Citrus Sinensis ID: 003171
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 842 | 2.2.26 [Sep-21-2011] | |||||||
| Q84W55 | 1101 | Type II inositol 1,4,5-tr | yes | no | 0.935 | 0.715 | 0.685 | 0.0 | |
| O80560 | 1305 | Type I inositol 1,4,5-tri | no | no | 0.877 | 0.566 | 0.635 | 0.0 | |
| Q9SYK4 | 1136 | Type I inositol 1,4,5-tri | no | no | 0.881 | 0.653 | 0.632 | 0.0 | |
| Q9SKB7 | 1144 | Type II inositol 1,4,5-tr | no | no | 0.889 | 0.654 | 0.612 | 0.0 | |
| P32019 | 993 | Type II inositol 1,4,5-tr | no | no | 0.313 | 0.265 | 0.276 | 3e-35 | |
| Q8K337 | 993 | Type II inositol 1,4,5-tr | yes | no | 0.313 | 0.265 | 0.266 | 4e-33 | |
| D3ZGS3 | 902 | Inositol polyphosphate 5- | no | no | 0.300 | 0.280 | 0.274 | 2e-28 | |
| Q01968 | 901 | Inositol polyphosphate 5- | no | no | 0.313 | 0.293 | 0.261 | 6e-28 | |
| O43426 | 1573 | Synaptojanin-1 OS=Homo sa | no | no | 0.301 | 0.161 | 0.284 | 2e-27 | |
| Q62910 | 1574 | Synaptojanin-1 OS=Rattus | no | no | 0.301 | 0.161 | 0.272 | 3e-27 |
| >sp|Q84W55|IP5P4_ARATH Type II inositol 1,4,5-trisphosphate 5-phosphatase FRA3 OS=Arabidopsis thaliana GN=FRA3 PE=1 SV=2 | Back alignment and function desciption |
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Score = 1113 bits (2880), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 557/812 (68%), Positives = 652/812 (80%), Gaps = 24/812 (2%)
Query: 30 IFDRYSSSLSPSSSEDDETESHPS-NSTIKRLDYMMEFLERKLSSSATTTNEKKRFASSS 88
+F+R + S S SS +D ES PS + + KR+DYM++FL+R+LS S
Sbjct: 28 LFNRSAYSSSSSSGDD---ESQPSVDDSNKRIDYMIQFLDRRLSEDGNHDGIGDG-NGSD 83
Query: 89 SLPEYIGKGGDIPMFKPPVRAALHPARPPSLEVKPHPLRETQIGCFLRTIVCTEEQLWAG 148
SLPE++GK G+ +FK P+R+A+HP RPPSL+V+PHPLRETQIG FLRT+ TE QLW G
Sbjct: 84 SLPEFVGKCGESGIFKVPIRSAVHPNRPPSLDVRPHPLRETQIGRFLRTMTSTERQLWTG 143
Query: 149 GENG-LRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVK---GVSSVMCMVGDEASG 204
GE+G LRVW ELY V + TAP+KES+ G ++V+CM+GDE S
Sbjct: 144 GEDGALRVWEFSELYGSGRGLEV--------EDTAPYKESLGNEFGSAAVVCMIGDEGSR 195
Query: 205 VVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGDLWSGSEGGGI 264
VVWSGHRDGRI CW+ L D G E LSWQAHRGPVLS+ IS+YGD+WSGSEGG +
Sbjct: 196 VVWSGHRDGRIRCWR-----LRGDHGIEEALSWQAHRGPVLSIAISAYGDIWSGSEGGAL 250
Query: 265 KIWPWE-AIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSR 323
K+WPW+ A+ K+LSLK EERH AAL VERSYID R+ +S NGF++ LTSD+ L+SDH+R
Sbjct: 251 KVWPWDGALGKSLSLKMEERHMAALAVERSYIDPRNMVSANGFANTLTSDVTFLVSDHTR 310
Query: 324 AKVWSAGFLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKD 383
A+VWSA L+FA+WDARTR+L+KVFNIDGQ+ENR + S+ PDF E+E K K VT+SKK+
Sbjct: 311 ARVWSASPLTFAIWDARTRDLIKVFNIDGQLENRPENSVYPDFGSEEEGKMK-VTASKKE 369
Query: 384 KAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGMIWTGGANGLLL 443
KAQSS GFFQRSRNAIMGAADAVRR A KGGF DD+R+TEA+ S+DGMIWTG +NG+L+
Sbjct: 370 KAQSSLGFFQRSRNAIMGAADAVRRAATKGGFCDDSRKTEAIVISVDGMIWTGSSNGILM 429
Query: 444 QWDPNGNRLQDFQYLPFAVQCLCTFGSQIWVGYMNGIVQVLDLEGNLLGGWVAHSSPVIK 503
+WD NGN LQ+F Y + C+ TF S++WVGY NG VQV DLEG LLGGWVAHS PVIK
Sbjct: 430 RWDGNGNCLQEFAYESSGILCMFTFCSRLWVGYSNGTVQVWDLEGKLLGGWVAHSGPVIK 489
Query: 504 MAVGAGYIFTLANHGGIRGWNVTSPGPLDSILCKELAGKEFLYTRMENLKILAGTWNVGQ 563
MA+GAGY+FTLANHGGIRGWNVTSPGPLD++L ELAGKEFLY+R+ENLKILAGTWNVG+
Sbjct: 490 MAIGAGYLFTLANHGGIRGWNVTSPGPLDNVLRAELAGKEFLYSRIENLKILAGTWNVGE 549
Query: 564 GRASQDALISWLGSAASDVGIVVVGLQEVEMGAGFLAMSAAKETVGLEGSAVGHWWLDMI 623
GRAS D+L+SWLG AA+ V IVVVGLQEVEMGAG LAMSAAKETVGLEGS +G WWLDMI
Sbjct: 550 GRASTDSLVSWLGCAATGVEIVVVGLQEVEMGAGVLAMSAAKETVGLEGSPLGQWWLDMI 609
Query: 624 GKILDDGSTFERVGSRQLAGLLIAVWVRKNLKDYVGDVDVAAVPCGFGRAIGNKGAVGLR 683
GK LD+GS+F RVGSRQLAGLLI VWVR +LK +VGDVD AAVPCGFGRAIGNKGAVG+R
Sbjct: 610 GKTLDEGSSFVRVGSRQLAGLLICVWVRHDLKPHVGDVDAAAVPCGFGRAIGNKGAVGVR 669
Query: 684 VRVYDRIMCFVNCHFAAHLEAVNRRNADFDHVYRTMTFCRPSNLCSAAAAGASSVVQMLR 743
+R+YDR++CFVNCHFAAHLEAVNRRNADFDHVYRTMTF R S+ +A AGAS V M R
Sbjct: 670 LRMYDRVLCFVNCHFAAHLEAVNRRNADFDHVYRTMTFSRQSSSLNAGVAGASFGVTMPR 729
Query: 744 STNPLSGLTVEGVPELSEADMVIFLGDFNYRLDGITYDEARDFISQRCFDWLRERDQLRA 803
N L T+E PELSEADMVIFLGDFNYRLD ITYDE RDFISQRCFDWLRE+DQL
Sbjct: 730 GGNALGVNTIEARPELSEADMVIFLGDFNYRLDDITYDETRDFISQRCFDWLREKDQLHT 789
Query: 804 EMEAGNVFQGMREADIKFPPTYKFEKHLAGLA 835
EMEAGNVFQGMREA I+FPPTYKFE+H AGLA
Sbjct: 790 EMEAGNVFQGMREAIIRFPPTYKFERHQAGLA 821
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Required for secondary wall synthesis and actin organization in fiber cells. Has phosphatase activity toward PtdIns(4,5)P2, PtdIns(3,4,5)P3 and Ins(1,4,5)P3. Has a higher substrate affinity toward PtdIns(4,5)P2. Arabidopsis thaliana (taxid: 3702) EC: 3EC: .EC: 1EC: .EC: 3EC: .EC: 3EC: 6 |
| >sp|O80560|IP5PC_ARATH Type I inositol 1,4,5-trisphosphate 5-phosphatase 12 OS=Arabidopsis thaliana GN=5PTASE12 PE=1 SV=1 | Back alignment and function description |
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Score = 983 bits (2540), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 476/749 (63%), Positives = 588/749 (78%), Gaps = 10/749 (1%)
Query: 90 LPEYIGKGGDIPMFKPPVRAALHPARPPSLEVKPHPLRETQIGCFLRTIVCTEEQLWAGG 149
LPE++G GG + MFK P R+ LH ARPP LE++PHPL+ETQ+G FLR I CTE QLWAG
Sbjct: 117 LPEFVGSGGGVGMFKVPTRSPLHSARPPCLELRPHPLKETQVGRFLRNIACTETQLWAGQ 176
Query: 150 ENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSG 209
E+G+R WN + ++ S V + G++ APF+ES S C++ D + +VWSG
Sbjct: 177 ESGVRFWNFDDAFEPGCGLSGRVQR--GDEDAAPFQESAS-TSPTTCLMVDNGNRLVWSG 233
Query: 210 HRDGRIMCWKMNARLLDSDDG-FGEVLSWQAHRGPVLSLCISSYGDLWSGSEGGGIKIWP 268
H+DG+I WKM+ L D DD F E L+WQAH+GPV S+ +SSYGDLWS SEGG IKIW
Sbjct: 234 HKDGKIRSWKMDYVLDDGDDSPFKEGLAWQAHKGPVNSVIMSSYGDLWSCSEGGVIKIWT 293
Query: 269 WEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWS 328
WE++EK+LSL+ EE+H AAL+VERS IDLR+ ++VNG +I +S++K LL+D+ R+KVW+
Sbjct: 294 WESMEKSLSLRLEEKHMAALLVERSGIDLRAQVTVNGTCNISSSEVKCLLADNVRSKVWA 353
Query: 329 AGFLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDF-AMEDEFKTKIVTSSKKDKAQS 387
A +F+LWD RT+ELLKVFN +GQ ENRVDM L D A EDE K KI ++SKK+K
Sbjct: 354 AQLQTFSLWDGRTKELLKVFNSEGQTENRVDMPLGQDQPAAEDEMKAKIASTSKKEKPH- 412
Query: 388 SFGFFQRSRNAIMGAADAVRRVAAKGGFG-DDNRRTEALTTSIDGMIWTGGANGLLLQWD 446
GF QRSRNAIMGAADAVRRVA +GG +D +RTEA+ + DGMIWTG NGLL+QWD
Sbjct: 413 --GFLQRSRNAIMGAADAVRRVATRGGGAYEDAKRTEAMVLAGDGMIWTGCTNGLLIQWD 470
Query: 447 PNGNRLQDFQYLPFAVQCLCTFGSQIWVGYMNGIVQVLDLEGNLLGGWVAHSSPVIKMAV 506
NGNRLQDF++ AV C CTFG +I++GY++G +Q++DLEGNL+ GWVAH++ VIKMA
Sbjct: 471 GNGNRLQDFRHHQCAVLCFCTFGERIYIGYVSGHIQIIDLEGNLIAGWVAHNNAVIKMAA 530
Query: 507 GAGYIFTLANHGGIRGWNVTSPGPLDSILCKELAGKEFLYTRMENLKILAGTWNVGQGRA 566
GYIF+LA HGGIRGW V SPGPLD I+ ELA KE Y + ++++IL G+WNVGQG+A
Sbjct: 531 ADGYIFSLATHGGIRGWPVISPGPLDGIIRSELAEKERTYAQTDSVRILTGSWNVGQGKA 590
Query: 567 SQDALISWLGSAASDVGIVVVGLQEVEMGAGFLAMSAAKETVG-LEGSAVGHWWLDMIGK 625
S DAL+SWLGS ASDVGI+VVGLQEVEMGAGFLAMSAAKE+VG EGS +G +W+D IGK
Sbjct: 591 SHDALMSWLGSVASDVGILVVGLQEVEMGAGFLAMSAAKESVGGNEGSTIGQYWIDTIGK 650
Query: 626 ILDDGSTFERVGSRQLAGLLIAVWVRKNLKDYVGDVDVAAVPCGFGRAIGNKGAVGLRVR 685
LD+ + FER+GSRQLAGLLI++WVRKNL+ +VGD+DVAAVPCGFGRAIGNKG VGLR+R
Sbjct: 651 TLDEKAVFERMGSRQLAGLLISLWVRKNLRTHVGDIDVAAVPCGFGRAIGNKGGVGLRIR 710
Query: 686 VYDRIMCFVNCHFAAHLEAVNRRNADFDHVYRTMTFCRPSNLCSAAAAGASSVVQMLRST 745
V+DRIMCF+NCH AAHLEAVNRRNADFDH+Y+TM+F R SN +A AAG S+ +S
Sbjct: 711 VFDRIMCFINCHLAAHLEAVNRRNADFDHIYKTMSFTRSSNAHNAPAAGVSTGSHTTKSA 770
Query: 746 NPLSGLTVEGVPELSEADMVIFLGDFNYRLDGITYDEARDFISQRCFDWLRERDQLRAEM 805
N + T E +L+EADMV+F GDFNYRL GI+YDEARDF+SQR FDWLRE+DQLRAEM
Sbjct: 771 NNANVNTEETKQDLAEADMVVFFGDFNYRLFGISYDEARDFVSQRSFDWLREKDQLRAEM 830
Query: 806 EAGNVFQGMREADIKFPPTYKFEKHLAGL 834
+AG VFQGMREA I FPPTYKFE+H GL
Sbjct: 831 KAGRVFQGMREAIITFPPTYKFERHRPGL 859
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Converts inositol 1,4,5-trisphosphate (Ins(1,4,5)P3) to inositol 1,4-bisphosphate. Arabidopsis thaliana (taxid: 3702) EC: 3 EC: . EC: 1 EC: . EC: 3 EC: . EC: 5 EC: 6 |
| >sp|Q9SYK4|IP5PD_ARATH Type I inositol 1,4,5-trisphosphate 5-phosphatase 13 OS=Arabidopsis thaliana GN=5PTASE13 PE=1 SV=1 | Back alignment and function description |
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Score = 982 bits (2539), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 477/754 (63%), Positives = 584/754 (77%), Gaps = 12/754 (1%)
Query: 87 SSSLPEYIGKGGDIPMFKPPVRAALHPARPPSLEVKPHPLRETQIGCFLRTIVCTEEQLW 146
+ LPE+IG GG +FK PVRAA+HP RPP LE++PHPLRETQ G FLR I CTE QLW
Sbjct: 106 TEPLPEFIGAGGGSGIFKVPVRAAVHPGRPPCLELRPHPLRETQTGRFLRNIACTETQLW 165
Query: 147 AGGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVV 206
AG ENG+R WNL++ Y+ V + G++ TAPF ESV S MC+V D+++ ++
Sbjct: 166 AGQENGIRFWNLEDAYEAGCGIGGQVPR--GDEDTAPFHESVT-TSPTMCLVADQSNKLL 222
Query: 207 WSGHRDGRIMCWKMNARLLDSDDG----FGEVLSWQAHRGPVLSLCISSYGDLWSGSEGG 262
WSGH+DG+I WKM+ + DD F E +SW AHRGPV S+ ISSYGD+WS SEGG
Sbjct: 223 WSGHKDGKIRAWKMDQSSVSHDDDDSDPFKERVSWLAHRGPVNSIVISSYGDMWSCSEGG 282
Query: 263 GIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHS 322
IKIWPW+ +EK+L LKPEE+H AAL+VERS IDLRS ++VNG SI +S++K LL+D
Sbjct: 283 VIKIWPWDTLEKSLLLKPEEKHMAALLVERSAIDLRSQVTVNGTCSISSSEVKFLLADSV 342
Query: 323 RAKVWSAGFLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKK 382
RAKVW+ LSF++WDAR+++LLKV N+DGQ+ENR D+ + D ++DE K K ++SK+
Sbjct: 343 RAKVWAVQSLSFSIWDARSKDLLKVLNVDGQVENRGDLPPIQDQQVDDEMKLKFFSASKR 402
Query: 383 DKAQSSFGFFQRSRNAIMGAADAVRRVAAK--GGFGDDNRRTEALTTSIDGMIWTGGANG 440
+K Q GF QRSRNAIMGAA AVRRVA + G F +D R+TEA+ ++DG IWTG +G
Sbjct: 403 EKPQ---GFLQRSRNAIMGAAGAVRRVATRSAGAFSEDTRKTEAIVLAVDGTIWTGSISG 459
Query: 441 LLLQWDPNGNRLQDFQYLPFAVQCLCTFGSQIWVGYMNGIVQVLDLEGNLLGGWVAHSSP 500
L++QWD NGNRL+D + V C CTFG +I+VGY +G +QVLDL+G L+ WV+H+ P
Sbjct: 460 LIVQWDGNGNRLRDVNHHHRPVLCFCTFGDRIYVGYASGYIQVLDLDGKLISSWVSHNEP 519
Query: 501 VIKMAVGAGYIFTLANHGGIRGWNVTSPGPLDSILCKELAGKEFLYTRMENLKILAGTWN 560
VIK+A G G+IF+LA HGG+RGW VTSPGPLD+I+ EL+ KE LY R +N++IL GTWN
Sbjct: 520 VIKLAAGGGFIFSLATHGGVRGWYVTSPGPLDNIIRTELSQKETLYARQDNVRILIGTWN 579
Query: 561 VGQGRASQDALISWLGSAASDVGIVVVGLQEVEMGAGFLAMSAAKETVGLEGSAVGHWWL 620
VGQGRAS DAL+SWLGS SDVGIV VGLQEVEMGAGFLAMSAAKETVGLEGSAVG WW+
Sbjct: 580 VGQGRASHDALMSWLGSVTSDVGIVAVGLQEVEMGAGFLAMSAAKETVGLEGSAVGQWWI 639
Query: 621 DMIGKILDDGSTFERVGSRQLAGLLIAVWVRKNLKDYVGDVDVAAVPCGFGRAIGNKGAV 680
D IGK LD+ +TFER+GSRQLAGLLI++W RK+++ +VGD+DVAAVPCGFGRAIGNKG V
Sbjct: 640 DAIGKALDEKNTFERMGSRQLAGLLISLWARKDIRTHVGDLDVAAVPCGFGRAIGNKGGV 699
Query: 681 GLRVRVYDRIMCFVNCHFAAHLEAVNRRNADFDHVYRTMTFCRPSNLCSAAAAGASSVVQ 740
GLR+RVYDRIMCFVNCH AAHLEAVNRRNADF+H++R M F R NL +AAAAG S+
Sbjct: 700 GLRIRVYDRIMCFVNCHLAAHLEAVNRRNADFNHIFRLMVFSRGQNLSNAAAAGVSTSAY 759
Query: 741 MLRSTNPLSGLTVEGVPELSEADMVIFLGDFNYRLDGITYDEARDFISQRCFDWLRERDQ 800
+S S E +L+ ADMV F GDFNYRL GITYDEARDFISQR FDWLRERDQ
Sbjct: 760 TTKSNTIPSTGAEEIKSDLAAADMVAFFGDFNYRLFGITYDEARDFISQRSFDWLRERDQ 819
Query: 801 LRAEMEAGNVFQGMREADIKFPPTYKFEKHLAGL 834
LRAEM+ G VFQGMREA I FPPTYKFE++ +GL
Sbjct: 820 LRAEMKVGKVFQGMREALITFPPTYKFERNRSGL 853
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Converts inositol 1,4,5-trisphosphate (Ins(1,4,5)P3) to inositol 1,4-bisphosphate. Modulates cotyledon vein development through regulating auxin homeostasis. Involved in blue light responses. Decreases the amount of KIN10 degraded by the proteasome under low nutrient conditions. Arabidopsis thaliana (taxid: 3702) EC: 3 EC: . EC: 1 EC: . EC: 3 EC: . EC: 5 EC: 6 |
| >sp|Q9SKB7|IP5PE_ARATH Type II inositol 1,4,5-trisphosphate 5-phosphatase 14 OS=Arabidopsis thaliana GN=5PTASE14 PE=1 SV=1 | Back alignment and function description |
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Score = 917 bits (2371), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 466/761 (61%), Positives = 573/761 (75%), Gaps = 12/761 (1%)
Query: 79 NEKKRFASSSSLPEYIGKGGDIPMFKPPVRAALHPARPPSLEVKPHPLRETQIGCFLRTI 138
N+ R SLPE+IG GG + +FK PVRAA++P RPP LE++PHPLRETQ G FLR I
Sbjct: 109 NDGGREDDIESLPEFIGAGGGLDVFKVPVRAAVNPGRPPCLELRPHPLRETQTGKFLRNI 168
Query: 139 VCTEEQLWAGGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMV 198
CTE QLWAG ENG+R WNL+E Y+ V + G++ TAPF ESV S +C++
Sbjct: 169 ACTESQLWAGQENGVRFWNLEEAYEVGCGLGGQVRR--GDEDTAPFHESVP-TSPALCLL 225
Query: 199 GDEASGVVWSGHRDGRIMCWKMN---ARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGDL 255
D + +VW+GH+DG+I WKMN D F E LSWQAHRGPV + ISSYGD+
Sbjct: 226 VDHGNRLVWTGHKDGKIRAWKMNQPNTTTADDSKPFKERLSWQAHRGPVNYIVISSYGDM 285
Query: 256 WSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIK 315
WS S+GG IKIW +++EK+L LK EE+H AAL+VERS IDLRS ++VNG SI +SD+K
Sbjct: 286 WSCSDGGVIKIWTLDSLEKSLVLKLEEKHMAALLVERSGIDLRSQVTVNGTCSISSSDVK 345
Query: 316 NLLSDHSRAKVWSAGFLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTK 375
LL D +AKVW+ LSF+LWDA+ +ELLKVFNIDGQ+ENRVDM +ED K K
Sbjct: 346 FLLVDTVKAKVWAVQHLSFSLWDAQNKELLKVFNIDGQVENRVDMPPTQGQQVEDT-KAK 404
Query: 376 IVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAK--GGFGDDNRRTEALTTSIDGMI 433
++ KK+K+Q GF QRSR+AIMGAA AVRR A + G F +D R+ EA+ + DG I
Sbjct: 405 FFSAPKKEKSQ---GFLQRSRHAIMGAAGAVRRAATRSAGAFAEDTRKVEAIAIAADGSI 461
Query: 434 WTGGANGLLLQWDPNGNRLQDFQYLPFAVQCLCTFGSQIWVGYMNGIVQVLDLEGNLLGG 493
WTG NG++ QWD NG+RL++ + AV C CTFG +I+VGY +G +QVLDL G L+
Sbjct: 462 WTGSMNGVIAQWDGNGSRLREVNHHQQAVLCFCTFGDRIYVGYSSGYIQVLDLGGKLIAS 521
Query: 494 WVAHSSPVIKMAVGAGYIFTLANHGGIRGWNVTSPGPLDSILCKELAGKEFLYTRMENLK 553
WV+H+ PVIK+A G G+IF+LA HGG+RGW VTSPGPLDS++ EL+ KE Y R +++K
Sbjct: 522 WVSHNEPVIKLAAGGGFIFSLATHGGVRGWYVTSPGPLDSLIRTELSQKEMAYARQDSVK 581
Query: 554 ILAGTWNVGQGRASQDALISWLGSAASDVGIVVVGLQEVEMGAGFLAMSAAKETVGLEGS 613
IL GTWNVG+GRAS+ AL+SWLGSA SDVGIV +GLQEV+MGAGFLAMS AKETVG+EGS
Sbjct: 582 ILIGTWNVGEGRASRGALVSWLGSAVSDVGIVAIGLQEVDMGAGFLAMSTAKETVGVEGS 641
Query: 614 AVGHWWLDMIGKILDDGSTFERVGSRQLAGLLIAVWVRKNLKDYVGDVDVAAVPCGFGRA 673
AVG WWLD IG LD+ +TFER+GSRQLAGLLI++WVRK+++ +VGD+DVAAVPCGFGRA
Sbjct: 642 AVGQWWLDAIGNALDERNTFERMGSRQLAGLLISLWVRKSIRTHVGDLDVAAVPCGFGRA 701
Query: 674 IGNKGAVGLRVRVYDRIMCFVNCHFAAHLEAVNRRNADFDHVYRTMTFCRPSNLCSAAAA 733
IGNKG VGLR+RVYDRIMCFVNCH AAHLEAV RRNADF+H+YR+M F + ++ +AAAA
Sbjct: 702 IGNKGGVGLRIRVYDRIMCFVNCHLAAHLEAVTRRNADFNHIYRSMVFSKGQSVYTAAAA 761
Query: 734 GASSVVQMLRSTNPLSGLTVEGVPELSEADMVIFLGDFNYRLDGITYDEARDFISQRCFD 793
GAS+ Q L++ + T E L+ AD+V F GDFNYRL GITYDEARDFIS R FD
Sbjct: 762 GASTSAQALKNNPNTNNSTEEEKSHLASADLVAFFGDFNYRLFGITYDEARDFISHRSFD 821
Query: 794 WLRERDQLRAEMEAGNVFQGMREADIKFPPTYKFEKHLAGL 834
WLRE+DQLR EM G VFQGMREA I FPPTYKFEK+ GL
Sbjct: 822 WLREKDQLRQEMNEGKVFQGMREALITFPPTYKFEKNKPGL 862
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Has phosphatase activity toward PtdIns(4,5)P2, PtdIns(3,4,5)P3 and Ins(1,4,5)P3. Arabidopsis thaliana (taxid: 3702) EC: 3 EC: . EC: 1 EC: . EC: 3 EC: . EC: 3 EC: 6 |
| >sp|P32019|I5P2_HUMAN Type II inositol 1,4,5-trisphosphate 5-phosphatase OS=Homo sapiens GN=INPP5B PE=1 SV=4 | Back alignment and function description |
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Score = 151 bits (381), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 83/300 (27%), Positives = 148/300 (49%), Gaps = 36/300 (12%)
Query: 529 GPLDSILCKELAGKEFLYTRMENLKILAGTWNVGQGRASQDALISWLGSAASDVGIVVVG 588
G D+I+ L KE YT ++N + AGT+NV G++ ++ L WL + + VG
Sbjct: 322 GLRDTIVKSHLLQKEEDYTYIQNFRFFAGTYNVN-GQSPKECLRLWLSNGIQAPDVYCVG 380
Query: 589 LQEVEMGAGFLAMSAAKETVGLEGSAVGHWWLDMIGKILDDGSTFERVGSRQLAGLLIAV 648
QE+++ +KE + W + + L + + +V +L G+++ +
Sbjct: 381 FQELDL---------SKEAFFFHDTPKEEEWFKAVSEGLHPDAKYAKVKLIRLVGIMLLL 431
Query: 649 WVRKNLKDYVGDVDVAAVPCGFGRAIGNKGAVGLRVRVYDRIMCFVNCHFAAHLEAVNRR 708
+V++ Y+ +V+ V G +GNKG V +R + ++ +C VN H AAH+E RR
Sbjct: 432 YVKQEHAAYISEVEAETVGTGIMGRMGNKGGVAIRFQFHNTSICVVNSHLAAHIEEYERR 491
Query: 709 NADFDHVYRTMTFCRPSNLCSAAAAGASSVVQMLRSTNPLSGLTVEGVPELSEADMVIFL 768
N D+ + M FC+P S PL+ +S D++++L
Sbjct: 492 NQDYKDICSRMQFCQPDP-----------------SLPPLT---------ISNHDVILWL 525
Query: 769 GDFNYRLDGITYDEARDFISQRCFDWLRERDQLRAEMEAGNVFQGMREADIKFPPTYKFE 828
GD NYR++ + ++ + I ++ F L DQL+ ++ A VF+G E ++ F PTYK++
Sbjct: 526 GDLNYRIEELDVEKVKKLIEEKDFQMLYAYDQLKIQVAAKTVFEGFTEGELTFQPTYKYD 585
|
Hydrolyzes phosphatidylinositol 4,5-bisphosphate (PtIns(4,5)P2) and the signaling molecule phosphatidylinositol 1,4,5-trisphosphate (PtIns(1,4,5)P3), and thereby modulates cellular signaling events. Homo sapiens (taxid: 9606) EC: 3 EC: . EC: 1 EC: . EC: 3 EC: . EC: 3 EC: 6 |
| >sp|Q8K337|I5P2_MOUSE Type II inositol 1,4,5-trisphosphate 5-phosphatase OS=Mus musculus GN=Inpp5b PE=1 SV=1 | Back alignment and function description |
|---|
Score = 144 bits (362), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 80/300 (26%), Positives = 146/300 (48%), Gaps = 36/300 (12%)
Query: 529 GPLDSILCKELAGKEFLYTRMENLKILAGTWNVGQGRASQDALISWLGSAASDVGIVVVG 588
G D+I+ L KE YT ++N + GT+NV G++ ++ L WL +A + VG
Sbjct: 322 GLRDTIVRSHLVQKEENYTYIQNFRFFVGTYNVN-GQSPKECLRPWLSHSALAPDVYCVG 380
Query: 589 LQEVEMGAGFLAMSAAKETVGLEGSAVGHWWLDMIGKILDDGSTFERVGSRQLAGLLIAV 648
QE+++ +KE + W + + L + + +V +L G+++ +
Sbjct: 381 FQELDL---------SKEAFFFHDTPKEEEWFKAVSESLHPDAKYAKVKFVRLVGIMLLL 431
Query: 649 WVRKNLKDYVGDVDVAAVPCGFGRAIGNKGAVGLRVRVYDRIMCFVNCHFAAHLEAVNRR 708
+V++ Y+ +V+ V G +GNKG V +R ++++ +C VN H AAH E RR
Sbjct: 432 YVKQEHAAYISEVEAETVGTGIMGRMGNKGGVAIRFQLHNTSICVVNSHLAAHTEEYERR 491
Query: 709 NADFDHVYRTMTFCRPSNLCSAAAAGASSVVQMLRSTNPLSGLTVEGVPELSEADMVIFL 768
N D+ + M F Q+ S PL+ +++ D++++L
Sbjct: 492 NQDYRDICSRMQF-----------------PQVDPSQPPLT---------INKHDVILWL 525
Query: 769 GDFNYRLDGITYDEARDFISQRCFDWLRERDQLRAEMEAGNVFQGMREADIKFPPTYKFE 828
GD NYR++ + + + + ++ F L DQL+ ++ A +F G E +I F PTYK++
Sbjct: 526 GDLNYRIEELDVGKVKKLVEEKAFQTLYAHDQLKIQVAARTIFDGFTEGEITFQPTYKYD 585
|
Hydrolyzes phosphatidylinositol 4,5-bisphosphate (PtIns(4,5)P2) and the signaling molecule phosphatidylinositol 1,4,5-trisphosphate (PtIns(1,4,5)P3), and thereby modulates cellular signaling events. Mus musculus (taxid: 10090) EC: 3 EC: . EC: 1 EC: . EC: 3 EC: . EC: 3 EC: 6 |
| >sp|D3ZGS3|OCRL_RAT Inositol polyphosphate 5-phosphatase OCRL-1 OS=Rattus norvegicus GN=Ocrl PE=1 SV=1 | Back alignment and function description |
|---|
Score = 128 bits (322), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 80/291 (27%), Positives = 131/291 (45%), Gaps = 38/291 (13%)
Query: 539 LAGKEFLYTRMENLKILAGTWNVGQGRASQDALISWLGSAASDVGIVVVGLQEVEMGA-G 597
LA +E Y +++ + GTWNV G++ +L WL + I +G QE+++
Sbjct: 228 LAKREKEYVNIQSFRFFVGTWNVN-GQSPDSSLEPWLNCDPNPPDIYCIGFQELDLSTEA 286
Query: 598 FLAMSAAKETVGLEGSAVGHWWLDMIGKILDDGSTFERVGSRQLAGLLIAVWVRKNLKDY 657
F + KE W + + L + +++V +L G+++ V+ +K+ Y
Sbjct: 287 FFYFESVKE----------QEWAMAVERGLPSKAKYKKVQLVRLVGMMLLVFAKKDQCQY 336
Query: 658 VGDVDVAAVPCGFGRAIGNKGAVGLRVRVYDRIMCFVNCHFAAHLEAVNRRNADFDHVYR 717
+ D+ V G +GNKG V +R ++ C VN H AAH+E RRN D+ +
Sbjct: 337 IRDIATETVGTGIMGKMGNKGGVAMRFVFHNTTFCIVNSHLAAHVEEFERRNQDYKDICA 396
Query: 718 TMTFCRPSNLCSAAAAGASSVVQMLRSTNPLSGLTVEGVPELSEADMVIFLGDFNYRLDG 777
M+F P+ Q L N + + D+VI+LGD NYRL
Sbjct: 397 RMSFSVPN--------------QTLPQVN------------IMKHDVVIWLGDLNYRLCM 430
Query: 778 ITYDEARDFISQRCFDWLRERDQLRAEMEAGNVFQGMREADIKFPPTYKFE 828
+E + I++ L + DQL + F E +IKF PTYK++
Sbjct: 431 PDANEVKSLINKNELQKLLKFDQLNIQRTQKKAFVDFNEGEIKFIPTYKYD 481
|
Converts phosphatidylinositol 4,5-bisphosphate to phosphatidylinositol 4-phosphate. Also converts inositol 1,4,5-trisphosphate to inositol 1,4-bisphosphate and inositol 1,3,4,5-tetrakisphosphate to inositol 1,3,4-trisphosphate. May function in lysosomal membrane trafficking by regulating the specific pool of phosphatidylinositol 4,5-bisphosphate that is associated with lysosomes. Involved in primary cilia assembly. Rattus norvegicus (taxid: 10116) EC: 3 EC: . EC: 1 EC: . EC: 3 EC: . EC: 3 EC: 6 |
| >sp|Q01968|OCRL_HUMAN Inositol polyphosphate 5-phosphatase OCRL-1 OS=Homo sapiens GN=OCRL PE=1 SV=3 | Back alignment and function description |
|---|
Score = 126 bits (317), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 80/306 (26%), Positives = 137/306 (44%), Gaps = 42/306 (13%)
Query: 526 TSPGPLDSILCKELAGKEFLYTRMENLKILAGTWNVGQGRASQDALISWLGSAASDVGIV 585
T G + ++ LA +E Y ++ + GTWNV G++ L WL + I
Sbjct: 214 TQSGQREGLIKHILAKREKEYVNIQTFRFFVGTWNVN-GQSPDSGLEPWLNCDPNPPDIY 272
Query: 586 VVGLQEVEMGA-GFLAMSAAKETVGLEGSAVGHWWLDMIGKILDDGSTFERVGSRQLAGL 644
+G QE+++ F + KE W + + L + +++V +L G+
Sbjct: 273 CIGFQELDLSTEAFFYFESVKE----------QEWSMAVERGLHSKAKYKKVQLVRLVGM 322
Query: 645 LIAVWVRKNLKDYVGDVDVAAVPCGFGRAIGNKGAVGLRVRVYDRIMCFVNCHFAAHLEA 704
++ ++ RK+ Y+ D+ V G +GNKG V +R ++ C VN H AAH+E
Sbjct: 323 MLLIFARKDQCRYIRDIATETVGTGIMGKMGNKGGVAVRFVFHNTTFCIVNSHLAAHVED 382
Query: 705 VNRRNADFDHVYRTMTFCRPSNLCSAAAAGASSVVQMLRSTNPLSGLTVEGVPELS--EA 762
RRN D+ + M+F P+ + +P+L+ +
Sbjct: 383 FERRNQDYKDICARMSFVVPN----------------------------QTLPQLNIMKH 414
Query: 763 DMVIFLGDFNYRLDGITYDEARDFISQRCFDWLRERDQLRAEMEAGNVFQGMREADIKFP 822
++VI+LGD NYRL +E + I+++ L + DQL + F E +IKF
Sbjct: 415 EVVIWLGDLNYRLCMPDANEVKSLINKKDLQRLLKFDQLNIQRTQKKAFVDFNEGEIKFI 474
Query: 823 PTYKFE 828
PTYK++
Sbjct: 475 PTYKYD 480
|
Converts phosphatidylinositol 4,5-bisphosphate to phosphatidylinositol 4-phosphate. Also converts inositol 1,4,5-trisphosphate to inositol 1,4-bisphosphate and inositol 1,3,4,5-tetrakisphosphate to inositol 1,3,4-trisphosphate. May function in lysosomal membrane trafficking by regulating the specific pool of phosphatidylinositol 4,5-bisphosphate that is associated with lysosomes. Involved in primary cilia assembly. Homo sapiens (taxid: 9606) EC: 3 EC: . EC: 1 EC: . EC: 3 EC: . EC: 3 EC: 6 |
| >sp|O43426|SYNJ1_HUMAN Synaptojanin-1 OS=Homo sapiens GN=SYNJ1 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 125 bits (314), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 90/316 (28%), Positives = 139/316 (43%), Gaps = 62/316 (19%)
Query: 533 SILCKELAGKEFLYTRMENLKILAGTWNVGQGRA------SQDALISWLGSAASDVGI-- 584
S + K + + Y++ + +++ GTWNV G+ L WL A GI
Sbjct: 514 SKVLKSMCENFYKYSKPKKIRVCVGTWNVNGGKQFRSIAFKNQTLTDWLLDAPKLAGIQE 573
Query: 585 -----------VVVGLQE-VEMGAGFLAMSAAKETVGLEGSAVGHWWLDMIGKILDDGST 632
+G +E VE+ AG + +SA+ L W + K + +
Sbjct: 574 FQDKRSKPTDIFAIGFEEMVELNAGNI-VSASTTNQKL--------WAVELQKTISRDNK 624
Query: 633 FERVGSRQLAGLLIAVWVRKNLKDYVGDVDVAAVPCGFGRAIGNKGAVGLRVRVYDRIMC 692
+ + S QL G+ + V++R ++ DV V V G G A GNKGAV +R+ + +C
Sbjct: 625 YVLLASEQLVGVCLFVFIRPQHAPFIRDVAVDTVKTGMGGATGNKGAVAIRMLFHTTSLC 684
Query: 693 FVNCHFAAHLEAVNRRNADFDHVYRTMTFCRPSNLCSAAAAGASSVVQMLRSTNPLSGLT 752
FV HFAA V RN DF + R ++F P+ +
Sbjct: 685 FVCSHFAAGQSQVKERNEDFIEIARKLSF-------------------------PMGRM- 718
Query: 753 VEGVPELSEADMVIFLGDFNYRLDGITYDEARDFISQRCFDWLRERDQLRAEMEAGNVFQ 812
L D V + GDFNYR+D + +E ++ I Q+ +D L DQL + AG VF+
Sbjct: 719 ------LFSHDYVFWCGDFNYRID-LPNEEVKELIRQQNWDSLIAGDQLINQKNAGQVFR 771
Query: 813 GMREADIKFPPTYKFE 828
G E + F PTYK++
Sbjct: 772 GFLEGKVTFAPTYKYD 787
|
Inositol 5-phosphatase which has a role in clathrin-mediated endocytosis. Homo sapiens (taxid: 9606) EC: 3 EC: . EC: 1 EC: . EC: 3 EC: . EC: 3 EC: 6 |
| >sp|Q62910|SYNJ1_RAT Synaptojanin-1 OS=Rattus norvegicus GN=Synj1 PE=1 SV=3 | Back alignment and function description |
|---|
Score = 124 bits (311), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 86/316 (27%), Positives = 136/316 (43%), Gaps = 62/316 (19%)
Query: 533 SILCKELAGKEFLYTRMENLKILAGTWNVGQGRA------SQDALISWLGSAASDVGI-- 584
S + K + + Y++ + +++ GTWNV G+ L WL A GI
Sbjct: 514 SKVLKNMCENFYKYSKPKKIRVCVGTWNVNGGKQFRSIAFKNQTLTDWLLDAPKLAGIQE 573
Query: 585 -----------VVVGLQE-VEMGAGFLAMSAAKETVGLEGSAVGHWWLDMIGKILDDGST 632
+G +E VE+ AG + ++ W + K + +
Sbjct: 574 FQDKRSKPTDIFAIGFEEMVELNAGNIVNASTTNQ---------KLWAVELQKTISRDNK 624
Query: 633 FERVGSRQLAGLLIAVWVRKNLKDYVGDVDVAAVPCGFGRAIGNKGAVGLRVRVYDRIMC 692
+ + S QL G+ + V++R ++ DV V V G G A GNKGAV +R+ + +C
Sbjct: 625 YVLLASEQLVGVCLFVFIRPQHAPFIRDVAVDTVKTGMGGATGNKGAVAIRMLFHTTSLC 684
Query: 693 FVNCHFAAHLEAVNRRNADFDHVYRTMTFCRPSNLCSAAAAGASSVVQMLRSTNPLSGLT 752
FV HFAA V RN DF + R ++F P+ +
Sbjct: 685 FVCSHFAAGQSQVKERNEDFVEIARKLSF-------------------------PMGRM- 718
Query: 753 VEGVPELSEADMVIFLGDFNYRLDGITYDEARDFISQRCFDWLRERDQLRAEMEAGNVFQ 812
L D V + GDFNYR+D + +E ++ I Q+ +D L DQL + AG +F+
Sbjct: 719 ------LFSHDYVFWCGDFNYRID-LPNEEVKELIRQQNWDSLIAGDQLINQKNAGQIFR 771
Query: 813 GMREADIKFPPTYKFE 828
G E + F PTYK++
Sbjct: 772 GFLEGKVTFAPTYKYD 787
|
Inositol 5-phosphatase which has a role in clathrin-mediated endocytosis. Rattus norvegicus (taxid: 10116) EC: 3 EC: . EC: 1 EC: . EC: 3 EC: . EC: 3 EC: 6 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 842 | ||||||
| 296083403 | 1105 | unnamed protein product [Vitis vinifera] | 0.958 | 0.730 | 0.707 | 0.0 | |
| 255547426 | 1102 | type II inositol 5-phosphatase, putative | 0.918 | 0.701 | 0.693 | 0.0 | |
| 356574838 | 1138 | PREDICTED: type II inositol-1,4,5-trisph | 0.931 | 0.688 | 0.687 | 0.0 | |
| 42562979 | 1101 | Type II inositol-1,4,5-trisphosphate 5-p | 0.935 | 0.715 | 0.685 | 0.0 | |
| 4688596 | 1101 | inositol 1,4,5-trisphosphate 5-phosphata | 0.935 | 0.715 | 0.685 | 0.0 | |
| 297841089 | 1103 | hypothetical protein ARALYDRAFT_475657 [ | 0.961 | 0.734 | 0.667 | 0.0 | |
| 28393619 | 1101 | unknown protein [Arabidopsis thaliana] | 0.935 | 0.715 | 0.684 | 0.0 | |
| 356535258 | 1100 | PREDICTED: type II inositol-1,4,5-trisph | 0.909 | 0.696 | 0.700 | 0.0 | |
| 449442781 | 1130 | PREDICTED: type II inositol 1,4,5-trisph | 0.977 | 0.728 | 0.651 | 0.0 | |
| 449485393 | 896 | PREDICTED: LOW QUALITY PROTEIN: type II | 0.977 | 0.918 | 0.650 | 0.0 |
| >gi|296083403|emb|CBI23358.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1173 bits (3034), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 591/835 (70%), Positives = 683/835 (81%), Gaps = 28/835 (3%)
Query: 11 DDVVSSATSH-SYTDHQGTRIFDRYSSSLSPSSSEDD---------ETESHPSNSTIKRL 60
DDV S H SY+ G+ ++ SSS+DD + S + +RL
Sbjct: 9 DDVFPSLNLHPSYSSDDGSNRTPKFFDRFYDSSSDDDFCPSSSAAAPSISEGVENAGRRL 68
Query: 61 DYMMEFLERKLSSSATTTNEKKRFASSSSLPEYIGKGGDIPMFKPPVRAALHPARPPSLE 120
DYM++FLERKLSS +++ R +LPE++GKGG MFK PV ++HP RPPSLE
Sbjct: 69 DYMIQFLERKLSSP---DHDRTR-----ALPEFVGKGGGTGMFKVPVHVSVHPGRPPSLE 120
Query: 121 VKPHPLRETQIGCFLRTIVCTEEQLWAGGENGLRVWNLKELYDESESDSVSVSKSKGEDG 180
V+PHPLRETQIGCFLR++VCTE QLWAG E G+RVWN +LY S + V++S G++
Sbjct: 121 VRPHPLRETQIGCFLRSVVCTESQLWAGQECGVRVWNFSDLYG-SACGAGGVTRS-GDEE 178
Query: 181 TAPFKESVKGVSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAH 240
TAPF ESV+ + +C+V DEA+ +VWSGH+DG++ WKM+ RL D+ F E L+W AH
Sbjct: 179 TAPFCESVQ-TPAAICLVVDEANRLVWSGHKDGKVRAWKMDQRLGDAP--FTECLAWLAH 235
Query: 241 RGPVLSLCISSYGDLWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSH 300
R PVLSL ++SYGDLWSGSEGG IKIWPWE+IEK SL EERH AAL+VERS+IDLRS
Sbjct: 236 RTPVLSLVMTSYGDLWSGSEGGVIKIWPWESIEKVFSLTMEERHMAALLVERSFIDLRSQ 295
Query: 301 LSVNGFSSILTSDIKNLLSDHSRAKVWSAGFLSFALWDARTRELLKVFNIDGQIENRVDM 360
++VNG +IL SD+K ++SD+ RAKVWSAG+ SFALWDARTRELLKVFN+DGQ+ENRVD+
Sbjct: 296 VTVNGVCNILASDVKYMISDNCRAKVWSAGYQSFALWDARTRELLKVFNVDGQMENRVDI 355
Query: 361 SLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNR 420
S + D A ++E+K K V+S KKDK Q+SF F QRSRNAIMGAADAVRRVAAKG FGDD+R
Sbjct: 356 SPVQDPAFDEEWKMKSVSSLKKDKLQASFSFLQRSRNAIMGAADAVRRVAAKGAFGDDSR 415
Query: 421 RTEALTTSIDGMIWTGGANGLLLQWDPNGNRLQDFQYLPFAVQCLCTFGSQIWVGYMNGI 480
RTEAL +IDGMIWTG +GLL+QWD NGNRLQDF Y FAVQC CTFGS+IWVGY++G
Sbjct: 416 RTEALVMTIDGMIWTGCTSGLLVQWDGNGNRLQDFHYHSFAVQCFCTFGSRIWVGYVSGT 475
Query: 481 VQVLDLEGNLLGGWVAHSSPVIKMAVGAGYIFTLANHGGIRGWNVTSPGPLDSILCKELA 540
VQVLDLEGNLLGGW+AH SPVI M GAGY+FTLAN GGIRGWN TSPGPLDSIL ELA
Sbjct: 476 VQVLDLEGNLLGGWIAHDSPVINMTSGAGYVFTLANDGGIRGWNTTSPGPLDSILSSELA 535
Query: 541 GKEFLYTRMENLKILAGTWNVGQGRASQDALISWLGSAASDVGIVVVGLQEVEMGAGFLA 600
GKEFLYTR+ENLKILAGTWNVGQGRAS D+LISWLGSA+SDVGI+VVGLQEVEMGAGFLA
Sbjct: 536 GKEFLYTRLENLKILAGTWNVGQGRASHDSLISWLGSASSDVGIIVVGLQEVEMGAGFLA 595
Query: 601 MSAAKETVGLEGSAVGHWWLDMIGKILDDGSTFERVGSRQLAGLLIAVWVRKNLKDYVGD 660
MSAAKETVGLEGS+VG WWLDMIG+ LD+GS FERVGSRQLAGLLIAVWVR N++ +VGD
Sbjct: 596 MSAAKETVGLEGSSVGQWWLDMIGRTLDEGSIFERVGSRQLAGLLIAVWVRNNIRAHVGD 655
Query: 661 VDVAAVPCGFGRAIGNKGAVGLRVRVYDRIMCFVNCHFAAHLEAVNRRNADFDHVYRTMT 720
VD AAVPCGFGRAIGNKGAVGLR+RVY+RIMCFVNCHFAAHLEAVNRRNADFDHVYRTM
Sbjct: 656 VDAAAVPCGFGRAIGNKGAVGLRMRVYNRIMCFVNCHFAAHLEAVNRRNADFDHVYRTMI 715
Query: 721 FCRPSNLCSAAAAGASSVVQMLRSTNPLSGLTVEGVPELSEADMVIFLGDFNYRLDGITY 780
F RPSNL +A AG SS VQMLRS N +VEG PELSEADMV+FLGDFNYRLDGI+Y
Sbjct: 716 FSRPSNLFNATTAGVSSAVQMLRSAN-----SVEGTPELSEADMVVFLGDFNYRLDGISY 770
Query: 781 DEARDFISQRCFDWLRERDQLRAEMEAGNVFQGMREADIKFPPTYKFEKHLAGLA 835
DEARDF+SQRCFDWL+ERDQLRAEMEAGNVFQGMREA ++FPPTYKFE+H AGLA
Sbjct: 771 DEARDFVSQRCFDWLKERDQLRAEMEAGNVFQGMREAVVRFPPTYKFERHQAGLA 825
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255547426|ref|XP_002514770.1| type II inositol 5-phosphatase, putative [Ricinus communis] gi|223545821|gb|EEF47324.1| type II inositol 5-phosphatase, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 1137 bits (2940), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 573/826 (69%), Positives = 662/826 (80%), Gaps = 53/826 (6%)
Query: 29 RIFDRYSSSLSPSSSEDDETESHPSNSTIKRLDYMMEFLERKLSSSATTTN--------- 79
RIFDRY LSPSS+ D+ ES S +T KRLDYM++FL+RKLS++ T N
Sbjct: 30 RIFDRY---LSPSSTSSDD-ESQLSEATTKRLDYMIQFLDRKLSTTCTDNNIPNSPSSSS 85
Query: 80 ---------EKKRFASSSSLPEYIGKGGDIPMFKPPVRAALHPARPPSLEVKPHPLRETQ 130
+SS +LPE+IGKGG +F+ P R ALHP RPPSLEV+P PLRE+Q
Sbjct: 86 SSHYYDNNYRNNNQSSSGALPEFIGKGGGSGIFRVPARRALHPGRPPSLEVRPRPLRESQ 145
Query: 131 IGCFLRTIVCTEEQLWAGGENG-LRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVK 189
IGC+LRTI +E QLW+G E+G L+VW +LY SE TAP+ ESV
Sbjct: 146 IGCYLRTITTSETQLWSGSEDGALQVWEFDDLYGGSEE-------------TAPYTESVG 192
Query: 190 GVSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCI 249
S+V+CMVGD+A+ VVWSGHRDG++ CWKM+ + + F EVLSW AHR +LS+ I
Sbjct: 193 LGSAVLCMVGDDANKVVWSGHRDGKVRCWKMDF----TSNRFREVLSWIAHRSSILSMLI 248
Query: 250 SSYGDLWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSI 309
+SYGDLWSGSEGG IKIWPWE+I + S +ERH A+L VERSYID ++ ++NGFS+
Sbjct: 249 TSYGDLWSGSEGGAIKIWPWESIHTSFSFTEDERHLASLTVERSYIDPKAQFALNGFSNA 308
Query: 310 LTSDIKNLLSDHSRAKVWSAGFLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAME 369
L+SDI+ LLSDHSRAKVW+AG+ SFALWDAR+RELLKVFN+DGQIE ++DMS D E
Sbjct: 309 LSSDIRYLLSDHSRAKVWTAGYFSFALWDARSRELLKVFNLDGQIE-KLDMSSAQDITFE 367
Query: 370 DEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSI 429
DE K KIV SKKDK Q+SFGFFQRSRNAIMGAADAVRRVAAKGGFG+D RRTEAL SI
Sbjct: 368 DEIKMKIVAGSKKDKIQTSFGFFQRSRNAIMGAADAVRRVAAKGGFGEDYRRTEALIISI 427
Query: 430 DGMIWTGGANGLLLQWDPNGNRLQDFQYLPFAVQCLCTFGSQIWVGYMNGIVQVLDLEGN 489
DG+IWTG ANGLL+QWD NGNRL +FQY AVQC CTFG ++WVGY +G +QVLDLEGN
Sbjct: 428 DGIIWTGCANGLLVQWDGNGNRLHEFQYHSSAVQCFCTFGLRMWVGYASGTIQVLDLEGN 487
Query: 490 LLGGWVAHSSPVIKMAVGAGYIFTLANHGGIRGWNVTSPGPLDSILCKELAGKEFLYTRM 549
L+GGW+AHSSPVIKM+VG GY+FTLANHGGIRGWN+ SPGPLD+IL ELAGKEFLYT++
Sbjct: 488 LIGGWLAHSSPVIKMSVGGGYVFTLANHGGIRGWNIMSPGPLDNILRSELAGKEFLYTKI 547
Query: 550 ENLKILAGTWNVGQGRASQDALISWLGSAASDVGIVVVGLQEVEMGAGFLAMSAAKETVG 609
ENLKILAGTWNV QGRAS+D+LISWLGSAA DVGIVVVGLQEVEMGAG LAMSAAKETVG
Sbjct: 548 ENLKILAGTWNVAQGRASRDSLISWLGSAAGDVGIVVVGLQEVEMGAGVLAMSAAKETVG 607
Query: 610 LEGSAVGHWWLDMIGKILDDGSTFERVGSRQLAGLLIAVWVRKNLKDYVGDVDVAAVPCG 669
LEGS++G WWL+MIG+ILD+GSTFERVGSRQLAGLLIAVWVR +LK +VGD+D AAVPCG
Sbjct: 608 LEGSSLGQWWLEMIGRILDEGSTFERVGSRQLAGLLIAVWVRNSLKGHVGDIDAAAVPCG 667
Query: 670 FGRAIGNKGAVGLRVRVYDRIMCFVNCHFAAHLEAVNRRNADFDHVYRTMTFCRPSNLCS 729
FGRAIGNKGAVGLR+RVY+R MCFVNCHFAAHLEAVNRRNADFDHVYRTM F RPSN +
Sbjct: 668 FGRAIGNKGAVGLRIRVYNRTMCFVNCHFAAHLEAVNRRNADFDHVYRTMNFVRPSNHFN 727
Query: 730 AAAAGASSVVQMLRSTNPLSGLTVEGVPELSEADMVIFLGDFNYRLDGITYDEARDFISQ 789
AA M+ +N + EG+P+LSEADMVIFLGDFNYRLD I+YDEARDFISQ
Sbjct: 728 TAAG-------MVMGSN-----SAEGMPDLSEADMVIFLGDFNYRLDDISYDEARDFISQ 775
Query: 790 RCFDWLRERDQLRAEMEAGNVFQGMREADIKFPPTYKFEKHLAGLA 835
RCFDWLRERDQLRAEMEAGNVFQGMREA I+FPPTYKF+KH GLA
Sbjct: 776 RCFDWLRERDQLRAEMEAGNVFQGMREAIIRFPPTYKFDKHQPGLA 821
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356574838|ref|XP_003555551.1| PREDICTED: type II inositol-1,4,5-trisphosphate 5-phosphatase FRA3-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1115 bits (2883), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 564/820 (68%), Positives = 661/820 (80%), Gaps = 36/820 (4%)
Query: 31 FDRYSSS---LSPSSSEDDETESHPSNSTIKRLDYMMEFLERKLSSSATTTNEKKRFASS 87
FDR +SS L SSS+DD + SH ST +RLDYM++FL+RKLSS + +R +S
Sbjct: 59 FDRQTSSRIYLHSSSSDDDVSPSHSIQSTNRRLDYMLQFLDRKLSSD----HAHRRHSSG 114
Query: 88 S---SLPEYIGKGGDIPMFKPPVRAALHPARPPSLEVKPHPLRETQIGCFLRTIVCTEEQ 144
S LPE++ KGG +F+ P R A+HPARPPSLE++PHPLRETQIG FLR IV TE Q
Sbjct: 115 SRAAQLPEFVAKGGGAGIFRLPARGAVHPARPPSLELRPHPLRETQIGRFLRNIVSTESQ 174
Query: 145 LWAGGENGLRVWNLKELYDE--SESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEA 202
LWA E G+R WN K+LY + V G++ +APF+ESV S +C+V DE
Sbjct: 175 LWAASECGVRFWNFKDLYASWCGVGEEEGVVARNGDEESAPFRESV-WTSPTLCLVADEG 233
Query: 203 SGVVWSGHRDGRIMCWKMNARL-------LDSDDGFGEVLSWQAHRGPVLSLCISSYGDL 255
+ +VWSGH+DG+I CWKM+ D + F E LSW AHRGPVLSL +SYGDL
Sbjct: 234 NRLVWSGHKDGKIRCWKMDDDDDDNNNNNCDWSNRFTESLSWHAHRGPVLSLTFTSYGDL 293
Query: 256 WSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIK 315
WSGSEGGGIKIWP EA+EK++ L EERH+AA+ VERSY+DLRS LS NGFS++LTSD+K
Sbjct: 294 WSGSEGGGIKIWPLEAVEKSIHLTKEERHSAAIFVERSYVDLRSQLSTNGFSNMLTSDVK 353
Query: 316 NLLSDHSRAKVWSAGFLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTK 375
L+SD+SRAKVWSAG+ SFALWDARTRELLKVFN DGQIENR+D+S + DF++E
Sbjct: 354 YLVSDNSRAKVWSAGYFSFALWDARTRELLKVFNSDGQIENRLDVSSIQDFSVE------ 407
Query: 376 IVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGMIWT 435
+++SS+KDK QSS GFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEAL +IDGMIWT
Sbjct: 408 LISSSRKDKTQSSIGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALVVTIDGMIWT 467
Query: 436 GGANGLLLQWDPNGNRLQDFQYLPFAVQCLCTFGSQIWVGYMNGIVQVLDLEGNLLGGWV 495
G +GLL+QWD NGNR+QDF Y ++QC CTFG QIWVGY++G VQVLDL+G+L+GGWV
Sbjct: 468 GCTSGLLVQWDGNGNRIQDFLYHSSSIQCFCTFGMQIWVGYVSGTVQVLDLKGSLIGGWV 527
Query: 496 AHSSPVIKMAVGAGYIFTLANHGGIRGWNVTSPGPLDSILCKELAGKEFLYTRMENLKIL 555
AH SP++KM VGAGY+F LANHGGIRGWN+TSPGPLDSIL EL GKEFLYT++EN+KIL
Sbjct: 528 AHGSPIVKMTVGAGYVFALANHGGIRGWNITSPGPLDSILRSELGGKEFLYTKIENIKIL 587
Query: 556 AGTWNVGQGRASQDALISWLGSAASDVGIVVVGLQEVEMGAGFLAMSAAKETVGLEGSAV 615
+GTWNVGQG+AS D+L SWLGS ASDV +VVVGLQEVEMGAGFLAMSAAKETVGLEGS+V
Sbjct: 588 SGTWNVGQGKASLDSLTSWLGSVASDVSLVVVGLQEVEMGAGFLAMSAAKETVGLEGSSV 647
Query: 616 GHWWLDMIGKILDDGSTFERVGSRQLAGLLIAVWVRKNLKDYVGDVDVAAVPCGFGRAIG 675
G WWLDMI K LD+GSTFER+GSRQLAGL+IAVWV+ N++ +VGDV+VAAVPCGFGRAIG
Sbjct: 648 GQWWLDMIDKTLDEGSTFERIGSRQLAGLVIAVWVKTNIRFHVGDVEVAAVPCGFGRAIG 707
Query: 676 NKGAVGLRVRVYDRIMCFVNCHFAAHLEAVNRRNADFDHVYRTMTFCRPSNLCSAAAAGA 735
NKGAVGLR+RVYDRIMCFVNCHFAAHL+AV RRNADFDHVYRTM+F RP+NL + AA
Sbjct: 708 NKGAVGLRIRVYDRIMCFVNCHFAAHLDAVGRRNADFDHVYRTMSFSRPTNLLNTTAALI 767
Query: 736 SSVVQMLRSTNPLSGLTVEGVPELSEADMVIFLGDFNYRLDGITYDEARDFISQRCFDWL 795
+ + EG+PELSEADMV+FLGDFNYRLD I+YDEARDF+SQRCFDWL
Sbjct: 768 LEI----------GFQSAEGMPELSEADMVVFLGDFNYRLDDISYDEARDFVSQRCFDWL 817
Query: 796 RERDQLRAEMEAGNVFQGMREADIKFPPTYKFEKHLAGLA 835
RERDQLRAEMEAGNVFQGMREA I FPPTYKFE+H GLA
Sbjct: 818 RERDQLRAEMEAGNVFQGMREAIITFPPTYKFERHQVGLA 857
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|42562979|ref|NP_176736.2| Type II inositol-1,4,5-trisphosphate 5-phosphatase FRA3 [Arabidopsis thaliana] gi|59799523|sp|Q84W55.2|IP5P4_ARATH RecName: Full=Type II inositol 1,4,5-trisphosphate 5-phosphatase FRA3; AltName: Full=Protein FRAGILE FIBER 3 gi|56405846|gb|AAV87313.1| type II inositol polyphosphate 5-phosphatase [Arabidopsis thaliana] gi|56405854|gb|AAV87317.1| type II inositol polyphosphate 5-phosphatase [Arabidopsis thaliana] gi|332196277|gb|AEE34398.1| Type II inositol-1,4,5-trisphosphate 5-phosphatase FRA3 [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 1113 bits (2880), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 557/812 (68%), Positives = 652/812 (80%), Gaps = 24/812 (2%)
Query: 30 IFDRYSSSLSPSSSEDDETESHPS-NSTIKRLDYMMEFLERKLSSSATTTNEKKRFASSS 88
+F+R + S S SS +D ES PS + + KR+DYM++FL+R+LS S
Sbjct: 28 LFNRSAYSSSSSSGDD---ESQPSVDDSNKRIDYMIQFLDRRLSEDGNHDGIGDG-NGSD 83
Query: 89 SLPEYIGKGGDIPMFKPPVRAALHPARPPSLEVKPHPLRETQIGCFLRTIVCTEEQLWAG 148
SLPE++GK G+ +FK P+R+A+HP RPPSL+V+PHPLRETQIG FLRT+ TE QLW G
Sbjct: 84 SLPEFVGKCGESGIFKVPIRSAVHPNRPPSLDVRPHPLRETQIGRFLRTMTSTERQLWTG 143
Query: 149 GENG-LRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVK---GVSSVMCMVGDEASG 204
GE+G LRVW ELY V + TAP+KES+ G ++V+CM+GDE S
Sbjct: 144 GEDGALRVWEFSELYGSGRGLEV--------EDTAPYKESLGNEFGSAAVVCMIGDEGSR 195
Query: 205 VVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGDLWSGSEGGGI 264
VVWSGHRDGRI CW+ L D G E LSWQAHRGPVLS+ IS+YGD+WSGSEGG +
Sbjct: 196 VVWSGHRDGRIRCWR-----LRGDHGIEEALSWQAHRGPVLSIAISAYGDIWSGSEGGAL 250
Query: 265 KIWPWE-AIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSR 323
K+WPW+ A+ K+LSLK EERH AAL VERSYID R+ +S NGF++ LTSD+ L+SDH+R
Sbjct: 251 KVWPWDGALGKSLSLKMEERHMAALAVERSYIDPRNMVSANGFANTLTSDVTFLVSDHTR 310
Query: 324 AKVWSAGFLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKD 383
A+VWSA L+FA+WDARTR+L+KVFNIDGQ+ENR + S+ PDF E+E K K VT+SKK+
Sbjct: 311 ARVWSASPLTFAIWDARTRDLIKVFNIDGQLENRPENSVYPDFGSEEEGKMK-VTASKKE 369
Query: 384 KAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGMIWTGGANGLLL 443
KAQSS GFFQRSRNAIMGAADAVRR A KGGF DD+R+TEA+ S+DGMIWTG +NG+L+
Sbjct: 370 KAQSSLGFFQRSRNAIMGAADAVRRAATKGGFCDDSRKTEAIVISVDGMIWTGSSNGILM 429
Query: 444 QWDPNGNRLQDFQYLPFAVQCLCTFGSQIWVGYMNGIVQVLDLEGNLLGGWVAHSSPVIK 503
+WD NGN LQ+F Y + C+ TF S++WVGY NG VQV DLEG LLGGWVAHS PVIK
Sbjct: 430 RWDGNGNCLQEFAYESSGILCMFTFCSRLWVGYSNGTVQVWDLEGKLLGGWVAHSGPVIK 489
Query: 504 MAVGAGYIFTLANHGGIRGWNVTSPGPLDSILCKELAGKEFLYTRMENLKILAGTWNVGQ 563
MA+GAGY+FTLANHGGIRGWNVTSPGPLD++L ELAGKEFLY+R+ENLKILAGTWNVG+
Sbjct: 490 MAIGAGYLFTLANHGGIRGWNVTSPGPLDNVLRAELAGKEFLYSRIENLKILAGTWNVGE 549
Query: 564 GRASQDALISWLGSAASDVGIVVVGLQEVEMGAGFLAMSAAKETVGLEGSAVGHWWLDMI 623
GRAS D+L+SWLG AA+ V IVVVGLQEVEMGAG LAMSAAKETVGLEGS +G WWLDMI
Sbjct: 550 GRASTDSLVSWLGCAATGVEIVVVGLQEVEMGAGVLAMSAAKETVGLEGSPLGQWWLDMI 609
Query: 624 GKILDDGSTFERVGSRQLAGLLIAVWVRKNLKDYVGDVDVAAVPCGFGRAIGNKGAVGLR 683
GK LD+GS+F RVGSRQLAGLLI VWVR +LK +VGDVD AAVPCGFGRAIGNKGAVG+R
Sbjct: 610 GKTLDEGSSFVRVGSRQLAGLLICVWVRHDLKPHVGDVDAAAVPCGFGRAIGNKGAVGVR 669
Query: 684 VRVYDRIMCFVNCHFAAHLEAVNRRNADFDHVYRTMTFCRPSNLCSAAAAGASSVVQMLR 743
+R+YDR++CFVNCHFAAHLEAVNRRNADFDHVYRTMTF R S+ +A AGAS V M R
Sbjct: 670 LRMYDRVLCFVNCHFAAHLEAVNRRNADFDHVYRTMTFSRQSSSLNAGVAGASFGVTMPR 729
Query: 744 STNPLSGLTVEGVPELSEADMVIFLGDFNYRLDGITYDEARDFISQRCFDWLRERDQLRA 803
N L T+E PELSEADMVIFLGDFNYRLD ITYDE RDFISQRCFDWLRE+DQL
Sbjct: 730 GGNALGVNTIEARPELSEADMVIFLGDFNYRLDDITYDETRDFISQRCFDWLREKDQLHT 789
Query: 804 EMEAGNVFQGMREADIKFPPTYKFEKHLAGLA 835
EMEAGNVFQGMREA I+FPPTYKFE+H AGLA
Sbjct: 790 EMEAGNVFQGMREAIIRFPPTYKFERHQAGLA 821
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|4688596|emb|CAB41466.1| inositol 1,4,5-trisphosphate 5-phosphatase [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 1113 bits (2880), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 557/812 (68%), Positives = 652/812 (80%), Gaps = 24/812 (2%)
Query: 30 IFDRYSSSLSPSSSEDDETESHPS-NSTIKRLDYMMEFLERKLSSSATTTNEKKRFASSS 88
+F+R + S S SS +D ES PS + + KR+DYM++FL+R+LS S
Sbjct: 28 LFNRSAYSSSSSSGDD---ESQPSVDDSNKRIDYMIQFLDRRLSEDGNHDGIGDG-NGSD 83
Query: 89 SLPEYIGKGGDIPMFKPPVRAALHPARPPSLEVKPHPLRETQIGCFLRTIVCTEEQLWAG 148
SLPE++GK G+ +FK P+R+A+HP RPPSL+V+PHPLRETQIG FLRT+ TE QLW G
Sbjct: 84 SLPEFVGKCGESGIFKVPIRSAVHPNRPPSLDVRPHPLRETQIGRFLRTMTSTERQLWTG 143
Query: 149 GENG-LRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVK---GVSSVMCMVGDEASG 204
GE+G LRVW ELY V + TAP+KES+ G ++V+CM+GDE S
Sbjct: 144 GEDGALRVWEFSELYGSGRGLEV--------EDTAPYKESLGNEFGSAAVVCMIGDEGSR 195
Query: 205 VVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGDLWSGSEGGGI 264
VVWSGHRDGRI CW+ L D G E LSWQAHRGPVLS+ IS+YGD+WSGSEGG +
Sbjct: 196 VVWSGHRDGRIRCWR-----LRGDHGIEEALSWQAHRGPVLSIAISAYGDIWSGSEGGAL 250
Query: 265 KIWPWE-AIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSR 323
K+WPW+ A+ K+LSLK EERH AAL VERSYID R+ +S NGF++ LTSD+ L+SDH+R
Sbjct: 251 KVWPWDGALGKSLSLKMEERHMAALAVERSYIDPRNMVSANGFANTLTSDVTFLVSDHTR 310
Query: 324 AKVWSAGFLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKD 383
A+VWSA L+FA+WDARTR+L+KVFNIDGQ+ENR + S+ PDF E+E K K VT+SKK+
Sbjct: 311 ARVWSASPLTFAIWDARTRDLIKVFNIDGQLENRPENSVYPDFGSEEEGKMK-VTASKKE 369
Query: 384 KAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGMIWTGGANGLLL 443
KAQSS GFFQRSRNAIMGAADAVRR A KGGF DD+R+TEA+ S+DGMIWTG +NG+L+
Sbjct: 370 KAQSSLGFFQRSRNAIMGAADAVRRAATKGGFCDDSRKTEAIVISVDGMIWTGSSNGILM 429
Query: 444 QWDPNGNRLQDFQYLPFAVQCLCTFGSQIWVGYMNGIVQVLDLEGNLLGGWVAHSSPVIK 503
+WD NGN LQ+F Y + C+ TF S++WVGY NG VQV DLEG LLGGWVAHS PVIK
Sbjct: 430 RWDGNGNCLQEFAYESSGILCMFTFCSRLWVGYSNGTVQVWDLEGKLLGGWVAHSGPVIK 489
Query: 504 MAVGAGYIFTLANHGGIRGWNVTSPGPLDSILCKELAGKEFLYTRMENLKILAGTWNVGQ 563
MA+GAGY+FTLANHGGIRGWNVTSPGPLD++L ELAGKEFLY+R+ENLKILAGTWNVG+
Sbjct: 490 MAIGAGYLFTLANHGGIRGWNVTSPGPLDNVLRAELAGKEFLYSRIENLKILAGTWNVGE 549
Query: 564 GRASQDALISWLGSAASDVGIVVVGLQEVEMGAGFLAMSAAKETVGLEGSAVGHWWLDMI 623
GRAS D+L+SWLG AA+ V IVVVGLQEVEMGAG LAMSAAKETVGLEGS +G WWLDMI
Sbjct: 550 GRASTDSLVSWLGCAATGVEIVVVGLQEVEMGAGVLAMSAAKETVGLEGSPLGQWWLDMI 609
Query: 624 GKILDDGSTFERVGSRQLAGLLIAVWVRKNLKDYVGDVDVAAVPCGFGRAIGNKGAVGLR 683
GK LD+GS+F RVGSRQLAGLLI VWVR +LK +VGDVD AAVPCGFGRAIGNKGAVG+R
Sbjct: 610 GKTLDEGSSFVRVGSRQLAGLLICVWVRHDLKPHVGDVDAAAVPCGFGRAIGNKGAVGVR 669
Query: 684 VRVYDRIMCFVNCHFAAHLEAVNRRNADFDHVYRTMTFCRPSNLCSAAAAGASSVVQMLR 743
+R+YDR++CFVNCHFAAHLEAVNRRNADFDHVYRTMTF R S+ +A AGAS V M R
Sbjct: 670 LRMYDRVLCFVNCHFAAHLEAVNRRNADFDHVYRTMTFSRQSSSLNAGVAGASFGVTMPR 729
Query: 744 STNPLSGLTVEGVPELSEADMVIFLGDFNYRLDGITYDEARDFISQRCFDWLRERDQLRA 803
N L T+E PELSEADMVIFLGDFNYRLD ITYDE RDFISQRCFDWLRE+DQL
Sbjct: 730 GGNALGVNTIEARPELSEADMVIFLGDFNYRLDDITYDETRDFISQRCFDWLREKDQLHT 789
Query: 804 EMEAGNVFQGMREADIKFPPTYKFEKHLAGLA 835
EMEAGNVFQGMREA I+FPPTYKFE+H AGLA
Sbjct: 790 EMEAGNVFQGMREAIIRFPPTYKFERHQAGLA 821
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297841089|ref|XP_002888426.1| hypothetical protein ARALYDRAFT_475657 [Arabidopsis lyrata subsp. lyrata] gi|297334267|gb|EFH64685.1| hypothetical protein ARALYDRAFT_475657 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 1113 bits (2879), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 557/835 (66%), Positives = 659/835 (78%), Gaps = 25/835 (2%)
Query: 8 DFSDDVVS---SATSHSYTDHQGTRIFDRYSSSLSPSSSEDDETESHPS-NSTIKRLDYM 63
D +DDV S +++ + +F+R + S S SS +D ES PS + + KR+DYM
Sbjct: 7 DQNDDVFSFFSPPYESTFSAATPSTLFNRSAYSSSSSSGDD---ESQPSVDDSNKRIDYM 63
Query: 64 MEFLERKLSSSATTTNEKKRFASSSSLPEYIGKGGDIPMFKPPVRAALHPARPPSLEVKP 123
++FL+R+LS SLPE++GK G+ +FK P+R+A+HP RPPSL+V+P
Sbjct: 64 IQFLDRRLSEDGNHDGIGDG-NGPDSLPEFVGKCGESGIFKVPIRSAVHPNRPPSLDVRP 122
Query: 124 HPLRETQIGCFLRTIVCTEEQLWAGGENG-LRVWNLKELYDESESDSVSVSKSKGEDGTA 182
HPLRETQIG FLRT+ TE QLW GGE+G LRVW ELY V + TA
Sbjct: 123 HPLRETQIGRFLRTMTSTERQLWTGGEDGALRVWEFSELYGSGRGLEV--------EDTA 174
Query: 183 PFKESVKGV--SSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAH 240
P+KES+ S+V+CM+GDE S VVWSGHRDGRI CW+ L D G E LSWQAH
Sbjct: 175 PYKESLGNEIGSAVVCMIGDEGSRVVWSGHRDGRIRCWR-----LRGDHGIEEALSWQAH 229
Query: 241 RGPVLSLCISSYGDLWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSH 300
RGPVLS+ +S+YGD+WSGSEGG +K+WPW+A+ K+LSLK EERH AAL VERSYID R+
Sbjct: 230 RGPVLSIAVSAYGDIWSGSEGGALKVWPWDALGKSLSLKMEERHMAALSVERSYIDPRNM 289
Query: 301 LSVNGFSSILTSDIKNLLSDHSRAKVWSAGFLSFALWDARTRELLKVFNIDGQIENRVDM 360
+S NGF++ LTSD+ L+SDH+RA+VWSA L+FALWDARTR+L+KVFNIDGQ+ENR +
Sbjct: 290 VSANGFANTLTSDVTFLVSDHTRARVWSASPLTFALWDARTRDLIKVFNIDGQLENRTEN 349
Query: 361 SLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNR 420
S+ PDF E+E K KI T+SKK+KAQSS GFFQRSRNA+MGAADAVRR A KGGF DD+R
Sbjct: 350 SVYPDFGSEEEGKMKI-TASKKEKAQSSLGFFQRSRNALMGAADAVRRAATKGGFCDDSR 408
Query: 421 RTEALTTSIDGMIWTGGANGLLLQWDPNGNRLQDFQYLPFAVQCLCTFGSQIWVGYMNGI 480
+TEA+ S+DG+IWTG +NG+L++WD NGN LQ+F Y + C+ TF S++WVGY NG
Sbjct: 409 KTEAIVISVDGLIWTGSSNGVLMRWDGNGNCLQEFSYQSSGILCMFTFCSRLWVGYSNGT 468
Query: 481 VQVLDLEGNLLGGWVAHSSPVIKMAVGAGYIFTLANHGGIRGWNVTSPGPLDSILCKELA 540
VQVLDLEG LLGGWVAHS PVIKMA+GAGY+FTLANHGGIRGWNVTSPGPLD++L ELA
Sbjct: 469 VQVLDLEGKLLGGWVAHSGPVIKMAIGAGYLFTLANHGGIRGWNVTSPGPLDNVLRAELA 528
Query: 541 GKEFLYTRMENLKILAGTWNVGQGRASQDALISWLGSAASDVGIVVVGLQEVEMGAGFLA 600
GKEFLY+R+ENLKILAGTWNVG+GRAS D+L+SWLG A+ V IVVVGLQEVEMGAG LA
Sbjct: 529 GKEFLYSRIENLKILAGTWNVGEGRASTDSLVSWLGCTATGVEIVVVGLQEVEMGAGVLA 588
Query: 601 MSAAKETVGLEGSAVGHWWLDMIGKILDDGSTFERVGSRQLAGLLIAVWVRKNLKDYVGD 660
MSAAKETVGLEGS +G WWLDMIGK LD+GS+F RVGSRQLAGLLI VWVR +LK YVGD
Sbjct: 589 MSAAKETVGLEGSPLGQWWLDMIGKTLDEGSSFVRVGSRQLAGLLICVWVRHDLKPYVGD 648
Query: 661 VDVAAVPCGFGRAIGNKGAVGLRVRVYDRIMCFVNCHFAAHLEAVNRRNADFDHVYRTMT 720
VD AAVPCGFGRAIGNKGAVG+R+R+YDR++CFVNCHFAAHL+AVNRRNADFDHVYRTMT
Sbjct: 649 VDAAAVPCGFGRAIGNKGAVGVRLRMYDRVLCFVNCHFAAHLDAVNRRNADFDHVYRTMT 708
Query: 721 FCRPSNLCSAAAAGASSVVQMLRSTNPLSGLTVEGVPELSEADMVIFLGDFNYRLDGITY 780
F R S+ +A AGAS V + R N VE PELSEADM+IFLGDFNYRLD ITY
Sbjct: 709 FSRQSSSLNAGVAGASFGVSVPRGGNATGVNIVEARPELSEADMIIFLGDFNYRLDDITY 768
Query: 781 DEARDFISQRCFDWLRERDQLRAEMEAGNVFQGMREADIKFPPTYKFEKHLAGLA 835
DE RDFISQRCFDWLRE+DQL AEMEAGNVFQGMREA I+FPPTYKFE+H AGLA
Sbjct: 769 DETRDFISQRCFDWLREKDQLHAEMEAGNVFQGMREAIIRFPPTYKFERHQAGLA 823
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|28393619|gb|AAO42229.1| unknown protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 1110 bits (2872), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 556/812 (68%), Positives = 651/812 (80%), Gaps = 24/812 (2%)
Query: 30 IFDRYSSSLSPSSSEDDETESHPS-NSTIKRLDYMMEFLERKLSSSATTTNEKKRFASSS 88
+F+R + S S SS +D ES PS + + KR+DYM++FL+R+LS S
Sbjct: 28 LFNRSAYSSSSSSGDD---ESQPSVDDSNKRIDYMIQFLDRRLSEDGNHDGIGDG-NGSD 83
Query: 89 SLPEYIGKGGDIPMFKPPVRAALHPARPPSLEVKPHPLRETQIGCFLRTIVCTEEQLWAG 148
SLPE++GK G+ +FK P+R+A+HP RPPSL+V+PHPLRETQIG FLRT+ TE QLW G
Sbjct: 84 SLPEFVGKCGESGIFKVPIRSAVHPNRPPSLDVRPHPLRETQIGRFLRTMTSTERQLWTG 143
Query: 149 GENG-LRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVK---GVSSVMCMVGDEASG 204
GE+G LRVW ELY V + TAP+KES+ G ++V+CM+GDE S
Sbjct: 144 GEDGALRVWEFSELYGSGRGLEV--------EDTAPYKESLGNEFGSAAVVCMIGDEGSR 195
Query: 205 VVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGDLWSGSEGGGI 264
VVWSGHRDGRI CW+ L D G E LSWQAHRGPVLS+ IS+YGD+WSGSEGG +
Sbjct: 196 VVWSGHRDGRIRCWR-----LRGDHGIEEALSWQAHRGPVLSIAISAYGDIWSGSEGGAL 250
Query: 265 KIWPWE-AIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSR 323
K+WPW+ A+ K+LSLK EERH AAL VERSYID R+ +S NGF++ LTSD+ L+SDH+R
Sbjct: 251 KVWPWDGALGKSLSLKMEERHMAALAVERSYIDPRNMVSANGFANTLTSDVTFLVSDHTR 310
Query: 324 AKVWSAGFLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKD 383
A+VWSA L+FA+WDARTR+L+KVFNIDGQ+ENR + S+ PDF E+E K K VT+SKK+
Sbjct: 311 ARVWSASPLTFAIWDARTRDLIKVFNIDGQLENRPENSVYPDFGSEEEGKMK-VTASKKE 369
Query: 384 KAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGMIWTGGANGLLL 443
KAQSS GFFQRSRNAIMGAADAVRR A KGGF DD+R+TEA+ S+DGMIWTG +NG+L+
Sbjct: 370 KAQSSLGFFQRSRNAIMGAADAVRRAATKGGFCDDSRKTEAIVISVDGMIWTGSSNGILM 429
Query: 444 QWDPNGNRLQDFQYLPFAVQCLCTFGSQIWVGYMNGIVQVLDLEGNLLGGWVAHSSPVIK 503
+WD NGN LQ+F Y + C+ TF S++WVGY NG VQV DLEG LLGGWVAHS PVIK
Sbjct: 430 RWDGNGNCLQEFAYESSGILCMFTFCSRLWVGYSNGTVQVWDLEGKLLGGWVAHSGPVIK 489
Query: 504 MAVGAGYIFTLANHGGIRGWNVTSPGPLDSILCKELAGKEFLYTRMENLKILAGTWNVGQ 563
MA+GAGY+FTLANHGGIRGWNVTSPGPLD++L ELAGKEFLY+R+ENLKILAGTWNVG+
Sbjct: 490 MAIGAGYLFTLANHGGIRGWNVTSPGPLDNVLRAELAGKEFLYSRIENLKILAGTWNVGE 549
Query: 564 GRASQDALISWLGSAASDVGIVVVGLQEVEMGAGFLAMSAAKETVGLEGSAVGHWWLDMI 623
GRAS D+L+SWLG AA+ V IVVVGLQEVEMGA LAMSAAKETVGLEGS +G WWLDMI
Sbjct: 550 GRASTDSLVSWLGCAATGVEIVVVGLQEVEMGARVLAMSAAKETVGLEGSPLGQWWLDMI 609
Query: 624 GKILDDGSTFERVGSRQLAGLLIAVWVRKNLKDYVGDVDVAAVPCGFGRAIGNKGAVGLR 683
GK LD+GS+F RVGSRQLAGLLI VWVR +LK +VGDVD AAVPCGFGRAIGNKGAVG+R
Sbjct: 610 GKTLDEGSSFVRVGSRQLAGLLICVWVRHDLKPHVGDVDAAAVPCGFGRAIGNKGAVGVR 669
Query: 684 VRVYDRIMCFVNCHFAAHLEAVNRRNADFDHVYRTMTFCRPSNLCSAAAAGASSVVQMLR 743
+R+YDR++CFVNCHFAAHLEAVNRRNADFDHVYRTMTF R S+ +A AGAS V M R
Sbjct: 670 LRMYDRVLCFVNCHFAAHLEAVNRRNADFDHVYRTMTFSRQSSSLNAGVAGASFGVTMPR 729
Query: 744 STNPLSGLTVEGVPELSEADMVIFLGDFNYRLDGITYDEARDFISQRCFDWLRERDQLRA 803
N L T+E PELSEADMVIFLGDFNYRLD ITYDE RDFISQRCFDWLRE+DQL
Sbjct: 730 GGNALGVNTIEARPELSEADMVIFLGDFNYRLDDITYDETRDFISQRCFDWLREKDQLHT 789
Query: 804 EMEAGNVFQGMREADIKFPPTYKFEKHLAGLA 835
EMEAGNVFQGMREA I+FPPTYKFE+H AGLA
Sbjct: 790 EMEAGNVFQGMREAIIRFPPTYKFERHQAGLA 821
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356535258|ref|XP_003536165.1| PREDICTED: type II inositol-1,4,5-trisphosphate 5-phosphatase FRA3-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1110 bits (2871), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 554/791 (70%), Positives = 650/791 (82%), Gaps = 25/791 (3%)
Query: 54 NSTIKRLDYMMEFLERKLSSSATTTNEKKRFASSSS---LPEYIGKGGDIPMFKPPVRAA 110
ST +RLDYM++FL+RKLS+ + +R +S S LPE++ KGG +F+ P R A
Sbjct: 45 QSTNRRLDYMLQFLDRKLSAD----HGHRRHSSGSRAAPLPEFVAKGGGAGIFRLPARGA 100
Query: 111 LHPARPPSLEVKPHPLRETQIGCFLRTIVCTEEQLWAGGENGLRVWNLKELYDE-SESDS 169
+HPARPPSLE++PHPLRETQIG FLR IV ++ QLWA E G+R WN K+LY
Sbjct: 101 VHPARPPSLELRPHPLRETQIGRFLRNIVSSQSQLWAASECGVRFWNFKDLYASWCGVGG 160
Query: 170 VSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDS-- 227
V G++ +APF+ESV S +C+V DE + +VWSGH+DG+I CWKM+ ++
Sbjct: 161 EEVVARSGDEESAPFRESV-WTSPALCLVADEGNRLVWSGHKDGKIRCWKMDDDDDNNDN 219
Query: 228 ---DDGFGEVLSWQAHRGPVLSLCISSYGDLWSGSEGGGIKIWPWEAIEKALSLKPEERH 284
+ F E LSW AHRGPVLSL +SYGDLWSGSEGGGIKIWPWEA+EK++ L EERH
Sbjct: 220 CDWSNRFTESLSWHAHRGPVLSLTFTSYGDLWSGSEGGGIKIWPWEAVEKSIHLTKEERH 279
Query: 285 TAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGFLSFALWDARTREL 344
+A + VERSY+DLRS LS NGFS++LTSD+K L+SD+ RAKVWSAG+ SFALWDARTREL
Sbjct: 280 SAVIFVERSYVDLRSQLSTNGFSNMLTSDVKYLVSDNLRAKVWSAGYFSFALWDARTREL 339
Query: 345 LKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAAD 404
LKVFN +GQIENR+D+S + DF++E +V+SS+KDK QSS GFFQRSRNAIMGAAD
Sbjct: 340 LKVFNSEGQIENRLDVSSIQDFSVE------LVSSSRKDKTQSSIGFFQRSRNAIMGAAD 393
Query: 405 AVRRVAAKGGFGDDNRRTEALTTSIDGMIWTGGANGLLLQWDPNGNRLQDFQYLPFAVQC 464
AVRRVAAKGGFGDD+RR EAL +IDGMIWTG +GLL+QWD NGNR+QDF Y A+QC
Sbjct: 394 AVRRVAAKGGFGDDHRRIEALVVTIDGMIWTGCTSGLLVQWDGNGNRIQDFLYHSSAIQC 453
Query: 465 LCTFGSQIWVGYMNGIVQVLDLEGNLLGGWVAHSSPVIKMAVGAGYIFTLANHGGIRGWN 524
CTFG QIWVGY++G VQVLDL+GNL+GGWVAH SP++KM VGAGY+F LANHGGIRGWN
Sbjct: 454 FCTFGMQIWVGYVSGTVQVLDLKGNLIGGWVAHGSPIVKMTVGAGYVFALANHGGIRGWN 513
Query: 525 VTSPGPLDSILCKELAGKEFLYTRMENLKILAGTWNVGQGRASQDALISWLGSAASDVGI 584
+TSPGPLDSIL EL GKEFLYT++EN+KIL+GTWNVGQG+AS D+L SWLGS SDV +
Sbjct: 514 ITSPGPLDSILRSELGGKEFLYTKIENIKILSGTWNVGQGKASLDSLTSWLGSVVSDVSL 573
Query: 585 VVVGLQEVEMGAGFLAMSAAKETVGLEGSAVGHWWLDMIGKILDDGSTFERVGSRQLAGL 644
VVVGLQEVEMGAGFLAMSAAKETVGLEGS+VG WWLDMIGK LD+GSTFER+GSRQLAGL
Sbjct: 574 VVVGLQEVEMGAGFLAMSAAKETVGLEGSSVGQWWLDMIGKTLDEGSTFERIGSRQLAGL 633
Query: 645 LIAVWVRKNLKDYVGDVDVAAVPCGFGRAIGNKGAVGLRVRVYDRIMCFVNCHFAAHLEA 704
+IAVWV+ N++ +VGDV+VAAVPCGFGRAIGNKGAVGLR+RVYDRIMCFVNCHFAAHL+A
Sbjct: 634 VIAVWVKTNIRFHVGDVEVAAVPCGFGRAIGNKGAVGLRIRVYDRIMCFVNCHFAAHLDA 693
Query: 705 VNRRNADFDHVYRTMTFCRPSNLCSAAAAGASSVVQMLRSTNPLSGLTVEGVPELSEADM 764
V RRNADFDHVYRTM+F RP+NL + AAG SS V R TN + EG+PELSEADM
Sbjct: 694 VGRRNADFDHVYRTMSFSRPTNLLNTTAAGTSSSVPTFRGTN-----SAEGMPELSEADM 748
Query: 765 VIFLGDFNYRLDGITYDEARDFISQRCFDWLRERDQLRAEMEAGNVFQGMREADIKFPPT 824
V+FLGDFNYRLD I+YDEARDF+SQRCFDWLRERDQLRAEMEAGNVFQGMREA I FPPT
Sbjct: 749 VVFLGDFNYRLDDISYDEARDFVSQRCFDWLRERDQLRAEMEAGNVFQGMREAVITFPPT 808
Query: 825 YKFEKHLAGLA 835
YKFE+H AGLA
Sbjct: 809 YKFERHQAGLA 819
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449442781|ref|XP_004139159.1| PREDICTED: type II inositol 1,4,5-trisphosphate 5-phosphatase FRA3-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 1102 bits (2850), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 561/861 (65%), Positives = 672/861 (78%), Gaps = 38/861 (4%)
Query: 1 MDPPPLIDFSDDVVSSAT---SHSYTDH-----QGTRIFDRYSSSLSPS----------- 41
M+PPPLID D ++ ++SYT + G ++ ++ + S
Sbjct: 1 MEPPPLIDLRDGDGDDSSSSFTNSYTQNLNHLNHGFNYLNQEDTTRTYSPQFFDSSSSSS 60
Query: 42 SSEDDETESHPSNSTIKRLDYMMEFLERKLSSSATTTNEK-------KRFASSSSLPEYI 94
+E++ S+ ST KRLDYM++FL+RKLSS + + + + SSSSLPE+I
Sbjct: 61 DNENNGVSSNSVESTTKRLDYMLQFLDRKLSSQSVSYSNRDGDIQDSDYDGSSSSLPEFI 120
Query: 95 GKGGDIPMFKPPVRAALHPARPPSLEVKPHPLRETQIGCFLRTIVCTEEQLWAGGENGLR 154
G+GG +F+ PVRAA+HP RPPSLEV+PHPLRETQIGCF RT+ +E QLWAG E G+R
Sbjct: 121 GRGGGTGIFRLPVRAAVHPHRPPSLEVRPHPLRETQIGCFFRTVAGSESQLWAGSEYGVR 180
Query: 155 VWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGHRDGR 214
WN ++LY +E V G++ TAPF+ESV+ S +C+V DE + +VWSGH+DGR
Sbjct: 181 FWNFEDLYAAAEDMVVR----GGDEETAPFRESVR-TSPTLCLVADEGNRLVWSGHKDGR 235
Query: 215 IMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGDLWSGSEGGGIKIWPWEAIEK 274
I W+M+ L+S+D F E LSWQAHRGPV SL ++SYGDLWSGSEGG +K+W WEAIE+
Sbjct: 236 IRSWRMDIPSLNSNDHFTEALSWQAHRGPVFSLVMTSYGDLWSGSEGGALKVWSWEAIER 295
Query: 275 ALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGFLSF 334
ALS+ E H A+L++ERSY+DLR+ +SV+ FS+ T D+K LLSD S AKVWS LSF
Sbjct: 296 ALSMTEGENHMASLLMERSYVDLRTQVSVS-FSNTFTWDVKYLLSDDSTAKVWSGSDLSF 354
Query: 335 ALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQR 394
ALWDARTRELLKVFN DGQ+ENR+DM+ + DF +E V+ SKK+K QS+FGFFQR
Sbjct: 355 ALWDARTRELLKVFNTDGQLENRIDMTSVQDFTLEP------VSFSKKEKTQSAFGFFQR 408
Query: 395 SRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGMIWTGGANGLLLQWDPNGNRLQD 454
SRNAIMGAADAVRR A KG FGDDNRRTEAL +IDGMIWTG +GLL+QWD +GNRLQD
Sbjct: 409 SRNAIMGAADAVRRAAVKGAFGDDNRRTEALVITIDGMIWTGCTSGLLVQWDKHGNRLQD 468
Query: 455 FQYLPFAVQCLCTFGSQIWVGYMNGIVQVLDLEGNLLGGWVAHSSPVIKMAVGAGYIFTL 514
F + AVQCLCTFGS++WVGY +G VQVLDL+G LLGGWVAHS PVI+M G+GYIFTL
Sbjct: 469 FHHHSHAVQCLCTFGSRVWVGYASGTVQVLDLKGRLLGGWVAHSCPVIEMCAGSGYIFTL 528
Query: 515 ANHGGIRGWNVTSPGPLDSILCKELAGKEFLYTRMENLKILAGTWNVGQGRASQDALISW 574
ANHGGIRGWNVTSPGPLDSIL ELA KEF+YTRMENLKI GTWNVGQ +AS D+LISW
Sbjct: 529 ANHGGIRGWNVTSPGPLDSILRSELAAKEFMYTRMENLKIFTGTWNVGQEKASPDSLISW 588
Query: 575 LGSAASDVGIVVVGLQEVEMGAGFLAMSAAKETVGLEGSAVGHWWLDMIGKILDDGSTFE 634
LGS SDVGIVVVGLQEVEMGAGFLAMSAAKETVGLEGS++G WWLDMIGK L +GSTF+
Sbjct: 589 LGSVVSDVGIVVVGLQEVEMGAGFLAMSAAKETVGLEGSSLGQWWLDMIGKTLGEGSTFQ 648
Query: 635 RVGSRQLAGLLIAVWVRKNLKDYVGDVDVAAVPCGFGRAIGNKGAVGLRVRVYDRIMCFV 694
RVGSRQLAGLLIA+WVR N++ YVGDVD AAVPCGFGRAIGNKGAVGLR+RV+DR++CFV
Sbjct: 649 RVGSRQLAGLLIAIWVRSNIRAYVGDVDAAAVPCGFGRAIGNKGAVGLRIRVFDRVLCFV 708
Query: 695 NCHFAAHLEAVNRRNADFDHVYRTMTFCRPSNLCSAAAAGASSVVQMLRSTNPLSGLTVE 754
NCHFAAHLEAVNRRNADFDHVYR M+F RPSN AA +S Q +RS+N G +VE
Sbjct: 709 NCHFAAHLEAVNRRNADFDHVYRNMSFHRPSNPFGTTAACSSPTAQTVRSSNAFVGSSVE 768
Query: 755 GVPELSEADMVIFLGDFNYRLDGITYDEARDFISQRCFDWLRERDQLRAEMEAGNVFQGM 814
PELSE+D++IFLGDFNYRL+G++YDEARDFISQRCFDWL+E+DQLR EME+GNVFQGM
Sbjct: 769 MTPELSESDLIIFLGDFNYRLNGVSYDEARDFISQRCFDWLKEKDQLRTEMESGNVFQGM 828
Query: 815 READIKFPPTYKFEKHLAGLA 835
REA I FPPTYKFE+ GL+
Sbjct: 829 REAVITFPPTYKFERQQQGLS 849
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449485393|ref|XP_004157154.1| PREDICTED: LOW QUALITY PROTEIN: type II inositol 1,4,5-trisphosphate 5-phosphatase FRA3-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 1092 bits (2825), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 560/861 (65%), Positives = 667/861 (77%), Gaps = 38/861 (4%)
Query: 1 MDPPPLIDFSDDVVSSAT---SHSYTDH-----QGTRIFDRYSSSLSPS----------- 41
M+PPPLID D ++ ++SYT + G ++ ++ + S
Sbjct: 1 MEPPPLIDLRDGDGDDSSSSFTNSYTQNLNHLNHGFNYLNQEDTTRTYSPQFFDSSSSSS 60
Query: 42 SSEDDETESHPSNSTIKRLDYMMEFLERKLSSSATTTNEK-------KRFASSSSLPEYI 94
+E++ S+ ST KRLDYM++FL+RKLSS + + + SSSSLPE+I
Sbjct: 61 DNENNGVSSNSVESTTKRLDYMLQFLDRKLSSQSVSYSNHDGDIQDSDYDGSSSSLPEFI 120
Query: 95 GKGGDIPMFKPPVRAALHPARPPSLEVKPHPLRETQIGCFLRTIVCTEEQLWAGGENGLR 154
G+GG +F+ PVRAA+HP RPPSLEV+PHPLRETQIGCF RT+ +E QLWAG E G+R
Sbjct: 121 GRGGGTGIFRLPVRAAVHPHRPPSLEVRPHPLRETQIGCFFRTVAGSESQLWAGSEYGVR 180
Query: 155 VWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGHRDGR 214
WN ++LY +E V G++ TAPF+ESV+ S +C+V DE + +VWSGH+DGR
Sbjct: 181 FWNFEDLYAAAEDMVVR----GGDEETAPFRESVR-TSPTLCLVADEGNRLVWSGHKDGR 235
Query: 215 IMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGDLWSGSEGGGIKIWPWEAIEK 274
I W+M+ L+S+D F E LSWQAHRGPV SL S GDLWSGSEGG +K+W WEAIE+
Sbjct: 236 IRSWRMDIPSLNSNDHFTEALSWQAHRGPVFSLSFSLLGDLWSGSEGGALKVWSWEAIER 295
Query: 275 ALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGFLSF 334
ALS+ E H A+L+VERSY+DLR+ +SV+ FS+ T D+K LLSD S AKVWS LSF
Sbjct: 296 ALSMTEGENHMASLLVERSYVDLRTQVSVS-FSNTFTWDVKYLLSDDSTAKVWSGSDLSF 354
Query: 335 ALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQR 394
ALWDARTRELLKVFN DGQ+ENR+DM+ + DF +E V+ SKK+K QS+FGFFQR
Sbjct: 355 ALWDARTRELLKVFNTDGQLENRIDMTSVQDFTLEP------VSFSKKEKTQSAFGFFQR 408
Query: 395 SRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGMIWTGGANGLLLQWDPNGNRLQD 454
SRNAIMGAADAVRR A KG FGDDNRRTEAL +IDGMIWTG +GLL+QWD +GNRLQD
Sbjct: 409 SRNAIMGAADAVRRAAVKGAFGDDNRRTEALVITIDGMIWTGCTSGLLVQWDKHGNRLQD 468
Query: 455 FQYLPFAVQCLCTFGSQIWVGYMNGIVQVLDLEGNLLGGWVAHSSPVIKMAVGAGYIFTL 514
F + AVQCLCTFGS++WVGY +G VQVLDL+G LLGGWVAHS PVI+M G+GYIFTL
Sbjct: 469 FHHHSHAVQCLCTFGSRVWVGYASGTVQVLDLKGRLLGGWVAHSCPVIEMCAGSGYIFTL 528
Query: 515 ANHGGIRGWNVTSPGPLDSILCKELAGKEFLYTRMENLKILAGTWNVGQGRASQDALISW 574
ANHGGIRGWNVTSPGPLDSIL ELA KEF+YTRMENLKI GTWNVGQ +AS D+LISW
Sbjct: 529 ANHGGIRGWNVTSPGPLDSILRSELAAKEFMYTRMENLKIFTGTWNVGQEKASPDSLISW 588
Query: 575 LGSAASDVGIVVVGLQEVEMGAGFLAMSAAKETVGLEGSAVGHWWLDMIGKILDDGSTFE 634
LGS SDVGIVVVGLQEVEMGAGFLAMSAAKETVGLEGS++G WWLDMIGK L +GSTF+
Sbjct: 589 LGSVVSDVGIVVVGLQEVEMGAGFLAMSAAKETVGLEGSSLGQWWLDMIGKTLGEGSTFQ 648
Query: 635 RVGSRQLAGLLIAVWVRKNLKDYVGDVDVAAVPCGFGRAIGNKGAVGLRVRVYDRIMCFV 694
RVGSRQLAGLLIA+WVR N++ YVGDVD AAVPCGFGRAIGNKGAVGLR+RV+DR++CFV
Sbjct: 649 RVGSRQLAGLLIAIWVRSNIRAYVGDVDAAAVPCGFGRAIGNKGAVGLRIRVFDRVLCFV 708
Query: 695 NCHFAAHLEAVNRRNADFDHVYRTMTFCRPSNLCSAAAAGASSVVQMLRSTNPLSGLTVE 754
NCHFAAHLEAVNRRNADFDHVYR M+F RPSN AA +S Q +RS+N G +VE
Sbjct: 709 NCHFAAHLEAVNRRNADFDHVYRNMSFHRPSNPFGTTAACSSPTAQTVRSSNAFVGSSVE 768
Query: 755 GVPELSEADMVIFLGDFNYRLDGITYDEARDFISQRCFDWLRERDQLRAEMEAGNVFQGM 814
PELSE+D++IFLGDFNYRL+G++YDEARDFISQRCFDWL+E+DQLR EME+GN FQGM
Sbjct: 769 MTPELSESDLIIFLGDFNYRLNGVSYDEARDFISQRCFDWLKEKDQLRTEMESGNXFQGM 828
Query: 815 READIKFPPTYKFEKHLAGLA 835
REA I FPPTYKFE+ GL+
Sbjct: 829 REAVITFPPTYKFERQQQGLS 849
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 842 | ||||||
| TAIR|locus:2034141 | 1101 | FRA3 "FRAGILE FIBER3" [Arabido | 0.961 | 0.735 | 0.657 | 1.4e-293 | |
| TAIR|locus:2031933 | 1170 | 5PTASE13 "inositol-polyphospha | 0.750 | 0.540 | 0.630 | 2.8e-255 | |
| UNIPROTKB|F1NLK6 | 707 | INPP5B "Uncharacterized protei | 0.219 | 0.261 | 0.282 | 1.5e-27 | |
| UNIPROTKB|E1BB73 | 1005 | E1BB73 "Uncharacterized protei | 0.219 | 0.184 | 0.276 | 4e-26 | |
| DICTYBASE|DDB_G0292392 | 1379 | Dd5P3 "inositol 5-phosphatase" | 0.254 | 0.155 | 0.3 | 4.1e-26 | |
| MGI|MGI:103257 | 993 | Inpp5b "inositol polyphosphate | 0.217 | 0.184 | 0.279 | 3.7e-25 | |
| TAIR|locus:2141095 | 646 | IP5PII "AT4G18010" [Arabidopsi | 0.106 | 0.139 | 0.417 | 1.4e-24 | |
| ZFIN|ZDB-GENE-061110-61 | 952 | ocrl "oculocerebrorenal syndro | 0.216 | 0.191 | 0.293 | 2.9e-24 | |
| DICTYBASE|DDB_G0284187 | 1800 | Dd5P2 "inositol 5-phosphatase" | 0.199 | 0.093 | 0.350 | 1.2e-23 | |
| TAIR|locus:2077314 | 547 | AT3G63240 [Arabidopsis thalian | 0.106 | 0.164 | 0.418 | 1.5e-22 |
| TAIR|locus:2034141 FRA3 "FRAGILE FIBER3" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2819 (997.4 bits), Expect = 1.4e-293, P = 1.4e-293
Identities = 548/833 (65%), Positives = 644/833 (77%)
Query: 8 DFSDDVVSSATSHSYTDHQGTRIFDRYXXXXXXXXXXXXXXXXXXXNSTIKRLDYMMEFL 67
D +DDV S S S++ + +F+R + + KR+DYM++FL
Sbjct: 7 DQNDDVFSFF-SPSFSAATPSTLFNR--SAYSSSSSSGDDESQPSVDDSNKRIDYMIQFL 63
Query: 68 ERKLSSSATTTNEKKRFASSSSLPEYIGKGGDIPMFKPPVRAALHPARPPSLEVKPHPLR 127
+R+LS S SLPE++GK G+ +FK P+R+A+HP RPPSL+V+PHPLR
Sbjct: 64 DRRLSEDGNHDGIGDG-NGSDSLPEFVGKCGESGIFKVPIRSAVHPNRPPSLDVRPHPLR 122
Query: 128 ETQIGCFLRTIVCTEEQLWAGGENG-LRVWNLKELYXXXXXXXXXXXXXXXXXXTAPFKE 186
ETQIG FLRT+ TE QLW GGE+G LRVW ELY TAP+KE
Sbjct: 123 ETQIGRFLRTMTSTERQLWTGGEDGALRVWEFSELYGSGRGLEVED--------TAPYKE 174
Query: 187 SVK---GVSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGP 243
S+ G ++V+CM+GDE S VVWSGHRDGRI CW++ D G E LSWQAHRGP
Sbjct: 175 SLGNEFGSAAVVCMIGDEGSRVVWSGHRDGRIRCWRLRG-----DHGIEEALSWQAHRGP 229
Query: 244 VLSLCISSYGDLWSGSEGGGIKIWPWE-AIEKALSLKPEERHTAALIVERSYIDLRSHLS 302
VLS+ IS+YGD+WSGSEGG +K+WPW+ A+ K+LSLK EERH AAL VERSYID R+ +S
Sbjct: 230 VLSIAISAYGDIWSGSEGGALKVWPWDGALGKSLSLKMEERHMAALAVERSYIDPRNMVS 289
Query: 303 VNGFSSILTSDIKNLLSDHSRAKVWSAGFLSFALWDARTRELLKVFNIDGQIENRVDMSL 362
NGF++ LTSD+ L+SDH+RA+VWSA L+FA+WDARTR+L+KVFNIDGQ+ENR + S+
Sbjct: 290 ANGFANTLTSDVTFLVSDHTRARVWSASPLTFAIWDARTRDLIKVFNIDGQLENRPENSV 349
Query: 363 LPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRT 422
PDF E+E K K VT+SKK+KAQSS GFFQRSRNAIMGAADAVRR A KGGF DD+R+T
Sbjct: 350 YPDFGSEEEGKMK-VTASKKEKAQSSLGFFQRSRNAIMGAADAVRRAATKGGFCDDSRKT 408
Query: 423 EALTTSIDGMIWTGGANGLLLQWDPNGNRLQDFQYLPFAVQCLCTFGSQIWVGYMNGIVQ 482
EA+ S+DGMIWTG +NG+L++WD NGN LQ+F Y + C+ TF S++WVGY NG VQ
Sbjct: 409 EAIVISVDGMIWTGSSNGILMRWDGNGNCLQEFAYESSGILCMFTFCSRLWVGYSNGTVQ 468
Query: 483 VLDLEGNLLGGWVAHSSPVIKMAVGAGYIFTLANHGGIRGWNVTSPGPLDSILCKELAGK 542
V DLEG LLGGWVAHS PVIKMA+GAGY+FTLANHGGIRGWNVTSPGPLD++L ELAGK
Sbjct: 469 VWDLEGKLLGGWVAHSGPVIKMAIGAGYLFTLANHGGIRGWNVTSPGPLDNVLRAELAGK 528
Query: 543 EFLYTRMENLKILAGTWNVGQGRASQDALISWLGSAASDVGIVVVGLQEVEMGAGFLAMS 602
EFLY+R+ENLKILAGTWNVG+GRAS D+L+SWLG AA+ V IVVVGLQEVEMGAG LAMS
Sbjct: 529 EFLYSRIENLKILAGTWNVGEGRASTDSLVSWLGCAATGVEIVVVGLQEVEMGAGVLAMS 588
Query: 603 AAKETVGLEGSAVGHWWLDMIGKILDDGSTFERVGSRQLAGLLIAVWVRKNLKDYVGDVD 662
AAKETVGLEGS +G WWLDMIGK LD+GS+F RVGSRQLAGLLI VWVR +LK +VGDVD
Sbjct: 589 AAKETVGLEGSPLGQWWLDMIGKTLDEGSSFVRVGSRQLAGLLICVWVRHDLKPHVGDVD 648
Query: 663 VAAVPCGFGRAIGNKGAVGLRVRVYDRIMCFVNCHFAAHLEAVNRRNADFDHVYRTMTFC 722
AAVPCGFGRAIGNKGAVG+R+R+YDR++CFVNCHFAAHLEAVNRRNADFDHVYRTMTF
Sbjct: 649 AAAVPCGFGRAIGNKGAVGVRLRMYDRVLCFVNCHFAAHLEAVNRRNADFDHVYRTMTFS 708
Query: 723 RPSNLCXXXXXXXXXVVQMLRSTNPLSGLTVEGVPELSEADMVIFLGDFNYRLDGITYDE 782
R S+ V M R N L T+E PELSEADMVIFLGDFNYRLD ITYDE
Sbjct: 709 RQSSSLNAGVAGASFGVTMPRGGNALGVNTIEARPELSEADMVIFLGDFNYRLDDITYDE 768
Query: 783 ARDFISQRCFDWLRERDQLRAEMEAGNVFQGMREADIKFPPTYKFEKHLAGLA 835
RDFISQRCFDWLRE+DQL EMEAGNVFQGMREA I+FPPTYKFE+H AGLA
Sbjct: 769 TRDFISQRCFDWLREKDQLHTEMEAGNVFQGMREAIIRFPPTYKFERHQAGLA 821
|
|
| TAIR|locus:2031933 5PTASE13 "inositol-polyphosphate 5-phosphatase 13" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2159 (765.1 bits), Expect = 2.8e-255, Sum P(2) = 2.8e-255
Identities = 406/644 (63%), Positives = 499/644 (77%)
Query: 90 LPEYIGKGGDIPMFKPPVRAALHPARPPSLEVKPHPLRETQIGCFLRTIVCTEEQLWAGG 149
LPE+IG GG +FK PVRAA+HP RPP LE++PHPLRETQ G FLR I CTE QLWAG
Sbjct: 109 LPEFIGAGGGSGIFKVPVRAAVHPGRPPCLELRPHPLRETQTGRFLRNIACTETQLWAGQ 168
Query: 150 ENGLRVWNLKELYXXXXXXXXXXXXXXXXXXTAPFKESVKGVSSVMCMVGDEASGVVWSG 209
ENG+R WNL++ Y TAPF ESV S MC+V D+++ ++WSG
Sbjct: 169 ENGIRFWNLEDAYEAGCGIGGQVPRGDED--TAPFHESVT-TSPTMCLVADQSNKLLWSG 225
Query: 210 HRDGRIMCWKMNARLL--DSDDG--FGEVLSWQAHRGPVLSLCISSYGDLWSGSEGGGIK 265
H+DG+I WKM+ + D DD F E +SW AHRGPV S+ ISSYGD+WS SEGG IK
Sbjct: 226 HKDGKIRAWKMDQSSVSHDDDDSDPFKERVSWLAHRGPVNSIVISSYGDMWSCSEGGVIK 285
Query: 266 IWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAK 325
IWPW+ +EK+L LKPEE+H AAL+VERS IDLRS ++VNG SI +S++K LL+D RAK
Sbjct: 286 IWPWDTLEKSLLLKPEEKHMAALLVERSAIDLRSQVTVNGTCSISSSEVKFLLADSVRAK 345
Query: 326 VWSAGFLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKA 385
VW+ LSF++WDAR+++LLKV N+DGQ+ENR D+ + D ++DE K K ++SK++K
Sbjct: 346 VWAVQSLSFSIWDARSKDLLKVLNVDGQVENRGDLPPIQDQQVDDEMKLKFFSASKREKP 405
Query: 386 QSSFGFFQRSRNAIMGAADAVRRVAAK--GGFGDDNRRTEALTTSIDGMIWTGGANGLLL 443
Q GF QRSRNAIMGAA AVRRVA + G F +D R+TEA+ ++DG IWTG +GL++
Sbjct: 406 Q---GFLQRSRNAIMGAAGAVRRVATRSAGAFSEDTRKTEAIVLAVDGTIWTGSISGLIV 462
Query: 444 QWDPNGNRLQDFQYLPFAVQCLCTFGSQIWVGYMNGIVQVLDLEGNLLGGWVAHSSPVIK 503
QWD NGNRL+D + V C CTFG +I+VGY +G +QVLDL+G L+ WV+H+ PVIK
Sbjct: 463 QWDGNGNRLRDVNHHHRPVLCFCTFGDRIYVGYASGYIQVLDLDGKLISSWVSHNEPVIK 522
Query: 504 MAVGAGYIFTLANHGGIRGWNVTSPGPLDSILCKELAGKEFLYTRMENLKILAGTWNVGQ 563
+A G G+IF+LA HGG+RGW VTSPGPLD+I+ EL+ KE LY R +N++IL GTWNVGQ
Sbjct: 523 LAAGGGFIFSLATHGGVRGWYVTSPGPLDNIIRTELSQKETLYARQDNVRILIGTWNVGQ 582
Query: 564 GRASQDALISWLGSAASDVGIVVVGLQEVEMGAGFLAMSAAKETVGLEGSAVGHWWLDMI 623
GRAS DAL+SWLGS SDVGIV VGLQEVEMGAGFLAMSAAKETVGLEGSAVG WW+D I
Sbjct: 583 GRASHDALMSWLGSVTSDVGIVAVGLQEVEMGAGFLAMSAAKETVGLEGSAVGQWWIDAI 642
Query: 624 GKILDDGSTFERVGSRQLAGLLIAVWVRKNLKDYVGDVDVAAVPCGFGRAIGNKGAVGLR 683
GK LD+ +TFER+GSRQLAGLLI++W RK+++ +VGD+DVAAVPCGFGRAIGNKG VGLR
Sbjct: 643 GKALDEKNTFERMGSRQLAGLLISLWARKDIRTHVGDLDVAAVPCGFGRAIGNKGGVGLR 702
Query: 684 VRVYDRIMCFVNCHFAAHLEAVNRRNADFDHVYRTMTFCRPSNL 727
+RVYDRIMCFVNCH AAHLEAVNRRNADF+H++R M F R NL
Sbjct: 703 IRVYDRIMCFVNCHLAAHLEAVNRRNADFNHIFRLMVFSRGQNL 746
|
|
| UNIPROTKB|F1NLK6 INPP5B "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 242 (90.2 bits), Expect = 1.5e-27, Sum P(2) = 1.5e-27
Identities = 55/195 (28%), Positives = 100/195 (51%)
Query: 529 GPLDSILCKELAGKEFLYTRMENLKILAGTWNVGQGRASQDALISWLGSAASDVGIVVVG 588
G D+I+ +L +E YT ++N + GT+NV G++ +++L WL ++ I VG
Sbjct: 33 GLRDTIVKSQLVQREDSYTYIQNFRFFVGTYNVN-GQSPKESLQPWLRCDSAPPDIYCVG 91
Query: 589 LQEVEMGAGFLAMSAAKETVGLEGSAVGHWWLDMIGKILDDGSTFERVGSRQLAGLLIAV 648
QE+++ +KE + W + L + + +V +L G+++ +
Sbjct: 92 FQELDL---------SKEAFFFNDTPKEEEWFKAVTDSLHPDAKYAKVKLVRLVGIMLLL 142
Query: 649 WVRKNLKDYVGDVDVAAVPCGFGRAIGNKGAVGLRVRVYDRIMCFVNCHFAAHLEAVNRR 708
+V+ +L + +V++ V G +GNKG V +R + ++ +C VN H AAH+E RR
Sbjct: 143 YVKADLALNISEVEIETVGTGIMGRMGNKGGVAIRFKFHNTSVCVVNSHLAAHMEEYERR 202
Query: 709 NADFDHVYRTMTFCR 723
N DF + M FC+
Sbjct: 203 NQDFKDICSRMQFCQ 217
|
|
| UNIPROTKB|E1BB73 E1BB73 "Uncharacterized protein" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 237 (88.5 bits), Expect = 4.0e-26, Sum P(3) = 4.0e-26
Identities = 54/195 (27%), Positives = 95/195 (48%)
Query: 529 GPLDSILCKELAGKEFLYTRMENLKILAGTWNVGQGRASQDALISWLGSAASDVGIVVVG 588
G D+I+ L KE YT ++N + GT+NV G++ ++ L WL + VG
Sbjct: 325 GLRDTIVKSHLIQKEEDYTYIQNFRFFVGTYNVN-GQSPKECLRPWLSHDTQAPDVYCVG 383
Query: 589 LQEVEMGAGFLAMSAAKETVGLEGSAVGHWWLDMIGKILDDGSTFERVGSRQLAGLLIAV 648
QE+++ +KE + W + + L + + +V +L G+++ +
Sbjct: 384 FQELDL---------SKEAFFFHDTPKEEEWFKAVSEALHPDAKYAKVKLIRLVGIMLLL 434
Query: 649 WVRKNLKDYVGDVDVAAVPCGFGRAIGNKGAVGLRVRVYDRIMCFVNCHFAAHLEAVNRR 708
+V++ Y+ +V+ V G +GNKG V +R + ++ +C VN H AAH E RR
Sbjct: 435 YVKQEHAAYISEVEAETVGTGIMGRMGNKGGVAIRFQFHNTSICVVNSHLAAHTEEYERR 494
Query: 709 NADFDHVYRTMTFCR 723
N D+ + M FC+
Sbjct: 495 NQDYKDICSRMQFCQ 509
|
|
| DICTYBASE|DDB_G0292392 Dd5P3 "inositol 5-phosphatase" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
|---|
Score = 230 (86.0 bits), Expect = 4.1e-26, Sum P(2) = 4.1e-26
Identities = 69/230 (30%), Positives = 108/230 (46%)
Query: 501 VIKMAVGAGYIFTLANHGGIRGWNVTSPGPLDSILCKELAGKEFLYTRMENLKILAGTWN 560
V+ + +G + N G N + D + K++ + Y++ E + GT+N
Sbjct: 540 VLDLLLGLHKSMVVNNSNNGNGGNGGNGSGHDDNIRKQVQDRVKEYSKKEWRNVFVGTYN 599
Query: 561 VGQGRASQDALISWL---GSAASDVGIVVVGLQEV-EMGAGFLAMSAAKETVGLEGSAVG 616
VG +S L+ WL G+ V+GLQEV E+ AG + + S++G
Sbjct: 600 VGGVHSSYFDLVQWLRPDGANCPTPDFYVLGLQEVVELTAGQILAT---------DSSIG 650
Query: 617 HWWLDMIGKILDDGST---FERVGSRQLAGLLIAVWVRKNLKDYVGDVDVAAVPCGFGRA 673
W D I + L S + ++ S QL GLL+A++VR++ Y +V + V CG
Sbjct: 651 KQWEDAIERALPKVSPNVKYIKLQSSQLVGLLMAIYVREDAIHYFREVQIQNVKCGMNGL 710
Query: 674 IGNKGAVGLRVRVYDRIMCFVNCHFAAHLEAVNRRNADFDHVYRTMTFCR 723
GNKG +G+R+ D FV HFAA V R +DF + T+ F R
Sbjct: 711 AGNKGGIGVRLLFSDTSFTFVTAHFAAGQSNVEDRISDFREIDSTLAFGR 760
|
|
| MGI|MGI:103257 Inpp5b "inositol polyphosphate-5-phosphatase B" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 234 (87.4 bits), Expect = 3.7e-25, Sum P(2) = 3.7e-25
Identities = 54/193 (27%), Positives = 96/193 (49%)
Query: 529 GPLDSILCKELAGKEFLYTRMENLKILAGTWNVGQGRASQDALISWLGSAASDVGIVVVG 588
G D+I+ L KE YT ++N + GT+NV G++ ++ L WL +A + VG
Sbjct: 322 GLRDTIVRSHLVQKEENYTYIQNFRFFVGTYNVN-GQSPKECLRPWLSHSALAPDVYCVG 380
Query: 589 LQEVEMGAGFLAMSAAKETVGLEGSAVGHWWLDMIGKILDDGSTFERVGSRQLAGLLIAV 648
QE+++ +KE + W + + L + + +V +L G+++ +
Sbjct: 381 FQELDL---------SKEAFFFHDTPKEEEWFKAVSESLHPDAKYAKVKFVRLVGIMLLL 431
Query: 649 WVRKNLKDYVGDVDVAAVPCGFGRAIGNKGAVGLRVRVYDRIMCFVNCHFAAHLEAVNRR 708
+V++ Y+ +V+ V G +GNKG V +R ++++ +C VN H AAH E RR
Sbjct: 432 YVKQEHAAYISEVEAETVGTGIMGRMGNKGGVAIRFQLHNTSICVVNSHLAAHTEEYERR 491
Query: 709 NADFDHVYRTMTF 721
N D+ + M F
Sbjct: 492 NQDYRDICSRMQF 504
|
|
| TAIR|locus:2141095 IP5PII "AT4G18010" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 172 (65.6 bits), Expect = 1.4e-24, Sum P(3) = 1.4e-24
Identities = 38/91 (41%), Positives = 54/91 (59%)
Query: 738 VVQMLRSTNPLSGLTVEGVPELSEADMVIFLGDFNYRLDGITYDEARDFISQRCFDWLRE 797
V +++R T S L + + D V + GD NYRL+ ++ E R +SQ+ +D L+
Sbjct: 470 VYEIIRRTRFASVLDTDQPRTIPCHDQVFWFGDLNYRLN-MSDGEVRKLVSQKRWDELKN 528
Query: 798 RDQLRAEMEAGNVFQGMREADIKFPPTYKFE 828
DQL E+ G+VF G RE IKFPPTYK+E
Sbjct: 529 SDQLIRELRRGHVFDGWREGPIKFPPTYKYE 559
|
|
| ZFIN|ZDB-GENE-061110-61 ocrl "oculocerebrorenal syndrome of Lowe" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 252 (93.8 bits), Expect = 2.9e-24, Sum P(3) = 2.9e-24
Identities = 57/194 (29%), Positives = 99/194 (51%)
Query: 529 GPLDSILCKELAGKEFLYTRMENLKILAGTWNVGQGRASQDALISWLGSAASDVGIVVVG 588
G + +L L+ KE Y ++N K GTWNV G++ +L WL S + +G
Sbjct: 278 GSREGLLKYRLSKKEKEYVDIKNFKFFVGTWNVN-GQSPDSSLGPWLSSDPDPPDVYALG 336
Query: 589 LQEVEMGA-GFLAMSAAKETVGLEGSAVGHWWLDMIGKILDDGSTFERVGSRQLAGLLIA 647
QE+++ F M ++KE + W+D + + L + + +V +L G+++
Sbjct: 337 FQELDLSTEAFFYMDSSKEQL----------WVDAVERGLHQKARYIQVRIIRLVGMMLV 386
Query: 648 VWVRKNLKDYVGDVDVAAVPCGFGRAIGNKGAVGLRVRVYDRIMCFVNCHFAAHLEAVNR 707
V+++K KD + ++ +V G +GNKG V +R ++ CFVN H AAH++ R
Sbjct: 387 VYIKKEHKDQIREIASESVGTGLMNKMGNKGGVAVRFVFHNTSFCFVNSHLAAHVDDFER 446
Query: 708 RNADFDHVYRTMTF 721
RN D+ + M+F
Sbjct: 447 RNQDYKDICARMSF 460
|
|
| DICTYBASE|DDB_G0284187 Dd5P2 "inositol 5-phosphatase" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
|---|
Score = 247 (92.0 bits), Expect = 1.2e-23, Sum P(3) = 1.2e-23
Identities = 62/177 (35%), Positives = 95/177 (53%)
Query: 550 ENLKILAGTWNVGQGRASQDALISWLGSAASDVGIVVVGLQE-VEMGAGFLAMSAAKETV 608
++L I GTWN R L +W+ + + I+V+GLQE V M AG + + A +
Sbjct: 443 KHLSIFVGTWNCNAKRTQN--LANWILTNSFAPDIIVLGLQEIVNMKAGAIVKATAADKQ 500
Query: 609 GLEGSAVGHWWLDMIGKI-LDDGSTFERVGSRQLAGLLIAVWVRKNLKDYVGDVDVAAVP 667
+ +A W D+ + L G + +V ++ L GL+I V+V++ Y+ +V A VP
Sbjct: 501 NNKENAYHPWKHDIEQTLSLSSGGRYVKVMNKVLVGLMILVYVKEEHAPYISEVSGAVVP 560
Query: 668 CGFGRAIGNKGAVGLRVRVYDRIMCFVNCHFAA---HLEAVNRRNADFDHVYRTMTF 721
CG IGNKG +G+R +Y +CFVN H AA H E + RR D+ + + MTF
Sbjct: 561 CGMMGKIGNKGGLGVRFTLYKTGICFVNSHLAAGPSH-EKMERRTQDYKKI-QMMTF 615
|
|
| TAIR|locus:2077314 AT3G63240 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 171 (65.3 bits), Expect = 1.5e-22, Sum P(3) = 1.5e-22
Identities = 41/98 (41%), Positives = 60/98 (61%)
Query: 738 VVQMLRSTN-P-LSGLTVEGVPEL-SEADMVIFLGDFNYRLDGITYDEARDFISQRCFDW 794
V+++LR T P ++ + P++ SE D VI+LGD NYR+ ++Y A+ + R DW
Sbjct: 359 VLEILRKTRFPRVNNAGDDKSPQMISEHDRVIWLGDLNYRI-ALSYRSAKALVEMR--DW 415
Query: 795 --LRERDQLRAEMEAGNVFQGMREADIKFPPTYKFEKH 830
L E+DQLR E G VF+G +E I FPPTYK+ +
Sbjct: 416 RALLEKDQLRIEQRKGCVFEGWKEGTIYFPPTYKYSNN 453
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q84W55 | IP5P4_ARATH | 3, ., 1, ., 3, ., 3, 6 | 0.6859 | 0.9358 | 0.7157 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 3.1.3 | 0.963 |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 842 | |||
| cd09074 | 299 | cd09074, INPP5c, Catalytic domain of inositol poly | 8e-79 | |
| smart00128 | 306 | smart00128, IPPc, Inositol polyphosphate phosphata | 9e-64 | |
| cd09093 | 292 | cd09093, INPP5c_INPP5B, Catalytic inositol polypho | 1e-54 | |
| cd09090 | 291 | cd09090, INPP5c_ScInp51p-like, Catalytic inositol | 3e-46 | |
| cd09094 | 300 | cd09094, INPP5c_INPP5J-like, Catalytic inositol po | 2e-39 | |
| cd09089 | 328 | cd09089, INPP5c_Synj, Catalytic inositol polyphosp | 4e-35 | |
| COG5411 | 460 | COG5411, COG5411, Phosphatidylinositol 5-phosphate | 2e-33 | |
| cd09098 | 336 | cd09098, INPP5c_Synj1, Catalytic inositol polyphos | 2e-28 | |
| cd09099 | 336 | cd09099, INPP5c_Synj2, Catalytic inositol polyphos | 5e-26 | |
| PLN03191 | 621 | PLN03191, PLN03191, Type I inositol-1,4,5-trisphos | 2e-25 | |
| cd09101 | 304 | cd09101, INPP5c_SHIP2-INPPL1, Catalytic inositol p | 2e-20 | |
| cd09095 | 298 | cd09095, INPP5c_INPP5E-like, Catalytic inositol po | 2e-16 | |
| cd09091 | 307 | cd09091, INPP5c_SHIP, Catalytic inositol polyphosp | 3e-16 | |
| cd09100 | 307 | cd09100, INPP5c_SHIP1-INPP5D, Catalytic inositol p | 1e-13 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 0.003 |
| >gnl|CDD|197308 cd09074, INPP5c, Catalytic domain of inositol polyphosphate 5-phosphatases | Back alignment and domain information |
|---|
Score = 256 bits (656), Expect = 8e-79
Identities = 96/281 (34%), Positives = 133/281 (47%), Gaps = 40/281 (14%)
Query: 552 LKILAGTWNVGQGRASQDALISWLGSA-ASDVGIVVVGLQEVEMGAGFLAMSAAKETVGL 610
+KI TWNVG G + + L +WL I VG+QEV+M VG
Sbjct: 1 VKIFVVTWNVGGGISPPENLENWLSPKGTEAPDIYAVGVQEVDMSVQGF--------VGN 52
Query: 611 EGSAVGHWWLDMIGKILDDGSTFERVGSRQLAGLLIAVWVRKNLKDYVGDVDVAAVPCGF 670
+ SA W+D I + L++ + +GS QL G+ + V+V+K + D++V V G
Sbjct: 53 DDSAKAREWVDNIQEALNEKENYVLLGSAQLVGIFLFVFVKKEHLPQIKDLEVEGVTVGT 112
Query: 671 GRA--IGNKGAVGLRVRVYDRIMCFVNCHFAAHLEAVNRRNADFDHVYRTMTFCRPSNLC 728
G +GNKG V +R ++ D CFVN H AA E V RRN D+ + + F R
Sbjct: 113 GGGGKLGNKGGVAIRFQINDTSFCFVNSHLAAGQEEVERRNQDYRDILSKLKFYRGDPAI 172
Query: 729 SAAAAGASSVVQMLRSTNPLSGLTVEGVPELSEADMVIFLGDFNYRLDGITYDEARDFIS 788
+ + D+V + GD NYR+D T DE R IS
Sbjct: 173 D----------------------------SIFDHDVVFWFGDLNYRIDS-TDDEVRKLIS 203
Query: 789 QRCFDWLRERDQLRAEMEAGNVFQGMREADIKFPPTYKFEK 829
Q D L E+DQL+ + E G VF G +E I FPPTYKF+
Sbjct: 204 QGDLDDLLEKDQLKKQKEKGKVFDGFQELPITFPPTYKFDP 244
|
Inositol polyphosphate 5-phosphatases (5-phosphatases) are signal-modifying enzymes, which hydrolyze the 5-phosphate from the inositol ring of specific 5-position phosphorylated phosphoinositides (PIs) and inositol phosphates (IPs), such as PI(4,5)P2, PI(3,4,5)P3, PI(3,5)P2, I(1,4,5)P3, and I(1,3,4,5)P4. These enzymes are Mg2+-dependent, and belong to the large EEP (exonuclease/endonuclease/phosphatase) superfamily that contains functionally diverse enzymes that share a common catalytic mechanism of cleaving phosphodiester bonds. In addition to this INPP5c domain, 5-phosphatases often contain additional domains and motifs, such as the SH2 domain, the Sac-1 domain, the proline-rich domain (PRD), CAAX, RhoGAP (RhoGTPase-activating protein), and SKICH [SKIP (skeletal muscle- and kidney-enriched inositol phosphatase) carboxyl homology] domains, that are important for protein-protein interactions and/or for the subcellular localization of these enzymes. 5-phosphatases incorporate into large signaling complexes, and regulate diverse cellular processes including postsynaptic vesicular trafficking, insulin signaling, cell growth and survival, and endocytosis. Loss or gain of function of 5-phosphatases is implicated in certain human diseases. This family also contains a functionally unrelated nitric oxide transport protein, Cimex lectularius (bedbug) nitrophorin, which catalyzes a heme-assisted S-nitrosation of a proximal thiolate; the heme however binds at a site distinct from the active site of the 5-phosphatases. Length = 299 |
| >gnl|CDD|214525 smart00128, IPPc, Inositol polyphosphate phosphatase, catalytic domain homologues | Back alignment and domain information |
|---|
Score = 216 bits (551), Expect = 9e-64
Identities = 95/286 (33%), Positives = 135/286 (47%), Gaps = 49/286 (17%)
Query: 551 NLKILAGTWNVGQGRASQDALISWLGSAASDVG-----IVVVGLQEVEMGAGFLAMSAAK 605
++K+L GTWNVG + + + SWL I V+GLQEV A
Sbjct: 2 DIKVLIGTWNVGGLESPKVDVTSWLFQKIEVKQSEKPDIYVIGLQEVVGLAPG------- 54
Query: 606 ETVGLEGSAVGH-WWLDMIGKILDDGSTFERVGSRQLAGLLIAVWVRKNLKDYVGDVDVA 664
V LE A W D++ L+ + + L G+L+ V+V+ N Y+ DV+
Sbjct: 55 --VILETIAGKERLWSDLLESSLNGDGQYNVLAKVYLVGILVLVFVKANHLVYIKDVETF 112
Query: 665 AVPCGFGRAIGNKGAVGLRVRVYDRIMCFVNCHFAAHLEAVNRRNADFDHVYRTMTFCRP 724
V G G GNKGAV +R ++ D CFVN H AA V +RN D+ + R ++F
Sbjct: 113 TVKTGMGGLWGNKGAVAVRFKLSDTSFCFVNSHLAAGASNVEQRNQDYKTILRALSF--- 169
Query: 725 SNLCSAAAAGASSVVQMLRSTNPLSGLTVEGVPELSE--ADMVIFLGDFNYRLDGITYDE 782
LS+ D+V + GD N+RLD +Y+E
Sbjct: 170 -----------------------------PERALLSQFDHDVVFWFGDLNFRLDSPSYEE 200
Query: 783 ARDFISQRCFDWLRERDQLRAEMEAGNVFQGMREADIKFPPTYKFE 828
R IS++ FD L E+DQL + EAG VF+G +E I FPPTYK++
Sbjct: 201 VRRKISKKEFDDLLEKDQLNRQREAGKVFKGFQEGPITFPPTYKYD 246
|
Mg(2+)-dependent/Li(+)-sensitive enzymes. Length = 306 |
| >gnl|CDD|197327 cd09093, INPP5c_INPP5B, Catalytic inositol polyphosphate 5-phosphatase (INPP5c) domain of Type II inositol polyphosphate 5-phosphatase I, Oculocerebrorenal syndrome of Lowe 1, and related proteins | Back alignment and domain information |
|---|
Score = 190 bits (485), Expect = 1e-54
Identities = 83/278 (29%), Positives = 133/278 (47%), Gaps = 42/278 (15%)
Query: 552 LKILAGTWNV-GQGRASQDALISWLGSAASDVGIVVVGLQEVEMGA-GFLAMSAAKETVG 609
+I GTWNV GQ +L WL I +G QE+++ A FL +++E
Sbjct: 1 FRIFVGTWNVNGQSPDE--SLRPWLSCDEEPPDIYAIGFQELDLSAEAFLFNDSSREQE- 57
Query: 610 LEGSAVGHWWLDMIGKILDDGSTFERVGSRQLAGLLIAVWVRKNLKDYVGDVDVAAVPCG 669
W+ + + L + +++V +L G+++ V+V+K + ++ +V V G
Sbjct: 58 ---------WVKAVERGLHPDAKYKKVKLIRLVGMMLLVFVKKEHRQHIKEVAAETVGTG 108
Query: 670 FGRAIGNKGAVGLRVRVYDRIMCFVNCHFAAHLEAVNRRNADFDHVYRTMTFCRPSNLCS 729
+GNKG V +R + ++ CFVN H AAH+E V RRN D+ + M F P
Sbjct: 109 IMGKMGNKGGVAVRFQFHNTTFCFVNSHLAAHMEEVERRNQDYKDICARMKFEDPDG--- 165
Query: 730 AAAAGASSVVQMLRSTNPLSGLTVEGVPELSEADMVIFLGDFNYRLDGITYDEARDFISQ 789
PLS +S+ D+V +LGD NYR+ + +E ++ I +
Sbjct: 166 ----------------PPLS---------ISDHDVVFWLGDLNYRIQELPTEEVKELIEK 200
Query: 790 RCFDWLRERDQLRAEMEAGNVFQGMREADIKFPPTYKF 827
+ L + DQL + AG VF+G E +I F PTYK+
Sbjct: 201 NDLEELLKYDQLNIQRRAGKVFEGFTEGEINFIPTYKY 238
|
This subfamily contains the INPP5c domain of type II inositol polyphosphate 5-phosphatase I (INPP5B), Oculocerebrorenal syndrome of Lowe 1 (OCRL-1), and related proteins. It belongs to a family of Mg2+-dependent inositol polyphosphate 5-phosphatases, which hydrolyze the 5-phosphate from the inositol ring of various 5-position phosphorylated phosphoinositides (PIs) and inositol phosphates (IPs), and to the large EEP (exonuclease/endonuclease/phosphatase) superfamily that contains functionally diverse enzymes that share a common catalytic mechanism of cleaving phosphodiester bonds. INPP5B and OCRL1 preferentially hydrolyze the 5-phosphate of phosphatidylinositol (4,5)- bisphosphate [PI(4,5)P2] and phosphatidylinositol (3,4,5)- trisphosphate [PI(3,4,5)P3]. INPP5B can also hydrolyze soluble inositol (1,4,5)-trisphosphate [I(1,4,5)P3] and inositol (1,3,4,5)-tetrakisphosphate [I(1,3,4,5)P4]. INPP5B participates in the endocytic pathway and in the early secretory pathway. In the latter, it may function in retrograde ERGIC (ER-to-Golgi intermediate compartment)-to-ER transport; it binds specific RAB proteins within the secretory pathway. In the endocytic pathway, it binds RAB5 and during endocytosis, may function in a RAB5-controlled cascade for converting PI(3,4,5)P3 to phosphatidylinositol 3-phosphate (PI3P). This cascade may link growth factor signaling and membrane dynamics. Mutation in OCRL1 is implicated in Lowe syndrome, an X-linked recessive multisystem disorder, which includes defects in eye, brain, and kidney function, and in Type 2 Dent's disease, a disorder with only the renal symptoms. OCRL-1 may have a role in membrane trafficking within the endocytic pathway and at the trans-Golgi network, and may participate in actin dynamics or signaling from endomembranes. OCRL1 and INPP5B have overlapping functions: deletion of both 5-phosphatases in mice is embryonic lethal, deletion of OCRL1 alone has no phenotype, and deletion of Inpp5b alone has only a mild phenotype (male sterility). Several of the proteins that interact with OCRL1 also bind INPP5B, for examples, inositol polyphosphate phosphatase interacting protein of 27kDa (IPIP27)A and B (also known as Ses1 and 2), and endocytic signaling adaptor APPL1. OCRL1, but not INPP5B, binds clathrin heavy chain, the plasma membrane AP2 adaptor subunit alpha-adaptin. In addition to this INPP5c domain, most proteins in this subfamily have a C-terminal RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain. Length = 292 |
| >gnl|CDD|197324 cd09090, INPP5c_ScInp51p-like, Catalytic inositol polyphosphate 5-phosphatase (INPP5c) domain of Saccharomyces cerevisiae Inp51p, Inp52p, and Inp53p, and related proteins | Back alignment and domain information |
|---|
Score = 167 bits (424), Expect = 3e-46
Identities = 95/285 (33%), Positives = 131/285 (45%), Gaps = 52/285 (18%)
Query: 552 LKILAGTWNVGQGRASQDALISWL----GSAASDVGIVVVGLQE-VEMGAGFLAMSAAKE 606
+ I GT+NV G++ +D L SWL D IVV+GLQE VE+ AG + S
Sbjct: 1 INIFVGTFNVN-GKSYKDDLSSWLFPEENDELPD--IVVIGLQEVVELTAGQILNSD--- 54
Query: 607 TVGLEGSAVGHWWLDMIGKILD--DGSTFERVGSRQLAGLLIAVWVRKNLKDYVGDVDVA 664
+ +W I L+ G + + S QL G + +V+++ V +V+ +
Sbjct: 55 ------PSKSSFWEKKIKTTLNGRGGEKYVLLRSEQLVGTALLFFVKESQLPKVKNVEGS 108
Query: 665 AVPCGFGRAIGNKGAVGLRVRVYDRIMCFVNCHFAAHLEAVNRRNADFDHVYRTMTFCRP 724
G G GNKGAV +R D CFV H AA L RN D+ + R + F R
Sbjct: 109 TKKTGLGGMSGNKGAVAIRFDYGDTSFCFVTSHLAAGLTNYEERNNDYKTIARGLRFSR- 167
Query: 725 SNLCSAAAAGASSVVQMLRSTNPLSGLTVEGVPELSEADMVIFLGDFNYRLDGITYDEAR 784
G T++ + D VI+LGDFNYR+ +T ++ R
Sbjct: 168 -------------------------GRTIK------DHDHVIWLGDFNYRIS-LTNEDVR 195
Query: 785 DFISQRCFDWLRERDQLRAEMEAGNVFQGMREADIKFPPTYKFEK 829
FI D L E DQL +M AG VF G E I FPPTYK++K
Sbjct: 196 RFILNGKLDKLLEYDQLNQQMNAGEVFPGFSEGPITFPPTYKYDK 240
|
This subfamily contains the INPP5c domain of three Saccharomyces cerevisiae synaptojanin-like inositol polyphosphate 5-phosphatases (INP51, INP52, and INP53), Schizosaccharomyces pombe synaptojanin (SPsynaptojanin), and related proteins. It belongs to a family of Mg2+-dependent inositol polyphosphate 5-phosphatases, which hydrolyze the 5-phosphate from the inositol ring of various 5-position phosphorylated phosphoinositides (PIs) and inositol phosphates (IPs), and to the large EEP (exonuclease/endonuclease/phosphatase) superfamily that contains functionally diverse enzymes that share a common catalytic mechanism of cleaving phosphodiester bonds. In addition to this INPP5c domain, these proteins have an N-terminal catalytic Sac1-like domain (found in other proteins including the phophoinositide phosphatase Sac1p), and a C-terminal proline-rich domain (PRD). The Sac1 domain allows Inp52p and Inp53p to recognize and dephosphorylate a wider range of substrates including PI3P, PI4P, and PI(3,5)P2. The Sac1 domain of Inp51p is non-functional. Disruption of any two of INP51, INP52, and INP53, in S. cerevisiae leads to abnormal vacuolar and plasma membrane morphology. During hyperosmotic stress, Inp52p and Inp53p localize at actin patches, where they may facilitate the hydrolysis of PI(4,5)P2, and consequently promote actin rearrangement to regulate cell growth. SPsynaptojanin is also active against a range of soluble and lipid inositol phosphates, including I(1,4,5)P3, I(1,3,4,5)P4, I(1,4,5,6)P4, PI(4,5)P2, and PIP3. Transformation of S. cerevisiae with a plasmid expressing the SPsynaptojanin 5-phosphatase domain rescues inp51/inp52/inp53 triple-mutant strains. Length = 291 |
| >gnl|CDD|197328 cd09094, INPP5c_INPP5J-like, Catalytic inositol polyphosphate 5-phosphatase (INPP5c) domain of inositol polyphosphate 5-phosphatase J and related proteins | Back alignment and domain information |
|---|
Score = 147 bits (374), Expect = 2e-39
Identities = 76/283 (26%), Positives = 117/283 (41%), Gaps = 48/283 (16%)
Query: 552 LKILAGTWNVGQGRASQDALISWLG--SAASDVGIVVVGLQEVEMGAGFLAMSAAKETVG 609
L++ TWNV + S LG S I ++GLQEV +
Sbjct: 1 LRVYVVTWNVAT-APPPIDVRSLLGLQSPEVAPDIYIIGLQEVNSKPVQFVSDLIFDDP- 58
Query: 610 LEGSAVGHWWLDMIGKILDDGSTFE--RVGSRQLAGLLIAVWVRKNLKDYVGDVDVAAVP 667
W D+ IL S +V S +L GLL+ V+V+ ++ DV
Sbjct: 59 ---------WSDLFMDIL---SPKGYVKVSSIRLQGLLLLVFVKIQHLPFIRDVQTNYTR 106
Query: 668 CGFGRAIGNKGAVGLRVRVYDRIMCFVNCHFAAHLEAVNRRNADFDHVYRTMTFCRPSNL 727
G G GNKGAV +R +Y ++CF+NCH AH+E +R DF+ + T F
Sbjct: 107 TGLGGYWGNKGAVTVRFSLYGHMICFLNCHLPAHMEKWEQRIDDFETILSTQVF------ 160
Query: 728 CSAAAAGASSVVQMLRSTNPLSGLTVEGVPELSEADMVIFLGDFNYRLDGITYDEARDFI 787
P + + D V + GD N+R++ ++ + R+ +
Sbjct: 161 ------------------------NECNTPSILDHDYVFWFGDLNFRIEDVSIEFVRELV 196
Query: 788 SQRCFDWLRERDQLRAEMEAGNVFQGMREADIKFPPTYKFEKH 830
+ + + L E+DQL FQG +E + F PTYKF+
Sbjct: 197 NSKKYHLLLEKDQLNMAKRKEEAFQGFQEGPLNFAPTYKFDLG 239
|
INPP5c domain of Inositol polyphosphate-5-phosphatase J (INPP5J), also known as PIB5PA or PIPP, and related proteins. This subfamily belongs to a family of Mg2+-dependent inositol polyphosphate 5-phosphatases, which hydrolyze the 5-phosphate from the inositol ring of various 5-position phosphorylated phosphoinositides (PIs) and inositol phosphates (IPs), and to the large EEP (exonuclease/endonuclease/phosphatase) superfamily that contains functionally diverse enzymes that share a common catalytic mechanism of cleaving phosphodiester bonds. INPP5J hydrolyzes PI(4,5)P2, I(1,4,5)P3, and I(1,3,4,5)P4 at ruffling membranes. These proteins contain a C-terminal, SKIP carboxyl homology domain (SKICH), which may direct plasma membrane ruffle localization. Length = 300 |
| >gnl|CDD|197323 cd09089, INPP5c_Synj, Catalytic inositol polyphosphate 5-phosphatase (INPP5c) domain of synaptojanins | Back alignment and domain information |
|---|
Score = 136 bits (344), Expect = 4e-35
Identities = 84/298 (28%), Positives = 127/298 (42%), Gaps = 63/298 (21%)
Query: 552 LKILAGTWNVGQGR------------------ASQDALISWLGSAASD--VGIVVVGLQE 591
L++ GTWNV G+ + A S + V I +G +E
Sbjct: 1 LRVFVGTWNVNGGKHFRSIAFKHQSMTDWLLDNPKLAGQCSNDSEEDEKPVDIFAIGFEE 60
Query: 592 -VEMGAGFLAMSAAKETVGLEGSAVGHWWLDMIGKILDDGSTFERVGSRQLAGLLIAVWV 650
V++ A + ++ + W + + K + + + S QL G+ + V+V
Sbjct: 61 MVDLNASNIVSAS---------TTNQKEWGEELQKTISRDHKYVLLTSEQLVGVCLFVFV 111
Query: 651 RKNLKDYVGDVDVAAVPCGFGRAIGNKGAVGLRVRVYDRIMCFVNCHFAAHLEAVNRRNA 710
R ++ DV V V G G A GNKGAV +R ++ +CFV HFAA V RN
Sbjct: 112 RPQHAPFIRDVAVDTVKTGLGGAAGNKGAVAIRFLLHSTSLCFVCSHFAAGQSQVKERNE 171
Query: 711 DFDHVYRTMTFCRPSNLCSAAAAGASSVVQMLRSTNPLSGLTVEGVPELSEADMVIFLGD 770
DF + R ++F M R+ L D V + GD
Sbjct: 172 DFAEIARKLSF------------------PMGRT--------------LDSHDYVFWCGD 199
Query: 771 FNYRLDGITYDEARDFISQRCFDWLRERDQLRAEMEAGNVFQGMREADIKFPPTYKFE 828
FNYR+D + DE ++ + + L E DQL + AGNVF+G E +I F PTYK++
Sbjct: 200 FNYRID-LPNDEVKELVRNGDWLKLLEFDQLTKQKAAGNVFKGFLEGEINFAPTYKYD 256
|
This subfamily contains the INPP5c domains of two human synaptojanins, synaptojanin 1 (Synj1) and synaptojanin 2 (Synj2), and related proteins. It belongs to a family of Mg2+-dependent inositol polyphosphate 5-phosphatases, which hydrolyze the 5-phosphate from the inositol ring of various 5-position phosphorylated phosphoinositides (PIs) and inositol phosphates (IPs). They belong to the large EEP (exonuclease/endonuclease/phosphatase) superfamily that contains functionally diverse enzymes that share a common catalytic mechanism of cleaving phosphodiester bonds. Synj1 occurs as two main isoforms: a brain enriched 145 KDa protein (Synj1-145) and a ubiquitously expressed 170KDa protein (Synj1-170). Synj1-145 participates in clathrin-mediated endocytosis. The primary substrate of the Synj1-145 INPP5c domain is PI(4,5)P2, which it converts to PI4P. Synj1-145 may work with membrane curvature sensors/generators (such as endophilin) to remove PI(4,5)P2 from curved membranes. The recruitment of the INPP5c domain of Synj1-145 to endophilin-induced membranes leads to a fragmentation and condensation of these structures. The PI(4,5)P2 to PI4P conversion may cooperate with dynamin to produce membrane fission. In addition to this INPP5c domain, Synjs contain an N-terminal Sac1-like domain; the Sac1 domain can dephosphorylate a variety of phosphoinositides in vitro. Synj2 can hydrolyze phosphatidylinositol diphosphate (PIP2) to phosphatidylinositol phosphate (PIP). Synj2 occurs as multiple alternative splice variants in various tissues. These variants share the INPP5c domain and the Sac1 domain. Synj2A is recruited to the mitochondria via its interaction with OMP25 (a mitochondrial outer membrane protein). Synj2B is found at nerve terminals in the brain and at the spermatid manchette in testis. Synj2B undergoes further alternative splicing to give 2B1 and 2B2. In clathrin-mediated endocytosis, Synj2 participates in the formation of clathrin-coated pits, and perhaps also in vesicle decoating. Rac1 GTPase regulates the intracellular localization of Synj2 forms, but not Synj1. Synj2 may contribute to the role of Rac1 in cell migration and invasion, and is a potential target for therapeutic intervention in malignant tumors. Length = 328 |
| >gnl|CDD|227698 COG5411, COG5411, Phosphatidylinositol 5-phosphate phosphatase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Score = 134 bits (338), Expect = 2e-33
Identities = 84/308 (27%), Positives = 120/308 (38%), Gaps = 49/308 (15%)
Query: 528 PGPLDSILCKELAGKEFLYTRMENLKILAGTWNVGQGRASQDALISWL---GSAASDVGI 584
P + L + Y +++ I T+N G+ + + WL A +
Sbjct: 6 YDPRHPYIVAVLRQRRSKYVIEKDVSIFVSTFNP-PGKPPKASTKRWLFPEIEATELADL 64
Query: 585 VVVGLQEVEMGAGFLAMSAAKETVGLEGSAVGHWWLDMIGKILDDGSTFERV---GSRQL 641
VVGLQEV + ++ + + W + L+ + E+ S QL
Sbjct: 65 YVVGLQEV------VELTPGSI-LSADPYDRLRIWESKVLDCLNGAQSDEKYSLLRSPQL 117
Query: 642 AGLLIAVWVRKNLKDYVGDVDVAAVPCGFGRAIGNKGAVGLRVRVYDRIMCFVNCHFAAH 701
G+L+ V+ V V GFG + NKGAV +R CFVN H AA
Sbjct: 118 GGILLRVFSLATNLPVVKPVSGTVKKTGFGGSSSNKGAVAIRFNYERTSFCFVNSHLAAG 177
Query: 702 LEAVNRRNADFDHVYRTMTFCRPSNLCSAAAAGASSVVQMLRSTNPLSGLTVEGVPELSE 761
+ + R D+ + + F R GL +
Sbjct: 178 VNNIEERIFDYRSIASNICFSR--------------------------GLRIYDH----- 206
Query: 762 ADMVIFLGDFNYRLDGITYDEARDFISQ--RCFDWLRERDQLRAEMEAGNVFQGMREADI 819
D + +LGD NYR+ T +E R I+ D L E DQL EME GNVF G +E I
Sbjct: 207 -DTIFWLGDLNYRVTS-TNEEVRPEIASDDGRLDKLFEYDQLLWEMEVGNVFPGFKEPVI 264
Query: 820 KFPPTYKF 827
FPPTYKF
Sbjct: 265 TFPPTYKF 272
|
Length = 460 |
| >gnl|CDD|197332 cd09098, INPP5c_Synj1, Catalytic inositol polyphosphate 5-phosphatase (INPP5c) domain of synaptojanin 1 | Back alignment and domain information |
|---|
Score = 117 bits (293), Expect = 2e-28
Identities = 88/297 (29%), Positives = 129/297 (43%), Gaps = 62/297 (20%)
Query: 552 LKILAGTWNVGQGRA------SQDALISWLGSAASDVG-------------IVVVGLQE- 591
+++ GTWNV G+ L WL A G I +G +E
Sbjct: 1 IRVCVGTWNVNGGKQFRSIAFKNQTLTDWLLDAPKKAGIPEFQDVRSKPVDIFAIGFEEM 60
Query: 592 VEMGAGFLAMSAAKETVGLEGSAVGHWWLDMIGKILDDGSTFERVGSRQLAGLLIAVWVR 651
VE+ AG + +SA+ L W + K + + + S QL G+ + V++R
Sbjct: 61 VELNAGNI-VSASTTNQKL--------WAAELQKTISRDQKYVLLASEQLVGVCLFVFIR 111
Query: 652 KNLKDYVGDVDVAAVPCGFGRAIGNKGAVGLRVRVYDRIMCFVNCHFAAHLEAVNRRNAD 711
++ DV V V G G A GNKGAV +R+ + +CFV HFAA V RN D
Sbjct: 112 PQHAPFIRDVAVDTVKTGMGGATGNKGAVAIRMLFHTTSLCFVCSHFAAGQSQVKERNED 171
Query: 712 FDHVYRTMTFCRPSNLCSAAAAGASSVVQMLRSTNPLSGLTVEGVPELSEADMVIFLGDF 771
F + R ++F P+ + L D V + GDF
Sbjct: 172 FIEIARKLSF-------------------------PMGRM-------LFSHDYVFWCGDF 199
Query: 772 NYRLDGITYDEARDFISQRCFDWLRERDQLRAEMEAGNVFQGMREADIKFPPTYKFE 828
NYR+D I +E ++ I Q+ +D L DQL + AG VF+G E + F PTYK++
Sbjct: 200 NYRID-IPNEEVKELIRQQNWDSLIAGDQLINQKNAGQVFRGFLEGKLDFAPTYKYD 255
|
This subfamily contains the INPP5c domains of human synaptojanin 1 (Synj1) and related proteins. It belongs to a family of Mg2+-dependent inositol polyphosphate 5-phosphatases, which hydrolyze the 5-phosphate from the inositol ring of various 5-position phosphorylated phosphoinositides (PIs) and inositol phosphates (IPs), and to the large EEP (exonuclease/endonuclease/phosphatase) superfamily that contains functionally diverse enzymes that share a common catalytic mechanism of cleaving phosphodiester bonds. Synj1 occurs as two main isoforms: a brain enriched 145 KDa protein (Synj1-145) and a ubiquitously expressed 170KDa protein (Synj1-170). Synj1-145 participates in clathrin-mediated endocytosis. The primary substrate of the Synj1-145 INPP5c domain is PI(4,5)P2, which it converts to PI4P. Synj1-145 may work with membrane curvature sensors/generators (such as endophilin) to remove PI(4,5)P2 from curved membranes. The recruitment of the INPP5c domain of Synj1-145 to endophilin-induced membranes leads to a fragmentation and condensation of these structures. The PI(4,5)P2 to PI4P conversion may cooperate with dynamin to produce membrane fission. In addition to this INPP5c domain, these proteins contain an N-terminal Sac1-like domain; the Sac1 domain can dephosphorylate a variety of phosphoinositides in vitro. Length = 336 |
| >gnl|CDD|197333 cd09099, INPP5c_Synj2, Catalytic inositol polyphosphate 5-phosphatase (INPP5c) domain of synaptojanin 2 | Back alignment and domain information |
|---|
Score = 109 bits (274), Expect = 5e-26
Identities = 77/297 (25%), Positives = 124/297 (41%), Gaps = 62/297 (20%)
Query: 552 LKILAGTWNVGQGRASQDALIS------WLGSAASDVG-------------IVVVGLQE- 591
++ GTWNV G+ + ++ WL + G I VG +E
Sbjct: 1 TRVAMGTWNVNGGKQFRSNILGTSELTDWLLDSPKLSGTPDFQDDESNPPDIFAVGFEEM 60
Query: 592 VEMGAGFLAMSAAKETVGLEGSAVGHWWLDMIGKILDDGSTFERVGSRQLAGLLIAVWVR 651
VE+ AG + ++ W + + K + + + S QL G+ + ++VR
Sbjct: 61 VELSAGNIVNASTTNR---------KMWGEQLQKAISRSHRYILLTSAQLVGVCLFIFVR 111
Query: 652 KNLKDYVGDVDVAAVPCGFGRAIGNKGAVGLRVRVYDRIMCFVNCHFAAHLEAVNRRNAD 711
++ DV + V G G GNKGAV +R + Y CF+ H A V RN D
Sbjct: 112 PYHVPFIRDVAIDTVKTGMGGKAGNKGAVAIRFQFYSTSFCFICSHLTAGQNQVKERNED 171
Query: 712 FDHVYRTMTFCRPSNLCSAAAAGASSVVQMLRSTNPLSGLTVEGVPELSEADMVIFLGDF 771
+ + + ++F N+ S D V + GDF
Sbjct: 172 YKEITQKLSFPMGRNVFS--------------------------------HDYVFWCGDF 199
Query: 772 NYRLDGITYDEARDFISQRCFDWLRERDQLRAEMEAGNVFQGMREADIKFPPTYKFE 828
NYR+D +TY+E FI ++ + L E DQL+ + +G +F+ E I F PTYK++
Sbjct: 200 NYRID-LTYEEVFYFIKRQDWKKLLEFDQLQLQKSSGKIFKDFHEGTINFGPTYKYD 255
|
This subfamily contains the INPP5c domains of human synaptojanin 2 (Synj2) and related proteins. It belongs to a family of Mg2+-dependent inositol polyphosphate 5-phosphatases, which hydrolyze the 5-phosphate from the inositol ring of various 5-position phosphorylated phosphoinositides (PIs) and inositol phosphates (IPs), and to the large EEP (exonuclease/endonuclease/phosphatase) superfamily that contains functionally diverse enzymes that share a common catalytic mechanism of cleaving phosphodiester bonds. Synj2 can hydrolyze phosphatidylinositol diphosphate (PIP2) to phosphatidylinositol phosphate (PIP). In addition to this INPP5c domain, these proteins contain an N-terminal Sac1-like domain; the Sac1 domain can dephosphorylate a variety of phosphoinositides in vitro. Synj2 occurs as multiple alternative splice variants in various tissues. These variants share the INPP5c domain and the Sac1 domain. Synj2A is recruited to the mitochondria via its interaction with OMP25, a mitochondrial outer membrane protein. Synj2B is found at nerve terminals in the brain and at the spermatid manchette in testis. Synj2B undergoes further alternative splicing to give 2B1 and 2B2. In clathrin-mediated endocytosis, Synj2 participates in the formation of clathrin-coated pits, and perhaps also in vesicle decoating. Rac1 GTPase regulates the intracellular localization of Synj2 forms, but not Synj1. Synj2 may contribute to the role of Rac1 in cell migration and invasion, and is a potential target for therapeutic intervention in malignant tumors. Length = 336 |
| >gnl|CDD|215624 PLN03191, PLN03191, Type I inositol-1,4,5-trisphosphate 5-phosphatase 2; Provisional | Back alignment and domain information |
|---|
Score = 111 bits (280), Expect = 2e-25
Identities = 63/196 (32%), Positives = 102/196 (52%), Gaps = 29/196 (14%)
Query: 635 RVGSRQLAGLLIAVWVRKNLKDYVGDVDVAAVPCGFGRAIGNKGAVGLRVRVYDRIMCFV 694
R+ S+Q+ G+ ++VWVRK L+ ++ ++ V+ V G +GNKG+V + + ++ +CFV
Sbjct: 366 RIVSKQMVGIYVSVWVRKRLRRHINNLKVSPVGVGLMGYMGNKGSVSISMSLFQSRLCFV 425
Query: 695 NCHFAAHLE--AVNRRNADFDHVYRTMTFCRPSNLCSAAAAGASSVVQMLRSTNPLSGLT 752
H + + A RRNAD V +++R T S L
Sbjct: 426 CSHLTSGHKDGAEQRRNAD--------------------------VYEIIRRTRFSSVLD 459
Query: 753 VEGVPELSEADMVIFLGDFNYRLDGITYDEARDFISQRCFDWLRERDQLRAEMEAGNVFQ 812
+ + D + + GD NYRL+ + E R ++Q+ +D L DQL E+ +G+VF
Sbjct: 460 TDQPQTIPSHDQIFWFGDLNYRLN-MLDTEVRKLVAQKRWDELINSDQLIKELRSGHVFD 518
Query: 813 GMREADIKFPPTYKFE 828
G +E IKFPPTYK+E
Sbjct: 519 GWKEGPIKFPPTYKYE 534
|
Length = 621 |
| >gnl|CDD|197335 cd09101, INPP5c_SHIP2-INPPL1, Catalytic inositol polyphosphate 5-phosphatase (INPP5c) domain of SH2 domain containing inositol 5-phosphatase-2 and related proteins | Back alignment and domain information |
|---|
Score = 92.3 bits (229), Expect = 2e-20
Identities = 76/291 (26%), Positives = 121/291 (41%), Gaps = 62/291 (21%)
Query: 552 LKILAGTWNVGQGRASQDALISW-----LGSAASDVG------IVVVGLQEVEMGAGFLA 600
+ I GTWN+G + L SW LG + I V G QE +G
Sbjct: 1 ISIFIGTWNMGSVPPPKS-LASWLTSRGLGKTLDETTVTIPHDIYVFGTQENSVGD---- 55
Query: 601 MSAAKETVGLEGSAVGHWWLDMIGKILDDGSTFER--VGSRQLAGLLIAVWVRKNLKDYV 658
+E W+D + L + + + + + L + + V V+ ++ +
Sbjct: 56 ----RE------------WVDFLRASLKELTDIDYQPIALQCLWNIKMVVLVKPEHENRI 99
Query: 659 GDVDVAAVPCGFGRAIGNKGAVGLRVRVYDRIMCFVNCHFAAHLEAVNRRNADFDHVYRT 718
V ++V G +GNKGAVG+ FVNCH + E +RRN ++ + R+
Sbjct: 100 SHVHTSSVKTGIANTLGNKGAVGVSFMFNGTSFGFVNCHLTSGNEKTHRRNQNYLDILRS 159
Query: 719 MTFCRPSNLCSAAAAGASSVVQMLRSTNPLSGLTVEGVPELSEADMVIFLGDFNYRLDGI 778
+ S ++ LR T+ + + GD NYRLD +
Sbjct: 160 L---------SLGDKQLNAFDISLRFTH------------------LFWFGDLNYRLD-M 191
Query: 779 TYDEARDFISQRCFDWLRERDQLRAEMEAGNVFQGMREADIKFPPTYKFEK 829
E ++I+++ FD L DQL E E VF RE +I FPPTY++E+
Sbjct: 192 DIQEILNYITRKEFDPLLAVDQLNLEREKNKVFLRFREEEISFPPTYRYER 242
|
This subfamily contains the INPP5c domain of SHIP2 (SH2 domain containing inositol 5-phosphatase-2, also called INPPL1) and related proteins. It belongs to a family of Mg2+-dependent inositol polyphosphate 5-phosphatases, which hydrolyze the 5-phosphate from the inositol ring of various 5-position phosphorylated phosphoinositides (PIs) and inositol phosphates (IPs), and to the large EEP (exonuclease/endonuclease/phosphatase) superfamily that contains functionally diverse enzymes that share a common catalytic mechanism of cleaving phosphodiester bonds. SHIP2 catalyzes the dephosphorylation of the PI, phosphatidylinositol 3,4,5-trisphosphate [PI(3,4,5)P3], to phosphatidylinositol 3,4-bisphosphate [PI(3,4)P2]. SHIP2 is widely expressed, most prominently in brain, heart and in skeletal muscle. SHIP2 is an inhibitor of the insulin signaling pathway. It is implicated in actin structure remodeling, cell adhesion and cell spreading, receptor endocytosis and degradation, and in the JIP1-mediated JNK pathway. Its interacting partners include filamin/actin, p130Cas, Shc, Vinexin, Interesectin 1, and c-Jun NH2-terminal kinase (JNK)-interacting protein 1 (JIP1). A large variety of extracellular stimuli appear to lead to the tyrosine phosphorylation of SHIP2, including epidermal growth factor (EGF), platelet-derived growth factor (PDGF), insulin, macrophage colony-stimulating factor (M-CSF) and hepatocyte growth factor (HGF). SHIP2 is localized to the cytosol in quiescent cells; following growth factor stimulation and /or cell adhesion, it relocalizes to membrane ruffles. In addition to this INPP5c domain, SHIP2 has an N-terminal SH2 domain, a C-terminal proline-rich domain (PRD), which includes a WW-domain binding motif (PPLP), an NPXY motif and a sterile alpha motif (SAM) domain. The gene encoding SHIP2 is a candidate for conferring a predisposition for type 2 diabetes; it has been suggested that suppression of SHIP2 may be of benefit in the treatment of obesity and thereby prevent type 2 diabetes. SHIP2 and SHIP1 have little overlap in their in vivo functions. Length = 304 |
| >gnl|CDD|197329 cd09095, INPP5c_INPP5E-like, Catalytic inositol polyphosphate 5-phosphatase (INPP5c) domain of Inositol polyphosphate-5-phosphatase E and related proteins | Back alignment and domain information |
|---|
Score = 80.5 bits (199), Expect = 2e-16
Identities = 50/188 (26%), Positives = 82/188 (43%), Gaps = 25/188 (13%)
Query: 644 LLIAVWVRKNLKDYVGDVDVAAVPCGFGRAIGNKGAVGLRVRVYDRIMCFVNCHFAAHLE 703
L +AV++R++L + +V+ A V I KGA+ + + F+ HF +
Sbjct: 77 LHLAVFIRRDLIWFCSEVESATVTTRIVSQIKTKGALAISFTFFGTSFLFITSHFTSGDG 136
Query: 704 AVNRRNADFDHVYRTMTFCRPSNLCSAAAAGASSVVQMLRSTNPLSGLTVEGVPELSEAD 763
V R D++ + + + P N+ + + S + + D
Sbjct: 137 KVKERVLDYNKIIQALNL--PRNVPT------NPYKS--ESGDVTTRF-----------D 175
Query: 764 MVIFLGDFNYRLDGITYDEARDFISQRCFDWLRE---RDQLRAEMEAGNVFQGMREADIK 820
V + GDFN+RL G I+Q + DQL EM G++F+G +EA I
Sbjct: 176 EVFWFGDFNFRLSG-PRHLVDALINQGQEVDVSALLQHDQLTREMSKGSIFKGFQEAPIH 234
Query: 821 FPPTYKFE 828
FPPTYKF+
Sbjct: 235 FPPTYKFD 242
|
INPP5c domain of Inositol polyphosphate-5-phosphatase E (also called type IV or 72 kDa 5-phosphatase), rat pharbin, and related proteins. This subfamily belongs to a family of Mg2+-dependent inositol polyphosphate 5-phosphatases, which hydrolyze the 5-phosphate from the inositol ring of various 5-position phosphorylated phosphoinositides (PIs) and inositol phosphates (IPs), and to the large EEP (exonuclease/endonuclease/phosphatase) superfamily that contains functionally diverse enzymes that share a common catalytic mechanism of cleaving phosphodiester bonds. INPP5E hydrolyzes the 5-phosphate from PI(3,5)P2, PI(4,5)P2 and PI(3,4,5)P3, forming PI3P, PI4P, and PI(3,4)P2, respectively. It is a very potent PI(3,4,5)P3 5-phosphatase. Its intracellular localization is chiefly cytosolic, with pronounced perinuclear/Golgi localization. INPP5E also has an N-terminal proline rich domain (PRD) and a C-terminal CAAX motif. This protein is expressed in a variety of tissues, including the breast, brain, testis, and haemopoietic cells. It is differentially expressed in several cancers, for example, it is up-regulated in cervical cancer and down-regulated in stomach cancer. It is a candidate target for therapeutics of obesity and related disorders, as it is expressed in the hypothalamus, and following insulin stimulation, it undergoes tyrosine phosphorylation, associates with insulin receptor substrate-1, -2, and PI3-kinase, and become active as a 5-phosphatase. INPP5E may play a role, along with other 5-phosphatases SHIP2 and SKIP, in regulating glucose homoeostasis and energy metabolism. Mice deficient in INPPE5 develop a multi-organ disorder associated with structural defects of the primary cilium. Length = 298 |
| >gnl|CDD|197325 cd09091, INPP5c_SHIP, Catalytic inositol polyphosphate 5-phosphatase (INPP5c) domain of SH2 domain containing inositol polyphosphate 5-phosphatase-1 and -2, and related proteins | Back alignment and domain information |
|---|
Score = 80.0 bits (197), Expect = 3e-16
Identities = 78/294 (26%), Positives = 119/294 (40%), Gaps = 65/294 (22%)
Query: 552 LKILAGTWNVGQGRASQDALISW-----LGSAASDVG------IVVVGLQEVEMGAGFLA 600
+ I GTWN+G ++ + SW G DV I V+G QE +G
Sbjct: 1 ISIFIGTWNMGSAPPPKN-ITSWFTSKGQGKTRDDVADYIPHDIYVIGTQEDPLGE---- 55
Query: 601 MSAAKETVGLEGSAVGHWWLDMIGKILDDGS--TFERVGSRQLAGLLIAVWVRKNLKDYV 658
KE WLD++ L + + ++ + + L + I V + ++ +
Sbjct: 56 ----KE------------WLDLLRHSLKELTSLDYKPIAMQTLWNIRIVVLAKPEHENRI 99
Query: 659 GDVDVAAVPCGFGRAIGNKGAVGLRVRVYDRIMCFVNCHFAAHLEAVNRRNADFDHVYRT 718
V ++V G +GNKGAVG+ FVN H + E RRN ++ ++ R
Sbjct: 100 SHVCTSSVKTGIANTLGNKGAVGVSFMFNGTSFGFVNSHLTSGSEKKLRRNQNYLNILR- 158
Query: 719 MTFCRPSNLCSAAAAGASSVVQMLRSTNPLSGLTVEGVPELSEADMVIFLGDFNYRLDGI 778
S S+ R T+ + +LGD NYRLD +
Sbjct: 159 --------FLSLGDKKLSAFNITHRFTH------------------LFWLGDLNYRLD-L 191
Query: 779 TYDEARDFIS---QRCFDWLRERDQLRAEMEAGNVFQGMREADIKFPPTYKFEK 829
EA + I Q+ F+ L DQL E E VF E +I FPPTY++E+
Sbjct: 192 PIQEAENIIQKIEQQQFEPLLRHDQLNLEREEHKVFLRFSEEEITFPPTYRYER 245
|
This subfamily contains the INPP5c domain of SHIP1 (SH2 domain containing inositol polyphosphate 5-phosphatase-1, also known as SHIP/INPP5D), and SHIP2 (also known as INPPL1). It belongs to a family of Mg2+-dependent inositol polyphosphate 5-phosphatases, which hydrolyze the 5-phosphate from the inositol ring of various 5-position phosphorylated phosphoinositides (PIs) and inositol phosphates (IPs), and to the large EEP (exonuclease/endonuclease/phosphatase) superfamily that contains functionally diverse enzymes that share a common catalytic mechanism of cleaving phosphodiester bonds. Both SHIP1 and -2 catalyze the dephosphorylation of the PI, phosphatidylinositol 3,4,5-trisphosphate [PI(3,4,5)P3], to phosphatidylinositol 3,4-bisphosphate [PI(3,4)P2]. SHIP1 also converts inositol-1,3,4,5- polyphosphate [I(1,3,4,5)P4] to inositol-1,3,4-polyphosphate [I(1,3,4)P3]. SHIP1 and SHIP2 have little overlap in their in vivo functions. SHIP1 is a negative regulator of cell growth and plays a major part in mediating the inhibitory signaling in B cells; it is predominantly expressed in hematopoietic cells. SHIP2 is as an inhibitor of the insulin signaling pathway, and is implicated in actin structure remodeling, cell adhesion and cell spreading, receptor endocytosis and degradation, and in the JIP1-mediated JNK pathway. SHIP2 is widely expressed, most prominently in brain, heart and in skeletal muscle. In addition to this INPP5c domain, SHIP1 has an N-terminal SH2 domain, two NPXY motifs, and a C-terminal proline-rich region (PRD), while SHIP2 has an N-terminal SH2 domain, a C-terminal proline-rich domain (PRD), which includes a WW-domain binding motif (PPLP), an NPXY motif, and a sterile alpha motif (SAM) domain. The gene encoding SHIP2 is a candidate gene for conferring a predisposition for type 2 diabetes. Length = 307 |
| >gnl|CDD|197334 cd09100, INPP5c_SHIP1-INPP5D, Catalytic inositol polyphosphate 5-phosphatase (INPP5c) domain of SH2 domain containing inositol polyphosphate 5-phosphatase-1 and related proteins | Back alignment and domain information |
|---|
Score = 72.3 bits (177), Expect = 1e-13
Identities = 72/300 (24%), Positives = 114/300 (38%), Gaps = 77/300 (25%)
Query: 552 LKILAGTWNVGQGRASQDALISWL-----GSAASDVG------IVVVGLQEVEMGAGFLA 600
+ I GTWN+G + + SW G D I V+G QE +G
Sbjct: 1 ITIFIGTWNMGNAPPPKK-ITSWFQCKGQGKTRDDTADYIPHDIYVIGTQEDPLGE---- 55
Query: 601 MSAAKETVGLEGSAVGHWWLDMIGKILDDGS--TFERVGSRQLAGLLIAVWVRKNLKDYV 658
KE WLD + L + + +F+ + + L + I V + ++ +
Sbjct: 56 ----KE------------WLDTLKHSLREITSISFKVIAIQTLWNIRIVVLAKPEHENRI 99
Query: 659 GDVDVAAVPCGFGRAIGNKGAVGLRVRVYDRIMCFVNCHFAAHLEAVNRRNADFDHVYRT 718
+ +V G +GNKGAVG+ FVN H + E RRN ++ ++ R
Sbjct: 100 SHICTDSVKTGIANTLGNKGAVGVSFMFNGTSFGFVNSHLTSGSEKKLRRNQNYFNILRF 159
Query: 719 MTFCRPSNLCSAAAAGASSVVQMLRSTNPLSGLTVEGVPELSEADM------VIFLGDFN 772
+ G +LS ++ + +LGD N
Sbjct: 160 LVL---------------------------------GDKKLSPFNITHRFTHLFWLGDLN 186
Query: 773 YRLDGITYDEARDFIS---QRCFDWLRERDQLRAEMEAGNVFQGMREADIKFPPTYKFEK 829
YR++ EA + I Q+ + L DQL E + VF E +I F PTY+FE+
Sbjct: 187 YRVELPNT-EAENIIQKIKQQQYQELLPHDQLLIERKESKVFLQFEEEEITFAPTYRFER 245
|
This subfamily contains the INPP5c domain of SHIP1 (SH2 domain containing inositol polyphosphate 5-phosphatase-1, also known as SHIP/INPP5D) and related proteins. It belongs to a family of Mg2+-dependent inositol polyphosphate 5-phosphatases, which hydrolyze the 5-phosphate from the inositol ring of various 5-position phosphorylated phosphoinositides (PIs) and inositol phosphates (IPs), and to the large EEP (exonuclease/endonuclease/phosphatase) superfamily that contains functionally diverse enzymes that share a common catalytic mechanism of cleaving phosphodiester bonds. SHIP1's enzymic activity is restricted to phosphatidylinositol 3,4,5-trisphosphate [PI (3,4,5)P3] and inositol-1,3,4,5- polyphosphate [I(1,3,4,5)P4]. It converts these two phosphoinositides to phosphatidylinositol 3,4-bisphosphate [PI (3,4)P2] and inositol-1,3,4-polyphosphate [I(1,3,4)P3], respectively. SHIP1 is a negative regulator of cell growth and plays a major part in mediating the inhibitory signaling in B cells; it is predominantly expressed in hematopoietic cells. In addition to this INPP5c domain, SHIP1 has an N-terminal SH2 domain, two NPXY motifs, and a C-terminal proline-rich region (PRD). SHIP1's phosphorylated NPXY motifs interact with proteins with phosphotyrosine binding (PTB) domains, and facilitate the translocation of SHIP1 to the plasma membrane to hydrolyze PI(3,4,5)P3. SHIP1 generally acts to oppose the activity of phosphatidylinositol 3-kinase (PI3K). It acts as a negative signaling molecule, reducing the levels of PI(3,4,5)P3, thereby removing the latter as a membrane-targeting signal for PH domain-containing effector molecules. SHIP1 may also, in certain contexts, amplify PI3K signals. SHIP1 and SHIP2 have little overlap in their in vivo functions. Length = 307 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 40.8 bits (94), Expect = 0.003
Identities = 50/246 (20%), Positives = 86/246 (34%), Gaps = 44/246 (17%)
Query: 147 AGGENGLRVWNLK-------ELYDESESDSVSVSK------SKGEDGTA----------P 183
+ +R+W+L L S+S S S S DGT
Sbjct: 217 GSSDGTIRLWDLSTGKLLRSTLSGHSDSVVSSFSPDGSLLASGSSDGTIRLWDLRSSSSL 276
Query: 184 FKESVKGVSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGP 243
+ SSV+ + ++ SG DG + W + L+ + H GP
Sbjct: 277 LRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDL------ETGKLLSSLTLKGHEGP 330
Query: 244 VLSLCISSYGD--LWSGSEGGGIKIWPWEAIE-----------KALSLKPEERHTAALIV 290
V SL S G + GS+ G I++W + ++S P+ R ++
Sbjct: 331 VSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEGHSNVLSVSFSPDGRVVSSGST 390
Query: 291 ERS-YIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVF 348
+ + + S S+ TS + +L + S + LWD +T F
Sbjct: 391 DGTVRLWDLSTGSLLRNLDGHTSRVTSLDFSPDGKSLASGSSDNTIRLWDLKTSLKSVSF 450
Query: 349 NIDGQI 354
+ DG++
Sbjct: 451 SPDGKV 456
|
Length = 466 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 842 | |||
| KOG0566 | 1080 | consensus Inositol-1,4,5-triphosphate 5-phosphatas | 100.0 | |
| PLN03191 | 621 | Type I inositol-1,4,5-trisphosphate 5-phosphatase | 100.0 | |
| smart00128 | 310 | IPPc Inositol polyphosphate phosphatase, catalytic | 100.0 | |
| COG5411 | 460 | Phosphatidylinositol 5-phosphate phosphatase [Sign | 100.0 | |
| KOG0271 | 480 | consensus Notchless-like WD40 repeat-containing pr | 100.0 | |
| KOG0271 | 480 | consensus Notchless-like WD40 repeat-containing pr | 100.0 | |
| KOG0272 | 459 | consensus U4/U6 small nuclear ribonucleoprotein Pr | 100.0 | |
| KOG0281 | 499 | consensus Beta-TrCP (transducin repeats containing | 100.0 | |
| KOG0295 | 406 | consensus WD40 repeat-containing protein [Function | 99.97 | |
| KOG0281 | 499 | consensus Beta-TrCP (transducin repeats containing | 99.97 | |
| KOG0286 | 343 | consensus G-protein beta subunit [General function | 99.97 | |
| KOG0263 | 707 | consensus Transcription initiation factor TFIID, s | 99.97 | |
| KOG0319 | 775 | consensus WD40-repeat-containing subunit of the 18 | 99.97 | |
| KOG0279 | 315 | consensus G protein beta subunit-like protein [Sig | 99.97 | |
| KOG0315 | 311 | consensus G-protein beta subunit-like protein (con | 99.96 | |
| KOG0272 | 459 | consensus U4/U6 small nuclear ribonucleoprotein Pr | 99.96 | |
| KOG0319 | 775 | consensus WD40-repeat-containing subunit of the 18 | 99.96 | |
| KOG0263 | 707 | consensus Transcription initiation factor TFIID, s | 99.95 | |
| KOG0279 | 315 | consensus G protein beta subunit-like protein [Sig | 99.95 | |
| KOG0285 | 460 | consensus Pleiotropic regulator 1 [RNA processing | 99.95 | |
| KOG0273 | 524 | consensus Beta-transducin family (WD-40 repeat) pr | 99.95 | |
| KOG0266 | 456 | consensus WD40 repeat-containing protein [General | 99.95 | |
| KOG0274 | 537 | consensus Cdc4 and related F-box and WD-40 protein | 99.95 | |
| KOG0313 | 423 | consensus Microtubule binding protein YTM1 (contai | 99.95 | |
| KOG0315 | 311 | consensus G-protein beta subunit-like protein (con | 99.94 | |
| KOG0318 | 603 | consensus WD40 repeat stress protein/actin interac | 99.94 | |
| KOG0266 | 456 | consensus WD40 repeat-containing protein [General | 99.94 | |
| KOG0313 | 423 | consensus Microtubule binding protein YTM1 (contai | 99.94 | |
| KOG0291 | 893 | consensus WD40-repeat-containing subunit of the 18 | 99.94 | |
| KOG0318 | 603 | consensus WD40 repeat stress protein/actin interac | 99.94 | |
| KOG0265 | 338 | consensus U5 snRNP-specific protein-like factor an | 99.94 | |
| KOG0274 | 537 | consensus Cdc4 and related F-box and WD-40 protein | 99.94 | |
| KOG0285 | 460 | consensus Pleiotropic regulator 1 [RNA processing | 99.93 | |
| KOG0306 | 888 | consensus WD40-repeat-containing subunit of the 18 | 99.93 | |
| PLN00181 | 793 | protein SPA1-RELATED; Provisional | 99.93 | |
| KOG0295 | 406 | consensus WD40 repeat-containing protein [Function | 99.93 | |
| KOG0284 | 464 | consensus Polyadenylation factor I complex, subuni | 99.93 | |
| cd00200 | 289 | WD40 WD40 domain, found in a number of eukaryotic | 99.93 | |
| KOG0292 | 1202 | consensus Vesicle coat complex COPI, alpha subunit | 99.92 | |
| KOG0291 | 893 | consensus WD40-repeat-containing subunit of the 18 | 99.92 | |
| KOG0286 | 343 | consensus G-protein beta subunit [General function | 99.92 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 99.92 | |
| KOG0645 | 312 | consensus WD40 repeat protein [General function pr | 99.92 | |
| KOG0306 | 888 | consensus WD40-repeat-containing subunit of the 18 | 99.92 | |
| KOG0293 | 519 | consensus WD40 repeat-containing protein [Function | 99.92 | |
| KOG0308 | 735 | consensus Conserved WD40 repeat-containing protein | 99.92 | |
| KOG0296 | 399 | consensus Angio-associated migratory cell protein | 99.91 | |
| PLN00181 | 793 | protein SPA1-RELATED; Provisional | 99.91 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 99.91 | |
| KOG0284 | 464 | consensus Polyadenylation factor I complex, subuni | 99.91 | |
| KOG0301 | 745 | consensus Phospholipase A2-activating protein (con | 99.91 | |
| KOG0282 | 503 | consensus mRNA splicing factor [Function unknown] | 99.9 | |
| KOG0565 | 145 | consensus Inositol polyphosphate 5-phosphatase and | 99.9 | |
| KOG0275 | 508 | consensus Conserved WD40 repeat-containing protein | 99.89 | |
| KOG0645 | 312 | consensus WD40 repeat protein [General function pr | 99.89 | |
| KOG0316 | 307 | consensus Conserved WD40 repeat-containing protein | 99.89 | |
| KOG0273 | 524 | consensus Beta-transducin family (WD-40 repeat) pr | 99.89 | |
| KOG0275 | 508 | consensus Conserved WD40 repeat-containing protein | 99.88 | |
| KOG0265 | 338 | consensus U5 snRNP-specific protein-like factor an | 99.88 | |
| PTZ00312 | 356 | inositol-1,4,5-triphosphate 5-phosphatase; Provisi | 99.87 | |
| cd00200 | 289 | WD40 WD40 domain, found in a number of eukaryotic | 99.87 | |
| KOG0288 | 459 | consensus WD40 repeat protein TipD [General functi | 99.87 | |
| KOG0283 | 712 | consensus WD40 repeat-containing protein [Function | 99.86 | |
| KOG0301 | 745 | consensus Phospholipase A2-activating protein (con | 99.86 | |
| PTZ00421 | 493 | coronin; Provisional | 99.86 | |
| KOG0640 | 430 | consensus mRNA cleavage stimulating factor complex | 99.86 | |
| KOG0292 | 1202 | consensus Vesicle coat complex COPI, alpha subunit | 99.86 | |
| PTZ00420 | 568 | coronin; Provisional | 99.86 | |
| PTZ00420 | 568 | coronin; Provisional | 99.86 | |
| KOG0300 | 481 | consensus WD40 repeat-containing protein [Function | 99.85 | |
| KOG0278 | 334 | consensus Serine/threonine kinase receptor-associa | 99.85 | |
| KOG0277 | 311 | consensus Peroxisomal targeting signal type 2 rece | 99.85 | |
| KOG0294 | 362 | consensus WD40 repeat-containing protein [Function | 99.85 | |
| KOG0308 | 735 | consensus Conserved WD40 repeat-containing protein | 99.85 | |
| PTZ00421 | 493 | coronin; Provisional | 99.84 | |
| KOG0296 | 399 | consensus Angio-associated migratory cell protein | 99.84 | |
| KOG0316 | 307 | consensus Conserved WD40 repeat-containing protein | 99.84 | |
| KOG0268 | 433 | consensus Sof1-like rRNA processing protein (conta | 99.84 | |
| KOG0305 | 484 | consensus Anaphase promoting complex, Cdc20, Cdh1, | 99.82 | |
| KOG0278 | 334 | consensus Serine/threonine kinase receptor-associa | 99.82 | |
| KOG1446 | 311 | consensus Histone H3 (Lys4) methyltransferase comp | 99.82 | |
| KOG0643 | 327 | consensus Translation initiation factor 3, subunit | 99.81 | |
| KOG0641 | 350 | consensus WD40 repeat protein [General function pr | 99.81 | |
| KOG0310 | 487 | consensus Conserved WD40 repeat-containing protein | 99.81 | |
| KOG0277 | 311 | consensus Peroxisomal targeting signal type 2 rece | 99.81 | |
| KOG0299 | 479 | consensus U3 snoRNP-associated protein (contains W | 99.81 | |
| KOG0973 | 942 | consensus Histone transcription regulator HIRA, WD | 99.8 | |
| KOG0641 | 350 | consensus WD40 repeat protein [General function pr | 99.8 | |
| KOG0299 | 479 | consensus U3 snoRNP-associated protein (contains W | 99.8 | |
| KOG1407 | 313 | consensus WD40 repeat protein [Function unknown] | 99.8 | |
| KOG0282 | 503 | consensus mRNA splicing factor [Function unknown] | 99.79 | |
| KOG0646 | 476 | consensus WD40 repeat protein [General function pr | 99.78 | |
| KOG0289 | 506 | consensus mRNA splicing factor [General function p | 99.78 | |
| KOG0293 | 519 | consensus WD40 repeat-containing protein [Function | 99.78 | |
| KOG0310 | 487 | consensus Conserved WD40 repeat-containing protein | 99.77 | |
| KOG1408 | 1080 | consensus WD40 repeat protein [Function unknown] | 99.77 | |
| KOG0647 | 347 | consensus mRNA export protein (contains WD40 repea | 99.76 | |
| KOG0288 | 459 | consensus WD40 repeat protein TipD [General functi | 99.76 | |
| KOG0321 | 720 | consensus WD40 repeat-containing protein L2DTL [Fu | 99.76 | |
| TIGR03866 | 300 | PQQ_ABC_repeats PQQ-dependent catabolism-associate | 99.76 | |
| KOG2445 | 361 | consensus Nuclear pore complex component (sc Seh1) | 99.73 | |
| KOG0973 | 942 | consensus Histone transcription regulator HIRA, WD | 99.73 | |
| KOG2048 | 691 | consensus WD40 repeat protein [General function pr | 99.73 | |
| KOG2096 | 420 | consensus WD40 repeat protein [General function pr | 99.73 | |
| KOG0640 | 430 | consensus mRNA cleavage stimulating factor complex | 99.73 | |
| KOG0647 | 347 | consensus mRNA export protein (contains WD40 repea | 99.72 | |
| KOG0300 | 481 | consensus WD40 repeat-containing protein [Function | 99.72 | |
| KOG0772 | 641 | consensus Uncharacterized conserved protein, conta | 99.72 | |
| KOG1539 | 910 | consensus WD repeat protein [General function pred | 99.72 | |
| KOG0305 | 484 | consensus Anaphase promoting complex, Cdc20, Cdh1, | 99.72 | |
| KOG1446 | 311 | consensus Histone H3 (Lys4) methyltransferase comp | 99.72 | |
| KOG0772 | 641 | consensus Uncharacterized conserved protein, conta | 99.71 | |
| KOG0639 | 705 | consensus Transducin-like enhancer of split protei | 99.71 | |
| KOG0267 | 825 | consensus Microtubule severing protein katanin p80 | 99.71 | |
| KOG0639 | 705 | consensus Transducin-like enhancer of split protei | 99.7 | |
| KOG1036 | 323 | consensus Mitotic spindle checkpoint protein BUB3, | 99.69 | |
| KOG2096 | 420 | consensus WD40 repeat protein [General function pr | 99.68 | |
| KOG0646 | 476 | consensus WD40 repeat protein [General function pr | 99.68 | |
| KOG0264 | 422 | consensus Nucleosome remodeling factor, subunit CA | 99.67 | |
| KOG0294 | 362 | consensus WD40 repeat-containing protein [Function | 99.67 | |
| KOG1332 | 299 | consensus Vesicle coat complex COPII, subunit SEC1 | 99.67 | |
| KOG2048 | 691 | consensus WD40 repeat protein [General function pr | 99.65 | |
| KOG1407 | 313 | consensus WD40 repeat protein [Function unknown] | 99.65 | |
| KOG0267 | 825 | consensus Microtubule severing protein katanin p80 | 99.65 | |
| KOG0269 | 839 | consensus WD40 repeat-containing protein [Function | 99.65 | |
| KOG0642 | 577 | consensus Cell-cycle nuclear protein, contains WD- | 99.65 | |
| KOG0283 | 712 | consensus WD40 repeat-containing protein [Function | 99.64 | |
| KOG1036 | 323 | consensus Mitotic spindle checkpoint protein BUB3, | 99.64 | |
| KOG1408 | 1080 | consensus WD40 repeat protein [Function unknown] | 99.64 | |
| KOG0302 | 440 | consensus Ribosome Assembly protein [General funct | 99.64 | |
| KOG0650 | 733 | consensus WD40 repeat nucleolar protein Bop1, invo | 99.63 | |
| KOG0643 | 327 | consensus Translation initiation factor 3, subunit | 99.63 | |
| KOG0270 | 463 | consensus WD40 repeat-containing protein [Function | 99.63 | |
| KOG0268 | 433 | consensus Sof1-like rRNA processing protein (conta | 99.61 | |
| KOG1063 | 764 | consensus RNA polymerase II elongator complex, sub | 99.6 | |
| KOG4283 | 397 | consensus Transcription-coupled repair protein CSA | 99.59 | |
| KOG1273 | 405 | consensus WD40 repeat protein [General function pr | 99.58 | |
| KOG4283 | 397 | consensus Transcription-coupled repair protein CSA | 99.57 | |
| KOG1274 | 933 | consensus WD40 repeat protein [General function pr | 99.57 | |
| TIGR03866 | 300 | PQQ_ABC_repeats PQQ-dependent catabolism-associate | 99.56 | |
| KOG0649 | 325 | consensus WD40 repeat protein [General function pr | 99.56 | |
| KOG0642 | 577 | consensus Cell-cycle nuclear protein, contains WD- | 99.56 | |
| KOG1539 | 910 | consensus WD repeat protein [General function pred | 99.55 | |
| KOG2106 | 626 | consensus Uncharacterized conserved protein, conta | 99.55 | |
| KOG0270 | 463 | consensus WD40 repeat-containing protein [Function | 99.54 | |
| KOG1332 | 299 | consensus Vesicle coat complex COPII, subunit SEC1 | 99.54 | |
| KOG0264 | 422 | consensus Nucleosome remodeling factor, subunit CA | 99.54 | |
| KOG1274 | 933 | consensus WD40 repeat protein [General function pr | 99.53 | |
| KOG0321 | 720 | consensus WD40 repeat-containing protein L2DTL [Fu | 99.48 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 99.48 | |
| KOG1007 | 370 | consensus WD repeat protein TSSC1, WD repeat super | 99.46 | |
| KOG1063 | 764 | consensus RNA polymerase II elongator complex, sub | 99.46 | |
| KOG1445 | 1012 | consensus Tumor-specific antigen (contains WD repe | 99.46 | |
| KOG2445 | 361 | consensus Nuclear pore complex component (sc Seh1) | 99.46 | |
| KOG0289 | 506 | consensus mRNA splicing factor [General function p | 99.45 | |
| KOG0649 | 325 | consensus WD40 repeat protein [General function pr | 99.44 | |
| KOG2919 | 406 | consensus Guanine nucleotide-binding protein [Gene | 99.43 | |
| KOG0307 | 1049 | consensus Vesicle coat complex COPII, subunit SEC3 | 99.43 | |
| KOG0269 | 839 | consensus WD40 repeat-containing protein [Function | 99.42 | |
| COG2319 | 466 | FOG: WD40 repeat [General function prediction only | 99.42 | |
| KOG0644 | 1113 | consensus Uncharacterized conserved protein, conta | 99.42 | |
| KOG0650 | 733 | consensus WD40 repeat nucleolar protein Bop1, invo | 99.41 | |
| KOG2106 | 626 | consensus Uncharacterized conserved protein, conta | 99.41 | |
| COG2319 | 466 | FOG: WD40 repeat [General function prediction only | 99.4 | |
| KOG4328 | 498 | consensus WD40 protein [Function unknown] | 99.39 | |
| KOG2919 | 406 | consensus Guanine nucleotide-binding protein [Gene | 99.39 | |
| KOG4378 | 673 | consensus Nuclear protein COP1 [Signal transductio | 99.37 | |
| KOG2055 | 514 | consensus WD40 repeat protein [General function pr | 99.37 | |
| KOG0302 | 440 | consensus Ribosome Assembly protein [General funct | 99.36 | |
| PRK11028 | 330 | 6-phosphogluconolactonase; Provisional | 99.34 | |
| KOG2055 | 514 | consensus WD40 repeat protein [General function pr | 99.34 | |
| KOG1034 | 385 | consensus Transcriptional repressor EED/ESC/FIE, r | 99.33 | |
| KOG0322 | 323 | consensus G-protein beta subunit-like protein GNB1 | 99.32 | |
| KOG0303 | 472 | consensus Actin-binding protein Coronin, contains | 99.31 | |
| KOG1034 | 385 | consensus Transcriptional repressor EED/ESC/FIE, r | 99.26 | |
| KOG1963 | 792 | consensus WD40 repeat protein [General function pr | 99.25 | |
| KOG1517 | 1387 | consensus Guanine nucleotide binding protein MIP1 | 99.25 | |
| KOG0303 | 472 | consensus Actin-binding protein Coronin, contains | 99.24 | |
| KOG4328 | 498 | consensus WD40 protein [Function unknown] | 99.24 | |
| KOG1188 | 376 | consensus WD40 repeat protein [General function pr | 99.23 | |
| KOG4378 | 673 | consensus Nuclear protein COP1 [Signal transductio | 99.23 | |
| KOG1007 | 370 | consensus WD repeat protein TSSC1, WD repeat super | 99.2 | |
| KOG0307 | 1049 | consensus Vesicle coat complex COPII, subunit SEC3 | 99.18 | |
| KOG0771 | 398 | consensus Prolactin regulatory element-binding pro | 99.17 | |
| KOG1587 | 555 | consensus Cytoplasmic dynein intermediate chain [C | 99.17 | |
| KOG0644 | 1113 | consensus Uncharacterized conserved protein, conta | 99.16 | |
| PRK01742 | 429 | tolB translocation protein TolB; Provisional | 99.13 | |
| KOG1240 | 1431 | consensus Protein kinase containing WD40 repeats [ | 99.12 | |
| KOG1009 | 434 | consensus Chromatin assembly complex 1 subunit B/C | 99.11 | |
| KOG1009 | 434 | consensus Chromatin assembly complex 1 subunit B/C | 99.11 | |
| KOG1334 | 559 | consensus WD40 repeat protein [General function pr | 99.1 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 99.09 | |
| KOG4227 | 609 | consensus WD40 repeat protein [General function pr | 99.07 | |
| PRK01742 | 429 | tolB translocation protein TolB; Provisional | 99.04 | |
| KOG0974 | 967 | consensus WD-repeat protein WDR6, WD repeat superf | 99.03 | |
| KOG1273 | 405 | consensus WD40 repeat protein [General function pr | 99.03 | |
| KOG0771 | 398 | consensus Prolactin regulatory element-binding pro | 99.02 | |
| KOG0290 | 364 | consensus Conserved WD40 repeat-containing protein | 99.01 | |
| PRK11028 | 330 | 6-phosphogluconolactonase; Provisional | 99.0 | |
| KOG1445 | 1012 | consensus Tumor-specific antigen (contains WD repe | 98.98 | |
| PRK03629 | 429 | tolB translocation protein TolB; Provisional | 98.96 | |
| KOG1524 | 737 | consensus WD40 repeat-containing protein CHE-2 [Ge | 98.93 | |
| KOG0322 | 323 | consensus G-protein beta subunit-like protein GNB1 | 98.89 | |
| KOG1240 | 1431 | consensus Protein kinase containing WD40 repeats [ | 98.88 | |
| PRK04922 | 433 | tolB translocation protein TolB; Provisional | 98.83 | |
| KOG1310 | 758 | consensus WD40 repeat protein [General function pr | 98.79 | |
| KOG1188 | 376 | consensus WD40 repeat protein [General function pr | 98.78 | |
| KOG0974 | 967 | consensus WD-repeat protein WDR6, WD repeat superf | 98.78 | |
| KOG4227 | 609 | consensus WD40 repeat protein [General function pr | 98.76 | |
| KOG1963 | 792 | consensus WD40 repeat protein [General function pr | 98.76 | |
| KOG1976 | 391 | consensus Inositol polyphosphate 5-phosphatase, ty | 98.74 | |
| KOG1517 | 1387 | consensus Guanine nucleotide binding protein MIP1 | 98.72 | |
| PRK05137 | 435 | tolB translocation protein TolB; Provisional | 98.65 | |
| KOG0290 | 364 | consensus Conserved WD40 repeat-containing protein | 98.64 | |
| KOG2110 | 391 | consensus Uncharacterized conserved protein, conta | 98.63 | |
| PRK03629 | 429 | tolB translocation protein TolB; Provisional | 98.63 | |
| KOG2110 | 391 | consensus Uncharacterized conserved protein, conta | 98.61 | |
| KOG1272 | 545 | consensus WD40-repeat-containing subunit of the 18 | 98.6 | |
| KOG2394 | 636 | consensus WD40 protein DMR-N9 [General function pr | 98.6 | |
| TIGR03300 | 377 | assembly_YfgL outer membrane assembly lipoprotein | 98.58 | |
| KOG3881 | 412 | consensus Uncharacterized conserved protein [Funct | 98.56 | |
| PRK02889 | 427 | tolB translocation protein TolB; Provisional | 98.55 | |
| KOG2394 | 636 | consensus WD40 protein DMR-N9 [General function pr | 98.55 | |
| PRK05137 | 435 | tolB translocation protein TolB; Provisional | 98.55 | |
| TIGR02800 | 417 | propeller_TolB tol-pal system beta propeller repea | 98.55 | |
| KOG1310 | 758 | consensus WD40 repeat protein [General function pr | 98.5 | |
| KOG1523 | 361 | consensus Actin-related protein Arp2/3 complex, su | 98.5 | |
| KOG1272 | 545 | consensus WD40-repeat-containing subunit of the 18 | 98.49 | |
| PRK04922 | 433 | tolB translocation protein TolB; Provisional | 98.47 | |
| PF02239 | 369 | Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO | 98.43 | |
| KOG4190 | 1034 | consensus Uncharacterized conserved protein [Funct | 98.41 | |
| PF02239 | 369 | Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO | 98.4 | |
| KOG4547 | 541 | consensus WD40 repeat-containing protein [General | 98.39 | |
| PF08662 | 194 | eIF2A: Eukaryotic translation initiation factor eI | 98.39 | |
| KOG2111 | 346 | consensus Uncharacterized conserved protein, conta | 98.38 | |
| KOG2111 | 346 | consensus Uncharacterized conserved protein, conta | 98.38 | |
| TIGR02800 | 417 | propeller_TolB tol-pal system beta propeller repea | 98.37 | |
| PRK02889 | 427 | tolB translocation protein TolB; Provisional | 98.37 | |
| KOG1354 | 433 | consensus Serine/threonine protein phosphatase 2A, | 98.36 | |
| PF08662 | 194 | eIF2A: Eukaryotic translation initiation factor eI | 98.36 | |
| TIGR03300 | 377 | assembly_YfgL outer membrane assembly lipoprotein | 98.34 | |
| KOG1587 | 555 | consensus Cytoplasmic dynein intermediate chain [C | 98.29 | |
| PRK04792 | 448 | tolB translocation protein TolB; Provisional | 98.28 | |
| PF00400 | 39 | WD40: WD domain, G-beta repeat; InterPro: IPR01978 | 98.28 | |
| KOG2139 | 445 | consensus WD40 repeat protein [General function pr | 98.25 | |
| PRK00178 | 430 | tolB translocation protein TolB; Provisional | 98.25 | |
| PF03372 | 249 | Exo_endo_phos: Endonuclease/Exonuclease/phosphatas | 98.21 | |
| KOG1064 | 2439 | consensus RAVE (regulator of V-ATPase assembly) co | 98.21 | |
| KOG0309 | 1081 | consensus Conserved WD40 repeat-containing protein | 98.21 | |
| KOG2321 | 703 | consensus WD40 repeat protein [General function pr | 98.18 | |
| KOG3881 | 412 | consensus Uncharacterized conserved protein [Funct | 98.17 | |
| KOG1064 | 2439 | consensus RAVE (regulator of V-ATPase assembly) co | 98.17 | |
| KOG3914 | 390 | consensus WD repeat protein WDR4 [Function unknown | 98.11 | |
| KOG2315 | 566 | consensus Predicted translation initiation factor | 98.08 | |
| KOG4497 | 447 | consensus Uncharacterized conserved protein WDR8, | 98.05 | |
| KOG1409 | 404 | consensus Uncharacterized conserved protein, conta | 98.04 | |
| KOG1334 | 559 | consensus WD40 repeat protein [General function pr | 98.02 | |
| KOG1524 | 737 | consensus WD40 repeat-containing protein CHE-2 [Ge | 98.01 | |
| KOG2321 | 703 | consensus WD40 repeat protein [General function pr | 98.01 | |
| PLN02919 | 1057 | haloacid dehalogenase-like hydrolase family protei | 98.0 | |
| PRK11138 | 394 | outer membrane biogenesis protein BamB; Provisiona | 97.99 | |
| PRK00178 | 430 | tolB translocation protein TolB; Provisional | 97.95 | |
| KOG4547 | 541 | consensus WD40 repeat-containing protein [General | 97.95 | |
| PLN02919 | 1057 | haloacid dehalogenase-like hydrolase family protei | 97.95 | |
| PRK04792 | 448 | tolB translocation protein TolB; Provisional | 97.89 | |
| PRK11756 | 268 | exonuclease III; Provisional | 97.89 | |
| KOG1523 | 361 | consensus Actin-related protein Arp2/3 complex, su | 97.87 | |
| KOG2139 | 445 | consensus WD40 repeat protein [General function pr | 97.87 | |
| PF00400 | 39 | WD40: WD domain, G-beta repeat; InterPro: IPR01978 | 97.83 | |
| PRK05421 | 263 | hypothetical protein; Provisional | 97.83 | |
| TIGR02658 | 352 | TTQ_MADH_Hv methylamine dehydrogenase heavy chain. | 97.81 | |
| PF10282 | 345 | Lactonase: Lactonase, 7-bladed beta-propeller; Int | 97.78 | |
| KOG4190 | 1034 | consensus Uncharacterized conserved protein [Funct | 97.76 | |
| KOG1409 | 404 | consensus Uncharacterized conserved protein, conta | 97.73 | |
| PF13360 | 238 | PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A | 97.73 | |
| COG5170 | 460 | CDC55 Serine/threonine protein phosphatase 2A, reg | 97.72 | |
| KOG2695 | 425 | consensus WD40 repeat protein [General function pr | 97.63 | |
| TIGR03395 | 283 | sphingomy sphingomyelin phosphodiesterase. Members | 97.62 | |
| KOG0280 | 339 | consensus Uncharacterized conserved protein [Amino | 97.6 | |
| PF13360 | 238 | PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A | 97.6 | |
| KOG3914 | 390 | consensus WD repeat protein WDR4 [Function unknown | 97.59 | |
| KOG2695 | 425 | consensus WD40 repeat protein [General function pr | 97.57 | |
| COG2706 | 346 | 3-carboxymuconate cyclase [Carbohydrate transport | 97.53 | |
| COG3292 | 671 | Predicted periplasmic ligand-binding sensor domain | 97.53 | |
| PF08450 | 246 | SGL: SMP-30/Gluconolaconase/LRE-like region; Inter | 97.53 | |
| TIGR02658 | 352 | TTQ_MADH_Hv methylamine dehydrogenase heavy chain. | 97.5 | |
| PF10282 | 345 | Lactonase: Lactonase, 7-bladed beta-propeller; Int | 97.49 | |
| COG5354 | 561 | Uncharacterized protein, contains Trp-Asp (WD) rep | 97.4 | |
| TIGR00633 | 255 | xth exodeoxyribonuclease III (xth). This family is | 97.33 | |
| PRK01029 | 428 | tolB translocation protein TolB; Provisional | 97.33 | |
| KOG1354 | 433 | consensus Serine/threonine protein phosphatase 2A, | 97.28 | |
| TIGR00195 | 254 | exoDNase_III exodeoxyribonuclease III. The model b | 97.26 | |
| PRK01029 | 428 | tolB translocation protein TolB; Provisional | 97.22 | |
| KOG2315 | 566 | consensus Predicted translation initiation factor | 97.02 | |
| KOG4497 | 447 | consensus Uncharacterized conserved protein WDR8, | 96.98 | |
| COG4946 | 668 | Uncharacterized protein related to the periplasmic | 96.97 | |
| PRK13911 | 250 | exodeoxyribonuclease III; Provisional | 96.95 | |
| PRK11138 | 394 | outer membrane biogenesis protein BamB; Provisiona | 96.94 | |
| smart00476 | 276 | DNaseIc deoxyribonuclease I. Deoxyribonuclease I c | 96.94 | |
| COG3292 | 671 | Predicted periplasmic ligand-binding sensor domain | 96.87 | |
| KOG2756 | 349 | consensus Predicted Mg2+-dependent phosphodiestera | 96.85 | |
| PF08450 | 246 | SGL: SMP-30/Gluconolaconase/LRE-like region; Inter | 96.82 | |
| KOG0280 | 339 | consensus Uncharacterized conserved protein [Amino | 96.8 | |
| PRK04043 | 419 | tolB translocation protein TolB; Provisional | 96.79 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 96.76 | |
| KOG4714 | 319 | consensus Nucleoporin [Nuclear structure] | 96.76 | |
| KOG0309 | 1081 | consensus Conserved WD40 repeat-containing protein | 96.74 | |
| smart00320 | 40 | WD40 WD40 repeats. Note that these repeats are per | 96.68 | |
| COG3568 | 259 | ElsH Metal-dependent hydrolase [General function p | 96.66 | |
| PF15492 | 282 | Nbas_N: Neuroblastoma-amplified sequence, N termin | 96.65 | |
| COG4946 | 668 | Uncharacterized protein related to the periplasmic | 96.52 | |
| KOG1912 | 1062 | consensus WD40 repeat protein [General function pr | 96.42 | |
| COG0708 | 261 | XthA Exonuclease III [DNA replication, recombinati | 96.4 | |
| PRK04043 | 419 | tolB translocation protein TolB; Provisional | 96.24 | |
| PLN03144 | 606 | Carbon catabolite repressor protein 4 homolog; Pro | 96.23 | |
| COG2706 | 346 | 3-carboxymuconate cyclase [Carbohydrate transport | 96.21 | |
| PF11768 | 545 | DUF3312: Protein of unknown function (DUF3312); In | 96.2 | |
| COG5170 | 460 | CDC55 Serine/threonine protein phosphatase 2A, reg | 96.12 | |
| KOG1645 | 463 | consensus RING-finger-containing E3 ubiquitin liga | 96.1 | |
| KOG4714 | 319 | consensus Nucleoporin [Nuclear structure] | 95.85 | |
| PF14783 | 111 | BBS2_Mid: Ciliary BBSome complex subunit 2, middle | 95.84 | |
| PF07433 | 305 | DUF1513: Protein of unknown function (DUF1513); In | 95.82 | |
| PF15492 | 282 | Nbas_N: Neuroblastoma-amplified sequence, N termin | 95.81 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 95.75 | |
| KOG2314 | 698 | consensus Translation initiation factor 3, subunit | 95.7 | |
| KOG1912 | 1062 | consensus WD40 repeat protein [General function pr | 95.6 | |
| KOG2444 | 238 | consensus WD40 repeat protein [General function pr | 95.52 | |
| smart00320 | 40 | WD40 WD40 repeats. Note that these repeats are per | 95.41 | |
| KOG1275 | 1118 | consensus PAB-dependent poly(A) ribonuclease, subu | 95.36 | |
| KOG4532 | 344 | consensus WD40-like repeat containing protein [Gen | 95.23 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 95.23 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 94.99 | |
| KOG2338 | 495 | consensus Transcriptional effector CCR4-related pr | 94.91 | |
| KOG3621 | 726 | consensus WD40 repeat-containing protein [General | 94.7 | |
| PRK15251 | 271 | cytolethal distending toxin subunit CdtB; Provisio | 94.65 | |
| PF07433 | 305 | DUF1513: Protein of unknown function (DUF1513); In | 94.62 | |
| COG3386 | 307 | Gluconolactonase [Carbohydrate transport and metab | 94.61 | |
| PF04762 | 928 | IKI3: IKI3 family; InterPro: IPR006849 Members of | 94.38 | |
| KOG4649 | 354 | consensus PQQ (pyrrolo-quinoline quinone) repeat p | 94.06 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 93.86 | |
| KOG0882 | 558 | consensus Cyclophilin-related peptidyl-prolyl cis- | 93.76 | |
| KOG3621 | 726 | consensus WD40 repeat-containing protein [General | 93.6 | |
| PF11768 | 545 | DUF3312: Protein of unknown function (DUF3312); In | 93.43 | |
| COG5354 | 561 | Uncharacterized protein, contains Trp-Asp (WD) rep | 93.43 | |
| KOG1645 | 463 | consensus RING-finger-containing E3 ubiquitin liga | 93.22 | |
| COG3386 | 307 | Gluconolactonase [Carbohydrate transport and metab | 93.03 | |
| KOG2444 | 238 | consensus WD40 repeat protein [General function pr | 92.62 | |
| PF14783 | 111 | BBS2_Mid: Ciliary BBSome complex subunit 2, middle | 92.59 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 92.38 | |
| PF00780 | 275 | CNH: CNH domain; InterPro: IPR001180 Based on sequ | 92.03 | |
| KOG1832 | 1516 | consensus HIV-1 Vpr-binding protein [Cell cycle co | 91.83 | |
| KOG3873 | 422 | consensus Sphingomyelinase family protein [Signal | 91.71 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 91.68 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 91.57 | |
| PTZ00297 | 1452 | pantothenate kinase; Provisional | 91.56 | |
| PF08553 | 794 | VID27: VID27 cytoplasmic protein; InterPro: IPR013 | 90.96 | |
| KOG2079 | 1206 | consensus Vacuolar assembly/sorting protein VPS8 [ | 90.81 | |
| KOG4640 | 665 | consensus Anaphase-promoting complex (APC), subuni | 90.72 | |
| KOG2079 | 1206 | consensus Vacuolar assembly/sorting protein VPS8 [ | 90.17 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 90.15 | |
| KOG4532 | 344 | consensus WD40-like repeat containing protein [Gen | 89.7 | |
| KOG1832 | 1516 | consensus HIV-1 Vpr-binding protein [Cell cycle co | 89.57 | |
| PF04841 | 410 | Vps16_N: Vps16, N-terminal region; InterPro: IPR00 | 89.49 | |
| PF08553 | 794 | VID27: VID27 cytoplasmic protein; InterPro: IPR013 | 89.01 | |
| KOG1275 | 1118 | consensus PAB-dependent poly(A) ribonuclease, subu | 88.99 | |
| PF12894 | 47 | Apc4_WD40: Anaphase-promoting complex subunit 4 WD | 88.47 | |
| KOG2314 | 698 | consensus Translation initiation factor 3, subunit | 87.59 | |
| PF06433 | 342 | Me-amine-dh_H: Methylamine dehydrogenase heavy cha | 87.3 | |
| cd00216 | 488 | PQQ_DH Dehydrogenases with pyrrolo-quinoline quino | 87.22 | |
| KOG0882 | 558 | consensus Cyclophilin-related peptidyl-prolyl cis- | 86.83 | |
| KOG4640 | 665 | consensus Anaphase-promoting complex (APC), subuni | 86.47 | |
| PRK13616 | 591 | lipoprotein LpqB; Provisional | 86.33 | |
| PF14870 | 302 | PSII_BNR: Photosynthesis system II assembly factor | 84.01 | |
| KOG2395 | 644 | consensus Protein involved in vacuole import and d | 83.17 |
| >KOG0566 consensus Inositol-1,4,5-triphosphate 5-phosphatase (synaptojanin), INP51/INP52/INP53 family [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-65 Score=579.24 Aligned_cols=276 Identities=33% Similarity=0.565 Sum_probs=249.7
Q ss_pred CCCCeeeccccCCCCCcchhhhhhcccccccccccceeEEEEEEEeCCCCCC-cccccccccCC--C---CCceEEEEEe
Q 003171 516 NHGGIRGWNVTSPGPLDSILCKELAGKEFLYTRMENLKILAGTWNVGQGRAS-QDALISWLGSA--A---SDVGIVVVGL 589 (842)
Q Consensus 516 ~DgtIrvWd~~~~~~~d~~l~~~l~~r~~~y~~~~~~~i~~~twNv~~~~~~-~~~l~~~l~~~--~---~~~di~vigl 589 (842)
.|..+.+ ++|+...+.++|.+++.+|+...+++||+||||||+..+. .++|.+||... . ..+|||||||
T Consensus 506 ~q~~v~L-----~dpv~~yv~~~L~er~~eyt~~k~i~IfvgTfNvNG~s~~~k~~L~~WLfp~s~~~~~~~aDIyviG~ 580 (1080)
T KOG0566|consen 506 AQSAVIL-----YDPVHEYVLKELRERRSEYTEPKDISIFVGTFNVNGRSAAFKDDLSDWLFPISRGKEFSPADIYVIGF 580 (1080)
T ss_pred ccchhhh-----cCchhHHHHHHHHHhhhhhccccceEEEEEeeeccCccccchhhHHhhccccccCCcCCcCcEEEEee
Confidence 3555544 4568888999999999999999999999999999995443 36899999864 1 2489999999
Q ss_pred ecc-cCccchhhhhhhhhhcccCCCcchhhHHHHHhhhccC-CCceEEEeeeeceeeEEEEEEeccccCccCceeeceee
Q 003171 590 QEV-EMGAGFLAMSAAKETVGLEGSAVGHWWLDMIGKILDD-GSTFERVGSRQLAGLLIAVWVRKNLKDYVGDVDVAAVP 667 (842)
Q Consensus 590 QE~-~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~l~~~l~~-~~~y~~v~s~~l~g~~l~vf~r~~~~~~i~~v~~~~v~ 667 (842)
||+ ++++|.+.. .+....+.|++.|+++|+. ...|+++.|.||+|++|++|+|.+..++|++|+.+++|
T Consensus 581 eEvVeLnag~iv~---------As~tk~~~Wee~i~~~Ln~~~~kYvlL~s~QlvGv~L~iF~r~~~~p~Ik~V~~~tkK 651 (1080)
T KOG0566|consen 581 EEVVELNAGNIVS---------ASTTKRRFWEEKILKTLNRYKNKYVLLRSEQLVGVCLLLFIRPDHAPYIKDVAGDTKK 651 (1080)
T ss_pred hhhhhcCccceec---------cChHHHHHHHHHHHHHhcCCCCceEEEehhhhheeeEEEEEcccccchhhhcccceee
Confidence 997 688875421 1234568999999999987 78999999999999999999999999999999999999
Q ss_pred cccCcccCCCCeeEEEEEEeCeEEEEEeecCcCCcchHHHHHHHHHHHHHhcCcCCCCCccchhccCCCceeeecccCCC
Q 003171 668 CGFGRAIGNKGAVGLRVRVYDRIMCFVNCHFAAHLEAVNRRNADFDHVYRTMTFCRPSNLCSAAAAGASSVVQMLRSTNP 747 (842)
Q Consensus 668 ~G~~~~~gnKG~v~i~~~i~~~~~~Fv~~HLaa~~~~~~~Rn~~~~~I~~~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~ 747 (842)
|||||+.||||||+|||.+++|+|||||+||||+++|+++||.||.+|.++|+|++..
T Consensus 652 TGfGG~tgNKGAVAIrf~~~~TsfCFv~SHlAAG~snv~ERn~DY~tI~r~l~Fp~Gr---------------------- 709 (1080)
T KOG0566|consen 652 TGFGGATGNKGAVAIRFVYHATSFCFVCSHLAAGQSNVEERNEDYKTIARKLRFPRGR---------------------- 709 (1080)
T ss_pred cccccccCCCceEEEEEEeccccEEEEecccccccchHhhhhhhHHHHHHhccccCCc----------------------
Confidence 9999999999999999999999999999999999999999999999999999999753
Q ss_pred CCCCccCCCCCcCcccEEEEeccceeeecCCChHHHHHHhhhcchHHHHHhhhHHHHhhcCCcccCcccCCCCCCCCccc
Q 003171 748 LSGLTVEGVPELSEADMVIFLGDFNYRLDGITYDEARDFISQRCFDWLRERDQLRAEMEAGNVFQGMREADIKFPPTYKF 827 (842)
Q Consensus 748 ~~~~~~~~~~~~~~~d~vf~~GDlNyRi~~~~~~~~~~~i~~~~~~~L~~~DQL~~~~~~~~~f~gf~E~~I~F~PTYK~ 827 (842)
.|.+||+|||||||||||++ ++||++++|.+++|+.|+++|||+++|.+|.+|.||.|++|+|+|||||
T Consensus 710 ----------~I~~HD~ifW~GDFNYRI~l-~nEEVr~~v~~~d~~kL~e~DQL~~q~~~G~vF~gF~E~~ltF~PTYKy 778 (1080)
T KOG0566|consen 710 ----------MIFSHDYIFWLGDFNYRIDL-SNEEVRRLVRNQDLDKLLEYDQLTQQMNAGQVFPGFHEGQLTFPPTYKY 778 (1080)
T ss_pred ----------cccCCceEEEecccceeecC-CHHHHHHHHHhccHHHHhhHHHHHHHHhcCcccccccccccccCCcccc
Confidence 36789999999999999996 9999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCccccCC
Q 003171 828 EKHLAGLAEACSCL 841 (842)
Q Consensus 828 ~~~~~~~~~Ydt~~ 841 (842)
|.|| +.||||.
T Consensus 779 D~gT---d~YDTSe 789 (1080)
T KOG0566|consen 779 DPGT---DDYDTSE 789 (1080)
T ss_pred cCCC---Cccccch
Confidence 9998 7999985
|
|
| >PLN03191 Type I inositol-1,4,5-trisphosphate 5-phosphatase 2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-58 Score=511.92 Aligned_cols=192 Identities=32% Similarity=0.587 Sum_probs=172.0
Q ss_pred hhHHHHHhhhccCCCceEEEeeeeceeeEEEEEEeccccCccCceeeceeecccCcccCCCCeeEEEEEEeCeEEEEEee
Q 003171 617 HWWLDMIGKILDDGSTFERVGSRQLAGLLIAVWVRKNLKDYVGDVDVAAVPCGFGRAIGNKGAVGLRVRVYDRIMCFVNC 696 (842)
Q Consensus 617 ~~w~~~l~~~l~~~~~y~~v~s~~l~g~~l~vf~r~~~~~~i~~v~~~~v~~G~~~~~gnKG~v~i~~~i~~~~~~Fv~~ 696 (842)
|+|...+.........|++|.|.+|+||+|+||||+++.++|++|+++.|+||++|++||||||+|||+|++++||||||
T Consensus 348 ~~~~~~~~~~~~~~~~YvkV~S~qLvGl~L~VFvk~~l~~~Is~V~~s~V~tGl~G~~GNKGAVaIr~~l~~Ts~cFVn~ 427 (621)
T PLN03191 348 QLPEDLIKDCRKVKQKYVRIVSKQMVGIYVSVWVRKRLRRHINNLKVSPVGVGLMGYMGNKGSVSISMSLFQSRLCFVCS 427 (621)
T ss_pred hhhhHHHHhhccCCCCEEEEEEEeeeeEEEEEEEehhhhhhcccceeeeEeeccccccccceeEEEEEEEcCcEEEEEEe
Confidence 34555555555556789999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCcCCcc--hHHHHHHHHHHHHHhcCcCCCCCccchhccCCCceeeecccCCCCCCCccCCCCCcCcccEEEEeccceee
Q 003171 697 HFAAHLE--AVNRRNADFDHVYRTMTFCRPSNLCSAAAAGASSVVQMLRSTNPLSGLTVEGVPELSEADMVIFLGDFNYR 774 (842)
Q Consensus 697 HLaa~~~--~~~~Rn~~~~~I~~~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vf~~GDlNyR 774 (842)
|||||++ ++++||+||.+|++++.|...... .....|.+||+||||||||||
T Consensus 428 HLAAg~~~~~~~rRN~D~~~I~~~l~F~~~~~~--------------------------~~~~~I~dhD~vFWlGDLNYR 481 (621)
T PLN03191 428 HLTSGHKDGAEQRRNADVYEIIRRTRFSSVLDT--------------------------DQPQTIPSHDQIFWFGDLNYR 481 (621)
T ss_pred ccccccccchHHHHHHHHHHHHhccccCccccc--------------------------CCCccccccceEEEecCcccc
Confidence 9999875 578999999999999999742211 001236789999999999999
Q ss_pred ecCCChHHHHHHhhhcchHHHHHhhhHHHHhhcCCcccCcccCCCCCCCCcccccCCCCCCccc
Q 003171 775 LDGITYDEARDFISQRCFDWLRERDQLRAEMEAGNVFQGMREADIKFPPTYKFEKHLAGLAEAC 838 (842)
Q Consensus 775 i~~~~~~~~~~~i~~~~~~~L~~~DQL~~~~~~~~~f~gf~E~~I~F~PTYK~~~~~~~~~~Yd 838 (842)
|++ ++++++++|++++|+.|+++|||+++|++|++|.||.|++|+|||||||++|+ +.||
T Consensus 482 Idl-~~~ev~~lI~~~~~~~LL~~DQL~~e~~~g~vF~GF~Eg~I~FpPTYKYd~gS---d~Yd 541 (621)
T PLN03191 482 LNM-LDTEVRKLVAQKRWDELINSDQLIKELRSGHVFDGWKEGPIKFPPTYKYEINS---DRYV 541 (621)
T ss_pred ccC-CHHHHHHHHhhccHHHHHHHhHHHHHHHcCCccCCcccCCccCCCCcccccCC---cccc
Confidence 996 89999999999999999999999999999999999999999999999999998 6787
|
|
| >smart00128 IPPc Inositol polyphosphate phosphatase, catalytic domain homologues | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-56 Score=486.29 Aligned_cols=247 Identities=36% Similarity=0.640 Sum_probs=219.0
Q ss_pred ceeEEEEEEEeCCCC-CCcccccccccCC-----CCCceEEEEEeecc-cCccchhhhhhhhhhcccCCCcchhhHHHHH
Q 003171 551 NLKILAGTWNVGQGR-ASQDALISWLGSA-----ASDVGIVVVGLQEV-EMGAGFLAMSAAKETVGLEGSAVGHWWLDMI 623 (842)
Q Consensus 551 ~~~i~~~twNv~~~~-~~~~~l~~~l~~~-----~~~~di~viglQE~-~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~l 623 (842)
+++|+++|||||+.+ +++++|.+||... ..+||||||||||+ ++.+..+.+ ..+.....|.+.+
T Consensus 2 ~~~v~v~TwNv~~~~~~p~~~l~~~l~~~~~~~~~~~pDI~viglQEi~~~~~~~~~~---------~~~~~~~~W~~~i 72 (310)
T smart00128 2 DIKVLVGTWNVGGLKADPKVDVTSWLFQKIDVKQSEKPDIYVIGLQEVVDLENGVLLE---------TIAGKERLWSKLI 72 (310)
T ss_pred ceEEEEEEEECCCccCCChhhHHHhhccccccccCCCCCEEEEEeeeecccchhhhhh---------ccchhHHHHHHHH
Confidence 478999999999875 5678899999853 25689999999999 554432211 2234568899999
Q ss_pred hhhccCCCceEEEeeeeceeeEEEEEEeccccCccCceeeceeecccCcccCCCCeeEEEEEEeCeEEEEEeecCcCCcc
Q 003171 624 GKILDDGSTFERVGSRQLAGLLIAVWVRKNLKDYVGDVDVAAVPCGFGRAIGNKGAVGLRVRVYDRIMCFVNCHFAAHLE 703 (842)
Q Consensus 624 ~~~l~~~~~y~~v~s~~l~g~~l~vf~r~~~~~~i~~v~~~~v~~G~~~~~gnKG~v~i~~~i~~~~~~Fv~~HLaa~~~ 703 (842)
...|..+..|.++++.+|+||+|+||+|+++.++|++|+++.+++|+++.+||||||+++|++.+++||||||||+||++
T Consensus 73 ~~~l~~~~~Y~~v~~~~l~gi~l~vf~~~~~~~~i~~v~~~~v~~G~~~~~~nKG~v~i~~~~~~~~~~fv~~HL~a~~~ 152 (310)
T smart00128 73 ESSLNGDGQYNVLAKVRLVGILVLVFVKANHLVYIKDVETFTVKTGMGGLWGNKGAVAVRFKLSDTSFCFVNSHLAAGAS 152 (310)
T ss_pred HHhcCCCCceEEEeeeeecceEEEEEEehhhcCccceeEeeeeeccccceeecCceEEEEEEEcCcEEEEEeeccccccc
Confidence 99997568999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHhcCcCCCCCccchhccCCCceeeecccCCCCCCCccCCCCCcCcccEEEEeccceeeecCCCh-HH
Q 003171 704 AVNRRNADFDHVYRTMTFCRPSNLCSAAAAGASSVVQMLRSTNPLSGLTVEGVPELSEADMVIFLGDFNYRLDGITY-DE 782 (842)
Q Consensus 704 ~~~~Rn~~~~~I~~~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vf~~GDlNyRi~~~~~-~~ 782 (842)
++++||+||+.|++++.|+.... ..+.++|++||||||||||++ ++ ++
T Consensus 153 ~~~~R~~~~~~I~~~~~f~~~~~------------------------------~~~~~~d~~f~~GDlNyRi~~-~~~~~ 201 (310)
T smart00128 153 NVEQRNQDYKTILRALSFPERAE------------------------------LSQFDHDVVFWFGDLNFRLDS-PSYEE 201 (310)
T ss_pred hhhhhHHHHHHHHHhcCCCCCcc------------------------------ccccccceEEEecCcceeecC-CCHHH
Confidence 99999999999999998875321 114579999999999999997 55 89
Q ss_pred HHHHhhhcchHHHHHhhhHHHHhhcCCcccCcccCCCCCCCCcccc-cCCCCCCccccC
Q 003171 783 ARDFISQRCFDWLRERDQLRAEMEAGNVFQGMREADIKFPPTYKFE-KHLAGLAEACSC 840 (842)
Q Consensus 783 ~~~~i~~~~~~~L~~~DQL~~~~~~~~~f~gf~E~~I~F~PTYK~~-~~~~~~~~Ydt~ 840 (842)
++++|++++|+.|+++|||+.+|+++++|.||.|++|+|||||||+ .++ ++|||+
T Consensus 202 v~~~i~~~~~~~Ll~~DQL~~~~~~~~~f~~f~E~~I~F~PTYK~~~~~t---~~Yd~~ 257 (310)
T smart00128 202 VRRKISKKEFDDLLEKDQLNRQKEAGKVFKGFQEGPITFPPTYKYDSVGT---ETYDTS 257 (310)
T ss_pred HHHHHhhCcHHHHhhhhhHHHHhhcccccCcCccCCcCCCCCeeecCCCC---ccccCc
Confidence 9999999999999999999999999999999999999999999999 776 789998
|
Mg(2+)-dependent/Li(+)-sensitive enzymes. |
| >COG5411 Phosphatidylinositol 5-phosphate phosphatase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-48 Score=414.01 Aligned_cols=270 Identities=31% Similarity=0.455 Sum_probs=239.2
Q ss_pred CCCCCcchhhhhhcccccccccccceeEEEEEEEeCCCCCCcccccccccC---CCCCceEEEEEeecc-cCccchhhhh
Q 003171 527 SPGPLDSILCKELAGKEFLYTRMENLKILAGTWNVGQGRASQDALISWLGS---AASDVGIVVVGLQEV-EMGAGFLAMS 602 (842)
Q Consensus 527 ~~~~~d~~l~~~l~~r~~~y~~~~~~~i~~~twNv~~~~~~~~~l~~~l~~---~~~~~di~viglQE~-~~~~~~~~~~ 602 (842)
.|+|..-.+.+.+.+++..|....++.+|++++|.+++.+ ...++.||.+ ...-+|+||+||||+ ++.++.+. +
T Consensus 5 i~~p~~~y~~~~l~~~~sk~~~~~~~~~f~~~~n~~~~~~-k~~~k~~lfP~~~~~~~~dlyVvGlQEvv~lt~~sil-s 82 (460)
T COG5411 5 IYDPRHPYIVAVLRQRRSKYVIEKDVSIFVSTFNPPGKPP-KASTKRWLFPEIEATELADLYVVGLQEVVELTPGSIL-S 82 (460)
T ss_pred ccCCCchhHHHHHHHHhhhheeecceeeEeccccCCCCCc-hhhhhhhcccccccccccceEEeccceeeeccchhhc-c
Confidence 4567777788888889999999999999999999998766 7788999986 234589999999997 56665431 1
Q ss_pred hhhhhcccCCCcchhhHHHHHhhhcc---CCCceEEEeeeeceeeEEEEEEeccccCccCceeeceeecccCcccCCCCe
Q 003171 603 AAKETVGLEGSAVGHWWLDMIGKILD---DGSTFERVGSRQLAGLLIAVWVRKNLKDYVGDVDVAAVPCGFGRAIGNKGA 679 (842)
Q Consensus 603 ~~~~~~~~~~~~~~~~w~~~l~~~l~---~~~~y~~v~s~~l~g~~l~vf~r~~~~~~i~~v~~~~v~~G~~~~~gnKG~ 679 (842)
.......+.|+..+...|+ ....|.++.+.||+|+.+.||.+.+..+.+.+|+...-+||+||..+|||+
T Consensus 83 -------~~p~~rl~~wes~~~~~Ln~~~~~eky~~l~s~q~~~~~~~vf~~~~~~~v~~~V~~~~~KtG~gg~s~nKGa 155 (460)
T COG5411 83 -------ADPYDRLRIWESKVLDCLNGAQSDEKYSLLRSPQLGGILLRVFSLATNLPVVKPVSGTVKKTGFGGSSSNKGA 155 (460)
T ss_pred -------CCcccccchhHHHHHHHhcccccCCceEEecchhccCcceEEeeeccccceeccccccccccccceecccccc
Confidence 1112344789999999887 357899999999999999999999999999999999999999999999999
Q ss_pred eEEEEEEeCeEEEEEeecCcCCcchHHHHHHHHHHHHHhcCcCCCCCccchhccCCCceeeecccCCCCCCCccCCCCCc
Q 003171 680 VGLRVRVYDRIMCFVNCHFAAHLEAVNRRNADFDHVYRTMTFCRPSNLCSAAAAGASSVVQMLRSTNPLSGLTVEGVPEL 759 (842)
Q Consensus 680 v~i~~~i~~~~~~Fv~~HLaa~~~~~~~Rn~~~~~I~~~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 759 (842)
|+++|.+.++.+|||||||+||.+|+++|+.||+.|.+.++|.+.. .+
T Consensus 156 v~i~~~~~~t~~cFv~shlaag~~N~eeR~~Dy~~I~~~i~f~~g~--------------------------------~I 203 (460)
T COG5411 156 VAIRFNYERTSFCFVNSHLAAGVNNIEERIFDYRSIASNICFSRGL--------------------------------RI 203 (460)
T ss_pred cceeEEeecCCcEEEecchhcccccHHHHHHHHHHHHHheecCCCc--------------------------------ee
Confidence 9999999999999999999999999999999999999999998643 26
Q ss_pred CcccEEEEeccceeeecCCChHHHHHHhhhcc--hHHHHHhhhHHHHhhcCCcccCcccCCCCCCCCcccccCCCCCCcc
Q 003171 760 SEADMVIFLGDFNYRLDGITYDEARDFISQRC--FDWLRERDQLRAEMEAGNVFQGMREADIKFPPTYKFEKHLAGLAEA 837 (842)
Q Consensus 760 ~~~d~vf~~GDlNyRi~~~~~~~~~~~i~~~~--~~~L~~~DQL~~~~~~~~~f~gf~E~~I~F~PTYK~~~~~~~~~~Y 837 (842)
.+||++||+|||||||.+ ++++++..+.... +++|+++|||.+||+.|++|.||.|..|+|||||||+.|+ ++|
T Consensus 204 ~~hdti~w~GDlNyRVts-~~e~v~~~~~~~~g~~~~l~~~DqL~~e~~~g~~f~~f~E~~i~FpPTYKfd~gt---~~y 279 (460)
T COG5411 204 YDHDTIFWLGDLNYRVTS-TNEEVRPEIASDDGRLDKLFEYDQLLWEMEVGNVFPGFKEPVITFPPTYKFDYGT---DEY 279 (460)
T ss_pred cccceEEEecccCceeec-CchhcchhhhCCcchhhhhhhhhhHhhhhcccccccceecccccCCCceEeecCC---ccc
Confidence 789999999999999997 8999998887766 8899999999999999999999999999999999999998 799
Q ss_pred ccCC
Q 003171 838 CSCL 841 (842)
Q Consensus 838 dt~~ 841 (842)
||++
T Consensus 280 dtsd 283 (460)
T COG5411 280 DTSD 283 (460)
T ss_pred cccc
Confidence 9986
|
|
| >KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-40 Score=341.47 Aligned_cols=325 Identities=18% Similarity=0.214 Sum_probs=248.5
Q ss_pred CCEEEE-ecCCCEEEEeCCCCccccccccccccCCCCCCCCCCeeeeeecCCCeEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 003171 142 EEQLWA-GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGHRDGRIMCWKM 220 (842)
Q Consensus 142 ~~~l~~-~~D~~vrvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~V~~la~dpdg~~LaSGs~DGtIrlWdl 220 (842)
+..|.. +.|.++|+||+.+-.+. |+-..| .++|+|++++|||+.||||+.||+|++||.
T Consensus 127 g~~l~tGsGD~TvR~WD~~TeTp~-------------------~t~KgH-~~WVlcvawsPDgk~iASG~~dg~I~lwdp 186 (480)
T KOG0271|consen 127 GSRLVTGSGDTTVRLWDLDTETPL-------------------FTCKGH-KNWVLCVAWSPDGKKIASGSKDGSIRLWDP 186 (480)
T ss_pred CceEEecCCCceEEeeccCCCCcc-------------------eeecCC-ccEEEEEEECCCcchhhccccCCeEEEecC
Confidence 456666 45999999999763321 222344 889999999999999999999999999999
Q ss_pred CCCccCCCCCcceeEEecccCCcEEEEEEecC-----C-CEEEeeCCCcEEEEeCCCccceeecCCCceeeeEEEEeece
Q 003171 221 NARLLDSDDGFGEVLSWQAHRGPVLSLCISSY-----G-DLWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSY 294 (842)
Q Consensus 221 ~~g~~~~~~~~~~~~~l~gH~~~V~slafs~d-----G-~L~SgS~DgtIrvWd~~t~~~~l~~~~~~~~~~~l~~~~s~ 294 (842)
.+|. +....|.||+.+|++|+|-|- . +|+|+|.||+|||||+..+.+.+.+.
T Consensus 187 ktg~-------~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~ls--------------- 244 (480)
T KOG0271|consen 187 KTGQ-------QIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLS--------------- 244 (480)
T ss_pred CCCC-------cccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEec---------------
Confidence 9885 566789999999999999763 3 38999999999999996654444332
Q ss_pred eecccceeccceeeeecCCEEEEEEcCCCCEEEEeC-CCcEEEEEccCCcEEEEeecCCceEeeeecccCC---Cccccc
Q 003171 295 IDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVFNIDGQIENRVDMSLLP---DFAMED 370 (842)
Q Consensus 295 ~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s-~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~---~~~~~~ 370 (842)
+| +..|.|+..+ +.+.+++++ |+||++|++..|.+++.|.+|++++|.++++..- ...++.
T Consensus 245 ----gH----------T~~VTCvrwG-G~gliySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~ 309 (480)
T KOG0271|consen 245 ----GH----------TASVTCVRWG-GEGLIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDH 309 (480)
T ss_pred ----cC----------ccceEEEEEc-CCceEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhcccccc
Confidence 23 5568888876 456788887 7899999999999999999999999988776421 111111
Q ss_pred ceEEEEEecC-CCCccce--eeeEeecCcceEEecCCcEEEEee----c---CccccCCCceEEEEECCCCc-EEEEeCC
Q 003171 371 EFKTKIVTSS-KKDKAQS--SFGFFQRSRNAIMGAADAVRRVAA----K---GGFGDDNRRTEALTTSIDGM-IWTGGAN 439 (842)
Q Consensus 371 ~~~~~~~s~~-~~~~~~~--s~~~~~~~~~~~~g~~~~v~~v~~----~---g~~~~~~~~v~al~~s~dg~-l~Sgs~D 439 (842)
..+ +.-+.. .+.++.. ....-+.+.....|+.+...-+|. + ....+|...|..+.||||++ ++|+|-|
T Consensus 310 t~~-~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFD 388 (480)
T KOG0271|consen 310 TGR-KPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASASFD 388 (480)
T ss_pred ccc-cCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccccchhhhhchhhheeeEEECCCccEEEEeecc
Confidence 100 000000 0000000 000111123456777777666664 1 23457889999999999998 8999999
Q ss_pred CeEEEEcC-CCCeeeeeecCCccEEEEEe--cCCEEEEEecCcEEEEEeCC-CcccccccccccCEEEEE--eCCCEEEE
Q 003171 440 GLLLQWDP-NGNRLQDFQYLPFAVQCLCT--FGSQIWVGYMNGIVQVLDLE-GNLLGGWVAHSSPVIKMA--VGAGYIFT 513 (842)
Q Consensus 440 gtIrlWD~-~g~~l~~l~~H~~~V~sls~--dG~~LasGs~DgtIrlWD~~-g~~i~~l~gH~~~V~sla--~dg~~l~S 513 (842)
+.|||||. +|+.+.+|.||-.+|+.++. |.+.|+|||.|.|+++||+. .++...|.||.+.|.++. +||+.++|
T Consensus 389 kSVkLW~g~tGk~lasfRGHv~~VYqvawsaDsRLlVS~SkDsTLKvw~V~tkKl~~DLpGh~DEVf~vDwspDG~rV~s 468 (480)
T KOG0271|consen 389 KSVKLWDGRTGKFLASFRGHVAAVYQVAWSADSRLLVSGSKDSTLKVWDVRTKKLKQDLPGHADEVFAVDWSPDGQRVAS 468 (480)
T ss_pred cceeeeeCCCcchhhhhhhccceeEEEEeccCccEEEEcCCCceEEEEEeeeeeecccCCCCCceEEEEEecCCCceeec
Confidence 99999999 89999999999999998864 77899999999999999998 467889999999999997 69999999
Q ss_pred EcCCCCeeecc
Q 003171 514 LANHGGIRGWN 524 (842)
Q Consensus 514 ~S~DgtIrvWd 524 (842)
|+.|+.+|+|.
T Consensus 469 ggkdkv~~lw~ 479 (480)
T KOG0271|consen 469 GGKDKVLRLWR 479 (480)
T ss_pred CCCceEEEeec
Confidence 99999999995
|
|
| >KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-36 Score=311.53 Aligned_cols=320 Identities=17% Similarity=0.249 Sum_probs=221.2
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCCC-EEEeeCCCcEEEEeC
Q 003171 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPW 269 (842)
Q Consensus 191 ~~~V~~la~dpdg~~LaSGs~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~ 269 (842)
..+|.|++|+|+|..|+||+-|.|+|+||+.+. .+..+.+||...|.||+++|||+ |+||+.||+|++||.
T Consensus 115 ~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~Te--------Tp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdp 186 (480)
T KOG0271|consen 115 GEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTE--------TPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDP 186 (480)
T ss_pred CCcEEEEEecCCCceEEecCCCceEEeeccCCC--------CcceeecCCccEEEEEEECCCcchhhccccCCeEEEecC
Confidence 789999999999999999999999999999997 57788999999999999999998 899999999999999
Q ss_pred CCcccee-ecCCCceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcCCCCEEEEeC-CCcEEEEEccCCcEEEE
Q 003171 270 EAIEKAL-SLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKV 347 (842)
Q Consensus 270 ~t~~~~l-~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s-~~tI~lWD~~tg~~l~~ 347 (842)
.+++... .+..+..++.++.-++- -..+..+++++++ |++++|||+..|.++.+
T Consensus 187 ktg~~~g~~l~gH~K~It~Lawep~------------------------hl~p~~r~las~skDg~vrIWd~~~~~~~~~ 242 (480)
T KOG0271|consen 187 KTGQQIGRALRGHKKWITALAWEPL------------------------HLVPPCRRLASSSKDGSVRIWDTKLGTCVRT 242 (480)
T ss_pred CCCCcccccccCcccceeEEeeccc------------------------ccCCCccceecccCCCCEEEEEccCceEEEE
Confidence 8765432 22333333333311110 0122334666665 78999999999999999
Q ss_pred eecCCceEeeeecccCC-CcccccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEee-------cCccccCC
Q 003171 348 FNIDGQIENRVDMSLLP-DFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAA-------KGGFGDDN 419 (842)
Q Consensus 348 l~~~~~~~~~~~~s~~~-~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~-------~g~~~~~~ 419 (842)
+.+|...+..+..-... ..+...+-++++|.... ++- -+.+.||+..+..++. .|.|....
T Consensus 243 lsgHT~~VTCvrwGG~gliySgS~DrtIkvw~a~d-G~~----------~r~lkGHahwvN~lalsTdy~LRtgaf~~t~ 311 (480)
T KOG0271|consen 243 LSGHTASVTCVRWGGEGLIYSGSQDRTIKVWRALD-GKL----------CRELKGHAHWVNHLALSTDYVLRTGAFDHTG 311 (480)
T ss_pred eccCccceEEEEEcCCceEEecCCCceEEEEEccc-hhH----------HHhhcccchheeeeeccchhhhhcccccccc
Confidence 99987654332211100 00001111122222210 000 0123333333332221 12221100
Q ss_pred Cc--------------eEEEEECCCCcEEEEeCCCeEEEEcC-C-CCeeeeeecCCccEEEE--EecCCEEEEEecCcEE
Q 003171 420 RR--------------TEALTTSIDGMIWTGGANGLLLQWDP-N-GNRLQDFQYLPFAVQCL--CTFGSQIWVGYMNGIV 481 (842)
Q Consensus 420 ~~--------------v~al~~s~dg~l~Sgs~DgtIrlWD~-~-g~~l~~l~~H~~~V~sl--s~dG~~LasGs~DgtI 481 (842)
.. -+++.-....+|+|||.|.++.+|+. . .+++..+.+|..-|+.+ +|||++||+||.|..|
T Consensus 312 ~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkSV 391 (480)
T KOG0271|consen 312 RKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASASFDKSV 391 (480)
T ss_pred ccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccccchhhhhchhhheeeEEECCCccEEEEeecccce
Confidence 00 00011111135999999999999999 3 57899999999999976 5689999999999999
Q ss_pred EEEeCC-CcccccccccccCEEEEEe--CCCEEEEEcCCCCeeeccccCCCCCcchhhhhhcccccccccccceeEEEEE
Q 003171 482 QVLDLE-GNLLGGWVAHSSPVIKMAV--GAGYIFTLANHGGIRGWNVTSPGPLDSILCKELAGKEFLYTRMENLKILAGT 558 (842)
Q Consensus 482 rlWD~~-g~~i~~l~gH~~~V~sla~--dg~~l~S~S~DgtIrvWd~~~~~~~d~~l~~~l~~r~~~y~~~~~~~i~~~t 558 (842)
||||.. |+++.+|+||-++|+.+++ |.+.|+|+|.|.|+|+|++++..-..++.. ..+ .||...
T Consensus 392 kLW~g~tGk~lasfRGHv~~VYqvawsaDsRLlVS~SkDsTLKvw~V~tkKl~~DLpG-----h~D--------EVf~vD 458 (480)
T KOG0271|consen 392 KLWDGRTGKFLASFRGHVAAVYQVAWSADSRLLVSGSKDSTLKVWDVRTKKLKQDLPG-----HAD--------EVFAVD 458 (480)
T ss_pred eeeeCCCcchhhhhhhccceeEEEEeccCccEEEEcCCCceEEEEEeeeeeecccCCC-----CCc--------eEEEEE
Confidence 999986 9999999999999999996 777999999999999999987654444321 222 289999
Q ss_pred EEeCCCCC
Q 003171 559 WNVGQGRA 566 (842)
Q Consensus 559 wNv~~~~~ 566 (842)
|...+.+.
T Consensus 459 wspDG~rV 466 (480)
T KOG0271|consen 459 WSPDGQRV 466 (480)
T ss_pred ecCCCcee
Confidence 99887765
|
|
| >KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-33 Score=299.33 Aligned_cols=266 Identities=18% Similarity=0.201 Sum_probs=223.1
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecC--C-CEEEeeCCCcEEEE
Q 003171 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSY--G-DLWSGSEGGGIKIW 267 (842)
Q Consensus 191 ~~~V~~la~dpdg~~LaSGs~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~d--G-~L~SgS~DgtIrvW 267 (842)
+.||..+.|+.+++.|+|||.+|.+++|+..+. ..+.+|.||++.|.++.|+|. + .|+|||.||++|+|
T Consensus 175 ~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~--------~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw 246 (459)
T KOG0272|consen 175 TRPISGCSFSRDSKHLATGSWSGLVKVWSVPQC--------NLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLW 246 (459)
T ss_pred CCcceeeEeecCCCeEEEeecCCceeEeecCCc--------ceeEEEeccccceeeEEEccCCCccceeeeccCCceeee
Confidence 789999999999999999999999999999886 788999999999999999997 3 38999999999999
Q ss_pred eCCCccceeecCCCceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcCCCCEEEEeC-CCcEEEEEccCCcEEE
Q 003171 268 PWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLK 346 (842)
Q Consensus 268 d~~t~~~~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s-~~tI~lWD~~tg~~l~ 346 (842)
++++..... ++.+| ...|..+++.++|..+.+++ |.+-+|||++|+..+.
T Consensus 247 ~~~~e~~l~-------------------~l~gH----------~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL 297 (459)
T KOG0272|consen 247 KLSQETPLQ-------------------DLEGH----------LARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELL 297 (459)
T ss_pred ccCCCcchh-------------------hhhcc----------hhhheeeeecCCCceeeecccccchhhcccccchhhH
Confidence 997633222 22233 22456688899999999988 5789999999998766
Q ss_pred EeecCCceEeeeecccCCCcccccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEee--cC----ccccCCC
Q 003171 347 VFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAA--KG----GFGDDNR 420 (842)
Q Consensus 347 ~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~--~g----~~~~~~~ 420 (842)
...+|...+ -++.|.+++..+.+|..|..-|+|. +| .|.+|.+
T Consensus 298 ~QEGHs~~v-------------------------------~~iaf~~DGSL~~tGGlD~~~RvWDlRtgr~im~L~gH~k 346 (459)
T KOG0272|consen 298 LQEGHSKGV-------------------------------FSIAFQPDGSLAATGGLDSLGRVWDLRTGRCIMFLAGHIK 346 (459)
T ss_pred hhccccccc-------------------------------ceeEecCCCceeeccCccchhheeecccCcEEEEeccccc
Confidence 655654322 1345666666667777777777776 33 3567999
Q ss_pred ceEEEEECCCCc-EEEEeCCCeEEEEcCC-CCeeeeeecCCccEEEEEe---cCCEEEEEecCcEEEEEeCC-Ccccccc
Q 003171 421 RTEALTTSIDGM-IWTGGANGLLLQWDPN-GNRLQDFQYLPFAVQCLCT---FGSQIWVGYMNGIVQVLDLE-GNLLGGW 494 (842)
Q Consensus 421 ~v~al~~s~dg~-l~Sgs~DgtIrlWD~~-g~~l~~l~~H~~~V~sls~---dG~~LasGs~DgtIrlWD~~-g~~i~~l 494 (842)
.|.+++|||+|+ |+|||.|+++|+||+. .+++.++.+|++-|..+.+ .|.+|++++.|++++||... +.+++++
T Consensus 347 ~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~~ksL 426 (459)
T KOG0272|consen 347 EILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTIPAHSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTWSPLKSL 426 (459)
T ss_pred ceeeEeECCCceEEeecCCCCcEEEeeecccccceecccccchhhheEecccCCeEEEEcccCcceeeecCCCcccchhh
Confidence 999999999999 8999999999999995 5779999999999998865 47899999999999999987 7899999
Q ss_pred cccccCEEEEE--eCCCEEEEEcCCCCeeecc
Q 003171 495 VAHSSPVIKMA--VGAGYIFTLANHGGIRGWN 524 (842)
Q Consensus 495 ~gH~~~V~sla--~dg~~l~S~S~DgtIrvWd 524 (842)
.||.+.|.++. .|++.++|+|.|.|+|+|.
T Consensus 427 aGHe~kV~s~Dis~d~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 427 AGHEGKVISLDISPDSQAIATSSFDRTIKLWR 458 (459)
T ss_pred cCCccceEEEEeccCCceEEEeccCceeeecc
Confidence 99999999987 6899999999999999996
|
|
| >KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-33 Score=284.74 Aligned_cols=268 Identities=22% Similarity=0.355 Sum_probs=207.7
Q ss_pred eEEEEecCCEEEEe-cCCCEEEEeCCCCccccccccccccCCCCCCCCCCeeeeeecCCCeEEEEEcCCCCEEEEEeCCC
Q 003171 135 LRTIVCTEEQLWAG-GENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGHRDG 213 (842)
Q Consensus 135 ~~~l~~~~~~l~~~-~D~~vrvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~V~~la~dpdg~~LaSGs~DG 213 (842)
++++..+...+..| -|++|+|||..+.+.... -.+| +++|+|+.++. +.|+|||.|.
T Consensus 200 VYClQYDD~kiVSGlrDnTikiWD~n~~~c~~~-------------------L~GH-tGSVLCLqyd~--rviisGSSDs 257 (499)
T KOG0281|consen 200 VYCLQYDDEKIVSGLRDNTIKIWDKNSLECLKI-------------------LTGH-TGSVLCLQYDE--RVIVSGSSDS 257 (499)
T ss_pred eEEEEecchhhhcccccCceEEeccccHHHHHh-------------------hhcC-CCcEEeeeccc--eEEEecCCCc
Confidence 33444445455554 499999999987554321 2244 89999999975 7999999999
Q ss_pred cEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCCCEEEeeCCCcEEEEeCCCccceeecCCCceeeeEEEEeec
Q 003171 214 RIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGDLWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERS 293 (842)
Q Consensus 214 tIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~L~SgS~DgtIrvWd~~t~~~~l~~~~~~~~~~~l~~~~s 293 (842)
|||+||.++| +++.++.+|..+|..+.|+. |.++|+|.|.+|+|||+..... .++..
T Consensus 258 TvrvWDv~tg--------e~l~tlihHceaVLhlrf~n-g~mvtcSkDrsiaVWdm~sps~-it~rr------------- 314 (499)
T KOG0281|consen 258 TVRVWDVNTG--------EPLNTLIHHCEAVLHLRFSN-GYMVTCSKDRSIAVWDMASPTD-ITLRR------------- 314 (499)
T ss_pred eEEEEeccCC--------chhhHHhhhcceeEEEEEeC-CEEEEecCCceeEEEeccCchH-HHHHH-------------
Confidence 9999999998 77888999999999999986 7899999999999999965321 11100
Q ss_pred eeecccceeccceeeeecCCEEEEEEcCCCCEEEEe-CCCcEEEEEccCCcEEEEeecCCceEeeeecccCCCcccccce
Q 003171 294 YIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSA-GFLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEF 372 (842)
Q Consensus 294 ~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~-s~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~ 372 (842)
.+.|| -..|..+-++ ...+.++ +|.||++|++.|+++++++.+|..-
T Consensus 315 --VLvGH----------rAaVNvVdfd--~kyIVsASgDRTikvW~~st~efvRtl~gHkRG------------------ 362 (499)
T KOG0281|consen 315 --VLVGH----------RAAVNVVDFD--DKYIVSASGDRTIKVWSTSTCEFVRTLNGHKRG------------------ 362 (499)
T ss_pred --HHhhh----------hhheeeeccc--cceEEEecCCceEEEEeccceeeehhhhccccc------------------
Confidence 12223 1234444443 2344554 4789999999999999888665311
Q ss_pred EEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEeecCccccCCCceEEEEECCCCc-EEEEeCCCeEEEEcC-CCC
Q 003171 373 KTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGM-IWTGGANGLLLQWDP-NGN 450 (842)
Q Consensus 373 ~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~al~~s~dg~-l~Sgs~DgtIrlWD~-~g~ 450 (842)
+. ++. -.|+ ++|||.|.|||+||+ .|.
T Consensus 363 ---------------------------------IA----------------ClQ--Yr~rlvVSGSSDntIRlwdi~~G~ 391 (499)
T KOG0281|consen 363 ---------------------------------IA----------------CLQ--YRDRLVVSGSSDNTIRLWDIECGA 391 (499)
T ss_pred ---------------------------------ce----------------ehh--ccCeEEEecCCCceEEEEeccccH
Confidence 00 000 1234 789999999999999 799
Q ss_pred eeeeeecCCccEEEEEecCCEEEEEecCcEEEEEeCC-C---------cccccccccccCEEEEEeCCCEEEEEcCCCCe
Q 003171 451 RLQDFQYLPFAVQCLCTFGSQIWVGYMNGIVQVLDLE-G---------NLLGGWVAHSSPVIKMAVGAGYIFTLANHGGI 520 (842)
Q Consensus 451 ~l~~l~~H~~~V~sls~dG~~LasGs~DgtIrlWD~~-g---------~~i~~l~gH~~~V~sla~dg~~l~S~S~DgtI 520 (842)
|++.++||..-|.|+.+|.++|++|..||+|+|||+. + -|+.++..|++.|..+.+|.-.+++.+.|.+|
T Consensus 392 cLRvLeGHEeLvRciRFd~krIVSGaYDGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQFD~fqIvsssHddtI 471 (499)
T KOG0281|consen 392 CLRVLEGHEELVRCIRFDNKRIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQFDEFQIISSSHDDTI 471 (499)
T ss_pred HHHHHhchHHhhhheeecCceeeeccccceEEEEecccccCCcccccchHHHhhhhccceeEEEeecceEEEeccCCCeE
Confidence 9999999999999999999999999999999999964 2 16888999999999999999999999999999
Q ss_pred eeccccCCCC
Q 003171 521 RGWNVTSPGP 530 (842)
Q Consensus 521 rvWd~~~~~~ 530 (842)
-+||+-...|
T Consensus 472 LiWdFl~~~~ 481 (499)
T KOG0281|consen 472 LIWDFLNGPP 481 (499)
T ss_pred EEEEcCCCCc
Confidence 9999866444
|
|
| >KOG0295 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.8e-30 Score=266.07 Aligned_cols=267 Identities=18% Similarity=0.208 Sum_probs=212.1
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCCC-EEEeeCCCcEEEEeC
Q 003171 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPW 269 (842)
Q Consensus 191 ~~~V~~la~dpdg~~LaSGs~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~ 269 (842)
..+|..+.+.|+--++++++.|++|++||..++ +....++||+++|.+|+|+..|+ |+|+|.|-.+++||.
T Consensus 108 r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg--------~~e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~ 179 (406)
T KOG0295|consen 108 RSSVTRVIFHPSEALVVSASEDATIKVFDTETG--------ELERSLRGHTDSVFDISFDASGKYLATCSSDLSAKLWDF 179 (406)
T ss_pred ccceeeeeeccCceEEEEecCCceEEEEEccch--------hhhhhhhccccceeEEEEecCccEEEecCCccchhheeH
Confidence 779999999999999999999999999999998 56788999999999999999998 789999999999999
Q ss_pred CCcccee-ecCCCceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcCCCCEEEEeC-CCcEEEEEccCCcEEEE
Q 003171 270 EAIEKAL-SLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKV 347 (842)
Q Consensus 270 ~t~~~~l-~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s-~~tI~lWD~~tg~~l~~ 347 (842)
++...++ .... | .-.+.++++-+.+..|.|++ |.+|+.|+..||.|+++
T Consensus 180 ~~~~~c~ks~~g-------------------h----------~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t 230 (406)
T KOG0295|consen 180 DTFFRCIKSLIG-------------------H----------EHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVKT 230 (406)
T ss_pred HHHHHHHHHhcC-------------------c----------ccceeeEEEEecCCeeeecccccceeEEecccceeEEe
Confidence 7632221 1111 1 12344566666677888877 68999999999999999
Q ss_pred eecCCceEeeeecccCCCcccccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEee------cCccccCCCc
Q 003171 348 FNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAA------KGGFGDDNRR 421 (842)
Q Consensus 348 l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~------~g~~~~~~~~ 421 (842)
|.+|.+++..+....+ +.....+..+-..++|. +..+.+|...
T Consensus 231 ~~~h~ewvr~v~v~~D-------------------------------Gti~As~s~dqtl~vW~~~t~~~k~~lR~hEh~ 279 (406)
T KOG0295|consen 231 FPGHSEWVRMVRVNQD-------------------------------GTIIASCSNDQTLRVWVVATKQCKAELREHEHP 279 (406)
T ss_pred ccCchHhEEEEEecCC-------------------------------eeEEEecCCCceEEEEEeccchhhhhhhccccc
Confidence 9999886543332221 11112223333344443 2345567777
Q ss_pred eEEEEECCC---------------Cc-EEEEeCCCeEEEEcC-CCCeeeeeecCCccEEEEEec--CCEEEEEecCcEEE
Q 003171 422 TEALTTSID---------------GM-IWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQCLCTF--GSQIWVGYMNGIVQ 482 (842)
Q Consensus 422 v~al~~s~d---------------g~-l~Sgs~DgtIrlWD~-~g~~l~~l~~H~~~V~sls~d--G~~LasGs~DgtIr 482 (842)
|+++++.|. ++ +.++|.|++||+||+ +|.|+-++.+|.++|..+++. |+||+|+..|++++
T Consensus 280 vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL~ghdnwVr~~af~p~Gkyi~ScaDDktlr 359 (406)
T KOG0295|consen 280 VECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTLVGHDNWVRGVAFSPGGKYILSCADDKTLR 359 (406)
T ss_pred eEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEEEEecccceeeeeEEcCCCeEEEEEecCCcEE
Confidence 777776552 23 789999999999999 899999999999999998775 99999999999999
Q ss_pred EEeCC-CcccccccccccCEEEEEeC--CCEEEEEcCCCCeeeccc
Q 003171 483 VLDLE-GNLLGGWVAHSSPVIKMAVG--AGYIFTLANHGGIRGWNV 525 (842)
Q Consensus 483 lWD~~-g~~i~~l~gH~~~V~sla~d--g~~l~S~S~DgtIrvWd~ 525 (842)
+||++ ++|..++.+|...|+++.++ .-+++|||-|.++++|..
T Consensus 360 vwdl~~~~cmk~~~ah~hfvt~lDfh~~~p~VvTGsVdqt~KvwEc 405 (406)
T KOG0295|consen 360 VWDLKNLQCMKTLEAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWEC 405 (406)
T ss_pred EEEeccceeeeccCCCcceeEEEecCCCCceEEeccccceeeeeec
Confidence 99997 78999999999999999964 348999999999999963
|
|
| >KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.8e-31 Score=275.14 Aligned_cols=231 Identities=19% Similarity=0.273 Sum_probs=185.1
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCCCEEEeeCCCcEEEEeCC
Q 003171 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGDLWSGSEGGGIKIWPWE 270 (842)
Q Consensus 191 ~~~V~~la~dpdg~~LaSGs~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~L~SgS~DgtIrvWd~~ 270 (842)
...|+|+.+|. +.++||..|.||++||..+- .+...|.||++.|.|+.|..- -|+|||.|.||||||++
T Consensus 197 skgVYClQYDD--~kiVSGlrDnTikiWD~n~~--------~c~~~L~GHtGSVLCLqyd~r-viisGSSDsTvrvWDv~ 265 (499)
T KOG0281|consen 197 SKGVYCLQYDD--EKIVSGLRDNTIKIWDKNSL--------ECLKILTGHTGSVLCLQYDER-VIVSGSSDSTVRVWDVN 265 (499)
T ss_pred CCceEEEEecc--hhhhcccccCceEEeccccH--------HHHHhhhcCCCcEEeeeccce-EEEecCCCceEEEEecc
Confidence 44799999974 67899999999999999875 667789999999999998652 37899999999999999
Q ss_pred CccceeecCCCceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcCCCCEEEEeCCCcEEEEEccCCcEEEEeec
Q 003171 271 AIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGFLSFALWDARTRELLKVFNI 350 (842)
Q Consensus 271 t~~~~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s~~tI~lWD~~tg~~l~~l~~ 350 (842)
+++...++..+ ...|..+.++ .+-.|.|+.|.+|++||+.+-.-+
T Consensus 266 tge~l~tlihH-----------------------------ceaVLhlrf~-ng~mvtcSkDrsiaVWdm~sps~i----- 310 (499)
T KOG0281|consen 266 TGEPLNTLIHH-----------------------------CEAVLHLRFS-NGYMVTCSKDRSIAVWDMASPTDI----- 310 (499)
T ss_pred CCchhhHHhhh-----------------------------cceeEEEEEe-CCEEEEecCCceeEEEeccCchHH-----
Confidence 98764433221 2234445554 355555566889999998542100
Q ss_pred CCceEeeeecccCCCcccccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEeecCccccCCCceEEEEECCC
Q 003171 351 DGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSID 430 (842)
Q Consensus 351 ~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~al~~s~d 430 (842)
. -+.+ +.+|...|..+.|+ +
T Consensus 311 --------------------t-----------------------~rrV----------------LvGHrAaVNvVdfd-~ 330 (499)
T KOG0281|consen 311 --------------------T-----------------------LRRV----------------LVGHRAAVNVVDFD-D 330 (499)
T ss_pred --------------------H-----------------------HHHH----------------Hhhhhhheeeeccc-c
Confidence 0 0011 22333444444453 3
Q ss_pred CcEEEEeCCCeEEEEcC-CCCeeeeeecCCccEEEEEecCCEEEEEecCcEEEEEeCC-CcccccccccccCEEEEEeCC
Q 003171 431 GMIWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQCLCTFGSQIWVGYMNGIVQVLDLE-GNLLGGWVAHSSPVIKMAVGA 508 (842)
Q Consensus 431 g~l~Sgs~DgtIrlWD~-~g~~l~~l~~H~~~V~sls~dG~~LasGs~DgtIrlWD~~-g~~i~~l~gH~~~V~sla~dg 508 (842)
..++|+|.|.|||+|++ ++++++++.+|...|-|+...|+++++||+|.||||||.+ |.|++.+.||.+-|.+|.+|.
T Consensus 331 kyIVsASgDRTikvW~~st~efvRtl~gHkRGIAClQYr~rlvVSGSSDntIRlwdi~~G~cLRvLeGHEeLvRciRFd~ 410 (499)
T KOG0281|consen 331 KYIVSASGDRTIKVWSTSTCEFVRTLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDN 410 (499)
T ss_pred ceEEEecCCceEEEEeccceeeehhhhcccccceehhccCeEEEecCCCceEEEEeccccHHHHHHhchHHhhhheeecC
Confidence 36899999999999999 7999999999999999999999999999999999999998 999999999999999999999
Q ss_pred CEEEEEcCCCCeeeccccC
Q 003171 509 GYIFTLANHGGIRGWNVTS 527 (842)
Q Consensus 509 ~~l~S~S~DgtIrvWd~~~ 527 (842)
+.++||+.||+||+||+..
T Consensus 411 krIVSGaYDGkikvWdl~a 429 (499)
T KOG0281|consen 411 KRIVSGAYDGKIKVWDLQA 429 (499)
T ss_pred ceeeeccccceEEEEeccc
Confidence 9999999999999999754
|
|
| >KOG0286 consensus G-protein beta subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.5e-28 Score=249.65 Aligned_cols=268 Identities=17% Similarity=0.226 Sum_probs=215.0
Q ss_pred EecCCEEEE-ecCCCEEEEeCCCCccccccccccccCCCCCCCCCCeeeeeecCCCeEEEEEcCCCCEEEEEeCCCcEEE
Q 003171 139 VCTEEQLWA-GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGHRDGRIMC 217 (842)
Q Consensus 139 ~~~~~~l~~-~~D~~vrvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~V~~la~dpdg~~LaSGs~DGtIrl 217 (842)
+.+.+.+.. ++|+.+-|||.-+.... .+-| +. ..+|+.+||+|.|+.+|.|+-|...-|
T Consensus 64 s~Dsr~ivSaSqDGklIvWDs~TtnK~---------------haip----l~-s~WVMtCA~sPSg~~VAcGGLdN~Csi 123 (343)
T KOG0286|consen 64 STDSRRIVSASQDGKLIVWDSFTTNKV---------------HAIP----LP-SSWVMTCAYSPSGNFVACGGLDNKCSI 123 (343)
T ss_pred cCCcCeEEeeccCCeEEEEEcccccce---------------eEEe----cC-ceeEEEEEECCCCCeEEecCcCceeEE
Confidence 344555554 78999999998664321 1112 33 679999999999999999999999999
Q ss_pred EECCCCccCCCCCcceeEEecccCCcEEEEEEecCCCEEEeeCCCcEEEEeCCCccceeecCCCceeeeEEEEeeceeec
Q 003171 218 WKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGDLWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDL 297 (842)
Q Consensus 218 Wdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~L~SgS~DgtIrvWd~~t~~~~l~~~~~~~~~~~l~~~~s~~~l 297 (842)
+++.+.. .+...+..+.+.||++.+.+..|.+|++|+|||.|.|.-+||+++++....+.
T Consensus 124 y~ls~~d--~~g~~~v~r~l~gHtgylScC~f~dD~~ilT~SGD~TCalWDie~g~~~~~f~------------------ 183 (343)
T KOG0286|consen 124 YPLSTRD--AEGNVRVSRELAGHTGYLSCCRFLDDNHILTGSGDMTCALWDIETGQQTQVFH------------------ 183 (343)
T ss_pred Eeccccc--ccccceeeeeecCccceeEEEEEcCCCceEecCCCceEEEEEcccceEEEEec------------------
Confidence 9998641 11222345678999999999999999999999999999999999876544433
Q ss_pred ccceeccceeeeecCCEEEEEEcC-CCCEEEEeC-CCcEEEEEccCCcEEEEeecCCceEeeeecccCCCcccccceEEE
Q 003171 298 RSHLSVNGFSSILTSDIKNLLSDH-SRAKVWSAG-FLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTK 375 (842)
Q Consensus 298 ~~~~~~~~~~~~~s~~v~~las~~-~~~~v~s~s-~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~ 375 (842)
+| ..+|..|...+ ++..+.+++ |++.+|||++.+.+.++|.+|..
T Consensus 184 -GH----------~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghes---------------------- 230 (343)
T KOG0286|consen 184 -GH----------TGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHES---------------------- 230 (343)
T ss_pred -CC----------cccEEEEecCCCCCCeEEecccccceeeeeccCcceeEeeccccc----------------------
Confidence 23 56788888877 666777777 78999999999999888766532
Q ss_pred EEecCCCCccceeeeEeecCcceEEecCCcEEEEeecCccccCCCceEEEEECCCCc-EEEEeCCCeEEEEcC-CCCeee
Q 003171 376 IVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGM-IWTGGANGLLLQWDP-NGNRLQ 453 (842)
Q Consensus 376 ~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~al~~s~dg~-l~Sgs~DgtIrlWD~-~g~~l~ 453 (842)
.|.+|.|-|+|. +++||.|++.|++|+ ..+.+.
T Consensus 231 ---------------------------------------------DINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a 265 (343)
T KOG0286|consen 231 ---------------------------------------------DINSVRFFPSGDAFATGSDDATCRLYDLRADQELA 265 (343)
T ss_pred ---------------------------------------------ccceEEEccCCCeeeecCCCceeEEEeecCCcEEe
Confidence 234555667777 899999999999999 677888
Q ss_pred eeec--CCccEEEEEe--cCCEEEEEecCcEEEEEeC-CCcccccccccccCEEEEE--eCCCEEEEEcCCCCeeecc
Q 003171 454 DFQY--LPFAVQCLCT--FGSQIWVGYMNGIVQVLDL-EGNLLGGWVAHSSPVIKMA--VGAGYIFTLANHGGIRGWN 524 (842)
Q Consensus 454 ~l~~--H~~~V~sls~--dG~~LasGs~DgtIrlWD~-~g~~i~~l~gH~~~V~sla--~dg~~l~S~S~DgtIrvWd 524 (842)
.|.. -..+|+++++ .|++|.+|+.|.++.+||. +++.+..|.||.+.|.+|. +||.-++|||+|.++|||.
T Consensus 266 ~ys~~~~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~e~vg~L~GHeNRvScl~~s~DG~av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 266 VYSHDSIICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKGERVGVLAGHENRVSCLGVSPDGMAVATGSWDSTLRIWA 343 (343)
T ss_pred eeccCcccCCceeEEEcccccEEEeeecCCceeEeeccccceEEEeeccCCeeEEEEECCCCcEEEecchhHheeecC
Confidence 8763 2347888865 6999999999999999995 6889999999999999986 7999999999999999994
|
|
| >KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription] | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.8e-29 Score=283.93 Aligned_cols=242 Identities=19% Similarity=0.341 Sum_probs=196.9
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCc------------c-----------CCCCCcceeEEecccCCcEEEE
Q 003171 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARL------------L-----------DSDDGFGEVLSWQAHRGPVLSL 247 (842)
Q Consensus 191 ~~~V~~la~dpdg~~LaSGs~DGtIrlWdl~~g~------------~-----------~~~~~~~~~~~l~gH~~~V~sl 247 (842)
...|.|..|++|+.+||.|-.|-.|++|.+.... . .+...-....++.||++||.++
T Consensus 378 ~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH~GPVyg~ 457 (707)
T KOG0263|consen 378 YQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGHSGPVYGC 457 (707)
T ss_pred CCcceeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeecCCCceeee
Confidence 5579999999999999999999999999987411 0 1112223345689999999999
Q ss_pred EEecCCC-EEEeeCCCcEEEEeCCCccceeecCCCceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcCCCCEE
Q 003171 248 CISSYGD-LWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKV 326 (842)
Q Consensus 248 afs~dG~-L~SgS~DgtIrvWd~~t~~~~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v 326 (842)
.|+|+.+ |+|+|+|++||+|.+.+..+.+.+. || ...|-.+.++|-|..+
T Consensus 458 sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~-------------------GH----------~~PVwdV~F~P~GyYF 508 (707)
T KOG0263|consen 458 SFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYK-------------------GH----------LAPVWDVQFAPRGYYF 508 (707)
T ss_pred eecccccceeeccCCcceeeeecccceeEEEec-------------------CC----------CcceeeEEecCCceEE
Confidence 9999998 7899999999999998765443332 23 2234455677778888
Q ss_pred EEeC-CCcEEEEEccCCcEEEEeecCCceEeeeecccCCCcccccceEEEEEecCCCCccceeeeEeecCcceEEecCCc
Q 003171 327 WSAG-FLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADA 405 (842)
Q Consensus 327 ~s~s-~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~ 405 (842)
++++ |+|.++|....-++++.
T Consensus 509 atas~D~tArLWs~d~~~PlRi---------------------------------------------------------- 530 (707)
T KOG0263|consen 509 ATASHDQTARLWSTDHNKPLRI---------------------------------------------------------- 530 (707)
T ss_pred EecCCCceeeeeecccCCchhh----------------------------------------------------------
Confidence 8877 57899998765443333
Q ss_pred EEEEeecCccccCCCceEEEEECCCCc-EEEEeCCCeEEEEcC-CCCeeeeeecCCccEEEEE--ecCCEEEEEecCcEE
Q 003171 406 VRRVAAKGGFGDDNRRTEALTTSIDGM-IWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQCLC--TFGSQIWVGYMNGIV 481 (842)
Q Consensus 406 v~~v~~~g~~~~~~~~v~al~~s~dg~-l~Sgs~DgtIrlWD~-~g~~l~~l~~H~~~V~sls--~dG~~LasGs~DgtI 481 (842)
|.+|...|.++.|.|+.. +++||.|.+||+||+ +|.+++.|.||..+|.+++ ++|++|++|+.||.|
T Consensus 531 ---------faghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed~~I 601 (707)
T KOG0263|consen 531 ---------FAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYLASGDEDGLI 601 (707)
T ss_pred ---------hcccccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceEeecccCCcE
Confidence 334455566778888876 899999999999999 8999999999999999885 689999999999999
Q ss_pred EEEeCC-CcccccccccccCEEEEEe--CCCEEEEEcCCCCeeeccccCC
Q 003171 482 QVLDLE-GNLLGGWVAHSSPVIKMAV--GAGYIFTLANHGGIRGWNVTSP 528 (842)
Q Consensus 482 rlWD~~-g~~i~~l~gH~~~V~sla~--dg~~l~S~S~DgtIrvWd~~~~ 528 (842)
+|||+. |+++..+.+|++.|.+|.+ ||..|+++|.|++|++||+...
T Consensus 602 ~iWDl~~~~~v~~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~ 651 (707)
T KOG0263|consen 602 KIWDLANGSLVKQLKGHTGTIYSLSFSRDGNVLASGGADNSVRLWDLTKV 651 (707)
T ss_pred EEEEcCCCcchhhhhcccCceeEEEEecCCCEEEecCCCCeEEEEEchhh
Confidence 999997 7899999999999999985 8999999999999999998654
|
|
| >KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.3e-29 Score=278.02 Aligned_cols=362 Identities=18% Similarity=0.185 Sum_probs=250.8
Q ss_pred eEEEEecCC-EEEE--ecCCCEEEEeCCCCccccccccccccCCCCCCCCCCeeeeeecCCCeEEEEEcCCC--CEEEEE
Q 003171 135 LRTIVCTEE-QLWA--GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEAS--GVVWSG 209 (842)
Q Consensus 135 ~~~l~~~~~-~l~~--~~D~~vrvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~V~~la~dpdg--~~LaSG 209 (842)
+-.+++++. .|.+ |.|+.|+|||+...+... .|++ + .+.|.++.|.|+- .+|++|
T Consensus 108 vi~ma~~~~g~LlAtggaD~~v~VWdi~~~~~th-----------------~fkG--~-gGvVssl~F~~~~~~~lL~sg 167 (775)
T KOG0319|consen 108 VITMAFDPTGTLLATGGADGRVKVWDIKNGYCTH-----------------SFKG--H-GGVVSSLLFHPHWNRWLLASG 167 (775)
T ss_pred eEEEEEcCCCceEEeccccceEEEEEeeCCEEEE-----------------EecC--C-CceEEEEEeCCccchhheeec
Confidence 445666544 5555 679999999998755321 1322 2 7789999999865 469999
Q ss_pred eCCCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCCC-EEEeeCCCcEEEEeCCCccceeecCCCceeeeE-
Q 003171 210 HRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEKALSLKPEERHTAA- 287 (842)
Q Consensus 210 s~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~~t~~~~l~~~~~~~~~~~- 287 (842)
..|+++|+||+.... .+..++++|...|++++|++|+. ++|++.|+.|.|||+...++...+. ....+++
T Consensus 168 ~~D~~v~vwnl~~~~-------tcl~~~~~H~S~vtsL~~~~d~~~~ls~~RDkvi~vwd~~~~~~l~~lp-~ye~~E~v 239 (775)
T KOG0319|consen 168 ATDGTVRVWNLNDKR-------TCLHTMILHKSAVTSLAFSEDSLELLSVGRDKVIIVWDLVQYKKLKTLP-LYESLESV 239 (775)
T ss_pred CCCceEEEEEcccCc-------hHHHHHHhhhhheeeeeeccCCceEEEeccCcEEEEeehhhhhhhheec-hhhheeeE
Confidence 999999999998752 46788999999999999999997 8999999999999985422111100 0000000
Q ss_pred -----------------------------------------------------------EEEeecee--ecc--------
Q 003171 288 -----------------------------------------------------------LIVERSYI--DLR-------- 298 (842)
Q Consensus 288 -----------------------------------------------------------l~~~~s~~--~l~-------- 298 (842)
+..+..++ +.+
T Consensus 240 v~l~~~~~~~~~~~~TaG~~g~~~~~d~es~~~~~~~~~~~~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l~i~k~i 319 (775)
T KOG0319|consen 240 VRLREELGGKGEYIITAGGSGVVQYWDSESGKCVYKQRQSDSEEIDHLLAIESMSQLLLVTAEQNLFLYDEDELTIVKQI 319 (775)
T ss_pred EEechhcCCcceEEEEecCCceEEEEecccchhhhhhccCCchhhhcceeccccCceEEEEccceEEEEEccccEEehhh
Confidence 00000000 000
Q ss_pred -c-ceeccce----------------------------eee---ecCCEEEEEEcCCCCEEEEeC-CCcEEEEEccCCc-
Q 003171 299 -S-HLSVNGF----------------------------SSI---LTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRE- 343 (842)
Q Consensus 299 -~-~~~~~~~----------------------------~~~---~s~~v~~las~~~~~~v~s~s-~~tI~lWD~~tg~- 343 (842)
| +..+..+ |++ ++.-+.+|.....|..+++++ |+++++|-+..+.
T Consensus 320 vG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~ii~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~ 399 (775)
T KOG0319|consen 320 VGYNDEILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQIIPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCS 399 (775)
T ss_pred cCCchhheeeeecCCccceEEEEeCCCceEEEecCCCceEEEeCchhheeeeeecccCcEEEEecCCceEEEEEecCCcc
Confidence 0 0000000 110 122244555445566788877 7899999764332
Q ss_pred ---EEEEeecCCceEeeeecccCC-----CcccccceEEEEEecC----------------CCCccceeeeEeecCcceE
Q 003171 344 ---LLKVFNIDGQIENRVDMSLLP-----DFAMEDEFKTKIVTSS----------------KKDKAQSSFGFFQRSRNAI 399 (842)
Q Consensus 344 ---~l~~l~~~~~~~~~~~~s~~~-----~~~~~~~~~~~~~s~~----------------~~~~~~~s~~~~~~~~~~~ 399 (842)
++....+|...+..+.++... ..+-|..+|+|....+ ..+|.++++...++.....
T Consensus 400 ~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiA 479 (775)
T KOG0319|consen 400 KSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIA 479 (775)
T ss_pred hhhhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCCceEE
Confidence 233334554433333332211 1112333443332221 1355566788888888888
Q ss_pred EecCCcEEEEee------cCccccCCCceEEEEECCCCc-EEEEeCCCeEEEEcC-CCCeeeeeecCCccEEEEEe--cC
Q 003171 400 MGAADAVRRVAA------KGGFGDDNRRTEALTTSIDGM-IWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQCLCT--FG 469 (842)
Q Consensus 400 ~g~~~~v~~v~~------~g~~~~~~~~v~al~~s~dg~-l~Sgs~DgtIrlWD~-~g~~l~~l~~H~~~V~sls~--dG 469 (842)
+|+.|-...+|. .|++.+|.+.|.++.|++..+ ++|+|.|+|||+|.+ +..|+++|.||+++|.-.++ +|
T Consensus 480 T~SqDktaKiW~le~~~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSClkT~eGH~~aVlra~F~~~~ 559 (775)
T KOG0319|consen 480 TGSQDKTAKIWDLEQLRLLGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCLKTFEGHTSAVLRASFIRNG 559 (775)
T ss_pred ecccccceeeecccCceEEEEeeCCccceEEEEeccccceeEeccCCceEEEEEeccceeeeeecCccceeEeeeeeeCC
Confidence 899988777775 467889999999999999887 799999999999999 89999999999999997665 79
Q ss_pred CEEEEEecCcEEEEEeCC-CcccccccccccCEEEEE--eCCCEEEEEcCCCCeeecc
Q 003171 470 SQIWVGYMNGIVQVLDLE-GNLLGGWVAHSSPVIKMA--VGAGYIFTLANHGGIRGWN 524 (842)
Q Consensus 470 ~~LasGs~DgtIrlWD~~-g~~i~~l~gH~~~V~sla--~dg~~l~S~S~DgtIrvWd 524 (842)
++|+|+++||-|+||+.+ +.|+.++.+|++.||+++ +....++||+.|+.|-+|.
T Consensus 560 ~qliS~~adGliKlWnikt~eC~~tlD~H~DrvWaL~~~~~~~~~~tgg~Dg~i~~wk 617 (775)
T KOG0319|consen 560 KQLISAGADGLIKLWNIKTNECEMTLDAHNDRVWALSVSPLLDMFVTGGGDGRIIFWK 617 (775)
T ss_pred cEEEeccCCCcEEEEeccchhhhhhhhhccceeEEEeecCccceeEecCCCeEEEEee
Confidence 999999999999999998 679999999999999998 4566889999999999996
|
|
| >KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.5e-28 Score=244.52 Aligned_cols=261 Identities=20% Similarity=0.262 Sum_probs=194.9
Q ss_pred ecCCCEEEEeCCCCccccccccccccCCCCCCCCCCeeeeeecCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCC
Q 003171 148 GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDS 227 (842)
Q Consensus 148 ~~D~~vrvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~V~~la~dpdg~~LaSGs~DGtIrlWdl~~g~~~~ 227 (842)
+.|.++-+|++..-... .| .....|++ | .--|..+++++||++..|||.|+++|+||+.++
T Consensus 35 srDk~ii~W~L~~dd~~-----------~G-~~~r~~~G--H-sH~v~dv~~s~dg~~alS~swD~~lrlWDl~~g---- 95 (315)
T KOG0279|consen 35 SRDKTIIVWKLTSDDIK-----------YG-VPVRRLTG--H-SHFVSDVVLSSDGNFALSASWDGTLRLWDLATG---- 95 (315)
T ss_pred ccceEEEEEEeccCccc-----------cC-ceeeeeec--c-ceEecceEEccCCceEEeccccceEEEEEecCC----
Confidence 56999999999532110 00 00111222 2 447889999999999999999999999999998
Q ss_pred CCCcceeEEecccCCcEEEEEEecCCC-EEEeeCCCcEEEEeCCCccceeecCCCceeeeEEEEeeceeecccceeccce
Q 003171 228 DDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGF 306 (842)
Q Consensus 228 ~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~~t~~~~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~ 306 (842)
+..+.|.||+.-|.+++|++|.+ ++|||.|+||++|++-+. +.++...+.
T Consensus 96 ----~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~-ck~t~~~~~------------------------ 146 (315)
T KOG0279|consen 96 ----ESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGV-CKYTIHEDS------------------------ 146 (315)
T ss_pred ----cEEEEEEecCCceEEEEecCCCceeecCCCcceeeeeeeccc-EEEEEecCC------------------------
Confidence 77889999999999999999986 899999999999998542 222221110
Q ss_pred eeeecCCEEEEEEcCC--CCEEEEeC-CCcEEEEEccCCcEEEEeecCCceEeeeecccCCCcccccceEEEEEecCCCC
Q 003171 307 SSILTSDIKNLLSDHS--RAKVWSAG-FLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKD 383 (842)
Q Consensus 307 ~~~~s~~v~~las~~~--~~~v~s~s-~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~ 383 (842)
...-|.|+.+.|. ...|.+++ |+++|+||+++.++...
T Consensus 147 ---~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~------------------------------------ 187 (315)
T KOG0279|consen 147 ---HREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTT------------------------------------ 187 (315)
T ss_pred ---CcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhc------------------------------------
Confidence 0234677888776 56788887 68999999987654322
Q ss_pred ccceeeeEeecCcceEEecCCcEEEEeecCccccCCCceEEEEECCCCc-EEEEeCCCeEEEEcC-CCCeeeeeecCCcc
Q 003171 384 KAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGM-IWTGGANGLLLQWDP-NGNRLQDFQYLPFA 461 (842)
Q Consensus 384 ~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~al~~s~dg~-l~Sgs~DgtIrlWD~-~g~~l~~l~~H~~~ 461 (842)
+.+|.+.+.++++||||. +++|+.||.+.|||+ +++++..+ .|...
T Consensus 188 -------------------------------~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~lysl-~a~~~ 235 (315)
T KOG0279|consen 188 -------------------------------FIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNLYSL-EAFDI 235 (315)
T ss_pred -------------------------------cccccccEEEEEECCCCCEEecCCCCceEEEEEccCCceeEec-cCCCe
Confidence 334566678899999998 689999999999999 79998887 57889
Q ss_pred EEEEEecCC-EEEEEecCcEEEEEeCCC-ccccccc----cc---ccCEEE--EEe--CCCEEEEEcCCCCeeeccccC
Q 003171 462 VQCLCTFGS-QIWVGYMNGIVQVLDLEG-NLLGGWV----AH---SSPVIK--MAV--GAGYIFTLANHGGIRGWNVTS 527 (842)
Q Consensus 462 V~sls~dG~-~LasGs~DgtIrlWD~~g-~~i~~l~----gH---~~~V~s--la~--dg~~l~S~S~DgtIrvWd~~~ 527 (842)
|+++++..+ +...+..+..|+|||++. .++..++ +. .+.+.| +++ ||+.|++|-+|+.||+|.+..
T Consensus 236 v~sl~fspnrywL~~at~~sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaws~dG~tLf~g~td~~irv~qv~~ 314 (315)
T KOG0279|consen 236 VNSLCFSPNRYWLCAATATSIKIWDLESKAVVEELKLDGIGPSSKAGDPICLSLAWSADGQTLFAGYTDNVIRVWQVAK 314 (315)
T ss_pred EeeEEecCCceeEeeccCCceEEEeccchhhhhhccccccccccccCCcEEEEEEEcCCCcEEEeeecCCcEEEEEeec
Confidence 999999766 434445577899999984 4444443 22 123444 454 799999999999999998753
|
|
| >KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.96 E-value=7.4e-28 Score=239.75 Aligned_cols=257 Identities=16% Similarity=0.230 Sum_probs=198.6
Q ss_pred ecCCCEEEEeCCCCccccccccccccCCCCCCCCCCeeeeeec-CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccC
Q 003171 148 GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKG-VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLD 226 (842)
Q Consensus 148 ~~D~~vrvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~~~V~~la~dpdg~~LaSGs~DGtIrlWdl~~g~~~ 226 (842)
|.|.+||+|...++.+.+. +.+ .+-|..|.+.|+++.||.|+. ..||++|+.++.
T Consensus 17 ~YDhTIRfWqa~tG~C~rT---------------------iqh~dsqVNrLeiTpdk~~LAaa~~-qhvRlyD~~S~n-- 72 (311)
T KOG0315|consen 17 GYDHTIRFWQALTGICSRT---------------------IQHPDSQVNRLEITPDKKDLAAAGN-QHVRLYDLNSNN-- 72 (311)
T ss_pred cCcceeeeeehhcCeEEEE---------------------EecCccceeeEEEcCCcchhhhccC-CeeEEEEccCCC--
Confidence 6799999999988654321 112 567999999999999999887 479999999863
Q ss_pred CCCCcceeEEecccCCcEEEEEEecCCC-EEEeeCCCcEEEEeCCCccceeecCCCceeeeEEEEeeceeecccceeccc
Q 003171 227 SDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNG 305 (842)
Q Consensus 227 ~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~~t~~~~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~ 305 (842)
+ ..+.++.+|++.|++|.|..||+ ++|||+||++||||+....+.-.+.
T Consensus 73 ---p-~Pv~t~e~h~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~-------------------------- 122 (311)
T KOG0315|consen 73 ---P-NPVATFEGHTKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQ-------------------------- 122 (311)
T ss_pred ---C-CceeEEeccCCceEEEEEeecCeEEEecCCCceEEEEeccCcccchhcc--------------------------
Confidence 1 47889999999999999999999 7999999999999996632211110
Q ss_pred eeeeecCCEEEEEEcCCCCEEEEeC-CCcEEEEEccCCcEEEEeecCCceEeeeecccCCCcccccceEEEEEecCCCCc
Q 003171 306 FSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDK 384 (842)
Q Consensus 306 ~~~~~s~~v~~las~~~~~~v~s~s-~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~ 384 (842)
....|..+...+....+.++. ++.|++||+.+..+...+-++
T Consensus 123 ----~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~liPe--------------------------------- 165 (311)
T KOG0315|consen 123 ----HNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHELIPE--------------------------------- 165 (311)
T ss_pred ----CCCCcceEEecCCcceEEeecCCCcEEEEEccCCccccccCCC---------------------------------
Confidence 123466677767666666665 578999999876553322111
Q ss_pred cceeeeEeecCcceEEecCCcEEEEeecCccccCCCceEEEEECCCCc-EEEEeCCCeEEEEcC-CC------Ceeeeee
Q 003171 385 AQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGM-IWTGGANGLLLQWDP-NG------NRLQDFQ 456 (842)
Q Consensus 385 ~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~al~~s~dg~-l~Sgs~DgtIrlWD~-~g------~~l~~l~ 456 (842)
..-.|.++.+.|||. ++.+..-|+..+|++ ++ +.+..|+
T Consensus 166 ---------------------------------~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ 212 (311)
T KOG0315|consen 166 ---------------------------------DDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQ 212 (311)
T ss_pred ---------------------------------CCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhhee
Confidence 112345677788998 455556789999998 43 3566788
Q ss_pred cCCccEEE--EEecCCEEEEEecCcEEEEEeCCC--cccccccccccCEEEEEe--CCCEEEEEcCCCCeeeccccCC
Q 003171 457 YLPFAVQC--LCTFGSQIWVGYMNGIVQVLDLEG--NLLGGWVAHSSPVIKMAV--GAGYIFTLANHGGIRGWNVTSP 528 (842)
Q Consensus 457 ~H~~~V~s--ls~dG~~LasGs~DgtIrlWD~~g--~~i~~l~gH~~~V~sla~--dg~~l~S~S~DgtIrvWd~~~~ 528 (842)
.|...++. ++||+++||++|+|.+++||+.++ ++-.++++|+.+||.-++ ||+||+|||.|+++|+|++...
T Consensus 213 ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~~kle~~l~gh~rWvWdc~FS~dg~YlvTassd~~~rlW~~~~~ 290 (311)
T KOG0315|consen 213 AHNGHILRCLLSPDVKYLATCSSDKTVKIWNTDDFFKLELVLTGHQRWVWDCAFSADGEYLVTASSDHTARLWDLSAG 290 (311)
T ss_pred cccceEEEEEECCCCcEEEeecCCceEEEEecCCceeeEEEeecCCceEEeeeeccCccEEEecCCCCceeecccccC
Confidence 89988885 378999999999999999999986 456788999999998764 8999999999999999998764
|
|
| >KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.3e-28 Score=258.85 Aligned_cols=256 Identities=14% Similarity=0.158 Sum_probs=209.4
Q ss_pred CCEEEE-ecCCCEEEEeCCCCccccccccccccCCCCCCCCCCeeeeeecCCCeEEEEEcCC--CCEEEEEeCCCcEEEE
Q 003171 142 EEQLWA-GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEA--SGVVWSGHRDGRIMCW 218 (842)
Q Consensus 142 ~~~l~~-~~D~~vrvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~V~~la~dpd--g~~LaSGs~DGtIrlW 218 (842)
++.|.. +-+|.++||+..+.... ..|+ .| ++.|.++.|.|. +..||||+.||++|+|
T Consensus 187 s~~laT~swsG~~kvW~~~~~~~~-----------------~~l~--gH-~~~v~~~~fhP~~~~~~lat~s~Dgtvklw 246 (459)
T KOG0272|consen 187 SKHLATGSWSGLVKVWSVPQCNLL-----------------QTLR--GH-TSRVGAAVFHPVDSDLNLATASADGTVKLW 246 (459)
T ss_pred CCeEEEeecCCceeEeecCCccee-----------------EEEe--cc-ccceeeEEEccCCCccceeeeccCCceeee
Confidence 335555 44999999998765221 1233 23 789999999997 5699999999999999
Q ss_pred ECCCCccCCCCCcceeEEecccCCcEEEEEEecCCC-EEEeeCCCcEEEEeCCCccceeecCCCceeeeEEEEeeceeec
Q 003171 219 KMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDL 297 (842)
Q Consensus 219 dl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~~t~~~~l~~~~~~~~~~~l~~~~s~~~l 297 (842)
++++. .++..+.||...|..|+|.|+|+ |.|+|.|.|-|+||+.++...+- .
T Consensus 247 ~~~~e--------~~l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~-------------------Q 299 (459)
T KOG0272|consen 247 KLSQE--------TPLQDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELLL-------------------Q 299 (459)
T ss_pred ccCCC--------cchhhhhcchhhheeeeecCCCceeeecccccchhhcccccchhhHh-------------------h
Confidence 99986 67888999999999999999999 78999999999999988543321 1
Q ss_pred ccceeccceeeeecCCEEEEEEcCCCCEEEEeC-CCcEEEEEccCCcEEEEeecCCceEeeeecccCCCcccccceEEEE
Q 003171 298 RSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKI 376 (842)
Q Consensus 298 ~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s-~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~ 376 (842)
+|| +..|..+++.++|..+.+|+ |..-+|||++||.++-.|.+|...+.
T Consensus 300 EGH----------s~~v~~iaf~~DGSL~~tGGlD~~~RvWDlRtgr~im~L~gH~k~I~-------------------- 349 (459)
T KOG0272|consen 300 EGH----------SKGVFSIAFQPDGSLAATGGLDSLGRVWDLRTGRCIMFLAGHIKEIL-------------------- 349 (459)
T ss_pred ccc----------ccccceeEecCCCceeeccCccchhheeecccCcEEEEeccccccee--------------------
Confidence 223 44677888988999999988 56788999999999999987754322
Q ss_pred EecCCCCccceeeeEeecCcceEEecCCcEEEEee-c-----CccccCCCceEEEEECC-CCc-EEEEeCCCeEEEEcC-
Q 003171 377 VTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAA-K-----GGFGDDNRRTEALTTSI-DGM-IWTGGANGLLLQWDP- 447 (842)
Q Consensus 377 ~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~-~-----g~~~~~~~~v~al~~s~-dg~-l~Sgs~DgtIrlWD~- 447 (842)
++.|.|++.+.++|+.|...++|. . -+...|..-|..|.|+| .|+ |+|+|.|+++++|..
T Consensus 350 -----------~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~ 418 (459)
T KOG0272|consen 350 -----------SVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTIPAHSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTR 418 (459)
T ss_pred -----------eEeECCCceEEeecCCCCcEEEeeecccccceecccccchhhheEecccCCeEEEEcccCcceeeecCC
Confidence 356777777888888888888886 1 23456888899999998 566 899999999999999
Q ss_pred CCCeeeeeecCCccEEEE--EecCCEEEEEecCcEEEEEe
Q 003171 448 NGNRLQDFQYLPFAVQCL--CTFGSQIWVGYMNGIVQVLD 485 (842)
Q Consensus 448 ~g~~l~~l~~H~~~V~sl--s~dG~~LasGs~DgtIrlWD 485 (842)
+..+++.+.||.+.|.|+ ++||..|++++.|+||++|.
T Consensus 419 ~~~~~ksLaGHe~kV~s~Dis~d~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 419 TWSPLKSLAGHEGKVISLDISPDSQAIATSSFDRTIKLWR 458 (459)
T ss_pred CcccchhhcCCccceEEEEeccCCceEEEeccCceeeecc
Confidence 789999999999999987 57899999999999999996
|
|
| >KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.8e-27 Score=266.31 Aligned_cols=372 Identities=19% Similarity=0.245 Sum_probs=243.2
Q ss_pred EEecCCEEEE-ecCCCEEEEeCCCCccccccccccccCCCCCCCCCCeeeeeecCCCeEEEEEcCCCCEEEEEeCCCcEE
Q 003171 138 IVCTEEQLWA-GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGHRDGRIM 216 (842)
Q Consensus 138 l~~~~~~l~~-~~D~~vrvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~V~~la~dpdg~~LaSGs~DGtIr 216 (842)
|.+++..|+. +...-+|+|.+.++..... . ...| .+||.-++|+|.|.+|++|+.||.++
T Consensus 70 l~~d~~~L~~a~rs~llrv~~L~tgk~irs-----------------w-Ka~H-e~Pvi~ma~~~~g~LlAtggaD~~v~ 130 (775)
T KOG0319|consen 70 LTPDEEVLVTASRSQLLRVWSLPTGKLIRS-----------------W-KAIH-EAPVITMAFDPTGTLLATGGADGRVK 130 (775)
T ss_pred ecCCccEEEEeeccceEEEEEcccchHhHh-----------------H-hhcc-CCCeEEEEEcCCCceEEeccccceEE
Confidence 3445555655 5567999999988754321 1 1124 88999999999999999999999999
Q ss_pred EEECCCCccCCCCCcceeEEecccCCcEEEEEEecCCC---EEEeeCCCcEEEEeCCCccceeecCCCceeeeEEEEeec
Q 003171 217 CWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD---LWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERS 293 (842)
Q Consensus 217 lWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~---L~SgS~DgtIrvWd~~t~~~~l~~~~~~~~~~~l~~~~s 293 (842)
+||+..+ .+.+.|+||.+.|.++.|.|+-. |++|..|+++|+||+.+...++ .
T Consensus 131 VWdi~~~--------~~th~fkG~gGvVssl~F~~~~~~~lL~sg~~D~~v~vwnl~~~~tcl--~-------------- 186 (775)
T KOG0319|consen 131 VWDIKNG--------YCTHSFKGHGGVVSSLLFHPHWNRWLLASGATDGTVRVWNLNDKRTCL--H-------------- 186 (775)
T ss_pred EEEeeCC--------EEEEEecCCCceEEEEEeCCccchhheeecCCCceEEEEEcccCchHH--H--------------
Confidence 9999997 78999999999999999999864 6899999999999997543211 0
Q ss_pred eeecccceeccceeeeecCCEEEEEEcCCCCEEEEeC-CCcEEEEEccCCcEEEEeecCCceEeeeeccc----------
Q 003171 294 YIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVFNIDGQIENRVDMSL---------- 362 (842)
Q Consensus 294 ~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s-~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~---------- 362 (842)
.++.| .+.++.+++..++..+.+++ |+.+.|||+.+.+.++++....+++..+-+..
T Consensus 187 --~~~~H----------~S~vtsL~~~~d~~~~ls~~RDkvi~vwd~~~~~~l~~lp~ye~~E~vv~l~~~~~~~~~~~~ 254 (775)
T KOG0319|consen 187 --TMILH----------KSAVTSLAFSEDSLELLSVGRDKVIIVWDLVQYKKLKTLPLYESLESVVRLREELGGKGEYII 254 (775)
T ss_pred --HHHhh----------hhheeeeeeccCCceEEEeccCcEEEEeehhhhhhhheechhhheeeEEEechhcCCcceEEE
Confidence 01112 45677788777666666555 77889999987777666532211111000000
Q ss_pred --------------------------C-------------------CCc---ccc-cce---------------------
Q 003171 363 --------------------------L-------------------PDF---AME-DEF--------------------- 372 (842)
Q Consensus 363 --------------------------~-------------------~~~---~~~-~~~--------------------- 372 (842)
. +++ .++ ++.
T Consensus 255 TaG~~g~~~~~d~es~~~~~~~~~~~~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l~i~k~ivG~ndEI~Dm~~lG~ 334 (775)
T KOG0319|consen 255 TAGGSGVVQYWDSESGKCVYKQRQSDSEEIDHLLAIESMSQLLLVTAEQNLFLYDEDELTIVKQIVGYNDEILDMKFLGP 334 (775)
T ss_pred EecCCceEEEEecccchhhhhhccCCchhhhcceeccccCceEEEEccceEEEEEccccEEehhhcCCchhheeeeecCC
Confidence 0 000 000 000
Q ss_pred ---EEEEEecCCCCcc-----------------ceeeeEeecCcceEEecCCcEEEEee----------cCccccCCCce
Q 003171 373 ---KTKIVTSSKKDKA-----------------QSSFGFFQRSRNAIMGAADAVRRVAA----------KGGFGDDNRRT 422 (842)
Q Consensus 373 ---~~~~~s~~~~~~~-----------------~~s~~~~~~~~~~~~g~~~~v~~v~~----------~g~~~~~~~~v 422 (842)
.+.+.+++..-+. +-++..+..+...++++.|...++|. .+...+|...|
T Consensus 335 e~~~laVATNs~~lr~y~~~~~~c~ii~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~sv 414 (775)
T KOG0319|consen 335 EESHLAVATNSPELRLYTLPTSYCQIIPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSV 414 (775)
T ss_pred ccceEEEEeCCCceEEEecCCCceEEEeCchhheeeeeecccCcEEEEecCCceEEEEEecCCcchhhhhhhhccccccc
Confidence 0111111100000 00111122222333444444333331 12334688899
Q ss_pred EEEEECCCCc--EEEEeCCCeEEEEcCCC----------CeeeeeecCCccEEEEE--ecCCEEEEEecCcEEEEEeCC-
Q 003171 423 EALTTSIDGM--IWTGGANGLLLQWDPNG----------NRLQDFQYLPFAVQCLC--TFGSQIWVGYMNGIVQVLDLE- 487 (842)
Q Consensus 423 ~al~~s~dg~--l~Sgs~DgtIrlWD~~g----------~~l~~l~~H~~~V~sls--~dG~~LasGs~DgtIrlWD~~- 487 (842)
.+++++..+- ++++|.|++|++|++.+ ++..+...|...|+|++ +..+.||+||.|++.+||+++
T Consensus 415 gava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~ 494 (775)
T KOG0319|consen 415 GAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQ 494 (775)
T ss_pred ceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCCceEEecccccceeeecccC
Confidence 9999987765 79999999999999833 12223346999999985 567899999999999999998
Q ss_pred CcccccccccccCEEEEEeC--CCEEEEEcCCCCeeeccccCCCCCcchhhhhhcccccccccccce------eEEEEEE
Q 003171 488 GNLLGGWVAHSSPVIKMAVG--AGYIFTLANHGGIRGWNVTSPGPLDSILCKELAGKEFLYTRMENL------KILAGTW 559 (842)
Q Consensus 488 g~~i~~l~gH~~~V~sla~d--g~~l~S~S~DgtIrvWd~~~~~~~d~~l~~~l~~r~~~y~~~~~~------~i~~~tw 559 (842)
..+..+|.||.-.|++|.+. .+.++|+|.|+|||||.+.++.++..+-.+...--...|...++. .=.+=-|
T Consensus 495 ~~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSClkT~eGH~~aVlra~F~~~~~qliS~~adGliKlW 574 (775)
T KOG0319|consen 495 LRLLGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCLKTFEGHTSAVLRASFIRNGKQLISAGADGLIKLW 574 (775)
T ss_pred ceEEEEeeCCccceEEEEeccccceeEeccCCceEEEEEeccceeeeeecCccceeEeeeeeeCCcEEEeccCCCcEEEE
Confidence 67899999999999999975 458999999999999999988876554422222222222222221 1234569
Q ss_pred EeCCC
Q 003171 560 NVGQG 564 (842)
Q Consensus 560 Nv~~~ 564 (842)
|+..+
T Consensus 575 nikt~ 579 (775)
T KOG0319|consen 575 NIKTN 579 (775)
T ss_pred eccch
Confidence 99755
|
|
| >KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription] | Back alignment and domain information |
|---|
Probab=99.95 E-value=6.1e-27 Score=265.04 Aligned_cols=240 Identities=19% Similarity=0.317 Sum_probs=188.9
Q ss_pred EEEE-e-cCCCEEEEeCCCCc--cccc--------cccccccCCCCCCCCCCeeeeeec-CCCeEEEEEcCCCCEEEEEe
Q 003171 144 QLWA-G-GENGLRVWNLKELY--DESE--------SDSVSVSKSKGEDGTAPFKESVKG-VSSVMCMVGDEASGVVWSGH 210 (842)
Q Consensus 144 ~l~~-~-~D~~vrvWdl~~~~--~~~~--------~~~~~~~~~~~~~~~~~~~~~~~g-~~~V~~la~dpdg~~LaSGs 210 (842)
.+.| | .|..|++|.+.... .... +-+....-+..|+....-...+-| .+||+.+.|+|+.++|.|+|
T Consensus 391 smlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH~GPVyg~sFsPd~rfLlScS 470 (707)
T KOG0263|consen 391 SMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGHSGPVYGCSFSPDRRFLLSCS 470 (707)
T ss_pred chhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeecCCCceeeeeecccccceeecc
Confidence 5555 4 38899999996311 1100 000011123344444443332323 89999999999999999999
Q ss_pred CCCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCCC-EEEeeCCCcEEEEeCCCccceeecCCCceeeeEEE
Q 003171 211 RDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALI 289 (842)
Q Consensus 211 ~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~~t~~~~l~~~~~~~~~~~l~ 289 (842)
.|+++|+|.+.+- .+....+||..||+.|.|+|.|. ++|||.|+|.|+|..+..... +.
T Consensus 471 ED~svRLWsl~t~--------s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~~~Pl-Ri----------- 530 (707)
T KOG0263|consen 471 EDSSVRLWSLDTW--------SCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWSTDHNKPL-RI----------- 530 (707)
T ss_pred CCcceeeeecccc--------eeEEEecCCCcceeeEEecCCceEEEecCCCceeeeeecccCCch-hh-----------
Confidence 9999999999996 56778899999999999999997 899999999999998652211 11
Q ss_pred EeeceeecccceeccceeeeecCCEEEEEEcCCCCEEEEeC-CCcEEEEEccCCcEEEEeecCCceEeeeecccCCCccc
Q 003171 290 VERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAM 368 (842)
Q Consensus 290 ~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s-~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~~~ 368 (842)
+.+| -+++.|+.+.|+...+++|+ |+|+++||+.+|..++.|.
T Consensus 531 -------fagh----------lsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~------------------- 574 (707)
T KOG0263|consen 531 -------FAGH----------LSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFT------------------- 574 (707)
T ss_pred -------hccc----------ccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEec-------------------
Confidence 1122 56899999999999999988 6799999999988766554
Q ss_pred ccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEeecCccccCCCceEEEEECCCCc-EEEEeCCCeEEEEcC
Q 003171 369 EDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGM-IWTGGANGLLLQWDP 447 (842)
Q Consensus 369 ~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~al~~s~dg~-l~Sgs~DgtIrlWD~ 447 (842)
+|...|.+|+|||+|+ |+||+.||.|++||+
T Consensus 575 ------------------------------------------------GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl 606 (707)
T KOG0263|consen 575 ------------------------------------------------GHKGPVTALAFSPCGRYLASGDEDGLIKIWDL 606 (707)
T ss_pred ------------------------------------------------CCCCceEEEEEcCCCceEeecccCCcEEEEEc
Confidence 3445677899999998 899999999999999
Q ss_pred -CCCeeeeeecCCccEEEEEe--cCCEEEEEecCcEEEEEeCC
Q 003171 448 -NGNRLQDFQYLPFAVQCLCT--FGSQIWVGYMNGIVQVLDLE 487 (842)
Q Consensus 448 -~g~~l~~l~~H~~~V~sls~--dG~~LasGs~DgtIrlWD~~ 487 (842)
.|+.+.++.+|++.|.++++ ||..||+|+.|.+|+|||+.
T Consensus 607 ~~~~~v~~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~ 649 (707)
T KOG0263|consen 607 ANGSLVKQLKGHTGTIYSLSFSRDGNVLASGGADNSVRLWDLT 649 (707)
T ss_pred CCCcchhhhhcccCceeEEEEecCCCEEEecCCCCeEEEEEch
Confidence 78999999999999999864 89999999999999999975
|
|
| >KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.7e-26 Score=233.73 Aligned_cols=245 Identities=18% Similarity=0.210 Sum_probs=196.8
Q ss_pred CCCeEEEEEcCC-CCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCCCE-EEeeCCCcEEEEe
Q 003171 191 VSSVMCMVGDEA-SGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGDL-WSGSEGGGIKIWP 268 (842)
Q Consensus 191 ~~~V~~la~dpd-g~~LaSGs~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~L-~SgS~DgtIrvWd 268 (842)
.+.|..++..+. -++|.++|.|.++.+|++.... -+.-...+.+.||+..|..++.++||.. +|+|+|+++|+||
T Consensus 15 ~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd---~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~~lrlWD 91 (315)
T KOG0279|consen 15 TDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDD---IKYGVPVRRLTGHSHFVSDVVLSSDGNFALSASWDGTLRLWD 91 (315)
T ss_pred CceEEEEEeecCCCceEEEcccceEEEEEEeccCc---cccCceeeeeeccceEecceEEccCCceEEeccccceEEEEE
Confidence 789999998876 5899999999999999987641 1122446778999999999999999994 6999999999999
Q ss_pred CCCccceeecCCCceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcCCCCEEEEeC-CCcEEEEEccCCcEEEE
Q 003171 269 WEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKV 347 (842)
Q Consensus 269 ~~t~~~~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s-~~tI~lWD~~tg~~l~~ 347 (842)
+++++....+ .+| ..+|.++++++++.++.+++ |+||++|+...+.. -+
T Consensus 92 l~~g~~t~~f-------------------~GH----------~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~ck-~t 141 (315)
T KOG0279|consen 92 LATGESTRRF-------------------VGH----------TKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGVCK-YT 141 (315)
T ss_pred ecCCcEEEEE-------------------Eec----------CCceEEEEecCCCceeecCCCcceeeeeeecccEE-EE
Confidence 9886543322 223 56899999999999999998 78999999864322 11
Q ss_pred eecCCceEeeeecccCCCcccccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEeecCccccCCCceEEEEE
Q 003171 348 FNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTT 427 (842)
Q Consensus 348 l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~al~~ 427 (842)
...+ .+...|.++.|
T Consensus 142 ~~~~-----------------------------------------------------------------~~~~WVscvrf 156 (315)
T KOG0279|consen 142 IHED-----------------------------------------------------------------SHREWVSCVRF 156 (315)
T ss_pred EecC-----------------------------------------------------------------CCcCcEEEEEE
Confidence 1100 11345677888
Q ss_pred CCCC---cEEEEeCCCeEEEEcCC-CCeeeeeecCCccEEEE--EecCCEEEEEecCcEEEEEeCC-CcccccccccccC
Q 003171 428 SIDG---MIWTGGANGLLLQWDPN-GNRLQDFQYLPFAVQCL--CTFGSQIWVGYMNGIVQVLDLE-GNLLGGWVAHSSP 500 (842)
Q Consensus 428 s~dg---~l~Sgs~DgtIrlWD~~-g~~l~~l~~H~~~V~sl--s~dG~~LasGs~DgtIrlWD~~-g~~i~~l~gH~~~ 500 (842)
+|+. .|+++|.|++||+||+. -+..+++.||+..|+.+ ++||...++|+.||.+.|||++ ++.+.++ .|...
T Consensus 157 sP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~lysl-~a~~~ 235 (315)
T KOG0279|consen 157 SPNESNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNLYSL-EAFDI 235 (315)
T ss_pred cCCCCCcEEEEccCCceEEEEccCCcchhhccccccccEEEEEECCCCCEEecCCCCceEEEEEccCCceeEec-cCCCe
Confidence 8863 48999999999999995 57788899999999976 5799999999999999999997 8888877 57889
Q ss_pred EEEEEeCCC-EEEEEcCCCCeeeccccCCCCCcch
Q 003171 501 VIKMAVGAG-YIFTLANHGGIRGWNVTSPGPLDSI 534 (842)
Q Consensus 501 V~sla~dg~-~l~S~S~DgtIrvWd~~~~~~~d~~ 534 (842)
|.++++.++ +-+.++++.+|||||+.+...++.+
T Consensus 236 v~sl~fspnrywL~~at~~sIkIwdl~~~~~v~~l 270 (315)
T KOG0279|consen 236 VNSLCFSPNRYWLCAATATSIKIWDLESKAVVEEL 270 (315)
T ss_pred EeeEEecCCceeEeeccCCceEEEeccchhhhhhc
Confidence 999998766 4557888999999999887666654
|
|
| >KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.95 E-value=5.4e-27 Score=243.39 Aligned_cols=233 Identities=19% Similarity=0.281 Sum_probs=191.7
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCCC-EEEeeCCCcEEEEeC
Q 003171 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPW 269 (842)
Q Consensus 191 ~~~V~~la~dpdg~~LaSGs~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~ 269 (842)
-++|.|++++|.+++++||+.|++|+|||+++| +...++.||-..|..|++|+--- |+|+++|+.||-||+
T Consensus 151 lgWVr~vavdP~n~wf~tgs~DrtikIwDlatg--------~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VKCwDL 222 (460)
T KOG0285|consen 151 LGWVRSVAVDPGNEWFATGSADRTIKIWDLATG--------QLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKCWDL 222 (460)
T ss_pred cceEEEEeeCCCceeEEecCCCceeEEEEcccC--------eEEEeecchhheeeeeeecccCceEEEecCCCeeEEEec
Confidence 789999999999999999999999999999998 78889999999999999998654 899999999999999
Q ss_pred CCccceeecCCCceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcCCCCEEEEeC-CCcEEEEEccCCcEEEEe
Q 003171 270 EAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVF 348 (842)
Q Consensus 270 ~t~~~~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s-~~tI~lWD~~tg~~l~~l 348 (842)
+..+-.-.+++ | -+.|.+|...+.-..|++++ |.++++||++|+..+.+|
T Consensus 223 e~nkvIR~YhG-------------------H----------lS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l 273 (460)
T KOG0285|consen 223 EYNKVIRHYHG-------------------H----------LSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVL 273 (460)
T ss_pred hhhhhHHHhcc-------------------c----------cceeEEEeccccceeEEecCCcceEEEeeecccceEEEe
Confidence 76432211111 1 22467777777777777766 679999999998877777
Q ss_pred ecCCceEeeeecccCCCcccccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEeecCccccCCCceEEEEE-
Q 003171 349 NIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTT- 427 (842)
Q Consensus 349 ~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~al~~- 427 (842)
.+|... |..+.+
T Consensus 274 ~GH~~~-------------------------------------------------------------------V~~V~~~ 286 (460)
T KOG0285|consen 274 SGHTNP-------------------------------------------------------------------VASVMCQ 286 (460)
T ss_pred cCCCCc-------------------------------------------------------------------ceeEEee
Confidence 655321 222222
Q ss_pred CCCCcEEEEeCCCeEEEEcC-CCCeeeeeecCCccEEEEEecC--CEEEEEecCcEEEEEeCC-CcccccccccccCEEE
Q 003171 428 SIDGMIWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQCLCTFG--SQIWVGYMNGIVQVLDLE-GNLLGGWVAHSSPVIK 503 (842)
Q Consensus 428 s~dg~l~Sgs~DgtIrlWD~-~g~~l~~l~~H~~~V~sls~dG--~~LasGs~DgtIrlWD~~-g~~i~~l~gH~~~V~s 503 (842)
+-|+++++||.|++||+||+ .|+-..++..|...|.+++... ..+||++.| .|+-|++. |..++.+.+|++.|++
T Consensus 287 ~~dpqvit~S~D~tvrlWDl~agkt~~tlt~hkksvral~lhP~e~~fASas~d-nik~w~~p~g~f~~nlsgh~~iint 365 (460)
T KOG0285|consen 287 PTDPQVITGSHDSTVRLWDLRAGKTMITLTHHKKSVRALCLHPKENLFASASPD-NIKQWKLPEGEFLQNLSGHNAIINT 365 (460)
T ss_pred cCCCceEEecCCceEEEeeeccCceeEeeecccceeeEEecCCchhhhhccCCc-cceeccCCccchhhccccccceeee
Confidence 24788999999999999999 8999999999999999997654 477787776 69999985 8999999999999999
Q ss_pred EEe-CCCEEEEEcCCCCeeeccccCC
Q 003171 504 MAV-GAGYIFTLANHGGIRGWNVTSP 528 (842)
Q Consensus 504 la~-dg~~l~S~S~DgtIrvWd~~~~ 528 (842)
++. +...+++|+..|++..||.++.
T Consensus 366 l~~nsD~v~~~G~dng~~~fwdwksg 391 (460)
T KOG0285|consen 366 LSVNSDGVLVSGGDNGSIMFWDWKSG 391 (460)
T ss_pred eeeccCceEEEcCCceEEEEEecCcC
Confidence 995 5668999999999999998763
|
|
| >KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.9e-26 Score=247.01 Aligned_cols=296 Identities=18% Similarity=0.277 Sum_probs=209.8
Q ss_pred CCEEEE--ecCCCEEEEeCCCCccccccccccccCCCCCCCCCCeeeeeec---CCCeEEEEEcCCCCEEEEEeCCCcEE
Q 003171 142 EEQLWA--GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKG---VSSVMCMVGDEASGVVWSGHRDGRIM 216 (842)
Q Consensus 142 ~~~l~~--~~D~~vrvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g---~~~V~~la~dpdg~~LaSGs~DGtIr 216 (842)
.+.+++ +.|.+.|+|++..-.. .+++ -+ +-..++++.++. ..-|+||+++.+|..||+|+.||.+|
T Consensus 190 ~~~llasg~~~s~ari~~l~e~~~-~~~~--q~------~lrh~~~~~~~s~~~nkdVT~L~Wn~~G~~LatG~~~G~~r 260 (524)
T KOG0273|consen 190 RDGLLASGSGDSTARIWNLLENSN-IGST--QL------VLRHCIREGGKSVPSNKDVTSLDWNNDGTLLATGSEDGEAR 260 (524)
T ss_pred hhhhhhccCCccceeeeeehhhcc-ccch--hh------hhhhhhhhhcccCCccCCcceEEecCCCCeEEEeecCcEEE
Confidence 344666 3578999999964111 1100 00 001122221110 35799999999999999999999999
Q ss_pred EEECCCCccCCCCCcceeEEecccCCcEEEEEEecCCC-EEEeeCCCcEEEEeCCCccceeecCCCceeeeEEEEeecee
Q 003171 217 CWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYI 295 (842)
Q Consensus 217 lWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~~t~~~~l~~~~~~~~~~~l~~~~s~~ 295 (842)
+|+..+ ..+.+|--|++||.+|.++..|. |+|++-|+|+-+||..+++....+..++
T Consensus 261 iw~~~G---------~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~f~~~s------------- 318 (524)
T KOG0273|consen 261 IWNKDG---------NLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQFEFHS------------- 318 (524)
T ss_pred EEecCc---------hhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEEeeeecc-------------
Confidence 999987 46788899999999999999997 8999999999999996643221111000
Q ss_pred ecccceeccceeeeecCCEEEEEEcCCCCEEEE-eCCCcEEEEEccCCcEEEEeecCCceEeeeecccCCCcccccceEE
Q 003171 296 DLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWS-AGFLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKT 374 (842)
Q Consensus 296 ~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s-~s~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~ 374 (842)
.+.-+|... +...+++ ..++.|+++.+.-..++
T Consensus 319 -------------~~~lDVdW~----~~~~F~ts~td~~i~V~kv~~~~P~----------------------------- 352 (524)
T KOG0273|consen 319 -------------APALDVDWQ----SNDEFATSSTDGCIHVCKVGEDRPV----------------------------- 352 (524)
T ss_pred -------------CCccceEEe----cCceEeecCCCceEEEEEecCCCcc-----------------------------
Confidence 000112221 1112222 22344444433221111
Q ss_pred EEEecCCCCccceeeeEeecCcceEEecCCcEEEEeecCccccCCCceEEEEECCCCc-EEEEeCCCeEEEEcC-CCCee
Q 003171 375 KIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGM-IWTGGANGLLLQWDP-NGNRL 452 (842)
Q Consensus 375 ~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~al~~s~dg~-l~Sgs~DgtIrlWD~-~g~~l 452 (842)
++|.+|.+.|.++.+.|-|. |+|+|.|+|+|||.. .+.+.
T Consensus 353 --------------------------------------~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~~~ 394 (524)
T KOG0273|consen 353 --------------------------------------KTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQSNSV 394 (524)
T ss_pred --------------------------------------eeeecccCceEEEEECCCCceEEEecCCCeeEeeecCCCcch
Confidence 23556778888999999888 689999999999998 78899
Q ss_pred eeeecCCccEEEEE--e---------cCCEEEEEecCcEEEEEeCC-CcccccccccccCEEEEEe--CCCEEEEEcCCC
Q 003171 453 QDFQYLPFAVQCLC--T---------FGSQIWVGYMNGIVQVLDLE-GNLLGGWVAHSSPVIKMAV--GAGYIFTLANHG 518 (842)
Q Consensus 453 ~~l~~H~~~V~sls--~---------dG~~LasGs~DgtIrlWD~~-g~~i~~l~gH~~~V~sla~--dg~~l~S~S~Dg 518 (842)
..|.+|+..|..+. | .+..|++++.|++|++||+. |.++.+|..|+.+|++|++ +|++++||+.||
T Consensus 395 ~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~pVysvafS~~g~ylAsGs~dg 474 (524)
T KOG0273|consen 395 HDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQEPVYSVAFSPNGRYLASGSLDG 474 (524)
T ss_pred hhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccCCCceEEEEecCCCcEEEecCCCC
Confidence 99999999988873 3 24589999999999999997 8999999999999999985 799999999999
Q ss_pred CeeeccccCCCCCcchhhhhhcccccccccccceeEEEEEEEeCCCCC
Q 003171 519 GIRGWNVTSPGPLDSILCKELAGKEFLYTRMENLKILAGTWNVGQGRA 566 (842)
Q Consensus 519 tIrvWd~~~~~~~d~~l~~~l~~r~~~y~~~~~~~i~~~twNv~~~~~ 566 (842)
.|.+|+.+++.-... |..... ||..-||.++.+.
T Consensus 475 ~V~iws~~~~~l~~s------------~~~~~~--Ifel~Wn~~G~kl 508 (524)
T KOG0273|consen 475 CVHIWSTKTGKLVKS------------YQGTGG--IFELCWNAAGDKL 508 (524)
T ss_pred eeEeccccchheeEe------------ecCCCe--EEEEEEcCCCCEE
Confidence 999999766432222 222222 8999999998654
|
|
| >KOG0266 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.95 E-value=5.4e-26 Score=261.86 Aligned_cols=265 Identities=23% Similarity=0.334 Sum_probs=209.2
Q ss_pred CCEEEE-ecCCCEEEEeCCCCccccccccccccCCCCCCCCCCeeeeeecCCCeEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 003171 142 EEQLWA-GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGHRDGRIMCWKM 220 (842)
Q Consensus 142 ~~~l~~-~~D~~vrvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~V~~la~dpdg~~LaSGs~DGtIrlWdl 220 (842)
++.+.+ +.|+.+++|+...... .. ...+ ..| ...|.+++|+|+++.|++|+.|++||+||+
T Consensus 171 g~~l~~~~~~~~i~~~~~~~~~~-~~-------------~~~l---~~h-~~~v~~~~fs~d~~~l~s~s~D~tiriwd~ 232 (456)
T KOG0266|consen 171 GRALAAASSDGLIRIWKLEGIKS-NL-------------LREL---SGH-TRGVSDVAFSPDGSYLLSGSDDKTLRIWDL 232 (456)
T ss_pred CCeEEEccCCCcEEEeecccccc-hh-------------hccc---ccc-ccceeeeEECCCCcEEEEecCCceEEEeec
Confidence 445444 4799999999854331 00 0001 123 778999999999999999999999999999
Q ss_pred CCCccCCCCCcceeEEecccCCcEEEEEEecCCC-EEEeeCCCcEEEEeCCCccceeecCCCceeeeEEEEeeceeeccc
Q 003171 221 NARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRS 299 (842)
Q Consensus 221 ~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~~t~~~~l~~~~~~~~~~~l~~~~s~~~l~~ 299 (842)
.... ..+++++||...|++++|+|+|+ ++|||.|++|||||+.+++....+. +
T Consensus 233 ~~~~-------~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~-------------------~ 286 (456)
T KOG0266|consen 233 KDDG-------RNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKLK-------------------G 286 (456)
T ss_pred cCCC-------eEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEeee-------------------c
Confidence 4321 67889999999999999999997 6899999999999998754332222 2
Q ss_pred ceeccceeeeecCCEEEEEEcCCCCEEEEeC-CCcEEEEEccCCcE--EEEeecCCceEeeeecccCCCcccccceEEEE
Q 003171 300 HLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTREL--LKVFNIDGQIENRVDMSLLPDFAMEDEFKTKI 376 (842)
Q Consensus 300 ~~~~~~~~~~~s~~v~~las~~~~~~v~s~s-~~tI~lWD~~tg~~--l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~ 376 (842)
| +..+..+++..++..+++++ |+.|++||+.+++. ++.+..+.
T Consensus 287 h----------s~~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~------------------------ 332 (456)
T KOG0266|consen 287 H----------SDGISGLAFSPDGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAE------------------------ 332 (456)
T ss_pred c----------CCceEEEEECCCCCEEEEcCCCccEEEEECCCCceeeeecccCCC------------------------
Confidence 2 55688899999999999988 57899999999984 33322110
Q ss_pred EecCCCCccceeeeEeecCcceEEecCCcEEEEeecCccccCCCceEEEEECCCCc-EEEEeCCCeEEEEcC-CCCeeee
Q 003171 377 VTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGM-IWTGGANGLLLQWDP-NGNRLQD 454 (842)
Q Consensus 377 ~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~al~~s~dg~-l~Sgs~DgtIrlWD~-~g~~l~~ 454 (842)
... .+..+.|+|++. +++++.|+++++||+ .+.++++
T Consensus 333 ----------------------------------------~~~-~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~ 371 (456)
T KOG0266|consen 333 ----------------------------------------NSA-PVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGT 371 (456)
T ss_pred ----------------------------------------CCC-ceeEEEECCCCcEEEEecCCCeEEEEEccCCcceee
Confidence 011 355678999988 899999999999999 6899999
Q ss_pred eecCCccEEEE-----EecCCEEEEEecCcEEEEEeCC-Cccccccccc-ccCEEEEE--eCCCEEEEEc--CCCCeeec
Q 003171 455 FQYLPFAVQCL-----CTFGSQIWVGYMNGIVQVLDLE-GNLLGGWVAH-SSPVIKMA--VGAGYIFTLA--NHGGIRGW 523 (842)
Q Consensus 455 l~~H~~~V~sl-----s~dG~~LasGs~DgtIrlWD~~-g~~i~~l~gH-~~~V~sla--~dg~~l~S~S--~DgtIrvW 523 (842)
+.+|.+.++|+ ...|+++++|+.|+.|++||.. +..+..+.+| ...|..++ +...++++++ .|+.|++|
T Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~~~~~~l~~h~~~~~~~~~~~~~~~~~~s~s~~~d~~~~~w 451 (456)
T KOG0266|consen 372 YTGHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSGGILQRLEGHSKAAVSDLSSHPTENLIASSSFEGDGLIRLW 451 (456)
T ss_pred ecccCCcceeEecccccCCCCeEEEEeCCceEEEEeCCccchhhhhcCCCCCceeccccCCCcCeeeecCcCCCceEEEe
Confidence 99999987665 2368899999999999999998 6788999999 88888877 4677888888 79999999
Q ss_pred cc
Q 003171 524 NV 525 (842)
Q Consensus 524 d~ 525 (842)
..
T Consensus 452 ~~ 453 (456)
T KOG0266|consen 452 KY 453 (456)
T ss_pred cC
Confidence 74
|
|
| >KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.95 E-value=3e-26 Score=264.56 Aligned_cols=268 Identities=21% Similarity=0.282 Sum_probs=216.8
Q ss_pred CCEEEEe-cCCCEEEEeCCCCccccccccccccCCCCCCCCCCeeeeeecCCCeEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 003171 142 EEQLWAG-GENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGHRDGRIMCWKM 220 (842)
Q Consensus 142 ~~~l~~~-~D~~vrvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~V~~la~dpdg~~LaSGs~DGtIrlWdl 220 (842)
.+.+..+ .|.+|++||..+.+...+ ++ .+| .+.|.++++...+..|+|||.|.++|+||.
T Consensus 218 ~~~~~~~s~~~tl~~~~~~~~~~i~~----------------~l--~GH-~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~ 278 (537)
T KOG0274|consen 218 DGFFKSGSDDSTLHLWDLNNGYLILT----------------RL--VGH-FGGVWGLAFPSGGDKLVSGSTDKTERVWDC 278 (537)
T ss_pred cCeEEecCCCceeEEeecccceEEEe----------------ec--cCC-CCCceeEEEecCCCEEEEEecCCcEEeEec
Confidence 4455554 478999999987664321 11 133 889999999877899999999999999999
Q ss_pred CCCccCCCCCcceeEEecccCCcEEEEEEecCCCEEEeeCCCcEEEEeCCCccceeecCCCceeeeEEEEeeceeecccc
Q 003171 221 NARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGDLWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSH 300 (842)
Q Consensus 221 ~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~L~SgS~DgtIrvWd~~t~~~~l~~~~~~~~~~~l~~~~s~~~l~~~ 300 (842)
.+| ++..++.||.+.|.+|...+ ..+++||.|.+||||+++++.....+ ++|
T Consensus 279 ~sg--------~C~~~l~gh~stv~~~~~~~-~~~~sgs~D~tVkVW~v~n~~~l~l~-------------------~~h 330 (537)
T KOG0274|consen 279 STG--------ECTHSLQGHTSSVRCLTIDP-FLLVSGSRDNTVKVWDVTNGACLNLL-------------------RGH 330 (537)
T ss_pred CCC--------cEEEEecCCCceEEEEEccC-ceEeeccCCceEEEEeccCcceEEEe-------------------ccc
Confidence 998 78999999999999998765 34789999999999999865432111 112
Q ss_pred eeccceeeeecCCEEEEEEcCCCCEEEEeC-CCcEEEEEccCCcEEEEeecCCceEeeeecccCCCcccccceEEEEEec
Q 003171 301 LSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTS 379 (842)
Q Consensus 301 ~~~~~~~~~~s~~v~~las~~~~~~v~s~s-~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~ 379 (842)
...|+++..+ +..+.+++ |++|++||+.+++|+++|.+|..
T Consensus 331 ----------~~~V~~v~~~--~~~lvsgs~d~~v~VW~~~~~~cl~sl~gH~~-------------------------- 372 (537)
T KOG0274|consen 331 ----------TGPVNCVQLD--EPLLVSGSYDGTVKVWDPRTGKCLKSLSGHTG-------------------------- 372 (537)
T ss_pred ----------cccEEEEEec--CCEEEEEecCceEEEEEhhhceeeeeecCCcc--------------------------
Confidence 4567777775 56677776 67899999999999888765532
Q ss_pred CCCCccceeeeEeecCcceEEecCCcEEEEeecCccccCCCceEEEEECCCCcEEEEeCCCeEEEEcC-CC-Ceeeeeec
Q 003171 380 SKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGMIWTGGANGLLLQWDP-NG-NRLQDFQY 457 (842)
Q Consensus 380 ~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~al~~s~dg~l~Sgs~DgtIrlWD~-~g-~~l~~l~~ 457 (842)
+|.++.+.....+++|+.|++|++||+ +. +|+.++.+
T Consensus 373 -----------------------------------------~V~sl~~~~~~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~ 411 (537)
T KOG0274|consen 373 -----------------------------------------RVYSLIVDSENRLLSGSLDTTIKVWDLRTKRKCIHTLQG 411 (537)
T ss_pred -----------------------------------------eEEEEEecCcceEEeeeeccceEeecCCchhhhhhhhcC
Confidence 334444444456899999999999999 56 79999999
Q ss_pred CCccEEEEEecCCEEEEEecCcEEEEEeCC-Ccccccccc-cccCEEEEEeCCCEEEEEcCCCCeeeccccCCCCCcchh
Q 003171 458 LPFAVQCLCTFGSQIWVGYMNGIVQVLDLE-GNLLGGWVA-HSSPVIKMAVGAGYIFTLANHGGIRGWNVTSPGPLDSIL 535 (842)
Q Consensus 458 H~~~V~sls~dG~~LasGs~DgtIrlWD~~-g~~i~~l~g-H~~~V~sla~dg~~l~S~S~DgtIrvWd~~~~~~~d~~l 535 (842)
|..-|.++...+++|.+++.|++|++||.+ +++++++.+ |.+.|.++......+++++.|+++++||+.+..+...++
T Consensus 412 h~~~v~~l~~~~~~Lvs~~aD~~Ik~WD~~~~~~~~~~~~~~~~~v~~l~~~~~~il~s~~~~~~~l~dl~~~~~~~~l~ 491 (537)
T KOG0274|consen 412 HTSLVSSLLLRDNFLVSSSADGTIKLWDAEEGECLRTLEGRHVGGVSALALGKEEILCSSDDGSVKLWDLRSGTLIRTLL 491 (537)
T ss_pred CcccccccccccceeEeccccccEEEeecccCceeeeeccCCcccEEEeecCcceEEEEecCCeeEEEecccCchhhhhh
Confidence 999999999999999999999999999987 889999999 789999998877789999999999999998877766553
|
|
| >KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.1e-26 Score=241.21 Aligned_cols=284 Identities=18% Similarity=0.294 Sum_probs=208.3
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEe-cCCC---EEEeeCCCcEEE
Q 003171 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCIS-SYGD---LWSGSEGGGIKI 266 (842)
Q Consensus 191 ~~~V~~la~dpdg~~LaSGs~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs-~dG~---L~SgS~DgtIrv 266 (842)
..+|.++... ++.|.||++||++|+||..+ +.+.+..||+++|.++++- ++.. ++|+|.|.|+++
T Consensus 105 dDWVSsv~~~--~~~IltgsYDg~~riWd~~G---------k~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~L 173 (423)
T KOG0313|consen 105 DDWVSSVKGA--SKWILTGSYDGTSRIWDLKG---------KSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRL 173 (423)
T ss_pred hhhhhhhccc--CceEEEeecCCeeEEEecCC---------ceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEE
Confidence 7788888776 69999999999999999987 6788999999999988763 4433 899999999999
Q ss_pred EeCCCccceeecCCCceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcCCCCEEEEeCC-CcEEEEEccCCcEE
Q 003171 267 WPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGF-LSFALWDARTRELL 345 (842)
Q Consensus 267 Wd~~t~~~~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s~-~tI~lWD~~tg~~l 345 (842)
|.++.++..+..... -+|| ...|.++.+.+++.++.++++ .+|+||+..+...
T Consensus 174 w~~~~~~~~~~~~~~---------------~~GH----------k~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~- 227 (423)
T KOG0313|consen 174 WKWNVGENKVKALKV---------------CRGH----------KRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEE- 227 (423)
T ss_pred EEecCchhhhhHHhH---------------hccc----------ccceeEEEecCCCCeEEeecccceeeecccCCCcc-
Confidence 999764432221100 0122 345777888888999999995 6899999433211
Q ss_pred EEeecCCceEeeeecccCCCcccccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEeecCccccCCCceEEE
Q 003171 346 KVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEAL 425 (842)
Q Consensus 346 ~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~al 425 (842)
..+... .. ..+ ...++++. .+....+ -.+.+|...|.++
T Consensus 228 ~~~E~~----------s~-------~rr----k~~~~~~~--------------~~~r~P~------vtl~GHt~~Vs~V 266 (423)
T KOG0313|consen 228 DELESS----------SN-------RRR----KKQKREKE--------------GGTRTPL------VTLEGHTEPVSSV 266 (423)
T ss_pred cccccc----------ch-------hhh----hhhhhhhc--------------ccccCce------EEecccccceeeE
Confidence 111100 00 000 00000000 0111111 1366899999999
Q ss_pred EECCCCcEEEEeCCCeEEEEcC-CCCeeeeeecCCccEEEEEe--cCCEEEEEecCcEEEEEeCC---Cc-ccccccccc
Q 003171 426 TTSIDGMIWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQCLCT--FGSQIWVGYMNGIVQVLDLE---GN-LLGGWVAHS 498 (842)
Q Consensus 426 ~~s~dg~l~Sgs~DgtIrlWD~-~g~~l~~l~~H~~~V~sls~--dG~~LasGs~DgtIrlWD~~---g~-~i~~l~gH~ 498 (842)
.+++.+.++|+|.|+|||.||+ .|.+..++.+ ....+|++. ..++|++|+.|..|||||.+ |. ..++|.||.
T Consensus 267 ~w~d~~v~yS~SwDHTIk~WDletg~~~~~~~~-~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs~v~~s~~gH~ 345 (423)
T KOG0313|consen 267 VWSDATVIYSVSWDHTIKVWDLETGGLKSTLTT-NKSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDGSVVSQSLIGHK 345 (423)
T ss_pred EEcCCCceEeecccceEEEEEeecccceeeeec-CcceeEeecccccceeeecCCCCceeecCCCCCCCceeEEeeecch
Confidence 9999888999999999999999 7888888776 567888865 45699999999999999986 33 467899999
Q ss_pred cCEEEEEe---CCCEEEEEcCCCCeeeccccCCC-CCcchhhhhhcccccccccccceeEEEEEEEeCCCCC
Q 003171 499 SPVIKMAV---GAGYIFTLANHGGIRGWNVTSPG-PLDSILCKELAGKEFLYTRMENLKILAGTWNVGQGRA 566 (842)
Q Consensus 499 ~~V~sla~---dg~~l~S~S~DgtIrvWd~~~~~-~~d~~l~~~l~~r~~~y~~~~~~~i~~~twNv~~~~~ 566 (842)
++|.++.+ +..+++|+|+|+++|+||+++.. |+.++..+ +-||+..+||-+....
T Consensus 346 nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h-------------~DKvl~vdW~~~~~Iv 404 (423)
T KOG0313|consen 346 NWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGH-------------NDKVLSVDWNEGGLIV 404 (423)
T ss_pred hhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeeccC-------------CceEEEEeccCCceEE
Confidence 99999985 45579999999999999999877 88877543 3369999999875443
|
|
| >KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.94 E-value=2e-25 Score=222.52 Aligned_cols=265 Identities=17% Similarity=0.224 Sum_probs=197.6
Q ss_pred CCccccCceeEEEEec------------CCEEEEecCCCEEEEeCCCCccccccccccccCCCCCCCCCCeeeeeecCCC
Q 003171 126 LRETQIGCFLRTIVCT------------EEQLWAGGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSS 193 (842)
Q Consensus 126 ~~~~~~~~~~~~l~~~------------~~~l~~~~D~~vrvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 193 (842)
+||..+|.|.|+|.-. ++.|.++..-.||+||+.+.... +.+.| .++ +..
T Consensus 24 fWqa~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~qhvRlyD~~S~np~---------------Pv~t~--e~h-~kN 85 (311)
T KOG0315|consen 24 FWQALTGICSRTIQHPDSQVNRLEITPDKKDLAAAGNQHVRLYDLNSNNPN---------------PVATF--EGH-TKN 85 (311)
T ss_pred eeehhcCeEEEEEecCccceeeEEEcCCcchhhhccCCeeEEEEccCCCCC---------------ceeEE--ecc-CCc
Confidence 5677778888887522 33444466779999999765431 11222 234 778
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCC-CEEEeeCCCcEEEEeCCCc
Q 003171 194 VMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYG-DLWSGSEGGGIKIWPWEAI 272 (842)
Q Consensus 194 V~~la~dpdg~~LaSGs~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG-~L~SgS~DgtIrvWd~~t~ 272 (842)
|.++.|..+|++++|||.||++||||+... . +...-.|..+|++|+..|+. .|++|..+|.|||||+...
T Consensus 86 VtaVgF~~dgrWMyTgseDgt~kIWdlR~~--------~-~qR~~~~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~ 156 (311)
T KOG0315|consen 86 VTAVGFQCDGRWMYTGSEDGTVKIWDLRSL--------S-CQRNYQHNSPVNTVVLHPNQTELISGDQSGNIRVWDLGEN 156 (311)
T ss_pred eEEEEEeecCeEEEecCCCceEEEEeccCc--------c-cchhccCCCCcceEEecCCcceEEeecCCCcEEEEEccCC
Confidence 999999999999999999999999999874 2 23334577999999999985 4999999999999999654
Q ss_pred cceeecCCCceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcCCCCEEEEeCC-CcEEEEEccCCcEEEEeecC
Q 003171 273 EKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGF-LSFALWDARTRELLKVFNID 351 (842)
Q Consensus 273 ~~~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s~-~tI~lWD~~tg~~l~~l~~~ 351 (842)
.+.-.+.++.. ..+..+...++|.+++.+.. ++..+|++-+++....|.+
T Consensus 157 ~c~~~liPe~~----------------------------~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P- 207 (311)
T KOG0315|consen 157 SCTHELIPEDD----------------------------TSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEP- 207 (311)
T ss_pred ccccccCCCCC----------------------------cceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceE-
Confidence 33333333221 24667788888888888876 5799999876432111100
Q ss_pred CceEeeeecccCCCcccccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEeecCccccCCCceEEEEECCCC
Q 003171 352 GQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDG 431 (842)
Q Consensus 352 ~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~al~~s~dg 431 (842)
. -+|..|..-+....+|||+
T Consensus 208 ----------------------------~--------------------------------~k~~ah~~~il~C~lSPd~ 227 (311)
T KOG0315|consen 208 ----------------------------V--------------------------------HKFQAHNGHILRCLLSPDV 227 (311)
T ss_pred ----------------------------h--------------------------------hheecccceEEEEEECCCC
Confidence 0 0133455556677899999
Q ss_pred c-EEEEeCCCeEEEEcCCC--CeeeeeecCCccEEEE--EecCCEEEEEecCcEEEEEeCC-CcccccccccccCEEEEE
Q 003171 432 M-IWTGGANGLLLQWDPNG--NRLQDFQYLPFAVQCL--CTFGSQIWVGYMNGIVQVLDLE-GNLLGGWVAHSSPVIKMA 505 (842)
Q Consensus 432 ~-l~Sgs~DgtIrlWD~~g--~~l~~l~~H~~~V~sl--s~dG~~LasGs~DgtIrlWD~~-g~~i~~l~gH~~~V~sla 505 (842)
+ |+++|.|.++++|+.++ +.-..+++|..+|... +.||+||++|+.|+++|+||++ ++.++.+.||-..-.|++
T Consensus 228 k~lat~ssdktv~iwn~~~~~kle~~l~gh~rWvWdc~FS~dg~YlvTassd~~~rlW~~~~~k~v~qy~gh~K~~vc~~ 307 (311)
T KOG0315|consen 228 KYLATCSSDKTVKIWNTDDFFKLELVLTGHQRWVWDCAFSADGEYLVTASSDHTARLWDLSAGKEVRQYQGHHKAAVCVA 307 (311)
T ss_pred cEEEeecCCceEEEEecCCceeeEEEeecCCceEEeeeeccCccEEEecCCCCceeecccccCceeeecCCcccccEEEE
Confidence 8 89999999999999965 4556788999999965 4589999999999999999997 889999999998887776
Q ss_pred e
Q 003171 506 V 506 (842)
Q Consensus 506 ~ 506 (842)
.
T Consensus 308 l 308 (311)
T KOG0315|consen 308 L 308 (311)
T ss_pred e
Confidence 4
|
|
| >KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.9e-24 Score=234.20 Aligned_cols=346 Identities=15% Similarity=0.196 Sum_probs=244.2
Q ss_pred ceeEEEEecCC-EEEE--ecCCCEEEEeCCCCccccccccccccCCCCCCCCCCeeeeeecCCCeEEEEEcCCCCEEEEE
Q 003171 133 CFLRTIVCTEE-QLWA--GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSG 209 (842)
Q Consensus 133 ~~~~~l~~~~~-~l~~--~~D~~vrvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~V~~la~dpdg~~LaSG 209 (842)
+|++++....+ .+++ |+|+.+.+||=.++...+. .+. ...| .+.|++|+++||++.++|.
T Consensus 191 kFV~~VRysPDG~~Fat~gsDgki~iyDGktge~vg~------------l~~----~~aH-kGsIfalsWsPDs~~~~T~ 253 (603)
T KOG0318|consen 191 KFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEKVGE------------LED----SDAH-KGSIFALSWSPDSTQFLTV 253 (603)
T ss_pred cceeeEEECCCCCeEEEecCCccEEEEcCCCccEEEE------------ecC----CCCc-cccEEEEEECCCCceEEEe
Confidence 58888887755 5555 7899999999877654432 110 1123 8899999999999999999
Q ss_pred eCCCcEEEEECCCCcc-----------------------------------CCCCCcceeEEecccCCcEEEEEEecCCC
Q 003171 210 HRDGRIMCWKMNARLL-----------------------------------DSDDGFGEVLSWQAHRGPVLSLCISSYGD 254 (842)
Q Consensus 210 s~DGtIrlWdl~~g~~-----------------------------------~~~~~~~~~~~l~gH~~~V~slafs~dG~ 254 (842)
|.|.++||||+.+..+ -..........+.||..+|++++.++||+
T Consensus 254 SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~ 333 (603)
T KOG0318|consen 254 SADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGK 333 (603)
T ss_pred cCCceEEEEEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCC
Confidence 9999999999988752 00012224556789999999999999998
Q ss_pred -EEEeeCCCcEEEEeCCCccceeecCCCceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcCCCCEEEEeCCCc
Q 003171 255 -LWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGFLS 333 (842)
Q Consensus 255 -L~SgS~DgtIrvWd~~t~~~~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s~~t 333 (842)
|+|||.||.|.-|+..++... ++.+ ++| ++.++.++....+..+.++-|++
T Consensus 334 ~i~SgsyDG~I~~W~~~~g~~~-~~~g-----------------~~h----------~nqI~~~~~~~~~~~~t~g~Dd~ 385 (603)
T KOG0318|consen 334 TIYSGSYDGHINSWDSGSGTSD-RLAG-----------------KGH----------TNQIKGMAASESGELFTIGWDDT 385 (603)
T ss_pred EEEeeccCceEEEEecCCcccc-cccc-----------------ccc----------cceEEEEeecCCCcEEEEecCCe
Confidence 899999999999999765321 1111 112 55677788766565555555789
Q ss_pred EEEEEccCCcEEEE--eecCCceEeeeecccCCCccc---ccceEEEEEecCCC------CccceeeeEeecCcceEEec
Q 003171 334 FALWDARTRELLKV--FNIDGQIENRVDMSLLPDFAM---EDEFKTKIVTSSKK------DKAQSSFGFFQRSRNAIMGA 402 (842)
Q Consensus 334 I~lWD~~tg~~l~~--l~~~~~~~~~~~~s~~~~~~~---~~~~~~~~~s~~~~------~~~~~s~~~~~~~~~~~~g~ 402 (842)
+++-++..+.+-+. +....|.. .++........+ +.+ +.+++..++ .-....+++.+.+..+.+|.
T Consensus 386 l~~~~~~~~~~t~~~~~~lg~QP~-~lav~~d~~~avv~~~~~--iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~vaVGG 462 (603)
T KOG0318|consen 386 LRVISLKDNGYTKSEVVKLGSQPK-GLAVLSDGGTAVVACISD--IVLLQDQTKVSSIPIGYESSAVAVSPDGSEVAVGG 462 (603)
T ss_pred EEEEecccCcccccceeecCCCce-eEEEcCCCCEEEEEecCc--EEEEecCCcceeeccccccceEEEcCCCCEEEEec
Confidence 99998865443222 12122221 111111100100 111 112222111 11223567778888889999
Q ss_pred CCcEEEEee-c-------CccccCCCceEEEEECCCCc-EEEEeCCCeEEEEcC-CCCe-eeeeecCCccEEEEE--ecC
Q 003171 403 ADAVRRVAA-K-------GGFGDDNRRTEALTTSIDGM-IWTGGANGLLLQWDP-NGNR-LQDFQYLPFAVQCLC--TFG 469 (842)
Q Consensus 403 ~~~v~~v~~-~-------g~~~~~~~~v~al~~s~dg~-l~Sgs~DgtIrlWD~-~g~~-l~~l~~H~~~V~sls--~dG 469 (842)
.++-..+.. . +.+.+|...++.+++|||+. |++|...+.|.+||+ +.+. ...+.-|+..|+|++ |+.
T Consensus 463 ~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vaySpd~~yla~~Da~rkvv~yd~~s~~~~~~~w~FHtakI~~~aWsP~n 542 (603)
T KOG0318|consen 463 QDGKVHVYSLSGDELKEEAKLLEHRAAITDVAYSPDGAYLAAGDASRKVVLYDVASREVKTNRWAFHTAKINCVAWSPNN 542 (603)
T ss_pred ccceEEEEEecCCcccceeeeecccCCceEEEECCCCcEEEEeccCCcEEEEEcccCceecceeeeeeeeEEEEEeCCCc
Confidence 888665543 2 24456888999999999998 788888899999999 4443 334556999999996 577
Q ss_pred CEEEEEecCcEEEEEeCC--CcccccccccccCEEEEEe-CCCEEEEEcCCCCeeecccc
Q 003171 470 SQIWVGYMNGIVQVLDLE--GNLLGGWVAHSSPVIKMAV-GAGYIFTLANHGGIRGWNVT 526 (842)
Q Consensus 470 ~~LasGs~DgtIrlWD~~--g~~i~~l~gH~~~V~sla~-dg~~l~S~S~DgtIrvWd~~ 526 (842)
+++|+||.|-.|.||+++ .+.+....+|...|+.|.+ |...++|.|.|..||+|++.
T Consensus 543 ~~vATGSlDt~Viiysv~kP~~~i~iknAH~~gVn~v~wlde~tvvSsG~Da~iK~W~v~ 602 (603)
T KOG0318|consen 543 KLVATGSLDTNVIIYSVKKPAKHIIIKNAHLGGVNSVAWLDESTVVSSGQDANIKVWNVT 602 (603)
T ss_pred eEEEeccccceEEEEEccChhhheEeccccccCceeEEEecCceEEeccCcceeEEeccc
Confidence 899999999999999987 4667778899999999986 99999999999999999974
|
|
| >KOG0266 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.6e-25 Score=255.00 Aligned_cols=238 Identities=21% Similarity=0.352 Sum_probs=196.8
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCCC-EEEeeCCCcEEEEeC
Q 003171 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPW 269 (842)
Q Consensus 191 ~~~V~~la~dpdg~~LaSGs~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~ 269 (842)
..+|.|+.|+++|+.+++++.|++|++|+..+.. . ...+.+.+|...|++++|+|+|+ +++|+.|++|||||+
T Consensus 159 ~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~-----~-~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~ 232 (456)
T KOG0266|consen 159 CPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIK-----S-NLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDL 232 (456)
T ss_pred cCceEEEEEcCCCCeEEEccCCCcEEEeeccccc-----c-hhhccccccccceeeeEECCCCcEEEEecCCceEEEeec
Confidence 5689999999999999999999999999996651 0 25666789999999999999997 789999999999999
Q ss_pred CCccceeecCCCceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcCCCCEEEEeC-CCcEEEEEccCCcEEEEe
Q 003171 270 EAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVF 348 (842)
Q Consensus 270 ~t~~~~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s-~~tI~lWD~~tg~~l~~l 348 (842)
......+. .+++| ...+.++++.+.+..+.|++ |.+|+|||+++++++++|
T Consensus 233 ~~~~~~~~------------------~l~gH----------~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l 284 (456)
T KOG0266|consen 233 KDDGRNLK------------------TLKGH----------STYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKL 284 (456)
T ss_pred cCCCeEEE------------------EecCC----------CCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEee
Confidence 33211111 12334 56788899999888999988 579999999999987776
Q ss_pred ecCCceEeeeecccCCCcccccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEeecCccccCCCceEEEEEC
Q 003171 349 NIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTS 428 (842)
Q Consensus 349 ~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~al~~s 428 (842)
.+|. ..|.+++|+
T Consensus 285 ~~hs-------------------------------------------------------------------~~is~~~f~ 297 (456)
T KOG0266|consen 285 KGHS-------------------------------------------------------------------DGISGLAFS 297 (456)
T ss_pred eccC-------------------------------------------------------------------CceEEEEEC
Confidence 5443 335567888
Q ss_pred CCCc-EEEEeCCCeEEEEcC-CCC--eeeeeecCCcc--EEEEE--ecCCEEEEEecCcEEEEEeCC-Cccccccccccc
Q 003171 429 IDGM-IWTGGANGLLLQWDP-NGN--RLQDFQYLPFA--VQCLC--TFGSQIWVGYMNGIVQVLDLE-GNLLGGWVAHSS 499 (842)
Q Consensus 429 ~dg~-l~Sgs~DgtIrlWD~-~g~--~l~~l~~H~~~--V~sls--~dG~~LasGs~DgtIrlWD~~-g~~i~~l~gH~~ 499 (842)
+||. |++++.|+.|++||+ ++. |+.++.++... |+++. ++|++|++++.|+++++||+. +++...+.+|..
T Consensus 298 ~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~~~~~~ 377 (456)
T KOG0266|consen 298 PDGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGTYTGHSN 377 (456)
T ss_pred CCCCEEEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCCcceeeecccCC
Confidence 8887 789999999999999 677 67888887766 77765 579999999999999999998 889999999999
Q ss_pred CEEEEE-----eCCCEEEEEcCCCCeeeccccCCC
Q 003171 500 PVIKMA-----VGAGYIFTLANHGGIRGWNVTSPG 529 (842)
Q Consensus 500 ~V~sla-----~dg~~l~S~S~DgtIrvWd~~~~~ 529 (842)
.+.++. .++.++++++.|+.|.+|++.+..
T Consensus 378 ~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~~ 412 (456)
T KOG0266|consen 378 LVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSGG 412 (456)
T ss_pred cceeEecccccCCCCeEEEEeCCceEEEEeCCccc
Confidence 776653 478999999999999999987643
|
|
| >KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.5e-25 Score=233.23 Aligned_cols=288 Identities=18% Similarity=0.245 Sum_probs=199.4
Q ss_pred ceeEEEEecCCEEEEe-cCCCEEEEeCCCCccccccccccccCCCCCCCCCCeeeeeecCCCeEEEEE---cCCCCEEEE
Q 003171 133 CFLRTIVCTEEQLWAG-GENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVG---DEASGVVWS 208 (842)
Q Consensus 133 ~~~~~l~~~~~~l~~~-~D~~vrvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~V~~la~---dpdg~~LaS 208 (842)
.++.++...++.++.| .|+.+|+||++- . + .+....| +++|.++++ ++....++|
T Consensus 106 DWVSsv~~~~~~IltgsYDg~~riWd~~G-k---~----------------~~~~~Gh-t~~ik~v~~v~~n~~~~~fvs 164 (423)
T KOG0313|consen 106 DWVSSVKGASKWILTGSYDGTSRIWDLKG-K---S----------------IKTIVGH-TGPIKSVAWVIKNSSSCLFVS 164 (423)
T ss_pred hhhhhhcccCceEEEeecCCeeEEEecCC-c---e----------------EEEEecC-CcceeeeEEEecCCccceEEE
Confidence 3455555556666664 599999999852 1 1 1223344 778876554 333457999
Q ss_pred EeCCCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCCC-EEEeeCCCcEEEEeCCCcc-ceeecCCC-c---
Q 003171 209 GHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIE-KALSLKPE-E--- 282 (842)
Q Consensus 209 Gs~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~~t~~-~~l~~~~~-~--- 282 (842)
||.|.++++|..+.+. +..+.+..-+||.++|-+|...++|. +.|||.|.+|++|+.++.. ..+.-... .
T Consensus 165 as~Dqtl~Lw~~~~~~----~~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~ 240 (423)
T KOG0313|consen 165 ASMDQTLRLWKWNVGE----NKVKALKVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKK 240 (423)
T ss_pred ecCCceEEEEEecCch----hhhhHHhHhcccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhh
Confidence 9999999999998862 33344444569999999999999997 7899999999999943311 11100000 0
Q ss_pred -eeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcCCCCEEEEeC-CCcEEEEEccCCcEEEEeecCCceEeeeec
Q 003171 283 -RHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVFNIDGQIENRVDM 360 (842)
Q Consensus 283 -~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s-~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~ 360 (842)
.........-+.+.+.|| ...|..+...+ ...+.+++ |.||+.||+.+|.++.++....
T Consensus 241 ~~~~~~~~~r~P~vtl~GH----------t~~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg~~~~~~~~~k-------- 301 (423)
T KOG0313|consen 241 QKREKEGGTRTPLVTLEGH----------TEPVSSVVWSD-ATVIYSVSWDHTIKVWDLETGGLKSTLTTNK-------- 301 (423)
T ss_pred hhhhhcccccCceEEeccc----------ccceeeEEEcC-CCceEeecccceEEEEEeecccceeeeecCc--------
Confidence 000000000123344444 55677777765 55667777 5799999999988755443211
Q ss_pred ccCCCcccccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEeecCccccCCCceEEEEECCCCc-EEEEeCC
Q 003171 361 SLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGM-IWTGGAN 439 (842)
Q Consensus 361 s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~al~~s~dg~-l~Sgs~D 439 (842)
...++..+|... |++||.|
T Consensus 302 ------------------------------------------------------------sl~~i~~~~~~~Ll~~gssd 321 (423)
T KOG0313|consen 302 ------------------------------------------------------------SLNCISYSPLSKLLASGSSD 321 (423)
T ss_pred ------------------------------------------------------------ceeEeecccccceeeecCCC
Confidence 112333444434 7899999
Q ss_pred CeEEEEcC-CC--C-eeeeeecCCccEEEEEe--c-CCEEEEEecCcEEEEEeCC-Cc-ccccccccccCEEEEEe-CCC
Q 003171 440 GLLLQWDP-NG--N-RLQDFQYLPFAVQCLCT--F-GSQIWVGYMNGIVQVLDLE-GN-LLGGWVAHSSPVIKMAV-GAG 509 (842)
Q Consensus 440 gtIrlWD~-~g--~-~l~~l~~H~~~V~sls~--d-G~~LasGs~DgtIrlWD~~-g~-~i~~l~gH~~~V~sla~-dg~ 509 (842)
..|||||+ ++ . ..++|.+|+++|.++.. . --++++|+.|++++|||++ .+ .+..+.+|.+.|.++.+ .+.
T Consensus 322 r~irl~DPR~~~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~DKvl~vdW~~~~ 401 (423)
T KOG0313|consen 322 RHIRLWDPRTGDGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHNDKVLSVDWNEGG 401 (423)
T ss_pred CceeecCCCCCCCceeEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeeccCCceEEEEeccCCc
Confidence 99999999 43 3 45789999999999854 3 3489999999999999997 44 79999999999999996 677
Q ss_pred EEEEEcCCCCeeecc
Q 003171 510 YIFTLANHGGIRGWN 524 (842)
Q Consensus 510 ~l~S~S~DgtIrvWd 524 (842)
+++|||.|++||+..
T Consensus 402 ~IvSGGaD~~l~i~~ 416 (423)
T KOG0313|consen 402 LIVSGGADNKLRIFK 416 (423)
T ss_pred eEEeccCcceEEEec
Confidence 999999999999976
|
|
| >KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.3e-24 Score=243.59 Aligned_cols=270 Identities=16% Similarity=0.276 Sum_probs=201.1
Q ss_pred eeEEEEec--CCEEEEecC--CCEEEEeCCCCccccccccccccCCCCCCCCCCeeeeeecCCCeEEEEEcCCCCEEEEE
Q 003171 134 FLRTIVCT--EEQLWAGGE--NGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSG 209 (842)
Q Consensus 134 ~~~~l~~~--~~~l~~~~D--~~vrvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~V~~la~dpdg~~LaSG 209 (842)
.|.+++.. ++.+-.|.- +.+-||+...-. .-+++..| ...+.|++++|||++||||
T Consensus 309 ~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEs-------------------YVlKQQgH-~~~i~~l~YSpDgq~iaTG 368 (893)
T KOG0291|consen 309 KILTVSFNSTGDWIAFGCSKLGQLLVWEWQSES-------------------YVLKQQGH-SDRITSLAYSPDGQLIATG 368 (893)
T ss_pred eeeEEEecccCCEEEEcCCccceEEEEEeeccc-------------------eeeecccc-ccceeeEEECCCCcEEEec
Confidence 45555544 655555543 589999986421 12344455 7789999999999999999
Q ss_pred eCCCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCCC-EEEeeCCCcEEEEeCCCccceeecCCCceeeeEE
Q 003171 210 HRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEKALSLKPEERHTAAL 288 (842)
Q Consensus 210 s~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~~t~~~~l~~~~~~~~~~~l 288 (842)
+.||+|||||...| -|..+|..|+..|+++.|+..|+ |+|.|-|||||.||+....+--+++..
T Consensus 369 ~eDgKVKvWn~~Sg--------fC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft~P------- 433 (893)
T KOG0291|consen 369 AEDGKVKVWNTQSG--------FCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFTSP------- 433 (893)
T ss_pred cCCCcEEEEeccCc--------eEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeecccceeeeecCC-------
Confidence 99999999999988 57899999999999999999998 789999999999999653221111100
Q ss_pred EEeeceeecccceeccceeeeecCCEEEEEEcCCCCEEEEeCCC--cEEEEEccCCcEEEEeecCCceEeeeecccCCCc
Q 003171 289 IVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGFL--SFALWDARTRELLKVFNIDGQIENRVDMSLLPDF 366 (842)
Q Consensus 289 ~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s~~--tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~ 366 (842)
. .....|++.++.|..|..|+-. .|.+|+++||+++.+|.+|.
T Consensus 434 ---------------~------p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHE-------------- 478 (893)
T KOG0291|consen 434 ---------------E------PIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILSGHE-------------- 478 (893)
T ss_pred ---------------C------ceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehhcCCC--------------
Confidence 0 1134578888888877766633 69999999999987766543
Q ss_pred ccccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEeecCccccCCCceEEEEECCCCc-EEEEeCCCeEEEE
Q 003171 367 AMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGM-IWTGGANGLLLQW 445 (842)
Q Consensus 367 ~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~al~~s~dg~-l~Sgs~DgtIrlW 445 (842)
+.|..+.|+|+|. |+|||.|+|||+|
T Consensus 479 -----------------------------------------------------gPVs~l~f~~~~~~LaS~SWDkTVRiW 505 (893)
T KOG0291|consen 479 -----------------------------------------------------GPVSGLSFSPDGSLLASGSWDKTVRIW 505 (893)
T ss_pred -----------------------------------------------------CcceeeEEccccCeEEeccccceEEEE
Confidence 3344567888887 8999999999999
Q ss_pred cC-CC-CeeeeeecCCccEEEEE--ecCCEEEEEecCcEEEEEeCC-Ccccc----------------ccc----ccccC
Q 003171 446 DP-NG-NRLQDFQYLPFAVQCLC--TFGSQIWVGYMNGIVQVLDLE-GNLLG----------------GWV----AHSSP 500 (842)
Q Consensus 446 D~-~g-~~l~~l~~H~~~V~sls--~dG~~LasGs~DgtIrlWD~~-g~~i~----------------~l~----gH~~~ 500 (842)
|+ .. ....++. +...|+.++ |||+.|++++.||.|.+||.+ +..+. .++ +-...
T Consensus 506 ~if~s~~~vEtl~-i~sdvl~vsfrPdG~elaVaTldgqItf~d~~~~~q~~~IdgrkD~~~gR~~~D~~ta~~sa~~K~ 584 (893)
T KOG0291|consen 506 DIFSSSGTVETLE-IRSDVLAVSFRPDGKELAVATLDGQITFFDIKEAVQVGSIDGRKDLSGGRKETDRITAENSAKGKT 584 (893)
T ss_pred EeeccCceeeeEe-eccceeEEEEcCCCCeEEEEEecceEEEEEhhhceeeccccchhhccccccccceeehhhcccCCc
Confidence 99 43 3445554 566777765 689999999999999999964 22111 111 12234
Q ss_pred EEEEE--eCCCEEEEEcCCCCeeeccccC
Q 003171 501 VIKMA--VGAGYIFTLANHGGIRGWNVTS 527 (842)
Q Consensus 501 V~sla--~dg~~l~S~S~DgtIrvWd~~~ 527 (842)
.++|. +||..+++||..+.|+++++..
T Consensus 585 Ftti~ySaDG~~IlAgG~sn~iCiY~v~~ 613 (893)
T KOG0291|consen 585 FTTICYSADGKCILAGGESNSICIYDVPE 613 (893)
T ss_pred eEEEEEcCCCCEEEecCCcccEEEEECch
Confidence 55554 6999999999999999999754
|
|
| >KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.5e-23 Score=227.37 Aligned_cols=332 Identities=15% Similarity=0.175 Sum_probs=218.8
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEec---ccCCcEEEEEEecCCC-EEEeeCCCcEEE
Q 003171 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQ---AHRGPVLSLCISSYGD-LWSGSEGGGIKI 266 (842)
Q Consensus 191 ~~~V~~la~dpdg~~LaSGs~DGtIrlWdl~~g~~~~~~~~~~~~~l~---gH~~~V~slafs~dG~-L~SgS~DgtIrv 266 (842)
..-|.|+.++|||.+++|.+.||+|.++|-.+| +....+. +|++.|.+|+|+||++ ++|+|.|+++||
T Consensus 190 skFV~~VRysPDG~~Fat~gsDgki~iyDGktg--------e~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KI 261 (603)
T KOG0318|consen 190 SKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTG--------EKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKI 261 (603)
T ss_pred ccceeeEEECCCCCeEEEecCCccEEEEcCCCc--------cEEEEecCCCCccccEEEEEECCCCceEEEecCCceEEE
Confidence 668999999999999999999999999999988 5566665 9999999999999997 999999999999
Q ss_pred EeCCCccceeecC----CCceeeeEEEEeeceeec--cc--------ceeccceeeeecCCEEEEEEcCCCCEEEEeC-C
Q 003171 267 WPWEAIEKALSLK----PEERHTAALIVERSYIDL--RS--------HLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-F 331 (842)
Q Consensus 267 Wd~~t~~~~l~~~----~~~~~~~~l~~~~s~~~l--~~--------~~~~~~~~~~~s~~v~~las~~~~~~v~s~s-~ 331 (842)
||+.+.+...++. .+..++..+.-...++.+ .| ...+..+.+-+.-.+.+|..++++..+.+++ |
T Consensus 262 WdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyD 341 (603)
T KOG0318|consen 262 WDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYD 341 (603)
T ss_pred EEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEEeeccC
Confidence 9998754322221 112222222211111111 00 0011111122355688999999999999999 5
Q ss_pred CcEEEEEccCCcEEEEe-ecCCceEeeeecccCC---CcccccceEEEEEecCC--CCc-----cce-eeeEeecCcceE
Q 003171 332 LSFALWDARTRELLKVF-NIDGQIENRVDMSLLP---DFAMEDEFKTKIVTSSK--KDK-----AQS-SFGFFQRSRNAI 399 (842)
Q Consensus 332 ~tI~lWD~~tg~~l~~l-~~~~~~~~~~~~s~~~---~~~~~~~~~~~~~s~~~--~~~-----~~~-s~~~~~~~~~~~ 399 (842)
+.|.-||..+|..-+.. .+|...+..+..+... ...+|+.++..-..... +.. .|. .+....++..++
T Consensus 342 G~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~av 421 (603)
T KOG0318|consen 342 GHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAV 421 (603)
T ss_pred ceEEEEecCCccccccccccccceEEEEeecCCCcEEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEE
Confidence 78999999998875443 3343333333333311 12345544421111110 000 000 111111122233
Q ss_pred EecCCcEEEEeec-Cccc-cCCCceEEEEECCCCc-EEEEeCCCeEEEEcCCC-Ce--eeeeecCCccEEEEE--ecCCE
Q 003171 400 MGAADAVRRVAAK-GGFG-DDNRRTEALTTSIDGM-IWTGGANGLLLQWDPNG-NR--LQDFQYLPFAVQCLC--TFGSQ 471 (842)
Q Consensus 400 ~g~~~~v~~v~~~-g~~~-~~~~~v~al~~s~dg~-l~Sgs~DgtIrlWD~~g-~~--l~~l~~H~~~V~sls--~dG~~ 471 (842)
......+..+... +.+. .-.....+++++|++. ++.|+.|+.|.++.++| +. ...+..|..+|++++ +||+|
T Consensus 422 v~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vaySpd~~y 501 (603)
T KOG0318|consen 422 VACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGSEVAVGGQDGKVHVYSLSGDELKEEAKLLEHRAAITDVAYSPDGAY 501 (603)
T ss_pred EEecCcEEEEecCCcceeeccccccceEEEcCCCCEEEEecccceEEEEEecCCcccceeeeecccCCceEEEECCCCcE
Confidence 3333333333321 1111 1123456799999998 78999999999999976 32 224557999999885 68999
Q ss_pred EEEEecCcEEEEEeCCCcc--cccccccccCEEEEEe--CCCEEEEEcCCCCeeeccccCCCC
Q 003171 472 IWVGYMNGIVQVLDLEGNL--LGGWVAHSSPVIKMAV--GAGYIFTLANHGGIRGWNVTSPGP 530 (842)
Q Consensus 472 LasGs~DgtIrlWD~~g~~--i~~l~gH~~~V~sla~--dg~~l~S~S~DgtIrvWd~~~~~~ 530 (842)
||+|...+.|-+||++.+. ...|.-|+..|.+|++ +.++++|||-|..|.+|++..|..
T Consensus 502 la~~Da~rkvv~yd~~s~~~~~~~w~FHtakI~~~aWsP~n~~vATGSlDt~Viiysv~kP~~ 564 (603)
T KOG0318|consen 502 LAAGDASRKVVLYDVASREVKTNRWAFHTAKINCVAWSPNNKLVATGSLDTNVIIYSVKKPAK 564 (603)
T ss_pred EEEeccCCcEEEEEcccCceecceeeeeeeeEEEEEeCCCceEEEeccccceEEEEEccChhh
Confidence 9999999999999998543 5567789999999995 677899999999999999886643
|
|
| >KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.1e-25 Score=225.67 Aligned_cols=264 Identities=20% Similarity=0.241 Sum_probs=200.5
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCCC-EEEeeCCCcEEEEeC
Q 003171 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPW 269 (842)
Q Consensus 191 ~~~V~~la~dpdg~~LaSGs~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~ 269 (842)
.+.|+++.|+|+|..++||+.|..|.+|+..+.. +.-..++||+++|..|.|.+|+. |+|+|.|++|+.||.
T Consensus 47 ~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdc-------eN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~ 119 (338)
T KOG0265|consen 47 KGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDC-------ENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWDA 119 (338)
T ss_pred cceEEEEEECCCCCeEeecCCcceEEEEeccccc-------cceeeeccccceeEeeeeccCCCEEEEecCCceEEEEec
Confidence 8899999999999999999999999999987642 55677899999999999999998 899999999999999
Q ss_pred CCccceeecCCCceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcC-CCCEEEEeC-CCcEEEEEccCCcEEEE
Q 003171 270 EAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDH-SRAKVWSAG-FLSFALWDARTRELLKV 347 (842)
Q Consensus 270 ~t~~~~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~-~~~~v~s~s-~~tI~lWD~~tg~~l~~ 347 (842)
+++++..++..+...+.+ +.-.. +-..|.|++ |+|++|||+++++++++
T Consensus 120 ~tG~~~rk~k~h~~~vNs-----------------------------~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t 170 (338)
T KOG0265|consen 120 ETGKRIRKHKGHTSFVNS-----------------------------LDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKT 170 (338)
T ss_pred ccceeeehhccccceeee-----------------------------cCccccCCeEEEecCCCceEEEEeecccchhhc
Confidence 998876665443332221 11111 122444555 47999999999999888
Q ss_pred eecCCceEeeeecccCCCcccccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEee----cC--ccccCCCc
Q 003171 348 FNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAA----KG--GFGDDNRR 421 (842)
Q Consensus 348 l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~----~g--~~~~~~~~ 421 (842)
+.-.-+. . +++|.+.+.+.+.|.-+....+|. .+ .+.+|...
T Consensus 171 ~~~kyql-t-------------------------------Av~f~d~s~qv~sggIdn~ikvWd~r~~d~~~~lsGh~Dt 218 (338)
T KOG0265|consen 171 FENKYQL-T-------------------------------AVGFKDTSDQVISGGIDNDIKVWDLRKNDGLYTLSGHADT 218 (338)
T ss_pred cccceeE-E-------------------------------EEEecccccceeeccccCceeeeccccCcceEEeecccCc
Confidence 7432221 1 123333333444444444344443 11 34567788
Q ss_pred eEEEEECCCCc-EEEEeCCCeEEEEcCC----C-CeeeeeecCCc--cEEEE----EecCCEEEEEecCcEEEEEeCCC-
Q 003171 422 TEALTTSIDGM-IWTGGANGLLLQWDPN----G-NRLQDFQYLPF--AVQCL----CTFGSQIWVGYMNGIVQVLDLEG- 488 (842)
Q Consensus 422 v~al~~s~dg~-l~Sgs~DgtIrlWD~~----g-~~l~~l~~H~~--~V~sl----s~dG~~LasGs~DgtIrlWD~~g- 488 (842)
|+.+..+++|. +.+-+.|.++++||+. + +|++.+++|.. .++.| +++++.+.+|+.|+.+.+||..+
T Consensus 219 It~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~cswsp~~~~i~ags~dr~vyvwd~~~r 298 (338)
T KOG0265|consen 219 ITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWSPNGTKITAGSADRFVYVWDTTSR 298 (338)
T ss_pred eeeEEeccCCCccccccccceEEEEEecccCCCCceEEEeecchhhhhhhcceeeccCCCCccccccccceEEEeecccc
Confidence 89999999998 8999999999999983 3 57999998553 34433 57899999999999999999986
Q ss_pred cccccccccccCEEEEEeC--CCEEEEEcCCCCeee
Q 003171 489 NLLGGWVAHSSPVIKMAVG--AGYIFTLANHGGIRG 522 (842)
Q Consensus 489 ~~i~~l~gH~~~V~sla~d--g~~l~S~S~DgtIrv 522 (842)
.++..|.||.+.|+++++. ...|.|++.|++|.+
T Consensus 299 ~~lyklpGh~gsvn~~~Fhp~e~iils~~sdk~i~l 334 (338)
T KOG0265|consen 299 RILYKLPGHYGSVNEVDFHPTEPIILSCSSDKTIYL 334 (338)
T ss_pred cEEEEcCCcceeEEEeeecCCCcEEEEeccCceeEe
Confidence 6899999999999999964 457999999999865
|
|
| >KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.2e-25 Score=256.00 Aligned_cols=235 Identities=22% Similarity=0.349 Sum_probs=193.4
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEE-ecccCCcEEEEEEecCC-CEEEeeCCCcEEEEe
Q 003171 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLS-WQAHRGPVLSLCISSYG-DLWSGSEGGGIKIWP 268 (842)
Q Consensus 191 ~~~V~~la~dpdg~~LaSGs~DGtIrlWdl~~g~~~~~~~~~~~~~-l~gH~~~V~slafs~dG-~L~SgS~DgtIrvWd 268 (842)
...++|..+. .+.+.+|+.|++|++|+..++ ..+.. +.||.+.|.+++|..-+ .|+|||.|.|+||||
T Consensus 208 ~~~~~~~q~~--~~~~~~~s~~~tl~~~~~~~~--------~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd 277 (537)
T KOG0274|consen 208 DHVVLCLQLH--DGFFKSGSDDSTLHLWDLNNG--------YLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWD 277 (537)
T ss_pred cchhhhheee--cCeEEecCCCceeEEeecccc--------eEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEe
Confidence 5578999998 578999999999999999987 56666 99999999999998733 489999999999999
Q ss_pred CCCccceeecCCCceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcCCCCEEEEeC-CCcEEEEEccCCcEEEE
Q 003171 269 WEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKV 347 (842)
Q Consensus 269 ~~t~~~~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s-~~tI~lWD~~tg~~l~~ 347 (842)
..++++...+.. | .+.+.++.. .+.++.+|+ |.+|++|++.++.++.+
T Consensus 278 ~~sg~C~~~l~g-------------------h----------~stv~~~~~--~~~~~~sgs~D~tVkVW~v~n~~~l~l 326 (537)
T KOG0274|consen 278 CSTGECTHSLQG-------------------H----------TSSVRCLTI--DPFLLVSGSRDNTVKVWDVTNGACLNL 326 (537)
T ss_pred cCCCcEEEEecC-------------------C----------CceEEEEEc--cCceEeeccCCceEEEEeccCcceEEE
Confidence 988776544432 2 223444433 234455544 67999999999999888
Q ss_pred eecCCceEeeeecccCCCcccccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEeecCccccCCCceEEEEE
Q 003171 348 FNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTT 427 (842)
Q Consensus 348 l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~al~~ 427 (842)
+.+|.. .|.++..
T Consensus 327 ~~~h~~-------------------------------------------------------------------~V~~v~~ 339 (537)
T KOG0274|consen 327 LRGHTG-------------------------------------------------------------------PVNCVQL 339 (537)
T ss_pred eccccc-------------------------------------------------------------------cEEEEEe
Confidence 764332 2233333
Q ss_pred CCCCcEEEEeCCCeEEEEcC-CCCeeeeeecCCccEEEEEecC-CEEEEEecCcEEEEEeCC-C-cccccccccccCEEE
Q 003171 428 SIDGMIWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQCLCTFG-SQIWVGYMNGIVQVLDLE-G-NLLGGWVAHSSPVIK 503 (842)
Q Consensus 428 s~dg~l~Sgs~DgtIrlWD~-~g~~l~~l~~H~~~V~sls~dG-~~LasGs~DgtIrlWD~~-g-~~i~~l~gH~~~V~s 503 (842)
. ++.+++|+.|++|++||+ +++|++++++|+.+|.++.+++ .++++|+.|++|++||++ . +|+.++.+|.+.|.+
T Consensus 340 ~-~~~lvsgs~d~~v~VW~~~~~~cl~sl~gH~~~V~sl~~~~~~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~~v~~ 418 (537)
T KOG0274|consen 340 D-EPLLVSGSYDGTVKVWDPRTGKCLKSLSGHTGRVYSLIVDSENRLLSGSLDTTIKVWDLRTKRKCIHTLQGHTSLVSS 418 (537)
T ss_pred c-CCEEEEEecCceEEEEEhhhceeeeeecCCcceEEEEEecCcceEEeeeeccceEeecCCchhhhhhhhcCCcccccc
Confidence 3 456899999999999999 8999999999999999999999 999999999999999998 4 599999999999999
Q ss_pred EEeCCCEEEEEcCCCCeeeccccCCCCCcch
Q 003171 504 MAVGAGYIFTLANHGGIRGWNVTSPGPLDSI 534 (842)
Q Consensus 504 la~dg~~l~S~S~DgtIrvWd~~~~~~~d~~ 534 (842)
+...++.|+|++.|++||+||......+..+
T Consensus 419 l~~~~~~Lvs~~aD~~Ik~WD~~~~~~~~~~ 449 (537)
T KOG0274|consen 419 LLLRDNFLVSSSADGTIKLWDAEEGECLRTL 449 (537)
T ss_pred cccccceeEeccccccEEEeecccCceeeee
Confidence 9999999999999999999998877665554
|
|
| >KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.93 E-value=2e-24 Score=224.35 Aligned_cols=268 Identities=15% Similarity=0.271 Sum_probs=204.8
Q ss_pred CceeEEEEecCC-EEEE--ecCCCEEEEeCCCCccccccccccccCCCCCCCCCCeeeeeecCCCeEEEEEcCCCCEEEE
Q 003171 132 GCFLRTIVCTEE-QLWA--GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWS 208 (842)
Q Consensus 132 ~~~~~~l~~~~~-~l~~--~~D~~vrvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~V~~la~dpdg~~LaS 208 (842)
-.++|+++.+.. +.++ +.|++++|||++++.... +-.+| ...|..+++|+.--+|+|
T Consensus 151 lgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~Lkl-------------------tltGh-i~~vr~vavS~rHpYlFs 210 (460)
T KOG0285|consen 151 LGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKL-------------------TLTGH-IETVRGVAVSKRHPYLFS 210 (460)
T ss_pred cceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEE-------------------eecch-hheeeeeeecccCceEEE
Confidence 347999998844 6665 469999999998864321 11122 668999999999999999
Q ss_pred EeCCCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCCC-EEEeeCCCcEEEEeCCCccceeecCCCceeeeE
Q 003171 209 GHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEKALSLKPEERHTAA 287 (842)
Q Consensus 209 Gs~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~~t~~~~l~~~~~~~~~~~ 287 (842)
++.|+.||.||++.. +-++..-||-..|.+|+..|.-+ |+||+.|.++||||+.+......+
T Consensus 211 ~gedk~VKCwDLe~n--------kvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l--------- 273 (460)
T KOG0285|consen 211 AGEDKQVKCWDLEYN--------KVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVL--------- 273 (460)
T ss_pred ecCCCeeEEEechhh--------hhHHHhccccceeEEEeccccceeEEecCCcceEEEeeecccceEEEe---------
Confidence 999999999999986 66788899999999999999765 789999999999999774332222
Q ss_pred EEEeeceeecccceeccceeeeecCCEEEEEEcCCCCEEEEeC-CCcEEEEEccCCcEEEEeecCCceEeeeecccCCCc
Q 003171 288 LIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDF 366 (842)
Q Consensus 288 l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s-~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~ 366 (842)
.|| .+.|..+.+.+.+..|.+++ |.||++||++.|+-..++..|
T Consensus 274 ----------~GH----------~~~V~~V~~~~~dpqvit~S~D~tvrlWDl~agkt~~tlt~h--------------- 318 (460)
T KOG0285|consen 274 ----------SGH----------TNPVASVMCQPTDPQVITGSHDSTVRLWDLRAGKTMITLTHH--------------- 318 (460)
T ss_pred ----------cCC----------CCcceeEEeecCCCceEEecCCceEEEeeeccCceeEeeecc---------------
Confidence 233 44566667766667777777 789999999988765554332
Q ss_pred ccccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEeecCccccCCCceEEEEECCCCc-EEEEeCCCeEEEE
Q 003171 367 AMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGM-IWTGGANGLLLQW 445 (842)
Q Consensus 367 ~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~al~~s~dg~-l~Sgs~DgtIrlW 445 (842)
...|.+++..|.-. ++|+|.|. |+.|
T Consensus 319 ----------------------------------------------------kksvral~lhP~e~~fASas~dn-ik~w 345 (460)
T KOG0285|consen 319 ----------------------------------------------------KKSVRALCLHPKENLFASASPDN-IKQW 345 (460)
T ss_pred ----------------------------------------------------cceeeEEecCCchhhhhccCCcc-ceec
Confidence 22344555556544 68899887 9999
Q ss_pred cC-CCCeeeeeecCCccEEEEEec-CCEEEEEecCcEEEEEeCC-Cc---ccccccc-----cccCEEEEEe--CCCEEE
Q 003171 446 DP-NGNRLQDFQYLPFAVQCLCTF-GSQIWVGYMNGIVQVLDLE-GN---LLGGWVA-----HSSPVIKMAV--GAGYIF 512 (842)
Q Consensus 446 D~-~g~~l~~l~~H~~~V~sls~d-G~~LasGs~DgtIrlWD~~-g~---~i~~l~g-----H~~~V~sla~--dg~~l~ 512 (842)
++ .|+.++.+.+|+.-|++++.. ..++++|+..|+|..||-+ |- ..++... ....|++-.+ .|..|+
T Consensus 346 ~~p~g~f~~nlsgh~~iintl~~nsD~v~~~G~dng~~~fwdwksg~nyQ~~~t~vqpGSl~sEagI~as~fDktg~rli 425 (460)
T KOG0285|consen 346 KLPEGEFLQNLSGHNAIINTLSVNSDGVLVSGGDNGSIMFWDWKSGHNYQRGQTIVQPGSLESEAGIFASCFDKTGSRLI 425 (460)
T ss_pred cCCccchhhccccccceeeeeeeccCceEEEcCCceEEEEEecCcCcccccccccccCCccccccceeEEeecccCceEE
Confidence 99 899999999999999999874 4589999999999999976 42 2222221 1234665555 477899
Q ss_pred EEcCCCCeeecc
Q 003171 513 TLANHGGIRGWN 524 (842)
Q Consensus 513 S~S~DgtIrvWd 524 (842)
|+.+|++|++|.
T Consensus 426 t~eadKtIk~~k 437 (460)
T KOG0285|consen 426 TGEADKTIKMYK 437 (460)
T ss_pred eccCCcceEEEe
Confidence 999999999997
|
|
| >KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.7e-23 Score=234.56 Aligned_cols=370 Identities=15% Similarity=0.188 Sum_probs=249.0
Q ss_pred eEEEEecCCEE--EEe-cCCCEEEEeCCCCccccccccccccCCCCCCCCCCeeeeeecCCCeEEEEEcCCCCEEEEEeC
Q 003171 135 LRTIVCTEEQL--WAG-GENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGHR 211 (842)
Q Consensus 135 ~~~l~~~~~~l--~~~-~D~~vrvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~V~~la~dpdg~~LaSGs~ 211 (842)
+.++....+.+ ..| .||.|++|++.+.. .+++..+| ..+|+|+.||..|..|+|||.
T Consensus 68 vt~l~~~~d~l~lAVGYaDGsVqif~~~s~~-------------------~~~tfngH-K~AVt~l~fd~~G~rlaSGsk 127 (888)
T KOG0306|consen 68 VTCLRSSDDILLLAVGYADGSVQIFSLESEE-------------------ILITFNGH-KAAVTTLKFDKIGTRLASGSK 127 (888)
T ss_pred EEEeeccCCcceEEEEecCceEEeeccCCCc-------------------eeeeeccc-ccceEEEEEcccCceEeecCC
Confidence 44444444433 334 69999999987421 12444566 889999999999999999999
Q ss_pred CCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCCC-EEEeeCCCcEEEEeCCCccceeecCCCce--e----
Q 003171 212 DGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEKALSLKPEER--H---- 284 (842)
Q Consensus 212 DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~~t~~~~l~~~~~~~--~---- 284 (842)
|+.|.+||+-+. .-+..+.||...|+.+.|..+.+ |+|.|.|+.||+||+++..+-.++..+.. +
T Consensus 128 Dt~IIvwDlV~E--------~Gl~rL~GHkd~iT~~~F~~~~~~lvS~sKDs~iK~WdL~tqhCf~Thvd~r~Eiw~l~~ 199 (888)
T KOG0306|consen 128 DTDIIVWDLVGE--------EGLFRLRGHKDSITQALFLNGDSFLVSVSKDSMIKFWDLETQHCFETHVDHRGEIWALVL 199 (888)
T ss_pred CccEEEEEeccc--------eeeEEeecchHHHhHHhccCCCeEEEEeccCceEEEEecccceeeeEEecccceEEEEEE
Confidence 999999999875 45778999999999999998555 78999999999999987442111100000 0
Q ss_pred -----------------------------------------------eeEEEEeec--e---------------------
Q 003171 285 -----------------------------------------------TAALIVERS--Y--------------------- 294 (842)
Q Consensus 285 -----------------------------------------------~~~l~~~~s--~--------------------- 294 (842)
...+....+ +
T Consensus 200 ~~~~lvt~~~dse~~v~~L~~~~D~~~~~~~~s~~~~G~~~rqsk~R~i~l~~d~s~r~~~c~g~d~~~e~frI~s~~E~ 279 (888)
T KOG0306|consen 200 DEKLLVTAGTDSELKVWELAFEDDEKETNRYISTKLRGTFIRQSKGREINLVTDFSDRFLVCQGADKVIELFRIRSKEEI 279 (888)
T ss_pred ecceEEEEecCCceEEEEeecccccccccccceeeccceeeeccCCceeEEeecCcccEEEEecchhhhhheeecCHHHH
Confidence 000000000 0
Q ss_pred ----------------------------------------------eec-ccceec--------cceee-----------
Q 003171 295 ----------------------------------------------IDL-RSHLSV--------NGFSS----------- 308 (842)
Q Consensus 295 ----------------------------------------------~~l-~~~~~~--------~~~~~----------- 308 (842)
+++ .+.... +.++.
T Consensus 280 ~k~l~Kk~k~~Kkka~t~e~~~~v~~sl~~~i~r~~~ir~~~kiks~dv~~~~~~~~~lv~l~nNtv~~ysl~~s~~~~p 359 (888)
T KOG0306|consen 280 AKILSKKLKRAKKKAETEENEDDVEKSLSDEIKRLETIRTSAKIKSFDVTPSGGTENTLVLLANNTVEWYSLENSGKTSP 359 (888)
T ss_pred HHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHheechhheeEEEEEecCCcceeEEEeecCceEEEEeccCCCCCc
Confidence 000 000000 00000
Q ss_pred -----------eecCCEEEEEEcCCCCEEEEeCCCcEEEEEccCCcEEEEeecCCceEeeeecccCCCccc--ccceEEE
Q 003171 309 -----------ILTSDIKNLLSDHSRAKVWSAGFLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAM--EDEFKTK 375 (842)
Q Consensus 309 -----------~~s~~v~~las~~~~~~v~s~s~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~~~--~~~~~~~ 375 (842)
.+-++|+.++++.+...++|++...|++|+..|.+|++++... .+..+ .|-+....-+ ....++.
T Consensus 360 ~~~~~~~i~~~GHR~dVRsl~vS~d~~~~~Sga~~SikiWn~~t~kciRTi~~~-y~l~~-~Fvpgd~~Iv~G~k~Gel~ 437 (888)
T KOG0306|consen 360 EADRTSNIEIGGHRSDVRSLCVSSDSILLASGAGESIKIWNRDTLKCIRTITCG-YILAS-KFVPGDRYIVLGTKNGELQ 437 (888)
T ss_pred cccccceeeeccchhheeEEEeecCceeeeecCCCcEEEEEccCcceeEEeccc-cEEEE-EecCCCceEEEeccCCceE
Confidence 0124688888888888888888889999999999999987532 11111 1111000000 0000000
Q ss_pred EE---ec------CCCCccceeeeEeecCcceEEecCCcEEEEee-----c--Cc-----------cccCCCceEEEEEC
Q 003171 376 IV---TS------SKKDKAQSSFGFFQRSRNAIMGAADAVRRVAA-----K--GG-----------FGDDNRRTEALTTS 428 (842)
Q Consensus 376 ~~---s~------~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~-----~--g~-----------~~~~~~~v~al~~s 428 (842)
++ +. ...+.+.-++...+++...++|++|.+.+.|. . |+ ..+-...|.++.+|
T Consensus 438 vfdlaS~~l~Eti~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~S 517 (888)
T KOG0306|consen 438 VFDLASASLVETIRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVS 517 (888)
T ss_pred EEEeehhhhhhhhhccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEc
Confidence 00 00 01233344556666677778888888777765 1 11 11223567889999
Q ss_pred CCCc-EEEEeCCCeEEEEcC-CCCeeeeeecCCccEEEE--EecCCEEEEEecCcEEEEEeCC-CcccccccccccCEEE
Q 003171 429 IDGM-IWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQCL--CTFGSQIWVGYMNGIVQVLDLE-GNLLGGWVAHSSPVIK 503 (842)
Q Consensus 429 ~dg~-l~Sgs~DgtIrlWD~-~g~~l~~l~~H~~~V~sl--s~dG~~LasGs~DgtIrlWD~~-g~~i~~l~gH~~~V~s 503 (842)
|||+ |+.+=-|+||+++-+ +-+..-.+.||.-||.|+ ++|++.|++||.|++|++|-+. |.|.+++-+|.+.|.+
T Consensus 518 pdgk~LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~DSklivTgSADKnVKiWGLdFGDCHKS~fAHdDSvm~ 597 (888)
T KOG0306|consen 518 PDGKLLAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGDCHKSFFAHDDSVMS 597 (888)
T ss_pred CCCcEEEEEeccCeEEEEEecceeeeeeecccccceeEEeccCCcCeEEeccCCCceEEeccccchhhhhhhcccCceeE
Confidence 9999 566668999999999 567777888999999997 7899999999999999999999 9999999999999999
Q ss_pred EEe--CCCEEEEEcCCCCeeeccccCCCCCcch
Q 003171 504 MAV--GAGYIFTLANHGGIRGWNVTSPGPLDSI 534 (842)
Q Consensus 504 la~--dg~~l~S~S~DgtIrvWd~~~~~~~d~~ 534 (842)
|.+ ....++|+|.|+.||-||-..+..+..+
T Consensus 598 V~F~P~~~~FFt~gKD~kvKqWDg~kFe~iq~L 630 (888)
T KOG0306|consen 598 VQFLPKTHLFFTCGKDGKVKQWDGEKFEEIQKL 630 (888)
T ss_pred EEEcccceeEEEecCcceEEeechhhhhhheee
Confidence 985 4456889999999999997665554443
|
|
| >PLN00181 protein SPA1-RELATED; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.4e-23 Score=258.43 Aligned_cols=275 Identities=15% Similarity=0.146 Sum_probs=195.8
Q ss_pred ceeEEEEecCC--EEEE-ecCCCEEEEeCCCCccccccccccccCCCCCCCCCCeeeeeecCCCeEEEEEcC-CCCEEEE
Q 003171 133 CFLRTIVCTEE--QLWA-GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDE-ASGVVWS 208 (842)
Q Consensus 133 ~~~~~l~~~~~--~l~~-~~D~~vrvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~V~~la~dp-dg~~LaS 208 (842)
..+.+++.+.+ .+.+ |.|+.|+|||+........ ....|..... +...|.++++++ ++.+|+|
T Consensus 484 ~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~------------~~~~~~~~~~-~~~~v~~l~~~~~~~~~las 550 (793)
T PLN00181 484 NLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGR------------DIHYPVVELA-SRSKLSGICWNSYIKSQVAS 550 (793)
T ss_pred CcEEEEEECCCCCEEEEEeCCCEEEEEECCccccccc------------ccccceEEec-ccCceeeEEeccCCCCEEEE
Confidence 34666776633 4444 6699999999864211110 1111222212 256799999987 4789999
Q ss_pred EeCCCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEec-CCC-EEEeeCCCcEEEEeCCCccceeecCCCceeee
Q 003171 209 GHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISS-YGD-LWSGSEGGGIKIWPWEAIEKALSLKPEERHTA 286 (842)
Q Consensus 209 Gs~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~-dG~-L~SgS~DgtIrvWd~~t~~~~l~~~~~~~~~~ 286 (842)
|+.||+|++||+.++ +.+..+.+|.+.|++|+|+| ++. |+|||.|++|++||+.++.....+.
T Consensus 551 ~~~Dg~v~lWd~~~~--------~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~------- 615 (793)
T PLN00181 551 SNFEGVVQVWDVARS--------QLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIK------- 615 (793)
T ss_pred EeCCCeEEEEECCCC--------eEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEe-------
Confidence 999999999999986 67788899999999999997 666 7899999999999997643211110
Q ss_pred EEEEeeceeecccceeccceeeeecCCEEEEEE-cCCCCEEEEeC-CCcEEEEEccCCcE-EEEeecCCceEeeeecccC
Q 003171 287 ALIVERSYIDLRSHLSVNGFSSILTSDIKNLLS-DHSRAKVWSAG-FLSFALWDARTREL-LKVFNIDGQIENRVDMSLL 363 (842)
Q Consensus 287 ~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las-~~~~~~v~s~s-~~tI~lWD~~tg~~-l~~l~~~~~~~~~~~~s~~ 363 (842)
. ...+.++.+ .+++..+++++ +++|++||++++.. +.++
T Consensus 616 ------------~-----------~~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~--------------- 657 (793)
T PLN00181 616 ------------T-----------KANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTM--------------- 657 (793)
T ss_pred ------------c-----------CCCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEe---------------
Confidence 0 123445555 34566777776 67999999876431 1111
Q ss_pred CCcccccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEeecCccccCCCceEEEEECCCCcEEEEeCCCeEE
Q 003171 364 PDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGMIWTGGANGLLL 443 (842)
Q Consensus 364 ~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~al~~s~dg~l~Sgs~DgtIr 443 (842)
..|...|.++.|.++..+++++.|++|+
T Consensus 658 ----------------------------------------------------~~h~~~V~~v~f~~~~~lvs~s~D~~ik 685 (793)
T PLN00181 658 ----------------------------------------------------IGHSKTVSYVRFVDSSTLVSSSTDNTLK 685 (793)
T ss_pred ----------------------------------------------------cCCCCCEEEEEEeCCCEEEEEECCCEEE
Confidence 1233345566676555689999999999
Q ss_pred EEcCC-------CCeeeeeecCCccEEEEE--ecCCEEEEEecCcEEEEEeCC-Ccccc-------------cccccccC
Q 003171 444 QWDPN-------GNRLQDFQYLPFAVQCLC--TFGSQIWVGYMNGIVQVLDLE-GNLLG-------------GWVAHSSP 500 (842)
Q Consensus 444 lWD~~-------g~~l~~l~~H~~~V~sls--~dG~~LasGs~DgtIrlWD~~-g~~i~-------------~l~gH~~~ 500 (842)
+||+. +++++++.+|...+++++ ++|.+|++|+.|++|+||+.. ...+. ....|...
T Consensus 686 iWd~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~ 765 (793)
T PLN00181 686 LWDLSMSISGINETPLHSFMGHTNVKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQF 765 (793)
T ss_pred EEeCCCCccccCCcceEEEcCCCCCeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCcE
Confidence 99983 257889999999888775 468899999999999999975 22211 12345667
Q ss_pred EEEEEe--CCCEEEEEcCCCCeeeccc
Q 003171 501 VIKMAV--GAGYIFTLANHGGIRGWNV 525 (842)
Q Consensus 501 V~sla~--dg~~l~S~S~DgtIrvWd~ 525 (842)
|.++++ ++..+++|+.||+|++|++
T Consensus 766 V~~v~ws~~~~~lva~~~dG~I~i~~~ 792 (793)
T PLN00181 766 ISSVCWRGQSSTLVAANSTGNIKILEM 792 (793)
T ss_pred EEEEEEcCCCCeEEEecCCCcEEEEec
Confidence 999885 6789999999999999985
|
|
| >KOG0295 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.93 E-value=4.3e-24 Score=222.95 Aligned_cols=266 Identities=15% Similarity=0.165 Sum_probs=205.0
Q ss_pred ecCCCEEEEeCCCCccccccccccccCCCCCCCCCCeeeeeecCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCC
Q 003171 148 GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDS 227 (842)
Q Consensus 148 ~~D~~vrvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~V~~la~dpdg~~LaSGs~DGtIrlWdl~~g~~~~ 227 (842)
+.|.+|++||..++..... ++ .| +.+|..++|+..|++|+|+|.|-.+++||.++-
T Consensus 127 s~d~tikv~D~~tg~~e~~-----------------Lr--GH-t~sv~di~~~a~Gk~l~tcSsDl~~~LWd~~~~---- 182 (406)
T KOG0295|consen 127 SEDATIKVFDTETGELERS-----------------LR--GH-TDSVFDISFDASGKYLATCSSDLSAKLWDFDTF---- 182 (406)
T ss_pred cCCceEEEEEccchhhhhh-----------------hh--cc-ccceeEEEEecCccEEEecCCccchhheeHHHH----
Confidence 4699999999988654211 22 23 678999999999999999999999999999874
Q ss_pred CCCcceeEEecccCCcEEEEEEecCCC-EEEeeCCCcEEEEeCCCccceeecCCCceeeeEEEEeeceeecccceeccce
Q 003171 228 DDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGF 306 (842)
Q Consensus 228 ~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~~t~~~~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~ 306 (842)
++++..+.||.-.|.+++|-|.|. ++|+|.|.|||.|+++++.+..++.++.
T Consensus 183 ---~~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t~~~h~------------------------ 235 (406)
T KOG0295|consen 183 ---FRCIKSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVKTFPGHS------------------------ 235 (406)
T ss_pred ---HHHHHHhcCcccceeeEEEEecCCeeeecccccceeEEecccceeEEeccCch------------------------
Confidence 377888999999999999999997 8999999999999999987665554432
Q ss_pred eeeecCCEEEEEEcCCCCEEEEeC-CCcEEEEEccCCcEEEEeecCCceEeeeecccCCCcccccceEEEEEecCCCCcc
Q 003171 307 SSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKA 385 (842)
Q Consensus 307 ~~~~s~~v~~las~~~~~~v~s~s-~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~ 385 (842)
.-++.+....+|..+++++ +.++++|-+.+++|...|..|..+...+.+.+....+- +. ...+. .+
T Consensus 236 -----ewvr~v~v~~DGti~As~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~---i~--~at~~-~~-- 302 (406)
T KOG0295|consen 236 -----EWVRMVRVNQDGTIIASCSNDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPS---IS--EATGS-TN-- 302 (406)
T ss_pred -----HhEEEEEecCCeeEEEecCCCceEEEEEeccchhhhhhhccccceEEEEecccccCcc---hh--hccCC-CC--
Confidence 2355666666677777766 68999999999998888888777554444433221110 00 00000 00
Q ss_pred ceeeeEeecCcceEEecCCcEEEEee--cC----ccccCCCceEEEEECCCCc-EEEEeCCCeEEEEcC-CCCeeeeeec
Q 003171 386 QSSFGFFQRSRNAIMGAADAVRRVAA--KG----GFGDDNRRTEALTTSIDGM-IWTGGANGLLLQWDP-NGNRLQDFQY 457 (842)
Q Consensus 386 ~~s~~~~~~~~~~~~g~~~~v~~v~~--~g----~~~~~~~~v~al~~s~dg~-l~Sgs~DgtIrlWD~-~g~~l~~l~~ 457 (842)
.+.....++.|...++|. .| ++.+|...|..++|+|.|+ |+|+..|+++++||+ +++|.+++..
T Consensus 303 --------~~~~l~s~SrDktIk~wdv~tg~cL~tL~ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~a 374 (406)
T KOG0295|consen 303 --------GGQVLGSGSRDKTIKIWDVSTGMCLFTLVGHDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLEA 374 (406)
T ss_pred --------CccEEEeecccceEEEEeccCCeEEEEEecccceeeeeEEcCCCeEEEEEecCCcEEEEEeccceeeeccCC
Confidence 012345666777777765 23 4668999999999999998 899999999999999 7999999999
Q ss_pred CCccEEEEEec--CCEEEEEecCcEEEEEe
Q 003171 458 LPFAVQCLCTF--GSQIWVGYMNGIVQVLD 485 (842)
Q Consensus 458 H~~~V~sls~d--G~~LasGs~DgtIrlWD 485 (842)
|..-|+++.++ -.++++|+.|.++++|.
T Consensus 375 h~hfvt~lDfh~~~p~VvTGsVdqt~KvwE 404 (406)
T KOG0295|consen 375 HEHFVTSLDFHKTAPYVVTGSVDQTVKVWE 404 (406)
T ss_pred CcceeEEEecCCCCceEEeccccceeeeee
Confidence 99999999875 45999999999999996
|
|
| >KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.3e-25 Score=233.97 Aligned_cols=263 Identities=22% Similarity=0.245 Sum_probs=208.2
Q ss_pred EecCCEEEEec-CCCEEEEeCCCCccccccccccccCCCCCCCCCCeeeeeecCCCeEEEEEcCCCCEEEEEeCCCcEEE
Q 003171 139 VCTEEQLWAGG-ENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGHRDGRIMC 217 (842)
Q Consensus 139 ~~~~~~l~~~~-D~~vrvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~V~~la~dpdg~~LaSGs~DGtIrl 217 (842)
+.++++|..|+ -|.+-+||........+ ...| .++|.++.++++|.+++||+.||.||.
T Consensus 105 tPeGRRLltgs~SGEFtLWNg~~fnFEti-------------------lQaH-Ds~Vr~m~ws~~g~wmiSgD~gG~iKy 164 (464)
T KOG0284|consen 105 TPEGRRLLTGSQSGEFTLWNGTSFNFETI-------------------LQAH-DSPVRTMKWSHNGTWMISGDKGGMIKY 164 (464)
T ss_pred cCCCceeEeecccccEEEecCceeeHHHH-------------------hhhh-cccceeEEEccCCCEEEEcCCCceEEe
Confidence 34577888765 57999999854332222 1234 889999999999999999999999999
Q ss_pred EECCCCccCCCCCcceeEEecccC-CcEEEEEEecCC-CEEEeeCCCcEEEEeCCCccceeecCCCceeeeEEEEeecee
Q 003171 218 WKMNARLLDSDDGFGEVLSWQAHR-GPVLSLCISSYG-DLWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYI 295 (842)
Q Consensus 218 Wdl~~g~~~~~~~~~~~~~l~gH~-~~V~slafs~dG-~L~SgS~DgtIrvWd~~t~~~~l~~~~~~~~~~~l~~~~s~~ 295 (842)
|+.+- ..++..++|. ..|++|+|||+. +++|+|+||+|||||..-.+....
T Consensus 165 Wqpnm---------nnVk~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~v------------------ 217 (464)
T KOG0284|consen 165 WQPNM---------NNVKIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERV------------------ 217 (464)
T ss_pred cccch---------hhhHHhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhhe------------------
Confidence 99776 3456667765 999999999965 489999999999999854221111
Q ss_pred ecccceeccceeeeecCCEEEEEEcCCCCEEEEeC-CCcEEEEEccCCcEEEEeecCCceEeeeecccCCCcccccceEE
Q 003171 296 DLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKT 374 (842)
Q Consensus 296 ~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s-~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~ 374 (842)
|+|| .-+|+++.=.+....|++++ |..|++||.++|.|+.++.+|
T Consensus 218 -L~GH----------gwdVksvdWHP~kgLiasgskDnlVKlWDprSg~cl~tlh~H----------------------- 263 (464)
T KOG0284|consen 218 -LRGH----------GWDVKSVDWHPTKGLIASGSKDNLVKLWDPRSGSCLATLHGH----------------------- 263 (464)
T ss_pred -eccC----------CCCcceeccCCccceeEEccCCceeEeecCCCcchhhhhhhc-----------------------
Confidence 2334 44678888888888899988 568999999999997665433
Q ss_pred EEEecCCCCccceeeeEeecCcceEEecCCcEEEEeecCccccCCCceEEEEECCCCc-EEEEeCCCeEEEEcC-CCCee
Q 003171 375 KIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGM-IWTGGANGLLLQWDP-NGNRL 452 (842)
Q Consensus 375 ~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~al~~s~dg~-l~Sgs~DgtIrlWD~-~g~~l 452 (842)
...|.++.|++++. |+++|.|.+++++|+ .-+.+
T Consensus 264 --------------------------------------------KntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl 299 (464)
T KOG0284|consen 264 --------------------------------------------KNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKEL 299 (464)
T ss_pred --------------------------------------------cceEEEEEEcCCCCeeEEccCCceEEEEehhHhHHH
Confidence 23455677888877 899999999999999 57889
Q ss_pred eeeecCCccEEEEE--e-cCCEEEEEecCcEEEEEeCC-Ccccc-cccccccCEEEEEe--CCCEEEEEcCCCCeeeccc
Q 003171 453 QDFQYLPFAVQCLC--T-FGSQIWVGYMNGIVQVLDLE-GNLLG-GWVAHSSPVIKMAV--GAGYIFTLANHGGIRGWNV 525 (842)
Q Consensus 453 ~~l~~H~~~V~sls--~-dG~~LasGs~DgtIrlWD~~-g~~i~-~l~gH~~~V~sla~--dg~~l~S~S~DgtIrvWd~ 525 (842)
+++++|...|+++. | ....+.+|+.||.|..|.+. .+.+. .-.+|...|++++. =|..|+|||.|.++|+|.-
T Consensus 300 ~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~~~i~~AHd~~iwsl~~hPlGhil~tgsnd~t~rfw~r 379 (464)
T KOG0284|consen 300 FTYRGHKKDVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEEPLGEIPPAHDGEIWSLAYHPLGHILATGSNDRTVRFWTR 379 (464)
T ss_pred HHhhcchhhheeeccccccccceeeccCCCceEEEeccccccccCCCcccccceeeeeccccceeEeecCCCcceeeecc
Confidence 99999999999995 4 35689999999999999987 44444 44699999999995 5778999999999999974
Q ss_pred c
Q 003171 526 T 526 (842)
Q Consensus 526 ~ 526 (842)
.
T Consensus 380 ~ 380 (464)
T KOG0284|consen 380 N 380 (464)
T ss_pred C
Confidence 3
|
|
| >cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto | Back alignment and domain information |
|---|
Probab=99.93 E-value=6.8e-23 Score=215.18 Aligned_cols=266 Identities=21% Similarity=0.329 Sum_probs=203.1
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCCC-EEEeeCCCcEEEEeC
Q 003171 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPW 269 (842)
Q Consensus 191 ~~~V~~la~dpdg~~LaSGs~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~ 269 (842)
.++|.|+.++|++++|++|+.||.|++|++.++ .....+.+|...|.++.|+|+++ |++++.|+.|++|++
T Consensus 9 ~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~--------~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~ 80 (289)
T cd00200 9 TGGVTCVAFSPDGKLLATGSGDGTIKVWDLETG--------ELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDL 80 (289)
T ss_pred CCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCC--------CcEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEc
Confidence 779999999999999999999999999999886 45677889999999999999995 889999999999999
Q ss_pred CCccceeecCCCceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcCCCCEEEEeC-CCcEEEEEccCCcEEEEe
Q 003171 270 EAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVF 348 (842)
Q Consensus 270 ~t~~~~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s-~~tI~lWD~~tg~~l~~l 348 (842)
.+.+....+.. + ...+.++...+.+..+++++ ++.+++||+.+++.+..+
T Consensus 81 ~~~~~~~~~~~-------------------~----------~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 131 (289)
T cd00200 81 ETGECVRTLTG-------------------H----------TSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTL 131 (289)
T ss_pred CcccceEEEec-------------------c----------CCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEe
Confidence 76422211110 1 22466677776667777777 789999999988887777
Q ss_pred ecCCceEeeeecccCCCcccccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEee-c-----CccccCCCce
Q 003171 349 NIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAA-K-----GGFGDDNRRT 422 (842)
Q Consensus 349 ~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~-~-----g~~~~~~~~v 422 (842)
..+......+.+.+ .+..++.+..++..+++. . ..+..+...+
T Consensus 132 ~~~~~~i~~~~~~~-------------------------------~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i 180 (289)
T cd00200 132 RGHTDWVNSVAFSP-------------------------------DGTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEV 180 (289)
T ss_pred ccCCCcEEEEEEcC-------------------------------cCCEEEEEcCCCcEEEEEccccccceeEecCcccc
Confidence 64433222222222 222223333233333322 1 1233455678
Q ss_pred EEEEECCCC-cEEEEeCCCeEEEEcC-CCCeeeeeecCCccEEEEEe--cCCEEEEEecCcEEEEEeCC-Cccccccccc
Q 003171 423 EALTTSIDG-MIWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQCLCT--FGSQIWVGYMNGIVQVLDLE-GNLLGGWVAH 497 (842)
Q Consensus 423 ~al~~s~dg-~l~Sgs~DgtIrlWD~-~g~~l~~l~~H~~~V~sls~--dG~~LasGs~DgtIrlWD~~-g~~i~~l~gH 497 (842)
.++.+++++ .+++++.|+.|++||. .++.+..+..|...|.++.+ ++.++++++.|+.|++||+. ++.+..+.+|
T Consensus 181 ~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~ 260 (289)
T cd00200 181 NSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLSGH 260 (289)
T ss_pred ceEEECCCcCEEEEecCCCcEEEEECCCCceecchhhcCCceEEEEEcCCCcEEEEEcCCCcEEEEEcCCceeEEEcccc
Confidence 899999999 4888888999999999 58888888889999999875 46788888789999999987 7788888899
Q ss_pred ccCEEEEEe--CCCEEEEEcCCCCeeecc
Q 003171 498 SSPVIKMAV--GAGYIFTLANHGGIRGWN 524 (842)
Q Consensus 498 ~~~V~sla~--dg~~l~S~S~DgtIrvWd 524 (842)
...|.++.+ ++..+++++.|+.|++|+
T Consensus 261 ~~~i~~~~~~~~~~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 261 TNSVTSLAWSPDGKRLASGSADGTIRIWD 289 (289)
T ss_pred CCcEEEEEECCCCCEEEEecCCCeEEecC
Confidence 999999885 558999999999999996
|
|
| >KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.92 E-value=6.3e-24 Score=240.68 Aligned_cols=299 Identities=13% Similarity=0.202 Sum_probs=236.7
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCCC-EEEeeCCCcEEEEeC
Q 003171 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPW 269 (842)
Q Consensus 191 ~~~V~~la~dpdg~~LaSGs~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~ 269 (842)
++.|..++|.|.--+|.++...|.|++||..-+ .++..|.+|.+||..|+|+|.+- ++||++|..||||+.
T Consensus 9 SsRvKglsFHP~rPwILtslHsG~IQlWDYRM~--------tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnY 80 (1202)
T KOG0292|consen 9 SSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMG--------TLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNY 80 (1202)
T ss_pred cccccceecCCCCCEEEEeecCceeeeehhhhh--------hHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEec
Confidence 456888999999999999999999999998776 57788999999999999999987 579999999999999
Q ss_pred CCccceeecCCCceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcCCCCEEEEeCC-CcEEEEEccCCcEEEEe
Q 003171 270 EAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGF-LSFALWDARTRELLKVF 348 (842)
Q Consensus 270 ~t~~~~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s~-~tI~lWD~~tg~~l~~l 348 (842)
.+..+.+++.+ | -..|+.+.+.+.-..|.|++| +||+||+..+++|+.++
T Consensus 81 k~rrclftL~G-------------------H----------lDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~iavl 131 (1202)
T KOG0292|consen 81 KTRRCLFTLLG-------------------H----------LDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAVL 131 (1202)
T ss_pred ccceehhhhcc-------------------c----------cceeEEeeccCCCceEEEccCCCeEEEEeccCCceEEEE
Confidence 77555554433 2 235777888887788888885 79999999999999999
Q ss_pred ecCCceEeeeecccC----CCcccccceEEEEEecCCCCccceeeeEee--cCcc---eEEecCCcEEEEeecCccccCC
Q 003171 349 NIDGQIENRVDMSLL----PDFAMEDEFKTKIVTSSKKDKAQSSFGFFQ--RSRN---AIMGAADAVRRVAAKGGFGDDN 419 (842)
Q Consensus 349 ~~~~~~~~~~~~s~~----~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~--~~~~---~~~g~~~~v~~v~~~g~~~~~~ 419 (842)
.+|.+.+....|.+. ...+.|+++|+|..++.++...... ++.+ .+.+ -+.|..|.|... .+.+|.
T Consensus 132 tGHnHYVMcAqFhptEDlIVSaSLDQTVRVWDisGLRkk~~~pg-~~e~~~~~~~~~~dLfg~~DaVVK~----VLEGHD 206 (1202)
T KOG0292|consen 132 TGHNHYVMCAQFHPTEDLIVSASLDQTVRVWDISGLRKKNKAPG-SLEDQMRGQQGNSDLFGQTDAVVKH----VLEGHD 206 (1202)
T ss_pred ecCceEEEeeccCCccceEEEecccceEEEEeecchhccCCCCC-CchhhhhccccchhhcCCcCeeeee----eecccc
Confidence 999998777777663 4456788889888887754332211 1111 1111 144555555443 367899
Q ss_pred CceEEEEECCCC-cEEEEeCCCeEEEEcC-CCC--eeeeeecCCccEEEEEecC--CEEEEEecCcEEEEEeCC-Ccccc
Q 003171 420 RRTEALTTSIDG-MIWTGGANGLLLQWDP-NGN--RLQDFQYLPFAVQCLCTFG--SQIWVGYMNGIVQVLDLE-GNLLG 492 (842)
Q Consensus 420 ~~v~al~~s~dg-~l~Sgs~DgtIrlWD~-~g~--~l~~l~~H~~~V~sls~dG--~~LasGs~DgtIrlWD~~-g~~i~ 492 (842)
..|...+|.|.- .++||+.|..||+|.. +.+ .+.+..||.+.|.|+-+++ ..|.|.|.|++|||||++ .+.++
T Consensus 207 RGVNwaAfhpTlpliVSG~DDRqVKlWrmnetKaWEvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kRt~v~ 286 (1202)
T KOG0292|consen 207 RGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKRTSVQ 286 (1202)
T ss_pred cccceEEecCCcceEEecCCcceeeEEEeccccceeehhhhcccCCcceEEecCccceeEecCCCccEEEEeccccccee
Confidence 999999998854 4799999999999999 343 4667889999999998887 599999999999999998 56799
Q ss_pred cccccccCEEEEEeCCCE-EEEEcCCCCeeeccccCCCCC
Q 003171 493 GWVAHSSPVIKMAVGAGY-IFTLANHGGIRGWNVTSPGPL 531 (842)
Q Consensus 493 ~l~gH~~~V~sla~dg~~-l~S~S~DgtIrvWd~~~~~~~ 531 (842)
+++--.+.-|.|+..+.. |+.++.|+++.++.+..-.|.
T Consensus 287 tfrrendRFW~laahP~lNLfAAgHDsGm~VFkleRErpa 326 (1202)
T KOG0292|consen 287 TFRRENDRFWILAAHPELNLFAAGHDSGMIVFKLERERPA 326 (1202)
T ss_pred eeeccCCeEEEEEecCCcceeeeecCCceEEEEEcccCce
Confidence 998888899999987664 778999999999998754443
|
|
| >KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.3e-22 Score=225.51 Aligned_cols=360 Identities=16% Similarity=0.228 Sum_probs=247.4
Q ss_pred EEEEecCC--EEEEecCCCEEEEeCCCCccccccccccccCCCCCCCCCCeeeeee---cCCCeEEEEEcCCCCEEEEEe
Q 003171 136 RTIVCTEE--QLWAGGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVK---GVSSVMCMVGDEASGVVWSGH 210 (842)
Q Consensus 136 ~~l~~~~~--~l~~~~D~~vrvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---g~~~V~~la~dpdg~~LaSGs 210 (842)
.+|..+.+ .+.++..+-+.||-..... + +.-.||..+.. +...|.++.|+.|.++|++||
T Consensus 100 ~~i~fSPng~~fav~~gn~lqiw~~P~~~-------------~--~~~~pFvl~r~~~g~fddi~si~Ws~DSr~l~~gs 164 (893)
T KOG0291|consen 100 GAIKFSPNGKFFAVGCGNLLQIWHAPGEI-------------K--NEFNPFVLHRTYLGHFDDITSIDWSDDSRLLVTGS 164 (893)
T ss_pred ceEEECCCCcEEEEEecceeEEEecCcch-------------h--cccCcceEeeeecCCccceeEEEeccCCceEEecc
Confidence 34444433 4444777889999763311 1 13456644311 167899999999999999999
Q ss_pred CCCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCCC-EEEeeCCCcEEEEeCCCccceeec-----------
Q 003171 211 RDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEKALSL----------- 278 (842)
Q Consensus 211 ~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~~t~~~~l~~----------- 278 (842)
.|-++|+|.+..-. + -....+.||+++|-+..|..+.. |+|-|.||.|.+|..+.......-
T Consensus 165 rD~s~rl~~v~~~k----~--~~~~~l~gHkd~VvacfF~~~~~~l~tvskdG~l~~W~~~~~P~~~~~~~kd~eg~~d~ 238 (893)
T KOG0291|consen 165 RDLSARLFGVDGNK----N--LFTYALNGHKDYVVACFFGANSLDLYTVSKDGALFVWTCDLRPPELDKAEKDEEGSDDE 238 (893)
T ss_pred ccceEEEEEecccc----c--cceEeccCCCcceEEEEeccCcceEEEEecCceEEEEEecCCCcccccccccccccccc
Confidence 99999999998741 1 12456889999999999999886 999999999999987631100000
Q ss_pred ----CCCceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcCCCCEEEEeCC-CcEEEEEccCCcEEEEeecCCc
Q 003171 279 ----KPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGF-LSFALWDARTRELLKVFNIDGQ 353 (842)
Q Consensus 279 ----~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s~-~tI~lWD~~tg~~l~~l~~~~~ 353 (842)
..++ .+... .+...+-| .+.-.+.++++..+......|+.+-. +.+.|+.+-.-.++..+....+
T Consensus 239 ~~~~~~Ee-k~~~~----~~~k~~k~-----~ln~~~~kvtaa~fH~~t~~lvvgFssG~f~LyelP~f~lih~LSis~~ 308 (893)
T KOG0291|consen 239 EMDEDGEE-KTHKI----FWYKTKKH-----YLNQNSSKVTAAAFHKGTNLLVVGFSSGEFGLYELPDFNLIHSLSISDQ 308 (893)
T ss_pred cccccchh-hhcce----EEEEEEee-----eecccccceeeeeccCCceEEEEEecCCeeEEEecCCceEEEEeecccc
Confidence 0000 00000 00000000 01111256777777666666666543 5577999999889888877655
Q ss_pred eEeeeecccCCCcccccc-----eEEEEEecC-------CCCccceeeeEeecCcceEEecCCcEEEEeec------Ccc
Q 003171 354 IENRVDMSLLPDFAMEDE-----FKTKIVTSS-------KKDKAQSSFGFFQRSRNAIMGAADAVRRVAAK------GGF 415 (842)
Q Consensus 354 ~~~~~~~s~~~~~~~~~~-----~~~~~~s~~-------~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~------g~~ 415 (842)
.+..+.+....+...-.. ..+|-|... ..-....++..++++..+++|..|+-.++|.. .+|
T Consensus 309 ~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVlKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTF 388 (893)
T KOG0291|consen 309 KILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVLKQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTF 388 (893)
T ss_pred eeeEEEecccCCEEEEcCCccceEEEEEeeccceeeeccccccceeeEEECCCCcEEEeccCCCcEEEEeccCceEEEEe
Confidence 444444443333211000 112223221 11223457888888888899999998888762 367
Q ss_pred ccCCCceEEEEECCCCc-EEEEeCCCeEEEEcC-CCCeeeeeecCCccEE--EEEec--CCEEEEEecCc-EEEEEeCC-
Q 003171 416 GDDNRRTEALTTSIDGM-IWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQ--CLCTF--GSQIWVGYMNG-IVQVLDLE- 487 (842)
Q Consensus 416 ~~~~~~v~al~~s~dg~-l~Sgs~DgtIrlWD~-~g~~l~~l~~H~~~V~--sls~d--G~~LasGs~Dg-tIrlWD~~- 487 (842)
.+|+..|.++.|+..|+ +++.|-||+||.||+ .+++.++|+. ..++. |++.| |..+.+|+.|. .|.||+++
T Consensus 389 teHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft~-P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qT 467 (893)
T KOG0291|consen 389 TEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFTS-PEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQT 467 (893)
T ss_pred ccCCCceEEEEEEecCCEEEEeecCCeEEeeeecccceeeeecC-CCceeeeEEEEcCCCCEEEeeccceEEEEEEEeec
Confidence 88999999999999988 789999999999999 7899999986 34444 67766 88888888764 89999987
Q ss_pred CcccccccccccCEEEEE--eCCCEEEEEcCCCCeeeccccC
Q 003171 488 GNLLGGWVAHSSPVIKMA--VGAGYIFTLANHGGIRGWNVTS 527 (842)
Q Consensus 488 g~~i~~l~gH~~~V~sla--~dg~~l~S~S~DgtIrvWd~~~ 527 (842)
|+++..+.||.++|.+++ ++++.|+|+|+|+|||+||+-.
T Consensus 468 GqllDiLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~ 509 (893)
T KOG0291|consen 468 GQLLDILSGHEGPVSGLSFSPDGSLLASGSWDKTVRIWDIFS 509 (893)
T ss_pred CeeeehhcCCCCcceeeEEccccCeEEeccccceEEEEEeec
Confidence 899999999999999876 6899999999999999999744
|
|
| >KOG0286 consensus G-protein beta subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.4e-23 Score=211.96 Aligned_cols=239 Identities=18% Similarity=0.255 Sum_probs=185.3
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCCC-EEEeeCCCcEEEEeC
Q 003171 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPW 269 (842)
Q Consensus 191 ~~~V~~la~dpdg~~LaSGs~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~ 269 (842)
.+.|+|+-+++|.+.|+|+|.||.+.|||.-+. ...+-+.-...+|..+||+|.|+ ++.|+-|+..-|+++
T Consensus 55 ~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~Tt--------nK~haipl~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~l 126 (343)
T KOG0286|consen 55 LNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTT--------NKVHAIPLPSSWVMTCAYSPSGNFVACGGLDNKCSIYPL 126 (343)
T ss_pred ccceeeeEecCCcCeEEeeccCCeEEEEEcccc--------cceeEEecCceeEEEEEECCCCCeEEecCcCceeEEEec
Confidence 779999999999999999999999999998886 34444455578999999999999 578999999999999
Q ss_pred CCccceeecCCCceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcCCCCEEEEeCCCcEEEEEccCCcEEEEee
Q 003171 270 EAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGFLSFALWDARTRELLKVFN 349 (842)
Q Consensus 270 ~t~~~~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s~~tI~lWD~~tg~~l~~l~ 349 (842)
.+....... .+ . ..+.+| .+.+.+..+-+++..|-+++|.|..+||+++|+.+..|.
T Consensus 127 s~~d~~g~~-----~v-----~---r~l~gH----------tgylScC~f~dD~~ilT~SGD~TCalWDie~g~~~~~f~ 183 (343)
T KOG0286|consen 127 STRDAEGNV-----RV-----S---RELAGH----------TGYLSCCRFLDDNHILTGSGDMTCALWDIETGQQTQVFH 183 (343)
T ss_pred ccccccccc-----ee-----e---eeecCc----------cceeEEEEEcCCCceEecCCCceEEEEEcccceEEEEec
Confidence 653211000 00 0 012223 334555556555666666668999999999999877776
Q ss_pred cCCceEeeeecccCCCcccccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEeecCccccCCCceEEEEECC
Q 003171 350 IDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSI 429 (842)
Q Consensus 350 ~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~al~~s~ 429 (842)
+|. ..|.+|.++|
T Consensus 184 GH~-------------------------------------------------------------------gDV~slsl~p 196 (343)
T KOG0286|consen 184 GHT-------------------------------------------------------------------GDVMSLSLSP 196 (343)
T ss_pred CCc-------------------------------------------------------------------ccEEEEecCC
Confidence 543 2344556666
Q ss_pred -CCc-EEEEeCCCeEEEEcC-CCCeeeeeecCCccEEEEE--ecCCEEEEEecCcEEEEEeCC-Ccccccccc--cccCE
Q 003171 430 -DGM-IWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQCLC--TFGSQIWVGYMNGIVQVLDLE-GNLLGGWVA--HSSPV 501 (842)
Q Consensus 430 -dg~-l~Sgs~DgtIrlWD~-~g~~l~~l~~H~~~V~sls--~dG~~LasGs~DgtIrlWD~~-g~~i~~l~g--H~~~V 501 (842)
+++ ++||+.|++.+|||+ .+.|.++|.+|...|+++. |+|.-+++|+.|++.|+||++ .+.+..+.. -..+|
T Consensus 197 ~~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys~~~~~~gi 276 (343)
T KOG0286|consen 197 SDGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQELAVYSHDSIICGI 276 (343)
T ss_pred CCCCeEEecccccceeeeeccCcceeEeecccccccceEEEccCCCeeeecCCCceeEEEeecCCcEEeeeccCcccCCc
Confidence 555 799999999999999 8999999999999999986 589999999999999999997 555665542 23468
Q ss_pred EEEEe--CCCEEEEEcCCCCeeeccccC
Q 003171 502 IKMAV--GAGYIFTLANHGGIRGWNVTS 527 (842)
Q Consensus 502 ~sla~--dg~~l~S~S~DgtIrvWd~~~ 527 (842)
+++++ .|++|+.|..|.++.+||.-.
T Consensus 277 tSv~FS~SGRlLfagy~d~~c~vWDtlk 304 (343)
T KOG0286|consen 277 TSVAFSKSGRLLFAGYDDFTCNVWDTLK 304 (343)
T ss_pred eeEEEcccccEEEeeecCCceeEeeccc
Confidence 88885 799999999999999999543
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.2e-23 Score=231.49 Aligned_cols=269 Identities=17% Similarity=0.221 Sum_probs=200.4
Q ss_pred CCCCCCceeecCCCCCccccCceeEEEEecCCEEEEe-cCCCEEEEeCCCCccccccccccccCCCCCCCCCCeeeeeec
Q 003171 112 HPARPPSLEVKPHPLRETQIGCFLRTIVCTEEQLWAG-GENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKG 190 (842)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~-~D~~vrvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 190 (842)
+++|..++++ ||. +--+.++ ..|.|.+||.++..-... | .+.
T Consensus 12 rSdRVKsVd~--HPt---------------ePw~la~LynG~V~IWnyetqtmVks-----------------f--eV~- 54 (794)
T KOG0276|consen 12 RSDRVKSVDF--HPT---------------EPWILAALYNGDVQIWNYETQTMVKS-----------------F--EVS- 54 (794)
T ss_pred cCCceeeeec--CCC---------------CceEEEeeecCeeEEEecccceeeee-----------------e--eec-
Confidence 7788888888 551 1111222 367999999976543321 1 122
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCCC-EEEeeCCCcEEEEeC
Q 003171 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPW 269 (842)
Q Consensus 191 ~~~V~~la~dpdg~~LaSGs~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~ 269 (842)
.-||.+..|-+.-+++++||.|..||+++.+++ +.+.+|.+|.+.|++|+.+|.-- ++|+|+|-+||+||+
T Consensus 55 ~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt~--------ekV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~w 126 (794)
T KOG0276|consen 55 EVPVRAAKFIARKNWIVTGSDDMQIRVFNYNTG--------EKVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDW 126 (794)
T ss_pred ccchhhheeeeccceEEEecCCceEEEEecccc--------eeeEEeeccccceeeeeecCCCCeEEecCCccEEEEeec
Confidence 558888888888899999999999999999997 78899999999999999999754 789999999999999
Q ss_pred CCc-cceeecCCCceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcCC-CCEEEEeC-CCcEEEEEccCCcEEE
Q 003171 270 EAI-EKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHS-RAKVWSAG-FLSFALWDARTRELLK 346 (842)
Q Consensus 270 ~t~-~~~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~-~~~v~s~s-~~tI~lWD~~tg~~l~ 346 (842)
+.. .+..++. || +.-|..+++.|. ..+.+|++ |+|||+|.+-+..+..
T Consensus 127 e~~wa~~qtfe-------------------GH----------~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~nf 177 (794)
T KOG0276|consen 127 ENEWACEQTFE-------------------GH----------EHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSPHPNF 177 (794)
T ss_pred cCceeeeeEEc-------------------Cc----------ceEEEEEEecCCCccceeeeeccccEEEEEcCCCCCce
Confidence 762 1222222 22 224667777774 45778877 8999999986655544
Q ss_pred EeecCCceEeeeecccCCCcccccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEeecCccccCCCceEEEE
Q 003171 347 VFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALT 426 (842)
Q Consensus 347 ~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~al~ 426 (842)
+|.+| .+.|.++.
T Consensus 178 Tl~gH-------------------------------------------------------------------ekGVN~Vd 190 (794)
T KOG0276|consen 178 TLEGH-------------------------------------------------------------------EKGVNCVD 190 (794)
T ss_pred eeecc-------------------------------------------------------------------ccCcceEE
Confidence 44433 22233333
Q ss_pred ECCCC---cEEEEeCCCeEEEEcC-CCCeeeeeecCCccEEEEEecCC--EEEEEecCcEEEEEeCCC-ccccccccccc
Q 003171 427 TSIDG---MIWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQCLCTFGS--QIWVGYMNGIVQVLDLEG-NLLGGWVAHSS 499 (842)
Q Consensus 427 ~s~dg---~l~Sgs~DgtIrlWD~-~g~~l~~l~~H~~~V~sls~dG~--~LasGs~DgtIrlWD~~g-~~i~~l~gH~~ 499 (842)
+=+.| .|+||+.|.+||+||- +..|++++.||.+.|.++++..+ .|++||.|||+|||+..+ ++..++.---+
T Consensus 191 yy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGHt~Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty~lE~tLn~gle 270 (794)
T KOG0276|consen 191 YYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEGHTNNVSFVFFHPELPIIISGSEDGTVRIWNSKTYKLEKTLNYGLE 270 (794)
T ss_pred eccCCCcceEEecCCCceEEEeecchHHHHHHhhcccccceEEEecCCCcEEEEecCCccEEEecCcceehhhhhhcCCc
Confidence 33333 6999999999999999 78999999999999999988764 899999999999999764 56677777778
Q ss_pred CEEEEE--eCCCEEEEEcCCCCee
Q 003171 500 PVIKMA--VGAGYIFTLANHGGIR 521 (842)
Q Consensus 500 ~V~sla--~dg~~l~S~S~DgtIr 521 (842)
.||+|+ .+...++.|...|.|-
T Consensus 271 RvW~I~~~k~~~~i~vG~Deg~i~ 294 (794)
T KOG0276|consen 271 RVWCIAAHKGDGKIAVGFDEGSVT 294 (794)
T ss_pred eEEEEeecCCCCeEEEeccCCcEE
Confidence 999998 4555666666666553
|
|
| >KOG0645 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.2e-22 Score=205.12 Aligned_cols=260 Identities=16% Similarity=0.193 Sum_probs=196.7
Q ss_pred ecCCCEEEEeCCCCccccccccccccCCCCCCCCCCeeee---eecCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCc
Q 003171 148 GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKES---VKGVSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARL 224 (842)
Q Consensus 148 ~~D~~vrvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~g~~~V~~la~dpdg~~LaSGs~DGtIrlWdl~~g~ 224 (842)
|+|..||+|+...+....| +.. .| ...|.++|++|.|++|++||.|.++-||.-..+
T Consensus 34 g~Dk~vriw~~~~~~s~~c------------------k~vld~~h-krsVRsvAwsp~g~~La~aSFD~t~~Iw~k~~~- 93 (312)
T KOG0645|consen 34 GTDKAVRIWSTSSGDSWTC------------------KTVLDDGH-KRSVRSVAWSPHGRYLASASFDATVVIWKKEDG- 93 (312)
T ss_pred cCCceEEEEecCCCCcEEE------------------EEeccccc-hheeeeeeecCCCcEEEEeeccceEEEeecCCC-
Confidence 6799999999875332223 111 23 779999999999999999999999999987654
Q ss_pred cCCCCCcceeEEecccCCcEEEEEEecCCC-EEEeeCCCcEEEEeCCCccceeecCCCceeeeEEEEeeceeecccceec
Q 003171 225 LDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSV 303 (842)
Q Consensus 225 ~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~~t~~~~l~~~~~~~~~~~l~~~~s~~~l~~~~~~ 303 (842)
.|++..++.||.+.|.+++||++|. |+|+|.|+.|-||..+.... + .+.+ + |..|
T Consensus 94 -----efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddE-f------ec~a-V--------L~~H--- 149 (312)
T KOG0645|consen 94 -----EFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDE-F------ECIA-V--------LQEH--- 149 (312)
T ss_pred -----ceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCc-E------EEEe-e--------eccc---
Confidence 4788999999999999999999998 79999999999999863210 1 0111 1 1122
Q ss_pred cceeeeecCCEEEEEEcCCCCEEEEeC-CCcEEEEEccCCcEEEEeecCCceEeeeecccCCCcccccceEEEEEecCCC
Q 003171 304 NGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKK 382 (842)
Q Consensus 304 ~~~~~~~s~~v~~las~~~~~~v~s~s-~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~ 382 (842)
+.+|+.+...|....|+|++ |.||++|+-..+ ..++ -
T Consensus 150 -------tqDVK~V~WHPt~dlL~S~SYDnTIk~~~~~~d---------ddW~-----------------------c--- 187 (312)
T KOG0645|consen 150 -------TQDVKHVIWHPTEDLLFSCSYDNTIKVYRDEDD---------DDWE-----------------------C--- 187 (312)
T ss_pred -------cccccEEEEcCCcceeEEeccCCeEEEEeecCC---------CCee-----------------------E---
Confidence 56899999999889999999 579999974311 1110 0
Q ss_pred CccceeeeEeecCcceEEecCCcEEEEeecCccccCCCceEEEEECCCC-cEEEEeCCCeEEEEcCC-CCeeeeeecCCc
Q 003171 383 DKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDG-MIWTGGANGLLLQWDPN-GNRLQDFQYLPF 460 (842)
Q Consensus 383 ~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~al~~s~dg-~l~Sgs~DgtIrlWD~~-g~~l~~l~~H~~ 460 (842)
..++.+|...|.+++|.+.| +|++++.|++|++|-.- +-. .-|+.
T Consensus 188 -----------------------------~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~~~~----~~~sr 234 (312)
T KOG0645|consen 188 -----------------------------VQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLYTDLS----GMHSR 234 (312)
T ss_pred -----------------------------EEEecCccceEEEEEecCCCceEEEecCCcceEeeeeccCcc----hhccc
Confidence 00134555677889999988 59999999999999852 210 13677
Q ss_pred cEEEEEecCCEEEEEecCcEEEEEeCCC-------cc-cccccccccCEEEEEeC---CCEEEEEcCCCCeeecccc
Q 003171 461 AVQCLCTFGSQIWVGYMNGIVQVLDLEG-------NL-LGGWVAHSSPVIKMAVG---AGYIFTLANHGGIRGWNVT 526 (842)
Q Consensus 461 ~V~sls~dG~~LasGs~DgtIrlWD~~g-------~~-i~~l~gH~~~V~sla~d---g~~l~S~S~DgtIrvWd~~ 526 (842)
+++.++-....|++|+.|+.|+|+--.. ++ ...-.+|...|++|.++ ++.|+|+|.||.|++|.+.
T Consensus 235 ~~Y~v~W~~~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVNsV~w~p~~~~~L~s~~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 235 ALYDVPWDNGVIASGGGDDAIRLFKESDSPDEPSWNLLAKKEGAHEVDVNSVQWNPKVSNRLASGGDDGIVNFWELE 311 (312)
T ss_pred ceEeeeecccceEeccCCCEEEEEEecCCCCCchHHHHHhhhcccccccceEEEcCCCCCceeecCCCceEEEEEec
Confidence 8888877766899999999999996431 22 34567899999999964 4689999999999999864
|
|
| >KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.5e-23 Score=233.11 Aligned_cols=277 Identities=16% Similarity=0.226 Sum_probs=213.1
Q ss_pred eeEEEEecCCEEE--EecCCCEEEEeCCCCccccccccccccCCCCCCCCCCeeeeeecCCCeEEEEEcCCCCEEEEEeC
Q 003171 134 FLRTIVCTEEQLW--AGGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGHR 211 (842)
Q Consensus 134 ~~~~l~~~~~~l~--~~~D~~vrvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~V~~la~dpdg~~LaSGs~ 211 (842)
-+|++....+.+. ++..+.+++||.++..+... +. .+-+.|..|-|.+++|++|..
T Consensus 375 dVRsl~vS~d~~~~~Sga~~SikiWn~~t~kciRT---------------------i~-~~y~l~~~Fvpgd~~Iv~G~k 432 (888)
T KOG0306|consen 375 DVRSLCVSSDSILLASGAGESIKIWNRDTLKCIRT---------------------IT-CGYILASKFVPGDRYIVLGTK 432 (888)
T ss_pred heeEEEeecCceeeeecCCCcEEEEEccCcceeEE---------------------ec-cccEEEEEecCCCceEEEecc
Confidence 4778877766433 35678999999988665431 22 557899999999999999999
Q ss_pred CCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCCC-EEEeeCCCcEEEEeCCCccceeecCCCceeeeEEEE
Q 003171 212 DGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIV 290 (842)
Q Consensus 212 DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~~t~~~~l~~~~~~~~~~~l~~ 290 (842)
.|.+.++|+... ..+-+.++|.++|++|+.+||++ ++|||.|.|||.||..-.. ......... +.+
T Consensus 433 ~Gel~vfdlaS~--------~l~Eti~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~---~~~gt~~k~--lsl 499 (888)
T KOG0306|consen 433 NGELQVFDLASA--------SLVETIRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVV---SVPGTQKKV--LSL 499 (888)
T ss_pred CCceEEEEeehh--------hhhhhhhccccceeeeeecCCCCceEEecCCcEEEEEeEEEEe---ccCccccee--eee
Confidence 999999999986 44556789999999999999998 9999999999999974210 000000000 100
Q ss_pred eec-eeecccceeccceeeeecCCEEEEEEcCCCCEEEEeC-CCcEEEEEccCCcEEEEeecCCceEeeeecccCCCccc
Q 003171 291 ERS-YIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAM 368 (842)
Q Consensus 291 ~~s-~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s-~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~~~ 368 (842)
... .+. ...++.|+.++|++..++.+- +.|++++-+.|=++--.
T Consensus 500 ~~~rtLe-------------l~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtlKFfls--------------------- 545 (888)
T KOG0306|consen 500 KHTRTLE-------------LEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLKFFLS--------------------- 545 (888)
T ss_pred ccceEEe-------------ccccEEEEEEcCCCcEEEEEeccCeEEEEEecceeeeee---------------------
Confidence 000 001 156788999998887776554 66787776654332111
Q ss_pred ccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEeecCccccCCCceEEEEECCCCc-EEEEeCCCeEEEEcC
Q 003171 369 EDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGM-IWTGGANGLLLQWDP 447 (842)
Q Consensus 369 ~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~al~~s~dg~-l~Sgs~DgtIrlWD~ 447 (842)
+-+|.-+|.++-+|||+. ++|||.|++||+|-+
T Consensus 546 ----------------------------------------------LYGHkLPV~smDIS~DSklivTgSADKnVKiWGL 579 (888)
T KOG0306|consen 546 ----------------------------------------------LYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGL 579 (888)
T ss_pred ----------------------------------------------ecccccceeEEeccCCcCeEEeccCCCceEEecc
Confidence 234555677888999998 789999999999999
Q ss_pred -CCCeeeeeecCCccEEEEEe--cCCEEEEEecCcEEEEEeCC-CcccccccccccCEEEEE--eCCCEEEEEcCCCCee
Q 003171 448 -NGNRLQDFQYLPFAVQCLCT--FGSQIWVGYMNGIVQVLDLE-GNLLGGWVAHSSPVIKMA--VGAGYIFTLANHGGIR 521 (842)
Q Consensus 448 -~g~~l~~l~~H~~~V~sls~--dG~~LasGs~DgtIrlWD~~-g~~i~~l~gH~~~V~sla--~dg~~l~S~S~DgtIr 521 (842)
-|.|-+.|-+|.+.|+++.+ ....+++++.|+.|+-||.+ =.+++++.+|...|++++ ++|++++|+|.|.+||
T Consensus 580 dFGDCHKS~fAHdDSvm~V~F~P~~~~FFt~gKD~kvKqWDg~kFe~iq~L~~H~~ev~cLav~~~G~~vvs~shD~sIR 659 (888)
T KOG0306|consen 580 DFGDCHKSFFAHDDSVMSVQFLPKTHLFFTCGKDGKVKQWDGEKFEEIQKLDGHHSEVWCLAVSPNGSFVVSSSHDKSIR 659 (888)
T ss_pred ccchhhhhhhcccCceeEEEEcccceeEEEecCcceEEeechhhhhhheeeccchheeeeeEEcCCCCeEEeccCCceeE
Confidence 59999999999999999965 44589999999999999987 468999999999999987 6899999999999999
Q ss_pred eccc
Q 003171 522 GWNV 525 (842)
Q Consensus 522 vWd~ 525 (842)
+|.-
T Consensus 660 lwE~ 663 (888)
T KOG0306|consen 660 LWER 663 (888)
T ss_pred eeec
Confidence 9984
|
|
| >KOG0293 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.92 E-value=1e-23 Score=222.52 Aligned_cols=272 Identities=14% Similarity=0.143 Sum_probs=192.5
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCCC-EEEeeCCCcEEEEeC
Q 003171 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPW 269 (842)
Q Consensus 191 ~~~V~~la~dpdg~~LaSGs~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~ 269 (842)
+..|.-+.||++|++|||||+|.|..+|.+... ..++...++.||..+|.-+.||||.+ |++|+.|..+++||+
T Consensus 224 tdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d-----~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv 298 (519)
T KOG0293|consen 224 TDEVWFLQFSHNGKYLASASKDSTAIIWIVVYD-----VHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDV 298 (519)
T ss_pred CCcEEEEEEcCCCeeEeeccCCceEEEEEEecC-----cceeeeeeeecccCceEEEEECCCCCeEEecCchHheeeccC
Confidence 789999999999999999999999999998763 34677889999999999999999987 899999999999999
Q ss_pred CCccceeecCCCceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcCCCCEEEEeC-CCcEEEEEccCCcEEEEe
Q 003171 270 EAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVF 348 (842)
Q Consensus 270 ~t~~~~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s-~~tI~lWD~~tg~~l~~l 348 (842)
.++.....+.. ++ ...+.+.+=.+++..+.+|+ |++|.-||+.. ..+...
T Consensus 299 ~tgd~~~~y~~------------------~~----------~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDg-n~~~~W 349 (519)
T KOG0293|consen 299 DTGDLRHLYPS------------------GL----------GFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDG-NILGNW 349 (519)
T ss_pred Ccchhhhhccc------------------Cc----------CCCcceeEEccCCceeEecCCCCcEEEecCCc-chhhcc
Confidence 88764322211 00 01223334445666666666 67899999853 333332
Q ss_pred ecCCceEeeeecccCCCcccccceEEEEEecCCCCccceeeeEeecCcceEEecCCc-EEEEee----cCccccCCCceE
Q 003171 349 NIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADA-VRRVAA----KGGFGDDNRRTE 423 (842)
Q Consensus 349 ~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~-v~~v~~----~g~~~~~~~~v~ 423 (842)
.+-.. .++.. ++..+++...++-..+. ++.++. .-.+......+.
T Consensus 350 ~gvr~------------------~~v~d------------lait~Dgk~vl~v~~d~~i~l~~~e~~~dr~lise~~~it 399 (519)
T KOG0293|consen 350 EGVRD------------------PKVHD------------LAITYDGKYVLLVTVDKKIRLYNREARVDRGLISEEQPIT 399 (519)
T ss_pred ccccc------------------ceeEE------------EEEcCCCcEEEEEecccceeeechhhhhhhccccccCcee
Confidence 21100 00000 11111111111111111 111111 111344567889
Q ss_pred EEEECCCCcEE-EEeCCCeEEEEcC-CCCeeeeeecCCccEEEE--Ee---cCCEEEEEecCcEEEEEeCC-Cccccccc
Q 003171 424 ALTTSIDGMIW-TGGANGLLLQWDP-NGNRLQDFQYLPFAVQCL--CT---FGSQIWVGYMNGIVQVLDLE-GNLLGGWV 495 (842)
Q Consensus 424 al~~s~dg~l~-Sgs~DgtIrlWD~-~g~~l~~l~~H~~~V~sl--s~---dG~~LasGs~DgtIrlWD~~-g~~i~~l~ 495 (842)
++.+|.||+++ +-=.+..|.+||+ +.+.++.+.||...-.-| ++ +.++|+|||+|+.|+||+.. |+++.++.
T Consensus 400 s~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~Ls 479 (519)
T KOG0293|consen 400 SFSISKDGKLALVNLQDQEIHLWDLEENKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVLS 479 (519)
T ss_pred EEEEcCCCcEEEEEcccCeeEEeecchhhHHHHhhcccccceEEEeccCCCCcceEEecCCCceEEEEEccCCceeEeec
Confidence 99999999964 4447889999999 677888999998653333 23 44699999999999999986 99999999
Q ss_pred ccccCEEEEEe---CCCEEEEEcCCCCeeecccc
Q 003171 496 AHSSPVIKMAV---GAGYIFTLANHGGIRGWNVT 526 (842)
Q Consensus 496 gH~~~V~sla~---dg~~l~S~S~DgtIrvWd~~ 526 (842)
||+..|++|++ ++.++||||.|||||||-..
T Consensus 480 GHs~~vNcVswNP~~p~m~ASasDDgtIRIWg~~ 513 (519)
T KOG0293|consen 480 GHSKTVNCVSWNPADPEMFASASDDGTIRIWGPS 513 (519)
T ss_pred CCcceeeEEecCCCCHHHhhccCCCCeEEEecCC
Confidence 99999999995 66789999999999999854
|
|
| >KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.92 E-value=3.1e-24 Score=237.48 Aligned_cols=246 Identities=21% Similarity=0.348 Sum_probs=188.8
Q ss_pred EEEEcC-CCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCCC-EEEeeCCCcEEEEeCCCcc
Q 003171 196 CMVGDE-ASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIE 273 (842)
Q Consensus 196 ~la~dp-dg~~LaSGs~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~~t~~ 273 (842)
++..|+ .+++|+||+.||.||+|+...... ...-..+.+++.|+.+|+.++...+|+ |+|+|.|-|||+|+.....
T Consensus 29 ~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~--~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~ 106 (735)
T KOG0308|consen 29 ALQLDAPNGRYLFTGGRDGIIRLWSVTQDSN--EPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDN 106 (735)
T ss_pred hccccCCCCceEEecCCCceEEEeccccccC--CcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCc
Confidence 445554 456799999999999999876420 001124677899999999999999996 9999999999999986532
Q ss_pred ceeecCCCceeeeEEEEeeceeecccceeccceeeeecCCEEEEEE-cCCCCEEEEeC-CCcEEEEEccCCcE--EEEee
Q 003171 274 KALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLS-DHSRAKVWSAG-FLSFALWDARTREL--LKVFN 349 (842)
Q Consensus 274 ~~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las-~~~~~~v~s~s-~~tI~lWD~~tg~~--l~~l~ 349 (842)
.++. . .++.| ...|+|++. ......|+||+ |+.|.|||+.+|.. +..+.
T Consensus 107 -~~c~-------s---------tir~H----------~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n 159 (735)
T KOG0308|consen 107 -TFCM-------S---------TIRTH----------KDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFN 159 (735)
T ss_pred -chhH-------h---------hhhcc----------cchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhcc
Confidence 1111 1 12223 567888888 66777888988 78999999998732 11111
Q ss_pred cCCceEeeeecccCCCcccccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEeecCccc-cCCCceEEEEEC
Q 003171 350 IDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFG-DDNRRTEALTTS 428 (842)
Q Consensus 350 ~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~-~~~~~v~al~~s 428 (842)
.+ ... .+. ++...|++++..
T Consensus 160 ---~~-----------------------t~~---------------------------------sl~sG~k~siYSLA~N 180 (735)
T KOG0308|consen 160 ---NV-----------------------TVN---------------------------------SLGSGPKDSIYSLAMN 180 (735)
T ss_pred ---cc-----------------------ccc---------------------------------cCCCCCccceeeeecC
Confidence 00 000 011 334556788888
Q ss_pred CCCc-EEEEeCCCeEEEEcC-CCCeeeeeecCCccEEEEE--ecCCEEEEEecCcEEEEEeCC-CcccccccccccCEEE
Q 003171 429 IDGM-IWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQCLC--TFGSQIWVGYMNGIVQVLDLE-GNLLGGWVAHSSPVIK 503 (842)
Q Consensus 429 ~dg~-l~Sgs~DgtIrlWD~-~g~~l~~l~~H~~~V~sls--~dG~~LasGs~DgtIrlWD~~-g~~i~~l~gH~~~V~s 503 (842)
+.|. +++|+..+.|++||. +++.+..++||+.-|.++- .||+++++||+||+|+|||+. .+|+.++..|.+.||+
T Consensus 181 ~t~t~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e~VWa 260 (735)
T KOG0308|consen 181 QTGTIIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYIVHKEGVWA 260 (735)
T ss_pred CcceEEEecCcccceEEeccccccceeeeeccccceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeEEeccCceEE
Confidence 8887 688999999999999 7889999999999999984 589999999999999999998 6799999999999999
Q ss_pred EEe--CCCEEEEEcCCCCeeeccccCCC
Q 003171 504 MAV--GAGYIFTLANHGGIRGWNVTSPG 529 (842)
Q Consensus 504 la~--dg~~l~S~S~DgtIrvWd~~~~~ 529 (842)
+.. +=+.+++|+.|+.|..=|+++|.
T Consensus 261 L~~~~sf~~vYsG~rd~~i~~Tdl~n~~ 288 (735)
T KOG0308|consen 261 LQSSPSFTHVYSGGRDGNIYRTDLRNPA 288 (735)
T ss_pred EeeCCCcceEEecCCCCcEEecccCCch
Confidence 985 45679999999999999988863
|
|
| >KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown] | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.8e-22 Score=210.96 Aligned_cols=299 Identities=15% Similarity=0.135 Sum_probs=188.5
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCCC-EEEeeCCCcEEEEeC
Q 003171 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPW 269 (842)
Q Consensus 191 ~~~V~~la~dpdg~~LaSGs~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~ 269 (842)
+.+|+|++.+|+.++++||+.|...-+|+..+| .....+.||+..|+++.||.||. |+||..+|.|+||..
T Consensus 64 ~~svFavsl~P~~~l~aTGGgDD~AflW~~~~g--------e~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~ 135 (399)
T KOG0296|consen 64 TDSVFAVSLHPNNNLVATGGGDDLAFLWDISTG--------EFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKV 135 (399)
T ss_pred CCceEEEEeCCCCceEEecCCCceEEEEEccCC--------cceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEc
Confidence 889999999999999999999999999999998 56788999999999999999998 689999999999999
Q ss_pred CCccceeecCCCceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcCCCCEEEEeC-CCcEEEEEccCCcEEEEe
Q 003171 270 EAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVF 348 (842)
Q Consensus 270 ~t~~~~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s-~~tI~lWD~~tg~~l~~l 348 (842)
.++.....+..+. .++..+.-.+.+..++.|+ |+.+=.|.+.++...+++
T Consensus 136 stg~~~~~~~~e~-----------------------------~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~~kv~ 186 (399)
T KOG0296|consen 136 STGGEQWKLDQEV-----------------------------EDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQALCKVM 186 (399)
T ss_pred ccCceEEEeeccc-----------------------------CceEEEEecccccEEEeecCCCcEEEEECCCcceeeEe
Confidence 8865544442111 1122222222222222222 223334444443334444
Q ss_pred ecCCceEeeeecccCCCccc----ccceEEEEEecCCCCc--------cceeeeEeecCcceEEecCCcEEEEee--cCc
Q 003171 349 NIDGQIENRVDMSLLPDFAM----EDEFKTKIVTSSKKDK--------AQSSFGFFQRSRNAIMGAADAVRRVAA--KGG 414 (842)
Q Consensus 349 ~~~~~~~~~~~~s~~~~~~~----~~~~~~~~~s~~~~~~--------~~~s~~~~~~~~~~~~g~~~~v~~v~~--~g~ 414 (842)
.+|.+..+.-.+.+.....+ +..+++|..+...+.. ....+.+...+..++.|..++...+-. .|.
T Consensus 187 ~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgK 266 (399)
T KOG0296|consen 187 SGHNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGK 266 (399)
T ss_pred cCCCCCcccccccCCCceEEEEecCceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccce
Confidence 44443333223322222111 1111111111000000 000111111122223333333222211 110
Q ss_pred ------------cccCCCceEEEE---ECCCCc-EEEEeCCCeEEEEcCCCCeeeeeecCCccEEEEEecC-CEEEEEec
Q 003171 415 ------------FGDDNRRTEALT---TSIDGM-IWTGGANGLLLQWDPNGNRLQDFQYLPFAVQCLCTFG-SQIWVGYM 477 (842)
Q Consensus 415 ------------~~~~~~~v~al~---~s~dg~-l~Sgs~DgtIrlWD~~g~~l~~l~~H~~~V~sls~dG-~~LasGs~ 477 (842)
..++...++++. ++..=. .+.|+-||+|-|||.....++..-.|...|..+.+.+ .+|++++.
T Consensus 267 Vv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c~he~~V~~l~w~~t~~l~t~c~ 346 (399)
T KOG0296|consen 267 VVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLRHICEHEDGVTKLKWLNTDYLLTACA 346 (399)
T ss_pred EEEecCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEecccchhheeccCCCceEEEEEcCcchheeecc
Confidence 011222333333 333323 4789999999999997666666667999999998877 69999999
Q ss_pred CcEEEEEeCC-CcccccccccccCEEEEE--eCCCEEEEEcCCCCeeecccc
Q 003171 478 NGIVQVLDLE-GNLLGGWVAHSSPVIKMA--VGAGYIFTLANHGGIRGWNVT 526 (842)
Q Consensus 478 DgtIrlWD~~-g~~i~~l~gH~~~V~sla--~dg~~l~S~S~DgtIrvWd~~ 526 (842)
+|.|++||.+ |++..+++||+..|.+++ ++.+.++|+|.|++.+|+++.
T Consensus 347 ~g~v~~wDaRtG~l~~~y~GH~~~Il~f~ls~~~~~vvT~s~D~~a~VF~v~ 398 (399)
T KOG0296|consen 347 NGKVRQWDARTGQLKFTYTGHQMGILDFALSPQKRLVVTVSDDNTALVFEVP 398 (399)
T ss_pred CceEEeeeccccceEEEEecCchheeEEEEcCCCcEEEEecCCCeEEEEecC
Confidence 9999999986 999999999999999977 688999999999999999753
|
|
| >PLN00181 protein SPA1-RELATED; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=4.7e-22 Score=244.88 Aligned_cols=242 Identities=16% Similarity=0.176 Sum_probs=181.3
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecC-CC-EEEeeCCCcEEEEe
Q 003171 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSY-GD-LWSGSEGGGIKIWP 268 (842)
Q Consensus 191 ~~~V~~la~dpdg~~LaSGs~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~d-G~-L~SgS~DgtIrvWd 268 (842)
.+.|.+++|+|+|++|+||+.|++|++|+......+..........+.+ ...|.+++|++. +. |+||+.||+|+|||
T Consensus 483 ~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~~-~~~v~~l~~~~~~~~~las~~~Dg~v~lWd 561 (793)
T PLN00181 483 SNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELAS-RSKLSGICWNSYIKSQVASSNFEGVVQVWD 561 (793)
T ss_pred CCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEecc-cCceeeEEeccCCCCEEEEEeCCCeEEEEE
Confidence 7789999999999999999999999999976421000000011233333 468999999885 44 89999999999999
Q ss_pred CCCccceeecCCCceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcC-CCCEEEEeC-CCcEEEEEccCCcEEE
Q 003171 269 WEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDH-SRAKVWSAG-FLSFALWDARTRELLK 346 (842)
Q Consensus 269 ~~t~~~~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~-~~~~v~s~s-~~tI~lWD~~tg~~l~ 346 (842)
+.+++....+ .+| ...|.++++.+ ++..+++++ |++|++||+.++.++.
T Consensus 562 ~~~~~~~~~~-------------------~~H----------~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~ 612 (793)
T PLN00181 562 VARSQLVTEM-------------------KEH----------EKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIG 612 (793)
T ss_pred CCCCeEEEEe-------------------cCC----------CCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEE
Confidence 9764322211 112 44577888875 566788777 6799999999887765
Q ss_pred EeecCCceEeeeecccCCCcccccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEeecCccccCCCceEEEE
Q 003171 347 VFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALT 426 (842)
Q Consensus 347 ~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~al~ 426 (842)
++..+. .+.++.
T Consensus 613 ~~~~~~--------------------------------------------------------------------~v~~v~ 624 (793)
T PLN00181 613 TIKTKA--------------------------------------------------------------------NICCVQ 624 (793)
T ss_pred EEecCC--------------------------------------------------------------------CeEEEE
Confidence 543211 122344
Q ss_pred E-CCCCc-EEEEeCCCeEEEEcC-CCC-eeeeeecCCccEEEEEe-cCCEEEEEecCcEEEEEeCC-------Ccccccc
Q 003171 427 T-SIDGM-IWTGGANGLLLQWDP-NGN-RLQDFQYLPFAVQCLCT-FGSQIWVGYMNGIVQVLDLE-------GNLLGGW 494 (842)
Q Consensus 427 ~-s~dg~-l~Sgs~DgtIrlWD~-~g~-~l~~l~~H~~~V~sls~-dG~~LasGs~DgtIrlWD~~-------g~~i~~l 494 (842)
+ +++|. +++|+.||+|++||+ +++ .+.++.+|...|.++.+ ++.+|++|+.|++|+|||+. ++++.++
T Consensus 625 ~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~ 704 (793)
T PLN00181 625 FPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFVDSSTLVSSSTDNTLKLWDLSMSISGINETPLHSF 704 (793)
T ss_pred EeCCCCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEeCCCEEEEEECCCEEEEEeCCCCccccCCcceEEE
Confidence 4 34555 899999999999999 554 57788899999999976 78899999999999999985 2568899
Q ss_pred cccccCEEEEE--eCCCEEEEEcCCCCeeeccccCCCC
Q 003171 495 VAHSSPVIKMA--VGAGYIFTLANHGGIRGWNVTSPGP 530 (842)
Q Consensus 495 ~gH~~~V~sla--~dg~~l~S~S~DgtIrvWd~~~~~~ 530 (842)
.+|...|.+++ +++.++++|+.|++|++|+...+.+
T Consensus 705 ~gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~ 742 (793)
T PLN00181 705 MGHTNVKNFVGLSVSDGYIATGSETNEVFVYHKAFPMP 742 (793)
T ss_pred cCCCCCeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCc
Confidence 99999998876 4788999999999999999765544
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.91 E-value=5.7e-23 Score=226.08 Aligned_cols=239 Identities=13% Similarity=0.184 Sum_probs=199.0
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCCC-EEEeeCCCcEEEEeC
Q 003171 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPW 269 (842)
Q Consensus 191 ~~~V~~la~dpdg~~LaSGs~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~ 269 (842)
+..|.|+.+.|.--++..+-+.|.+.||+.++. ....++.--.-||++..|-+--+ +++||+|..|||++.
T Consensus 13 SdRVKsVd~HPtePw~la~LynG~V~IWnyetq--------tmVksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfny 84 (794)
T KOG0276|consen 13 SDRVKSVDFHPTEPWILAALYNGDVQIWNYETQ--------TMVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNY 84 (794)
T ss_pred CCceeeeecCCCCceEEEeeecCeeEEEecccc--------eeeeeeeecccchhhheeeeccceEEEecCCceEEEEec
Confidence 567999999999999999999999999999986 56677776678999999988665 789999999999999
Q ss_pred CCccceeecCCCceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcCCCCEEEEeCC-CcEEEEEccCCc-EEEE
Q 003171 270 EAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGF-LSFALWDARTRE-LLKV 347 (842)
Q Consensus 270 ~t~~~~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s~-~tI~lWD~~tg~-~l~~ 347 (842)
.+.++...+.. | +..++++++.|....|.+++| .+||+||-+.+- |.++
T Consensus 85 nt~ekV~~FeA-------------------H----------~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qt 135 (794)
T KOG0276|consen 85 NTGEKVKTFEA-------------------H----------SDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQT 135 (794)
T ss_pred ccceeeEEeec-------------------c----------ccceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeE
Confidence 98776554432 2 556889999998888888885 699999976431 2222
Q ss_pred eecCCceEeeeecccCCCcccccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEeecCccccCCCceEEEEE
Q 003171 348 FNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTT 427 (842)
Q Consensus 348 l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~al~~ 427 (842)
|.+|.+-|..++|
T Consensus 136 -------------------------------------------------------------------feGH~HyVMqv~f 148 (794)
T KOG0276|consen 136 -------------------------------------------------------------------FEGHEHYVMQVAF 148 (794)
T ss_pred -------------------------------------------------------------------EcCcceEEEEEEe
Confidence 5566666777788
Q ss_pred CCCC--cEEEEeCCCeEEEEcC-CCCeeeeeecCCccEEEEEe----cCCEEEEEecCcEEEEEeCCC-ccccccccccc
Q 003171 428 SIDG--MIWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQCLCT----FGSQIWVGYMNGIVQVLDLEG-NLLGGWVAHSS 499 (842)
Q Consensus 428 s~dg--~l~Sgs~DgtIrlWD~-~g~~l~~l~~H~~~V~sls~----dG~~LasGs~DgtIrlWD~~g-~~i~~l~gH~~ 499 (842)
.|.. +++|+|-|+|||+|.+ ...+..+|++|...|+|+.. |..+|++|+.|.+|+|||-.+ .|++++.||+.
T Consensus 149 nPkD~ntFaS~sLDrTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGHt~ 228 (794)
T KOG0276|consen 149 NPKDPNTFASASLDRTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEGHTN 228 (794)
T ss_pred cCCCccceeeeeccccEEEEEcCCCCCceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecchHHHHHHhhcccc
Confidence 7753 4899999999999999 77889999999999999965 234999999999999999874 68999999999
Q ss_pred CEEEEEeCCC--EEEEEcCCCCeeeccccCCCCCcc
Q 003171 500 PVIKMAVGAG--YIFTLANHGGIRGWNVTSPGPLDS 533 (842)
Q Consensus 500 ~V~sla~dg~--~l~S~S~DgtIrvWd~~~~~~~d~ 533 (842)
.|..+.+.+. .++|||.|||+|+|+-.+|...+.
T Consensus 229 Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty~lE~t 264 (794)
T KOG0276|consen 229 NVSFVFFHPELPIIISGSEDGTVRIWNSKTYKLEKT 264 (794)
T ss_pred cceEEEecCCCcEEEEecCCccEEEecCcceehhhh
Confidence 9999998776 588999999999999887765443
|
|
| >KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.91 E-value=5.7e-24 Score=224.63 Aligned_cols=236 Identities=21% Similarity=0.310 Sum_probs=189.0
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCCC-EEEeeCCCcEEEEeCC
Q 003171 192 SSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWE 270 (842)
Q Consensus 192 ~~V~~la~dpdg~~LaSGs~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~~ 270 (842)
-+|..|.+.|+|+.|.+|++-|.+-+|+..+- .-...+++|..+|++|.++++|. ++||+.||.||+|+..
T Consensus 97 c~V~~v~WtPeGRRLltgs~SGEFtLWNg~~f--------nFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpn 168 (464)
T KOG0284|consen 97 CPVNVVRWTPEGRRLLTGSQSGEFTLWNGTSF--------NFETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPN 168 (464)
T ss_pred cceeeEEEcCCCceeEeecccccEEEecCcee--------eHHHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccc
Confidence 47888999999999999999999999987541 22334689999999999999998 8899999999999974
Q ss_pred CccceeecCCCceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcCCCCEEEEeCC-CcEEEEEccCCcEEEEee
Q 003171 271 AIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGF-LSFALWDARTRELLKVFN 349 (842)
Q Consensus 271 t~~~~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s~-~tI~lWD~~tg~~l~~l~ 349 (842)
-. ...... +| ....|+++++++.+.++.++++ ++|+|||..-.+...+|.
T Consensus 169 mn-nVk~~~-------------------ah---------h~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL~ 219 (464)
T KOG0284|consen 169 MN-NVKIIQ-------------------AH---------HAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVLR 219 (464)
T ss_pred hh-hhHHhh-------------------Hh---------hhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhheec
Confidence 21 000000 01 1356899999999999998885 789999987665544444
Q ss_pred cCCceEeeeecccCCCcccccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEeecCccccCCCceEEEEECC
Q 003171 350 IDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSI 429 (842)
Q Consensus 350 ~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~al~~s~ 429 (842)
+|+ ..|.++.+.|
T Consensus 220 GHg-------------------------------------------------------------------wdVksvdWHP 232 (464)
T KOG0284|consen 220 GHG-------------------------------------------------------------------WDVKSVDWHP 232 (464)
T ss_pred cCC-------------------------------------------------------------------CCcceeccCC
Confidence 443 2233344444
Q ss_pred C-CcEEEEeCCCeEEEEcC-CCCeeeeeecCCccEEEEEe--cCCEEEEEecCcEEEEEeCC-CcccccccccccCEEEE
Q 003171 430 D-GMIWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQCLCT--FGSQIWVGYMNGIVQVLDLE-GNLLGGWVAHSSPVIKM 504 (842)
Q Consensus 430 d-g~l~Sgs~DgtIrlWD~-~g~~l~~l~~H~~~V~sls~--dG~~LasGs~DgtIrlWD~~-g~~i~~l~gH~~~V~sl 504 (842)
. |.|+|||.|..||+||. +|+|+.++.+|.+.|+.+.+ +|.+|+++|.|..++++|+. -+.+.+++||...|+++
T Consensus 233 ~kgLiasgskDnlVKlWDprSg~cl~tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~r~Hkkdv~~~ 312 (464)
T KOG0284|consen 233 TKGLIASGSKDNLVKLWDPRSGSCLATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFTYRGHKKDVTSL 312 (464)
T ss_pred ccceeEEccCCceeEeecCCCcchhhhhhhccceEEEEEEcCCCCeeEEccCCceEEEEehhHhHHHHHhhcchhhheee
Confidence 3 45899999999999999 89999999999999999865 67899999999999999998 56799999999999999
Q ss_pred Ee---CCCEEEEEcCCCCeeeccccCCCCC
Q 003171 505 AV---GAGYIFTLANHGGIRGWNVTSPGPL 531 (842)
Q Consensus 505 a~---dg~~l~S~S~DgtIrvWd~~~~~~~ 531 (842)
.+ ..+.+.||+.||.|..|.+..-.|+
T Consensus 313 ~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~ 342 (464)
T KOG0284|consen 313 TWHPLNESLFTSGGSDGSVVHWVVGLEEPL 342 (464)
T ss_pred ccccccccceeeccCCCceEEEeccccccc
Confidence 85 5678889999999999998644443
|
|
| >KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.2e-22 Score=226.63 Aligned_cols=264 Identities=19% Similarity=0.255 Sum_probs=195.0
Q ss_pred EEEEecCCE-EEE-ecCCCEEEEeCCCCccccccccccccCCCCCCCCCCeeeeeecCCCeEE-EEEc-CCCCEEEEEeC
Q 003171 136 RTIVCTEEQ-LWA-GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMC-MVGD-EASGVVWSGHR 211 (842)
Q Consensus 136 ~~l~~~~~~-l~~-~~D~~vrvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~V~~-la~d-pdg~~LaSGs~ 211 (842)
|+++..... +.. |.|+++|||+-....-. +..+|.. + .+.|.+ +++. .++..|++|+.
T Consensus 18 r~v~~~~~~~i~s~sRd~t~~vw~~~~~~~l---------------~~~~~~~--~-~g~i~~~i~y~e~~~~~l~~g~~ 79 (745)
T KOG0301|consen 18 RAVAVTDGVCIISGSRDGTVKVWAKKGKQYL---------------ETHAFEG--P-KGFIANSICYAESDKGRLVVGGM 79 (745)
T ss_pred heeEecCCeEEeecCCCCceeeeeccCcccc---------------cceeccc--C-cceeeccceeccccCcceEeecc
Confidence 455544443 333 45999999997432111 1112211 1 333433 4444 36678999999
Q ss_pred CCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCCCEEEeeCCCcEEEEeCCCccceeecCCCceeeeEEEEe
Q 003171 212 DGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGDLWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVE 291 (842)
Q Consensus 212 DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~L~SgS~DgtIrvWd~~t~~~~l~~~~~~~~~~~l~~~ 291 (842)
|++|.+|...+. .....|+||+..|.|+....++.|+|||+|.|+|||..... ..++.
T Consensus 80 D~~i~v~~~~~~--------~P~~~LkgH~snVC~ls~~~~~~~iSgSWD~TakvW~~~~l--~~~l~------------ 137 (745)
T KOG0301|consen 80 DTTIIVFKLSQA--------EPLYTLKGHKSNVCSLSIGEDGTLISGSWDSTAKVWRIGEL--VYSLQ------------ 137 (745)
T ss_pred cceEEEEecCCC--------CchhhhhccccceeeeecCCcCceEecccccceEEecchhh--hcccC------------
Confidence 999999999886 67889999999999999988899999999999999987432 11111
Q ss_pred eceeecccceeccceeeeecCCEEEEEEcCCCCEEEEeC-CCcEEEEEccCCcEEEEeecCCceEeeeecccCCCccccc
Q 003171 292 RSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMED 370 (842)
Q Consensus 292 ~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s-~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~~~~~ 370 (842)
+| ...|-.+++-+.+ ++.+|+ |++||+|.. ++++++|.+
T Consensus 138 -------gH----------~asVWAv~~l~e~-~~vTgsaDKtIklWk~--~~~l~tf~g-------------------- 177 (745)
T KOG0301|consen 138 -------GH----------TASVWAVASLPEN-TYVTGSADKTIKLWKG--GTLLKTFSG-------------------- 177 (745)
T ss_pred -------Cc----------chheeeeeecCCC-cEEeccCcceeeeccC--Cchhhhhcc--------------------
Confidence 12 2233445555555 455554 789999976 555555443
Q ss_pred ceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEeecCccccCCCceEEEEECCCCcEEEEeCCCeEEEEcCCCC
Q 003171 371 EFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGMIWTGGANGLLLQWDPNGN 450 (842)
Q Consensus 371 ~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~al~~s~dg~l~Sgs~DgtIrlWD~~g~ 450 (842)
|...|+.|++-+++.++|++.||.||+|+++|+
T Consensus 178 -----------------------------------------------HtD~VRgL~vl~~~~flScsNDg~Ir~w~~~ge 210 (745)
T KOG0301|consen 178 -----------------------------------------------HTDCVRGLAVLDDSHFLSCSNDGSIRLWDLDGE 210 (745)
T ss_pred -----------------------------------------------chhheeeeEEecCCCeEeecCCceEEEEeccCc
Confidence 444566677778888999999999999999999
Q ss_pred eeeeeecCCccEEEEEe--cCCEEEEEecCcEEEEEeCCCcccccccccccCEEEEE-eCCCEEEEEcCCCCeeeccccC
Q 003171 451 RLQDFQYLPFAVQCLCT--FGSQIWVGYMNGIVQVLDLEGNLLGGWVAHSSPVIKMA-VGAGYIFTLANHGGIRGWNVTS 527 (842)
Q Consensus 451 ~l~~l~~H~~~V~sls~--dG~~LasGs~DgtIrlWD~~g~~i~~l~gH~~~V~sla-~dg~~l~S~S~DgtIrvWd~~~ 527 (842)
++.++.+|++-|+|++. ++..|+++++|+++|+|+.. .|.+.+...+-.||++. ....-++.|+.||.||||....
T Consensus 211 ~l~~~~ghtn~vYsis~~~~~~~Ivs~gEDrtlriW~~~-e~~q~I~lPttsiWsa~~L~NgDIvvg~SDG~VrVfT~~k 289 (745)
T KOG0301|consen 211 VLLEMHGHTNFVYSISMALSDGLIVSTGEDRTLRIWKKD-ECVQVITLPTTSIWSAKVLLNGDIVVGGSDGRVRVFTVDK 289 (745)
T ss_pred eeeeeeccceEEEEEEecCCCCeEEEecCCceEEEeecC-ceEEEEecCccceEEEEEeeCCCEEEeccCceEEEEEecc
Confidence 99999999999999973 67799999999999999976 77777777777899987 4666788999999999998653
|
|
| >KOG0282 consensus mRNA splicing factor [Function unknown] | Back alignment and domain information |
|---|
Probab=99.90 E-value=9.8e-24 Score=227.25 Aligned_cols=266 Identities=17% Similarity=0.199 Sum_probs=202.3
Q ss_pred CCCeEEEEEcC-CCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCCC-EEEeeCCCcEEEEe
Q 003171 191 VSSVMCMVGDE-ASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWP 268 (842)
Q Consensus 191 ~~~V~~la~dp-dg~~LaSGs~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd 268 (842)
+-.|.|+.|.| .+.+|+||+.|+.|+||++-... +++++++||+.+|.+++|+.+|. ++|+|.|++||+||
T Consensus 214 ~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~-------~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlwD 286 (503)
T KOG0282|consen 214 TKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDR-------RCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLKLWD 286 (503)
T ss_pred ccccchhhhccceeeEEEecCCCceEEEEEEecCc-------ceehhhhcchhhhhhhhccccCCeeeeeecceeeeeec
Confidence 77899999999 89999999999999999987632 78899999999999999999997 89999999999999
Q ss_pred CCCccceeecCCCceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcCCC-CEEEEeC-CCcEEEEEccCCcEEE
Q 003171 269 WEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSR-AKVWSAG-FLSFALWDARTRELLK 346 (842)
Q Consensus 269 ~~t~~~~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~-~~v~s~s-~~tI~lWD~~tg~~l~ 346 (842)
++|+....++... .-..|+-+.+++ ..+.+|+ ++.|+.||+++|++++
T Consensus 287 tETG~~~~~f~~~------------------------------~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvq 336 (503)
T KOG0282|consen 287 TETGQVLSRFHLD------------------------------KVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQ 336 (503)
T ss_pred cccceEEEEEecC------------------------------CCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHH
Confidence 9998765554321 112344555555 3444444 6789999999999765
Q ss_pred EeecCCceEeeeecccCCCcccccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEeecCc-----cc--cCC
Q 003171 347 VFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGG-----FG--DDN 419 (842)
Q Consensus 347 ~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~-----~~--~~~ 419 (842)
.+..|-+. +.++.|.+.++.-+..+.+..+++|.-+. +. ...
T Consensus 337 eYd~hLg~-------------------------------i~~i~F~~~g~rFissSDdks~riWe~~~~v~ik~i~~~~~ 385 (503)
T KOG0282|consen 337 EYDRHLGA-------------------------------ILDITFVDEGRRFISSSDDKSVRIWENRIPVPIKNIADPEM 385 (503)
T ss_pred HHHhhhhh-------------------------------eeeeEEccCCceEeeeccCccEEEEEcCCCccchhhcchhh
Confidence 54333221 12345555555556666666666665211 11 123
Q ss_pred CceEEEEECCCCc-EEEEeCCCeEEEEcCC----CCeeeeeecCCccEEE----EEecCCEEEEEecCcEEEEEeCC-Cc
Q 003171 420 RRTEALTTSIDGM-IWTGGANGLLLQWDPN----GNRLQDFQYLPFAVQC----LCTFGSQIWVGYMNGIVQVLDLE-GN 489 (842)
Q Consensus 420 ~~v~al~~s~dg~-l~Sgs~DgtIrlWD~~----g~~l~~l~~H~~~V~s----ls~dG~~LasGs~DgtIrlWD~~-g~ 489 (842)
....++...|++. ++.-+.|+-|.++.+. -+.-+.|+||..+=.+ +++||++|++|+.||.+.+||-+ .+
T Consensus 386 hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~k 465 (503)
T KOG0282|consen 386 HTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTTK 465 (503)
T ss_pred ccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceeccCceeeEEEcCCCCeEEeecCCccEEEeechhhh
Confidence 4567788888887 6777889989999873 2455678888755333 46799999999999999999987 68
Q ss_pred ccccccccccCEEEEEeC---CCEEEEEcCCCCeeecc
Q 003171 490 LLGGWVAHSSPVIKMAVG---AGYIFTLANHGGIRGWN 524 (842)
Q Consensus 490 ~i~~l~gH~~~V~sla~d---g~~l~S~S~DgtIrvWd 524 (842)
++..|++|+.++..+.+. .+.++|+|.||.|++|+
T Consensus 466 l~~~lkah~~~ci~v~wHP~e~Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 466 LVSKLKAHDQPCIGVDWHPVEPSKVATCGWDGLIKIWD 503 (503)
T ss_pred hhhccccCCcceEEEEecCCCcceeEecccCceeEecC
Confidence 999999999999999864 46799999999999996
|
|
| >KOG0565 consensus Inositol polyphosphate 5-phosphatase and related proteins [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.2e-23 Score=204.59 Aligned_cols=143 Identities=35% Similarity=0.520 Sum_probs=125.1
Q ss_pred ceEEEeeeeceeeEEEEEEeccccCccCceeeceeecccCcccCCCCeeEEEEEEeCeEEEEEeecCcCCcchHHH-HHH
Q 003171 632 TFERVGSRQLAGLLIAVWVRKNLKDYVGDVDVAAVPCGFGRAIGNKGAVGLRVRVYDRIMCFVNCHFAAHLEAVNR-RNA 710 (842)
Q Consensus 632 ~y~~v~s~~l~g~~l~vf~r~~~~~~i~~v~~~~v~~G~~~~~gnKG~v~i~~~i~~~~~~Fv~~HLaa~~~~~~~-Rn~ 710 (842)
.|+.+.+.+|+++.+.+|++.++..++.++++.++++|+++.+||||+|+++++++++.+|||+|||+||.++..+ ||+
T Consensus 2 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~v~~g~~~~~~nkg~v~is~~~~~~~~~~v~~hl~~~~~~~~~~r~~ 81 (145)
T KOG0565|consen 2 LYVVVASGRLVGIDLSVLLRRDLLDHSFNVRVSEVGTGIMGYLGNKGGVAISFVLSQTSFCFVISHLTSGVHKVYERRNE 81 (145)
T ss_pred cEEEEeeeEEEEEEEEEEehhhhhhhhcccEEEEecceEEEEeCCCCeEEEEEEEcCceEEEEEecccccchhhHHHhhc
Confidence 5899999999999999999999999999999999999999999999999999999999999999999999998888 999
Q ss_pred HHHHHHHhcCcCCCCCccchhccCCCceeeecccCCCCCCCccCCCCCcCcccEEEEeccceeeecCCChHHHHHHhhhc
Q 003171 711 DFDHVYRTMTFCRPSNLCSAAAAGASSVVQMLRSTNPLSGLTVEGVPELSEADMVIFLGDFNYRLDGITYDEARDFISQR 790 (842)
Q Consensus 711 ~~~~I~~~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vf~~GDlNyRi~~~~~~~~~~~i~~~ 790 (842)
||.+|++.+.|...... ..+......+|+|||+||||||+...++.++..++.++
T Consensus 82 d~~~i~~~~~~~~~~~~-------------------------~~~~~~~~~~D~v~w~GDlN~Rl~~~~~~~~~~~~~~~ 136 (145)
T KOG0565|consen 82 DYQEILNGLRFPSVSPA-------------------------SEPVISDGEHDTVIWLGDLNYRLSGPSYLEVRTLISVK 136 (145)
T ss_pred cHHHHHhhccccccCcc-------------------------cccccccccccEEEEecceeeeecCcccccchhhhhhc
Confidence 99999999998753321 00000011289999999999999984488889999999
Q ss_pred chHHHHHhh
Q 003171 791 CFDWLRERD 799 (842)
Q Consensus 791 ~~~~L~~~D 799 (842)
.++.|+++|
T Consensus 137 ~~~~l~~~d 145 (145)
T KOG0565|consen 137 SRDGLLEKD 145 (145)
T ss_pred chhhhhccC
Confidence 998888876
|
|
| >KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.4e-22 Score=207.91 Aligned_cols=270 Identities=18% Similarity=0.222 Sum_probs=202.4
Q ss_pred CCEEEEe-cCCCEEEEeCCCCccccccccccccCCCCCCCCCCeeeeeecCCCeEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 003171 142 EEQLWAG-GENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGHRDGRIMCWKM 220 (842)
Q Consensus 142 ~~~l~~~-~D~~vrvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~V~~la~dpdg~~LaSGs~DGtIrlWdl 220 (842)
+.-|..| -||-|-|||.-++... +.-.-.+.-.-..+ ..+|+|+.|+.|..+||||+.||.|++|.+
T Consensus 225 gqyLvsgSvDGFiEVWny~~GKlr-----------KDLkYQAqd~fMMm-d~aVlci~FSRDsEMlAsGsqDGkIKvWri 292 (508)
T KOG0275|consen 225 GQYLVSGSVDGFIEVWNYTTGKLR-----------KDLKYQAQDNFMMM-DDAVLCISFSRDSEMLASGSQDGKIKVWRI 292 (508)
T ss_pred CceEeeccccceeeeehhccchhh-----------hhhhhhhhcceeec-ccceEEEeecccHHHhhccCcCCcEEEEEE
Confidence 4444444 4999999998664321 11010111011234 789999999999999999999999999999
Q ss_pred CCCccCCCCCcceeEEec-ccCCcEEEEEEecCCC-EEEeeCCCcEEEEeCCCccceeecCCCceeeeEEEEeeceeecc
Q 003171 221 NARLLDSDDGFGEVLSWQ-AHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLR 298 (842)
Q Consensus 221 ~~g~~~~~~~~~~~~~l~-gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~~t~~~~l~~~~~~~~~~~l~~~~s~~~l~ 298 (842)
.+| .+++.|. +|+..|+|+.||.|+. ++|+|.|.|+|+--+.+++....+ |
T Consensus 293 ~tG--------~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEf-------------------r 345 (508)
T KOG0275|consen 293 ETG--------QCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEF-------------------R 345 (508)
T ss_pred ecc--------hHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccchhHHHh-------------------c
Confidence 999 6777775 9999999999999986 899999999999998776543322 3
Q ss_pred cceeccceeeeecCCEEEEEEcCCCCEEEEeC-CCcEEEEEccCCcEEEEeecCCceEeeeecccCCCcccccceEEEEE
Q 003171 299 SHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIV 377 (842)
Q Consensus 299 ~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s-~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~ 377 (842)
|| ++.+.-..+.++|..|.+++ |++|++|+.+|.+|+.+|.+.+..
T Consensus 346 GH----------sSyvn~a~ft~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d----------------------- 392 (508)
T KOG0275|consen 346 GH----------SSYVNEATFTDDGHHIISASSDGTVKVWHGKTTECLSTFKPLGTD----------------------- 392 (508)
T ss_pred Cc----------cccccceEEcCCCCeEEEecCCccEEEecCcchhhhhhccCCCCc-----------------------
Confidence 33 34455566677777777766 789999999999999888653310
Q ss_pred ecCCCCccceeeeEeecCcceEEecCCcEEEEeecCccccCCCceEEEEECCC-CcEEEEeCCCeEEEEcCCCCeeeeee
Q 003171 378 TSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSID-GMIWTGGANGLLLQWDPNGNRLQDFQ 456 (842)
Q Consensus 378 s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~al~~s~d-g~l~Sgs~DgtIrlWD~~g~~l~~l~ 456 (842)
..+.++-. +..+ ..++.+-..++|.+-++.|+.++.|.
T Consensus 393 ------~~vnsv~~-----------------------------------~PKnpeh~iVCNrsntv~imn~qGQvVrsfs 431 (508)
T KOG0275|consen 393 ------YPVNSVIL-----------------------------------LPKNPEHFIVCNRSNTVYIMNMQGQVVRSFS 431 (508)
T ss_pred ------ccceeEEE-----------------------------------cCCCCceEEEEcCCCeEEEEeccceEEeeec
Confidence 00000000 1111 13667777889999999999999886
Q ss_pred c----CCccEEE-EEecCCEEEEEecCcEEEEEeCC-CcccccccccccCEEEEE--eCCCEEEEEcCCCCeeecc
Q 003171 457 Y----LPFAVQC-LCTFGSQIWVGYMNGIVQVLDLE-GNLLGGWVAHSSPVIKMA--VGAGYIFTLANHGGIRGWN 524 (842)
Q Consensus 457 ~----H~~~V~s-ls~dG~~LasGs~DgtIrlWD~~-g~~i~~l~gH~~~V~sla--~dg~~l~S~S~DgtIrvWd 524 (842)
. ...-|.| +++-|.+++..+.|+.++.+.+. |++-+++.-|...|..++ +..+.++|=|.||.+++|.
T Consensus 432 SGkREgGdFi~~~lSpkGewiYcigED~vlYCF~~~sG~LE~tl~VhEkdvIGl~HHPHqNllAsYsEDgllKLWk 507 (508)
T KOG0275|consen 432 SGKREGGDFINAILSPKGEWIYCIGEDGVLYCFSVLSGKLERTLPVHEKDVIGLTHHPHQNLLASYSEDGLLKLWK 507 (508)
T ss_pred cCCccCCceEEEEecCCCcEEEEEccCcEEEEEEeecCceeeeeecccccccccccCcccchhhhhcccchhhhcC
Confidence 3 2234665 47899999999999999999975 999999999999999998 4667789999999999995
|
|
| >KOG0645 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.89 E-value=9.9e-21 Score=191.34 Aligned_cols=264 Identities=17% Similarity=0.188 Sum_probs=193.4
Q ss_pred CCCeEEEEEcCC-CCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEe-cccCCcEEEEEEecCCC-EEEeeCCCcEEEE
Q 003171 191 VSSVMCMVGDEA-SGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSW-QAHRGPVLSLCISSYGD-LWSGSEGGGIKIW 267 (842)
Q Consensus 191 ~~~V~~la~dpd-g~~LaSGs~DGtIrlWdl~~g~~~~~~~~~~~~~l-~gH~~~V~slafs~dG~-L~SgS~DgtIrvW 267 (842)
.+.|..++++|. |.+|||++.|..||+|+...+ +.+.+...+ .+|+..|+++|++|.|+ |++||.|.|+-||
T Consensus 14 ~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~-----~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t~~Iw 88 (312)
T KOG0645|consen 14 KDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSG-----DSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDATVVIW 88 (312)
T ss_pred CCcEEEEEeccCCceEEEeecCCceEEEEecCCC-----CcEEEEEeccccchheeeeeeecCCCcEEEEeeccceEEEe
Confidence 668999999998 789999999999999998853 223444444 58999999999999999 7899999999999
Q ss_pred eCCCccceeecCCCceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcCCCCEEEEeC-CCcEEEEEccCCc---
Q 003171 268 PWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRE--- 343 (842)
Q Consensus 268 d~~t~~~~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s-~~tI~lWD~~tg~--- 343 (842)
.-...+.. +.. .+.|| .++|++++.+.+|..|++++ |+.+=||.+..+.
T Consensus 89 ~k~~~efe--------cv~---------~lEGH----------EnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfe 141 (312)
T KOG0645|consen 89 KKEDGEFE--------CVA---------TLEGH----------ENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFE 141 (312)
T ss_pred ecCCCcee--------EEe---------eeecc----------ccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEE
Confidence 86543211 111 12344 67899999999999999887 6789999875332
Q ss_pred EEEEeecCCceEeeeecccCCCcccccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEeecCccccCCCceE
Q 003171 344 LLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTE 423 (842)
Q Consensus 344 ~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~ 423 (842)
++.+|+ +|.+-|.
T Consensus 142 c~aVL~-------------------------------------------------------------------~HtqDVK 154 (312)
T KOG0645|consen 142 CIAVLQ-------------------------------------------------------------------EHTQDVK 154 (312)
T ss_pred EEeeec-------------------------------------------------------------------ccccccc
Confidence 223333 3334444
Q ss_pred EEEECCC-CcEEEEeCCCeEEEEcCC-C---CeeeeeecCCccEEEEEec--CCEEEEEecCcEEEEEeCCCcccccccc
Q 003171 424 ALTTSID-GMIWTGGANGLLLQWDPN-G---NRLQDFQYLPFAVQCLCTF--GSQIWVGYMNGIVQVLDLEGNLLGGWVA 496 (842)
Q Consensus 424 al~~s~d-g~l~Sgs~DgtIrlWD~~-g---~~l~~l~~H~~~V~sls~d--G~~LasGs~DgtIrlWD~~g~~i~~l~g 496 (842)
.+.+.|- +.|+|+|-|+|||+|+-. + +|++++.+|.+.|.+++++ |.+|++++.|++|+||-.-. ..-.-
T Consensus 155 ~V~WHPt~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~---~~~~~ 231 (312)
T KOG0645|consen 155 HVIWHPTEDLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLYT---DLSGM 231 (312)
T ss_pred EEEEcCCcceeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEecCCcceEeeeecc---Ccchh
Confidence 4455553 458999999999999873 4 6999999999999999874 88999999999999998531 11124
Q ss_pred cccCEEEEEeCCCEEEEEcCCCCeeeccccCCCCCcchhhhhhcccccccccccceeEEEEEEEeC
Q 003171 497 HSSPVIKMAVGAGYIFTLANHGGIRGWNVTSPGPLDSILCKELAGKEFLYTRMENLKILAGTWNVG 562 (842)
Q Consensus 497 H~~~V~sla~dg~~l~S~S~DgtIrvWd~~~~~~~d~~l~~~l~~r~~~y~~~~~~~i~~~twNv~ 562 (842)
|+..++.++++...|+|++.|+.|+++.-.. .|-+... +.+.+++.. .+..|-..-||-+
T Consensus 232 ~sr~~Y~v~W~~~~IaS~ggD~~i~lf~~s~-~~d~p~~-~l~~~~~~a----He~dVNsV~w~p~ 291 (312)
T KOG0645|consen 232 HSRALYDVPWDNGVIASGGGDDAIRLFKESD-SPDEPSW-NLLAKKEGA----HEVDVNSVQWNPK 291 (312)
T ss_pred cccceEeeeecccceEeccCCCEEEEEEecC-CCCCchH-HHHHhhhcc----cccccceEEEcCC
Confidence 7889999999877899999999999997442 2222222 122222221 2224677788873
|
|
| >KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.6e-21 Score=191.79 Aligned_cols=266 Identities=17% Similarity=0.225 Sum_probs=202.6
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCCC-EEEeeCCCcEEEEeC
Q 003171 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPW 269 (842)
Q Consensus 191 ~~~V~~la~dpdg~~LaSGs~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~ 269 (842)
.++|.++.++-||++..+++.|.+||+|+.-.| .++.+..||...|..++.+.|.. ++||+.|+.|.+||+
T Consensus 17 qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg--------~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV 88 (307)
T KOG0316|consen 17 QGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRG--------ALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDV 88 (307)
T ss_pred ccceEEEEEccCCCEEEEcCCCceEEeeccccc--------ceeeeecCCCceeeeccccccccccccCCCCceEEEEEc
Confidence 779999999999999999999999999999887 68999999999999999998875 999999999999999
Q ss_pred CCccceeecCCCceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcCCCCEEEEeC-CCcEEEEEccCCc--EEE
Q 003171 270 EAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRE--LLK 346 (842)
Q Consensus 270 ~t~~~~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s-~~tI~lWD~~tg~--~l~ 346 (842)
++++..-+ +++| ..+|+.+.+......|+|++ |.++++||-++.. +++
T Consensus 89 ~TGkv~Rr-------------------~rgH----------~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQ 139 (307)
T KOG0316|consen 89 NTGKVDRR-------------------FRGH----------LAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQ 139 (307)
T ss_pred ccCeeeee-------------------cccc----------cceeeEEEecCcceEEEeccccceeEEEEcccCCCCccc
Confidence 88753322 2344 34577788877777888888 5799999998753 333
Q ss_pred EeecCCceEeeeecccCCCcccccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEee--cCccccC--CCce
Q 003171 347 VFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAA--KGGFGDD--NRRT 422 (842)
Q Consensus 347 ~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~--~g~~~~~--~~~v 422 (842)
+|..... . +.++... ...++.|+.+|..|.-. +|++..+ ...|
T Consensus 140 ildea~D-----------------~--------------V~Si~v~--~heIvaGS~DGtvRtydiR~G~l~sDy~g~pi 186 (307)
T KOG0316|consen 140 ILDEAKD-----------------G--------------VSSIDVA--EHEIVAGSVDGTVRTYDIRKGTLSSDYFGHPI 186 (307)
T ss_pred hhhhhcC-----------------c--------------eeEEEec--ccEEEeeccCCcEEEEEeecceeehhhcCCcc
Confidence 3311000 0 0001111 12346778888766654 5655443 4688
Q ss_pred EEEEECCCCc-EEEEeCCCeEEEEcC-CCCeeeeeecCCccEEE----EEecCCEEEEEecCcEEEEEeCC-Cccccccc
Q 003171 423 EALTTSIDGM-IWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQC----LCTFGSQIWVGYMNGIVQVLDLE-GNLLGGWV 495 (842)
Q Consensus 423 ~al~~s~dg~-l~Sgs~DgtIrlWD~-~g~~l~~l~~H~~~V~s----ls~dG~~LasGs~DgtIrlWD~~-g~~i~~l~ 495 (842)
+++.||+||+ ++.++.|++|||-|- +|+.++.++||.+.=.. +.....++++||+||.|.+||+. +.++..+.
T Consensus 187 t~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYkGhkn~eykldc~l~qsdthV~sgSEDG~Vy~wdLvd~~~~sk~~ 266 (307)
T KOG0316|consen 187 TSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYKGHKNMEYKLDCCLNQSDTHVFSGSEDGKVYFWDLVDETQISKLS 266 (307)
T ss_pred eeEEecCCCCEEEEeeccceeeecccchhHHHHHhcccccceeeeeeeecccceeEEeccCCceEEEEEeccceeeeeec
Confidence 9999999999 678899999999999 79999999999986543 34456799999999999999986 78888898
Q ss_pred ccccC-EEEEEeCCCE--EEEEcCCCCeeeccccC
Q 003171 496 AHSSP-VIKMAVGAGY--IFTLANHGGIRGWNVTS 527 (842)
Q Consensus 496 gH~~~-V~sla~dg~~--l~S~S~DgtIrvWd~~~ 527 (842)
.|... |.+|+..++. ++++ .++.+..|--..
T Consensus 267 ~~~~v~v~dl~~hp~~~~f~~A-~~~~~~~~~~~~ 300 (307)
T KOG0316|consen 267 VVSTVIVTDLSCHPTMDDFITA-TGHGDLFWYQEN 300 (307)
T ss_pred cCCceeEEeeecccCccceeEe-cCCceeceeehh
Confidence 88887 7888876653 4444 455677776443
|
|
| >KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.89 E-value=6.5e-21 Score=204.76 Aligned_cols=277 Identities=12% Similarity=0.196 Sum_probs=208.0
Q ss_pred ceeEEEEec--CCEEEE-ecCCCEEEEeCCCCccccccccccccCCCCCCCCCCeeeeeecCCCeEEEEEcCCCCEEEEE
Q 003171 133 CFLRTIVCT--EEQLWA-GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSG 209 (842)
Q Consensus 133 ~~~~~l~~~--~~~l~~-~~D~~vrvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~V~~la~dpdg~~LaSG 209 (842)
+=+.+|+=. ++.|.. +.||.+|+|+...... ..+ .-| .+||++|.++.+|.+|+||
T Consensus 236 kdVT~L~Wn~~G~~LatG~~~G~~riw~~~G~l~------------------~tl--~~H-kgPI~slKWnk~G~yilS~ 294 (524)
T KOG0273|consen 236 KDVTSLDWNNDGTLLATGSEDGEARIWNKDGNLI------------------STL--GQH-KGPIFSLKWNKKGTYILSG 294 (524)
T ss_pred CCcceEEecCCCCeEEEeecCcEEEEEecCchhh------------------hhh--hcc-CCceEEEEEcCCCCEEEec
Confidence 334555533 445554 4689999999753211 111 123 8899999999999999999
Q ss_pred eCCCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCCCEEEeeCCCcEEEEeCCCccceeecCCCceeeeEEE
Q 003171 210 HRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGDLWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALI 289 (842)
Q Consensus 210 s~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~L~SgS~DgtIrvWd~~t~~~~l~~~~~~~~~~~l~ 289 (842)
+.||++.+||..+| .....+.-|..+-..|.|-.+..+++.+.|+.|+|..+....+..++.
T Consensus 295 ~vD~ttilwd~~~g--------~~~q~f~~~s~~~lDVdW~~~~~F~ts~td~~i~V~kv~~~~P~~t~~---------- 356 (524)
T KOG0273|consen 295 GVDGTTILWDAHTG--------TVKQQFEFHSAPALDVDWQSNDEFATSSTDGCIHVCKVGEDRPVKTFI---------- 356 (524)
T ss_pred cCCccEEEEeccCc--------eEEEeeeeccCCccceEEecCceEeecCCCceEEEEEecCCCcceeee----------
Confidence 99999999999887 556677788888677888888889999999999999985543332222
Q ss_pred EeeceeecccceeccceeeeecCCEEEEEEcCCCCEEEEeCC-CcEEEEEccCCcEEEEeecCCceEeeeecccCCCccc
Q 003171 290 VERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGF-LSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAM 368 (842)
Q Consensus 290 ~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s~-~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~~~ 368 (842)
+| ++.|.++-..+.+..+++++| +|++||....+.+...|..|.+.+..+.
T Consensus 357 ---------GH----------~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~~~~~l~~Hskei~t~~--------- 408 (524)
T KOG0273|consen 357 ---------GH----------HGEVNALKWNPTGSLLASCSDDGTLKIWSMGQSNSVHDLQAHSKEIYTIK--------- 408 (524)
T ss_pred ---------cc----------cCceEEEEECCCCceEEEecCCCeeEeeecCCCcchhhhhhhccceeeEe---------
Confidence 22 567888888888899999885 7999999887777666666654321111
Q ss_pred ccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEeecCccccCCCceEEEEECCCC-cEEEEeCCCeEEEEcC
Q 003171 369 EDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDG-MIWTGGANGLLLQWDP 447 (842)
Q Consensus 369 ~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~al~~s~dg-~l~Sgs~DgtIrlWD~ 447 (842)
|++.. ....+ +.++ .+++++.|++|++||+
T Consensus 409 --------wsp~g--------------------------------~v~~n---------~~~~~~l~sas~dstV~lwdv 439 (524)
T KOG0273|consen 409 --------WSPTG--------------------------------PVTSN---------PNMNLMLASASFDSTVKLWDV 439 (524)
T ss_pred --------ecCCC--------------------------------CccCC---------CcCCceEEEeecCCeEEEEEc
Confidence 11110 00000 0122 3788999999999999
Q ss_pred -CCCeeeeeecCCccEEEEEe--cCCEEEEEecCcEEEEEeCC-CcccccccccccCEEEEEe--CCCEEEEEcCCCCee
Q 003171 448 -NGNRLQDFQYLPFAVQCLCT--FGSQIWVGYMNGIVQVLDLE-GNLLGGWVAHSSPVIKMAV--GAGYIFTLANHGGIR 521 (842)
Q Consensus 448 -~g~~l~~l~~H~~~V~sls~--dG~~LasGs~DgtIrlWD~~-g~~i~~l~gH~~~V~sla~--dg~~l~S~S~DgtIr 521 (842)
.|.++.+|..|..+|+++++ +|+|+|+|+.||.|.+|+.. +++.+..++- +.|..|.+ +|.++..+..|+.++
T Consensus 440 ~~gv~i~~f~kH~~pVysvafS~~g~ylAsGs~dg~V~iws~~~~~l~~s~~~~-~~Ifel~Wn~~G~kl~~~~sd~~vc 518 (524)
T KOG0273|consen 440 ESGVPIHTLMKHQEPVYSVAFSPNGRYLASGSLDGCVHIWSTKTGKLVKSYQGT-GGIFELCWNAAGDKLGACASDGSVC 518 (524)
T ss_pred cCCceeEeeccCCCceEEEEecCCCcEEEecCCCCeeEeccccchheeEeecCC-CeEEEEEEcCCCCEEEEEecCCCce
Confidence 79999999999999999975 69999999999999999987 7888888764 55888875 788888888999999
Q ss_pred ecccc
Q 003171 522 GWNVT 526 (842)
Q Consensus 522 vWd~~ 526 (842)
+-|++
T Consensus 519 vldlr 523 (524)
T KOG0273|consen 519 VLDLR 523 (524)
T ss_pred EEEec
Confidence 98764
|
|
| >KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.88 E-value=5.5e-22 Score=203.48 Aligned_cols=243 Identities=19% Similarity=0.288 Sum_probs=189.9
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCCC-EEEeeCCCcEEEEeC
Q 003171 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPW 269 (842)
Q Consensus 191 ~~~V~~la~dpdg~~LaSGs~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~ 269 (842)
.+-+-|..|+|||++|+|||.||.|.+|+..+|...-+-..+..-.|.-|..+|.|+.||.|.. |+||+.||.||||.+
T Consensus 213 KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvWri 292 (508)
T KOG0275|consen 213 KSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVWRI 292 (508)
T ss_pred ccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEEEEE
Confidence 5678999999999999999999999999998873100000111112334788999999999998 789999999999999
Q ss_pred CCccceeecCCCceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcCCCCEEEEeC-CCcEEEEEccCCcEEEEe
Q 003171 270 EAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVF 348 (842)
Q Consensus 270 ~t~~~~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s-~~tI~lWD~~tg~~l~~l 348 (842)
.++.+.-++.. +| +..+.++.++.++..+.|++ |.+++|--+++|++++.|
T Consensus 293 ~tG~ClRrFdr------------------AH----------tkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEf 344 (508)
T KOG0275|consen 293 ETGQCLRRFDR------------------AH----------TKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEF 344 (508)
T ss_pred ecchHHHHhhh------------------hh----------ccCeeEEEEccCcchhhcccccceEEEeccccchhHHHh
Confidence 88765443321 12 45678888988888888888 579999999999998877
Q ss_pred ecCCceEeeeecccCCCcccccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEeecCccccCCCceEEEEEC
Q 003171 349 NIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTS 428 (842)
Q Consensus 349 ~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~al~~s 428 (842)
.+|... |....|+
T Consensus 345 rGHsSy-------------------------------------------------------------------vn~a~ft 357 (508)
T KOG0275|consen 345 RGHSSY-------------------------------------------------------------------VNEATFT 357 (508)
T ss_pred cCcccc-------------------------------------------------------------------ccceEEc
Confidence 766532 2233466
Q ss_pred CCCc-EEEEeCCCeEEEEcC-CCCeeeeeec--CCccEEEEEe---cCCEEEEEecCcEEEEEeCCCccccccccc----
Q 003171 429 IDGM-IWTGGANGLLLQWDP-NGNRLQDFQY--LPFAVQCLCT---FGSQIWVGYMNGIVQVLDLEGNLLGGWVAH---- 497 (842)
Q Consensus 429 ~dg~-l~Sgs~DgtIrlWD~-~g~~l~~l~~--H~~~V~sls~---dG~~LasGs~DgtIrlWD~~g~~i~~l~gH---- 497 (842)
+||. ++++|.||+||+|+. +++|+.+|+. ...+|+++-. +..+++++....+|.+-++.|+.++++..-
T Consensus 358 ~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~qGQvVrsfsSGkREg 437 (508)
T KOG0275|consen 358 DDGHHIISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQGQVVRSFSSGKREG 437 (508)
T ss_pred CCCCeEEEecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEeccceEEeeeccCCccC
Confidence 7776 899999999999999 7999999984 4457888754 456888989999999999999988887532
Q ss_pred ccCEEEE-EeCCCEEEEEcCCCCeeeccccCC
Q 003171 498 SSPVIKM-AVGAGYIFTLANHGGIRGWNVTSP 528 (842)
Q Consensus 498 ~~~V~sl-a~dg~~l~S~S~DgtIrvWd~~~~ 528 (842)
.+.|.++ ++.|.+++..+.|+.+..+.+.+.
T Consensus 438 GdFi~~~lSpkGewiYcigED~vlYCF~~~sG 469 (508)
T KOG0275|consen 438 GDFINAILSPKGEWIYCIGEDGVLYCFSVLSG 469 (508)
T ss_pred CceEEEEecCCCcEEEEEccCcEEEEEEeecC
Confidence 2456664 589999999999999998887653
|
|
| >KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.7e-20 Score=190.57 Aligned_cols=272 Identities=18% Similarity=0.235 Sum_probs=193.6
Q ss_pred eEEEEecCC-EEEE--ecCCCEEEEeCCCCccccccccccccCCCCCCCCCCeeeeeecCCCeEEEEEcCCCCEEEEEeC
Q 003171 135 LRTIVCTEE-QLWA--GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGHR 211 (842)
Q Consensus 135 ~~~l~~~~~-~l~~--~~D~~vrvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~V~~la~dpdg~~LaSGs~ 211 (842)
+.++.++.+ .+++ |.|..|-+|+... .| ++... ..+| .++|+.+.+.+|+..|+|++.
T Consensus 50 I~~~~F~P~gs~~aSgG~Dr~I~LWnv~g----dc------------eN~~~--lkgH-sgAVM~l~~~~d~s~i~S~gt 110 (338)
T KOG0265|consen 50 IYTIKFHPDGSCFASGGSDRAIVLWNVYG----DC------------ENFWV--LKGH-SGAVMELHGMRDGSHILSCGT 110 (338)
T ss_pred EEEEEECCCCCeEeecCCcceEEEEeccc----cc------------cceee--eccc-cceeEeeeeccCCCEEEEecC
Confidence 556666644 5555 6799999999632 12 33222 2355 899999999999999999999
Q ss_pred CCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCCC-E-EEeeCCCcEEEEeCCCccceeecCCCceeeeEEE
Q 003171 212 DGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-L-WSGSEGGGIKIWPWEAIEKALSLKPEERHTAALI 289 (842)
Q Consensus 212 DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L-~SgS~DgtIrvWd~~t~~~~l~~~~~~~~~~~l~ 289 (842)
|.+++.||+++| +.++.+++|++-|+++.-+.-|. | .|||.|+|+||||+...+...++. .
T Consensus 111 Dk~v~~wD~~tG--------~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~-~-------- 173 (338)
T KOG0265|consen 111 DKTVRGWDAETG--------KRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFE-N-------- 173 (338)
T ss_pred CceEEEEecccc--------eeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhccc-c--------
Confidence 999999999999 78899999999999999555564 4 599999999999997644322111 0
Q ss_pred EeeceeecccceeccceeeeecCCEEEEEEcCCCCEEEEeC-CCcEEEEEccCCcEEEEeecCCceEeeeecccCCCccc
Q 003171 290 VERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAM 368 (842)
Q Consensus 290 ~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s-~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~~~ 368 (842)
...+..+.+...+..+.+|+ ++.|++||++.++.+.++.+|...+..+..++......
T Consensus 174 ---------------------kyqltAv~f~d~s~qv~sggIdn~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~ll 232 (338)
T KOG0265|consen 174 ---------------------KYQLTAVGFKDTSDQVISGGIDNDIKVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLL 232 (338)
T ss_pred ---------------------ceeEEEEEecccccceeeccccCceeeeccccCcceEEeecccCceeeEEeccCCCccc
Confidence 12355666777777888888 67899999999999999999988766666666555443
Q ss_pred ----ccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEeecCccccCCCceEEEEECCCCc-EEEEeCCCeEE
Q 003171 369 ----EDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGM-IWTGGANGLLL 443 (842)
Q Consensus 369 ----~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~al~~s~dg~-l~Sgs~DgtIr 443 (842)
+..++++.+..- ...+..+..+ .|+.- .| .......++||+++ +-+|+.|+.+.
T Consensus 233 snsMd~tvrvwd~rp~--~p~~R~v~if-------~g~~h---------nf---eknlL~cswsp~~~~i~ags~dr~vy 291 (338)
T KOG0265|consen 233 SNSMDNTVRVWDVRPF--APSQRCVKIF-------QGHIH---------NF---EKNLLKCSWSPNGTKITAGSADRFVY 291 (338)
T ss_pred cccccceEEEEEeccc--CCCCceEEEe-------ecchh---------hh---hhhcceeeccCCCCccccccccceEE
Confidence 333332222111 1111111111 11100 01 11223467889988 67889999999
Q ss_pred EEcCCC-CeeeeeecCCccEEEEEe--cCCEEEEEecCcEEEEE
Q 003171 444 QWDPNG-NRLQDFQYLPFAVQCLCT--FGSQIWVGYMNGIVQVL 484 (842)
Q Consensus 444 lWD~~g-~~l~~l~~H~~~V~sls~--dG~~LasGs~DgtIrlW 484 (842)
+||.++ .++..+.||...|+++.+ .-..|.++++|++|.|=
T Consensus 292 vwd~~~r~~lyklpGh~gsvn~~~Fhp~e~iils~~sdk~i~lg 335 (338)
T KOG0265|consen 292 VWDTTSRRILYKLPGHYGSVNEVDFHPTEPIILSCSSDKTIYLG 335 (338)
T ss_pred EeecccccEEEEcCCcceeEEEeeecCCCcEEEEeccCceeEee
Confidence 999965 788899999999999876 45699999999999863
|
|
| >PTZ00312 inositol-1,4,5-triphosphate 5-phosphatase; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.1e-22 Score=205.52 Aligned_cols=119 Identities=24% Similarity=0.288 Sum_probs=96.4
Q ss_pred ccCCCCeeEEEEEEeCeEEEEEeecCcCCcchH-----------HHHHHHHHHHHHhcCcCCCCCccchhccCCCceeee
Q 003171 673 AIGNKGAVGLRVRVYDRIMCFVNCHFAAHLEAV-----------NRRNADFDHVYRTMTFCRPSNLCSAAAAGASSVVQM 741 (842)
Q Consensus 673 ~~gnKG~v~i~~~i~~~~~~Fv~~HLaa~~~~~-----------~~Rn~~~~~I~~~l~f~~~~~~~~~~~~~~~~~~~~ 741 (842)
.++.||.+.+|++++++.|||||+||.++.+|+ +.|.++|.+|+.++.
T Consensus 64 kwSRKGfmrtrw~i~~t~fdfVNiHLFHDaSNl~A~~tSPSiYS~~RqrAL~~iL~r~~--------------------- 122 (356)
T PTZ00312 64 GRSRKGFLLLSLRLGTVVVNVLNVHLYNDDDNRVAAASSPSLYTGQRQEALLEAIAECS--------------------- 122 (356)
T ss_pred CccccceEEEEEEECCEEEEEEEeeccCCcchhhHHhcCCchhHHHHHHHHHHHHHHHh---------------------
Confidence 378999999999999999999999999998765 457888888887641
Q ss_pred cccCCCCCCCccCCCCCcCcccEEEEeccceeeecCCChHHHHH-------------HhhhcchHHHHHhhhHHHHhhc-
Q 003171 742 LRSTNPLSGLTVEGVPELSEADMVIFLGDFNYRLDGITYDEARD-------------FISQRCFDWLRERDQLRAEMEA- 807 (842)
Q Consensus 742 ~~~~~~~~~~~~~~~~~~~~~d~vf~~GDlNyRi~~~~~~~~~~-------------~i~~~~~~~L~~~DQL~~~~~~- 807 (842)
..+...+++|||||||||+++..+.+-.. +=...+|.+|+++|||.+|+++
T Consensus 123 ---------------~~~~~~~~lF~fGDfNyRld~~~~~e~L~ek~Ql~ve~~~g~~~~P~hf~~Lf~~dQl~rE~~~f 187 (356)
T PTZ00312 123 ---------------AFISPSDPLFIFGDFNVRLDGHNLLEWLKEKMQIDVKIEVKRVRAPDRFWELFTNPQTQGEIRRF 187 (356)
T ss_pred ---------------hccCCCCcEEEeccceeeeccccHHHHhcccccccccccccccCChHHHHHHhcChhhhHHHhhh
Confidence 11346799999999999999755533221 1113568999999999999995
Q ss_pred ------------CCcccCcccCCCCCCCCccc
Q 003171 808 ------------GNVFQGMREADIKFPPTYKF 827 (842)
Q Consensus 808 ------------~~~f~gf~E~~I~F~PTYK~ 827 (842)
.+.|.++.|+||+||||||-
T Consensus 188 d~e~q~l~~~va~~s~~eLaE~pI~FpPTYkr 219 (356)
T PTZ00312 188 DLELQRLMDVVAQQSGVELAEFAIRFPPTYPR 219 (356)
T ss_pred hhhhhhhhhhhhhhcccchhcccccCCCcchh
Confidence 56778999999999999994
|
|
| >cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.6e-19 Score=187.98 Aligned_cols=264 Identities=20% Similarity=0.279 Sum_probs=188.9
Q ss_pred eeEEEEecC--CEEEEe-cCCCEEEEeCCCCccccccccccccCCCCCCCCCCeeeeeecCCCeEEEEEcCCCCEEEEEe
Q 003171 134 FLRTIVCTE--EQLWAG-GENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGH 210 (842)
Q Consensus 134 ~~~~l~~~~--~~l~~~-~D~~vrvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~V~~la~dpdg~~LaSGs 210 (842)
.+.++.... +.++++ .|+.|++||+.+..... ....+ ..++.++.+.|+++.|++++
T Consensus 11 ~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~-------------------~~~~~-~~~i~~~~~~~~~~~l~~~~ 70 (289)
T cd00200 11 GVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLR-------------------TLKGH-TGPVRDVAASADGTYLASGS 70 (289)
T ss_pred CEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEE-------------------EEecC-CcceeEEEECCCCCEEEEEc
Confidence 355555543 455554 48999999987532111 11123 56788999999999999999
Q ss_pred CCCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCCCE-EEeeCCCcEEEEeCCCccceeecCCCceeeeEEE
Q 003171 211 RDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGDL-WSGSEGGGIKIWPWEAIEKALSLKPEERHTAALI 289 (842)
Q Consensus 211 ~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~L-~SgS~DgtIrvWd~~t~~~~l~~~~~~~~~~~l~ 289 (842)
.||.|++|++.++ +....+.+|...|.++.|++++++ ++++.|+.|++||+.+.+....+.
T Consensus 71 ~~~~i~i~~~~~~--------~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~---------- 132 (289)
T cd00200 71 SDKTIRLWDLETG--------ECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLR---------- 132 (289)
T ss_pred CCCeEEEEEcCcc--------cceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEec----------
Confidence 9999999999886 567778899999999999999874 567779999999996533221111
Q ss_pred EeeceeecccceeccceeeeecCCEEEEEEcCCCCEEEEeC-CCcEEEEEccCCcEEEEeecCCceEeeeecccCCCccc
Q 003171 290 VERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAM 368 (842)
Q Consensus 290 ~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s-~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~~~ 368 (842)
.+ ...+.++...+.+..++++. ++.|++||+.+++++..+..+......
T Consensus 133 ---------~~----------~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~----------- 182 (289)
T cd00200 133 ---------GH----------TDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNS----------- 182 (289)
T ss_pred ---------cC----------CCcEEEEEEcCcCCEEEEEcCCCcEEEEEccccccceeEecCccccce-----------
Confidence 01 23467777777777888877 789999999988887777644322111
Q ss_pred ccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEeec------CccccCCCceEEEEECCCCcEE-EEeCCCe
Q 003171 369 EDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAK------GGFGDDNRRTEALTTSIDGMIW-TGGANGL 441 (842)
Q Consensus 369 ~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~------g~~~~~~~~v~al~~s~dg~l~-Sgs~Dgt 441 (842)
+.+.+++...+++..++..+++.. ..+..+...+.++.+++++.++ +++.|+.
T Consensus 183 --------------------~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 242 (289)
T cd00200 183 --------------------VAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASGSEDGT 242 (289)
T ss_pred --------------------EEECCCcCEEEEecCCCcEEEEECCCCceecchhhcCCceEEEEEcCCCcEEEEEcCCCc
Confidence 222233333344444444444331 1233456688899999998854 5555999
Q ss_pred EEEEcC-CCCeeeeeecCCccEEEEEe--cCCEEEEEecCcEEEEEe
Q 003171 442 LLQWDP-NGNRLQDFQYLPFAVQCLCT--FGSQIWVGYMNGIVQVLD 485 (842)
Q Consensus 442 IrlWD~-~g~~l~~l~~H~~~V~sls~--dG~~LasGs~DgtIrlWD 485 (842)
|++||. +++.+..+..|...|.+++. ++++|++++.|+.|++||
T Consensus 243 i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 243 IRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLASGSADGTIRIWD 289 (289)
T ss_pred EEEEEcCCceeEEEccccCCcEEEEEECCCCCEEEEecCCCeEEecC
Confidence 999999 68888899999999998865 568999999999999996
|
|
| >KOG0288 consensus WD40 repeat protein TipD [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.3e-21 Score=207.19 Aligned_cols=254 Identities=17% Similarity=0.274 Sum_probs=186.0
Q ss_pred EEEE-ecCCCEEEEeCCCCccccccccccccCCCCCCCCCCeeeeeec-CCCeEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 003171 144 QLWA-GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKG-VSSVMCMVGDEASGVVWSGHRDGRIMCWKMN 221 (842)
Q Consensus 144 ~l~~-~~D~~vrvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~~~V~~la~dpdg~~LaSGs~DGtIrlWdl~ 221 (842)
.|.. |+|.-|++|+....... +...+.| .++|+++.++++++.+.+++.|+..|+|+++
T Consensus 189 tlatgg~Dr~Ik~W~v~~~k~~-------------------~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd 249 (459)
T KOG0288|consen 189 TLATGGSDRIIKLWNVLGEKSE-------------------LISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRLWNVD 249 (459)
T ss_pred hhhhcchhhhhhhhhcccchhh-------------------hhhhhhccCCCcceeeecCCCceEEeecCCCceeeeecc
Confidence 4444 67999999998532211 1122333 5689999999999999999999999999999
Q ss_pred CCccCCCCCcceeEEecccCCcEEEEEEecCCC-EEEeeCCCcEEEEeCCCccceeecCCCceeeeEEEEeeceeecccc
Q 003171 222 ARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSH 300 (842)
Q Consensus 222 ~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~~t~~~~l~~~~~~~~~~~l~~~~s~~~l~~~ 300 (842)
.. +...+|.||++.|+++-|..... .+|||.|.|||+||+....+..+..+...
T Consensus 250 ~~--------r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l~~S~----------------- 304 (459)
T KOG0288|consen 250 SL--------RLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVLPGSQ----------------- 304 (459)
T ss_pred ch--------hhhhhhcccccceeeehhhccccceeeccccchhhhhhhhhhheecccccccc-----------------
Confidence 86 77889999999999999987654 88999999999999976544332221110
Q ss_pred eeccceeeeecCCEEEEEEcCCCCEEEEeC-CCcEEEEEccCCcEEEEeecCCceEeeeecccCCCcccccceEEEEEec
Q 003171 301 LSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTS 379 (842)
Q Consensus 301 ~~~~~~~~~~s~~v~~las~~~~~~v~s~s-~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~ 379 (842)
-++| +.+ ...+.|+- |++|+.||.++..+..+...+
T Consensus 305 ----------cnDI---~~~--~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~g---------------------------- 341 (459)
T KOG0288|consen 305 ----------CNDI---VCS--ISDVISGHFDKKVRFWDIRSADKTRSVPLG---------------------------- 341 (459)
T ss_pred ----------ccce---Eec--ceeeeecccccceEEEeccCCceeeEeecC----------------------------
Confidence 0111 111 22233433 578999999887764433211
Q ss_pred CCCCccceeeeEeecCcceEEecCCcEEEEeecCccccCCCceEEEEECCCCc-EEEEeCCCeEEEEcCC-CCeeeeeec
Q 003171 380 SKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGM-IWTGGANGLLLQWDPN-GNRLQDFQY 457 (842)
Q Consensus 380 ~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~al~~s~dg~-l~Sgs~DgtIrlWD~~-g~~l~~l~~ 457 (842)
+.|.+|..+++|. |.+++.|.++++.|+. .+..++|..
T Consensus 342 ----------------------------------------g~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA 381 (459)
T KOG0288|consen 342 ----------------------------------------GRVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSA 381 (459)
T ss_pred ----------------------------------------cceeeEeeccCCeEEeeecCCCceeeeecccccEEEEeec
Confidence 2355677778887 8888999999999994 566666653
Q ss_pred ------CCccEEEEEecCCEEEEEecCcEEEEEeCC-Cccccccccccc--CEEEEEe--CCCEEEEEcCCCCeeecc
Q 003171 458 ------LPFAVQCLCTFGSQIWVGYMNGIVQVLDLE-GNLLGGWVAHSS--PVIKMAV--GAGYIFTLANHGGIRGWN 524 (842)
Q Consensus 458 ------H~~~V~sls~dG~~LasGs~DgtIrlWD~~-g~~i~~l~gH~~--~V~sla~--dg~~l~S~S~DgtIrvWd 524 (842)
|.-.--+++|+++|+++||.||.|+||++. |++-..+..... .|+++++ .|.++++++.++.+++|.
T Consensus 382 ~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Llsadk~~~v~lW~ 459 (459)
T KOG0288|consen 382 EGFKCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLLSADKQKAVTLWT 459 (459)
T ss_pred cccccccccceeEECCCCceeeeccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCCchhhcccCCcceEecC
Confidence 332222467899999999999999999986 788777665444 5999996 578899999999999993
|
|
| >KOG0283 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.1e-20 Score=216.22 Aligned_cols=241 Identities=16% Similarity=0.147 Sum_probs=180.8
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCc------c------------------------------------CC-
Q 003171 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARL------L------------------------------------DS- 227 (842)
Q Consensus 191 ~~~V~~la~dpdg~~LaSGs~DGtIrlWdl~~g~------~------------------------------------~~- 227 (842)
.++|+|+.|++||++||||+.||.||||.+.... . ..
T Consensus 267 ~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~~s~ 346 (712)
T KOG0283|consen 267 KGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGSQSP 346 (712)
T ss_pred CCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccccccCCc
Confidence 7899999999999999999999999999976610 0 00
Q ss_pred -------CC--CcceeEEecccCCcEEEEEEecCCCEEEeeCCCcEEEEeCCCccceeecCCCceeeeEEEEeeceeecc
Q 003171 228 -------DD--GFGEVLSWQAHRGPVLSLCISSYGDLWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLR 298 (842)
Q Consensus 228 -------~~--~~~~~~~l~gH~~~V~slafs~dG~L~SgS~DgtIrvWd~~t~~~~l~~~~~~~~~~~l~~~~s~~~l~ 298 (842)
.. .-+..+.++||.+-|..|.||.++-|+|+|.|+|||||.+...++...+
T Consensus 347 ~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~fLLSSSMDKTVRLWh~~~~~CL~~F-------------------- 406 (712)
T KOG0283|consen 347 CVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNNFLLSSSMDKTVRLWHPGRKECLKVF-------------------- 406 (712)
T ss_pred cccCCCccccccccchhhhhccchhheecccccCCeeEeccccccEEeecCCCcceeeEE--------------------
Confidence 00 1122356789999999999999999999999999999999765433222
Q ss_pred cceeccceeeeecCCEEEEEEcCCC-CEEEEeC-CCcEEEEEccCCcEEEEeecCCceEeeeecccCCCcccccceEEEE
Q 003171 299 SHLSVNGFSSILTSDIKNLLSDHSR-AKVWSAG-FLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKI 376 (842)
Q Consensus 299 ~~~~~~~~~~~~s~~v~~las~~~~-~~v~s~s-~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~ 376 (842)
.+..-|+|+++.|-+ ..+.||+ |+.++||++...++. .
T Consensus 407 ----------~HndfVTcVaFnPvDDryFiSGSLD~KvRiWsI~d~~Vv------------------------------~ 446 (712)
T KOG0283|consen 407 ----------SHNDFVTCVAFNPVDDRYFISGSLDGKVRLWSISDKKVV------------------------------D 446 (712)
T ss_pred ----------ecCCeeEEEEecccCCCcEeecccccceEEeecCcCeeE------------------------------e
Confidence 235679999998854 4566777 789999998654331 1
Q ss_pred EecCCCCccceeeeEeecCcceEEecCCcEEEEeecCccccCCCceEEEEECCCCc-EEEEeCCCeEEEEcCCCCeee-e
Q 003171 377 VTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGM-IWTGGANGLLLQWDPNGNRLQ-D 454 (842)
Q Consensus 377 ~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~al~~s~dg~-l~Sgs~DgtIrlWD~~g~~l~-~ 454 (842)
|... ..-|+++.+.|||+ .+.|+-+|.+++++..|..++ .
T Consensus 447 W~Dl--------------------------------------~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~ 488 (712)
T KOG0283|consen 447 WNDL--------------------------------------RDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSD 488 (712)
T ss_pred ehhh--------------------------------------hhhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEe
Confidence 1111 13467899999999 688999999999999775443 2
Q ss_pred ee---------cCCccEEEEEe---cCCEEEEEecCcEEEEEeCC-CcccccccccccC---EEE-EEeCCCEEEEEcCC
Q 003171 455 FQ---------YLPFAVQCLCT---FGSQIWVGYMNGIVQVLDLE-GNLLGGWVAHSSP---VIK-MAVGAGYIFTLANH 517 (842)
Q Consensus 455 l~---------~H~~~V~sls~---dG~~LasGs~DgtIrlWD~~-g~~i~~l~gH~~~---V~s-la~dg~~l~S~S~D 517 (842)
+. .|. .|+.|-+ +...|.+.+.|..|||+|.. .+++..|+|+.+. +.+ +..||++|+++|.|
T Consensus 489 ~~I~~~~~Kk~~~~-rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~seD 567 (712)
T KOG0283|consen 489 FHIRLHNKKKKQGK-RITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVSASED 567 (712)
T ss_pred eeEeeccCccccCc-eeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCCcceeeeEccCCCEEEEeecC
Confidence 22 133 7998854 23467888999999999986 5788999987653 332 33699999999999
Q ss_pred CCeeeccccCCCC
Q 003171 518 GGIRGWNVTSPGP 530 (842)
Q Consensus 518 gtIrvWd~~~~~~ 530 (842)
..|.+|+...+..
T Consensus 568 s~VYiW~~~~~~~ 580 (712)
T KOG0283|consen 568 SWVYIWKNDSFNS 580 (712)
T ss_pred ceEEEEeCCCCcc
Confidence 9999999765443
|
|
| >KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.86 E-value=7.9e-21 Score=212.15 Aligned_cols=229 Identities=20% Similarity=0.338 Sum_probs=180.8
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEecccCCcEEE-EEEec--CCCEEEeeCCCcEEEE
Q 003171 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLS-LCISS--YGDLWSGSEGGGIKIW 267 (842)
Q Consensus 191 ~~~V~~la~dpdg~~LaSGs~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~s-lafs~--dG~L~SgS~DgtIrvW 267 (842)
.+-|..+++- ++..+++||.||++|+|+-.... .-+...+++|.+.|.. +++-+ .|+|++|+.|.+|.+|
T Consensus 14 ~~DVr~v~~~-~~~~i~s~sRd~t~~vw~~~~~~------~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v~ 86 (745)
T KOG0301|consen 14 KSDVRAVAVT-DGVCIISGSRDGTVKVWAKKGKQ------YLETHAFEGPKGFIANSICYAESDKGRLVVGGMDTTIIVF 86 (745)
T ss_pred ccchheeEec-CCeEEeecCCCCceeeeeccCcc------cccceecccCcceeeccceeccccCcceEeecccceEEEE
Confidence 5567666665 45689999999999999976531 2334568899998877 87765 3459999999999999
Q ss_pred eCCCccceeecCCCceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcCCCCEEEEeCC-CcEEEEEccCCcEEE
Q 003171 268 PWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGF-LSFALWDARTRELLK 346 (842)
Q Consensus 268 d~~t~~~~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s~-~tI~lWD~~tg~~l~ 346 (842)
.+.+..+... |++| .++|.++.....+. +.|++| .|+++|-. +++..
T Consensus 87 ~~~~~~P~~~-------------------LkgH----------~snVC~ls~~~~~~-~iSgSWD~TakvW~~--~~l~~ 134 (745)
T KOG0301|consen 87 KLSQAEPLYT-------------------LKGH----------KSNVCSLSIGEDGT-LISGSWDSTAKVWRI--GELVY 134 (745)
T ss_pred ecCCCCchhh-------------------hhcc----------ccceeeeecCCcCc-eEecccccceEEecc--hhhhc
Confidence 9876554333 3334 45666677665554 778885 68999954 22211
Q ss_pred EeecCCceEeeeecccCCCcccccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEeecCccccCCCceEEEE
Q 003171 347 VFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALT 426 (842)
Q Consensus 347 ~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~al~ 426 (842)
+ +.+|...|.+++
T Consensus 135 ~-------------------------------------------------------------------l~gH~asVWAv~ 147 (745)
T KOG0301|consen 135 S-------------------------------------------------------------------LQGHTASVWAVA 147 (745)
T ss_pred c-------------------------------------------------------------------cCCcchheeeee
Confidence 1 234555666777
Q ss_pred ECCCCcEEEEeCCCeEEEEcCCCCeeeeeecCCccEEEEEe-cCCEEEEEecCcEEEEEeCCCcccccccccccCEEEEE
Q 003171 427 TSIDGMIWTGGANGLLLQWDPNGNRLQDFQYLPFAVQCLCT-FGSQIWVGYMNGIVQVLDLEGNLLGGWVAHSSPVIKMA 505 (842)
Q Consensus 427 ~s~dg~l~Sgs~DgtIrlWD~~g~~l~~l~~H~~~V~sls~-dG~~LasGs~DgtIrlWD~~g~~i~~l~gH~~~V~sla 505 (842)
.-|++.++|||.|++||+|.. |+++++|.||++-|+.++. ++..++|++.||.|++||++|.++..+.||++-|++++
T Consensus 148 ~l~e~~~vTgsaDKtIklWk~-~~~l~tf~gHtD~VRgL~vl~~~~flScsNDg~Ir~w~~~ge~l~~~~ghtn~vYsis 226 (745)
T KOG0301|consen 148 SLPENTYVTGSADKTIKLWKG-GTLLKTFSGHTDCVRGLAVLDDSHFLSCSNDGSIRLWDLDGEVLLEMHGHTNFVYSIS 226 (745)
T ss_pred ecCCCcEEeccCcceeeeccC-CchhhhhccchhheeeeEEecCCCeEeecCCceEEEEeccCceeeeeeccceEEEEEE
Confidence 778889999999999999997 8999999999999999986 67789999999999999999999999999999999998
Q ss_pred --eCCCEEEEEcCCCCeeecccc
Q 003171 506 --VGAGYIFTLANHGGIRGWNVT 526 (842)
Q Consensus 506 --~dg~~l~S~S~DgtIrvWd~~ 526 (842)
.+++.++|+|.|+++|+|+..
T Consensus 227 ~~~~~~~Ivs~gEDrtlriW~~~ 249 (745)
T KOG0301|consen 227 MALSDGLIVSTGEDRTLRIWKKD 249 (745)
T ss_pred ecCCCCeEEEecCCceEEEeecC
Confidence 477889999999999999943
|
|
| >PTZ00421 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=7.1e-20 Score=211.26 Aligned_cols=248 Identities=15% Similarity=0.174 Sum_probs=169.2
Q ss_pred CeEEEEEcCCCCEEEEEeCCCcEEEEECCCCcc-----CCCCCcceeEEecccCCcEEEEEEec-CCC-EEEeeCCCcEE
Q 003171 193 SVMCMVGDEASGVVWSGHRDGRIMCWKMNARLL-----DSDDGFGEVLSWQAHRGPVLSLCISS-YGD-LWSGSEGGGIK 265 (842)
Q Consensus 193 ~V~~la~dpdg~~LaSGs~DGtIrlWdl~~g~~-----~~~~~~~~~~~l~gH~~~V~slafs~-dG~-L~SgS~DgtIr 265 (842)
.|.+...++++..+++++.+..+..|+..++.. +..........+.||+++|++++|+| ++. |+|||.|++|+
T Consensus 22 ~i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIk 101 (493)
T PTZ00421 22 NVTPSTALWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQKLFTASEDGTIM 101 (493)
T ss_pred ccccccccCCCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEE
Confidence 455566677777888888888888898765421 00000011224789999999999999 776 89999999999
Q ss_pred EEeCCCccceeecCCCceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcCCC-CEEEEeC-CCcEEEEEccCCc
Q 003171 266 IWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSR-AKVWSAG-FLSFALWDARTRE 343 (842)
Q Consensus 266 vWd~~t~~~~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~-~~v~s~s-~~tI~lWD~~tg~ 343 (842)
+||+.+....... ... ...+.+| ...|.++++.+.+ ..+++++ |++|+|||+.+++
T Consensus 102 IWdi~~~~~~~~~---~~~---------l~~L~gH----------~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~ 159 (493)
T PTZ00421 102 GWGIPEEGLTQNI---SDP---------IVHLQGH----------TKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGK 159 (493)
T ss_pred EEecCCCcccccc---Ccc---------eEEecCC----------CCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCe
Confidence 9999653210000 000 0112233 4567788888764 5777766 6799999999877
Q ss_pred EEEEeecCCceEeeeecccCCCcccccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEeecCccccCCCceE
Q 003171 344 LLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTE 423 (842)
Q Consensus 344 ~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~ 423 (842)
.+..+.. |...|.
T Consensus 160 ~~~~l~~-------------------------------------------------------------------h~~~V~ 172 (493)
T PTZ00421 160 AVEVIKC-------------------------------------------------------------------HSDQIT 172 (493)
T ss_pred EEEEEcC-------------------------------------------------------------------CCCceE
Confidence 6444322 223456
Q ss_pred EEEECCCCc-EEEEeCCCeEEEEcC-CCCeeeeeecCCccEE--EE-EecCCEEEEEe----cCcEEEEEeCC--Ccccc
Q 003171 424 ALTTSIDGM-IWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQ--CL-CTFGSQIWVGY----MNGIVQVLDLE--GNLLG 492 (842)
Q Consensus 424 al~~s~dg~-l~Sgs~DgtIrlWD~-~g~~l~~l~~H~~~V~--sl-s~dG~~LasGs----~DgtIrlWD~~--g~~i~ 492 (842)
+++++|+|. |++|+.|++|++||+ +++.+.++.+|...+. ++ .+++.+|++++ .|++|+|||+. .+++.
T Consensus 173 sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~ 252 (493)
T PTZ00421 173 SLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYS 252 (493)
T ss_pred EEEEECCCCEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCcee
Confidence 788889887 789999999999999 7899999999987543 22 34556666543 48999999986 34455
Q ss_pred ccccccc-CEEEEE--eCCCEEEEEc-CCCCeeeccccCCC
Q 003171 493 GWVAHSS-PVIKMA--VGAGYIFTLA-NHGGIRGWNVTSPG 529 (842)
Q Consensus 493 ~l~gH~~-~V~sla--~dg~~l~S~S-~DgtIrvWd~~~~~ 529 (842)
....|.. .+.... ++++.+++++ .|+.||+|++....
T Consensus 253 ~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~ 293 (493)
T PTZ00421 253 TVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNER 293 (493)
T ss_pred EeccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCc
Confidence 4444443 343333 4788888887 59999999987643
|
|
| >KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.8e-20 Score=191.95 Aligned_cols=277 Identities=14% Similarity=0.144 Sum_probs=182.9
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCc----------cCCCCCcceeEEecccCCcEEEEEEecCCC-EEEee
Q 003171 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARL----------LDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGS 259 (842)
Q Consensus 191 ~~~V~~la~dpdg~~LaSGs~DGtIrlWdl~~g~----------~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS 259 (842)
.+++.|.+|++||.++||||.|..||+.|++.-. ++....-..+++|-.|...|+.|.|.|... |+|||
T Consensus 112 K~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre~ILiS~s 191 (430)
T KOG0640|consen 112 KSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRETILISGS 191 (430)
T ss_pred ccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchhheEEecc
Confidence 8899999999999999999999999999987210 011122234678889999999999999877 78999
Q ss_pred CCCcEEEEeCCC--ccceeecCCCceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcCCCCEEEEeCCC-cEEE
Q 003171 260 EGGGIKIWPWEA--IEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGFL-SFAL 336 (842)
Q Consensus 260 ~DgtIrvWd~~t--~~~~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s~~-tI~l 336 (842)
.|+|||++|... .++.++... ....++++.+.+.|..|..+++. +++|
T Consensus 192 rD~tvKlFDfsK~saKrA~K~~q-----------------------------d~~~vrsiSfHPsGefllvgTdHp~~rl 242 (430)
T KOG0640|consen 192 RDNTVKLFDFSKTSAKRAFKVFQ-----------------------------DTEPVRSISFHPSGEFLLVGTDHPTLRL 242 (430)
T ss_pred CCCeEEEEecccHHHHHHHHHhh-----------------------------ccceeeeEeecCCCceEEEecCCCceeE
Confidence 999999999853 111121111 13368889999999999999874 8999
Q ss_pred EEccCCcEEEEeecCCceEeeeecccCCCcccccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEee--cCc
Q 003171 337 WDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAA--KGG 414 (842)
Q Consensus 337 WD~~tg~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~--~g~ 414 (842)
||+.|-+|...-.++.|. ..++..+..+..+..-++++.||..++|. .+.
T Consensus 243 Ydv~T~QcfvsanPd~qh----------------------------t~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~r 294 (430)
T KOG0640|consen 243 YDVNTYQCFVSANPDDQH----------------------------TGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNR 294 (430)
T ss_pred EeccceeEeeecCccccc----------------------------ccceeEEEecCCccEEEEeccCCcEEeeccccHH
Confidence 999998874332222211 01112233444444446667777666664 122
Q ss_pred ----ccc--CCCceEEEEECCCCc-EEEEeCCCeEEEEcC-CCCeeeeeecCC--ccE----EEEEe-cCCEEEEEe-cC
Q 003171 415 ----FGD--DNRRTEALTTSIDGM-IWTGGANGLLLQWDP-NGNRLQDFQYLP--FAV----QCLCT-FGSQIWVGY-MN 478 (842)
Q Consensus 415 ----~~~--~~~~v~al~~s~dg~-l~Sgs~DgtIrlWD~-~g~~l~~l~~H~--~~V----~sls~-dG~~LasGs-~D 478 (842)
+.. ....|.+..|+.+|+ ++|.+.|.+|+||.+ +|++++++.|-. +++ .++.- ...|+..-. ..
T Consensus 295 Cv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas 374 (430)
T KOG0640|consen 295 CVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTGRMLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEAS 374 (430)
T ss_pred HHHHHHhhcCCceeeeEEEccCCeEEeecCCcceeeeeeecCCceEEEEecCCcccchhhhhhhhhcCccceEEcccccc
Confidence 222 123566677888777 677777888888888 778888877631 111 11111 233555444 25
Q ss_pred cEEEEEeCCC-cccccc-cccccCEEEEE--eCCCEEEEEcCCCCeeecc
Q 003171 479 GIVQVLDLEG-NLLGGW-VAHSSPVIKMA--VGAGYIFTLANHGGIRGWN 524 (842)
Q Consensus 479 gtIrlWD~~g-~~i~~l-~gH~~~V~sla--~dg~~l~S~S~DgtIrvWd 524 (842)
+.+.-||... ..+..| .||+++|..+. +.+-.++++|.|-.+|+|-
T Consensus 375 ~slcsWdaRtadr~~l~slgHn~a~R~i~HSP~~p~FmTcsdD~raRFWy 424 (430)
T KOG0640|consen 375 NSLCSWDARTADRVALLSLGHNGAVRWIVHSPVEPAFMTCSDDFRARFWY 424 (430)
T ss_pred CceeeccccchhhhhhcccCCCCCceEEEeCCCCCceeeecccceeeeee
Confidence 6677788653 222222 47888888876 4455677888888888885
|
|
| >KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.86 E-value=9.9e-20 Score=206.99 Aligned_cols=277 Identities=16% Similarity=0.160 Sum_probs=191.3
Q ss_pred CCCEEEEeCCCCccccccccccccCCCCCCCCCCeeeeeecCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCC
Q 003171 150 ENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDD 229 (842)
Q Consensus 150 D~~vrvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~V~~la~dpdg~~LaSGs~DGtIrlWdl~~g~~~~~~ 229 (842)
.|.|++||..=....- -|-+ | .+||..+.|.|++-+.+||+.|-+||+|+..+.
T Consensus 30 sG~IQlWDYRM~tli~-----------------rFde--H-dGpVRgv~FH~~qplFVSGGDDykIkVWnYk~r------ 83 (1202)
T KOG0292|consen 30 SGVIQLWDYRMGTLID-----------------RFDE--H-DGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTR------ 83 (1202)
T ss_pred CceeeeehhhhhhHHh-----------------hhhc--c-CCccceeeecCCCCeEEecCCccEEEEEecccc------
Confidence 5789999975322211 1333 3 889999999999999999999999999999886
Q ss_pred CcceeEEecccCCcEEEEEEecCCC-EEEeeCCCcEEEEeCCCccceeecCCCceeeeEEEEeeceeecccceeccceee
Q 003171 230 GFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSS 308 (842)
Q Consensus 230 ~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~~t~~~~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~ 308 (842)
+++.+|.||-+.|..+.|++.-- ++|+|+|.|||||++.+..+.-.++ ||
T Consensus 84 --rclftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~iavlt-------------------GH-------- 134 (1202)
T KOG0292|consen 84 --RCLFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAVLT-------------------GH-------- 134 (1202)
T ss_pred --eehhhhccccceeEEeeccCCCceEEEccCCCeEEEEeccCCceEEEEe-------------------cC--------
Confidence 78899999999999999998643 8899999999999998755433332 33
Q ss_pred eecCCEEEEEEcCCCCEEEEeC-CCcEEEEEccCCcEEEEeecCCceEeeeecccC-CCcccccceEEEEEecCCCCccc
Q 003171 309 ILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVFNIDGQIENRVDMSLL-PDFAMEDEFKTKIVTSSKKDKAQ 386 (842)
Q Consensus 309 ~~s~~v~~las~~~~~~v~s~s-~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~-~~~~~~~~~~~~~~s~~~~~~~~ 386 (842)
+..|.|..+.+....|.|++ |.|||+||+..=+ .+...+ +..+..+..... .+..-..+.-++.+-.. .++.+
T Consensus 135 --nHYVMcAqFhptEDlIVSaSLDQTVRVWDisGLR-kk~~~p-g~~e~~~~~~~~~~dLfg~~DaVVK~VLEG-HDRGV 209 (1202)
T KOG0292|consen 135 --NHYVMCAQFHPTEDLIVSASLDQTVRVWDISGLR-KKNKAP-GSLEDQMRGQQGNSDLFGQTDAVVKHVLEG-HDRGV 209 (1202)
T ss_pred --ceEEEeeccCCccceEEEecccceEEEEeecchh-ccCCCC-CCchhhhhccccchhhcCCcCeeeeeeecc-ccccc
Confidence 33577777888888999998 8899999985311 111111 111111111111 11100001111121111 23444
Q ss_pred eeeeEeecCcceEEecCCcEEEEee--------cCccccCCCceEEEEECCCCc-EEEEeCCCeEEEEcC-CCCeeeeee
Q 003171 387 SSFGFFQRSRNAIMGAADAVRRVAA--------KGGFGDDNRRTEALTTSIDGM-IWTGGANGLLLQWDP-NGNRLQDFQ 456 (842)
Q Consensus 387 ~s~~~~~~~~~~~~g~~~~v~~v~~--------~g~~~~~~~~v~al~~s~dg~-l~Sgs~DgtIrlWD~-~g~~l~~l~ 456 (842)
+-.+|.+.-+....|+.|-...+|. ..++.+|...|.++.|.|... ++|.|.|++||+||+ ....+++|.
T Consensus 210 NwaAfhpTlpliVSG~DDRqVKlWrmnetKaWEvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kRt~v~tfr 289 (1202)
T KOG0292|consen 210 NWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKRTSVQTFR 289 (1202)
T ss_pred ceEEecCCcceEEecCCcceeeEEEeccccceeehhhhcccCCcceEEecCccceeEecCCCccEEEEecccccceeeee
Confidence 4566777666777788776555443 245678999999999999765 789999999999999 578999998
Q ss_pred cCCccEEEEEec--CCEEEEEecCcEEEEEeCC
Q 003171 457 YLPFAVQCLCTF--GSQIWVGYMNGIVQVLDLE 487 (842)
Q Consensus 457 ~H~~~V~sls~d--G~~LasGs~DgtIrlWD~~ 487 (842)
-..++-++++.. ...+++ +.|+.+.|+-++
T Consensus 290 rendRFW~laahP~lNLfAA-gHDsGm~VFkle 321 (1202)
T KOG0292|consen 290 RENDRFWILAAHPELNLFAA-GHDSGMIVFKLE 321 (1202)
T ss_pred ccCCeEEEEEecCCcceeee-ecCCceEEEEEc
Confidence 767777777654 555555 567777788765
|
|
| >PTZ00420 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.9e-19 Score=209.06 Aligned_cols=223 Identities=17% Similarity=0.153 Sum_probs=158.9
Q ss_pred EEeCCCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecC-CC-EEEeeCCCcEEEEeCCCccceeecCCCceee
Q 003171 208 SGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSY-GD-LWSGSEGGGIKIWPWEAIEKALSLKPEERHT 285 (842)
Q Consensus 208 SGs~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~d-G~-L~SgS~DgtIrvWd~~t~~~~l~~~~~~~~~ 285 (842)
.|+.++.|++|++... ..+..+.||.++|.+++|+|+ +. |+|||.|++|||||+.+.........+ ..
T Consensus 49 gGG~~gvI~L~~~~r~--------~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~--p~ 118 (568)
T PTZ00420 49 GGGLIGAIRLENQMRK--------PPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKD--PQ 118 (568)
T ss_pred CCCceeEEEeeecCCC--------ceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCcccccccc--ce
Confidence 3778899999998764 567789999999999999997 55 789999999999999653211000000 00
Q ss_pred eEEEEeeceeecccceeccceeeeecCCEEEEEEcCCCCE-EEEeC-CCcEEEEEccCCcEEEEeecCCceEeeeecccC
Q 003171 286 AALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAK-VWSAG-FLSFALWDARTRELLKVFNIDGQIENRVDMSLL 363 (842)
Q Consensus 286 ~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~-v~s~s-~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~ 363 (842)
..+.+| ...|.++++++.+.. +++++ |++|+|||+++++.+..+.
T Consensus 119 ---------~~L~gH----------~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~-------------- 165 (568)
T PTZ00420 119 ---------CILKGH----------KKKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQIN-------------- 165 (568)
T ss_pred ---------EEeecC----------CCcEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEe--------------
Confidence 011222 456888888887765 45655 7899999999876533221
Q ss_pred CCcccccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEeecCccccCCCceEEEEECCCCc-EEEEeCCCeE
Q 003171 364 PDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGM-IWTGGANGLL 442 (842)
Q Consensus 364 ~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~al~~s~dg~-l~Sgs~DgtI 442 (842)
+...|.+++|+++|. |++++.|++|
T Consensus 166 ------------------------------------------------------~~~~V~SlswspdG~lLat~s~D~~I 191 (568)
T PTZ00420 166 ------------------------------------------------------MPKKLSSLKWNIKGNLLSGTCVGKHM 191 (568)
T ss_pred ------------------------------------------------------cCCcEEEEEECCCCCEEEEEecCCEE
Confidence 012355778899998 5678889999
Q ss_pred EEEcC-CCCeeeeeecCCccEEE--E-----EecCCEEEEEecC----cEEEEEeCC--Ccccccccc--cccCEEEEE-
Q 003171 443 LQWDP-NGNRLQDFQYLPFAVQC--L-----CTFGSQIWVGYMN----GIVQVLDLE--GNLLGGWVA--HSSPVIKMA- 505 (842)
Q Consensus 443 rlWD~-~g~~l~~l~~H~~~V~s--l-----s~dG~~LasGs~D----gtIrlWD~~--g~~i~~l~g--H~~~V~sla- 505 (842)
++||+ +++++.++.+|.+.+.+ + +.++.+|++++.| ++|+|||+. ++++..+.. +.+.+....
T Consensus 192 rIwD~Rsg~~i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D 271 (568)
T PTZ00420 192 HIIDPRKQEIASSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYD 271 (568)
T ss_pred EEEECCCCcEEEEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeee
Confidence 99999 78999999999886543 2 2467899988876 489999987 456655433 333333332
Q ss_pred e-CCCEEEEEcCCCCeeeccccC
Q 003171 506 V-GAGYIFTLANHGGIRGWNVTS 527 (842)
Q Consensus 506 ~-dg~~l~S~S~DgtIrvWd~~~ 527 (842)
. ++.++++|+.|++||+|++..
T Consensus 272 ~~tg~l~lsGkGD~tIr~~e~~~ 294 (568)
T PTZ00420 272 ESTGLIYLIGKGDGNCRYYQHSL 294 (568)
T ss_pred CCCCCEEEEEECCCeEEEEEccC
Confidence 2 477889999999999999753
|
|
| >PTZ00420 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.8e-19 Score=209.23 Aligned_cols=227 Identities=15% Similarity=0.137 Sum_probs=155.0
Q ss_pred CCCeEEEEEcCC-CCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCCC--EEEeeCCCcEEEE
Q 003171 191 VSSVMCMVGDEA-SGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD--LWSGSEGGGIKIW 267 (842)
Q Consensus 191 ~~~V~~la~dpd-g~~LaSGs~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~--L~SgS~DgtIrvW 267 (842)
.++|.+++|+|+ +.+|+||+.||+|++||+.++.............+.+|.+.|++|+|+|++. |+|||.|++|+||
T Consensus 74 ~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS~DgtIrIW 153 (568)
T PTZ00420 74 TSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNYYIMCSSGFDSFVNIW 153 (568)
T ss_pred CCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECCCCCeEEEEEeCCCeEEEE
Confidence 789999999996 7899999999999999997641000000123446789999999999999986 4799999999999
Q ss_pred eCCCccceeecCCCceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcCCCCEEEEeC-CCcEEEEEccCCcEEE
Q 003171 268 PWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLK 346 (842)
Q Consensus 268 d~~t~~~~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s-~~tI~lWD~~tg~~l~ 346 (842)
|+.++.....+. + ...+.++..++++..+++++ +++|+|||+++++++.
T Consensus 154 Dl~tg~~~~~i~--------------------~----------~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~ 203 (568)
T PTZ00420 154 DIENEKRAFQIN--------------------M----------PKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIAS 203 (568)
T ss_pred ECCCCcEEEEEe--------------------c----------CCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEE
Confidence 997654222111 0 22467788888888888765 6799999999999887
Q ss_pred EeecCCceEeeeecccCCCcccccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEeecCccccCCCceEEEE
Q 003171 347 VFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALT 426 (842)
Q Consensus 347 ~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~al~ 426 (842)
++.+|..... .+ .+....
T Consensus 204 tl~gH~g~~~-------------------------------------------------s~-------------~v~~~~ 221 (568)
T PTZ00420 204 SFHIHDGGKN-------------------------------------------------TK-------------NIWIDG 221 (568)
T ss_pred EEecccCCce-------------------------------------------------eE-------------EEEeee
Confidence 7765432100 00 001122
Q ss_pred ECCCC-cEEEEeCCC----eEEEEcCC--CCeeeeeecC--CccEEEE-Ee-cCCEEEEEecCcEEEEEeCC-Cc--ccc
Q 003171 427 TSIDG-MIWTGGANG----LLLQWDPN--GNRLQDFQYL--PFAVQCL-CT-FGSQIWVGYMNGIVQVLDLE-GN--LLG 492 (842)
Q Consensus 427 ~s~dg-~l~Sgs~Dg----tIrlWD~~--g~~l~~l~~H--~~~V~sl-s~-dG~~LasGs~DgtIrlWD~~-g~--~i~ 492 (842)
+++++ .|++++.|+ +|+|||+. ++++..+..+ .+.+..+ .+ +|.++++|+.|++|++|++. +. .+.
T Consensus 222 fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~lsGkGD~tIr~~e~~~~~~~~l~ 301 (568)
T PTZ00420 222 LGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIYLIGKGDGNCRYYQHSLGSIRKVN 301 (568)
T ss_pred EcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCCEEEEEECCCeEEEEEccCCcEEeec
Confidence 44554 477777664 79999994 5677665433 2333333 22 47899999999999999986 32 233
Q ss_pred cccccccCEEEEEeCCCE
Q 003171 493 GWVAHSSPVIKMAVGAGY 510 (842)
Q Consensus 493 ~l~gH~~~V~sla~dg~~ 510 (842)
.+. |..++.++++-++.
T Consensus 302 ~~~-s~~p~~g~~f~Pkr 318 (568)
T PTZ00420 302 EYK-SCSPFRSFGFLPKQ 318 (568)
T ss_pred ccc-cCCCccceEEcccc
Confidence 333 56677777754443
|
|
| >KOG0300 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.85 E-value=3.6e-20 Score=189.88 Aligned_cols=289 Identities=17% Similarity=0.234 Sum_probs=200.8
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCCCE-EEeeCCCcEEEEeC
Q 003171 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGDL-WSGSEGGGIKIWPW 269 (842)
Q Consensus 191 ~~~V~~la~dpdg~~LaSGs~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~L-~SgS~DgtIrvWd~ 269 (842)
...|.-++.+....++.|+|.|.+.++|.+++| .++.+..||.+.|++|.|++.+.| +++|.|++..||..
T Consensus 148 kDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg--------~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~ 219 (481)
T KOG0300|consen 148 KDGIWHVAADSTQPICGTASADHTARIWSLESG--------ACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHIWKA 219 (481)
T ss_pred ccceeeehhhcCCcceeecccccceeEEeeccc--------cceeeecccccceeeEEeccccceEEEccCCcchHHHHH
Confidence 667888988877789999999999999999998 789999999999999999999985 69999999999983
Q ss_pred CC----cc----ceeecCCCceee----e----EEEEee-----ceeecccceeccceeeeecCCEEEEEEcCCCCEEEE
Q 003171 270 EA----IE----KALSLKPEERHT----A----ALIVER-----SYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWS 328 (842)
Q Consensus 270 ~t----~~----~~l~~~~~~~~~----~----~l~~~~-----s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s 328 (842)
.- .. ...+...+..+. . ....+. .+..+.+|. .-|.+.---.++..+.+
T Consensus 220 av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~----------~vV~a~dWL~gg~Q~vT 289 (481)
T KOG0300|consen 220 AVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHR----------AVVSACDWLAGGQQMVT 289 (481)
T ss_pred hhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccc----------cceEehhhhcCcceeee
Confidence 21 11 000000000000 0 000000 011111110 00111001124566777
Q ss_pred eCC-CcEEEEEccCCcEEEEeecCCceEeeeecccCCCcccccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEE
Q 003171 329 AGF-LSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVR 407 (842)
Q Consensus 329 ~s~-~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~ 407 (842)
++| .|..+||++||+++..|.+|.+..+-... .+..+.+++.+.+..+
T Consensus 290 aSWDRTAnlwDVEtge~v~~LtGHd~ELtHcst-------------------------------HptQrLVvTsSrDtTF 338 (481)
T KOG0300|consen 290 ASWDRTANLWDVETGEVVNILTGHDSELTHCST-------------------------------HPTQRLVVTSSRDTTF 338 (481)
T ss_pred eeccccceeeeeccCceeccccCcchhcccccc-------------------------------CCcceEEEEeccCcee
Confidence 775 68999999999999999888763211110 1111223444455555
Q ss_pred EEee-------cCccccCCCceEEEEECCCCcEEEEeCCCeEEEEcC-C-CCeeeeeecCCccEEEEEe--cCCEEEEEe
Q 003171 408 RVAA-------KGGFGDDNRRTEALTTSIDGMIWTGGANGLLLQWDP-N-GNRLQDFQYLPFAVQCLCT--FGSQIWVGY 476 (842)
Q Consensus 408 ~v~~-------~g~~~~~~~~v~al~~s~dg~l~Sgs~DgtIrlWD~-~-g~~l~~l~~H~~~V~sls~--dG~~LasGs 476 (842)
|+|. -..|++|...|.+++|..|.++++||.|.+||+||+ + ...+.++.. .++++-++. .++.|+.--
T Consensus 339 RLWDFReaI~sV~VFQGHtdtVTS~vF~~dd~vVSgSDDrTvKvWdLrNMRsplATIRt-dS~~NRvavs~g~~iIAiPh 417 (481)
T KOG0300|consen 339 RLWDFREAIQSVAVFQGHTDTVTSVVFNTDDRVVSGSDDRTVKVWDLRNMRSPLATIRT-DSPANRVAVSKGHPIIAIPH 417 (481)
T ss_pred EeccchhhcceeeeecccccceeEEEEecCCceeecCCCceEEEeeeccccCcceeeec-CCccceeEeecCCceEEecc
Confidence 5554 235889999999999999999999999999999999 4 356777765 557776654 456888888
Q ss_pred cCcEEEEEeCCCcccc-----cccccccCEEEEEeCC----CEEEEEcCCCCeeeccccCCC
Q 003171 477 MNGIVQVLDLEGNLLG-----GWVAHSSPVIKMAVGA----GYIFTLANHGGIRGWNVTSPG 529 (842)
Q Consensus 477 ~DgtIrlWD~~g~~i~-----~l~gH~~~V~sla~dg----~~l~S~S~DgtIrvWd~~~~~ 529 (842)
..+.|||+|++|+.+. .-+||.-.|.|.++-. ..|++++-|..+--|++..|.
T Consensus 418 DNRqvRlfDlnG~RlaRlPrtsRqgHrRMV~c~AW~eehp~cnLftcGFDR~v~gW~in~p~ 479 (481)
T KOG0300|consen 418 DNRQVRLFDLNGNRLARLPRTSRQGHRRMVTCCAWLEEHPACNLFTCGFDRMVAGWKINTPT 479 (481)
T ss_pred CCceEEEEecCCCccccCCcccccccceeeeeeeccccCcccccccccccceeeeeEecccC
Confidence 8999999999986433 4569999999998632 358899999999999987654
|
|
| >KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.85 E-value=9.4e-21 Score=189.16 Aligned_cols=231 Identities=21% Similarity=0.297 Sum_probs=181.4
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCCC-EEEeeCCCcEEEEeC
Q 003171 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPW 269 (842)
Q Consensus 191 ~~~V~~la~dpdg~~LaSGs~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~ 269 (842)
.++|.....+.+..+.|||+.|-+.++||.-+| .++++| .|.-.|.+++|+.|.. |+||+.++.+||+|+
T Consensus 59 kgavw~~~l~~na~~aasaaadftakvw~a~tg--------delhsf-~hkhivk~~af~~ds~~lltgg~ekllrvfdl 129 (334)
T KOG0278|consen 59 KGAVWSATLNKNATRAASAAADFTAKVWDAVTG--------DELHSF-EHKHIVKAVAFSQDSNYLLTGGQEKLLRVFDL 129 (334)
T ss_pred CcceeeeecCchhhhhhhhcccchhhhhhhhhh--------hhhhhh-hhhheeeeEEecccchhhhccchHHHhhhhhc
Confidence 889999999988899999999999999999998 566665 5888999999999987 999999999999999
Q ss_pred CCccceeecCCCceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcCCCCEEEEeC-CCcEEEEEccCCcEEEEe
Q 003171 270 EAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVF 348 (842)
Q Consensus 270 ~t~~~~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s-~~tI~lWD~~tg~~l~~l 348 (842)
+..+.. +. .+++| +..|+-+...+.+..+.|++ +++||+||.+||..+++|
T Consensus 130 n~p~Ap----p~--------------E~~gh----------tg~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt~v~sL 181 (334)
T KOG0278|consen 130 NRPKAP----PK--------------EISGH----------TGGIRTVLWCHEDKCILSSADDKTVRLWDHRTGTEVQSL 181 (334)
T ss_pred cCCCCC----ch--------------hhcCC----------CCcceeEEEeccCceEEeeccCCceEEEEeccCcEEEEE
Confidence 653211 00 01122 34566666666666666655 589999999999887665
Q ss_pred ecCCceEeeeecccCCCcccccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEeecCccccCCCceEEEEEC
Q 003171 349 NIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTS 428 (842)
Q Consensus 349 ~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~al~~s 428 (842)
.-. ..|.++.++
T Consensus 182 ~~~--------------------------------------------------------------------s~VtSlEvs 193 (334)
T KOG0278|consen 182 EFN--------------------------------------------------------------------SPVTSLEVS 193 (334)
T ss_pred ecC--------------------------------------------------------------------CCCcceeec
Confidence 321 123456677
Q ss_pred CCCcEEEEeCCCeEEEEcC-CCCeeeeeecCCccEEE--EEecCCEEEEEecCcEEEEEeCC-Ccccccc-cccccCEEE
Q 003171 429 IDGMIWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQC--LCTFGSQIWVGYMNGIVQVLDLE-GNLLGGW-VAHSSPVIK 503 (842)
Q Consensus 429 ~dg~l~Sgs~DgtIrlWD~-~g~~l~~l~~H~~~V~s--ls~dG~~LasGs~DgtIrlWD~~-g~~i~~l-~gH~~~V~s 503 (842)
+||.+++-...++|++||. +-..++.+.- ...|.+ |.|....+++|+.|..++.+|.. |.-+..+ +||-++|.|
T Consensus 194 ~dG~ilTia~gssV~Fwdaksf~~lKs~k~-P~nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~nkgh~gpVhc 272 (334)
T KOG0278|consen 194 QDGRILTIAYGSSVKFWDAKSFGLLKSYKM-PCNVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSYNKGHFGPVHC 272 (334)
T ss_pred cCCCEEEEecCceeEEeccccccceeeccC-ccccccccccCCCceEEecCcceEEEEEeccCCceeeecccCCCCceEE
Confidence 8999888777788999999 5677777654 344554 45666789999999999999976 7777775 999999999
Q ss_pred EE--eCCCEEEEEcCCCCeeeccccC
Q 003171 504 MA--VGAGYIFTLANHGGIRGWNVTS 527 (842)
Q Consensus 504 la--~dg~~l~S~S~DgtIrvWd~~~ 527 (842)
|. +||...+|||.||+||+|....
T Consensus 273 VrFSPdGE~yAsGSEDGTirlWQt~~ 298 (334)
T KOG0278|consen 273 VRFSPDGELYASGSEDGTIRLWQTTP 298 (334)
T ss_pred EEECCCCceeeccCCCceEEEEEecC
Confidence 97 5889999999999999999654
|
|
| >KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.85 E-value=8.9e-20 Score=182.86 Aligned_cols=230 Identities=17% Similarity=0.201 Sum_probs=168.0
Q ss_pred CCCeEEEEEcCCC-CEEEEEeCCCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCCC--EEEeeCCCcEEEE
Q 003171 191 VSSVMCMVGDEAS-GVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD--LWSGSEGGGIKIW 267 (842)
Q Consensus 191 ~~~V~~la~dpdg-~~LaSGs~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~--L~SgS~DgtIrvW 267 (842)
...+..+++++.- ..+++++-||++|+||+.... ..++.|+.|...|.++-+.+-.+ ++++|+|+|||+|
T Consensus 60 ~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s-------~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW 132 (311)
T KOG0277|consen 60 EDGLFDVAWSENHENQVIAASGDGSLRLFDLTMPS-------KPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLW 132 (311)
T ss_pred ccceeEeeecCCCcceEEEEecCceEEEeccCCCC-------cchhHHHhhhhheEEeccccccceeEEeeccCCceEee
Confidence 4578899999854 688899999999999965543 67889999999999999988643 6788999999999
Q ss_pred eCCCccceeecCCCceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcC-CCCEEEEeC-CCcEEEEEccC-CcE
Q 003171 268 PWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDH-SRAKVWSAG-FLSFALWDART-REL 344 (842)
Q Consensus 268 d~~t~~~~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~-~~~~v~s~s-~~tI~lWD~~t-g~~ 344 (842)
+........++.. | .+-|...+.++ ....+++++ |+++++||++. |+.
T Consensus 133 ~~~r~~Sv~Tf~g-------------------h----------~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~ 183 (311)
T KOG0277|consen 133 DPNRPNSVQTFNG-------------------H----------NSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKF 183 (311)
T ss_pred cCCCCcceEeecC-------------------C----------ccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCce
Confidence 9865332222221 1 11122233333 344555554 67999999864 333
Q ss_pred EEEeecCCceEeeeecccCCCcccccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEeecCccccCCCceEE
Q 003171 345 LKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEA 424 (842)
Q Consensus 345 l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~a 424 (842)
+. +..|. ..+.+
T Consensus 184 ~~-i~ah~-------------------------------------------------------------------~Eil~ 195 (311)
T KOG0277|consen 184 MS-IEAHN-------------------------------------------------------------------SEILC 195 (311)
T ss_pred eE-EEecc-------------------------------------------------------------------ceeEe
Confidence 22 22111 11111
Q ss_pred EEEC--CCCcEEEEeCCCeEEEEcCC--CCeeeeeecCCccEEEEEec---CCEEEEEecCcEEEEEeCC-C-ccccccc
Q 003171 425 LTTS--IDGMIWTGGANGLLLQWDPN--GNRLQDFQYLPFAVQCLCTF---GSQIWVGYMNGIVQVLDLE-G-NLLGGWV 495 (842)
Q Consensus 425 l~~s--~dg~l~Sgs~DgtIrlWD~~--g~~l~~l~~H~~~V~sls~d---G~~LasGs~DgtIrlWD~~-g-~~i~~l~ 495 (842)
.-++ .+..+++|+.|+.||.||+. ...+.++.+|..+|..+.+. -..||+++.|-|+||||.+ + .++.+..
T Consensus 196 cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds~~e~~~ 275 (311)
T KOG0277|consen 196 CDWSKYNHNVLATGGVDNLVRGWDIRNLRTPLFELNGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQDSAIETVD 275 (311)
T ss_pred ecccccCCcEEEecCCCceEEEEehhhccccceeecCCceEEEEEecCcchhhHhhhccccceEEecccccchhhhhhhh
Confidence 1111 12348999999999999994 46788889999999999764 3589999999999999987 3 4688888
Q ss_pred ccccCEEEEE---eCCCEEEEEcCCCCeeecc
Q 003171 496 AHSSPVIKMA---VGAGYIFTLANHGGIRGWN 524 (842)
Q Consensus 496 gH~~~V~sla---~dg~~l~S~S~DgtIrvWd 524 (842)
-|+..|..+. .++.++++.+.|..+.||+
T Consensus 276 ~HtEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~ 307 (311)
T KOG0277|consen 276 HHTEFVCGLDWSLFDPGQVASTGWDELLYVWN 307 (311)
T ss_pred ccceEEeccccccccCceeeecccccceeeec
Confidence 9999999887 3789999999999999998
|
|
| >KOG0294 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.4e-19 Score=184.62 Aligned_cols=233 Identities=19% Similarity=0.227 Sum_probs=165.3
Q ss_pred eeeeeecCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCC---CEEEeeC
Q 003171 184 FKESVKGVSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYG---DLWSGSE 260 (842)
Q Consensus 184 ~~~~~~g~~~V~~la~dpdg~~LaSGs~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG---~L~SgS~ 260 (842)
|..+-| .++++|||++ +.++||||.|-+|+|+|+... .++..+..|.+.|+++.|.++- .|+||++
T Consensus 37 F~~~aH-~~sitavAVs--~~~~aSGssDetI~IYDm~k~--------~qlg~ll~HagsitaL~F~~~~S~shLlS~sd 105 (362)
T KOG0294|consen 37 FAFSAH-AGSITALAVS--GPYVASGSSDETIHIYDMRKR--------KQLGILLSHAGSITALKFYPPLSKSHLLSGSD 105 (362)
T ss_pred cccccc-ccceeEEEec--ceeEeccCCCCcEEEEeccch--------hhhcceeccccceEEEEecCCcchhheeeecC
Confidence 444455 8899999996 799999999999999999986 6777788999999999999876 4999999
Q ss_pred CCcEEEEeCCCccceeecCCCceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcCCCCEEEEeC-CCcEEEEEc
Q 003171 261 GGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDA 339 (842)
Q Consensus 261 DgtIrvWd~~t~~~~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s-~~tI~lWD~ 339 (842)
||.|-+|+...-+..-+ +++| ...|+.++..|.+....+.+ |+.+++||+
T Consensus 106 DG~i~iw~~~~W~~~~s-------------------lK~H----------~~~Vt~lsiHPS~KLALsVg~D~~lr~WNL 156 (362)
T KOG0294|consen 106 DGHIIIWRVGSWELLKS-------------------LKAH----------KGQVTDLSIHPSGKLALSVGGDQVLRTWNL 156 (362)
T ss_pred CCcEEEEEcCCeEEeee-------------------eccc----------ccccceeEecCCCceEEEEcCCceeeeehh
Confidence 99999999855321111 2233 44577788888777666654 789999999
Q ss_pred cCCcEEEEeecCCceEeeeecccCCCcccccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEee--cCc--c
Q 003171 340 RTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAA--KGG--F 415 (842)
Q Consensus 340 ~tg~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~--~g~--~ 415 (842)
-+|+.-.++...... . .+.|.+.+.+-.++..+.+-.+.. .-. .
T Consensus 157 V~Gr~a~v~~L~~~a-t-------------------------------~v~w~~~Gd~F~v~~~~~i~i~q~d~A~v~~~ 204 (362)
T KOG0294|consen 157 VRGRVAFVLNLKNKA-T-------------------------------LVSWSPQGDHFVVSGRNKIDIYQLDNASVFRE 204 (362)
T ss_pred hcCccceeeccCCcc-e-------------------------------eeEEcCCCCEEEEEeccEEEEEecccHhHhhh
Confidence 998764444321110 0 122222222223333332221111 001 1
Q ss_pred ccCCCceEEEEECCCCcEEEEeCCCeEEEEcC-CCCeeeeeecCCccEEEEEe----cCCEEEEEecCcEEEEEeCCC
Q 003171 416 GDDNRRTEALTTSIDGMIWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQCLCT----FGSQIWVGYMNGIVQVLDLEG 488 (842)
Q Consensus 416 ~~~~~~v~al~~s~dg~l~Sgs~DgtIrlWD~-~g~~l~~l~~H~~~V~sls~----dG~~LasGs~DgtIrlWD~~g 488 (842)
.....++.++.|...+.|++|..|+.|++||. .+.++..|.+|.++|.++.+ ++.+|+++|+||.|+|||++.
T Consensus 205 i~~~~r~l~~~~l~~~~L~vG~d~~~i~~~D~ds~~~~~~~~AH~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~~ 282 (362)
T KOG0294|consen 205 IENPKRILCATFLDGSELLVGGDNEWISLKDTDSDTPLTEFLAHENRVKDIASYTNPEHEYLVTASSDGFIKVWDIDM 282 (362)
T ss_pred hhccccceeeeecCCceEEEecCCceEEEeccCCCccceeeecchhheeeeEEEecCCceEEEEeccCceEEEEEccc
Confidence 12335566677777778999999999999999 58889999999999999863 467999999999999999863
|
|
| >KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.6e-20 Score=206.54 Aligned_cols=277 Identities=17% Similarity=0.275 Sum_probs=196.3
Q ss_pred EEEE-ecCCCEEEEeCCCCccccccccccccCCCCCCCCCCeeeeee-cCCCeEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 003171 144 QLWA-GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVK-GVSSVMCMVGDEASGVVWSGHRDGRIMCWKMN 221 (842)
Q Consensus 144 ~l~~-~~D~~vrvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~V~~la~dpdg~~LaSGs~DGtIrlWdl~ 221 (842)
-|+. |.|+.||+|+...-.. +...|+..++. |..+|..++.--+|+.|.|+|.|-+|++|+..
T Consensus 39 yLfTgGRDg~i~~W~~~~d~~---------------~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~ 103 (735)
T KOG0308|consen 39 YLFTGGRDGIIRLWSVTQDSN---------------EPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAH 103 (735)
T ss_pred eEEecCCCceEEEeccccccC---------------CcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecc
Confidence 3776 6699999999854321 11122111111 27789888888889999999999999999987
Q ss_pred CCccCCCCCcceeEEecccCCcEEEEEE-ecCCC-EEEeeCCCcEEEEeCCCccceeecCCCceeeeEEEEeeceeeccc
Q 003171 222 ARLLDSDDGFGEVLSWQAHRGPVLSLCI-SSYGD-LWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRS 299 (842)
Q Consensus 222 ~g~~~~~~~~~~~~~l~gH~~~V~slaf-s~dG~-L~SgS~DgtIrvWd~~t~~~~l~~~~~~~~~~~l~~~~s~~~l~~ 299 (842)
.+. .-+..++.-|++.|.||+. -++.. ++||+-|+.|.|||++++...+......
T Consensus 104 ~~~------~~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~----------------- 160 (735)
T KOG0308|consen 104 KDN------TFCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNN----------------- 160 (735)
T ss_pred cCc------chhHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccc-----------------
Confidence 751 1345667889999999999 55555 5799999999999998764322211110
Q ss_pred ceeccceeeeecCCEEEEEEcCCCCEEEEeC-CCcEEEEEccCCcEEEEeecCCceEeeeecccCCCcccccceEEEEEe
Q 003171 300 HLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVT 378 (842)
Q Consensus 300 ~~~~~~~~~~~s~~v~~las~~~~~~v~s~s-~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s 378 (842)
.++....+.+...+.+++..+.+..+++|+ .+-+++||.+|++.+-.|
T Consensus 161 -~t~~sl~sG~k~siYSLA~N~t~t~ivsGgtek~lr~wDprt~~kimkL------------------------------ 209 (735)
T KOG0308|consen 161 -VTVNSLGSGPKDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRTCKKIMKL------------------------------ 209 (735)
T ss_pred -cccccCCCCCccceeeeecCCcceEEEecCcccceEEeccccccceeee------------------------------
Confidence 111111112244577777777776777766 367999999887643222
Q ss_pred cCCCCccceeeeEeecCcceEEecCCcEEEEeecCccccCCCceEEEEECCCCc-EEEEeCCCeEEEEcC-CCCeeeeee
Q 003171 379 SSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGM-IWTGGANGLLLQWDP-NGNRLQDFQ 456 (842)
Q Consensus 379 ~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~al~~s~dg~-l~Sgs~DgtIrlWD~-~g~~l~~l~ 456 (842)
.+|...|.+|..++||+ ++|+|.||+||+||+ ..+|+.++.
T Consensus 210 -------------------------------------rGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~ 252 (735)
T KOG0308|consen 210 -------------------------------------RGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYI 252 (735)
T ss_pred -------------------------------------eccccceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeEE
Confidence 23445566778888987 999999999999999 689999999
Q ss_pred cCCccEEEEEec--CCEEEEEecCcEEEEEeCCC--cccccccccccCEEEEEe--CCCEEEEEcCCCCeeeccccC
Q 003171 457 YLPFAVQCLCTF--GSQIWVGYMNGIVQVLDLEG--NLLGGWVAHSSPVIKMAV--GAGYIFTLANHGGIRGWNVTS 527 (842)
Q Consensus 457 ~H~~~V~sls~d--G~~LasGs~DgtIrlWD~~g--~~i~~l~gH~~~V~sla~--dg~~l~S~S~DgtIrvWd~~~ 527 (842)
.|...|+++..+ =+++++|+.||.|..=|+.. ++...+ -...+|..+.. +.+.+..+.+|+.|+.|....
T Consensus 253 vH~e~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n~~~~tlic-k~daPv~~l~~~~~~~~~WvtTtds~I~rW~~~~ 328 (735)
T KOG0308|consen 253 VHKEGVWALQSSPSFTHVYSGGRDGNIYRTDLRNPAKSTLIC-KEDAPVLKLHLHEHDNSVWVTTTDSSIKRWKLEP 328 (735)
T ss_pred eccCceEEEeeCCCcceEEecCCCCcEEecccCCchhheEee-cCCCchhhhhhccccCCceeeeccccceecCCcc
Confidence 999999999654 46999999999999999874 222222 23345666553 355567888999999998543
|
|
| >PTZ00421 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=9.3e-19 Score=202.02 Aligned_cols=223 Identities=13% Similarity=0.159 Sum_probs=152.5
Q ss_pred CCCeEEEEEcC-CCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCC-C-EEEeeCCCcEEEE
Q 003171 191 VSSVMCMVGDE-ASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYG-D-LWSGSEGGGIKIW 267 (842)
Q Consensus 191 ~~~V~~la~dp-dg~~LaSGs~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG-~-L~SgS~DgtIrvW 267 (842)
.++|.+++|+| ++++|+||+.||+|++||+.++.. .......+..+.||...|.+|+|+|++ . |+||+.|++|+||
T Consensus 75 ~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~-~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIW 153 (493)
T PTZ00421 75 EGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGL-TQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVW 153 (493)
T ss_pred CCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCcc-ccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEE
Confidence 88999999999 889999999999999999976410 001113466789999999999999986 3 7899999999999
Q ss_pred eCCCccceeecCCCceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcCCCCEEEEeC-CCcEEEEEccCCcEEE
Q 003171 268 PWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLK 346 (842)
Q Consensus 268 d~~t~~~~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s-~~tI~lWD~~tg~~l~ 346 (842)
|+.++.....+ .+| ...+.+++.++++..+++++ |++|+|||+++++++.
T Consensus 154 Dl~tg~~~~~l-------------------~~h----------~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~ 204 (493)
T PTZ00421 154 DVERGKAVEVI-------------------KCH----------SDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVS 204 (493)
T ss_pred ECCCCeEEEEE-------------------cCC----------CCceEEEEEECCCCEEEEecCCCEEEEEECCCCcEEE
Confidence 99764322111 111 34577888888888888877 6799999999998877
Q ss_pred EeecCCceEeeeecccCCCcccccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEeecCccccCCCceEEEE
Q 003171 347 VFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALT 426 (842)
Q Consensus 347 ~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~al~ 426 (842)
.+..|.... +..+.
T Consensus 205 tl~~H~~~~------------------------------------------------------------------~~~~~ 218 (493)
T PTZ00421 205 SVEAHASAK------------------------------------------------------------------SQRCL 218 (493)
T ss_pred EEecCCCCc------------------------------------------------------------------ceEEE
Confidence 665443210 00011
Q ss_pred ECCC-CcEEEE----eCCCeEEEEcC-CC-CeeeeeecCCc-cEEEE--EecCCEEEEEec-CcEEEEEeCC-Ccccccc
Q 003171 427 TSID-GMIWTG----GANGLLLQWDP-NG-NRLQDFQYLPF-AVQCL--CTFGSQIWVGYM-NGIVQVLDLE-GNLLGGW 494 (842)
Q Consensus 427 ~s~d-g~l~Sg----s~DgtIrlWD~-~g-~~l~~l~~H~~-~V~sl--s~dG~~LasGs~-DgtIrlWD~~-g~~i~~l 494 (842)
+.++ +.++++ +.|++|++||+ +. +.+..+..+.. .+... .+++.+|++|+. |++|++||+. ++++..+
T Consensus 219 w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~~~~ 298 (493)
T PTZ00421 219 WAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERLTFCS 298 (493)
T ss_pred EcCCCCeEEEEecCCCCCCeEEEEeCCCCCCceeEeccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceEEEe
Confidence 2222 234433 35899999999 43 45555544433 33332 457889998875 9999999987 5655444
Q ss_pred cc-cccCEEEEEeCCC
Q 003171 495 VA-HSSPVIKMAVGAG 509 (842)
Q Consensus 495 ~g-H~~~V~sla~dg~ 509 (842)
.. +..++.++++-++
T Consensus 299 ~~~s~~~~~g~~~~pk 314 (493)
T PTZ00421 299 SYSSVEPHKGLCMMPK 314 (493)
T ss_pred eccCCCCCcceEeccc
Confidence 32 4455566654433
|
|
| >KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown] | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.2e-18 Score=182.61 Aligned_cols=295 Identities=14% Similarity=0.157 Sum_probs=197.2
Q ss_pred eEEEEecCC-EEEE--ecCCCEEEEeCCCCccccccccccccCCCCCCCCCCeeeeeecCCCeEEEEEcCCCCEEEEEeC
Q 003171 135 LRTIVCTEE-QLWA--GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGHR 211 (842)
Q Consensus 135 ~~~l~~~~~-~l~~--~~D~~vrvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~V~~la~dpdg~~LaSGs~ 211 (842)
+.+++.+.+ .|.+ |.|.--.||++.++... +.-..| ..+|.|+.|+.+|.+||||..
T Consensus 67 vFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~-------------------~eltgH-KDSVt~~~FshdgtlLATGdm 126 (399)
T KOG0296|consen 67 VFAVSLHPNNNLVATGGGDDLAFLWDISTGEFA-------------------GELTGH-KDSVTCCSFSHDGTLLATGDM 126 (399)
T ss_pred eEEEEeCCCCceEEecCCCceEEEEEccCCcce-------------------eEecCC-CCceEEEEEccCceEEEecCC
Confidence 334444423 3443 56889999999765422 112234 789999999999999999999
Q ss_pred CCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCCC-EEEeeCCCcEEEEeCCCccceeecCCCceeeeEEEE
Q 003171 212 DGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIV 290 (842)
Q Consensus 212 DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~~t~~~~l~~~~~~~~~~~l~~ 290 (842)
+|.|+||++.++ .....+.+--+.+-=|.++|-+. |+.|+.||.|-+|.+..+.....+.
T Consensus 127 sG~v~v~~~stg--------~~~~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~~kv~~----------- 187 (399)
T KOG0296|consen 127 SGKVLVFKVSTG--------GEQWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQALCKVMS----------- 187 (399)
T ss_pred CccEEEEEcccC--------ceEEEeecccCceEEEEecccccEEEeecCCCcEEEEECCCcceeeEec-----------
Confidence 999999999997 45555554556677789999888 6899999999999997642221111
Q ss_pred eeceeecccceeccceeeeecCCEEEEEEcCCCCEEEEeC-CCcEEEEEccCCcEEEEeecCCceEe-eeecccCCCccc
Q 003171 291 ERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVFNIDGQIEN-RVDMSLLPDFAM 368 (842)
Q Consensus 291 ~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s-~~tI~lWD~~tg~~l~~l~~~~~~~~-~~~~s~~~~~~~ 368 (842)
|| +.++.+=.+.++|.++.++. +++|++||.+||+++.......+.+- .+.+.......+
T Consensus 188 --------Gh----------~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~ 249 (399)
T KOG0296|consen 188 --------GH----------NSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLT 249 (399)
T ss_pred --------CC----------CCCcccccccCCCceEEEEecCceEEEEecCCCceeEEecccccCcCCccccccccceeE
Confidence 11 22233333456677787776 57999999999999888763322110 011111111000
Q ss_pred ------------ccceEEEEEecC-------CCCccceeeeEeec---CcceEEecCCcEEEEeecC-----ccccCCCc
Q 003171 369 ------------EDEFKTKIVTSS-------KKDKAQSSFGFFQR---SRNAIMGAADAVRRVAAKG-----GFGDDNRR 421 (842)
Q Consensus 369 ------------~~~~~~~~~s~~-------~~~~~~~s~~~~~~---~~~~~~g~~~~v~~v~~~g-----~~~~~~~~ 421 (842)
....|+...... ..+....++.+.+. -+.+..|.-+|...++... ....|...
T Consensus 250 ~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c~he~~ 329 (399)
T KOG0296|consen 250 KGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLRHICEHEDG 329 (399)
T ss_pred eccCCccEEEEccccceEEEecCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEecccchhheeccCCCc
Confidence 001111111110 00111112233222 2455677777776666522 12357778
Q ss_pred eEEEEECCCCcEEEEeCCCeEEEEcC-CCCeeeeeecCCccEEEEE--ecCCEEEEEecCcEEEEEeC
Q 003171 422 TEALTTSIDGMIWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQCLC--TFGSQIWVGYMNGIVQVLDL 486 (842)
Q Consensus 422 v~al~~s~dg~l~Sgs~DgtIrlWD~-~g~~l~~l~~H~~~V~sls--~dG~~LasGs~DgtIrlWD~ 486 (842)
|..+.|-++..|++++.||+|++||. +|+++.++.||...|++++ +++++++++|.|++.+|++.
T Consensus 330 V~~l~w~~t~~l~t~c~~g~v~~wDaRtG~l~~~y~GH~~~Il~f~ls~~~~~vvT~s~D~~a~VF~v 397 (399)
T KOG0296|consen 330 VTKLKWLNTDYLLTACANGKVRQWDARTGQLKFTYTGHQMGILDFALSPQKRLVVTVSDDNTALVFEV 397 (399)
T ss_pred eEEEEEcCcchheeeccCceEEeeeccccceEEEEecCchheeEEEEcCCCcEEEEecCCCeEEEEec
Confidence 99999988778999999999999999 8999999999999999875 68899999999999999985
|
|
| >KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.84 E-value=2.4e-19 Score=177.95 Aligned_cols=233 Identities=15% Similarity=0.230 Sum_probs=167.6
Q ss_pred ceeEEecccCCcEEEEEEecCCC-EEEeeCCCcEEEEeCCCccceeecCCCceeeeEEEEeeceeecccceeccceeeee
Q 003171 232 GEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSIL 310 (842)
Q Consensus 232 ~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~~t~~~~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~ 310 (842)
++...+..|+++|.++.|.-||+ .++++.|+|||+|+...+....++.. |
T Consensus 8 kr~~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktYsg-------------------h---------- 58 (307)
T KOG0316|consen 8 KRLSILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSG-------------------H---------- 58 (307)
T ss_pred hhceeecccccceEEEEEccCCCEEEEcCCCceEEeecccccceeeeecC-------------------C----------
Confidence 45667889999999999999998 67999999999999865443333222 1
Q ss_pred cCCEEEEEEcCCCCEEEEeC-CCcEEEEEccCCcEEEEeecCCceEeeeecccCCCcccccceEEEEEecCCCCccceee
Q 003171 311 TSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSF 389 (842)
Q Consensus 311 s~~v~~las~~~~~~v~s~s-~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~ 389 (842)
-.+|.-++.+.++.++++++ |+.+.+||+.||+.++.|.+|..-+|.+.+...
T Consensus 59 G~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~TGkv~Rr~rgH~aqVNtV~fNee-------------------------- 112 (307)
T KOG0316|consen 59 GHEVLDAALSSDNSKFASCGGDKAVQVWDVNTGKVDRRFRGHLAQVNTVRFNEE-------------------------- 112 (307)
T ss_pred CceeeeccccccccccccCCCCceEEEEEcccCeeeeecccccceeeEEEecCc--------------------------
Confidence 12455566666777777765 788999999999999999988765555444321
Q ss_pred eEeecCcceEEecCCcEEEEee-c-------CccccCCCceEEEEECCCCcEEEEeCCCeEEEEcC-CCCeeeeeecCCc
Q 003171 390 GFFQRSRNAIMGAADAVRRVAA-K-------GGFGDDNRRTEALTTSIDGMIWTGGANGLLLQWDP-NGNRLQDFQYLPF 460 (842)
Q Consensus 390 ~~~~~~~~~~~g~~~~v~~v~~-~-------g~~~~~~~~v~al~~s~dg~l~Sgs~DgtIrlWD~-~g~~l~~l~~H~~ 460 (842)
+..++.|+-+...|+|. . ..+.+....|.++.++ +-.|++||.||++|.+|+ .|+....+-+|
T Consensus 113 -----sSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~-~heIvaGS~DGtvRtydiR~G~l~sDy~g~-- 184 (307)
T KOG0316|consen 113 -----SSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVA-EHEIVAGSVDGTVRTYDIRKGTLSSDYFGH-- 184 (307)
T ss_pred -----ceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEec-ccEEEeeccCCcEEEEEeecceeehhhcCC--
Confidence 11222233232222222 0 0111222334444442 224889999999999999 78887777665
Q ss_pred cEEEEE--ecCCEEEEEecCcEEEEEeCC-CcccccccccccCEEEEE----eCCCEEEEEcCCCCeeeccccC
Q 003171 461 AVQCLC--TFGSQIWVGYMNGIVQVLDLE-GNLLGGWVAHSSPVIKMA----VGAGYIFTLANHGGIRGWNVTS 527 (842)
Q Consensus 461 ~V~sls--~dG~~LasGs~DgtIrlWD~~-g~~i~~l~gH~~~V~sla----~dg~~l~S~S~DgtIrvWd~~~ 527 (842)
+|+|++ .||+...+++.|++|+|.|-+ |++++..+||.+.=+.+. .....++|||.||.|.+||+..
T Consensus 185 pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYkGhkn~eykldc~l~qsdthV~sgSEDG~Vy~wdLvd 258 (307)
T KOG0316|consen 185 PITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYKGHKNMEYKLDCCLNQSDTHVFSGSEDGKVYFWDLVD 258 (307)
T ss_pred cceeEEecCCCCEEEEeeccceeeecccchhHHHHHhcccccceeeeeeeecccceeEEeccCCceEEEEEecc
Confidence 677765 589999999999999999987 999999999998877664 3567899999999999999754
|
|
| >KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.84 E-value=3.7e-20 Score=193.36 Aligned_cols=262 Identities=19% Similarity=0.295 Sum_probs=168.3
Q ss_pred CCeeeeeec-CCCeEEEEEcCCC-CEEEEEeCCCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCCCEEEee
Q 003171 182 APFKESVKG-VSSVMCMVGDEAS-GVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGDLWSGS 259 (842)
Q Consensus 182 ~~~~~~~~g-~~~V~~la~dpdg-~~LaSGs~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~L~SgS 259 (842)
.||...+.| ...|.|++-+|.. ..++||+.||.|++||+... .++.++++|.+.|..|+++. +.++|++
T Consensus 56 kPFv~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR--------~~~~~f~AH~G~V~Gi~v~~-~~~~tvg 126 (433)
T KOG0268|consen 56 KPFVGSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQR--------ECIRTFKAHEGLVRGICVTQ-TSFFTVG 126 (433)
T ss_pred ccchhhccccccccchhhcCcchhhhhhccccCceEEEEehhhh--------hhhheeecccCceeeEEecc-cceEEec
Confidence 456555554 7789999999977 78999999999999999986 67889999999999999998 6699999
Q ss_pred CCCcEEEEeCCCccceeecCCCce-----ee---eEEEEe---eceeecccceeccceeeee--cCCEEEEEEcCCC-CE
Q 003171 260 EGGGIKIWPWEAIEKALSLKPEER-----HT---AALIVE---RSYIDLRSHLSVNGFSSIL--TSDIKNLLSDHSR-AK 325 (842)
Q Consensus 260 ~DgtIrvWd~~t~~~~l~~~~~~~-----~~---~~l~~~---~s~~~l~~~~~~~~~~~~~--s~~v~~las~~~~-~~ 325 (842)
+|+|||.|..+.. ..-++..... +. ..+..- -++||.. ....+++.. ...+.++-+.+.. ..
T Consensus 127 dDKtvK~wk~~~~-p~~tilg~s~~~gIdh~~~~~~FaTcGe~i~IWD~~---R~~Pv~smswG~Dti~svkfNpvETsI 202 (433)
T KOG0268|consen 127 DDKTVKQWKIDGP-PLHTILGKSVYLGIDHHRKNSVFATCGEQIDIWDEQ---RDNPVSSMSWGADSISSVKFNPVETSI 202 (433)
T ss_pred CCcceeeeeccCC-cceeeeccccccccccccccccccccCceeeecccc---cCCccceeecCCCceeEEecCCCcchh
Confidence 9999999997541 1101100000 00 000000 0001100 000000000 1112233333321 12
Q ss_pred EEEe-CCCcEEEEEccCCcEEEEeecCCceEeeeecccCCCcccccceEEEEEecCCCCccceeeeEeecCcceEEecCC
Q 003171 326 VWSA-GFLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAAD 404 (842)
Q Consensus 326 v~s~-s~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~ 404 (842)
|+++ +|++|.|+|++++.+++.+.
T Consensus 203 Las~~sDrsIvLyD~R~~~Pl~KVi------------------------------------------------------- 227 (433)
T KOG0268|consen 203 LASCASDRSIVLYDLRQASPLKKVI------------------------------------------------------- 227 (433)
T ss_pred eeeeccCCceEEEecccCCccceee-------------------------------------------------------
Confidence 2222 23444444444443332210
Q ss_pred cEEEEeecCccccCCCceEEEEECCCCc-EEEEeCCCeEEEEcCC--CCeeeeeecCCccEEEEE--ecCCEEEEEecCc
Q 003171 405 AVRRVAAKGGFGDDNRRTEALTTSIDGM-IWTGGANGLLLQWDPN--GNRLQDFQYLPFAVQCLC--TFGSQIWVGYMNG 479 (842)
Q Consensus 405 ~v~~v~~~g~~~~~~~~v~al~~s~dg~-l~Sgs~DgtIrlWD~~--g~~l~~l~~H~~~V~sls--~dG~~LasGs~Dg 479 (842)
-.-+...++++|++- +.+|++|..+..+|+. ...++.+.+|.++|+++. |-|+-+++||.|.
T Consensus 228 -------------~~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsptG~EfvsgsyDk 294 (433)
T KOG0268|consen 228 -------------LTMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSPTGQEFVSGSYDK 294 (433)
T ss_pred -------------eeccccceecCccccceeeccccccceehhhhhhcccchhhcccceeEEEeccCCCcchhccccccc
Confidence 001223467778665 6789999999999993 478889999999999985 5699999999999
Q ss_pred EEEEEeCC-Ccccccccccc---cCEEEEEe--CCCEEEEEcCCCCeeecccc
Q 003171 480 IVQVLDLE-GNLLGGWVAHS---SPVIKMAV--GAGYIFTLANHGGIRGWNVT 526 (842)
Q Consensus 480 tIrlWD~~-g~~i~~l~gH~---~~V~sla~--dg~~l~S~S~DgtIrvWd~~ 526 (842)
+|||+.+. +....+ -|+ ..|.+|.+ |.++++|||.|+.||+|...
T Consensus 295 sIRIf~~~~~~SRdi--YhtkRMq~V~~Vk~S~Dskyi~SGSdd~nvRlWka~ 345 (433)
T KOG0268|consen 295 SIRIFPVNHGHSRDI--YHTKRMQHVFCVKYSMDSKYIISGSDDGNVRLWKAK 345 (433)
T ss_pred eEEEeecCCCcchhh--hhHhhhheeeEEEEeccccEEEecCCCcceeeeecc
Confidence 99999986 432111 122 24888874 89999999999999999854
|
|
| >KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.8e-18 Score=193.83 Aligned_cols=262 Identities=21% Similarity=0.259 Sum_probs=195.7
Q ss_pred CCEEEEecCCCEEEEeCCCCccccccccccccCCCCCCCCCCeeeeeecCCCeEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 003171 142 EEQLWAGGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGHRDGRIMCWKMN 221 (842)
Q Consensus 142 ~~~l~~~~D~~vrvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~V~~la~dpdg~~LaSGs~DGtIrlWdl~ 221 (842)
.+.|.++-...|.+|+..+..... . -..+ ...|+++.++++|+.|+.|..+|.|.|||..
T Consensus 188 ~n~laValg~~vylW~~~s~~v~~------------------l-~~~~-~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~ 247 (484)
T KOG0305|consen 188 ANVLAVALGQSVYLWSASSGSVTE------------------L-CSFG-EELVTSVKWSPDGSHLAVGTSDGTVQIWDVK 247 (484)
T ss_pred CCeEEEEecceEEEEecCCCceEE------------------e-EecC-CCceEEEEECCCCCEEEEeecCCeEEEEehh
Confidence 335555778899999986543110 0 0122 5689999999999999999999999999998
Q ss_pred CCccCCCCCcceeEEecc-cCCcEEEEEEecCCCEEEeeCCCcEEEEeCCCccceeecCCCceeeeEEEEeeceeecccc
Q 003171 222 ARLLDSDDGFGEVLSWQA-HRGPVLSLCISSYGDLWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSH 300 (842)
Q Consensus 222 ~g~~~~~~~~~~~~~l~g-H~~~V~slafs~dG~L~SgS~DgtIrvWd~~t~~~~l~~~~~~~~~~~l~~~~s~~~l~~~ 300 (842)
.. +.+..+.+ |...|.++++.. ..+.+|+.|+.|..+|+...+..... +++|
T Consensus 248 ~~--------k~~~~~~~~h~~rvg~laW~~-~~lssGsr~~~I~~~dvR~~~~~~~~------------------~~~H 300 (484)
T KOG0305|consen 248 EQ--------KKTRTLRGSHASRVGSLAWNS-SVLSSGSRDGKILNHDVRISQHVVST------------------LQGH 300 (484)
T ss_pred hc--------cccccccCCcCceeEEEeccC-ceEEEecCCCcEEEEEEecchhhhhh------------------hhcc
Confidence 85 66777888 999999999983 34779999999999999764432220 1112
Q ss_pred eeccceeeeecCCEEEEEEcCCCCEEEEeC-CCcEEEEEccCCcEEEEeecCCceEeeeecccCCCcccccceEEEEEec
Q 003171 301 LSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTS 379 (842)
Q Consensus 301 ~~~~~~~~~~s~~v~~las~~~~~~v~s~s-~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~ 379 (842)
...|.-+..++++..++|++ |..+.|||..+.+++..+.
T Consensus 301 ----------~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p~~~~~------------------------------ 340 (484)
T KOG0305|consen 301 ----------RQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEPKFTFT------------------------------ 340 (484)
T ss_pred ----------cceeeeeEECCCCCeeccCCCccceEeccCCCccccEEEe------------------------------
Confidence 33566677778888888887 6789999985444333332
Q ss_pred CCCCccceeeeEeecCcceEEecCCcEEEEeecCccccCCCceEEEEECC--CCcEEEEe--CCCeEEEEcC-CCCeeee
Q 003171 380 SKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSI--DGMIWTGG--ANGLLLQWDP-NGNRLQD 454 (842)
Q Consensus 380 ~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~al~~s~--dg~l~Sgs--~DgtIrlWD~-~g~~l~~ 454 (842)
+|...|.++++.| .|.||+|+ .|++|++||+ +|.+++.
T Consensus 341 -------------------------------------~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~ 383 (484)
T KOG0305|consen 341 -------------------------------------EHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDS 383 (484)
T ss_pred -------------------------------------ccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEecc
Confidence 3334455566666 35577765 6999999999 7888887
Q ss_pred eecCCccEEEEEec--CCEEEE--EecCcEEEEEeCC-CcccccccccccCEEEEE--eCCCEEEEEcCCCCeeeccccC
Q 003171 455 FQYLPFAVQCLCTF--GSQIWV--GYMNGIVQVLDLE-GNLLGGWVAHSSPVIKMA--VGAGYIFTLANHGGIRGWNVTS 527 (842)
Q Consensus 455 l~~H~~~V~sls~d--G~~Las--Gs~DgtIrlWD~~-g~~i~~l~gH~~~V~sla--~dg~~l~S~S~DgtIrvWd~~~ 527 (842)
... ...|.+|... .+-|++ |..+..|.||+.. -+.+..+.||+..|..++ +||+.+++|+.|.|+|+|++-.
T Consensus 384 vdt-gsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~~~l~gH~~RVl~la~SPdg~~i~t~a~DETlrfw~~f~ 462 (484)
T KOG0305|consen 384 VDT-GSQVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKLVAELLGHTSRVLYLALSPDGETIVTGAADETLRFWNLFD 462 (484)
T ss_pred ccc-CCceeeEEEcCCCCEEEEecCCCCCcEEEEeccccceeeeecCCcceeEEEEECCCCCEEEEecccCcEEeccccC
Confidence 754 5679998654 433443 5568899999976 578999999999999987 6999999999999999999866
Q ss_pred C
Q 003171 528 P 528 (842)
Q Consensus 528 ~ 528 (842)
.
T Consensus 463 ~ 463 (484)
T KOG0305|consen 463 E 463 (484)
T ss_pred C
Confidence 4
|
|
| >KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.3e-19 Score=181.09 Aligned_cols=238 Identities=17% Similarity=0.275 Sum_probs=181.4
Q ss_pred CCccccCceeEEEEecCCEEEE-------------ecCCCEEEEeCCCCccccccccccccCCCCCCCCCCeeeeeecCC
Q 003171 126 LRETQIGCFLRTIVCTEEQLWA-------------GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVS 192 (842)
Q Consensus 126 ~~~~~~~~~~~~l~~~~~~l~~-------------~~D~~vrvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 192 (842)
||.-.+|.++-+..++..-+|. +.|=+-+|||.-++...- .| ++ .-
T Consensus 43 lr~g~tgdwigtfeghkgavw~~~l~~na~~aasaaadftakvw~a~tgdelh-----------------sf-~h---kh 101 (334)
T KOG0278|consen 43 LRNGDTGDWIGTFEGHKGAVWSATLNKNATRAASAAADFTAKVWDAVTGDELH-----------------SF-EH---KH 101 (334)
T ss_pred hccCCCCCcEEeeeccCcceeeeecCchhhhhhhhcccchhhhhhhhhhhhhh-----------------hh-hh---hh
Confidence 7778888888888877777774 347789999976543221 12 22 34
Q ss_pred CeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCCC-EEEeeCCCcEEEEeCCC
Q 003171 193 SVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEA 271 (842)
Q Consensus 193 ~V~~la~dpdg~~LaSGs~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~~t 271 (842)
-|.+++|+.|...|.||+.+..+|++|++... .+...+.||++.|..+.|....+ ++|.+.|+|||+||..+
T Consensus 102 ivk~~af~~ds~~lltgg~ekllrvfdln~p~-------App~E~~ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD~rT 174 (334)
T KOG0278|consen 102 IVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPK-------APPKEISGHTGGIRTVLWCHEDKCILSSADDKTVRLWDHRT 174 (334)
T ss_pred eeeeEEecccchhhhccchHHHhhhhhccCCC-------CCchhhcCCCCcceeEEEeccCceEEeeccCCceEEEEecc
Confidence 79999999999999999999999999998763 45566889999999999987655 88889999999999988
Q ss_pred ccceeecCCCceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcCCCCEEEEeCCCcEEEEEccCCcEEEEeecC
Q 003171 272 IEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGFLSFALWDARTRELLKVFNID 351 (842)
Q Consensus 272 ~~~~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s~~tI~lWD~~tg~~l~~l~~~ 351 (842)
+....++.. ...++++-.+++|..|..+-..+|+.||+.+-.+++.+...
T Consensus 175 gt~v~sL~~------------------------------~s~VtSlEvs~dG~ilTia~gssV~Fwdaksf~~lKs~k~P 224 (334)
T KOG0278|consen 175 GTEVQSLEF------------------------------NSPVTSLEVSQDGRILTIAYGSSVKFWDAKSFGLLKSYKMP 224 (334)
T ss_pred CcEEEEEec------------------------------CCCCcceeeccCCCEEEEecCceeEEeccccccceeeccCc
Confidence 653322210 33566677777777777666679999999987777765432
Q ss_pred CceEeeeecccCCCcccccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEeecCccccCCCceEEEEECCCC
Q 003171 352 GQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDG 431 (842)
Q Consensus 352 ~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~al~~s~dg 431 (842)
-.+ ++....|+.
T Consensus 225 ~nV--------------------------------------------------------------------~SASL~P~k 236 (334)
T KOG0278|consen 225 CNV--------------------------------------------------------------------ESASLHPKK 236 (334)
T ss_pred ccc--------------------------------------------------------------------ccccccCCC
Confidence 211 111122333
Q ss_pred -cEEEEeCCCeEEEEcC-CCCeeeee-ecCCccEEEEE--ecCCEEEEEecCcEEEEEeCC-Cc
Q 003171 432 -MIWTGGANGLLLQWDP-NGNRLQDF-QYLPFAVQCLC--TFGSQIWVGYMNGIVQVLDLE-GN 489 (842)
Q Consensus 432 -~l~Sgs~DgtIrlWD~-~g~~l~~l-~~H~~~V~sls--~dG~~LasGs~DgtIrlWD~~-g~ 489 (842)
.++.|+.|..+..+|- +|+.+..+ ++|-++|.|+. |||..-++||.||+||||... ++
T Consensus 237 ~~fVaGged~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQt~~~~ 300 (334)
T KOG0278|consen 237 EFFVAGGEDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPDGELYASGSEDGTIRLWQTTPGK 300 (334)
T ss_pred ceEEecCcceEEEEEeccCCceeeecccCCCCceEEEEECCCCceeeccCCCceEEEEEecCCC
Confidence 3677889999999999 89888887 89999999984 689999999999999999976 44
|
|
| >KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.4e-17 Score=172.42 Aligned_cols=265 Identities=15% Similarity=0.201 Sum_probs=194.5
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCCC-EEEee--CCCcEEEE
Q 003171 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGS--EGGGIKIW 267 (842)
Q Consensus 191 ~~~V~~la~dpdg~~LaSGs~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS--~DgtIrvW 267 (842)
.+.|.++.|+++|..|++.+.|.+++++|...+ +...++.-+.-.|..+.|..... +.-+| .|.+||.-
T Consensus 14 ~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g--------~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIryL 85 (311)
T KOG1446|consen 14 NGKINSLDFSDDGLLLITSSEDDSLRLYDSLSG--------KQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIRYL 85 (311)
T ss_pred CCceeEEEecCCCCEEEEecCCCeEEEEEcCCC--------ceeeEeecccccccEEEEecCCceEEEccCCCCCceEEE
Confidence 568999999999999999999999999999998 66777766677888899987655 54444 59999999
Q ss_pred eCCCccceeecCCCceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcCCCCEEEEeC-CCcEEEEEccCCcEEE
Q 003171 268 PWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLK 346 (842)
Q Consensus 268 d~~t~~~~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s-~~tI~lWD~~tg~~l~ 346 (842)
++.+.+.. ++ +.|| ...|..+..+|.+..+.|++ |++|++||+++.+|..
T Consensus 86 sl~dNkyl-RY------------------F~GH----------~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg 136 (311)
T KOG1446|consen 86 SLHDNKYL-RY------------------FPGH----------KKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQG 136 (311)
T ss_pred EeecCceE-EE------------------cCCC----------CceEEEEEecCCCCeEEecccCCeEEeeEecCCCCce
Confidence 99765432 22 1233 44577788888888888888 7899999999888866
Q ss_pred EeecCCceEeeeecccCCCcccccceEEEEEecCCCCccceeeeEeecCcceEEecCC-cEEEEee----cCccc-----
Q 003171 347 VFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAAD-AVRRVAA----KGGFG----- 416 (842)
Q Consensus 347 ~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~-~v~~v~~----~g~~~----- 416 (842)
.+...+.... ++ .|.+...+++... .+...+. +|.|.
T Consensus 137 ~l~~~~~pi~--Af-------------------------------Dp~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~ 183 (311)
T KOG1446|consen 137 LLNLSGRPIA--AF-------------------------------DPEGLIFALANGSELIKLYDLRSFDKGPFTTFSIT 183 (311)
T ss_pred EEecCCCcce--eE-------------------------------CCCCcEEEEecCCCeEEEEEecccCCCCceeEccC
Confidence 5543222111 11 1111111111111 1111111 23222
Q ss_pred -cCCCceEEEEECCCCc-EEEEeCCCeEEEEcC-CCCeeeeeecCCccE----E-EEEecCCEEEEEecCcEEEEEeCC-
Q 003171 417 -DDNRRTEALTTSIDGM-IWTGGANGLLLQWDP-NGNRLQDFQYLPFAV----Q-CLCTFGSQIWVGYMNGIVQVLDLE- 487 (842)
Q Consensus 417 -~~~~~v~al~~s~dg~-l~Sgs~DgtIrlWD~-~g~~l~~l~~H~~~V----~-sls~dG~~LasGs~DgtIrlWD~~- 487 (842)
....+...+.|||||+ |+.++..+.+.+-|. +|..++++.+|.+.- . ++.|||++|.+|+.||+|.+|+++
T Consensus 184 ~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~ftPds~Fvl~gs~dg~i~vw~~~t 263 (311)
T KOG1446|consen 184 DNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLPLSATFTPDSKFVLSGSDDGTIHVWNLET 263 (311)
T ss_pred CCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCcceeEEECCCCcEEEEecCCCcEEEEEcCC
Confidence 2345667799999999 677777888999999 999999999877643 3 346899999999999999999998
Q ss_pred Ccccccccc-cccCEEEEEeCCCEEEEEcCCCCeeeccc
Q 003171 488 GNLLGGWVA-HSSPVIKMAVGAGYIFTLANHGGIRGWNV 525 (842)
Q Consensus 488 g~~i~~l~g-H~~~V~sla~dg~~l~S~S~DgtIrvWd~ 525 (842)
|+.+..+.+ |.+++.++.+.+++..=++.+..+-+|-.
T Consensus 264 g~~v~~~~~~~~~~~~~~~fnP~~~mf~sa~s~l~fw~p 302 (311)
T KOG1446|consen 264 GKKVAVLRGPNGGPVSCVRFNPRYAMFVSASSNLVFWLP 302 (311)
T ss_pred CcEeeEecCCCCCCccccccCCceeeeeecCceEEEEec
Confidence 888888888 78999999999998887888888999964
|
|
| >KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.81 E-value=5.4e-18 Score=171.18 Aligned_cols=268 Identities=17% Similarity=0.191 Sum_probs=187.7
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCCC-EEEeeCCCcEEEEeC
Q 003171 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPW 269 (842)
Q Consensus 191 ~~~V~~la~dpdg~~LaSGs~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~ 269 (842)
..|++-+.++-+|.+|+|+++|.++-+|-..+| +.+-++.||+++|+|+..+-+.+ |+|||.|.++||||+
T Consensus 10 ERplTqiKyN~eGDLlFscaKD~~~~vw~s~nG--------erlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv 81 (327)
T KOG0643|consen 10 ERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNG--------ERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDV 81 (327)
T ss_pred ccccceEEecCCCcEEEEecCCCCceEEEecCC--------ceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEc
Confidence 778999999999999999999999999998777 67889999999999999998887 899999999999999
Q ss_pred CCccceeecCCCceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcCCCCEEEEeCCC------cEEEEEccCCc
Q 003171 270 EAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGFL------SFALWDARTRE 343 (842)
Q Consensus 270 ~t~~~~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s~~------tI~lWD~~tg~ 343 (842)
++++....... ...|+.+-++.++..+..+.++ .|.++|++...
T Consensus 82 ~tGk~la~~k~------------------------------~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~ 131 (327)
T KOG0643|consen 82 ETGKQLATWKT------------------------------NSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDS 131 (327)
T ss_pred CCCcEEEEeec------------------------------CCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCCh
Confidence 98764432211 2245666666666665555442 46677775321
Q ss_pred EEEEeecCCceEeeeecccCCCcccccceEEEEEecCCCCccceeeeEe-ecCcceEEecCCcEEEEee--cC-cc----
Q 003171 344 LLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFF-QRSRNAIMGAADAVRRVAA--KG-GF---- 415 (842)
Q Consensus 344 ~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~-~~~~~~~~g~~~~v~~v~~--~g-~~---- 415 (842)
. +. ..++.-.++... +... +...| +.+..++.|+.+|-...+. .| .+
T Consensus 132 ~--------~~-------------~s~ep~~kI~t~---~ski-t~a~Wg~l~~~ii~Ghe~G~is~~da~~g~~~v~s~ 186 (327)
T KOG0643|consen 132 S--------DI-------------DSEEPYLKIPTP---DSKI-TSALWGPLGETIIAGHEDGSISIYDARTGKELVDSD 186 (327)
T ss_pred h--------hh-------------cccCceEEecCC---ccce-eeeeecccCCEEEEecCCCcEEEEEcccCceeeech
Confidence 1 00 000000011111 0111 11222 2345667888887555543 22 12
Q ss_pred ccCCCceEEEEECCCCc-EEEEeCCCeEEEEcC-CCCeeeeeecCCccEEEEE--ecCCEEEEEecCcEEEEEeCC----
Q 003171 416 GDDNRRTEALTTSIDGM-IWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQCLC--TFGSQIWVGYMNGIVQVLDLE---- 487 (842)
Q Consensus 416 ~~~~~~v~al~~s~dg~-l~Sgs~DgtIrlWD~-~g~~l~~l~~H~~~V~sls--~dG~~LasGs~DgtIrlWD~~---- 487 (842)
..|...|..+.+++|.. .++||.|.+-++||. +-++++++.. ..+|++.+ |.-.+++.|+- ..--|++
T Consensus 187 ~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty~t-e~PvN~aaisP~~d~VilgGG---qeA~dVTTT~~ 262 (327)
T KOG0643|consen 187 EEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKTYTT-ERPVNTAAISPLLDHVILGGG---QEAMDVTTTST 262 (327)
T ss_pred hhhccccccccccCCcceEEecccCccceeeeccceeeEEEeee-cccccceecccccceEEecCC---ceeeeeeeecc
Confidence 34778899999999998 799999999999999 6799999975 56888765 44456665542 2222321
Q ss_pred --Cc------------ccccccccccCEEEEE--eCCCEEEEEcCCCCeeeccc
Q 003171 488 --GN------------LLGGWVAHSSPVIKMA--VGAGYIFTLANHGGIRGWNV 525 (842)
Q Consensus 488 --g~------------~i~~l~gH~~~V~sla--~dg~~l~S~S~DgtIrvWd~ 525 (842)
|+ .+...+||=++|++|+ |+|+..+||+.||.||+--+
T Consensus 263 r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhPdGksYsSGGEDG~VR~h~F 316 (327)
T KOG0643|consen 263 RAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHPDGKSYSSGGEDGYVRLHHF 316 (327)
T ss_pred cccchhhhHHHHHHHHHhccccccccCcceeEECCCCcccccCCCCceEEEEEe
Confidence 32 3677889999999998 58899999999999998654
|
|
| >KOG0641 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.81 E-value=6.4e-17 Score=159.47 Aligned_cols=294 Identities=20% Similarity=0.283 Sum_probs=203.1
Q ss_pred CCccccCceeEEEEecCC-EEEE-ec-CCCEEEEeCCCCccccccccccccCCCCCCCC-CC----eeeeeecCCCeEEE
Q 003171 126 LRETQIGCFLRTIVCTEE-QLWA-GG-ENGLRVWNLKELYDESESDSVSVSKSKGEDGT-AP----FKESVKGVSSVMCM 197 (842)
Q Consensus 126 ~~~~~~~~~~~~l~~~~~-~l~~-~~-D~~vrvWdl~~~~~~~~~~~~~~~~~~~~~~~-~~----~~~~~~g~~~V~~l 197 (842)
|-++| -+|+++++.. .||+ |+ ..++||.-..... ..|++.+.. .| ++...|+.++|+|.
T Consensus 29 l~dsq---airav~fhp~g~lyavgsnskt~ric~yp~l~----------~~r~~hea~~~pp~v~~kr~khhkgsiyc~ 95 (350)
T KOG0641|consen 29 LEDSQ---AIRAVAFHPAGGLYAVGSNSKTFRICAYPALI----------DLRHAHEAAKQPPSVLCKRNKHHKGSIYCT 95 (350)
T ss_pred ecchh---heeeEEecCCCceEEeccCCceEEEEcccccc----------CcccccccccCCCeEEeeeccccCccEEEE
Confidence 44455 6888888854 8887 44 5689987543211 123333322 11 33333448899999
Q ss_pred EEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecC----CC-EEEee-CCCcEEEEeCCC
Q 003171 198 VGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSY----GD-LWSGS-EGGGIKIWPWEA 271 (842)
Q Consensus 198 a~dpdg~~LaSGs~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~d----G~-L~SgS-~DgtIrvWd~~t 271 (842)
+++|+|++|++||.|.+|++-..+...| +....-+.|.-|.+.|..++|-.+ |. |+|++ .|..|.+=|..+
T Consensus 96 ~ws~~geliatgsndk~ik~l~fn~dt~---~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~ 172 (350)
T KOG0641|consen 96 AWSPCGELIATGSNDKTIKVLPFNADTC---NATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGR 172 (350)
T ss_pred EecCccCeEEecCCCceEEEEecccccc---cccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCC
Confidence 9999999999999999999887665321 222233556779999999999755 23 56654 466666666654
Q ss_pred ccceeecCCCceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcCCCCEEEEeC-CCcEEEEEccCCcEEEEeec
Q 003171 272 IEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVFNI 350 (842)
Q Consensus 272 ~~~~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s-~~tI~lWD~~tg~~l~~l~~ 350 (842)
++.-..+.. | ++.+..+.+- ++..+++++ |+||+.||++-..++.++.-
T Consensus 173 g~~~~a~sg-------------------h----------tghilalysw-n~~m~~sgsqdktirfwdlrv~~~v~~l~~ 222 (350)
T KOG0641|consen 173 GQGFHALSG-------------------H----------TGHILALYSW-NGAMFASGSQDKTIRFWDLRVNSCVNTLDN 222 (350)
T ss_pred CCcceeecC-------------------C----------cccEEEEEEe-cCcEEEccCCCceEEEEeeeccceeeeccC
Confidence 432222221 1 3345555554 466777777 78999999987777655421
Q ss_pred CCceEeeeecccCCCcccccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEeecCccccCCCceEEEEECCC
Q 003171 351 DGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSID 430 (842)
Q Consensus 351 ~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~al~~s~d 430 (842)
+- ++ |.+ ....|.+++..|.
T Consensus 223 ~~-----------------------------~~-----------------------------~gl--essavaav~vdps 242 (350)
T KOG0641|consen 223 DF-----------------------------HD-----------------------------GGL--ESSAVAAVAVDPS 242 (350)
T ss_pred cc-----------------------------cC-----------------------------CCc--ccceeEEEEECCC
Confidence 00 00 000 1234678889999
Q ss_pred Cc-EEEEeCCCeEEEEcCC-CCeeeeeecCCccEEEEEec--CCEEEEEecCcEEEEEeCCCcc-----cccccccccCE
Q 003171 431 GM-IWTGGANGLLLQWDPN-GNRLQDFQYLPFAVQCLCTF--GSQIWVGYMNGIVQVLDLEGNL-----LGGWVAHSSPV 501 (842)
Q Consensus 431 g~-l~Sgs~DgtIrlWD~~-g~~l~~l~~H~~~V~sls~d--G~~LasGs~DgtIrlWD~~g~~-----i~~l~gH~~~V 501 (842)
|+ |++|..|....++|+. |+.++.|..|+..|.|+.+. ..|+.+++.|..|+|=|+.|.+ +.+...|.+.+
T Consensus 243 grll~sg~~dssc~lydirg~r~iq~f~phsadir~vrfsp~a~yllt~syd~~ikltdlqgdla~el~~~vv~ehkdk~ 322 (350)
T KOG0641|consen 243 GRLLASGHADSSCMLYDIRGGRMIQRFHPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDLAHELPIMVVAEHKDKA 322 (350)
T ss_pred cceeeeccCCCceEEEEeeCCceeeeeCCCccceeEEEeCCCceEEEEecccceEEEeecccchhhcCceEEEEeccCce
Confidence 98 6899999999999995 67899999999999999765 3499999999999999998754 44556788888
Q ss_pred EEEEeCCC--EEEEEcCCCCeeeccc
Q 003171 502 IKMAVGAG--YIFTLANHGGIRGWNV 525 (842)
Q Consensus 502 ~sla~dg~--~l~S~S~DgtIrvWd~ 525 (842)
..+.+.++ .++|.|.|+++.+|-+
T Consensus 323 i~~rwh~~d~sfisssadkt~tlwa~ 348 (350)
T KOG0641|consen 323 IQCRWHPQDFSFISSSADKTATLWAL 348 (350)
T ss_pred EEEEecCccceeeeccCcceEEEecc
Confidence 88877655 4779999999999974
|
|
| >KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.9e-18 Score=187.05 Aligned_cols=226 Identities=20% Similarity=0.263 Sum_probs=171.8
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCCC--EEEeeCCCcEEEEeC
Q 003171 192 SSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD--LWSGSEGGGIKIWPW 269 (842)
Q Consensus 192 ~~V~~la~dpdg~~LaSGs~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~--L~SgS~DgtIrvWd~ 269 (842)
..|+++.|-.||++++.|..-|.|+++|+.+. ..++++++|+.+|..+-|+|.+. |++||+|+.+|+||+
T Consensus 69 ~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r--------~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~ 140 (487)
T KOG0310|consen 69 DVVYSVDFRSDGRLLAAGDESGHVKVFDMKSR--------VILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDL 140 (487)
T ss_pred cceeEEEeecCCeEEEccCCcCcEEEeccccH--------HHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEc
Confidence 46888899889999999999999999997663 45677899999999999999876 679999999999999
Q ss_pred CCccceeecCCCceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcCCCC-EEEEeC-CCcEEEEEccCC-cEEE
Q 003171 270 EAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRA-KVWSAG-FLSFALWDARTR-ELLK 346 (842)
Q Consensus 270 ~t~~~~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~-~v~s~s-~~tI~lWD~~tg-~~l~ 346 (842)
.+..-+.. +.+| ...|++.+..+... .|++|+ |++|++||+++. ..+.
T Consensus 141 s~a~v~~~-------------------l~~h----------tDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~ 191 (487)
T KOG0310|consen 141 STAYVQAE-------------------LSGH----------TDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVV 191 (487)
T ss_pred CCcEEEEE-------------------ecCC----------cceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeE
Confidence 76432111 2223 55688888777544 788888 578999998764 2222
Q ss_pred EeecCCceEeeeecccCCCcccccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEeecCccccCCCceEEEE
Q 003171 347 VFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALT 426 (842)
Q Consensus 347 ~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~al~ 426 (842)
.| .|...|+.+.
T Consensus 192 el--------------------------------------------------------------------nhg~pVe~vl 203 (487)
T KOG0310|consen 192 EL--------------------------------------------------------------------NHGCPVESVL 203 (487)
T ss_pred Ee--------------------------------------------------------------------cCCCceeeEE
Confidence 22 1333455556
Q ss_pred ECCCCc-EEEEeCCCeEEEEcC-CCC-eeeeeecCCccEEEEEe--cCCEEEEEecCcEEEEEeCC-CcccccccccccC
Q 003171 427 TSIDGM-IWTGGANGLLLQWDP-NGN-RLQDFQYLPFAVQCLCT--FGSQIWVGYMNGIVQVLDLE-GNLLGGWVAHSSP 500 (842)
Q Consensus 427 ~s~dg~-l~Sgs~DgtIrlWD~-~g~-~l~~l~~H~~~V~sls~--dG~~LasGs~DgtIrlWD~~-g~~i~~l~gH~~~ 500 (842)
+-|.|. +++++.+ .||+||+ +|. .+..+..|...|+|+.. ++++|+||+.|+.|+++|++ -+.+..|+- .++
T Consensus 204 ~lpsgs~iasAgGn-~vkVWDl~~G~qll~~~~~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~Kvv~s~~~-~~p 281 (487)
T KOG0310|consen 204 ALPSGSLIASAGGN-SVKVWDLTTGGQLLTSMFNHNKTVTCLRLASDSTRLLSGSLDRHVKVFDTTNYKVVHSWKY-PGP 281 (487)
T ss_pred EcCCCCEEEEcCCC-eEEEEEecCCceehhhhhcccceEEEEEeecCCceEeecccccceEEEEccceEEEEeeec-ccc
Confidence 656655 6777755 5999999 464 44555559999999965 67999999999999999965 467777754 578
Q ss_pred EEEEE--eCCCEEEEEcCCCCeeecc
Q 003171 501 VIKMA--VGAGYIFTLANHGGIRGWN 524 (842)
Q Consensus 501 V~sla--~dg~~l~S~S~DgtIrvWd 524 (842)
|.+++ +|++.++-|-.||.+-+=+
T Consensus 282 vLsiavs~dd~t~viGmsnGlv~~rr 307 (487)
T KOG0310|consen 282 VLSIAVSPDDQTVVIGMSNGLVSIRR 307 (487)
T ss_pred eeeEEecCCCceEEEecccceeeeeh
Confidence 88876 5778999999999876543
|
|
| >KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.1e-18 Score=175.15 Aligned_cols=245 Identities=20% Similarity=0.233 Sum_probs=167.3
Q ss_pred eee-cCCCCCcccc---CceeEEEEe---cCCEEEE-ecCCCEEEEeCCCCccccccccccccCCCCCCCCCCeeeeeec
Q 003171 119 LEV-KPHPLRETQI---GCFLRTIVC---TEEQLWA-GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKG 190 (842)
Q Consensus 119 ~~~-~~~~~~~~~~---~~~~~~l~~---~~~~l~~-~~D~~vrvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 190 (842)
+|+ +|..++|.+. ...+..++= .++++++ +.||++|+||+.... .+...|+++
T Consensus 43 le~~~~~gi~e~~s~d~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s----------------~Pi~~~kEH--- 103 (311)
T KOG0277|consen 43 LEVTDPKGIQECQSYDTEDGLFDVAWSENHENQVIAASGDGSLRLFDLTMPS----------------KPIHKFKEH--- 103 (311)
T ss_pred EecCCCCCeEEEEeeecccceeEeeecCCCcceEEEEecCceEEEeccCCCC----------------cchhHHHhh---
Confidence 455 4556666432 334444442 2557776 679999999964321 122235552
Q ss_pred CCCeEEEEEcC-CCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCC-C-EEEeeCCCcEEEE
Q 003171 191 VSSVMCMVGDE-ASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYG-D-LWSGSEGGGIKIW 267 (842)
Q Consensus 191 ~~~V~~la~dp-dg~~LaSGs~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG-~-L~SgS~DgtIrvW 267 (842)
...|.++.+++ +++.+.++|.|||||+|+..-+ +-++++.||..-|...+|+|-- . ++|+|.|+++|+|
T Consensus 104 ~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~--------~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lw 175 (311)
T KOG0277|consen 104 KREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRP--------NSVQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLW 175 (311)
T ss_pred hhheEEeccccccceeEEeeccCCceEeecCCCC--------cceEeecCCccEEEEEecCCCCCCeEEEccCCceEEEE
Confidence 66899999887 4567888899999999999876 6788999999999999999963 4 6799999999999
Q ss_pred eCCCccceeecCCCceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcC-CCCEEEEeC-CCcEEEEEccCCc-E
Q 003171 268 PWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDH-SRAKVWSAG-FLSFALWDARTRE-L 344 (842)
Q Consensus 268 d~~t~~~~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~-~~~~v~s~s-~~tI~lWD~~tg~-~ 344 (842)
|+....+.+.+.. | ..++.+.--+. +...|++++ |+.|+.||++.-+ +
T Consensus 176 dvr~~gk~~~i~a-------------------h----------~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~p 226 (311)
T KOG0277|consen 176 DVRSPGKFMSIEA-------------------H----------NSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTP 226 (311)
T ss_pred EecCCCceeEEEe-------------------c----------cceeEeecccccCCcEEEecCCCceEEEEehhhcccc
Confidence 9865322222111 1 22233322222 344566655 6899999987522 1
Q ss_pred EEEeecCCceEeeeecccCCCcccccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEeecCccccCCCceEE
Q 003171 345 LKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEA 424 (842)
Q Consensus 345 l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~a 424 (842)
+..+ .| |.-.|+.
T Consensus 227 l~eL---------------------------------------------------~g----------------h~~AVRk 239 (311)
T KOG0277|consen 227 LFEL---------------------------------------------------NG----------------HGLAVRK 239 (311)
T ss_pred ceee---------------------------------------------------cC----------------CceEEEE
Confidence 1111 12 2223344
Q ss_pred EEECCCC--cEEEEeCCCeEEEEcCC-C-CeeeeeecCCccEEEEE---ecCCEEEEEecCcEEEEEeC
Q 003171 425 LTTSIDG--MIWTGGANGLLLQWDPN-G-NRLQDFQYLPFAVQCLC---TFGSQIWVGYMNGIVQVLDL 486 (842)
Q Consensus 425 l~~s~dg--~l~Sgs~DgtIrlWD~~-g-~~l~~l~~H~~~V~sls---~dG~~LasGs~DgtIrlWD~ 486 (842)
+.+||-- .|+|++-|-|+|+||.. + .++.+...|+.-|..+. .++.++|+.+-|+.+.||+.
T Consensus 240 vk~Sph~~~lLaSasYDmT~riw~~~~~ds~~e~~~~HtEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 240 VKFSPHHASLLASASYDMTVRIWDPERQDSAIETVDHHTEFVCGLDWSLFDPGQVASTGWDELLYVWNP 308 (311)
T ss_pred EecCcchhhHhhhccccceEEecccccchhhhhhhhccceEEeccccccccCceeeecccccceeeecc
Confidence 5566643 38999999999999994 4 57788888999888773 26889999999999999985
|
|
| >KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.5e-18 Score=186.50 Aligned_cols=239 Identities=20% Similarity=0.281 Sum_probs=173.7
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccC------------CCCCcceeEEecccCCcEEEEEEecCCC-EEE
Q 003171 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLD------------SDDGFGEVLSWQAHRGPVLSLCISSYGD-LWS 257 (842)
Q Consensus 191 ~~~V~~la~dpdg~~LaSGs~DGtIrlWdl~~g~~~------------~~~~~~~~~~l~gH~~~V~slafs~dG~-L~S 257 (842)
.-+|.||+++|+++++++++.||+|--|++.+|... ....++. ..++|...|.+++.|+||+ |+|
T Consensus 142 ~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~--~r~~h~keil~~avS~Dgkylat 219 (479)
T KOG0299|consen 142 QLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKE--SRKGHVKEILTLAVSSDGKYLAT 219 (479)
T ss_pred cCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCc--ccccccceeEEEEEcCCCcEEEe
Confidence 668999999999999999999999999999887411 0011111 1148999999999999999 899
Q ss_pred eeCCCcEEEEeCCCccceeecCCCceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcCCCCEEEEeC-CCcEEE
Q 003171 258 GSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFAL 336 (842)
Q Consensus 258 gS~DgtIrvWd~~t~~~~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s-~~tI~l 336 (842)
|+.|..|-||+.++.+....+. +| ...|..|++-.+...+++++ |.++++
T Consensus 220 gg~d~~v~Iw~~~t~ehv~~~~-------------------gh----------r~~V~~L~fr~gt~~lys~s~Drsvkv 270 (479)
T KOG0299|consen 220 GGRDRHVQIWDCDTLEHVKVFK-------------------GH----------RGAVSSLAFRKGTSELYSASADRSVKV 270 (479)
T ss_pred cCCCceEEEecCcccchhhccc-------------------cc----------ccceeeeeeecCccceeeeecCCceEE
Confidence 9999999999998865432222 22 34566777766666666665 789999
Q ss_pred EEccCCcEEEEeecCCceEeeeecccCCCcccccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEeecCccc
Q 003171 337 WDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFG 416 (842)
Q Consensus 337 WD~~tg~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~ 416 (842)
|++..-..+.+|-+|. +
T Consensus 271 w~~~~~s~vetlyGHq---------------------------------------------------d------------ 287 (479)
T KOG0299|consen 271 WSIDQLSYVETLYGHQ---------------------------------------------------D------------ 287 (479)
T ss_pred EehhHhHHHHHHhCCc---------------------------------------------------c------------
Confidence 9987555444443332 2
Q ss_pred cCCCceEEEEECCCCcEEE-EeCCCeEEEEcCCCCeeeeeecCCccEEEEEe-cCCEEEEEecCcEEEEEeCC-Cccccc
Q 003171 417 DDNRRTEALTTSIDGMIWT-GGANGLLLQWDPNGNRLQDFQYLPFAVQCLCT-FGSQIWVGYMNGIVQVLDLE-GNLLGG 493 (842)
Q Consensus 417 ~~~~~v~al~~s~dg~l~S-gs~DgtIrlWD~~g~~l~~l~~H~~~V~sls~-dG~~LasGs~DgtIrlWD~~-g~~i~~ 493 (842)
.|.++....-+++++ |+.|+|+++|++.-+..-+|.+|.+.+.|+++ +..++++||.+|.|.||++. -+++.+
T Consensus 288 ----~v~~IdaL~reR~vtVGgrDrT~rlwKi~eesqlifrg~~~sidcv~~In~~HfvsGSdnG~IaLWs~~KKkplf~ 363 (479)
T KOG0299|consen 288 ----GVLGIDALSRERCVTVGGRDRTVRLWKIPEESQLIFRGGEGSIDCVAFINDEHFVSGSDNGSIALWSLLKKKPLFT 363 (479)
T ss_pred ----ceeeechhcccceEEeccccceeEEEeccccceeeeeCCCCCeeeEEEecccceeeccCCceEEEeeecccCceeE
Confidence 222222223345555 44899999999965555578899999999987 67799999999999999975 333222
Q ss_pred c-cc-----------cccCEEEEE--eCCCEEEEEcCCCCeeeccccC
Q 003171 494 W-VA-----------HSSPVIKMA--VGAGYIFTLANHGGIRGWNVTS 527 (842)
Q Consensus 494 l-~g-----------H~~~V~sla--~dg~~l~S~S~DgtIrvWd~~~ 527 (842)
. .+ |..+|++|+ +....++|||.+|.||+|.+..
T Consensus 364 ~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~ 411 (479)
T KOG0299|consen 364 SRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIED 411 (479)
T ss_pred eeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecC
Confidence 1 12 223899988 4667899999999999998654
|
|
| >KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription] | Back alignment and domain information |
|---|
Probab=99.80 E-value=2.8e-18 Score=201.01 Aligned_cols=304 Identities=19% Similarity=0.217 Sum_probs=212.9
Q ss_pred CCCeEEEEEcCCCCEEEEEe--CCCcEEEEECCCCcc----CCCCCcceeEEecccCCcEEEEEEecCCC-EEEeeCCCc
Q 003171 191 VSSVMCMVGDEASGVVWSGH--RDGRIMCWKMNARLL----DSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGG 263 (842)
Q Consensus 191 ~~~V~~la~dpdg~~LaSGs--~DGtIrlWdl~~g~~----~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~Dgt 263 (842)
...|.++.++|+|..++||+ .||.+++|+.+.-.. ...+.-+++.+..-|.+.|+|+.|||||+ |++||+|+.
T Consensus 13 ~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD~~ 92 (942)
T KOG0973|consen 13 EKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGSDDRL 92 (942)
T ss_pred CeeEEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEeeccCcce
Confidence 56799999999999999999 999999999764210 00111233456678999999999999998 899999999
Q ss_pred EEEEeCCCc-cceeecC-CCceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcCCCCEEEEeC-CCcEEEEEcc
Q 003171 264 IKIWPWEAI-EKALSLK-PEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDAR 340 (842)
Q Consensus 264 IrvWd~~t~-~~~l~~~-~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s-~~tI~lWD~~ 340 (842)
|-||..... ....-.. ......+.. +....+++| .++|.-+.-++++..+++++ |.+|.|||.+
T Consensus 93 v~iW~~~~~~~~~~fgs~g~~~~vE~w---k~~~~l~~H----------~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~ 159 (942)
T KOG0973|consen 93 VMIWERAEIGSGTVFGSTGGAKNVESW---KVVSILRGH----------DSDVLDVNWSPDDSLLVSVSLDNSVIIWNAK 159 (942)
T ss_pred EEEeeecccCCccccccccccccccee---eEEEEEecC----------CCccceeccCCCccEEEEecccceEEEEccc
Confidence 999998631 0000000 111111100 111233444 67888888888888999988 7899999999
Q ss_pred CCcEEEEeecCCceEeeeecccCCCcccccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEeecCccccCCC
Q 003171 341 TRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNR 420 (842)
Q Consensus 341 tg~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~ 420 (842)
|.++++++.+|..
T Consensus 160 tF~~~~vl~~H~s------------------------------------------------------------------- 172 (942)
T KOG0973|consen 160 TFELLKVLRGHQS------------------------------------------------------------------- 172 (942)
T ss_pred cceeeeeeecccc-------------------------------------------------------------------
Confidence 9988877765432
Q ss_pred ceEEEEECCCCc-EEEEeCCCeEEEEcC-CCCeeeeeecCCcc------EE--EEEecCCEEEEEec----CcEEEEEeC
Q 003171 421 RTEALTTSIDGM-IWTGGANGLLLQWDP-NGNRLQDFQYLPFA------VQ--CLCTFGSQIWVGYM----NGIVQVLDL 486 (842)
Q Consensus 421 ~v~al~~s~dg~-l~Sgs~DgtIrlWD~-~g~~l~~l~~H~~~------V~--sls~dG~~LasGs~----DgtIrlWD~ 486 (842)
.|-.+.|+|-|+ ++|-+.|++|++|++ +-.+.+.++.+-.. .+ +.+|||++|++.-. -.++.|.+.
T Consensus 173 ~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR 252 (942)
T KOG0973|consen 173 LVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIER 252 (942)
T ss_pred cccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchhhccCCcceeEEEec
Confidence 222356777777 899999999999997 54566666554331 22 34789999998764 358899988
Q ss_pred C-CcccccccccccCEEEEEeCC-------C------------EEEEEcCCCCeeeccccCCCCCcchhhhhhccccccc
Q 003171 487 E-GNLLGGWVAHSSPVIKMAVGA-------G------------YIFTLANHGGIRGWNVTSPGPLDSILCKELAGKEFLY 546 (842)
Q Consensus 487 ~-g~~i~~l~gH~~~V~sla~dg-------~------------~l~S~S~DgtIrvWd~~~~~~~d~~l~~~l~~r~~~y 546 (842)
. .+.-..|.||..+|.++.+.+ + .+++||.|++|.||....+.|+--+ +++...
T Consensus 253 ~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~vi--~~lf~~---- 326 (942)
T KOG0973|consen 253 GTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPLFVI--HNLFNK---- 326 (942)
T ss_pred CCceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCCchhhh--hhhhcC----
Confidence 6 467888999999999987421 1 4679999999999998888886532 223222
Q ss_pred ccccceeEEEEEEEeCCCCCCcccccccccCCCCCceEEEEEeecccCc
Q 003171 547 TRMENLKILAGTWNVGQGRASQDALISWLGSAASDVGIVVVGLQEVEMG 595 (842)
Q Consensus 547 ~~~~~~~i~~~twNv~~~~~~~~~l~~~l~~~~~~~di~viglQE~~~~ 595 (842)
.|.-..|+-.+...-.-+ .|--|++|.|||=+++
T Consensus 327 ------SI~DmsWspdG~~LfacS---------~DGtV~~i~Fee~ElG 360 (942)
T KOG0973|consen 327 ------SIVDMSWSPDGFSLFACS---------LDGTVALIHFEEKELG 360 (942)
T ss_pred ------ceeeeeEcCCCCeEEEEe---------cCCeEEEEEcchHHhC
Confidence 377888987654321111 2345899999997654
|
|
| >KOG0641 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.80 E-value=3.8e-17 Score=161.07 Aligned_cols=245 Identities=16% Similarity=0.177 Sum_probs=167.4
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCcc-----CC--CCCcceeEEecccCCcEEEEEEecCCC-EEEeeCCC
Q 003171 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLL-----DS--DDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGG 262 (842)
Q Consensus 191 ~~~V~~la~dpdg~~LaSGs~DGtIrlWdl~~g~~-----~~--~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~Dg 262 (842)
+..|.+++|.|.|++.+.||...++|+--...-.. +. ..+......-+.|++.|.|.+|||+|+ |++||.|+
T Consensus 32 sqairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~geliatgsndk 111 (350)
T KOG0641|consen 32 SQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCGELIATGSNDK 111 (350)
T ss_pred hhheeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCccCeEEecCCCc
Confidence 67899999999999999999999999875322100 00 011122233467999999999999999 57999999
Q ss_pred cEEEEeCCCccceeecCCCceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcC----CCCEEEEeCCC--cEEE
Q 003171 263 GIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDH----SRAKVWSAGFL--SFAL 336 (842)
Q Consensus 263 tIrvWd~~t~~~~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~----~~~~v~s~s~~--tI~l 336 (842)
+||+-..+...+....+. ++ + ..+.+.++-+++-. .+..+++++-+ .|.+
T Consensus 112 ~ik~l~fn~dt~~~~g~d----le-~-------------------nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~ 167 (350)
T KOG0641|consen 112 TIKVLPFNADTCNATGHD----LE-F-------------------NMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYI 167 (350)
T ss_pred eEEEEecccccccccCcc----ee-e-------------------eecCCceeeeEEecCCCcCceEEEecCCCcceEEE
Confidence 999998765333222211 00 0 01133444444421 34456665533 4555
Q ss_pred EEccCCcEEEEeecCCceEeeeecccCCCcccccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEeecCccc
Q 003171 337 WDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFG 416 (842)
Q Consensus 337 WD~~tg~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~ 416 (842)
=|..+|+....+.+|. +.
T Consensus 168 tdc~~g~~~~a~sght---------------------------------------------------gh----------- 185 (350)
T KOG0641|consen 168 TDCGRGQGFHALSGHT---------------------------------------------------GH----------- 185 (350)
T ss_pred eecCCCCcceeecCCc---------------------------------------------------cc-----------
Confidence 5655555544443332 11
Q ss_pred cCCCceEEEEECCCCcEEEEeCCCeEEEEcC-CCCeeeeeec-------CCccEEEEEe--cCCEEEEEecCcEEEEEeC
Q 003171 417 DDNRRTEALTTSIDGMIWTGGANGLLLQWDP-NGNRLQDFQY-------LPFAVQCLCT--FGSQIWVGYMNGIVQVLDL 486 (842)
Q Consensus 417 ~~~~~v~al~~s~dg~l~Sgs~DgtIrlWD~-~g~~l~~l~~-------H~~~V~sls~--dG~~LasGs~DgtIrlWD~ 486 (842)
|.++.-=.+-.+++||.|.+||+||+ -..|+.++.. .++.|.++++ .|+.|++|-.|..-.|||+
T Consensus 186 -----ilalyswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~dssc~lydi 260 (350)
T KOG0641|consen 186 -----ILALYSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADSSCMLYDI 260 (350)
T ss_pred -----EEEEEEecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeeccCCCceEEEEe
Confidence 11111101224789999999999999 5677777642 3467887775 5889999999999999999
Q ss_pred C-CcccccccccccCEEEEEe--CCCEEEEEcCCCCeeecccc
Q 003171 487 E-GNLLGGWVAHSSPVIKMAV--GAGYIFTLANHGGIRGWNVT 526 (842)
Q Consensus 487 ~-g~~i~~l~gH~~~V~sla~--dg~~l~S~S~DgtIrvWd~~ 526 (842)
. |+.++.+..|+..|.++.+ ...+++++|.|..||+=|++
T Consensus 261 rg~r~iq~f~phsadir~vrfsp~a~yllt~syd~~ikltdlq 303 (350)
T KOG0641|consen 261 RGGRMIQRFHPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQ 303 (350)
T ss_pred eCCceeeeeCCCccceeEEEeCCCceEEEEecccceEEEeecc
Confidence 8 5789999999999999986 45689999999999998864
|
|
| >KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.3e-17 Score=179.46 Aligned_cols=274 Identities=18% Similarity=0.287 Sum_probs=178.3
Q ss_pred cCCEEEE-ecCCCEEEEeCCCCccccccc-cccccCCCCCCCCCCeeeeeecCCCeEEEEEcCCCCEEEEEeCCCcEEEE
Q 003171 141 TEEQLWA-GGENGLRVWNLKELYDESESD-SVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGHRDGRIMCW 218 (842)
Q Consensus 141 ~~~~l~~-~~D~~vrvWdl~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~~~V~~la~dpdg~~LaSGs~DGtIrlW 218 (842)
++...+. +.|++|-=|+..++.....-+ +.-...+++.....+- ..| ...++|+++++||++|+||..|..|.||
T Consensus 153 d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r--~~h-~keil~~avS~Dgkylatgg~d~~v~Iw 229 (479)
T KOG0299|consen 153 DDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESR--KGH-VKEILTLAVSSDGKYLATGGRDRHVQIW 229 (479)
T ss_pred cccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCccc--ccc-cceeEEEEEcCCCcEEEecCCCceEEEe
Confidence 3445554 679999999997665321100 0000011232222111 134 6789999999999999999999999999
Q ss_pred ECCCCccCCCCCcceeEEecccCCcEEEEEEecCC-CEEEeeCCCcEEEEeCCCccceeecCCCceeeeEEEEeeceeec
Q 003171 219 KMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYG-DLWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDL 297 (842)
Q Consensus 219 dl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG-~L~SgS~DgtIrvWd~~t~~~~l~~~~~~~~~~~l~~~~s~~~l 297 (842)
+..+. +.+..|.||+++|.+++|-... +|+|+|.|++||+|+++.....-+++.+.
T Consensus 230 ~~~t~--------ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~vetlyGHq--------------- 286 (479)
T KOG0299|consen 230 DCDTL--------EHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSYVETLYGHQ--------------- 286 (479)
T ss_pred cCccc--------chhhcccccccceeeeeeecCccceeeeecCCceEEEehhHhHHHHHHhCCc---------------
Confidence 99997 6788899999999999997643 49999999999999996533222222221
Q ss_pred ccceeccceeeeecCCEEEEEEcCCCCEEEEeC--CCcEEEEEccCCcEEEEeecCCceEeeeecccCCCcccccceEEE
Q 003171 298 RSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG--FLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTK 375 (842)
Q Consensus 298 ~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s--~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~ 375 (842)
..|..+-.. ...++++.+ |.|++||++.. +..-+|
T Consensus 287 --------------d~v~~IdaL-~reR~vtVGgrDrT~rlwKi~e-esqlif--------------------------- 323 (479)
T KOG0299|consen 287 --------------DGVLGIDAL-SRERCVTVGGRDRTVRLWKIPE-ESQLIF--------------------------- 323 (479)
T ss_pred --------------cceeeechh-cccceEEeccccceeEEEeccc-cceeee---------------------------
Confidence 122222222 233444433 68999999832 111111
Q ss_pred EEecCCCCccceeeeEeecCcceEEecCCcEEEEeecCccccCCCceEEEEECCCCcEEEEeCCCeEEEEcC-CCCeeee
Q 003171 376 IVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGMIWTGGANGLLLQWDP-NGNRLQD 454 (842)
Q Consensus 376 ~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~al~~s~dg~l~Sgs~DgtIrlWD~-~g~~l~~ 454 (842)
.++...+.+++|=.+..++|||.||+|.||++ +.+.+.+
T Consensus 324 ----------------------------------------rg~~~sidcv~~In~~HfvsGSdnG~IaLWs~~KKkplf~ 363 (479)
T KOG0299|consen 324 ----------------------------------------RGGEGSIDCVAFINDEHFVSGSDNGSIALWSLLKKKPLFT 363 (479)
T ss_pred ----------------------------------------eCCCCCeeeEEEecccceeeccCCceEEEeeecccCceeE
Confidence 11223345666666778999999999999999 6666554
Q ss_pred ee-c-----------CCccEEEEEec--CCEEEEEecCcEEEEEeCC-C----cccccccccccCEEEEEe--CCCEEE-
Q 003171 455 FQ-Y-----------LPFAVQCLCTF--GSQIWVGYMNGIVQVLDLE-G----NLLGGWVAHSSPVIKMAV--GAGYIF- 512 (842)
Q Consensus 455 l~-~-----------H~~~V~sls~d--G~~LasGs~DgtIrlWD~~-g----~~i~~l~gH~~~V~sla~--dg~~l~- 512 (842)
.. . +..||++|+.- ...+++|+.+|.||||-++ | +++..+. -.+.|++|++ +|+.++
T Consensus 364 ~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i~~l~~ls-~~GfVNsl~f~~sgk~iva 442 (479)
T KOG0299|consen 364 SRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAINLLYSLS-LVGFVNSLAFSNSGKRIVA 442 (479)
T ss_pred eeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCccccceeeecc-cccEEEEEEEccCCCEEEE
Confidence 43 1 22389999763 3599999999999999986 4 2455554 5678999884 777554
Q ss_pred EEcCCCCeeecc
Q 003171 513 TLANHGGIRGWN 524 (842)
Q Consensus 513 S~S~DgtIrvWd 524 (842)
..+....+=.|-
T Consensus 443 giGkEhRlGRW~ 454 (479)
T KOG0299|consen 443 GIGKEHRLGRWW 454 (479)
T ss_pred ecccccccceee
Confidence 444444444443
|
|
| >KOG1407 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.9e-17 Score=166.84 Aligned_cols=250 Identities=16% Similarity=0.198 Sum_probs=175.1
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCC--CEEEeeCCCcEEEEe
Q 003171 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYG--DLWSGSEGGGIKIWP 268 (842)
Q Consensus 191 ~~~V~~la~dpdg~~LaSGs~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG--~L~SgS~DgtIrvWd 268 (842)
.+.|.++++.-+|..|++|+.|+++++|+++.. ++.......||.+.|-.++++|.. .++++|.|++||+||
T Consensus 20 ~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~------r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd 93 (313)
T KOG1407|consen 20 VQKVHSVAWNCDGTKLASGSFDKTVSVWNLERD------RFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWD 93 (313)
T ss_pred hhcceEEEEcccCceeeecccCCceEEEEecch------hhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEE
Confidence 568999999999999999999999999999875 122234468999999999999865 378999999999999
Q ss_pred CCCccceeecCCCceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcCCCCEEEEeC-CCcEEEEEccCCcEEEE
Q 003171 269 WEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKV 347 (842)
Q Consensus 269 ~~t~~~~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s-~~tI~lWD~~tg~~l~~ 347 (842)
...+++....... ..++ .+.-++++..++.++ ++-|...|+++.+....
T Consensus 94 ~r~~k~~~~i~~~-----------------------------~eni-~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~ 143 (313)
T KOG1407|consen 94 IRSGKCTARIETK-----------------------------GENI-NITWSPDGEYIAVGNKDDRITFIDARTYKIVNE 143 (313)
T ss_pred eccCcEEEEeecc-----------------------------Ccce-EEEEcCCCCEEEEecCcccEEEEEecccceeeh
Confidence 9876554322110 1122 233345555555554 56788889988776554
Q ss_pred eecCCceEeeeecccCCCcccccceEEEEEecCCCCccceeeeEeecCcceE-EecCCcEEE---Eee---cCccccCCC
Q 003171 348 FNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAI-MGAADAVRR---VAA---KGGFGDDNR 420 (842)
Q Consensus 348 l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~-~g~~~~v~~---v~~---~g~~~~~~~ 420 (842)
.+..-.+ +-.. |... .+.+ +....|... +.. -..+..|..
T Consensus 144 ~~~~~e~-ne~~-----------------w~~~---------------nd~Fflt~GlG~v~ILsypsLkpv~si~AH~s 190 (313)
T KOG1407|consen 144 EQFKFEV-NEIS-----------------WNNS---------------NDLFFLTNGLGCVEILSYPSLKPVQSIKAHPS 190 (313)
T ss_pred hccccee-eeee-----------------ecCC---------------CCEEEEecCCceEEEEeccccccccccccCCc
Confidence 4321111 0000 1100 0011 111112111 111 123445777
Q ss_pred ceEEEEECCCCc-EEEEeCCCeEEEEcC-CCCeeeeeecCCccEEEEEe--cCCEEEEEecCcEEEEEeCC-Cccccccc
Q 003171 421 RTEALTTSIDGM-IWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQCLCT--FGSQIWVGYMNGIVQVLDLE-GNLLGGWV 495 (842)
Q Consensus 421 ~v~al~~s~dg~-l~Sgs~DgtIrlWD~-~g~~l~~l~~H~~~V~sls~--dG~~LasGs~DgtIrlWD~~-g~~i~~l~ 495 (842)
...++.|+|+|+ +++|+.|-.+-|||+ +--|++.|.-+..+|..|++ ||++||+||+|..|-|=+++ |..+...
T Consensus 191 nCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~isRldwpVRTlSFS~dg~~lASaSEDh~IDIA~vetGd~~~eI- 269 (313)
T KOG1407|consen 191 NCICIEFDPDGRYFATGSADALVSLWDVDELICERCISRLDWPVRTLSFSHDGRMLASASEDHFIDIAEVETGDRVWEI- 269 (313)
T ss_pred ceEEEEECCCCceEeeccccceeeccChhHhhhheeeccccCceEEEEeccCcceeeccCccceEEeEecccCCeEEEe-
Confidence 788899999998 899999999999999 67899999999999998876 89999999999999999987 6544433
Q ss_pred ccccCEEEEEeCCCE
Q 003171 496 AHSSPVIKMAVGAGY 510 (842)
Q Consensus 496 gH~~~V~sla~dg~~ 510 (842)
-|.++-.+|++++++
T Consensus 270 ~~~~~t~tVAWHPk~ 284 (313)
T KOG1407|consen 270 PCEGPTFTVAWHPKR 284 (313)
T ss_pred eccCCceeEEecCCC
Confidence 477888999988774
|
|
| >KOG0282 consensus mRNA splicing factor [Function unknown] | Back alignment and domain information |
|---|
Probab=99.79 E-value=2e-18 Score=186.60 Aligned_cols=258 Identities=13% Similarity=0.148 Sum_probs=168.7
Q ss_pred ecCCCEEEEeCCCCccccccccccccCCCCCCCCCCeeeeeecCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCC
Q 003171 148 GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDS 227 (842)
Q Consensus 148 ~~D~~vrvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~V~~la~dpdg~~LaSGs~DGtIrlWdl~~g~~~~ 227 (842)
|.|+.|+|||+-. ...| . ..| .+| ..+|..+.|+++|..+.|+|+|+++|+||.++|
T Consensus 234 gmD~~vklW~vy~--~~~~------------l--rtf--~gH-~k~Vrd~~~s~~g~~fLS~sfD~~lKlwDtETG---- 290 (503)
T KOG0282|consen 234 GMDGLVKLWNVYD--DRRC------------L--RTF--KGH-RKPVRDASFNNCGTSFLSASFDRFLKLWDTETG---- 290 (503)
T ss_pred CCCceEEEEEEec--Ccce------------e--hhh--hcc-hhhhhhhhccccCCeeeeeecceeeeeeccccc----
Confidence 5699999999854 1222 1 113 345 789999999999999999999999999999998
Q ss_pred CCCcceeEEecccC-CcEEEEEEecCCC--EEEeeCCCcEEEEeCCCccceeecCCCceeeeEEEEeeceeecccceecc
Q 003171 228 DDGFGEVLSWQAHR-GPVLSLCISSYGD--LWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVN 304 (842)
Q Consensus 228 ~~~~~~~~~l~gH~-~~V~slafs~dG~--L~SgS~DgtIrvWd~~t~~~~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~ 304 (842)
++...+ |. ..++++.|.||+. +++|..|+.|+.||..+++-.-.+ .+++
T Consensus 291 ----~~~~~f--~~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeY---d~hL------------------- 342 (503)
T KOG0282|consen 291 ----QVLSRF--HLDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEY---DRHL------------------- 342 (503)
T ss_pred ----eEEEEE--ecCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHH---Hhhh-------------------
Confidence 555444 43 4678999999994 679999999999999876522111 1111
Q ss_pred ceeeeecCCEEEEEEcCCCCEEEEeC-CCcEEEEEccCCcEEEEeecCCce-EeeeecccCCCcccccceEEEEEecCCC
Q 003171 305 GFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVFNIDGQI-ENRVDMSLLPDFAMEDEFKTKIVTSSKK 382 (842)
Q Consensus 305 ~~~~~~s~~v~~las~~~~~~v~s~s-~~tI~lWD~~tg~~l~~l~~~~~~-~~~~~~s~~~~~~~~~~~~~~~~s~~~~ 382 (842)
..+..+.+-+.+.+..+++ +++++||+......++-..-..+. .-.+...+.......+.+
T Consensus 343 -------g~i~~i~F~~~g~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~---------- 405 (503)
T KOG0282|consen 343 -------GAILDITFVDEGRRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSM---------- 405 (503)
T ss_pred -------hheeeeEEccCCceEeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhcc----------
Confidence 1233344455667777766 479999999888776533211111 001111111111110000
Q ss_pred CccceeeeEeecCcceEEecCCcEEEEeecCccccCC--CceEEEEECCCCc-EEEEeCCCeEEEEcC-CCCeeeeeecC
Q 003171 383 DKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDN--RRTEALTTSIDGM-IWTGGANGLLLQWDP-NGNRLQDFQYL 458 (842)
Q Consensus 383 ~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~--~~v~al~~s~dg~-l~Sgs~DgtIrlWD~-~g~~l~~l~~H 458 (842)
...+.+-....-.+.+.+-.|.+|. +.-..+.|||||. |++|..||.+.+||- +-+.+..+++|
T Consensus 406 ------------dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl~~~lkah 473 (503)
T KOG0282|consen 406 ------------DNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTTKLVSKLKAH 473 (503)
T ss_pred ------------CceEEEEecccccccCHhhhhcceeccCceeeEEEcCCCCeEEeecCCccEEEeechhhhhhhccccC
Confidence 0000111111111222223344443 2334578999998 899999999999999 67889999999
Q ss_pred CccEEEEEec---CCEEEEEecCcEEEEEe
Q 003171 459 PFAVQCLCTF---GSQIWVGYMNGIVQVLD 485 (842)
Q Consensus 459 ~~~V~sls~d---G~~LasGs~DgtIrlWD 485 (842)
..++..+... ...+|+++.||.|++||
T Consensus 474 ~~~ci~v~wHP~e~Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 474 DQPCIGVDWHPVEPSKVATCGWDGLIKIWD 503 (503)
T ss_pred CcceEEEEecCCCcceeEecccCceeEecC
Confidence 9998887652 45999999999999997
|
|
| >KOG0646 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.78 E-value=5.6e-18 Score=182.55 Aligned_cols=207 Identities=16% Similarity=0.302 Sum_probs=158.6
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCCC-EEEeeCCCcEEEEeC
Q 003171 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPW 269 (842)
Q Consensus 191 ~~~V~~la~dpdg~~LaSGs~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~ 269 (842)
.++|.|++.+|.|.+|+.|+-.|.|.+|.+.+| ..+..|.+|..+|+++.|+.||. |+|||.||.|.+|.+
T Consensus 81 Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG--------~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l 152 (476)
T KOG0646|consen 81 PGPVHALASSNLGYFLLAGTISGNLYLWELSSG--------ILLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLL 152 (476)
T ss_pred ccceeeeecCCCceEEEeecccCcEEEEEeccc--------cHHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEE
Confidence 468999999999999999999999999999998 67778899999999999999998 789999999999987
Q ss_pred CCccceeecCCCceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcCCCCEEEEeCCCcEEEEEccCCcEEEEee
Q 003171 270 EAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGFLSFALWDARTRELLKVFN 349 (842)
Q Consensus 270 ~t~~~~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s~~tI~lWD~~tg~~l~~l~ 349 (842)
.+ +++...+. +-+++..|.
T Consensus 153 ~~---------------------------------------------lv~a~~~~----------------~~~p~~~f~ 171 (476)
T KOG0646|consen 153 TD---------------------------------------------LVSADNDH----------------SVKPLHIFS 171 (476)
T ss_pred Ee---------------------------------------------ecccccCC----------------Cccceeeec
Confidence 22 01100000 011112222
Q ss_pred cCCceEeeeecccCCCcccccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEeecCccccCCCceEEEEEC-
Q 003171 350 IDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTS- 428 (842)
Q Consensus 350 ~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~al~~s- 428 (842)
.|. -.|..+.+.
T Consensus 172 ~Ht-------------------------------------------------------------------lsITDl~ig~ 184 (476)
T KOG0646|consen 172 DHT-------------------------------------------------------------------LSITDLQIGS 184 (476)
T ss_pred cCc-------------------------------------------------------------------ceeEEEEecC
Confidence 221 112222222
Q ss_pred --CCCcEEEEeCCCeEEEEcC-CCCeeeeeecCCccEEEEEec--CCEEEEEecCcEEEEEeCC----------------
Q 003171 429 --IDGMIWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQCLCTF--GSQIWVGYMNGIVQVLDLE---------------- 487 (842)
Q Consensus 429 --~dg~l~Sgs~DgtIrlWD~-~g~~l~~l~~H~~~V~sls~d--G~~LasGs~DgtIrlWD~~---------------- 487 (842)
.+++|+|+|.|.++|+||+ .|.++.++.- ...++++..| ++++++|+.+|.|.+-++.
T Consensus 185 Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~f-p~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~ 263 (476)
T KOG0646|consen 185 GGTNARLYTASEDRTIKLWDLSLGVLLLTITF-PSSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHE 263 (476)
T ss_pred CCccceEEEecCCceEEEEEeccceeeEEEec-CCcceeEEEcccccEEEecCCcceEEeeehhcCCccccccccccccc
Confidence 2457999999999999999 6888887754 5678888765 6799999999999888742
Q ss_pred -Cccccccccccc--CEEEEE--eCCCEEEEEcCCCCeeeccccCCCCCcch
Q 003171 488 -GNLLGGWVAHSS--PVIKMA--VGAGYIFTLANHGGIRGWNVTSPGPLDSI 534 (842)
Q Consensus 488 -g~~i~~l~gH~~--~V~sla--~dg~~l~S~S~DgtIrvWd~~~~~~~d~~ 534 (842)
+..+..+.||.+ .|+|++ .||+.|+||+.||.|+|||+.+...+..+
T Consensus 264 ~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~Q~iRtl 315 (476)
T KOG0646|consen 264 ENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIYSKQCIRTL 315 (476)
T ss_pred ccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEecchHHHHHHH
Confidence 124678999999 999988 59999999999999999998876555444
|
|
| >KOG0289 consensus mRNA splicing factor [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.78 E-value=5.5e-17 Score=173.15 Aligned_cols=268 Identities=16% Similarity=0.161 Sum_probs=207.1
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCCC-EEEeeCCCcEEEEeC
Q 003171 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPW 269 (842)
Q Consensus 191 ~~~V~~la~dpdg~~LaSGs~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~ 269 (842)
...+.++...|....+.||+.|.++.++|...+ +.+..++||+..|+++.|+|+.. ..++|.|..||||..
T Consensus 219 ~pgi~ald~~~s~~~ilTGG~d~~av~~d~~s~--------q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~ 290 (506)
T KOG0289|consen 219 TPGITALDIIPSSSKILTGGEDKTAVLFDKPSN--------QILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSV 290 (506)
T ss_pred CCCeeEEeecCCCCcceecCCCCceEEEecchh--------hhhhhccCcceEEEEEEeccchhheeecCCcceEEeecc
Confidence 446777777777688999999999999999886 66778999999999999999987 679999999999998
Q ss_pred CCccceeecCCCceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcCCCCEEEEeC-CCcEEEEEccCCcEEEEe
Q 003171 270 EAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVF 348 (842)
Q Consensus 270 ~t~~~~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s-~~tI~lWD~~tg~~l~~l 348 (842)
..........+ | ...|+.+...+.+..+.+++ +++...-|.++|.++.+.
T Consensus 291 ~~~s~~~~~~~-------------------h----------~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~v 341 (506)
T KOG0289|consen 291 PLSSEPTSSRP-------------------H----------EEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVV 341 (506)
T ss_pred ccccCcccccc-------------------c----------cccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEE
Confidence 55321111111 1 34566666666666555554 678889999999887665
Q ss_pred ecCCceEeeeecccCCCcccccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEee------cCccccCCCce
Q 003171 349 NIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAA------KGGFGDDNRRT 422 (842)
Q Consensus 349 ~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~------~g~~~~~~~~v 422 (842)
..... +....+..|.+++....+|+.+++.++|. ...|.+|...|
T Consensus 342 s~~~s-----------------------------~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks~~~~a~Fpght~~v 392 (506)
T KOG0289|consen 342 SDETS-----------------------------DVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQTNVAKFPGHTGPV 392 (506)
T ss_pred eeccc-----------------------------cceeEEeeEcCCceEEeccCCCceEEEEEcCCccccccCCCCCCce
Confidence 43211 11223456777777778889999999886 24688899999
Q ss_pred EEEEECCCCc-EEEEeCCCeEEEEcC-CCCeeeeeecCC-ccEEEEEec--CCEEEEEecCcEEEEEeCC---Ccccccc
Q 003171 423 EALTTSIDGM-IWTGGANGLLLQWDP-NGNRLQDFQYLP-FAVQCLCTF--GSQIWVGYMNGIVQVLDLE---GNLLGGW 494 (842)
Q Consensus 423 ~al~~s~dg~-l~Sgs~DgtIrlWD~-~g~~l~~l~~H~-~~V~sls~d--G~~LasGs~DgtIrlWD~~---g~~i~~l 494 (842)
.++.|+.+|+ |++++.|+.|++||+ .-+..+++.... ..|.++++| |++|++++.|=+|.+.+-. .+++..+
T Consensus 393 k~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~k~W~~~~~~ 472 (506)
T KOG0289|consen 393 KAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQLDEKKEVNSLSFDQSGTYLGIAGSDLQVYICKKKTKSWTEIKEL 472 (506)
T ss_pred eEEEeccCceEEEEEecCCeEEEEEehhhcccceeeccccccceeEEEcCCCCeEEeecceeEEEEEecccccceeeehh
Confidence 9999999999 899999999999999 567777776433 468888875 8899999888777777743 4578889
Q ss_pred cccccCEEEEEe--CCCEEEEEcCCCCeeecc
Q 003171 495 VAHSSPVIKMAV--GAGYIFTLANHGGIRGWN 524 (842)
Q Consensus 495 ~gH~~~V~sla~--dg~~l~S~S~DgtIrvWd 524 (842)
.-|++..+++.+ +.++++++|-|...|+..
T Consensus 473 ~~~sg~st~v~Fg~~aq~l~s~smd~~l~~~a 504 (506)
T KOG0289|consen 473 ADHSGLSTGVRFGEHAQYLASTSMDAILRLYA 504 (506)
T ss_pred hhcccccceeeecccceEEeeccchhheEEee
Confidence 999999999986 567899999999988764
|
|
| >KOG0293 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.7e-17 Score=175.82 Aligned_cols=257 Identities=11% Similarity=0.064 Sum_probs=167.0
Q ss_pred ecCCCEEEEeCCCCccccccccccccCCCCCCCCCCeeeeeecCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCC
Q 003171 148 GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDS 227 (842)
Q Consensus 148 ~~D~~vrvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~V~~la~dpdg~~LaSGs~DGtIrlWdl~~g~~~~ 227 (842)
+.|.+.-+|.+..-..... -++-..| ..+|.-+.||||.++|++++.|..+++||+.+|
T Consensus 243 SkD~Taiiw~v~~d~~~kl----------------~~tlvgh-~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tg---- 301 (519)
T KOG0293|consen 243 SKDSTAIIWIVVYDVHFKL----------------KKTLVGH-SQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTG---- 301 (519)
T ss_pred cCCceEEEEEEecCcceee----------------eeeeecc-cCceEEEEECCCCCeEEecCchHheeeccCCcc----
Confidence 4599999998742111100 0111223 789999999999999999999999999999998
Q ss_pred CCCcceeEEe-cccCCcEEEEEEecCCC-EEEeeCCCcEEEEeCCCccc-eeecCCCceeeeEEEEeeceeecccceecc
Q 003171 228 DDGFGEVLSW-QAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEK-ALSLKPEERHTAALIVERSYIDLRSHLSVN 304 (842)
Q Consensus 228 ~~~~~~~~~l-~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~~t~~~-~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~ 304 (842)
...+.+ .+|...|.|+++.|||. +++||.|++|..||++.... ....
T Consensus 302 ----d~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn~~~~W~g-------------------------- 351 (519)
T KOG0293|consen 302 ----DLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGNILGNWEG-------------------------- 351 (519)
T ss_pred ----hhhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecCCcchhhcccc--------------------------
Confidence 333332 45678999999999997 99999999999999976321 1110
Q ss_pred ceeeeecCCEEEEEEcCCCCEEEEe-CCCcEEEEEccCCcEEEEeecCCceEeeeecccCCCcccccceEEEEEecCCCC
Q 003171 305 GFSSILTSDIKNLLSDHSRAKVWSA-GFLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKD 383 (842)
Q Consensus 305 ~~~~~~s~~v~~las~~~~~~v~s~-s~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~ 383 (842)
+..+.+..++..++|..|... .|..|++++.++...++..+-+ +...+..++.+... .++.-..
T Consensus 352 ----vr~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~dr~lise~-~~its~~iS~d~k~--------~LvnL~~-- 416 (519)
T KOG0293|consen 352 ----VRDPKVHDLAITYDGKYVLLVTVDKKIRLYNREARVDRGLISEE-QPITSFSISKDGKL--------ALVNLQD-- 416 (519)
T ss_pred ----cccceeEEEEEcCCCcEEEEEecccceeeechhhhhhhcccccc-CceeEEEEcCCCcE--------EEEEccc--
Confidence 012456678877777766554 4788999999887665433222 22223333222211 1111100
Q ss_pred ccceeeeEeecCc----ceEEecCCcEEEEeecCccccCCCceEEEEECC-C-CcEEEEeCCCeEEEEcC-CCCeeeeee
Q 003171 384 KAQSSFGFFQRSR----NAIMGAADAVRRVAAKGGFGDDNRRTEALTTSI-D-GMIWTGGANGLLLQWDP-NGNRLQDFQ 456 (842)
Q Consensus 384 ~~~~s~~~~~~~~----~~~~g~~~~v~~v~~~g~~~~~~~~v~al~~s~-d-g~l~Sgs~DgtIrlWD~-~g~~l~~l~ 456 (842)
..+..|+-.. ....|+.-+- .+..-.|.- + .-++|||+|+.|++|+. +|+.+.++.
T Consensus 417 ---qei~LWDl~e~~lv~kY~Ghkq~~--------------fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~Ls 479 (519)
T KOG0293|consen 417 ---QEIHLWDLEENKLVRKYFGHKQGH--------------FIIRSCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVLS 479 (519)
T ss_pred ---CeeEEeecchhhHHHHhhcccccc--------------eEEEeccCCCCcceEEecCCCceEEEEEccCCceeEeec
Confidence 0011121110 1112222111 111112222 2 23899999999999999 899999999
Q ss_pred cCCccEEEEEe---cCCEEEEEecCcEEEEEeCC
Q 003171 457 YLPFAVQCLCT---FGSQIWVGYMNGIVQVLDLE 487 (842)
Q Consensus 457 ~H~~~V~sls~---dG~~LasGs~DgtIrlWD~~ 487 (842)
||+..|+|++. +..++|||+.|||||||-..
T Consensus 480 GHs~~vNcVswNP~~p~m~ASasDDgtIRIWg~~ 513 (519)
T KOG0293|consen 480 GHSKTVNCVSWNPADPEMFASASDDGTIRIWGPS 513 (519)
T ss_pred CCcceeeEEecCCCCHHHhhccCCCCeEEEecCC
Confidence 99999999985 45699999999999999764
|
|
| >KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.77 E-value=3.4e-17 Score=177.45 Aligned_cols=221 Identities=20% Similarity=0.279 Sum_probs=163.6
Q ss_pred CCEEEEec-CCCEEEEeCCCCccccccccccccCCCCCCCCCCeeeeeecCCCeEEEEEcCC-CCEEEEEeCCCcEEEEE
Q 003171 142 EEQLWAGG-ENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEA-SGVVWSGHRDGRIMCWK 219 (842)
Q Consensus 142 ~~~l~~~~-D~~vrvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~V~~la~dpd-g~~LaSGs~DGtIrlWd 219 (842)
+..|.+|. .|.|+|+|..+- ..-. .+. .| ..||..+.|+|+ +.++++|+.|+.+++||
T Consensus 80 G~LlaaGD~sG~V~vfD~k~r-~iLR----------------~~~--ah-~apv~~~~f~~~d~t~l~s~sDd~v~k~~d 139 (487)
T KOG0310|consen 80 GRLLAAGDESGHVKVFDMKSR-VILR----------------QLY--AH-QAPVHVTKFSPQDNTMLVSGSDDKVVKYWD 139 (487)
T ss_pred CeEEEccCCcCcEEEeccccH-HHHH----------------HHh--hc-cCceeEEEecccCCeEEEecCCCceEEEEE
Confidence 44444444 579999996541 1110 111 23 778999999985 57888899999999999
Q ss_pred CCCCccCCCCCcceeEEecccCCcEEEEEEecCCC--EEEeeCCCcEEEEeCCCc-cceeecCCCceeeeEEEEeeceee
Q 003171 220 MNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD--LWSGSEGGGIKIWPWEAI-EKALSLKPEERHTAALIVERSYID 296 (842)
Q Consensus 220 l~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~--L~SgS~DgtIrvWd~~t~-~~~l~~~~~~~~~~~l~~~~s~~~ 296 (842)
+.+. .....+.||++.|.|.+++|-.. ++|||.||+||+||+.+. ....++.
T Consensus 140 ~s~a--------~v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~eln----------------- 194 (487)
T KOG0310|consen 140 LSTA--------YVQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVELN----------------- 194 (487)
T ss_pred cCCc--------EEEEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeEEec-----------------
Confidence 9996 44668999999999999999654 689999999999999663 2222221
Q ss_pred cccceeccceeeeecCCEEEEEEcCCCCEEEEeCCCcEEEEEccCCcEEEEeecCCceEeeeecccCCCcccccceEEEE
Q 003171 297 LRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGFLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKI 376 (842)
Q Consensus 297 l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~ 376 (842)
| .-.|..+++-++|..|++++...+++||+.+|..+.+.
T Consensus 195 ---h----------g~pVe~vl~lpsgs~iasAgGn~vkVWDl~~G~qll~~---------------------------- 233 (487)
T KOG0310|consen 195 ---H----------GCPVESVLALPSGSLIASAGGNSVKVWDLTTGGQLLTS---------------------------- 233 (487)
T ss_pred ---C----------CCceeeEEEcCCCCEEEEcCCCeEEEEEecCCceehhh----------------------------
Confidence 1 11345566667788999999899999999876431110
Q ss_pred EecCCCCccceeeeEeecCcceEEecCCcEEEEeecCccccCCCceEEEEECCCCc-EEEEeCCCeEEEEcC-CCCeeee
Q 003171 377 VTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGM-IWTGGANGLLLQWDP-NGNRLQD 454 (842)
Q Consensus 377 ~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~al~~s~dg~-l~Sgs~DgtIrlWD~-~g~~l~~ 454 (842)
+..|.+.|+++.+..+++ |+||+-|+.||++|. +-+.+..
T Consensus 234 --------------------------------------~~~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~Kvv~s 275 (487)
T KOG0310|consen 234 --------------------------------------MFNHNKTVTCLRLASDSTRLLSGSLDRHVKVFDTTNYKVVHS 275 (487)
T ss_pred --------------------------------------hhcccceEEEEEeecCCceEeecccccceEEEEccceEEEEe
Confidence 123667788888877776 999999999999998 5677777
Q ss_pred eecCCccEEEEE--ecCCEEEEEecCcEEEEEeCC
Q 003171 455 FQYLPFAVQCLC--TFGSQIWVGYMNGIVQVLDLE 487 (842)
Q Consensus 455 l~~H~~~V~sls--~dG~~LasGs~DgtIrlWD~~ 487 (842)
+. -.++|.+++ ++++.++.|-.+|.+-+-+..
T Consensus 276 ~~-~~~pvLsiavs~dd~t~viGmsnGlv~~rr~~ 309 (487)
T KOG0310|consen 276 WK-YPGPVLSIAVSPDDQTVVIGMSNGLVSIRRRE 309 (487)
T ss_pred ee-cccceeeEEecCCCceEEEecccceeeeehhh
Confidence 75 478999875 577899999999998777544
|
|
| >KOG1408 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.77 E-value=2e-16 Score=176.66 Aligned_cols=385 Identities=13% Similarity=0.112 Sum_probs=224.2
Q ss_pred EEecCCEEEE-ecCCCEEEEeCCCCccccc-cccccccCC--CCCCCCCCeeeeeec-CCCeEEEEEcCCCCEEEEEeCC
Q 003171 138 IVCTEEQLWA-GGENGLRVWNLKELYDESE-SDSVSVSKS--KGEDGTAPFKESVKG-VSSVMCMVGDEASGVVWSGHRD 212 (842)
Q Consensus 138 l~~~~~~l~~-~~D~~vrvWdl~~~~~~~~-~~~~~~~~~--~~~~~~~~~~~~~~g-~~~V~~la~dpdg~~LaSGs~D 212 (842)
|....+.++. ..++.||+++.++....+. -.+-.+|.. .+-+....+.++-.+ -.-..++.||+....|..-..|
T Consensus 266 IcVs~r~I~cgCa~g~vrlFnp~tL~y~~Tlpr~halg~d~a~~~q~~~~~s~~~~a~fPD~IA~~Fdet~~klscVYnd 345 (1080)
T KOG1408|consen 266 ICVSSRLIACGCAKGMVRLFNPETLDYAGTLPRSHALGSDTANLSQPEPKNSESSPAIFPDAIACQFDETTDKLSCVYND 345 (1080)
T ss_pred eeeecceEEEeeccceeeecCcchhhhccccccccccccchhhcccccccccccCcccCCceeEEEecCCCceEEEEEcC
Confidence 3344544443 5799999999877643321 000011110 011111111111111 1224578899999999999999
Q ss_pred CcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEec------------CCCEEEeeCCCcEEEEeCCCccceeecC-
Q 003171 213 GRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISS------------YGDLWSGSEGGGIKIWPWEAIEKALSLK- 279 (842)
Q Consensus 213 GtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~------------dG~L~SgS~DgtIrvWd~~t~~~~l~~~- 279 (842)
..+.+||+..- +.......+.-|...|++|---| .+-+.|+|.|+|||||+++.....-.+.
T Consensus 346 hSlYvWDvrD~-----~kvgk~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRlW~l~~ctnn~vyrR 420 (1080)
T KOG1408|consen 346 HSLYVWDVRDV-----NKVGKCSSMLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRLWDLAFCTNNQVYRR 420 (1080)
T ss_pred ceEEEEecccc-----ccccceeeeeeccceeeeeccccccccCcccccCCccceeEecCCCcEEEeecccccccceeec
Confidence 99999999874 33344566778999999885544 2447899999999999997622111100
Q ss_pred -CCceeeeEEEEeec-eeec--cc--ceeccce-eeeecCCEEEEEEcCCCCEEEEeCC-CcEEEEEccCCcEEEEeecC
Q 003171 280 -PEERHTAALIVERS-YIDL--RS--HLSVNGF-SSILTSDIKNLLSDHSRAKVWSAGF-LSFALWDARTRELLKVFNID 351 (842)
Q Consensus 280 -~~~~~~~~l~~~~s-~~~l--~~--~~~~~~~-~~~~s~~v~~las~~~~~~v~s~s~-~tI~lWD~~tg~~l~~l~~~ 351 (842)
.-...+....++.+ ...+ .+ ....+++ ..-+-..+++++.++++..+++|.- ++++++|+..-+.+.....|
T Consensus 421 Nils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~~~~~eAH 500 (1080)
T KOG1408|consen 421 NILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQELEYTCFMEAH 500 (1080)
T ss_pred ccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCcceecccCccCceEEEEehhhhhhhheecc
Confidence 00000000000000 0000 00 0000011 0012346899999999999998874 68999999876665555555
Q ss_pred CceEeeeecccCCC---c--ccccceEEEEEecCC----------CCccceeeeEeecCc--ceEEecCCc--EEEEee-
Q 003171 352 GQIENRVDMSLLPD---F--AMEDEFKTKIVTSSK----------KDKAQSSFGFFQRSR--NAIMGAADA--VRRVAA- 411 (842)
Q Consensus 352 ~~~~~~~~~s~~~~---~--~~~~~~~~~~~s~~~----------~~~~~~s~~~~~~~~--~~~~g~~~~--v~~v~~- 411 (842)
...+-.+.++.... . +...+..+.++...+ ...++.++.|--.+. +.+.-.+|. .+|++.
T Consensus 501 esEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk 580 (1080)
T KOG1408|consen 501 ESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQK 580 (1080)
T ss_pred cceeEEEeecCchhhhHhhhhccCCceEEEEecccccchhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhcc
Confidence 44332333322100 0 000000011111110 111233455554442 222222222 122222
Q ss_pred --cC-ccccCC-----CceEEEEECCCCc-EEEEeCCCeEEEEcC-CCCeeeeeec---CCccEEEE--EecCCEEEEEe
Q 003171 412 --KG-GFGDDN-----RRTEALTTSIDGM-IWTGGANGLLLQWDP-NGNRLQDFQY---LPFAVQCL--CTFGSQIWVGY 476 (842)
Q Consensus 412 --~g-~~~~~~-----~~v~al~~s~dg~-l~Sgs~DgtIrlWD~-~g~~l~~l~~---H~~~V~sl--s~dG~~LasGs 476 (842)
.| .|..+. ..+..++..|.-. +++++.|..||++|+ +|+..+.|++ |.+..-.+ .|.|-|||+.+
T Consensus 581 ~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atSc 660 (1080)
T KOG1408|consen 581 ASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSC 660 (1080)
T ss_pred ccCceeccccccccccceEEEeeeCCCcceEEEEecccceEEEeccccceeeeecccccCCCceEEEEECCCccEEEEee
Confidence 12 233332 2455677878765 799999999999999 7999999986 43333333 56788999999
Q ss_pred cCcEEEEEeCC-CcccccccccccCEEEEEe--CCCEEEEEcCCCCeeeccccC
Q 003171 477 MNGIVQVLDLE-GNLLGGWVAHSSPVIKMAV--GAGYIFTLANHGGIRGWNVTS 527 (842)
Q Consensus 477 ~DgtIrlWD~~-g~~i~~l~gH~~~V~sla~--dg~~l~S~S~DgtIrvWd~~~ 527 (842)
.|++|.++|.- |+|+..+.||...|+.+.+ |-+.|+|+|.||.|-+|.+..
T Consensus 661 sdktl~~~Df~sgEcvA~m~GHsE~VTG~kF~nDCkHlISvsgDgCIFvW~lp~ 714 (1080)
T KOG1408|consen 661 SDKTLCFVDFVSGECVAQMTGHSEAVTGVKFLNDCKHLISVSGDGCIFVWKLPL 714 (1080)
T ss_pred cCCceEEEEeccchhhhhhcCcchheeeeeecccchhheeecCCceEEEEECch
Confidence 99999999975 9999999999999999985 788999999999999999643
|
|
| >KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.6e-16 Score=163.10 Aligned_cols=256 Identities=19% Similarity=0.252 Sum_probs=155.0
Q ss_pred eeEEEEecC--CEEE-Ee-cCCCEEEEeCCCC-ccccccccccccCCCCCCCCCCeeeeeecCCCeEEEEEcCCCCEEEE
Q 003171 134 FLRTIVCTE--EQLW-AG-GENGLRVWNLKEL-YDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWS 208 (842)
Q Consensus 134 ~~~~l~~~~--~~l~-~~-~D~~vrvWdl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~V~~la~dpdg~~LaS 208 (842)
.|..|+++. ..+. +| -|++||+|+++.. ... +.+ ..-+ .+||+|++|+.||..+++
T Consensus 29 sIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~---------------~ka---~~~~-~~PvL~v~WsddgskVf~ 89 (347)
T KOG0647|consen 29 SISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLV---------------PKA---QQSH-DGPVLDVCWSDDGSKVFS 89 (347)
T ss_pred chheeEeccccCceEEecccCCceEEEEEecCCccc---------------chh---hhcc-CCCeEEEEEccCCceEEe
Confidence 455666653 2444 44 4999999999752 111 111 1112 789999999999999999
Q ss_pred EeCCCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCCC---EEEeeCCCcEEEEeCCCccceeecCCCceee
Q 003171 209 GHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD---LWSGSEGGGIKIWPWEAIEKALSLKPEERHT 285 (842)
Q Consensus 209 Gs~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~---L~SgS~DgtIrvWd~~t~~~~l~~~~~~~~~ 285 (842)
|+-|+.+++||+.++ +..+...|.++|.++.|-+... |+|||+|+|||.||........++...+
T Consensus 90 g~~Dk~~k~wDL~S~---------Q~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LPe--- 157 (347)
T KOG0647|consen 90 GGCDKQAKLWDLASG---------QVSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLPE--- 157 (347)
T ss_pred eccCCceEEEEccCC---------CeeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeeccc---
Confidence 999999999999995 4677889999999999987543 7899999999999996533222221111
Q ss_pred eEEEEeeceeecccceeccceeeeecCCEEEEEEcCCCC-EEEEeCCCcEEEEEccCCcEEEEeecCCceEeeeecccCC
Q 003171 286 AALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRA-KVWSAGFLSFALWDARTRELLKVFNIDGQIENRVDMSLLP 364 (842)
Q Consensus 286 ~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~-~v~s~s~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~ 364 (842)
++.+.+-... .|.+..++.|.+++++.+.... .... ++.
T Consensus 158 -----------------------------RvYa~Dv~~pm~vVata~r~i~vynL~n~~te~--k~~~--------SpL- 197 (347)
T KOG0647|consen 158 -----------------------------RVYAADVLYPMAVVATAERHIAVYNLENPPTEF--KRIE--------SPL- 197 (347)
T ss_pred -----------------------------eeeehhccCceeEEEecCCcEEEEEcCCCcchh--hhhc--------Ccc-
Confidence 1111111111 2223345788899887653211 0000 000
Q ss_pred CcccccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEe---e---cC--ccc---------cCCCceEEEEE
Q 003171 365 DFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVA---A---KG--GFG---------DDNRRTEALTT 427 (842)
Q Consensus 365 ~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~---~---~g--~~~---------~~~~~v~al~~ 427 (842)
+ -...+++.+++....++|+-.|-..+. . +. +|. .....|.+++|
T Consensus 198 --------k----------~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~F 259 (347)
T KOG0647|consen 198 --------K----------WQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIAF 259 (347)
T ss_pred --------c----------ceeeEEEEEecCCceEeeeecceEEEEecCCCCccCceeEEEeccCCCCCCceEEecceEe
Confidence 0 001133444443333444433322211 1 00 011 11334566888
Q ss_pred CCC-CcEEEEeCCCeEEEEcC-CCCeeeeeecCCccEEEEEe--cCCEE-EEEecC
Q 003171 428 SID-GMIWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQCLCT--FGSQI-WVGYMN 478 (842)
Q Consensus 428 s~d-g~l~Sgs~DgtIrlWD~-~g~~l~~l~~H~~~V~sls~--dG~~L-asGs~D 478 (842)
.|. |.|++++.||+..+||- ....|++...|..+|.|-++ +|+++ ++.+.|
T Consensus 260 hP~hgtlvTaGsDGtf~FWDkdar~kLk~s~~~~qpItcc~fn~~G~ifaYA~gYD 315 (347)
T KOG0647|consen 260 HPVHGTLVTAGSDGTFSFWDKDARTKLKTSETHPQPITCCSFNRNGSIFAYALGYD 315 (347)
T ss_pred ecccceEEEecCCceEEEecchhhhhhhccCcCCCccceeEecCCCCEEEEEeecc
Confidence 774 67899999999999998 45678888888999988766 56633 343333
|
|
| >KOG0288 consensus WD40 repeat protein TipD [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.76 E-value=3.8e-18 Score=181.13 Aligned_cols=258 Identities=16% Similarity=0.215 Sum_probs=183.1
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCCC-EEEeeCCCcEEEEeC
Q 003171 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPW 269 (842)
Q Consensus 191 ~~~V~~la~dpdg~~LaSGs~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~ 269 (842)
.+.|..+.|-++...|++|+.|..|++|+...+. .....+|.|-.++|+++.|.++++ ++++|.|+.+++|++
T Consensus 175 ~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k------~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wnv 248 (459)
T KOG0288|consen 175 EGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEK------SELISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRLWNV 248 (459)
T ss_pred ccccceeEEccCcchhhhcchhhhhhhhhcccch------hhhhhhhhccCCCcceeeecCCCceEEeecCCCceeeeec
Confidence 6678888898888999999999999999988752 235667888889999999999998 789999999999999
Q ss_pred CCccceeecCCCceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcCCCCEEEEeC-CCcEEEEEccCCcEEEEe
Q 003171 270 EAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVF 348 (842)
Q Consensus 270 ~t~~~~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s-~~tI~lWD~~tg~~l~~l 348 (842)
+.....-++ .+| +.+|.++-+.-....|.+++ |.+||+||+..+.|.+++
T Consensus 249 d~~r~~~TL-------------------sGH----------tdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~ 299 (459)
T KOG0288|consen 249 DSLRLRHTL-------------------SGH----------TDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTV 299 (459)
T ss_pred cchhhhhhh-------------------ccc----------ccceeeehhhccccceeeccccchhhhhhhhhhheeccc
Confidence 764321111 122 34444444443444477777 689999999998887664
Q ss_pred ecCCceEeeeecccCCCcccccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEeecCccccCCCceEEEEEC
Q 003171 349 NIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTS 428 (842)
Q Consensus 349 ~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~al~~s 428 (842)
-+-.+. ..++.+
T Consensus 300 l~~S~c--------------------------------------------------------------------nDI~~~ 311 (459)
T KOG0288|consen 300 LPGSQC--------------------------------------------------------------------NDIVCS 311 (459)
T ss_pred cccccc--------------------------------------------------------------------cceEec
Confidence 321110 011111
Q ss_pred CCCcEEEEeCCCeEEEEcC-CCCeeeeeecCCccEEEE--EecCCEEEEEecCcEEEEEeCCCc-cccccc------ccc
Q 003171 429 IDGMIWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQCL--CTFGSQIWVGYMNGIVQVLDLEGN-LLGGWV------AHS 498 (842)
Q Consensus 429 ~dg~l~Sgs~DgtIrlWD~-~g~~l~~l~~H~~~V~sl--s~dG~~LasGs~DgtIrlWD~~g~-~i~~l~------gH~ 498 (842)
.-.++||+.|++||+||. .+.+++....|. .|+++ +++|..|.+.+.|.++.+.|+.+. ..+++. +|.
T Consensus 312 -~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg-~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asD 389 (459)
T KOG0288|consen 312 -ISDVISGHFDKKVRFWDIRSADKTRSVPLGG-RVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASD 389 (459)
T ss_pred -ceeeeecccccceEEEeccCCceeeEeecCc-ceeeEeeccCCeEEeeecCCCceeeeecccccEEEEeeccccccccc
Confidence 113688999999999998 678888887766 89987 468889999999999999999864 334443 343
Q ss_pred cCEEEEEeCCCEEEEEcCCCCeeeccccCCCCCcchhhhhhcccccccccccceeEEEEEEEeCCC
Q 003171 499 SPVIKMAVGAGYIFTLANHGGIRGWNVTSPGPLDSILCKELAGKEFLYTRMENLKILAGTWNVGQG 564 (842)
Q Consensus 499 ~~V~sla~dg~~l~S~S~DgtIrvWd~~~~~~~d~~l~~~l~~r~~~y~~~~~~~i~~~twNv~~~ 564 (842)
-.-..+++|+.|+++||.||.|.||++.+... ...+. .. ..+.-|+...||-.+.
T Consensus 390 wtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKl-E~~l~----~s------~s~~aI~s~~W~~sG~ 444 (459)
T KOG0288|consen 390 WTRVVFSPDGSYVAAGSADGSVYIWSVFTGKL-EKVLS----LS------TSNAAITSLSWNPSGS 444 (459)
T ss_pred cceeEECCCCceeeeccCCCcEEEEEccCceE-EEEec----cC------CCCcceEEEEEcCCCc
Confidence 21222347999999999999999999866322 22211 11 0111489999998654
|
|
| >KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown] | Back alignment and domain information |
|---|
Probab=99.76 E-value=2.5e-17 Score=182.84 Aligned_cols=304 Identities=15% Similarity=0.169 Sum_probs=186.1
Q ss_pred EEEEe-cCCCEEEEeCCCCccccccccccccCCCCCCCCCCeee-eeecCCCeEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 003171 144 QLWAG-GENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKE-SVKGVSSVMCMVGDEASGVVWSGHRDGRIMCWKMN 221 (842)
Q Consensus 144 ~l~~~-~D~~vrvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~V~~la~dpdg~~LaSGs~DGtIrlWdl~ 221 (842)
.|+.+ +||.|.++|........ |+ ..|+. ..| .++|..+.+-|....|++++-|.+||.||+.
T Consensus 66 iLavadE~G~i~l~dt~~~~fr~-------------ee-~~lk~~~aH-~nAifDl~wapge~~lVsasGDsT~r~Wdvk 130 (720)
T KOG0321|consen 66 ILAVADEDGGIILFDTKSIVFRL-------------EE-RQLKKPLAH-KNAIFDLKWAPGESLLVSASGDSTIRPWDVK 130 (720)
T ss_pred eEEEecCCCceeeecchhhhcch-------------hh-hhhcccccc-cceeEeeccCCCceeEEEccCCceeeeeeec
Confidence 34444 58999999986432210 11 11222 244 8899999999977889999999999999999
Q ss_pred CCccCCCCCcceeEEecccCCcEEEEEEecCCC--EEEeeCCCcEEEEeCCCccc-eeec---CCCceeeeEEEEeecee
Q 003171 222 ARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD--LWSGSEGGGIKIWPWEAIEK-ALSL---KPEERHTAALIVERSYI 295 (842)
Q Consensus 222 ~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~--L~SgS~DgtIrvWd~~t~~~-~l~~---~~~~~~~~~l~~~~s~~ 295 (842)
++. +.....+.||++.|.++||.|+.. +++|+.||.|.|||+.-... .+.. .....+-.+ .......
T Consensus 131 ~s~------l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~-ptpskp~ 203 (720)
T KOG0321|consen 131 TSR------LVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTA-PTPSKPL 203 (720)
T ss_pred cce------eecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCC-CCCCchh
Confidence 862 122234899999999999999876 67999999999999853210 0000 000000000 0000000
Q ss_pred ecccceeccceeeeecCCEEEEEEcCCCCEEEEeC--CCcEEEEEccCCcEEEEeecCCceEeeeecccCCCcccccceE
Q 003171 296 DLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG--FLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFK 373 (842)
Q Consensus 296 ~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s--~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~ 373 (842)
.-+.+...+....+ ...|+.+++- +...|++++ |++|++||+++.........-+ . ...
T Consensus 204 ~kr~~k~kA~s~ti-~ssvTvv~fk-De~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~-~---------~~~------- 264 (720)
T KOG0321|consen 204 KKRIRKWKAASNTI-FSSVTVVLFK-DESTLASAGAADSTIKVWDLRKNYTAYRQEPRG-S---------DKY------- 264 (720)
T ss_pred hccccccccccCce-eeeeEEEEEe-ccceeeeccCCCcceEEEeecccccccccCCCc-c---------cCc-------
Confidence 00001111111111 2236677775 455666655 6899999998765421111000 0 000
Q ss_pred EEEEecCCCCccceeeeEeecCcceEEecCCcEEEEeecCccccCCCceEEEEECCCC-cEEEEeCCCeEEEEcCCC---
Q 003171 374 TKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDG-MIWTGGANGLLLQWDPNG--- 449 (842)
Q Consensus 374 ~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~al~~s~dg-~l~Sgs~DgtIrlWD~~g--- 449 (842)
-... .....+..|..+.-| +|.+.+.|++|.+|++.+
T Consensus 265 ---~t~s------------------------------------krs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~s~ 305 (720)
T KOG0321|consen 265 ---PTHS------------------------------------KRSVGQVNLILDSSGTYLFASCTDNSIYFYNMRSLSI 305 (720)
T ss_pred ---cCcc------------------------------------cceeeeEEEEecCCCCeEEEEecCCcEEEEeccccCc
Confidence 0000 001112233333334 466566699999999954
Q ss_pred CeeeeeecCCc---cEE-EEEecCCEEEEEecCcEEEEEeCC--CcccccccccccCEEEEEeCC---CEEEEEcCCCCe
Q 003171 450 NRLQDFQYLPF---AVQ-CLCTFGSQIWVGYMNGIVQVLDLE--GNLLGGWVAHSSPVIKMAVGA---GYIFTLANHGGI 520 (842)
Q Consensus 450 ~~l~~l~~H~~---~V~-sls~dG~~LasGs~DgtIrlWD~~--g~~i~~l~gH~~~V~sla~dg---~~l~S~S~DgtI 520 (842)
..+..+.+|.. .|. ++++|+.+|++|+.|....+|.+. ......+.||+-.|+++.+.+ .-+++++.|-++
T Consensus 306 sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~~l~Ght~eVt~V~w~pS~~t~v~TcSdD~~~ 385 (720)
T KOG0321|consen 306 SPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEAPPALLLGHTREVTTVRWLPSATTPVATCSDDFRV 385 (720)
T ss_pred CchhhccCcccceeeeeeecCCCCceEeccCCCcceeeeeecCccCChhhhhCcceEEEEEeeccccCCCceeeccCcce
Confidence 34455555443 233 347899999999999999999987 345788899999999998643 458899999999
Q ss_pred eeccccC
Q 003171 521 RGWNVTS 527 (842)
Q Consensus 521 rvWd~~~ 527 (842)
++|++..
T Consensus 386 kiW~l~~ 392 (720)
T KOG0321|consen 386 KIWRLSN 392 (720)
T ss_pred EEEeccC
Confidence 9999843
|
|
| >TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein | Back alignment and domain information |
|---|
Probab=99.76 E-value=6.8e-16 Score=166.32 Aligned_cols=254 Identities=13% Similarity=0.115 Sum_probs=164.6
Q ss_pred ecCCCEEEEeCCCCccccccccccccCCCCCCCCCCeeeeeecCCCeEEEEEcCCCCEE-EEEeCCCcEEEEECCCCccC
Q 003171 148 GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVV-WSGHRDGRIMCWKMNARLLD 226 (842)
Q Consensus 148 ~~D~~vrvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~V~~la~dpdg~~L-aSGs~DGtIrlWdl~~g~~~ 226 (842)
+.|+.|++||+.+...... + .+...+.+++++|+++.+ ++++.|++|++||..++
T Consensus 8 ~~d~~v~~~d~~t~~~~~~-----------------~----~~~~~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~--- 63 (300)
T TIGR03866 8 EKDNTISVIDTATLEVTRT-----------------F----PVGQRPRGITLSKDGKLLYVCASDSDTIQVIDLATG--- 63 (300)
T ss_pred cCCCEEEEEECCCCceEEE-----------------E----ECCCCCCceEECCCCCEEEEEECCCCeEEEEECCCC---
Confidence 5689999999876432211 1 112346779999999876 57788999999999886
Q ss_pred CCCCcceeEEecccCCcEEEEEEecCCC-EE-EeeCCCcEEEEeCCCccceeecCCCceeeeEEEEeeceeecccceecc
Q 003171 227 SDDGFGEVLSWQAHRGPVLSLCISSYGD-LW-SGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVN 304 (842)
Q Consensus 227 ~~~~~~~~~~l~gH~~~V~slafs~dG~-L~-SgS~DgtIrvWd~~t~~~~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~ 304 (842)
+....+..|.. +..++|+|+|+ ++ +++.|+.|++||+.+......+..
T Consensus 64 -----~~~~~~~~~~~-~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~------------------------ 113 (300)
T TIGR03866 64 -----EVIGTLPSGPD-PELFALHPNGKILYIANEDDNLVTVIDIETRKVLAEIPV------------------------ 113 (300)
T ss_pred -----cEEEeccCCCC-ccEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeC------------------------
Confidence 44555655544 46789999998 54 566799999999965321111100
Q ss_pred ceeeeecCCEEEEEEcCCCCEEEEeCC--CcEEEEEccCCcEEEEeecCCceEeeeecccCCCcccccceEEEEEecCCC
Q 003171 305 GFSSILTSDIKNLLSDHSRAKVWSAGF--LSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKK 382 (842)
Q Consensus 305 ~~~~~~s~~v~~las~~~~~~v~s~s~--~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~ 382 (842)
......++.++++..++.+.. ..+.+||..+++++..+...
T Consensus 114 ------~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~------------------------------- 156 (300)
T TIGR03866 114 ------GVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNVLVD------------------------------- 156 (300)
T ss_pred ------CCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEEEcC-------------------------------
Confidence 011234566677777666553 24667788766543221100
Q ss_pred CccceeeeEeecCcceEEecCCcEEEEeecCccccCCCceEEEEECCCCc-EEEE-eCCCeEEEEcC-CCCeeeeeecCC
Q 003171 383 DKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGM-IWTG-GANGLLLQWDP-NGNRLQDFQYLP 459 (842)
Q Consensus 383 ~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~al~~s~dg~-l~Sg-s~DgtIrlWD~-~g~~l~~l~~H~ 459 (842)
.....++++++|+ ++.+ ..++.|++||+ ++++++.+..+.
T Consensus 157 -------------------------------------~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~ 199 (300)
T TIGR03866 157 -------------------------------------QRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEI 199 (300)
T ss_pred -------------------------------------CCccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecc
Confidence 0112466788887 5444 46899999999 677777665332
Q ss_pred -----ccE--E--EEEecCCEEEEE-ecCcEEEEEeCC-CcccccccccccCEEEEE--eCCCEEEEE-cCCCCeeeccc
Q 003171 460 -----FAV--Q--CLCTFGSQIWVG-YMNGIVQVLDLE-GNLLGGWVAHSSPVIKMA--VGAGYIFTL-ANHGGIRGWNV 525 (842)
Q Consensus 460 -----~~V--~--sls~dG~~LasG-s~DgtIrlWD~~-g~~i~~l~gH~~~V~sla--~dg~~l~S~-S~DgtIrvWd~ 525 (842)
..+ . +++++|++++++ +.+++|.+||++ ++.+..+ .+...+.+++ +++++|+++ +.++.|++||+
T Consensus 200 ~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~~~~~-~~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~ 278 (300)
T TIGR03866 200 PGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTYEVLDYL-LVGQRVWQLAFTPDEKYLLTTNGVSNDVSVIDV 278 (300)
T ss_pred cccccccCCccceEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEE-EeCCCcceEEECCCCCEEEEEcCCCCeEEEEEC
Confidence 111 1 245688876654 456789999987 5555443 3445687877 488888876 56999999998
Q ss_pred cCCCC
Q 003171 526 TSPGP 530 (842)
Q Consensus 526 ~~~~~ 530 (842)
.+..+
T Consensus 279 ~~~~~ 283 (300)
T TIGR03866 279 AALKV 283 (300)
T ss_pred CCCcE
Confidence 76443
|
Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol. |
| >KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.73 E-value=9.1e-16 Score=158.00 Aligned_cols=255 Identities=13% Similarity=0.204 Sum_probs=164.1
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEec--CCC-EEEeeCCCcEEEE
Q 003171 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISS--YGD-LWSGSEGGGIKIW 267 (842)
Q Consensus 191 ~~~V~~la~dpdg~~LaSGs~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~--dG~-L~SgS~DgtIrvW 267 (842)
..-|.|+.||+-|+.+||+|.|++++|||...+ ...+.+..+|+.|.+.|..|.+-+ .|+ ++++|.|+|++||
T Consensus 13 ~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~----s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iW 88 (361)
T KOG2445|consen 13 KDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSD----SGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIW 88 (361)
T ss_pred cceeeeeeecccCceeeeccCCCcEEEEeccCC----CCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeee
Confidence 667999999999999999999999999997654 245677788999999999999864 488 6899999999999
Q ss_pred eCCCccceeecCCCceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcC--CCCEEEEeC-CCcEEEEEccCCcE
Q 003171 268 PWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDH--SRAKVWSAG-FLSFALWDARTREL 344 (842)
Q Consensus 268 d~~t~~~~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~--~~~~v~s~s-~~tI~lWD~~tg~~ 344 (842)
.=.. +....+. ......- ++.+- .+.|..+.+.+ -|-++++++ |+++|||++-.---
T Consensus 89 EE~~--~~~~~~~-~~Wv~~t----tl~Ds-------------rssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~n 148 (361)
T KOG2445|consen 89 EEQE--KSEEAHG-RRWVRRT----TLVDS-------------RSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMN 148 (361)
T ss_pred eecc--ccccccc-ceeEEEE----EeecC-------------CcceeEEEecchhcceEEEEeccCcEEEEEecCCccc
Confidence 7521 1111110 0111100 01111 23455555544 455777766 78899998743211
Q ss_pred EEEeecCCceEeeeecccCCCcccccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEeecCccccCCCceEE
Q 003171 345 LKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEA 424 (842)
Q Consensus 345 l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~a 424 (842)
+...+....+ .... .... .+....-+
T Consensus 149 Ls~W~Lq~Ei------~~~~-------------~pp~-----------------------------------~~~~~~~C 174 (361)
T KOG2445|consen 149 LSQWTLQHEI------QNVI-------------DPPG-----------------------------------KNKQPCFC 174 (361)
T ss_pred cccchhhhhh------hhcc-------------CCcc-----------------------------------cccCcceE
Confidence 1111100000 0000 0000 00001111
Q ss_pred EEECC----CCcEEEEeCC-----CeEEEEcC--CC-C--eeeeeecCCccEEEEEe--c-CC---EEEEEecCcEEEEE
Q 003171 425 LTTSI----DGMIWTGGAN-----GLLLQWDP--NG-N--RLQDFQYLPFAVQCLCT--F-GS---QIWVGYMNGIVQVL 484 (842)
Q Consensus 425 l~~s~----dg~l~Sgs~D-----gtIrlWD~--~g-~--~l~~l~~H~~~V~sls~--d-G~---~LasGs~DgtIrlW 484 (842)
|.+.+ ...|+.|+.+ +.++||.- .+ + .+.++.+|+.+|+.|++ . |+ .||+++.|| |+||
T Consensus 175 vsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kDg-v~I~ 253 (361)
T KOG2445|consen 175 VSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVATKDG-VRIF 253 (361)
T ss_pred EeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceeeEEEeecCc-EEEE
Confidence 22221 1236666654 36888876 34 2 34567799999999864 2 54 899999999 9999
Q ss_pred eCCC---------------------cccccccccccCEEEEEe--CCCEEEEEcCCCCeeecc
Q 003171 485 DLEG---------------------NLLGGWVAHSSPVIKMAV--GAGYIFTLANHGGIRGWN 524 (842)
Q Consensus 485 D~~g---------------------~~i~~l~gH~~~V~sla~--dg~~l~S~S~DgtIrvWd 524 (842)
.++. +.+..+..|.+.|+.+.+ -|..|.|.|.||.||+|.
T Consensus 254 ~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~VRLWk 316 (361)
T KOG2445|consen 254 KVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGDDGCVRLWK 316 (361)
T ss_pred EEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecCCCceeeehh
Confidence 9652 135568899999999996 588999999999999998
|
|
| >KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription] | Back alignment and domain information |
|---|
Probab=99.73 E-value=7.9e-16 Score=180.68 Aligned_cols=296 Identities=18% Similarity=0.151 Sum_probs=194.0
Q ss_pred eeEEEEecCC-EEEE--e--cCCCEEEEeCCCCccccccccccccCCCCCCCCCCeeeeeecCCCeEEEEEcCCCCEEEE
Q 003171 134 FLRTIVCTEE-QLWA--G--GENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWS 208 (842)
Q Consensus 134 ~~~~l~~~~~-~l~~--~--~D~~vrvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~V~~la~dpdg~~LaS 208 (842)
.+.+|..+.+ ..++ | .|+++++|+.+....... .+....+...++..- +.++|.|+.|+|||++||+
T Consensus 15 ~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~-------~~~~~l~k~l~~m~~-h~~sv~CVR~S~dG~~lAs 86 (942)
T KOG0973|consen 15 SIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKE-------EKNENLPKHLCTMDD-HDGSVNCVRFSPDGSYLAS 86 (942)
T ss_pred eEEEEEecCCceeEecCCccccccceeeccccccchhh-------hhhcccchhheeecc-ccCceeEEEECCCCCeEee
Confidence 3667777755 3333 3 589999999865332110 000000111122222 3889999999999999999
Q ss_pred EeCCCcEEEEECCCC----ccCC------CCCcceeEEecccCCcEEEEEEecCCC-EEEeeCCCcEEEEeCCCccceee
Q 003171 209 GHRDGRIMCWKMNAR----LLDS------DDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEKALS 277 (842)
Q Consensus 209 Gs~DGtIrlWdl~~g----~~~~------~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~~t~~~~l~ 277 (842)
||.|+.|.+|..... .+.+ -...+....+.||.+-|..|+++|++. |+|+|.|++|-||+..+.+..-.
T Consensus 87 GSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF~~~~v 166 (942)
T KOG0973|consen 87 GSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTFELLKV 166 (942)
T ss_pred ccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEecccceEEEEccccceeeee
Confidence 999999999998731 1100 113456678899999999999999998 78999999999999876522111
Q ss_pred cCCCceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcCCCCEEEEeC-CCcEEEEEccCCcEEEEeecCCceEe
Q 003171 278 LKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVFNIDGQIEN 356 (842)
Q Consensus 278 ~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s-~~tI~lWD~~tg~~l~~l~~~~~~~~ 356 (842)
+++| .+.|+-+..++-|..+++-+ |++|++|++.+-.+.+....+-+
T Consensus 167 -------------------l~~H----------~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~--- 214 (942)
T KOG0973|consen 167 -------------------LRGH----------QSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFE--- 214 (942)
T ss_pred -------------------eecc----------cccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchh---
Confidence 2233 45677888899998888877 57999999654333332221100
Q ss_pred eeecccCCCcccccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEeecCccccCCCceEEEEECCCCc-EEE
Q 003171 357 RVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGM-IWT 435 (842)
Q Consensus 357 ~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~al~~s~dg~-l~S 435 (842)
.. +. .-...-+.+||||+ |++
T Consensus 215 ----------------------~~--------------------~~----------------~T~f~RlSWSPDG~~las 236 (942)
T KOG0973|consen 215 ----------------------ES--------------------PL----------------TTFFLRLSWSPDGHHLAS 236 (942)
T ss_pred ----------------------hC--------------------CC----------------cceeeecccCCCcCeecc
Confidence 00 00 00012245778877 444
Q ss_pred EeC----CCeEEEEcC-CCCeeeeeecCCccEEEEEec----------C-----C----EEEEEecCcEEEEEeCC-Ccc
Q 003171 436 GGA----NGLLLQWDP-NGNRLQDFQYLPFAVQCLCTF----------G-----S----QIWVGYMNGIVQVLDLE-GNL 490 (842)
Q Consensus 436 gs~----DgtIrlWD~-~g~~l~~l~~H~~~V~sls~d----------G-----~----~LasGs~DgtIrlWD~~-g~~ 490 (842)
... -.++.|.+- +-++-..|.||..++.++.+. | . .+|+|+.|++|-||... -++
T Consensus 237 ~nA~n~~~~~~~IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RP 316 (942)
T KOG0973|consen 237 PNAVNGGKSTIAIIERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRP 316 (942)
T ss_pred hhhccCCcceeEEEecCCceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCCc
Confidence 321 125666666 335667788999998887542 1 1 57899999999999985 343
Q ss_pred c-ccccccccCEEEEEe--CCCEEEEEcCCCCeeeccccC
Q 003171 491 L-GGWVAHSSPVIKMAV--GAGYIFTLANHGGIRGWNVTS 527 (842)
Q Consensus 491 i-~~l~gH~~~V~sla~--dg~~l~S~S~DgtIrvWd~~~ 527 (842)
+ ....--...|..+++ ||-.|+.+|.||+|.+..++.
T Consensus 317 l~vi~~lf~~SI~DmsWspdG~~LfacS~DGtV~~i~Fee 356 (942)
T KOG0973|consen 317 LFVIHNLFNKSIVDMSWSPDGFSLFACSLDGTVALIHFEE 356 (942)
T ss_pred hhhhhhhhcCceeeeeEcCCCCeEEEEecCCeEEEEEcch
Confidence 2 222333567888885 788999999999999998643
|
|
| >KOG2048 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.73 E-value=3.2e-15 Score=167.57 Aligned_cols=279 Identities=16% Similarity=0.234 Sum_probs=206.9
Q ss_pred eeEEEEec--CCEEEEe-cCCCEEEEeCCCCccccccccccccCCCCCCCCCCeeeeeec--CCCeEEEEEcCCCCEEEE
Q 003171 134 FLRTIVCT--EEQLWAG-GENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKG--VSSVMCMVGDEASGVVWS 208 (842)
Q Consensus 134 ~~~~l~~~--~~~l~~~-~D~~vrvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g--~~~V~~la~dpdg~~LaS 208 (842)
.++++|.. .++|.+| +|+.|-+||+....... ..++| .+.|-.++|. +++.|+|
T Consensus 27 ~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~--------------------~vi~g~~drsIE~L~W~-e~~RLFS 85 (691)
T KOG2048|consen 27 EIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLE--------------------PVIHGPEDRSIESLAWA-EGGRLFS 85 (691)
T ss_pred ceEEEEEeccCCceeeeccCCcEEEEccCCCceee--------------------EEEecCCCCceeeEEEc-cCCeEEe
Confidence 47788876 3366665 59999999997543221 11233 6789999999 6788999
Q ss_pred EeCCCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCCC-EEEeeCCCcEEEEeCCCccceeecCCCceeeeE
Q 003171 209 GHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEKALSLKPEERHTAA 287 (842)
Q Consensus 209 Gs~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~~t~~~~l~~~~~~~~~~~ 287 (842)
.+-+|+|--||+.++ +.......-.++|++++.+|.+. ++.|++||.+...+...+. +++..
T Consensus 86 ~g~sg~i~EwDl~~l--------k~~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~--I~~~r------- 148 (691)
T KOG2048|consen 86 SGLSGSITEWDLHTL--------KQKYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDK--ITYKR------- 148 (691)
T ss_pred ecCCceEEEEecccC--------ceeEEecCCCcceeEEEeCCccceEEeecCCceEEEEecCCce--EEEEe-------
Confidence 999999999999997 66666777789999999999887 7789999977766664322 22210
Q ss_pred EEEeeceeecccceeccceeeeecCCEEEEEEcCCCCEEEEeCC-CcEEEEEccCCcEEEEeecCCceEeeeecccCCCc
Q 003171 288 LIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGF-LSFALWDARTRELLKVFNIDGQIENRVDMSLLPDF 366 (842)
Q Consensus 288 l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s~-~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~ 366 (842)
.+- ...+.+.++...+++.+|++|+. +-|++||+.++..+..... +.
T Consensus 149 -----~l~-------------rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~--~~------------ 196 (691)
T KOG2048|consen 149 -----SLM-------------RQKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVKSGQTLHIITM--QL------------ 196 (691)
T ss_pred -----ecc-------------cccceEEEEEecCCccEEEecccCceEEEEEcCCCceEEEeee--cc------------
Confidence 000 01345778888888888998884 5599999998876542111 00
Q ss_pred ccccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEeecCccccCCCceEEEEECCCCcEEEEeCCCeEEEEc
Q 003171 367 AMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGMIWTGGANGLLLQWD 446 (842)
Q Consensus 367 ~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~al~~s~dg~l~Sgs~DgtIrlWD 446 (842)
...++ +..-.|.+|.+-.|++|++|..-|+|++||
T Consensus 197 -----------d~l~k----------------------------------~~~~iVWSv~~Lrd~tI~sgDS~G~V~FWd 231 (691)
T KOG2048|consen 197 -----------DRLSK----------------------------------REPTIVWSVLFLRDSTIASGDSAGTVTFWD 231 (691)
T ss_pred -----------ccccc----------------------------------CCceEEEEEEEeecCcEEEecCCceEEEEc
Confidence 00000 011234567777899999999999999999
Q ss_pred C-CCCeeeeeecCCccEEEEEe--cCCEEEEEecCcEEEEEeCCCc-----ccccccccccCEEEEEeCCCEEEEEcCCC
Q 003171 447 P-NGNRLQDFQYLPFAVQCLCT--FGSQIWVGYMNGIVQVLDLEGN-----LLGGWVAHSSPVIKMAVGAGYIFTLANHG 518 (842)
Q Consensus 447 ~-~g~~l~~l~~H~~~V~sls~--dG~~LasGs~DgtIrlWD~~g~-----~i~~l~gH~~~V~sla~dg~~l~S~S~Dg 518 (842)
. .|.+++.+..|...|.|++. ++.++.+++.|+.|-.+-.+++ ......+|...|.+++.-+..++||+.|.
T Consensus 232 ~~~gTLiqS~~~h~adVl~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~~wv~~~~r~~h~hdvrs~av~~~~l~sgG~d~ 311 (691)
T KOG2048|consen 232 SIFGTLIQSHSCHDADVLALAVADNEDRVFSAGVDPKIIQYSLTTNKSEWVINSRRDLHAHDVRSMAVIENALISGGRDF 311 (691)
T ss_pred ccCcchhhhhhhhhcceeEEEEcCCCCeEEEccCCCceEEEEecCCccceeeeccccCCcccceeeeeecceEEecceee
Confidence 9 79999999999999999976 4679999999999999987643 23445689999999997667999999999
Q ss_pred CeeeccccC
Q 003171 519 GIRGWNVTS 527 (842)
Q Consensus 519 tIrvWd~~~ 527 (842)
++-+=..+.
T Consensus 312 ~l~i~~s~~ 320 (691)
T KOG2048|consen 312 TLAICSSRE 320 (691)
T ss_pred EEEEccccc
Confidence 998766554
|
|
| >KOG2096 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.73 E-value=7.5e-16 Score=158.92 Aligned_cols=286 Identities=18% Similarity=0.153 Sum_probs=168.4
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEecc--cCCcEEEEEEecCCC--EEEeeCCCcEEE
Q 003171 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQA--HRGPVLSLCISSYGD--LWSGSEGGGIKI 266 (842)
Q Consensus 191 ~~~V~~la~dpdg~~LaSGs~DGtIrlWdl~~g~~~~~~~~~~~~~l~g--H~~~V~slafs~dG~--L~SgS~DgtIrv 266 (842)
...|+||+|+.||+.|+|.+.|++||+|++..=. + ++-+.++. ..+--+.|+|+||-+ +++.-...++++
T Consensus 86 ~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~----~--~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g~~l~v 159 (420)
T KOG2096|consen 86 KKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFE----N--KEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGNKLCV 159 (420)
T ss_pred CCceeeeEEcCCCceeEEEeCCceEEEEecchhh----h--hhhhHhhccccCCCceEEEECCCcceEEEEEccCCEEEE
Confidence 7799999999999999999999999999986521 0 01011110 112357889999987 467778889999
Q ss_pred EeCCCccc-eeecCCCceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcCCCCEEEEeC-CCcEEEEEccCCcE
Q 003171 267 WPWEAIEK-ALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTREL 344 (842)
Q Consensus 267 Wd~~t~~~-~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s-~~tI~lWD~~tg~~ 344 (842)
+.+...+. .++++. .+ +| .+ + +.-.+.-++..+-...++..|.+++ +.+|.|||++ |+.
T Consensus 160 yk~~K~~dG~~~~~~--v~----------~D--~~-~---f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~ 220 (420)
T KOG2096|consen 160 YKLVKKTDGSGSHHF--VH----------ID--NL-E---FERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQL 220 (420)
T ss_pred EEeeecccCCCCccc--cc----------cc--cc-c---cchhcccceEEEeecCCceEEEEecCCCcEEEEecC-Cce
Confidence 98743211 111110 00 00 00 0 0000112233344444455566666 5689999999 888
Q ss_pred EEEeecCCceEeeeecccCCCcc----cccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEeecCccccCCC
Q 003171 345 LKVFNIDGQIENRVDMSLLPDFA----MEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNR 420 (842)
Q Consensus 345 l~~l~~~~~~~~~~~~s~~~~~~----~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~ 420 (842)
+.+............+++...+. +-.++++| ... |-.+ |+-..+.|+ -.+.+|..
T Consensus 221 L~~idtnq~~n~~aavSP~GRFia~~gFTpDVkVw--E~~----------f~kd------G~fqev~rv---f~LkGH~s 279 (420)
T KOG2096|consen 221 LQSIDTNQSSNYDAAVSPDGRFIAVSGFTPDVKVW--EPI----------FTKD------GTFQEVKRV---FSLKGHQS 279 (420)
T ss_pred eeeeccccccccceeeCCCCcEEEEecCCCCceEE--EEE----------eccC------cchhhhhhh---heeccchh
Confidence 77653221110111223322211 11111111 000 0000 000001111 12456888
Q ss_pred ceEEEEECCCCc-EEEEeCCCeEEEEcCC-----CC---eeeeee-----cCCccEE-EEEecCCEEEEEecCcEEEEEe
Q 003171 421 RTEALTTSIDGM-IWTGGANGLLLQWDPN-----GN---RLQDFQ-----YLPFAVQ-CLCTFGSQIWVGYMNGIVQVLD 485 (842)
Q Consensus 421 ~v~al~~s~dg~-l~Sgs~DgtIrlWD~~-----g~---~l~~l~-----~H~~~V~-sls~dG~~LasGs~DgtIrlWD 485 (842)
.|.+++||++.+ +++.|.||++|+||.+ ++ .+++.. ....++. +++|.|+.||. +...+|+++.
T Consensus 280 aV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~-s~gs~l~~~~ 358 (420)
T KOG2096|consen 280 AVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEAGQDPKILKEGSAPLHAAGSEPVRLELSPSGDSLAV-SFGSDLKVFA 358 (420)
T ss_pred heeeeeeCCCcceeEEEecCCcEEEeeccceEecCCCchHhhcCCcchhhcCCCceEEEeCCCCcEEEe-ecCCceEEEE
Confidence 999999999987 8999999999999974 22 333331 1233443 67889998887 4567899999
Q ss_pred CC-Ccccccc-cccccCEEEEEe--CCCEEEEEcCCCCeeecc
Q 003171 486 LE-GNLLGGW-VAHSSPVIKMAV--GAGYIFTLANHGGIRGWN 524 (842)
Q Consensus 486 ~~-g~~i~~l-~gH~~~V~sla~--dg~~l~S~S~DgtIrvWd 524 (842)
.+ |+-.-.+ ..|...|.+|++ +|++++|++ |.-+|+..
T Consensus 359 se~g~~~~~~e~~h~~~Is~is~~~~g~~~atcG-dr~vrv~~ 400 (420)
T KOG2096|consen 359 SEDGKDYPELEDIHSTTISSISYSSDGKYIATCG-DRYVRVIR 400 (420)
T ss_pred cccCccchhHHHhhcCceeeEEecCCCcEEeeec-ceeeeeec
Confidence 87 7654444 579999999984 789999987 66777754
|
|
| >KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.5e-16 Score=163.30 Aligned_cols=284 Identities=14% Similarity=0.212 Sum_probs=177.2
Q ss_pred eeEEEEecCC-EEEE--ecCCCEEEEeCCCCccccccccccccCCCCCCCCC-Ceeee--eecCCCeEEEEEcCCCCEEE
Q 003171 134 FLRTIVCTEE-QLWA--GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTA-PFKES--VKGVSSVMCMVGDEASGVVW 207 (842)
Q Consensus 134 ~~~~l~~~~~-~l~~--~~D~~vrvWdl~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~--~~g~~~V~~la~dpdg~~La 207 (842)
..|+-++..+ +|++ +.|..|++.|.+....... ..-.-.|++.+. |.... -| ..+|.+|.|.|...+|+
T Consensus 114 ~cR~aafs~DG~lvATGsaD~SIKildvermlaks~----~~em~~~~~qa~hPvIRTlYDH-~devn~l~FHPre~ILi 188 (430)
T KOG0640|consen 114 PCRAAAFSPDGSLVATGSADASIKILDVERMLAKSK----PKEMISGDTQARHPVIRTLYDH-VDEVNDLDFHPRETILI 188 (430)
T ss_pred ceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcc----hhhhccCCcccCCceEeehhhc-cCcccceeecchhheEE
Confidence 3444555544 6666 5699999999963211000 000112333322 32111 23 77999999999999999
Q ss_pred EEeCCCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCCC-EEEeeCCCcEEEEeCCCccceeecCCCceeee
Q 003171 208 SGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEKALSLKPEERHTA 286 (842)
Q Consensus 208 SGs~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~~t~~~~l~~~~~~~~~~ 286 (842)
||+.|++||++|..... .+.....-.-..+|.+|.|.|.|. |+.|.+--++||+|+++.++-++..+...|
T Consensus 189 S~srD~tvKlFDfsK~s------aKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~QcfvsanPd~qh-- 260 (430)
T KOG0640|consen 189 SGSRDNTVKLFDFSKTS------AKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQH-- 260 (430)
T ss_pred eccCCCeEEEEecccHH------HHHHHHHhhccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecCccccc--
Confidence 99999999999987641 111111112356899999999999 678999999999999886544433333222
Q ss_pred EEEEeeceeecccceeccceeeeecCCEEEEEEcCCCCEEEEeC-CCcEEEEEccCCcEEEEee-cCCc-eEeeeecccC
Q 003171 287 ALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVFN-IDGQ-IENRVDMSLL 363 (842)
Q Consensus 287 ~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s-~~tI~lWD~~tg~~l~~l~-~~~~-~~~~~~~s~~ 363 (842)
+..+.++-.++.+....+++ |+.|+|||-.+++|+.++. .|+. .+.+
T Consensus 261 ------------------------t~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcS------ 310 (430)
T KOG0640|consen 261 ------------------------TGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCS------ 310 (430)
T ss_pred ------------------------ccceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeee------
Confidence 34566677777777777777 6789999999999988874 2322 1111
Q ss_pred CCcccccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEee--cC----ccccC--CC----ceEEEEECC-C
Q 003171 364 PDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAA--KG----GFGDD--NR----RTEALTTSI-D 430 (842)
Q Consensus 364 ~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~--~g----~~~~~--~~----~v~al~~s~-d 430 (842)
..|..+++.++....|.+..+|. .| .+.+. .+ +..++ |.. .
T Consensus 311 -------------------------a~Ftkn~kyiLsSG~DS~vkLWEi~t~R~l~~YtGAg~tgrq~~rtqAv-FNhtE 364 (430)
T KOG0640|consen 311 -------------------------AVFTKNGKYILSSGKDSTVKLWEISTGRMLKEYTGAGTTGRQKHRTQAV-FNHTE 364 (430)
T ss_pred -------------------------EEEccCCeEEeecCCcceeeeeeecCCceEEEEecCCcccchhhhhhhh-hcCcc
Confidence 22333444445555556666664 22 22221 11 11121 221 1
Q ss_pred CcEEEEe-CCCeEEEEcC-CCCeeeee-ecCCccEEEE--EecCCEEEEEecCcEEEEEeC
Q 003171 431 GMIWTGG-ANGLLLQWDP-NGNRLQDF-QYLPFAVQCL--CTFGSQIWVGYMNGIVQVLDL 486 (842)
Q Consensus 431 g~l~Sgs-~DgtIrlWD~-~g~~l~~l-~~H~~~V~sl--s~dG~~LasGs~DgtIrlWD~ 486 (842)
..++.-. ..+.+.-||. ++.++..+ .+|+++|.++ +|.+.-+.+|+.|..+|.|-.
T Consensus 365 dyVl~pDEas~slcsWdaRtadr~~l~slgHn~a~R~i~HSP~~p~FmTcsdD~raRFWyr 425 (430)
T KOG0640|consen 365 DYVLFPDEASNSLCSWDARTADRVALLSLGHNGAVRWIVHSPVEPAFMTCSDDFRARFWYR 425 (430)
T ss_pred ceEEccccccCceeeccccchhhhhhcccCCCCCceEEEeCCCCCceeeecccceeeeeee
Confidence 2222211 2356889999 56544433 3799999998 567888999999999999964
|
|
| >KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.5e-15 Score=156.01 Aligned_cols=257 Identities=16% Similarity=0.230 Sum_probs=164.4
Q ss_pred CCCeEEEEEcC-CCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCCC-EEEeeCCCcEEEEe
Q 003171 191 VSSVMCMVGDE-ASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWP 268 (842)
Q Consensus 191 ~~~V~~la~dp-dg~~LaSGs~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd 268 (842)
...|.+|+||| ...+++.||.||+||+|+++... . -.....+.|.++|.+++|+.||. +++|+-|+.+|+||
T Consensus 27 ~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g-----~-~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wD 100 (347)
T KOG0647|consen 27 EDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSG-----Q-LVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWD 100 (347)
T ss_pred ccchheeEeccccCceEEecccCCceEEEEEecCC-----c-ccchhhhccCCCeEEEEEccCCceEEeeccCCceEEEE
Confidence 45799999999 56778899999999999998721 1 11244567999999999999997 67999999999999
Q ss_pred CCCccceeecCCCceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcCCC--CEEEEeC-CCcEEEEEccCCcEE
Q 003171 269 WEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSR--AKVWSAG-FLSFALWDARTRELL 345 (842)
Q Consensus 269 ~~t~~~~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~--~~v~s~s-~~tI~lWD~~tg~~l 345 (842)
+.+++... .- .| ...++.+..-+.. ..|.+++ |+|||.||.+...++
T Consensus 101 L~S~Q~~~-v~-------------------~H----------d~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv 150 (347)
T KOG0647|consen 101 LASGQVSQ-VA-------------------AH----------DAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPV 150 (347)
T ss_pred ccCCCeee-ee-------------------ec----------ccceeEEEEecCCCcceeEecccccceeecccCCCCee
Confidence 98753211 10 01 2234444432222 3677788 479999999998887
Q ss_pred EEeecCCceEeeeecccCCCcccccceEEEEEecCCCCccceeeeEeecCcceEEecCC-cEEEEeecC---cccc----
Q 003171 346 KVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAAD-AVRRVAAKG---GFGD---- 417 (842)
Q Consensus 346 ~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~-~v~~v~~~g---~~~~---- 417 (842)
.++....... .+..... + +.++.++ ++..++..+ .+..
T Consensus 151 ~t~~LPeRvY---a~Dv~~p--------m-----------------------~vVata~r~i~vynL~n~~te~k~~~Sp 196 (347)
T KOG0647|consen 151 ATLQLPERVY---AADVLYP--------M-----------------------AVVATAERHIAVYNLENPPTEFKRIESP 196 (347)
T ss_pred eeeeccceee---ehhccCc--------e-----------------------eEEEecCCcEEEEEcCCCcchhhhhcCc
Confidence 7765543321 1100000 0 1111111 111111100 0111
Q ss_pred CCCceEEEEECCCCc-EEEEeCCCeEEEEcC-CC--CeeeeeecCC---------ccEEEEEec--CCEEEEEecCcEEE
Q 003171 418 DNRRTEALTTSIDGM-IWTGGANGLLLQWDP-NG--NRLQDFQYLP---------FAVQCLCTF--GSQIWVGYMNGIVQ 482 (842)
Q Consensus 418 ~~~~v~al~~s~dg~-l~Sgs~DgtIrlWD~-~g--~~l~~l~~H~---------~~V~sls~d--G~~LasGs~DgtIr 482 (842)
-...+++|+.-.|+. .+.|+-.|.+-+-.+ .+ +.--+|+.|. .+|++|++. -..|++++.||++.
T Consensus 197 Lk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~ 276 (347)
T KOG0647|consen 197 LKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTFS 276 (347)
T ss_pred ccceeeEEEEEecCCceEeeeecceEEEEecCCCCccCceeEEEeccCCCCCCceEEecceEeecccceEEEecCCceEE
Confidence 112355666545544 588999999988888 44 3334566665 246666764 34888999999999
Q ss_pred EEeCCC-cccccccccccCEEEEEe--CCCEEE-EEcCC
Q 003171 483 VLDLEG-NLLGGWVAHSSPVIKMAV--GAGYIF-TLANH 517 (842)
Q Consensus 483 lWD~~g-~~i~~l~gH~~~V~sla~--dg~~l~-S~S~D 517 (842)
.||-.. .-+.+..-|..+|.+-.+ +|+.++ ..|.|
T Consensus 277 FWDkdar~kLk~s~~~~qpItcc~fn~~G~ifaYA~gYD 315 (347)
T KOG0647|consen 277 FWDKDARTKLKTSETHPQPITCCSFNRNGSIFAYALGYD 315 (347)
T ss_pred EecchhhhhhhccCcCCCccceeEecCCCCEEEEEeecc
Confidence 999763 346777789999998775 666655 56666
|
|
| >KOG0300 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.72 E-value=5.5e-17 Score=166.70 Aligned_cols=259 Identities=14% Similarity=0.151 Sum_probs=173.3
Q ss_pred CEEEEEeCCCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCCC-EEEeeCCCcEEEEeCCCccceeecCCCc
Q 003171 204 GVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEKALSLKPEE 282 (842)
Q Consensus 204 ~~LaSGs~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~~t~~~~l~~~~~~ 282 (842)
..|+|.-+|++++. ...+.+.||++.|+.|+.....- +.|+|.|.|.+||.++++.+..++.+
T Consensus 125 srivssFk~~t~~~--------------~lvre~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~~Y~G-- 188 (481)
T KOG0300|consen 125 SRIVSSFKDGTVKF--------------RLVRELEGHKDGIWHVAADSTQPICGTASADHTARIWSLESGACLATYTG-- 188 (481)
T ss_pred chheeeecCCceeE--------------eehhhhcccccceeeehhhcCCcceeecccccceeEEeeccccceeeecc--
Confidence 45778888888532 44566889999999998876444 56999999999999999877665543
Q ss_pred eeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcCCCCEEEEeC-CCcEEEEEccCCcEEEEeecCCceEeeeecc
Q 003171 283 RHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVFNIDGQIENRVDMS 361 (842)
Q Consensus 283 ~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s-~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s 361 (842)
| .+.|.++.+.+.+..+.+++ |.+..||...-.-. ...
T Consensus 189 -----------------H----------~GSVNsikfh~s~~L~lTaSGD~taHIW~~av~~~-----vP~--------- 227 (481)
T KOG0300|consen 189 -----------------H----------TGSVNSIKFHNSGLLLLTASGDETAHIWKAAVNWE-----VPS--------- 227 (481)
T ss_pred -----------------c----------ccceeeEEeccccceEEEccCCcchHHHHHhhcCc-----CCC---------
Confidence 2 34577788888888877776 67888997532111 000
Q ss_pred cCCC--cccccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEeecCccccCCCceEEEEECCCCc-EEEEeC
Q 003171 362 LLPD--FAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGM-IWTGGA 438 (842)
Q Consensus 362 ~~~~--~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~al~~s~dg~-l~Sgs~ 438 (842)
+++. .+.+++.. -+ ..... +.+ + -....+...|+.. -.|.+|...|.+..+-..|+ ++++|.
T Consensus 228 ~~a~~~hSsEeE~e---~s-De~~~------d~d-~---~~~sD~~tiRvPl-~~ltgH~~vV~a~dWL~gg~Q~vTaSW 292 (481)
T KOG0300|consen 228 NNAPSDHSSEEEEE---HS-DEHNR------DTD-S---SEKSDGHTIRVPL-MRLTGHRAVVSACDWLAGGQQMVTASW 292 (481)
T ss_pred CCCCCCCCchhhhh---cc-ccccc------ccc-c---ccccCCceeeeee-eeeeccccceEehhhhcCcceeeeeec
Confidence 0000 01111110 00 00000 000 0 0000111222221 12455666666655545554 999999
Q ss_pred CCeEEEEcC-CCCeeeeeecCCccEEEEEe--cCCEEEEEecCcEEEEEeCC--CcccccccccccCEEEEEe-CCCEEE
Q 003171 439 NGLLLQWDP-NGNRLQDFQYLPFAVQCLCT--FGSQIWVGYMNGIVQVLDLE--GNLLGGWVAHSSPVIKMAV-GAGYIF 512 (842)
Q Consensus 439 DgtIrlWD~-~g~~l~~l~~H~~~V~sls~--dG~~LasGs~DgtIrlWD~~--g~~i~~l~gH~~~V~sla~-dg~~l~ 512 (842)
|.+..+||+ +|+.++.+.||....+-.+. .-+.+++.+.|.|.||||.. -..+.+|+||++.|+++.+ -+..++
T Consensus 293 DRTAnlwDVEtge~v~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFReaI~sV~VFQGHtdtVTS~vF~~dd~vV 372 (481)
T KOG0300|consen 293 DRTANLWDVETGEVVNILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREAIQSVAVFQGHTDTVTSVVFNTDDRVV 372 (481)
T ss_pred cccceeeeeccCceeccccCcchhccccccCCcceEEEEeccCceeEeccchhhcceeeeecccccceeEEEEecCCcee
Confidence 999999999 79999999999998886654 44577788889999999986 2458899999999999876 567899
Q ss_pred EEcCCCCeeeccccC-CCCCcch
Q 003171 513 TLANHGGIRGWNVTS-PGPLDSI 534 (842)
Q Consensus 513 S~S~DgtIrvWd~~~-~~~~d~~ 534 (842)
|+|.|.+||+||+++ ..|+..+
T Consensus 373 SgSDDrTvKvWdLrNMRsplATI 395 (481)
T KOG0300|consen 373 SGSDDRTVKVWDLRNMRSPLATI 395 (481)
T ss_pred ecCCCceEEEeeeccccCcceee
Confidence 999999999999876 4455544
|
|
| >KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown] | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.2e-16 Score=173.51 Aligned_cols=254 Identities=19% Similarity=0.242 Sum_probs=164.7
Q ss_pred eeEEecccCCcEEEEEEecCCC-EEEeeCCCcEEEEeCCCccceeecCCCceeeeEEEEeeceeecccceeccceeeeec
Q 003171 233 EVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILT 311 (842)
Q Consensus 233 ~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~~t~~~~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s 311 (842)
+..++++|+..|+++++.|.|. |+|||.|.+|+.||++.....+..... + .....
T Consensus 159 hEi~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~---------------l---------~P~E~ 214 (641)
T KOG0772|consen 159 HEIQLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQ---------------L---------QPCET 214 (641)
T ss_pred ceEeccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhc---------------c---------Ccccc
Confidence 3467899999999999999995 999999999999999764322211100 0 00012
Q ss_pred CCEEEEEEcCCCCEEEEeC-CCcEEEEEccCCcEEEEeecCCceEeeeecccCCCcccccceEEEEEecCCCCccceeee
Q 003171 312 SDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFG 390 (842)
Q Consensus 312 ~~v~~las~~~~~~v~s~s-~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~ 390 (842)
..++.+..+..+..+.+.+ ...++|+|-.--+......++.-+. + ..
T Consensus 215 h~i~sl~ys~Tg~~iLvvsg~aqakl~DRdG~~~~e~~KGDQYI~---D-----------------m~------------ 262 (641)
T KOG0772|consen 215 HQINSLQYSVTGDQILVVSGSAQAKLLDRDGFEIVEFSKGDQYIR---D-----------------MY------------ 262 (641)
T ss_pred cccceeeecCCCCeEEEEecCcceeEEccCCceeeeeeccchhhh---h-----------------hh------------
Confidence 3566677776666554443 2356677643323222222211110 0 00
Q ss_pred EeecCcceEEecCCcEEEEeecCccccCCCceEEEEECCCCc--EEEEeCCCeEEEEcCC--CCeeeeeec-----CCcc
Q 003171 391 FFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGM--IWTGGANGLLLQWDPN--GNRLQDFQY-----LPFA 461 (842)
Q Consensus 391 ~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~al~~s~dg~--l~Sgs~DgtIrlWD~~--g~~l~~l~~-----H~~~ 461 (842)
...+|...+.+..+.|+.+ +++++.||++|+||++ .+.++.|+. -.-+
T Consensus 263 -----------------------nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~ 319 (641)
T KOG0772|consen 263 -----------------------NTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVP 319 (641)
T ss_pred -----------------------ccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCcccC
Confidence 0123444555666777654 8999999999999994 344555542 2223
Q ss_pred EEEE--EecCCEEEEEecCcEEEEEeCCCc----cccccccccc--CEEEEEe--CCCEEEEEcCCCCeeeccccCCC-C
Q 003171 462 VQCL--CTFGSQIWVGYMNGIVQVLDLEGN----LLGGWVAHSS--PVIKMAV--GAGYIFTLANHGGIRGWNVTSPG-P 530 (842)
Q Consensus 462 V~sl--s~dG~~LasGs~DgtIrlWD~~g~----~i~~l~gH~~--~V~sla~--dg~~l~S~S~DgtIrvWd~~~~~-~ 530 (842)
|++. .+||+.||+|..||.|++||..+. -...-.+|.. .|+||.+ ||++|+|-|.|+++|+||++.+. |
T Consensus 320 ~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~kkp 399 (641)
T KOG0772|consen 320 VTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQFKKP 399 (641)
T ss_pred ceeeecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCceeeeeccccccc
Confidence 4443 568999999999999999997532 2345568998 8999985 89999999999999999998754 3
Q ss_pred Ccch--hhhhhcccccccccccceeEEEEEEEeCCCCC
Q 003171 531 LDSI--LCKELAGKEFLYTRMENLKILAGTWNVGQGRA 566 (842)
Q Consensus 531 ~d~~--l~~~l~~r~~~y~~~~~~~i~~~twNv~~~~~ 566 (842)
+... +.+.+..-.++|+....+ |+.||=-.++..+
T Consensus 400 L~~~tgL~t~~~~tdc~FSPd~kl-i~TGtS~~~~~~~ 436 (641)
T KOG0772|consen 400 LNVRTGLPTPFPGTDCCFSPDDKL-ILTGTSAPNGMTA 436 (641)
T ss_pred hhhhcCCCccCCCCccccCCCceE-EEecccccCCCCC
Confidence 3322 234455556777777665 6777766665544
|
|
| >KOG1539 consensus WD repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.72 E-value=4e-15 Score=169.72 Aligned_cols=358 Identities=18% Similarity=0.277 Sum_probs=216.3
Q ss_pred EEEecCCCEEEEeCCCCccccccccccccCCCCCCCCCCeeeeeecCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCc
Q 003171 145 LWAGGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARL 224 (842)
Q Consensus 145 l~~~~D~~vrvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~V~~la~dpdg~~LaSGs~DGtIrlWdl~~g~ 224 (842)
+.-+++|.+++||+.+....-. |.+ . .+.|+|+.-+|.-..+|.|..+|+|.+.++..+
T Consensus 176 vvGs~~G~lql~Nvrt~K~v~~-----------------f~~--~-~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~d- 234 (910)
T KOG1539|consen 176 VVGSSQGRLQLWNVRTGKVVYT-----------------FQE--F-FSRITAIEQSPALDVVAIGLENGTVIIFNLKFD- 234 (910)
T ss_pred EEeecCCcEEEEEeccCcEEEE-----------------ecc--c-ccceeEeccCCcceEEEEeccCceEEEEEcccC-
Confidence 3336799999999987554311 221 2 568999999999999999999999999999987
Q ss_pred cCCCCCcceeEEecccCCcEEEEEEecCCC--EEEeeCCCcEEEEeCCCccceeecCCCceeeeEEEEeeceeeccccee
Q 003171 225 LDSDDGFGEVLSWQAHRGPVLSLCISSYGD--LWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLS 302 (842)
Q Consensus 225 ~~~~~~~~~~~~l~gH~~~V~slafs~dG~--L~SgS~DgtIrvWd~~t~~~~l~~~~~~~~~~~l~~~~s~~~l~~~~~ 302 (842)
+.+.+++--.+.|++++|.-||. |++|..-|.+-+||++......... .+|
T Consensus 235 -------kil~sFk~d~g~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~~v~~------------------nah-- 287 (910)
T KOG1539|consen 235 -------KILMSFKQDWGRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLINVTR------------------NAH-- 287 (910)
T ss_pred -------cEEEEEEccccceeEEEeccCCCeeEEeccCCceEEEEEcCCCeeeeeee------------------ccc--
Confidence 67888876579999999999997 7899999999999997633211110 011
Q ss_pred ccceeeeecCCEEEEEEcCCCCEEEEeC-CCcEEEEEccC--C--cEEEEeecCCceEeeeec---------ccCCCc--
Q 003171 303 VNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDART--R--ELLKVFNIDGQIENRVDM---------SLLPDF-- 366 (842)
Q Consensus 303 ~~~~~~~~s~~v~~las~~~~~~v~s~s-~~tI~lWD~~t--g--~~l~~l~~~~~~~~~~~~---------s~~~~~-- 366 (842)
.+.+....+-++...+.+++ |+.+++|=..+ | ..++.=.+|.+.-..+.+ +...+.
T Consensus 288 --------~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~ 359 (910)
T KOG1539|consen 288 --------YGSVTGATFLPGEPVLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTL 359 (910)
T ss_pred --------cCCcccceecCCCceEeeccCCCceeEEEeeCCCCcchheeeccCCCCCchheeeeccCcEEEEecccCcch
Confidence 11111122222233333332 44555443332 2 112221222221100000 111111
Q ss_pred ---cc-----ccce-EEEEEecCCC----------CccceeeeEee-cC---cceEEecCCcE-EEEee-----cCc---
Q 003171 367 ---AM-----EDEF-KTKIVTSSKK----------DKAQSSFGFFQ-RS---RNAIMGAADAV-RRVAA-----KGG--- 414 (842)
Q Consensus 367 ---~~-----~~~~-~~~~~s~~~~----------~~~~~s~~~~~-~~---~~~~~g~~~~v-~~v~~-----~g~--- 414 (842)
++ .++. +.......++ ...+..+++.. +. .++++.|.+.. .+.|. .|.
T Consensus 360 r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L 439 (910)
T KOG1539|consen 360 RSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVL 439 (910)
T ss_pred hhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEe
Confidence 00 0000 0000000000 00000111110 00 13344443321 22222 122
Q ss_pred ----cccCCCceEEEEECCCCc-EEEEeCCCeEEEEcC-CCCeeeee---ecCCccEEEEEecCC--EEEEEecCcEEEE
Q 003171 415 ----FGDDNRRTEALTTSIDGM-IWTGGANGLLLQWDP-NGNRLQDF---QYLPFAVQCLCTFGS--QIWVGYMNGIVQV 483 (842)
Q Consensus 415 ----~~~~~~~v~al~~s~dg~-l~Sgs~DgtIrlWD~-~g~~l~~l---~~H~~~V~sls~dG~--~LasGs~DgtIrl 483 (842)
+......+.+++.++-|. .+.|+..|+|-++++ .|-....| ..|..+|+.++.|+. .+++++.+|.++.
T Consensus 440 ~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkf 519 (910)
T KOG1539|consen 440 DPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKF 519 (910)
T ss_pred cCccccccCcceEEEEEeccCceEEEeccCCeEEEEEcccCeeecccccCccccCceeEEEecCCCceEEEccCcceEEE
Confidence 222346788899999998 567888999999999 68777777 479999999999864 6999999999999
Q ss_pred EeCCCc------------------------------------------ccccccccccCEEEEE--eCCCEEEEEcCCCC
Q 003171 484 LDLEGN------------------------------------------LLGGWVAHSSPVIKMA--VGAGYIFTLANHGG 519 (842)
Q Consensus 484 WD~~g~------------------------------------------~i~~l~gH~~~V~sla--~dg~~l~S~S~Dgt 519 (842)
||.+++ .++.|.||++.|+.+. +||++|+|++-|++
T Consensus 520 w~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrWlisasmD~t 599 (910)
T KOG1539|consen 520 WDFKKKVLKKSLRLGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRWLISASMDST 599 (910)
T ss_pred EecCCcceeeeeccCCCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhhccccceeeeEeCCCCcEEEEeecCCc
Confidence 994321 2356789999999987 59999999999999
Q ss_pred eeeccccCCCCCcchhhhhhcccccccccccceeEEEEEEEeC
Q 003171 520 IRGWNVTSPGPLDSILCKELAGKEFLYTRMENLKILAGTWNVG 562 (842)
Q Consensus 520 IrvWd~~~~~~~d~~l~~~l~~r~~~y~~~~~~~i~~~twNv~ 562 (842)
||+||+.+...+|.+....-.. ...|+++++ |..|-.++
T Consensus 600 Ir~wDlpt~~lID~~~vd~~~~-sls~SPngD---~LAT~Hvd 638 (910)
T KOG1539|consen 600 IRTWDLPTGTLIDGLLVDSPCT-SLSFSPNGD---FLATVHVD 638 (910)
T ss_pred EEEEeccCcceeeeEecCCcce-eeEECCCCC---EEEEEEec
Confidence 9999999988888876543222 223555555 44455554
|
|
| >KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.72 E-value=3.3e-16 Score=175.75 Aligned_cols=221 Identities=21% Similarity=0.276 Sum_probs=162.9
Q ss_pred CCEEEEec-CCCEEEEeCCCCccccccccccccCCCCCCCCCCeeeeeecCCCeEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 003171 142 EEQLWAGG-ENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGHRDGRIMCWKM 220 (842)
Q Consensus 142 ~~~l~~~~-D~~vrvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~V~~la~dpdg~~LaSGs~DGtIrlWdl 220 (842)
+..|.+|. ++.|.|||.++...... +.. .| ..-|.|+++. +..+.+|+.||.|..+|+
T Consensus 229 G~~LavG~~~g~v~iwD~~~~k~~~~-----------------~~~-~h-~~rvg~laW~--~~~lssGsr~~~I~~~dv 287 (484)
T KOG0305|consen 229 GSHLAVGTSDGTVQIWDVKEQKKTRT-----------------LRG-SH-ASRVGSLAWN--SSVLSSGSRDGKILNHDV 287 (484)
T ss_pred CCEEEEeecCCeEEEEehhhcccccc-----------------ccC-Cc-CceeEEEecc--CceEEEecCCCcEEEEEE
Confidence 34555554 78999999876443321 111 13 6679999997 588999999999999999
Q ss_pred CCCccCCCCCcceeEEecccCCcEEEEEEecCCC-EEEeeCCCcEEEEeCCCccceeecCCCceeeeEEEEeeceeeccc
Q 003171 221 NARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRS 299 (842)
Q Consensus 221 ~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~~t~~~~l~~~~~~~~~~~l~~~~s~~~l~~ 299 (842)
.... ....++++|+..|..+.+++|+. |+||+.|+.+.|||....+..+.+..
T Consensus 288 R~~~-------~~~~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~------------------- 341 (484)
T KOG0305|consen 288 RISQ-------HVVSTLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEPKFTFTE------------------- 341 (484)
T ss_pred ecch-------hhhhhhhcccceeeeeEECCCCCeeccCCCccceEeccCCCccccEEEec-------------------
Confidence 8762 12224899999999999999997 89999999999999855443333322
Q ss_pred ceeccceeeeecCCEEEEEEcC-CCCEEEEeC---CCcEEEEEccCCcEEEEeecCCceEeeeecccCCCcccccceEEE
Q 003171 300 HLSVNGFSSILTSDIKNLLSDH-SRAKVWSAG---FLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTK 375 (842)
Q Consensus 300 ~~~~~~~~~~~s~~v~~las~~-~~~~v~s~s---~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~ 375 (842)
| ...|+.++.++ ....|++|+ |++|++||..+|+.+....-..|
T Consensus 342 H----------~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vdtgsQ---------------------- 389 (484)
T KOG0305|consen 342 H----------TAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSVDTGSQ---------------------- 389 (484)
T ss_pred c----------ceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEecccccCCc----------------------
Confidence 1 44577777766 445677765 57899999999987654422222
Q ss_pred EEecCCCCccceeeeEeecCcceEEecCCcEEEEeecCccccCCCceEEEEECCCCc-EEE--EeCCCeEEEEcC-CCCe
Q 003171 376 IVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGM-IWT--GGANGLLLQWDP-NGNR 451 (842)
Q Consensus 376 ~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~al~~s~dg~-l~S--gs~DgtIrlWD~-~g~~ 451 (842)
|..|.+++... |++ |..++.|.||+. +-+.
T Consensus 390 ----------------------------------------------VcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~ 423 (484)
T KOG0305|consen 390 ----------------------------------------------VCSLIWSKKYKELLSTHGYSENQITLWKYPSMKL 423 (484)
T ss_pred ----------------------------------------------eeeEEEcCCCCEEEEecCCCCCcEEEEeccccce
Confidence 23344444442 443 335678999999 7789
Q ss_pred eeeeecCCccEEEE--EecCCEEEEEecCcEEEEEeCC
Q 003171 452 LQDFQYLPFAVQCL--CTFGSQIWVGYMNGIVQVLDLE 487 (842)
Q Consensus 452 l~~l~~H~~~V~sl--s~dG~~LasGs~DgtIrlWD~~ 487 (842)
+..+.+|+.+|..+ ++||+.|++|+.|.|+++|++=
T Consensus 424 ~~~l~gH~~RVl~la~SPdg~~i~t~a~DETlrfw~~f 461 (484)
T KOG0305|consen 424 VAELLGHTSRVLYLALSPDGETIVTGAADETLRFWNLF 461 (484)
T ss_pred eeeecCCcceeEEEEECCCCCEEEEecccCcEEecccc
Confidence 99999999999987 5799999999999999999974
|
|
| >KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.72 E-value=5.2e-15 Score=153.53 Aligned_cols=269 Identities=14% Similarity=0.125 Sum_probs=177.4
Q ss_pred CceeEEEEec--CCEEEE-ecCCCEEEEeCCCCccccccccccccCCCCCCCCCCeeeeeecCCCeEEEEEcCCCCEEEE
Q 003171 132 GCFLRTIVCT--EEQLWA-GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWS 208 (842)
Q Consensus 132 ~~~~~~l~~~--~~~l~~-~~D~~vrvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~V~~la~dpdg~~LaS 208 (842)
+..+.+|..+ +..|.+ ++|.+|++||..++..... + .+- .-.|-++.|-.....+..
T Consensus 14 ~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~t-i-----------------~sk--kyG~~~~~Fth~~~~~i~ 73 (311)
T KOG1446|consen 14 NGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKT-I-----------------NSK--KYGVDLACFTHHSNTVIH 73 (311)
T ss_pred CCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeE-e-----------------ecc--cccccEEEEecCCceEEE
Confidence 3466677776 335555 4577999999987654321 0 000 112334444334445555
Q ss_pred EeC--CCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCCC-EEEeeCCCcEEEEeCCCccceeecCCCceee
Q 003171 209 GHR--DGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEKALSLKPEERHT 285 (842)
Q Consensus 209 Gs~--DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~~t~~~~l~~~~~~~~~ 285 (842)
+|. |.+||.-++.+. +.++-|.||...|++|..+|-+. ++|+|.|++||+||+....++..+..
T Consensus 74 sStk~d~tIryLsl~dN--------kylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~----- 140 (311)
T KOG1446|consen 74 SSTKEDDTIRYLSLHDN--------KYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNL----- 140 (311)
T ss_pred ccCCCCCceEEEEeecC--------ceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEec-----
Confidence 555 889999999986 78899999999999999999776 78999999999999975433221111
Q ss_pred eEEEEeeceeecccceeccceeeeecCCEEEEEEcCCCCEEEEeCCC-cEEEEEccCC--cEEEEeecCCceEeeeeccc
Q 003171 286 AALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGFL-SFALWDARTR--ELLKVFNIDGQIENRVDMSL 362 (842)
Q Consensus 286 ~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s~~-tI~lWD~~tg--~~l~~l~~~~~~~~~~~~s~ 362 (842)
..--+.|+++.|-.++.+... .|+|+|++.- .+-.+|....
T Consensus 141 --------------------------~~~pi~AfDp~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~---------- 184 (311)
T KOG1446|consen 141 --------------------------SGRPIAAFDPEGLIFALANGSELIKLYDLRSFDKGPFTTFSITD---------- 184 (311)
T ss_pred --------------------------CCCcceeECCCCcEEEEecCCCeEEEEEecccCCCCceeEccCC----------
Confidence 011134567777666666543 8999998752 1222221110
Q ss_pred CCCcccccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEE-ee-cCc----cccCC--Cc-eEEEEECCCCc-
Q 003171 363 LPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRV-AA-KGG----FGDDN--RR-TEALTTSIDGM- 432 (842)
Q Consensus 363 ~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v-~~-~g~----~~~~~--~~-v~al~~s~dg~- 432 (842)
. .......+.|+++++..++.+..+...+ .. +|+ |..+. .. .....|+||++
T Consensus 185 ------~------------~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~ftPds~F 246 (311)
T KOG1446|consen 185 ------N------------DEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLPLSATFTPDSKF 246 (311)
T ss_pred ------C------------CccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCcceeEEECCCCcE
Confidence 0 0111123567777777777776654333 32 343 22222 11 23456999999
Q ss_pred EEEEeCCCeEEEEcC-CCCeeeeeec-CCccEEEEEecCCEEEEEecCcEEEEEeCC
Q 003171 433 IWTGGANGLLLQWDP-NGNRLQDFQY-LPFAVQCLCTFGSQIWVGYMNGIVQVLDLE 487 (842)
Q Consensus 433 l~Sgs~DgtIrlWD~-~g~~l~~l~~-H~~~V~sls~dG~~LasGs~DgtIrlWD~~ 487 (842)
+++|+.||+|.+|++ +|+.+..+.+ +..++.|+.+..++....+.+..+-.|=.+
T Consensus 247 vl~gs~dg~i~vw~~~tg~~v~~~~~~~~~~~~~~~fnP~~~mf~sa~s~l~fw~p~ 303 (311)
T KOG1446|consen 247 VLSGSDDGTIHVWNLETGKKVAVLRGPNGGPVSCVRFNPRYAMFVSASSNLVFWLPD 303 (311)
T ss_pred EEEecCCCcEEEEEcCCCcEeeEecCCCCCCccccccCCceeeeeecCceEEEEecc
Confidence 788889999999999 7999988888 788999999888877777788889999654
|
|
| >KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown] | Back alignment and domain information |
|---|
Probab=99.71 E-value=7.2e-16 Score=167.48 Aligned_cols=291 Identities=13% Similarity=0.183 Sum_probs=187.6
Q ss_pred ceeEEEEec--CCEEEEec-CCCEEEEeCCCCccccccccccccCCCCCCCCCCeeeeeecCCCeEEEEEcCCCCEEEEE
Q 003171 133 CFLRTIVCT--EEQLWAGG-ENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSG 209 (842)
Q Consensus 133 ~~~~~l~~~--~~~l~~~~-D~~vrvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~V~~la~dpdg~~LaSG 209 (842)
+.+.+|+.+ +-+|+.|+ |.+|++||++...... |. .....|. . +..|.++.+++.|.+|...
T Consensus 168 k~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~---------~~-fr~l~P~----E-~h~i~sl~ys~Tg~~iLvv 232 (641)
T KOG0772|consen 168 KIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASM---------RS-FRQLQPC----E-THQINSLQYSVTGDQILVV 232 (641)
T ss_pred eEEEEeeecCCCceeeeccccceEEEEecccccccc---------hh-hhccCcc----c-ccccceeeecCCCCeEEEE
Confidence 356677776 44888865 9999999997543211 11 1111221 1 4589999999999998888
Q ss_pred eCCCcEEEEECCCCcc----CCCCCcceeEEecccCCcEEEEEEecCCC--EEEeeCCCcEEEEeCCCccceeecCCCce
Q 003171 210 HRDGRIMCWKMNARLL----DSDDGFGEVLSWQAHRGPVLSLCISSYGD--LWSGSEGGGIKIWPWEAIEKALSLKPEER 283 (842)
Q Consensus 210 s~DGtIrlWdl~~g~~----~~~~~~~~~~~l~gH~~~V~slafs~dG~--L~SgS~DgtIrvWd~~t~~~~l~~~~~~~ 283 (842)
+..-.+||.|-++-.. -.+....-....+||...+++.+|.|+.+ ++|+|.|||+|+||+..-+..+...
T Consensus 233 sg~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVi---- 308 (641)
T KOG0772|consen 233 SGSAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVI---- 308 (641)
T ss_pred ecCcceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEE----
Confidence 8888899998765310 00011111223479999999999999875 8899999999999997643322211
Q ss_pred eeeEEEEeeceeecccceeccceeeeecCCEEEEEEcCCCCEEEEe-CCCcEEEEEccCCcEEEEeecCCceEeeeeccc
Q 003171 284 HTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSA-GFLSFALWDARTRELLKVFNIDGQIENRVDMSL 362 (842)
Q Consensus 284 ~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~-s~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~ 362 (842)
-.+.. ++- --.+..-+.++++..|+.+ .|+.|.+||...... +..
T Consensus 309 ------------k~k~~---~g~----Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v------~p~--------- 354 (641)
T KOG0772|consen 309 ------------KTKPA---GGK----RVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTV------RPV--------- 354 (641)
T ss_pred ------------eeccC---CCc----ccCceeeecCCCcchhhhcccCCceeeeecCCccc------ccc---------
Confidence 00000 110 0123334456666665554 378999999733211 000
Q ss_pred CCCcccccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEeecCccccCCCceEEEEECCCCc-EEEEeCCCe
Q 003171 363 LPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGM-IWTGGANGL 441 (842)
Q Consensus 363 ~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~al~~s~dg~-l~Sgs~Dgt 441 (842)
++ +... | .....|.+|+||+||+ |+|-+.|++
T Consensus 355 ---------~~---vk~A---------------------H--------------~~g~~Itsi~FS~dg~~LlSRg~D~t 387 (641)
T KOG0772|consen 355 ---------MK---VKDA---------------------H--------------LPGQDITSISFSYDGNYLLSRGFDDT 387 (641)
T ss_pred ---------eE---eeec---------------------c--------------CCCCceeEEEeccccchhhhccCCCc
Confidence 00 0000 0 0123578899999998 899999999
Q ss_pred EEEEcC-C-CCeeeeeecCC----ccEEEEEecCCEEEEEec------CcEEEEEeCCC-cccccccccccCEEEEEeCC
Q 003171 442 LLQWDP-N-GNRLQDFQYLP----FAVQCLCTFGSQIWVGYM------NGIVQVLDLEG-NLLGGWVAHSSPVIKMAVGA 508 (842)
Q Consensus 442 IrlWD~-~-g~~l~~l~~H~----~~V~sls~dG~~LasGs~------DgtIrlWD~~g-~~i~~l~gH~~~V~sla~dg 508 (842)
+|+||+ + .+++.+..+-. ..=.|++|+.+.|++|++ .|++.++|... ..++.+.-.+..|..+.+++
T Consensus 388 LKvWDLrq~kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~~aSvv~~~Whp 467 (641)
T KOG0772|consen 388 LKVWDLRQFKKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDISTASVVRCLWHP 467 (641)
T ss_pred eeeeeccccccchhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeEEEecCCCceEEEEeecc
Confidence 999999 3 47777665422 223467889999999874 47899999753 34555444466677777776
Q ss_pred C--EEEEEcCCCCeeec
Q 003171 509 G--YIFTLANHGGIRGW 523 (842)
Q Consensus 509 ~--~l~S~S~DgtIrvW 523 (842)
+ +|+.++.||+++++
T Consensus 468 kLNQi~~gsgdG~~~vy 484 (641)
T KOG0772|consen 468 KLNQIFAGSGDGTAHVY 484 (641)
T ss_pred hhhheeeecCCCceEEE
Confidence 5 58889999999986
|
|
| >KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.71 E-value=2.8e-16 Score=169.85 Aligned_cols=267 Identities=16% Similarity=0.230 Sum_probs=163.7
Q ss_pred EEEecCCEEEEecCCCEEEEeCCCCccccccccccccCCCCCCCCCCee--eeeecCCCeEEEEEcCCCCEEEEEeCCCc
Q 003171 137 TIVCTEEQLWAGGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFK--ESVKGVSSVMCMVGDEASGVVWSGHRDGR 214 (842)
Q Consensus 137 ~l~~~~~~l~~~~D~~vrvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~g~~~V~~la~dpdg~~LaSGs~DGt 214 (842)
+|....+.+|.+.-++|+|||+..... ..|.. .-+...+-+.++...|||+.|.+|+.-.+
T Consensus 426 tIS~~trhVyTgGkgcVKVWdis~pg~-----------------k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGeast 488 (705)
T KOG0639|consen 426 TISNPTRHVYTGGKGCVKVWDISQPGN-----------------KSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEAST 488 (705)
T ss_pred EecCCcceeEecCCCeEEEeeccCCCC-----------------CCccccccccCcccceeeeEecCCCceEEeccccce
Confidence 333346689999999999999964311 11110 01111567888999999999999999999
Q ss_pred EEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCCCE-EEeeCCCcEEEEeCCCccceeecCCCceeeeEEEEeec
Q 003171 215 IMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGDL-WSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERS 293 (842)
Q Consensus 215 IrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~L-~SgS~DgtIrvWd~~t~~~~l~~~~~~~~~~~l~~~~s 293 (842)
+-|||+.... .+.+. .+..-.-+-.+++.+||.++ +++..||.|+|||+......
T Consensus 489 lsiWDLAapT----prika--eltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~~V------------------ 544 (705)
T KOG0639|consen 489 LSIWDLAAPT----PRIKA--ELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLV------------------ 544 (705)
T ss_pred eeeeeccCCC----cchhh--hcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccceee------------------
Confidence 9999998852 11111 12222235678899999995 68999999999999663221
Q ss_pred eeecccceeccceeeeecCCEEEEEEcCCCCEEEEeC-CCcEEEEEccCCcEEEEeecCCceEeeeecccCCCcccccce
Q 003171 294 YIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEF 372 (842)
Q Consensus 294 ~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s-~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~ 372 (842)
.++.|| ...+.|+..+++|.++|+++ |.++|-||++++..+....-..|+
T Consensus 545 -rqfqGh----------tDGascIdis~dGtklWTGGlDntvRcWDlregrqlqqhdF~SQI------------------ 595 (705)
T KOG0639|consen 545 -RQFQGH----------TDGASCIDISKDGTKLWTGGLDNTVRCWDLREGRQLQQHDFSSQI------------------ 595 (705)
T ss_pred -ecccCC----------CCCceeEEecCCCceeecCCCccceeehhhhhhhhhhhhhhhhhh------------------
Confidence 123333 44567888889999999999 789999999988654322111111
Q ss_pred EEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEeecCccccCCCceEEEEECCCCc-EEEEeCCCeEEEEcCCCCe
Q 003171 373 KTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGM-IWTGGANGLLLQWDPNGNR 451 (842)
Q Consensus 373 ~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~al~~s~dg~-l~Sgs~DgtIrlWD~~g~~ 451 (842)
-+|-..|.+. ++.|=.++.+.+-..++..
T Consensus 596 --------------------------------------------------fSLg~cP~~dWlavGMens~vevlh~skp~ 625 (705)
T KOG0639|consen 596 --------------------------------------------------FSLGYCPTGDWLAVGMENSNVEVLHTSKPE 625 (705)
T ss_pred --------------------------------------------------eecccCCCccceeeecccCcEEEEecCCcc
Confidence 1112223333 4455555555555555544
Q ss_pred eeeeecCCccEEEEEe--cCCEEEEEecCcEEEEEeCC-CcccccccccccCEEE--EEeCCCEEEEEcCCCCeeecc
Q 003171 452 LQDFQYLPFAVQCLCT--FGSQIWVGYMNGIVQVLDLE-GNLLGGWVAHSSPVIK--MAVGAGYIFTLANHGGIRGWN 524 (842)
Q Consensus 452 l~~l~~H~~~V~sls~--dG~~LasGs~DgtIrlWD~~-g~~i~~l~gH~~~V~s--la~dg~~l~S~S~DgtIrvWd 524 (842)
...+..|.+-|.++.+ .|+++++.+.|.-+..|..- |.-+-..+. .+.|++ |..|.++++|||.|+...++.
T Consensus 626 kyqlhlheScVLSlKFa~cGkwfvStGkDnlLnawrtPyGasiFqskE-~SsVlsCDIS~ddkyIVTGSGdkkATVYe 702 (705)
T KOG0639|consen 626 KYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKE-SSSVLSCDISFDDKYIVTGSGDKKATVYE 702 (705)
T ss_pred ceeecccccEEEEEEecccCceeeecCchhhhhhccCccccceeeccc-cCcceeeeeccCceEEEecCCCcceEEEE
Confidence 4445556666666543 46666666666666666653 433322222 233443 345666666666666555543
|
|
| >KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.71 E-value=2.1e-17 Score=185.55 Aligned_cols=220 Identities=21% Similarity=0.322 Sum_probs=165.1
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCCC-EEEeeCCCcEEEEeC
Q 003171 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPW 269 (842)
Q Consensus 191 ~~~V~~la~dpdg~~LaSGs~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~ 269 (842)
...|.|+..-..++.+++|+.|-.+-+|..... ..+..|.||..+|.||.|+++-. |++|+.||+||+||+
T Consensus 28 saav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp--------~~i~S~~~hespIeSl~f~~~E~LlaagsasgtiK~wDl 99 (825)
T KOG0267|consen 28 SAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKP--------NAITSLTGHESPIESLTFDTSERLLAAGSASGTIKVWDL 99 (825)
T ss_pred hhhhceeeeeccceeeccCCCceeeccccccCC--------chhheeeccCCcceeeecCcchhhhcccccCCceeeeeh
Confidence 446677766556789999999999999998775 45677999999999999999766 679999999999999
Q ss_pred CCccceeecCCCceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcCCCCEEEEeC-CCcEEEEEccCCcEEEEe
Q 003171 270 EAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVF 348 (842)
Q Consensus 270 ~t~~~~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s-~~tI~lWD~~tg~~l~~l 348 (842)
+..+..-++. +| ..++..+.+.+-+...++++ +..+++||.+..-|...+
T Consensus 100 eeAk~vrtLt-------------------gh----------~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~ 150 (825)
T KOG0267|consen 100 EEAKIVRTLT-------------------GH----------LLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHTY 150 (825)
T ss_pred hhhhhhhhhh-------------------cc----------ccCcceeeeccceEEeccccccccceehhhhccCceeee
Confidence 7543111111 11 22344555666665555554 456899998765554444
Q ss_pred ecCCceEeeeecccCCCcccccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEeecCccccCCCceEEEEEC
Q 003171 349 NIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTS 428 (842)
Q Consensus 349 ~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~al~~s 428 (842)
.+ |...|..+.|+
T Consensus 151 ~s-------------------------------------------------------------------~~~vv~~l~ls 163 (825)
T KOG0267|consen 151 KS-------------------------------------------------------------------HTRVVDVLRLS 163 (825)
T ss_pred cC-------------------------------------------------------------------CcceeEEEeec
Confidence 32 33345567899
Q ss_pred CCCc-EEEEeCCCeEEEEcC-CCCeeeeeecCCccEEEEEecC--CEEEEEecCcEEEEEeCCC-cccccccccccCEEE
Q 003171 429 IDGM-IWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQCLCTFG--SQIWVGYMNGIVQVLDLEG-NLLGGWVAHSSPVIK 503 (842)
Q Consensus 429 ~dg~-l~Sgs~DgtIrlWD~-~g~~l~~l~~H~~~V~sls~dG--~~LasGs~DgtIrlWD~~g-~~i~~l~gH~~~V~s 503 (842)
|+|+ +++|+.|.++++||+ .|+.+.+|..|.+.|.++.++. -.+++|+.|++|++||++. ..+.....-...|.+
T Consensus 164 P~Gr~v~~g~ed~tvki~d~~agk~~~ef~~~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dletfe~I~s~~~~~~~v~~ 243 (825)
T KOG0267|consen 164 PDGRWVASGGEDNTVKIWDLTAGKLSKEFKSHEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLETFEVISSGKPETDGVRS 243 (825)
T ss_pred CCCceeeccCCcceeeeecccccccccccccccccccccccCchhhhhccCCCCceeeeeccceeEEeeccCCccCCcee
Confidence 9997 789999999999999 7999999999999999987653 3888999999999999984 556666666888998
Q ss_pred EEe--CCCEEEEE
Q 003171 504 MAV--GAGYIFTL 514 (842)
Q Consensus 504 la~--dg~~l~S~ 514 (842)
+++ ++..+++|
T Consensus 244 ~~fn~~~~~~~~G 256 (825)
T KOG0267|consen 244 LAFNPDGKIVLSG 256 (825)
T ss_pred eeecCCceeeecC
Confidence 886 45555544
|
|
| >KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.70 E-value=2.2e-16 Score=170.55 Aligned_cols=235 Identities=19% Similarity=0.308 Sum_probs=172.5
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCCC-EEEeeCCCcEEEEeC
Q 003171 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPW 269 (842)
Q Consensus 191 ~~~V~~la~dpdg~~LaSGs~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~ 269 (842)
..-|.+++++...+.++||++ |.|||||+.... ...+...+- ...-.+.|.++.+.|||+ |++|++-.++-|||+
T Consensus 419 GEvVcAvtIS~~trhVyTgGk-gcVKVWdis~pg--~k~PvsqLd-cl~rdnyiRSckL~pdgrtLivGGeastlsiWDL 494 (705)
T KOG0639|consen 419 GEVVCAVTISNPTRHVYTGGK-GCVKVWDISQPG--NKSPVSQLD-CLNRDNYIRSCKLLPDGRTLIVGGEASTLSIWDL 494 (705)
T ss_pred CcEEEEEEecCCcceeEecCC-CeEEEeeccCCC--CCCcccccc-ccCcccceeeeEecCCCceEEeccccceeeeeec
Confidence 456777889988999999987 789999997641 111111111 122357899999999998 999999999999999
Q ss_pred CCccceeecCCCceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcCCCCE-EEEeCCCcEEEEEccCCcEEEEe
Q 003171 270 EAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAK-VWSAGFLSFALWDARTRELLKVF 348 (842)
Q Consensus 270 ~t~~~~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~-v~s~s~~tI~lWD~~tg~~l~~l 348 (842)
..-...+.... +.. ......|+.+++... +.|++|+.|.|||+++..+++.|
T Consensus 495 AapTprikael---------------------tss------apaCyALa~spDakvcFsccsdGnI~vwDLhnq~~Vrqf 547 (705)
T KOG0639|consen 495 AAPTPRIKAEL---------------------TSS------APACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQF 547 (705)
T ss_pred cCCCcchhhhc---------------------CCc------chhhhhhhcCCccceeeeeccCCcEEEEEcccceeeecc
Confidence 76433222111 000 012233455554443 34567899999999876665554
Q ss_pred ecCCceEeeeecccCCCcccccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEeecCccccCCCceEEEEEC
Q 003171 349 NIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTS 428 (842)
Q Consensus 349 ~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~al~~s 428 (842)
.+ |...+.++.++
T Consensus 548 qG-------------------------------------------------------------------htDGascIdis 560 (705)
T KOG0639|consen 548 QG-------------------------------------------------------------------HTDGASCIDIS 560 (705)
T ss_pred cC-------------------------------------------------------------------CCCCceeEEec
Confidence 43 33334567788
Q ss_pred CCCc-EEEEeCCCeEEEEcC-CCCeeeeeecCCccEEEE--EecCCEEEEEecCcEEEEEeCCCcccccccccccCEEEE
Q 003171 429 IDGM-IWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQCL--CTFGSQIWVGYMNGIVQVLDLEGNLLGGWVAHSSPVIKM 504 (842)
Q Consensus 429 ~dg~-l~Sgs~DgtIrlWD~-~g~~l~~l~~H~~~V~sl--s~dG~~LasGs~DgtIrlWD~~g~~i~~l~gH~~~V~sl 504 (842)
+||+ ||+|+-|++||.||+ +|+.++... -++.|.++ ++.|.+|++|=..+.+.|....+..-..+..|.+-|.+|
T Consensus 561 ~dGtklWTGGlDntvRcWDlregrqlqqhd-F~SQIfSLg~cP~~dWlavGMens~vevlh~skp~kyqlhlheScVLSl 639 (705)
T KOG0639|consen 561 KDGTKLWTGGLDNTVRCWDLREGRQLQQHD-FSSQIFSLGYCPTGDWLAVGMENSNVEVLHTSKPEKYQLHLHESCVLSL 639 (705)
T ss_pred CCCceeecCCCccceeehhhhhhhhhhhhh-hhhhheecccCCCccceeeecccCcEEEEecCCccceeecccccEEEEE
Confidence 8997 999999999999999 787665432 24568887 678999999999999999998877777788999999998
Q ss_pred Ee--CCCEEEEEcCCCCeeecc
Q 003171 505 AV--GAGYIFTLANHGGIRGWN 524 (842)
Q Consensus 505 a~--dg~~l~S~S~DgtIrvWd 524 (842)
.+ .|++.+|.+.|+-+-.|.
T Consensus 640 KFa~cGkwfvStGkDnlLnawr 661 (705)
T KOG0639|consen 640 KFAYCGKWFVSTGKDNLLNAWR 661 (705)
T ss_pred EecccCceeeecCchhhhhhcc
Confidence 74 899999999999999998
|
|
| >KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.69 E-value=8.5e-15 Score=151.24 Aligned_cols=251 Identities=14% Similarity=0.178 Sum_probs=153.2
Q ss_pred eEEEEec--CCEEE-EecCCCEEEEeCCCCccccccccccccCCCCCCCCCCeeeeeecCCCeEEEEEcCCCCEEEEEeC
Q 003171 135 LRTIVCT--EEQLW-AGGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGHR 211 (842)
Q Consensus 135 ~~~l~~~--~~~l~-~~~D~~vrvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~V~~la~dpdg~~LaSGs~ 211 (842)
|..+.+. .+.|+ ++-|+++|+||........ .| .+ ..|+++++|-+ -..+++|+-
T Consensus 16 IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~-----------------~~---~~-~~plL~c~F~d-~~~~~~G~~ 73 (323)
T KOG1036|consen 16 ISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKL-----------------KF---KH-GAPLLDCAFAD-ESTIVTGGL 73 (323)
T ss_pred eeeEEEcCcCCcEEEEeccCcEEEEeccchhhhh-----------------he---ec-CCceeeeeccC-CceEEEecc
Confidence 4444444 33444 4669999999986532111 12 22 77999999985 578999999
Q ss_pred CCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecC-CCEEEeeCCCcEEEEeCCCccceeecCCCceeeeEEEE
Q 003171 212 DGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSY-GDLWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIV 290 (842)
Q Consensus 212 DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~d-G~L~SgS~DgtIrvWd~~t~~~~l~~~~~~~~~~~l~~ 290 (842)
||.||..|++++ ....+..|..+|++|.+++. |.++|||+|++||+||.........+..
T Consensus 74 dg~vr~~Dln~~---------~~~~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d~---------- 134 (323)
T KOG1036|consen 74 DGQVRRYDLNTG---------NEDQIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFDQ---------- 134 (323)
T ss_pred CceEEEEEecCC---------cceeeccCCCceEEEEeeccCCeEEEcccCccEEEEecccccccccccc----------
Confidence 999999999996 34566789999999999974 5589999999999999854111111100
Q ss_pred eeceeecccceeccceeeeecCCEEEEEEcCCCCEEEE-eCCCcEEEEEccCCcEEEEeecCCceEeeeecccCCCcccc
Q 003171 291 ERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWS-AGFLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAME 369 (842)
Q Consensus 291 ~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s-~s~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~~~~ 369 (842)
...|.++.. .+.+|.. +.+..+.+||+++-..-..-. ..+. ..
T Consensus 135 --------------------~kkVy~~~v--~g~~LvVg~~~r~v~iyDLRn~~~~~q~r-eS~l----ky--------- 178 (323)
T KOG1036|consen 135 --------------------GKKVYCMDV--SGNRLVVGTSDRKVLIYDLRNLDEPFQRR-ESSL----KY--------- 178 (323)
T ss_pred --------------------CceEEEEec--cCCEEEEeecCceEEEEEcccccchhhhc-cccc----ee---------
Confidence 112333333 3444444 557889999998743210000 0000 00
Q ss_pred cceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEee---c-----C--ccc---------cCCCceEEEEECCC
Q 003171 370 DEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAA---K-----G--GFG---------DDNRRTEALTTSID 430 (842)
Q Consensus 370 ~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~---~-----g--~~~---------~~~~~v~al~~s~d 430 (842)
...++.+.|+...-..++-+|-..+.. . - .|. .....|.+++|+|-
T Consensus 179 ---------------qtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~ 243 (323)
T KOG1036|consen 179 ---------------QTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPI 243 (323)
T ss_pred ---------------EEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEeccc
Confidence 000112222111111222222111110 0 0 010 12246788999885
Q ss_pred -CcEEEEeCCCeEEEEcC-CCCeeeeeecCCccEEEEEe--cCCEEEEEec
Q 003171 431 -GMIWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQCLCT--FGSQIWVGYM 477 (842)
Q Consensus 431 -g~l~Sgs~DgtIrlWD~-~g~~l~~l~~H~~~V~sls~--dG~~LasGs~ 477 (842)
|+++||+.||.|-+||+ +.+.+..|......|-++++ +|..||+|+.
T Consensus 244 ~~tfaTgGsDG~V~~Wd~~~rKrl~q~~~~~~SI~slsfs~dG~~LAia~s 294 (323)
T KOG1036|consen 244 HGTFATGGSDGIVNIWDLFNRKRLKQLAKYETSISSLSFSMDGSLLAIASS 294 (323)
T ss_pred cceEEecCCCceEEEccCcchhhhhhccCCCCceEEEEeccCCCeEEEEec
Confidence 66999999999999999 67888888776667777765 7999998874
|
|
| >KOG2096 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.68 E-value=9.7e-16 Score=158.10 Aligned_cols=101 Identities=20% Similarity=0.225 Sum_probs=81.9
Q ss_pred EECCCCc-EEEEeCCCeEEEEcCCCCeeeeeecCC--ccEEEEEecCCEEEEEecCcEEEEEeC----CCc-----cccc
Q 003171 426 TTSIDGM-IWTGGANGLLLQWDPNGNRLQDFQYLP--FAVQCLCTFGSQIWVGYMNGIVQVLDL----EGN-----LLGG 493 (842)
Q Consensus 426 ~~s~dg~-l~Sgs~DgtIrlWD~~g~~l~~l~~H~--~~V~sls~dG~~LasGs~DgtIrlWD~----~g~-----~i~~ 493 (842)
-+..++. |.|++.|.+|.||++.|+.++++.... +.-..++|+|++|++++.---|+||.+ .|. ..-.
T Consensus 194 GiA~~~k~imsas~dt~i~lw~lkGq~L~~idtnq~~n~~aavSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~ 273 (420)
T KOG2096|consen 194 GIAGNAKYIMSASLDTKICLWDLKGQLLQSIDTNQSSNYDAAVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFS 273 (420)
T ss_pred eecCCceEEEEecCCCcEEEEecCCceeeeeccccccccceeeCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhhe
Confidence 3344444 789999999999999999998886432 233467899999999998888999995 243 3557
Q ss_pred ccccccCEEEEEe--CCCEEEEEcCCCCeeecccc
Q 003171 494 WVAHSSPVIKMAV--GAGYIFTLANHGGIRGWNVT 526 (842)
Q Consensus 494 l~gH~~~V~sla~--dg~~l~S~S~DgtIrvWd~~ 526 (842)
|+||.+.|.++++ +.+.++|.|.||++|+||..
T Consensus 274 LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtd 308 (420)
T KOG2096|consen 274 LKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTD 308 (420)
T ss_pred eccchhheeeeeeCCCcceeEEEecCCcEEEeecc
Confidence 8999999999986 66789999999999999964
|
|
| >KOG0646 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.2e-15 Score=164.62 Aligned_cols=233 Identities=20% Similarity=0.257 Sum_probs=156.2
Q ss_pred eeEEEEecCC--EEEEe-cCCCEEEEeCCCCccccccccccccCCCCCCCCCCeeeeeecCCCeEEEEEcCCCCEEEEEe
Q 003171 134 FLRTIVCTEE--QLWAG-GENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGH 210 (842)
Q Consensus 134 ~~~~l~~~~~--~l~~~-~D~~vrvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~V~~la~dpdg~~LaSGs 210 (842)
.+.+|+.++. -|++| .-+.|++|.+.++..... + +.| -.+|+|+.|+.||.+|+|||
T Consensus 83 ~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v-----------------~--~aH-YQ~ITcL~fs~dgs~iiTgs 142 (476)
T KOG0646|consen 83 PVHALASSNLGYFLLAGTISGNLYLWELSSGILLNV-----------------L--SAH-YQSITCLKFSDDGSHIITGS 142 (476)
T ss_pred ceeeeecCCCceEEEeecccCcEEEEEeccccHHHH-----------------H--Hhh-ccceeEEEEeCCCcEEEecC
Confidence 3667777655 44456 478999999988654321 1 233 67999999999999999999
Q ss_pred CCCcEEEEECCCCcc-CCCCCcceeEEecccCCcEEEEEEecCC---CEEEeeCCCcEEEEeCCCccceeecCCCceeee
Q 003171 211 RDGRIMCWKMNARLL-DSDDGFGEVLSWQAHRGPVLSLCISSYG---DLWSGSEGGGIKIWPWEAIEKALSLKPEERHTA 286 (842)
Q Consensus 211 ~DGtIrlWdl~~g~~-~~~~~~~~~~~l~gH~~~V~slafs~dG---~L~SgS~DgtIrvWd~~t~~~~l~~~~~~~~~~ 286 (842)
+||.|.+|.+..-.. +.....+..+.|..|+-+|+++...+.| +|+|+|.|.|+|+||+..+.-.++..
T Consensus 143 kDg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~------- 215 (476)
T KOG0646|consen 143 KDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTIT------- 215 (476)
T ss_pred CCccEEEEEEEeecccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEe-------
Confidence 999999998654211 1122346678899999999999998754 59999999999999997653222211
Q ss_pred EEEEeeceeecccceeccceeeeecCCEEEEEEcCCCCEEEEeCC-CcEEEEEccCCcEEEEeecCCceEeeeecccCCC
Q 003171 287 ALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGF-LSFALWDARTRELLKVFNIDGQIENRVDMSLLPD 365 (842)
Q Consensus 287 ~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s~-~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~ 365 (842)
....+.+++.++.+..+++|+. +.|.+-++.+- .++..
T Consensus 216 -----------------------fp~si~av~lDpae~~~yiGt~~G~I~~~~~~~~--------~~~~~---------- 254 (476)
T KOG0646|consen 216 -----------------------FPSSIKAVALDPAERVVYIGTEEGKIFQNLLFKL--------SGQSA---------- 254 (476)
T ss_pred -----------------------cCCcceeEEEcccccEEEecCCcceEEeeehhcC--------Ccccc----------
Confidence 1334678888888888888874 44544443210 11100
Q ss_pred cccccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEeecCccccCC--CceEEEEECCCCc-EEEEeCCCeE
Q 003171 366 FAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDN--RRTEALTTSIDGM-IWTGGANGLL 442 (842)
Q Consensus 366 ~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~--~~v~al~~s~dg~-l~Sgs~DgtI 442 (842)
.++ .... .+.....+. +.+|. ..|.+|+++.||. |+||+.||.|
T Consensus 255 -----~v~---~k~~---------~~~~t~~~~----------------~~Gh~~~~~ITcLais~DgtlLlSGd~dg~V 301 (476)
T KOG0646|consen 255 -----GVN---QKGR---------HEENTQINV----------------LVGHENESAITCLAISTDGTLLLSGDEDGKV 301 (476)
T ss_pred -----ccc---cccc---------ccccceeee----------------eccccCCcceeEEEEecCccEEEeeCCCCCE
Confidence 000 0000 000001112 23333 3788899999998 6899999999
Q ss_pred EEEcC-CCCeeeeeecCCccEEEEEe
Q 003171 443 LQWDP-NGNRLQDFQYLPFAVQCLCT 467 (842)
Q Consensus 443 rlWD~-~g~~l~~l~~H~~~V~sls~ 467 (842)
++||+ .-+|++++....++|+.+..
T Consensus 302 cvWdi~S~Q~iRtl~~~kgpVtnL~i 327 (476)
T KOG0646|consen 302 CVWDIYSKQCIRTLQTSKGPVTNLQI 327 (476)
T ss_pred EEEecchHHHHHHHhhhccccceeEe
Confidence 99999 67888888766778887643
|
|
| >KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.67 E-value=2.1e-15 Score=162.72 Aligned_cols=249 Identities=16% Similarity=0.169 Sum_probs=170.8
Q ss_pred CCCeEEEEEcCCC-CEEEEEeCCCcEEEEECCCCccCC--CCCcceeEEecccCCcEEEEEEecC--CCEEEeeCCCcEE
Q 003171 191 VSSVMCMVGDEAS-GVVWSGHRDGRIMCWKMNARLLDS--DDGFGEVLSWQAHRGPVLSLCISSY--GDLWSGSEGGGIK 265 (842)
Q Consensus 191 ~~~V~~la~dpdg-~~LaSGs~DGtIrlWdl~~g~~~~--~~~~~~~~~l~gH~~~V~slafs~d--G~L~SgS~DgtIr 265 (842)
.+.|..+..=|+. .+|||++..+.|.|||...-.... ...+..-+.|.||++.=++|+|++. |.|+||+.|++|+
T Consensus 124 ~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~~i~ 203 (422)
T KOG0264|consen 124 DGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDHTIC 203 (422)
T ss_pred CccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccCCCcEE
Confidence 5566666666654 788889999999999987642100 0133445688999987888999986 5599999999999
Q ss_pred EEeCCCccceeecCCCceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcCC-CCEEEEeC-CCcEEEEEccCCc
Q 003171 266 IWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHS-RAKVWSAG-FLSFALWDARTRE 343 (842)
Q Consensus 266 vWd~~t~~~~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~-~~~v~s~s-~~tI~lWD~~tg~ 343 (842)
+||+...... ...+. ....+.+| ...|.-++...- ...+.+++ ++.+.|||++++.
T Consensus 204 lwdi~~~~~~------~~~~~------p~~~~~~h----------~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~ 261 (422)
T KOG0264|consen 204 LWDINAESKE------DKVVD------PKTIFSGH----------EDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNT 261 (422)
T ss_pred EEeccccccC------Ccccc------ceEEeecC----------CcceehhhccccchhhheeecCCCeEEEEEcCCCC
Confidence 9999653221 00000 00011122 222333333332 23444555 4678999998631
Q ss_pred EEEEeecCCceEeeeecccCCCcccccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEeecCccccCCCceE
Q 003171 344 LLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTE 423 (842)
Q Consensus 344 ~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~ 423 (842)
. .. + . ....|...+.
T Consensus 262 ~----~~--~-------------------------~----------------------------------~~~ah~~~vn 276 (422)
T KOG0264|consen 262 S----KP--S-------------------------H----------------------------------SVKAHSAEVN 276 (422)
T ss_pred C----CC--c-------------------------c----------------------------------cccccCCcee
Confidence 0 00 0 0 0123456677
Q ss_pred EEEECCCCc--EEEEeCCCeEEEEcC-C-CCeeeeeecCCccEEEEEe--c-CCEEEEEecCcEEEEEeCC--Cc-----
Q 003171 424 ALTTSIDGM--IWTGGANGLLLQWDP-N-GNRLQDFQYLPFAVQCLCT--F-GSQIWVGYMNGIVQVLDLE--GN----- 489 (842)
Q Consensus 424 al~~s~dg~--l~Sgs~DgtIrlWD~-~-g~~l~~l~~H~~~V~sls~--d-G~~LasGs~DgtIrlWD~~--g~----- 489 (842)
+++|+|-+- ||+||.|++|+|||+ + .+++.+|.+|...|.+|.. . ...|||++.|+.+.|||+. |+
T Consensus 277 ~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~e 356 (422)
T KOG0264|consen 277 CVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPE 356 (422)
T ss_pred EEEeCCCCCceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEeccccccccChh
Confidence 888877443 799999999999999 4 5789999999999999954 3 3589999999999999975 32
Q ss_pred --------ccccccccccCEEEEEeCC---CEEEEEcCCCCeeecccc
Q 003171 490 --------LLGGWVAHSSPVIKMAVGA---GYIFTLANHGGIRGWNVT 526 (842)
Q Consensus 490 --------~i~~l~gH~~~V~sla~dg---~~l~S~S~DgtIrvWd~~ 526 (842)
++-.-.||++.|..+.+++ -.++|++.|+.+.||...
T Consensus 357 da~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s 404 (422)
T KOG0264|consen 357 DAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMA 404 (422)
T ss_pred hhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeecc
Confidence 2456679999999998754 468999999999999854
|
|
| >KOG0294 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.67 E-value=8.5e-15 Score=151.36 Aligned_cols=233 Identities=20% Similarity=0.268 Sum_probs=162.2
Q ss_pred ceeEEecccCCcEEEEEEecCCCEEEeeCCCcEEEEeCCCccceeecCCCceeeeEEEEeeceeecccceeccceeeeec
Q 003171 232 GEVLSWQAHRGPVLSLCISSYGDLWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILT 311 (842)
Q Consensus 232 ~~~~~l~gH~~~V~slafs~dG~L~SgS~DgtIrvWd~~t~~~~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s 311 (842)
..+..+.+|.++|++||.+. -.++|||.|-||+|+|+......-.+. .+.
T Consensus 34 ~~lF~~~aH~~sitavAVs~-~~~aSGssDetI~IYDm~k~~qlg~ll-----------------------------~Ha 83 (362)
T KOG0294|consen 34 KPLFAFSAHAGSITALAVSG-PYVASGSSDETIHIYDMRKRKQLGILL-----------------------------SHA 83 (362)
T ss_pred eccccccccccceeEEEecc-eeEeccCCCCcEEEEeccchhhhccee-----------------------------ccc
Confidence 44667789999999999863 237899999999999996532211110 113
Q ss_pred CCEEEEEEcCCCC--EEEEeC-CCcEEEEEccCCcEEEEeecCCceEeeeecccCCCcccccceEEEEEecCCCCcccee
Q 003171 312 SDIKNLLSDHSRA--KVWSAG-FLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSS 388 (842)
Q Consensus 312 ~~v~~las~~~~~--~v~s~s-~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s 388 (842)
+.++++-+.++-. .+.|++ |+.|.+|++..-++++++.+|..-++-+
T Consensus 84 gsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~~slK~H~~~Vt~l------------------------------ 133 (362)
T KOG0294|consen 84 GSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELLKSLKAHKGQVTDL------------------------------ 133 (362)
T ss_pred cceEEEEecCCcchhheeeecCCCcEEEEEcCCeEEeeeeccccccccee------------------------------
Confidence 4566666655443 555665 5789999999999999988775433322
Q ss_pred eeEeecCcceEEecCCcEEEEee----cCccccC-CCceEEEEECCCCc-EEEEeCCCeEEEEcCC-CCeeeeeecCCcc
Q 003171 389 FGFFQRSRNAIMGAADAVRRVAA----KGGFGDD-NRRTEALTTSIDGM-IWTGGANGLLLQWDPN-GNRLQDFQYLPFA 461 (842)
Q Consensus 389 ~~~~~~~~~~~~g~~~~v~~v~~----~g~~~~~-~~~v~al~~s~dg~-l~Sgs~DgtIrlWD~~-g~~l~~l~~H~~~ 461 (842)
...|.++.++.-..|++.|.|. ++.+.-. ......|.|+|.|. .+.++.++ |-+|.+. -....++.- ...
T Consensus 134 -siHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L~~~at~v~w~~~Gd~F~v~~~~~-i~i~q~d~A~v~~~i~~-~~r 210 (362)
T KOG0294|consen 134 -SIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLNLKNKATLVSWSPQGDHFVVSGRNK-IDIYQLDNASVFREIEN-PKR 210 (362)
T ss_pred -EecCCCceEEEEcCCceeeeehhhcCccceeeccCCcceeeEEcCCCCEEEEEeccE-EEEEecccHhHhhhhhc-ccc
Confidence 3333344444444555555554 1222211 12223477889887 77777676 9999984 444444432 245
Q ss_pred EEEEEe-cCCEEEEEecCcEEEEEeCC-CcccccccccccCEEEEE----eCCCEEEEEcCCCCeeeccccC
Q 003171 462 VQCLCT-FGSQIWVGYMNGIVQVLDLE-GNLLGGWVAHSSPVIKMA----VGAGYIFTLANHGGIRGWNVTS 527 (842)
Q Consensus 462 V~sls~-dG~~LasGs~DgtIrlWD~~-g~~i~~l~gH~~~V~sla----~dg~~l~S~S~DgtIrvWd~~~ 527 (842)
+.|+-+ ++..|++|..|+.|++||.. +.+...+.+|...|..+. +++.+|+|+|.||.|++||+..
T Consensus 211 ~l~~~~l~~~~L~vG~d~~~i~~~D~ds~~~~~~~~AH~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~~ 282 (362)
T KOG0294|consen 211 ILCATFLDGSELLVGGDNEWISLKDTDSDTPLTEFLAHENRVKDIASYTNPEHEYLVTASSDGFIKVWDIDM 282 (362)
T ss_pred ceeeeecCCceEEEecCCceEEEeccCCCccceeeecchhheeeeEEEecCCceEEEEeccCceEEEEEccc
Confidence 667755 68899999999999999987 788999999999999987 3568999999999999999753
|
|
| >KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.67 E-value=3.2e-15 Score=149.68 Aligned_cols=243 Identities=14% Similarity=0.118 Sum_probs=155.1
Q ss_pred CeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEec--CCC-EEEeeCCCcEEEEeC
Q 003171 193 SVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISS--YGD-LWSGSEGGGIKIWPW 269 (842)
Q Consensus 193 ~V~~la~dpdg~~LaSGs~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~--dG~-L~SgS~DgtIrvWd~ 269 (842)
.|-.+..|=-|++|||++.|++|||+..... ...+.+.+|.||++||+.++|-. .|. |+|+|.||.|-||.-
T Consensus 13 ~IHda~lDyygkrlATcsSD~tVkIf~v~~n-----~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke 87 (299)
T KOG1332|consen 13 MIHDAQLDYYGKRLATCSSDGTVKIFEVRNN-----GQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKE 87 (299)
T ss_pred hhhHhhhhhhcceeeeecCCccEEEEEEcCC-----CCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEec
Confidence 3444455556899999999999999998764 22356788999999999999976 677 789999999999997
Q ss_pred CCccceeecCCCceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcCC--CCEEEEeC-CCcEEEEEccCC-cEE
Q 003171 270 EAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHS--RAKVWSAG-FLSFALWDARTR-ELL 345 (842)
Q Consensus 270 ~t~~~~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~--~~~v~s~s-~~tI~lWD~~tg-~~l 345 (842)
+++.-... +... .| ...+++++..+. +-.|+|++ |++|.|.+.++. .-.
T Consensus 88 ~~g~w~k~-~e~~----------------~h----------~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~ 140 (299)
T KOG1332|consen 88 ENGRWTKA-YEHA----------------AH----------SASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWT 140 (299)
T ss_pred CCCchhhh-hhhh----------------hh----------cccceeecccccccceEEEEeeCCCcEEEEEEcCCCCcc
Confidence 66421100 0000 01 223444444332 23455554 567777665432 100
Q ss_pred --EEeecCCceEeeeecccCCCcccccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEe-e----cCccccC
Q 003171 346 --KVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVA-A----KGGFGDD 418 (842)
Q Consensus 346 --~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~-~----~g~~~~~ 418 (842)
+....| .-|+..+. . .|.+.++
T Consensus 141 t~ki~~aH---------------------------------------------------~~GvnsVswapa~~~g~~~~~ 169 (299)
T KOG1332|consen 141 TSKIVFAH---------------------------------------------------EIGVNSVSWAPASAPGSLVDQ 169 (299)
T ss_pred chhhhhcc---------------------------------------------------ccccceeeecCcCCCcccccc
Confidence 000001 11111110 0 0111111
Q ss_pred CCceEEEEECCCCcEEEEeCCCeEEEEcC-CC--CeeeeeecCCccEEEEE--ec---C-CEEEEEecCcEEEEEeCC--
Q 003171 419 NRRTEALTTSIDGMIWTGGANGLLLQWDP-NG--NRLQDFQYLPFAVQCLC--TF---G-SQIWVGYMNGIVQVLDLE-- 487 (842)
Q Consensus 419 ~~~v~al~~s~dg~l~Sgs~DgtIrlWD~-~g--~~l~~l~~H~~~V~sls--~d---G-~~LasGs~DgtIrlWD~~-- 487 (842)
.. ..+-.+++||+.|++|++|+. ++ +.-++|.+|+++|+.++ |. + .+||++|.||++-||-..
T Consensus 170 ~~------~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e 243 (299)
T KOG1332|consen 170 GP------AAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEE 243 (299)
T ss_pred Cc------ccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecCc
Confidence 00 001135899999999999999 44 44566999999999884 42 2 499999999999999754
Q ss_pred Ccc--cccccccccCEEEEEe--CCCEEEEEcCCCCeeecc
Q 003171 488 GNL--LGGWVAHSSPVIKMAV--GAGYIFTLANHGGIRGWN 524 (842)
Q Consensus 488 g~~--i~~l~gH~~~V~sla~--dg~~l~S~S~DgtIrvWd 524 (842)
+.. ...+.--...++.+.+ .|..|+-++.|+.|.+|.
T Consensus 244 ~e~wk~tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwk 284 (299)
T KOG1332|consen 244 YEPWKKTLLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWK 284 (299)
T ss_pred cCcccccccccCCcceEEEEEeccccEEEEecCCcEEEEEE
Confidence 221 2333345678999874 788999899999999997
|
|
| >KOG2048 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.65 E-value=4.3e-14 Score=158.61 Aligned_cols=235 Identities=18% Similarity=0.244 Sum_probs=166.5
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEeccc-CCcEEEEEEecCCCEEEeeCCCcEEEEeC
Q 003171 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAH-RGPVLSLCISSYGDLWSGSEGGGIKIWPW 269 (842)
Q Consensus 191 ~~~V~~la~dpdg~~LaSGs~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH-~~~V~slafs~dG~L~SgS~DgtIrvWd~ 269 (842)
.++|.|||++.+.+.||.+=.||.|.+|++..+= -+...+.|| .+.|-+++|++.|+|+|.+.+|.|.-||+
T Consensus 25 Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w-------~~~~vi~g~~drsIE~L~W~e~~RLFS~g~sg~i~EwDl 97 (691)
T KOG2048|consen 25 PSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNW-------FLEPVIHGPEDRSIESLAWAEGGRLFSSGLSGSITEWDL 97 (691)
T ss_pred ccceEEEEEeccCCceeeeccCCcEEEEccCCCc-------eeeEEEecCCCCceeeEEEccCCeEEeecCCceEEEEec
Confidence 4589999999999999999999999999998752 345566777 47899999999899999999999999999
Q ss_pred CCccceeecCCCceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcCCCCEEEEeC-CCcEEEEEccCCcEEEEe
Q 003171 270 EAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVF 348 (842)
Q Consensus 270 ~t~~~~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s-~~tI~lWD~~tg~~l~~l 348 (842)
.+++.......- .+.+-.++..+.+..+..+- ++.+...+..+++..
T Consensus 98 ~~lk~~~~~d~~-----------------------------gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~--- 145 (691)
T KOG2048|consen 98 HTLKQKYNIDSN-----------------------------GGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKIT--- 145 (691)
T ss_pred ccCceeEEecCC-----------------------------CcceeEEEeCCccceEEeecCCceEEEEecCCceEE---
Confidence 876543322110 11122233333333333332 222222222222110
Q ss_pred ecCCceEeeeecccCCCcccccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEeecCccccCCCceEEEEEC
Q 003171 349 NIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTS 428 (842)
Q Consensus 349 ~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~al~~s 428 (842)
+ +-.|-....++.+|.+.
T Consensus 146 ------------------------------------------~--------------------~r~l~rq~sRvLslsw~ 163 (691)
T KOG2048|consen 146 ------------------------------------------Y--------------------KRSLMRQKSRVLSLSWN 163 (691)
T ss_pred ------------------------------------------E--------------------EeecccccceEEEEEec
Confidence 0 00022234677889999
Q ss_pred CCCc-EEEEeCCCeEEEEcC-CCCeee--ee---ecCC---ccEEEEEe-cCCEEEEEecCcEEEEEeCC-Ccccccccc
Q 003171 429 IDGM-IWTGGANGLLLQWDP-NGNRLQ--DF---QYLP---FAVQCLCT-FGSQIWVGYMNGIVQVLDLE-GNLLGGWVA 496 (842)
Q Consensus 429 ~dg~-l~Sgs~DgtIrlWD~-~g~~l~--~l---~~H~---~~V~sls~-dG~~LasGs~DgtIrlWD~~-g~~i~~l~g 496 (842)
+++. |++||.||.||+||+ .+..+. ++ .... .-|+++.+ ....|++|.+-|+|+.||.. |.+++....
T Consensus 164 ~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~tI~sgDS~G~V~FWd~~~gTLiqS~~~ 243 (691)
T KOG2048|consen 164 PTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDSTIASGDSAGTVTFWDSIFGTLIQSHSC 243 (691)
T ss_pred CCccEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeecCcEEEecCCceEEEEcccCcchhhhhhh
Confidence 9998 999999999999999 676554 22 1122 23556654 45689999999999999987 899999999
Q ss_pred cccCEEEEEe--CCCEEEEEcCCCCeeecccc
Q 003171 497 HSSPVIKMAV--GAGYIFTLANHGGIRGWNVT 526 (842)
Q Consensus 497 H~~~V~sla~--dg~~l~S~S~DgtIrvWd~~ 526 (842)
|..-|.+|+. ++++++++|.|+.|-.+...
T Consensus 244 h~adVl~Lav~~~~d~vfsaGvd~~ii~~~~~ 275 (691)
T KOG2048|consen 244 HDADVLALAVADNEDRVFSAGVDPKIIQYSLT 275 (691)
T ss_pred hhcceeEEEEcCCCCeEEEccCCCceEEEEec
Confidence 9999999984 56899999999998776643
|
|
| >KOG1407 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.3e-14 Score=146.55 Aligned_cols=241 Identities=17% Similarity=0.153 Sum_probs=157.6
Q ss_pred EEecccCCcEEEEEEecCCC-EEEeeCCCcEEEEeCCCccceeecCCCceeeeEEEEeeceeecccceeccceeeeecCC
Q 003171 235 LSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSD 313 (842)
Q Consensus 235 ~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~~t~~~~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~ 313 (842)
+.+++|.+.|.+|+|..+|. |++||.|++++||+++......... .++| +..
T Consensus 14 r~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~-----------------~~gh----------~~s 66 (313)
T KOG1407|consen 14 RELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELV-----------------YRGH----------TDS 66 (313)
T ss_pred HHhhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhhhc-----------------ccCC----------Ccc
Confidence 56789999999999999997 9999999999999997642221111 1122 222
Q ss_pred EEEEEEcCC-CCEEEEe-CCCcEEEEEccCCcEEEEeecCCceEeeeecccCCCcccccceEEEEEecCCCCccceeeeE
Q 003171 314 IKNLLSDHS-RAKVWSA-GFLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGF 391 (842)
Q Consensus 314 v~~las~~~-~~~v~s~-s~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~ 391 (842)
|.-++-++. ...++++ ++++|++||.++++++....-.+...+ .. .
T Consensus 67 vdql~w~~~~~d~~atas~dk~ir~wd~r~~k~~~~i~~~~eni~-i~-------------------------------w 114 (313)
T KOG1407|consen 67 VDQLCWDPKHPDLFATASGDKTIRIWDIRSGKCTARIETKGENIN-IT-------------------------------W 114 (313)
T ss_pred hhhheeCCCCCcceEEecCCceEEEEEeccCcEEEEeeccCcceE-EE-------------------------------E
Confidence 333343332 2234443 468999999999999876543332111 11 1
Q ss_pred eecCcceEEecCC-cEEEEeecC--cc--ccCCCceEEEEECCCCc-EEEEeCCCeEEEEcC-CCCeeeeeecCCccEEE
Q 003171 392 FQRSRNAIMGAAD-AVRRVAAKG--GF--GDDNRRTEALTTSIDGM-IWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQC 464 (842)
Q Consensus 392 ~~~~~~~~~g~~~-~v~~v~~~g--~~--~~~~~~v~al~~s~dg~-l~Sgs~DgtIrlWD~-~g~~l~~l~~H~~~V~s 464 (842)
++.+.+.+.+..+ -+.-+.... .. .+....+.-+.+..++. +......|+|.+-.- .-+.+++++.|+....|
T Consensus 115 sp~g~~~~~~~kdD~it~id~r~~~~~~~~~~~~e~ne~~w~~~nd~Fflt~GlG~v~ILsypsLkpv~si~AH~snCic 194 (313)
T KOG1407|consen 115 SPDGEYIAVGNKDDRITFIDARTYKIVNEEQFKFEVNEISWNNSNDLFFLTNGLGCVEILSYPSLKPVQSIKAHPSNCIC 194 (313)
T ss_pred cCCCCEEEEecCcccEEEEEecccceeehhcccceeeeeeecCCCCEEEEecCCceEEEEeccccccccccccCCcceEE
Confidence 1112222222211 111111100 00 01112233455555555 344455788988887 78999999999977667
Q ss_pred EE--ecCCEEEEEecCcEEEEEeCC-CcccccccccccCEEEEEe--CCCEEEEEcCCCCeeeccccCCCCCcch
Q 003171 465 LC--TFGSQIWVGYMNGIVQVLDLE-GNLLGGWVAHSSPVIKMAV--GAGYIFTLANHGGIRGWNVTSPGPLDSI 534 (842)
Q Consensus 465 ls--~dG~~LasGs~DgtIrlWD~~-g~~i~~l~gH~~~V~sla~--dg~~l~S~S~DgtIrvWd~~~~~~~d~~ 534 (842)
|. |+|+++|+|+.|-.+.|||++ --|.+.+.-|.-+|..|++ ||++|+|||.|..|-|=++.+.+.+..+
T Consensus 195 I~f~p~GryfA~GsADAlvSLWD~~ELiC~R~isRldwpVRTlSFS~dg~~lASaSEDh~IDIA~vetGd~~~eI 269 (313)
T KOG1407|consen 195 IEFDPDGRYFATGSADALVSLWDVDELICERCISRLDWPVRTLSFSHDGRMLASASEDHFIDIAEVETGDRVWEI 269 (313)
T ss_pred EEECCCCceEeeccccceeeccChhHhhhheeeccccCceEEEEeccCcceeeccCccceEEeEecccCCeEEEe
Confidence 65 479999999999999999997 4578999999999999985 8999999999999977776665555444
|
|
| >KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.5e-16 Score=178.81 Aligned_cols=215 Identities=18% Similarity=0.265 Sum_probs=164.4
Q ss_pred EEEEEeCCCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCCC-EEEeeCCCcEEEEeCCCccceeecCCCce
Q 003171 205 VVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEKALSLKPEER 283 (842)
Q Consensus 205 ~LaSGs~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~~t~~~~l~~~~~~~ 283 (842)
.+..+..+-..|+|+... +.+|...|.++..-..++ +++|++|-.+.||....--...++
T Consensus 6 ~~m~~~~~t~Lr~~~~~~--------------~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~S~----- 66 (825)
T KOG0267|consen 6 FLMKTKRATKLRVWDTRE--------------FVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAITSL----- 66 (825)
T ss_pred ccceeeeeeccccccchh--------------hhhhhhhhceeeeeccceeeccCCCceeeccccccCCchhhee-----
Confidence 444555566677776433 457899999998866666 689999999999987331111111
Q ss_pred eeeEEEEeeceeecccceeccceeeeecCCEEEEEEcCCCCEEEEeC-CCcEEEEEccCCcEEEEeecCCceEeeeeccc
Q 003171 284 HTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVFNIDGQIENRVDMSL 362 (842)
Q Consensus 284 ~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s-~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~ 362 (842)
.+| ...|.++.++.....|..|+ +++||+||++.++.+++|.+|-
T Consensus 67 --------------~~h----------espIeSl~f~~~E~LlaagsasgtiK~wDleeAk~vrtLtgh~---------- 112 (825)
T KOG0267|consen 67 --------------TGH----------ESPIESLTFDTSERLLAAGSASGTIKVWDLEEAKIVRTLTGHL---------- 112 (825)
T ss_pred --------------ecc----------CCcceeeecCcchhhhcccccCCceeeeehhhhhhhhhhhccc----------
Confidence 122 55688888888777777776 6799999999877666654432
Q ss_pred CCCcccccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEeecCccccCCCceEEEEECCCCc-EEEEeCCCe
Q 003171 363 LPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGM-IWTGGANGL 441 (842)
Q Consensus 363 ~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~al~~s~dg~-l~Sgs~Dgt 441 (842)
..+..|.|.|-+. .++|+.|+.
T Consensus 113 ---------------------------------------------------------~~~~sv~f~P~~~~~a~gStdtd 135 (825)
T KOG0267|consen 113 ---------------------------------------------------------LNITSVDFHPYGEFFASGSTDTD 135 (825)
T ss_pred ---------------------------------------------------------cCcceeeeccceEEecccccccc
Confidence 1223344555554 578999999
Q ss_pred EEEEcC-CCCeeeeeecCCccEEEE--EecCCEEEEEecCcEEEEEeCC-CcccccccccccCEEEEEeCCC--EEEEEc
Q 003171 442 LLQWDP-NGNRLQDFQYLPFAVQCL--CTFGSQIWVGYMNGIVQVLDLE-GNLLGGWVAHSSPVIKMAVGAG--YIFTLA 515 (842)
Q Consensus 442 IrlWD~-~g~~l~~l~~H~~~V~sl--s~dG~~LasGs~DgtIrlWD~~-g~~i~~l~gH~~~V~sla~dg~--~l~S~S 515 (842)
+++||. ...|..++.+|...|.++ .|+|+++++|+.|.+++|||+. |+++..|.+|++.|.++.+++. .+++||
T Consensus 136 ~~iwD~Rk~Gc~~~~~s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~agk~~~ef~~~e~~v~sle~hp~e~Lla~Gs 215 (825)
T KOG0267|consen 136 LKIWDIRKKGCSHTYKSHTRVVDVLRLSPDGRWVASGGEDNTVKIWDLTAGKLSKEFKSHEGKVQSLEFHPLEVLLAPGS 215 (825)
T ss_pred ceehhhhccCceeeecCCcceeEEEeecCCCceeeccCCcceeeeecccccccccccccccccccccccCchhhhhccCC
Confidence 999999 478999999999888876 5799999999999999999986 9999999999999999987654 577999
Q ss_pred CCCCeeeccccCCC
Q 003171 516 NHGGIRGWNVTSPG 529 (842)
Q Consensus 516 ~DgtIrvWd~~~~~ 529 (842)
.|++||+||++++.
T Consensus 216 ~d~tv~f~dletfe 229 (825)
T KOG0267|consen 216 SDRTVRFWDLETFE 229 (825)
T ss_pred CCceeeeeccceeE
Confidence 99999999987643
|
|
| >KOG0269 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.65 E-value=9.3e-16 Score=173.70 Aligned_cols=224 Identities=18% Similarity=0.231 Sum_probs=160.8
Q ss_pred CCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCC-C-EEEeeCCCcEEEEeCCCccceeecC
Q 003171 202 ASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYG-D-LWSGSEGGGIKIWPWEAIEKALSLK 279 (842)
Q Consensus 202 dg~~LaSGs~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG-~-L~SgS~DgtIrvWd~~t~~~~l~~~ 279 (842)
+.++|||++..|.|-+||+.... +-+.+..|..|+..|+++.|++.- . |+|||+||+||+||+.......++
T Consensus 99 ~~NlIAT~s~nG~i~vWdlnk~~-----rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~- 172 (839)
T KOG0269|consen 99 YSNLIATCSTNGVISVWDLNKSI-----RNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTF- 172 (839)
T ss_pred hhhhheeecCCCcEEEEecCccc-----cchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccccccc-
Confidence 45899999999999999998721 114556789999999999999864 3 789999999999999653221111
Q ss_pred CCceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcCC-CCEEEEeCC-CcEEEEEccCCcEEEEeecCCceEee
Q 003171 280 PEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHS-RAKVWSAGF-LSFALWDARTRELLKVFNIDGQIENR 357 (842)
Q Consensus 280 ~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~-~~~v~s~s~-~tI~lWD~~tg~~l~~l~~~~~~~~~ 357 (842)
++ -+..++-+.+++. +.+++++.+ +.+++||++.-.. .
T Consensus 173 ------------------~~----------nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r---------~--- 212 (839)
T KOG0269|consen 173 ------------------RS----------NSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDR---------C--- 212 (839)
T ss_pred ------------------cc----------cchhhhceeeccCCCceEEEecCCceEEEeeccCchh---------H---
Confidence 11 0334566666654 445666665 5789999863211 0
Q ss_pred eecccCCCcccccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEeecCccccCCCceEEEEECCCCc-EEEE
Q 003171 358 VDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGM-IWTG 436 (842)
Q Consensus 358 ~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~al~~s~dg~-l~Sg 436 (842)
. -.+..|.+.|.++-+.|++. ||||
T Consensus 213 -------------------------~-----------------------------~k~~AH~GpV~c~nwhPnr~~lATG 238 (839)
T KOG0269|consen 213 -------------------------E-----------------------------KKLTAHNGPVLCLNWHPNREWLATG 238 (839)
T ss_pred -------------------------H-----------------------------HHhhcccCceEEEeecCCCceeeec
Confidence 0 01445777888899999877 8999
Q ss_pred eCCCeEEEEcCCC-C--eeeeeecCCccEEEEEe--cC-CEEEEEec--CcEEEEEeCCCcc--cccccccccCEEEEEe
Q 003171 437 GANGLLLQWDPNG-N--RLQDFQYLPFAVQCLCT--FG-SQIWVGYM--NGIVQVLDLEGNL--LGGWVAHSSPVIKMAV 506 (842)
Q Consensus 437 s~DgtIrlWD~~g-~--~l~~l~~H~~~V~sls~--dG-~~LasGs~--DgtIrlWD~~g~~--i~~l~gH~~~V~sla~ 506 (842)
+.|++|||||.++ + .+.++. -..+|.++.. +- .+||+++. |-.|+|||++..+ -+++..|++.|+.+++
T Consensus 239 GRDK~vkiWd~t~~~~~~~~tIn-Tiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~~~vt~i~W 317 (839)
T KOG0269|consen 239 GRDKMVKIWDMTDSRAKPKHTIN-TIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPYATFLEHTDSVTGIAW 317 (839)
T ss_pred CCCccEEEEeccCCCccceeEEe-ecceeeeeeeccCccchhhhhhccccceEEEEeeccccccceeeeccCccccceec
Confidence 9999999999964 2 223332 1346777754 33 37888774 8899999998653 6899999999999997
Q ss_pred CC---CEEEEEcCCCCeeecccc
Q 003171 507 GA---GYIFTLANHGGIRGWNVT 526 (842)
Q Consensus 507 dg---~~l~S~S~DgtIrvWd~~ 526 (842)
++ ..++|+|.|++|..=.+.
T Consensus 318 ~~~d~~~l~s~sKD~tv~qh~~k 340 (839)
T KOG0269|consen 318 DSGDRINLWSCSKDGTVLQHLFK 340 (839)
T ss_pred cCCCceeeEeecCccHHHHhhhh
Confidence 43 568899999998655443
|
|
| >KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.65 E-value=2.1e-15 Score=166.11 Aligned_cols=265 Identities=22% Similarity=0.285 Sum_probs=162.0
Q ss_pred ceeEEEEecCC--EEE-EecCCCEEEEeCCCCccccccccccccCCCCCCCCCCeeeeeecCCCeEEEEEcCCCCEEEEE
Q 003171 133 CFLRTIVCTEE--QLW-AGGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSG 209 (842)
Q Consensus 133 ~~~~~l~~~~~--~l~-~~~D~~vrvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~V~~la~dpdg~~LaSG 209 (842)
.++|.+++... .|+ ++.|++|++|++++..... -+..++...|+. | .+||+|+++.+.+..++||
T Consensus 295 d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~---------~~~~epi~tfra--H-~gPVl~v~v~~n~~~~ysg 362 (577)
T KOG0642|consen 295 DCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSA---------EKDVEPILTFRA--H-EGPVLCVVVPSNGEHCYSG 362 (577)
T ss_pred hhhhhhhcCCCCCeEEEeccccchhhhhhcccCCcc---------ccceeeeEEEec--c-cCceEEEEecCCceEEEee
Confidence 46777776533 344 4679999999996532211 112233334443 3 8899999999999999999
Q ss_pred eCCCcEEEEECCCCccC---CCCCcceeEEecccCCcEEEEEEecCCC-EEEeeCCCcEEEEeCCCccceeecCCCceee
Q 003171 210 HRDGRIMCWKMNARLLD---SDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEKALSLKPEERHT 285 (842)
Q Consensus 210 s~DGtIrlWdl~~g~~~---~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~~t~~~~l~~~~~~~~~ 285 (842)
+.||+||.|++.. ..+ ...+....-++.||++.|+.+++|+... |+++|.|||+|+|+...... ..+.....+.
T Consensus 363 g~Dg~I~~w~~p~-n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~-~~f~~~~e~g 440 (577)
T KOG0642|consen 363 GIDGTIRCWNLPP-NQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESP-CTFGEPKEHG 440 (577)
T ss_pred ccCceeeeeccCC-CCCcccccCcchhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCc-cccCCccccC
Confidence 9999999998773 222 1223344567899999999999999765 99999999999999855333 1111111111
Q ss_pred eEEEEeeceeecccceeccceeeeecCCEEEEEEcCCCCEEEEeC--CCcEEEEEccCCcEEEEeecCCceEeeeecccC
Q 003171 286 AALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG--FLSFALWDARTRELLKVFNIDGQIENRVDMSLL 363 (842)
Q Consensus 286 ~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s--~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~ 363 (842)
..+ ++........+..++ .+---+.|..++.-+.+|.....
T Consensus 441 ~Pl---------------------------svd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~---------- 483 (577)
T KOG0642|consen 441 YPL---------------------------SVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSAS---------- 483 (577)
T ss_pred Ccc---------------------------eEeeccchhHhhhhhcccccccchhhhhhhheeeccccCC----------
Confidence 111 111111110000000 00111223333322222210000
Q ss_pred CCcccccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEeecCccccCCCceEEEEECC-CCcEEEEeCCCeE
Q 003171 364 PDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSI-DGMIWTGGANGLL 442 (842)
Q Consensus 364 ~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~al~~s~-dg~l~Sgs~DgtI 442 (842)
.+.++ ...+.-++.-| .+..+++..|++|
T Consensus 484 ----------------------------------------~~~~~----------~~~in~vVs~~~~~~~~~~hed~~I 513 (577)
T KOG0642|consen 484 ----------------------------------------PGPRR----------YPQINKVVSHPTADITFTAHEDRSI 513 (577)
T ss_pred ----------------------------------------Ccccc----------cCccceEEecCCCCeeEecccCCce
Confidence 00000 00011112222 2346889999999
Q ss_pred EEEcC-CCCeeeeeecCCccEEEEEe--cCCEEEEEecCcEEEEEeCC-Ccccccccccc
Q 003171 443 LQWDP-NGNRLQDFQYLPFAVQCLCT--FGSQIWVGYMNGIVQVLDLE-GNLLGGWVAHS 498 (842)
Q Consensus 443 rlWD~-~g~~l~~l~~H~~~V~sls~--dG~~LasGs~DgtIrlWD~~-g~~i~~l~gH~ 498 (842)
+++|. +|+.+..+..|...|++++. .|-+|.+|+.|+.|++|.+. -.|+....+|.
T Consensus 514 r~~dn~~~~~l~s~~a~~~svtslai~~ng~~l~s~s~d~sv~l~kld~k~~~~es~~~r 573 (577)
T KOG0642|consen 514 RFFDNKTGKILHSMVAHKDSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVKTCVLESTAHR 573 (577)
T ss_pred ecccccccccchheeeccceecceeecCCCceEEeecCCceeehhhccchheeecccccc
Confidence 99999 89999999999999999876 57799999999999999986 44666666664
|
|
| >KOG0283 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.64 E-value=2.1e-14 Score=165.11 Aligned_cols=198 Identities=15% Similarity=0.207 Sum_probs=140.7
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCCC--EEEeeCCCcEEEEe
Q 003171 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD--LWSGSEGGGIKIWP 268 (842)
Q Consensus 191 ~~~V~~la~dpdg~~LaSGs~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~--L~SgS~DgtIrvWd 268 (842)
++-|+.|.|+ ..++|.|+|.|.|||||.+... .++..-.|.+-||||+|.|-.. ++|||-|+-||||+
T Consensus 369 t~DILDlSWS-Kn~fLLSSSMDKTVRLWh~~~~---------~CL~~F~HndfVTcVaFnPvDDryFiSGSLD~KvRiWs 438 (712)
T KOG0283|consen 369 TADILDLSWS-KNNFLLSSSMDKTVRLWHPGRK---------ECLKVFSHNDFVTCVAFNPVDDRYFISGSLDGKVRLWS 438 (712)
T ss_pred chhheecccc-cCCeeEeccccccEEeecCCCc---------ceeeEEecCCeeEEEEecccCCCcEeecccccceEEee
Confidence 7899999999 5689999999999999999873 4455557999999999999653 89999999999999
Q ss_pred CCCccceeecCCCceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcCCCCEEEEeCC-CcEEEEEccCCcEEEE
Q 003171 269 WEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGF-LSFALWDARTRELLKV 347 (842)
Q Consensus 269 ~~t~~~~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s~-~tI~lWD~~tg~~l~~ 347 (842)
+.. +.+..- -|+ ..-|+.+++.|+|.-+..|+. +.+++|++..-++...
T Consensus 439 I~d--~~Vv~W---------------~Dl-------------~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~ 488 (712)
T KOG0283|consen 439 ISD--KKVVDW---------------NDL-------------RDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSD 488 (712)
T ss_pred cCc--CeeEee---------------hhh-------------hhhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEe
Confidence 843 222111 111 123667788888877777774 5688998876554333
Q ss_pred eecCCceEeeeecccCCCcccccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEeecCccccCCCceEEEEE
Q 003171 348 FNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTT 427 (842)
Q Consensus 348 l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~al~~ 427 (842)
+..+. ... .+. .+ ++|+.+.+
T Consensus 489 ~~I~~-------------------------~~~--Kk~-------------------------------~~-~rITG~Q~ 509 (712)
T KOG0283|consen 489 FHIRL-------------------------HNK--KKK-------------------------------QG-KRITGLQF 509 (712)
T ss_pred eeEee-------------------------ccC--ccc-------------------------------cC-ceeeeeEe
Confidence 21110 000 010 11 24555555
Q ss_pred CCCC--cEEEEeCCCeEEEEcC-CCCeeeeeecCCc---cEE-EEEecCCEEEEEecCcEEEEEeCC
Q 003171 428 SIDG--MIWTGGANGLLLQWDP-NGNRLQDFQYLPF---AVQ-CLCTFGSQIWVGYMNGIVQVLDLE 487 (842)
Q Consensus 428 s~dg--~l~Sgs~DgtIrlWD~-~g~~l~~l~~H~~---~V~-sls~dG~~LasGs~DgtIrlWD~~ 487 (842)
.|.. .+++.+.|..|||+|+ +-+++..|+|+.+ .+. ++..||++|++|+.|..|+||+..
T Consensus 510 ~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~seDs~VYiW~~~ 576 (712)
T KOG0283|consen 510 FPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVSASEDSWVYIWKND 576 (712)
T ss_pred cCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCCcceeeeEccCCCEEEEeecCceEEEEeCC
Confidence 4432 4777788999999999 6678888887543 233 355699999999999999999975
|
|
| >KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.64 E-value=9e-14 Score=143.76 Aligned_cols=252 Identities=13% Similarity=0.192 Sum_probs=169.2
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCCCEEEeeCCCcEEEEeCCC
Q 003171 192 SSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGDLWSGSEGGGIKIWPWEA 271 (842)
Q Consensus 192 ~~V~~la~dpdg~~LaSGs~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~L~SgS~DgtIrvWd~~t 271 (842)
..|..|.|+|.++.|..++.||++|+++.... ..+..--|..|+.+.+|.++.++++|+-||.||+.|+.+
T Consensus 14 d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~---------~l~~~~~~~~plL~c~F~d~~~~~~G~~dg~vr~~Dln~ 84 (323)
T KOG1036|consen 14 DGISSVKFSPSSSDLLVSSWDGSLRLYDVPAN---------SLKLKFKHGAPLLDCAFADESTIVTGGLDGQVRRYDLNT 84 (323)
T ss_pred hceeeEEEcCcCCcEEEEeccCcEEEEeccch---------hhhhheecCCceeeeeccCCceEEEeccCceEEEEEecC
Confidence 46889999999999999999999999999873 233334589999999999988899999999999999987
Q ss_pred ccceeecCCCceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcCCCCEEEEeCC-CcEEEEEccCCcEEEEeec
Q 003171 272 IEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGF-LSFALWDARTRELLKVFNI 350 (842)
Q Consensus 272 ~~~~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s~-~tI~lWD~~tg~~l~~l~~ 350 (842)
+....... | ...++++........|.+++| ++|++||.+...+..++..
T Consensus 85 ~~~~~igt--------------------h----------~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d~ 134 (323)
T KOG1036|consen 85 GNEDQIGT--------------------H----------DEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFDQ 134 (323)
T ss_pred Ccceeecc--------------------C----------CCceEEEEeeccCCeEEEcccCccEEEEecccccccccccc
Confidence 54322111 1 335677777766778888885 6999999987444333321
Q ss_pred CCceEeeeecccCCCcccccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEeec----Ccccc----CCCce
Q 003171 351 DGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAK----GGFGD----DNRRT 422 (842)
Q Consensus 351 ~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~----g~~~~----~~~~v 422 (842)
...+ +..+. .+..+++|..+.-..++.. -.++. -...+
T Consensus 135 ~kkV-y~~~v---------------------------------~g~~LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyqt 180 (323)
T KOG1036|consen 135 GKKV-YCMDV---------------------------------SGNRLVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQT 180 (323)
T ss_pred CceE-EEEec---------------------------------cCCEEEEeecCceEEEEEcccccchhhhccccceeEE
Confidence 1111 11110 1223345454433333321 11111 11245
Q ss_pred EEEEECCCCc-EEEEeCCCeEEEEcCC-C----CeeeeeecCC---------ccEEEEEecC--CEEEEEecCcEEEEEe
Q 003171 423 EALTTSIDGM-IWTGGANGLLLQWDPN-G----NRLQDFQYLP---------FAVQCLCTFG--SQIWVGYMNGIVQVLD 485 (842)
Q Consensus 423 ~al~~s~dg~-l~Sgs~DgtIrlWD~~-g----~~l~~l~~H~---------~~V~sls~dG--~~LasGs~DgtIrlWD 485 (842)
++++.-|++. .+.+|-||-|-+=..+ . +.-..|+.|. .+|++|++.. ..+|+|+.||.|-+||
T Consensus 181 R~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd 260 (323)
T KOG1036|consen 181 RCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGGSDGIVNIWD 260 (323)
T ss_pred EEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEeccccceEEecCCCceEEEcc
Confidence 6777767655 6778889977665542 2 3344566664 3688888764 4899999999999999
Q ss_pred CC-CcccccccccccCEEEEEe--CCCEEEEEcC
Q 003171 486 LE-GNLLGGWVAHSSPVIKMAV--GAGYIFTLAN 516 (842)
Q Consensus 486 ~~-g~~i~~l~gH~~~V~sla~--dg~~l~S~S~ 516 (842)
+. .+.+..+..-...|.++++ ||..||.++.
T Consensus 261 ~~~rKrl~q~~~~~~SI~slsfs~dG~~LAia~s 294 (323)
T KOG1036|consen 261 LFNRKRLKQLAKYETSISSLSFSMDGSLLAIASS 294 (323)
T ss_pred CcchhhhhhccCCCCceEEEEeccCCCeEEEEec
Confidence 87 4566666666677888885 7888887653
|
|
| >KOG1408 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.2e-14 Score=162.52 Aligned_cols=225 Identities=14% Similarity=0.088 Sum_probs=153.7
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCC---C-EEEeeCCCcEEE
Q 003171 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYG---D-LWSGSEGGGIKI 266 (842)
Q Consensus 191 ~~~V~~la~dpdg~~LaSGs~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG---~-L~SgS~DgtIrv 266 (842)
...+.|++++|+|+.||+|..-|++|++++..- ++.....+|...|.|+.||..- + |+|||.|..|.|
T Consensus 459 r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l--------~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV 530 (1080)
T KOG1408|consen 459 RFGFRALAVSPDGQHLASGDRGGNLRVYDLQEL--------EYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHV 530 (1080)
T ss_pred ccceEEEEECCCcceecccCccCceEEEEehhh--------hhhhheecccceeEEEeecCchhhhHhhhhccCCceEEE
Confidence 557999999999999999999999999999874 5667789999999999999642 3 689999999999
Q ss_pred EeCCCcc-ceeecCCCceeeeEEEEeece-------------eecccce-eccce------eeeecCCEEEEEEcCCCCE
Q 003171 267 WPWEAIE-KALSLKPEERHTAALIVERSY-------------IDLRSHL-SVNGF------SSILTSDIKNLLSDHSRAK 325 (842)
Q Consensus 267 Wd~~t~~-~~l~~~~~~~~~~~l~~~~s~-------------~~l~~~~-~~~~~------~~~~s~~v~~las~~~~~~ 325 (842)
+|+...- ...++..+...+.++-+.... +.++... ...+. ..+....+.-++.++.-..
T Consensus 531 ~Dv~rny~l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~ 610 (1080)
T KOG1408|consen 531 YDVKRNYDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKL 610 (1080)
T ss_pred EecccccchhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCCcce
Confidence 9985411 111122222222222221111 1111100 00011 1112233445666665555
Q ss_pred EEE-eCCCcEEEEEccCCcEEEEeecCCceEeeeecccCCCcccccceEEEEEecCCCCccceeeeEeecCcceEEecCC
Q 003171 326 VWS-AGFLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAAD 404 (842)
Q Consensus 326 v~s-~s~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~ 404 (842)
+++ +.|+.|+|+|+++|+..++|++.-..
T Consensus 611 v~t~cQDrnirif~i~sgKq~k~FKgs~~~-------------------------------------------------- 640 (1080)
T KOG1408|consen 611 VVTVCQDRNIRIFDIESGKQVKSFKGSRDH-------------------------------------------------- 640 (1080)
T ss_pred EEEEecccceEEEeccccceeeeecccccC--------------------------------------------------
Confidence 544 44778888888888887777643211
Q ss_pred cEEEEeecCccccCCCceEEEEECCCCc-EEEEeCCCeEEEEcC-CCCeeeeeecCCccEEEEEe--cCCEEEEEecCcE
Q 003171 405 AVRRVAAKGGFGDDNRRTEALTTSIDGM-IWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQCLCT--FGSQIWVGYMNGI 480 (842)
Q Consensus 405 ~v~~v~~~g~~~~~~~~v~al~~s~dg~-l~Sgs~DgtIrlWD~-~g~~l~~l~~H~~~V~sls~--dG~~LasGs~Dgt 480 (842)
.+...-+...|.|. |++.+.|+++.++|. .|+|+.++.||+..|+.+.+ |-++|++.+.||.
T Consensus 641 --------------eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcvA~m~GHsE~VTG~kF~nDCkHlISvsgDgC 706 (1080)
T KOG1408|consen 641 --------------EGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGECVAQMTGHSEAVTGVKFLNDCKHLISVSGDGC 706 (1080)
T ss_pred --------------CCceEEEEECCCccEEEEeecCCceEEEEeccchhhhhhcCcchheeeeeecccchhheeecCCce
Confidence 01111233445554 888899999999999 89999999999999999865 6789999999999
Q ss_pred EEEEeCC
Q 003171 481 VQVLDLE 487 (842)
Q Consensus 481 IrlWD~~ 487 (842)
|-||.+.
T Consensus 707 IFvW~lp 713 (1080)
T KOG1408|consen 707 IFVWKLP 713 (1080)
T ss_pred EEEEECc
Confidence 9999964
|
|
| >KOG0302 consensus Ribosome Assembly protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.64 E-value=5.3e-15 Score=155.86 Aligned_cols=112 Identities=18% Similarity=0.299 Sum_probs=96.4
Q ss_pred cccCCCceEEEEECCC--CcEEEEeCCCeEEEEcC-CC---CeeeeeecCCccEEEEEecCC--EEEEEecCcEEEEEeC
Q 003171 415 FGDDNRRTEALTTSID--GMIWTGGANGLLLQWDP-NG---NRLQDFQYLPFAVQCLCTFGS--QIWVGYMNGIVQVLDL 486 (842)
Q Consensus 415 ~~~~~~~v~al~~s~d--g~l~Sgs~DgtIrlWD~-~g---~~l~~l~~H~~~V~sls~dG~--~LasGs~DgtIrlWD~ 486 (842)
|.+|...|+.|.+||. +.++|||.||+|||||+ .+ .|+.+ +.|...|+.|+.+++ +||+|+.||+++|||+
T Consensus 253 f~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~-kAh~sDVNVISWnr~~~lLasG~DdGt~~iwDL 331 (440)
T KOG0302|consen 253 FTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVST-KAHNSDVNVISWNRREPLLASGGDDGTLSIWDL 331 (440)
T ss_pred ccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEe-eccCCceeeEEccCCcceeeecCCCceEEEEEh
Confidence 5567788888999884 55899999999999999 56 45554 789999999998654 8999999999999998
Q ss_pred C----CcccccccccccCEEEEEeC---CCEEEEEcCCCCeeeccccC
Q 003171 487 E----GNLLGGWVAHSSPVIKMAVG---AGYIFTLANHGGIRGWNVTS 527 (842)
Q Consensus 487 ~----g~~i~~l~gH~~~V~sla~d---g~~l~S~S~DgtIrvWd~~~ 527 (842)
+ ++++++++-|..+|++|.+. .+.++.+|.|..|.+||+..
T Consensus 332 R~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsv 379 (440)
T KOG0302|consen 332 RQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLSV 379 (440)
T ss_pred hhccCCCcceeEEeccCCeeEEEeccccCceEEeccCCCcEEEEEeec
Confidence 5 57899999999999999974 66788999999999999764
|
|
| >KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.63 E-value=2.8e-14 Score=157.67 Aligned_cols=289 Identities=15% Similarity=0.130 Sum_probs=181.9
Q ss_pred eecCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCCC--EEEeeCCCcEE
Q 003171 188 VKGVSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD--LWSGSEGGGIK 265 (842)
Q Consensus 188 ~~g~~~V~~la~dpdg~~LaSGs~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~--L~SgS~DgtIr 265 (842)
+| ++-|.|+.++|.|.+|+||+.||++|+|.+.+| .++.+++- -+.|.||+|+|.+. ++..+.+.++-
T Consensus 398 GH-tg~Vr~iSvdp~G~wlasGsdDGtvriWEi~Tg--------Rcvr~~~~-d~~I~~vaw~P~~~~~vLAvA~~~~~~ 467 (733)
T KOG0650|consen 398 GH-TGLVRSISVDPSGEWLASGSDDGTVRIWEIATG--------RCVRTVQF-DSEIRSVAWNPLSDLCVLAVAVGECVL 467 (733)
T ss_pred cc-CCeEEEEEecCCcceeeecCCCCcEEEEEeecc--------eEEEEEee-cceeEEEEecCCCCceeEEEEecCceE
Confidence 44 899999999999999999999999999999998 67766542 34799999999987 45555555566
Q ss_pred EEeCCCccceee---------cCCCceeeeEEEEeeceeecccc---eeccceeee--ecCCEEEEEEcCCCCEEEEeC-
Q 003171 266 IWPWEAIEKALS---------LKPEERHTAALIVERSYIDLRSH---LSVNGFSSI--LTSDIKNLLSDHSRAKVWSAG- 330 (842)
Q Consensus 266 vWd~~t~~~~l~---------~~~~~~~~~~l~~~~s~~~l~~~---~~~~~~~~~--~s~~v~~las~~~~~~v~s~s- 330 (842)
|-+..-+..... ...+.....+ .+.+... .-..++|.. ....++.+.-...|..+++..
T Consensus 468 ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~------~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~ 541 (733)
T KOG0650|consen 468 IVNPIFGDRLEVGPTKELLASAPNESEPDAA------VVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMP 541 (733)
T ss_pred EeCccccchhhhcchhhhhhcCCCccCCccc------ceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEecc
Confidence 665432211100 0000000000 0000000 000011110 112233333333333333221
Q ss_pred ---CCcEEEEEccCCcEEEEeecCCceEeeeecccCCCcccccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEE
Q 003171 331 ---FLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVR 407 (842)
Q Consensus 331 ---~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~ 407 (842)
.+.|.|.++..+....-|. +.......+.|.+.....++.++..|+
T Consensus 542 ~~~~~~VliHQLSK~~sQ~PF~-------------------------------kskG~vq~v~FHPs~p~lfVaTq~~vR 590 (733)
T KOG0650|consen 542 DSGNKSVLIHQLSKRKSQSPFR-------------------------------KSKGLVQRVKFHPSKPYLFVATQRSVR 590 (733)
T ss_pred CCCcceEEEEecccccccCchh-------------------------------hcCCceeEEEecCCCceEEEEeccceE
Confidence 1233344433222111010 011122245677766777888887777
Q ss_pred EEee-cC----ccccCCCceEEEEECCCCc-EEEEeCCCeEEEEcC--CCCeeeeeecCCccEEEEEecCC--EEEEEec
Q 003171 408 RVAA-KG----GFGDDNRRTEALTTSIDGM-IWTGGANGLLLQWDP--NGNRLQDFQYLPFAVQCLCTFGS--QIWVGYM 477 (842)
Q Consensus 408 ~v~~-~g----~~~~~~~~v~al~~s~dg~-l~Sgs~DgtIrlWD~--~g~~l~~l~~H~~~V~sls~dG~--~LasGs~ 477 (842)
..+. ++ .+......|..+++.|.|- |+.|+.|+.+..+|+ ..+..+++..|...|+++++.++ .+++|+.
T Consensus 591 iYdL~kqelvKkL~tg~kwiS~msihp~GDnli~gs~d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~ryPLfas~sd 670 (733)
T KOG0650|consen 591 IYDLSKQELVKKLLTGSKWISSMSIHPNGDNLILGSYDKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYPLFASGSD 670 (733)
T ss_pred EEehhHHHHHHHHhcCCeeeeeeeecCCCCeEEEecCCCeeEEEEcccCcchhHHhhhhhhhhhhhhhccccceeeeecC
Confidence 7664 22 2233456788899999775 899999999999999 45788999999999999999887 8999999
Q ss_pred CcEEEEEeC------CCc----ccccccccccC----EEEEEeCCC--EEEEEcCCCCeeec
Q 003171 478 NGIVQVLDL------EGN----LLGGWVAHSSP----VIKMAVGAG--YIFTLANHGGIRGW 523 (842)
Q Consensus 478 DgtIrlWD~------~g~----~i~~l~gH~~~----V~sla~dg~--~l~S~S~DgtIrvW 523 (842)
||++.|+-. -.+ .+..++||.-. |....++++ +|+|++.||+||+|
T Consensus 671 Dgtv~Vfhg~VY~Dl~qnpliVPlK~L~gH~~~~~~gVLd~~wHP~qpWLfsAGAd~tirlf 732 (733)
T KOG0650|consen 671 DGTVIVFHGMVYNDLLQNPLIVPLKRLRGHEKTNDLGVLDTIWHPRQPWLFSAGADGTIRLF 732 (733)
T ss_pred CCcEEEEeeeeehhhhcCCceEeeeeccCceeecccceEeecccCCCceEEecCCCceEEee
Confidence 999999852 112 47889999876 777667665 79999999999998
|
|
| >KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.9e-14 Score=145.81 Aligned_cols=196 Identities=17% Similarity=0.232 Sum_probs=148.2
Q ss_pred EEecccCCcEEEEEEecCCC-EEEeeCCCcEEEEeCCCccceeecCCCceeeeEEEEeeceeecccceeccceeeeecCC
Q 003171 235 LSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSD 313 (842)
Q Consensus 235 ~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~~t~~~~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~ 313 (842)
..++||..+++-|.+..+|. |+|++.|.++.||--..++..-++. || ++.
T Consensus 4 i~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty~-------------------GH----------tGa 54 (327)
T KOG0643|consen 4 ILLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTYD-------------------GH----------TGA 54 (327)
T ss_pred cccccCccccceEEecCCCcEEEEecCCCCceEEEecCCceeeeec-------------------CC----------Cce
Confidence 45799999999999999999 5799999999999875555433332 22 345
Q ss_pred EEEEEEcCCCCEEEEeC-CCcEEEEEccCCcEEEEeecCCceEeeeecccCCCcccccceEEEEEecCCCCccceeeeEe
Q 003171 314 IKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFF 392 (842)
Q Consensus 314 v~~las~~~~~~v~s~s-~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~ 392 (842)
|-++..+-+...+.+++ |++++|||+.||+++.++....
T Consensus 55 vW~~Did~~s~~liTGSAD~t~kLWDv~tGk~la~~k~~~---------------------------------------- 94 (327)
T KOG0643|consen 55 VWCCDIDWDSKHLITGSADQTAKLWDVETGKQLATWKTNS---------------------------------------- 94 (327)
T ss_pred EEEEEecCCcceeeeccccceeEEEEcCCCcEEEEeecCC----------------------------------------
Confidence 66666666677777776 7899999999999877654211
Q ss_pred ecCcceEEecCCcEEEEeecCccccCCCceEEEEECCCCcEEEEeCC------CeEEEEcCC-------C-CeeeeeecC
Q 003171 393 QRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGMIWTGGAN------GLLLQWDPN-------G-NRLQDFQYL 458 (842)
Q Consensus 393 ~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~al~~s~dg~l~Sgs~D------gtIrlWD~~-------g-~~l~~l~~H 458 (842)
.|..+.|+.+|.++..+.| +.|-++|+. + +++..+..+
T Consensus 95 ----------------------------~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~ 146 (327)
T KOG0643|consen 95 ----------------------------PVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTP 146 (327)
T ss_pred ----------------------------eeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCC
Confidence 1223345566665544444 467778773 2 346666667
Q ss_pred CccEEEE--EecCCEEEEEecCcEEEEEeCC-C-cccccccccccCEEEEE--eCCCEEEEEcCCCCeeeccccC
Q 003171 459 PFAVQCL--CTFGSQIWVGYMNGIVQVLDLE-G-NLLGGWVAHSSPVIKMA--VGAGYIFTLANHGGIRGWNVTS 527 (842)
Q Consensus 459 ~~~V~sl--s~dG~~LasGs~DgtIrlWD~~-g-~~i~~l~gH~~~V~sla--~dg~~l~S~S~DgtIrvWd~~~ 527 (842)
.+.+++. .+.+++|++|..||.|..||++ | +++.+-.-|+..|+.|. +|..+.+++|.|.+.++||+.+
T Consensus 147 ~skit~a~Wg~l~~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~t 221 (327)
T KOG0643|consen 147 DSKITSALWGPLGETIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRT 221 (327)
T ss_pred ccceeeeeecccCCEEEEecCCCcEEEEEcccCceeeechhhhccccccccccCCcceEEecccCccceeeeccc
Confidence 7777765 4679999999999999999997 5 46788899999999986 5899999999999999999765
|
|
| >KOG0270 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.4e-14 Score=155.56 Aligned_cols=228 Identities=16% Similarity=0.147 Sum_probs=154.0
Q ss_pred CCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEE------------------ecccCCcEEEEEEecCCC--EEEeeCC
Q 003171 202 ASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLS------------------WQAHRGPVLSLCISSYGD--LWSGSEG 261 (842)
Q Consensus 202 dg~~LaSGs~DGtIrlWdl~~g~~~~~~~~~~~~~------------------l~gH~~~V~slafs~dG~--L~SgS~D 261 (842)
.|+++|.|+.|-.|.|||+.-.. ......+ -+||+.+|.+|++..+-+ |+|||.|
T Consensus 191 ~gNyvAiGtmdp~IeIWDLDI~d-----~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD 265 (463)
T KOG0270|consen 191 AGNYVAIGTMDPEIEIWDLDIVD-----AVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSAD 265 (463)
T ss_pred CcceEEEeccCceeEEecccccc-----ccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCC
Confidence 46799999999999999986431 1111111 247999999999987755 8999999
Q ss_pred CcEEEEeCCCccceeecCCCceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcCCCC-EEEEeC-CCcEEEEEc
Q 003171 262 GGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRA-KVWSAG-FLSFALWDA 339 (842)
Q Consensus 262 gtIrvWd~~t~~~~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~-~v~s~s-~~tI~lWD~ 339 (842)
.||++||++++++..++..+ ..+|.++...+... .+.+|+ +++++|.|.
T Consensus 266 ~TV~lWD~~~g~p~~s~~~~-----------------------------~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~ 316 (463)
T KOG0270|consen 266 KTVKLWDVDTGKPKSSITHH-----------------------------GKKVQTLEWHPYEPSVLLSGSYDGTVALKDC 316 (463)
T ss_pred ceEEEEEcCCCCcceehhhc-----------------------------CCceeEEEecCCCceEEEeccccceEEeeec
Confidence 99999999987765444322 33455555544333 455666 578999998
Q ss_pred cCCcEEEEeecCCceEeeeecccCCCcccccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEeecCccccCC
Q 003171 340 RTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDN 419 (842)
Q Consensus 340 ~tg~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~ 419 (842)
+.-.. .... |+- .
T Consensus 317 R~~~~-------s~~~---------------------wk~---------------------------------------~ 329 (463)
T KOG0270|consen 317 RDPSN-------SGKE---------------------WKF---------------------------------------D 329 (463)
T ss_pred cCccc-------cCce---------------------EEe---------------------------------------c
Confidence 63110 0000 000 0
Q ss_pred CceEEEEECCCC--cEEEEeCCCeEEEEcC--CCCeeeeeecCCccEEEEEecC---CEEEEEecCcEEEEEeCCCcccc
Q 003171 420 RRTEALTTSIDG--MIWTGGANGLLLQWDP--NGNRLQDFQYLPFAVQCLCTFG---SQIWVGYMNGIVQVLDLEGNLLG 492 (842)
Q Consensus 420 ~~v~al~~s~dg--~l~Sgs~DgtIrlWD~--~g~~l~~l~~H~~~V~sls~dG---~~LasGs~DgtIrlWD~~g~~i~ 492 (842)
+.|+.+++.+.. .+++++.||+|+=+|+ .|+++-+++.|...|.+|+..+ ..+++++.|++|+||++.+..-+
T Consensus 330 g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~ 409 (463)
T KOG0270|consen 330 GEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPK 409 (463)
T ss_pred cceEEEEecCCCceeEEEecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeeccccceEEEEeecCCCCc
Confidence 112233333332 3567889999999999 3799999999999999998754 48999999999999998743322
Q ss_pred ccccccc---CEEEEEeCC---CEEEEEcCCCCeeeccccCCCC
Q 003171 493 GWVAHSS---PVIKMAVGA---GYIFTLANHGGIRGWNVTSPGP 530 (842)
Q Consensus 493 ~l~gH~~---~V~sla~dg---~~l~S~S~DgtIrvWd~~~~~~ 530 (842)
.-..|.- ...|.+.++ ..++.|+..+.+|+||+.+..+
T Consensus 410 ~v~~~~~~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~~~ 453 (463)
T KOG0270|consen 410 SVKEHSFKLGRLHCFALDPDVAFTLAFGGEKAVLRVWDIFTNSP 453 (463)
T ss_pred ccccccccccceeecccCCCcceEEEecCccceEEEeecccChh
Confidence 2333432 234455443 4677888888999999876544
|
|
| >KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.61 E-value=8.1e-15 Score=153.76 Aligned_cols=257 Identities=12% Similarity=0.120 Sum_probs=165.2
Q ss_pred EEecccCCcEEEEEEecCC--CEEEeeCCCcEEEEeCCCccceeecCCCceeeeEEEEeeceeecccceeccceeeeecC
Q 003171 235 LSWQAHRGPVLSLCISSYG--DLWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTS 312 (842)
Q Consensus 235 ~~l~gH~~~V~slafs~dG--~L~SgS~DgtIrvWd~~t~~~~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~ 312 (842)
..|.||++.|.+++=.|.. .++|||.||.||+||+....+..++..+ .+
T Consensus 60 ~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~AH-----------------------------~G 110 (433)
T KOG0268|consen 60 GSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTFKAH-----------------------------EG 110 (433)
T ss_pred hhccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhheeecc-----------------------------cC
Confidence 3568999999999999975 3789999999999999764443333222 22
Q ss_pred CEEEEEEcCCCCEEEEeCCCcEEEEEccCCcEEEEeecCCceEeeeeccc-CCCcccccceEEEEEecCCCCccceeeeE
Q 003171 313 DIKNLLSDHSRAKVWSAGFLSFALWDARTRELLKVFNIDGQIENRVDMSL-LPDFAMEDEFKTKIVTSSKKDKAQSSFGF 391 (842)
Q Consensus 313 ~v~~las~~~~~~v~s~s~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~-~~~~~~~~~~~~~~~s~~~~~~~~~s~~~ 391 (842)
-|+-++.+. +..+.+|.|++|+.|.+.- .+++++.+.+... .++... ...+ ..+. . .+..
T Consensus 111 ~V~Gi~v~~-~~~~tvgdDKtvK~wk~~~-~p~~tilg~s~~~-gIdh~~~~~~F-----------aTcG---e--~i~I 171 (433)
T KOG0268|consen 111 LVRGICVTQ-TSFFTVGDDKTVKQWKIDG-PPLHTILGKSVYL-GIDHHRKNSVF-----------ATCG---E--QIDI 171 (433)
T ss_pred ceeeEEecc-cceEEecCCcceeeeeccC-Ccceeeecccccc-ccccccccccc-----------cccC---c--eeee
Confidence 344555543 5566667789999998764 4556665443221 000000 0000 0000 0 0112
Q ss_pred eecCcceEEecCCcEEEEeecCccccCCCceEEEEECCCCc--EEEEeCCCeEEEEcC-CCCeeeeeecCCccEEEE--E
Q 003171 392 FQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGM--IWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQCL--C 466 (842)
Q Consensus 392 ~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~al~~s~dg~--l~Sgs~DgtIrlWD~-~g~~l~~l~~H~~~V~sl--s 466 (842)
|+..+...+ ..+.=....+.++.|+|-.+ |++|.+|++|.|+|+ .+..++.... .-.-+.| .
T Consensus 172 WD~~R~~Pv------------~smswG~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi~-~mRTN~Iswn 238 (433)
T KOG0268|consen 172 WDEQRDNPV------------SSMSWGADSISSVKFNPVETSILASCASDRSIVLYDLRQASPLKKVIL-TMRTNTICWN 238 (433)
T ss_pred cccccCCcc------------ceeecCCCceeEEecCCCcchheeeeccCCceEEEecccCCccceeee-eccccceecC
Confidence 221110000 00111224566788888765 678889999999999 6766654432 1122344 4
Q ss_pred ecCCEEEEEecCcEEEEEeCC--CcccccccccccCEEEEEe--CCCEEEEEcCCCCeeeccccCCCCCcchhhhhhccc
Q 003171 467 TFGSQIWVGYMNGIVQVLDLE--GNLLGGWVAHSSPVIKMAV--GAGYIFTLANHGGIRGWNVTSPGPLDSILCKELAGK 542 (842)
Q Consensus 467 ~dG~~LasGs~DgtIrlWD~~--g~~i~~l~gH~~~V~sla~--dg~~l~S~S~DgtIrvWd~~~~~~~d~~l~~~l~~r 542 (842)
|.+-.+.+|++|..++.+|.. ...+.+..+|.++|.+|++ -|+-++|||.|++|||+.+.- ..+|
T Consensus 239 PeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsptG~EfvsgsyDksIRIf~~~~-----------~~SR 307 (433)
T KOG0268|consen 239 PEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSPTGQEFVSGSYDKSIRIFPVNH-----------GHSR 307 (433)
T ss_pred ccccceeeccccccceehhhhhhcccchhhcccceeEEEeccCCCcchhccccccceEEEeecCC-----------Ccch
Confidence 545578889999999999987 5689999999999999985 577899999999999998643 3456
Q ss_pred ccccccccceeEEEEEEEeCCC
Q 003171 543 EFLYTRMENLKILAGTWNVGQG 564 (842)
Q Consensus 543 ~~~y~~~~~~~i~~~twNv~~~ 564 (842)
+.+|++... +|+++-|.+..+
T Consensus 308 diYhtkRMq-~V~~Vk~S~Dsk 328 (433)
T KOG0268|consen 308 DIYHTKRMQ-HVFCVKYSMDSK 328 (433)
T ss_pred hhhhHhhhh-eeeEEEEecccc
Confidence 666665444 689999998754
|
|
| >KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription] | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.5e-13 Score=154.46 Aligned_cols=111 Identities=15% Similarity=0.205 Sum_probs=91.5
Q ss_pred cCCCceEEEEECCCCc-EEEEeCC-----CeEEEEcC-CCCeeeeeecCCccEEEEE--ecCCEEEEEecCcEEEEEeCC
Q 003171 417 DDNRRTEALTTSIDGM-IWTGGAN-----GLLLQWDP-NGNRLQDFQYLPFAVQCLC--TFGSQIWVGYMNGIVQVLDLE 487 (842)
Q Consensus 417 ~~~~~v~al~~s~dg~-l~Sgs~D-----gtIrlWD~-~g~~l~~l~~H~~~V~sls--~dG~~LasGs~DgtIrlWD~~ 487 (842)
+|...|.+++.+|+|. ++|++.. -.|+||+. +=...+.+.+|+-.|+-++ +||++|++.+.|+++.||...
T Consensus 523 GHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~FSpdg~~LLsvsRDRt~sl~~~~ 602 (764)
T KOG1063|consen 523 GHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRLAFSPDGRYLLSVSRDRTVSLYEVQ 602 (764)
T ss_pred cCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheecccceEEEEEEECCCCcEEEEeecCceEEeeeee
Confidence 4777899999999999 5676643 25999999 4566778999999999875 589999999999999999864
Q ss_pred -Cc----ccccccccccCEEEEE--eCCCEEEEEcCCCCeeeccccC
Q 003171 488 -GN----LLGGWVAHSSPVIKMA--VGAGYIFTLANHGGIRGWNVTS 527 (842)
Q Consensus 488 -g~----~i~~l~gH~~~V~sla--~dg~~l~S~S~DgtIrvWd~~~ 527 (842)
+. -....+.|+-.||.-. +++.+++|+|.|++|++|....
T Consensus 603 ~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~~~ 649 (764)
T KOG1063|consen 603 EDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWEEPD 649 (764)
T ss_pred cccchhhhhccccccceEEEEcccCcccceeEEecCCceEEEEeccC
Confidence 21 2345789999999876 5888999999999999998643
|
|
| >KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.59 E-value=3.7e-14 Score=145.16 Aligned_cols=209 Identities=21% Similarity=0.258 Sum_probs=139.0
Q ss_pred ccCCcEEEEEEecC-CC-EEEeeCCCcEEEEeCCCccc-eeec-CCCceeeeEEEEeeceeecccceeccceeeeecCCE
Q 003171 239 AHRGPVLSLCISSY-GD-LWSGSEGGGIKIWPWEAIEK-ALSL-KPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDI 314 (842)
Q Consensus 239 gH~~~V~slafs~d-G~-L~SgS~DgtIrvWd~~t~~~-~l~~-~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v 314 (842)
-|.+.|+++.+.+. |+ ++||+.||.|-|||++.... .-+. .....+.. + ..+.++... .+
T Consensus 41 ~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v-----------~-~~h~~~Hky----~i 104 (397)
T KOG4283|consen 41 PHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIV-----------A-KQHENGHKY----AI 104 (397)
T ss_pred cCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeec-----------c-ccCCcccee----ee
Confidence 57899999999884 66 78999999999999975320 0000 00000000 0 001111111 11
Q ss_pred EEE-EEcCCCCEEEEeC-CCcEEEEEccCCcEEEEeecCCceEeeeecccCCCcccccceEEEEEecCCCCccceeeeEe
Q 003171 315 KNL-LSDHSRAKVWSAG-FLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFF 392 (842)
Q Consensus 315 ~~l-as~~~~~~v~s~s-~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~ 392 (842)
..+ -...+.+.+.+++ |.++|+||..|-+...+|+..+.+ .+-++++.+
T Consensus 105 ss~~WyP~DtGmFtssSFDhtlKVWDtnTlQ~a~~F~me~~V-YshamSp~a---------------------------- 155 (397)
T KOG4283|consen 105 SSAIWYPIDTGMFTSSSFDHTLKVWDTNTLQEAVDFKMEGKV-YSHAMSPMA---------------------------- 155 (397)
T ss_pred eeeEEeeecCceeecccccceEEEeecccceeeEEeecCcee-ehhhcChhh----------------------------
Confidence 111 1233566666766 579999999998776666654432 111111100
Q ss_pred ecCcceEEecCCcEEEEeecCccccCCCceEEEEECCCCcEEEEeCCCeEEEEcC-CCCeeeeeecCCccEEEEEe--cC
Q 003171 393 QRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGMIWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQCLCT--FG 469 (842)
Q Consensus 393 ~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~al~~s~dg~l~Sgs~DgtIrlWD~-~g~~l~~l~~H~~~V~sls~--dG 469 (842)
. ..-.+++|..|-.|+|-|+ .|.+-+++.||...|.++.. ..
T Consensus 156 ----------------------------------~-sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vlaV~Wsp~~ 200 (397)
T KOG4283|consen 156 ----------------------------------M-SHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVLAVEWSPSS 200 (397)
T ss_pred ----------------------------------h-cceEEEEecCCCcEEEEeccCCcceeeeccccCceEEEEeccCc
Confidence 0 0012677888889999999 79999999999999999964 44
Q ss_pred C-EEEEEecCcEEEEEeCC---C----------c---ccccccccccCEEEEEe--CCCEEEEEcCCCCeeeccccC
Q 003171 470 S-QIWVGYMNGIVQVLDLE---G----------N---LLGGWVAHSSPVIKMAV--GAGYIFTLANHGGIRGWNVTS 527 (842)
Q Consensus 470 ~-~LasGs~DgtIrlWD~~---g----------~---~i~~l~gH~~~V~sla~--dg~~l~S~S~DgtIrvWd~~~ 527 (842)
+ .||+|+.||+||+||+. | + .+++-.+|.+.|.++++ |+.++++.++|..+|+|+..+
T Consensus 201 e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~~~ 277 (397)
T KOG4283|consen 201 EWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWNMES 277 (397)
T ss_pred eeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccCccceEEeeccc
Confidence 4 78899999999999964 2 1 23456688899999985 899999999999999999654
|
|
| >KOG1273 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.58 E-value=3e-13 Score=139.74 Aligned_cols=271 Identities=16% Similarity=0.149 Sum_probs=161.5
Q ss_pred CeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCCC-EEEeeCCCcEEEEeCCC
Q 003171 193 SVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEA 271 (842)
Q Consensus 193 ~V~~la~dpdg~~LaSGs~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~~t 271 (842)
...|+.|++-|.+||+|..||.|.+||+.+. ...+.+.+|..+|+|+++|+||+ |+|+|.|..|++||+..
T Consensus 25 ~a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~--------~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~ 96 (405)
T KOG1273|consen 25 LAECCQFSRWGDYLAVGCANGRVVIYDFDTF--------RIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLK 96 (405)
T ss_pred ccceEEeccCcceeeeeccCCcEEEEEcccc--------chhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccC
Confidence 4889999999999999999999999999985 45567899999999999999998 78999999999999966
Q ss_pred ccceeecCCCceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcCCCCEEEEeCCCcEEEEEccCCcEEEEeecC
Q 003171 272 IEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGFLSFALWDARTRELLKVFNID 351 (842)
Q Consensus 272 ~~~~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s~~tI~lWD~~tg~~l~~l~~~ 351 (842)
+.......-. ..+.+....+...-++++.-= ...-.+-+...+.. .+|..
T Consensus 97 gs~l~rirf~-------------------spv~~~q~hp~k~n~~va~~~---------~~sp~vi~~s~~~h-~~Lp~- 146 (405)
T KOG1273|consen 97 GSPLKRIRFD-------------------SPVWGAQWHPRKRNKCVATIM---------EESPVVIDFSDPKH-SVLPK- 146 (405)
T ss_pred CCceeEEEcc-------------------CccceeeeccccCCeEEEEEe---------cCCcEEEEecCCce-eeccC-
Confidence 5422111000 000000000111111111100 00001111111000 11110
Q ss_pred CceEeeeecccCCCcccccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEeecCc------cccC-CCceEE
Q 003171 352 GQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGG------FGDD-NRRTEA 424 (842)
Q Consensus 352 ~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~------~~~~-~~~v~a 424 (842)
+.+.... .+.+ ..-|..++..+++|+..|-..+-..-+ +.-. ...|..
T Consensus 147 -----------d~d~dln-------~sas-------~~~fdr~g~yIitGtsKGkllv~~a~t~e~vas~rits~~~IK~ 201 (405)
T KOG1273|consen 147 -----------DDDGDLN-------SSAS-------HGVFDRRGKYIITGTSKGKLLVYDAETLECVASFRITSVQAIKQ 201 (405)
T ss_pred -----------CCccccc-------cccc-------cccccCCCCEEEEecCcceEEEEecchheeeeeeeechheeeeE
Confidence 0000000 0000 012334456778888777554432111 1111 245666
Q ss_pred EEECCCCc-EEEEeCCCeEEEEcCC-----C---C--eeeeeec---CCccE-EEEEecCCEEEEEec-CcEEEEEeCC-
Q 003171 425 LTTSIDGM-IWTGGANGLLLQWDPN-----G---N--RLQDFQY---LPFAV-QCLCTFGSQIWVGYM-NGIVQVLDLE- 487 (842)
Q Consensus 425 l~~s~dg~-l~Sgs~DgtIrlWD~~-----g---~--~l~~l~~---H~~~V-~sls~dG~~LasGs~-DgtIrlWD~~- 487 (842)
+.++..|. ++.-+.|..||.+++. | + ..+.++. -..+= .|++-+|.|+.+|+. -..++||...
T Consensus 202 I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~ 281 (405)
T KOG1273|consen 202 IIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSGDGEYVCAGSARAHALYIWEKSI 281 (405)
T ss_pred EEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhheeecCCccEEEeccccceeEEEEecCC
Confidence 88888888 7899999999999873 2 1 1122221 01111 134557889988885 6789999987
Q ss_pred Ccccccccccc-cCEEEEEeCCCE--EEEEcCCCCeeeccccC
Q 003171 488 GNLLGGWVAHS-SPVIKMAVGAGY--IFTLANHGGIRGWNVTS 527 (842)
Q Consensus 488 g~~i~~l~gH~-~~V~sla~dg~~--l~S~S~DgtIrvWd~~~ 527 (842)
|.+++.|.|.. .....|.+++-. ++|. ..|+|++|....
T Consensus 282 GsLVKILhG~kgE~l~DV~whp~rp~i~si-~sg~v~iw~~~~ 323 (405)
T KOG1273|consen 282 GSLVKILHGTKGEELLDVNWHPVRPIIASI-ASGVVYIWAVVQ 323 (405)
T ss_pred cceeeeecCCchhheeecccccceeeeeec-cCCceEEEEeec
Confidence 99999998887 455667776543 5555 678999998644
|
|
| >KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.57 E-value=2.3e-13 Score=139.35 Aligned_cols=292 Identities=18% Similarity=0.182 Sum_probs=179.3
Q ss_pred CCCeEEEEEcC-CCCEEEEEeCCCcEEEEECCCCcc-C-CCCCc--cee---EEecccCCcEEEEEEecC--CCEEEeeC
Q 003171 191 VSSVMCMVGDE-ASGVVWSGHRDGRIMCWKMNARLL-D-SDDGF--GEV---LSWQAHRGPVLSLCISSY--GDLWSGSE 260 (842)
Q Consensus 191 ~~~V~~la~dp-dg~~LaSGs~DGtIrlWdl~~g~~-~-~~~~~--~~~---~~l~gH~~~V~slafs~d--G~L~SgS~ 260 (842)
.++|.+|.+++ .|+++.||+.||.|-+||++.... + ..-.. .++ ..-.+|+-+|.++-|=|- |-+.|+|.
T Consensus 43 gGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFtssSF 122 (397)
T KOG4283|consen 43 GGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTSSSF 122 (397)
T ss_pred CCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeecccc
Confidence 78899999998 689999999999999999987420 0 00000 010 112478888999988874 44679999
Q ss_pred CCcEEEEeCCCccceeecCCCceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcCCCCEEEEeCC-CcEEEEEc
Q 003171 261 GGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGF-LSFALWDA 339 (842)
Q Consensus 261 DgtIrvWd~~t~~~~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s~-~tI~lWD~ 339 (842)
|.|+||||..|.+....+..++.. . .| ....++.. ...|+.+.+ -.|+|-|+
T Consensus 123 DhtlKVWDtnTlQ~a~~F~me~~V-Y------------sh------------amSp~a~s--HcLiA~gtr~~~VrLCDi 175 (397)
T KOG4283|consen 123 DHTLKVWDTNTLQEAVDFKMEGKV-Y------------SH------------AMSPMAMS--HCLIAAGTRDVQVRLCDI 175 (397)
T ss_pred cceEEEeecccceeeEEeecCcee-e------------hh------------hcChhhhc--ceEEEEecCCCcEEEEec
Confidence 999999999886555444332210 0 00 01112221 234555554 37999999
Q ss_pred cCCcEEEEeecCCceEeeeecccCCCcccccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEE-ee-------
Q 003171 340 RTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRV-AA------- 411 (842)
Q Consensus 340 ~tg~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v-~~------- 411 (842)
++|.+-.+|++|.+.+-.++.++..+.-. .+++ +.+.+.+|+..+ +.|.+++ ..
T Consensus 176 ~SGs~sH~LsGHr~~vlaV~Wsp~~e~vL--------atgs----aDg~irlWDiRr------asgcf~~lD~hn~k~~p 237 (397)
T KOG4283|consen 176 ASGSFSHTLSGHRDGVLAVEWSPSSEWVL--------ATGS----ADGAIRLWDIRR------ASGCFRVLDQHNTKRPP 237 (397)
T ss_pred cCCcceeeeccccCceEEEEeccCceeEE--------EecC----CCceEEEEEeec------ccceeEEeecccCccCc
Confidence 99999999999887554555554332211 1111 111223333211 0011111 00
Q ss_pred -cCccccCCCceEEEEECCCCc-EEEEeCCCeEEEEcC-CCC-eeeeee--cCCcc----EEEEEecCCEEEEEecCcEE
Q 003171 412 -KGGFGDDNRRTEALTTSIDGM-IWTGGANGLLLQWDP-NGN-RLQDFQ--YLPFA----VQCLCTFGSQIWVGYMNGIV 481 (842)
Q Consensus 412 -~g~~~~~~~~v~al~~s~dg~-l~Sgs~DgtIrlWD~-~g~-~l~~l~--~H~~~----V~sls~dG~~LasGs~DgtI 481 (842)
..+-..|.++|..++++.||. +|+++.|..+++|+. +|+ -++.+- .|... +.--+.+...++---.++++
T Consensus 238 ~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~~~G~ntl~~~g~~~~n~~~~~~~~~~~~~s~vfv~~p~~~~l 317 (397)
T KOG4283|consen 238 ILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWNMESGRNTLREFGPIIHNQTTSFAVHIQSMDSDVFVLFPNDGSL 317 (397)
T ss_pred cccccccccceeeeeeecccchhhhhccCccceEEeecccCcccccccccccccccccceEEEeecccceEEEEecCCeE
Confidence 001234778899999999987 899999999999998 664 233321 12221 11002222222222345889
Q ss_pred EEEeC-CCcccccccccccCEEEEEe--CCCEEEEEcCCCCeeeccccC
Q 003171 482 QVLDL-EGNLLGGWVAHSSPVIKMAV--GAGYIFTLANHGGIRGWNVTS 527 (842)
Q Consensus 482 rlWD~-~g~~i~~l~gH~~~V~sla~--dg~~l~S~S~DgtIrvWd~~~ 527 (842)
.|+++ +|..++.|.+|-..|.+-+. +=+...+++-|+.|--|-...
T Consensus 318 all~~~sgs~ir~l~~h~k~i~c~~~~~~fq~~~tg~~d~ni~~w~p~l 366 (397)
T KOG4283|consen 318 ALLNLLEGSFVRRLSTHLKRINCAAYRPDFEQCFTGDMNGNIYMWSPAL 366 (397)
T ss_pred EEEEccCceEEEeeecccceeeEEeecCchhhhhccccCCccccccccc
Confidence 99986 58889999999888888775 445788999999999998643
|
|
| >KOG1274 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.57 E-value=6.6e-13 Score=153.51 Aligned_cols=233 Identities=19% Similarity=0.196 Sum_probs=166.6
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCCCEEEeeCCCcEEEEeCC
Q 003171 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGDLWSGSEGGGIKIWPWE 270 (842)
Q Consensus 191 ~~~V~~la~dpdg~~LaSGs~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~L~SgS~DgtIrvWd~~ 270 (842)
+..-+.+.++|+|..|.+++.||.||+|+..... .+..++.-|...|.+++... +.|++|+.+++|.++...
T Consensus 13 t~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~-------e~P~ti~~~g~~v~~ia~~s-~~f~~~s~~~tv~~y~fp 84 (933)
T KOG1274|consen 13 TGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDE-------EEPETIDISGELVSSIACYS-NHFLTGSEQNTVLRYKFP 84 (933)
T ss_pred cCceEEEEEcCCCCEEEEecCCCceEEeecCCcc-------cCCchhhccCceeEEEeecc-cceEEeeccceEEEeeCC
Confidence 5567889999999999999999999999866531 11222222778898888765 379999999999999986
Q ss_pred CccceeecCCCceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcCCCCEEEEeCCC-cEEEEEccCCcEEEEee
Q 003171 271 AIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGFL-SFALWDARTRELLKVFN 349 (842)
Q Consensus 271 t~~~~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s~~-tI~lWD~~tg~~l~~l~ 349 (842)
.++..- -+. ..+-.++.++++.+|..++.|++. .|++-++.+....+++
T Consensus 85 s~~~~~-------iL~----------------------Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~l- 134 (933)
T KOG1274|consen 85 SGEEDT-------ILA----------------------RFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVL- 134 (933)
T ss_pred CCCccc-------eee----------------------eeeccceEEEEecCCcEEEeecCceeEEEEeccccchheee-
Confidence 643210 011 113467888888888888888864 6877776554333322
Q ss_pred cCCceEeeeecccCCCcccccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEeecCccccCCCceEEEEECC
Q 003171 350 IDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSI 429 (842)
Q Consensus 350 ~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~al~~s~ 429 (842)
.+|...|.+|.++|
T Consensus 135 ------------------------------------------------------------------rgh~apVl~l~~~p 148 (933)
T KOG1274|consen 135 ------------------------------------------------------------------RGHDAPVLQLSYDP 148 (933)
T ss_pred ------------------------------------------------------------------cccCCceeeeeEcC
Confidence 23445567788889
Q ss_pred CCc-EEEEeCCCeEEEEcC-CCCeeeeeec-------CCccEEE-E--EecCCEEEEEecCcEEEEEeCCC-ccccccc-
Q 003171 430 DGM-IWTGGANGLLLQWDP-NGNRLQDFQY-------LPFAVQC-L--CTFGSQIWVGYMNGIVQVLDLEG-NLLGGWV- 495 (842)
Q Consensus 430 dg~-l~Sgs~DgtIrlWD~-~g~~l~~l~~-------H~~~V~s-l--s~dG~~LasGs~DgtIrlWD~~g-~~i~~l~- 495 (842)
.+. |++.+.||+|++||+ ++.+..++.+ -...+.+ + .|+|..++.-..|++|++++..| .....+.
T Consensus 149 ~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~ 228 (933)
T KOG1274|consen 149 KGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRD 228 (933)
T ss_pred CCCEEEEEecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeecc
Confidence 888 688889999999999 7888777764 1123332 2 46777777778999999999874 3333332
Q ss_pred -ccccCEEEEE--eCCCEEEEEcCCCCeeeccccC
Q 003171 496 -AHSSPVIKMA--VGAGYIFTLANHGGIRGWNVTS 527 (842)
Q Consensus 496 -gH~~~V~sla--~dg~~l~S~S~DgtIrvWd~~~ 527 (842)
-|...+..+. +.|+|||+++.||.|-|||+.+
T Consensus 229 ~~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t 263 (933)
T KOG1274|consen 229 KLSSSKFSDLQWSPNGKYIAASTLDGQILVWNVDT 263 (933)
T ss_pred cccccceEEEEEcCCCcEEeeeccCCcEEEEeccc
Confidence 3444455555 6899999999999999999876
|
|
| >TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.2e-12 Score=140.98 Aligned_cols=216 Identities=14% Similarity=0.151 Sum_probs=140.0
Q ss_pred CEEEEEeCCCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCCC-E-EEeeCCCcEEEEeCCCccceeecCCC
Q 003171 204 GVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-L-WSGSEGGGIKIWPWEAIEKALSLKPE 281 (842)
Q Consensus 204 ~~LaSGs~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L-~SgS~DgtIrvWd~~t~~~~l~~~~~ 281 (842)
.+++|++.|+++++||+.++ +....+.+|.. +.+++|+|+|+ + ++++.|++|++||..+++....+..
T Consensus 2 ~~~~s~~~d~~v~~~d~~t~--------~~~~~~~~~~~-~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~- 71 (300)
T TIGR03866 2 KAYVSNEKDNTISVIDTATL--------EVTRTFPVGQR-PRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPS- 71 (300)
T ss_pred cEEEEecCCCEEEEEECCCC--------ceEEEEECCCC-CCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccC-
Confidence 57889999999999999886 55666776654 67899999997 5 5778899999999976432211110
Q ss_pred ceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcCCCCEEEEeC--CCcEEEEEccCCcEEEEeecCCceEeeee
Q 003171 282 ERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG--FLSFALWDARTRELLKVFNIDGQIENRVD 359 (842)
Q Consensus 282 ~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s--~~tI~lWD~~tg~~l~~l~~~~~~~~~~~ 359 (842)
......++.++++..++.+. ++.+++||+.+++++..+...
T Consensus 72 -----------------------------~~~~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~~-------- 114 (300)
T TIGR03866 72 -----------------------------GPDPELFALHPNGKILYIANEDDNLVTVIDIETRKVLAEIPVG-------- 114 (300)
T ss_pred -----------------------------CCCccEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeCC--------
Confidence 01123455666676665443 578999999887654433210
Q ss_pred cccCCCcccccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEeecCccccCCCceEEEEECCCCc-EEEEeC
Q 003171 360 MSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGM-IWTGGA 438 (842)
Q Consensus 360 ~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~al~~s~dg~-l~Sgs~ 438 (842)
..+..++++|||. +++++.
T Consensus 115 ------------------------------------------------------------~~~~~~~~~~dg~~l~~~~~ 134 (300)
T TIGR03866 115 ------------------------------------------------------------VEPEGMAVSPDGKIVVNTSE 134 (300)
T ss_pred ------------------------------------------------------------CCcceEEECCCCCEEEEEec
Confidence 0112466788887 556665
Q ss_pred CC-eEEEEcC-CCCeeeeeecCCccEE--EEEecCCEEEEEe-cCcEEEEEeCC-Ccccccccccc-----cCE--EEEE
Q 003171 439 NG-LLLQWDP-NGNRLQDFQYLPFAVQ--CLCTFGSQIWVGY-MNGIVQVLDLE-GNLLGGWVAHS-----SPV--IKMA 505 (842)
Q Consensus 439 Dg-tIrlWD~-~g~~l~~l~~H~~~V~--sls~dG~~LasGs-~DgtIrlWD~~-g~~i~~l~gH~-----~~V--~sla 505 (842)
++ .+..||. +++++..+..+ ..+. +++++|++|++++ .++.|++||++ ++++..+..+. ..+ ..++
T Consensus 135 ~~~~~~~~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 213 (300)
T TIGR03866 135 TTNMAHFIDTKTYEIVDNVLVD-QRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIK 213 (300)
T ss_pred CCCeEEEEeCCCCeEEEEEEcC-CCccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceE
Confidence 54 5677899 56665544322 2233 3456898886554 59999999997 56655554332 111 2343
Q ss_pred --eCCCEEE-EEcCCCCeeeccccC
Q 003171 506 --VGAGYIF-TLANHGGIRGWNVTS 527 (842)
Q Consensus 506 --~dg~~l~-S~S~DgtIrvWd~~~ 527 (842)
++++.++ +.+.+++|.+||+.+
T Consensus 214 ~s~dg~~~~~~~~~~~~i~v~d~~~ 238 (300)
T TIGR03866 214 LTKDGKTAFVALGPANRVAVVDAKT 238 (300)
T ss_pred ECCCCCEEEEEcCCCCeEEEEECCC
Confidence 5777754 445677899999765
|
Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol. |
| >KOG0649 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.56 E-value=3.7e-13 Score=134.74 Aligned_cols=245 Identities=15% Similarity=0.220 Sum_probs=170.0
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCcc-CCCC-CcceeEEecccCCcEEEEEEecCCCEEEeeCCCcEEEEeC
Q 003171 192 SSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLL-DSDD-GFGEVLSWQAHRGPVLSLCISSYGDLWSGSEGGGIKIWPW 269 (842)
Q Consensus 192 ~~V~~la~dpdg~~LaSGs~DGtIrlWdl~~g~~-~~~~-~~~~~~~l~gH~~~V~slafs~dG~L~SgS~DgtIrvWd~ 269 (842)
..|.+-+++|-+++++.|+.+|+|-+..+..-.. ..+. .-..+...++|.++|+.|+|. |..|+||+. |.|+-|.+
T Consensus 11 ~tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~-d~~Lls~gd-G~V~gw~W 88 (325)
T KOG0649|consen 11 NTVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFH-DDFLLSGGD-GLVYGWEW 88 (325)
T ss_pred HHHHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeee-hhheeeccC-ceEEEeee
Confidence 3566678889999999999999999998754210 0011 112345569999999999998 445778865 99999999
Q ss_pred CCccceeecCCCceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcCC-CCEEEEeCCCcEEEEEccCCcEEEEe
Q 003171 270 EAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHS-RAKVWSAGFLSFALWDARTRELLKVF 348 (842)
Q Consensus 270 ~t~~~~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~-~~~v~s~s~~tI~lWD~~tg~~l~~l 348 (842)
...+++....+ .+.+...-. ...++-++++.+..++. +..+..++|..+.-||+++|+..++|
T Consensus 89 ~E~~es~~~K~-------------lwe~~~P~~---~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~ 152 (325)
T KOG0649|consen 89 NEEEESLATKR-------------LWEVKIPMQ---VDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREY 152 (325)
T ss_pred hhhhhhccchh-------------hhhhcCccc---cCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEE
Confidence 65332211100 000000000 11234567888888754 45666777889999999999998888
Q ss_pred ecCCceEeeeecccCCCcccccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEeecCccccCCCceEEEEE-
Q 003171 349 NIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTT- 427 (842)
Q Consensus 349 ~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~al~~- 427 (842)
.+|.... .+++-
T Consensus 153 rGHtDYv-------------------------------------------------------------------H~vv~R 165 (325)
T KOG0649|consen 153 RGHTDYV-------------------------------------------------------------------HSVVGR 165 (325)
T ss_pred cCCccee-------------------------------------------------------------------eeeeec
Confidence 7776532 11111
Q ss_pred CCCCcEEEEeCCCeEEEEcC-CCCeeeeeec---------C-CccEEEEEecCCEEEEEecCcEEEEEeCC-Ccc--ccc
Q 003171 428 SIDGMIWTGGANGLLLQWDP-NGNRLQDFQY---------L-PFAVQCLCTFGSQIWVGYMNGIVQVLDLE-GNL--LGG 493 (842)
Q Consensus 428 s~dg~l~Sgs~DgtIrlWD~-~g~~l~~l~~---------H-~~~V~sls~dG~~LasGs~DgtIrlWD~~-g~~--i~~ 493 (842)
+..++++||++||++|+||. ++++++++.. | ..+|.+++.+...|+.|+ ...+.||.+. ..+ +-.
T Consensus 166 ~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~~edWlvCGg-Gp~lslwhLrsse~t~vfp 244 (325)
T KOG0649|consen 166 NANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAVNEDWLVCGG-GPKLSLWHLRSSESTCVFP 244 (325)
T ss_pred ccCcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEeccCceEEecC-CCceeEEeccCCCceEEEe
Confidence 34678999999999999999 7899888753 2 246888888889998875 5679999987 444 444
Q ss_pred ccccccCEEEEEeCCCEEEEEcCCCCeeeccc
Q 003171 494 WVAHSSPVIKMAVGAGYIFTLANHGGIRGWNV 525 (842)
Q Consensus 494 l~gH~~~V~sla~dg~~l~S~S~DgtIrvWd~ 525 (842)
+.+| |.-+.++.+.+++++..+.|.-|.+
T Consensus 245 ipa~---v~~v~F~~d~vl~~G~g~~v~~~~l 273 (325)
T KOG0649|consen 245 IPAR---VHLVDFVDDCVLIGGEGNHVQSYTL 273 (325)
T ss_pred cccc---eeEeeeecceEEEeccccceeeeee
Confidence 4454 6667788889999998888888874
|
|
| >KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.56 E-value=3.9e-14 Score=156.24 Aligned_cols=79 Identities=23% Similarity=0.520 Sum_probs=67.9
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCCC-EEEeeCCCcEEEEeC
Q 003171 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPW 269 (842)
Q Consensus 191 ~~~V~~la~dpdg~~LaSGs~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~ 269 (842)
...|..++|.|-...|++++.||++++|++..........++.+.+|.||.++|.|++++++++ ++||+.||+||.|++
T Consensus 294 ~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I~~w~~ 373 (577)
T KOG0642|consen 294 DDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGTIRCWNL 373 (577)
T ss_pred hhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccCceeeeecc
Confidence 5678888998888999999999999999994321122346788999999999999999999998 899999999999997
|
|
| >KOG1539 consensus WD repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.2e-12 Score=149.89 Aligned_cols=334 Identities=11% Similarity=0.112 Sum_probs=210.1
Q ss_pred eEEEEec--CCEEEEe-c-CCCEEEEeCCCCccccccccccccCCCCCCCCCCeeeeeecCCCeEEEEEcCCCCEEEEEe
Q 003171 135 LRTIVCT--EEQLWAG-G-ENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGH 210 (842)
Q Consensus 135 ~~~l~~~--~~~l~~~-~-D~~vrvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~V~~la~dpdg~~LaSGs 210 (842)
+.+|.+. +..+.++ . .|.+-+||++.-..... ....| .++|..+.|-|..-.|+|++
T Consensus 247 VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~~v------------------~~nah-~~sv~~~~fl~~epVl~ta~ 307 (910)
T KOG1539|consen 247 VTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLINV------------------TRNAH-YGSVTGATFLPGEPVLVTAG 307 (910)
T ss_pred eeEEEeccCCCeeEEeccCCceEEEEEcCCCeeeee------------------eeccc-cCCcccceecCCCceEeecc
Confidence 3344443 5555553 3 36799999976433321 12233 55677777778888999999
Q ss_pred CCCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEe-cCCC-EEEeeCCCcEEEEeCCCcc--ce-----------
Q 003171 211 RDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCIS-SYGD-LWSGSEGGGIKIWPWEAIE--KA----------- 275 (842)
Q Consensus 211 ~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs-~dG~-L~SgS~DgtIrvWd~~t~~--~~----------- 275 (842)
.|...|+|=.+++. ..-+.++.-.||+.|-.+|.|- ..|. +.+++.|++.|..++-... +.
T Consensus 308 ~DnSlk~~vfD~~d----g~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~k 383 (910)
T KOG1539|consen 308 ADNSLKVWVFDSGD----GVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAK 383 (910)
T ss_pred CCCceeEEEeeCCC----CcchheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccc
Confidence 99999999776552 1113344557999999999997 5676 7899999999999874210 00
Q ss_pred -eecC-C---CceeeeEEEEeec-------------------eeecccceeccceeeeec------CCEEEEEEcCCCCE
Q 003171 276 -LSLK-P---EERHTAALIVERS-------------------YIDLRSHLSVNGFSSILT------SDIKNLLSDHSRAK 325 (842)
Q Consensus 276 -l~~~-~---~~~~~~~l~~~~s-------------------~~~l~~~~~~~~~~~~~s------~~v~~las~~~~~~ 325 (842)
+... . .-.....+..+.. .|.++.. +.+....-+. ..+++++.+.+|..
T Consensus 384 k~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~-~~G~~~L~~~~~~~~~~~~~av~vs~CGNF 462 (910)
T KOG1539|consen 384 KVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNK-TSGRHVLDPKRFKKDDINATAVCVSFCGNF 462 (910)
T ss_pred cccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCc-ccccEEecCccccccCcceEEEEEeccCce
Confidence 0000 0 0001111111110 0111110 1111111112 45788888999998
Q ss_pred EEEeCC-CcEEEEEccCCcEEEEeec---CCceEeeeecccCCCcccccceEEEEEecCCCCccceeeeEeecCcceEEe
Q 003171 326 VWSAGF-LSFALWDARTRELLKVFNI---DGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMG 401 (842)
Q Consensus 326 v~s~s~-~tI~lWD~~tg~~l~~l~~---~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g 401 (842)
+..|.. ++|-++++++|-..+.|.. |...+ ..++.-...+..+.+
T Consensus 463 ~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V-------------------------------~gla~D~~n~~~vsa 511 (910)
T KOG1539|consen 463 VFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEV-------------------------------TGLAVDGTNRLLVSA 511 (910)
T ss_pred EEEeccCCeEEEEEcccCeeecccccCccccCce-------------------------------eEEEecCCCceEEEc
Confidence 888764 6899999999988777731 11110 011111112234555
Q ss_pred cCCcEEEEeec--Ccccc---CCCceEEEEECC-CCcEEEEeCCCeEEEEcC-CCCeeeeeecCCccEEEE--EecCCEE
Q 003171 402 AADAVRRVAAK--GGFGD---DNRRTEALTTSI-DGMIWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQCL--CTFGSQI 472 (842)
Q Consensus 402 ~~~~v~~v~~~--g~~~~---~~~~v~al~~s~-dg~l~Sgs~DgtIrlWD~-~g~~l~~l~~H~~~V~sl--s~dG~~L 472 (842)
..+|+...|.- ..+.. -...+..+.... .+.++.+..|-.|++.|. +-+.++.|.||++.|+++ ++||++|
T Consensus 512 ~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrWl 591 (910)
T KOG1539|consen 512 GADGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRWL 591 (910)
T ss_pred cCcceEEEEecCCcceeeeeccCCCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhhccccceeeeEeCCCCcEE
Confidence 56676666651 12211 112233333332 245778888999999999 788999999999999977 4689999
Q ss_pred EEEecCcEEEEEeCC-CcccccccccccCEEEEE--eCCCEEEEEcCC-CCeeecc
Q 003171 473 WVGYMNGIVQVLDLE-GNLLGGWVAHSSPVIKMA--VGAGYIFTLANH-GGIRGWN 524 (842)
Q Consensus 473 asGs~DgtIrlWD~~-g~~i~~l~gH~~~V~sla--~dg~~l~S~S~D-gtIrvWd 524 (842)
++++.|++||+||+- |.++..+.- ..+..+|. +.|++|+++.-| ..|.+|-
T Consensus 592 isasmD~tIr~wDlpt~~lID~~~v-d~~~~sls~SPngD~LAT~Hvd~~gIylWs 646 (910)
T KOG1539|consen 592 ISASMDSTIRTWDLPTGTLIDGLLV-DSPCTSLSFSPNGDFLATVHVDQNGIYLWS 646 (910)
T ss_pred EEeecCCcEEEEeccCcceeeeEec-CCcceeeEECCCCCEEEEEEecCceEEEEE
Confidence 999999999999985 777776643 34555554 789999999988 7899996
|
|
| >KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown] | Back alignment and domain information |
|---|
Probab=99.55 E-value=9e-12 Score=135.71 Aligned_cols=294 Identities=17% Similarity=0.202 Sum_probs=183.6
Q ss_pred CCEEE-EecCCCEEEEeCCCCccccccccccccCCCCCCCCCCeeeeeecCCCeEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 003171 142 EEQLW-AGGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGHRDGRIMCWKM 220 (842)
Q Consensus 142 ~~~l~-~~~D~~vrvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~V~~la~dpdg~~LaSGs~DGtIrlWdl 220 (842)
...|. ...-+.+.+|+++....... ...|.. -. ..-|+|++|.++|.. +||.++|.|-||+.
T Consensus 212 d~nliit~Gk~H~~Fw~~~~~~l~k~--------------~~~fek-~e-kk~Vl~v~F~engdv-iTgDS~G~i~Iw~~ 274 (626)
T KOG2106|consen 212 DPNLIITCGKGHLYFWTLRGGSLVKR--------------QGIFEK-RE-KKFVLCVTFLENGDV-ITGDSGGNILIWSK 274 (626)
T ss_pred CCcEEEEeCCceEEEEEccCCceEEE--------------eecccc-cc-ceEEEEEEEcCCCCE-EeecCCceEEEEeC
Confidence 44444 45678999999875432211 111211 11 347999999987765 69999999999998
Q ss_pred CCCccCCCCCcceeEEecccCCcEEEEEEecCCCEEEeeCCCcEEEEeCCCccce--eecCCCceeeeEEEEeeceeecc
Q 003171 221 NARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGDLWSGSEGGGIKIWPWEAIEKA--LSLKPEERHTAALIVERSYIDLR 298 (842)
Q Consensus 221 ~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~L~SgS~DgtIrvWd~~t~~~~--l~~~~~~~~~~~l~~~~s~~~l~ 298 (842)
.+. +-..+-.+|.+.|.+++.-.+|.|+||+.|..|-+||- ...+. ..+..+
T Consensus 275 ~~~--------~~~k~~~aH~ggv~~L~~lr~GtllSGgKDRki~~Wd~-~y~k~r~~elPe~----------------- 328 (626)
T KOG2106|consen 275 GTN--------RISKQVHAHDGGVFSLCMLRDGTLLSGGKDRKIILWDD-NYRKLRETELPEQ----------------- 328 (626)
T ss_pred CCc--------eEEeEeeecCCceEEEEEecCccEeecCccceEEeccc-cccccccccCchh-----------------
Confidence 663 33444459999999999999999999999999999993 21111 111110
Q ss_pred cceeccceeeeecCCEEEEEEcCCCCEEEEeC-CCcEEEEEccCCcEEEEeecCCceEeeeecccCCCcccccceEEEEE
Q 003171 299 SHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIV 377 (842)
Q Consensus 299 ~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s-~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~ 377 (842)
.+.++.++-...+ +..++ .++|.-=.++++--+.++ +|+.....++
T Consensus 329 ------------~G~iRtv~e~~~d--i~vGTtrN~iL~Gt~~~~f~~~v~-gh~delwgla------------------ 375 (626)
T KOG2106|consen 329 ------------FGPIRTVAEGKGD--ILVGTTRNFILQGTLENGFTLTVQ-GHGDELWGLA------------------ 375 (626)
T ss_pred ------------cCCeeEEecCCCc--EEEeeccceEEEeeecCCceEEEE-ecccceeeEE------------------
Confidence 2234555544333 33333 233433334443332222 2222111111
Q ss_pred ecCCCCccceeeeEeecCcceEEecCCcEEEEeecCc--ccc-CCCceEEEEECCCCcEEEEeCCCeEEEEcCCCCeeee
Q 003171 378 TSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGG--FGD-DNRRTEALTTSIDGMIWTGGANGLLLQWDPNGNRLQD 454 (842)
Q Consensus 378 s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~--~~~-~~~~v~al~~s~dg~l~Sgs~DgtIrlWD~~g~~l~~ 454 (842)
..+...+.++...+...++|.+.. +.. -...+.++.|.|-|.++.|+..|...+.|.+.+.+-+
T Consensus 376 -------------~hps~~q~~T~gqdk~v~lW~~~k~~wt~~~~d~~~~~~fhpsg~va~Gt~~G~w~V~d~e~~~lv~ 442 (626)
T KOG2106|consen 376 -------------THPSKNQLLTCGQDKHVRLWNDHKLEWTKIIEDPAECADFHPSGVVAVGTATGRWFVLDTETQDLVT 442 (626)
T ss_pred -------------cCCChhheeeccCcceEEEccCCceeEEEEecCceeEeeccCcceEEEeeccceEEEEecccceeEE
Confidence 111122333444444444443211 111 1245678889999999999999988888985554444
Q ss_pred eecCCccEEEE--EecCCEEEEEecCcEEEEEeCC--Ccc-cccccccccCEEEEEe--CCCEEEEEcCCCCeeecc
Q 003171 455 FQYLPFAVQCL--CTFGSQIWVGYMNGIVQVLDLE--GNL-LGGWVAHSSPVIKMAV--GAGYIFTLANHGGIRGWN 524 (842)
Q Consensus 455 l~~H~~~V~sl--s~dG~~LasGs~DgtIrlWD~~--g~~-i~~l~gH~~~V~sla~--dg~~l~S~S~DgtIrvWd 524 (842)
+...+.++.++ +++|.+||.|+.|+.|.||-+. |+. .+.-+-|-.+|+.+.+ |++++.+-|.|--|-.|.
T Consensus 443 ~~~d~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~~gs~ithLDwS~Ds~~~~~~S~d~eiLyW~ 519 (626)
T KOG2106|consen 443 IHTDNEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGRKYSRVGKCSGSPITHLDWSSDSQFLVSNSGDYEILYWK 519 (626)
T ss_pred EEecCCceEEEEEcCCCCEEEEecCCCeEEEEEECCCCcEEEEeeeecCceeEEeeecCCCceEEeccCceEEEEEc
Confidence 44446777776 5689999999999999999875 543 3333344478998874 899999999999999994
|
|
| >KOG0270 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.54 E-value=2.6e-13 Score=146.04 Aligned_cols=256 Identities=16% Similarity=0.243 Sum_probs=157.0
Q ss_pred CCCCCCceeecCCCCCccccCceeEEEEecCCEEEEec-CCCEEEEeCCCCccccccccccccCC----CCCCCCCCeee
Q 003171 112 HPARPPSLEVKPHPLRETQIGCFLRTIVCTEEQLWAGG-ENGLRVWNLKELYDESESDSVSVSKS----KGEDGTAPFKE 186 (842)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~-D~~vrvWdl~~~~~~~~~~~~~~~~~----~~~~~~~~~~~ 186 (842)
.|+-|-|+|-.-+|+.+...|.++ .+|+ |..|-|||++-...... -+.+|.. +.......+..
T Consensus 172 lpafPLC~ewld~~~~~~~~gNyv----------AiGtmdp~IeIWDLDI~d~v~P--~~~LGs~~sk~~~k~~k~~~~~ 239 (463)
T KOG0270|consen 172 LPAFPLCIEWLDHGSKSGGAGNYV----------AIGTMDPEIEIWDLDIVDAVLP--CVTLGSKASKKKKKKGKRSNSA 239 (463)
T ss_pred ccCcchhhhhhhcCCCCCCCcceE----------EEeccCceeEEecccccccccc--ceeechhhhhhhhhhccccccc
Confidence 566666777666666665554444 3354 78999999953222111 0123311 11111111222
Q ss_pred eeecCCCeEEEEEcCC-CCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCC-C-EEEeeCCCc
Q 003171 187 SVKGVSSVMCMVGDEA-SGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYG-D-LWSGSEGGG 263 (842)
Q Consensus 187 ~~~g~~~V~~la~dpd-g~~LaSGs~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG-~-L~SgS~Dgt 263 (842)
+.| +.+|.+|++.-. ...|||||.|.||++||+++| ++..++..|.+.|.++.|.|.- . |+|||.|++
T Consensus 240 ~gH-Tdavl~Ls~n~~~~nVLaSgsaD~TV~lWD~~~g--------~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~ 310 (463)
T KOG0270|consen 240 SGH-TDAVLALSWNRNFRNVLASGSADKTVKLWDVDTG--------KPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGT 310 (463)
T ss_pred ccc-hHHHHHHHhccccceeEEecCCCceEEEEEcCCC--------CcceehhhcCCceeEEEecCCCceEEEeccccce
Confidence 334 778888887653 378999999999999999998 6777888899999999999975 3 889999999
Q ss_pred EEEEeCCCcc---ceeecCCCceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcCC-CCEEEEeC-CCcEEEEE
Q 003171 264 IKIWPWEAIE---KALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHS-RAKVWSAG-FLSFALWD 338 (842)
Q Consensus 264 IrvWd~~t~~---~~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~-~~~v~s~s-~~tI~lWD 338 (842)
|++.|..... ..+++ .++|..++-.+. ...+.+++ +++++-.|
T Consensus 311 V~l~D~R~~~~s~~~wk~--------------------------------~g~VEkv~w~~~se~~f~~~tddG~v~~~D 358 (463)
T KOG0270|consen 311 VALKDCRDPSNSGKEWKF--------------------------------DGEVEKVAWDPHSENSFFVSTDDGTVYYFD 358 (463)
T ss_pred EEeeeccCccccCceEEe--------------------------------ccceEEEEecCCCceeEEEecCCceEEeee
Confidence 9999986311 11111 223333333322 12223333 46788888
Q ss_pred ccC-CcEEEEeecCCceEeeeecccCCCcccccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEeecCcccc
Q 003171 339 ART-RELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGD 417 (842)
Q Consensus 339 ~~t-g~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~ 417 (842)
++. |+++-++..|.+
T Consensus 359 ~R~~~~~vwt~~AHd~---------------------------------------------------------------- 374 (463)
T KOG0270|consen 359 IRNPGKPVWTLKAHDD---------------------------------------------------------------- 374 (463)
T ss_pred cCCCCCceeEEEeccC----------------------------------------------------------------
Confidence 875 344444433322
Q ss_pred CCCceEEEEEC--CCCcEEEEeCCCeEEEEcCCCCeeeeeecCC---ccEEEEEecC---CEEEEEecCcEEEEEeCC
Q 003171 418 DNRRTEALTTS--IDGMIWTGGANGLLLQWDPNGNRLQDFQYLP---FAVQCLCTFG---SQIWVGYMNGIVQVLDLE 487 (842)
Q Consensus 418 ~~~~v~al~~s--~dg~l~Sgs~DgtIrlWD~~g~~l~~l~~H~---~~V~sls~dG---~~LasGs~DgtIrlWD~~ 487 (842)
.|..|.++ .-|.+.+++.|++|++|+..+..-+....|. +...|++++. -.++.|+..+.++|||+.
T Consensus 375 ---~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~~v~~~~~~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~ 449 (463)
T KOG0270|consen 375 ---EISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPKSVKEHSFKLGRLHCFALDPDVAFTLAFGGEKAVLRVWDIF 449 (463)
T ss_pred ---CcceEEecCCCCcceeeccccceEEEEeecCCCCcccccccccccceeecccCCCcceEEEecCccceEEEeecc
Confidence 22222222 2356889999999999998543322222332 2344555543 388889988899999975
|
|
| >KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.54 E-value=3e-13 Score=135.65 Aligned_cols=237 Identities=14% Similarity=0.208 Sum_probs=150.2
Q ss_pred CCEEEE-ecCCCEEEEeCCCCccccccccccccCCCCCCCCCCeeeeeec-CCCeEEEEEcC--CCCEEEEEeCCCcEEE
Q 003171 142 EEQLWA-GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKG-VSSVMCMVGDE--ASGVVWSGHRDGRIMC 217 (842)
Q Consensus 142 ~~~l~~-~~D~~vrvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~~~V~~la~dp--dg~~LaSGs~DGtIrl 217 (842)
+.+|.. ++|++|||+........ .+. ..+.| .+||.-+++-. -|.+|||+|+||+|.|
T Consensus 23 gkrlATcsSD~tVkIf~v~~n~~s-----------------~ll-~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIi 84 (299)
T KOG1332|consen 23 GKRLATCSSDGTVKIFEVRNNGQS-----------------KLL-AELTGHSGPVWKVAWAHPKFGTILASCSYDGKVII 84 (299)
T ss_pred cceeeeecCCccEEEEEEcCCCCc-----------------eee-eEecCCCCCeeEEeecccccCcEeeEeecCceEEE
Confidence 555654 78999999998542211 111 11223 89999999976 7899999999999999
Q ss_pred EECCCCccCCCCCcceeEEecccCCcEEEEEEecCCC---EEEeeCCCcEEEEeCCCc-ccee-e-cCCCceeeeEEEEe
Q 003171 218 WKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD---LWSGSEGGGIKIWPWEAI-EKAL-S-LKPEERHTAALIVE 291 (842)
Q Consensus 218 Wdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~---L~SgS~DgtIrvWd~~t~-~~~l-~-~~~~~~~~~~l~~~ 291 (842)
|+-++| ++.+...+.+|...|++|+|-|.+. |+.||.||.|.|-+.++. .-.. + ...+.
T Consensus 85 Wke~~g------~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~--------- 149 (299)
T KOG1332|consen 85 WKEENG------RWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHE--------- 149 (299)
T ss_pred EecCCC------chhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccc---------
Confidence 998775 4566777889999999999998754 689999999999988652 1000 0 00000
Q ss_pred eceeecccceeccceeeeecC-CEEEEEEcC--CCCEEEEeC-CCcEEEEEccCCcEE--EEeecCCceEeeeecccCCC
Q 003171 292 RSYIDLRSHLSVNGFSSILTS-DIKNLLSDH--SRAKVWSAG-FLSFALWDARTRELL--KVFNIDGQIENRVDMSLLPD 365 (842)
Q Consensus 292 ~s~~~l~~~~~~~~~~~~~s~-~v~~las~~--~~~~v~s~s-~~tI~lWD~~tg~~l--~~l~~~~~~~~~~~~s~~~~ 365 (842)
.-++.++-.|.. ....+-..+ .-.++++++ |..|+||+...++-+ ++
T Consensus 150 ---------~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~------------------ 202 (299)
T KOG1332|consen 150 ---------IGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERT------------------ 202 (299)
T ss_pred ---------cccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcchhhhhh------------------
Confidence 011111111110 011111111 113577776 788999987664210 11
Q ss_pred cccccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEeecCccccCCCceEEEEECCC-----CcEEEEeCCC
Q 003171 366 FAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSID-----GMIWTGGANG 440 (842)
Q Consensus 366 ~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~al~~s~d-----g~l~Sgs~Dg 440 (842)
|.+|...|+.++..|. .+|+|+|.||
T Consensus 203 -------------------------------------------------l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg 233 (299)
T KOG1332|consen 203 -------------------------------------------------LEGHKDWVRDVAWAPSVGLPKSTIASCSQDG 233 (299)
T ss_pred -------------------------------------------------hhhcchhhhhhhhccccCCCceeeEEecCCC
Confidence 2233333444444432 3589999999
Q ss_pred eEEEEcCC--C-----CeeeeeecCCccEEEE--EecCCEEEEEecCcEEEEEe--CCCcc
Q 003171 441 LLLQWDPN--G-----NRLQDFQYLPFAVQCL--CTFGSQIWVGYMNGIVQVLD--LEGNL 490 (842)
Q Consensus 441 tIrlWD~~--g-----~~l~~l~~H~~~V~sl--s~dG~~LasGs~DgtIrlWD--~~g~~ 490 (842)
+|.||... + +++++| ...+..+ ++.|..|++++.|..|.||- ++|+-
T Consensus 234 ~viIwt~~~e~e~wk~tll~~f---~~~~w~vSWS~sGn~LaVs~GdNkvtlwke~~~Gkw 291 (299)
T KOG1332|consen 234 TVIIWTKDEEYEPWKKTLLEEF---PDVVWRVSWSLSGNILAVSGGDNKVTLWKENVDGKW 291 (299)
T ss_pred cEEEEEecCccCcccccccccC---CcceEEEEEeccccEEEEecCCcEEEEEEeCCCCcE
Confidence 99999773 2 233332 3567766 45799999999999999996 45664
|
|
| >KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.54 E-value=7.2e-13 Score=143.25 Aligned_cols=236 Identities=17% Similarity=0.216 Sum_probs=156.6
Q ss_pred ecCCCEEEEeCCCCccccccccccccCCCCCCCCCC-eeeeeecCCCeEEEEEcCC-CCEEEEEeCCCcEEEEECCCCcc
Q 003171 148 GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAP-FKESVKGVSSVMCMVGDEA-SGVVWSGHRDGRIMCWKMNARLL 225 (842)
Q Consensus 148 ~~D~~vrvWdl~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~g~~~V~~la~dpd-g~~LaSGs~DGtIrlWdl~~g~~ 225 (842)
+..+.|.|||..+...... ..| +..| ++-.+| ...=+.|.+++. ...|+||+.|++|.+||+.....
T Consensus 144 t~~~dv~Vfd~tk~~s~~~--------~~~--~~~Pdl~L~gH-~~eg~glsWn~~~~g~Lls~~~d~~i~lwdi~~~~~ 212 (422)
T KOG0264|consen 144 TSSGDVYVFDYTKHPSKPK--------ASG--ECRPDLRLKGH-EKEGYGLSWNRQQEGTLLSGSDDHTICLWDINAESK 212 (422)
T ss_pred CCCCCEEEEEeccCCCccc--------ccc--cCCCceEEEee-cccccccccccccceeEeeccCCCcEEEEecccccc
Confidence 4467999999865322110 111 1112 122223 333455777764 47899999999999999987521
Q ss_pred CCCCCcceeEEecccCCcEEEEEEecCCC--EEEeeCCCcEEEEeCCCccceeecCCCceeeeEEEEeeceeecccceec
Q 003171 226 DSDDGFGEVLSWQAHRGPVLSLCISSYGD--LWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSV 303 (842)
Q Consensus 226 ~~~~~~~~~~~l~gH~~~V~slafs~dG~--L~SgS~DgtIrvWd~~t~~~~l~~~~~~~~~~~l~~~~s~~~l~~~~~~ 303 (842)
+ .........+.+|+..|..++|++-.. +.|+++|+.+.|||+.+.+... .+. ..+|
T Consensus 213 ~-~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~------~~~-----------~~ah--- 271 (422)
T KOG0264|consen 213 E-DKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKP------SHS-----------VKAH--- 271 (422)
T ss_pred C-CccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCC------ccc-----------cccc---
Confidence 0 112334556789999999999999654 5799999999999997521100 000 0112
Q ss_pred cceeeeecCCEEEEEEcCCC-CEEEEeC-CCcEEEEEccCC-cEEEEeecCCceEeeeecccCCCcccccceEEEEEecC
Q 003171 304 NGFSSILTSDIKNLLSDHSR-AKVWSAG-FLSFALWDARTR-ELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSS 380 (842)
Q Consensus 304 ~~~~~~~s~~v~~las~~~~-~~v~s~s-~~tI~lWD~~tg-~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~ 380 (842)
+.++.|+++.+-+ ..|++++ |++|+|||+++= +++.+
T Consensus 272 -------~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~--------------------------------- 311 (422)
T KOG0264|consen 272 -------SAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHT--------------------------------- 311 (422)
T ss_pred -------CCceeEEEeCCCCCceEEeccCCCcEEEeechhcccCcee---------------------------------
Confidence 5678899998754 4677777 789999999752 11222
Q ss_pred CCCccceeeeEeecCcceEEecCCcEEEEeecCccccCCCceEEEEECCCCc--EEEEeCCCeEEEEcCC--CCe-----
Q 003171 381 KKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGM--IWTGGANGLLLQWDPN--GNR----- 451 (842)
Q Consensus 381 ~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~al~~s~dg~--l~Sgs~DgtIrlWD~~--g~~----- 451 (842)
+.+|...|..|.+||+.. |+|++.|+.+.+||+. |+.
T Consensus 312 ----------------------------------~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~ed 357 (422)
T KOG0264|consen 312 ----------------------------------FEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPED 357 (422)
T ss_pred ----------------------------------ccCCCcceEEEEeCCCCCceeEecccCCcEEEEeccccccccChhh
Confidence 223444455666777643 7899999999999993 432
Q ss_pred --------eeeeecCCccEEEEEec---CCEEEEEecCcEEEEEeCCCc
Q 003171 452 --------LQDFQYLPFAVQCLCTF---GSQIWVGYMNGIVQVLDLEGN 489 (842)
Q Consensus 452 --------l~~l~~H~~~V~sls~d---G~~LasGs~DgtIrlWD~~g~ 489 (842)
+-+--||...|..++.+ .-.|+|.+.|+.++||.....
T Consensus 358 a~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s~~ 406 (422)
T KOG0264|consen 358 AEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMAEN 406 (422)
T ss_pred hccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeecccc
Confidence 23334799999988654 348999999999999997643
|
|
| >KOG1274 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.7e-12 Score=150.26 Aligned_cols=251 Identities=17% Similarity=0.241 Sum_probs=173.3
Q ss_pred CCCcccccccCCCcccccccccccC---CCCCCCceeecCCCCCccccCceeEEEEecCCEEEEe-cCCCEEEEeCCCCc
Q 003171 87 SSSLPEYIGKGGDIPMFKPPVRAAL---HPARPPSLEVKPHPLRETQIGCFLRTIVCTEEQLWAG-GENGLRVWNLKELY 162 (842)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~-~D~~vrvWdl~~~~ 162 (842)
..+-.|||-.+|.+|. ||.+- ..+.|+.++. .|.++..|++....|.++ .+++|.+|.+.++.
T Consensus 21 ~d~~gefi~tcgsdg~----ir~~~~~sd~e~P~ti~~---------~g~~v~~ia~~s~~f~~~s~~~tv~~y~fps~~ 87 (933)
T KOG1274|consen 21 YDPDGEFICTCGSDGD----IRKWKTNSDEEEPETIDI---------SGELVSSIACYSNHFLTGSEQNTVLRYKFPSGE 87 (933)
T ss_pred EcCCCCEEEEecCCCc----eEEeecCCcccCCchhhc---------cCceeEEEeecccceEEeeccceEEEeeCCCCC
Confidence 3566789988888776 45432 3356666554 457899999998877775 58899999997765
Q ss_pred cccccccccccCCCCCCCCCCeeeeeecCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEecccCC
Q 003171 163 DESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRG 242 (842)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~V~~la~dpdg~~LaSGs~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~ 242 (842)
..+. .++| +-|+.+++++.+|+++|.||.|-.||+-++.+. ....+++||.+
T Consensus 88 ~~~i--------------L~Rf------tlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~--------s~~~~lrgh~a 139 (933)
T KOG1274|consen 88 EDTI--------------LARF------TLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDS--------SQEKVLRGHDA 139 (933)
T ss_pred ccce--------------eeee------eccceEEEEecCCcEEEeecCceeEEEEecccc--------chheeecccCC
Confidence 4321 2233 458999999999999999999999999999886 56788999999
Q ss_pred cEEEEEEecCCC-EEEeeCCCcEEEEeCCCccceeecCCCceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcC
Q 003171 243 PVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDH 321 (842)
Q Consensus 243 ~V~slafs~dG~-L~SgS~DgtIrvWd~~t~~~~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~ 321 (842)
+|.+|.|+|.|. |++.+-||.|++|+++++....++..-.. .+.+. .+.-...++-.+
T Consensus 140 pVl~l~~~p~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k-------------------~n~~~--~s~i~~~~aW~P 198 (933)
T KOG1274|consen 140 PVLQLSYDPKGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDK-------------------DNEFI--LSRICTRLAWHP 198 (933)
T ss_pred ceeeeeEcCCCCEEEEEecCceEEEEEcccchhhhhcccCCc-------------------ccccc--ccceeeeeeecC
Confidence 999999999999 67999999999999987654433322110 00000 011223455566
Q ss_pred CCCEE-EEeCCCcEEEEEccCCcEEEEeecCCceEeeeecccCCCcccccceEEEEEecCCCCccceeeeEeecCcceEE
Q 003171 322 SRAKV-WSAGFLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIM 400 (842)
Q Consensus 322 ~~~~v-~s~s~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~ 400 (842)
.++.+ +.+.+++|++++..+.+....|..+
T Consensus 199 k~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~------------------------------------------------- 229 (933)
T KOG1274|consen 199 KGGTLAVPPVDNTVKVYSRKGWELQFKLRDK------------------------------------------------- 229 (933)
T ss_pred CCCeEEeeccCCeEEEEccCCceeheeeccc-------------------------------------------------
Confidence 64544 4445778888887776654443211
Q ss_pred ecCCcEEEEeecCccccCCCceEEEEECCCCc-EEEEeCCCeEEEEcCCCCeeeeeecCCccEEEEEe
Q 003171 401 GAADAVRRVAAKGGFGDDNRRTEALTTSIDGM-IWTGGANGLLLQWDPNGNRLQDFQYLPFAVQCLCT 467 (842)
Q Consensus 401 g~~~~v~~v~~~g~~~~~~~~v~al~~s~dg~-l~Sgs~DgtIrlWD~~g~~l~~l~~H~~~V~sls~ 467 (842)
.+...+..+.+||.|+ |++++.||.|-+||.+.-..+.+ ...|+|+++
T Consensus 230 ----------------~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t~~~~~~---~~~Vc~~aw 278 (933)
T KOG1274|consen 230 ----------------LSSSKFSDLQWSPNGKYIAASTLDGQILVWNVDTHERHEF---KRAVCCEAW 278 (933)
T ss_pred ----------------ccccceEEEEEcCCCcEEeeeccCCcEEEEecccchhccc---cceeEEEec
Confidence 0112245678999998 89999999999999953211222 245666653
|
|
| >KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown] | Back alignment and domain information |
|---|
Probab=99.48 E-value=6.5e-13 Score=148.13 Aligned_cols=260 Identities=15% Similarity=0.186 Sum_probs=157.0
Q ss_pred CCCEEEEEeCCCcEEEEECCCCccCCCCCcce--eEEecccCCcEEEEEEecCCC--EEEeeCCCcEEEEeCCCccceee
Q 003171 202 ASGVVWSGHRDGRIMCWKMNARLLDSDDGFGE--VLSWQAHRGPVLSLCISSYGD--LWSGSEGGGIKIWPWEAIEKALS 277 (842)
Q Consensus 202 dg~~LaSGs~DGtIrlWdl~~g~~~~~~~~~~--~~~l~gH~~~V~slafs~dG~--L~SgS~DgtIrvWd~~t~~~~l~ 277 (842)
...+||.+..||.|.++|...-. .+.++ ...|.+|.++|..+.+-| |+ |++++.|.|||+||+.+.+..-.
T Consensus 63 ~eHiLavadE~G~i~l~dt~~~~----fr~ee~~lk~~~aH~nAifDl~wap-ge~~lVsasGDsT~r~Wdvk~s~l~G~ 137 (720)
T KOG0321|consen 63 KEHILAVADEDGGIILFDTKSIV----FRLEERQLKKPLAHKNAIFDLKWAP-GESLLVSASGDSTIRPWDVKTSRLVGG 137 (720)
T ss_pred ccceEEEecCCCceeeecchhhh----cchhhhhhcccccccceeEeeccCC-CceeEEEccCCceeeeeeeccceeecc
Confidence 34689999999999999976531 11111 355789999999999999 75 78999999999999966321100
Q ss_pred cCCCceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcCCCCEEEEeC--CCcEEEEEccCCcEEEEeecCCceE
Q 003171 278 LKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG--FLSFALWDARTRELLKVFNIDGQIE 355 (842)
Q Consensus 278 ~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s--~~tI~lWD~~tg~~l~~l~~~~~~~ 355 (842)
. . ..|| ...++.+++.+.+..|++.+ |+.|.|||++-... ..+.-. .
T Consensus 138 ------~-~----------~~GH----------~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~-d~~e~~---~ 186 (720)
T KOG0321|consen 138 ------R-L----------NLGH----------TGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGV-DALEEF---D 186 (720)
T ss_pred ------e-e----------eccc----------ccccchhhhccCCCcceeeccCCCcEEEEEEeccch-hhHHHH---h
Confidence 0 0 0112 44567777777666555544 67899999864321 111000 0
Q ss_pred eeeecccCCCcccccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEeecCccccCCCceEEEEECCCCcEEE
Q 003171 356 NRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGMIWT 435 (842)
Q Consensus 356 ~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~al~~s~dg~l~S 435 (842)
+........ . .... +.. +. ....+..+. +++ ...|+.+.|-.+..|+|
T Consensus 187 ~~~~~~~n~--~-ptps-----kp~---~k---------r~~k~kA~s---------~ti---~ssvTvv~fkDe~tlaS 234 (720)
T KOG0321|consen 187 NRIYGRHNT--A-PTPS-----KPL---KK---------RIRKWKAAS---------NTI---FSSVTVVLFKDESTLAS 234 (720)
T ss_pred hhhhccccC--C-CCCC-----chh---hc---------ccccccccc---------Cce---eeeeEEEEEeccceeee
Confidence 000000000 0 0000 000 00 000000000 011 12356677777778999
Q ss_pred EeC-CCeEEEEcC-CCC------eeee--eecC---CccEEEEEec--CCEEEEEecCcEEEEEeCCC---ccccccccc
Q 003171 436 GGA-NGLLLQWDP-NGN------RLQD--FQYL---PFAVQCLCTF--GSQIWVGYMNGIVQVLDLEG---NLLGGWVAH 497 (842)
Q Consensus 436 gs~-DgtIrlWD~-~g~------~l~~--l~~H---~~~V~sls~d--G~~LasGs~DgtIrlWD~~g---~~i~~l~gH 497 (842)
++. |++||+||+ +.. .++. +..| ...+.+|..| |.+|.+.+.|++|.+||+.+ ..+..+.+|
T Consensus 235 aga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~ 314 (720)
T KOG0321|consen 235 AGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDNSIYFYNMRSLSISPVAEFSGK 314 (720)
T ss_pred ccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEecCCcEEEEeccccCcCchhhccCc
Confidence 887 999999999 432 2222 2223 2346677665 78888888899999999863 356666666
Q ss_pred ccC---EEE-EEeCCCEEEEEcCCCCeeeccccCCC
Q 003171 498 SSP---VIK-MAVGAGYIFTLANHGGIRGWNVTSPG 529 (842)
Q Consensus 498 ~~~---V~s-la~dg~~l~S~S~DgtIrvWd~~~~~ 529 (842)
... |.+ +.+|+.+++||+.|..+.+|.+.++.
T Consensus 315 ~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e 350 (720)
T KOG0321|consen 315 LNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPE 350 (720)
T ss_pred ccceeeeeeecCCCCceEeccCCCcceeeeeecCcc
Confidence 432 333 44899999999999999999987653
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.48 E-value=1.3e-12 Score=145.38 Aligned_cols=261 Identities=14% Similarity=0.202 Sum_probs=189.0
Q ss_pred CeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCCC-EEEeeCCCcEEEEeCCC
Q 003171 193 SVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEA 271 (842)
Q Consensus 193 ~V~~la~dpdg~~LaSGs~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~~t 271 (842)
.|..++|-|||..|+.+.. ..+-++|.+.| ....+++||.+.|++|+++.||+ ++||+.|+.|-+|+-.-
T Consensus 14 ci~d~afkPDGsqL~lAAg-~rlliyD~ndG--------~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~kl 84 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAAG-SRLLVYDTSDG--------TLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKL 84 (1081)
T ss_pred chheeEECCCCceEEEecC-CEEEEEeCCCc--------ccccccccccceEEEEEEccCCceeccCCCceeEEEecccc
Confidence 6888999999988777654 46779999988 67889999999999999999998 68999999999998632
Q ss_pred ccceeecCCCceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcCCCCEEEEeCCCcEEEEEccCCcEEEEeecC
Q 003171 272 IEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGFLSFALWDARTRELLKVFNID 351 (842)
Q Consensus 272 ~~~~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s~~tI~lWD~~tg~~l~~l~~~ 351 (842)
+..+++ ++...+.|+.+.|....+++++-.-+-+|......+.+.-. .
T Consensus 85 -EG~LkY------------------------------SH~D~IQCMsFNP~~h~LasCsLsdFglWS~~qK~V~K~ks-s 132 (1081)
T KOG1538|consen 85 -EGILKY------------------------------SHNDAIQCMSFNPITHQLASCSLSDFGLWSPEQKSVSKHKS-S 132 (1081)
T ss_pred -cceeee------------------------------ccCCeeeEeecCchHHHhhhcchhhccccChhhhhHHhhhh-h
Confidence 111211 11445778888888888888876667788776544322100 0
Q ss_pred CceEeeeecccCCCcccccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEee-----cCccc---cCCCceE
Q 003171 352 GQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAA-----KGGFG---DDNRRTE 423 (842)
Q Consensus 352 ~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~-----~g~~~---~~~~~v~ 423 (842)
. + ..+.....++...++|+.+|...+.. ++... +.+..|.
T Consensus 133 ~--------------------R------------~~~CsWtnDGqylalG~~nGTIsiRNk~gEek~~I~Rpgg~Nspiw 180 (1081)
T KOG1538|consen 133 S--------------------R------------IICCSWTNDGQYLALGMFNGTISIRNKNGEEKVKIERPGGSNSPIW 180 (1081)
T ss_pred e--------------------e------------EEEeeecCCCcEEEEeccCceEEeecCCCCcceEEeCCCCCCCCce
Confidence 0 0 00011122344567788887766653 22222 3667889
Q ss_pred EEEECCCC------cEEEEeCCCeEEEEcCCCCeeeeeecCCccEEEE--EecCCEEEEEecCcEEEEEeCCCccccccc
Q 003171 424 ALTTSIDG------MIWTGGANGLLLQWDPNGNRLQDFQYLPFAVQCL--CTFGSQIWVGYMNGIVQVLDLEGNLLGGWV 495 (842)
Q Consensus 424 al~~s~dg------~l~Sgs~DgtIrlWD~~g~~l~~l~~H~~~V~sl--s~dG~~LasGs~DgtIrlWD~~g~~i~~l~ 495 (842)
+++++|.. .++......|+-++.+.|+.+..-+.-.-.-.|+ .++|.++..|+.|+.+.++-.+|-.+.++.
T Consensus 181 si~~~p~sg~G~~di~aV~DW~qTLSFy~LsG~~Igk~r~L~FdP~CisYf~NGEy~LiGGsdk~L~~fTR~GvrLGTvg 260 (1081)
T KOG1538|consen 181 SICWNPSSGEGRNDILAVADWGQTLSFYQLSGKQIGKDRALNFDPCCISYFTNGEYILLGGSDKQLSLFTRDGVRLGTVG 260 (1081)
T ss_pred EEEecCCCCCCccceEEEEeccceeEEEEecceeecccccCCCCchhheeccCCcEEEEccCCCceEEEeecCeEEeecc
Confidence 99998752 3677777888988888887664222112223455 458999999999999999999998888888
Q ss_pred ccccCEEEEE--eCCCEEEEEcCCCCeeecccc
Q 003171 496 AHSSPVIKMA--VGAGYIFTLANHGGIRGWNVT 526 (842)
Q Consensus 496 gH~~~V~sla--~dg~~l~S~S~DgtIrvWd~~ 526 (842)
....+||+|+ +++++++-|..||||-.+++.
T Consensus 261 ~~D~WIWtV~~~PNsQ~v~~GCqDGTiACyNl~ 293 (1081)
T KOG1538|consen 261 EQDSWIWTVQAKPNSQYVVVGCQDGTIACYNLI 293 (1081)
T ss_pred ccceeEEEEEEccCCceEEEEEccCeeehhhhH
Confidence 8889999987 688999999999999999964
|
|
| >KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown] | Back alignment and domain information |
|---|
Probab=99.46 E-value=9.4e-12 Score=127.55 Aligned_cols=246 Identities=16% Similarity=0.183 Sum_probs=163.6
Q ss_pred CCCeEEEEEcCC-CCEEEEEeCCC-------cEEEEECCCCcc-CCCCCcceeEEec-ccCCcEEEEEEecCCCEEEeeC
Q 003171 191 VSSVMCMVGDEA-SGVVWSGHRDG-------RIMCWKMNARLL-DSDDGFGEVLSWQ-AHRGPVLSLCISSYGDLWSGSE 260 (842)
Q Consensus 191 ~~~V~~la~dpd-g~~LaSGs~DG-------tIrlWdl~~g~~-~~~~~~~~~~~l~-gH~~~V~slafs~dG~L~SgS~ 260 (842)
.+.|..++.+|. .++|+|...|. .+-||.+..... .....++++..|. .|-+.|.||.|.|++.-..+-.
T Consensus 63 agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew~Pns~klasm~ 142 (370)
T KOG1007|consen 63 AGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEWEPNSDKLASMD 142 (370)
T ss_pred CcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcCCHHHhCceeeEEEcCCCCeeEEec
Confidence 678999999984 46777766542 577999876421 0111233444443 5567999999999987333334
Q ss_pred CCcEEEEeCCCcccee-ecC-CCceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcCCCCEEEEeCCCcEEEEE
Q 003171 261 GGGIKIWPWEAIEKAL-SLK-PEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGFLSFALWD 338 (842)
Q Consensus 261 DgtIrvWd~~t~~~~l-~~~-~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s~~tI~lWD 338 (842)
|..|-+|+++...+.. .+. .....+. +....|..+ | .+++..|++.++.++..||
T Consensus 143 dn~i~l~~l~ess~~vaev~ss~s~e~~-------------~~ftsg~Ws-p---------HHdgnqv~tt~d~tl~~~D 199 (370)
T KOG1007|consen 143 DNNIVLWSLDESSKIVAEVLSSESAEMR-------------HSFTSGAWS-P---------HHDGNQVATTSDSTLQFWD 199 (370)
T ss_pred cCceEEEEcccCcchheeeccccccccc-------------ceecccccC-C---------CCccceEEEeCCCcEEEEE
Confidence 8999999997643311 000 0000000 000011000 0 2356677777888999999
Q ss_pred ccCCcEEEEeecCCceEeeeecccCCCcccccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEeecCccccC
Q 003171 339 ARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDD 418 (842)
Q Consensus 339 ~~tg~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~ 418 (842)
++|-++.-... ..|
T Consensus 200 ~RT~~~~~sI~------------------------------------------------------------------dAH 213 (370)
T KOG1007|consen 200 LRTMKKNNSIE------------------------------------------------------------------DAH 213 (370)
T ss_pred ccchhhhcchh------------------------------------------------------------------hhh
Confidence 98754321110 013
Q ss_pred CCceEEEEECCCCc--EEEEeCCCeEEEEcC--CCCeeeeeecCCccEEEEEec---CCEEEEEecCcEEEEEeCC--C-
Q 003171 419 NRRTEALTTSIDGM--IWTGGANGLLLQWDP--NGNRLQDFQYLPFAVQCLCTF---GSQIWVGYMNGIVQVLDLE--G- 488 (842)
Q Consensus 419 ~~~v~al~~s~dg~--l~Sgs~DgtIrlWD~--~g~~l~~l~~H~~~V~sls~d---G~~LasGs~DgtIrlWD~~--g- 488 (842)
.+.|..+-|.|+.+ |++|+.||.||+||. +...++++.+|+.+|.++.+. .+.|.+|++|..|.||... .
T Consensus 214 gq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~svSS 293 (370)
T KOG1007|consen 214 GQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCASSVSS 293 (370)
T ss_pred cceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEecCccceEEEecCCCceeEEEecccccc
Confidence 33455566777765 789999999999999 357899999999999999764 5689999999999999621 0
Q ss_pred ---------------------------cccccccccccCEEEEEe---CCCEEEEEcCCCCeeeccc
Q 003171 489 ---------------------------NLLGGWVAHSSPVIKMAV---GAGYIFTLANHGGIRGWNV 525 (842)
Q Consensus 489 ---------------------------~~i~~l~gH~~~V~sla~---dg~~l~S~S~DgtIrvWd~ 525 (842)
.++.++..|.+.|+++++ |+=.++|.|.||.+.|=.+
T Consensus 294 E~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadPWiFASLSYDGRviIs~V 360 (370)
T KOG1007|consen 294 EQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADPWIFASLSYDGRVIISSV 360 (370)
T ss_pred ccccccccccccCcchhhHHhcccccccccccccccccceEEEeeccCCCeeEEEeccCceEEeecC
Confidence 135578899999999996 6667889999999877543
|
|
| >KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription] | Back alignment and domain information |
|---|
Probab=99.46 E-value=1.5e-11 Score=138.54 Aligned_cols=316 Identities=16% Similarity=0.166 Sum_probs=183.4
Q ss_pred EEEE-ecCCCEEEEeCCCCccccccccccccCCCCCCCCCCeeeeeecCCCeEEEEEcCCCC---EEEEEeCCCcEEEEE
Q 003171 144 QLWA-GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASG---VVWSGHRDGRIMCWK 219 (842)
Q Consensus 144 ~l~~-~~D~~vrvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~V~~la~dpdg~---~LaSGs~DGtIrlWd 219 (842)
.+++ |....|-+||-.+.... ....+| ..+|.|+.+=|..+ .++||+.|+.|++|.
T Consensus 26 ~~vafGa~~~Iav~dp~k~~i~-------------------t~l~GH-~a~VnC~~~l~~s~~~a~~vsG~sD~~v~lW~ 85 (764)
T KOG1063|consen 26 GLVAFGAGPAIAVADPEKILIV-------------------TTLDGH-VARVNCVHWLPTSEIVAEMVSGDSDGRVILWK 85 (764)
T ss_pred ceEEecCCceEEEeCcccceeE-------------------EeccCC-ccceEEEEEcccccccceEEEccCCCcEEEEE
Confidence 3444 77789999997653111 112233 88999999988777 799999999999999
Q ss_pred CCCCccCCCCCcceeEEecccCCcEEEEEEecCCCEEEe-eCCCcEEEEeCCCcc--c--e----------eec--CC-C
Q 003171 220 MNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGDLWSG-SEGGGIKIWPWEAIE--K--A----------LSL--KP-E 281 (842)
Q Consensus 220 l~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~L~Sg-S~DgtIrvWd~~t~~--~--~----------l~~--~~-~ 281 (842)
+.. ..+.++.+++||...+.++ ...-...++ +.|+++.+|+.+..+ . . +++ .. .
T Consensus 86 l~~------~~~~~i~~~~g~~~~~~cv--~a~~~~~~~~~ad~~v~vw~~~~~e~~~~~~~rf~~k~~ipLcL~~~~~~ 157 (764)
T KOG1063|consen 86 LRD------EYLIKIYTIQGHCKECVCV--VARSSVMTCKAADGTVSVWDKQQDEVFLLAVLRFEIKEAIPLCLAALKNN 157 (764)
T ss_pred Eee------hheEEEEeecCcceeEEEE--EeeeeEEEeeccCceEEEeecCCCceeeehheehhhhhHhhHHHhhhccC
Confidence 984 2346677889987776655 433334443 789999999984322 0 0 111 11 0
Q ss_pred ceeeeEEEEeeceeecccceeccce---ee--eecCCEEEEEEcCC---CCEEEEeC-CCcEEEEEccCCcEEEEeecCC
Q 003171 282 ERHTAALIVERSYIDLRSHLSVNGF---SS--ILTSDIKNLLSDHS---RAKVWSAG-FLSFALWDARTRELLKVFNIDG 352 (842)
Q Consensus 282 ~~~~~~l~~~~s~~~l~~~~~~~~~---~~--~~s~~v~~las~~~---~~~v~s~s-~~tI~lWD~~tg~~l~~l~~~~ 352 (842)
...+.++-...-.+.+.+.. .... +. -+..-|+.+++... ...|+|++ |..||||.+.-+......
T Consensus 158 ~~~lla~Ggs~~~v~~~s~~-~d~f~~v~el~GH~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~---- 232 (764)
T KOG1063|consen 158 KTFLLACGGSKFVVDLYSSS-ADSFARVAELEGHTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSN---- 232 (764)
T ss_pred CcEEEEecCcceEEEEeccC-CcceeEEEEeeccchhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCcccc----
Confidence 00111000000011221111 0000 00 01333555555432 33666666 678999987432211100
Q ss_pred ceEeeeecccCCCcccccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEeecCccccCCCceEEEEECCCC-
Q 003171 353 QIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDG- 431 (842)
Q Consensus 353 ~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~al~~s~dg- 431 (842)
..+..... .. +... |. ...+ -.+++....-+.+|...|.++.+.|++
T Consensus 233 ~~e~~~t~----------------~~----~~~~----f~------~l~~--i~~~is~eall~GHeDWV~sv~W~p~~~ 280 (764)
T KOG1063|consen 233 EREDSLTT----------------LS----NLPV----FM------ILEE--IQYRISFEALLMGHEDWVYSVWWHPEGL 280 (764)
T ss_pred cccccccc----------------cc----CCce----ee------eeee--EEEEEehhhhhcCcccceEEEEEccchh
Confidence 00000000 00 0000 00 0000 012222233345788888899999999
Q ss_pred cEEEEeCCCeEEEEcCC---CC-----eeeeeecCCccEEE-E-EecCCEEEEEecCcEEEEEeCC--C--ccccccccc
Q 003171 432 MIWTGGANGLLLQWDPN---GN-----RLQDFQYLPFAVQC-L-CTFGSQIWVGYMNGIVQVLDLE--G--NLLGGWVAH 497 (842)
Q Consensus 432 ~l~Sgs~DgtIrlWD~~---g~-----~l~~l~~H~~~V~s-l-s~dG~~LasGs~DgtIrlWD~~--g--~~i~~l~gH 497 (842)
.|+|+|.|+++.+|... |- ++..+-|....-.. + ++++..|++-+..|..++|-.+ + .+.....||
T Consensus 281 ~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~hlWkt~d~~~w~~~~~iSGH 360 (764)
T KOG1063|consen 281 DLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGGFHLWKTKDKTFWTQEPVISGH 360 (764)
T ss_pred hheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEecccCcEEEEeccCccceeeccccccc
Confidence 59999999999999872 32 33444333333333 2 4577888888889999999843 2 345677899
Q ss_pred ccCEEEEEeC--CCEEEEEcCCCCeeecc
Q 003171 498 SSPVIKMAVG--AGYIFTLANHGGIRGWN 524 (842)
Q Consensus 498 ~~~V~sla~d--g~~l~S~S~DgtIrvWd 524 (842)
.+.|..|+++ |++++|+|.|.|-|++-
T Consensus 361 ~~~V~dv~W~psGeflLsvs~DQTTRlFa 389 (764)
T KOG1063|consen 361 VDGVKDVDWDPSGEFLLSVSLDQTTRLFA 389 (764)
T ss_pred cccceeeeecCCCCEEEEeccccceeeec
Confidence 9999999976 88999999999999975
|
|
| >KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.46 E-value=7.8e-12 Score=138.74 Aligned_cols=107 Identities=17% Similarity=0.215 Sum_probs=89.8
Q ss_pred ceEEEEECC--CCcEEEEeCCCeEEEEcC-C-C------CeeeeeecCCccEEEEEec---CCEEEEEecCcEEEEEeCC
Q 003171 421 RTEALTTSI--DGMIWTGGANGLLLQWDP-N-G------NRLQDFQYLPFAVQCLCTF---GSQIWVGYMNGIVQVLDLE 487 (842)
Q Consensus 421 ~v~al~~s~--dg~l~Sgs~DgtIrlWD~-~-g------~~l~~l~~H~~~V~sls~d---G~~LasGs~DgtIrlWD~~ 487 (842)
.|..+.+.| +.+|+.++.||.|+||.+ . | ..-..+++|...|++|.+. ...|++++.|-||+|||+.
T Consensus 629 ~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~ 708 (1012)
T KOG1445|consen 629 LVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLA 708 (1012)
T ss_pred eeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeehh
Confidence 355566665 235999999999999998 3 3 2345678999999999764 4689999999999999997
Q ss_pred -CcccccccccccCEEEEEe--CCCEEEEEcCCCCeeeccccC
Q 003171 488 -GNLLGGWVAHSSPVIKMAV--GAGYIFTLANHGGIRGWNVTS 527 (842)
Q Consensus 488 -g~~i~~l~gH~~~V~sla~--dg~~l~S~S~DgtIrvWd~~~ 527 (842)
++....|.||++.|.++++ ||+.++|.+.||+||+++-++
T Consensus 709 ~~~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs 751 (1012)
T KOG1445|consen 709 NAKLYSRLVGHTDQIFGIAWSPDGRRIATVCKDGTLRVYEPRS 751 (1012)
T ss_pred hhhhhheeccCcCceeEEEECCCCcceeeeecCceEEEeCCCC
Confidence 7788889999999999985 899999999999999998654
|
|
| >KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.46 E-value=1.9e-11 Score=126.49 Aligned_cols=115 Identities=12% Similarity=0.126 Sum_probs=79.5
Q ss_pred cCCEEEE-ecCCCEEEEeCCCCccccccccccccCCCCCCCCCCeeeeeecCCCeEEEEEcC--CCCEEEEEeCCCcEEE
Q 003171 141 TEEQLWA-GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDE--ASGVVWSGHRDGRIMC 217 (842)
Q Consensus 141 ~~~~l~~-~~D~~vrvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~V~~la~dp--dg~~LaSGs~DGtIrl 217 (842)
.++++.+ ++|.+|+|||+.+...... -++. -..| .++|..+.+-+ =|+.||++|+|++++|
T Consensus 24 ~GRRmAtCSsDq~vkI~d~~~~s~~W~-------------~Ts~--Wrah-~~Si~rV~WAhPEfGqvvA~cS~Drtv~i 87 (361)
T KOG2445|consen 24 YGRRMATCSSDQTVKIWDSTSDSGTWS-------------CTSS--WRAH-DGSIWRVVWAHPEFGQVVATCSYDRTVSI 87 (361)
T ss_pred cCceeeeccCCCcEEEEeccCCCCceE-------------Eeee--EEec-CCcEEEEEecCccccceEEEEecCCceee
Confidence 4778887 6799999999744221110 0011 1133 78899998864 4799999999999999
Q ss_pred EECCCCccC-CCCCcceeEEecccCCcEEEEEEecCC--C-EEEeeCCCcEEEEeCCC
Q 003171 218 WKMNARLLD-SDDGFGEVLSWQAHRGPVLSLCISSYG--D-LWSGSEGGGIKIWPWEA 271 (842)
Q Consensus 218 Wdl~~g~~~-~~~~~~~~~~l~gH~~~V~slafs~dG--~-L~SgS~DgtIrvWd~~t 271 (842)
|.=....-+ ...+...+.++..-+..|+.|.|.|-- - |++++.||+|||++.-.
T Consensus 88 WEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~d 145 (361)
T KOG2445|consen 88 WEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPD 145 (361)
T ss_pred eeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCC
Confidence 974211000 012334455667778999999999964 2 78999999999999744
|
|
| >KOG0289 consensus mRNA splicing factor [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.45 E-value=1.6e-11 Score=131.83 Aligned_cols=230 Identities=13% Similarity=0.130 Sum_probs=166.5
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCCC-EEEeeCCCcEEEEeC
Q 003171 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPW 269 (842)
Q Consensus 191 ~~~V~~la~dpdg~~LaSGs~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~ 269 (842)
.-.|+.+.++|+...++++|.|-.||+|..... .+......|.++|+.+...|.|+ |+++|.|++.-.-|.
T Consensus 261 ~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~--------s~~~~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~ 332 (506)
T KOG0289|consen 261 TKKITSVKFHKDLDTVITASADEIIRVWSVPLS--------SEPTSSRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDI 332 (506)
T ss_pred ceEEEEEEeccchhheeecCCcceEEeeccccc--------cCccccccccccceeeeeccCCcEEEEecCCceEEEEEc
Confidence 568999999999999999999999999998775 45566789999999999999998 899999999988888
Q ss_pred CCccceeecCCCceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcCCCCEEEEeC-CCcEEEEEccCCcEEEEe
Q 003171 270 EAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVF 348 (842)
Q Consensus 270 ~t~~~~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s-~~tI~lWD~~tg~~l~~l 348 (842)
.++........+. . .-.+.+.++.++|-.+..+. ++.++|||+.++.....|
T Consensus 333 ~~g~~lt~vs~~~---------------------s------~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks~~~~a~F 385 (506)
T KOG0289|consen 333 SSGSQLTVVSDET---------------------S------DVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQTNVAKF 385 (506)
T ss_pred cCCcEEEEEeecc---------------------c------cceeEEeeEcCCceEEeccCCCceEEEEEcCCccccccC
Confidence 7654322211100 0 11356677877777776666 568999999998876667
Q ss_pred ecCCceEeeeecccCCCcccccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEee-c-----Cccc-cCCCc
Q 003171 349 NIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAA-K-----GGFG-DDNRR 421 (842)
Q Consensus 349 ~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~-~-----g~~~-~~~~~ 421 (842)
.+|...+ .++.|..++-...+++.++-.++|. + .++. .....
T Consensus 386 pght~~v-------------------------------k~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l~~~~~ 434 (506)
T KOG0289|consen 386 PGHTGPV-------------------------------KAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQLDEKKE 434 (506)
T ss_pred CCCCCce-------------------------------eEEEeccCceEEEEEecCCeEEEEEehhhcccceeecccccc
Confidence 6654432 2356666666666677776333333 1 1111 23346
Q ss_pred eEEEEECCCCc-EEEEeCCCeEEEEcC-C--CCeeeeeecCCccEEEEEe--cCCEEEEEecCcEEEEEeC
Q 003171 422 TEALTTSIDGM-IWTGGANGLLLQWDP-N--GNRLQDFQYLPFAVQCLCT--FGSQIWVGYMNGIVQVLDL 486 (842)
Q Consensus 422 v~al~~s~dg~-l~Sgs~DgtIrlWD~-~--g~~l~~l~~H~~~V~sls~--dG~~LasGs~DgtIrlWD~ 486 (842)
+.++.|++-|+ |++++.|=.|.+.+- + -.++.++..|++..+++.+ ..+++++++.|..++|+-+
T Consensus 435 v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~k~W~~~~~~~~~sg~st~v~Fg~~aq~l~s~smd~~l~~~a~ 505 (506)
T KOG0289|consen 435 VNSLSFDQSGTYLGIAGSDLQVYICKKKTKSWTEIKELADHSGLSTGVRFGEHAQYLASTSMDAILRLYAL 505 (506)
T ss_pred ceeEEEcCCCCeEEeecceeEEEEEecccccceeeehhhhcccccceeeecccceEEeeccchhheEEeec
Confidence 88999999998 677766655555554 2 2577778888888888877 4579999999999988754
|
|
| >KOG0649 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.44 E-value=2.7e-11 Score=121.60 Aligned_cols=179 Identities=18% Similarity=0.247 Sum_probs=126.5
Q ss_pred CceeEEEEecCCEEEEecCCCEEEEeCCCCcc-ccccccccccCCCCCCCCCCeee-eeecCCCeEEEEEcCCCCEEEEE
Q 003171 132 GCFLRTIVCTEEQLWAGGENGLRVWNLKELYD-ESESDSVSVSKSKGEDGTAPFKE-SVKGVSSVMCMVGDEASGVVWSG 209 (842)
Q Consensus 132 ~~~~~~l~~~~~~l~~~~D~~vrvWdl~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~V~~la~dpdg~~LaSG 209 (842)
.-+++.++++.+.|..+.||-||=|.-.+... ..+ .+-=+...|++. .+. ...|.+|-++|..+-|..+
T Consensus 62 dgpiy~~~f~d~~Lls~gdG~V~gw~W~E~~es~~~--------K~lwe~~~P~~~~~~e-vPeINam~ldP~enSi~~A 132 (325)
T KOG0649|consen 62 DGPIYYLAFHDDFLLSGGDGLVYGWEWNEEEESLAT--------KRLWEVKIPMQVDAVE-VPEINAMWLDPSENSILFA 132 (325)
T ss_pred CCCeeeeeeehhheeeccCceEEEeeehhhhhhccc--------hhhhhhcCccccCccc-CCccceeEeccCCCcEEEe
Confidence 34788999998899999999999998754332 111 111122233322 111 4468999999988888888
Q ss_pred eCCCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEE-ecCCCEEEeeCCCcEEEEeCCCccceeecCCCceeeeEE
Q 003171 210 HRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCI-SSYGDLWSGSEGGGIKIWPWEAIEKALSLKPEERHTAAL 288 (842)
Q Consensus 210 s~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slaf-s~dG~L~SgS~DgtIrvWd~~t~~~~l~~~~~~~~~~~l 288 (842)
+-|+.+.-||+++| +-.++++||++.|.+|+- +.+++++||++|||+||||..++++...+.+... -.
T Consensus 133 gGD~~~y~~dlE~G--------~i~r~~rGHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~-~~-- 201 (325)
T KOG0649|consen 133 GGDGVIYQVDLEDG--------RIQREYRGHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKN-PN-- 201 (325)
T ss_pred cCCeEEEEEEecCC--------EEEEEEcCCcceeeeeeecccCcceeecCCCccEEEEeccccceeEEeccccC-hh--
Confidence 89999999999998 677889999999999998 7778999999999999999988654333221100 00
Q ss_pred EEeeceeecccceeccceeeee--cCCEEEEEEcCCCCEEEEeCCCcEEEEEccCCcEEEEeec
Q 003171 289 IVERSYIDLRSHLSVNGFSSIL--TSDIKNLLSDHSRAKVWSAGFLSFALWDARTRELLKVFNI 350 (842)
Q Consensus 289 ~~~~s~~~l~~~~~~~~~~~~~--s~~v~~las~~~~~~v~s~s~~tI~lWD~~tg~~l~~l~~ 350 (842)
+..| ..-+-+++. +...+.|++...+.||.+++-++..+|..
T Consensus 202 ------------------~lRp~~g~wigala~--~edWlvCGgGp~lslwhLrsse~t~vfpi 245 (325)
T KOG0649|consen 202 ------------------LLRPDWGKWIGALAV--NEDWLVCGGGPKLSLWHLRSSESTCVFPI 245 (325)
T ss_pred ------------------hcCcccCceeEEEec--cCceEEecCCCceeEEeccCCCceEEEec
Confidence 0011 112334444 45678888878899999999888777653
|
|
| >KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.1e-11 Score=128.80 Aligned_cols=252 Identities=15% Similarity=0.192 Sum_probs=169.4
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEEECCCCcc----CCCCCcceeEEecc-cCCcEEEEEEe-------cCCCE-EEeeC
Q 003171 194 VMCMVGDEASGVVWSGHRDGRIMCWKMNARLL----DSDDGFGEVLSWQA-HRGPVLSLCIS-------SYGDL-WSGSE 260 (842)
Q Consensus 194 V~~la~dpdg~~LaSGs~DGtIrlWdl~~g~~----~~~~~~~~~~~l~g-H~~~V~slafs-------~dG~L-~SgS~ 260 (842)
...+.++|||.-|.+-+.|..+++|++..... +....+.+..+++= -...|..-++= |+..| ++.|.
T Consensus 52 ~kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ssr 131 (406)
T KOG2919|consen 52 LKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVSSR 131 (406)
T ss_pred hccceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeeccc
Confidence 34578999999999999999999999865311 00011111111111 12345555542 44445 57889
Q ss_pred CCcEEEEeCCCccceeecCCCceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcCCCCEEEEeCCCcEEEEEc-
Q 003171 261 GGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGFLSFALWDA- 339 (842)
Q Consensus 261 DgtIrvWd~~t~~~~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s~~tI~lWD~- 339 (842)
|.-|++||.-+++...++..... +.. -....+|+++++|..|.++-..+|+++|+
T Consensus 132 ~~PIh~wdaftG~lraSy~~ydh-------------------~de-----~taAhsL~Fs~DGeqlfaGykrcirvFdt~ 187 (406)
T KOG2919|consen 132 DQPIHLWDAFTGKLRASYRAYDH-------------------QDE-----YTAAHSLQFSPDGEQLFAGYKRCIRVFDTS 187 (406)
T ss_pred cCceeeeeccccccccchhhhhh-------------------HHh-----hhhheeEEecCCCCeEeecccceEEEeecc
Confidence 99999999987654433322111 111 01234788999999999887789999998
Q ss_pred cCCcEEEEeecCCceEeeeecccCCCcccccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEeecCccccCC
Q 003171 340 RTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDN 419 (842)
Q Consensus 340 ~tg~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~ 419 (842)
++|....+.. ...+ |. .+..
T Consensus 188 RpGr~c~vy~-----------------------------t~~~------------------------------~k-~gq~ 207 (406)
T KOG2919|consen 188 RPGRDCPVYT-----------------------------TVTK------------------------------GK-FGQK 207 (406)
T ss_pred CCCCCCcchh-----------------------------hhhc------------------------------cc-cccc
Confidence 5554211110 0000 00 0122
Q ss_pred CceEEEEECCCC--cEEEEeCCCeEEEEcC-CCCeeeeeecCCccEEEE--EecCCEEEEEec-CcEEEEEeCC--Cccc
Q 003171 420 RRTEALTTSIDG--MIWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQCL--CTFGSQIWVGYM-NGIVQVLDLE--GNLL 491 (842)
Q Consensus 420 ~~v~al~~s~dg--~l~Sgs~DgtIrlWD~-~g~~l~~l~~H~~~V~sl--s~dG~~LasGs~-DgtIrlWD~~--g~~i 491 (842)
+.+.+++++|-. .++.|+--.++-|+.- .++.++.+-+|.+.|+-+ .+||.+|++|+. |-.|-+||++ +..+
T Consensus 208 giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~pv 287 (406)
T KOG2919|consen 208 GIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSRDPV 287 (406)
T ss_pred ceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeehhccchh
Confidence 334567777753 4788887778888877 567888888999999976 569999999995 8899999987 5678
Q ss_pred ccccccccCE-----EEEEeCCCEEEEEcCCCCeeeccccCCC
Q 003171 492 GGWVAHSSPV-----IKMAVGAGYIFTLANHGGIRGWNVTSPG 529 (842)
Q Consensus 492 ~~l~gH~~~V-----~sla~dg~~l~S~S~DgtIrvWd~~~~~ 529 (842)
-.|..|.+.- ..++++++.|+||++||.|++||+..++
T Consensus 288 ~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~g 330 (406)
T KOG2919|consen 288 YALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLG 330 (406)
T ss_pred hhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCC
Confidence 8888887732 2345789999999999999999987754
|
|
| >KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.43 E-value=6.1e-13 Score=157.29 Aligned_cols=242 Identities=16% Similarity=0.215 Sum_probs=171.5
Q ss_pred CeEEEEEcCCC----CEEEEEeCCCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCCC--EEEeeCCCcEEE
Q 003171 193 SVMCMVGDEAS----GVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD--LWSGSEGGGIKI 266 (842)
Q Consensus 193 ~V~~la~dpdg----~~LaSGs~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~--L~SgS~DgtIrv 266 (842)
.-.+|+|.+-| ++||.|..||.|.+||...-. .......+.+..-|+++|..|-|.+.+. |+||+.||.|.|
T Consensus 66 rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~--~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~i 143 (1049)
T KOG0307|consen 66 RFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASII--ANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILI 143 (1049)
T ss_pred cceeeeecccCCCccceeeccccCCceEEecchhhc--cCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEE
Confidence 44567777655 459999999999999976510 0122234566788999999999999865 789999999999
Q ss_pred EeCCCccceeecCCCceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcCCCC-EEEEeCC-CcEEEEEccCCcE
Q 003171 267 WPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRA-KVWSAGF-LSFALWDARTREL 344 (842)
Q Consensus 267 Wd~~t~~~~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~-~v~s~s~-~tI~lWD~~tg~~ 344 (842)
||+...+..+... . . .+..+|++++=...-. .++|++. +.+.|||++..+.
T Consensus 144 WDlnn~~tP~~~~-~------------------~--------~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~p 196 (1049)
T KOG0307|consen 144 WDLNKPETPFTPG-S------------------Q--------APPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKP 196 (1049)
T ss_pred eccCCcCCCCCCC-C------------------C--------CCcccceEeccchhhhHHhhccCCCCCceeccccCCCc
Confidence 9996533222110 0 0 0134566655432222 3455554 4788999987665
Q ss_pred EEEeecCCceEeeeecccCCCcccccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEeecCccccCCCceEE
Q 003171 345 LKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEA 424 (842)
Q Consensus 345 l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~a 424 (842)
+..|..++. ...+..
T Consensus 197 ii~ls~~~~-----------------------------------------------------------------~~~~S~ 211 (1049)
T KOG0307|consen 197 IIKLSDTPG-----------------------------------------------------------------RMHCSV 211 (1049)
T ss_pred ccccccCCC-----------------------------------------------------------------ccceee
Confidence 433321110 001223
Q ss_pred EEECCCC--cEEEEeCCC---eEEEEcCC--CCeeeeeecCCccEEEEEe---cCCEEEEEecCcEEEEEeCC-Cccccc
Q 003171 425 LTTSIDG--MIWTGGANG---LLLQWDPN--GNRLQDFQYLPFAVQCLCT---FGSQIWVGYMNGIVQVLDLE-GNLLGG 493 (842)
Q Consensus 425 l~~s~dg--~l~Sgs~Dg---tIrlWD~~--g~~l~~l~~H~~~V~sls~---dG~~LasGs~DgtIrlWD~~-g~~i~~ 493 (842)
|++.|+. +|++++.|. .|.+||+. ...++++++|...|.+++. |.++|+|++.|+.|.+|+.+ |+.+..
T Consensus 212 l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~ 291 (1049)
T KOG0307|consen 212 LAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGE 291 (1049)
T ss_pred eeeCCCCceeeeeecCCCCCceeEeecccccCCchhhhcccccceeeeccCCCCchhhhcccCCCCeeEecCCCceEeee
Confidence 5566665 377777654 69999993 5788999999999999964 55799999999999999997 788999
Q ss_pred ccccccCEEEEEe---CCCEEEEEcCCCCeeeccccCC
Q 003171 494 WVAHSSPVIKMAV---GAGYIFTLANHGGIRGWNVTSP 528 (842)
Q Consensus 494 l~gH~~~V~sla~---dg~~l~S~S~DgtIrvWd~~~~ 528 (842)
+....+++..+.+ ++..++.++-||.|.|..+...
T Consensus 292 ~p~~~nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~~~ 329 (1049)
T KOG0307|consen 292 LPAQGNWCFDVQWCPRNPSVMAAASFDGKISIYSLQGT 329 (1049)
T ss_pred cCCCCcceeeeeecCCCcchhhhheeccceeeeeeecC
Confidence 9888899999986 5567889999999999998763
|
|
| >KOG0269 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.42 E-value=1.8e-12 Score=147.33 Aligned_cols=217 Identities=15% Similarity=0.234 Sum_probs=150.0
Q ss_pred ecCCCEEEEeCCCCccccccccccccCCCCCCCCCCeeeeeecCCCeEEEEEcCC-CCEEEEEeCCCcEEEEECCCCccC
Q 003171 148 GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEA-SGVVWSGHRDGRIMCWKMNARLLD 226 (842)
Q Consensus 148 ~~D~~vrvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~V~~la~dpd-g~~LaSGs~DGtIrlWdl~~g~~~ 226 (842)
+..|.|-+||+....... ....|.+ | ...|.|+.|++- -.+|.|||+||+||+||+...
T Consensus 107 s~nG~i~vWdlnk~~rnk--------------~l~~f~E--H-~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~--- 166 (839)
T KOG0269|consen 107 STNGVISVWDLNKSIRNK--------------LLTVFNE--H-ERSANKLDFHSTEPNILISGSQDGTVKCWDLRSK--- 166 (839)
T ss_pred cCCCcEEEEecCccccch--------------hhhHhhh--h-ccceeeeeeccCCccEEEecCCCceEEEEeeecc---
Confidence 668999999996531110 0012444 3 678999999873 489999999999999999875
Q ss_pred CCCCcceeEEecccCCcEEEEEEecC-C-CEEEeeCCCcEEEEeCCCccceeecCCCceeeeEEEEeeceeecccceecc
Q 003171 227 SDDGFGEVLSWQAHRGPVLSLCISSY-G-DLWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVN 304 (842)
Q Consensus 227 ~~~~~~~~~~l~gH~~~V~slafs~d-G-~L~SgS~DgtIrvWd~~t~~~~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~ 304 (842)
....++.+...+|..|.|+|. + .++++.+.|.+++||+..-... ...+.+|
T Consensus 167 -----~S~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~------------------~~k~~AH---- 219 (839)
T KOG0269|consen 167 -----KSKSTFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRC------------------EKKLTAH---- 219 (839)
T ss_pred -----cccccccccchhhhceeeccCCCceEEEecCCceEEEeeccCchhH------------------HHHhhcc----
Confidence 456677888899999999984 3 3889999999999999542111 0112223
Q ss_pred ceeeeecCCEEEEEEcCCCCEEEEeC-CCcEEEEEccCCcEEEEeecCCceEeeeecccCCCcccccceEEEEEecCCCC
Q 003171 305 GFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKD 383 (842)
Q Consensus 305 ~~~~~~s~~v~~las~~~~~~v~s~s-~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~ 383 (842)
.+.|.++--.|++..|++|+ |++|+|||..+++.-.....+
T Consensus 220 ------~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~~~~~tIn-------------------------------- 261 (839)
T KOG0269|consen 220 ------NGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRAKPKHTIN-------------------------------- 261 (839)
T ss_pred ------cCceEEEeecCCCceeeecCCCccEEEEeccCCCccceeEEe--------------------------------
Confidence 55677888888888888887 789999999765431110000
Q ss_pred ccceeeeEeecCcceEEecCCcEEEEeecCccccCCCceEEEEECCCC--cEEEEe--CCCeEEEEcCCC--Ceeeeeec
Q 003171 384 KAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDG--MIWTGG--ANGLLLQWDPNG--NRLQDFQY 457 (842)
Q Consensus 384 ~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~al~~s~dg--~l~Sgs--~DgtIrlWD~~g--~~l~~l~~ 457 (842)
....|..|.+-|+. .|++++ .|-.|++||+.. -.-.+|..
T Consensus 262 ----------------------------------Tiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~e 307 (839)
T KOG0269|consen 262 ----------------------------------TIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPYATFLE 307 (839)
T ss_pred ----------------------------------ecceeeeeeeccCccchhhhhhccccceEEEEeeccccccceeeec
Confidence 00011122232332 266655 377899999964 45678899
Q ss_pred CCccEEEEEecC---CEEEEEecCcEEEE
Q 003171 458 LPFAVQCLCTFG---SQIWVGYMNGIVQV 483 (842)
Q Consensus 458 H~~~V~sls~dG---~~LasGs~DgtIrl 483 (842)
|+..|+.++.++ ..+|+++.|++|..
T Consensus 308 H~~~vt~i~W~~~d~~~l~s~sKD~tv~q 336 (839)
T KOG0269|consen 308 HTDSVTGIAWDSGDRINLWSCSKDGTVLQ 336 (839)
T ss_pred cCccccceeccCCCceeeEeecCccHHHH
Confidence 999999998754 48999999998753
|
|
| >COG2319 FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.42 E-value=1e-10 Score=128.79 Aligned_cols=235 Identities=23% Similarity=0.361 Sum_probs=170.5
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEecccCC-cEEEEEE-ecCCC-E-EE-eeCCCcEE
Q 003171 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRG-PVLSLCI-SSYGD-L-WS-GSEGGGIK 265 (842)
Q Consensus 191 ~~~V~~la~dpdg~~LaSGs~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~-~V~slaf-s~dG~-L-~S-gS~DgtIr 265 (842)
...+.++.+++.+..+..++.|+.+.+|+...+. .....+.++.. .+..+.+ ++++. + .. +..|++++
T Consensus 65 ~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 137 (466)
T COG2319 65 EDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGE-------KLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVK 137 (466)
T ss_pred cceEEEEEECCCCcEEEEecCCCcEEEEEcCCCc-------eeEEEEeccCCCceeeEEEECCCcceEEeccCCCCccEE
Confidence 6789999999999999999999999999998851 25666777544 7888888 77776 4 34 34499999
Q ss_pred EEeCCC-ccceeecCCCceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcCCCCEEEEeC--CCcEEEEEccCC
Q 003171 266 IWPWEA-IEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG--FLSFALWDARTR 342 (842)
Q Consensus 266 vWd~~t-~~~~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s--~~tI~lWD~~tg 342 (842)
+|+... ......+. .| ...+..+.+.+.+..+.+++ +..+++|++.++
T Consensus 138 ~~~~~~~~~~~~~~~-------------------~~----------~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (466)
T COG2319 138 LWDLSTPGKLIRTLE-------------------GH----------SESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTG 188 (466)
T ss_pred EEEecCCCeEEEEEe-------------------cC----------cccEEEEEECCCCCEEEecCCCCCceEEEEcCCC
Confidence 999865 21111111 11 33455677777666555554 678999999875
Q ss_pred cEEEEeecCCceEeeeecccCCCcccccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEeecCccccCCCce
Q 003171 343 ELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRT 422 (842)
Q Consensus 343 ~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v 422 (842)
..+..+.. |...+
T Consensus 189 ~~~~~~~~-------------------------------------------------------------------~~~~v 201 (466)
T COG2319 189 KPLSTLAG-------------------------------------------------------------------HTDPV 201 (466)
T ss_pred ceEEeecc-------------------------------------------------------------------CCCce
Confidence 55444322 22334
Q ss_pred EEEEECCCCc-EE-EEeCCCeEEEEcC-CCCeee-eeecCCcc-EEEEEecCCEEEEEecCcEEEEEeCCC-c-cccccc
Q 003171 423 EALTTSIDGM-IW-TGGANGLLLQWDP-NGNRLQ-DFQYLPFA-VQCLCTFGSQIWVGYMNGIVQVLDLEG-N-LLGGWV 495 (842)
Q Consensus 423 ~al~~s~dg~-l~-Sgs~DgtIrlWD~-~g~~l~-~l~~H~~~-V~sls~dG~~LasGs~DgtIrlWD~~g-~-~i~~l~ 495 (842)
..++++|++. ++ +++.|++|++||. .+.++. .+.+|... +.++.+++.++++++.|+.+++||... . .+..+.
T Consensus 202 ~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~ 281 (466)
T COG2319 202 SSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSVVSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLS 281 (466)
T ss_pred EEEEEcCCcceEEEEecCCCcEEEEECCCCcEEeeecCCCCcceeEeECCCCCEEEEecCCCcEEEeeecCCCcEEEEEe
Confidence 4566667775 44 4488999999998 588888 68888887 555677888888999999999999873 2 244447
Q ss_pred ccccCEEEEEe--CCCEEEEEcCCCCeeeccccCC
Q 003171 496 AHSSPVIKMAV--GAGYIFTLANHGGIRGWNVTSP 528 (842)
Q Consensus 496 gH~~~V~sla~--dg~~l~S~S~DgtIrvWd~~~~ 528 (842)
+|...|.++.+ ++..+++++.|+.+++|+....
T Consensus 282 ~~~~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 316 (466)
T COG2319 282 GHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETG 316 (466)
T ss_pred cCCccEEEEEECCCCCEEEEeeCCCcEEEEEcCCC
Confidence 89999999875 4578888999999999987654
|
|
| >KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.42 E-value=7.4e-13 Score=150.96 Aligned_cols=267 Identities=18% Similarity=0.190 Sum_probs=167.3
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCCC-EEEeeCCCcEEEEeC
Q 003171 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPW 269 (842)
Q Consensus 191 ~~~V~~la~dpdg~~LaSGs~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~ 269 (842)
.++|+|++||..|.+|.+|+.|..+|||.++++ .+..+..||.+.|+.++.+.+.. ++++|.|..||||-+
T Consensus 190 ~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~--------~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl 261 (1113)
T KOG0644|consen 190 RNAVYCAIFDRTGRYIITGSDDRLVKIWSMETA--------RCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRL 261 (1113)
T ss_pred hhheeeeeeccccceEeecCccceeeeeeccch--------hhhccCCCCccccchhccchhhhhhhhcccCceEEEEec
Confidence 789999999999999999999999999999997 67888999999999999998776 689999999999998
Q ss_pred CCccceeecCCCceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcCCCCEEEEeCCCcEEEEEccCCcEEEEee
Q 003171 270 EAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGFLSFALWDARTRELLKVFN 349 (842)
Q Consensus 270 ~t~~~~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s~~tI~lWD~~tg~~l~~l~ 349 (842)
.++...- .+++| ++.|+.+++++-. .++.++|+++||.+ -+.+. +.
T Consensus 262 ~~~~pvs-------------------vLrgh----------tgavtaiafsP~~---sss~dgt~~~wd~r-~~~~~-y~ 307 (1113)
T KOG0644|consen 262 PDGAPVS-------------------VLRGH----------TGAVTAIAFSPRA---SSSDDGTCRIWDAR-LEPRI-YV 307 (1113)
T ss_pred CCCchHH-------------------HHhcc----------ccceeeeccCccc---cCCCCCceEecccc-ccccc-cC
Confidence 7643211 13334 5567778887633 34446899999987 11111 11
Q ss_pred cCCceEeeeecccCCCcccccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEeecCccccCCCceEEEEECC
Q 003171 350 IDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSI 429 (842)
Q Consensus 350 ~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~al~~s~ 429 (842)
+.+. .+.. .. ...++-|..+.....+|+.++..+.+.--.+..+...+.-+..+.
T Consensus 308 prp~-----~~~~--~~------------------~~~s~~~~~~~~~f~Tgs~d~ea~n~e~~~l~~~~~~lif~t~ss 362 (1113)
T KOG0644|consen 308 PRPL-----KFTE--KD------------------LVDSILFENNGDRFLTGSRDGEARNHEFEQLAWRSNLLIFVTRSS 362 (1113)
T ss_pred CCCC-----Cccc--cc------------------ceeeeeccccccccccccCCcccccchhhHhhhhccceEEEeccc
Confidence 1000 0000 00 000001111111112222222111111000111111111122222
Q ss_pred C--CcEEEEeCCCeEEEEcC-CCCeeeeeecCCccEEEEEe---cCCEEEEEecCcEEEEEeCC-Ccccc-cccccccCE
Q 003171 430 D--GMIWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQCLCT---FGSQIWVGYMNGIVQVLDLE-GNLLG-GWVAHSSPV 501 (842)
Q Consensus 430 d--g~l~Sgs~DgtIrlWD~-~g~~l~~l~~H~~~V~sls~---dG~~LasGs~DgtIrlWD~~-g~~i~-~l~gH~~~V 501 (842)
| ...+++-.+.-+++|++ +|..++.+.+|...+..+.+ +.+...+++.||.+-|||.. |-.++ -+.+|...|
T Consensus 363 d~~~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~pik~y~~gh~kl~ 442 (1113)
T KOG0644|consen 363 DLSSIVVTARNDHRLCVWNLYTGQLLHNLMGHSDEVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGIPIKHYFIGHGKLV 442 (1113)
T ss_pred cccccceeeeeeeEeeeeecccchhhhhhcccccceeeeeecCCCcHhhhhccCCCceEeeecccCCcceeeecccceee
Confidence 2 12455556777999999 89999999999998887754 34455688899999999985 75544 346787777
Q ss_pred EEE-EeCCCEEEEEcCCCCeeecc
Q 003171 502 IKM-AVGAGYIFTLANHGGIRGWN 524 (842)
Q Consensus 502 ~sl-a~dg~~l~S~S~DgtIrvWd 524 (842)
.+- ..||+.++-....|.+.+..
T Consensus 443 d~kFSqdgts~~lsd~hgql~i~g 466 (1113)
T KOG0644|consen 443 DGKFSQDGTSIALSDDHGQLYILG 466 (1113)
T ss_pred ccccCCCCceEecCCCCCceEEec
Confidence 663 35777766555566666655
|
|
| >KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.41 E-value=7.6e-12 Score=138.69 Aligned_cols=257 Identities=14% Similarity=0.128 Sum_probs=154.9
Q ss_pred eeEEecccCCcEEEEEEecCCC-EEEeeCCCcEEEEeCCCccceeecCCCceeeeEEEEeeceeecccceeccceeeeec
Q 003171 233 EVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILT 311 (842)
Q Consensus 233 ~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~~t~~~~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s 311 (842)
+...++||++.|.+|..+|.|. |+|||.|||||||.+.|+.+..+... .
T Consensus 392 ~~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~~------------------------------d 441 (733)
T KOG0650|consen 392 CALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQF------------------------------D 441 (733)
T ss_pred eeeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEee------------------------------c
Confidence 3455799999999999999998 89999999999999988765432221 2
Q ss_pred CCEEEEEEcCCCC--EEEEeCCCcEEEEEccCCcEEEE------eecCCceEeeeecccCCCccc--------ccceEEE
Q 003171 312 SDIKNLLSDHSRA--KVWSAGFLSFALWDARTRELLKV------FNIDGQIENRVDMSLLPDFAM--------EDEFKTK 375 (842)
Q Consensus 312 ~~v~~las~~~~~--~v~s~s~~tI~lWD~~tg~~l~~------l~~~~~~~~~~~~s~~~~~~~--------~~~~~~~ 375 (842)
+.|++++..+... .|+.+....+.|-+..=|..+.. |..-... .....+...+ +..+++.
T Consensus 442 ~~I~~vaw~P~~~~~vLAvA~~~~~~ivnp~~G~~~e~~~t~ell~~~~~~----~~p~~~~~~W~~~~~~e~~~~v~~~ 517 (733)
T KOG0650|consen 442 SEIRSVAWNPLSDLCVLAVAVGECVLIVNPIFGDRLEVGPTKELLASAPNE----SEPDAAVVTWSRASLDELEKGVCIV 517 (733)
T ss_pred ceeEEEEecCCCCceeEEEEecCceEEeCccccchhhhcchhhhhhcCCCc----cCCcccceeechhhhhhhccceEEE
Confidence 2355555554332 23333222333433333321111 0000000 0000000011 0001111
Q ss_pred EEecCCCCccceeeeEeecCcceEEecCC-cE--EEEee--c----CccccCCCceEEEEECCCCc-EEEEeCCCeEEEE
Q 003171 376 IVTSSKKDKAQSSFGFFQRSRNAIMGAAD-AV--RRVAA--K----GGFGDDNRRTEALTTSIDGM-IWTGGANGLLLQW 445 (842)
Q Consensus 376 ~~s~~~~~~~~~s~~~~~~~~~~~~g~~~-~v--~~v~~--~----g~~~~~~~~v~al~~s~dg~-l~Sgs~DgtIrlW 445 (842)
+ +..+.+..+....++....+-..+ +. ..+.. + -.|....+.|.++.|.|-.- ++.++ ...||++
T Consensus 518 I----~~~k~i~~vtWHrkGDYlatV~~~~~~~~VliHQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaT-q~~vRiY 592 (733)
T KOG0650|consen 518 I----KHPKSIRQVTWHRKGDYLATVMPDSGNKSVLIHQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVAT-QRSVRIY 592 (733)
T ss_pred E----ecCCccceeeeecCCceEEEeccCCCcceEEEEecccccccCchhhcCCceeEEEecCCCceEEEEe-ccceEEE
Confidence 1 112233334444444433322221 11 11111 1 12333445677788887654 66665 5569999
Q ss_pred cC-CCCeeeeeecCCccEEEEEe--cCCEEEEEecCcEEEEEeCC--CcccccccccccCEEEEEeCCCE--EEEEcCCC
Q 003171 446 DP-NGNRLQDFQYLPFAVQCLCT--FGSQIWVGYMNGIVQVLDLE--GNLLGGWVAHSSPVIKMAVGAGY--IFTLANHG 518 (842)
Q Consensus 446 D~-~g~~l~~l~~H~~~V~sls~--dG~~LasGs~DgtIrlWD~~--g~~i~~l~gH~~~V~sla~dg~~--l~S~S~Dg 518 (842)
|+ .++.++.+.....+|.+++. .|..|+.|+.|+.+..+|+. .+..+++.-|...|.+|++++++ ++|||.|+
T Consensus 593 dL~kqelvKkL~tg~kwiS~msihp~GDnli~gs~d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~ryPLfas~sdDg 672 (733)
T KOG0650|consen 593 DLSKQELVKKLLTGSKWISSMSIHPNGDNLILGSYDKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYPLFASGSDDG 672 (733)
T ss_pred ehhHHHHHHHHhcCCeeeeeeeecCCCCeEEEecCCCeeEEEEcccCcchhHHhhhhhhhhhhhhhccccceeeeecCCC
Confidence 99 77778887777778887764 68999999999999999986 67999999999999999998885 77999999
Q ss_pred CeeeccccCC
Q 003171 519 GIRGWNVTSP 528 (842)
Q Consensus 519 tIrvWd~~~~ 528 (842)
++.|+--..|
T Consensus 673 tv~Vfhg~VY 682 (733)
T KOG0650|consen 673 TVIVFHGMVY 682 (733)
T ss_pred cEEEEeeeee
Confidence 9999875444
|
|
| >KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown] | Back alignment and domain information |
|---|
Probab=99.41 E-value=2.9e-10 Score=124.15 Aligned_cols=267 Identities=16% Similarity=0.192 Sum_probs=164.6
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEeccc-CCcEEEEEEecCCCEEEeeCCCcEEEEeC
Q 003171 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAH-RGPVLSLCISSYGDLWSGSEGGGIKIWPW 269 (842)
Q Consensus 191 ~~~V~~la~dpdg~~LaSGs~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH-~~~V~slafs~dG~L~SgS~DgtIrvWd~ 269 (842)
...|....|.|.+..|..-.-.|.+-.|+..++. -++..-.+++| +.-|.||+|.++|+.+||-.+|+|-||+.
T Consensus 200 ne~v~~a~FHPtd~nliit~Gk~H~~Fw~~~~~~-----l~k~~~~fek~ekk~Vl~v~F~engdviTgDS~G~i~Iw~~ 274 (626)
T KOG2106|consen 200 NEVVFLATFHPTDPNLIITCGKGHLYFWTLRGGS-----LVKRQGIFEKREKKFVLCVTFLENGDVITGDSGGNILIWSK 274 (626)
T ss_pred cceEEEEEeccCCCcEEEEeCCceEEEEEccCCc-----eEEEeeccccccceEEEEEEEcCCCCEEeecCCceEEEEeC
Confidence 3467888999976555555556889999998862 22333445555 46899999999999999999999999998
Q ss_pred CCccceeecCCCceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcCCCCEEEEeC-CCcEEEEEccCCcEEEEe
Q 003171 270 EAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVF 348 (842)
Q Consensus 270 ~t~~~~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s-~~tI~lWD~~tg~~l~~l 348 (842)
.+..-.... +++ ...|-+|..-.+| ++.|++ |+.|.+||-.-.+ ++..
T Consensus 275 ~~~~~~k~~---------------------~aH--------~ggv~~L~~lr~G-tllSGgKDRki~~Wd~~y~k-~r~~ 323 (626)
T KOG2106|consen 275 GTNRISKQV---------------------HAH--------DGGVFSLCMLRDG-TLLSGGKDRKIILWDDNYRK-LRET 323 (626)
T ss_pred CCceEEeEe---------------------eec--------CCceEEEEEecCc-cEeecCccceEEeccccccc-cccc
Confidence 552211110 111 3345556655444 455555 6789999922111 1111
Q ss_pred ecCCceEeeeecccCCCcccccceEEEEEecCCCCccceeeeEeecCcceEEecCCc-EEEEeecC----ccccCCCceE
Q 003171 349 NIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADA-VRRVAAKG----GFGDDNRRTE 423 (842)
Q Consensus 349 ~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~-v~~v~~~g----~~~~~~~~v~ 423 (842)
+...+. . . ++.+...+ ...++|+... +..-.... ...+|.....
T Consensus 324 elPe~~-----------G----~--iRtv~e~~--------------~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delw 372 (626)
T KOG2106|consen 324 ELPEQF-----------G----P--IRTVAEGK--------------GDILVGTTRNFILQGTLENGFTLTVQGHGDELW 372 (626)
T ss_pred cCchhc-----------C----C--eeEEecCC--------------CcEEEeeccceEEEeeecCCceEEEEeccccee
Confidence 111100 0 0 01111111 1123333221 11111111 1234666677
Q ss_pred EEEECCCC-cEEEEeCCCeEEEEcCCCCeeeeeecCCccEEEEEe--cCCEEEEEecCcEEEEEeCCCcccccccccccC
Q 003171 424 ALTTSIDG-MIWTGGANGLLLQWDPNGNRLQDFQYLPFAVQCLCT--FGSQIWVGYMNGIVQVLDLEGNLLGGWVAHSSP 500 (842)
Q Consensus 424 al~~s~dg-~l~Sgs~DgtIrlWD~~g~~l~~l~~H~~~V~sls~--dG~~LasGs~DgtIrlWD~~g~~i~~l~gH~~~ 500 (842)
.++..|+. ++++++.|++++||+ .-+.+=+.. -.+++.|+.+ .| .||.|+..|..-|.|.+.+.+.+..--+.+
T Consensus 373 gla~hps~~q~~T~gqdk~v~lW~-~~k~~wt~~-~~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~~lv~~~~d~~~ 449 (626)
T KOG2106|consen 373 GLATHPSKNQLLTCGQDKHVRLWN-DHKLEWTKI-IEDPAECADFHPSG-VVAVGTATGRWFVLDTETQDLVTIHTDNEQ 449 (626)
T ss_pred eEEcCCChhheeeccCcceEEEcc-CCceeEEEE-ecCceeEeeccCcc-eEEEeeccceEEEEecccceeEEEEecCCc
Confidence 78877764 589999999999999 322221111 1356677755 57 999999999999999986543333333778
Q ss_pred EEEEE--eCCCEEEEEcCCCCeeeccccC
Q 003171 501 VIKMA--VGAGYIFTLANHGGIRGWNVTS 527 (842)
Q Consensus 501 V~sla--~dg~~l~S~S~DgtIrvWd~~~ 527 (842)
++.++ ++|.+++-||.|+.|.++.+..
T Consensus 450 ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~ 478 (626)
T KOG2106|consen 450 LSVVRYSPDGAFLAVGSHDNHIYIYRVSA 478 (626)
T ss_pred eEEEEEcCCCCEEEEecCCCeEEEEEECC
Confidence 88876 6999999999999999998754
|
|
| >COG2319 FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.40 E-value=6.9e-10 Score=122.11 Aligned_cols=273 Identities=22% Similarity=0.366 Sum_probs=178.0
Q ss_pred eeEEEEecCC--EEEE-ecCCCEEEEeCCCCccccccccccccCCCCCCCCCCeeeeeecCCCeEEEEE-cCCCC-EEEE
Q 003171 134 FLRTIVCTEE--QLWA-GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVG-DEASG-VVWS 208 (842)
Q Consensus 134 ~~~~l~~~~~--~l~~-~~D~~vrvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~V~~la~-dpdg~-~LaS 208 (842)
.+..+..... .+.. +.|+.+.+|+......... .+.. .+ ...+..+.+ ++++. .+..
T Consensus 67 ~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~----------------~~~~-~~-~~~~~~~~~~~~~~~~~~~~ 128 (466)
T COG2319 67 SITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIK----------------SLEG-LH-DSSVSKLALSSPDGNSILLA 128 (466)
T ss_pred eEEEEEECCCCcEEEEecCCCcEEEEEcCCCceeEE----------------EEec-cC-CCceeeEEEECCCcceEEec
Confidence 4555555433 3333 4599999999865431100 0000 00 114555555 77777 5555
Q ss_pred EeC-CCcEEEEECCC-CccCCCCCcceeEEecccCCcEEEEEEecCCC-EEEeeC-CCcEEEEeCCCccceeecCCCcee
Q 003171 209 GHR-DGRIMCWKMNA-RLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSE-GGGIKIWPWEAIEKALSLKPEERH 284 (842)
Q Consensus 209 Gs~-DGtIrlWdl~~-g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~-DgtIrvWd~~t~~~~l~~~~~~~~ 284 (842)
.+. |+.+++|+... . .....+.+|...|.+++|+|++. +++++. |+++++|+.........+.
T Consensus 129 ~~~~d~~~~~~~~~~~~--------~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 195 (466)
T COG2319 129 SSSLDGTVKLWDLSTPG--------KLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLA----- 195 (466)
T ss_pred cCCCCccEEEEEecCCC--------eEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEeec-----
Confidence 444 99999999987 3 56777899999999999999997 677775 9999999996522111111
Q ss_pred eeEEEEeeceeecccceeccceeeeecCCEEEEEEcCCCC-EEEE-eCCCcEEEEEccCCcEEE-EeecCCceEeeeecc
Q 003171 285 TAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRA-KVWS-AGFLSFALWDARTRELLK-VFNIDGQIENRVDMS 361 (842)
Q Consensus 285 ~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~-~v~s-~s~~tI~lWD~~tg~~l~-~l~~~~~~~~~~~~s 361 (842)
+ +...+..+...+.+. .+.+ +.+++|++||..++.++. .+..+.
T Consensus 196 --------------~----------~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~--------- 242 (466)
T COG2319 196 --------------G----------HTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHS--------- 242 (466)
T ss_pred --------------c----------CCCceEEEEEcCCcceEEEEecCCCcEEEEECCCCcEEeeecCCCC---------
Confidence 0 133455666665554 4444 346789999887666544 222111
Q ss_pred cCCCcccccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEeecCccccCCCceEEEEECCCC-cEEEEeCCC
Q 003171 362 LLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDG-MIWTGGANG 440 (842)
Q Consensus 362 ~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~al~~s~dg-~l~Sgs~Dg 440 (842)
..+ ...+++++ .+++++.|+
T Consensus 243 ----------------------------------------------------------~~~-~~~~~~~~~~~~~~~~d~ 263 (466)
T COG2319 243 ----------------------------------------------------------DSV-VSSFSPDGSLLASGSSDG 263 (466)
T ss_pred ----------------------------------------------------------cce-eEeECCCCCEEEEecCCC
Confidence 110 01456666 467899999
Q ss_pred eEEEEcCC-CCe-eeeeecCCccEEEEEe--cCCEEEEEecCcEEEEEeCCC-cccccc--cccccCEEEEEeC--CCEE
Q 003171 441 LLLQWDPN-GNR-LQDFQYLPFAVQCLCT--FGSQIWVGYMNGIVQVLDLEG-NLLGGW--VAHSSPVIKMAVG--AGYI 511 (842)
Q Consensus 441 tIrlWD~~-g~~-l~~l~~H~~~V~sls~--dG~~LasGs~DgtIrlWD~~g-~~i~~l--~gH~~~V~sla~d--g~~l 511 (842)
.+++||.. ... +..+.+|...|.++.. ++..+++++.|+.+++||... ...... .+|...|..+.+. +..+
T Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (466)
T COG2319 264 TIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLL 343 (466)
T ss_pred cEEEeeecCCCcEEEEEecCCccEEEEEECCCCCEEEEeeCCCcEEEEEcCCCceEEEeeecccCCceEEEEECCCCCEE
Confidence 99999994 433 5555788899998865 467888888899999999873 344444 3888888888762 2455
Q ss_pred EEE-cCCCCeeeccccCCC
Q 003171 512 FTL-ANHGGIRGWNVTSPG 529 (842)
Q Consensus 512 ~S~-S~DgtIrvWd~~~~~ 529 (842)
+.+ ..|+.+++|++....
T Consensus 344 ~~~~~~d~~~~~~~~~~~~ 362 (466)
T COG2319 344 VSGGSDDGTIRLWDLRTGK 362 (466)
T ss_pred EEeecCCCcEEeeecCCCc
Confidence 555 788999999976543
|
|
| >KOG4328 consensus WD40 protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.39 E-value=2.9e-11 Score=130.75 Aligned_cols=272 Identities=15% Similarity=0.140 Sum_probs=165.0
Q ss_pred CCCeEEEEEcCCC--CEEEEEeCCCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCC--CEEEeeCCCcEEE
Q 003171 191 VSSVMCMVGDEAS--GVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYG--DLWSGSEGGGIKI 266 (842)
Q Consensus 191 ~~~V~~la~dpdg--~~LaSGs~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG--~L~SgS~DgtIrv 266 (842)
...|+|++|.|.- ++|++|..-|.|-+||+.+.. ........+..|.++|.+|.|+|.. ++++.|.|||||+
T Consensus 186 ~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~----~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR~ 261 (498)
T KOG4328|consen 186 DRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQE----KDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGTIRL 261 (498)
T ss_pred ccceEEEEecccCcceEEEEccCCCcEEEEecCCCC----CccCceEEeccCCccccceEecCCChhheeeeccCceeee
Confidence 6789999999954 699999999999999996421 1223456688999999999999976 4899999999999
Q ss_pred EeCCCccceeecCCCceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcCCCCEEEEeC-CCcEEEEEccCCcE-
Q 003171 267 WPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTREL- 344 (842)
Q Consensus 267 Wd~~t~~~~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s-~~tI~lWD~~tg~~- 344 (842)
=|+++......+...... .. ...+-+......|..+. .+.+.+||++++.-
T Consensus 262 ~D~~~~i~e~v~s~~~d~-------------------~~--------fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~ 314 (498)
T KOG4328|consen 262 QDFEGNISEEVLSLDTDN-------------------IW--------FSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSE 314 (498)
T ss_pred eeecchhhHHHhhcCccc-------------------ee--------eeeccccCCCccEEEeecccceEEEEeecCCcc
Confidence 999763221111110000 00 00111222333333333 46788999988643
Q ss_pred EEEeecCCceEeeeecccCCCcccccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEee------cCc----
Q 003171 345 LKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAA------KGG---- 414 (842)
Q Consensus 345 l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~------~g~---- 414 (842)
...+..|..-++.+++.+.... ..+++..+...++|. +..
T Consensus 315 ~~~~~lh~kKI~sv~~NP~~p~------------------------------~laT~s~D~T~kIWD~R~l~~K~sp~ls 364 (498)
T KOG4328|consen 315 YENLRLHKKKITSVALNPVCPW------------------------------FLATASLDQTAKIWDLRQLRGKASPFLS 364 (498)
T ss_pred chhhhhhhcccceeecCCCCch------------------------------heeecccCcceeeeehhhhcCCCCccee
Confidence 2222333333334444443221 112233333333332 111
Q ss_pred cccCCCceEEEEECCCC-cEEEEeCCCeEEEEcCC----C-CeeeeeecCCc----cEEEE----EecCCEEEEEecCcE
Q 003171 415 FGDDNRRTEALTTSIDG-MIWTGGANGLLLQWDPN----G-NRLQDFQYLPF----AVQCL----CTFGSQIWVGYMNGI 480 (842)
Q Consensus 415 ~~~~~~~v~al~~s~dg-~l~Sgs~DgtIrlWD~~----g-~~l~~l~~H~~----~V~sl----s~dG~~LasGs~Dgt 480 (842)
...|...|.+..|||.| .|++.+.|..|||||.. . +.+.++ .|.+ +++-+ .++-.+|++|-.-..
T Consensus 365 t~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~~~p~~~I-~Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~ 443 (498)
T KOG4328|consen 365 TLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAKDEPLGTI-PHNNRTGRWLTPFKAAWDPDYNLIVVGRYPRP 443 (498)
T ss_pred cccccceeeeeEEcCCCCceEeeccCCceEEeecccccccCCcccee-eccCcccccccchhheeCCCccEEEEeccCcc
Confidence 23577889999999965 59999999999999983 2 223333 3443 33322 246679999999889
Q ss_pred EEEEeCCC-ccccccccccc-CEEEEE-eC--CCEEEEEc-CCCCeeecc
Q 003171 481 VQVLDLEG-NLLGGWVAHSS-PVIKMA-VG--AGYIFTLA-NHGGIRGWN 524 (842)
Q Consensus 481 IrlWD~~g-~~i~~l~gH~~-~V~sla-~d--g~~l~S~S-~DgtIrvWd 524 (842)
|-|+|.+| +.+..+..... .|.++- ++ +..+++|| ..|.|.||.
T Consensus 444 IDv~~~~~~q~v~el~~P~~~tI~~vn~~HP~~~~~~aG~~s~Gki~vft 493 (498)
T KOG4328|consen 444 IDVFDGNGGQMVCELHDPESSTIPSVNEFHPMRDTLAAGGNSSGKIYVFT 493 (498)
T ss_pred eeEEcCCCCEEeeeccCccccccccceeecccccceeccCCccceEEEEe
Confidence 99999985 44665554443 566653 33 33355555 344555553
|
|
| >KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.39 E-value=3.8e-11 Score=124.85 Aligned_cols=221 Identities=16% Similarity=0.176 Sum_probs=143.6
Q ss_pred cCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEecc--cCC---cEEEEEEecCCCEEEeeCCCcEEEEeCCC-cc
Q 003171 200 DEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQA--HRG---PVLSLCISSYGDLWSGSEGGGIKIWPWEA-IE 273 (842)
Q Consensus 200 dpdg~~LaSGs~DGtIrlWdl~~g~~~~~~~~~~~~~l~g--H~~---~V~slafs~dG~L~SgS~DgtIrvWd~~t-~~ 273 (842)
.|+..+.++.+.|.-|++||.-+| +...++.+ |.. +-.||+|+|||.-+-++...+||++|+.. +.
T Consensus 120 qP~t~l~a~ssr~~PIh~wdaftG--------~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaGykrcirvFdt~RpGr 191 (406)
T KOG2919|consen 120 QPSTNLFAVSSRDQPIHLWDAFTG--------KLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAGYKRCIRVFDTSRPGR 191 (406)
T ss_pred CCccceeeeccccCceeeeecccc--------ccccchhhhhhHHhhhhheeEEecCCCCeEeecccceEEEeeccCCCC
Confidence 477889999999999999999998 44444443 433 34689999999855566788999999843 22
Q ss_pred ceeecCCCceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcCCCC-EEEEeCC-CcEEEEEccCCcEEEEeecC
Q 003171 274 KALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRA-KVWSAGF-LSFALWDARTRELLKVFNID 351 (842)
Q Consensus 274 ~~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~-~v~s~s~-~tI~lWD~~tg~~l~~l~~~ 351 (842)
..- ...++ .++. ....+-+.++++++-.. .++.+++ +++-|+.-..+.++.++
T Consensus 192 ~c~-------vy~t~--------~~~k-------~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~ll--- 246 (406)
T KOG2919|consen 192 DCP-------VYTTV--------TKGK-------FGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLL--- 246 (406)
T ss_pred CCc-------chhhh--------hccc-------ccccceeeeeeccCCCCcceeeecccceeeeEecCCCCceeee---
Confidence 110 00000 0000 00022245666666443 3444443 22223322222222221
Q ss_pred CceEeeeecccCCCcccccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEeecCccccCCCceEEEEECCCC
Q 003171 352 GQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDG 431 (842)
Q Consensus 352 ~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~al~~s~dg 431 (842)
-+|.+.|+.|.+-+||
T Consensus 247 ----------------------------------------------------------------ggh~gGvThL~~~edG 262 (406)
T KOG2919|consen 247 ----------------------------------------------------------------GGHGGGVTHLQWCEDG 262 (406)
T ss_pred ----------------------------------------------------------------cccCCCeeeEEeccCc
Confidence 1344556677788888
Q ss_pred c-EEEEeC-CCeEEEEcCC--CCeeeeeecCCc----cEE-EEEecCCEEEEEecCcEEEEEeCC--CcccccccccccC
Q 003171 432 M-IWTGGA-NGLLLQWDPN--GNRLQDFQYLPF----AVQ-CLCTFGSQIWVGYMNGIVQVLDLE--GNLLGGWVAHSSP 500 (842)
Q Consensus 432 ~-l~Sgs~-DgtIrlWD~~--g~~l~~l~~H~~----~V~-sls~dG~~LasGs~DgtIrlWD~~--g~~i~~l~gH~~~ 500 (842)
. |.+|+. |-.|-.||+. +..+-.+..|.. +|. .+.+.|+.|++|+.||.|++||++ |+...++..|++.
T Consensus 263 n~lfsGaRk~dkIl~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~~~~sd~ 342 (406)
T KOG2919|consen 263 NKLFSGARKDDKILCWDIRYSRDPVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNEVSVTGNYSDT 342 (406)
T ss_pred CeecccccCCCeEEEEeehhccchhhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCCCccccccccccc
Confidence 7 888884 5679999993 567777777765 333 356679999999999999999997 6888999999999
Q ss_pred EEEEEeCCC--EEEEEcCC
Q 003171 501 VIKMAVGAG--YIFTLANH 517 (842)
Q Consensus 501 V~sla~dg~--~l~S~S~D 517 (842)
|+.++..+- .++++|..
T Consensus 343 vNgvslnP~mpilatssGq 361 (406)
T KOG2919|consen 343 VNGVSLNPIMPILATSSGQ 361 (406)
T ss_pred ccceecCcccceeeeccCc
Confidence 999997665 45555544
|
|
| >KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.37 E-value=1.4e-11 Score=133.72 Aligned_cols=241 Identities=15% Similarity=0.197 Sum_probs=162.4
Q ss_pred ecCCCEEEEeCCCCccccccccccccCCCCCCCCCCeeeeeecCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCC
Q 003171 148 GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDS 227 (842)
Q Consensus 148 ~~D~~vrvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~V~~la~dpdg~~LaSGs~DGtIrlWdl~~g~~~~ 227 (842)
+.|.-+++|.-... .+..|..+.+. ...-.|+++.....++.+|+..++|+|||+...
T Consensus 54 ~gdk~~~~~~K~g~-----------------~~~Vp~~~k~~-gd~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~k---- 111 (673)
T KOG4378|consen 54 AGDKVMRIKEKDGK-----------------TPEVPRVRKLT-GDNAFCVACASQSLYEISGGQSGCVKIWDLRAK---- 111 (673)
T ss_pred CCceeEEEecccCC-----------------CCccceeeccc-cchHHHHhhhhcceeeeccCcCceeeehhhHHH----
Confidence 56889999974321 11223333333 335667776666799999999999999999863
Q ss_pred CCCcceeEEecccCCcEEEEEEecCCC-EEEeeCCCcEEEEeCCCccceeecCCCceeeeEEEEeeceeecccceeccce
Q 003171 228 DDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGF 306 (842)
Q Consensus 228 ~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~~t~~~~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~ 306 (842)
...+.+++|+..|++|.+.-... |+++|..|-|-|-.+.++.+.-.+.....+
T Consensus 112 ----l~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~sgq---------------------- 165 (673)
T KOG4378|consen 112 ----LIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFTIDSGQ---------------------- 165 (673)
T ss_pred ----HHhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCccccceecCCCC----------------------
Confidence 33456899999999999987654 999999999999999876544333211111
Q ss_pred eeeecCCEEEEEEcCCCC-EEEEeCC-CcEEEEEccCCcEEEEeecCCceEeeeecccCCCcccccceEEEEEecCCCCc
Q 003171 307 SSILTSDIKNLLSDHSRA-KVWSAGF-LSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDK 384 (842)
Q Consensus 307 ~~~~s~~v~~las~~~~~-~v~s~s~-~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~ 384 (842)
.++.|-+++... .+.+++| ++|.|||+.....+..+.
T Consensus 166 ------svRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~----------------------------------- 204 (673)
T KOG4378|consen 166 ------SVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHAS----------------------------------- 204 (673)
T ss_pred ------eEEEeecccccceeeEeeccCCeEEEEeccCCCcccchh-----------------------------------
Confidence 133444544433 3445555 578999986543321110
Q ss_pred cceeeeEeecCcceEEecCCcEEEEeecCccccCCCceEEEEECCCCc--EEEEeCCCeEEEEcCC-CCeeeeeecCCcc
Q 003171 385 AQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGM--IWTGGANGLLLQWDPN-GNRLQDFQYLPFA 461 (842)
Q Consensus 385 ~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~al~~s~dg~--l~Sgs~DgtIrlWD~~-g~~l~~l~~H~~~ 461 (842)
..|......+.|+|-.. +++.+.|+.|.+||.. .+....+.. ..+
T Consensus 205 -------------------------------~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~y-~~P 252 (673)
T KOG4378|consen 205 -------------------------------EAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRLTY-SHP 252 (673)
T ss_pred -------------------------------hhccCCcCcceecCCccceEEEecccceEEEeecccccccceeee-cCC
Confidence 01112222355666543 6899999999999994 444444443 344
Q ss_pred EEEEE--ecCCEEEEEecCcEEEEEeCCC--cccccccccccCEEEEEeCCC
Q 003171 462 VQCLC--TFGSQIWVGYMNGIVQVLDLEG--NLLGGWVAHSSPVIKMAVGAG 509 (842)
Q Consensus 462 V~sls--~dG~~LasGs~DgtIrlWD~~g--~~i~~l~gH~~~V~sla~dg~ 509 (842)
..+++ .+|.+|++|+..|.|.-||+.+ .++.++.+|...|++|++...
T Consensus 253 lstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~Pv~v~sah~~sVt~vafq~s 304 (673)
T KOG4378|consen 253 LSTVAFSECGTYLCAGNSKGELIAYDMRSTKAPVAVRSAHDASVTRVAFQPS 304 (673)
T ss_pred cceeeecCCceEEEeecCCceEEEEecccCCCCceEeeecccceeEEEeeec
Confidence 55554 5799999999999999999985 379999999999999997543
|
|
| >KOG2055 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.37 E-value=3.1e-11 Score=130.62 Aligned_cols=239 Identities=17% Similarity=0.247 Sum_probs=167.3
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCCC--EEEeeCCCcEEEEe
Q 003171 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD--LWSGSEGGGIKIWP 268 (842)
Q Consensus 191 ~~~V~~la~dpdg~~LaSGs~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~--L~SgS~DgtIrvWd 268 (842)
.++|.||.|.|...+|.+|+.||++|++-+++.. +. .++++.=-.-||.+.+|.|+|+ +++++.-..+..||
T Consensus 213 ~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~----N~--~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyD 286 (514)
T KOG2055|consen 213 HGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKV----NP--KLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYD 286 (514)
T ss_pred cCCceEEEecCCCceEEEecCCCcEEEEEecCcc----Ch--hheeeeeccCccceeeecCCCceEEEecccceEEEEee
Confidence 5689999999999999999999999999998742 22 2233222367999999999997 78999999999999
Q ss_pred CCCccceeecCCCceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcCCCCEEEEeC-CCcEEEEEccCCcEEEE
Q 003171 269 WEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKV 347 (842)
Q Consensus 269 ~~t~~~~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s-~~tI~lWD~~tg~~l~~ 347 (842)
+.+.+.. .+.+. .++ ....+.....++++..|+..+ .+-|.|.-+.|++++.+
T Consensus 287 le~ak~~-k~~~~----------------~g~---------e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s 340 (514)
T KOG2055|consen 287 LETAKVT-KLKPP----------------YGV---------EEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITS 340 (514)
T ss_pred ccccccc-cccCC----------------CCc---------ccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhhe
Confidence 9774321 11110 011 011233445556666666555 35677777777777666
Q ss_pred eecCCceEeeeecccCCCcccccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEeecCccccCCCceEEEEE
Q 003171 348 FNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTT 427 (842)
Q Consensus 348 l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~al~~ 427 (842)
+...+ .|..+.|
T Consensus 341 ~KieG--------------------------------------------------------------------~v~~~~f 352 (514)
T KOG2055|consen 341 FKIEG--------------------------------------------------------------------VVSDFTF 352 (514)
T ss_pred eeecc--------------------------------------------------------------------EEeeEEE
Confidence 54322 2334567
Q ss_pred CCCCc-EEEEeCCCeEEEEcC-CCCeeeeeecCCccE----EEEEecCCEEEEEecCcEEEEEeCC-----C--cccccc
Q 003171 428 SIDGM-IWTGGANGLLLQWDP-NGNRLQDFQYLPFAV----QCLCTFGSQIWVGYMNGIVQVLDLE-----G--NLLGGW 494 (842)
Q Consensus 428 s~dg~-l~Sgs~DgtIrlWD~-~g~~l~~l~~H~~~V----~sls~dG~~LasGs~DgtIrlWD~~-----g--~~i~~l 494 (842)
+.||+ ||+.+.+|.|.+||+ ...|++++.. .+.| .|++.+|+++|+||..|.|.|||.+ + +++.++
T Consensus 353 sSdsk~l~~~~~~GeV~v~nl~~~~~~~rf~D-~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~ 431 (514)
T KOG2055|consen 353 SSDSKELLASGGTGEVYVWNLRQNSCLHRFVD-DGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTV 431 (514)
T ss_pred ecCCcEEEEEcCCceEEEEecCCcceEEEEee-cCccceeeeeecCCCceEEeccCcceEEEeccchhhccCCCCchhhh
Confidence 77777 788888999999999 5689988874 2223 2556789999999999999999953 2 467777
Q ss_pred cccccCEEEEEe--CCCEEEE--EcCCCCeeeccccCCCC
Q 003171 495 VAHSSPVIKMAV--GAGYIFT--LANHGGIRGWNVTSPGP 530 (842)
Q Consensus 495 ~gH~~~V~sla~--dg~~l~S--~S~DgtIrvWd~~~~~~ 530 (842)
.--+..|++|.+ |.+.|+- -..+..+|+=.+.+...
T Consensus 432 dNLtt~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~TV 471 (514)
T KOG2055|consen 432 DNLTTAITSLQFNHDAQILAIASRVKKNALRLVHVPSCTV 471 (514)
T ss_pred hhhheeeeeeeeCcchhhhhhhhhccccceEEEeccceee
Confidence 666778888885 6676664 44677888876655433
|
|
| >KOG0302 consensus Ribosome Assembly protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.36 E-value=1.8e-11 Score=129.48 Aligned_cols=238 Identities=19% Similarity=0.289 Sum_probs=153.0
Q ss_pred CCCeEEEEEcCCC--CEEEEEeCCCcEEEEECCCCcc--------CCCCCcceeEEecccCCcEEEEEEec--CCCEEEe
Q 003171 191 VSSVMCMVGDEAS--GVVWSGHRDGRIMCWKMNARLL--------DSDDGFGEVLSWQAHRGPVLSLCISS--YGDLWSG 258 (842)
Q Consensus 191 ~~~V~~la~dpdg--~~LaSGs~DGtIrlWdl~~g~~--------~~~~~~~~~~~l~gH~~~V~slafs~--dG~L~Sg 258 (842)
.+.+..+..++-+ -+.+|=|..|.|.||++....- -....++++.++.+|.+.=++|.||| .|.|+||
T Consensus 151 ~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~LlsG 230 (440)
T KOG0302|consen 151 YGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGRLLSG 230 (440)
T ss_pred ccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeecccccccccccC
Confidence 3445555555543 5666777889999999864310 01245677889999999999999999 5779999
Q ss_pred eCCCcEEEEeCCCccceeecCCCceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcC-CCCEEEEeC-CCcEEE
Q 003171 259 SEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDH-SRAKVWSAG-FLSFAL 336 (842)
Q Consensus 259 S~DgtIrvWd~~t~~~~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~-~~~~v~s~s-~~tI~l 336 (842)
---+.|++|...++. ...... . +.+| +..|.-|.-++ ....++|++ |++|+|
T Consensus 231 Dc~~~I~lw~~~~g~--W~vd~~--P------------f~gH----------~~SVEDLqWSptE~~vfaScS~DgsIrI 284 (440)
T KOG0302|consen 231 DCVKGIHLWEPSTGS--WKVDQR--P------------FTGH----------TKSVEDLQWSPTEDGVFASCSCDGSIRI 284 (440)
T ss_pred ccccceEeeeeccCc--eeecCc--c------------cccc----------ccchhhhccCCccCceEEeeecCceEEE
Confidence 888999999986632 111100 0 0011 11222333333 234556666 789999
Q ss_pred EEccCCcE---EEEeecCCceEeeeecccCCCcccccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEeecC
Q 003171 337 WDARTREL---LKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKG 413 (842)
Q Consensus 337 WD~~tg~~---l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g 413 (842)
||++.+.. +.+ .
T Consensus 285 WDiRs~~~~~~~~~-k---------------------------------------------------------------- 299 (440)
T KOG0302|consen 285 WDIRSGPKKAAVST-K---------------------------------------------------------------- 299 (440)
T ss_pred EEecCCCccceeEe-e----------------------------------------------------------------
Confidence 99987632 111 1
Q ss_pred ccccCCCceEEEEECCCC-cEEEEeCCCeEEEEcCC----CCeeeeeecCCccEEEEEec---CCEEEEEecCcEEEEEe
Q 003171 414 GFGDDNRRTEALTTSIDG-MIWTGGANGLLLQWDPN----GNRLQDFQYLPFAVQCLCTF---GSQIWVGYMNGIVQVLD 485 (842)
Q Consensus 414 ~~~~~~~~v~al~~s~dg-~l~Sgs~DgtIrlWD~~----g~~l~~l~~H~~~V~sls~d---G~~LasGs~DgtIrlWD 485 (842)
.|..-|..+.++.+- .|++|+.||+++|||+. ++.+.+|+.|..+|+||... ...|++++.|..|.|||
T Consensus 300 ---Ah~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWD 376 (440)
T KOG0302|consen 300 ---AHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWD 376 (440)
T ss_pred ---ccCCceeeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEeccCCCcEEEEE
Confidence 112223334443332 48999999999999993 57889999999999999753 56888999999999999
Q ss_pred CCC--c-------cc--------cccccccc--CEEEEEeC---CCEEEEEcCCCCeeec
Q 003171 486 LEG--N-------LL--------GGWVAHSS--PVIKMAVG---AGYIFTLANHGGIRGW 523 (842)
Q Consensus 486 ~~g--~-------~i--------~~l~gH~~--~V~sla~d---g~~l~S~S~DgtIrvW 523 (842)
+.- . -. +-+--|.+ .|..|.++ +.+++|.+.|| +.||
T Consensus 377 lsvE~D~ee~~~~a~~~L~dlPpQLLFVHqGQke~KevhWH~QiPG~lvsTa~dG-fnVf 435 (440)
T KOG0302|consen 377 LSVEADEEEIDQEAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQIPGLLVSTAIDG-FNVF 435 (440)
T ss_pred eeccCChhhhccccccchhcCCceeEEEecchhHhhhheeccCCCCeEEEecccc-eeEE
Confidence 631 0 01 12223432 35555553 56788888887 3444
|
|
| >PRK11028 6-phosphogluconolactonase; Provisional | Back alignment and domain information |
|---|
Probab=99.34 E-value=6.6e-10 Score=123.09 Aligned_cols=266 Identities=13% Similarity=0.188 Sum_probs=151.6
Q ss_pred ecCCCEEEEeCCCCccccccccccccCCCCCCCCCCeeeeeecCCCeEEEEEcCCCCEEEEEe-CCCcEEEEECCC-Ccc
Q 003171 148 GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGH-RDGRIMCWKMNA-RLL 225 (842)
Q Consensus 148 ~~D~~vrvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~V~~la~dpdg~~LaSGs-~DGtIrlWdl~~-g~~ 225 (842)
+.+++|++||+.+...... ...+...+....++++|++++|+.++ .++.|.+|+++. +.
T Consensus 9 ~~~~~I~~~~~~~~g~l~~------------------~~~~~~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~- 69 (330)
T PRK11028 9 PESQQIHVWNLNHEGALTL------------------LQVVDVPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGA- 69 (330)
T ss_pred CCCCCEEEEEECCCCceee------------------eeEEecCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCc-
Confidence 4589999999953211110 01111123566789999999987765 578899999863 21
Q ss_pred CCCCCcceeEEecccCCcEEEEEEecCCC-EEEee-CCCcEEEEeCCCccceeecCCCceeeeEEEEeeceeecccceec
Q 003171 226 DSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGS-EGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSV 303 (842)
Q Consensus 226 ~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS-~DgtIrvWd~~t~~~~l~~~~~~~~~~~l~~~~s~~~l~~~~~~ 303 (842)
+...... .+.+....|+|+|+|+ |++++ .++.|.+|++++....... ... +.+
T Consensus 70 -----l~~~~~~-~~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~------~~~---------~~~---- 124 (330)
T PRK11028 70 -----LTFAAES-PLPGSPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAP------IQI---------IEG---- 124 (330)
T ss_pred -----eEEeeee-cCCCCceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCc------eee---------ccC----
Confidence 1111111 1233567899999998 66555 4899999998632111000 000 000
Q ss_pred cceeeeecCCEEEEEEcCCCCEEEEeC--CCcEEEEEccCCcEEEEeecCCceEeeeecccCCCcccccceEEEEEecCC
Q 003171 304 NGFSSILTSDIKNLLSDHSRAKVWSAG--FLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSK 381 (842)
Q Consensus 304 ~~~~~~~s~~v~~las~~~~~~v~s~s--~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~ 381 (842)
......++.++++..++.+. ++.|.+||+.+...+.. ..... ...
T Consensus 125 -------~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~---~~~~~---------------------~~~-- 171 (330)
T PRK11028 125 -------LEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVA---QEPAE---------------------VTT-- 171 (330)
T ss_pred -------CCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccc---cCCCc---------------------eec--
Confidence 01123345566777766554 36899999876322110 00000 000
Q ss_pred CCccceeeeEeecCcceEEecCCcEEEEeecCccccCCCceEEEEECCCCc-EEEEeC-CCeEEEEcCC---C--Ceeee
Q 003171 382 KDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGM-IWTGGA-NGLLLQWDPN---G--NRLQD 454 (842)
Q Consensus 382 ~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~al~~s~dg~-l~Sgs~-DgtIrlWD~~---g--~~l~~ 454 (842)
........++++|||+ ++++.. +++|.+||++ + +.+++
T Consensus 172 -----------------------------------~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~ 216 (330)
T PRK11028 172 -----------------------------------VEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQT 216 (330)
T ss_pred -----------------------------------CCCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEE
Confidence 0001123577889988 566665 8899999984 2 23444
Q ss_pred eecCC------ccEE--EEEecCCEEEEEec-CcEEEEEeCC--Cccccccccccc---CEE--EEEeCCCEEEEEc-CC
Q 003171 455 FQYLP------FAVQ--CLCTFGSQIWVGYM-NGIVQVLDLE--GNLLGGWVAHSS---PVI--KMAVGAGYIFTLA-NH 517 (842)
Q Consensus 455 l~~H~------~~V~--sls~dG~~LasGs~-DgtIrlWD~~--g~~i~~l~gH~~---~V~--sla~dg~~l~S~S-~D 517 (842)
+..+. .... .+.++|++|+++.. +++|.+|+++ +. ..++.+|.. ... .+.+||++|+.+. .+
T Consensus 217 ~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~-~~~~~~~~~~~~~p~~~~~~~dg~~l~va~~~~ 295 (330)
T PRK11028 217 LDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGS-VLSFEGHQPTETQPRGFNIDHSGKYLIAAGQKS 295 (330)
T ss_pred EecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCC-eEEEeEEEeccccCCceEECCCCCEEEEEEccC
Confidence 43221 1222 34579999999864 7899999974 22 112223321 122 3447899988666 48
Q ss_pred CCeeecccc
Q 003171 518 GGIRGWNVT 526 (842)
Q Consensus 518 gtIrvWd~~ 526 (842)
++|.+|++.
T Consensus 296 ~~v~v~~~~ 304 (330)
T PRK11028 296 HHISVYEID 304 (330)
T ss_pred CcEEEEEEc
Confidence 999999875
|
|
| >KOG2055 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.34 E-value=2e-10 Score=124.45 Aligned_cols=271 Identities=14% Similarity=0.217 Sum_probs=185.5
Q ss_pred eeEEEEecCC-EE--EEecCCCEEEEeCCCCccccccccccccCCCCCCCCCCeeee--eecCCCeEEEEEcCCCC-EEE
Q 003171 134 FLRTIVCTEE-QL--WAGGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKES--VKGVSSVMCMVGDEASG-VVW 207 (842)
Q Consensus 134 ~~~~l~~~~~-~l--~~~~D~~vrvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~g~~~V~~la~dpdg~-~La 207 (842)
.|+++.++.. +| .+|.|+++|+|-++--. .|+..+ +. ..||.|+.|.|+|. .|+
T Consensus 215 ~I~sv~FHp~~plllvaG~d~~lrifqvDGk~-------------------N~~lqS~~l~-~fPi~~a~f~p~G~~~i~ 274 (514)
T KOG2055|consen 215 GITSVQFHPTAPLLLVAGLDGTLRIFQVDGKV-------------------NPKLQSIHLE-KFPIQKAEFAPNGHSVIF 274 (514)
T ss_pred CceEEEecCCCceEEEecCCCcEEEEEecCcc-------------------Chhheeeeec-cCccceeeecCCCceEEE
Confidence 4667777744 33 34889999999885311 112222 33 77999999999998 999
Q ss_pred EEeCCCcEEEEECCCCccCCCCCcceeEEecccC-CcEEEEEEecCCC-EEEeeCCCcEEEEeCCCccceeecCCCceee
Q 003171 208 SGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHR-GPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEKALSLKPEERHT 285 (842)
Q Consensus 208 SGs~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~-~~V~slafs~dG~-L~SgS~DgtIrvWd~~t~~~~l~~~~~~~~~ 285 (842)
+++.-.....||+.++. +..+..+.||. ..+.....|+++. |+..+..|.|.|--..|++...++..
T Consensus 275 ~s~rrky~ysyDle~ak------~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~Ki----- 343 (514)
T KOG2055|consen 275 TSGRRKYLYSYDLETAK------VTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFKI----- 343 (514)
T ss_pred ecccceEEEEeeccccc------cccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheeee-----
Confidence 99999999999999863 12333345664 5677888999998 68899999998877655432221111
Q ss_pred eEEEEeeceeecccceeccceeeeecCCEEEEEEcCCCCEEEEe-CCCcEEEEEccCCcEEEEeecCCceEeeeecccCC
Q 003171 286 AALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSA-GFLSFALWDARTRELLKVFNIDGQIENRVDMSLLP 364 (842)
Q Consensus 286 ~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~-s~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~ 364 (842)
.+.+..+++++++.+||++ +++.|.+||+.+..|+..|..++.+
T Consensus 344 -------------------------eG~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~G~v---------- 388 (514)
T KOG2055|consen 344 -------------------------EGVVSDFTFSSDSKELLASGGTGEVYVWNLRQNSCLHRFVDDGSV---------- 388 (514)
T ss_pred -------------------------ccEEeeEEEecCCcEEEEEcCCceEEEEecCCcceEEEEeecCcc----------
Confidence 2234445555566666654 5788999999998887776533321
Q ss_pred CcccccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEeecCccccCCCceEEEEECCCCc-EEEEeCCCeEE
Q 003171 365 DFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGM-IWTGGANGLLL 443 (842)
Q Consensus 365 ~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~al~~s~dg~-l~Sgs~DgtIr 443 (842)
.-++++.|++|. +++||..|.|-
T Consensus 389 --------------------------------------------------------~gts~~~S~ng~ylA~GS~~GiVN 412 (514)
T KOG2055|consen 389 --------------------------------------------------------HGTSLCISLNGSYLATGSDSGIVN 412 (514)
T ss_pred --------------------------------------------------------ceeeeeecCCCceEEeccCcceEE
Confidence 012456677776 78999999999
Q ss_pred EEcCCC-------CeeeeeecCCccEEEEEe--cCCEEEEEec--CcEEEEEeCCC-ccccccccc---ccCEEEEEe--
Q 003171 444 QWDPNG-------NRLQDFQYLPFAVQCLCT--FGSQIWVGYM--NGIVQVLDLEG-NLLGGWVAH---SSPVIKMAV-- 506 (842)
Q Consensus 444 lWD~~g-------~~l~~l~~H~~~V~sls~--dG~~LasGs~--DgtIrlWD~~g-~~i~~l~gH---~~~V~sla~-- 506 (842)
|||.+. +.+.++..-+..|+++.+ |++.||.+|. +..+||--+.. .....|... -+-|+||++
T Consensus 413 IYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP 492 (514)
T KOG2055|consen 413 IYDGNSCFASTNPKPIKTVDNLTTAITSLQFNHDAQILAIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSP 492 (514)
T ss_pred EeccchhhccCCCCchhhhhhhheeeeeeeeCcchhhhhhhhhccccceEEEeccceeeeccCCCCCCcccceEEEEecC
Confidence 999631 445555444567887765 6788887774 77899888653 223333322 245889885
Q ss_pred CCCEEEEEcCCCCeeecccc
Q 003171 507 GAGYIFTLANHGGIRGWNVT 526 (842)
Q Consensus 507 dg~~l~S~S~DgtIrvWd~~ 526 (842)
.+.+++-|-.+|.|.+|.+.
T Consensus 493 ~sG~lAvGNe~grv~l~kL~ 512 (514)
T KOG2055|consen 493 NSGYLAVGNEAGRVHLFKLH 512 (514)
T ss_pred CCceEEeecCCCceeeEeec
Confidence 56789999999999999864
|
|
| >KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription] | Back alignment and domain information |
|---|
Probab=99.33 E-value=1.2e-11 Score=128.82 Aligned_cols=249 Identities=14% Similarity=0.206 Sum_probs=156.5
Q ss_pred CCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCC-C-EEEeeCCCcEEEEeCCCccceeecCC
Q 003171 203 SGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYG-D-LWSGSEGGGIKIWPWEAIEKALSLKP 280 (842)
Q Consensus 203 g~~LaSGs~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG-~-L~SgS~DgtIrvWd~~t~~~~l~~~~ 280 (842)
.-+||.|++-|.|||-|+..+ +....+.||.++|+.|.|.|+. + ++|||.|.+||+|++++..+...+-+
T Consensus 105 ~p~la~~G~~GvIrVid~~~~--------~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG 176 (385)
T KOG1034|consen 105 NPFLAAGGYLGVIRVIDVVSG--------QCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGG 176 (385)
T ss_pred CeeEEeecceeEEEEEecchh--------hhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecc
Confidence 357888889999999999987 6677899999999999999987 3 67999999999999987554433322
Q ss_pred CceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcCCCCEEEEeC-CCcEEEEEccCCcEEEEeecCCceEeeee
Q 003171 281 EERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVFNIDGQIENRVD 359 (842)
Q Consensus 281 ~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s-~~tI~lWD~~tg~~l~~l~~~~~~~~~~~ 359 (842)
.+. | -..|.++-++.++.+++|++ |.+|++|++.+.++-..+ +.+..
T Consensus 177 ~eg----------------H----------rdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~l------E~s~~ 224 (385)
T KOG1034|consen 177 VEG----------------H----------RDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKL------ELSIT 224 (385)
T ss_pred ccc----------------c----------cCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhh------hhhcc
Confidence 111 2 34577788888888999888 679999999876542211 11112
Q ss_pred cccCCCcccccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEeecCccccCCCceEEEEECCCCcEEEEeCC
Q 003171 360 MSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGMIWTGGAN 439 (842)
Q Consensus 360 ~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~al~~s~dg~l~Sgs~D 439 (842)
+++..... + -......| +. +. + -.-|...|.++.+= ...++|=|.+
T Consensus 225 ~~~~~t~~--------------p-fpt~~~~f-p~----fs-t------------~diHrnyVDCvrw~-gd~ilSksce 270 (385)
T KOG1034|consen 225 YSPNKTTR--------------P-FPTPKTHF-PD----FS-T------------TDIHRNYVDCVRWF-GDFILSKSCE 270 (385)
T ss_pred cCCCCccC--------------c-CCcccccc-cc----cc-c------------cccccchHHHHHHH-hhheeecccC
Confidence 22111000 0 00000000 00 00 0 00122223222221 1246777778
Q ss_pred CeEEEEcC-C-CC-------------eeeeeecCCccEEEE--Eec--CCEEEEEecCcEEEEEeCCCc-c--ccccccc
Q 003171 440 GLLLQWDP-N-GN-------------RLQDFQYLPFAVQCL--CTF--GSQIWVGYMNGIVQVLDLEGN-L--LGGWVAH 497 (842)
Q Consensus 440 gtIrlWD~-~-g~-------------~l~~l~~H~~~V~sl--s~d--G~~LasGs~DgtIrlWD~~g~-~--i~~l~gH 497 (842)
+.|..|-. + ++ .+.+|......|.-+ ++| ++.||.|...|.|.+||++.. . ..++.-+
T Consensus 271 naI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~~ep~~~ttl~~s 350 (385)
T KOG1034|consen 271 NAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLALGNQSGKVYVWDLDNNEPPKCTTLTHS 350 (385)
T ss_pred ceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhhccCCCcEEEEECCCCCCccCceEEec
Confidence 88999976 3 22 233444444555554 344 689999999999999999732 2 2233222
Q ss_pred c--cCEEE--EEeCCCEEEEEcCCCCeeeccc
Q 003171 498 S--SPVIK--MAVGAGYIFTLANHGGIRGWNV 525 (842)
Q Consensus 498 ~--~~V~s--la~dg~~l~S~S~DgtIrvWd~ 525 (842)
. ..|.. ++.|+..|+-...|++|..||.
T Consensus 351 ~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdr 382 (385)
T KOG1034|consen 351 KSGSTVRQTSFSRDGSILVLVCDDGTVWRWDR 382 (385)
T ss_pred cccceeeeeeecccCcEEEEEeCCCcEEEEEe
Confidence 1 23433 4469999999999999999984
|
|
| >KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.32 E-value=3.9e-11 Score=121.84 Aligned_cols=268 Identities=15% Similarity=0.148 Sum_probs=162.9
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEec-ccCCcEEEEEEecCCCEEEeeCCCcEEEEeC
Q 003171 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQ-AHRGPVLSLCISSYGDLWSGSEGGGIKIWPW 269 (842)
Q Consensus 191 ~~~V~~la~dpdg~~LaSGs~DGtIrlWdl~~g~~~~~~~~~~~~~l~-gH~~~V~slafs~dG~L~SgS~DgtIrvWd~ 269 (842)
.+.|+|+.|..++ +|.+|..-|.+++|++.+. +....|+ .|+..|+.+--.|++.|.|=+.|.++.+|++
T Consensus 14 ~~~v~s~~fqa~~-rL~sg~~~G~V~~w~lqt~--------r~~~~~r~~g~~~it~lq~~p~d~l~tqgRd~~L~lw~i 84 (323)
T KOG0322|consen 14 SSSVTSVLFQANE-RLMSGLSVGIVKMWVLQTE--------RDLPLIRLFGRLFITNLQSIPNDSLDTQGRDPLLILWTI 84 (323)
T ss_pred cchheehhhccch-hhhcccccceEEEEEeecC--------ccchhhhhhccceeeceeecCCcchhhcCCCceEEEEEc
Confidence 6789999998655 5899999999999999985 5566777 5688999999999988999999999999998
Q ss_pred CCcc--------------ceeecCCCceeeeEEEE-eeceeecccceeccc-eeee--e-------cCCEEEEEE--cCC
Q 003171 270 EAIE--------------KALSLKPEERHTAALIV-ERSYIDLRSHLSVNG-FSSI--L-------TSDIKNLLS--DHS 322 (842)
Q Consensus 270 ~t~~--------------~~l~~~~~~~~~~~l~~-~~s~~~l~~~~~~~~-~~~~--~-------s~~v~~las--~~~ 322 (842)
.... +.+++.+.......+.. ..-..+. .|....+ .+.+ + .+.+.+.-- ...
T Consensus 85 a~s~~i~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde-~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~~~c~ 163 (323)
T KOG0322|consen 85 AYSAFISIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDE-THKQDGGDTTQVQIADDSERSKLGSVMCQDKDHACG 163 (323)
T ss_pred cCcceEEEeeeeccccccccceeccCCCcchhheecCCcccch-hhhhccCccceeEccCchhccccCceeeeecccccc
Confidence 6411 11111111111100000 0000000 0100000 0000 0 111222221 111
Q ss_pred CCEEEEeC--CCcEEEEEccCCcEEEEeecCCceEeeeecccCCCcccccceEEEEEecCCCCccceeeeEeecCcceEE
Q 003171 323 RAKVWSAG--FLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIM 400 (842)
Q Consensus 323 ~~~v~s~s--~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~ 400 (842)
...+..++ ++.+.+||+.++..+..|.....++ .
T Consensus 164 s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~----------------------~---------------------- 199 (323)
T KOG0322|consen 164 STFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVE----------------------S---------------------- 199 (323)
T ss_pred ceEEEEEeccCCeEEEEEccCCceeeccccccccc----------------------c----------------------
Confidence 22333344 3567788887775433332111000 0
Q ss_pred ecCCcEEEEeecCccccCCCceEEEEECCC-CcEEEEeCCCeEEEEcCC---CCee--eeeecCCccEE--EEEecCCEE
Q 003171 401 GAADAVRRVAAKGGFGDDNRRTEALTTSID-GMIWTGGANGLLLQWDPN---GNRL--QDFQYLPFAVQ--CLCTFGSQI 472 (842)
Q Consensus 401 g~~~~v~~v~~~g~~~~~~~~v~al~~s~d-g~l~Sgs~DgtIrlWD~~---g~~l--~~l~~H~~~V~--sls~dG~~L 472 (842)
....|...|.++.+.+- .+=++|+.+..+..|.++ |.+. .+++.-.-.|. .|.+|++.+
T Consensus 200 -------------~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~gslq~~~e~~lknpGv~gvrIRpD~KIl 266 (323)
T KOG0322|consen 200 -------------PNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTGSLQIRKEITLKNPGVSGVRIRPDGKIL 266 (323)
T ss_pred -------------chhhccCcceeeeechhhcCCcCCCccccceeeeeccccCcccccceEEecCCCccceEEccCCcEE
Confidence 01133444555554432 123567777778889873 4321 22222222344 457899999
Q ss_pred EEEecCcEEEEEeCC-CcccccccccccCEEEEEe--CCCEEEEEcCCCCeeeccc
Q 003171 473 WVGYMNGIVQVLDLE-GNLLGGWVAHSSPVIKMAV--GAGYIFTLANHGGIRGWNV 525 (842)
Q Consensus 473 asGs~DgtIrlWD~~-g~~i~~l~gH~~~V~sla~--dg~~l~S~S~DgtIrvWd~ 525 (842)
|+++.|+.||||.-+ .+.+..++-|.+.|+++++ |...++.+|.|++|.+|++
T Consensus 267 ATAGWD~RiRVyswrtl~pLAVLkyHsagvn~vAfspd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 267 ATAGWDHRIRVYSWRTLNPLAVLKYHSAGVNAVAFSPDCELMAAASKDARISLWKL 322 (323)
T ss_pred eecccCCcEEEEEeccCCchhhhhhhhcceeEEEeCCCCchhhhccCCceEEeeec
Confidence 999999999999965 7899999999999999996 4568999999999999985
|
|
| >KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.31 E-value=8.9e-11 Score=124.90 Aligned_cols=126 Identities=15% Similarity=0.169 Sum_probs=97.9
Q ss_pred CCCeEEEEEcC-CCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCCC--EEEeeCCCcEEEE
Q 003171 191 VSSVMCMVGDE-ASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD--LWSGSEGGGIKIW 267 (842)
Q Consensus 191 ~~~V~~la~dp-dg~~LaSGs~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~--L~SgS~DgtIrvW 267 (842)
+++|+.++|+| +...|||||.|.+|+||.+..+. -..+..+.+..|.||+..|..|+++|... |+|++.|.+|.+|
T Consensus 81 t~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~-l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~v~iW 159 (472)
T KOG0303|consen 81 TAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENG-LTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNTVSIW 159 (472)
T ss_pred cccccccccCccCCceeecCCCCceEEEEECCCcc-cccCcccceEEEeecceeEEEEeecccchhhHhhccCCceEEEE
Confidence 88999999999 56899999999999999987642 11122355677899999999999999875 7899999999999
Q ss_pred eCCCccceeecCCCceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcCCCCEEEEe-CCCcEEEEEccCCcEEE
Q 003171 268 PWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSA-GFLSFALWDARTRELLK 346 (842)
Q Consensus 268 d~~t~~~~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~-s~~tI~lWD~~tg~~l~ 346 (842)
|+.+++..+++. + ...+..+.+..+|.++.++ .|+.|+|||.++|+++.
T Consensus 160 nv~tgeali~l~-h-----------------------------pd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~ 209 (472)
T KOG0303|consen 160 NVGTGEALITLD-H-----------------------------PDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVS 209 (472)
T ss_pred eccCCceeeecC-C-----------------------------CCeEEEEEeccCCceeeeecccceeEEEcCCCCcEee
Confidence 999887655443 1 2234455566666666554 47899999999998865
Q ss_pred E
Q 003171 347 V 347 (842)
Q Consensus 347 ~ 347 (842)
.
T Consensus 210 e 210 (472)
T KOG0303|consen 210 E 210 (472)
T ss_pred e
Confidence 4
|
|
| >KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription] | Back alignment and domain information |
|---|
Probab=99.26 E-value=6.9e-11 Score=123.29 Aligned_cols=96 Identities=21% Similarity=0.266 Sum_probs=80.4
Q ss_pred ecCCCEEEEeCCCCccccccccccccCCCCCCCCCCeeeeeecCCCeEEEEEcCCC-CEEEEEeCCCcEEEEECCCCccC
Q 003171 148 GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEAS-GVVWSGHRDGRIMCWKMNARLLD 226 (842)
Q Consensus 148 ~~D~~vrvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~V~~la~dpdg-~~LaSGs~DGtIrlWdl~~g~~~ 226 (842)
|.-|-|||-|+.+....+. ++ .| +.+|..+.+.|+. ++|.|||.|.+||+|++.+.
T Consensus 112 G~~GvIrVid~~~~~~~~~-----------------~~--gh-G~sINeik~~p~~~qlvls~SkD~svRlwnI~~~--- 168 (385)
T KOG1034|consen 112 GYLGVIRVIDVVSGQCSKN-----------------YR--GH-GGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTD--- 168 (385)
T ss_pred cceeEEEEEecchhhhccc-----------------ee--cc-CccchhhhcCCCCCcEEEEecCCceEEEEeccCC---
Confidence 5678999999976554432 22 23 6789999999965 79999999999999999997
Q ss_pred CCCCcceeEEe---cccCCcEEEEEEecCCC-EEEeeCCCcEEEEeCCC
Q 003171 227 SDDGFGEVLSW---QAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEA 271 (842)
Q Consensus 227 ~~~~~~~~~~l---~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~~t 271 (842)
.++..+ .||++.|.++.|+.+|. |+|++.|.+|++|++..
T Consensus 169 -----~Cv~VfGG~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~ 212 (385)
T KOG1034|consen 169 -----VCVAVFGGVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNV 212 (385)
T ss_pred -----eEEEEecccccccCcEEEEEEcCCCCeeeccCCcceEEEEecCh
Confidence 566655 68999999999999997 89999999999999974
|
|
| >KOG1963 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.25 E-value=3.9e-09 Score=122.67 Aligned_cols=355 Identities=16% Similarity=0.180 Sum_probs=181.6
Q ss_pred EEEEecCCCEEEEeCCCCccccccccccccCCCCCCCCCCeeeeeecCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCC
Q 003171 144 QLWAGGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGHRDGRIMCWKMNAR 223 (842)
Q Consensus 144 ~l~~~~D~~vrvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~V~~la~dpdg~~LaSGs~DGtIrlWdl~~g 223 (842)
-..+..++.+.+|+..+.....+ ++.-.++|+-++.|.+++|.++++|+|..||.|.+|.--+.
T Consensus 174 ~~~i~~~~~~~~~~v~~~~~~~~----------------~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~ 237 (792)
T KOG1963|consen 174 FKGIVHMCKIHIYFVPKHTKHTS----------------SRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGS 237 (792)
T ss_pred EEEEEEeeeEEEEEecccceeec----------------cchhhhhhcccceeEEeccccceEEEeccCCcEEEEecccc
Confidence 34456678899999865332221 11112233456899999999999999999999999974431
Q ss_pred ccCCCCCcceeEEecccCCcEEEEEEecCCC-EEEeeCCCcEEEEeCCCcccee-----------ecCCCceeeeEEEEe
Q 003171 224 LLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEKAL-----------SLKPEERHTAALIVE 291 (842)
Q Consensus 224 ~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~~t~~~~l-----------~~~~~~~~~~~l~~~ 291 (842)
. ..-.....|.=|...|++++|+++|. |+||+..+.+-+|.++++++.+ ...++........-+
T Consensus 238 ~----~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~kqfLPRLgs~I~~i~vS~ds~~~sl~~~D 313 (792)
T KOG1963|consen 238 S----DDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLETGKKQFLPRLGSPILHIVVSPDSDLYSLVLED 313 (792)
T ss_pred c----cccccceEEEecccccceeEEecCCceEeecccceEEEEEeecCCCcccccccCCeeEEEEEcCCCCeEEEEecC
Confidence 0 11122344555899999999999997 8999999999999999866432 112211111111112
Q ss_pred eceeeccc-----ceeccceeee-------ecCCEEEEEEcC-CCCEEEEeCCCcEEEEEccCCcEEEEeecC------C
Q 003171 292 RSYIDLRS-----HLSVNGFSSI-------LTSDIKNLLSDH-SRAKVWSAGFLSFALWDARTRELLKVFNID------G 352 (842)
Q Consensus 292 ~s~~~l~~-----~~~~~~~~~~-------~s~~v~~las~~-~~~~v~s~s~~tI~lWD~~tg~~l~~l~~~------~ 352 (842)
.++..+++ ..++.|..+. +..-...+..++ .+..+..+..+.|.+||+.+.+.+..+..- +
T Consensus 314 NqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~~~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~ 393 (792)
T KOG1963|consen 314 NQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPRTNSLVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDG 393 (792)
T ss_pred ceEEEEeccchhhhhhccCccCCCccccccccccceeEEEcCCCCceeecCCCceEEEEeccccceeeeEEEEeecccCC
Confidence 22222221 1222332221 111234555666 445666777789999999887766544321 1
Q ss_pred ceEeeeeccc---CCCcccccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEeecCccccCCCceEE-EEEC
Q 003171 353 QIENRVDMSL---LPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEA-LTTS 428 (842)
Q Consensus 353 ~~~~~~~~s~---~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~a-l~~s 428 (842)
.....+.... .....+-.+..+++-.-...++ ...+.||+...+.- .+.+.++- ...|.....+ +..+
T Consensus 394 ~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~-e~~LKFW~~n~~~k------t~~L~T~I-~~PH~~~~vat~~~~ 465 (792)
T KOG1963|consen 394 DVNIQVGITAVARSRFGSWMATLEARIDKFNFFDG-EVSLKFWQYNPNSK------TFILNTKI-NNPHGNAFVATIFLN 465 (792)
T ss_pred cceeEEeeeeehhhccceEEEEeeeeehhhhccCc-eEEEEEEEEcCCcc------eeEEEEEE-ecCCCceeEEEEEec
Confidence 1000000000 0001110010111000000010 12345554321100 00000000 0123222222 2233
Q ss_pred CC-C-cEEEEeCCCeEEEEcCCC-----------CeeeeeecCCccEEEEEe--cCCEEEEEecCcEEEEEeCCC-c-cc
Q 003171 429 ID-G-MIWTGGANGLLLQWDPNG-----------NRLQDFQYLPFAVQCLCT--FGSQIWVGYMNGIVQVLDLEG-N-LL 491 (842)
Q Consensus 429 ~d-g-~l~Sgs~DgtIrlWD~~g-----------~~l~~l~~H~~~V~sls~--dG~~LasGs~DgtIrlWD~~g-~-~i 491 (842)
+- . ++++++.||.+|+|-.++ .|...-..|..++++.++ ||+.|+. +.|++|.+||... + +.
T Consensus 466 ~~rs~~~vta~~dg~~KiW~~~~~~n~~k~~s~W~c~~i~sy~k~~i~a~~fs~dGslla~-s~~~~Itiwd~~~~~~l~ 544 (792)
T KOG1963|consen 466 PTRSVRCVTASVDGDFKIWVFTDDSNIYKKSSNWTCKAIGSYHKTPITALCFSQDGSLLAV-SFDDTITIWDYDTKNELL 544 (792)
T ss_pred CcccceeEEeccCCeEEEEEEecccccCcCccceEEeeeeccccCcccchhhcCCCcEEEE-ecCCEEEEecCCChhhhh
Confidence 22 2 578999999999997632 132222236777776654 7877766 5688999999764 2 21
Q ss_pred ccccccccCEEEEEe----CCCEEEEEcCCCCeeeccccC
Q 003171 492 GGWVAHSSPVIKMAV----GAGYIFTLANHGGIRGWNVTS 527 (842)
Q Consensus 492 ~~l~gH~~~V~sla~----dg~~l~S~S~DgtIrvWd~~~ 527 (842)
-+...-..++..+.+ .....+...+-..+.+|++-+
T Consensus 545 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~WNll~ 584 (792)
T KOG1963|consen 545 CTEGSRNWPIAELLFTAQTQNDGALVHATQQRLSVWNLLS 584 (792)
T ss_pred ccccccccchHhHhhhcccccccceeeccCceEehHhhhh
Confidence 122111112222221 222344555667778888643
|
|
| >KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.25 E-value=8e-10 Score=129.48 Aligned_cols=278 Identities=14% Similarity=0.135 Sum_probs=163.0
Q ss_pred CeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEeccc---CCcEEEEEEecCCC---EEEeeCCCcEEE
Q 003171 193 SVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAH---RGPVLSLCISSYGD---LWSGSEGGGIKI 266 (842)
Q Consensus 193 ~V~~la~dpdg~~LaSGs~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH---~~~V~slafs~dG~---L~SgS~DgtIrv 266 (842)
+-..+.++|=...|+++...-+|++||.+.+ +....|.-+ ...|+.|.+-.+-. |++||.||.|||
T Consensus 1066 ~pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~--------~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRI 1137 (1387)
T KOG1517|consen 1066 PPKTLKFHPFEPQIAAADDRERIRVWDWEKG--------RLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRI 1137 (1387)
T ss_pred CCceeeecCCCceeEEcCCcceEEEEecccC--------ceeccccCCCCCCCccceeeeecccchhheeeeccCceEEE
Confidence 3455677776677888776778999999886 333333322 35799999876543 689999999999
Q ss_pred EeCC-CccceeecCCCceeeeEEEEeeceeecccceeccceeeeecCCEEEEEE-cCCCCEEEEeCC-CcEEEEEccCCc
Q 003171 267 WPWE-AIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLS-DHSRAKVWSAGF-LSFALWDARTRE 343 (842)
Q Consensus 267 Wd~~-t~~~~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las-~~~~~~v~s~s~-~tI~lWD~~tg~ 343 (842)
|+-- ++.+.. .+++. +..+.++. ....+.. ++.. ....+.+.++++ +.|+|||+.+..
T Consensus 1138 wk~y~~~~~~~-------eLVTa-----w~~Ls~~~------~~~r~~~-~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~ 1198 (1387)
T KOG1517|consen 1138 WKDYADKWKKP-------ELVTA-----WSSLSDQL------PGARGTG-LVVDWQQQSGHLLVTGDVRSIRIWDAHKEQ 1198 (1387)
T ss_pred ecccccccCCc-------eeEEe-----eccccccC------ccCCCCC-eeeehhhhCCeEEecCCeeEEEEEecccce
Confidence 9742 110100 11100 00011110 0001111 2221 223345555554 789999998876
Q ss_pred EEEEeecCCceEeeeecccCCCcccccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEeec---------Cc
Q 003171 344 LLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAK---------GG 414 (842)
Q Consensus 344 ~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~---------g~ 414 (842)
++......... ... ..+.. ...+.....|-+||..|+-.+ -.
T Consensus 1199 ~~~diP~~s~t---------~vT---------aLS~~-----------~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~ 1249 (1387)
T KOG1517|consen 1199 VVADIPYGSST---------LVT---------ALSAD-----------LVHGNIIAAGFADGSVRVYDRRMAPPDSLVCV 1249 (1387)
T ss_pred eEeecccCCCc---------cce---------eeccc-----------ccCCceEEEeecCCceEEeecccCCcccccee
Confidence 65443211100 000 00110 011234456667776666541 12
Q ss_pred cccCCCc--eEEEEECCCC--cEEEEeCCCeEEEEcCCCCeee---eeecCC--c-cEEEEEe--cCCEEEEEecCcEEE
Q 003171 415 FGDDNRR--TEALTTSIDG--MIWTGGANGLLLQWDPNGNRLQ---DFQYLP--F-AVQCLCT--FGSQIWVGYMNGIVQ 482 (842)
Q Consensus 415 ~~~~~~~--v~al~~s~dg--~l~Sgs~DgtIrlWD~~g~~l~---~l~~H~--~-~V~sls~--dG~~LasGs~DgtIr 482 (842)
+..|+.. |..+.+-+.| .|+|||.||.|++||+.+.... ++..|. + .++++.. +...||+|+. +.|+
T Consensus 1250 ~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~-q~ik 1328 (1387)
T KOG1517|consen 1250 YREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAPIIASGSA-QLIK 1328 (1387)
T ss_pred ecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcccccceeeeccccCccceeeeeccCCCeeeecCc-ceEE
Confidence 3345554 6666666644 5999999999999999653222 222333 2 4777765 5679999988 9999
Q ss_pred EEeCCCcccccccccc-------cCEEEEEeCCC--EEEEEcCCCCeeeccccC
Q 003171 483 VLDLEGNLLGGWVAHS-------SPVIKMAVGAG--YIFTLANHGGIRGWNVTS 527 (842)
Q Consensus 483 lWD~~g~~i~~l~gH~-------~~V~sla~dg~--~l~S~S~DgtIrvWd~~~ 527 (842)
||++.|+.+..++-+. +.+.|+++++- .++.|+.|.+|.|+....
T Consensus 1329 Iy~~~G~~l~~~k~n~~F~~q~~gs~scL~FHP~~~llAaG~~Ds~V~iYs~~k 1382 (1387)
T KOG1517|consen 1329 IYSLSGEQLNIIKYNPGFMGQRIGSVSCLAFHPHRLLLAAGSADSTVSIYSCEK 1382 (1387)
T ss_pred EEecChhhhcccccCcccccCcCCCcceeeecchhHhhhhccCCceEEEeecCC
Confidence 9999987665555332 45688888765 467889999999987543
|
|
| >KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.24 E-value=3.5e-11 Score=127.99 Aligned_cols=172 Identities=14% Similarity=0.145 Sum_probs=119.7
Q ss_pred cccCCCceEEEEECC--CCcEEEEeCCCeEEEEcC-CC-------CeeeeeecCCccEEEEEec---CCEEEEEecCcEE
Q 003171 415 FGDDNRRTEALTTSI--DGMIWTGGANGLLLQWDP-NG-------NRLQDFQYLPFAVQCLCTF---GSQIWVGYMNGIV 481 (842)
Q Consensus 415 ~~~~~~~v~al~~s~--dg~l~Sgs~DgtIrlWD~-~g-------~~l~~l~~H~~~V~sls~d---G~~LasGs~DgtI 481 (842)
+.+|...|..+.+.| |..|+|||.|.+|++|++ ++ +.+..|.||...|--+... ...|++++.|.+|
T Consensus 77 v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~v 156 (472)
T KOG0303|consen 77 VCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNTV 156 (472)
T ss_pred ccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCceE
Confidence 456777788888877 345899999999999998 43 4567788999999988753 4589999999999
Q ss_pred EEEeCC-CcccccccccccCEEEEEe--CCCEEEEEcCCCCeeeccccCCCCCcchhhhhhcccccccccccceeEEEEE
Q 003171 482 QVLDLE-GNLLGGWVAHSSPVIKMAV--GAGYIFTLANHGGIRGWNVTSPGPLDSILCKELAGKEFLYTRMENLKILAGT 558 (842)
Q Consensus 482 rlWD~~-g~~i~~l~gH~~~V~sla~--dg~~l~S~S~DgtIrvWd~~~~~~~d~~l~~~l~~r~~~y~~~~~~~i~~~t 558 (842)
.+||+. |..+-++. |.+.|+++.+ ||++++|.+.|+.|||||.+.......-...+-.+. ..-||++.
T Consensus 157 ~iWnv~tgeali~l~-hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~--------~Raifl~~ 227 (472)
T KOG0303|consen 157 SIWNVGTGEALITLD-HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKP--------ARAIFLAS 227 (472)
T ss_pred EEEeccCCceeeecC-CCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeecccccCCCc--------ceeEEecc
Confidence 999997 66666676 9999999985 899999999999999999776544332222211111 11233332
Q ss_pred EEeC---CCCCCcccccccccCCCCCceEEEEEeecccCccchh
Q 003171 559 WNVG---QGRASQDALISWLGSAASDVGIVVVGLQEVEMGAGFL 599 (842)
Q Consensus 559 wNv~---~~~~~~~~l~~~l~~~~~~~di~viglQE~~~~~~~~ 599 (842)
-++. -.+.+..++.=|=......| ++|||++-+.|.+
T Consensus 228 g~i~tTGfsr~seRq~aLwdp~nl~eP----~~~~elDtSnGvl 267 (472)
T KOG0303|consen 228 GKIFTTGFSRMSERQIALWDPNNLEEP----IALQELDTSNGVL 267 (472)
T ss_pred CceeeeccccccccceeccCcccccCc----ceeEEeccCCceE
Confidence 2221 12333334444544444455 8999998665543
|
|
| >KOG4328 consensus WD40 protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.24 E-value=6.6e-10 Score=120.43 Aligned_cols=158 Identities=16% Similarity=0.234 Sum_probs=99.7
Q ss_pred CCEEEEec--CCCEEEEeCCCCccccccccccccCCCCCCCCCCeeeeeecCCCeEEEEEcCCC-CEEEEEeCCCcEEEE
Q 003171 142 EEQLWAGG--ENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEAS-GVVWSGHRDGRIMCW 218 (842)
Q Consensus 142 ~~~l~~~~--D~~vrvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~V~~la~dpdg-~~LaSGs~DGtIrlW 218 (842)
+..+.+.. -|.|-+||+.+-... ++. -+....| .++|.||.|+|.+ ..|++.|+||+||+=
T Consensus 199 ~~~lva~GdK~G~VG~Wn~~~~~~d--------------~d~-v~~f~~h-s~~Vs~l~F~P~n~s~i~ssSyDGtiR~~ 262 (498)
T KOG4328|consen 199 NRKLVAVGDKGGQVGLWNFGTQEKD--------------KDG-VYLFTPH-SGPVSGLKFSPANTSQIYSSSYDGTIRLQ 262 (498)
T ss_pred cceEEEEccCCCcEEEEecCCCCCc--------------cCc-eEEeccC-CccccceEecCCChhheeeeccCceeeee
Confidence 33666644 469999999521111 111 1222234 7899999999965 789999999999999
Q ss_pred ECCCCcc----------------------------CCCCCc---------ceeEEecccCCcEEEEEEecCCC--EEEee
Q 003171 219 KMNARLL----------------------------DSDDGF---------GEVLSWQAHRGPVLSLCISSYGD--LWSGS 259 (842)
Q Consensus 219 dl~~g~~----------------------------~~~~~~---------~~~~~l~gH~~~V~slafs~dG~--L~SgS 259 (842)
|+++..- +....| .+.-.|.-|...|++|++.|-.. |+|||
T Consensus 263 D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p~~laT~s 342 (498)
T KOG4328|consen 263 DFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALNPVCPWFLATAS 342 (498)
T ss_pred eecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhhcccceeecCCCCchheeecc
Confidence 9887631 000000 01112345778999999999764 89999
Q ss_pred CCCcEEEEeCCCccceeecCCCceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcCCCCEEEEe-CCCcEEEEE
Q 003171 260 EGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSA-GFLSFALWD 338 (842)
Q Consensus 260 ~DgtIrvWd~~t~~~~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~-s~~tI~lWD 338 (842)
.|+|+||||+......-+ + .+..+ .| .-.|....+++.++.|++. .|..|+|||
T Consensus 343 ~D~T~kIWD~R~l~~K~s----p-~lst~----------~H----------rrsV~sAyFSPs~gtl~TT~~D~~IRv~d 397 (498)
T KOG4328|consen 343 LDQTAKIWDLRQLRGKAS----P-FLSTL----------PH----------RRSVNSAYFSPSGGTLLTTCQDNEIRVFD 397 (498)
T ss_pred cCcceeeeehhhhcCCCC----c-ceecc----------cc----------cceeeeeEEcCCCCceEeeccCCceEEee
Confidence 999999999965211100 0 00000 01 2235566677777666654 478999999
Q ss_pred cc
Q 003171 339 AR 340 (842)
Q Consensus 339 ~~ 340 (842)
..
T Consensus 398 ss 399 (498)
T KOG4328|consen 398 SS 399 (498)
T ss_pred cc
Confidence 74
|
|
| >KOG1188 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.23 E-value=3.5e-10 Score=118.72 Aligned_cols=257 Identities=11% Similarity=0.133 Sum_probs=164.3
Q ss_pred CEEEEEeCCCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecC--CC-EEEeeCCCcEEEEeCCCccceeecCC
Q 003171 204 GVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSY--GD-LWSGSEGGGIKIWPWEAIEKALSLKP 280 (842)
Q Consensus 204 ~~LaSGs~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~d--G~-L~SgS~DgtIrvWd~~t~~~~l~~~~ 280 (842)
..+|++-..|+||++|..++ +.+..++||...++.|.|..+ +. +.|||.||+||+||+.+....-..
T Consensus 41 ~~vav~lSngsv~lyd~~tg--------~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~-- 110 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTG--------QLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARI-- 110 (376)
T ss_pred eeEEEEecCCeEEEEeccch--------hhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhhe--
Confidence 56889999999999999997 677889999999999999875 23 679999999999999763221110
Q ss_pred CceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcCCCCEEEEeCC-----CcEEEEEccCCcE-EEEee-cCCc
Q 003171 281 EERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGF-----LSFALWDARTREL-LKVFN-IDGQ 353 (842)
Q Consensus 281 ~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s~-----~tI~lWD~~tg~~-l~~l~-~~~~ 353 (842)
....+ . .....+++..-.+..+.+++- -.+.+||++..+. ++.+. .|.
T Consensus 111 ---------------~~~~~--~-------~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~- 165 (376)
T KOG1188|consen 111 ---------------SWTQQ--S-------GTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHN- 165 (376)
T ss_pred ---------------eccCC--C-------CCcceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhcc-
Confidence 11111 0 112234444334445555542 2588999987654 43332 111
Q ss_pred eEeeeecccCCCcccccceEEEEEecCCCCccceeeeEeecCc-ceEEecCCcEEEEee-cCc-----c---ccCCCceE
Q 003171 354 IENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSR-NAIMGAADAVRRVAA-KGG-----F---GDDNRRTE 423 (842)
Q Consensus 354 ~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~-~~~~g~~~~v~~v~~-~g~-----~---~~~~~~v~ 423 (842)
-.+..+.|.|..+ ..+.|+.||...+-. ++. + ..+...|.
T Consensus 166 ------------------------------DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~EeDaL~~viN~~sSI~ 215 (376)
T KOG1188|consen 166 ------------------------------DDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNEEDALLHVINHGSSIH 215 (376)
T ss_pred ------------------------------CcceeEEecCCCCCeEEeecccceEEeeecCCCcchhhHHHhhcccceee
Confidence 1122356776655 446788888766543 221 1 12345577
Q ss_pred EEEECCCC--cEEEEeCCCeEEEEcC-CCCeeeeeec-------------CCccEEEEEe-cCCEEEEEec-CcEEEEEe
Q 003171 424 ALTTSIDG--MIWTGGANGLLLQWDP-NGNRLQDFQY-------------LPFAVQCLCT-FGSQIWVGYM-NGIVQVLD 485 (842)
Q Consensus 424 al~~s~dg--~l~Sgs~DgtIrlWD~-~g~~l~~l~~-------------H~~~V~sls~-dG~~LasGs~-DgtIrlWD 485 (842)
.+.|..++ +|+.-+..++..+|++ .|.+...+.. -.+-|.+.++ ++...+.++. -+..+++-
T Consensus 216 ~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~~~~~~~~d~r~~~~~dY~I~~~~~~~~~~~~l~g~~~n~~~~~~ 295 (376)
T KOG1188|consen 216 LIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWLENPDVSADDLRKEDNCDYVINEHSPGDKDTCALAGTDSNKGTIFP 295 (376)
T ss_pred eeeeecCCcceEEEEEccCceeEEEccCCChhhcccCccchhhhHHhhhhhhheeecccCCCcceEEEeccccCceeEEE
Confidence 78898888 6888888999999999 5765443331 1223445555 3344444443 45555543
Q ss_pred ---CC-C---cccccccc-cccCEEEEEe--CCCEEEEEcCCCCeeeccc
Q 003171 486 ---LE-G---NLLGGWVA-HSSPVIKMAV--GAGYIFTLANHGGIRGWNV 525 (842)
Q Consensus 486 ---~~-g---~~i~~l~g-H~~~V~sla~--dg~~l~S~S~DgtIrvWd~ 525 (842)
.. + +.+..+.| |...|.++.+ .+..++|||.||.+.+|..
T Consensus 296 ~~~~~s~~~~~~~a~l~g~~~eiVR~i~~~~~~~~l~TGGEDG~l~~Wk~ 345 (376)
T KOG1188|consen 296 LVDTSSGSLLTEPAILQGGHEEIVRDILFDVKNDVLYTGGEDGLLQAWKV 345 (376)
T ss_pred eeecccccccCccccccCCcHHHHHHHhhhcccceeeccCCCceEEEEec
Confidence 22 2 35677777 7777788775 4668999999999999985
|
|
| >KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.23 E-value=4.3e-10 Score=122.45 Aligned_cols=262 Identities=15% Similarity=0.145 Sum_probs=161.8
Q ss_pred EEEEecCCCEEEEeCCCCccccccccccccCCCCCCCCCCeeeeeecCCCeEEEEEcCCCCEEEEE--eCCCcEEEEECC
Q 003171 144 QLWAGGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSG--HRDGRIMCWKMN 221 (842)
Q Consensus 144 ~l~~~~D~~vrvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~V~~la~dpdg~~LaSG--s~DGtIrlWdl~ 221 (842)
.+.+++-..+++||+.......| -.+.+. ...+.++.+..... |+++ +.|..|++|.-.
T Consensus 5 l~~aS~gd~~kl~D~s~~~~~~~--------------~~~~t~----~pg~~s~~w~~~n~-lvvas~~gdk~~~~~~K~ 65 (673)
T KOG4378|consen 5 LHVASTGDKTKLSDFSDLETKSE--------------YVHQTA----EPGDFSFNWQRRNF-LVVASMAGDKVMRIKEKD 65 (673)
T ss_pred eeeeccCCceEEeecccccCccc--------------cccCCC----CCcceeeeccccce-EEEeecCCceeEEEeccc
Confidence 45567777999999965432222 011100 22377777875442 4444 466789999765
Q ss_pred CCccCCCCCcceeEEeccc-CCcEEEEEEecCCCEEEeeCCCcEEEEeCCCccceeecCCCceeeeEEEEeeceeecccc
Q 003171 222 ARLLDSDDGFGEVLSWQAH-RGPVLSLCISSYGDLWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSH 300 (842)
Q Consensus 222 ~g~~~~~~~~~~~~~l~gH-~~~V~slafs~dG~L~SgS~DgtIrvWd~~t~~~~l~~~~~~~~~~~l~~~~s~~~l~~~ 300 (842)
+.. ........+.|- .--|.+..+| -.+++|+..++|||||+..... +. -+++|
T Consensus 66 g~~----~~Vp~~~k~~gd~~~Cv~~~s~S--~y~~sgG~~~~Vkiwdl~~kl~---hr----------------~lkdh 120 (673)
T KOG4378|consen 66 GKT----PEVPRVRKLTGDNAFCVACASQS--LYEISGGQSGCVKIWDLRAKLI---HR----------------FLKDH 120 (673)
T ss_pred CCC----CccceeeccccchHHHHhhhhcc--eeeeccCcCceeeehhhHHHHH---hh----------------hccCC
Confidence 531 111122223332 1223333443 1378999999999999964211 10 12223
Q ss_pred eeccceeeeecCCEEEEEEcCCCCEEEEeCCC-cEEEEEccCCcEEEEeecC-CceEeeeecccCCCcccccceEEEEEe
Q 003171 301 LSVNGFSSILTSDIKNLLSDHSRAKVWSAGFL-SFALWDARTRELLKVFNID-GQIENRVDMSLLPDFAMEDEFKTKIVT 378 (842)
Q Consensus 301 ~~~~~~~~~~s~~v~~las~~~~~~v~s~s~~-tI~lWD~~tg~~l~~l~~~-~~~~~~~~~s~~~~~~~~~~~~~~~~s 378 (842)
...|.++.....+..|++++++ -|.|-.+.|+..-.+|..+ +|
T Consensus 121 ----------~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~sgq------------------------- 165 (673)
T KOG4378|consen 121 ----------QSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFTIDSGQ------------------------- 165 (673)
T ss_pred ----------cceeEEEEecCCcceeEEeccCCcEEEEecccCccccceecCCCC-------------------------
Confidence 3457777777777788888864 5777777776554444321 11
Q ss_pred cCCCCccceeeeEeecCcceEEecCCcEEEEeecCccccCCCceEEEEECCCCc--EEEEeCCCeEEEEcCCCCe-e-ee
Q 003171 379 SSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGM--IWTGGANGLLLQWDPNGNR-L-QD 454 (842)
Q Consensus 379 ~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~al~~s~dg~--l~Sgs~DgtIrlWD~~g~~-l-~~ 454 (842)
.|.-|.+++-.+ |.+++.+|+|.|||++|.. + .-
T Consensus 166 ------------------------------------------svRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~ 203 (673)
T KOG4378|consen 166 ------------------------------------------SVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHA 203 (673)
T ss_pred ------------------------------------------eEEEeecccccceeeEeeccCCeEEEEeccCCCcccch
Confidence 112233444443 6788999999999998743 3 33
Q ss_pred eecCCccEEEEE--ec-CCEEEEEecCcEEEEEeCCCc-ccccccccccCEEEEE--eCCCEEEEEcCCCCeeeccccC
Q 003171 455 FQYLPFAVQCLC--TF-GSQIWVGYMNGIVQVLDLEGN-LLGGWVAHSSPVIKMA--VGAGYIFTLANHGGIRGWNVTS 527 (842)
Q Consensus 455 l~~H~~~V~sls--~d-G~~LasGs~DgtIrlWD~~g~-~i~~l~gH~~~V~sla--~dg~~l~S~S~DgtIrvWd~~~ 527 (842)
...|+.+-..|+ +. ...|++-+.|..|.+||...+ ....+. -..+..+|+ ++|.+|+.|...|.|..+|++.
T Consensus 204 ~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~-y~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~ 281 (673)
T KOG4378|consen 204 SEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRLT-YSHPLSTVAFSECGTYLCAGNSKGELIAYDMRS 281 (673)
T ss_pred hhhccCCcCcceecCCccceEEEecccceEEEeecccccccceee-ecCCcceeeecCCceEEEeecCCceEEEEeccc
Confidence 456887766554 43 458889999999999998744 333332 345677777 4889999999999999999875
|
|
| >KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown] | Back alignment and domain information |
|---|
Probab=99.20 E-value=5.1e-10 Score=115.01 Aligned_cols=233 Identities=15% Similarity=0.117 Sum_probs=145.5
Q ss_pred CCCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCCC--EEEeeCC-------CcEEEEeCCCccceeecCCC
Q 003171 211 RDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD--LWSGSEG-------GGIKIWPWEAIEKALSLKPE 281 (842)
Q Consensus 211 ~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~--L~SgS~D-------gtIrvWd~~t~~~~l~~~~~ 281 (842)
.|+.|.+-+++.+. + .-....|..|.+.|..|+-+|-.. |+|+-.| ..+-||.+......-...+
T Consensus 38 ~dNqVhll~~d~e~----s-~l~skvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~t- 111 (370)
T KOG1007|consen 38 EDNQVHLLRLDSEG----S-ELLSKVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSST- 111 (370)
T ss_pred CcceeEEEEecCcc----c-hhhhhhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccch-
Confidence 45666666665541 1 112334667788999999888654 4554332 3567898753211100000
Q ss_pred ceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcCCCCEEEEeCCCcEEEEEccCCcEE-EEeecCCceEeeeec
Q 003171 282 ERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGFLSFALWDARTRELL-KVFNIDGQIENRVDM 360 (842)
Q Consensus 282 ~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s~~tI~lWD~~tg~~l-~~l~~~~~~~~~~~~ 360 (842)
-.++.. |. ....+++.|+...|++.++++..+..|.+|++..+..+ ..+......
T Consensus 112 lE~v~~---------Ld---------teavg~i~cvew~Pns~klasm~dn~i~l~~l~ess~~vaev~ss~s~------ 167 (370)
T KOG1007|consen 112 LECVAS---------LD---------TEAVGKINCVEWEPNSDKLASMDDNNIVLWSLDESSKIVAEVLSSESA------ 167 (370)
T ss_pred hhHhhc---------CC---------HHHhCceeeEEEcCCCCeeEEeccCceEEEEcccCcchheeecccccc------
Confidence 000000 00 00134788999999999999999999999999765432 111100000
Q ss_pred ccCCCcccccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEeecCccccCCCceEEEEECCCCcEEEEeCCC
Q 003171 361 SLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGMIWTGGANG 440 (842)
Q Consensus 361 s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~al~~s~dg~l~Sgs~Dg 440 (842)
+++ ..| + .|.+..| .||..+....|+
T Consensus 168 ----------e~~---------------~~f--------t-----------sg~WspH----------Hdgnqv~tt~d~ 193 (370)
T KOG1007|consen 168 ----------EMR---------------HSF--------T-----------SGAWSPH----------HDGNQVATTSDS 193 (370)
T ss_pred ----------ccc---------------cee--------c-----------ccccCCC----------CccceEEEeCCC
Confidence 000 000 0 1122221 245544445689
Q ss_pred eEEEEcC-CCCeeeee-ecCCccEEEEEecCC---EEEEEecCcEEEEEeCC-C-cccccccccccCEEEEEe---CCCE
Q 003171 441 LLLQWDP-NGNRLQDF-QYLPFAVQCLCTFGS---QIWVGYMNGIVQVLDLE-G-NLLGGWVAHSSPVIKMAV---GAGY 510 (842)
Q Consensus 441 tIrlWD~-~g~~l~~l-~~H~~~V~sls~dG~---~LasGs~DgtIrlWD~~-g-~~i~~l~gH~~~V~sla~---dg~~ 510 (842)
+++.||+ +-++.-.+ ..|...|..+.++.+ +|++|+.||.||+||.+ . .+++++.+|+.+||+|.+ ..+.
T Consensus 194 tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hdqL 273 (370)
T KOG1007|consen 194 TLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHDQL 273 (370)
T ss_pred cEEEEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEecCccceE
Confidence 9999999 54443333 468889999876532 89999999999999987 3 479999999999999985 4578
Q ss_pred EEEEcCCCCeeeccccC
Q 003171 511 IFTLANHGGIRGWNVTS 527 (842)
Q Consensus 511 l~S~S~DgtIrvWd~~~ 527 (842)
++|+|.|..|.+|...+
T Consensus 274 iLs~~SDs~V~Lsca~s 290 (370)
T KOG1007|consen 274 ILSGGSDSAVNLSCASS 290 (370)
T ss_pred EEecCCCceeEEEeccc
Confidence 99999999999998644
|
|
| >KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.18 E-value=1.7e-10 Score=136.93 Aligned_cols=231 Identities=19% Similarity=0.266 Sum_probs=150.6
Q ss_pred EEEEe--cCCCEEEEeCCCCccccccccccccCCCCCCCCCCeeeeeecCCCeEEEEEcCCCC-EEEEEeCCCcEEEEEC
Q 003171 144 QLWAG--GENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASG-VVWSGHRDGRIMCWKM 220 (842)
Q Consensus 144 ~l~~~--~D~~vrvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~V~~la~dpdg~-~LaSGs~DGtIrlWdl 220 (842)
.|.+| .||.|-+||........ +.....+...| .++|..|.|++.++ +||||+.||.|-|||+
T Consensus 81 GlIaGG~edG~I~ly~p~~~~~~~-------------~~~~la~~~~h-~G~V~gLDfN~~q~nlLASGa~~geI~iWDl 146 (1049)
T KOG0307|consen 81 GLIAGGLEDGNIVLYDPASIIANA-------------SEEVLATKSKH-TGPVLGLDFNPFQGNLLASGADDGEILIWDL 146 (1049)
T ss_pred ceeeccccCCceEEecchhhccCc-------------chHHHhhhccc-CCceeeeeccccCCceeeccCCCCcEEEecc
Confidence 46764 59999999987642111 11111122345 88999999999766 9999999999999999
Q ss_pred CCCccCCCCCcceeEEecccCCcEEEEEEecCCC--EEEeeCCCcEEEEeCCCccceeecCCCceeeeEEEEeeceeecc
Q 003171 221 NARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD--LWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLR 298 (842)
Q Consensus 221 ~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~--L~SgS~DgtIrvWd~~t~~~~l~~~~~~~~~~~l~~~~s~~~l~ 298 (842)
..-. .++... -+.-.+.|.+|+|...-. |+||+.+|.+-|||+...+..+.+......+
T Consensus 147 nn~~----tP~~~~--~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~------------- 207 (1049)
T KOG0307|consen 147 NKPE----TPFTPG--SQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRM------------- 207 (1049)
T ss_pred CCcC----CCCCCC--CCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccccccCCCcc-------------
Confidence 8742 122111 122356799999976433 7899999999999997654444443221100
Q ss_pred cceeccceeeeecCCEEEEEEcCCCC-EEEEeC-C---CcEEEEEccCCc-EEEEeecCCceEeeeecccCCCcccccce
Q 003171 299 SHLSVNGFSSILTSDIKNLLSDHSRA-KVWSAG-F---LSFALWDARTRE-LLKVFNIDGQIENRVDMSLLPDFAMEDEF 372 (842)
Q Consensus 299 ~~~~~~~~~~~~s~~v~~las~~~~~-~v~s~s-~---~tI~lWD~~tg~-~l~~l~~~~~~~~~~~~s~~~~~~~~~~~ 372 (842)
.+..++-.++.. .|+.++ + -.|.+||++.-. .+++
T Consensus 208 --------------~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~------------------------- 248 (1049)
T KOG0307|consen 208 --------------HCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKI------------------------- 248 (1049)
T ss_pred --------------ceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCchhh-------------------------
Confidence 011122222221 233333 2 268999986311 1111
Q ss_pred EEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEeecCccccCCCceEEEEECCCC-c-EEEEeCCCeEEEEcC-CC
Q 003171 373 KTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDG-M-IWTGGANGLLLQWDP-NG 449 (842)
Q Consensus 373 ~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~al~~s~dg-~-l~Sgs~DgtIrlWD~-~g 449 (842)
+..|...|.++.+.+.+ . |+|++.|+.|.+|+. +|
T Consensus 249 ------------------------------------------~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tg 286 (1049)
T KOG0307|consen 249 ------------------------------------------LEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTG 286 (1049)
T ss_pred ------------------------------------------hcccccceeeeccCCCCchhhhcccCCCCeeEecCCCc
Confidence 22344445555554433 4 789999999999999 79
Q ss_pred CeeeeeecCCccEEEEEe---cCCEEEEEecCcEEEEEeCCC
Q 003171 450 NRLQDFQYLPFAVQCLCT---FGSQIWVGYMNGIVQVLDLEG 488 (842)
Q Consensus 450 ~~l~~l~~H~~~V~sls~---dG~~LasGs~DgtIrlWD~~g 488 (842)
+.+.++-...+++..+.+ +...+++++.||.|.|+.+.|
T Consensus 287 Evl~~~p~~~nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~~ 328 (1049)
T KOG0307|consen 287 EVLGELPAQGNWCFDVQWCPRNPSVMAAASFDGKISIYSLQG 328 (1049)
T ss_pred eEeeecCCCCcceeeeeecCCCcchhhhheeccceeeeeeec
Confidence 999999888888888765 345899999999999999863
|
|
| >KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.17 E-value=2.8e-10 Score=122.57 Aligned_cols=70 Identities=20% Similarity=0.260 Sum_probs=61.9
Q ss_pred EEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCCC-EEEeeCCCcEEEEeCCCcc
Q 003171 195 MCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIE 273 (842)
Q Consensus 195 ~~la~dpdg~~LaSGs~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~~t~~ 273 (842)
.+++|+++|..|++|..||++|+|+...- ..+....+|.+.|.+|.|||||+ |+|-+.| ..+||+++++.
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~--------~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~ 218 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSM--------LTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGA 218 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcc--------hhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCc
Confidence 78999999999999999999999997663 45666789999999999999998 6888888 89999998863
|
|
| >KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.17 E-value=5.3e-09 Score=121.20 Aligned_cols=281 Identities=14% Similarity=0.093 Sum_probs=162.4
Q ss_pred cCCCEEEEeCCCCccccccccccccCCCCCCCCCCeeeeeecCCCeEEEEEcC-CCCEEEEEeCCCcEEEEECCCCccCC
Q 003171 149 GENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDE-ASGVVWSGHRDGRIMCWKMNARLLDS 227 (842)
Q Consensus 149 ~D~~vrvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~V~~la~dp-dg~~LaSGs~DGtIrlWdl~~g~~~~ 227 (842)
.+..+.|||+..... |... +.-.++|.|+.|.| +..+|+.|+++|.|-+||+..+..
T Consensus 220 ~~~~~~vW~~~~p~~-------------------Pe~~-~~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~-- 277 (555)
T KOG1587|consen 220 PDGVLLVWSLKNPNT-------------------PELV-LESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSD-- 277 (555)
T ss_pred CCceEEEEecCCCCC-------------------ceEE-EecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCC--
Confidence 345899999976421 1111 11167899999999 558999999999999999987630
Q ss_pred CCCcceeEEecccCCcEEEEEEecCC---CEEEeeCCCcEEEEeCCCccceeecCCCceeeeEEEEeeceeecccceecc
Q 003171 228 DDGFGEVLSWQAHRGPVLSLCISSYG---DLWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVN 304 (842)
Q Consensus 228 ~~~~~~~~~l~gH~~~V~slafs~dG---~L~SgS~DgtIrvWd~~t~~~~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~ 304 (842)
..+......--.|+.+|+.+.+..+- .++|+|.||.|..|+++...........+... ........
T Consensus 278 ~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~--------~~~~~~~~--- 346 (555)
T KOG1587|consen 278 TPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKK--------HKGQQSSK--- 346 (555)
T ss_pred CCCcccccccccCCcCeEEEEEeccCCCCceEEEecCCcEeeeeccccccchhhccccccc--------cccccccc---
Confidence 00222222334689999999997652 39999999999999875422100000000000 00000000
Q ss_pred ceeeeecCCEEEEEEcCCC-CEEEEeCCCcEEEEEccCCcEEEEeecCCceEeeeecccCCCcccccceEEEEEecCCCC
Q 003171 305 GFSSILTSDIKNLLSDHSR-AKVWSAGFLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKD 383 (842)
Q Consensus 305 ~~~~~~s~~v~~las~~~~-~~v~s~s~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~ 383 (842)
...+..+.+.+.. ..+..|++. |.+.+ +.+++
T Consensus 347 ------~~~~t~~~F~~~~p~~FiVGTe~---------G~v~~--------------------------------~~r~g 379 (555)
T KOG1587|consen 347 ------AVGATSLKFEPTDPNHFIVGTEE---------GKVYK--------------------------------GCRKG 379 (555)
T ss_pred ------ccceeeEeeccCCCceEEEEcCC---------cEEEE--------------------------------EeccC
Confidence 1112223322211 112222211 11100 00000
Q ss_pred ccceeeeEeecCcceEEecCCcEEEEeecCccccCCCceEEEEECCCCc-EEEEeCCCeEEEEcCC--CCeeeeeecCCc
Q 003171 384 KAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGM-IWTGGANGLLLQWDPN--GNRLQDFQYLPF 460 (842)
Q Consensus 384 ~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~al~~s~dg~-l~Sgs~DgtIrlWD~~--g~~l~~l~~H~~ 460 (842)
.... .. ....++ ..+.-|.+.|.++.++|-+. +...+.|-+||||... ...+-.+..+..
T Consensus 380 ~~~~-~~------~~~~~~----------~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~~~~~~ 442 (555)
T KOG1587|consen 380 YTPA-PE------VSYKGH----------STFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLSLDSSPD 442 (555)
T ss_pred Cccc-cc------cccccc----------ccccccCcceEeeecCCCccceeeeeccceeEeccccCCCCcchhhhhccc
Confidence 0000 00 000000 01334667788888888765 4333348899999874 456666777888
Q ss_pred cEEEEEec---CCEEEEEecCcEEEEEeCCC---cccccccccccCEEEEEe--CCCEEEEEcCCCCeeecccc
Q 003171 461 AVQCLCTF---GSQIWVGYMNGIVQVLDLEG---NLLGGWVAHSSPVIKMAV--GAGYIFTLANHGGIRGWNVT 526 (842)
Q Consensus 461 ~V~sls~d---G~~LasGs~DgtIrlWD~~g---~~i~~l~gH~~~V~sla~--dg~~l~S~S~DgtIrvWd~~ 526 (842)
.|++++.. ...++++..||.|.+||+.- .++.+..-+......+.+ .|+.|+.|...|+|.+|++.
T Consensus 443 ~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~~Pv~s~~~~~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~ 516 (555)
T KOG1587|consen 443 YVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDDEEPVLSQKVCSPALTRVRWSPNGKLLAVGDANGTTHILKLS 516 (555)
T ss_pred eeeeeEEcCcCceEEEEEcCCCceehhhhhccccCCcccccccccccceeecCCCCcEEEEecCCCcEEEEEcC
Confidence 89998754 34888999999999999852 355555555444455553 58889999999999999973
|
|
| >KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.16 E-value=8.1e-11 Score=134.62 Aligned_cols=260 Identities=15% Similarity=0.166 Sum_probs=169.2
Q ss_pred ceeEEecccCCcEEEEEEecCCC-EEEeeCCCcEEEEeCCCccceeecCCCceeeeEEEEeeceeecccceeccceeeee
Q 003171 232 GEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSIL 310 (842)
Q Consensus 232 ~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~~t~~~~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~ 310 (842)
+.+..+.||.++|+|++|+..|+ +++||+|..+|||..++..+.- +++||
T Consensus 181 k~ikrLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lA-------------------s~rGh---------- 231 (1113)
T KOG0644|consen 181 KNIKRLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLA-------------------SCRGH---------- 231 (1113)
T ss_pred HHHHHHHhhhhheeeeeeccccceEeecCccceeeeeeccchhhhc-------------------cCCCC----------
Confidence 33456789999999999999998 8999999999999987754322 23344
Q ss_pred cCCEEEEEEcCCCCEEEEeC-CCcEEEEEccCCcEEEEeecCCceEeeeecccCCCcccccceEEEEEecCCCCccceee
Q 003171 311 TSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSF 389 (842)
Q Consensus 311 s~~v~~las~~~~~~v~s~s-~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~ 389 (842)
+++++-++.+..+..+++++ |..|++|-+.+|.++.++.+|...+..+++++.+..+-+++.+.|.+.-. . .
T Consensus 232 s~ditdlavs~~n~~iaaaS~D~vIrvWrl~~~~pvsvLrghtgavtaiafsP~~sss~dgt~~~wd~r~~----~---~ 304 (1113)
T KOG0644|consen 232 SGDITDLAVSSNNTMIAAASNDKVIRVWRLPDGAPVSVLRGHTGAVTAIAFSPRASSSDDGTCRIWDARLE----P---R 304 (1113)
T ss_pred ccccchhccchhhhhhhhcccCceEEEEecCCCchHHHHhccccceeeeccCccccCCCCCceEecccccc----c---c
Confidence 66777888877777888887 56899999999999999999887777778877654333333222111100 0 0
Q ss_pred eEeecCcceEEecCCcEEEEeecCccccCCCceEEEEECCCCc-EEEEeCCCeEEEEcCCCCeeeeeecCCccE---EEE
Q 003171 390 GFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGM-IWTGGANGLLLQWDPNGNRLQDFQYLPFAV---QCL 465 (842)
Q Consensus 390 ~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~al~~s~dg~-l~Sgs~DgtIrlWD~~g~~l~~l~~H~~~V---~sl 465 (842)
.+.++- -.+.+. ..+.++.+-..+. .+||+.|++-+.|...-. ..|...+ +..
T Consensus 305 ~y~prp-----------------~~~~~~-~~~~s~~~~~~~~~f~Tgs~d~ea~n~e~~~l-----~~~~~~lif~t~s 361 (1113)
T KOG0644|consen 305 IYVPRP-----------------LKFTEK-DLVDSILFENNGDRFLTGSRDGEARNHEFEQL-----AWRSNLLIFVTRS 361 (1113)
T ss_pred ccCCCC-----------------CCcccc-cceeeeeccccccccccccCCcccccchhhHh-----hhhccceEEEecc
Confidence 000000 001111 2233344444444 789999998888876311 1111111 111
Q ss_pred EecCCEEEEEecCcEEEEEeCC-CcccccccccccCEEEEEe---CCCEEEEEcCCCCeeeccccCCCCCcchhhhhhcc
Q 003171 466 CTFGSQIWVGYMNGIVQVLDLE-GNLLGGWVAHSSPVIKMAV---GAGYIFTLANHGGIRGWNVTSPGPLDSILCKELAG 541 (842)
Q Consensus 466 s~dG~~LasGs~DgtIrlWD~~-g~~i~~l~gH~~~V~sla~---dg~~l~S~S~DgtIrvWd~~~~~~~d~~l~~~l~~ 541 (842)
+....+.+++=.+-.+.+|++. |.+.+.+.+|.+.++.|.. ++....|++.||.+.|||+....|+.-........
T Consensus 362 sd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~pik~y~~gh~kl 441 (1113)
T KOG0644|consen 362 SDLSSIVVTARNDHRLCVWNLYTGQLLHNLMGHSDEVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGIPIKHYFIGHGKL 441 (1113)
T ss_pred ccccccceeeeeeeEeeeeecccchhhhhhcccccceeeeeecCCCcHhhhhccCCCceEeeecccCCcceeeeccccee
Confidence 1112456666678899999985 8999999999999998873 66677799999999999987766654433222222
Q ss_pred ccccccccc
Q 003171 542 KEFLYTRME 550 (842)
Q Consensus 542 r~~~y~~~~ 550 (842)
-.+.|++.+
T Consensus 442 ~d~kFSqdg 450 (1113)
T KOG0644|consen 442 VDGKFSQDG 450 (1113)
T ss_pred eccccCCCC
Confidence 234444443
|
|
| >PRK01742 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.13 E-value=2e-09 Score=123.86 Aligned_cols=208 Identities=13% Similarity=0.061 Sum_probs=126.4
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCC---cEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCCC-EEE-eeCCCcEE
Q 003171 191 VSSVMCMVGDEASGVVWSGHRDG---RIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWS-GSEGGGIK 265 (842)
Q Consensus 191 ~~~V~~la~dpdg~~LaSGs~DG---tIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~S-gS~DgtIr 265 (842)
..+|.+..|+|||+.|+..+.++ .|++||+.++. .+.+..+.+|. .+++|+|||+ |+. .+.||.++
T Consensus 203 ~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~------~~~l~~~~g~~---~~~~wSPDG~~La~~~~~~g~~~ 273 (429)
T PRK01742 203 SQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGA------RKVVASFRGHN---GAPAFSPDGSRLAFASSKDGVLN 273 (429)
T ss_pred CCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCc------eEEEecCCCcc---CceeECCCCCEEEEEEecCCcEE
Confidence 55789999999999999887653 69999998862 12233355554 3679999997 654 45788887
Q ss_pred EEeC--CCccceeecCCCceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcCCCCEEEEeC--CCcEEEEEccC
Q 003171 266 IWPW--EAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG--FLSFALWDART 341 (842)
Q Consensus 266 vWd~--~t~~~~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s--~~tI~lWD~~t 341 (842)
||.+ .++. ...+.. + ...+.....++++..++.++ ++...||++..
T Consensus 274 Iy~~d~~~~~-~~~lt~-------------------~----------~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~ 323 (429)
T PRK01742 274 IYVMGANGGT-PSQLTS-------------------G----------AGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSA 323 (429)
T ss_pred EEEEECCCCC-eEeecc-------------------C----------CCCcCCEEECCCCCEEEEEECCCCCceEEEEEC
Confidence 7754 3321 111110 0 11122344556666555443 24566666432
Q ss_pred CcE-EEEeecCCceEeeeecccCCCcccccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEeecCccccCCC
Q 003171 342 REL-LKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNR 420 (842)
Q Consensus 342 g~~-l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~ 420 (842)
... ...+ + +..
T Consensus 324 ~~~~~~~l----------------------------------------------------~----------------~~~ 335 (429)
T PRK01742 324 SGGGASLV----------------------------------------------------G----------------GRG 335 (429)
T ss_pred CCCCeEEe----------------------------------------------------c----------------CCC
Confidence 100 0000 0 000
Q ss_pred ceEEEEECCCCc-EEEEeCCCeEEEEcC-CCCeeeeeecCCccEEEEEecCCEEEEEecCcEEEEEe---CCCccccccc
Q 003171 421 RTEALTTSIDGM-IWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQCLCTFGSQIWVGYMNGIVQVLD---LEGNLLGGWV 495 (842)
Q Consensus 421 ~v~al~~s~dg~-l~Sgs~DgtIrlWD~-~g~~l~~l~~H~~~V~sls~dG~~LasGs~DgtIrlWD---~~g~~i~~l~ 495 (842)
....++|||+ |+.++.++ +.+||+ +|+.......+...-.++++||++|+.++.++.+++|+ .+|+.++.+.
T Consensus 336 --~~~~~SpDG~~ia~~~~~~-i~~~Dl~~g~~~~lt~~~~~~~~~~sPdG~~i~~~s~~g~~~~l~~~~~~G~~~~~l~ 412 (429)
T PRK01742 336 --YSAQISADGKTLVMINGDN-VVKQDLTSGSTEVLSSTFLDESPSISPNGIMIIYSSTQGLGKVLQLVSADGRFKARLP 412 (429)
T ss_pred --CCccCCCCCCEEEEEcCCC-EEEEECCCCCeEEecCCCCCCCceECCCCCEEEEEEcCCCceEEEEEECCCCceEEcc
Confidence 1235788887 66666666 566998 56544322222222235688999999999999888776 4688889999
Q ss_pred ccccCEEEEEeCC
Q 003171 496 AHSSPVIKMAVGA 508 (842)
Q Consensus 496 gH~~~V~sla~dg 508 (842)
+|.+.+...++.+
T Consensus 413 ~~~g~~~~p~wsp 425 (429)
T PRK01742 413 GSDGQVKFPAWSP 425 (429)
T ss_pred CCCCCCCCcccCC
Confidence 9988887776554
|
|
| >KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.12 E-value=4e-09 Score=125.61 Aligned_cols=250 Identities=16% Similarity=0.218 Sum_probs=145.8
Q ss_pred CCCeEEEEEcCC-CCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCCC-EEEeeCCCcEEEEe
Q 003171 191 VSSVMCMVGDEA-SGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWP 268 (842)
Q Consensus 191 ~~~V~~la~dpd-g~~LaSGs~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd 268 (842)
.+.|..++.++. +.+++|||.||+||+|+...-.++. ..++...++.--.+.|.++.+.+.|+ ++.|+.||.|++-+
T Consensus 1048 s~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~-~s~rS~ltys~~~sr~~~vt~~~~~~~~Av~t~DG~v~~~~ 1126 (1431)
T KOG1240|consen 1048 SSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEG-GSARSELTYSPEGSRVEKVTMCGNGDQFAVSTKDGSVRVLR 1126 (1431)
T ss_pred cccccceeecCCCCceEEEecCCceEEEeeehhhhcCc-ceeeeeEEEeccCCceEEEEeccCCCeEEEEcCCCeEEEEE
Confidence 566777777664 4999999999999999976432110 12234455544467899999999887 88889999999999
Q ss_pred CCCc--cceeecCCCceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcC--CC-CEEEEeCCCcEEEEEccCCc
Q 003171 269 WEAI--EKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDH--SR-AKVWSAGFLSFALWDARTRE 343 (842)
Q Consensus 269 ~~t~--~~~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~--~~-~~v~s~s~~tI~lWD~~tg~ 343 (842)
++-. .+.. . ... + ..+++.. +. -+.+-++.. .. ..++......|..||+++..
T Consensus 1127 id~~~~~~~~-~-------~~~---r-i~n~~~~---g~-------vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~ 1184 (1431)
T KOG1240|consen 1127 IDHYNVSKRV-A-------TQV---R-IPNLKKD---GV-------VVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRH 1184 (1431)
T ss_pred ccccccccce-e-------eee---e-cccccCC---Cc-------eEEeecccccccceeEEEEEeccceEEecchhhh
Confidence 8641 1100 0 000 0 0000000 00 011111111 11 12223334567788876532
Q ss_pred EEEEeecCCceEeeeecccCCCcccccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEeecCccccCCCceE
Q 003171 344 LLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTE 423 (842)
Q Consensus 344 ~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~ 423 (842)
-+-+++ +....+.|+
T Consensus 1185 ~~w~lk-----------------------------------------------------------------~~~~hG~vT 1199 (1431)
T KOG1240|consen 1185 DAWRLK-----------------------------------------------------------------NQLRHGLVT 1199 (1431)
T ss_pred hHHhhh-----------------------------------------------------------------cCcccccee
Confidence 211100 111234577
Q ss_pred EEEECCCCc-EEEEeCCCeEEEEcCC-CCeeeeee-cCCccEEEEE--e-cC--CEEEEEe--cCcEEEEEeCC-Ccccc
Q 003171 424 ALTTSIDGM-IWTGGANGLLLQWDPN-GNRLQDFQ-YLPFAVQCLC--T-FG--SQIWVGY--MNGIVQVLDLE-GNLLG 492 (842)
Q Consensus 424 al~~s~dg~-l~Sgs~DgtIrlWD~~-g~~l~~l~-~H~~~V~sls--~-dG--~~LasGs--~DgtIrlWD~~-g~~i~ 492 (842)
+++.+|.+. +++|+..|.+.+||+. +..+.... ++..+|+-+. + -+ ..+++++ ..+.|.+|+.+ |.+-.
T Consensus 1200 Si~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~~~~ 1279 (1431)
T KOG1240|consen 1200 SIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETGLRQT 1279 (1431)
T ss_pred EEEecCCceEEEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecccCCCceeeeecccCcceE
Confidence 888999888 7899999999999995 55555443 3445666543 3 23 4555555 47899999987 54333
Q ss_pred ccccc-----------c------c---CEEE-EEeCCCEEEEEcCCCCeeeccccCC
Q 003171 493 GWVAH-----------S------S---PVIK-MAVGAGYIFTLANHGGIRGWNVTSP 528 (842)
Q Consensus 493 ~l~gH-----------~------~---~V~s-la~dg~~l~S~S~DgtIrvWd~~~~ 528 (842)
++-.. . . .+.+ +...+..+++|+.|..||.||...|
T Consensus 1280 vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~p 1336 (1431)
T KOG1240|consen 1280 VLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTRP 1336 (1431)
T ss_pred EEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCCCc
Confidence 33222 1 1 1111 2223456889999999999997654
|
|
| >KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.11 E-value=4.9e-10 Score=119.95 Aligned_cols=176 Identities=19% Similarity=0.177 Sum_probs=126.8
Q ss_pred CCCeEEEEEcCCCC-EEEEEeCCCcEEEEECCCCccCCC-CCcceeEEecccCCcEEEEEEecCCC-EEEeeCCCcEEEE
Q 003171 191 VSSVMCMVGDEASG-VVWSGHRDGRIMCWKMNARLLDSD-DGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIW 267 (842)
Q Consensus 191 ~~~V~~la~dpdg~-~LaSGs~DGtIrlWdl~~g~~~~~-~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvW 267 (842)
..||..+.|.+++. .|+||+.|..||+|.++.+..... ...+....|..|..+|+.|.|+|+|. |+||+++|.|-+|
T Consensus 13 ~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lW 92 (434)
T KOG1009|consen 13 HEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLW 92 (434)
T ss_pred CCceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEE
Confidence 56899999988776 999999999999999877532110 12333456789999999999999998 6899999999999
Q ss_pred eCCCccceeecCCCceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcCCCCEEEEeCCCcEEEEEccCCcEEEE
Q 003171 268 PWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGFLSFALWDARTRELLKV 347 (842)
Q Consensus 268 d~~t~~~~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s~~tI~lWD~~tg~~l~~ 347 (842)
...... .. |.++ +. ..
T Consensus 93 k~~~~~------------------------------------------~~--------------------~~d~-e~-~~ 108 (434)
T KOG1009|consen 93 KQGDVR------------------------------------------IF--------------------DADT-EA-DL 108 (434)
T ss_pred EecCcC------------------------------------------Cc--------------------cccc-hh-hh
Confidence 752200 00 0001 00 00
Q ss_pred eecCCceEeeeecccCCCcccccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEeecCccccCCCceEEEEE
Q 003171 348 FNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTT 427 (842)
Q Consensus 348 l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~al~~ 427 (842)
..+ .|.+.. .+.+|...+..+++
T Consensus 109 ---~ke--------------------~w~v~k----------------------------------~lr~h~~diydL~W 131 (434)
T KOG1009|consen 109 ---NKE--------------------KWVVKK----------------------------------VLRGHRDDIYDLAW 131 (434)
T ss_pred ---Ccc--------------------ceEEEE----------------------------------Eecccccchhhhhc
Confidence 000 000000 02234455667888
Q ss_pred CCCCc-EEEEeCCCeEEEEcC-CCCeeeeeecCCccEEEEEec--CCEEEEEecCcEEEEEeCC
Q 003171 428 SIDGM-IWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQCLCTF--GSQIWVGYMNGIVQVLDLE 487 (842)
Q Consensus 428 s~dg~-l~Sgs~DgtIrlWD~-~g~~l~~l~~H~~~V~sls~d--G~~LasGs~DgtIrlWD~~ 487 (842)
+||++ +++|+.|+++++||+ .|+.+..+..|...|+-++.| ++++++=+.|...+...+.
T Consensus 132 s~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~yvqgvawDpl~qyv~s~s~dr~~~~~~~~ 195 (434)
T KOG1009|consen 132 SPDSNFLVSGSVDNSVRLWDVHAGQLLAILDDHEHYVQGVAWDPLNQYVASKSSDRHPEGFSAK 195 (434)
T ss_pred cCCCceeeeeeccceEEEEEeccceeEeeccccccccceeecchhhhhhhhhccCcccceeeee
Confidence 99998 789999999999999 899999999999999988765 6899999999877777764
|
|
| >KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.11 E-value=2.2e-08 Score=107.49 Aligned_cols=128 Identities=19% Similarity=0.318 Sum_probs=89.6
Q ss_pred eeEEEEecCCE--EEE--ecCCCEEEEeCCCCccccccccccccCCCCCCCCCCeeeeee-cCCCeEEEEEcCCCCEEEE
Q 003171 134 FLRTIVCTEEQ--LWA--GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVK-GVSSVMCMVGDEASGVVWS 208 (842)
Q Consensus 134 ~~~~l~~~~~~--l~~--~~D~~vrvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~V~~la~dpdg~~LaS 208 (842)
++..+.+..+. ..+ |.|..||+|-+......+. ....-|...+. |..+|.++.|+|+|.+|||
T Consensus 15 pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~------------~~~V~y~s~Ls~H~~aVN~vRf~p~gelLAS 82 (434)
T KOG1009|consen 15 PVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGG------------DMKVEYLSSLSRHTRAVNVVRFSPDGELLAS 82 (434)
T ss_pred ceEEEEeccCcccceecccCccceeeeeeeecCCCCC------------ceeEEEeecccCCcceeEEEEEcCCcCeeee
Confidence 45556655432 333 6799999998865443321 01111222233 2889999999999999999
Q ss_pred EeCCCcEEEEECCCCc---cCC-----CCCcceeEEecccCCcEEEEEEecCCC-EEEeeCCCcEEEEeCCCcc
Q 003171 209 GHRDGRIMCWKMNARL---LDS-----DDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIE 273 (842)
Q Consensus 209 Gs~DGtIrlWdl~~g~---~~~-----~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~~t~~ 273 (842)
|+.+|.|.+|....-. ++. .....-...+.+|..-|..++++|++. +.+||-|.++++||+..+.
T Consensus 83 g~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~ 156 (434)
T KOG1009|consen 83 GGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQ 156 (434)
T ss_pred cCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEeccce
Confidence 9999999999876210 011 011223456789999999999999998 6899999999999997654
|
|
| >KOG1334 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.10 E-value=1.5e-09 Score=118.48 Aligned_cols=272 Identities=17% Similarity=0.201 Sum_probs=172.0
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEe-cccCCcEEEEEEecCC---CEEEeeCCCcEEE
Q 003171 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSW-QAHRGPVLSLCISSYG---DLWSGSEGGGIKI 266 (842)
Q Consensus 191 ~~~V~~la~dpdg~~LaSGs~DGtIrlWdl~~g~~~~~~~~~~~~~l-~gH~~~V~slafs~dG---~L~SgS~DgtIrv 266 (842)
.+-|..|-|...|..|+|||.|..|.+||...+ ...+.+ .||...|.--.|-|.. .|++++.||.||+
T Consensus 142 ~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~--------~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~ 213 (559)
T KOG1334|consen 142 KGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSG--------SPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRV 213 (559)
T ss_pred CCccceeeecccCceeeccCccceEEeehhhcc--------CcccccccccccchhhhhccCCCCCcCceeccccCceee
Confidence 677888999999999999999999999999886 444454 5898888877787753 4899999999999
Q ss_pred EeCCCccc---eeecCCCceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcCCCC-EEEEe-CCCcEEEEEccC
Q 003171 267 WPWEAIEK---ALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRA-KVWSA-GFLSFALWDART 341 (842)
Q Consensus 267 Wd~~t~~~---~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~-~v~s~-s~~tI~lWD~~t 341 (842)
=.+....+ ...+.+ +.+.+..+++.+... .+.++ .+..+.=.|+++
T Consensus 214 s~i~~t~~~e~t~rl~~-----------------------------h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~ 264 (559)
T KOG1334|consen 214 SEILETGYVENTKRLAP-----------------------------HEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQ 264 (559)
T ss_pred eeeccccceecceeccc-----------------------------ccCccceeeecCCCCCcccccccccceeeeeecc
Confidence 76633111 111111 123444555555443 33333 356677778777
Q ss_pred CcEEEEeecCCceEe-eeecccCCCcccccceEEEEEecCCCCccceeeeEeecCc-ceEEecCCcEEEEee--------
Q 003171 342 RELLKVFNIDGQIEN-RVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSR-NAIMGAADAVRRVAA-------- 411 (842)
Q Consensus 342 g~~l~~l~~~~~~~~-~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~-~~~~g~~~~v~~v~~-------- 411 (842)
+.....+.....-.. ++.+. +++..+... ...+|..+-..|+..
T Consensus 265 ~~pa~~~~cr~~~~~~~v~L~--------------------------~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~ 318 (559)
T KOG1334|consen 265 DVPAEKFVCREADEKERVGLY--------------------------TIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEE 318 (559)
T ss_pred CCccceeeeeccCCccceeee--------------------------eEecCCCCccccccCChhhhhhhhcccchhhcc
Confidence 655333321000000 00000 000111000 011111111111111
Q ss_pred -cC---ccc------cCCCceEEEEECCCCc-EEEEeCCCeEEEEcCC---C----------Ceeee-eecCCcc--EEE
Q 003171 412 -KG---GFG------DDNRRTEALTTSIDGM-IWTGGANGLLLQWDPN---G----------NRLQD-FQYLPFA--VQC 464 (842)
Q Consensus 412 -~g---~~~------~~~~~v~al~~s~dg~-l~Sgs~DgtIrlWD~~---g----------~~l~~-l~~H~~~--V~s 464 (842)
.| .|. ...-.|++++++.++. |++.-.|--|.|+..+ | ..++. ++||.+. |..
T Consensus 319 ~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKg 398 (559)
T KOG1334|consen 319 NNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKG 398 (559)
T ss_pred ccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEeccccccCCCCCCCcchhhccchhhcccccccccce
Confidence 00 111 2234678899997665 7666678789999652 4 23333 8898864 667
Q ss_pred EEecC---CEEEEEecCcEEEEEeCC-CcccccccccccCEEEEEeCCC--EEEEEcCCCCeeeccc
Q 003171 465 LCTFG---SQIWVGYMNGIVQVLDLE-GNLLGGWVAHSSPVIKMAVGAG--YIFTLANHGGIRGWNV 525 (842)
Q Consensus 465 ls~dG---~~LasGs~DgtIrlWD~~-g~~i~~l~gH~~~V~sla~dg~--~l~S~S~DgtIrvWd~ 525 (842)
+.+-| .|++|||.-|.|-+|+-. +++++-+.|-...|+||.+.+- .|+|.|-|.-||||--
T Consensus 399 VNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~~MegDr~VVNCLEpHP~~PvLAsSGid~DVKIWTP 465 (559)
T KOG1334|consen 399 VNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIRFMEGDRHVVNCLEPHPHLPVLASSGIDHDVKIWTP 465 (559)
T ss_pred eeeccCccceEEecCccceEEEEecchhHHHHHhhcccceEeccCCCCCCchhhccCCccceeeecC
Confidence 77765 599999999999999987 6889999998889999998765 5889999999999974
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.09 E-value=7.9e-09 Score=115.86 Aligned_cols=266 Identities=16% Similarity=0.161 Sum_probs=164.9
Q ss_pred eeEEEEe--cCCEEEEecCCCEEEEeCCCCccccccccccccCCCCCCCCCCeeeeeecCCCeEEEEEcCCCCEEEEEeC
Q 003171 134 FLRTIVC--TEEQLWAGGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGHR 211 (842)
Q Consensus 134 ~~~~l~~--~~~~l~~~~D~~vrvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~V~~la~dpdg~~LaSGs~ 211 (842)
++..++. ++.+|..+.++.+.+||..++.... +++ .| ...|+|++++.||++.|||+.
T Consensus 14 ci~d~afkPDGsqL~lAAg~rlliyD~ndG~llq-----------------tLK--gH-KDtVycVAys~dGkrFASG~a 73 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAAGSRLLVYDTSDGTLLQ-----------------PLK--GH-KDTVYCVAYAKDGKRFASGSA 73 (1081)
T ss_pred chheeEECCCCceEEEecCCEEEEEeCCCccccc-----------------ccc--cc-cceEEEEEEccCCceeccCCC
Confidence 6666765 5679999999999999987653321 222 23 778999999999999999999
Q ss_pred CCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCCC-EEEeeCCCcEEEEeCCCccceeecCCCceeeeEEEE
Q 003171 212 DGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIV 290 (842)
Q Consensus 212 DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~~t~~~~l~~~~~~~~~~~l~~ 290 (842)
|..+.+|...-. -++. -.|.+.|.||.|.|-.. |+|+|-. -.-+|..+.. .+.-+
T Consensus 74 DK~VI~W~~klE---------G~Lk-YSH~D~IQCMsFNP~~h~LasCsLs-dFglWS~~qK--~V~K~----------- 129 (1081)
T KOG1538|consen 74 DKSVIIWTSKLE---------GILK-YSHNDAIQCMSFNPITHQLASCSLS-DFGLWSPEQK--SVSKH----------- 129 (1081)
T ss_pred ceeEEEeccccc---------ceee-eccCCeeeEeecCchHHHhhhcchh-hccccChhhh--hHHhh-----------
Confidence 999999975431 1222 36999999999999776 7888853 2457877432 11100
Q ss_pred eeceeecccceeccc-eeeeecCCEEEEEEcCCCCEEEEeCCCcEEEEEccCCcEEEEeec---CCceEeeeecccCCCc
Q 003171 291 ERSYIDLRSHLSVNG-FSSILTSDIKNLLSDHSRAKVWSAGFLSFALWDARTRELLKVFNI---DGQIENRVDMSLLPDF 366 (842)
Q Consensus 291 ~~s~~~l~~~~~~~~-~~~~~s~~v~~las~~~~~~v~s~s~~tI~lWD~~tg~~l~~l~~---~~~~~~~~~~s~~~~~ 366 (842)
..... .+...+++..+++.+.. ++||.|-+. +|+.-..... +...+.++.+++....
T Consensus 130 ----------kss~R~~~CsWtnDGqylalG~~--------nGTIsiRNk-~gEek~~I~Rpgg~Nspiwsi~~~p~sg~ 190 (1081)
T KOG1538|consen 130 ----------KSSSRIICCSWTNDGQYLALGMF--------NGTISIRNK-NGEEKVKIERPGGSNSPIWSICWNPSSGE 190 (1081)
T ss_pred ----------hhheeEEEeeecCCCcEEEEecc--------CceEEeecC-CCCcceEEeCCCCCCCCceEEEecCCCCC
Confidence 00111 11223444455554433 356766654 4443222221 2223334444333222
Q ss_pred ccccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEeecCccccCCC----ceEEEEECCCCc-EEEEeCCCe
Q 003171 367 AMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNR----RTEALTTSIDGM-IWTGGANGL 441 (842)
Q Consensus 367 ~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~----~v~al~~s~dg~-l~Sgs~Dgt 441 (842)
..++.+-+..|+. ++.|..- .|++.+... ...++.+=++|. ++.|+.|+.
T Consensus 191 G~~di~aV~DW~q--------TLSFy~L-----------------sG~~Igk~r~L~FdP~CisYf~NGEy~LiGGsdk~ 245 (1081)
T KOG1538|consen 191 GRNDILAVADWGQ--------TLSFYQL-----------------SGKQIGKDRALNFDPCCISYFTNGEYILLGGSDKQ 245 (1081)
T ss_pred CccceEEEEeccc--------eeEEEEe-----------------cceeecccccCCCCchhheeccCCcEEEEccCCCc
Confidence 2222222111211 2333321 233332111 122344446676 889999999
Q ss_pred EEEEcCCCCeeeeeecCCccEEEEE--ecCCEEEEEecCcEEEEEeCC
Q 003171 442 LLQWDPNGNRLQDFQYLPFAVQCLC--TFGSQIWVGYMNGIVQVLDLE 487 (842)
Q Consensus 442 IrlWD~~g~~l~~l~~H~~~V~sls--~dG~~LasGs~DgtIrlWD~~ 487 (842)
++++.-+|-++.++-.-..+|+++. |++++++.|..||||-.+++.
T Consensus 246 L~~fTR~GvrLGTvg~~D~WIWtV~~~PNsQ~v~~GCqDGTiACyNl~ 293 (1081)
T KOG1538|consen 246 LSLFTRDGVRLGTVGEQDSWIWTVQAKPNSQYVVVGCQDGTIACYNLI 293 (1081)
T ss_pred eEEEeecCeEEeeccccceeEEEEEEccCCceEEEEEccCeeehhhhH
Confidence 9999999999998877788999885 689999999999999999964
|
|
| >KOG4227 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.07 E-value=7.3e-09 Score=109.97 Aligned_cols=284 Identities=13% Similarity=0.117 Sum_probs=158.4
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEecc--cCCcEEEEEEecCCC-EEEeeCCCcEEEE
Q 003171 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQA--HRGPVLSLCISSYGD-LWSGSEGGGIKIW 267 (842)
Q Consensus 191 ~~~V~~la~dpdg~~LaSGs~DGtIrlWdl~~g~~~~~~~~~~~~~l~g--H~~~V~slafs~dG~-L~SgS~DgtIrvW 267 (842)
.+-|.++.|+.++++|+||+.|..+++|.++.... ...-+.+ .+++ |+..|.||+|....+ |+||..+++|-+-
T Consensus 56 ~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~--~k~~KPI-~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~VI~H 132 (609)
T KOG4227|consen 56 TGCINALQFSHNDRFLASGGDDMHGRVWNVDELMV--RKTPKPI-GVMEHPHRSNIFSLEFDLENRFLYSGERWGTVIKH 132 (609)
T ss_pred ccccceeeeccCCeEEeecCCcceeeeechHHHHh--hcCCCCc-eeccCccccceEEEEEccCCeeEecCCCcceeEee
Confidence 78899999999999999999999999999875310 0000222 2333 578999999988665 7899999999999
Q ss_pred eCCCccceeecCCCceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcCCCCEEEEeC-CCcEEEEEccCCc-EE
Q 003171 268 PWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRE-LL 345 (842)
Q Consensus 268 d~~t~~~~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s-~~tI~lWD~~tg~-~l 345 (842)
|+++.+....+. +... -++|..+...+.+..+++.+ ++-|.+||.+... .+
T Consensus 133 DiEt~qsi~V~~-~~~~--------------------------~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~ 185 (609)
T KOG4227|consen 133 DIETKQSIYVAN-ENNN--------------------------RGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPI 185 (609)
T ss_pred ecccceeeeeec-ccCc--------------------------ccceeecccCCCCceEEEEecCceEEEEeccCCCCCC
Confidence 998754322111 1000 12344555555555666555 4678899997654 11
Q ss_pred EEe--ecCCceEeeeecccCCCcccccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEeecCccccCCC---
Q 003171 346 KVF--NIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNR--- 420 (842)
Q Consensus 346 ~~l--~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~--- 420 (842)
..+ .-.+....++.|.+... ++..+... ++. ++.|+...++ ..+++ .+.+.+-..
T Consensus 186 ~~~~~AN~~~~F~t~~F~P~~P-------~Li~~~~~-~~G----~~~~D~R~~~-----~~~~~---~~~~~~L~~~~~ 245 (609)
T KOG4227|consen 186 SLVLPANSGKNFYTAEFHPETP-------ALILVNSE-TGG----PNVFDRRMQA-----RPVYQ---RSMFKGLPQENT 245 (609)
T ss_pred ceeeecCCCccceeeeecCCCc-------eeEEeccc-cCC----CCceeecccc-----chHHh---hhccccCcccch
Confidence 111 00011001111111110 11111111 110 1122111000 00000 111111111
Q ss_pred ceEEEEECCCCc-EEEEeCCCeEEEEcCCCCeeeeeec-CC-------ccEEEEEecC-CEEEEEecCcEEEEEeCC---
Q 003171 421 RTEALTTSIDGM-IWTGGANGLLLQWDPNGNRLQDFQY-LP-------FAVQCLCTFG-SQIWVGYMNGIVQVLDLE--- 487 (842)
Q Consensus 421 ~v~al~~s~dg~-l~Sgs~DgtIrlWD~~g~~l~~l~~-H~-------~~V~sls~dG-~~LasGs~DgtIrlWD~~--- 487 (842)
.-..+.|+|.|. +.+--.-..=.++|.-.+++-.|+- |. ..+.++++-| ..|++|+.+-.|.+|-+-
T Consensus 246 ~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~R~~V~k~D~N~~GY~N~~T~KS~~F~~D~~v~tGSD~~~i~~WklP~~~ 325 (609)
T KOG4227|consen 246 EWMGSLWSPSGNQFMSIRRGKCPLYFDFISQRCFVLKSDHNPNGYCNIKTIKSMTFIDDYTVATGSDHWGIHIWKLPRAN 325 (609)
T ss_pred hhhheeeCCCCCeehhhhccCCCEEeeeecccceeEeccCCCCcceeeeeeeeeeeecceeeeccCcccceEEEecCCCc
Confidence 112355777775 4433222334566773322223331 22 2344556644 479999999999999741
Q ss_pred ---C-----c-------------ccccccccccCEEEEEe--CCCEEEEEcCCCCeeecc
Q 003171 488 ---G-----N-------------LLGGWVAHSSPVIKMAV--GAGYIFTLANHGGIRGWN 524 (842)
Q Consensus 488 ---g-----~-------------~i~~l~gH~~~V~sla~--dg~~l~S~S~DgtIrvWd 524 (842)
| . .+.+|+||.+.++.|.+ ....|+|.+-.+.+|+|.
T Consensus 326 ds~G~~~IG~~~~~~~~~~~i~~~~~VLrGHRSv~NQVRF~~H~~~l~SSGVE~~~KlWS 385 (609)
T KOG4227|consen 326 DSYGFTQIGHDEEEMPSEIFIEKELTVLRGHRSVPNQVRFSQHNNLLVSSGVENSFKLWS 385 (609)
T ss_pred cccCccccCcchhhCchhheecceeEEEecccccccceeecCCcceEeccchhhheeccc
Confidence 2 1 24578999999999986 556788999999999997
|
|
| >PRK01742 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.04 E-value=6e-09 Score=119.84 Aligned_cols=207 Identities=11% Similarity=-0.028 Sum_probs=123.8
Q ss_pred CCCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCCC-EEEeeCC---CcEEEEeCCCccceeecCCCceeee
Q 003171 211 RDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEG---GGIKIWPWEAIEKALSLKPEERHTA 286 (842)
Q Consensus 211 ~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~D---gtIrvWd~~t~~~~l~~~~~~~~~~ 286 (842)
.+..|.+||.++. ..+.+..|...|.+.+|||||+ |+.++.+ ..|++||+.+++... +..
T Consensus 182 ~~~~i~i~d~dg~---------~~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~-l~~------ 245 (429)
T PRK01742 182 QPYEVRVADYDGF---------NQFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKV-VAS------ 245 (429)
T ss_pred ceEEEEEECCCCC---------CceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEE-Eec------
Confidence 3578999998774 3456778888999999999998 6665543 479999997653211 000
Q ss_pred EEEEeeceeecccceeccceeeeecCCEEEEEEcCCCCEEEEeC--CCcE--EEEEccCCcEEEEeecCCceEeeeeccc
Q 003171 287 ALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG--FLSF--ALWDARTRELLKVFNIDGQIENRVDMSL 362 (842)
Q Consensus 287 ~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s--~~tI--~lWD~~tg~~l~~l~~~~~~~~~~~~s~ 362 (842)
+.++ ......++++.+|+.+. ++.+ .+||+.+++..+ +..
T Consensus 246 ----------~~g~-------------~~~~~wSPDG~~La~~~~~~g~~~Iy~~d~~~~~~~~-lt~------------ 289 (429)
T PRK01742 246 ----------FRGH-------------NGAPAFSPDGSRLAFASSKDGVLNIYVMGANGGTPSQ-LTS------------ 289 (429)
T ss_pred ----------CCCc-------------cCceeECCCCCEEEEEEecCCcEEEEEEECCCCCeEe-ecc------------
Confidence 0011 11244566666555432 3333 444555544311 110
Q ss_pred CCCcccccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEeecCccccCCCceEEEEECCCCc-EEEEe-CCC
Q 003171 363 LPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGM-IWTGG-ANG 440 (842)
Q Consensus 363 ~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~al~~s~dg~-l~Sgs-~Dg 440 (842)
+...+..+.++|||+ |+.++ .++
T Consensus 290 -------------------------------------------------------~~~~~~~~~wSpDG~~i~f~s~~~g 314 (429)
T PRK01742 290 -------------------------------------------------------GAGNNTEPSWSPDGQSILFTSDRSG 314 (429)
T ss_pred -------------------------------------------------------CCCCcCCEEECCCCCEEEEEECCCC
Confidence 011123456889987 55444 567
Q ss_pred eEEEEcC--CCCeeeeeecCCccEEEEEecCCEEEEEecCcEEEEEeCC-CcccccccccccCEEEEEeCCCEEEEEcCC
Q 003171 441 LLLQWDP--NGNRLQDFQYLPFAVQCLCTFGSQIWVGYMNGIVQVLDLE-GNLLGGWVAHSSPVIKMAVGAGYIFTLANH 517 (842)
Q Consensus 441 tIrlWD~--~g~~l~~l~~H~~~V~sls~dG~~LasGs~DgtIrlWD~~-g~~i~~l~gH~~~V~sla~dg~~l~S~S~D 517 (842)
...+|++ .+...+.+ .+.....++++||++|+.++.++ |.+||+. |+.......+...-.+.++||++++.++.+
T Consensus 315 ~~~I~~~~~~~~~~~~l-~~~~~~~~~SpDG~~ia~~~~~~-i~~~Dl~~g~~~~lt~~~~~~~~~~sPdG~~i~~~s~~ 392 (429)
T PRK01742 315 SPQVYRMSASGGGASLV-GGRGYSAQISADGKTLVMINGDN-VVKQDLTSGSTEVLSSTFLDESPSISPNGIMIIYSSTQ 392 (429)
T ss_pred CceEEEEECCCCCeEEe-cCCCCCccCCCCCCEEEEEcCCC-EEEEECCCCCeEEecCCCCCCCceECCCCCEEEEEEcC
Confidence 8888876 34333333 33332234678999998887765 4559987 543221122222222356799999999999
Q ss_pred CCeeecccc
Q 003171 518 GGIRGWNVT 526 (842)
Q Consensus 518 gtIrvWd~~ 526 (842)
+++++|.+.
T Consensus 393 g~~~~l~~~ 401 (429)
T PRK01742 393 GLGKVLQLV 401 (429)
T ss_pred CCceEEEEE
Confidence 999999864
|
|
| >KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.03 E-value=5.1e-08 Score=115.27 Aligned_cols=111 Identities=20% Similarity=0.211 Sum_probs=92.0
Q ss_pred cCCCceEEEEECCCCc-EEEEeCCCeEEEEcC-CCCeee-eeecCCccEEEEEecCCEEEEEecCcEEEEEeCCCccccc
Q 003171 417 DDNRRTEALTTSIDGM-IWTGGANGLLLQWDP-NGNRLQ-DFQYLPFAVQCLCTFGSQIWVGYMNGIVQVLDLEGNLLGG 493 (842)
Q Consensus 417 ~~~~~v~al~~s~dg~-l~Sgs~DgtIrlWD~-~g~~l~-~l~~H~~~V~sls~dG~~LasGs~DgtIrlWD~~g~~i~~ 493 (842)
+|.+.+-++.++.||. ++|.|+|.++|+|++ +++.+. +.-+|+.+|..+.+...+|++++.|.|.++|+.+++.+.+
T Consensus 173 GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~n~i~t~gedctcrvW~~~~~~l~~ 252 (967)
T KOG0974|consen 173 GHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLPNRIITVGEDCTCRVWGVNGTQLEV 252 (967)
T ss_pred ccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCcccccccceeEEEEeccceeEEeccceEEEEEecccceehh
Confidence 4445555677888887 899999999999999 666655 6678999999888766699999999999999999888889
Q ss_pred cccccc-CEEEEEe--CCCEEEEEcCCCCeeeccccC
Q 003171 494 WVAHSS-PVIKMAV--GAGYIFTLANHGGIRGWNVTS 527 (842)
Q Consensus 494 l~gH~~-~V~sla~--dg~~l~S~S~DgtIrvWd~~~ 527 (842)
+.+|.. .|+.++. +.-.++|++.|+++|+|++..
T Consensus 253 y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~ 289 (967)
T KOG0974|consen 253 YDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLNG 289 (967)
T ss_pred hhhhhhcceeEEEEcCCceEEEeeccCcchhhhhhhc
Confidence 999986 5888874 344677999999999999643
|
|
| >KOG1273 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.03 E-value=8.6e-08 Score=99.94 Aligned_cols=259 Identities=14% Similarity=0.130 Sum_probs=152.3
Q ss_pred CCEEEEe-cCCCEEEEeCCCCccccccccccccCCCCCCCCCCeeeeeecCCCeEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 003171 142 EEQLWAG-GENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGHRDGRIMCWKM 220 (842)
Q Consensus 142 ~~~l~~~-~D~~vrvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~V~~la~dpdg~~LaSGs~DGtIrlWdl 220 (842)
+..|..| .||.|-+||+.+...... +. .| ..||.|+++|+||+.|.|+|.|..|++||+
T Consensus 35 G~~lAvGc~nG~vvI~D~~T~~iar~-----------------ls--aH-~~pi~sl~WS~dgr~LltsS~D~si~lwDl 94 (405)
T KOG1273|consen 35 GDYLAVGCANGRVVIYDFDTFRIARM-----------------LS--AH-VRPITSLCWSRDGRKLLTSSRDWSIKLWDL 94 (405)
T ss_pred cceeeeeccCCcEEEEEccccchhhh-----------------hh--cc-ccceeEEEecCCCCEeeeecCCceeEEEec
Confidence 3344444 599999999987543221 22 23 669999999999999999999999999999
Q ss_pred CCCccCCCCCcceeEEecccCCcEEEEEEecCCC-E-EEeeCCCcEEEEeCCCccc-eeecCCCceeeeEEEEeeceeec
Q 003171 221 NARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-L-WSGSEGGGIKIWPWEAIEK-ALSLKPEERHTAALIVERSYIDL 297 (842)
Q Consensus 221 ~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L-~SgS~DgtIrvWd~~t~~~-~l~~~~~~~~~~~l~~~~s~~~l 297 (842)
..|. +...++ -..+|+...|.|-.+ . +..-.+..--+-++..... .+....+
T Consensus 95 ~~gs--------~l~rir-f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d---------------- 149 (405)
T KOG1273|consen 95 LKGS--------PLKRIR-FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDD---------------- 149 (405)
T ss_pred cCCC--------ceeEEE-ccCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCc----------------
Confidence 9873 222211 257899999988543 2 2222222222222221000 0000000
Q ss_pred ccceeccceeeeecCCEEEEEEcCCCCEEEEeCC-CcEEEEEccCCcEEEEeecCC-ceEeeeecccCCCcccccceEEE
Q 003171 298 RSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGF-LSFALWDARTRELLKVFNIDG-QIENRVDMSLLPDFAMEDEFKTK 375 (842)
Q Consensus 298 ~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s~-~tI~lWD~~tg~~l~~l~~~~-~~~~~~~~s~~~~~~~~~~~~~~ 375 (842)
+.. +..-.+..++..|..+.+|+. +.+.++|+.|-+++..|.... +.
T Consensus 150 ---~dl-------n~sas~~~fdr~g~yIitGtsKGkllv~~a~t~e~vas~rits~~~--------------------- 198 (405)
T KOG1273|consen 150 ---GDL-------NSSASHGVFDRRGKYIITGTSKGKLLVYDAETLECVASFRITSVQA--------------------- 198 (405)
T ss_pred ---ccc-------ccccccccccCCCCEEEEecCcceEEEEecchheeeeeeeechhee---------------------
Confidence 000 000112244566777888876 468999999998877765322 11
Q ss_pred EEecCCCCccceeeeEeecCcceEEecCCcEEEEeec---------Cccc------cCCCce--EEEEECCCCc-EEEE-
Q 003171 376 IVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAK---------GGFG------DDNRRT--EALTTSIDGM-IWTG- 436 (842)
Q Consensus 376 ~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~---------g~~~------~~~~~v--~al~~s~dg~-l~Sg- 436 (842)
+..+-+..+++..++.+.|-+.|.-.. |... .-..+. ..+.||.||. +..|
T Consensus 199 ----------IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~dgeYv~a~s 268 (405)
T KOG1273|consen 199 ----------IKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSGDGEYVCAGS 268 (405)
T ss_pred ----------eeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhheeecCCccEEEecc
Confidence 112344445556677777777766431 1111 001111 2377899997 4333
Q ss_pred eCCCeEEEEcC-CCCeeeeeecCC-ccEEEEEecC--CEEEEEecCcEEEEEeCC
Q 003171 437 GANGLLLQWDP-NGNRLQDFQYLP-FAVQCLCTFG--SQIWVGYMNGIVQVLDLE 487 (842)
Q Consensus 437 s~DgtIrlWD~-~g~~l~~l~~H~-~~V~sls~dG--~~LasGs~DgtIrlWD~~ 487 (842)
+..+.+.+|.- .|.+++.+.|.. .....+..+. ..|++- ..|+|++|...
T Consensus 269 ~~aHaLYIWE~~~GsLVKILhG~kgE~l~DV~whp~rp~i~si-~sg~v~iw~~~ 322 (405)
T KOG1273|consen 269 ARAHALYIWEKSIGSLVKILHGTKGEELLDVNWHPVRPIIASI-ASGVVYIWAVV 322 (405)
T ss_pred ccceeEEEEecCCcceeeeecCCchhheeecccccceeeeeec-cCCceEEEEee
Confidence 34678999999 799999998866 3344554443 234443 67899999853
|
|
| >KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.02 E-value=2.8e-09 Score=114.99 Aligned_cols=199 Identities=19% Similarity=0.205 Sum_probs=124.0
Q ss_pred EEEEEecCCC-EEEeeCCCcEEEEeCCCccceeecCCCceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcCCC
Q 003171 245 LSLCISSYGD-LWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSR 323 (842)
Q Consensus 245 ~slafs~dG~-L~SgS~DgtIrvWd~~t~~~~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~ 323 (842)
..|+|+.+|. |++|+.||++|||++......+... .| ..+|+.+.+++++
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~-------------------~~----------~~eV~DL~FS~dg 198 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEI-------------------AH----------HAEVKDLDFSPDG 198 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhH-------------------hh----------cCccccceeCCCC
Confidence 6789999976 7899999999999986533222111 11 4578899999999
Q ss_pred CEEEEeCCCcEEEEEccCCcEEEEeecCCceEeeeecccCCCcccccceEEEEEecCCCCccceeeeEeecCcceEEecC
Q 003171 324 AKVWSAGFLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAA 403 (842)
Q Consensus 324 ~~v~s~s~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~ 403 (842)
..|++.+....+|||+.+|.++....+....+ .++. ..|..+. +.
T Consensus 199 k~lasig~d~~~VW~~~~g~~~a~~t~~~k~~--------------------~~~~---------cRF~~d~------~~ 243 (398)
T KOG0771|consen 199 KFLASIGADSARVWSVNTGAALARKTPFSKDE--------------------MFSS---------CRFSVDN------AQ 243 (398)
T ss_pred cEEEEecCCceEEEEeccCchhhhcCCcccch--------------------hhhh---------ceecccC------CC
Confidence 88888775699999999997765543211100 0011 1222110 11
Q ss_pred CcEEEEeecCccccCCCceEEEEECCCCcEEEEeCCCeEEEEcCC-CCeeeeeecCCccEEEEE--ecCCEEEEEecCcE
Q 003171 404 DAVRRVAAKGGFGDDNRRTEALTTSIDGMIWTGGANGLLLQWDPN-GNRLQDFQYLPFAVQCLC--TFGSQIWVGYMNGI 480 (842)
Q Consensus 404 ~~v~~v~~~g~~~~~~~~v~al~~s~dg~l~Sgs~DgtIrlWD~~-g~~l~~l~~H~~~V~sls--~dG~~LasGs~Dgt 480 (842)
..+++.+ .. .|.+.+... .+.+|+-. --..++...-.+.|.|++ .||+++|.|+.||.
T Consensus 244 -~~l~laa-------------~~-~~~~~v~~~----~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~dGs 304 (398)
T KOG0771|consen 244 -ETLRLAA-------------SQ-FPGGGVRLC----DISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTMDGS 304 (398)
T ss_pred -ceEEEEE-------------ec-CCCCceeEE----EeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEeccCCc
Confidence 1111110 00 111212111 23344442 111222222234677765 58999999999999
Q ss_pred EEEEeCCC-cc-cccccccccCEEEEE--eCCCEEEEEcCCCCeeecccc
Q 003171 481 VQVLDLEG-NL-LGGWVAHSSPVIKMA--VGAGYIFTLANHGGIRGWNVT 526 (842)
Q Consensus 481 IrlWD~~g-~~-i~~l~gH~~~V~sla--~dg~~l~S~S~DgtIrvWd~~ 526 (842)
|-|++... ++ ...-.+|...|+.|. +|.+++++.|.|.++.+-.+.
T Consensus 305 Vai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~ 354 (398)
T KOG0771|consen 305 VAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLA 354 (398)
T ss_pred EEEEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCCceeEEEEe
Confidence 99999873 43 445579999999998 578899999999998887653
|
|
| >KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown] | Back alignment and domain information |
|---|
Probab=99.01 E-value=1.5e-08 Score=104.51 Aligned_cols=112 Identities=13% Similarity=0.076 Sum_probs=84.0
Q ss_pred ccCCCceEEEEECCCCc--EEEEeCCCeEEEEcCCCCeeeee--ec--CCccEEEEEe---cCCEEEEEec-CcEEEEEe
Q 003171 416 GDDNRRTEALTTSIDGM--IWTGGANGLLLQWDPNGNRLQDF--QY--LPFAVQCLCT---FGSQIWVGYM-NGIVQVLD 485 (842)
Q Consensus 416 ~~~~~~v~al~~s~dg~--l~Sgs~DgtIrlWD~~g~~l~~l--~~--H~~~V~sls~---dG~~LasGs~-DgtIrlWD 485 (842)
..|.+.|..++|+.++. ++|.+.||+||++|+....-.++ +. ...+..-++. |..++|+=.. ...|.+.|
T Consensus 193 IAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLD 272 (364)
T KOG0290|consen 193 IAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILD 272 (364)
T ss_pred EecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEE
Confidence 34556677788887665 78999999999999954322222 22 1345555654 5567776554 46899999
Q ss_pred CC--CcccccccccccCEEEEEe---CCCEEEEEcCCCCeeeccccC
Q 003171 486 LE--GNLLGGWVAHSSPVIKMAV---GAGYIFTLANHGGIRGWNVTS 527 (842)
Q Consensus 486 ~~--g~~i~~l~gH~~~V~sla~---dg~~l~S~S~DgtIrvWd~~~ 527 (842)
++ ...+..|.+|.+.|++|++ .+..|.|+|.|..+-+||+..
T Consensus 273 iR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q 319 (364)
T KOG0290|consen 273 IRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQ 319 (364)
T ss_pred ecCCCcceehhhcCcccccceEecCCCCceeeecCCcceEEEEeccc
Confidence 87 6789999999999999985 567899999999999999864
|
|
| >PRK11028 6-phosphogluconolactonase; Provisional | Back alignment and domain information |
|---|
Probab=99.00 E-value=1.2e-07 Score=104.97 Aligned_cols=242 Identities=10% Similarity=0.109 Sum_probs=135.2
Q ss_pred cCCEEEEe--cCCCEEEEeCCCCccccccccccccCCCCCCCCCCeeeeeecCCCeEEEEEcCCCCEEEEEeC-CCcEEE
Q 003171 141 TEEQLWAG--GENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGHR-DGRIMC 217 (842)
Q Consensus 141 ~~~~l~~~--~D~~vrvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~V~~la~dpdg~~LaSGs~-DGtIrl 217 (842)
+++.||++ .++.|.+|+++....... ....+ . .+....++++|++++|++++. ++.|.+
T Consensus 45 d~~~lyv~~~~~~~i~~~~~~~~g~l~~------------~~~~~-----~-~~~p~~i~~~~~g~~l~v~~~~~~~v~v 106 (330)
T PRK11028 45 DKRHLYVGVRPEFRVLSYRIADDGALTF------------AAESP-----L-PGSPTHISTDHQGRFLFSASYNANCVSV 106 (330)
T ss_pred CCCEEEEEECCCCcEEEEEECCCCceEE------------eeeec-----C-CCCceEEEECCCCCEEEEEEcCCCeEEE
Confidence 45577775 368999999862110000 00000 1 223567999999999998875 789999
Q ss_pred EECCCCccCCCCCcceeEEecccCCcEEEEEEecCCC-E-EEeeCCCcEEEEeCCCccceeecCCCceeeeEEEEeecee
Q 003171 218 WKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-L-WSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYI 295 (842)
Q Consensus 218 Wdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L-~SgS~DgtIrvWd~~t~~~~l~~~~~~~~~~~l~~~~s~~ 295 (842)
|++++.. ........+.++ ....+++|+|+|+ | ++...++.|++||+++... +... .......
T Consensus 107 ~~~~~~g----~~~~~~~~~~~~-~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~-l~~~--~~~~~~~------- 171 (330)
T PRK11028 107 SPLDKDG----IPVAPIQIIEGL-EGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGH-LVAQ--EPAEVTT------- 171 (330)
T ss_pred EEECCCC----CCCCceeeccCC-CcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCc-cccc--CCCceec-------
Confidence 9997420 001122222332 3457789999998 5 4666789999999965221 1100 0000000
Q ss_pred ecccceeccceeeeecCCEEEEEEcCCCCEEEEeC--CCcEEEEEccC--CcEEEEeecCCceEeeeecccCCCcccccc
Q 003171 296 DLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG--FLSFALWDART--RELLKVFNIDGQIENRVDMSLLPDFAMEDE 371 (842)
Q Consensus 296 ~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s--~~tI~lWD~~t--g~~l~~l~~~~~~~~~~~~s~~~~~~~~~~ 371 (842)
.. ....+.+++++++..++++. +++|.+||+.. ++. .....
T Consensus 172 ------~~-------g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~-~~~~~--------------------- 216 (330)
T PRK11028 172 ------VE-------GAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEI-ECVQT--------------------- 216 (330)
T ss_pred ------CC-------CCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCE-EEEEE---------------------
Confidence 00 11234567778888887765 46899999863 332 11100
Q ss_pred eEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEeecCccccCCCceEEEEECCCCc-EEEEe-CCCeEEEEcC-C
Q 003171 372 FKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGM-IWTGG-ANGLLLQWDP-N 448 (842)
Q Consensus 372 ~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~al~~s~dg~-l~Sgs-~DgtIrlWD~-~ 448 (842)
+... .. .+. .......+.++|||+ ++++. .+++|.+|++ .
T Consensus 217 -----~~~~-p~------------------------------~~~-~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~ 259 (330)
T PRK11028 217 -----LDMM-PA------------------------------DFS-DTRWAADIHITPDGRHLYACDRTASLISVFSVSE 259 (330)
T ss_pred -----EecC-CC------------------------------cCC-CCccceeEEECCCCCEEEEecCCCCeEEEEEEeC
Confidence 0000 00 000 001123467889987 66664 4789999998 2
Q ss_pred -CCe---eeeeecCC-ccEEEEEecCCEEEEEec-CcEEEEEeCC
Q 003171 449 -GNR---LQDFQYLP-FAVQCLCTFGSQIWVGYM-NGIVQVLDLE 487 (842)
Q Consensus 449 -g~~---l~~l~~H~-~~V~sls~dG~~LasGs~-DgtIrlWD~~ 487 (842)
+.. ++...... -+-..+.+||++|+++.. +++|.+|+++
T Consensus 260 ~~~~~~~~~~~~~~~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~ 304 (330)
T PRK11028 260 DGSVLSFEGHQPTETQPRGFNIDHSGKYLIAAGQKSHHISVYEID 304 (330)
T ss_pred CCCeEEEeEEEeccccCCceEECCCCCEEEEEEccCCcEEEEEEc
Confidence 322 22222111 111245678999998775 8999999864
|
|
| >KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.98 E-value=2.4e-09 Score=119.36 Aligned_cols=111 Identities=14% Similarity=0.229 Sum_probs=85.2
Q ss_pred cCCEEEE-ecCCCEEEEeCCCCccccccccccccCCCCCCCCCCee-eeeecCCCeEEEEEcC-CCCEEEEEeCCCcEEE
Q 003171 141 TEEQLWA-GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFK-ESVKGVSSVMCMVGDE-ASGVVWSGHRDGRIMC 217 (842)
Q Consensus 141 ~~~~l~~-~~D~~vrvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~~~V~~la~dp-dg~~LaSGs~DGtIrl 217 (842)
+..+|-. +.|+.|++|-+...-... ....|-. -.+| ...|+++.|.| ....|+++++|-||++
T Consensus 639 D~~rLAVa~ddg~i~lWr~~a~gl~e-------------~~~tPe~~lt~h-~eKI~slRfHPLAadvLa~asyd~Ti~l 704 (1012)
T KOG1445|consen 639 DDERLAVATDDGQINLWRLTANGLPE-------------NEMTPEKILTIH-GEKITSLRFHPLAADVLAVASYDSTIEL 704 (1012)
T ss_pred ChHHeeecccCceEEEEEeccCCCCc-------------ccCCcceeeecc-cceEEEEEecchhhhHhhhhhccceeee
Confidence 3445554 568899999985321110 1111211 1233 66899999998 5589999999999999
Q ss_pred EECCCCccCCCCCcceeEEecccCCcEEEEEEecCCC-EEEeeCCCcEEEEeCCCcc
Q 003171 218 WKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIE 273 (842)
Q Consensus 218 Wdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~~t~~ 273 (842)
||+.++ .....|.||++.|.+++|||||+ ++|.+.||+|||++....+
T Consensus 705 WDl~~~--------~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e 753 (1012)
T KOG1445|consen 705 WDLANA--------KLYSRLVGHTDQIFGIAWSPDGRRIATVCKDGTLRVYEPRSRE 753 (1012)
T ss_pred eehhhh--------hhhheeccCcCceeEEEECCCCcceeeeecCceEEEeCCCCCC
Confidence 999997 66778999999999999999998 7899999999999987644
|
|
| >PRK03629 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.96 E-value=9.4e-08 Score=109.92 Aligned_cols=211 Identities=10% Similarity=0.021 Sum_probs=121.6
Q ss_pred CCCeEEEEEcCCCCEEEEEeC---CCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCCC-EE-EeeCCC--c
Q 003171 191 VSSVMCMVGDEASGVVWSGHR---DGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LW-SGSEGG--G 263 (842)
Q Consensus 191 ~~~V~~la~dpdg~~LaSGs~---DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~-SgS~Dg--t 263 (842)
...+.+.+|+|||+.|+..+. +..|.+|++.++. .+.+..+.+| +.+++|||||+ |+ +.+.++ .
T Consensus 198 ~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~------~~~l~~~~~~---~~~~~~SPDG~~La~~~~~~g~~~ 268 (429)
T PRK03629 198 PQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGA------VRQVASFPRH---NGAPAFSPDGSKLAFALSKTGSLN 268 (429)
T ss_pred CCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCC------eEEccCCCCC---cCCeEECCCCCEEEEEEcCCCCcE
Confidence 457899999999998886553 3468899998862 0122223444 45689999998 54 555555 4
Q ss_pred EEEEeCCCccceeecCCCceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcCCCCEEEEeCC--Cc--EEEEEc
Q 003171 264 IKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGF--LS--FALWDA 339 (842)
Q Consensus 264 IrvWd~~t~~~~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s~--~t--I~lWD~ 339 (842)
|.+||+++++.. .+... .........++++..|+..++ +. |.++|+
T Consensus 269 I~~~d~~tg~~~-~lt~~-----------------------------~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~ 318 (429)
T PRK03629 269 LYVMDLASGQIR-QVTDG-----------------------------RSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNI 318 (429)
T ss_pred EEEEECCCCCEE-EccCC-----------------------------CCCcCceEECCCCCEEEEEeCCCCCceEEEEEC
Confidence 888888664321 11110 001122344555555544332 22 333344
Q ss_pred cCCcEEEEeecCCceEeeeecccCCCcccccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEeecCccccCC
Q 003171 340 RTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDN 419 (842)
Q Consensus 340 ~tg~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~ 419 (842)
.+++... +.. ..
T Consensus 319 ~~g~~~~-lt~-------------------------------------------------------------------~~ 330 (429)
T PRK03629 319 NGGAPQR-ITW-------------------------------------------------------------------EG 330 (429)
T ss_pred CCCCeEE-eec-------------------------------------------------------------------CC
Confidence 4443211 100 00
Q ss_pred CceEEEEECCCCc-EEEEeCC---CeEEEEcCCCCeeeeeec-CCccEEEEEecCCEEEEEecCcE---EEEEeCCCccc
Q 003171 420 RRTEALTTSIDGM-IWTGGAN---GLLLQWDPNGNRLQDFQY-LPFAVQCLCTFGSQIWVGYMNGI---VQVLDLEGNLL 491 (842)
Q Consensus 420 ~~v~al~~s~dg~-l~Sgs~D---gtIrlWD~~g~~l~~l~~-H~~~V~sls~dG~~LasGs~Dgt---IrlWD~~g~~i 491 (842)
.......++|||+ |+..+.+ ..|.+||+.+...+.+.. +...--++++||++|+.++.++. +.+|+++|+..
T Consensus 331 ~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~~Lt~~~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~~G~~~ 410 (429)
T PRK03629 331 SQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQVLTDTFLDETPSIAPNGTMVIYSSSQGMGSVLNLVSTDGRFK 410 (429)
T ss_pred CCccCEEECCCCCEEEEEEccCCCceEEEEECCCCCeEEeCCCCCCCCceECCCCCEEEEEEcCCCceEEEEEECCCCCe
Confidence 0112345778886 5444432 358899994333344432 21222356789999998887664 78888988888
Q ss_pred ccccccccCEEEEEeCC
Q 003171 492 GGWVAHSSPVIKMAVGA 508 (842)
Q Consensus 492 ~~l~gH~~~V~sla~dg 508 (842)
+.+.+|.+.+...++.+
T Consensus 411 ~~l~~~~~~~~~p~Wsp 427 (429)
T PRK03629 411 ARLPATDGQVKFPAWSP 427 (429)
T ss_pred EECccCCCCcCCcccCC
Confidence 88888888777665543
|
|
| >KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.93 E-value=5.8e-08 Score=107.06 Aligned_cols=200 Identities=18% Similarity=0.214 Sum_probs=124.3
Q ss_pred CCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCCC-EEEeeCCCcEEEEeCCCccceeecCCC
Q 003171 203 SGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEKALSLKPE 281 (842)
Q Consensus 203 g~~LaSGs~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~~t~~~~l~~~~~ 281 (842)
...++..+.||.+.+-+-.+ +-.....+|.++|.+-.++|||. |+|+++||.||+|...+...+.
T Consensus 75 ~d~~~i~s~DGkf~il~k~~---------rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrsGMLRSt----- 140 (737)
T KOG1524|consen 75 SDTLLICSNDGRFVILNKSA---------RVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSRSGMLRST----- 140 (737)
T ss_pred cceEEEEcCCceEEEecccc---------hhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEeccchHHHH-----
Confidence 35688889999998877554 33456789999999999999998 9999999999999975421110
Q ss_pred ceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcCCCCE-EEEeCCCcEEEEEccCCcEEEEeecCCceEeeeec
Q 003171 282 ERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAK-VWSAGFLSFALWDARTRELLKVFNIDGQIENRVDM 360 (842)
Q Consensus 282 ~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~-v~s~s~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~ 360 (842)
.... ...+.|++-+++... |+|.++ .+. ++-|.+...
T Consensus 141 -------------------l~Q~------~~~v~c~~W~p~S~~vl~c~g~-h~~---------IKpL~~n~k------- 178 (737)
T KOG1524|consen 141 -------------------VVQN------EESIRCARWAPNSNSIVFCQGG-HIS---------IKPLAANSK------- 178 (737)
T ss_pred -------------------Hhhc------CceeEEEEECCCCCceEEecCC-eEE---------Eeecccccc-------
Confidence 0000 224566665554332 222221 111 111111110
Q ss_pred ccCCCcccccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEeecCccccCCCceEEEEECCCCc-EEEEeCC
Q 003171 361 SLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGM-IWTGGAN 439 (842)
Q Consensus 361 s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~al~~s~dg~-l~Sgs~D 439 (842)
+.+ +..|.+-|.++.+++... ++||++|
T Consensus 179 ---------------------------------------------~i~------WkAHDGiiL~~~W~~~s~lI~sgGED 207 (737)
T KOG1524|consen 179 ---------------------------------------------IIR------WRAHDGLVLSLSWSTQSNIIASGGED 207 (737)
T ss_pred ---------------------------------------------eeE------EeccCcEEEEeecCccccceeecCCc
Confidence 001 123444455666776655 7899999
Q ss_pred CeEEEEcCCCCeeeeeecCCccEEEEEecCC-EEEEEecCcEEEEEeCCCcccccccccccCEEEEE--eCCCEEEEEcC
Q 003171 440 GLLLQWDPNGNRLQDFQYLPFAVQCLCTFGS-QIWVGYMNGIVQVLDLEGNLLGGWVAHSSPVIKMA--VGAGYIFTLAN 516 (842)
Q Consensus 440 gtIrlWD~~g~~l~~l~~H~~~V~sls~dG~-~LasGs~DgtIrlWD~~g~~i~~l~gH~~~V~sla--~dg~~l~S~S~ 516 (842)
-..|+||.-|..+-+-..|..+|+++++... ..+.|| -.++|+=. ...+.|..++ +||++++.|..
T Consensus 208 ~kfKvWD~~G~~Lf~S~~~ey~ITSva~npd~~~~v~S-~nt~R~~~----------p~~GSifnlsWS~DGTQ~a~gt~ 276 (737)
T KOG1524|consen 208 FRFKIWDAQGANLFTSAAEEYAITSVAFNPEKDYLLWS-YNTARFSS----------PRVGSIFNLSWSADGTQATCGTS 276 (737)
T ss_pred eeEEeecccCcccccCChhccceeeeeeccccceeeee-eeeeeecC----------CCccceEEEEEcCCCceeecccc
Confidence 9999999999999888899999999987544 444444 44555211 1234555555 36666665555
Q ss_pred CCCe
Q 003171 517 HGGI 520 (842)
Q Consensus 517 DgtI 520 (842)
.|.+
T Consensus 277 ~G~v 280 (737)
T KOG1524|consen 277 TGQL 280 (737)
T ss_pred CceE
Confidence 5544
|
|
| >KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.89 E-value=2.7e-08 Score=101.45 Aligned_cols=257 Identities=15% Similarity=0.152 Sum_probs=139.6
Q ss_pred eeEEecccCCcEEEEEEecCCCEEEeeCCCcEEEEeCCCccceeecCCCceeeeEEEEeeceeecccceeccceeeeecC
Q 003171 233 EVLSWQAHRGPVLSLCISSYGDLWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTS 312 (842)
Q Consensus 233 ~~~~l~gH~~~V~slafs~dG~L~SgS~DgtIrvWd~~t~~~~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~ 312 (842)
....|++|.+.|+++.|..+++|++|..-|.|++|++++......+ ++++ ..
T Consensus 6 P~fvLRp~~~~v~s~~fqa~~rL~sg~~~G~V~~w~lqt~r~~~~~-------------------r~~g---------~~ 57 (323)
T KOG0322|consen 6 PFFVLRPHSSSVTSVLFQANERLMSGLSVGIVKMWVLQTERDLPLI-------------------RLFG---------RL 57 (323)
T ss_pred CeeEeccccchheehhhccchhhhcccccceEEEEEeecCccchhh-------------------hhhc---------cc
Confidence 3456789999999999999999999999999999999774321111 1010 01
Q ss_pred CEEEEEEcCCCCEEEEeCCCcEEEEEccCCcEEEEeecCCceEeeeecccCCCcccccceEEEEEecCCCCccceeeeEe
Q 003171 313 DIKNLLSDHSRAKVWSAGFLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFF 392 (842)
Q Consensus 313 ~v~~las~~~~~~v~s~s~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~ 392 (842)
.+..+-.-+++..+.-+.|..+.+|++.-+..+..-+ -..|++.|-.. + +.... +...-..+.
T Consensus 58 ~it~lq~~p~d~l~tqgRd~~L~lw~ia~s~~i~i~S---i~~nslgFCrf---S--------l~~~~---k~~eqll~y 120 (323)
T KOG0322|consen 58 FITNLQSIPNDSLDTQGRDPLLILWTIAYSAFISIHS---IVVNSLGFCRF---S--------LVKKP---KNSEQLLEY 120 (323)
T ss_pred eeeceeecCCcchhhcCCCceEEEEEccCcceEEEee---eeccccccccc---e--------eccCC---Ccchhheec
Confidence 1222333333333333446678899988766654422 11122222110 0 00000 000000011
Q ss_pred ecCc----ceEEecCCcEEEEeecCccccCCCceEEEEEC-CCC-c--EEEEeCCCeEEEEcC-CCCe----------ee
Q 003171 393 QRSR----NAIMGAADAVRRVAAKGGFGDDNRRTEALTTS-IDG-M--IWTGGANGLLLQWDP-NGNR----------LQ 453 (842)
Q Consensus 393 ~~~~----~~~~g~~~~v~~v~~~g~~~~~~~~v~al~~s-~dg-~--l~Sgs~DgtIrlWD~-~g~~----------l~ 453 (842)
+... +..-+....-.++... .-....+.+.+.... .++ + ++.|-++|.+.+||+ ++.. ..
T Consensus 121 p~rgsde~h~~D~g~~tqv~i~dd-~~~~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~ 199 (323)
T KOG0322|consen 121 PSRGSDETHKQDGGDTTQVQIADD-SERSKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVES 199 (323)
T ss_pred CCcccchhhhhccCccceeEccCc-hhccccCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeecccccccccc
Confidence 1000 0000000000111100 000111222222211 122 2 567889999999999 5632 22
Q ss_pred eeecCCccEEEEEecC--CEEEEEecCcEEEEEeCC---Ccc-cc-cccccccCEEE--EEeCCCEEEEEcCCCCeeecc
Q 003171 454 DFQYLPFAVQCLCTFG--SQIWVGYMNGIVQVLDLE---GNL-LG-GWVAHSSPVIK--MAVGAGYIFTLANHGGIRGWN 524 (842)
Q Consensus 454 ~l~~H~~~V~sls~dG--~~LasGs~DgtIrlWD~~---g~~-i~-~l~gH~~~V~s--la~dg~~l~S~S~DgtIrvWd 524 (842)
....|..+|+++.++. .+=++|+.+..+..|.++ |.+ ++ ...--.-.|.. |.+|++.++|+|+|+.||++.
T Consensus 200 ~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~gslq~~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVys 279 (323)
T KOG0322|consen 200 PNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTGSLQIRKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYS 279 (323)
T ss_pred chhhccCcceeeeechhhcCCcCCCccccceeeeeccccCcccccceEEecCCCccceEEccCCcEEeecccCCcEEEEE
Confidence 3346899999997753 356788888889999875 332 22 22222334554 458999999999999999999
Q ss_pred ccCCCCCcchh
Q 003171 525 VTSPGPLDSIL 535 (842)
Q Consensus 525 ~~~~~~~d~~l 535 (842)
.++-.|+.-+.
T Consensus 280 wrtl~pLAVLk 290 (323)
T KOG0322|consen 280 WRTLNPLAVLK 290 (323)
T ss_pred eccCCchhhhh
Confidence 98877766443
|
|
| >KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.88 E-value=1.9e-07 Score=111.83 Aligned_cols=165 Identities=18% Similarity=0.199 Sum_probs=102.0
Q ss_pred EEEE--ecCCCEEEEeCCCCccccccccccccCCCCCCCCCCeeeeeecCCCeEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 003171 144 QLWA--GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGHRDGRIMCWKMN 221 (842)
Q Consensus 144 ~l~~--~~D~~vrvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~V~~la~dpdg~~LaSGs~DGtIrlWdl~ 221 (842)
.+++ |.||+||+||+.+....+. ..|. -.+++.. .+.+.++..-+.+..+|.|+.||.|++-+++
T Consensus 1062 s~FvsgS~DGtVKvW~~~k~~~~~~------s~rS------~ltys~~-~sr~~~vt~~~~~~~~Av~t~DG~v~~~~id 1128 (1431)
T KOG1240|consen 1062 SLFVSGSDDGTVKVWNLRKLEGEGG------SARS------ELTYSPE-GSRVEKVTMCGNGDQFAVSTKDGSVRVLRID 1128 (1431)
T ss_pred ceEEEecCCceEEEeeehhhhcCcc------eeee------eEEEecc-CCceEEEEeccCCCeEEEEcCCCeEEEEEcc
Confidence 5665 5699999999976433211 0111 1223323 6789999999999999999999999999887
Q ss_pred CCccCCCCCcceeEEeccc-CCcEEEE-EEecCC-C--EEEeeCCCcEEEEeCCCccceeecCCCceeeeEEEEeeceee
Q 003171 222 ARLLDSDDGFGEVLSWQAH-RGPVLSL-CISSYG-D--LWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYID 296 (842)
Q Consensus 222 ~g~~~~~~~~~~~~~l~gH-~~~V~sl-afs~dG-~--L~SgS~DgtIrvWd~~t~~~~l~~~~~~~~~~~l~~~~s~~~ 296 (842)
.-... .....+.+....| .+.|.+| +|.... . |+-+..-+.|-.||+.......++.....
T Consensus 1129 ~~~~~-~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~------------- 1194 (1431)
T KOG1240|consen 1129 HYNVS-KRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLR------------- 1194 (1431)
T ss_pred ccccc-cceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCcc-------------
Confidence 62100 0001111222233 3445444 454432 2 56777788899999866433333222111
Q ss_pred cccceeccceeeeecCCEEEEEEcCCCCEEEEeCC-CcEEEEEccCCcEEEEee
Q 003171 297 LRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGF-LSFALWDARTRELLKVFN 349 (842)
Q Consensus 297 l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s~-~tI~lWD~~tg~~l~~l~ 349 (842)
++-+..++.++.+..+..|+. +.+.+||++=+.++....
T Consensus 1195 --------------hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~ 1234 (1431)
T KOG1240|consen 1195 --------------HGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWE 1234 (1431)
T ss_pred --------------ccceeEEEecCCceEEEEecCCceEEEEEeecCceeeccc
Confidence 345677888888887777775 568899999888776654
|
|
| >PRK04922 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.83 E-value=3.6e-07 Score=105.29 Aligned_cols=73 Identities=12% Similarity=-0.001 Sum_probs=53.9
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCC---cEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCCC-E-EEeeCCC--c
Q 003171 191 VSSVMCMVGDEASGVVWSGHRDG---RIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-L-WSGSEGG--G 263 (842)
Q Consensus 191 ~~~V~~la~dpdg~~LaSGs~DG---tIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L-~SgS~Dg--t 263 (842)
..++.+.+++|||+.|+..+.++ .|.+|++.++. ...+..+.+.+.+++|+|||+ | ++.+.++ .
T Consensus 203 ~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~---------~~~l~~~~g~~~~~~~SpDG~~l~~~~s~~g~~~ 273 (433)
T PRK04922 203 AEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQ---------RELVASFRGINGAPSFSPDGRRLALTLSRDGNPE 273 (433)
T ss_pred CCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCC---------EEEeccCCCCccCceECCCCCEEEEEEeCCCCce
Confidence 45788999999999999887543 69999998862 233344455566789999997 5 4666666 5
Q ss_pred EEEEeCCCc
Q 003171 264 IKIWPWEAI 272 (842)
Q Consensus 264 IrvWd~~t~ 272 (842)
|.+||+.++
T Consensus 274 Iy~~d~~~g 282 (433)
T PRK04922 274 IYVMDLGSR 282 (433)
T ss_pred EEEEECCCC
Confidence 888898764
|
|
| >KOG1310 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.79 E-value=1e-08 Score=113.06 Aligned_cols=130 Identities=18% Similarity=0.362 Sum_probs=107.9
Q ss_pred EEecCCcEEEEeecCccccCCCceEEEEECCCCc-EEEEeCCCeEEEEcC-CCCeeeee-ecCCccEEEEEe----cCCE
Q 003171 399 IMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGM-IWTGGANGLLLQWDP-NGNRLQDF-QYLPFAVQCLCT----FGSQ 471 (842)
Q Consensus 399 ~~g~~~~v~~v~~~g~~~~~~~~v~al~~s~dg~-l~Sgs~DgtIrlWD~-~g~~l~~l-~~H~~~V~sls~----dG~~ 471 (842)
.+++...++++.....+.+|.++|.+|.++.||. |+|||.|-.+.+||. .-+.+..+ +||..-|-|+.+ ..+.
T Consensus 30 y~~~s~~lrrL~lE~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnri 109 (758)
T KOG1310|consen 30 YMGNSTWLRRLDLEAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRI 109 (758)
T ss_pred hccccHHHhhcchhhhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeE
Confidence 4455556677776778999999999999999998 789999999999999 67776655 589999999865 3458
Q ss_pred EEEEecCcEEEEEeCCC-----------cccccccccccCEEEEEe--C-CCEEEEEcCCCCeeeccccCC
Q 003171 472 IWVGYMNGIVQVLDLEG-----------NLLGGWVAHSSPVIKMAV--G-AGYIFTLANHGGIRGWNVTSP 528 (842)
Q Consensus 472 LasGs~DgtIrlWD~~g-----------~~i~~l~gH~~~V~sla~--d-g~~l~S~S~DgtIrvWd~~~~ 528 (842)
+++|+.|.-|+|+|+.. ..++-|..|++.|..|+. + +..++|+|.||+||-.|++.|
T Consensus 110 v~sgAgDk~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREp 180 (758)
T KOG1310|consen 110 VLSGAGDKLIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREP 180 (758)
T ss_pred EEeccCcceEEEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCC
Confidence 88999999999999751 246788999999999884 3 467899999999999998764
|
|
| >KOG1188 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.78 E-value=1.3e-07 Score=99.86 Aligned_cols=96 Identities=15% Similarity=0.224 Sum_probs=74.1
Q ss_pred EEEEeCCCeEEEEcCC--CC-eeeeeecCC-ccEEEEEe--cCCEEEEEec----CcEEEEEeCC--Ccccccc-ccccc
Q 003171 433 IWTGGANGLLLQWDPN--GN-RLQDFQYLP-FAVQCLCT--FGSQIWVGYM----NGIVQVLDLE--GNLLGGW-VAHSS 499 (842)
Q Consensus 433 l~Sgs~DgtIrlWD~~--g~-~l~~l~~H~-~~V~sls~--dG~~LasGs~----DgtIrlWD~~--g~~i~~l-~gH~~ 499 (842)
+.||+.||+||+||+. ++ ....+++|+ .+-.|+.. .+..++.|+. +-.|.+||++ .++++.+ ..|.+
T Consensus 87 v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~D 166 (376)
T KOG1188|consen 87 VISCSSDGTVRLWDIRSQAESARISWTQQSGTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHND 166 (376)
T ss_pred eEEeccCCeEEEEEeecchhhhheeccCCCCCcceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccC
Confidence 7899999999999993 33 334455666 45556655 4567888773 7789999986 3446655 68999
Q ss_pred CEEEEEe---CCCEEEEEcCCCCeeeccccCC
Q 003171 500 PVIKMAV---GAGYIFTLANHGGIRGWNVTSP 528 (842)
Q Consensus 500 ~V~sla~---dg~~l~S~S~DgtIrvWd~~~~ 528 (842)
-|++|.+ +++.|+|||.||-|.++|+...
T Consensus 167 DVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d 198 (376)
T KOG1188|consen 167 DVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKD 198 (376)
T ss_pred cceeEEecCCCCCeEEeecccceEEeeecCCC
Confidence 9999985 6789999999999999998765
|
|
| >KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.78 E-value=1.6e-07 Score=111.21 Aligned_cols=148 Identities=21% Similarity=0.266 Sum_probs=109.1
Q ss_pred EEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCCC-EEEeeCCCcEEEEeCCCcccee
Q 003171 198 VGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEKAL 276 (842)
Q Consensus 198 a~dpdg~~LaSGs~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~~t~~~~l 276 (842)
..+++-=++++|+.-+.|.+|+.... +.-..+.||.+.|.++.++.||+ ++|.|+|.++|+|++++.+..
T Consensus 140 g~s~~~~~i~~gsv~~~iivW~~~~d--------n~p~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~- 210 (967)
T KOG0974|consen 140 GDSAEELYIASGSVFGEIIVWKPHED--------NKPIRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVL- 210 (967)
T ss_pred eccCcEEEEEeccccccEEEEecccc--------CCcceecccCCceEEEEEccCCcEEEEEecCcceeeeeccccccc-
Confidence 34555568999999999999998743 12225889999999999999998 799999999999999663210
Q ss_pred ecCCCceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcCCCCEEEEeCCCcEEEEEccCCcEEEEeecCCceEe
Q 003171 277 SLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGFLSFALWDARTRELLKVFNIDGQIEN 356 (842)
Q Consensus 277 ~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s~~tI~lWD~~tg~~l~~l~~~~~~~~ 356 (842)
.++.++
T Consensus 211 --------------------------------------~~~~fg------------------------------------ 216 (967)
T KOG0974|consen 211 --------------------------------------GCTGFG------------------------------------ 216 (967)
T ss_pred --------------------------------------Cccccc------------------------------------
Confidence 011111
Q ss_pred eeecccCCCcccccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEeecCccccCCCceEEEEECCCCcEEEE
Q 003171 357 RVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGMIWTG 436 (842)
Q Consensus 357 ~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~al~~s~dg~l~Sg 436 (842)
|..+|..+.+.|+ .++|+
T Consensus 217 -------------------------------------------------------------HsaRvw~~~~~~n-~i~t~ 234 (967)
T KOG0974|consen 217 -------------------------------------------------------------HSARVWACCFLPN-RIITV 234 (967)
T ss_pred -------------------------------------------------------------ccceeEEEEeccc-eeEEe
Confidence 1222223344455 78899
Q ss_pred eCCCeEEEEcCCCCeeeeeecCCc-cEEEEEe-cCC-EEEEEecCcEEEEEeCCCcc
Q 003171 437 GANGLLLQWDPNGNRLQDFQYLPF-AVQCLCT-FGS-QIWVGYMNGIVQVLDLEGNL 490 (842)
Q Consensus 437 s~DgtIrlWD~~g~~l~~l~~H~~-~V~sls~-dG~-~LasGs~DgtIrlWD~~g~~ 490 (842)
+.|.|.++|+.++..+.++.+|.. .|..+.. .+. .+++++.|++|++||+.+..
T Consensus 235 gedctcrvW~~~~~~l~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~r~ 291 (967)
T KOG0974|consen 235 GEDCTCRVWGVNGTQLEVYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLNGRG 291 (967)
T ss_pred ccceEEEEEecccceehhhhhhhhcceeEEEEcCCceEEEeeccCcchhhhhhhccc
Confidence 999999999889988889988875 4776654 344 77788899999999976543
|
|
| >KOG4227 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.76 E-value=7.8e-07 Score=94.86 Aligned_cols=115 Identities=16% Similarity=0.235 Sum_probs=85.7
Q ss_pred eeEEEEecCC-EEEE--ecCCCEEEEeCCCCccccccccccccCCCCCCCCCCeeeeee-cCCCeEEEEEcCCCCEEEEE
Q 003171 134 FLRTIVCTEE-QLWA--GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVK-GVSSVMCMVGDEASGVVWSG 209 (842)
Q Consensus 134 ~~~~l~~~~~-~l~~--~~D~~vrvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~V~~la~dpdg~~LaSG 209 (842)
|+.+|.+..+ ++++ |.|..++||++++...... ..|+.-..+ +.+.|.||+|+..++.|+||
T Consensus 58 CiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~--------------~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG 123 (609)
T KOG4227|consen 58 CINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKT--------------PKPIGVMEHPHRSNIFSLEFDLENRFLYSG 123 (609)
T ss_pred ccceeeeccCCeEEeecCCcceeeeechHHHHhhcC--------------CCCceeccCccccceEEEEEccCCeeEecC
Confidence 7778887755 5555 4577999999976543211 122211111 26889999999999999999
Q ss_pred eCCCcEEEEECCCCccCCCCCcceeEEecccC---CcEEEEEEecCCC-EEEeeCCCcEEEEeCCC
Q 003171 210 HRDGRIMCWKMNARLLDSDDGFGEVLSWQAHR---GPVLSLCISSYGD-LWSGSEGGGIKIWPWEA 271 (842)
Q Consensus 210 s~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~---~~V~slafs~dG~-L~SgS~DgtIrvWd~~t 271 (842)
..+|+|.+-|+++. +.+-..+|. +.|+.|..+|... |++.+.++.|-+||...
T Consensus 124 ~~~~~VI~HDiEt~---------qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd 180 (609)
T KOG4227|consen 124 ERWGTVIKHDIETK---------QSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRD 180 (609)
T ss_pred CCcceeEeeecccc---------eeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccC
Confidence 99999999999984 344444554 5999999999765 78999999999999854
|
|
| >KOG1963 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.76 E-value=8.7e-07 Score=103.52 Aligned_cols=108 Identities=15% Similarity=0.181 Sum_probs=78.6
Q ss_pred CCCceEEEEECCCCc-EEEEeCCCeEEEEcCCC-----CeeeeeecCCccEEEEEe--cCCEEEEEecCcEEEEEeCCCc
Q 003171 418 DNRRTEALTTSIDGM-IWTGGANGLLLQWDPNG-----NRLQDFQYLPFAVQCLCT--FGSQIWVGYMNGIVQVLDLEGN 489 (842)
Q Consensus 418 ~~~~v~al~~s~dg~-l~Sgs~DgtIrlWD~~g-----~~l~~l~~H~~~V~sls~--dG~~LasGs~DgtIrlWD~~g~ 489 (842)
|...+.+.+++|.++ +++|..||.|.+|.--| .-.+.+.=|...|+++++ +|.+|+||+..|.+-+|.++..
T Consensus 204 Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~ 283 (792)
T KOG1963|consen 204 HTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLETG 283 (792)
T ss_pred hcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEecCCceEeecccceEEEEEeecCC
Confidence 445578899999998 78888999999997643 123445558889998864 8999999999999999998732
Q ss_pred ccccccccccCEEEEE--eCCCEEEEEcCCCCeeeccc
Q 003171 490 LLGGWVAHSSPVIKMA--VGAGYIFTLANHGGIRGWNV 525 (842)
Q Consensus 490 ~i~~l~gH~~~V~sla--~dg~~l~S~S~DgtIrvWd~ 525 (842)
--+=|.--.++|..+. +|+++.+..-.|+.|.+-..
T Consensus 284 ~kqfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~ 321 (792)
T KOG1963|consen 284 KKQFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKA 321 (792)
T ss_pred CcccccccCCeeEEEEEcCCCCeEEEEecCceEEEEec
Confidence 1222222245677665 67877766667888877653
|
|
| >KOG1976 consensus Inositol polyphosphate 5-phosphatase, type I [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.74 E-value=1.2e-08 Score=105.47 Aligned_cols=128 Identities=24% Similarity=0.380 Sum_probs=84.4
Q ss_pred ccCCCCeeEEEEEEeCeEEEEEeecCcCCcchH-----------HHHHHHHHHHHHhcCcCCCCCccchhccCCCceeee
Q 003171 673 AIGNKGAVGLRVRVYDRIMCFVNCHFAAHLEAV-----------NRRNADFDHVYRTMTFCRPSNLCSAAAAGASSVVQM 741 (842)
Q Consensus 673 ~~gnKG~v~i~~~i~~~~~~Fv~~HLaa~~~~~-----------~~Rn~~~~~I~~~l~f~~~~~~~~~~~~~~~~~~~~ 741 (842)
.++.||-.-.|++|.+..|.|||.||-...+|+ ..|.+.+..++.+|.=+
T Consensus 153 ~~~rkg~~~~r~~I~~k~fdfVN~hLFhD~snla~~~sspt~ys~~R~~al~~vL~el~~~------------------- 213 (391)
T KOG1976|consen 153 ANQRKGFLLARFRIHGKEFDFVNLHLFHDVSNLATKNSSPTKYSSKREQALEMVLKELDEE------------------- 213 (391)
T ss_pred hhhhccccceeEEEcCceeeeeehhhhcchhhhhhhcCChhhhhhhHHHHHHHHHHHHHhh-------------------
Confidence 368899999999999999999999996555544 45888888888876211
Q ss_pred cccCCCCCCCccCCCCCcCcccEEEEeccceeeecCCChH------------------HHHHH---------------hh
Q 003171 742 LRSTNPLSGLTVEGVPELSEADMVIFLGDFNYRLDGITYD------------------EARDF---------------IS 788 (842)
Q Consensus 742 ~~~~~~~~~~~~~~~~~~~~~d~vf~~GDlNyRi~~~~~~------------------~~~~~---------------i~ 788 (842)
. ...+.+|+|||||||++..+.- .+.+. |.
T Consensus 214 ----------------~-~~~~~~fVfGdfNfrLds~s~ln~l~a~q~~qtv~~~d~~~vv~~ifr~esd~drkv~l~vE 276 (391)
T KOG1976|consen 214 ----------------G-LRNDAIFVFGDFNFRLDSTSLLNYLAATQLVQTVAKKDEDGVVESIFRVESDGDRKVTLTVE 276 (391)
T ss_pred ----------------c-cCceEEEEecccccccchHHHHHHHhcCCccchhhhcccCcceeeEEeecccCCceeEEEee
Confidence 0 2457999999999999952110 00011 11
Q ss_pred hcchHHHHHhhhHHHHh--------hcCCcccC-cccCCCCCCCCcccccCCCCCCcc
Q 003171 789 QRCFDWLRERDQLRAEM--------EAGNVFQG-MREADIKFPPTYKFEKHLAGLAEA 837 (842)
Q Consensus 789 ~~~~~~L~~~DQL~~~~--------~~~~~f~g-f~E~~I~F~PTYK~~~~~~~~~~Y 837 (842)
++.|+ -..||-+...- ++-..|+. +.|..|.|||||.|..+..|-.+|
T Consensus 277 kk~FD-yfnh~~f~d~~r~~~~~~dkEl~nf~~kl~E~~i~FpPsypysed~~~~E~~ 333 (391)
T KOG1976|consen 277 KKRFD-YFNHDWFFDLGRGMVKRYDKELANFAFKLKEETIFFPPSYPYSEDDSGKEEF 333 (391)
T ss_pred hhhcc-hhhhHHHHHcCchhhhhcchHHHHHHHHHhheeecCCCCCCCCcCccchHHH
Confidence 23343 22333322110 11124554 899999999999999988765555
|
|
| >KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=98.72 E-value=2.9e-07 Score=108.60 Aligned_cols=158 Identities=17% Similarity=0.302 Sum_probs=104.4
Q ss_pred CCEEEEecC-CCEEEEeCCCCccccccccccccCCCCCCCCCCeeeeeecCCCeEEEEEcC-CCCEEEEEeCCCcEEEEE
Q 003171 142 EEQLWAGGE-NGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDE-ASGVVWSGHRDGRIMCWK 219 (842)
Q Consensus 142 ~~~l~~~~D-~~vrvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~V~~la~dp-dg~~LaSGs~DGtIrlWd 219 (842)
...|+++.| ..|||||...-.... .-|+. . ...|++|..+. .|++|+.|-.||.+|++|
T Consensus 1177 ~G~Ll~tGd~r~IRIWDa~~E~~~~---------------diP~~---s-~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD 1237 (1387)
T KOG1517|consen 1177 SGHLLVTGDVRSIRIWDAHKEQVVA---------------DIPYG---S-STLVTALSADLVHGNIIAAGFADGSVRVYD 1237 (1387)
T ss_pred CCeEEecCCeeEEEEEecccceeEe---------------ecccC---C-CccceeecccccCCceEEEeecCCceEEee
Confidence 556666554 599999996532211 11221 1 44677776654 469999999999999999
Q ss_pred CCCCccCCCCCcceeEEecccCCc--EEEEEEecCC--CEEEeeCCCcEEEEeCCCccceeecCCCceeeeEEEEeecee
Q 003171 220 MNARLLDSDDGFGEVLSWQAHRGP--VLSLCISSYG--DLWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYI 295 (842)
Q Consensus 220 l~~g~~~~~~~~~~~~~l~gH~~~--V~slafs~dG--~L~SgS~DgtIrvWd~~t~~~~l~~~~~~~~~~~l~~~~s~~ 295 (842)
..... +-..+..++.|+.. |..+.+-+.| +|+|||.||.|++||+..... .++.
T Consensus 1238 ~R~a~-----~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~-e~~~---------------- 1295 (1387)
T KOG1517|consen 1238 RRMAP-----PDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSK-ETFL---------------- 1295 (1387)
T ss_pred cccCC-----ccccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcc-cccc----------------
Confidence 87642 11356778999877 9999998876 499999999999999965211 0000
Q ss_pred ecccceeccceeeeecCCEEEEEEcCCCCEEEEeCCCcEEEEEccCCcEEEEe
Q 003171 296 DLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGFLSFALWDARTRELLKVF 348 (842)
Q Consensus 296 ~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s~~tI~lWD~~tg~~l~~l 348 (842)
++..+-.. -+..+++........++||+.+.|+||++. |+.+..+
T Consensus 1296 ~iv~~~~y-------Gs~lTal~VH~hapiiAsGs~q~ikIy~~~-G~~l~~~ 1340 (1387)
T KOG1517|consen 1296 TIVAHWEY-------GSALTALTVHEHAPIIASGSAQLIKIYSLS-GEQLNII 1340 (1387)
T ss_pred eeeecccc-------CccceeeeeccCCCeeeecCcceEEEEecC-hhhhccc
Confidence 00000000 113567777777778888888889999985 4444444
|
|
| >PRK05137 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.65 E-value=4.6e-06 Score=96.21 Aligned_cols=73 Identities=15% Similarity=0.002 Sum_probs=55.9
Q ss_pred CCCeEEEEEcCCCCEEEEEeC---CCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCCC-E-EEeeCCCc--
Q 003171 191 VSSVMCMVGDEASGVVWSGHR---DGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-L-WSGSEGGG-- 263 (842)
Q Consensus 191 ~~~V~~la~dpdg~~LaSGs~---DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L-~SgS~Dgt-- 263 (842)
..++.+.+|+|||+.|+..+. +..|.+||+.++. ...+..+.+.+.+.+|||||+ | ++.+.++.
T Consensus 201 ~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~---------~~~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~ 271 (435)
T PRK05137 201 SSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQ---------RELVGNFPGMTFAPRFSPDGRKVVMSLSQGGNTD 271 (435)
T ss_pred CCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCc---------EEEeecCCCcccCcEECCCCCEEEEEEecCCCce
Confidence 568999999999999888774 3579999998862 334556677888999999997 5 47777776
Q ss_pred EEEEeCCCc
Q 003171 264 IKIWPWEAI 272 (842)
Q Consensus 264 IrvWd~~t~ 272 (842)
|.+||++++
T Consensus 272 Iy~~d~~~~ 280 (435)
T PRK05137 272 IYTMDLRSG 280 (435)
T ss_pred EEEEECCCC
Confidence 555576553
|
|
| >KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown] | Back alignment and domain information |
|---|
Probab=98.64 E-value=3.7e-07 Score=94.43 Aligned_cols=114 Identities=16% Similarity=0.233 Sum_probs=77.5
Q ss_pred EEEEecCCCEEEEeCCCCccccccccccccCCCCCCCCCCeeeeeecCCCeEEEEEcC-CCCEEEEEeCCCcEEEEECCC
Q 003171 144 QLWAGGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDE-ASGVVWSGHRDGRIMCWKMNA 222 (842)
Q Consensus 144 ~l~~~~D~~vrvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~V~~la~dp-dg~~LaSGs~DGtIrlWdl~~ 222 (842)
.|+|.++..+|+|.+..-....+-.+ .++..+ .+-. ..|+++..+.. +-++|.+.|-|.|..|||+++
T Consensus 114 dlLATs~D~LRlWri~~ee~~~~~~~-~L~~~k---------ns~~-~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~ 182 (364)
T KOG0290|consen 114 DLLATSSDFLRLWRIGDEESRVELQS-VLNNNK---------NSEF-CAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIET 182 (364)
T ss_pred chhhcccCeEEEEeccCcCCceehhh-hhccCc---------cccc-CCcccccccccCCcceeEeecccCeEEEEEEee
Confidence 56777778899998853111100000 010000 0011 45777766654 448999999999999999998
Q ss_pred CccCCCCCcceeEEecccCCcEEEEEEecCCC--EEEeeCCCcEEEEeCCCcc
Q 003171 223 RLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD--LWSGSEGGGIKIWPWEAIE 273 (842)
Q Consensus 223 g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~--L~SgS~DgtIrvWd~~t~~ 273 (842)
+. ......+|.+|...|..|+|...|. ++|.+.||.||++|+...+
T Consensus 183 ~~-----~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~le 230 (364)
T KOG0290|consen 183 GV-----SGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLE 230 (364)
T ss_pred cc-----ccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccc
Confidence 62 1123456899999999999999775 6899999999999996543
|
|
| >KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=98.63 E-value=6.9e-06 Score=87.84 Aligned_cols=89 Identities=11% Similarity=0.194 Sum_probs=73.0
Q ss_pred CCeEEEEcC-CCCeeeeeecCCccEEEEEe--cCCEEEEEecCcE-EEEEeCC-Cccccccccc--ccCEEEEEe--CCC
Q 003171 439 NGLLLQWDP-NGNRLQDFQYLPFAVQCLCT--FGSQIWVGYMNGI-VQVLDLE-GNLLGGWVAH--SSPVIKMAV--GAG 509 (842)
Q Consensus 439 DgtIrlWD~-~g~~l~~l~~H~~~V~sls~--dG~~LasGs~Dgt-IrlWD~~-g~~i~~l~gH--~~~V~sla~--dg~ 509 (842)
.|.|.|||+ +-+.+.++..|.++|-|+++ +|.+||++|..|| |||+.+. |+.+..|+-- .-.|++|++ |++
T Consensus 152 ~GdV~l~d~~nl~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~ 231 (391)
T KOG2110|consen 152 SGDVVLFDTINLQPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQ 231 (391)
T ss_pred CceEEEEEcccceeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCCC
Confidence 578999999 77888899999999999875 7999999998775 6899986 7776666532 234678875 788
Q ss_pred EEEEEcCCCCeeeccccC
Q 003171 510 YIFTLANHGGIRGWNVTS 527 (842)
Q Consensus 510 ~l~S~S~DgtIrvWd~~~ 527 (842)
+|...|..+||.++.+..
T Consensus 232 ~L~~sS~TeTVHiFKL~~ 249 (391)
T KOG2110|consen 232 FLAASSNTETVHIFKLEK 249 (391)
T ss_pred eEEEecCCCeEEEEEecc
Confidence 999999999999998753
|
|
| >PRK03629 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.63 E-value=6.6e-06 Score=94.73 Aligned_cols=98 Identities=12% Similarity=-0.016 Sum_probs=57.8
Q ss_pred EEEECCCCc-EEEEeC-CCeEEEE--cCCCCeeeeeecCCccE--EEEEecCCEEEEEecC---cEEEEEeCCCcccccc
Q 003171 424 ALTTSIDGM-IWTGGA-NGLLLQW--DPNGNRLQDFQYLPFAV--QCLCTFGSQIWVGYMN---GIVQVLDLEGNLLGGW 494 (842)
Q Consensus 424 al~~s~dg~-l~Sgs~-DgtIrlW--D~~g~~l~~l~~H~~~V--~sls~dG~~LasGs~D---gtIrlWD~~g~~i~~l 494 (842)
...++|||+ |+..+. ++...+| |+++...+.+..+...+ .++++||++|+..+.+ ..|.+||+++...+.+
T Consensus 291 ~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~~lt~~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~~L 370 (429)
T PRK03629 291 EPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQVL 370 (429)
T ss_pred ceEECCCCCEEEEEeCCCCCceEEEEECCCCCeEEeecCCCCccCEEECCCCCEEEEEEccCCCceEEEEECCCCCeEEe
Confidence 346788887 655554 3444444 66543444444333333 3567899988876543 4688999874333333
Q ss_pred cc-cccCEEEEEeCCCEEEEEcCCCCee
Q 003171 495 VA-HSSPVIKMAVGAGYIFTLANHGGIR 521 (842)
Q Consensus 495 ~g-H~~~V~sla~dg~~l~S~S~DgtIr 521 (842)
.. +...-.++++||++++.++.|+...
T Consensus 371 t~~~~~~~p~~SpDG~~i~~~s~~~~~~ 398 (429)
T PRK03629 371 TDTFLDETPSIAPNGTMVIYSSSQGMGS 398 (429)
T ss_pred CCCCCCCCceECCCCCEEEEEEcCCCce
Confidence 22 2222234568999999988888643
|
|
| >KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=98.61 E-value=2.4e-06 Score=91.23 Aligned_cols=156 Identities=15% Similarity=0.220 Sum_probs=108.9
Q ss_pred eEEEEecCCEEEEecCCCEEEEeCCCCccccccccccccCCCCCCCCCCeeeeeecCCCeEEEEEcCCCCEEEE-Ee-CC
Q 003171 135 LRTIVCTEEQLWAGGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWS-GH-RD 212 (842)
Q Consensus 135 ~~~l~~~~~~l~~~~D~~vrvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~V~~la~dpdg~~LaS-Gs-~D 212 (842)
+-++.-..++|...=...|.|||+.+....- +| +.+.| + ...+.++.+++++-+||- ++ .-
T Consensus 90 IL~VrmNr~RLvV~Lee~IyIydI~~MklLh-TI----------~t~~~-----n-~~gl~AlS~n~~n~ylAyp~s~t~ 152 (391)
T KOG2110|consen 90 ILAVRMNRKRLVVCLEESIYIYDIKDMKLLH-TI----------ETTPP-----N-PKGLCALSPNNANCYLAYPGSTTS 152 (391)
T ss_pred eEEEEEccceEEEEEcccEEEEecccceeeh-hh----------hccCC-----C-ccceEeeccCCCCceEEecCCCCC
Confidence 3344445667777656669999998765432 11 22222 1 234677777776667765 33 34
Q ss_pred CcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCCC-EEEeeCCCc-EEEEeCCCccceeecCCCceeeeEEEE
Q 003171 213 GRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGG-IKIWPWEAIEKALSLKPEERHTAALIV 290 (842)
Q Consensus 213 GtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~Dgt-IrvWd~~t~~~~l~~~~~~~~~~~l~~ 290 (842)
|.|.+||..+- +....+.+|.++|.+|+|+++|. |+|+|+-|| |||+.+.++++...+.....
T Consensus 153 GdV~l~d~~nl--------~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~------- 217 (391)
T KOG2110|consen 153 GDVVLFDTINL--------QPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTY------- 217 (391)
T ss_pred ceEEEEEcccc--------eeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCce-------
Confidence 78999999874 66778889999999999999998 689998886 69999988776655532211
Q ss_pred eeceeecccceeccceeeeecCCEEEEEEcCCCCEEEEeCC-CcEEEEEccCC
Q 003171 291 ERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGF-LSFALWDARTR 342 (842)
Q Consensus 291 ~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s~-~tI~lWD~~tg 342 (842)
-..+..+++++++..+.+++. +||.++.+.+.
T Consensus 218 --------------------~~~IySL~Fs~ds~~L~~sS~TeTVHiFKL~~~ 250 (391)
T KOG2110|consen 218 --------------------PVSIYSLSFSPDSQFLAASSNTETVHIFKLEKV 250 (391)
T ss_pred --------------------eeEEEEEEECCCCCeEEEecCCCeEEEEEeccc
Confidence 114667888888887777664 68999887653
|
|
| >KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.60 E-value=9.7e-08 Score=104.04 Aligned_cols=100 Identities=20% Similarity=0.292 Sum_probs=51.2
Q ss_pred EEEEeCCCeEEEEcC-CCCeeeeeecCCccEEEEEe--cCCEEEEEecCcEEEEEeCCC-cccccccccccCEEEEEe--
Q 003171 433 IWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQCLCT--FGSQIWVGYMNGIVQVLDLEG-NLLGGWVAHSSPVIKMAV-- 506 (842)
Q Consensus 433 l~Sgs~DgtIrlWD~-~g~~l~~l~~H~~~V~sls~--dG~~LasGs~DgtIrlWD~~g-~~i~~l~gH~~~V~sla~-- 506 (842)
|++++..|-++--|+ .|+.+..+..-.+.+..++. -...|-.|...|+|.+|..+. .++..+..|.++|.+|+.
T Consensus 224 L~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~skePLvKiLcH~g~V~siAv~~ 303 (545)
T KOG1272|consen 224 LVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSKEPLVKILCHRGPVSSIAVDR 303 (545)
T ss_pred eeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcCCCceEEecCCCCcchHHHHHhcCCCcceEEECC
Confidence 344555555555555 45555554443444433332 233445555555666665552 345555555566655553
Q ss_pred CCCEEEEEcCCCCeeeccccCCCCCc
Q 003171 507 GAGYIFTLANHGGIRGWNVTSPGPLD 532 (842)
Q Consensus 507 dg~~l~S~S~DgtIrvWd~~~~~~~d 532 (842)
+|.|++|.|.|..++|||++.+..+.
T Consensus 304 ~G~YMaTtG~Dr~~kIWDlR~~~ql~ 329 (545)
T KOG1272|consen 304 GGRYMATTGLDRKVKIWDLRNFYQLH 329 (545)
T ss_pred CCcEEeecccccceeEeeeccccccc
Confidence 45555555666666666655544333
|
|
| >KOG2394 consensus WD40 protein DMR-N9 [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.60 E-value=6.8e-08 Score=106.83 Aligned_cols=87 Identities=22% Similarity=0.205 Sum_probs=75.8
Q ss_pred ceEEEEECCCCc-EEEEeCCCeEEEEcC-CCCeeeeeecCCccEEEE--EecCCEEEEEecCcEEEEEeCC-Cccccccc
Q 003171 421 RTEALTTSIDGM-IWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQCL--CTFGSQIWVGYMNGIVQVLDLE-GNLLGGWV 495 (842)
Q Consensus 421 ~v~al~~s~dg~-l~Sgs~DgtIrlWD~-~g~~l~~l~~H~~~V~sl--s~dG~~LasGs~DgtIrlWD~~-g~~i~~l~ 495 (842)
.+...+|+|||+ |++.|.||.+||+|- +-+++..++..-+..+|+ ++||+||++|++|.-|.||... .+.+..=.
T Consensus 292 ~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~erRVVARGq 371 (636)
T KOG2394|consen 292 SINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEERRVVARGQ 371 (636)
T ss_pred cccceeEcCCCceEEEEecCceEEEeeccHHHHHHHHHhhccceEEEEEcCCccEEEecCCcceEEEEEeccceEEEecc
Confidence 566789999998 899999999999999 556666676556677877 5799999999999999999986 78888889
Q ss_pred ccccCEEEEEeC
Q 003171 496 AHSSPVIKMAVG 507 (842)
Q Consensus 496 gH~~~V~sla~d 507 (842)
||.++|..|++|
T Consensus 372 GHkSWVs~VaFD 383 (636)
T KOG2394|consen 372 GHKSWVSVVAFD 383 (636)
T ss_pred ccccceeeEeec
Confidence 999999999988
|
|
| >TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL | Back alignment and domain information |
|---|
Probab=98.58 E-value=4.8e-05 Score=85.96 Aligned_cols=306 Identities=14% Similarity=0.161 Sum_probs=158.0
Q ss_pred EEecCCEEEEec-CCCEEEEeCCCCccccccccccccCCCCCCCCCCeeeeeecCCCeEEEEEcCCCCEEEEEeCCCcEE
Q 003171 138 IVCTEEQLWAGG-ENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGHRDGRIM 216 (842)
Q Consensus 138 l~~~~~~l~~~~-D~~vrvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~V~~la~dpdg~~LaSGs~DGtIr 216 (842)
.+..++.++++. ++.|..+|.+++..... ..+. .......++ +++.++.|+.||.+.
T Consensus 61 p~v~~~~v~v~~~~g~v~a~d~~tG~~~W~-------------------~~~~-~~~~~~p~v--~~~~v~v~~~~g~l~ 118 (377)
T TIGR03300 61 PAVAGGKVYAADADGTVVALDAETGKRLWR-------------------VDLD-ERLSGGVGA--DGGLVFVGTEKGEVI 118 (377)
T ss_pred eEEECCEEEEECCCCeEEEEEccCCcEeee-------------------ecCC-CCcccceEE--cCCEEEEEcCCCEEE
Confidence 344577888754 67899999877654432 0010 000011222 467888999999999
Q ss_pred EEECCCCccCCCCCcceeEEecccCCcEEEEEEecCCCEEEeeCCCcEEEEeCCCccceeecCCCceeeeEEEEeeceee
Q 003171 217 CWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGDLWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYID 296 (842)
Q Consensus 217 lWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~L~SgS~DgtIrvWd~~t~~~~l~~~~~~~~~~~l~~~~s~~~ 296 (842)
.+|..+| +.+-+..- .+.+.+.....++.++.++.|+.|..||.++++...+.........
T Consensus 119 ald~~tG--------~~~W~~~~-~~~~~~~p~v~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~---------- 179 (377)
T TIGR03300 119 ALDAEDG--------KELWRAKL-SSEVLSPPLVANGLVVVRTNDGRLTALDAATGERLWTYSRVTPALT---------- 179 (377)
T ss_pred EEECCCC--------cEeeeecc-CceeecCCEEECCEEEEECCCCeEEEEEcCCCceeeEEccCCCcee----------
Confidence 9999887 33322211 1223222222345677788899999999988765444321110000
Q ss_pred cccceeccceeeeecCCEEEEEEcCCCCEEEEeC-CCcEEEEEccCCcEEEEeecCCceEeeeecccCCCcccccceEEE
Q 003171 297 LRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTK 375 (842)
Q Consensus 297 l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s-~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~ 375 (842)
+++ . ... +.. ++ .+..+. ++.+..+|+++|+.+-........ .......... .....
T Consensus 180 ~~~-----~-----~sp---~~~--~~-~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~-g~~~~~~~~~--~~~~p--- 237 (377)
T TIGR03300 180 LRG-----S-----ASP---VIA--DG-GVLVGFAGGKLVALDLQTGQPLWEQRVALPK-GRTELERLVD--VDGDP--- 237 (377)
T ss_pred ecC-----C-----CCC---EEE--CC-EEEEECCCCEEEEEEccCCCEeeeeccccCC-CCCchhhhhc--cCCcc---
Confidence 000 0 000 111 12 333333 457788888888765432210000 0000000000 00000
Q ss_pred EEecCCCCccceeeeEeecCcceEEecCC-cEEEEee-cCccc--cCCCceEEEEECCCCcEEEEeCCCeEEEEcC-CCC
Q 003171 376 IVTSSKKDKAQSSFGFFQRSRNAIMGAAD-AVRRVAA-KGGFG--DDNRRTEALTTSIDGMIWTGGANGLLLQWDP-NGN 450 (842)
Q Consensus 376 ~~s~~~~~~~~~s~~~~~~~~~~~~g~~~-~v~~v~~-~g~~~--~~~~~v~al~~s~dg~l~Sgs~DgtIrlWD~-~g~ 450 (842)
++. +..++++..+ .++.+.. .|... .........+. .+++++.++.||.|..+|. +|+
T Consensus 238 ~~~----------------~~~vy~~~~~g~l~a~d~~tG~~~W~~~~~~~~~p~~-~~~~vyv~~~~G~l~~~d~~tG~ 300 (377)
T TIGR03300 238 VVD----------------GGQVYAVSYQGRVAALDLRSGRVLWKRDASSYQGPAV-DDNRLYVTDADGVVVALDRRSGS 300 (377)
T ss_pred EEE----------------CCEEEEEEcCCEEEEEECCCCcEEEeeccCCccCceE-eCCEEEEECCCCeEEEEECCCCc
Confidence 000 0111222211 1222221 11100 00011111222 3677888889999999999 787
Q ss_pred eeeeeecCCc-cEEEEEecCCEEEEEecCcEEEEEeCC-CcccccccccccCEEE-EEeCCCEEEEEcCCCCeeec
Q 003171 451 RLQDFQYLPF-AVQCLCTFGSQIWVGYMNGIVQVLDLE-GNLLGGWVAHSSPVIK-MAVGAGYIFTLANHGGIRGW 523 (842)
Q Consensus 451 ~l~~l~~H~~-~V~sls~dG~~LasGs~DgtIrlWD~~-g~~i~~l~gH~~~V~s-la~dg~~l~S~S~DgtIrvW 523 (842)
.+-....-.. .+.+....|.+|++++.+|.|.++|.+ |+.+..+..|...+.+ .+.-++.|+-++.||.|..+
T Consensus 301 ~~W~~~~~~~~~~ssp~i~g~~l~~~~~~G~l~~~d~~tG~~~~~~~~~~~~~~~sp~~~~~~l~v~~~dG~l~~~ 376 (377)
T TIGR03300 301 ELWKNDELKYRQLTAPAVVGGYLVVGDFEGYLHWLSREDGSFVARLKTDGSGIASPPVVVGDGLLVQTRDGDLYAF 376 (377)
T ss_pred EEEccccccCCccccCEEECCEEEEEeCCCEEEEEECCCCCEEEEEEcCCCccccCCEEECCEEEEEeCCceEEEe
Confidence 6644421111 122334468899999999999999986 8888888777755443 33444568889999988654
|
Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ. |
| >KOG3881 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.56 E-value=5.6e-06 Score=89.06 Aligned_cols=105 Identities=15% Similarity=0.204 Sum_probs=87.7
Q ss_pred CCcEEEEeCCCeEEEEcC-CC-CeeeeeecCCccEEEEE--ecCCEEEEEecCcEEEEEeCC-Cccccc-ccccccCEEE
Q 003171 430 DGMIWTGGANGLLLQWDP-NG-NRLQDFQYLPFAVQCLC--TFGSQIWVGYMNGIVQVLDLE-GNLLGG-WVAHSSPVIK 503 (842)
Q Consensus 430 dg~l~Sgs~DgtIrlWD~-~g-~~l~~l~~H~~~V~sls--~dG~~LasGs~DgtIrlWD~~-g~~i~~-l~gH~~~V~s 503 (842)
..++++++.-+.||+||. .+ +.+..|.--.++|.++. ++|.+|++|..-+.+..+|+. ++++.. ++|-++.|.+
T Consensus 216 ~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tGsirs 295 (412)
T KOG3881|consen 216 NYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGLKGITGSIRS 295 (412)
T ss_pred CceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecCCCcEEEEecccchhheecccCceeeccccCCccCCcce
Confidence 345899999999999999 45 56777777778888874 689999999999999999998 566655 8999999999
Q ss_pred EEeCCC--EEEEEcCCCCeeeccccCCCCCcch
Q 003171 504 MAVGAG--YIFTLANHGGIRGWNVTSPGPLDSI 534 (842)
Q Consensus 504 la~dg~--~l~S~S~DgtIrvWd~~~~~~~d~~ 534 (842)
|-.+++ +++|+|-|..|||.|+.+..++..+
T Consensus 296 ih~hp~~~~las~GLDRyvRIhD~ktrkll~kv 328 (412)
T KOG3881|consen 296 IHCHPTHPVLASCGLDRYVRIHDIKTRKLLHKV 328 (412)
T ss_pred EEEcCCCceEEeeccceeEEEeecccchhhhhh
Confidence 986655 8999999999999999886665543
|
|
| >PRK02889 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.55 E-value=6.3e-06 Score=94.85 Aligned_cols=71 Identities=10% Similarity=0.013 Sum_probs=53.3
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCC---cEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCCC-EE-EeeCCCcEE
Q 003171 191 VSSVMCMVGDEASGVVWSGHRDG---RIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LW-SGSEGGGIK 265 (842)
Q Consensus 191 ~~~V~~la~dpdg~~LaSGs~DG---tIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~-SgS~DgtIr 265 (842)
..++.+.+|+|||+.|+..+.+. .|.+||+.++. ...+....+.+.+.+|||||+ |+ +.+.|+..+
T Consensus 195 ~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~---------~~~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~ 265 (427)
T PRK02889 195 PEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGR---------RRVVANFKGSNSAPAWSPDGRTLAVALSRDGNSQ 265 (427)
T ss_pred CCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCC---------EEEeecCCCCccceEECCCCCEEEEEEccCCCce
Confidence 45788999999999998877543 59999998862 223333345567899999997 54 778899888
Q ss_pred EEeCC
Q 003171 266 IWPWE 270 (842)
Q Consensus 266 vWd~~ 270 (842)
||.++
T Consensus 266 Iy~~d 270 (427)
T PRK02889 266 IYTVN 270 (427)
T ss_pred EEEEE
Confidence 88764
|
|
| >KOG2394 consensus WD40 protein DMR-N9 [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.55 E-value=8.3e-07 Score=98.44 Aligned_cols=93 Identities=13% Similarity=0.215 Sum_probs=72.5
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCCC-EEEeeCCCcEEEEeC
Q 003171 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPW 269 (842)
Q Consensus 191 ~~~V~~la~dpdg~~LaSGs~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~ 269 (842)
.++|...+|+|||++||+-|.||.+||++..+. +.+..++.--+...||+|||||+ |++|++|..|-||.+
T Consensus 290 ~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~--------eLlg~mkSYFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf 361 (636)
T KOG2394|consen 290 EGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQ--------ELLGVMKSYFGGLLCVCWSPDGKYIVTGGEDDLVTVWSF 361 (636)
T ss_pred cccccceeEcCCCceEEEEecCceEEEeeccHH--------HHHHHHHhhccceEEEEEcCCccEEEecCCcceEEEEEe
Confidence 568888999999999999999999999999884 33333444568999999999999 789999999999999
Q ss_pred CCccceeecCCCceeeeEEEEe
Q 003171 270 EAIEKALSLKPEERHTAALIVE 291 (842)
Q Consensus 270 ~t~~~~l~~~~~~~~~~~l~~~ 291 (842)
....-.-..+.+..++..+.++
T Consensus 362 ~erRVVARGqGHkSWVs~VaFD 383 (636)
T KOG2394|consen 362 EERRVVARGQGHKSWVSVVAFD 383 (636)
T ss_pred ccceEEEeccccccceeeEeec
Confidence 6544333445555555555443
|
|
| >PRK05137 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.55 E-value=1.3e-05 Score=92.47 Aligned_cols=197 Identities=13% Similarity=-0.002 Sum_probs=111.7
Q ss_pred cEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCCC-EEEee---CCCcEEEEeCCCccceeecCCCceeeeEEE
Q 003171 214 RIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGS---EGGGIKIWPWEAIEKALSLKPEERHTAALI 289 (842)
Q Consensus 214 tIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS---~DgtIrvWd~~t~~~~l~~~~~~~~~~~l~ 289 (842)
.|.+||.++. ....+..|...|.+.+|||||+ |+..+ .+..|.+||+.+++... +...
T Consensus 183 ~l~~~d~dg~---------~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~-l~~~-------- 244 (435)
T PRK05137 183 RLAIMDQDGA---------NVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQREL-VGNF-------- 244 (435)
T ss_pred EEEEECCCCC---------CcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEE-eecC--------
Confidence 6777887663 3455678888999999999998 66544 34689999997653211 1000
Q ss_pred EeeceeecccceeccceeeeecCCEEEEEEcCCCCEEE-EeC-C--CcEEEEEccCCcEEEEeecCCceEeeeecccCCC
Q 003171 290 VERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVW-SAG-F--LSFALWDARTRELLKVFNIDGQIENRVDMSLLPD 365 (842)
Q Consensus 290 ~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~-s~s-~--~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~ 365 (842)
...+.....++++.+|+ +.+ + ..|.+||+.++++.+ +..+.
T Consensus 245 ---------------------~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~~-Lt~~~------------- 289 (435)
T PRK05137 245 ---------------------PGMTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLRSGTTTR-LTDSP------------- 289 (435)
T ss_pred ---------------------CCcccCcEECCCCCEEEEEEecCCCceEEEEECCCCceEE-ccCCC-------------
Confidence 00112234455555443 322 2 247777887765422 11100
Q ss_pred cccccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEeecCccccCCCceEEEEECCCCc-EEEEeC-CC--e
Q 003171 366 FAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGM-IWTGGA-NG--L 441 (842)
Q Consensus 366 ~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~al~~s~dg~-l~Sgs~-Dg--t 441 (842)
.......++|||+ |+..+. +| .
T Consensus 290 ------------------------------------------------------~~~~~~~~spDG~~i~f~s~~~g~~~ 315 (435)
T PRK05137 290 ------------------------------------------------------AIDTSPSYSPDGSQIVFESDRSGSPQ 315 (435)
T ss_pred ------------------------------------------------------CccCceeEcCCCCEEEEEECCCCCCe
Confidence 0011245677876 555442 32 5
Q ss_pred EEEEcCCCCeeeeeecCCccEE--EEEecCCEEEEEecC---cEEEEEeCCCccccccc-ccccCEEEEEeCCCEEEEEc
Q 003171 442 LLQWDPNGNRLQDFQYLPFAVQ--CLCTFGSQIWVGYMN---GIVQVLDLEGNLLGGWV-AHSSPVIKMAVGAGYIFTLA 515 (842)
Q Consensus 442 IrlWD~~g~~l~~l~~H~~~V~--sls~dG~~LasGs~D---gtIrlWD~~g~~i~~l~-gH~~~V~sla~dg~~l~S~S 515 (842)
|.+||+++...+.+..+...+. .+++||++|+..+.+ ..|.+||+++...+.+. ++...-.+.++||+.|+..+
T Consensus 316 Iy~~d~~g~~~~~lt~~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~~~lt~~~~~~~p~~spDG~~i~~~~ 395 (435)
T PRK05137 316 LYVMNADGSNPRRISFGGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGERILTSGFLVEGPTWAPNGRVIMFFR 395 (435)
T ss_pred EEEEECCCCCeEEeecCCCcccCeEECCCCCEEEEEEcCCCceEEEEEECCCCceEeccCCCCCCCCeECCCCCEEEEEE
Confidence 8888986655555554333333 457899988876643 47889998754333332 22111123457888877554
Q ss_pred CC
Q 003171 516 NH 517 (842)
Q Consensus 516 ~D 517 (842)
.+
T Consensus 396 ~~ 397 (435)
T PRK05137 396 QT 397 (435)
T ss_pred cc
Confidence 43
|
|
| >TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB | Back alignment and domain information |
|---|
Probab=98.55 E-value=6.9e-06 Score=93.92 Aligned_cols=73 Identities=12% Similarity=0.007 Sum_probs=54.0
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCC---cEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCCC-EE-EeeCCC--c
Q 003171 191 VSSVMCMVGDEASGVVWSGHRDG---RIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LW-SGSEGG--G 263 (842)
Q Consensus 191 ~~~V~~la~dpdg~~LaSGs~DG---tIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~-SgS~Dg--t 263 (842)
...+.+.+++|||+.|+.++.++ .|.+|++.++ + ...+..+.+.+.+++|+|||+ |+ +.+.++ .
T Consensus 189 ~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g--------~-~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~ 259 (417)
T TIGR02800 189 REPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATG--------Q-REKVASFPGMNGAPAFSPDGSKLAVSLSKDGNPD 259 (417)
T ss_pred CCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCC--------C-EEEeecCCCCccceEECCCCCEEEEEECCCCCcc
Confidence 44688889999999998877653 7999999886 2 233445666778899999997 54 666555 5
Q ss_pred EEEEeCCCc
Q 003171 264 IKIWPWEAI 272 (842)
Q Consensus 264 IrvWd~~t~ 272 (842)
|.+|++.++
T Consensus 260 i~~~d~~~~ 268 (417)
T TIGR02800 260 IYVMDLDGK 268 (417)
T ss_pred EEEEECCCC
Confidence 788888653
|
The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear. |
| >KOG1310 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.50 E-value=3.1e-07 Score=101.67 Aligned_cols=124 Identities=19% Similarity=0.277 Sum_probs=92.3
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEe-cccCCcEEEEEEecCC--C-EEEeeCCCcEEE
Q 003171 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSW-QAHRGPVLSLCISSYG--D-LWSGSEGGGIKI 266 (842)
Q Consensus 191 ~~~V~~la~dpdg~~LaSGs~DGtIrlWdl~~g~~~~~~~~~~~~~l-~gH~~~V~slafs~dG--~-L~SgS~DgtIrv 266 (842)
++-|.||.|+.+|.+|+|||.|-.+.|||.-.. +.++.. .||++.|.|+.|-|.. + ++||+.|..|||
T Consensus 50 ~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~--------KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~l 121 (758)
T KOG1310|consen 50 TGCVNCLEWNADGELLASGSDDTRLIVWDPFEY--------KLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKL 121 (758)
T ss_pred cceecceeecCCCCEEeecCCcceEEeecchhc--------ceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEE
Confidence 889999999999999999999999999998753 444444 6999999999999964 2 679999999999
Q ss_pred EeCCCccceeecCCCceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcCCC-CEEEEeC-CCcEEEEEccC
Q 003171 267 WPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSR-AKVWSAG-FLSFALWDART 341 (842)
Q Consensus 267 Wd~~t~~~~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~-~~v~s~s-~~tI~lWD~~t 341 (842)
+|+...+. ......+. .....+..+...|+-++..+.+ ..+|+++ |++|+-+|++-
T Consensus 122 fdl~~~~~----~~~d~~~~---------------~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiRE 179 (758)
T KOG1310|consen 122 FDLDSSKE----GGMDHGME---------------ETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIRE 179 (758)
T ss_pred Eecccccc----cccccCcc---------------chhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccC
Confidence 99975211 00000000 0111112235668888887776 6899998 78999999864
|
|
| >KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.50 E-value=1.1e-05 Score=84.99 Aligned_cols=236 Identities=11% Similarity=0.077 Sum_probs=156.6
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCC-CEEEeeCCCcEEEEeC
Q 003171 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYG-DLWSGSEGGGIKIWPW 269 (842)
Q Consensus 191 ~~~V~~la~dpdg~~LaSGs~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG-~L~SgS~DgtIrvWd~ 269 (842)
..||+|.++++|+..+|.+-....|.|+.+.+. ...+..++++-|...|+.|.++|.+ +|+||+.|..-.||..
T Consensus 10 ~~pitchAwn~drt~iAv~~~~~evhiy~~~~~-----~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~ 84 (361)
T KOG1523|consen 10 LEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGA-----DLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQ 84 (361)
T ss_pred cCceeeeeecCCCceEEeccCCceEEEEEecCC-----CCceeceehhhhCcceeEEeecCCCCceeEccCCCCcccccc
Confidence 459999999999999999999999999998774 3346778899999999999999988 5999999999999987
Q ss_pred CCccceeecCCCceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcCCCCEEEEeCC-CcEEEEEccCCcEEEEe
Q 003171 270 EAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGF-LSFALWDARTRELLKVF 348 (842)
Q Consensus 270 ~t~~~~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s~-~tI~lWD~~tg~~l~~l 348 (842)
..+. ....++ +.+| .+...+++-=++.+.+++.++. +.|.||-.+.
T Consensus 85 ~~~~---------~Wkptl------vLlR-----------iNrAAt~V~WsP~enkFAVgSgar~isVcy~E~------- 131 (361)
T KOG1523|consen 85 PSGG---------TWKPTL------VLLR-----------INRAATCVKWSPKENKFAVGSGARLISVCYYEQ------- 131 (361)
T ss_pred CCCC---------eeccce------eEEE-----------eccceeeEeecCcCceEEeccCccEEEEEEEec-------
Confidence 3211 011111 1111 1234455665677777777664 4555654321
Q ss_pred ecCCceEeeeecccCCCcccccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEeecCccccCCCceEEEEEC
Q 003171 349 NIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTS 428 (842)
Q Consensus 349 ~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~al~~s 428 (842)
... |.-++.-+ ......|.++.+.
T Consensus 132 --ENd-----------------------WWVsKhik-------------------------------kPirStv~sldWh 155 (361)
T KOG1523|consen 132 --END-----------------------WWVSKHIK-------------------------------KPIRSTVTSLDWH 155 (361)
T ss_pred --ccc-----------------------eehhhhhC-------------------------------Cccccceeeeecc
Confidence 111 11110000 0122446677787
Q ss_pred CCCc-EEEEeCCCeEEEEcC--C-----------------CCeeeeeecCCccEEEEEe--cCCEEEEEecCcEEEEEeC
Q 003171 429 IDGM-IWTGGANGLLLQWDP--N-----------------GNRLQDFQYLPFAVQCLCT--FGSQIWVGYMNGIVQVLDL 486 (842)
Q Consensus 429 ~dg~-l~Sgs~DgtIrlWD~--~-----------------g~~l~~l~~H~~~V~sls~--dG~~LasGs~DgtIrlWD~ 486 (842)
|++. |+.||.|+..|++.. + |+++.++....++|..+.+ +|.+|+=.+.|.+|.+=|.
T Consensus 156 pnnVLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da 235 (361)
T KOG1523|consen 156 PNNVLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDA 235 (361)
T ss_pred CCcceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecCCCceEEeec
Confidence 8887 678889999999853 1 2233444445678887754 6999998899999999998
Q ss_pred CCc--ccccccccccCEEEEEe-CCCEEEEEcCCCCe
Q 003171 487 EGN--LLGGWVAHSSPVIKMAV-GAGYIFTLANHGGI 520 (842)
Q Consensus 487 ~g~--~i~~l~gH~~~V~sla~-dg~~l~S~S~DgtI 520 (842)
.+. ...+...-.-+..++.+ ....++.++.|..=
T Consensus 236 ~~p~~~v~~~~~~~lP~ls~~~ise~~vv~ag~~c~P 272 (361)
T KOG1523|consen 236 AGPSERVQSVATAQLPLLSVSWISENSVVAAGYDCGP 272 (361)
T ss_pred CCCchhccchhhccCCceeeEeecCCceeecCCCCCc
Confidence 743 34443333356666664 56677777777543
|
|
| >KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.49 E-value=3.6e-07 Score=99.73 Aligned_cols=222 Identities=14% Similarity=0.161 Sum_probs=147.4
Q ss_pred EEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCCCEEEeeCCCcEEEEeCCCccc
Q 003171 195 MCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGDLWSGSEGGGIKIWPWEAIEK 274 (842)
Q Consensus 195 ~~la~dpdg~~LaSGs~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~L~SgS~DgtIrvWd~~t~~~ 274 (842)
+.+.++.+|+.|+.|+..|.+-..|..++ +....+. =...|.++.|-.+-+++....-+-+.|+|-.+.+
T Consensus 133 Y~~~ytrnGrhlllgGrKGHlAa~Dw~t~--------~L~~Ei~-v~Etv~Dv~~LHneq~~AVAQK~y~yvYD~~GtE- 202 (545)
T KOG1272|consen 133 YHLDYTRNGRHLLLGGRKGHLAAFDWVTK--------KLHFEIN-VMETVRDVTFLHNEQFFAVAQKKYVYVYDNNGTE- 202 (545)
T ss_pred eeeeecCCccEEEecCCccceeeeecccc--------eeeeeee-hhhhhhhhhhhcchHHHHhhhhceEEEecCCCcE-
Confidence 45778889999999999999999999885 2322221 1567899999887777777778888999875432
Q ss_pred eeecCCCceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcCCCCEEEEeCC-CcEEEEEccCCcEEEEeecCCc
Q 003171 275 ALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGF-LSFALWDARTRELLKVFNIDGQ 353 (842)
Q Consensus 275 ~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s~-~tI~lWD~~tg~~l~~l~~~~~ 353 (842)
.-++.. ...+..+-+-+---.+++++. +-++.-|+.+|+++..+....
T Consensus 203 lHClk~------------------------------~~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~- 251 (545)
T KOG1272|consen 203 LHCLKR------------------------------HIRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGA- 251 (545)
T ss_pred Eeehhh------------------------------cCchhhhcccchhheeeecccCCceEEEeechhhhhHHHHccC-
Confidence 111110 112222333333334444443 456777888887643332100
Q ss_pred eEeeeecccCCCcccccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEeecCccccCCCceEEEEECC-CCc
Q 003171 354 IENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSI-DGM 432 (842)
Q Consensus 354 ~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~al~~s~-dg~ 432 (842)
+.+..+...| +..
T Consensus 252 ------------------------------------------------------------------G~~~vm~qNP~NaV 265 (545)
T KOG1272|consen 252 ------------------------------------------------------------------GRTDVMKQNPYNAV 265 (545)
T ss_pred ------------------------------------------------------------------CccchhhcCCccce
Confidence 0000111112 223
Q ss_pred EEEEeCCCeEEEEcC-CCCeeeeeecCCccEEEEEe--cCCEEEEEecCcEEEEEeCCC-cccccccccccCEEEEEeCC
Q 003171 433 IWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQCLCT--FGSQIWVGYMNGIVQVLDLEG-NLLGGWVAHSSPVIKMAVGA 508 (842)
Q Consensus 433 l~Sgs~DgtIrlWD~-~g~~l~~l~~H~~~V~sls~--dG~~LasGs~DgtIrlWD~~g-~~i~~l~gH~~~V~sla~dg 508 (842)
+-+|..+|+|-+|.. ..+.+..+..|.++|.+|++ .|.|+++.+.|..++|||+.+ ..+.+... .-+...++.+.
T Consensus 266 ih~GhsnGtVSlWSP~skePLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~t-p~~a~~ls~Sq 344 (545)
T KOG1272|consen 266 IHLGHSNGTVSLWSPNSKEPLVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRT-PHPASNLSLSQ 344 (545)
T ss_pred EEEcCCCceEEecCCCCcchHHHHHhcCCCcceEEECCCCcEEeecccccceeEeeeccccccceeec-CCCcccccccc
Confidence 567899999999999 46788888899999999987 488999999999999999974 33333322 23456677777
Q ss_pred CEEEEEcCCCCeeecc
Q 003171 509 GYIFTLANHGGIRGWN 524 (842)
Q Consensus 509 ~~l~S~S~DgtIrvWd 524 (842)
+.++.+|.-.-|.+|.
T Consensus 345 kglLA~~~G~~v~iw~ 360 (545)
T KOG1272|consen 345 KGLLALSYGDHVQIWK 360 (545)
T ss_pred ccceeeecCCeeeeeh
Confidence 7788888888899996
|
|
| >PRK04922 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.47 E-value=9.4e-06 Score=93.61 Aligned_cols=52 Identities=15% Similarity=-0.002 Sum_probs=38.9
Q ss_pred CcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCCC-EEEeeC---CCcEEEEeCCCcc
Q 003171 213 GRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSE---GGGIKIWPWEAIE 273 (842)
Q Consensus 213 GtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~---DgtIrvWd~~t~~ 273 (842)
.+|.+||.++. ..+.+..|...|.+.+|+|||+ |+..+. +..|.+||+.+++
T Consensus 184 ~~l~i~D~~g~---------~~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~ 239 (433)
T PRK04922 184 YALQVADSDGY---------NPQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQ 239 (433)
T ss_pred EEEEEECCCCC---------CceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCC
Confidence 36888998763 3455667788999999999997 766553 3469999997654
|
|
| >PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A | Back alignment and domain information |
|---|
Probab=98.43 E-value=5.5e-05 Score=85.14 Aligned_cols=295 Identities=12% Similarity=0.067 Sum_probs=146.8
Q ss_pred EEEeCCCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCCC-EEEeeCCCcEEEEeCCCccceeecCCCceee
Q 003171 207 WSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEKALSLKPEERHT 285 (842)
Q Consensus 207 aSGs~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~~t~~~~l~~~~~~~~~ 285 (842)
++-..+|.+.+.|..+. +.+..+..+.+.-..++|+|||+ ++.++.||.|-++|+.+.+..-+...
T Consensus 10 V~~~~~~~v~viD~~t~--------~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~----- 76 (369)
T PF02239_consen 10 VVERGSGSVAVIDGATN--------KVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKV----- 76 (369)
T ss_dssp EEEGGGTEEEEEETTT---------SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE------
T ss_pred EEecCCCEEEEEECCCC--------eEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEec-----
Confidence 45556899999999885 55666655444445678999998 77888999999999977542211110
Q ss_pred eEEEEeeceeecccceeccceeeeecCCEEEEEEcCCCCEEEEeC--CCcEEEEEccCCcEEEEeecCCceEeeeecccC
Q 003171 286 AALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG--FLSFALWDARTRELLKVFNIDGQIENRVDMSLL 363 (842)
Q Consensus 286 ~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s--~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~ 363 (842)
-.....++.+++|..++.+. ..++.++|.+|.++++.+...+... ..
T Consensus 77 -------------------------G~~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~---~~--- 125 (369)
T PF02239_consen 77 -------------------------GGNPRGIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPV---DG--- 125 (369)
T ss_dssp -------------------------SSEEEEEEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-T---TT---
T ss_pred -------------------------CCCcceEEEcCCCCEEEEEecCCCceeEeccccccceeecccccccc---cc---
Confidence 11235577778888888776 4789999999999988765321100 00
Q ss_pred CCcccccceEE-EEEecCCCCccceeeeEeecCcceEEecCCcEEEEeecC------ccccCCCceEEEEECCCCc-EEE
Q 003171 364 PDFAMEDEFKT-KIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKG------GFGDDNRRTEALTTSIDGM-IWT 435 (842)
Q Consensus 364 ~~~~~~~~~~~-~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g------~~~~~~~~v~al~~s~dg~-l~S 435 (842)
.+.|. .++....+..-. ++..+ .+.+..+.... +............++|+|+ ++.
T Consensus 126 ------~~~Rv~aIv~s~~~~~fV--v~lkd---------~~~I~vVdy~d~~~~~~~~i~~g~~~~D~~~dpdgry~~v 188 (369)
T PF02239_consen 126 ------PESRVAAIVASPGRPEFV--VNLKD---------TGEIWVVDYSDPKNLKVTTIKVGRFPHDGGFDPDGRYFLV 188 (369)
T ss_dssp ------S---EEEEEE-SSSSEEE--EEETT---------TTEEEEEETTTSSCEEEEEEE--TTEEEEEE-TTSSEEEE
T ss_pred ------cCCCceeEEecCCCCEEE--EEEcc---------CCeEEEEEeccccccceeeecccccccccccCcccceeee
Confidence 00000 000000000000 00000 01111111000 0111122334577899987 444
Q ss_pred -EeCCCeEEEEcC-CCCeeeeee----cCCccEEEE-----------EecCCEEEEEecCcEEEEEeCC-Cccccccccc
Q 003171 436 -GGANGLLLQWDP-NGNRLQDFQ----YLPFAVQCL-----------CTFGSQIWVGYMNGIVQVLDLE-GNLLGGWVAH 497 (842)
Q Consensus 436 -gs~DgtIrlWD~-~g~~l~~l~----~H~~~V~sl-----------s~dG~~LasGs~DgtIrlWD~~-g~~i~~l~gH 497 (842)
...++.|-++|. +++.+..+. .|..++..+ .-.+....+.-....+.+||.. .+.++++...
T Consensus 189 a~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~~ 268 (369)
T PF02239_consen 189 AANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYAWKVVKTIPTQ 268 (369)
T ss_dssp EEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSSEEEEEE--TTT-STTTBTSEEEEEE-S
T ss_pred cccccceeEEEeeccceEEEEeeccccccccccccccCCCcceEEeeccccceecccccCCccccchhhcCeEEEEEECC
Confidence 345678999999 565554443 244444433 2233333222223345567765 6778887776
Q ss_pred ccCEEE-EEeCCCEEEEE----cCCCCeeeccccCCCCCcchhh-hhhcccccccccccceeEEEEEEEeCC
Q 003171 498 SSPVIK-MAVGAGYIFTL----ANHGGIRGWNVTSPGPLDSILC-KELAGKEFLYTRMENLKILAGTWNVGQ 563 (842)
Q Consensus 498 ~~~V~s-la~dg~~l~S~----S~DgtIrvWd~~~~~~~d~~l~-~~l~~r~~~y~~~~~~~i~~~twNv~~ 563 (842)
.+++.- ..+++.+++.. ...++|.++|.++......+-. ....--+.+|++.+. .+++..|+.++
T Consensus 269 G~glFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~~~~~~~~~h~ef~~dG~-~v~vS~~~~~~ 339 (369)
T PF02239_consen 269 GGGLFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTLKVVKTITPGPGKRVVHMEFNPDGK-EVWVSVWDGNG 339 (369)
T ss_dssp SSS--EE--TT-SEEEEE-TT-SSHT-EEEEECCGTEEEE-HHHHHT--EEEEEE-TTSS-EEEEEEE--TT
T ss_pred CCcceeecCCCCccEEeeccCCCCCceEEEEECcCcceeEEEeccCCCcEeccEECCCCC-EEEEEEecCCC
Confidence 666432 23788888866 4568999999877533332211 001122556777766 48888888774
|
... |
| >KOG4190 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.41 E-value=7.1e-07 Score=98.53 Aligned_cols=246 Identities=15% Similarity=0.139 Sum_probs=141.8
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCCCEEEeeCCCcEEEEeCC
Q 003171 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGDLWSGSEGGGIKIWPWE 270 (842)
Q Consensus 191 ~~~V~~la~dpdg~~LaSGs~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~L~SgS~DgtIrvWd~~ 270 (842)
...|.+++.-.+.+-.+|+|+|.|+|+|.+.... |......+..+.++|+.+|.++.|-.+-+ ..+|-||.|.+||.=
T Consensus 735 ~~~iRai~AidNENSFiSASkDKTVKLWSik~Eg-D~~~tsaCQfTY~aHkk~i~~igfL~~lr-~i~ScD~giHlWDPF 812 (1034)
T KOG4190|consen 735 QEKIRAIAAIDNENSFISASKDKTVKLWSIKPEG-DEIGTSACQFTYQAHKKPIHDIGFLADLR-SIASCDGGIHLWDPF 812 (1034)
T ss_pred HHHhHHHHhcccccceeeccCCceEEEEEecccc-CccccceeeeEhhhccCcccceeeeeccc-eeeeccCcceeeccc
Confidence 5567776654466778899999999999986531 11122235677899999999999988654 345569999999973
Q ss_pred CccceeecCCCceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcCCCCEEEEeC-CCcEEEEEccCCcEEEEee
Q 003171 271 AIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVFN 349 (842)
Q Consensus 271 t~~~~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s-~~tI~lWD~~tg~~l~~l~ 349 (842)
-+...-...-.++ ++. .+.++++-.-+..-.++.++ ..|+++.|.+.++....+.
T Consensus 813 igr~Laq~~dapk----------------~~a--------~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~k 868 (1034)
T KOG4190|consen 813 IGRLLAQMEDAPK----------------EGA--------GGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELK 868 (1034)
T ss_pred ccchhHhhhcCcc----------------cCC--------CceeEecccCcchheeeeccchhhheeeecccccceeeEE
Confidence 2211000000000 100 22345544322221222223 3689999998876543332
Q ss_pred cCCceEeeeecccCCCcccccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEeecCccccCCCceEEEEECC
Q 003171 350 IDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSI 429 (842)
Q Consensus 350 ~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~al~~s~ 429 (842)
.-. . ...+..+.+++..+
T Consensus 869 Vcn--------------------------a------------------------------------~~Pna~~R~iaVa~ 886 (1034)
T KOG4190|consen 869 VCN--------------------------A------------------------------------PGPNALTRAIAVAD 886 (1034)
T ss_pred ecc--------------------------C------------------------------------CCCchheeEEEecc
Confidence 100 0 01122344566666
Q ss_pred CCc-EEEEeCCCeEEEEcC-CCCeeeeeecCCccEEEE-EecCCEEEEEecCcEEEE-EeCC-CcccccccccccCEEEE
Q 003171 430 DGM-IWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQCL-CTFGSQIWVGYMNGIVQV-LDLE-GNLLGGWVAHSSPVIKM 504 (842)
Q Consensus 430 dg~-l~Sgs~DgtIrlWD~-~g~~l~~l~~H~~~V~sl-s~dG~~LasGs~DgtIrl-WD~~-g~~i~~l~gH~~~V~sl 504 (842)
.|. ++.|-.+|+|.+-|. +|+.+..+..-......+ ++..+.|+....|.++-| |-.- |......+....+..=+
T Consensus 887 ~GN~lAa~LSnGci~~LDaR~G~vINswrpmecdllqlaapsdq~L~~saldHslaVnWhaldgimh~q~kpppepahfl 966 (1034)
T KOG4190|consen 887 KGNKLAAALSNGCIAILDARNGKVINSWRPMECDLLQLAAPSDQALAQSALDHSLAVNWHALDGIMHLQDKPPPEPAHFL 966 (1034)
T ss_pred CcchhhHHhcCCcEEEEecCCCceeccCCcccchhhhhcCchhHHHHhhcccceeEeeehhcCCeeeeccCCCCcchhhh
Confidence 665 777888999999999 888776665433444444 456678888778989988 8743 54333333333322222
Q ss_pred EeCCCEEEEEcCCCCeeecc
Q 003171 505 AVGAGYIFTLANHGGIRGWN 524 (842)
Q Consensus 505 a~dg~~l~S~S~DgtIrvWd 524 (842)
..-|-.++++-+-+.++++.
T Consensus 967 qsvgpSLV~a~~Gn~lgVYa 986 (1034)
T KOG4190|consen 967 QSVGPSLVTAQNGNILGVYA 986 (1034)
T ss_pred hccCceeEEeccCcEEEEEe
Confidence 22233455555555555553
|
|
| >PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A | Back alignment and domain information |
|---|
Probab=98.40 E-value=0.00029 Score=79.35 Aligned_cols=97 Identities=13% Similarity=0.173 Sum_probs=65.0
Q ss_pred ecCCCEEEEeCCCCccccccccccccCCCCCCCCCCeeeeee-cCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccC
Q 003171 148 GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVK-GVSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLD 226 (842)
Q Consensus 148 ~~D~~vrvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~V~~la~dpdg~~LaSGs~DGtIrlWdl~~g~~~ 226 (842)
..++.|.|.|.++...... +. +..+-..++++|||++++..+.||.|-++|+.+.
T Consensus 13 ~~~~~v~viD~~t~~~~~~---------------------i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~--- 68 (369)
T PF02239_consen 13 RGSGSVAVIDGATNKVVAR---------------------IPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATG--- 68 (369)
T ss_dssp GGGTEEEEEETTT-SEEEE---------------------EE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSS---
T ss_pred cCCCEEEEEECCCCeEEEE---------------------EcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcc---
Confidence 4578999999876443221 11 1222234678999999999999999999999996
Q ss_pred CCCCcceeEEecccCCcEEEEEEecCCC-EE-EeeCCCcEEEEeCCCccc
Q 003171 227 SDDGFGEVLSWQAHRGPVLSLCISSYGD-LW-SGSEGGGIKIWPWEAIEK 274 (842)
Q Consensus 227 ~~~~~~~~~~l~gH~~~V~slafs~dG~-L~-SgS~DgtIrvWd~~t~~~ 274 (842)
+.+.+.+.-. .-.++++|+||+ ++ +...++++.++|.++.+.
T Consensus 69 -----~~v~~i~~G~-~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~ 112 (369)
T PF02239_consen 69 -----KVVATIKVGG-NPRGIAVSPDGKYVYVANYEPGTVSVIDAETLEP 112 (369)
T ss_dssp -----SEEEEEE-SS-EEEEEEE--TTTEEEEEEEETTEEEEEETTT--E
T ss_pred -----cEEEEEecCC-CcceEEEcCCCCEEEEEecCCCceeEeccccccc
Confidence 5566665433 357899999998 44 566899999999987553
|
... |
| >KOG4547 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.39 E-value=6.1e-06 Score=92.99 Aligned_cols=95 Identities=22% Similarity=0.309 Sum_probs=77.1
Q ss_pred CcEEEEeCCCeEEEEcC-CCCeeeeeecCCccEEEE--EecCCEEEEEecCcEEEEEeCC-CcccccccccccCEEEEEe
Q 003171 431 GMIWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQCL--CTFGSQIWVGYMNGIVQVLDLE-GNLLGGWVAHSSPVIKMAV 506 (842)
Q Consensus 431 g~l~Sgs~DgtIrlWD~-~g~~l~~l~~H~~~V~sl--s~dG~~LasGs~DgtIrlWD~~-g~~i~~l~gH~~~V~sla~ 506 (842)
|.|.|++.|+.+..|+. +++.++.+.+....+.++ ++||+.+++|| +.|++||.+ ++.+.+|+||.++|.++++
T Consensus 115 ~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~D~~~l~~as--~~ik~~~~~~kevv~~ftgh~s~v~t~~f 192 (541)
T KOG4547|consen 115 GCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCISPDGKILLTAS--RQIKVLDIETKEVVITFTGHGSPVRTLSF 192 (541)
T ss_pred CceEecCCceeEEEEecccceeeeeeccCCCccceEEEcCCCCEEEecc--ceEEEEEccCceEEEEecCCCcceEEEEE
Confidence 45889999999999999 688888888877777765 56888998864 689999998 6789999999999999874
Q ss_pred --C-----CCEEE-EEcCCCCeeeccccC
Q 003171 507 --G-----AGYIF-TLANHGGIRGWNVTS 527 (842)
Q Consensus 507 --d-----g~~l~-S~S~DgtIrvWd~~~ 527 (842)
+ |.+++ ++..+..|.+|-+..
T Consensus 193 ~~~~~g~~G~~vLssa~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 193 TTLIDGIIGKYVLSSAAAERGITVWVVEK 221 (541)
T ss_pred EEeccccccceeeeccccccceeEEEEEc
Confidence 3 55655 566777888897654
|
|
| >PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins | Back alignment and domain information |
|---|
Probab=98.39 E-value=2e-06 Score=88.00 Aligned_cols=103 Identities=16% Similarity=0.268 Sum_probs=78.0
Q ss_pred CceEEEEECCCCc-EE--EEeCCCeEEEEcCCCCeeeeeecCCccEEEE--EecCCEEEEEec---CcEEEEEeCC-Ccc
Q 003171 420 RRTEALTTSIDGM-IW--TGGANGLLLQWDPNGNRLQDFQYLPFAVQCL--CTFGSQIWVGYM---NGIVQVLDLE-GNL 490 (842)
Q Consensus 420 ~~v~al~~s~dg~-l~--Sgs~DgtIrlWD~~g~~l~~l~~H~~~V~sl--s~dG~~LasGs~---DgtIrlWD~~-g~~ 490 (842)
..|.+++++|+|. ++ +|..++.|.+||++++.+.++. ...++.+ +|+|++|++|+. .|.|++||++ .+.
T Consensus 60 ~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~~~~i~~~~--~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~ 137 (194)
T PF08662_consen 60 GPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVKGKKIFSFG--TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKK 137 (194)
T ss_pred CceEEEEECcCCCEEEEEEccCCcccEEEcCcccEeEeec--CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEE
Confidence 3588999999987 43 4556789999999988887774 4566666 578999999874 4779999997 456
Q ss_pred cccccccccCEEEEE--eCCCEEEEEcC------CCCeeecccc
Q 003171 491 LGGWVAHSSPVIKMA--VGAGYIFTLAN------HGGIRGWNVT 526 (842)
Q Consensus 491 i~~l~gH~~~V~sla--~dg~~l~S~S~------DgtIrvWd~~ 526 (842)
+.+.. |.. +..++ +||+++++++. |++++||++.
T Consensus 138 i~~~~-~~~-~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~ 179 (194)
T PF08662_consen 138 ISTFE-HSD-ATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQ 179 (194)
T ss_pred eeccc-cCc-EEEEEEcCCCCEEEEEEeccceeccccEEEEEec
Confidence 66654 333 45555 68999998764 8899999974
|
|
| >KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=98.38 E-value=8.8e-06 Score=85.57 Aligned_cols=142 Identities=14% Similarity=0.172 Sum_probs=96.7
Q ss_pred ecCCCCCccccCceeEEEEecCCEEEEecCCCEEEEeCC-CCccccc--ccc-----------ccc------cCCCC---
Q 003171 121 VKPHPLRETQIGCFLRTIVCTEEQLWAGGENGLRVWNLK-ELYDESE--SDS-----------VSV------SKSKG--- 177 (842)
Q Consensus 121 ~~~~~~~~~~~~~~~~~l~~~~~~l~~~~D~~vrvWdl~-~~~~~~~--~~~-----------~~~------~~~~~--- 177 (842)
.+..+.-|..-...++++....+.+.+--++.|.||.+. +.....+ +++ +.. |-+.|
T Consensus 83 ~k~~~i~el~f~~~I~~V~l~r~riVvvl~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~LafPg~k~GqvQ 162 (346)
T KOG2111|consen 83 LKERCIIELSFNSEIKAVKLRRDRIVVVLENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLLAFPGFKTGQVQ 162 (346)
T ss_pred ccCcEEEEEEeccceeeEEEcCCeEEEEecCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceEEEcCCCccceEE
Confidence 334444554555567778778888888889999999874 2211100 000 000 11223
Q ss_pred ------CCCCCCeeeeeecCCCeEEEEEcCCCCEEEEEeCCCc-EEEEECCCCccCCCCCcceeEEec-cc-CCcEEEEE
Q 003171 178 ------EDGTAPFKESVKGVSSVMCMVGDEASGVVWSGHRDGR-IMCWKMNARLLDSDDGFGEVLSWQ-AH-RGPVLSLC 248 (842)
Q Consensus 178 ------~~~~~~~~~~~~g~~~V~~la~dpdg~~LaSGs~DGt-IrlWdl~~g~~~~~~~~~~~~~l~-gH-~~~V~sla 248 (842)
....+|..=..| .+.|.|++.+-+|.+|||+|..|| |||||..+| ..+..++ |- ...|.+|+
T Consensus 163 i~dL~~~~~~~p~~I~AH-~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g--------~~l~E~RRG~d~A~iy~ia 233 (346)
T KOG2111|consen 163 IVDLASTKPNAPSIINAH-DSDIACVALNLQGTLVATASTKGTLIRIFDTEDG--------TLLQELRRGVDRADIYCIA 233 (346)
T ss_pred EEEhhhcCcCCceEEEcc-cCceeEEEEcCCccEEEEeccCcEEEEEEEcCCC--------cEeeeeecCCchheEEEEE
Confidence 111133322344 789999999999999999999998 899999998 4555553 32 45799999
Q ss_pred EecCCC-EEEeeCCCcEEEEeCCC
Q 003171 249 ISSYGD-LWSGSEGGGIKIWPWEA 271 (842)
Q Consensus 249 fs~dG~-L~SgS~DgtIrvWd~~t 271 (842)
|||++. |+.+|+-|||.|+.+..
T Consensus 234 FSp~~s~LavsSdKgTlHiF~l~~ 257 (346)
T KOG2111|consen 234 FSPNSSWLAVSSDKGTLHIFSLRD 257 (346)
T ss_pred eCCCccEEEEEcCCCeEEEEEeec
Confidence 999998 67888889999998854
|
|
| >KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=98.38 E-value=9.7e-05 Score=77.91 Aligned_cols=72 Identities=17% Similarity=0.318 Sum_probs=59.1
Q ss_pred cCCCceEEEEECCCCc-EEEEeCCCe-EEEEcC-CCCeeeeeecCC--ccEEEEEe--cCCEEEEEecCcEEEEEeCCC
Q 003171 417 DDNRRTEALTTSIDGM-IWTGGANGL-LLQWDP-NGNRLQDFQYLP--FAVQCLCT--FGSQIWVGYMNGIVQVLDLEG 488 (842)
Q Consensus 417 ~~~~~v~al~~s~dg~-l~Sgs~Dgt-IrlWD~-~g~~l~~l~~H~--~~V~sls~--dG~~LasGs~DgtIrlWD~~g 488 (842)
.|...|.+++.+-+|. +||+|..|| ||+||. +|+.++++.-.. ..|+|+++ ++.+|+++|.-|||.|+.+..
T Consensus 179 AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp~~s~LavsSdKgTlHiF~l~~ 257 (346)
T KOG2111|consen 179 AHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFSPNSSWLAVSSDKGTLHIFSLRD 257 (346)
T ss_pred cccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEEEeCCCccEEEEEcCCCeEEEEEeec
Confidence 3556677888888898 789999997 799999 899999987433 35888865 688999999999999999763
|
|
| >TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB | Back alignment and domain information |
|---|
Probab=98.37 E-value=5.2e-05 Score=86.69 Aligned_cols=98 Identities=18% Similarity=0.141 Sum_probs=57.6
Q ss_pred EECCCCc-EEEEeC-CC--eEEEEcCCCCeeeeeecCCccEE--EEEecCCEEEEEecCc---EEEEEeCCCcccccccc
Q 003171 426 TTSIDGM-IWTGGA-NG--LLLQWDPNGNRLQDFQYLPFAVQ--CLCTFGSQIWVGYMNG---IVQVLDLEGNLLGGWVA 496 (842)
Q Consensus 426 ~~s~dg~-l~Sgs~-Dg--tIrlWD~~g~~l~~l~~H~~~V~--sls~dG~~LasGs~Dg---tIrlWD~~g~~i~~l~g 496 (842)
.++|||+ |+..+. ++ .|.+||+.+...+.+..+...+. .++++|++|+.++.++ .|.+||+.+...+.+..
T Consensus 284 ~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~~l~~~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~~~l~~ 363 (417)
T TIGR02800 284 SWSPDGKSIAFTSDRGGSPQIYMMDADGGEVRRLTFRGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGERVLTD 363 (417)
T ss_pred EECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecCCCCccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCeEEccC
Confidence 4566765 544443 22 57778885444444544444444 4567899998888765 88999987543333332
Q ss_pred cccCE-EEEEeCCCEEEEEcCCCCeeec
Q 003171 497 HSSPV-IKMAVGAGYIFTLANHGGIRGW 523 (842)
Q Consensus 497 H~~~V-~sla~dg~~l~S~S~DgtIrvW 523 (842)
+.... .++++|++.|+..+.++....+
T Consensus 364 ~~~~~~p~~spdg~~l~~~~~~~~~~~l 391 (417)
T TIGR02800 364 TGLDESPSFAPNGRMILYATTRGGRGVL 391 (417)
T ss_pred CCCCCCceECCCCCEEEEEEeCCCcEEE
Confidence 21111 1345788888877776654433
|
The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear. |
| >PRK02889 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.37 E-value=6e-05 Score=86.81 Aligned_cols=96 Identities=18% Similarity=0.102 Sum_probs=54.5
Q ss_pred EEECCCCc-EEEEeC-CCeEEEEcC--CCCeeeee--ecCCccEEEEEecCCEEEEEecCc---EEEEEeCCCccccccc
Q 003171 425 LTTSIDGM-IWTGGA-NGLLLQWDP--NGNRLQDF--QYLPFAVQCLCTFGSQIWVGYMNG---IVQVLDLEGNLLGGWV 495 (842)
Q Consensus 425 l~~s~dg~-l~Sgs~-DgtIrlWD~--~g~~l~~l--~~H~~~V~sls~dG~~LasGs~Dg---tIrlWD~~g~~i~~l~ 495 (842)
..++|||+ |+..+. +|...+|.+ .+...+.+ .++...-.++++||++|+..+.++ .|.+||+.+...+.+.
T Consensus 289 ~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt~~g~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~lt 368 (427)
T PRK02889 289 PFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQRVTFTGSYNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQVTALT 368 (427)
T ss_pred eEEcCCCCEEEEEecCCCCcEEEEEECCCCceEEEecCCCCcCceEECCCCCEEEEEEccCCcEEEEEEECCCCCeEEcc
Confidence 45788887 554443 456666654 44333333 222122235678999998776543 6999998743223332
Q ss_pred cc-ccCEEEEEeCCCEEEEEcCCCCe
Q 003171 496 AH-SSPVIKMAVGAGYIFTLANHGGI 520 (842)
Q Consensus 496 gH-~~~V~sla~dg~~l~S~S~DgtI 520 (842)
.+ ...-.+.++||+.|+.++.++.-
T Consensus 369 ~~~~~~~p~~spdg~~l~~~~~~~g~ 394 (427)
T PRK02889 369 DTTRDESPSFAPNGRYILYATQQGGR 394 (427)
T ss_pred CCCCccCceECCCCCEEEEEEecCCC
Confidence 22 12222345789888877765543
|
|
| >KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.36 E-value=2.2e-05 Score=83.20 Aligned_cols=281 Identities=15% Similarity=0.191 Sum_probs=139.1
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEecccC------------CcEEEEEEecCCC---E
Q 003171 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHR------------GPVLSLCISSYGD---L 255 (842)
Q Consensus 191 ~~~V~~la~dpdg~~LaSGs~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~------------~~V~slafs~dG~---L 255 (842)
..-+.|+.|+..|.+||||..+|.|.++.-+... ...+.-...+|.|. ..|..+.+.+++. +
T Consensus 25 adiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~---~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~F 101 (433)
T KOG1354|consen 25 ADIISAVEFDHYGERLATGDKGGRVVLFEREKLY---KGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEF 101 (433)
T ss_pred hcceeeEEeecccceEeecCCCCeEEEeeccccc---ccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEE
Confidence 4468899999999999999999999998644321 00111223355564 3588888888875 4
Q ss_pred EEeeCCCcEEEEeCCCcccee---ecCC--CceeeeEE--EEeeceeecccceeccce-eeeecCCEEEEEEcCCCCEEE
Q 003171 256 WSGSEGGGIKIWPWEAIEKAL---SLKP--EERHTAAL--IVERSYIDLRSHLSVNGF-SSILTSDIKNLLSDHSRAKVW 327 (842)
Q Consensus 256 ~SgS~DgtIrvWd~~t~~~~l---~~~~--~~~~~~~l--~~~~s~~~l~~~~~~~~~-~~~~s~~v~~las~~~~~~v~ 327 (842)
+....|+|||+|.+....... .+.. ......++ .+.... ++--....-.+ ...+.-.+.++...++...+.
T Consensus 102 LlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~-~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~l 180 (433)
T KOG1354|consen 102 LLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRH-DLEVEASPRRVYANAHTYHINSISVNSDKETFL 180 (433)
T ss_pred EEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccc-cceeeeeeeeeccccceeEeeeeeecCccceEe
Confidence 456689999999985421111 0000 00000000 000000 00000000000 011233466777777888888
Q ss_pred EeCCCcEEEEEccC-CcEEEEeecCCc-------eEeeeecccCCCcccccceEEEEEecCCCCccceeeeEeecCcceE
Q 003171 328 SAGFLSFALWDART-RELLKVFNIDGQ-------IENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAI 399 (842)
Q Consensus 328 s~s~~tI~lWD~~t-g~~l~~l~~~~~-------~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~ 399 (842)
|+.|..|.||+++- .+........+. ++++..|++.... +-..+.+ ++ ++.+.+-...++
T Consensus 181 SADdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn-------~f~YSSS-KG----tIrLcDmR~~aL 248 (433)
T KOG1354|consen 181 SADDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCN-------VFVYSSS-KG----TIRLCDMRQSAL 248 (433)
T ss_pred eccceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHcc-------EEEEecC-CC----cEEEeechhhhh
Confidence 98888999999852 222111110000 0111111111000 0011111 00 111111000000
Q ss_pred EecCCcEEEEee----cCccccCCCceEEEEECCCCcEEEEeCCCeEEEEcC--CCCeeeeeecCCc------------c
Q 003171 400 MGAADAVRRVAA----KGGFGDDNRRTEALTTSIDGMIWTGGANGLLLQWDP--NGNRLQDFQYLPF------------A 461 (842)
Q Consensus 400 ~g~~~~v~~v~~----~g~~~~~~~~v~al~~s~dg~l~Sgs~DgtIrlWD~--~g~~l~~l~~H~~------------~ 461 (842)
.-....+..-.. ..-|.+-...|..+.|++.|+.+..-.=-+|++||+ +.+.+.+++-|.. .
T Consensus 249 Cd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryilsRDyltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~ 328 (433)
T KOG1354|consen 249 CDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDYLTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDA 328 (433)
T ss_pred hcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEeccceeEEEeccccCCcceEEeehHhHHHHHHHHhhccc
Confidence 000000000000 001222334677799999998544333368999999 4677777776542 2
Q ss_pred EEE---EEec--CCEEEEEecCcEEEEEeCC
Q 003171 462 VQC---LCTF--GSQIWVGYMNGIVQVLDLE 487 (842)
Q Consensus 462 V~s---ls~d--G~~LasGs~DgtIrlWD~~ 487 (842)
|.. ++.. +.++.+|+...-.+++++.
T Consensus 329 IfdKFec~~sg~~~~v~TGsy~n~frvf~~~ 359 (433)
T KOG1354|consen 329 IFDKFECSWSGNDSYVMTGSYNNVFRVFNLA 359 (433)
T ss_pred hhheeEEEEcCCcceEecccccceEEEecCC
Confidence 221 1334 4599999999999999975
|
|
| >PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins | Back alignment and domain information |
|---|
Probab=98.36 E-value=8.5e-06 Score=83.35 Aligned_cols=113 Identities=14% Similarity=0.211 Sum_probs=78.2
Q ss_pred CCCeEEEEEcCCCCEEEE--EeCCCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCCC-EEEeeC---CCcE
Q 003171 191 VSSVMCMVGDEASGVVWS--GHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSE---GGGI 264 (842)
Q Consensus 191 ~~~V~~la~dpdg~~LaS--Gs~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~---DgtI 264 (842)
.++|.+++++|+|+.++. |..+..|.+||+.. +.+.++. ...++.|.|||+|+ |+.|+. .|.|
T Consensus 59 ~~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~~---------~~i~~~~--~~~~n~i~wsP~G~~l~~~g~~n~~G~l 127 (194)
T PF08662_consen 59 EGPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVKG---------KKIFSFG--TQPRNTISWSPDGRFLVLAGFGNLNGDL 127 (194)
T ss_pred CCceEEEEECcCCCEEEEEEccCCcccEEEcCcc---------cEeEeec--CCCceEEEECCCCCEEEEEEccCCCcEE
Confidence 457999999999988644 55778999999974 5666663 56788999999998 566654 4679
Q ss_pred EEEeCCCccceeecCCCceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcCCCCEEEEeC-------CCcEEEE
Q 003171 265 KIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-------FLSFALW 337 (842)
Q Consensus 265 rvWd~~t~~~~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s-------~~tI~lW 337 (842)
.+||..+.+...... +..+..+.-+|+|..+++++ +.+++||
T Consensus 128 ~~wd~~~~~~i~~~~-------------------------------~~~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw 176 (194)
T PF08662_consen 128 EFWDVRKKKKISTFE-------------------------------HSDATDVEWSPDGRYLATATTSPRLRVDNGFKIW 176 (194)
T ss_pred EEEECCCCEEeeccc-------------------------------cCcEEEEEEcCCCCEEEEEEeccceeccccEEEE
Confidence 999997533221111 12234555666666665543 4589999
Q ss_pred EccCCcEEE
Q 003171 338 DARTRELLK 346 (842)
Q Consensus 338 D~~tg~~l~ 346 (842)
+.. |+++.
T Consensus 177 ~~~-G~~l~ 184 (194)
T PF08662_consen 177 SFQ-GRLLY 184 (194)
T ss_pred Eec-CeEeE
Confidence 984 65544
|
|
| >TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL | Back alignment and domain information |
|---|
Probab=98.34 E-value=0.00013 Score=82.44 Aligned_cols=96 Identities=19% Similarity=0.164 Sum_probs=66.8
Q ss_pred CCcEEEEeCCCeEEEEcC-CCCeeeeeecCCccEEEEEecCCEEEEEecCcEEEEEeCC-Ccccccccc-cccCEEEEEe
Q 003171 430 DGMIWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQCLCTFGSQIWVGYMNGIVQVLDLE-GNLLGGWVA-HSSPVIKMAV 506 (842)
Q Consensus 430 dg~l~Sgs~DgtIrlWD~-~g~~l~~l~~H~~~V~sls~dG~~LasGs~DgtIrlWD~~-g~~i~~l~g-H~~~V~sla~ 506 (842)
++.++.++.+|.+..||. +|+.+-.... ........++.+|+.++.||.|..+|.. |+.+-.... ....+.+...
T Consensus 241 ~~~vy~~~~~g~l~a~d~~tG~~~W~~~~--~~~~~p~~~~~~vyv~~~~G~l~~~d~~tG~~~W~~~~~~~~~~ssp~i 318 (377)
T TIGR03300 241 GGQVYAVSYQGRVAALDLRSGRVLWKRDA--SSYQGPAVDDNRLYVTDADGVVVALDRRSGSELWKNDELKYRQLTAPAV 318 (377)
T ss_pred CCEEEEEEcCCEEEEEECCCCcEEEeecc--CCccCceEeCCEEEEECCCCeEEEEECCCCcEEEccccccCCccccCEE
Confidence 567888888999999999 7876654432 1122345678899999999999999986 765432211 1112233334
Q ss_pred CCCEEEEEcCCCCeeeccccC
Q 003171 507 GAGYIFTLANHGGIRGWNVTS 527 (842)
Q Consensus 507 dg~~l~S~S~DgtIrvWd~~~ 527 (842)
.+..++.++.||.|.+||..+
T Consensus 319 ~g~~l~~~~~~G~l~~~d~~t 339 (377)
T TIGR03300 319 VGGYLVVGDFEGYLHWLSRED 339 (377)
T ss_pred ECCEEEEEeCCCEEEEEECCC
Confidence 577899999999999998654
|
Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ. |
| >KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.29 E-value=6.1e-05 Score=87.86 Aligned_cols=93 Identities=13% Similarity=0.100 Sum_probs=68.5
Q ss_pred EEEEeCCCeEEE---EcCC--C----CeeeeeecCCccEEEEEe--cCC-EEEEEecCcEEEEEeCC--Ccccccccccc
Q 003171 433 IWTGGANGLLLQ---WDPN--G----NRLQDFQYLPFAVQCLCT--FGS-QIWVGYMNGIVQVLDLE--GNLLGGWVAHS 498 (842)
Q Consensus 433 l~Sgs~DgtIrl---WD~~--g----~~l~~l~~H~~~V~sls~--dG~-~LasGs~DgtIrlWD~~--g~~i~~l~gH~ 498 (842)
++.|+.+|.|.- ++.+ . +.+..+..|.++|+++.. -+. .+.+++ |-+|+||... ..++..+.-|.
T Consensus 363 FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~g-DW~vriWs~~~~~~Pl~~~~~~~ 441 (555)
T KOG1587|consen 363 FIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVG-DWTVRIWSEDVIASPLLSLDSSP 441 (555)
T ss_pred EEEEcCCcEEEEEeccCCcccccccccccccccccCcceEeeecCCCccceeeeec-cceeEeccccCCCCcchhhhhcc
Confidence 667777776644 2232 1 234466678999999964 344 455544 9999999865 45788888999
Q ss_pred cCEEEEEeCC---CEEEEEcCCCCeeecccc
Q 003171 499 SPVIKMAVGA---GYIFTLANHGGIRGWNVT 526 (842)
Q Consensus 499 ~~V~sla~dg---~~l~S~S~DgtIrvWd~~ 526 (842)
+.|+++++.+ ..++++..||.|-+||+.
T Consensus 442 ~~v~~vaWSptrpavF~~~d~~G~l~iWDLl 472 (555)
T KOG1587|consen 442 DYVTDVAWSPTRPAVFATVDGDGNLDIWDLL 472 (555)
T ss_pred ceeeeeEEcCcCceEEEEEcCCCceehhhhh
Confidence 9999999754 468899999999999974
|
|
| >PRK04792 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.28 E-value=6.2e-05 Score=87.17 Aligned_cols=73 Identities=14% Similarity=-0.000 Sum_probs=48.4
Q ss_pred CCCeEEEEEcCCCCEEEEEeCC-C--cEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCCC-EE-EeeCCCc--
Q 003171 191 VSSVMCMVGDEASGVVWSGHRD-G--RIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LW-SGSEGGG-- 263 (842)
Q Consensus 191 ~~~V~~la~dpdg~~LaSGs~D-G--tIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~-SgS~Dgt-- 263 (842)
..++.+..|+|||+.|+..+.+ + .|.+||+.++. ...+..+.+ ...+.+|||||+ |+ +.+.++.
T Consensus 217 ~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~------~~~lt~~~g---~~~~~~wSPDG~~La~~~~~~g~~~ 287 (448)
T PRK04792 217 PEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQV------REKVTSFPG---INGAPRFSPDGKKLALVLSKDGQPE 287 (448)
T ss_pred CCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCC------eEEecCCCC---CcCCeeECCCCCEEEEEEeCCCCeE
Confidence 4467889999999988876643 3 47788888762 011222333 345689999998 64 6677776
Q ss_pred EEEEeCCCc
Q 003171 264 IKIWPWEAI 272 (842)
Q Consensus 264 IrvWd~~t~ 272 (842)
|.+||++++
T Consensus 288 Iy~~dl~tg 296 (448)
T PRK04792 288 IYVVDIATK 296 (448)
T ss_pred EEEEECCCC
Confidence 666676553
|
|
| >PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide | Back alignment and domain information |
|---|
Probab=98.28 E-value=2e-06 Score=63.41 Aligned_cols=37 Identities=32% Similarity=0.575 Sum_probs=34.2
Q ss_pred ceeEEecccCCcEEEEEEecCCC-EEEeeCCCcEEEEe
Q 003171 232 GEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWP 268 (842)
Q Consensus 232 ~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd 268 (842)
++..++++|.++|++|+|+|++. |+|||.|++|++||
T Consensus 2 ~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 2 KCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred eEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 46788999999999999999987 78999999999997
|
WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g .... |
| >KOG2139 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.25 E-value=0.00036 Score=74.74 Aligned_cols=114 Identities=18% Similarity=0.265 Sum_probs=77.2
Q ss_pred CCEEEEecCCCEEEEeCCCCccccccccccccCCCCCCCCCCeeeeeecCCCeEEEEEcCCCCEEEEEeCCC-cEEEEEC
Q 003171 142 EEQLWAGGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGHRDG-RIMCWKM 220 (842)
Q Consensus 142 ~~~l~~~~D~~vrvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~V~~la~dpdg~~LaSGs~DG-tIrlWdl 220 (842)
...|.++.-++|-+|........+..++ +-+..++.. ++.+ |..+|++|.+.+||..++++|.+. .|+|||.
T Consensus 153 aselavgCr~gIciW~~s~tln~~r~~~-~~s~~~~qv----l~~p--gh~pVtsmqwn~dgt~l~tAS~gsssi~iWdp 225 (445)
T KOG2139|consen 153 ASELAVGCRAGICIWSDSRTLNANRNIR-MMSTHHLQV----LQDP--GHNPVTSMQWNEDGTILVTASFGSSSIMIWDP 225 (445)
T ss_pred cceeeeeecceeEEEEcCcccccccccc-cccccchhh----eeCC--CCceeeEEEEcCCCCEEeecccCcceEEEEcC
Confidence 3466678888999998754322211001 001111111 2222 357999999999999999999765 7999999
Q ss_pred CCCccCCCCCcceeEEecccCCcEEEEEEecCCC-EEEeeCCCcEEEEeCC
Q 003171 221 NARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWE 270 (842)
Q Consensus 221 ~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~~ 270 (842)
+++. ...+.++| -+.++-+.|||||. |+.++-|++.|||+..
T Consensus 226 dtg~-------~~pL~~~g-lgg~slLkwSPdgd~lfaAt~davfrlw~e~ 268 (445)
T KOG2139|consen 226 DTGQ-------KIPLIPKG-LGGFSLLKWSPDGDVLFAATCDAVFRLWQEN 268 (445)
T ss_pred CCCC-------cccccccC-CCceeeEEEcCCCCEEEEecccceeeeehhc
Confidence 9973 11222233 46788999999998 7899999999999653
|
|
| >PRK00178 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.25 E-value=0.00014 Score=83.85 Aligned_cols=73 Identities=12% Similarity=-0.007 Sum_probs=50.8
Q ss_pred CCCeEEEEEcCCCCEEEEEeCC-C--cEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCCC-EE-EeeCCC--c
Q 003171 191 VSSVMCMVGDEASGVVWSGHRD-G--RIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LW-SGSEGG--G 263 (842)
Q Consensus 191 ~~~V~~la~dpdg~~LaSGs~D-G--tIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~-SgS~Dg--t 263 (842)
..++....++|||+.|+..+.+ + .|.+|++.++. ...+....+.+.+.+|||||+ |+ +.+.++ .
T Consensus 198 ~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~---------~~~l~~~~g~~~~~~~SpDG~~la~~~~~~g~~~ 268 (430)
T PRK00178 198 REPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGR---------REQITNFEGLNGAPAWSPDGSKLAFVLSKDGNPE 268 (430)
T ss_pred CCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCC---------EEEccCCCCCcCCeEECCCCCEEEEEEccCCCce
Confidence 4578889999999988776654 2 58888998862 222333334556789999997 54 666665 5
Q ss_pred EEEEeCCCc
Q 003171 264 IKIWPWEAI 272 (842)
Q Consensus 264 IrvWd~~t~ 272 (842)
|.+||+.++
T Consensus 269 Iy~~d~~~~ 277 (430)
T PRK00178 269 IYVMDLASR 277 (430)
T ss_pred EEEEECCCC
Confidence 777788664
|
|
| >PF03372 Exo_endo_phos: Endonuclease/Exonuclease/phosphatase family Subset of Pfam family Subset of Pfam family; InterPro: IPR005135 This domain is found in a large number of proteins including magnesium dependent endonucleases and phosphatases involved in intracellular signalling [] | Back alignment and domain information |
|---|
Probab=98.21 E-value=2e-06 Score=89.40 Aligned_cols=61 Identities=21% Similarity=0.258 Sum_probs=38.5
Q ss_pred eeeEEEEEEeccccCccCceeeceeecccC---cccCCCCeeEEEEEEeCeEEEEEeecCcCCcch
Q 003171 642 AGLLIAVWVRKNLKDYVGDVDVAAVPCGFG---RAIGNKGAVGLRVRVYDRIMCFVNCHFAAHLEA 704 (842)
Q Consensus 642 ~g~~l~vf~r~~~~~~i~~v~~~~v~~G~~---~~~gnKG~v~i~~~i~~~~~~Fv~~HLaa~~~~ 704 (842)
.+..++|+.|.++...+..........+.. ....+++.+.+++. +..|+++|+|+.+....
T Consensus 72 ~~~g~~i~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~v~~~H~~~~~~~ 135 (249)
T PF03372_consen 72 GGYGVAILSRSPIFSSVSYVFSLFSKPGIRIFRRSSKSKGIVPVSIN--GKPITVVNVHLPSSNDE 135 (249)
T ss_dssp SSEEEEEEESSCCCEEEEEEEEEESSSTTCEEEEEEEEEEEEEEEEE--TEEEEEEEEETTSHHHH
T ss_pred cCceEEEEEcccccccccccccccccccccccccccccccccccccc--ceEEEeeeccccccchh
Confidence 457788999998754433333222222221 12346677777766 99999999999985433
|
Proteins this domain is found in include: AP endonuclease proteins (4.2.99.18 from EC), DNase I proteins (3.1.21.1 from EC), Synaptojanin an inositol-1,4,5-trisphosphate phosphatase (3.1.3.56 from EC) and Sphingomyelinase (3.1.4.12 from EC).; PDB: 2J63_A 2JC4_A 3TEB_B 3MTC_A 3N9V_B 1ZWX_A 2F1N_A 1Y21_A 1NTF_A 2IMQ_X .... |
| >KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.21 E-value=7.3e-06 Score=101.59 Aligned_cols=215 Identities=19% Similarity=0.252 Sum_probs=136.7
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEec-ccCCcEEEEEEecCCC-EEEeeCCCcEEEEe
Q 003171 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQ-AHRGPVLSLCISSYGD-LWSGSEGGGIKIWP 268 (842)
Q Consensus 191 ~~~V~~la~dpdg~~LaSGs~DGtIrlWdl~~g~~~~~~~~~~~~~l~-gH~~~V~slafs~dG~-L~SgS~DgtIrvWd 268 (842)
...|.|+.-.|-.-+-.||+.||.||+|....+ +.+.+|+ +-...|+.+.|+..|. ...+-.||-+-+|.
T Consensus 2208 v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~--------~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q 2279 (2439)
T KOG1064|consen 2208 VENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHG--------QQVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQ 2279 (2439)
T ss_pred cCceeeecCCCCCceEEecCCCceEEEEeccCC--------CeEEEeeccCcchhhhhhhcccCCceeeeccCCceeecc
Confidence 346888888888888999999999999998876 5566663 2237899999999986 66677899999999
Q ss_pred CCCccceeecCCCceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcCCCCEEEEeC----CCcEEEEEccCCcE
Q 003171 269 WEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG----FLSFALWDARTREL 344 (842)
Q Consensus 269 ~~t~~~~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s----~~tI~lWD~~tg~~ 344 (842)
... +.+.. .+.|. ....+.+++.+ .+++++ ++.+.+||.--
T Consensus 2280 ~~p--k~~~s------------------~qchn-------k~~~Df~Fi~s-----~~~tag~s~d~~n~~lwDtl~--- 2324 (2439)
T KOG1064|consen 2280 ASP--KPYTS------------------WQCHN-------KALSDFRFIGS-----LLATAGRSSDNRNVCLWDTLL--- 2324 (2439)
T ss_pred cCC--cceec------------------cccCC-------ccccceeeeeh-----hhhccccCCCCCcccchhccc---
Confidence 852 11111 01110 00123444431 122221 24677887421
Q ss_pred EEEeecCCceEeeeecccCCCcccccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEeecCccccCCCceEE
Q 003171 345 LKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEA 424 (842)
Q Consensus 345 l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~a 424 (842)
.+.. +.+. ..|.+.++.
T Consensus 2325 -----~~~~---------------------s~v~-------------------------------------~~H~~gaT~ 2341 (2439)
T KOG1064|consen 2325 -----PPMN---------------------SLVH-------------------------------------TCHDGGATV 2341 (2439)
T ss_pred -----Cccc---------------------ceee-------------------------------------eecCCCceE
Confidence 0000 0000 123445567
Q ss_pred EEECCCCc-EEEEeCCCeEEEEcC-CCCeeeeeecCCccEEEEEecCCEEEEEecCcEEEEEeCCC-ccccccc---ccc
Q 003171 425 LTTSIDGM-IWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQCLCTFGSQIWVGYMNGIVQVLDLEG-NLLGGWV---AHS 498 (842)
Q Consensus 425 l~~s~dg~-l~Sgs~DgtIrlWD~-~g~~l~~l~~H~~~V~sls~dG~~LasGs~DgtIrlWD~~g-~~i~~l~---gH~ 498 (842)
+++.|.-+ ++||+.+|.|++||+ ..+.+++++. +. --.++.+|+..|.|+||++.+ .++.++. +|.
T Consensus 2342 l~~~P~~qllisggr~G~v~l~D~rqrql~h~~~~-------~~-~~~~f~~~ss~g~ikIw~~s~~~ll~~~p~e~ak~ 2413 (2439)
T KOG1064|consen 2342 LAYAPKHQLLISGGRKGEVCLFDIRQRQLRHTFQA-------LD-TREYFVTGSSEGNIKIWRLSEFGLLHTFPSEHAKQ 2413 (2439)
T ss_pred EEEcCcceEEEecCCcCcEEEeehHHHHHHHHhhh-------hh-hhheeeccCcccceEEEEccccchhhcCchhhccc
Confidence 77888877 789999999999999 4566666653 21 234899999999999999874 4555543 344
Q ss_pred cCEE----EEEe-CCCEEEEEcCCCC
Q 003171 499 SPVI----KMAV-GAGYIFTLANHGG 519 (842)
Q Consensus 499 ~~V~----sla~-dg~~l~S~S~Dgt 519 (842)
+.-. .+.. ...+|+|+++|++
T Consensus 2414 gfFr~~g~Q~~v~~~nrifsCgad~~ 2439 (2439)
T KOG1064|consen 2414 GFFRNIGMQINVGQCNRIFSCGADGT 2439 (2439)
T ss_pred chhhhcCceeeeccCceEEEecCCCC
Confidence 4311 1222 3567889999875
|
|
| >KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.21 E-value=9.8e-06 Score=92.80 Aligned_cols=72 Identities=11% Similarity=0.118 Sum_probs=51.7
Q ss_pred eEEEEEcCC---CCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCCC--EEEeeCCCcEEEEe
Q 003171 194 VMCMVGDEA---SGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD--LWSGSEGGGIKIWP 268 (842)
Q Consensus 194 V~~la~dpd---g~~LaSGs~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~--L~SgS~DgtIrvWd 268 (842)
|-.+.++|. ...+++-+...+| +|++.... +. .....+-||+.+|+.+.|.|... |+++|-|..+..||
T Consensus 70 vad~qws~h~a~~~wiVsts~qkai-iwnlA~ss----~~-aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd 143 (1081)
T KOG0309|consen 70 VADVQWSPHPAKPYWIVSTSNQKAI-IWNLAKSS----SN-AIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWD 143 (1081)
T ss_pred hcceecccCCCCceeEEecCcchhh-hhhhhcCC----cc-ceEEEEecCccceeccccCCCCCcceeeccccccceeee
Confidence 444555553 2466666666665 89988752 11 22345679999999999998754 78999999999999
Q ss_pred CCC
Q 003171 269 WEA 271 (842)
Q Consensus 269 ~~t 271 (842)
+.+
T Consensus 144 ~rS 146 (1081)
T KOG0309|consen 144 MRS 146 (1081)
T ss_pred ccC
Confidence 965
|
|
| >KOG2321 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.18 E-value=0.00013 Score=81.95 Aligned_cols=283 Identities=14% Similarity=0.129 Sum_probs=154.0
Q ss_pred CCeEEEEEcCCCCE-EEEEeCCCcEEEEECCCCccCCCCCcceeEEecccC--CcEEEEEEecCC-CEEEeeCCCcEEEE
Q 003171 192 SSVMCMVGDEASGV-VWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHR--GPVLSLCISSYG-DLWSGSEGGGIKIW 267 (842)
Q Consensus 192 ~~V~~la~dpdg~~-LaSGs~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~--~~V~slafs~dG-~L~SgS~DgtIrvW 267 (842)
..-+.+.++|||++ +|||.+--.||++|+.. ..+.+.-|. ..|.=..+|.|- +++---.|.+|-+-
T Consensus 52 ~ast~ik~s~DGqY~lAtG~YKP~ikvydlan----------LSLKFERhlDae~V~feiLsDD~SK~v~L~~DR~IefH 121 (703)
T KOG2321|consen 52 TASTRIKVSPDGQYLLATGTYKPQIKVYDLAN----------LSLKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFH 121 (703)
T ss_pred cccceeEecCCCcEEEEecccCCceEEEEccc----------ceeeeeecccccceeEEEeccchhhheEeecCceeeeh
Confidence 34566888999986 56788999999999976 356677774 345444444442 35555567777554
Q ss_pred eCCCccceeecCCCceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcCCCCEEEE-eCCCcEEEEEccCCcEEE
Q 003171 268 PWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWS-AGFLSFALWDARTRELLK 346 (842)
Q Consensus 268 d~~t~~~~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s-~s~~tI~lWD~~tg~~l~ 346 (842)
..-+....+.... ..+.+.......-+.+ |+...|.-.++..|.++.
T Consensus 122 ak~G~hy~~RIP~--------------------------------~GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~ 169 (703)
T KOG2321|consen 122 AKYGRHYRTRIPK--------------------------------FGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLN 169 (703)
T ss_pred hhcCeeeeeecCc--------------------------------CCccccccCCCccEEEeecCcceEEEEcccccccc
Confidence 4322111111110 0111222111221222 233467888999999988
Q ss_pred EeecCCceEeeeecccCCCcccccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEeecCccccCCCceEEEE
Q 003171 347 VFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALT 426 (842)
Q Consensus 347 ~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~al~ 426 (842)
-|.......+.+.+....... .- +...+.+.||+......++.-+....++. .........|+++.
T Consensus 170 P~~~~~~~lN~v~in~~hgLl---------a~----Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s-~pg~~~~~svTal~ 235 (703)
T KOG2321|consen 170 PFETDSGELNVVSINEEHGLL---------AC----GTEDGVVEFWDPRDKSRVGTLDAASSVNS-HPGGDAAPSVTALK 235 (703)
T ss_pred ccccccccceeeeecCccceE---------Ee----cccCceEEEecchhhhhheeeecccccCC-CccccccCcceEEE
Confidence 776654433333333211110 00 01112344554321112222111111110 01112234589999
Q ss_pred ECCCCc-EEEEeCCCeEEEEcC-CCCeeeeeecCCc--cEEEEEe---c-CCEEEEEecCcEEEEEeCC-Cccccccccc
Q 003171 427 TSIDGM-IWTGGANGLLLQWDP-NGNRLQDFQYLPF--AVQCLCT---F-GSQIWVGYMNGIVQVLDLE-GNLLGGWVAH 497 (842)
Q Consensus 427 ~s~dg~-l~Sgs~DgtIrlWD~-~g~~l~~l~~H~~--~V~sls~---d-G~~LasGs~DgtIrlWD~~-g~~i~~l~gH 497 (842)
|+.||. ++.|+.+|.|.++|+ +.+.+. ...|.+ +|..|.. + +..|+|. ....++|||-. |+.......-
T Consensus 236 F~d~gL~~aVGts~G~v~iyDLRa~~pl~-~kdh~~e~pi~~l~~~~~~~q~~v~S~-Dk~~~kiWd~~~Gk~~asiEpt 313 (703)
T KOG2321|consen 236 FRDDGLHVAVGTSTGSVLIYDLRASKPLL-VKDHGYELPIKKLDWQDTDQQNKVVSM-DKRILKIWDECTGKPMASIEPT 313 (703)
T ss_pred ecCCceeEEeeccCCcEEEEEcccCCcee-ecccCCccceeeecccccCCCceEEec-chHHhhhcccccCCceeecccc
Confidence 999997 899999999999999 444432 234544 5666644 2 3466664 56799999975 7766555432
Q ss_pred ccCEEEE--EeCCCEEEEEcCCCCeeeccccCCCCCcc
Q 003171 498 SSPVIKM--AVGAGYIFTLANHGGIRGWNVTSPGPLDS 533 (842)
Q Consensus 498 ~~~V~sl--a~dg~~l~S~S~DgtIrvWd~~~~~~~d~ 533 (842)
..|+.+ .+++.++++|-.+.-+-.+=+..-+|.-.
T Consensus 314 -~~lND~C~~p~sGm~f~Ane~~~m~~yyiP~LGPaPr 350 (703)
T KOG2321|consen 314 -SDLNDFCFVPGSGMFFTANESSKMHTYYIPSLGPAPR 350 (703)
T ss_pred -CCcCceeeecCCceEEEecCCCcceeEEccccCCCch
Confidence 235544 46777888887776666555544444433
|
|
| >KOG3881 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.17 E-value=8.3e-05 Score=80.28 Aligned_cols=210 Identities=16% Similarity=0.236 Sum_probs=128.9
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCCC-E-EEeeCC--CcEEE
Q 003171 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-L-WSGSEG--GGIKI 266 (842)
Q Consensus 191 ~~~V~~la~dpdg~~LaSGs~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L-~SgS~D--gtIrv 266 (842)
+.+|..++.. ...|.++-.+|.+.+|....+. ........|+-| .++..|--++... + ++|+.. .-+++
T Consensus 105 ~~~I~gl~~~--dg~Litc~~sG~l~~~~~k~~d----~hss~l~~la~g-~g~~~~r~~~~~p~Iva~GGke~~n~lki 177 (412)
T KOG3881|consen 105 TKSIKGLKLA--DGTLITCVSSGNLQVRHDKSGD----LHSSKLIKLATG-PGLYDVRQTDTDPYIVATGGKENINELKI 177 (412)
T ss_pred cccccchhhc--CCEEEEEecCCcEEEEeccCCc----cccccceeeecC-CceeeeccCCCCCceEecCchhcccceee
Confidence 6677777765 3677889999999999987541 001223334333 4566666665433 4 679998 89999
Q ss_pred EeCCCccceeecCCCceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcCCCCEEEEeC-CCcEEEEEccCCcE-
Q 003171 267 WPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTREL- 344 (842)
Q Consensus 267 Wd~~t~~~~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s-~~tI~lWD~~tg~~- 344 (842)
||++..++.++....... ..+++-. +...+++++--++ ..++++++ +..+++||.+.+..
T Consensus 178 wdle~~~qiw~aKNvpnD---------~L~LrVP--------vW~tdi~Fl~g~~-~~~fat~T~~hqvR~YDt~~qRRP 239 (412)
T KOG3881|consen 178 WDLEQSKQIWSAKNVPND---------RLGLRVP--------VWITDIRFLEGSP-NYKFATITRYHQVRLYDTRHQRRP 239 (412)
T ss_pred eecccceeeeeccCCCCc---------cccceee--------eeeccceecCCCC-CceEEEEecceeEEEecCcccCcc
Confidence 999876544433211110 0111111 1122333332222 44555555 56788888875432
Q ss_pred EEEeecCCceEeeeecccCCCcccccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEeecCccccCCCceEE
Q 003171 345 LKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEA 424 (842)
Q Consensus 345 l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~a 424 (842)
+..|. |. ...+.+
T Consensus 240 V~~fd-----------------------------------------~~--------------------------E~~is~ 252 (412)
T KOG3881|consen 240 VAQFD-----------------------------------------FL--------------------------ENPISS 252 (412)
T ss_pred eeEec-----------------------------------------cc--------------------------cCccee
Confidence 11110 00 112334
Q ss_pred EEECCCCc-EEEEeCCCeEEEEcC-CCCeeee-eecCCccEEEEEec--CCEEEEEecCcEEEEEeCCC-cccc
Q 003171 425 LTTSIDGM-IWTGGANGLLLQWDP-NGNRLQD-FQYLPFAVQCLCTF--GSQIWVGYMNGIVQVLDLEG-NLLG 492 (842)
Q Consensus 425 l~~s~dg~-l~Sgs~DgtIrlWD~-~g~~l~~-l~~H~~~V~sls~d--G~~LasGs~DgtIrlWD~~g-~~i~ 492 (842)
+...|+|. +++|..-|.+..+|+ .++.+.. |.+-++.|.+|-.+ +++|++++.|+.|||+|++. +++.
T Consensus 253 ~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tGsirsih~hp~~~~las~GLDRyvRIhD~ktrkll~ 326 (412)
T KOG3881|consen 253 TGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGLKGITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKLLH 326 (412)
T ss_pred eeecCCCcEEEEecccchhheecccCceeeccccCCccCCcceEEEcCCCceEEeeccceeEEEeecccchhhh
Confidence 45556666 788888899999999 5666655 78888899999664 45999999999999999985 5443
|
|
| >KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.17 E-value=1.4e-05 Score=99.31 Aligned_cols=91 Identities=19% Similarity=0.260 Sum_probs=71.7
Q ss_pred CCCeEEEEcC--CC--CeeeeeecCCccEEEEEe--cCCEEEEEecCcEEEEEeCC-CcccccccccccCEEEEEeCCCE
Q 003171 438 ANGLLLQWDP--NG--NRLQDFQYLPFAVQCLCT--FGSQIWVGYMNGIVQVLDLE-GNLLGGWVAHSSPVIKMAVGAGY 510 (842)
Q Consensus 438 ~DgtIrlWD~--~g--~~l~~l~~H~~~V~sls~--dG~~LasGs~DgtIrlWD~~-g~~i~~l~gH~~~V~sla~dg~~ 510 (842)
.++.+.+||. .+ .++. +.|...+++++. .-+.|++|+.+|.|+|||+. .+++++|++ +. -..+
T Consensus 2313 d~~n~~lwDtl~~~~~s~v~--~~H~~gaT~l~~~P~~qllisggr~G~v~l~D~rqrql~h~~~~-------~~-~~~~ 2382 (2439)
T KOG1064|consen 2313 DNRNVCLWDTLLPPMNSLVH--TCHDGGATVLAYAPKHQLLISGGRKGEVCLFDIRQRQLRHTFQA-------LD-TREY 2382 (2439)
T ss_pred CCCcccchhcccCcccceee--eecCCCceEEEEcCcceEEEecCCcCcEEEeehHHHHHHHHhhh-------hh-hhhe
Confidence 4678999998 33 3455 789999999865 45589999999999999998 567888876 22 3557
Q ss_pred EEEEcCCCCeeeccccCCCCCcchhhhh
Q 003171 511 IFTLANHGGIRGWNVTSPGPLDSILCKE 538 (842)
Q Consensus 511 l~S~S~DgtIrvWd~~~~~~~d~~l~~~ 538 (842)
+++++..|.|+||++..+.-+..+....
T Consensus 2383 f~~~ss~g~ikIw~~s~~~ll~~~p~e~ 2410 (2439)
T KOG1064|consen 2383 FVTGSSEGNIKIWRLSEFGLLHTFPSEH 2410 (2439)
T ss_pred eeccCcccceEEEEccccchhhcCchhh
Confidence 8999999999999998887776655433
|
|
| >KOG3914 consensus WD repeat protein WDR4 [Function unknown] | Back alignment and domain information |
|---|
Probab=98.11 E-value=1.1e-05 Score=87.31 Aligned_cols=76 Identities=18% Similarity=0.226 Sum_probs=64.5
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEe-cccCCcEEEEEEecCCCEEEeeCCCcEEEEeC
Q 003171 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSW-QAHRGPVLSLCISSYGDLWSGSEGGGIKIWPW 269 (842)
Q Consensus 191 ~~~V~~la~dpdg~~LaSGs~DGtIrlWdl~~g~~~~~~~~~~~~~l-~gH~~~V~slafs~dG~L~SgS~DgtIrvWd~ 269 (842)
-+-++.|+++||++.|.|+.+|..||+=..... .-+.+| .||+.-|..++.-++-.|+|||.|+|||+||+
T Consensus 151 vSml~dVavS~D~~~IitaDRDEkIRvs~ypa~--------f~IesfclGH~eFVS~isl~~~~~LlS~sGD~tlr~Wd~ 222 (390)
T KOG3914|consen 151 VSMLLDVAVSPDDQFIITADRDEKIRVSRYPAT--------FVIESFCLGHKEFVSTISLTDNYLLLSGSGDKTLRLWDI 222 (390)
T ss_pred hhhhheeeecCCCCEEEEecCCceEEEEecCcc--------cchhhhccccHhheeeeeeccCceeeecCCCCcEEEEec
Confidence 668999999999999999999999998665543 223343 69999999999998777999999999999999
Q ss_pred CCccc
Q 003171 270 EAIEK 274 (842)
Q Consensus 270 ~t~~~ 274 (842)
.+++.
T Consensus 223 ~sgk~ 227 (390)
T KOG3914|consen 223 TSGKL 227 (390)
T ss_pred ccCCc
Confidence 88654
|
|
| >KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.08 E-value=0.00093 Score=75.35 Aligned_cols=106 Identities=20% Similarity=0.275 Sum_probs=85.8
Q ss_pred CCceEEEEECCCCc---EEEEeCCCeEEEEcCCCCeeeeeecCCccEEEE--EecCCEEEEEec---CcEEEEEeCC-Cc
Q 003171 419 NRRTEALTTSIDGM---IWTGGANGLLLQWDPNGNRLQDFQYLPFAVQCL--CTFGSQIWVGYM---NGIVQVLDLE-GN 489 (842)
Q Consensus 419 ~~~v~al~~s~dg~---l~Sgs~DgtIrlWD~~g~~l~~l~~H~~~V~sl--s~dG~~LasGs~---DgtIrlWD~~-g~ 489 (842)
.+.|.++.++++|+ ++-|-+--++.++|+.|+.+..|-. ++=+++ ++.|.+|+.++- -|.|.+||+. -+
T Consensus 270 ~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~~~v~df~e--gpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K 347 (566)
T KOG2315|consen 270 EGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRGKPVFDFPE--GPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRK 347 (566)
T ss_pred CCCceEEEECCCCCEEEEEEecccceEEEEcCCCCEeEeCCC--CCccceEECCCCCEEEEeecCCCCCceEEEeccchh
Confidence 56788999999996 3456667789999999999887742 344454 567998888875 5899999987 57
Q ss_pred ccccccccccCEEEEEeCCCEEEEEcC------CCCeeecccc
Q 003171 490 LLGGWVAHSSPVIKMAVGAGYIFTLAN------HGGIRGWNVT 526 (842)
Q Consensus 490 ~i~~l~gH~~~V~sla~dg~~l~S~S~------DgtIrvWd~~ 526 (842)
++..+.+-...+..-.+||++++|+.+ |+++|||++.
T Consensus 348 ~i~~~~a~~tt~~eW~PdGe~flTATTaPRlrvdNg~Kiwhyt 390 (566)
T KOG2315|consen 348 LIAKFKAANTTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYT 390 (566)
T ss_pred hccccccCCceEEEEcCCCcEEEEEeccccEEecCCeEEEEec
Confidence 899999988888888899999998775 7999999964
|
|
| >KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.05 E-value=0.00027 Score=74.73 Aligned_cols=99 Identities=12% Similarity=0.060 Sum_probs=67.1
Q ss_pred ceEEEEECCCCcEEEEeCC---CeEEEEcCCCCeeeeeecCCccEEEEEecC--CEEEEEecCcEEEEEeCCCccccccc
Q 003171 421 RTEALTTSIDGMIWTGGAN---GLLLQWDPNGNRLQDFQYLPFAVQCLCTFG--SQIWVGYMNGIVQVLDLEGNLLGGWV 495 (842)
Q Consensus 421 ~v~al~~s~dg~l~Sgs~D---gtIrlWD~~g~~l~~l~~H~~~V~sls~dG--~~LasGs~DgtIrlWD~~g~~i~~l~ 495 (842)
.+.-++||+|.+.+..-.| +.+.+||+....+...--...+|..+..|. .+|+.......+.+|-..|-......
T Consensus 320 g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~l~avLiQk~piraf~WdP~~prL~vctg~srLY~W~psg~~~V~vP 399 (447)
T KOG4497|consen 320 GAGKLAFSCDSTYAATRNDKYPNALWLWDLQNLKLHAVLIQKHPIRAFEWDPGRPRLVVCTGKSRLYFWAPSGPRVVGVP 399 (447)
T ss_pred ccceeeecCCceEEeeecCCCCceEEEEechhhhhhhhhhhccceeEEEeCCCCceEEEEcCCceEEEEcCCCceEEecC
Confidence 3455899999985544444 479999996555544444567888887663 37888777778999999874322222
Q ss_pred ccccCEEEEEe--CCCEEEEEcCCCC
Q 003171 496 AHSSPVIKMAV--GAGYIFTLANHGG 519 (842)
Q Consensus 496 gH~~~V~sla~--dg~~l~S~S~Dgt 519 (842)
+..-.|.++.+ +|+.++-.+.|.-
T Consensus 400 ~~GF~i~~l~W~~~g~~i~l~~kDaf 425 (447)
T KOG4497|consen 400 KKGFNIQKLQWLQPGEFIVLCGKDAF 425 (447)
T ss_pred CCCceeeeEEecCCCcEEEEEcCCce
Confidence 22356777774 7888888887764
|
|
| >KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown] | Back alignment and domain information |
|---|
Probab=98.04 E-value=0.00025 Score=75.48 Aligned_cols=197 Identities=17% Similarity=0.192 Sum_probs=120.9
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCCC-EEEeeCCCcEEEEeC
Q 003171 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPW 269 (842)
Q Consensus 191 ~~~V~~la~dpdg~~LaSGs~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~ 269 (842)
..++.++.+.++...|+.|-..|++.-..+... -+.....+.+..|...|..+.|+..-+ ++|.+.|+.+ .|-.
T Consensus 68 P~~~~~~~y~~e~~~L~vg~~ngtvtefs~sed----fnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~-~~hc 142 (404)
T KOG1409|consen 68 PSPCSAMEYVSESRRLYVGQDNGTVTEFALSED----FNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQF-AWHC 142 (404)
T ss_pred CCCceEeeeeccceEEEEEEecceEEEEEhhhh----hhhcchhhhhhhhhcceeeEEecCCceeEEEeccccce-EEEe
Confidence 568999999999999999999999988876653 122234566789999999999998766 6789888765 4432
Q ss_pred CCccceeecCCCceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcCCCCEEEEeCCCcEEEEEccCCcEEEEee
Q 003171 270 EAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGFLSFALWDARTRELLKVFN 349 (842)
Q Consensus 270 ~t~~~~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s~~tI~lWD~~tg~~l~~l~ 349 (842)
....+.+ . ++.. ...+....-++.+...+...
T Consensus 143 ~e~~~~l---------g------------~Y~~-~~~~t~~~~d~~~~fvGd~~-------------------------- 174 (404)
T KOG1409|consen 143 TESGNRL---------G------------GYNF-ETPASALQFDALYAFVGDHS-------------------------- 174 (404)
T ss_pred eccCCcc---------c------------ceEe-eccCCCCceeeEEEEecccc--------------------------
Confidence 1100000 0 0000 00000000000100000000
Q ss_pred cCCceEeeeecccCCCcccccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEeecCccccCCCceEEEEECC
Q 003171 350 IDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSI 429 (842)
Q Consensus 350 ~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~al~~s~ 429 (842)
+++ ....+.+..-..+. ++.+|...+.++.+.+
T Consensus 175 --gqv--------------------------------t~lr~~~~~~~~i~-------------~~~~h~~~~~~l~Wd~ 207 (404)
T KOG1409|consen 175 --GQI--------------------------------TMLKLEQNGCQLIT-------------TFNGHTGEVTCLKWDP 207 (404)
T ss_pred --cce--------------------------------EEEEEeecCCceEE-------------EEcCcccceEEEEEcC
Confidence 000 00111111100010 1445667777888877
Q ss_pred CCc-EEEEeCCCeEEEEcCCC--CeeeeeecCCccEEEEEe--cCCEEEEEecCcEEEEEeCC
Q 003171 430 DGM-IWTGGANGLLLQWDPNG--NRLQDFQYLPFAVQCLCT--FGSQIWVGYMNGIVQVLDLE 487 (842)
Q Consensus 430 dg~-l~Sgs~DgtIrlWD~~g--~~l~~l~~H~~~V~sls~--dG~~LasGs~DgtIrlWD~~ 487 (842)
... |.||..|..|.+||+-| ....++.+|.+.|..++. .-+++.|++.||.|.+||.+
T Consensus 208 ~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~~~~t~~l~S~~edg~i~~w~mn 270 (404)
T KOG1409|consen 208 GQRLLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQALSYAQHTRQLISCGEDGGIVVWNMN 270 (404)
T ss_pred CCcEEEeccccCceEEEeccCCcceeeeeccchhhhhhhhhhhhheeeeeccCCCeEEEEecc
Confidence 554 78999999999999954 345677899999998854 45799999999999999975
|
|
| >KOG1334 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.02 E-value=8.7e-05 Score=82.00 Aligned_cols=289 Identities=15% Similarity=0.134 Sum_probs=148.4
Q ss_pred eeEEEEec--CCEEEEe-cCCCEEEEeCCCCccccccccccccCCCCCCCCCCeeeeeecCCCeEEEEEcC--CCCEEEE
Q 003171 134 FLRTIVCT--EEQLWAG-GENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDE--ASGVVWS 208 (842)
Q Consensus 134 ~~~~l~~~--~~~l~~~-~D~~vrvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~V~~la~dp--dg~~LaS 208 (842)
|+.++.+. ++.|..| .|..|-+||-....... ..+ +.| ...|.-..|-| +.+.|++
T Consensus 144 cVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l-------~f~-----------SGH-~~NvfQaKFiP~s~d~ti~~ 204 (559)
T KOG1334|consen 144 CVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKL-------SFE-----------SGH-CNNVFQAKFIPFSGDRTIVT 204 (559)
T ss_pred ccceeeecccCceeeccCccceEEeehhhccCccc-------ccc-----------ccc-ccchhhhhccCCCCCcCcee
Confidence 34444433 4456554 47799999986543321 111 122 33343333433 4578999
Q ss_pred EeCCCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCCC--EEEeeCCCcEEEEeCCCccceeecC---CCce
Q 003171 209 GHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD--LWSGSEGGGIKIWPWEAIEKALSLK---PEER 283 (842)
Q Consensus 209 Gs~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~--L~SgS~DgtIrvWd~~t~~~~l~~~---~~~~ 283 (842)
.+.||.+|+=.+... ..++....+--|.++|..++..|+.- |.|++.|+.++=.|+......-.+. .+..
T Consensus 205 ~s~dgqvr~s~i~~t-----~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~ 279 (559)
T KOG1334|consen 205 SSRDGQVRVSEILET-----GYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEK 279 (559)
T ss_pred ccccCceeeeeeccc-----cceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCc
Confidence 999999998765432 11233445667999999999999864 8999999999988886532211111 1110
Q ss_pred eeeEEEEeeceeecccceeccceeeeecCCEEEEEEcCCCC-EEEEeC-CCcEEEEEccCCc------EEEEeecCCceE
Q 003171 284 HTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRA-KVWSAG-FLSFALWDARTRE------LLKVFNIDGQIE 355 (842)
Q Consensus 284 ~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~-~v~s~s-~~tI~lWD~~tg~------~l~~l~~~~~~~ 355 (842)
... ....++..+... .++.++ +.-++++|.+.-. .++.|-++.-+.
T Consensus 280 ~~v--------------------------~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~ 333 (559)
T KOG1334|consen 280 ERV--------------------------GLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVE 333 (559)
T ss_pred cce--------------------------eeeeEecCCCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccc
Confidence 000 011222333222 222222 3445566654311 123332221110
Q ss_pred ------eeeecccCCCc--ccccceEEEEEecCCCCccceeeeEe---ecCcceEEecCCcEEEEeecCccccCCCceEE
Q 003171 356 ------NRVDMSLLPDF--AMEDEFKTKIVTSSKKDKAQSSFGFF---QRSRNAIMGAADAVRRVAAKGGFGDDNRRTEA 424 (842)
Q Consensus 356 ------~~~~~s~~~~~--~~~~~~~~~~~s~~~~~~~~~s~~~~---~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~a 424 (842)
..+.++..+.- ....+..+-++......... ..... +-.+..+.||.+. ..|..
T Consensus 334 d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~~-p~~~s~~~~~~k~vYKGHrN~--------------~TVKg 398 (559)
T KOG1334|consen 334 DDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDGSE-PDPSSPREQYVKRVYKGHRNS--------------RTVKG 398 (559)
T ss_pred cCcccceeEEecCCccceeeeecccceEEeccccccCCC-CCCCcchhhccchhhcccccc--------------cccce
Confidence 01111110000 00001111112111111100 00000 0001112232211 11222
Q ss_pred EE-ECCC-CcEEEEeCCCeEEEEcC-CCCeeeeeecCCccEEEEEec--CCEEEEEecCcEEEEEeCC
Q 003171 425 LT-TSID-GMIWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQCLCTF--GSQIWVGYMNGIVQVLDLE 487 (842)
Q Consensus 425 l~-~s~d-g~l~Sgs~DgtIrlWD~-~g~~l~~l~~H~~~V~sls~d--G~~LasGs~DgtIrlWD~~ 487 (842)
+- |-|. ..++|||.-|.|-+|+- +++.++-|.+...-|+||-+. -..||+.+-|..||||-..
T Consensus 399 VNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~~MegDr~VVNCLEpHP~~PvLAsSGid~DVKIWTP~ 466 (559)
T KOG1334|consen 399 VNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIRFMEGDRHVVNCLEPHPHLPVLASSGIDHDVKIWTPL 466 (559)
T ss_pred eeeccCccceEEecCccceEEEEecchhHHHHHhhcccceEeccCCCCCCchhhccCCccceeeecCC
Confidence 22 3343 34889999999999999 689999999877789999875 4589999999999999863
|
|
| >KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.01 E-value=0.00029 Score=78.63 Aligned_cols=125 Identities=13% Similarity=0.038 Sum_probs=85.3
Q ss_pred cceEEecCCcEEEEee-cC----ccccCCCceEEEEECCCCc-EEEEeCCCeEEEEcC-CCCeeeeeecCCccEEEEEe-
Q 003171 396 RNAIMGAADAVRRVAA-KG----GFGDDNRRTEALTTSIDGM-IWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQCLCT- 467 (842)
Q Consensus 396 ~~~~~g~~~~v~~v~~-~g----~~~~~~~~v~al~~s~dg~-l~Sgs~DgtIrlWD~-~g~~l~~l~~H~~~V~sls~- 467 (842)
...++...||+..+|. .| ++......|.++++.|+.. ++-+-. +.+.+=.+ ....+-..+.|.+-|.|+..
T Consensus 117 tgLlt~GEDG~iKiWSrsGMLRStl~Q~~~~v~c~~W~p~S~~vl~c~g-~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~ 195 (737)
T KOG1524|consen 117 AGLLTAGEDGVIKIWSRSGMLRSTVVQNEESIRCARWAPNSNSIVFCQG-GHISIKPLAANSKIIRWRAHDGLVLSLSWS 195 (737)
T ss_pred ceeeeecCCceEEEEeccchHHHHHhhcCceeEEEEECCCCCceEEecC-CeEEEeecccccceeEEeccCcEEEEeecC
Confidence 3345556677777776 33 2334456788888888876 443332 33444444 23334456788888888864
Q ss_pred -cCCEEEEEecCcEEEEEeCCCcccccccccccCEEEEEeCCCEEEEEcCCCCee
Q 003171 468 -FGSQIWVGYMNGIVQVLDLEGNLLGGWVAHSSPVIKMAVGAGYIFTLANHGGIR 521 (842)
Q Consensus 468 -dG~~LasGs~DgtIrlWD~~g~~i~~l~gH~~~V~sla~dg~~l~S~S~DgtIr 521 (842)
....|++|+.|-..+|||.-|+.+-+-..|.-+|++|++.+..++..+.-+++|
T Consensus 196 ~~s~lI~sgGED~kfKvWD~~G~~Lf~S~~~ey~ITSva~npd~~~~v~S~nt~R 250 (737)
T KOG1524|consen 196 TQSNIIASGGEDFRFKIWDAQGANLFTSAAEEYAITSVAFNPEKDYLLWSYNTAR 250 (737)
T ss_pred ccccceeecCCceeEEeecccCcccccCChhccceeeeeeccccceeeeeeeeee
Confidence 466899999999999999888888888889999999987666665555555666
|
|
| >KOG2321 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.01 E-value=0.00036 Score=78.56 Aligned_cols=131 Identities=22% Similarity=0.397 Sum_probs=90.3
Q ss_pred EEecCCcEEEEee-cCccc----cCCCceEEEEECCC-CcEEEEeCCCeEEEEcC-CCCeeeeeec------CCc-----
Q 003171 399 IMGAADAVRRVAA-KGGFG----DDNRRTEALTTSID-GMIWTGGANGLLLQWDP-NGNRLQDFQY------LPF----- 460 (842)
Q Consensus 399 ~~g~~~~v~~v~~-~g~~~----~~~~~v~al~~s~d-g~l~Sgs~DgtIrlWD~-~g~~l~~l~~------H~~----- 460 (842)
+.|+...|+|++. .|.|. -+...+.++.+.+- |.|+.|+.||.|-.||. ......++.. |.+
T Consensus 150 ~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~ 229 (703)
T KOG2321|consen 150 LVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAP 229 (703)
T ss_pred EeecCcceEEEEccccccccccccccccceeeeecCccceEEecccCceEEEecchhhhhheeeecccccCCCccccccC
Confidence 5566778999986 45544 35577888888775 45778888999999999 4555555442 333
Q ss_pred cEEEEEec--CCEEEEEecCcEEEEEeCCC-c-ccccccccccCEEEEEe---C-CCEEEEEcCCCCeeeccccCCCC
Q 003171 461 AVQCLCTF--GSQIWVGYMNGIVQVLDLEG-N-LLGGWVAHSSPVIKMAV---G-AGYIFTLANHGGIRGWNVTSPGP 530 (842)
Q Consensus 461 ~V~sls~d--G~~LasGs~DgtIrlWD~~g-~-~i~~l~gH~~~V~sla~---d-g~~l~S~S~DgtIrvWd~~~~~~ 530 (842)
.|++++++ |-.+++|+..|.|.|+|+.. + ++..-.+-.-+|..+.+ + ...++|. .-..+||||-.+..+
T Consensus 230 svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~~~q~~v~S~-Dk~~~kiWd~~~Gk~ 306 (703)
T KOG2321|consen 230 SVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKDHGYELPIKKLDWQDTDQQNKVVSM-DKRILKIWDECTGKP 306 (703)
T ss_pred cceEEEecCCceeEEeeccCCcEEEEEcccCCceeecccCCccceeeecccccCCCceEEec-chHHhhhcccccCCc
Confidence 38888873 67999999999999999973 4 34444455567888875 2 2345554 344789999554433
|
|
| >PLN02919 haloacid dehalogenase-like hydrolase family protein | Back alignment and domain information |
|---|
Probab=98.00 E-value=0.0019 Score=82.18 Aligned_cols=258 Identities=13% Similarity=0.080 Sum_probs=137.5
Q ss_pred EEEEEcCC-CCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEecc--------------cCCcEEEEEEecCCC-EE-E
Q 003171 195 MCMVGDEA-SGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQA--------------HRGPVLSLCISSYGD-LW-S 257 (842)
Q Consensus 195 ~~la~dpd-g~~LaSGs~DGtIrlWdl~~g~~~~~~~~~~~~~l~g--------------H~~~V~slafs~dG~-L~-S 257 (842)
..+++|++ +.+.++-+..+.|++||..+. .+..+.+ +-..-..|++++++. |+ +
T Consensus 571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~G~---------~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVa 641 (1057)
T PLN02919 571 GKLAIDLLNNRLFISDSNHNRIVVTDLDGN---------FIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVA 641 (1057)
T ss_pred ceEEEECCCCeEEEEECCCCeEEEEeCCCC---------EEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEE
Confidence 35788875 557777778889999998763 2222211 112247899999876 55 4
Q ss_pred eeCCCcEEEEeCCCccceeecCCCceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcCCCCEEEEe--CCCcEE
Q 003171 258 GSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSA--GFLSFA 335 (842)
Q Consensus 258 gS~DgtIrvWd~~t~~~~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~--s~~tI~ 335 (842)
-.....|+++|+.++.- .++...... ..+..+. ....... -..-..+++++.+..++.+ ....|+
T Consensus 642 Dt~n~~Ir~id~~~~~V-~tlag~G~~---------g~~~~gg-~~~~~~~--ln~P~gVa~dp~~g~LyVad~~~~~I~ 708 (1057)
T PLN02919 642 DTENHALREIDFVNETV-RTLAGNGTK---------GSDYQGG-KKGTSQV--LNSPWDVCFEPVNEKVYIAMAGQHQIW 708 (1057)
T ss_pred eCCCceEEEEecCCCEE-EEEeccCcc---------cCCCCCC-hhhhHhh--cCCCeEEEEecCCCeEEEEECCCCeEE
Confidence 44567899999865321 111000000 0000000 0000000 0112346666644444443 246799
Q ss_pred EEEccCCcEEEEeecCCceEeeeecccCCCcccccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEeecCcc
Q 003171 336 LWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGF 415 (842)
Q Consensus 336 lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~ 415 (842)
+||..++.. .++.+++.... ..+. . + .
T Consensus 709 v~d~~~g~v-~~~~G~G~~~~--------------------~~g~----~---------------~-------------~ 735 (1057)
T PLN02919 709 EYNISDGVT-RVFSGDGYERN--------------------LNGS----S---------------G-------------T 735 (1057)
T ss_pred EEECCCCeE-EEEecCCcccc--------------------CCCC----c---------------c-------------c
Confidence 999988764 34433221100 0000 0 0 0
Q ss_pred ccCCCceEEEEECCCCc-EE-EEeCCCeEEEEcC-CCCeeeeeec--------------CC--------ccEEEE--Eec
Q 003171 416 GDDNRRTEALTTSIDGM-IW-TGGANGLLLQWDP-NGNRLQDFQY--------------LP--------FAVQCL--CTF 468 (842)
Q Consensus 416 ~~~~~~v~al~~s~dg~-l~-Sgs~DgtIrlWD~-~g~~l~~l~~--------------H~--------~~V~sl--s~d 468 (842)
.........++++|+|. |+ +-+.++.|++||+ ++.. ..+.+ +. ..-..+ .++
T Consensus 736 ~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~-~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~d 814 (1057)
T PLN02919 736 STSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGS-RLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKD 814 (1057)
T ss_pred cccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcE-EEEEecccccCcccccccCCCCchhhhhccCCceeeEeCC
Confidence 00011234578888876 65 4456789999998 4432 11110 00 011233 456
Q ss_pred CCEEEEEecCcEEEEEeCCCcccccccc--------------cccCEEEEE--eCCCEEEEEcCCCCeeeccccCC
Q 003171 469 GSQIWVGYMNGIVQVLDLEGNLLGGWVA--------------HSSPVIKMA--VGAGYIFTLANHGGIRGWNVTSP 528 (842)
Q Consensus 469 G~~LasGs~DgtIrlWD~~g~~i~~l~g--------------H~~~V~sla--~dg~~l~S~S~DgtIrvWd~~~~ 528 (842)
|...++-+.+++|++||.++..+.++.+ +-.....|+ .+|+.+++-+.++.||+||+.+.
T Consensus 815 G~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~~~ 890 (1057)
T PLN02919 815 GQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDLNKG 890 (1057)
T ss_pred CcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEECCCC
Confidence 7766666779999999987544333322 122345555 57888888889999999998653
|
|
| >PRK11138 outer membrane biogenesis protein BamB; Provisional | Back alignment and domain information |
|---|
Probab=97.99 E-value=0.0031 Score=71.81 Aligned_cols=96 Identities=18% Similarity=0.209 Sum_probs=62.7
Q ss_pred CCCcEEEEeCCCeEEEEcC-CCCeeeeeecCCc-cEEEEEecCCEEEEEecCcEEEEEeCC-CcccccccccccCEEE-E
Q 003171 429 IDGMIWTGGANGLLLQWDP-NGNRLQDFQYLPF-AVQCLCTFGSQIWVGYMNGIVQVLDLE-GNLLGGWVAHSSPVIK-M 504 (842)
Q Consensus 429 ~dg~l~Sgs~DgtIrlWD~-~g~~l~~l~~H~~-~V~sls~dG~~LasGs~DgtIrlWD~~-g~~i~~l~gH~~~V~s-l 504 (842)
.+++++.++.+|.|...|. +|+.+=....-.. ...+....+.+|+.++.||.|.+.|.+ |+.+....-+...+.+ .
T Consensus 293 ~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~sp~v~~g~l~v~~~~G~l~~ld~~tG~~~~~~~~~~~~~~s~P 372 (394)
T PRK11138 293 DGGRIYLVDQNDRVYALDTRGGVELWSQSDLLHRLLTAPVLYNGYLVVGDSEGYLHWINREDGRFVAQQKVDSSGFLSEP 372 (394)
T ss_pred ECCEEEEEcCCCeEEEEECCCCcEEEcccccCCCcccCCEEECCEEEEEeCCCEEEEEECCCCCEEEEEEcCCCcceeCC
Confidence 3567888888999999999 6765322211011 112223357788999999999999986 7776555433333433 2
Q ss_pred EeCCCEEEEEcCCCCeeecc
Q 003171 505 AVGAGYIFTLANHGGIRGWN 524 (842)
Q Consensus 505 a~dg~~l~S~S~DgtIrvWd 524 (842)
...++.|+-++.||.|..++
T Consensus 373 ~~~~~~l~v~t~~G~l~~~~ 392 (394)
T PRK11138 373 VVADDKLLIQARDGTVYAIT 392 (394)
T ss_pred EEECCEEEEEeCCceEEEEe
Confidence 33455788889999887654
|
|
| >PRK00178 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=97.95 E-value=0.0015 Score=75.26 Aligned_cols=93 Identities=14% Similarity=0.060 Sum_probs=49.9
Q ss_pred EEECCCCc-EEEEe-CCC--eEEEEcC-CCCeeee-eecCCccEEEEEecCCEEEEEec-Cc--EEEEEeCCCccccccc
Q 003171 425 LTTSIDGM-IWTGG-ANG--LLLQWDP-NGNRLQD-FQYLPFAVQCLCTFGSQIWVGYM-NG--IVQVLDLEGNLLGGWV 495 (842)
Q Consensus 425 l~~s~dg~-l~Sgs-~Dg--tIrlWD~-~g~~l~~-l~~H~~~V~sls~dG~~LasGs~-Dg--tIrlWD~~g~~i~~l~ 495 (842)
..++|||. |+..+ .++ .|.++|+ .|+..+. +.++.....++++||++|+..+. ++ .|.+||+.+...+.+.
T Consensus 292 ~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt~~~~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~~lt 371 (430)
T PRK00178 292 PFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERVTFVGNYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSVRILT 371 (430)
T ss_pred eEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecCCCCccceEECCCCCEEEEEEccCCceEEEEEECCCCCEEEcc
Confidence 34667776 54433 233 5777788 4543221 22322333456789998887664 33 5888998743222222
Q ss_pred -ccccCEEEEEeCCCEEEEEcCC
Q 003171 496 -AHSSPVIKMAVGAGYIFTLANH 517 (842)
Q Consensus 496 -gH~~~V~sla~dg~~l~S~S~D 517 (842)
...+.-.++++||+.++-.+.+
T Consensus 372 ~~~~~~~p~~spdg~~i~~~~~~ 394 (430)
T PRK00178 372 DTSLDESPSVAPNGTMLIYATRQ 394 (430)
T ss_pred CCCCCCCceECCCCCEEEEEEec
Confidence 1111112456788887755543
|
|
| >KOG4547 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.95 E-value=0.00026 Score=80.24 Aligned_cols=121 Identities=11% Similarity=0.109 Sum_probs=87.2
Q ss_pred CCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEe--cccCCcEEEEEEecCC-CEEEeeCCCcEEEEeCCCccceeec
Q 003171 202 ASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSW--QAHRGPVLSLCISSYG-DLWSGSEGGGIKIWPWEAIEKALSL 278 (842)
Q Consensus 202 dg~~LaSGs~DGtIrlWdl~~g~~~~~~~~~~~~~l--~gH~~~V~slafs~dG-~L~SgS~DgtIrvWd~~t~~~~l~~ 278 (842)
|-.+|+-|...|.|-+++...| +....+ -.|.+.|+++..+.+- -|.|++.|+.+-+|+.....- ++.
T Consensus 69 ~t~~lvlgt~~g~v~~ys~~~g--------~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~-~~~ 139 (541)
T KOG4547|consen 69 DTSMLVLGTPQGSVLLYSVAGG--------EITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVI-IRI 139 (541)
T ss_pred CceEEEeecCCccEEEEEecCC--------eEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEeccccee-eee
Confidence 3457999999999999999887 333334 4799999999877654 489999999999999855221 110
Q ss_pred CCCceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcCCCCEEEEeCCCcEEEEEccCCcEEEEeecCCceEeee
Q 003171 279 KPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGFLSFALWDARTRELLKVFNIDGQIENRV 358 (842)
Q Consensus 279 ~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s~~tI~lWD~~tg~~l~~l~~~~~~~~~~ 358 (842)
++. ....+..++.++++..+.+++ +.|++||+++++.+.+|.+|+..+..+
T Consensus 140 ------------------~~~----------~~~~~~sl~is~D~~~l~~as-~~ik~~~~~~kevv~~ftgh~s~v~t~ 190 (541)
T KOG4547|consen 140 ------------------WKE----------QKPLVSSLCISPDGKILLTAS-RQIKVLDIETKEVVITFTGHGSPVRTL 190 (541)
T ss_pred ------------------ecc----------CCCccceEEEcCCCCEEEecc-ceEEEEEccCceEEEEecCCCcceEEE
Confidence 000 123344566666666666554 789999999999999999998765544
Q ss_pred ec
Q 003171 359 DM 360 (842)
Q Consensus 359 ~~ 360 (842)
.+
T Consensus 191 ~f 192 (541)
T KOG4547|consen 191 SF 192 (541)
T ss_pred EE
Confidence 43
|
|
| >PLN02919 haloacid dehalogenase-like hydrolase family protein | Back alignment and domain information |
|---|
Probab=97.95 E-value=0.0045 Score=78.78 Aligned_cols=275 Identities=13% Similarity=0.118 Sum_probs=139.2
Q ss_pred EEEec--CCEEEEe--cCCCEEEEeCCCCccccccccccccCCCCCCCCCCeeeeeecCCCeEEEEEcCCCCEEEEEe-C
Q 003171 137 TIVCT--EEQLWAG--GENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGH-R 211 (842)
Q Consensus 137 ~l~~~--~~~l~~~--~D~~vrvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~V~~la~dpdg~~LaSGs-~ 211 (842)
-++.+ ++.+|++ ..+.|++||......... +..+..|-.+ .++.. .. -+.-..++++++++.|+.+. .
T Consensus 572 gvavd~~~g~lyVaDs~n~rI~v~d~~G~~i~~i----g~~g~~G~~d-G~~~~-a~-f~~P~GIavd~~gn~LYVaDt~ 644 (1057)
T PLN02919 572 KLAIDLLNNRLFISDSNHNRIVVTDLDGNFIVQI----GSTGEEGLRD-GSFED-AT-FNRPQGLAYNAKKNLLYVADTE 644 (1057)
T ss_pred eEEEECCCCeEEEEECCCCeEEEEeCCCCEEEEE----ccCCCcCCCC-Cchhc-cc-cCCCcEEEEeCCCCEEEEEeCC
Confidence 34444 5678874 467899999854321110 0001111000 01100 00 12346789999888766655 4
Q ss_pred CCcEEEEECCCCccCCCCCcceeEEecc--c---------------CCcEEEEEEec-CCCE-EEeeCCCcEEEEeCCCc
Q 003171 212 DGRIMCWKMNARLLDSDDGFGEVLSWQA--H---------------RGPVLSLCISS-YGDL-WSGSEGGGIKIWPWEAI 272 (842)
Q Consensus 212 DGtIrlWdl~~g~~~~~~~~~~~~~l~g--H---------------~~~V~slafs~-dG~L-~SgS~DgtIrvWd~~t~ 272 (842)
.+.|+++|..++ .+.++.| . -+.-..|+|+| +|.| ++.+.++.|++||..++
T Consensus 645 n~~Ir~id~~~~---------~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g 715 (1057)
T PLN02919 645 NHALREIDFVNE---------TVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDG 715 (1057)
T ss_pred CceEEEEecCCC---------EEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCC
Confidence 567999998774 2333311 0 01225799999 5665 57778899999998654
Q ss_pred cceeecCCCceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcCCCCEEEEeC--CCcEEEEEccCCcEEEEeec
Q 003171 273 EKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG--FLSFALWDARTRELLKVFNI 350 (842)
Q Consensus 273 ~~~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s--~~tI~lWD~~tg~~l~~l~~ 350 (842)
... .+..... .. ...+. ...... -.....++.++++..|+.+. .+.|++||+.++.......+
T Consensus 716 ~v~-~~~G~G~-~~---------~~~g~--~~~~~~--~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg 780 (1057)
T PLN02919 716 VTR-VFSGDGY-ER---------NLNGS--SGTSTS--FAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGG 780 (1057)
T ss_pred eEE-EEecCCc-cc---------cCCCC--cccccc--ccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEec
Confidence 211 1111000 00 00000 000000 01233466777776555544 36899999988764221111
Q ss_pred CCceEeeeecccCCCcccccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEeecCccccCCCceEEEEECCC
Q 003171 351 DGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSID 430 (842)
Q Consensus 351 ~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~al~~s~d 430 (842)
.... +. ... .| |..++... ...+ .....++++++
T Consensus 781 ~~~~------~~-~l~-----------------------~f---------G~~dG~g~---~~~l----~~P~Gvavd~d 814 (1057)
T PLN02919 781 DPTF------SD-NLF-----------------------KF---------GDHDGVGS---EVLL----QHPLGVLCAKD 814 (1057)
T ss_pred cccc------Cc-ccc-----------------------cc---------cCCCCchh---hhhc----cCCceeeEeCC
Confidence 1000 00 000 00 00000000 0001 11236788899
Q ss_pred CcEE-EEeCCCeEEEEcCCCCeeeeeecCC--------------ccEEEE--EecCCEEEEEecCcEEEEEeCCC
Q 003171 431 GMIW-TGGANGLLLQWDPNGNRLQDFQYLP--------------FAVQCL--CTFGSQIWVGYMNGIVQVLDLEG 488 (842)
Q Consensus 431 g~l~-Sgs~DgtIrlWD~~g~~l~~l~~H~--------------~~V~sl--s~dG~~LasGs~DgtIrlWD~~g 488 (842)
|.++ +-+.++.|++||.++..+.++.+.. .....+ .++|+.+++-+.+++|++||++.
T Consensus 815 G~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~~ 889 (1057)
T PLN02919 815 GQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDLNK 889 (1057)
T ss_pred CcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEECCC
Confidence 9864 5557889999999654444443311 123344 45687666767899999999874
|
|
| >PRK04792 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=97.89 E-value=0.002 Score=74.65 Aligned_cols=93 Identities=11% Similarity=0.045 Sum_probs=48.1
Q ss_pred EEECCCCc-EEEEe-CCC--eEEEEcCCCCeeeee--ecCCccEEEEEecCCEEEEEec-Cc--EEEEEeCCCccccccc
Q 003171 425 LTTSIDGM-IWTGG-ANG--LLLQWDPNGNRLQDF--QYLPFAVQCLCTFGSQIWVGYM-NG--IVQVLDLEGNLLGGWV 495 (842)
Q Consensus 425 l~~s~dg~-l~Sgs-~Dg--tIrlWD~~g~~l~~l--~~H~~~V~sls~dG~~LasGs~-Dg--tIrlWD~~g~~i~~l~ 495 (842)
..++|||+ |+..+ .++ .|.++|+.+...+.+ .++...-.++++||++|+..+. ++ .|.++|+.+...+.+.
T Consensus 311 p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt~~g~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~~lt 390 (448)
T PRK04792 311 PSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRLTFEGEQNLGGSITPDGRSMIMVNRTNGKFNIARQDLETGAMQVLT 390 (448)
T ss_pred eEECCCCCEEEEEECCCCCceEEEEECCCCCEEEEecCCCCCcCeeECCCCCEEEEEEecCCceEEEEEECCCCCeEEcc
Confidence 45677776 44333 233 466667743333333 3322222356789998877654 44 4555687643323332
Q ss_pred cc-ccCEEEEEeCCCEEEEEcCC
Q 003171 496 AH-SSPVIKMAVGAGYIFTLANH 517 (842)
Q Consensus 496 gH-~~~V~sla~dg~~l~S~S~D 517 (842)
.. .+.--++++||+.++..+.+
T Consensus 391 ~~~~d~~ps~spdG~~I~~~~~~ 413 (448)
T PRK04792 391 STRLDESPSVAPNGTMVIYSTTY 413 (448)
T ss_pred CCCCCCCceECCCCCEEEEEEec
Confidence 22 11112456788887755543
|
|
| >PRK11756 exonuclease III; Provisional | Back alignment and domain information |
|---|
Probab=97.89 E-value=4.3e-05 Score=82.27 Aligned_cols=127 Identities=15% Similarity=0.196 Sum_probs=69.9
Q ss_pred EEEEEEeCCCCCCcccccccccCCCCCceEEEEEeecccCccchhhhhhhhhhcccCCCcchhhHHHHHhhhccCCCceE
Q 003171 555 LAGTWNVGQGRASQDALISWLGSAASDVGIVVVGLQEVEMGAGFLAMSAAKETVGLEGSAVGHWWLDMIGKILDDGSTFE 634 (842)
Q Consensus 555 ~~~twNv~~~~~~~~~l~~~l~~~~~~~di~viglQE~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~l~~~l~~~~~y~ 634 (842)
-+.|||+++.+.....+.+||.. .+|||+ +|||+...... . . .+.+ +.+ +..|.
T Consensus 2 ri~T~Nv~g~~~~~~~i~~~i~~--~~pDIi--~LQE~~~~~~~----------------~-~--~~~~-~~~--gy~~~ 55 (268)
T PRK11756 2 KFVSFNINGLRARPHQLEAIIEK--HQPDVI--GLQETKVHDEM----------------F-P--LEEV-EAL--GYHVF 55 (268)
T ss_pred EEEEEEcCCHHHHHHHHHHHHHh--cCCCEE--EEEeccccccc----------------C-C--HHHH-Hhc--CCEEE
Confidence 46799999765544667888875 457775 59998532110 0 0 0111 122 22222
Q ss_pred EEeeeeceeeEEEEEEeccccCccCceeeceeecccCc--ccCCCCeeEEEEEEeCeEEEEEeecCcCCc-----chHHH
Q 003171 635 RVGSRQLAGLLIAVWVRKNLKDYVGDVDVAAVPCGFGR--AIGNKGAVGLRVRVYDRIMCFVNCHFAAHL-----EAVNR 707 (842)
Q Consensus 635 ~v~s~~l~g~~l~vf~r~~~~~~i~~v~~~~v~~G~~~--~~gnKG~v~i~~~i~~~~~~Fv~~HLaa~~-----~~~~~ 707 (842)
.-+...-.| .+|+.|..+. .+. .++.+ .-...+.+.+++...+..+.|+|+|++.+. ++.+.
T Consensus 56 ~~~~~~~~G--vailSr~p~~----~~~-----~~~~~~~~~~~~r~l~~~i~~~~g~~~v~n~y~P~~~~~~~~~~~~~ 124 (268)
T PRK11756 56 YHGQKGHYG--VALLSKQTPI----AVR-----KGFPTDDEEAQRRIIMATIPTPNGNLTVINGYFPQGESRDHPTKFPA 124 (268)
T ss_pred EeCCCCCCE--EEEEECCChH----HeE-----ECCCCccccccCCEEEEEEEcCCCCEEEEEEEecCCCCCCcchhHHH
Confidence 222233344 4567887653 121 12211 112457888888876556999999997653 23344
Q ss_pred HHHHHHHHHHh
Q 003171 708 RNADFDHVYRT 718 (842)
Q Consensus 708 Rn~~~~~I~~~ 718 (842)
|.+.++.+...
T Consensus 125 r~~~~~~l~~~ 135 (268)
T PRK11756 125 KRQFYQDLQNY 135 (268)
T ss_pred HHHHHHHHHHH
Confidence 55555555544
|
|
| >KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=97.87 E-value=0.00067 Score=71.76 Aligned_cols=113 Identities=12% Similarity=0.057 Sum_probs=83.6
Q ss_pred cCCCceEEEEECCCCc-EEEEeCCCeEEEEcCCCCe-----eeeeecCCccEEEEEe--cCCEEEEEecCcEEEEEeC--
Q 003171 417 DDNRRTEALTTSIDGM-IWTGGANGLLLQWDPNGNR-----LQDFQYLPFAVQCLCT--FGSQIWVGYMNGIVQVLDL-- 486 (842)
Q Consensus 417 ~~~~~v~al~~s~dg~-l~Sgs~DgtIrlWD~~g~~-----l~~l~~H~~~V~sls~--dG~~LasGs~DgtIrlWD~-- 486 (842)
++++...++.++|.+. +++||.-+.|-+|=.+++. -++-+.+.+.|+|++- .+-.|++|+.|+..||+..
T Consensus 98 RiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLlaaGs~D~k~rVfSayI 177 (361)
T KOG1523|consen 98 RINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAAGSTDGKCRVFSAYI 177 (361)
T ss_pred EeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcceecccccCcceeEEEEee
Confidence 3445556778888776 8999999999999875431 1222456788999974 5669999999999998861
Q ss_pred ---C--------------CcccccccccccCEEEEEe--CCCEEEEEcCCCCeeeccccCCC
Q 003171 487 ---E--------------GNLLGGWVAHSSPVIKMAV--GAGYIFTLANHGGIRGWNVTSPG 529 (842)
Q Consensus 487 ---~--------------g~~i~~l~gH~~~V~sla~--dg~~l~S~S~DgtIrvWd~~~~~ 529 (842)
+ |+++..+....++|..+.+ +|..|++.++|.+|.+=|...+.
T Consensus 178 K~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~p~ 239 (361)
T KOG1523|consen 178 KGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAGPS 239 (361)
T ss_pred eccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecCCCceEEeecCCCc
Confidence 1 1245566566788998875 69999999999999998866554
|
|
| >KOG2139 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.87 E-value=0.0024 Score=68.67 Aligned_cols=124 Identities=15% Similarity=0.161 Sum_probs=78.8
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEeccc-CCcEEEEEEecCCC--EEEeeCCCcEEEEeCC
Q 003171 194 VMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAH-RGPVLSLCISSYGD--LWSGSEGGGIKIWPWE 270 (842)
Q Consensus 194 V~~la~dpdg~~LaSGs~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH-~~~V~slafs~dG~--L~SgS~DgtIrvWd~~ 270 (842)
+.-+++++----++++..|-+||+++-.. .+...++.- +..|++|+|-|.+. |+.|.. +.|.+|..+
T Consensus 101 lr~~aWhqH~~~fava~nddvVriy~kss---------t~pt~Lks~sQrnvtclawRPlsaselavgCr-~gIciW~~s 170 (445)
T KOG2139|consen 101 LRGVAWHQHIIAFAVATNDDVVRIYDKSS---------TCPTKLKSVSQRNVTCLAWRPLSASELAVGCR-AGICIWSDS 170 (445)
T ss_pred eeeEeechhhhhhhhhccCcEEEEeccCC---------CCCceecchhhcceeEEEeccCCcceeeeeec-ceeEEEEcC
Confidence 55577777555678899999999998665 233334332 56899999999874 776765 469999875
Q ss_pred Cccceeec-CC-CceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcCCCCEEEEeCC--CcEEEEEccCCcEE
Q 003171 271 AIEKALSL-KP-EERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGF--LSFALWDARTRELL 345 (842)
Q Consensus 271 t~~~~l~~-~~-~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s~--~tI~lWD~~tg~~l 345 (842)
.....-.. .. ...+... ++.. .+..|.++.-.+++..+.+++. ..|.|||..+|..+
T Consensus 171 ~tln~~r~~~~~s~~~~qv---------l~~p---------gh~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~ 231 (445)
T KOG2139|consen 171 RTLNANRNIRMMSTHHLQV---------LQDP---------GHNPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKI 231 (445)
T ss_pred cccccccccccccccchhh---------eeCC---------CCceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcc
Confidence 42111000 00 0000000 0000 1345788888888888888874 57999999998763
|
|
| >PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide | Back alignment and domain information |
|---|
Probab=97.83 E-value=4.1e-05 Score=56.31 Aligned_cols=37 Identities=19% Similarity=0.322 Sum_probs=27.0
Q ss_pred CCeeeeeecCCccEEEEEe--cCCEEEEEecCcEEEEEe
Q 003171 449 GNRLQDFQYLPFAVQCLCT--FGSQIWVGYMNGIVQVLD 485 (842)
Q Consensus 449 g~~l~~l~~H~~~V~sls~--dG~~LasGs~DgtIrlWD 485 (842)
|++++++.+|..+|++++. ++.+|++|+.|++|++||
T Consensus 1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred CeEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 3567777777777777753 566777777777777776
|
WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g .... |
| >PRK05421 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.83 E-value=9.6e-05 Score=79.37 Aligned_cols=44 Identities=16% Similarity=0.137 Sum_probs=35.4
Q ss_pred CCCeeEEEEEE-eCeEEEEEeecCcCCcchHHHHHHHHHHHHHhc
Q 003171 676 NKGAVGLRVRV-YDRIMCFVNCHFAAHLEAVNRRNADFDHVYRTM 719 (842)
Q Consensus 676 nKG~v~i~~~i-~~~~~~Fv~~HLaa~~~~~~~Rn~~~~~I~~~l 719 (842)
-||++.+.+.+ .+..+.++|+||.+.....+.|.+++..|.+.+
T Consensus 134 ~r~~l~a~~~~~~g~~l~v~ntHl~~~~~~~~~r~~q~~~l~~~~ 178 (263)
T PRK05421 134 PKSALITEYPLPNGRTLLVVNIHAINFSLGVDVYSKQLEPIGDQI 178 (263)
T ss_pred cceeEEEEEEeCCCCEEEEEEECccccCcChHHHHHHHHHHHHHH
Confidence 48999999998 567899999999876444577888988887754
|
|
| >TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.037 Score=61.64 Aligned_cols=105 Identities=6% Similarity=-0.043 Sum_probs=64.8
Q ss_pred CcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCCC-EE-Eee---------CCCcEEEEeCCCccceeecCCC
Q 003171 213 GRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LW-SGS---------EGGGIKIWPWEAIEKALSLKPE 281 (842)
Q Consensus 213 GtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~-SgS---------~DgtIrvWd~~t~~~~l~~~~~ 281 (842)
++|-+-|.++. +.+.++..=..+-- + +||||+ |+ +.+ .+..|.+||..+.+..-.+...
T Consensus 27 ~~v~ViD~~~~--------~v~g~i~~G~~P~~-~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p 96 (352)
T TIGR02658 27 TQVYTIDGEAG--------RVLGMTDGGFLPNP-V-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELP 96 (352)
T ss_pred ceEEEEECCCC--------EEEEEEEccCCCce-e-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccC
Confidence 88999998885 33444432122222 4 999998 54 555 6899999999886543222111
Q ss_pred ce-eeeEEEEeeceeecccceeccceeeeecCCEEEEEEcCCCCEEEEeC---CCcEEEEEccCCcEEEEeec
Q 003171 282 ER-HTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG---FLSFALWDARTRELLKVFNI 350 (842)
Q Consensus 282 ~~-~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s---~~tI~lWD~~tg~~l~~l~~ 350 (842)
+. .... -.....++.+++|..++... +..+.+.|+.+++.+.....
T Consensus 97 ~~p~~~~-----------------------~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~v 146 (352)
T TIGR02658 97 EGPRFLV-----------------------GTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDV 146 (352)
T ss_pred CCchhhc-----------------------cCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeC
Confidence 10 0000 01223456677777777654 46899999999999887654
|
This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome. |
| >PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3 | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.028 Score=62.88 Aligned_cols=208 Identities=13% Similarity=0.188 Sum_probs=114.6
Q ss_pred CCCeEEEEEcCCCCEEEEEeC-CCcEEEEECCCCccCCCCCcceeEEeccc-----------CCcEEEEEEecCCC-EEE
Q 003171 191 VSSVMCMVGDEASGVVWSGHR-DGRIMCWKMNARLLDSDDGFGEVLSWQAH-----------RGPVLSLCISSYGD-LWS 257 (842)
Q Consensus 191 ~~~V~~la~dpdg~~LaSGs~-DGtIrlWdl~~g~~~~~~~~~~~~~l~gH-----------~~~V~slafs~dG~-L~S 257 (842)
......++++|++++|+++.+ +|+|-++++.... .+........| .....++.|+|||+ ++.
T Consensus 86 g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g-----~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v 160 (345)
T PF10282_consen 86 GSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDG-----SLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYV 160 (345)
T ss_dssp SSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTS-----EEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEE
T ss_pred CCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCc-----ccceeeeecccCCCCCcccccccccceeEEECCCCCEEEE
Confidence 344567999999999999986 7899999987621 01111111111 23468899999998 554
Q ss_pred e-eCCCcEEEEeCCCccceeecCCCceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcCCCCEEEEeC--CCcE
Q 003171 258 G-SEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG--FLSF 334 (842)
Q Consensus 258 g-S~DgtIrvWd~~t~~~~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s--~~tI 334 (842)
. -....|.+++++.....+.. ...+ .+ . .-..-+.+++++++..++... ..+|
T Consensus 161 ~dlG~D~v~~~~~~~~~~~l~~------~~~~-------~~-----~------~G~GPRh~~f~pdg~~~Yv~~e~s~~v 216 (345)
T PF10282_consen 161 PDLGADRVYVYDIDDDTGKLTP------VDSI-------KV-----P------PGSGPRHLAFSPDGKYAYVVNELSNTV 216 (345)
T ss_dssp EETTTTEEEEEEE-TTS-TEEE------EEEE-------EC-----S------TTSSEEEEEE-TTSSEEEEEETTTTEE
T ss_pred EecCCCEEEEEEEeCCCceEEE------eecc-------cc-----c------cCCCCcEEEEcCCcCEEEEecCCCCcE
Confidence 3 33457899988653321211 0000 00 0 012346677888777776654 3567
Q ss_pred EEEEcc--CCcEEEEeecCCceEeeeecccCCCcccccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEeec
Q 003171 335 ALWDAR--TRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAK 412 (842)
Q Consensus 335 ~lWD~~--tg~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~ 412 (842)
.++++. +|.+ +... .+... +.
T Consensus 217 ~v~~~~~~~g~~-~~~~--------------------------~~~~~------------~~------------------ 239 (345)
T PF10282_consen 217 SVFDYDPSDGSL-TEIQ--------------------------TISTL------------PE------------------ 239 (345)
T ss_dssp EEEEEETTTTEE-EEEE--------------------------EEESC------------ET------------------
T ss_pred EEEeecccCCce-eEEE--------------------------Eeeec------------cc------------------
Confidence 777665 3422 1110 00000 00
Q ss_pred CccccCCCceEEEEECCCCc-EEE-EeCCCeEEEEcCC---CC--eeeeeecCCccEEEE--EecCCEEEEEe-cCcEEE
Q 003171 413 GGFGDDNRRTEALTTSIDGM-IWT-GGANGLLLQWDPN---GN--RLQDFQYLPFAVQCL--CTFGSQIWVGY-MNGIVQ 482 (842)
Q Consensus 413 g~~~~~~~~v~al~~s~dg~-l~S-gs~DgtIrlWD~~---g~--~l~~l~~H~~~V~sl--s~dG~~LasGs-~DgtIr 482 (842)
.+. .......++++|||+ |++ .-.+++|-+++++ |+ .++.+......-+.+ +++|++|+++. .+++|.
T Consensus 240 -~~~-~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~ 317 (345)
T PF10282_consen 240 -GFT-GENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVS 317 (345)
T ss_dssp -TSC-SSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTEEE
T ss_pred -ccc-ccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCeEE
Confidence 000 011345688999998 544 3356789999982 32 233333333334555 55899999887 478999
Q ss_pred EEeC
Q 003171 483 VLDL 486 (842)
Q Consensus 483 lWD~ 486 (842)
+|++
T Consensus 318 vf~~ 321 (345)
T PF10282_consen 318 VFDI 321 (345)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 9976
|
1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H. |
| >KOG4190 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.00013 Score=81.12 Aligned_cols=226 Identities=14% Similarity=0.094 Sum_probs=136.7
Q ss_pred EEEEecCCCEEEEeCCCC-ccccccccccccCCCCCCCCCCeeeeeecCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 003171 144 QLWAGGENGLRVWNLKEL-YDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGHRDGRIMCWKMNA 222 (842)
Q Consensus 144 ~l~~~~D~~vrvWdl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~V~~la~dpdg~~LaSGs~DGtIrlWdl~~ 222 (842)
-+-++.|.+|++|.++.- ...+ ..+..|++..| ..+|..+.|-.+.+.++| -||-|.+||.--
T Consensus 750 FiSASkDKTVKLWSik~EgD~~~-------------tsaCQfTY~aH-kk~i~~igfL~~lr~i~S--cD~giHlWDPFi 813 (1034)
T KOG4190|consen 750 FISASKDKTVKLWSIKPEGDEIG-------------TSACQFTYQAH-KKPIHDIGFLADLRSIAS--CDGGIHLWDPFI 813 (1034)
T ss_pred eeeccCCceEEEEEeccccCccc-------------cceeeeEhhhc-cCcccceeeeeccceeee--ccCcceeecccc
Confidence 333477999999998531 1111 22345777666 889999998888888865 599999999765
Q ss_pred CccCCCCCcceeE--EecccCCcEEEEEEecC--CCE--EEeeCCCcEEEEeCCCccceeecCCCceeeeEEEEeeceee
Q 003171 223 RLLDSDDGFGEVL--SWQAHRGPVLSLCISSY--GDL--WSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYID 296 (842)
Q Consensus 223 g~~~~~~~~~~~~--~l~gH~~~V~slafs~d--G~L--~SgS~DgtIrvWd~~t~~~~l~~~~~~~~~~~l~~~~s~~~ 296 (842)
| ..+. .+....+++.-+.--++ ..| +-++...|||+.|....+-...+
T Consensus 814 g--------r~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~------------------ 867 (1034)
T KOG4190|consen 814 G--------RLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCEL------------------ 867 (1034)
T ss_pred c--------chhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeE------------------
Confidence 4 2221 12222233333333333 333 34588999999998664322111
Q ss_pred cccceecccee--eeecCCEEEEEEcCCCCEEEEeC-CCcEEEEEccCCcEEEEeecCCceEeeeecccCCCcccccceE
Q 003171 297 LRSHLSVNGFS--SILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFK 373 (842)
Q Consensus 297 l~~~~~~~~~~--~~~s~~v~~las~~~~~~v~s~s-~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~ 373 (842)
.+| +.|+.-+++++..+.|.+++.+- .++|.+.|+++|+++..+.+-. .
T Consensus 868 --------kVcna~~Pna~~R~iaVa~~GN~lAa~LSnGci~~LDaR~G~vINswrpme-----------------c--- 919 (1034)
T KOG4190|consen 868 --------KVCNAPGPNALTRAIAVADKGNKLAAALSNGCIAILDARNGKVINSWRPME-----------------C--- 919 (1034)
T ss_pred --------EeccCCCCchheeEEEeccCcchhhHHhcCCcEEEEecCCCceeccCCccc-----------------c---
Confidence 011 12355688999988888887764 5789999999998865443200 0
Q ss_pred EEEEecCCCCccceeeeEeecCcceEEecCCcEEEEeecCccccCCCceEEEEECCCCcEEEEeCCCeEEE-EcC-CCCe
Q 003171 374 TKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGMIWTGGANGLLLQ-WDP-NGNR 451 (842)
Q Consensus 374 ~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~al~~s~dg~l~Sgs~DgtIrl-WD~-~g~~ 451 (842)
+.. .++...|.-++....|.++-+ |-. +|..
T Consensus 920 ---------dll--------------------------------------qlaapsdq~L~~saldHslaVnWhaldgim 952 (1034)
T KOG4190|consen 920 ---------DLL--------------------------------------QLAAPSDQALAQSALDHSLAVNWHALDGIM 952 (1034)
T ss_pred ---------hhh--------------------------------------hhcCchhHHHHhhcccceeEeeehhcCCee
Confidence 000 011112223555556777777 877 6655
Q ss_pred eeeeecCCccEEEEEecCCEEEEEecCcEEEEEeC
Q 003171 452 LQDFQYLPFAVQCLCTFGSQIWVGYMNGIVQVLDL 486 (842)
Q Consensus 452 l~~l~~H~~~V~sls~dG~~LasGs~DgtIrlWD~ 486 (842)
..+.+....+..-+..-|.-|+.+.....+.||--
T Consensus 953 h~q~kpppepahflqsvgpSLV~a~~Gn~lgVYad 987 (1034)
T KOG4190|consen 953 HLQDKPPPEPAHFLQSVGPSLVTAQNGNILGVYAD 987 (1034)
T ss_pred eeccCCCCcchhhhhccCceeEEeccCcEEEEEec
Confidence 54555444554445555777778777888888853
|
|
| >KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown] | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.00094 Score=71.26 Aligned_cols=79 Identities=19% Similarity=0.254 Sum_probs=67.7
Q ss_pred CCCeeeeeecCCccEEEEEecC--CEEEEEecCcEEEEEeCCCc--ccccccccccCEEEEE--eCCCEEEEEcCCCCee
Q 003171 448 NGNRLQDFQYLPFAVQCLCTFG--SQIWVGYMNGIVQVLDLEGN--LLGGWVAHSSPVIKMA--VGAGYIFTLANHGGIR 521 (842)
Q Consensus 448 ~g~~l~~l~~H~~~V~sls~dG--~~LasGs~DgtIrlWD~~g~--~i~~l~gH~~~V~sla--~dg~~l~S~S~DgtIr 521 (842)
.-..+.++.+|...|.+++.|+ ..|.+|+.|..|-+||+-|+ ....+.+|.+.|..+. ..-+.++|++.||.|-
T Consensus 186 ~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~~~~t~~l~S~~edg~i~ 265 (404)
T KOG1409|consen 186 GCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQALSYAQHTRQLISCGEDGGIV 265 (404)
T ss_pred CCceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCcceeeeeccchhhhhhhhhhhhheeeeeccCCCeEE
Confidence 3467888999999999999875 48999999999999999754 4668889999999886 4667899999999999
Q ss_pred ecccc
Q 003171 522 GWNVT 526 (842)
Q Consensus 522 vWd~~ 526 (842)
+|+..
T Consensus 266 ~w~mn 270 (404)
T KOG1409|consen 266 VWNMN 270 (404)
T ss_pred EEecc
Confidence 99964
|
|
| >PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.0098 Score=62.09 Aligned_cols=96 Identities=21% Similarity=0.408 Sum_probs=63.2
Q ss_pred CCcEEEEeCCCeEEEEcC-CCCeeeeeecCCcc----E-------EEEEecCCEEEEEecCc-EEEEEeCC-Cccccccc
Q 003171 430 DGMIWTGGANGLLLQWDP-NGNRLQDFQYLPFA----V-------QCLCTFGSQIWVGYMNG-IVQVLDLE-GNLLGGWV 495 (842)
Q Consensus 430 dg~l~Sgs~DgtIrlWD~-~g~~l~~l~~H~~~----V-------~sls~dG~~LasGs~Dg-tIrlWD~~-g~~i~~l~ 495 (842)
++.++.+..++.|..+|+ +|+.+-.+..+... + ..+...+..++.++.++ .+.+ |++ |+.+ |.
T Consensus 122 ~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~g~~~~~-d~~tg~~~--w~ 198 (238)
T PF13360_consen 122 GDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRGSSPISSFSDINGSPVISDGRVYVSSGDGRVVAV-DLATGEKL--WS 198 (238)
T ss_dssp TTEEEEEETCSEEEEEETTTTEEEEEEESSTT-SS--EEEETTEEEEEECCTTEEEEECCTSSEEEE-ETTTTEEE--EE
T ss_pred cCEEEEEeccCcEEEEecCCCcEEEEeecCCCCCCcceeeecccccceEEECCEEEEEcCCCeEEEE-ECCCCCEE--EE
Confidence 345777777888999998 78877666553322 1 12233434788777777 4666 987 5533 33
Q ss_pred ccccCEEE-EEeCCCEEEEEcCCCCeeeccccCC
Q 003171 496 AHSSPVIK-MAVGAGYIFTLANHGGIRGWNVTSP 528 (842)
Q Consensus 496 gH~~~V~s-la~dg~~l~S~S~DgtIrvWd~~~~ 528 (842)
.....+.. ...++..++.++.|+.|..||+.+.
T Consensus 199 ~~~~~~~~~~~~~~~~l~~~~~~~~l~~~d~~tG 232 (238)
T PF13360_consen 199 KPISGIYSLPSVDGGTLYVTSSDGRLYALDLKTG 232 (238)
T ss_dssp ECSS-ECECEECCCTEEEEEETTTEEEEEETTTT
T ss_pred ecCCCccCCceeeCCEEEEEeCCCEEEEEECCCC
Confidence 33334555 5678888888889999999998764
|
... |
| >COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.00068 Score=71.22 Aligned_cols=77 Identities=13% Similarity=0.193 Sum_probs=53.3
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEecccC------------CcEEEEEEecCC-C--E
Q 003171 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHR------------GPVLSLCISSYG-D--L 255 (842)
Q Consensus 191 ~~~V~~la~dpdg~~LaSGs~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~------------~~V~slafs~dG-~--L 255 (842)
..-|+++.|+..|.+|++|...|.|.++.-+...+ ...+-...+|+|. ..|..+.+-.++ + +
T Consensus 26 ad~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~---ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hF 102 (460)
T COG5170 26 ADKITAVEFDETGLYLATGDKGGRVVLFEREKSYG---CEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHF 102 (460)
T ss_pred cceeeEEEeccccceEeecCCCceEEEeecccccc---cchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceE
Confidence 44689999999999999999999999997554210 0011122367775 246777665554 3 5
Q ss_pred EEeeCCCcEEEEeCC
Q 003171 256 WSGSEGGGIKIWPWE 270 (842)
Q Consensus 256 ~SgS~DgtIrvWd~~ 270 (842)
+-...|+|||+|.+-
T Consensus 103 LlstNdktiKlWKiy 117 (460)
T COG5170 103 LLSTNDKTIKLWKIY 117 (460)
T ss_pred EEecCCceeeeeeee
Confidence 555689999999874
|
|
| >KOG2695 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.00013 Score=77.55 Aligned_cols=198 Identities=18% Similarity=0.168 Sum_probs=114.3
Q ss_pred CcccccccccccCCCCCCCceeecCCCCCccccCceeEEEEecCCEEEEecCCCEEEEeCCCCccccccccccccCCCCC
Q 003171 99 DIPMFKPPVRAALHPARPPSLEVKPHPLRETQIGCFLRTIVCTEEQLWAGGENGLRVWNLKELYDESESDSVSVSKSKGE 178 (842)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~D~~vrvWdl~~~~~~~~~~~~~~~~~~~~ 178 (842)
++++|+.-.-.-+||++.| .++-.|....+..|+-++-..+-.+-+|.+..|-+-|++++...
T Consensus 185 ~e~~~~~s~~~~s~pe~n~---~~~~SlQi~~a~~CawSlni~gyhfs~G~sqqv~L~nvetg~~q-------------- 247 (425)
T KOG2695|consen 185 NEGQFHISTYNQSLPESNN---YMLCSLQIPKAWSCAWSLNIMGYHFSVGLSQQVLLTNVETGHQQ-------------- 247 (425)
T ss_pred cceEeehhhhhhccccCCC---CceeeecCCcchhhhhhhccceeeecccccceeEEEEeeccccc--------------
Confidence 3455554444444554222 11222333333344433333333433466777777777664321
Q ss_pred CCCCCeeeeeecCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEec-CCC-EE
Q 003171 179 DGTAPFKESVKGVSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISS-YGD-LW 256 (842)
Q Consensus 179 ~~~~~~~~~~~g~~~V~~la~dpdg~~LaSGs~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~-dG~-L~ 256 (842)
.|. . .+-|+++.|...+.++.-|...|.|-+.|+..+.. .+ ....+-.-|..+|++|..-. +++ |.
T Consensus 248 ----sf~---s-ksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnq--G~--~~~a~rlyh~Ssvtslq~Lq~s~q~Lm 315 (425)
T KOG2695|consen 248 ----SFQ---S-KSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQ--GN--GWCAQRLYHDSSVTSLQILQFSQQKLM 315 (425)
T ss_pred ----ccc---c-chhHHHHHhcccCCeeEecccCCcEEEEEeeeccc--CC--CcceEEEEcCcchhhhhhhccccceEe
Confidence 121 2 55788898887789999999999999999876410 00 11122234788999997665 444 88
Q ss_pred EeeCCCcEEEEeCCCccceeecCCCceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcCCCCEEEEeCCC-cEE
Q 003171 257 SGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGFL-SFA 335 (842)
Q Consensus 257 SgS~DgtIrvWd~~t~~~~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s~~-tI~ 335 (842)
+.+.+|+|++||..-.++.......+ || ++.... .-+...+..+.|++++++ -.+
T Consensus 316 aS~M~gkikLyD~R~~K~~~~V~qYe----------------GH--vN~~a~------l~~~v~~eeg~I~s~GdDcytR 371 (425)
T KOG2695|consen 316 ASDMTGKIKLYDLRATKCKKSVMQYE----------------GH--VNLSAY------LPAHVKEEEGSIFSVGDDCYTR 371 (425)
T ss_pred eccCcCceeEeeehhhhcccceeeee----------------cc--cccccc------cccccccccceEEEccCeeEEE
Confidence 88899999999986533311111111 12 111111 112234456667777754 588
Q ss_pred EEEccCCcEEEEee
Q 003171 336 LWDARTRELLKVFN 349 (842)
Q Consensus 336 lWD~~tg~~l~~l~ 349 (842)
||.++.|+++.++.
T Consensus 372 iWsl~~ghLl~tip 385 (425)
T KOG2695|consen 372 IWSLDSGHLLCTIP 385 (425)
T ss_pred EEecccCceeeccC
Confidence 99999999988764
|
|
| >TIGR03395 sphingomy sphingomyelin phosphodiesterase | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.00051 Score=74.52 Aligned_cols=76 Identities=13% Similarity=0.215 Sum_probs=52.4
Q ss_pred ceeeEEEEEEeccccCccCceeeceeecccCcccCCCCeeEEEEEEeCeEEEEEeecCcCCc------chHHHHHHHHHH
Q 003171 641 LAGLLIAVWVRKNLKDYVGDVDVAAVPCGFGRAIGNKGAVGLRVRVYDRIMCFVNCHFAAHL------EAVNRRNADFDH 714 (842)
Q Consensus 641 l~g~~l~vf~r~~~~~~i~~v~~~~v~~G~~~~~gnKG~v~i~~~i~~~~~~Fv~~HLaa~~------~~~~~Rn~~~~~ 714 (842)
+..-.++|+.|-.+......+- ...+|. ....+||.+.+++.+.+..+.|+|.||.+.. ..-..|.++++.
T Consensus 88 ~~~~G~~iLSr~Pi~~~~~~~f--~~~~~~-d~~~~kg~l~a~i~~~g~~~~v~~THL~~~~~~~~~~~~~~~R~~Q~~~ 164 (283)
T TIGR03395 88 LEDGGVAIVSKWPIEEKIQYIF--NKGCGA-DNLSNKGFAYVKINKNGKKFHVIGTHLQAQDSMCSKLGPASIRANQLNE 164 (283)
T ss_pred ccCCEEEEEECCCccccEEEEc--cCCCCC-ccccCCceEEEEEecCCeEEEEEEeCCCCCcccccccccHHHHHHHHHH
Confidence 4455677888877643311111 122332 2346899999999999999999999998753 225679999999
Q ss_pred HHHhc
Q 003171 715 VYRTM 719 (842)
Q Consensus 715 I~~~l 719 (842)
|.+-+
T Consensus 165 i~~~i 169 (283)
T TIGR03395 165 IQDFI 169 (283)
T ss_pred HHHHH
Confidence 97764
|
Members of this family are bacterial proteins that act as sphingomyelin phosphodiesterase (EC 3.1.4.12), also called sphingomyelinase. Some members of this family have been shown to act as hemolysins. |
| >KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.0004 Score=72.69 Aligned_cols=103 Identities=17% Similarity=0.206 Sum_probs=78.1
Q ss_pred EEECCCCc-EEEEeCCCeEEEEcC-CC--CeeeeeecCCccEEEEEe---cCCEEEEEecCcEEEEEeCC--Cccc-ccc
Q 003171 425 LTTSIDGM-IWTGGANGLLLQWDP-NG--NRLQDFQYLPFAVQCLCT---FGSQIWVGYMNGIVQVLDLE--GNLL-GGW 494 (842)
Q Consensus 425 l~~s~dg~-l~Sgs~DgtIrlWD~-~g--~~l~~l~~H~~~V~sls~---dG~~LasGs~DgtIrlWD~~--g~~i-~~l 494 (842)
+-+++-|. ++++-.+|.+-+-+. .. +.+++.+.|.-......+ +...+++|+.|+.+..||++ ++++ +.-
T Consensus 127 lD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~n~ 206 (339)
T KOG0280|consen 127 LDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWHNS 206 (339)
T ss_pred EEeeccCceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceeeecc
Confidence 44555555 666667777764444 33 345578899888776655 35689999999999999987 4443 446
Q ss_pred cccccCEEEEE---eCCCEEEEEcCCCCeeeccccC
Q 003171 495 VAHSSPVIKMA---VGAGYIFTLANHGGIRGWNVTS 527 (842)
Q Consensus 495 ~gH~~~V~sla---~dg~~l~S~S~DgtIrvWd~~~ 527 (842)
+-|+..|.+|. +.+.++++||.|-.|++||.++
T Consensus 207 kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRn 242 (339)
T KOG0280|consen 207 KVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRN 242 (339)
T ss_pred eeeecceEEEecCCCCCceEEEeccccceeeeehhc
Confidence 78999999997 4677999999999999999764
|
|
| >PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.0083 Score=62.63 Aligned_cols=195 Identities=16% Similarity=0.238 Sum_probs=106.5
Q ss_pred CCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCCCEEEeeCCCcEEEEeCCCccceeecCCC
Q 003171 202 ASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGDLWSGSEGGGIKIWPWEAIEKALSLKPE 281 (842)
Q Consensus 202 dg~~LaSGs~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~L~SgS~DgtIrvWd~~t~~~~l~~~~~ 281 (842)
+++.|++++.++.+..||..+| +.+-+... .+.+.......++.++.++.|+.|..+|..+++...+....
T Consensus 35 ~~~~v~~~~~~~~l~~~d~~tG--------~~~W~~~~-~~~~~~~~~~~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~ 105 (238)
T PF13360_consen 35 DGGRVYVASGDGNLYALDAKTG--------KVLWRFDL-PGPISGAPVVDGGRVYVGTSDGSLYALDAKTGKVLWSIYLT 105 (238)
T ss_dssp ETTEEEEEETTSEEEEEETTTS--------EEEEEEEC-SSCGGSGEEEETTEEEEEETTSEEEEEETTTSCEEEEEEE-
T ss_pred eCCEEEEEcCCCEEEEEECCCC--------CEEEEeec-cccccceeeecccccccccceeeeEecccCCcceeeeeccc
Confidence 4678888899999999999887 44433322 11111112344566888888899999998887655442110
Q ss_pred ceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcCCCCEEEEeC-CCcEEEEEccCCcEEEEeecCCceEeeeec
Q 003171 282 ERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVFNIDGQIENRVDM 360 (842)
Q Consensus 282 ~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s-~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~ 360 (842)
.. ..... .... ..... +..+..+. .+.|..+|+++|+.+-........
T Consensus 106 ~~------------------~~~~~----~~~~-~~~~~--~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~------ 154 (238)
T PF13360_consen 106 SS------------------PPAGV----RSSS-SPAVD--GDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPR------ 154 (238)
T ss_dssp SS------------------CTCST----B--S-EEEEE--TTEEEEEETCSEEEEEETTTTEEEEEEESSTT-------
T ss_pred cc------------------ccccc----cccc-CceEe--cCEEEEEeccCcEEEEecCCCcEEEEeecCCCC------
Confidence 00 00000 0000 11111 33344443 678999999999986655331100
Q ss_pred ccCCCcccccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEeecCccccCCCceEEEEECCCCcEEEEeCCC
Q 003171 361 SLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGMIWTGGANG 440 (842)
Q Consensus 361 s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~al~~s~dg~l~Sgs~Dg 440 (842)
... .+. .. ......+.+. ++.++.++.++
T Consensus 155 ----------------------~~~----~~~------~~------------------~~~~~~~~~~-~~~v~~~~~~g 183 (238)
T PF13360_consen 155 ----------------------GSS----PIS------SF------------------SDINGSPVIS-DGRVYVSSGDG 183 (238)
T ss_dssp ----------------------SS------EE------EE------------------TTEEEEEECC-TTEEEEECCTS
T ss_pred ----------------------CCc----cee------ee------------------cccccceEEE-CCEEEEEcCCC
Confidence 000 000 00 0000112222 44666666677
Q ss_pred e-EEEEcC-CCCeeeeeecCCccEEE-EEecCCEEEEEecCcEEEEEeCC-Ccc
Q 003171 441 L-LLQWDP-NGNRLQDFQYLPFAVQC-LCTFGSQIWVGYMNGIVQVLDLE-GNL 490 (842)
Q Consensus 441 t-IrlWD~-~g~~l~~l~~H~~~V~s-ls~dG~~LasGs~DgtIrlWD~~-g~~ 490 (842)
. +.+ |. +|+.+-... ...+.. ...++..|+.++.++.|.+||++ |+.
T Consensus 184 ~~~~~-d~~tg~~~w~~~--~~~~~~~~~~~~~~l~~~~~~~~l~~~d~~tG~~ 234 (238)
T PF13360_consen 184 RVVAV-DLATGEKLWSKP--ISGIYSLPSVDGGTLYVTSSDGRLYALDLKTGKV 234 (238)
T ss_dssp SEEEE-ETTTTEEEEEEC--SS-ECECEECCCTEEEEEETTTEEEEEETTTTEE
T ss_pred eEEEE-ECCCCCEEEEec--CCCccCCceeeCCEEEEEeCCCEEEEEECCCCCE
Confidence 4 555 88 676442222 233444 56788999999899999999987 553
|
... |
| >KOG3914 consensus WD repeat protein WDR4 [Function unknown] | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.00019 Score=77.89 Aligned_cols=102 Identities=12% Similarity=0.084 Sum_probs=80.0
Q ss_pred EeCCCeEEEEcC-CCCeeeeeecCCccEEEE--EecCCEEEEEecCcEEEEEeCCC-cccccc-cccccCEEEEEe-CCC
Q 003171 436 GGANGLLLQWDP-NGNRLQDFQYLPFAVQCL--CTFGSQIWVGYMNGIVQVLDLEG-NLLGGW-VAHSSPVIKMAV-GAG 509 (842)
Q Consensus 436 gs~DgtIrlWD~-~g~~l~~l~~H~~~V~sl--s~dG~~LasGs~DgtIrlWD~~g-~~i~~l-~gH~~~V~sla~-dg~ 509 (842)
.+....+.+|.. ++.+ ..+-||-+.++.+ ++|+++|.++..|..||+=...+ -.+.+| -||...|..++. ++.
T Consensus 128 agD~~~~di~s~~~~~~-~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~~ 206 (390)
T KOG3914|consen 128 AGDVYSFDILSADSGRC-EPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDNY 206 (390)
T ss_pred cCCceeeeeecccccCc-chhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccCc
Confidence 334566777877 4544 4455999999987 46899999999999999988764 446666 479999999995 777
Q ss_pred EEEEEcCCCCeeeccccCCCCCcchhhhh
Q 003171 510 YIFTLANHGGIRGWNVTSPGPLDSILCKE 538 (842)
Q Consensus 510 ~l~S~S~DgtIrvWd~~~~~~~d~~l~~~ 538 (842)
.|+|+|.|++||+||+++...++.+-...
T Consensus 207 ~LlS~sGD~tlr~Wd~~sgk~L~t~dl~s 235 (390)
T KOG3914|consen 207 LLLSGSGDKTLRLWDITSGKLLDTCDLSS 235 (390)
T ss_pred eeeecCCCCcEEEEecccCCcccccchhH
Confidence 78999999999999999988877654433
|
|
| >KOG2695 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.00012 Score=77.98 Aligned_cols=108 Identities=21% Similarity=0.275 Sum_probs=82.5
Q ss_pred CceEEEEECC-CCcEEEEeCCCeEEEEcC-C-----CCeeeeeecCCccEEEE---EecCCEEEEEecCcEEEEEeCC-C
Q 003171 420 RRTEALTTSI-DGMIWTGGANGLLLQWDP-N-----GNRLQDFQYLPFAVQCL---CTFGSQIWVGYMNGIVQVLDLE-G 488 (842)
Q Consensus 420 ~~v~al~~s~-dg~l~Sgs~DgtIrlWD~-~-----g~~l~~l~~H~~~V~sl---s~dG~~LasGs~DgtIrlWD~~-g 488 (842)
..|-++.|.. +..+.-|+.+|.|...|+ . |.|.+.+ .|.+.|+|+ .+++++|.+.+.+|+|+|||+. .
T Consensus 253 sDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rl-yh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~ 331 (425)
T KOG2695|consen 253 SDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRL-YHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRAT 331 (425)
T ss_pred hhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEE-EcCcchhhhhhhccccceEeeccCcCceeEeeehhh
Confidence 3455555555 445788999999999998 3 3566655 589999997 3578899998999999999986 5
Q ss_pred cc---cccccccccCEEEE----EeCCCEEEEEcCCCCeeeccccCC
Q 003171 489 NL---LGGWVAHSSPVIKM----AVGAGYIFTLANHGGIRGWNVTSP 528 (842)
Q Consensus 489 ~~---i~~l~gH~~~V~sl----a~dg~~l~S~S~DgtIrvWd~~~~ 528 (842)
++ +++..||.+.-.-+ .+....++++|.|.-.|+|.+...
T Consensus 332 K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~g 378 (425)
T KOG2695|consen 332 KCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSG 378 (425)
T ss_pred hcccceeeeecccccccccccccccccceEEEccCeeEEEEEecccC
Confidence 55 88999997643322 245668999999999999998753
|
|
| >COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.16 Score=55.13 Aligned_cols=245 Identities=10% Similarity=0.147 Sum_probs=126.8
Q ss_pred CCCeEEEEEcCCCCEEEEEeCC---CcEEEEECCCCccCCCCCcceeEEeccc----CCcEEEEEEecCCC-EEEee-CC
Q 003171 191 VSSVMCMVGDEASGVVWSGHRD---GRIMCWKMNARLLDSDDGFGEVLSWQAH----RGPVLSLCISSYGD-LWSGS-EG 261 (842)
Q Consensus 191 ~~~V~~la~dpdg~~LaSGs~D---GtIrlWdl~~g~~~~~~~~~~~~~l~gH----~~~V~slafs~dG~-L~SgS-~D 261 (842)
.+.+.-|+++|+++.|+++..+ |.|-.+.++... -.+++..+ ..+-+.|+++++|+ |++++ .-
T Consensus 39 ~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~--------G~Lt~ln~~~~~g~~p~yvsvd~~g~~vf~AnY~~ 110 (346)
T COG2706 39 LGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDD--------GRLTFLNRQTLPGSPPCYVSVDEDGRFVFVANYHS 110 (346)
T ss_pred cCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCC--------CeEEEeeccccCCCCCeEEEECCCCCEEEEEEccC
Confidence 4456779999999999999876 567666665421 11222222 12237899999998 55665 45
Q ss_pred CcEEEEeCCCccceeecCCCceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcCCCCEEEEeCC--CcEEEEEc
Q 003171 262 GGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGF--LSFALWDA 339 (842)
Q Consensus 262 gtIrvWd~~t~~~~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s~--~tI~lWD~ 339 (842)
|.|.+..+..-....... ..+ .|...+...--.++.+-+.-+++++..|++..- +.|.++++
T Consensus 111 g~v~v~p~~~dG~l~~~v------~~~----------~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~ 174 (346)
T COG2706 111 GSVSVYPLQADGSLQPVV------QVV----------KHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDL 174 (346)
T ss_pred ceEEEEEcccCCccccce------eee----------ecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEc
Confidence 899999885411100000 000 000000000000223445666777777777653 46889999
Q ss_pred cCCcEEEEeecCCceEeeeecccCCCcccccceEEEEEecCCCCccceeeeEeecCcceEEec-CCcEEEEee----cCc
Q 003171 340 RTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGA-ADAVRRVAA----KGG 414 (842)
Q Consensus 340 ~tg~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~-~~~v~~v~~----~g~ 414 (842)
..|.+...- +. .+ ..+.. ..-+.|.++++.+.+-. .+....++. .|.
T Consensus 175 ~dg~L~~~~----~~----~v----------------~~G~G----PRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~ 226 (346)
T COG2706 175 DDGKLTPAD----PA----EV----------------KPGAG----PRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGK 226 (346)
T ss_pred ccCcccccc----cc----cc----------------CCCCC----cceEEEcCCCcEEEEEeccCCEEEEEEEcCCCce
Confidence 877653211 00 00 00000 01244555555443322 122222211 121
Q ss_pred cc------------cCCCceEEEEECCCCcEEEEeC--CCeEEEEcC--CCCeeeeee---cCCccEE--EEEecCCEEE
Q 003171 415 FG------------DDNRRTEALTTSIDGMIWTGGA--NGLLLQWDP--NGNRLQDFQ---YLPFAVQ--CLCTFGSQIW 473 (842)
Q Consensus 415 ~~------------~~~~~v~al~~s~dg~l~Sgs~--DgtIrlWD~--~g~~l~~l~---~H~~~V~--sls~dG~~La 473 (842)
|. ....+..++.+++||+.+-+|. ...|.++.+ .+..+.... .|...-+ .++++|++|+
T Consensus 227 ~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Li 306 (346)
T COG2706 227 FEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLI 306 (346)
T ss_pred EEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEE
Confidence 11 1234566789999999655553 336777766 344443332 1222223 3566789888
Q ss_pred EEec-CcEEEEEeCC
Q 003171 474 VGYM-NGIVQVLDLE 487 (842)
Q Consensus 474 sGs~-DgtIrlWD~~ 487 (842)
++.. +..|.++-.+
T Consensus 307 aa~q~sd~i~vf~~d 321 (346)
T COG2706 307 AANQKSDNITVFERD 321 (346)
T ss_pred EEccCCCcEEEEEEc
Confidence 8775 5679998754
|
|
| >COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.0054 Score=69.77 Aligned_cols=297 Identities=18% Similarity=0.300 Sum_probs=150.2
Q ss_pred eeecCCCCCccccCceeEEEEec-CCEEEEecCCCEEEEeCCCCccccccccccccCCCCCCCCCCeeeeeecCCCeEEE
Q 003171 119 LEVKPHPLRETQIGCFLRTIVCT-EEQLWAGGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCM 197 (842)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~l~~~-~~~l~~~~D~~vrvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~V~~l 197 (842)
+++.+.|++| .+.++..+ ..+||+|+|.+|.+.+.+.-... ...++.+ ...|..+
T Consensus 197 lql~s~~~dk-----~I~al~~d~qg~LWVGTdqGv~~~e~~G~~~s---------------n~~~~lp----~~~I~ll 252 (671)
T COG3292 197 LQLASPPLDK-----AINALIADVQGRLWVGTDQGVYLQEAEGWRAS---------------NWGPMLP----SGNILLL 252 (671)
T ss_pred EEcCCCcchh-----hHHHHHHHhcCcEEEEeccceEEEchhhcccc---------------ccCCCCc----chheeee
Confidence 4454555553 34444445 55999999999999987642111 1122222 3457766
Q ss_pred EEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEec-cc-CCcEEEEEEecCCCEEEeeCCCcEEEEeCCCccce
Q 003171 198 VGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQ-AH-RGPVLSLCISSYGDLWSGSEGGGIKIWPWEAIEKA 275 (842)
Q Consensus 198 a~dpdg~~LaSGs~DGtIrlWdl~~g~~~~~~~~~~~~~l~-gH-~~~V~slafs~dG~L~SgS~DgtIrvWd~~t~~~~ 275 (842)
.-|. .+.+|.|+..|..|.--...+ -.....+ +| ...|.++..+.+|.||.++.++.+++=+-+=....
T Consensus 253 ~qD~-qG~lWiGTenGl~r~~l~rq~--------Lq~~~~~~~l~~S~vnsL~~D~dGsLWv~t~~giv~~~~a~w~~ma 323 (671)
T COG3292 253 VQDA-QGELWIGTENGLWRTRLPRQG--------LQIPLSKMHLGVSTVNSLWLDTDGSLWVGTYGGIVRYLTADWKRMA 323 (671)
T ss_pred eccc-CCCEEEeecccceeEecCCCC--------ccccccccCCccccccceeeccCCCEeeeccCceEEEecchhhhee
Confidence 6664 467899999997654322222 1111112 22 35788999999999999999987776543110000
Q ss_pred eecCCCceeeeEEEEeec-----ee-------ecccceeccce-eee---ecCCEEEEEEcCCCCEEEEeCCC-cEEEEE
Q 003171 276 LSLKPEERHTAALIVERS-----YI-------DLRSHLSVNGF-SSI---LTSDIKNLLSDHSRAKVWSAGFL-SFALWD 338 (842)
Q Consensus 276 l~~~~~~~~~~~l~~~~s-----~~-------~l~~~~~~~~~-~~~---~s~~v~~las~~~~~~v~s~s~~-tI~lWD 338 (842)
+.............+..+ .. .....+..+.. .++ ...++..+..+. +.++|-++-+ ++..|+
T Consensus 324 ~in~~dG~v~~~~~~a~~ll~~~v~~~ns~g~L~van~stG~~v~sv~q~Rg~nit~~~~d~-~g~lWlgs~q~GLsrl~ 402 (671)
T COG3292 324 VINDSDGGVSQYEAVAPALLSWGVRQLNSIGELMVANGSTGELVRSVHQLRGMNITTTLEDS-RGRLWLGSMQNGLSRLD 402 (671)
T ss_pred eeecCCCchhhhhccCchhcccceeeccccceEEEecCCCCcEEEEeeeccccccchhhhcc-CCcEEEEecccchhhhc
Confidence 000000000000000000 00 00000000000 000 012334444443 6678877754 777777
Q ss_pred ccC-CcEEEEeecCCceEeeeecccCCCcccccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEeecC----
Q 003171 339 ART-RELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKG---- 413 (842)
Q Consensus 339 ~~t-g~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g---- 413 (842)
..+ +..+..-.+ .+++ +++ .+.- +.....|+|+.+|+.....++
T Consensus 403 n~n~~avlde~ag--------l~ss--------~V~--------------aive-d~dnsLWIGTs~Glvk~~pe~~~v~ 451 (671)
T COG3292 403 NKNEWAVLDEDAG--------LPSS--------EVS--------------AIVE-DPDNSLWIGTSGGLVKRDPESGRVL 451 (671)
T ss_pred cCCcccccccccC--------Cccc--------cee--------------eeee-cCCCCEEEeccCCeEecCccccchh
Confidence 665 222111000 0000 000 0000 112246899999987766421
Q ss_pred ------ccccCCCceEEEEECCCCcEEEEeCCCeEEEEcCCCCee-eeeecCCccEEEEEe-cCCEEEEEecCcEE
Q 003171 414 ------GFGDDNRRTEALTTSIDGMIWTGGANGLLLQWDPNGNRL-QDFQYLPFAVQCLCT-FGSQIWVGYMNGIV 481 (842)
Q Consensus 414 ------~~~~~~~~v~al~~s~dg~l~Sgs~DgtIrlWD~~g~~l-~~l~~H~~~V~sls~-dG~~LasGs~DgtI 481 (842)
....+...+..+...++|.||.++.+| |-.|+..++.. ..+.....+-+++.+ .+.++|.+..-+.+
T Consensus 452 n~ln~~~~~l~~s~~~~lg~~~~g~Lw~a~g~g-va~~~sq~~~~~~~l~~~~q~qy~f~~~~~d~vw~~~~Rg~v 526 (671)
T COG3292 452 NLLNPGSHGLDGSRVEQLGLGPDGRLWLAAGSG-VAAWESQRRMFVPILDLTGQRQYSFVPVGGDEVWVHRLRGLV 526 (671)
T ss_pred cccccccCcCCcchhhhhccCCCCceEEEecce-eeeeccccceecccccccceeeEEEEEccCceEeeeeeceee
Confidence 111234567889999999999999998 89999866432 223322334444444 56788887544433
|
|
| >PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.066 Score=56.61 Aligned_cols=56 Identities=20% Similarity=0.408 Sum_probs=40.8
Q ss_pred ceEEEEECCCCcEEEEe-CCCeEEEEcCCCCeeeeeecCCccEEEEEe---cCCEEEEEe
Q 003171 421 RTEALTTSIDGMIWTGG-ANGLLLQWDPNGNRLQDFQYLPFAVQCLCT---FGSQIWVGY 476 (842)
Q Consensus 421 ~v~al~~s~dg~l~Sgs-~DgtIrlWD~~g~~l~~l~~H~~~V~sls~---dG~~LasGs 476 (842)
....++++.+|.||++. ..+.|.++|.+|+.+..+......++++++ +.+.|++.+
T Consensus 185 ~pDG~~vD~~G~l~va~~~~~~I~~~~p~G~~~~~i~~p~~~~t~~~fgg~~~~~L~vTt 244 (246)
T PF08450_consen 185 YPDGLAVDSDGNLWVADWGGGRIVVFDPDGKLLREIELPVPRPTNCAFGGPDGKTLYVTT 244 (246)
T ss_dssp EEEEEEEBTTS-EEEEEETTTEEEEEETTSCEEEEEE-SSSSEEEEEEESTTSSEEEEEE
T ss_pred CCCcceEcCCCCEEEEEcCCCEEEEECCCccEEEEEcCCCCCEEEEEEECCCCCEEEEEe
Confidence 35668899999988775 467799999999988888766567888877 445666544
|
These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A .... |
| >TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.066 Score=59.66 Aligned_cols=69 Identities=16% Similarity=0.217 Sum_probs=48.3
Q ss_pred EEECCCCc-EEEEe----------CCCeEEEEcC-CCCeeeeeecCCccEEE--EEecCC-EEEEEe-cCcEEEEEeCC-
Q 003171 425 LTTSIDGM-IWTGG----------ANGLLLQWDP-NGNRLQDFQYLPFAVQC--LCTFGS-QIWVGY-MNGIVQVLDLE- 487 (842)
Q Consensus 425 l~~s~dg~-l~Sgs----------~DgtIrlWD~-~g~~l~~l~~H~~~V~s--ls~dG~-~LasGs-~DgtIrlWD~~- 487 (842)
+++++||. ++... ..+.|.++|. +++.+..+.. ...+.. +++||+ +|++.. .+++|.+.|+.
T Consensus 253 ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~v-G~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t 331 (352)
T TIGR02658 253 VAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIEL-GHEIDSINVSQDAKPLLYALSTGDKTLYIFDAET 331 (352)
T ss_pred EEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeC-CCceeeEEECCCCCeEEEEeCCCCCcEEEEECcC
Confidence 56666655 55421 1247999999 7888887764 234555 467899 888777 58899999987
Q ss_pred Ccccccc
Q 003171 488 GNLLGGW 494 (842)
Q Consensus 488 g~~i~~l 494 (842)
++.+++.
T Consensus 332 ~k~i~~i 338 (352)
T TIGR02658 332 GKELSSV 338 (352)
T ss_pred CeEEeee
Confidence 6777665
|
This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome. |
| >PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3 | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.11 Score=58.04 Aligned_cols=252 Identities=12% Similarity=0.166 Sum_probs=135.5
Q ss_pred CCeEEEEEcCCCCEEEEEeC----CCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCCC-EEEee-CCCcEE
Q 003171 192 SSVMCMVGDEASGVVWSGHR----DGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGS-EGGGIK 265 (842)
Q Consensus 192 ~~V~~la~dpdg~~LaSGs~----DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS-~DgtIr 265 (842)
.....|+++|++++|++.+. +|.|-.|++.... ..+..+.+.......-..++++|+|+ |+.+. .+|+|-
T Consensus 37 ~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~----g~L~~~~~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~ 112 (345)
T PF10282_consen 37 ENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDT----GTLTLLNSVPSGGSSPCHIAVDPDGRFLYVANYGGGSVS 112 (345)
T ss_dssp SSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTT----TEEEEEEEEEESSSCEEEEEECTTSSEEEEEETTTTEEE
T ss_pred CCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCc----ceeEEeeeeccCCCCcEEEEEecCCCEEEEEEccCCeEE
Confidence 34556889999999999987 4688888876520 01122222221233456799999998 55544 689999
Q ss_pred EEeCCCccceeecCCCceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcCCCCEEEEeCC--CcEEEEEccCCc
Q 003171 266 IWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGF--LSFALWDARTRE 343 (842)
Q Consensus 266 vWd~~t~~~~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s~--~tI~lWD~~tg~ 343 (842)
++++......... ...+ ...+.+..... -.....-++.+++++..|+.+.- +.|.++++....
T Consensus 113 v~~l~~~g~l~~~------~~~~-------~~~g~g~~~~r--q~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~ 177 (345)
T PF10282_consen 113 VFPLDDDGSLGEV------VQTV-------RHEGSGPNPDR--QEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDT 177 (345)
T ss_dssp EEEECTTSEEEEE------EEEE-------ESEEEESSTTT--TSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS
T ss_pred EEEccCCccccee------eeec-------ccCCCCCcccc--cccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCC
Confidence 9999652111000 0000 00000000000 00233456777888888877642 467777765433
Q ss_pred --EEEEeecCCceEeeeecccCCCcccccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEeecCccccCCCc
Q 003171 344 --LLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRR 421 (842)
Q Consensus 344 --~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~ 421 (842)
+...-. .. ......
T Consensus 178 ~~l~~~~~---------------------------~~-------------------------------------~~~G~G 193 (345)
T PF10282_consen 178 GKLTPVDS---------------------------IK-------------------------------------VPPGSG 193 (345)
T ss_dssp -TEEEEEE---------------------------EE-------------------------------------CSTTSS
T ss_pred ceEEEeec---------------------------cc-------------------------------------cccCCC
Confidence 211000 00 001122
Q ss_pred eEEEEECCCCc-EEEE-eCCCeEEEEcCC---CC--eeeeeecC------CccEE--EEEecCCEEEEEec-CcEEEEEe
Q 003171 422 TEALTTSIDGM-IWTG-GANGLLLQWDPN---GN--RLQDFQYL------PFAVQ--CLCTFGSQIWVGYM-NGIVQVLD 485 (842)
Q Consensus 422 v~al~~s~dg~-l~Sg-s~DgtIrlWD~~---g~--~l~~l~~H------~~~V~--sls~dG~~LasGs~-DgtIrlWD 485 (842)
...++|+|||+ ++.. -.+++|.+++.. |+ .++++... ..... .+++||++|+++.. ..+|-+++
T Consensus 194 PRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~ 273 (345)
T PF10282_consen 194 PRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFD 273 (345)
T ss_dssp EEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEE
T ss_pred CcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEE
Confidence 34577888887 4343 356778888773 21 22222211 11223 35678999998764 77999999
Q ss_pred CC---Ccc--cccccccccCEEEEE--eCCCEEEEEc-CCCCeeecccc
Q 003171 486 LE---GNL--LGGWVAHSSPVIKMA--VGAGYIFTLA-NHGGIRGWNVT 526 (842)
Q Consensus 486 ~~---g~~--i~~l~gH~~~V~sla--~dg~~l~S~S-~DgtIrvWd~~ 526 (842)
+. |++ +..+......-..++ ++|++|+.+. .+++|.+|++.
T Consensus 274 ~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d 322 (345)
T PF10282_consen 274 LDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVFDID 322 (345)
T ss_dssp ECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTEEEEEEEE
T ss_pred EecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCeEEEEEEe
Confidence 83 333 333322223355555 5899888554 67789999864
|
1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H. |
| >COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.049 Score=61.27 Aligned_cols=109 Identities=14% Similarity=0.143 Sum_probs=78.3
Q ss_pred CCceEEEEECCCCc---EEEEeCCCeEEEEcCCCCeeeeeecCCccEEEEEecCCEEEEEec---CcEEEEEeCCCc--c
Q 003171 419 NRRTEALTTSIDGM---IWTGGANGLLLQWDPNGNRLQDFQYLPFAVQCLCTFGSQIWVGYM---NGIVQVLDLEGN--L 490 (842)
Q Consensus 419 ~~~v~al~~s~dg~---l~Sgs~DgtIrlWD~~g~~l~~l~~H~~~V~sls~dG~~LasGs~---DgtIrlWD~~g~--~ 490 (842)
...|..+.+.|.+. +++|-.+-++-++|+.|+....+-....--..+++.+++++.++- .|.|.+||..|+ +
T Consensus 274 ~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~Nl~~~~Pe~~rNT~~fsp~~r~il~agF~nl~gni~i~~~~~rf~~ 353 (561)
T COG5354 274 KDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGNLRFYFPEQKRNTIFFSPHERYILFAGFDNLQGNIEIFDPAGRFKV 353 (561)
T ss_pred cccceeeeecccCCceeEEecccccceeecccccceEEecCCcccccccccCcccEEEEecCCccccceEEeccCCceEE
Confidence 45677788988775 456667889999999888655443222222234678899888775 579999999876 4
Q ss_pred cccccccccCEEEEEeCCCEEEEEc------CCCCeeeccccC
Q 003171 491 LGGWVAHSSPVIKMAVGAGYIFTLA------NHGGIRGWNVTS 527 (842)
Q Consensus 491 i~~l~gH~~~V~sla~dg~~l~S~S------~DgtIrvWd~~~ 527 (842)
+..+.|-+..+....+|++++.+.- -|..|++|++..
T Consensus 354 ~~~~~~~n~s~~~wspd~qF~~~~~ts~k~~~Dn~i~l~~v~g 396 (561)
T COG5354 354 AGAFNGLNTSYCDWSPDGQFYDTDTTSEKLRVDNSIKLWDVYG 396 (561)
T ss_pred EEEeecCCceEeeccCCceEEEecCCCcccccCcceEEEEecC
Confidence 5577777766666678888776543 488999999865
|
|
| >TIGR00633 xth exodeoxyribonuclease III (xth) | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.0011 Score=70.47 Aligned_cols=124 Identities=21% Similarity=0.287 Sum_probs=64.0
Q ss_pred EEEEEEeCCCCCCcccc-cccccCCCCCceEEEEEeecccCccchhhhhhhhhhcccCCCcchhhHHHHHhhhccCCCce
Q 003171 555 LAGTWNVGQGRASQDAL-ISWLGSAASDVGIVVVGLQEVEMGAGFLAMSAAKETVGLEGSAVGHWWLDMIGKILDDGSTF 633 (842)
Q Consensus 555 ~~~twNv~~~~~~~~~l-~~~l~~~~~~~di~viglQE~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~l~~~l~~~~~y 633 (842)
-+.|||+++.......+ .+||.. .++|| ++|||+......+ .+.+...+ +..|
T Consensus 2 ri~t~Nv~g~~~~~~~~~~~~l~~--~~~DI--v~LQE~~~~~~~~--------------------~~~~~~~~--g~~~ 55 (255)
T TIGR00633 2 KIISWNVNGLRARLHKLFLDWLKE--EQPDV--LCLQETKVADEQF--------------------PAELFEEL--GYHV 55 (255)
T ss_pred EEEEEecccHHHHhhccHHHHHHh--cCCCE--EEEEeccCchhhC--------------------CHhHhccC--CceE
Confidence 57899999875544555 777774 45665 5789986431100 00111112 2333
Q ss_pred EEEeee--eceeeEEEEEEeccccCccCceeeceeecccCcc-cCCCCeeEEEEEEeCeEEEEEeecCcCCc----chHH
Q 003171 634 ERVGSR--QLAGLLIAVWVRKNLKDYVGDVDVAAVPCGFGRA-IGNKGAVGLRVRVYDRIMCFVNCHFAAHL----EAVN 706 (842)
Q Consensus 634 ~~v~s~--~l~g~~l~vf~r~~~~~~i~~v~~~~v~~G~~~~-~gnKG~v~i~~~i~~~~~~Fv~~HLaa~~----~~~~ 706 (842)
...... .-.|+ +||.|..+. .+.. |+... ....|- .+.+.+ ..+.++++|+++.. +..+
T Consensus 56 ~~~~~~~~~~~G~--ailsr~~~~----~~~~-----~~~~~~~~~~~r-~l~~~~--~~~~i~~vy~p~~~~~~~~~~~ 121 (255)
T TIGR00633 56 FFHGAKSKGYSGV--AILSKVEPL----DVRY-----GFGGEEHDEEGR-VITAEF--DGFTVVNVYVPNGGSRGLERLE 121 (255)
T ss_pred EEeecccCCcceE--EEEEcCCcc----eEEE-----CCCCCcccCCCc-EEEEEE--CCEEEEEEEccCCCCCCchhHH
Confidence 222221 33454 566886653 1221 21111 122332 333433 46899999998754 2345
Q ss_pred HHHHHHHHHHHh
Q 003171 707 RRNADFDHVYRT 718 (842)
Q Consensus 707 ~Rn~~~~~I~~~ 718 (842)
.|.+.|+.+.+.
T Consensus 122 ~r~~~~~~l~~~ 133 (255)
T TIGR00633 122 YKLQFWDALFQY 133 (255)
T ss_pred HHHHHHHHHHHH
Confidence 677777666554
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >PRK01029 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.023 Score=65.45 Aligned_cols=66 Identities=12% Similarity=-0.020 Sum_probs=40.1
Q ss_pred EEEECCCCc-EEEEeCC---CeEEEEcCCCCeeeeeecCCccEE--EEEecCCEEEEEec---CcEEEEEeCCCc
Q 003171 424 ALTTSIDGM-IWTGGAN---GLLLQWDPNGNRLQDFQYLPFAVQ--CLCTFGSQIWVGYM---NGIVQVLDLEGN 489 (842)
Q Consensus 424 al~~s~dg~-l~Sgs~D---gtIrlWD~~g~~l~~l~~H~~~V~--sls~dG~~LasGs~---DgtIrlWD~~g~ 489 (842)
...+||||+ |+..+.+ ..|.+||+.+...+.+......+. .+++||++|+..+. ...|.+||+.+.
T Consensus 331 ~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt~~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g 405 (428)
T PRK01029 331 CPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQLTTSPENKESPSWAIDSLHLVYSAGNSNESELYLISLITK 405 (428)
T ss_pred ceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEEccCCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCC
Confidence 456889987 5544432 369999995433344443222333 34678997775433 357888898754
|
|
| >KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.0048 Score=66.00 Aligned_cols=104 Identities=13% Similarity=0.108 Sum_probs=64.7
Q ss_pred eEEEEECCCC--cEEEEeCCCeEEEEcCCC--Cee---eeeecCC------------ccEEEE--EecCCEEEEEecCcE
Q 003171 422 TEALTTSIDG--MIWTGGANGLLLQWDPNG--NRL---QDFQYLP------------FAVQCL--CTFGSQIWVGYMNGI 480 (842)
Q Consensus 422 v~al~~s~dg--~l~Sgs~DgtIrlWD~~g--~~l---~~l~~H~------------~~V~sl--s~dG~~LasGs~Dgt 480 (842)
|++-.|.|.- .++-.|..|+|||-|+.. -|. +.|.... ..|..+ +.+|+||++-+. -+
T Consensus 216 ITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryilsRDy-lt 294 (433)
T KOG1354|consen 216 ITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDY-LT 294 (433)
T ss_pred HhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEecc-ce
Confidence 4455566643 355566789999999942 222 1222111 122233 336899988543 58
Q ss_pred EEEEeCC--Ccccccccccc------------cCEEE---EEe--CCCEEEEEcCCCCeeecccc
Q 003171 481 VQVLDLE--GNLLGGWVAHS------------SPVIK---MAV--GAGYIFTLANHGGIRGWNVT 526 (842)
Q Consensus 481 IrlWD~~--g~~i~~l~gH~------------~~V~s---la~--dg~~l~S~S~DgtIrvWd~~ 526 (842)
|+|||+. .+++.+..-|. +.|.. +.+ ++.+++|||..+..|++++.
T Consensus 295 vk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg~~~~v~TGsy~n~frvf~~~ 359 (433)
T KOG1354|consen 295 VKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFECSWSGNDSYVMTGSYNNVFRVFNLA 359 (433)
T ss_pred eEEEeccccCCcceEEeehHhHHHHHHHHhhccchhheeEEEEcCCcceEecccccceEEEecCC
Confidence 9999985 56777777664 33332 224 44589999999999999854
|
|
| >TIGR00195 exoDNase_III exodeoxyribonuclease III | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.0015 Score=69.75 Aligned_cols=36 Identities=28% Similarity=0.452 Sum_probs=26.1
Q ss_pred EEEEEEeCCCCCCcccccccccCCCCCceEEEEEeecccC
Q 003171 555 LAGTWNVGQGRASQDALISWLGSAASDVGIVVVGLQEVEM 594 (842)
Q Consensus 555 ~~~twNv~~~~~~~~~l~~~l~~~~~~~di~viglQE~~~ 594 (842)
-+.|||+++.......+.+||.. .++||+ +|||+..
T Consensus 2 ri~t~Ni~g~~~~~~~~~~~l~~--~~~DIi--~LQE~~~ 37 (254)
T TIGR00195 2 KIISWNVNGLRARLHKGLAWLKE--NQPDVL--CLQETKV 37 (254)
T ss_pred EEEEEEcCcHHHhHHHHHHHHHh--cCCCEE--EEEeccc
Confidence 57899999866555567778874 456765 5999864
|
The model brings in reverse transcriptases at scores below 50, model also contains eukaryotic apurinic/apyrimidinic endonucleases which group in the same family |
| >PRK01029 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.038 Score=63.70 Aligned_cols=103 Identities=12% Similarity=-0.036 Sum_probs=58.6
Q ss_pred EEEECCCCc-EEEEe-CCCeEEEEc--CC--CCeeeeeecCCccEE--EEEecCCEEEEEecC---cEEEEEeCCCcccc
Q 003171 424 ALTTSIDGM-IWTGG-ANGLLLQWD--PN--GNRLQDFQYLPFAVQ--CLCTFGSQIWVGYMN---GIVQVLDLEGNLLG 492 (842)
Q Consensus 424 al~~s~dg~-l~Sgs-~DgtIrlWD--~~--g~~l~~l~~H~~~V~--sls~dG~~LasGs~D---gtIrlWD~~g~~i~ 492 (842)
...+||||+ |+..+ .+|...+|. +. +...+.+..+...+. .+++||++|+..+.+ ..|.+||+++...+
T Consensus 285 ~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~ 364 (428)
T PRK01029 285 NPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDY 364 (428)
T ss_pred CeEECCCCCEEEEEECCCCCceEEEEECcccccceEEeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeE
Confidence 357889987 66544 466555664 42 334454554444433 457899988876543 47999999744333
Q ss_pred cccccccCEEEE--EeCCCEEE-EEcCC--CCeeecccc
Q 003171 493 GWVAHSSPVIKM--AVGAGYIF-TLANH--GGIRGWNVT 526 (842)
Q Consensus 493 ~l~gH~~~V~sl--a~dg~~l~-S~S~D--gtIrvWd~~ 526 (842)
.+......+.+. ++||+.|+ ++..+ ..|.+|++.
T Consensus 365 ~Lt~~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~ 403 (428)
T PRK01029 365 QLTTSPENKESPSWAIDSLHLVYSAGNSNESELYLISLI 403 (428)
T ss_pred EccCCCCCccceEECCCCCEEEEEECCCCCceEEEEECC
Confidence 333322233333 46888776 43332 345566654
|
|
| >KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.061 Score=61.21 Aligned_cols=70 Identities=19% Similarity=0.207 Sum_probs=56.1
Q ss_pred EEEEECCCCcE-EE-EeC--CCeEEEEcC-CCCeeeeeecCCccEEEEEecCCEEEEEec------CcEEEEEeCCCccc
Q 003171 423 EALTTSIDGMI-WT-GGA--NGLLLQWDP-NGNRLQDFQYLPFAVQCLCTFGSQIWVGYM------NGIVQVLDLEGNLL 491 (842)
Q Consensus 423 ~al~~s~dg~l-~S-gs~--DgtIrlWD~-~g~~l~~l~~H~~~V~sls~dG~~LasGs~------DgtIrlWD~~g~~i 491 (842)
.++.|+|.|.+ +. |-. -|.|-+||+ +-+++..+..-...+...++||+++++++. |..|+||+..|.++
T Consensus 315 N~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a~~tt~~eW~PdGe~flTATTaPRlrvdNg~KiwhytG~~l 394 (566)
T KOG2315|consen 315 NTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLIAKFKAANTTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYTGSLL 394 (566)
T ss_pred cceEECCCCCEEEEeecCCCCCceEEEeccchhhccccccCCceEEEEcCCCcEEEEEeccccEEecCCeEEEEecCcee
Confidence 45789999983 33 433 378999999 778999998877777778999999988873 78999999998764
Q ss_pred c
Q 003171 492 G 492 (842)
Q Consensus 492 ~ 492 (842)
.
T Consensus 395 ~ 395 (566)
T KOG2315|consen 395 H 395 (566)
T ss_pred e
Confidence 3
|
|
| >KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.008 Score=63.92 Aligned_cols=207 Identities=12% Similarity=0.130 Sum_probs=109.6
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCCC--EEEeeCCCcEEEEeCCCccc
Q 003171 197 MVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD--LWSGSEGGGIKIWPWEAIEK 274 (842)
Q Consensus 197 la~dpdg~~LaSGs~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~--L~SgS~DgtIrvWd~~t~~~ 274 (842)
..|||+|++||+.+.- .+.+-|.++- + +.++----..|.-+.+..|.. |-..+.|+.|.+|++..-+-
T Consensus 14 c~fSp~g~yiAs~~~y-rlviRd~~tl--------q-~~qlf~cldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew 83 (447)
T KOG4497|consen 14 CSFSPCGNYIASLSRY-RLVIRDSETL--------Q-LHQLFLCLDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEW 83 (447)
T ss_pred eeECCCCCeeeeeeee-EEEEeccchh--------h-HHHHHHHHHHhhheeeeccceeeeeeeeccceEEEEEeeccee
Confidence 4689999999999876 5556676652 1 111100023566677777775 45788999999999854221
Q ss_pred eeecCCCceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcCCCCEEEEeC--CCcEEEEEccCCcEEEEeecCC
Q 003171 275 ALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG--FLSFALWDARTRELLKVFNIDG 352 (842)
Q Consensus 275 ~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s--~~tI~lWD~~tg~~l~~l~~~~ 352 (842)
..+... . ........-+++|+.+...+ +..|.+|.+.|.++... .+.
T Consensus 84 ~ckIde---------------------g--------~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~--~~p 132 (447)
T KOG4497|consen 84 YCKIDE---------------------G--------QAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLL--PHP 132 (447)
T ss_pred EEEecc---------------------C--------CCcceeeeECCCcceEeeeecceeEEEEEEeccceeEEe--ccc
Confidence 111110 0 11222333456665444433 35788999988765322 111
Q ss_pred ceEeeeecccCCCcccccceEEEEEecCCCCccceeeeEeecCcceEEecC-CcEEEE-------ee-cCccccCCCceE
Q 003171 353 QIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAA-DAVRRV-------AA-KGGFGDDNRRTE 423 (842)
Q Consensus 353 ~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~-~~v~~v-------~~-~g~~~~~~~~v~ 423 (842)
.. . ...++|.++++...+.+. |..-.+ |. .+.|.-++....
T Consensus 133 K~-------------------------~-----~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~Dlt 182 (447)
T KOG4497|consen 133 KT-------------------------N-----VKGYAFHPDGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLT 182 (447)
T ss_pred cc-------------------------C-----ceeEEECCCCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCccccc
Confidence 10 0 001233333332222111 000000 00 122333444455
Q ss_pred EEEECCCCcEEEEeCCCeEEEEcC--CCCeeeeeecCC-ccEEEE--EecCCEEEEEecCcEEEEEe
Q 003171 424 ALTTSIDGMIWTGGANGLLLQWDP--NGNRLQDFQYLP-FAVQCL--CTFGSQIWVGYMNGIVQVLD 485 (842)
Q Consensus 424 al~~s~dg~l~Sgs~DgtIrlWD~--~g~~l~~l~~H~-~~V~sl--s~dG~~LasGs~DgtIrlWD 485 (842)
.+.+||||. .+.+||. +-+.. ..|. -.|..+ +|.+++|++|+.|+.+||.+
T Consensus 183 gieWsPdg~--------~laVwd~~Leykv~---aYe~~lG~k~v~wsP~~qflavGsyD~~lrvln 238 (447)
T KOG4497|consen 183 GIEWSPDGN--------WLAVWDNVLEYKVY---AYERGLGLKFVEWSPCNQFLAVGSYDQMLRVLN 238 (447)
T ss_pred CceECCCCc--------EEEEecchhhheee---eeeeccceeEEEeccccceEEeeccchhhhhhc
Confidence 677888874 4557876 22221 1222 345555 46789999999999999988
|
|
| >COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown] | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.81 Score=51.39 Aligned_cols=125 Identities=13% Similarity=0.046 Sum_probs=79.7
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCC-cEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCCC-EEEeeCCCcEEEEe
Q 003171 191 VSSVMCMVGDEASGVVWSGHRDG-RIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWP 268 (842)
Q Consensus 191 ~~~V~~la~dpdg~~LaSGs~DG-tIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd 268 (842)
.+.|.-..+..+++-++.|..|| .+-++|..++ +.....+.-+.|.+|..+++|+ ++.+-...-|-+.|
T Consensus 359 ~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~---------e~kr~e~~lg~I~av~vs~dGK~~vvaNdr~el~vid 429 (668)
T COG4946 359 KGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGG---------EVKRIEKDLGNIEAVKVSPDGKKVVVANDRFELWVID 429 (668)
T ss_pred CCceEEEEEccCCcceEEeccCCceEEEEecCCc---------eEEEeeCCccceEEEEEcCCCcEEEEEcCceEEEEEE
Confidence 33466666666677889999999 8999999986 3455666678899999999999 55555556677778
Q ss_pred CCCccceeecCCCceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcCCCCEEEEeCCCcEEEEEccCCcEEEEe
Q 003171 269 WEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGFLSFALWDARTRELLKVF 348 (842)
Q Consensus 269 ~~t~~~~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s~~tI~lWD~~tg~~l~~l 348 (842)
++++...+.-..+..... .+..+.+.+++|.+-..+.+ -+.|+|+|+.+++...+-
T Consensus 430 idngnv~~idkS~~~lIt--------------------df~~~~nsr~iAYafP~gy~----tq~Iklydm~~~Kiy~vT 485 (668)
T COG4946 430 IDNGNVRLIDKSEYGLIT--------------------DFDWHPNSRWIAYAFPEGYY----TQSIKLYDMDGGKIYDVT 485 (668)
T ss_pred ecCCCeeEecccccceeE--------------------EEEEcCCceeEEEecCccee----eeeEEEEecCCCeEEEec
Confidence 877543322111111111 11124455566653322111 157999999998875543
|
|
| >PRK13911 exodeoxyribonuclease III; Provisional | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.0074 Score=64.27 Aligned_cols=37 Identities=27% Similarity=0.435 Sum_probs=27.5
Q ss_pred EEEEEEeCCCCCCc-ccccccccCCCCCceEEEEEeecccCc
Q 003171 555 LAGTWNVGQGRASQ-DALISWLGSAASDVGIVVVGLQEVEMG 595 (842)
Q Consensus 555 ~~~twNv~~~~~~~-~~l~~~l~~~~~~~di~viglQE~~~~ 595 (842)
-+.|||||+-+... ..+.+||.. .+||| |+|||.-+.
T Consensus 2 ki~swNVNgir~~~~~~~~~~l~~--~~~DI--iclQEtK~~ 39 (250)
T PRK13911 2 KLISWNVNGLRACMTKGFMDFFNS--VDADV--FCIQESKMQ 39 (250)
T ss_pred EEEEEEeCChhHhhhhhHHHHHHh--cCCCE--EEEEeeccc
Confidence 47899999876644 358889985 55665 689998653
|
|
| >PRK11138 outer membrane biogenesis protein BamB; Provisional | Back alignment and domain information |
|---|
Probab=96.94 E-value=0.23 Score=56.54 Aligned_cols=95 Identities=22% Similarity=0.245 Sum_probs=61.9
Q ss_pred CCcEEEEeCCCeEEEEcC-CCCeeeeeecCCccEEEEEecCCEEEEEecCcEEEEEeCC-Ccccccc--cccccCEEEEE
Q 003171 430 DGMIWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQCLCTFGSQIWVGYMNGIVQVLDLE-GNLLGGW--VAHSSPVIKMA 505 (842)
Q Consensus 430 dg~l~Sgs~DgtIrlWD~-~g~~l~~l~~H~~~V~sls~dG~~LasGs~DgtIrlWD~~-g~~i~~l--~gH~~~V~sla 505 (842)
++.++.++.+|.+...|+ +|+.+=+... .....+..++.+|+.++.+|.|..+|.+ |+.+=.. ..+ ....+..
T Consensus 256 ~~~vy~~~~~g~l~ald~~tG~~~W~~~~--~~~~~~~~~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~-~~~~sp~ 332 (394)
T PRK11138 256 GGVVYALAYNGNLVALDLRSGQIVWKREY--GSVNDFAVDGGRIYLVDQNDRVYALDTRGGVELWSQSDLLH-RLLTAPV 332 (394)
T ss_pred CCEEEEEEcCCeEEEEECCCCCEEEeecC--CCccCcEEECCEEEEEcCCCeEEEEECCCCcEEEcccccCC-CcccCCE
Confidence 677888888999999999 7875433221 1222345578889999999999999986 6532111 111 1122223
Q ss_pred eCCCEEEEEcCCCCeeeccccC
Q 003171 506 VGAGYIFTLANHGGIRGWNVTS 527 (842)
Q Consensus 506 ~dg~~l~S~S~DgtIrvWd~~~ 527 (842)
..+..++.++.||.|...|..+
T Consensus 333 v~~g~l~v~~~~G~l~~ld~~t 354 (394)
T PRK11138 333 LYNGYLVVGDSEGYLHWINRED 354 (394)
T ss_pred EECCEEEEEeCCCEEEEEECCC
Confidence 3466778888899888877554
|
|
| >smart00476 DNaseIc deoxyribonuclease I | Back alignment and domain information |
|---|
Probab=96.94 E-value=0.007 Score=65.09 Aligned_cols=128 Identities=16% Similarity=0.050 Sum_probs=65.3
Q ss_pred eEEEEEEEeCCCCCCc---ccccccccCCCCCceEEEEEeecccCccchhhhhhhhhhcccCCCcchhhHHHHHhhhccC
Q 003171 553 KILAGTWNVGQGRASQ---DALISWLGSAASDVGIVVVGLQEVEMGAGFLAMSAAKETVGLEGSAVGHWWLDMIGKILDD 629 (842)
Q Consensus 553 ~i~~~twNv~~~~~~~---~~l~~~l~~~~~~~di~viglQE~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~l~~~l~~ 629 (842)
.+.++|||+-..-... ....+.+-.....+|| ||+||+.-..+ .+.+ .-.+.|.+..
T Consensus 17 ~l~I~SfNIr~fgd~k~~~~~r~~~i~~il~~~DI--iglQEV~d~q~----~~l~------------~ll~~Ln~~~-- 76 (276)
T smart00476 17 SLRICAFNIQSFGDSKMSNATLMSIIVKILSRYDI--ALVQEVRDSDL----SAVP------------KLMDQLNSDS-- 76 (276)
T ss_pred cEEEEEEECcccCCccccHHHHHHHHHHHhccCCE--EEEEEeecchh----HHHH------------HHHHHHhhcC--
Confidence 3889999996322111 1112222222235665 68999843211 0011 0112222222
Q ss_pred CCceEEEeeeece----eeEEEEEEeccccCccCceeeceeecccCcccCCCCeeEEEEEEeCe---EEEEEeecCcCC
Q 003171 630 GSTFERVGSRQLA----GLLIAVWVRKNLKDYVGDVDVAAVPCGFGRAIGNKGAVGLRVRVYDR---IMCFVNCHFAAH 701 (842)
Q Consensus 630 ~~~y~~v~s~~l~----g~~l~vf~r~~~~~~i~~v~~~~v~~G~~~~~gnKG~v~i~~~i~~~---~~~Fv~~HLaa~ 701 (842)
+..|..+++..++ +-...+|-|++....+..-.....+-|-.. .=.-=...++|+...+ .|.+||+|+.+.
T Consensus 77 ~~~Y~~v~s~r~gr~~~~E~~a~~Yr~drv~v~~~~~f~d~~~~~~~-~F~ReP~~~~F~~~~~~~~~F~li~~H~~p~ 154 (276)
T smart00476 77 PNTYSYVSSEPLGRNSYKEQYLFLYRSDLVSVLDSYLYDDGCECGND-VFSREPFVVKFSSPSTAVKEFVIVPLHTTPE 154 (276)
T ss_pred CCCceEEecCCCCCCCCCEEEEEEEecceEEEcccceecCCCCCccc-cccccceEEEEEeCCCCCccEEEEEecCChH
Confidence 3478888877664 466777888776433332221110001100 1133456677777664 799999999875
|
Deoxyribonuclease I catalyzes the endonucleolytic cleavage of double-stranded DNA. The enzyme is secreted outside the cell and also involved in apoptosis in the nucleus. |
| >COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.87 E-value=0.072 Score=60.97 Aligned_cols=112 Identities=21% Similarity=0.416 Sum_probs=71.1
Q ss_pred CCCccccCceeEEEEec-CCEEEEecCCCEEEEeCCCCccccccccccccCCCCCCCCCCeeeeeecCCCeEEEEEcCCC
Q 003171 125 PLRETQIGCFLRTIVCT-EEQLWAGGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEAS 203 (842)
Q Consensus 125 ~~~~~~~~~~~~~l~~~-~~~l~~~~D~~vrvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~V~~la~dpdg 203 (842)
+-|+.-++.++.+|..+ .+.+|++++.++..+|..+++... .+..|+ .-+|..++.|- +
T Consensus 157 ~~r~ll~d~~V~aLv~D~~g~lWvgT~dGL~~fd~~~gkalq-------------l~s~~~------dk~I~al~~d~-q 216 (671)
T COG3292 157 DVRPLLKDTPVVALVFDANGRLWVGTPDGLSYFDAGRGKALQ-------------LASPPL------DKAINALIADV-Q 216 (671)
T ss_pred CccccccCccceeeeeeccCcEEEecCCcceEEccccceEEE-------------cCCCcc------hhhHHHHHHHh-c
Confidence 34666667788889888 449999999999999987654321 111222 12566666663 5
Q ss_pred CEEEEEeCCCcEEEEECCCCccCCCCCcceeEEe--cccCCcEEEEEEecCCCEEEeeCCCcEEE
Q 003171 204 GVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSW--QAHRGPVLSLCISSYGDLWSGSEGGGIKI 266 (842)
Q Consensus 204 ~~LaSGs~DGtIrlWdl~~g~~~~~~~~~~~~~l--~gH~~~V~slafs~dG~L~SgS~DgtIrv 266 (842)
+.||.|+.+|.. +.+.++- ....+ .=..+.|+.+.-+..|.+|-|++.|..|.
T Consensus 217 g~LWVGTdqGv~-~~e~~G~---------~~sn~~~~lp~~~I~ll~qD~qG~lWiGTenGl~r~ 271 (671)
T COG3292 217 GRLWVGTDQGVY-LQEAEGW---------RASNWGPMLPSGNILLLVQDAQGELWIGTENGLWRT 271 (671)
T ss_pred CcEEEEeccceE-EEchhhc---------cccccCCCCcchheeeeecccCCCEEEeecccceeE
Confidence 678999999943 3333331 01111 01245677777777888999998875543
|
|
| >KOG2756 consensus Predicted Mg2+-dependent phosphodiesterase TTRAP [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.85 E-value=0.0085 Score=62.13 Aligned_cols=64 Identities=25% Similarity=0.344 Sum_probs=47.7
Q ss_pred eEEEEEEeCeEEEEEeecCcCCcchHHHHHHHHHHHHHhcCcCCCCCccchhccCCCceeeecccCCCCCCCccCCCCCc
Q 003171 680 VGLRVRVYDRIMCFVNCHFAAHLEAVNRRNADFDHVYRTMTFCRPSNLCSAAAAGASSVVQMLRSTNPLSGLTVEGVPEL 759 (842)
Q Consensus 680 v~i~~~i~~~~~~Fv~~HLaa~~~~~~~Rn~~~~~I~~~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 759 (842)
-.+...|.+..+||+++||.+-.+.--+|.++|...+.++.=- . .+
T Consensus 195 ~I~Ev~v~G~Kl~l~tsHLEStr~h~P~r~~qF~~~~~k~~Ea---------------------------------I-e~ 240 (349)
T KOG2756|consen 195 LIVEVNVSGNKLCLMTSHLESTRGHAPERMNQFKMVLKKMQEA---------------------------------I-ES 240 (349)
T ss_pred EEEEEeecCceEEEEeccccCCCCCChHHHHHHHHHHHHHHHH---------------------------------H-Hh
Confidence 4556667788999999999988887888999998887775200 0 01
Q ss_pred CcccEEEEeccceeeecC
Q 003171 760 SEADMVIFLGDFNYRLDG 777 (842)
Q Consensus 760 ~~~d~vf~~GDlNyRi~~ 777 (842)
...-.|||-||+|.|=..
T Consensus 241 lPnA~ViFGGD~NlrD~e 258 (349)
T KOG2756|consen 241 LPNATVIFGGDTNLRDRE 258 (349)
T ss_pred CCCceEEEcCcccchhhh
Confidence 234689999999999653
|
|
| >PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species | Back alignment and domain information |
|---|
Probab=96.82 E-value=0.73 Score=48.62 Aligned_cols=87 Identities=23% Similarity=0.302 Sum_probs=56.4
Q ss_pred CceEEEEECCCCc-EE-EEeCCCeEEEEcCC--CCee---eee---ecCCccEEEEEecCC-EEEEEe-cCcEEEEEeCC
Q 003171 420 RRTEALTTSIDGM-IW-TGGANGLLLQWDPN--GNRL---QDF---QYLPFAVQCLCTFGS-QIWVGY-MNGIVQVLDLE 487 (842)
Q Consensus 420 ~~v~al~~s~dg~-l~-Sgs~DgtIrlWD~~--g~~l---~~l---~~H~~~V~sls~dG~-~LasGs-~DgtIrlWD~~ 487 (842)
.....++++||++ |+ +-+..+.|..++.+ +..+ +.+ .......-.++.|.. .||++. ..+.|.++|.+
T Consensus 134 ~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~ 213 (246)
T PF08450_consen 134 GFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD 213 (246)
T ss_dssp SSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT
T ss_pred ccccceEECCcchheeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC
Confidence 4456799999997 54 55567788888883 3312 222 221223455666532 455544 68899999999
Q ss_pred CcccccccccccCEEEEEe
Q 003171 488 GNLLGGWVAHSSPVIKMAV 506 (842)
Q Consensus 488 g~~i~~l~gH~~~V~sla~ 506 (842)
|+++..+......++++++
T Consensus 214 G~~~~~i~~p~~~~t~~~f 232 (246)
T PF08450_consen 214 GKLLREIELPVPRPTNCAF 232 (246)
T ss_dssp SCEEEEEE-SSSSEEEEEE
T ss_pred ccEEEEEcCCCCCEEEEEE
Confidence 9988877766668888886
|
These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A .... |
| >KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.80 E-value=0.012 Score=61.94 Aligned_cols=115 Identities=13% Similarity=0.264 Sum_probs=79.0
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCC-C-EEEeeCCCcEEEEeCCC
Q 003171 194 VMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYG-D-LWSGSEGGGIKIWPWEA 271 (842)
Q Consensus 194 V~~la~dpdg~~LaSGs~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG-~-L~SgS~DgtIrvWd~~t 271 (842)
-.|+.+++.+..|+++-.+|.+-+-+... ...+..+.|++|.-..+...|+... . ++|||+|+.+.-||+..
T Consensus 124 ~lslD~~~~~~~i~vs~s~G~~~~v~~t~------~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~ 197 (339)
T KOG0280|consen 124 ALSLDISTSGTKIFVSDSRGSISGVYETE------MVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRI 197 (339)
T ss_pred eeEEEeeccCceEEEEcCCCcEEEEecce------eeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecC
Confidence 45778888899999999999987444333 2345566899999999999998654 3 57999999999999862
Q ss_pred ccceeecCCCceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcC-CCCEEEEeCC-CcEEEEEccC
Q 003171 272 IEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDH-SRAKVWSAGF-LSFALWDART 341 (842)
Q Consensus 272 ~~~~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~-~~~~v~s~s~-~tI~lWD~~t 341 (842)
. +.+..+. ...+..| |.++.+++ ....|++|++ .+|++||.+.
T Consensus 198 p-~~~i~~n------------------~kvH~~G--------V~SI~ss~~~~~~I~TGsYDe~i~~~DtRn 242 (339)
T KOG0280|consen 198 P-KTFIWHN------------------SKVHTSG--------VVSIYSSPPKPTYIATGSYDECIRVLDTRN 242 (339)
T ss_pred C-cceeeec------------------ceeeecc--------eEEEecCCCCCceEEEeccccceeeeehhc
Confidence 1 1221111 1122333 44444443 4567888885 6899999874
|
|
| >PRK04043 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=96.79 E-value=0.18 Score=57.88 Aligned_cols=71 Identities=8% Similarity=0.042 Sum_probs=46.0
Q ss_pred CeEEEEEcCCCCE-EEEEeCC---CcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCCC-E-EEeeCCC--cE
Q 003171 193 SVMCMVGDEASGV-VWSGHRD---GRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-L-WSGSEGG--GI 264 (842)
Q Consensus 193 ~V~~la~dpdg~~-LaSGs~D---GtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L-~SgS~Dg--tI 264 (842)
....-.++|||+. ++..+.+ ..|.++|+.++. ...+....+.+.+..|||||+ | ++.+.++ .|
T Consensus 189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~---------~~~lt~~~g~~~~~~~SPDG~~la~~~~~~g~~~I 259 (419)
T PRK04043 189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGK---------KEKIASSQGMLVVSDVSKDGSKLLLTMAPKGQPDI 259 (419)
T ss_pred CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCc---------EEEEecCCCcEEeeEECCCCCEEEEEEccCCCcEE
Confidence 6677899999984 7765555 357778888862 222323455666788999997 4 4555554 45
Q ss_pred EEEeCCCc
Q 003171 265 KIWPWEAI 272 (842)
Q Consensus 265 rvWd~~t~ 272 (842)
.++++.++
T Consensus 260 y~~dl~~g 267 (419)
T PRK04043 260 YLYDTNTK 267 (419)
T ss_pred EEEECCCC
Confidence 55566553
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.76 E-value=0.09 Score=61.17 Aligned_cols=78 Identities=18% Similarity=0.308 Sum_probs=61.5
Q ss_pred CeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCC-------CCcceeEEecccCCcEEEEEEecCCC-EEEeeCCCcE
Q 003171 193 SVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSD-------DGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGI 264 (842)
Q Consensus 193 ~V~~la~dpdg~~LaSGs~DGtIrlWdl~~g~~~~~-------~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtI 264 (842)
...|+.+....++||.|+.||.+|+-.+.+...+.. ..+..-++|.||.+.|.-+.|..+.+ |-|...+|.|
T Consensus 16 kL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~GlI 95 (1189)
T KOG2041|consen 16 KLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTSGLI 95 (1189)
T ss_pred eEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCCCceE
Confidence 577999999999999999999999999887532111 11222356899999999999998776 6667789999
Q ss_pred EEEeCC
Q 003171 265 KIWPWE 270 (842)
Q Consensus 265 rvWd~~ 270 (842)
-||-+-
T Consensus 96 iVWmly 101 (1189)
T KOG2041|consen 96 IVWMLY 101 (1189)
T ss_pred EEEeee
Confidence 999873
|
|
| >KOG4714 consensus Nucleoporin [Nuclear structure] | Back alignment and domain information |
|---|
Probab=96.76 E-value=0.0017 Score=67.06 Aligned_cols=72 Identities=21% Similarity=0.347 Sum_probs=60.7
Q ss_pred CeEEEEEcCC-CCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCC--CEEEeeCCCcEEEEeC
Q 003171 193 SVMCMVGDEA-SGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYG--DLWSGSEGGGIKIWPW 269 (842)
Q Consensus 193 ~V~~la~dpd-g~~LaSGs~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG--~L~SgS~DgtIrvWd~ 269 (842)
.|.|++.+|. ..+++.|+.||.+-+||+.... ...-.+++|+.+|+-|-|.|.. +|+++|+||.+--||.
T Consensus 181 ~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~-------~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wda 253 (319)
T KOG4714|consen 181 AVTALCSHPAQQHLVCCGTDDGIVGLWDARNVA-------MPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDA 253 (319)
T ss_pred cchhhhCCcccccEEEEecCCCeEEEEEccccc-------chHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcC
Confidence 4999999985 4778899999999999998753 4445679999999999999953 4999999999999997
Q ss_pred CC
Q 003171 270 EA 271 (842)
Q Consensus 270 ~t 271 (842)
.+
T Consensus 254 s~ 255 (319)
T KOG4714|consen 254 ST 255 (319)
T ss_pred CC
Confidence 54
|
|
| >KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.74 E-value=0.0049 Score=71.43 Aligned_cols=68 Identities=19% Similarity=0.368 Sum_probs=52.2
Q ss_pred EEEEcC-CCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecC--CCEEEeeCCCcEEEEeCCC
Q 003171 196 CMVGDE-ASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSY--GDLWSGSEGGGIKIWPWEA 271 (842)
Q Consensus 196 ~la~dp-dg~~LaSGs~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~d--G~L~SgS~DgtIrvWd~~t 271 (842)
-|+++- ++..+|+ +...-|++||...|. ..+..+++|...|+++.|..- +.+++.+.|+|||.||.+.
T Consensus 163 qVkwnyk~p~vlas-shg~~i~vwd~r~gs-------~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~k 233 (1081)
T KOG0309|consen 163 QVKWNYKDPNVLAS-SHGNDIFVWDLRKGS-------TPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSK 233 (1081)
T ss_pred eeeecccCcchhhh-ccCCceEEEeccCCC-------cceEEecccceeeehHHHhhhhhhhhcccCCCCceeeecccc
Confidence 344443 3355555 445679999998874 667889999999999999763 5689999999999999854
|
|
| >smart00320 WD40 WD40 repeats | Back alignment and domain information |
|---|
Probab=96.68 E-value=0.0038 Score=43.36 Aligned_cols=37 Identities=38% Similarity=0.636 Sum_probs=32.3
Q ss_pred ceeEEecccCCcEEEEEEecCCC-EEEeeCCCcEEEEe
Q 003171 232 GEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWP 268 (842)
Q Consensus 232 ~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd 268 (842)
.....+.+|...|+++.|.+++. +++++.|+.+++|+
T Consensus 3 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 3 ELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 45667789999999999999877 68999999999996
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. |
| >COG3568 ElsH Metal-dependent hydrolase [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.66 E-value=0.017 Score=61.01 Aligned_cols=55 Identities=18% Similarity=0.275 Sum_probs=41.0
Q ss_pred ccCceeeceeec--ccCcccCCCCeeEEEEEEe-CeEEEEEeecCcCCcchHHHHHHHHHHHHHh
Q 003171 657 YVGDVDVAAVPC--GFGRAIGNKGAVGLRVRVY-DRIMCFVNCHFAAHLEAVNRRNADFDHVYRT 718 (842)
Q Consensus 657 ~i~~v~~~~v~~--G~~~~~gnKG~v~i~~~i~-~~~~~Fv~~HLaa~~~~~~~Rn~~~~~I~~~ 718 (842)
.|.+|+...+++ |+- -.|++-+.+... +..|-++|.||.=. -+.|.+++..|+..
T Consensus 101 pi~~v~~~~lp~~~~~~----~Rgal~a~~~~~~g~~l~V~~~HL~l~---~~~R~~Q~~~L~~~ 158 (259)
T COG3568 101 PIRDVENLALPDPTGLE----PRGALLAEIELPGGKPLRVINAHLGLS---EESRLRQAAALLAL 158 (259)
T ss_pred cccchhhccCCCCCCCC----CceeEEEEEEcCCCCEEEEEEEecccc---HHHHHHHHHHHHhh
Confidence 355666665554 432 479999999884 77999999999933 35688999999884
|
|
| >PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal | Back alignment and domain information |
|---|
Probab=96.65 E-value=0.18 Score=53.37 Aligned_cols=66 Identities=11% Similarity=0.145 Sum_probs=45.6
Q ss_pred EEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEec------cc-CCcEEEEEEecCC-------CEEEeeC
Q 003171 195 MCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQ------AH-RGPVLSLCISSYG-------DLWSGSE 260 (842)
Q Consensus 195 ~~la~dpdg~~LaSGs~DGtIrlWdl~~g~~~~~~~~~~~~~l~------gH-~~~V~slafs~dG-------~L~SgS~ 260 (842)
.-+++|||+.+||.+..-|+|+++|+.+. ++..+. +- ..+|.+|.|.+.- +|+.-..
T Consensus 47 Rkl~WSpD~tlLa~a~S~G~i~vfdl~g~---------~lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y 117 (282)
T PF15492_consen 47 RKLAWSPDCTLLAYAESTGTIRVFDLMGS---------ELFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINY 117 (282)
T ss_pred eEEEECCCCcEEEEEcCCCeEEEEecccc---------eeEEcCcccccCCccccceeeeEeeccccccccceeEEEEec
Confidence 45899999999999999999999999874 222221 11 4678888887653 2444445
Q ss_pred CCcEEEEeC
Q 003171 261 GGGIKIWPW 269 (842)
Q Consensus 261 DgtIrvWd~ 269 (842)
+|.+|-+-+
T Consensus 118 ~G~L~Sy~v 126 (282)
T PF15492_consen 118 RGQLRSYLV 126 (282)
T ss_pred cceeeeEEE
Confidence 555555544
|
|
| >COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown] | Back alignment and domain information |
|---|
Probab=96.52 E-value=0.99 Score=50.73 Aligned_cols=108 Identities=13% Similarity=0.101 Sum_probs=74.8
Q ss_pred CCceEEEEECCCCc-EEEEeCCC-eEEEEcCCCCeeeeeecCCccEEEE--EecCCEEEEEecCcEEEEEeCC-Cccccc
Q 003171 419 NRRTEALTTSIDGM-IWTGGANG-LLLQWDPNGNRLQDFQYLPFAVQCL--CTFGSQIWVGYMNGIVQVLDLE-GNLLGG 493 (842)
Q Consensus 419 ~~~v~al~~s~dg~-l~Sgs~Dg-tIrlWD~~g~~l~~l~~H~~~V~sl--s~dG~~LasGs~DgtIrlWD~~-g~~i~~ 493 (842)
...|.-..+..++. ++.|..|| .+-++|..|...+.+...-+.|-++ +++|++++++-....|.+.|++ |+....
T Consensus 359 ~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~kr~e~~lg~I~av~vs~dGK~~vvaNdr~el~vididngnv~~i 438 (668)
T COG4946 359 KGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVKRIEKDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGNVRLI 438 (668)
T ss_pred CCceEEEEEccCCcceEEeccCCceEEEEecCCceEEEeeCCccceEEEEEcCCCcEEEEEcCceEEEEEEecCCCeeEe
Confidence 33455445555554 78888888 8999999776777777777778876 4689999998877788888987 665555
Q ss_pred ccccccCEEEEEe--CCCEEEEEc----CCCCeeecccc
Q 003171 494 WVAHSSPVIKMAV--GAGYIFTLA----NHGGIRGWNVT 526 (842)
Q Consensus 494 l~gH~~~V~sla~--dg~~l~S~S----~DgtIrvWd~~ 526 (842)
-+...+-|+.+.+ ++++++-+= .-..|+++|+.
T Consensus 439 dkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~ 477 (668)
T COG4946 439 DKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMD 477 (668)
T ss_pred cccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecC
Confidence 5556667777764 556666333 23456666644
|
|
| >KOG1912 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.42 E-value=0.47 Score=56.15 Aligned_cols=110 Identities=17% Similarity=0.132 Sum_probs=74.2
Q ss_pred CCEEEE-ecCCCEEEEeCCCCccccccccccccCCCCCCCCCCeeeeeecCCCeEEEEEcCC------------CCEEEE
Q 003171 142 EEQLWA-GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEA------------SGVVWS 208 (842)
Q Consensus 142 ~~~l~~-~~D~~vrvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~V~~la~dpd------------g~~LaS 208 (842)
...|++ |+.+.|-|-|..+.+.... + .+| .+.|..+.+.|. .-+||+
T Consensus 25 ~~GLiAygshslV~VVDs~s~q~iqs-i------------------e~h-~s~V~~VrWap~~~p~~llS~~~~~lliAs 84 (1062)
T KOG1912|consen 25 PSGLIAYGSHSLVSVVDSRSLQLIQS-I------------------ELH-QSAVTSVRWAPAPSPRDLLSPSSSQLLIAS 84 (1062)
T ss_pred ccceEEEecCceEEEEehhhhhhhhc-c------------------ccC-ccceeEEEeccCCCchhccCccccceeEEe
Confidence 335666 6777888888755443321 0 022 455666666552 136888
Q ss_pred EeCCCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecC---CC--EEEeeCCCcEEEEeCCCccceeecC
Q 003171 209 GHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSY---GD--LWSGSEGGGIKIWPWEAIEKALSLK 279 (842)
Q Consensus 209 Gs~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~d---G~--L~SgS~DgtIrvWd~~t~~~~l~~~ 279 (842)
+...|.|.+||...+ ..+..++.|..+|..|+|-+. .+ |+.=..-.+|-+|+.+++++-.++.
T Consensus 85 aD~~GrIil~d~~~~--------s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ 152 (1062)
T KOG1912|consen 85 ADISGRIILVDFVLA--------SVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYD 152 (1062)
T ss_pred ccccCcEEEEEehhh--------hhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccc
Confidence 888999999999886 445556788999999999764 32 4444445789999999988765553
|
|
| >COG0708 XthA Exonuclease III [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=96.40 E-value=0.015 Score=61.42 Aligned_cols=110 Identities=21% Similarity=0.314 Sum_probs=64.9
Q ss_pred EEEEEEeCCCCCCcccccccccCCCCCceEEEEEeecccCccchhhhhhhhhhcccCCCcchhhHHHHHhhhccCCC-ce
Q 003171 555 LAGTWNVGQGRASQDALISWLGSAASDVGIVVVGLQEVEMGAGFLAMSAAKETVGLEGSAVGHWWLDMIGKILDDGS-TF 633 (842)
Q Consensus 555 ~~~twNv~~~~~~~~~l~~~l~~~~~~~di~viglQE~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~l~~~l~~~~-~y 633 (842)
-+.|||||+-+.....+.+||.. ..|| ||||||+.....-+. + ..+. .+ |+ .|
T Consensus 2 kI~SwNVNgiRar~~~~~~~l~~--~~pD--VlclQEtK~~~~~fp----~---------------~~~~-~~--GY~~~ 55 (261)
T COG0708 2 KIASWNVNGLRARLKKLLDWLEE--EQPD--VLCLQETKAQDEQFP----R---------------EELE-AL--GYHHV 55 (261)
T ss_pred eeEEEehhhHHHHHHHHHHHHHH--hCCC--EEEEEecccCcccCC----H---------------hHHh-hC--CceEE
Confidence 47899999987766668899986 3446 578999865322110 0 0111 12 33 33
Q ss_pred EEEeeeeceeeEEEEEEeccccCccCceeeceeecccCccc-CCCCeeEEEEEEeCeEEEEEeecCcCCcc
Q 003171 634 ERVGSRQLAGLLIAVWVRKNLKDYVGDVDVAAVPCGFGRAI-GNKGAVGLRVRVYDRIMCFVNCHFAAHLE 703 (842)
Q Consensus 634 ~~v~s~~l~g~~l~vf~r~~~~~~i~~v~~~~v~~G~~~~~-gnKG~v~i~~~i~~~~~~Fv~~HLaa~~~ 703 (842)
..-+.+.-.|+ ++++|.... .|..|+++.- -..=+=.|...+.+ |.++|.=++.++.
T Consensus 56 ~~~gqKgysGV--ailsr~~~~---------~v~~g~~~~~~~d~e~R~I~a~~~~--~~v~~~Y~PnG~~ 113 (261)
T COG0708 56 FNHGQKGYSGV--AILSKKPPD---------DVRRGFPGEEEDDEEGRVIEAEFDG--FRVINLYFPNGSS 113 (261)
T ss_pred EecCcCCcceE--EEEEccCch---------hhhcCCCCCccccccCcEEEEEECC--EEEEEEEcCCCCC
Confidence 33444444555 567787664 5567877521 11223344555555 8889999998876
|
|
| >PRK04043 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=96.24 E-value=1.4 Score=50.76 Aligned_cols=99 Identities=9% Similarity=0.003 Sum_probs=51.7
Q ss_pred EECCCCc-EEEEe-CCC--eEEEEcCCCCeeeeeecCCccEEEEEecCCEEEEEecC---------cEEEEEeCCCcccc
Q 003171 426 TTSIDGM-IWTGG-ANG--LLLQWDPNGNRLQDFQYLPFAVQCLCTFGSQIWVGYMN---------GIVQVLDLEGNLLG 492 (842)
Q Consensus 426 ~~s~dg~-l~Sgs-~Dg--tIrlWD~~g~~l~~l~~H~~~V~sls~dG~~LasGs~D---------gtIrlWD~~g~~i~ 492 (842)
.++|||+ |+-.+ ..+ .|.+.|+++...+.+.........+++||++|+..+.. ..|.+.|+++...+
T Consensus 283 ~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~g~~~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~ 362 (419)
T PRK04043 283 NFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFHGKNNSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIR 362 (419)
T ss_pred EECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccCCCcCceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeE
Confidence 4677775 54333 222 57777885433322222111223778999987765543 36788888743333
Q ss_pred ccccc-ccCEEEEEeCCCEEEEEcCC-CCeeecc
Q 003171 493 GWVAH-SSPVIKMAVGAGYIFTLANH-GGIRGWN 524 (842)
Q Consensus 493 ~l~gH-~~~V~sla~dg~~l~S~S~D-gtIrvWd 524 (842)
.++.. ...-.+.++||+.++-.+.+ +.-.+|-
T Consensus 363 ~LT~~~~~~~p~~SPDG~~I~f~~~~~~~~~L~~ 396 (419)
T PRK04043 363 RLTANGVNQFPRFSSDGGSIMFIKYLGNQSALGI 396 (419)
T ss_pred ECCCCCCcCCeEECCCCCEEEEEEccCCcEEEEE
Confidence 33322 11223456788877644433 3333443
|
|
| >PLN03144 Carbon catabolite repressor protein 4 homolog; Provisional | Back alignment and domain information |
|---|
Probab=96.23 E-value=0.022 Score=67.36 Aligned_cols=31 Identities=16% Similarity=0.373 Sum_probs=24.5
Q ss_pred eEEEEEeecCcCCcchHHHHHHHHHHHHHhc
Q 003171 689 RIMCFVNCHFAAHLEAVNRRNADFDHVYRTM 719 (842)
Q Consensus 689 ~~~~Fv~~HLaa~~~~~~~Rn~~~~~I~~~l 719 (842)
..||++|+||-.+...-.-|..+...|++.+
T Consensus 417 ~~l~VaNTHL~~~p~~~dvRl~Q~~~Ll~~l 447 (606)
T PLN03144 417 QLLCVANTHIHANQELKDVKLWQVHTLLKGL 447 (606)
T ss_pred cEEEEEEeeeccCCccchhHHHHHHHHHHHH
Confidence 3699999999777665667778888888775
|
|
| >COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.21 E-value=2.5 Score=46.20 Aligned_cols=117 Identities=12% Similarity=0.145 Sum_probs=74.2
Q ss_pred CeEEEEEcCCCCEEEEEeCC-CcEEEEECCCCccCCCCCcceeEEecccCCc----------EEEEEEecCCC-EEEee-
Q 003171 193 SVMCMVGDEASGVVWSGHRD-GRIMCWKMNARLLDSDDGFGEVLSWQAHRGP----------VLSLCISSYGD-LWSGS- 259 (842)
Q Consensus 193 ~V~~la~dpdg~~LaSGs~D-GtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~----------V~slafs~dG~-L~SgS- 259 (842)
+-.-+++|++|+.|+++.+- |.|.+.-+... ...........|.++ +.+..|+|+|+ |++..
T Consensus 90 ~p~yvsvd~~g~~vf~AnY~~g~v~v~p~~~d-----G~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DL 164 (346)
T COG2706 90 PPCYVSVDEDGRFVFVANYHSGSVSVYPLQAD-----GSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDL 164 (346)
T ss_pred CCeEEEECCCCCEEEEEEccCceEEEEEcccC-----CccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeec
Confidence 44779999999999999876 58899988652 112233334456555 88999999998 56554
Q ss_pred -CCCcEEEEeCCCccceeecCCCceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcCCCCEEEEeC--CCcEEE
Q 003171 260 -EGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG--FLSFAL 336 (842)
Q Consensus 260 -~DgtIrvWd~~t~~~~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s--~~tI~l 336 (842)
.| .|.+++++.+. ++... .. .. .+...-+.+++.+++..+.... +.+|.+
T Consensus 165 G~D-ri~~y~~~dg~--L~~~~-~~----------------~v-------~~G~GPRHi~FHpn~k~aY~v~EL~stV~v 217 (346)
T COG2706 165 GTD-RIFLYDLDDGK--LTPAD-PA----------------EV-------KPGAGPRHIVFHPNGKYAYLVNELNSTVDV 217 (346)
T ss_pred CCc-eEEEEEcccCc--ccccc-cc----------------cc-------CCCCCcceEEEcCCCcEEEEEeccCCEEEE
Confidence 34 57888886432 11100 00 00 0122346677777777666665 468999
Q ss_pred EEccC
Q 003171 337 WDART 341 (842)
Q Consensus 337 WD~~t 341 (842)
|....
T Consensus 218 ~~y~~ 222 (346)
T COG2706 218 LEYNP 222 (346)
T ss_pred EEEcC
Confidence 98876
|
|
| >PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats | Back alignment and domain information |
|---|
Probab=96.20 E-value=0.02 Score=65.68 Aligned_cols=71 Identities=18% Similarity=0.226 Sum_probs=58.4
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCCC-EEEeeCCCcEEEEeC
Q 003171 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPW 269 (842)
Q Consensus 191 ~~~V~~la~dpdg~~LaSGs~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~ 269 (842)
.+.|.|++++|+...++.|..||+|++||...+ ..++.-+.=..+.++++|+|. ++.|+.-|-|.+||+
T Consensus 259 ~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~----------~t~~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ 328 (545)
T PF11768_consen 259 PSQVICCARSPSEDKLVLGCEDGSIILYDTTRG----------VTLLAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDM 328 (545)
T ss_pred CCcceEEecCcccceEEEEecCCeEEEEEcCCC----------eeeeeeecccceEEEEcCCCcEEEEEcCCceEEEEEe
Confidence 568999999999999999999999999998774 222222334568899999998 578999999999998
Q ss_pred CC
Q 003171 270 EA 271 (842)
Q Consensus 270 ~t 271 (842)
.-
T Consensus 329 AL 330 (545)
T PF11768_consen 329 AL 330 (545)
T ss_pred ec
Confidence 54
|
|
| >COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.12 E-value=0.097 Score=55.53 Aligned_cols=110 Identities=11% Similarity=0.060 Sum_probs=65.6
Q ss_pred eEEEEECCCCc--EEEEeCCCeEEEEcCCC--Cee---eeeec------C------CccEEEE--EecCCEEEEEecCcE
Q 003171 422 TEALTTSIDGM--IWTGGANGLLLQWDPNG--NRL---QDFQY------L------PFAVQCL--CTFGSQIWVGYMNGI 480 (842)
Q Consensus 422 v~al~~s~dg~--l~Sgs~DgtIrlWD~~g--~~l---~~l~~------H------~~~V~sl--s~dG~~LasGs~Dgt 480 (842)
|++..|+|... +.-.+..|+|++-|+.. -|. +.+.. | ...|..+ ++.|++|++-+. -+
T Consensus 224 ItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-lt 302 (460)
T COG5170 224 ITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LT 302 (460)
T ss_pred HhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ce
Confidence 44455666533 33345578999999842 121 11211 1 1223333 346889988654 48
Q ss_pred EEEEeCC--Ccccccccccc------------cCEEE---EEe--CCCEEEEEcCCCCeeeccccCCCCCc
Q 003171 481 VQVLDLE--GNLLGGWVAHS------------SPVIK---MAV--GAGYIFTLANHGGIRGWNVTSPGPLD 532 (842)
Q Consensus 481 IrlWD~~--g~~i~~l~gH~------------~~V~s---la~--dg~~l~S~S~DgtIrvWd~~~~~~~d 532 (842)
|+|||+. .+++.+..-|. +.|.. +.+ |.+.++|||..+.--++...+.++.|
T Consensus 303 vkiwDvnm~k~pikTi~~h~~l~~~l~d~YEnDaifdkFeisfSgd~~~v~sgsy~NNfgiyp~~ssg~~D 373 (460)
T COG5170 303 VKIWDVNMAKNPIKTIPMHCDLMDELNDVYENDAIFDKFEISFSGDDKHVLSGSYSNNFGIYPTDSSGFKD 373 (460)
T ss_pred EEEEecccccCCceeechHHHHHHHHHhhhhccceeeeEEEEecCCcccccccccccceeeeccccCCCCc
Confidence 9999986 46777776653 44443 223 56789999998887777755555544
|
|
| >KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.10 E-value=0.11 Score=57.07 Aligned_cols=73 Identities=12% Similarity=0.116 Sum_probs=62.5
Q ss_pred CCCeEEEEEcCCCC-EEEEEeCCCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCCC--EEEeeCCCcEEEE
Q 003171 191 VSSVMCMVGDEASG-VVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD--LWSGSEGGGIKIW 267 (842)
Q Consensus 191 ~~~V~~la~dpdg~-~LaSGs~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~--L~SgS~DgtIrvW 267 (842)
+..|..++|+|... +|..++.+.+|+|.|+++. ....+..+| +.+++++|+-|.. |+.|-..|.|-|+
T Consensus 193 g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~--------~~vssy~a~-~~~wSC~wDlde~h~IYaGl~nG~Vlvy 263 (463)
T KOG1645|consen 193 GSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETS--------CVVSSYIAY-NQIWSCCWDLDERHVIYAGLQNGMVLVY 263 (463)
T ss_pred chhhhhhccCccccceeeeeccCceEEEEecccc--------eeeeheecc-CCceeeeeccCCcceeEEeccCceEEEE
Confidence 66799999999775 8999999999999999985 345566777 7999999998875 7899999999999
Q ss_pred eCCCc
Q 003171 268 PWEAI 272 (842)
Q Consensus 268 d~~t~ 272 (842)
|+...
T Consensus 264 D~R~~ 268 (463)
T KOG1645|consen 264 DMRQP 268 (463)
T ss_pred EccCC
Confidence 99653
|
|
| >KOG4714 consensus Nucleoporin [Nuclear structure] | Back alignment and domain information |
|---|
Probab=95.85 E-value=0.011 Score=61.26 Aligned_cols=66 Identities=23% Similarity=0.425 Sum_probs=55.5
Q ss_pred cEEEEEec---CCEEEEEecCcEEEEEeCC--CcccccccccccCEEEEEe---CCCEEEEEcCCCCeeecccc
Q 003171 461 AVQCLCTF---GSQIWVGYMNGIVQVLDLE--GNLLGGWVAHSSPVIKMAV---GAGYIFTLANHGGIRGWNVT 526 (842)
Q Consensus 461 ~V~sls~d---G~~LasGs~DgtIrlWD~~--g~~i~~l~gH~~~V~sla~---dg~~l~S~S~DgtIrvWd~~ 526 (842)
.|.+++.+ ...++.|+.||.|-|||.+ ..+...+.+|..+|+.|-+ ++..|+++|.||.+.-||..
T Consensus 181 ~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas 254 (319)
T KOG4714|consen 181 AVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAS 254 (319)
T ss_pred cchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCC
Confidence 47777653 3478889999999999986 3567889999999999985 67899999999999999954
|
|
| >PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region | Back alignment and domain information |
|---|
Probab=95.84 E-value=0.28 Score=45.09 Aligned_cols=89 Identities=19% Similarity=0.187 Sum_probs=60.9
Q ss_pred CCCCc--EEEEeCCCeEEEEcCCCCeeeeeecCCccEEEEEe-cCCEEEEEecCcEEEEEeCCCcccccccccccCEEEE
Q 003171 428 SIDGM--IWTGGANGLLLQWDPNGNRLQDFQYLPFAVQCLCT-FGSQIWVGYMNGIVQVLDLEGNLLGGWVAHSSPVIKM 504 (842)
Q Consensus 428 s~dg~--l~Sgs~DgtIrlWD~~g~~l~~l~~H~~~V~sls~-dG~~LasGs~DgtIrlWD~~g~~i~~l~gH~~~V~sl 504 (842)
..||. |+.||.|..||+|+-+ +.+.+++- +..|.+|.. .+.+++-|-.+|||-+|+-..++-+.-..| .+.++
T Consensus 11 d~dg~~eLlvGs~D~~IRvf~~~-e~~~Ei~e-~~~v~~L~~~~~~~F~Y~l~NGTVGvY~~~~RlWRiKSK~--~~~~~ 86 (111)
T PF14783_consen 11 DGDGENELLVGSDDFEIRVFKGD-EIVAEITE-TDKVTSLCSLGGGRFAYALANGTVGVYDRSQRLWRIKSKN--QVTSM 86 (111)
T ss_pred CCCCcceEEEecCCcEEEEEeCC-cEEEEEec-ccceEEEEEcCCCEEEEEecCCEEEEEeCcceeeeeccCC--CeEEE
Confidence 34543 9999999999999954 56666653 578888876 456888889999999998754443333333 36776
Q ss_pred E-eC----CC-EEEEEcCCCCe
Q 003171 505 A-VG----AG-YIFTLANHGGI 520 (842)
Q Consensus 505 a-~d----g~-~l~S~S~DgtI 520 (842)
+ .| |. -|++|=.+|.|
T Consensus 87 ~~~D~~gdG~~eLI~GwsnGkv 108 (111)
T PF14783_consen 87 AFYDINGDGVPELIVGWSNGKV 108 (111)
T ss_pred EEEcCCCCCceEEEEEecCCeE
Confidence 5 22 22 36666666654
|
|
| >PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function | Back alignment and domain information |
|---|
Probab=95.82 E-value=2.3 Score=46.26 Aligned_cols=68 Identities=15% Similarity=0.118 Sum_probs=41.0
Q ss_pred EEEcC-CCCEEEEEeCCCc-EEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCCC-EEE-----eeCCCcEEEEe
Q 003171 197 MVGDE-ASGVVWSGHRDGR-IMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWS-----GSEGGGIKIWP 268 (842)
Q Consensus 197 la~dp-dg~~LaSGs~DGt-IrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~S-----gS~DgtIrvWd 268 (842)
++.+| +...++-+-.-|+ ..+||..++..-..-....-+.|-|| -+||+||+ |++ .+..|.|-|||
T Consensus 10 ~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGH------g~fs~dG~~LytTEnd~~~g~G~IgVyd 83 (305)
T PF07433_consen 10 VAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGH------GVFSPDGRLLYTTENDYETGRGVIGVYD 83 (305)
T ss_pred eeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecC------EEEcCCCCEEEEeccccCCCcEEEEEEE
Confidence 45666 5566777777775 45788877620000000112344556 47999998 554 34468999999
Q ss_pred CC
Q 003171 269 WE 270 (842)
Q Consensus 269 ~~ 270 (842)
+.
T Consensus 84 ~~ 85 (305)
T PF07433_consen 84 AA 85 (305)
T ss_pred Cc
Confidence 97
|
|
| >PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal | Back alignment and domain information |
|---|
Probab=95.81 E-value=1.4 Score=46.86 Aligned_cols=68 Identities=12% Similarity=0.046 Sum_probs=42.1
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEecccCC---cEEEEEEecCCC-EEEeeCCCcEEEEeCCC
Q 003171 197 MVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRG---PVLSLCISSYGD-LWSGSEGGGIKIWPWEA 271 (842)
Q Consensus 197 la~dpdg~~LaSGs~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~---~V~slafs~dG~-L~SgS~DgtIrvWd~~t 271 (842)
++.+++|++||. -+|..|.+-...... . ..+.+.+-+++ .=.-|+||||+. |+-+...|+|+++|+.+
T Consensus 3 ~~~~~~Gk~lAi-~qd~~iEiRsa~Ddf----~--si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g 74 (282)
T PF15492_consen 3 LALSSDGKLLAI-LQDQCIEIRSAKDDF----S--SIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMG 74 (282)
T ss_pred eeecCCCcEEEE-EeccEEEEEeccCCc----h--heeEEEecCCCCCchheEEEECCCCcEEEEEcCCCeEEEEeccc
Confidence 455667777765 466666665544321 0 11122222222 246789999998 56788889999999965
|
|
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.75 E-value=0.1 Score=61.75 Aligned_cols=95 Identities=12% Similarity=0.242 Sum_probs=70.7
Q ss_pred CCc-EEEEeCCCeEEEEcC-CCCeeeeeecCCccEEEEEec-------CCEEEEEecCcEEEEEeCC--Ccccc-ccccc
Q 003171 430 DGM-IWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQCLCTF-------GSQIWVGYMNGIVQVLDLE--GNLLG-GWVAH 497 (842)
Q Consensus 430 dg~-l~Sgs~DgtIrlWD~-~g~~l~~l~~H~~~V~sls~d-------G~~LasGs~DgtIrlWD~~--g~~i~-~l~gH 497 (842)
+|. ++|||.||+|.+-.+ +++...++.- ..++.+++.+ .++.++|+.-| +.+.... |+... .+..-
T Consensus 82 ~Gey~asCS~DGkv~I~sl~~~~~~~~~df-~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~ 159 (846)
T KOG2066|consen 82 EGEYVASCSDDGKVVIGSLFTDDEITQYDF-KRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEG 159 (846)
T ss_pred CCceEEEecCCCcEEEeeccCCccceeEec-CCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecC
Confidence 454 999999999999988 6655444432 3577777643 45899999888 8888765 44322 35556
Q ss_pred ccCEEEEEeCCCEEEEEcCCCCeeeccccC
Q 003171 498 SSPVIKMAVGAGYIFTLANHGGIRGWNVTS 527 (842)
Q Consensus 498 ~~~V~sla~dg~~l~S~S~DgtIrvWd~~~ 527 (842)
.++|.++.+.|+++||++.+| ||++|...
T Consensus 160 eG~I~~i~W~g~lIAWand~G-v~vyd~~~ 188 (846)
T KOG2066|consen 160 EGPIHSIKWRGNLIAWANDDG-VKVYDTPT 188 (846)
T ss_pred ccceEEEEecCcEEEEecCCC-cEEEeccc
Confidence 689999999999999998776 89999654
|
|
| >KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=95.70 E-value=2.6 Score=48.46 Aligned_cols=69 Identities=19% Similarity=0.205 Sum_probs=49.2
Q ss_pred EEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCCC-EEEee-----------CCC
Q 003171 195 MCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGS-----------EGG 262 (842)
Q Consensus 195 ~~la~dpdg~~LaSGs~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS-----------~Dg 262 (842)
+-+.+||-|.+|+|=+..|. .+|--.. +..++.+ .|. .|.-+.|||.-+ |+|=| +..
T Consensus 214 tyv~wSP~GTYL~t~Hk~GI-~lWGG~~--------f~r~~RF-~Hp-~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~ 282 (698)
T KOG2314|consen 214 TYVRWSPKGTYLVTFHKQGI-ALWGGES--------FDRIQRF-YHP-GVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQ 282 (698)
T ss_pred eeEEecCCceEEEEEeccce-eeecCcc--------HHHHHhc-cCC-CceeeecCCccceEEEecCCccccCcccCCCc
Confidence 34789999999999999885 4994333 3444433 354 577889999876 76533 236
Q ss_pred cEEEEeCCCccc
Q 003171 263 GIKIWPWEAIEK 274 (842)
Q Consensus 263 tIrvWd~~t~~~ 274 (842)
.++|||+.++..
T Consensus 283 ~l~IWDI~tG~l 294 (698)
T KOG2314|consen 283 QLIIWDIATGLL 294 (698)
T ss_pred eEEEEEccccch
Confidence 899999988653
|
|
| >KOG1912 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.60 E-value=0.1 Score=61.37 Aligned_cols=47 Identities=21% Similarity=0.160 Sum_probs=39.7
Q ss_pred EEEEEeCCCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCCCEEEee
Q 003171 205 VVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGDLWSGS 259 (842)
Q Consensus 205 ~LaSGs~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~L~SgS 259 (842)
++|.|...|+|-+.|+.++ ..-..+..|+..|.++-|..+..|+|.+
T Consensus 439 LvAvGT~sGTV~vvdvst~--------~v~~~fsvht~~VkgleW~g~sslvSfs 485 (1062)
T KOG1912|consen 439 LVAVGTNSGTVDVVDVSTN--------AVAASFSVHTSLVKGLEWLGNSSLVSFS 485 (1062)
T ss_pred eEEeecCCceEEEEEecch--------hhhhhhcccccceeeeeeccceeEEEee
Confidence 6899999999999999986 3445678899999999998877777654
|
|
| >KOG2444 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.52 E-value=0.03 Score=57.39 Aligned_cols=98 Identities=14% Similarity=0.192 Sum_probs=68.3
Q ss_pred CCcEEEEeCCCeEEEEcCC--CCeeeeeecCCccEEEEEe---cCCEEEEEecCcEEEEEeCC-Ccccccccccc-cCEE
Q 003171 430 DGMIWTGGANGLLLQWDPN--GNRLQDFQYLPFAVQCLCT---FGSQIWVGYMNGIVQVLDLE-GNLLGGWVAHS-SPVI 502 (842)
Q Consensus 430 dg~l~Sgs~DgtIrlWD~~--g~~l~~l~~H~~~V~sls~---dG~~LasGs~DgtIrlWD~~-g~~i~~l~gH~-~~V~ 502 (842)
+..++.|+.||.|.+|..+ |.....+..-.+.|-+.-+ ++.+.++|..||.||.|+.+ ++.+.....|+ .++.
T Consensus 70 ~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e 149 (238)
T KOG2444|consen 70 SAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGE 149 (238)
T ss_pred CceEEeecccceEEEecCCccchHHHhhhcccccceeccccccccceeEEeccCCceeeeccccCceeeeeccccCCCcc
Confidence 3458889999999999885 4333333333455666655 35589999999999999987 66666666777 4554
Q ss_pred EEE--eCCCEEEEE--cCCCCeeeccccC
Q 003171 503 KMA--VGAGYIFTL--ANHGGIRGWNVTS 527 (842)
Q Consensus 503 sla--~dg~~l~S~--S~DgtIrvWd~~~ 527 (842)
.+. ..++.+.++ |.|..++.|++..
T Consensus 150 ~~ivv~sd~~i~~a~~S~d~~~k~W~ve~ 178 (238)
T KOG2444|consen 150 ELIVVGSDEFLKIADTSHDRVLKKWNVEK 178 (238)
T ss_pred eeEEecCCceEEeeccccchhhhhcchhh
Confidence 433 355667776 8888888888653
|
|
| >smart00320 WD40 WD40 repeats | Back alignment and domain information |
|---|
Probab=95.41 E-value=0.038 Score=37.98 Aligned_cols=36 Identities=14% Similarity=0.127 Sum_probs=21.7
Q ss_pred CeeeeeecCCccEEEEEe--cCCEEEEEecCcEEEEEe
Q 003171 450 NRLQDFQYLPFAVQCLCT--FGSQIWVGYMNGIVQVLD 485 (842)
Q Consensus 450 ~~l~~l~~H~~~V~sls~--dG~~LasGs~DgtIrlWD 485 (842)
+++..+..|...|+++.. .+.++++|+.|+.|++||
T Consensus 3 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 3 ELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 345555566666666654 245666666666666664
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. |
| >KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=95.36 E-value=0.05 Score=65.01 Aligned_cols=96 Identities=16% Similarity=0.183 Sum_probs=77.2
Q ss_pred EEEEeCCCeEEEEcCC-CCeeeeeecCCccEEEEEecCCEEEEEecCcEEEEEeCC-CcccccccccccCEEEEEeCCCE
Q 003171 433 IWTGGANGLLLQWDPN-GNRLQDFQYLPFAVQCLCTFGSQIWVGYMNGIVQVLDLE-GNLLGGWVAHSSPVIKMAVGAGY 510 (842)
Q Consensus 433 l~Sgs~DgtIrlWD~~-g~~l~~l~~H~~~V~sls~dG~~LasGs~DgtIrlWD~~-g~~i~~l~gH~~~V~sla~dg~~ 510 (842)
++-|+-...+...|++ ++..++.......|.-+...++++.+|...|+|-|-|++ -+.++++.+|++.|..+...|+.
T Consensus 150 ~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR~Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSDfDv~GNl 229 (1118)
T KOG1275|consen 150 LIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMRYNNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISDFDVQGNL 229 (1118)
T ss_pred eeecchhhheeeeecccceeeeeeeccCCceEEEEecCcEEEeecccceEEeecCCcCceeeeeeccccceeeeeccCCe
Confidence 4445545557788995 455555554455587788899999999999999999998 46799999999999999999999
Q ss_pred EEEEcC---------CCCeeeccccCC
Q 003171 511 IFTLAN---------HGGIRGWNVTSP 528 (842)
Q Consensus 511 l~S~S~---------DgtIrvWd~~~~ 528 (842)
|+|+|. |..|+|||++..
T Consensus 230 LitCG~S~R~~~l~~D~FvkVYDLRmm 256 (1118)
T KOG1275|consen 230 LITCGYSMRRYNLAMDPFVKVYDLRMM 256 (1118)
T ss_pred EEEeecccccccccccchhhhhhhhhh
Confidence 999884 678999998753
|
|
| >KOG4532 consensus WD40-like repeat containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.23 E-value=1.2 Score=46.88 Aligned_cols=73 Identities=8% Similarity=-0.058 Sum_probs=54.7
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCCC-EEEeeCCCcEEEEeCCC
Q 003171 194 VMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEA 271 (842)
Q Consensus 194 V~~la~dpdg~~LaSGs~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~~t 271 (842)
+.++++|+|++++++-+.-..|-.+.++... ...+......-++.=.+..|+.... +++++.||++.|||+..
T Consensus 161 ~ns~~~snd~~~~~~Vgds~~Vf~y~id~~s-----ey~~~~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~ 234 (344)
T KOG4532|consen 161 QNSLHYSNDPSWGSSVGDSRRVFRYAIDDES-----EYIENIYEAPTSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRN 234 (344)
T ss_pred eeeeEEcCCCceEEEecCCCcceEEEeCCcc-----ceeeeeEecccCCCceeeeeccCcceEEEEecCCcEEEEEecc
Confidence 7889999999999999888888888887642 1111112233345567788888765 78999999999999965
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.23 E-value=1.3 Score=53.15 Aligned_cols=80 Identities=11% Similarity=0.200 Sum_probs=52.5
Q ss_pred CceEEEEECCCCc--EEEEeCCCeEEEEcCCCCe--eeeeecCCccEEEEEe-cCCE-EEEEecCcEEEEEeCCCc-ccc
Q 003171 420 RRTEALTTSIDGM--IWTGGANGLLLQWDPNGNR--LQDFQYLPFAVQCLCT-FGSQ-IWVGYMNGIVQVLDLEGN-LLG 492 (842)
Q Consensus 420 ~~v~al~~s~dg~--l~Sgs~DgtIrlWD~~g~~--l~~l~~H~~~V~sls~-dG~~-LasGs~DgtIrlWD~~g~-~i~ 492 (842)
..|+.|++-.|++ +.+++.. .|.++.++|+- ++.+..|...++|.++ +++. +++| .+..|.+||..++ ..-
T Consensus 172 ~pITgL~~~~d~~s~lFv~Tt~-~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIca-~~e~l~fY~sd~~~~cf 249 (933)
T KOG2114|consen 172 EPITGLALRSDGKSVLFVATTE-QVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFICA-GSEFLYFYDSDGRGPCF 249 (933)
T ss_pred CCceeeEEecCCceeEEEEecc-eeEEEEecCCCcceeeeccCCccceeeecCCCCccEEEe-cCceEEEEcCCCcceee
Confidence 3466677767776 3455544 59999997765 5667778889999876 4554 4443 4567999998753 344
Q ss_pred ccc-ccccCE
Q 003171 493 GWV-AHSSPV 501 (842)
Q Consensus 493 ~l~-gH~~~V 501 (842)
++. ||....
T Consensus 250 af~~g~kk~~ 259 (933)
T KOG2114|consen 250 AFEVGEKKEM 259 (933)
T ss_pred eecCCCeEEE
Confidence 454 665443
|
|
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.99 E-value=0.5 Score=56.23 Aligned_cols=110 Identities=15% Similarity=0.172 Sum_probs=69.1
Q ss_pred cCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecC------CCEEEeeCCCcEEEEeCCCc-
Q 003171 200 DEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSY------GDLWSGSEGGGIKIWPWEAI- 272 (842)
Q Consensus 200 dpdg~~LaSGs~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~d------G~L~SgS~DgtIrvWd~~t~- 272 (842)
+.+|.+++|+|.||+|.|-.+.++ ++..++. -..++.+|+++|| +++++|+.-| +-+....=.
T Consensus 80 ~~~Gey~asCS~DGkv~I~sl~~~--------~~~~~~d-f~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlg 149 (846)
T KOG2066|consen 80 ILEGEYVASCSDDGKVVIGSLFTD--------DEITQYD-FKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLG 149 (846)
T ss_pred ccCCceEEEecCCCcEEEeeccCC--------ccceeEe-cCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhc
Confidence 568999999999999999988876 3443322 1468999999998 3488998877 655543110
Q ss_pred -cceeecCCCceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcCCCCEEEEeCCCcEEEEEccCCcEEEEeec
Q 003171 273 -EKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGFLSFALWDARTRELLKVFNI 350 (842)
Q Consensus 273 -~~~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s~~tI~lWD~~tg~~l~~l~~ 350 (842)
.....++.. .+.+.++.- -|..++=++|.+|+++|..+++.+..+..
T Consensus 150 nk~~v~l~~~-----------------------------eG~I~~i~W--~g~lIAWand~Gv~vyd~~~~~~l~~i~~ 197 (846)
T KOG2066|consen 150 NKDSVVLSEG-----------------------------EGPIHSIKW--RGNLIAWANDDGVKVYDTPTRQRLTNIPP 197 (846)
T ss_pred CccceeeecC-----------------------------ccceEEEEe--cCcEEEEecCCCcEEEeccccceeeccCC
Confidence 111101000 112223222 23444445677899999999887765543
|
|
| >KOG2338 consensus Transcriptional effector CCR4-related protein [Transcription] | Back alignment and domain information |
|---|
Probab=94.91 E-value=0.059 Score=61.03 Aligned_cols=74 Identities=14% Similarity=0.096 Sum_probs=49.3
Q ss_pred EEEEEeccccCccCc--eeeceeecccCcccCCCCeeEEEEEEeCe---EEEEEeecCcCCcchHHHHHHHHHHHHHhc
Q 003171 646 IAVWVRKNLKDYVGD--VDVAAVPCGFGRAIGNKGAVGLRVRVYDR---IMCFVNCHFAAHLEAVNRRNADFDHVYRTM 719 (842)
Q Consensus 646 l~vf~r~~~~~~i~~--v~~~~v~~G~~~~~gnKG~v~i~~~i~~~---~~~Fv~~HLaa~~~~~~~Rn~~~~~I~~~l 719 (842)
++++-+...-..+-+ |...-...++.+.--=++.|.++|++-+. .++..|.||-=|......|.++...|+..+
T Consensus 204 ~ai~w~~~~F~lv~~~~l~y~~~~~~l~n~~NV~lvv~l~f~~~~~~sq~ilVanTHLl~np~~~~vrL~Q~~iiL~~~ 282 (495)
T KOG2338|consen 204 VAILWHSAKFKLVNHSELNYFDSGSALANRDNVGLVVSLEFRLVDESSQGILVANTHLLFNPSRSDVRLAQVYIILAEL 282 (495)
T ss_pred EEEEEecccceecccchhhcccccchhhcccceeEEEEEEecccCcccCceEEEeeeeeecCcccchhhHHHHHHHHHH
Confidence 445555554333333 33333334444321226677788877665 899999999999888888999999999886
|
|
| >KOG3621 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.70 E-value=9.4 Score=45.35 Aligned_cols=115 Identities=20% Similarity=0.226 Sum_probs=74.4
Q ss_pred eEEEEecCCEEEEec-CCCEEEEeCCCCccccccccccccCCCCCCCCCCeeeeeecCCCeEEEEEcCCCCEEEEEeCCC
Q 003171 135 LRTIVCTEEQLWAGG-ENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGHRDG 213 (842)
Q Consensus 135 ~~~l~~~~~~l~~~~-D~~vrvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~V~~la~dpdg~~LaSGs~DG 213 (842)
++++..+++-+..|+ -|.|.+++-..+..... + ..+. .+.+..+.++++..++|.|+..|
T Consensus 38 lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~----------------~--~~~~-~~~~~~~~vs~~e~lvAagt~~g 98 (726)
T KOG3621|consen 38 LTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKL----------------K--NEGA-TGITCVRSVSSVEYLVAAGTASG 98 (726)
T ss_pred EEEeecCCceEEEecccceEEEEecCchhhhcc----------------c--ccCc-cceEEEEEecchhHhhhhhcCCc
Confidence 334444455565554 57888888654322110 1 1111 44556667788889999999999
Q ss_pred cEEEEECCCCccCCCCCcceeEEe-cccCCcEEEEEEecCCC-EEEeeCCCcEEEEeCCC
Q 003171 214 RIMCWKMNARLLDSDDGFGEVLSW-QAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEA 271 (842)
Q Consensus 214 tIrlWdl~~g~~~~~~~~~~~~~l-~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~~t 271 (842)
.|-+.-+..+.. ........+ +.|...|++++||+||. +++|-.-|+|-+-.+++
T Consensus 99 ~V~v~ql~~~~p---~~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s 155 (726)
T KOG3621|consen 99 RVSVFQLNKELP---RDLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDS 155 (726)
T ss_pred eEEeehhhccCC---CcceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEech
Confidence 998777665421 111111111 34889999999999997 89999999998888766
|
|
| >PRK15251 cytolethal distending toxin subunit CdtB; Provisional | Back alignment and domain information |
|---|
Probab=94.65 E-value=0.38 Score=51.38 Aligned_cols=39 Identities=18% Similarity=0.186 Sum_probs=27.8
Q ss_pred CCCCeeEEEEEEeCeEEEEEeecCcCCcchHHHHHHHHHHHHHhc
Q 003171 675 GNKGAVGLRVRVYDRIMCFVNCHFAAHLEAVNRRNADFDHVYRTM 719 (842)
Q Consensus 675 gnKG~v~i~~~i~~~~~~Fv~~HLaa~~~~~~~Rn~~~~~I~~~l 719 (842)
..+..+++++. .+.|.+.||.+..+ ..|.+..+.|..-+
T Consensus 140 ~~Rpilgi~i~----~~~ffstH~~a~~~--~da~aiV~~I~~~f 178 (271)
T PRK15251 140 ASRPIIGIRIG----NDVFFSIHALANGG--TDAGAIVRAVHNFF 178 (271)
T ss_pred cccceEEEEec----CeEEEEeeecCCCC--ccHHHHHHHHHHHH
Confidence 36778888773 37999999999832 23777777776653
|
|
| >PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function | Back alignment and domain information |
|---|
Probab=94.62 E-value=3.7 Score=44.71 Aligned_cols=55 Identities=13% Similarity=0.150 Sum_probs=40.0
Q ss_pred EEEcCCCCEEEEEeC-----CCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCCC-EEEe
Q 003171 197 MVGDEASGVVWSGHR-----DGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSG 258 (842)
Q Consensus 197 la~dpdg~~LaSGs~-----DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~Sg 258 (842)
-+||+||++|++-=. .|.|-|||...+ ++.+-.|..|.=.=..|.+.|||+ |+.+
T Consensus 56 g~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~-------~~ri~E~~s~GIGPHel~l~pDG~tLvVA 116 (305)
T PF07433_consen 56 GVFSPDGRLLYTTENDYETGRGVIGVYDAARG-------YRRIGEFPSHGIGPHELLLMPDGETLVVA 116 (305)
T ss_pred EEEcCCCCEEEEeccccCCCcEEEEEEECcCC-------cEEEeEecCCCcChhhEEEcCCCCEEEEE
Confidence 368999999999644 468999999854 256667776643335678999995 6544
|
|
| >COG3386 Gluconolactonase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=94.61 E-value=5.9 Score=43.53 Aligned_cols=56 Identities=14% Similarity=0.367 Sum_probs=40.8
Q ss_pred eEEEEECCCCcEEEEeCC-C-eEEEEcCCCCeeeeeecCCccEEEEEecC---CEEEEEec
Q 003171 422 TEALTTSIDGMIWTGGAN-G-LLLQWDPNGNRLQDFQYLPFAVQCLCTFG---SQIWVGYM 477 (842)
Q Consensus 422 v~al~~s~dg~l~Sgs~D-g-tIrlWD~~g~~l~~l~~H~~~V~sls~dG---~~LasGs~ 477 (842)
.-.++...+|.+|++... | .|.+|+.+|+.++.+......+.++++-| +.|++.+.
T Consensus 215 PDG~~vDadG~lw~~a~~~g~~v~~~~pdG~l~~~i~lP~~~~t~~~FgG~~~~~L~iTs~ 275 (307)
T COG3386 215 PDGMAVDADGNLWVAAVWGGGRVVRFNPDGKLLGEIKLPVKRPTNPAFGGPDLNTLYITSA 275 (307)
T ss_pred CCceEEeCCCCEEEecccCCceEEEECCCCcEEEEEECCCCCCccceEeCCCcCEEEEEec
Confidence 334667788899954444 3 79999999999998887767778877654 66666553
|
|
| >PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [] | Back alignment and domain information |
|---|
Probab=94.38 E-value=14 Score=47.01 Aligned_cols=68 Identities=10% Similarity=0.050 Sum_probs=49.8
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEE----ECCCCccCCCCCcceeEEeccc-CCcEEEEEEecCCC-EEEeeCCCcE
Q 003171 191 VSSVMCMVGDEASGVVWSGHRDGRIMCW----KMNARLLDSDDGFGEVLSWQAH-RGPVLSLCISSYGD-LWSGSEGGGI 264 (842)
Q Consensus 191 ~~~V~~la~dpdg~~LaSGs~DGtIrlW----dl~~g~~~~~~~~~~~~~l~gH-~~~V~slafs~dG~-L~SgS~DgtI 264 (842)
.+.|.++.+-++...|..+..+|-|.+. +..+. .....|- ...|.+++||||++ |+-...+++|
T Consensus 75 ~~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~----------~~E~VG~vd~GI~a~~WSPD~Ella~vT~~~~l 144 (928)
T PF04762_consen 75 NDKIVSFQYLADSESLCIALASGDIILVREDPDPDED----------EIEIVGSVDSGILAASWSPDEELLALVTGEGNL 144 (928)
T ss_pred CCcEEEEEeccCCCcEEEEECCceEEEEEccCCCCCc----------eeEEEEEEcCcEEEEEECCCcCEEEEEeCCCEE
Confidence 4578899998899999999999999888 44432 1122232 56899999999998 4555556777
Q ss_pred EEEe
Q 003171 265 KIWP 268 (842)
Q Consensus 265 rvWd 268 (842)
-+-+
T Consensus 145 ~~mt 148 (928)
T PF04762_consen 145 LLMT 148 (928)
T ss_pred EEEe
Confidence 6654
|
|
| >KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=94.06 E-value=9.3 Score=40.31 Aligned_cols=111 Identities=19% Similarity=0.267 Sum_probs=59.4
Q ss_pred CCccccCceeEEEEe-cCCEEEEec-CCCEEEEeCCCCccccccccccccCCCCCCCCCCeeeeeecCCCeEE-EEEcCC
Q 003171 126 LRETQIGCFLRTIVC-TEEQLWAGG-ENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMC-MVGDEA 202 (842)
Q Consensus 126 ~~~~~~~~~~~~l~~-~~~~l~~~~-D~~vrvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~V~~-la~dpd 202 (842)
.||+--+..+..-+. -++.+.+|- .+.+++-+..++..... |.- -..|.| ...|++
T Consensus 46 ~We~ilg~RiE~sa~vvgdfVV~GCy~g~lYfl~~~tGs~~w~-----------------f~~----~~~vk~~a~~d~~ 104 (354)
T KOG4649|consen 46 IWEAILGVRIECSAIVVGDFVVLGCYSGGLYFLCVKTGSQIWN-----------------FVI----LETVKVRAQCDFD 104 (354)
T ss_pred EeehhhCceeeeeeEEECCEEEEEEccCcEEEEEecchhheee-----------------eee----hhhhccceEEcCC
Confidence 455444444432222 255666653 66777777766533221 110 112222 346789
Q ss_pred CCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEec-CCCEEEeeCCCcEE
Q 003171 203 SGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISS-YGDLWSGSEGGGIK 265 (842)
Q Consensus 203 g~~LaSGs~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~-dG~L~SgS~DgtIr 265 (842)
+++||.|+.|+++..-|..+. .++.+.+--.+.-.+=++.| ++.|+.++..|.|-
T Consensus 105 ~glIycgshd~~~yalD~~~~--------~cVykskcgG~~f~sP~i~~g~~sly~a~t~G~vl 160 (354)
T KOG4649|consen 105 GGLIYCGSHDGNFYALDPKTY--------GCVYKSKCGGGTFVSPVIAPGDGSLYAAITAGAVL 160 (354)
T ss_pred CceEEEecCCCcEEEeccccc--------ceEEecccCCceeccceecCCCceEEEEeccceEE
Confidence 999999999999998887764 34443332111112223444 56676666555443
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.86 E-value=3.6 Score=48.59 Aligned_cols=108 Identities=18% Similarity=0.248 Sum_probs=66.7
Q ss_pred ecCCCEEEEeCCCCccccccccccccCCCCCCCCCC--eeeeeec-CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCc
Q 003171 148 GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAP--FKESVKG-VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARL 224 (842)
Q Consensus 148 ~~D~~vrvWdl~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~g-~~~V~~la~dpdg~~LaSGs~DGtIrlWdl~~g~ 224 (842)
|.||-++|--+.+...-. ..+|-..... .-+.+.| ..+|.-+.+..+.+.|-|...+|.|.+|-+-.|.
T Consensus 33 G~dGlLKVlKl~t~t~d~--------~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~GlIiVWmlykgs 104 (1189)
T KOG2041|consen 33 GADGLLKVLKLGTDTTDL--------NKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTSGLIIVWMLYKGS 104 (1189)
T ss_pred cccceeEEEEccccCCcc--------cccccccccccchhhhhccCcceEEEEEeccccccccccCCCceEEEEeeeccc
Confidence 789999999886543221 1222111111 1111223 7889999999999999999999999999887652
Q ss_pred cCCCCCcceeEEecccCCcEEEEEEecCCC-EEEeeCCCcEEEEeC
Q 003171 225 LDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPW 269 (842)
Q Consensus 225 ~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~ 269 (842)
=+++ ..-.-....|.+|+|..||. +...-+||.|-|=.+
T Consensus 105 -----W~EE-MiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsv 144 (1189)
T KOG2041|consen 105 -----WCEE-MINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSV 144 (1189)
T ss_pred -----HHHH-HhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEee
Confidence 0011 11112245788999988886 555556665544333
|
|
| >KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=93.76 E-value=0.49 Score=52.83 Aligned_cols=75 Identities=24% Similarity=0.319 Sum_probs=57.2
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCCCE-EEeeC-CCcEEEEe
Q 003171 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGDL-WSGSE-GGGIKIWP 268 (842)
Q Consensus 191 ~~~V~~la~dpdg~~LaSGs~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~L-~SgS~-DgtIrvWd 268 (842)
...|+-+... ..+.+.+||.||.+|-|.-..- ...+-+..+..|-+.|.+++.+-+|.| .|.+. |..+|++|
T Consensus 9 rd~i~hv~~t-ka~fiiqASlDGh~KFWkKs~i-----sGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfD 82 (558)
T KOG0882|consen 9 RDVITHVFPT-KAKFIIQASLDGHKKFWKKSRI-----SGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFD 82 (558)
T ss_pred cceeeeEeee-hhheEEeeecchhhhhcCCCCc-----cceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEE
Confidence 4455555544 4589999999999999975441 111345567899999999999999985 68787 99999999
Q ss_pred CCC
Q 003171 269 WEA 271 (842)
Q Consensus 269 ~~t 271 (842)
+++
T Consensus 83 vEn 85 (558)
T KOG0882|consen 83 VEN 85 (558)
T ss_pred eec
Confidence 865
|
|
| >KOG3621 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.60 E-value=13 Score=44.22 Aligned_cols=67 Identities=15% Similarity=0.182 Sum_probs=49.2
Q ss_pred EEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCCCE-EEeeCCCcEEEEeCCC
Q 003171 198 VGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGDL-WSGSEGGGIKIWPWEA 271 (842)
Q Consensus 198 a~dpdg~~LaSGs~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~L-~SgS~DgtIrvWd~~t 271 (842)
++|..+++|+-|+.-|.+.+++-.++. ...+...|-.+.+..+.+|++..+ +.|+..|.|-|..+..
T Consensus 40 c~dst~~~l~~GsS~G~lyl~~R~~~~-------~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~ 107 (726)
T KOG3621|consen 40 CVDATEEYLAMGSSAGSVYLYNRHTGE-------MRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNK 107 (726)
T ss_pred EeecCCceEEEecccceEEEEecCchh-------hhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhc
Confidence 345567999999999999999987763 333444444566777788888875 5788888888877644
|
|
| >PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats | Back alignment and domain information |
|---|
Probab=93.43 E-value=0.25 Score=57.01 Aligned_cols=68 Identities=16% Similarity=0.199 Sum_probs=47.8
Q ss_pred CCceEEEEECCCCc-EEEEeCCCeEEEEcCCCCeeeeeecCCccEEEEE--ecCCEEEEEecCcEEEEEeCC
Q 003171 419 NRRTEALTTSIDGM-IWTGGANGLLLQWDPNGNRLQDFQYLPFAVQCLC--TFGSQIWVGYMNGIVQVLDLE 487 (842)
Q Consensus 419 ~~~v~al~~s~dg~-l~Sgs~DgtIrlWD~~g~~l~~l~~H~~~V~sls--~dG~~LasGs~DgtIrlWD~~ 487 (842)
...|.+.+.+|+.. ++.|+.||+|++||.+.+..+ +..+.-..+.++ ++|..+++|+..|.|++||..
T Consensus 259 ~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~-~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~A 329 (545)
T PF11768_consen 259 PSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTL-LAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMA 329 (545)
T ss_pred CCcceEEecCcccceEEEEecCCeEEEEEcCCCeee-eeeecccceEEEEcCCCcEEEEEcCCceEEEEEee
Confidence 34566778888765 889999999999998433222 222233334444 578899999999999999976
|
|
| >COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.43 E-value=6.2 Score=45.11 Aligned_cols=49 Identities=6% Similarity=0.015 Sum_probs=36.1
Q ss_pred cEEEEEeCCCcccccccccccCEEEEEe--CCCE--EEEEcCCCCeeeccccC
Q 003171 479 GIVQVLDLEGNLLGGWVAHSSPVIKMAV--GAGY--IFTLANHGGIRGWNVTS 527 (842)
Q Consensus 479 gtIrlWD~~g~~i~~l~gH~~~V~sla~--dg~~--l~S~S~DgtIrvWd~~~ 527 (842)
..++|++++++-+.+...-.++|....+ +++. +++|-.+.++.+.|++.
T Consensus 255 snLyl~~~~e~~i~V~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~ 307 (561)
T COG5354 255 SNLYLLRITERSIPVEKDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRG 307 (561)
T ss_pred ceEEEEeecccccceeccccccceeeeecccCCceeEEecccccceeeccccc
Confidence 5789999887666666566889999886 5554 45666788888888653
|
|
| >KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=93.22 E-value=0.28 Score=54.00 Aligned_cols=88 Identities=20% Similarity=0.176 Sum_probs=67.6
Q ss_pred cCCCceEEEEECCCCc--EEEEeCCCeEEEEcC-CCCeeeeeecCCccEEEEEec---CCEEEEEecCcEEEEEeCC--C
Q 003171 417 DDNRRTEALTTSIDGM--IWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQCLCTF---GSQIWVGYMNGIVQVLDLE--G 488 (842)
Q Consensus 417 ~~~~~v~al~~s~dg~--l~Sgs~DgtIrlWD~-~g~~l~~l~~H~~~V~sls~d---G~~LasGs~DgtIrlWD~~--g 488 (842)
++...|..++|||... +..++.+.+|++.|+ +..++..+..| ..+++.+.| -.+|+.|-..|.|.++|+. .
T Consensus 191 ~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~IYaGl~nG~VlvyD~R~~~ 269 (463)
T KOG1645|consen 191 GEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVIYAGLQNGMVLVYDMRQPE 269 (463)
T ss_pred ccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCcceeEEeccCceEEEEEccCCC
Confidence 4556677899998655 778999999999999 56677888887 788888774 3499999999999999986 2
Q ss_pred cccccccc--cccCEEEEE
Q 003171 489 NLLGGWVA--HSSPVIKMA 505 (842)
Q Consensus 489 ~~i~~l~g--H~~~V~sla 505 (842)
..+..+.+ -..+|..|+
T Consensus 270 ~~~~e~~a~~t~~pv~~i~ 288 (463)
T KOG1645|consen 270 GPLMELVANVTINPVHKIA 288 (463)
T ss_pred chHhhhhhhhccCcceeec
Confidence 34555554 345677766
|
|
| >COG3386 Gluconolactonase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=93.03 E-value=9.2 Score=42.06 Aligned_cols=97 Identities=21% Similarity=0.331 Sum_probs=58.3
Q ss_pred CCceEEEEECCCCc-EEEEeC-CCeEEEEcCC---CC---e--eeeeecCCccEEEEEecCC-EEEEEec-Cc-EEEEEe
Q 003171 419 NRRTEALTTSIDGM-IWTGGA-NGLLLQWDPN---GN---R--LQDFQYLPFAVQCLCTFGS-QIWVGYM-NG-IVQVLD 485 (842)
Q Consensus 419 ~~~v~al~~s~dg~-l~Sgs~-DgtIrlWD~~---g~---~--l~~l~~H~~~V~sls~dG~-~LasGs~-Dg-tIrlWD 485 (842)
......|+||||++ ++.+-+ .+.|..++.. +. . ...+..+.+.--.++.|.+ .||++.. +| .|.+|+
T Consensus 162 ~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~ 241 (307)
T COG3386 162 LTIPNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFN 241 (307)
T ss_pred EEecCceEECCCCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEEC
Confidence 34445799999996 665543 3667666553 21 1 1111112222233444433 5664443 33 999999
Q ss_pred CCCcccccccccccCEEEEEeCC---CEEEEEc
Q 003171 486 LEGNLLGGWVAHSSPVIKMAVGA---GYIFTLA 515 (842)
Q Consensus 486 ~~g~~i~~l~gH~~~V~sla~dg---~~l~S~S 515 (842)
.+|+++.....+...+.++++.| +.|+..|
T Consensus 242 pdG~l~~~i~lP~~~~t~~~FgG~~~~~L~iTs 274 (307)
T COG3386 242 PDGKLLGEIKLPVKRPTNPAFGGPDLNTLYITS 274 (307)
T ss_pred CCCcEEEEEECCCCCCccceEeCCCcCEEEEEe
Confidence 99999988888877888888644 6555443
|
|
| >KOG2444 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.62 E-value=0.41 Score=49.30 Aligned_cols=107 Identities=19% Similarity=0.195 Sum_probs=65.9
Q ss_pred EEecCCEEEEe-cCCCEEEEeCCCCccccccccccccCCCCCCCCCCeeeeeecCCCeEEEEEcC-CCCEEEEEeCCCcE
Q 003171 138 IVCTEEQLWAG-GENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDE-ASGVVWSGHRDGRI 215 (842)
Q Consensus 138 l~~~~~~l~~~-~D~~vrvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~V~~la~dp-dg~~LaSGs~DGtI 215 (842)
+...+..++.| +|+.|.+|+....-. . .+..++ +..+|.|+...- ++.+.++|..||.|
T Consensus 66 v~~~~~~~~vG~~dg~v~~~n~n~~g~--~------------~d~~~s-----~~e~i~~~Ip~~~~~~~~c~~~~dg~i 126 (238)
T KOG2444|consen 66 VVTASAKLMVGTSDGAVYVFNWNLEGA--H------------SDRVCS-----GEESIDLGIPNGRDSSLGCVGAQDGRI 126 (238)
T ss_pred ecccCceEEeecccceEEEecCCccch--H------------HHhhhc-----ccccceeccccccccceeEEeccCCce
Confidence 33445567764 589999988752110 0 111111 134566655432 45689999999999
Q ss_pred EEEECCCCccCCCCCcceeEEecccC-CcEEEEEEecCCC-EEEe--eCCCcEEEEeCCC
Q 003171 216 MCWKMNARLLDSDDGFGEVLSWQAHR-GPVLSLCISSYGD-LWSG--SEGGGIKIWPWEA 271 (842)
Q Consensus 216 rlWdl~~g~~~~~~~~~~~~~l~gH~-~~V~slafs~dG~-L~Sg--S~DgtIrvWd~~t 271 (842)
|.|++.-. +..-.--.|+ .++..+..+..++ |.++ |.|.++|.|+++.
T Consensus 127 r~~n~~p~--------k~~g~~g~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~ 178 (238)
T KOG2444|consen 127 RACNIKPN--------KVLGYVGQHNFESGEELIVVGSDEFLKIADTSHDRVLKKWNVEK 178 (238)
T ss_pred eeeccccC--------ceeeeeccccCCCcceeEEecCCceEEeeccccchhhhhcchhh
Confidence 99998775 2222233455 5666665555555 5666 8889999998854
|
|
| >PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region | Back alignment and domain information |
|---|
Probab=92.59 E-value=0.78 Score=42.20 Aligned_cols=55 Identities=20% Similarity=0.222 Sum_probs=43.4
Q ss_pred CEEEEEeCCCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCCCEEEeeCCCcEEEEeC
Q 003171 204 GVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGDLWSGSEGGGIKIWPW 269 (842)
Q Consensus 204 ~~LaSGs~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~L~SgS~DgtIrvWd~ 269 (842)
.-|..||.|..||+|+-+. .+.... -++.|++|+-...++++-|-..|||.|++-
T Consensus 16 ~eLlvGs~D~~IRvf~~~e----------~~~Ei~-e~~~v~~L~~~~~~~F~Y~l~NGTVGvY~~ 70 (111)
T PF14783_consen 16 NELLVGSDDFEIRVFKGDE----------IVAEIT-ETDKVTSLCSLGGGRFAYALANGTVGVYDR 70 (111)
T ss_pred ceEEEecCCcEEEEEeCCc----------EEEEEe-cccceEEEEEcCCCEEEEEecCCEEEEEeC
Confidence 6789999999999998654 223322 256889998888888999999999999875
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=92.38 E-value=26 Score=40.63 Aligned_cols=61 Identities=20% Similarity=0.102 Sum_probs=38.1
Q ss_pred CeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCCCEEEeeCCCcEEEE
Q 003171 193 SVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGDLWSGSEGGGIKIW 267 (842)
Q Consensus 193 ~V~~la~dpdg~~LaSGs~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~L~SgS~DgtIrvW 267 (842)
....+..+|+|+.++. ..||...++..... +... .+.-...+|.+.++.+.-...++|++.
T Consensus 34 ~p~~ls~npngr~v~V-~g~geY~iyt~~~~--------r~k~-----~G~g~~~vw~~~n~yAv~~~~~~I~I~ 94 (443)
T PF04053_consen 34 YPQSLSHNPNGRFVLV-CGDGEYEIYTALAW--------RNKA-----FGSGLSFVWSSRNRYAVLESSSTIKIY 94 (443)
T ss_dssp --SEEEE-TTSSEEEE-EETTEEEEEETTTT--------EEEE-----EEE-SEEEE-TSSEEEEE-TTS-EEEE
T ss_pred CCeeEEECCCCCEEEE-EcCCEEEEEEccCC--------cccc-----cCceeEEEEecCccEEEEECCCeEEEE
Confidence 4678999999999988 66777777764332 2222 234456788888888877778899995
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase | Back alignment and domain information |
|---|
Probab=92.03 E-value=19 Score=38.34 Aligned_cols=61 Identities=20% Similarity=0.325 Sum_probs=41.3
Q ss_pred cCCEEEEecCCCEEEEeCCCCccccccccccccCCCCCCCCCCeeeeeecCCCeEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 003171 141 TEEQLWAGGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGHRDGRIMCWKM 220 (842)
Q Consensus 141 ~~~~l~~~~D~~vrvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~V~~la~dpdg~~LaSGs~DGtIrlWdl 220 (842)
.++.|++|++.+|.++++...... +...+ ..+|.-+.+-|+-+.|+.= .|+.+.++++
T Consensus 6 ~~~~L~vGt~~Gl~~~~~~~~~~~--------------------~~i~~-~~~I~ql~vl~~~~~llvL-sd~~l~~~~L 63 (275)
T PF00780_consen 6 WGDRLLVGTEDGLYVYDLSDPSKP--------------------TRILK-LSSITQLSVLPELNLLLVL-SDGQLYVYDL 63 (275)
T ss_pred CCCEEEEEECCCEEEEEecCCccc--------------------eeEee-cceEEEEEEecccCEEEEE-cCCccEEEEc
Confidence 466899999999999998321111 11122 4458888888876666554 3599999998
Q ss_pred CCC
Q 003171 221 NAR 223 (842)
Q Consensus 221 ~~g 223 (842)
..-
T Consensus 64 ~~l 66 (275)
T PF00780_consen 64 DSL 66 (275)
T ss_pred hhh
Confidence 763
|
These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity |
| >KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=91.83 E-value=0.11 Score=61.72 Aligned_cols=73 Identities=18% Similarity=0.207 Sum_probs=60.7
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCCC--EEEeeCCC-cEEEE
Q 003171 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD--LWSGSEGG-GIKIW 267 (842)
Q Consensus 191 ~~~V~~la~dpdg~~LaSGs~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~--L~SgS~Dg-tIrvW 267 (842)
+..-+|++|+.+.+.|+.|+..|.|+++++.+| ...-+..+|..+|+-|--+.||. |-|+++.. ..-+|
T Consensus 1101 ~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG--------~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~PlsaLW 1172 (1516)
T KOG1832|consen 1101 TALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSG--------SMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSALW 1172 (1516)
T ss_pred ccceeeEEeecCCceEEeeeccceEEEEEccCc--------cccccccccccccccccccCCcceeeeeccccCchHHHh
Confidence 567899999999999999999999999999998 45566789999999999999997 34444444 67899
Q ss_pred eCCC
Q 003171 268 PWEA 271 (842)
Q Consensus 268 d~~t 271 (842)
++..
T Consensus 1173 ~~~s 1176 (1516)
T KOG1832|consen 1173 DASS 1176 (1516)
T ss_pred cccc
Confidence 9854
|
|
| >KOG3873 consensus Sphingomyelinase family protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=91.71 E-value=0.36 Score=52.62 Aligned_cols=122 Identities=18% Similarity=0.154 Sum_probs=75.6
Q ss_pred HHhhhccCCCceEE-EeeeeceeeEEEEEEeccccCccCceee---ceeecccCcccCCCCeeEEEEEEeCeEEEEEeec
Q 003171 622 MIGKILDDGSTFER-VGSRQLAGLLIAVWVRKNLKDYVGDVDV---AAVPCGFGRAIGNKGAVGLRVRVYDRIMCFVNCH 697 (842)
Q Consensus 622 ~l~~~l~~~~~y~~-v~s~~l~g~~l~vf~r~~~~~~i~~v~~---~~v~~G~~~~~gnKG~v~i~~~i~~~~~~Fv~~H 697 (842)
.|++.+.....|.. ..|--| |-.|+||.|-.+..-.-+.-. ..-..=-|-..|-||---.++.+.+..+.+.|.|
T Consensus 58 ~L~~~~ss~yPysh~FHSGim-GaGL~vfSK~PI~~t~~~~y~lNG~p~~i~rGDWf~GK~Vgl~~l~~~g~~v~~yntH 136 (422)
T KOG3873|consen 58 YLQSGCSSVYPYSHYFHSGIM-GAGLCVFSKHPILETLFHRYSLNGYPHAIHRGDWFGGKGVGLTVLLVGGRMVNLYNTH 136 (422)
T ss_pred HHHHhccccCchHHhhhcccc-cCceEEeecCchhhhhhhccccCCccceeeeccccccceeEEEEEeeCCEEeeeeehh
Confidence 45554433344543 445555 888999999887533222111 0000111234578998888999999999999999
Q ss_pred CcCCc-----chHHHHHHHHHHHHHhcCcCCCCCccchhccCCCceeeecccCCCCCCCccCCCCCcCcccEEEEeccce
Q 003171 698 FAAHL-----EAVNRRNADFDHVYRTMTFCRPSNLCSAAAAGASSVVQMLRSTNPLSGLTVEGVPELSEADMVIFLGDFN 772 (842)
Q Consensus 698 Laa~~-----~~~~~Rn~~~~~I~~~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vf~~GDlN 772 (842)
|-|-- .-+-.|..+-.++-+-+.-- -...|.|+..||||
T Consensus 137 LHAeY~rq~D~YL~HR~~QAwdlaqfi~~t------------------------------------~q~~~vVI~~GDLN 180 (422)
T KOG3873|consen 137 LHAEYDRQNDEYLCHRVAQAWDLAQFIRAT------------------------------------RQNADVVILAGDLN 180 (422)
T ss_pred ccccccccCchhhhHHHHHHHHHHHHHHHH------------------------------------hcCCcEEEEecCCC
Confidence 97752 23455666665654433111 12479999999999
Q ss_pred eeecCCCh
Q 003171 773 YRLDGITY 780 (842)
Q Consensus 773 yRi~~~~~ 780 (842)
-+=..+++
T Consensus 181 ~~P~dl~~ 188 (422)
T KOG3873|consen 181 MQPQDLGH 188 (422)
T ss_pred CCccccce
Confidence 98765543
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=91.68 E-value=3.3 Score=49.96 Aligned_cols=127 Identities=16% Similarity=0.214 Sum_probs=75.2
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCCCE-EEeeCCCcEEEEeC
Q 003171 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGDL-WSGSEGGGIKIWPW 269 (842)
Q Consensus 191 ~~~V~~la~dpdg~~LaSGs~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~L-~SgS~DgtIrvWd~ 269 (842)
..|+.+++++.+-+.||.|-.||.|....-+--. +...+......| ..+||+++|-.+|+. +-...-..|.++.+
T Consensus 125 ~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~R---Drgsr~~~~~~~-~~pITgL~~~~d~~s~lFv~Tt~~V~~y~l 200 (933)
T KOG2114|consen 125 PSPASSLAVSEDLKTIVCGFTNGLVICYKGDILR---DRGSRQDYSHRG-KEPITGLALRSDGKSVLFVATTEQVMLYSL 200 (933)
T ss_pred CCcceEEEEEccccEEEEEecCcEEEEEcCcchh---ccccceeeeccC-CCCceeeEEecCCceeEEEEecceeEEEEe
Confidence 5689999999999999999999999877532110 000011111111 579999999999872 33333456888887
Q ss_pred CCccceeecCCCceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcCCCCEEEEeCCCcEEEEEccCCcEEEEee
Q 003171 270 EAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGFLSFALWDARTRELLKVFN 349 (842)
Q Consensus 270 ~t~~~~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s~~tI~lWD~~tg~~l~~l~ 349 (842)
.+....+.. +.++ -....|..+++....+.++++..+.++|.......-+|.
T Consensus 201 ~gr~p~~~~------------------ld~~----------G~~lnCss~~~~t~qfIca~~e~l~fY~sd~~~~cfaf~ 252 (933)
T KOG2114|consen 201 SGRTPSLKV------------------LDNN----------GISLNCSSFSDGTYQFICAGSEFLYFYDSDGRGPCFAFE 252 (933)
T ss_pred cCCCcceee------------------eccC----------CccceeeecCCCCccEEEecCceEEEEcCCCcceeeeec
Confidence 642211110 0001 112445555555555666666777888876555544554
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=91.57 E-value=40 Score=42.77 Aligned_cols=105 Identities=10% Similarity=0.028 Sum_probs=63.3
Q ss_pred EEEECCCCcEEEE-----eCC-CeEEEEcCCCCeeeeee--cCCccEEEEEecCCEEEEEe---cCcEEEEEeCCCc---
Q 003171 424 ALTTSIDGMIWTG-----GAN-GLLLQWDPNGNRLQDFQ--YLPFAVQCLCTFGSQIWVGY---MNGIVQVLDLEGN--- 489 (842)
Q Consensus 424 al~~s~dg~l~Sg-----s~D-gtIrlWD~~g~~l~~l~--~H~~~V~sls~dG~~LasGs---~DgtIrlWD~~g~--- 489 (842)
++.+-.||++++. -.+ ++||+||.+|.+-.+-. .......+-.|.|..+++-. +|+.|.++..+|-
T Consensus 200 ~IsWRgDg~~fAVs~~~~~~~~RkirV~drEg~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~hg 279 (1265)
T KOG1920|consen 200 SISWRGDGEYFAVSFVESETGTRKIRVYDREGALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLRHG 279 (1265)
T ss_pred eEEEccCCcEEEEEEEeccCCceeEEEecccchhhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEecCCcccc
Confidence 3555567753322 224 78999999864321111 11222334457888888643 4678999997653
Q ss_pred -ccccccccccCEEEEEe--CCCEEEE---EcCCCCeeeccccCC
Q 003171 490 -LLGGWVAHSSPVIKMAV--GAGYIFT---LANHGGIRGWNVTSP 528 (842)
Q Consensus 490 -~i~~l~gH~~~V~sla~--dg~~l~S---~S~DgtIrvWd~~~~ 528 (842)
....+..-...|..|++ +++.|+. ......|++|-+.+|
T Consensus 280 ~f~l~~p~de~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~Ny 324 (1265)
T KOG1920|consen 280 EFVLPFPLDEKEVEELAWNSNSDILAVVTSNLENSLVQLWTTGNY 324 (1265)
T ss_pred ccccCCcccccchheeeecCCCCceeeeecccccceEEEEEecCe
Confidence 44455555556888887 4555553 444445999987765
|
|
| >PTZ00297 pantothenate kinase; Provisional | Back alignment and domain information |
|---|
Probab=91.56 E-value=1.9 Score=56.74 Aligned_cols=69 Identities=13% Similarity=0.077 Sum_probs=41.1
Q ss_pred eEEEEEEeccccCccCceeeceeec-ccCcccCCCCeeEEEEEEe----C-eEEEEEeecCcCCcchHHHHHHHHHHHHH
Q 003171 644 LLIAVWVRKNLKDYVGDVDVAAVPC-GFGRAIGNKGAVGLRVRVY----D-RIMCFVNCHFAAHLEAVNRRNADFDHVYR 717 (842)
Q Consensus 644 ~~l~vf~r~~~~~~i~~v~~~~v~~-G~~~~~gnKG~v~i~~~i~----~-~~~~Fv~~HLaa~~~~~~~Rn~~~~~I~~ 717 (842)
-.++|..|-.+.. .+.-..+. +.+-...+||.+-+.+.+. + ..+.|+|.||.+.... ..|.++.+.+.+
T Consensus 103 ~G~AILSR~PI~~----~~~~~l~~~~~~~~~~~RG~L~a~I~vp~~~g~~~~v~v~~tHL~~~~~~-~~R~~Q~~ql~~ 177 (1452)
T PTZ00297 103 NGLIIASRFPIWQ----RGSYTFRNHERGEQSVRRGCLFAEVEVPLAEGGSQRIVFFNVHLRQEDSL-PSTSSQVQETRR 177 (1452)
T ss_pred CEEEEEECCChhh----ceeeecCcccccccccccceEEEEEEccccCCCCceEEEEEeCCCCCCCc-chHHHHHHHHHH
Confidence 3456777776642 22222221 1222235899999999984 2 5899999999987543 224445555543
|
|
| >PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins | Back alignment and domain information |
|---|
Probab=90.96 E-value=5.3 Score=49.15 Aligned_cols=65 Identities=20% Similarity=0.230 Sum_probs=49.6
Q ss_pred ceEEEEECCCCcEEEEeCCCeEEEEcCCCCeeee-eecCCccEEEEE--ecCCEEEEEecCcEEEEEeC
Q 003171 421 RTEALTTSIDGMIWTGGANGLLLQWDPNGNRLQD-FQYLPFAVQCLC--TFGSQIWVGYMNGIVQVLDL 486 (842)
Q Consensus 421 ~v~al~~s~dg~l~Sgs~DgtIrlWD~~g~~l~~-l~~H~~~V~sls--~dG~~LasGs~DgtIrlWD~ 486 (842)
.-.+++-+.+|.|+.||.+|.|||+|-.|..-++ |.+-..+|..|. .||++|++.+ +..|-|.|+
T Consensus 579 ~Fs~~aTt~~G~iavgs~~G~IRLyd~~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc-~tyLlLi~t 646 (794)
T PF08553_consen 579 NFSCFATTEDGYIAVGSNKGDIRLYDRLGKRAKTALPGLGDPIIGIDVTADGKWILATC-KTYLLLIDT 646 (794)
T ss_pred CceEEEecCCceEEEEeCCCcEEeecccchhhhhcCCCCCCCeeEEEecCCCcEEEEee-cceEEEEEE
Confidence 4567888899999999999999999986654444 335568898774 5899887754 667888885
|
Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ]. |
| >KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=90.81 E-value=0.5 Score=57.92 Aligned_cols=69 Identities=20% Similarity=0.427 Sum_probs=52.4
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEe---cCCC-EEEeeCCCcEEE
Q 003171 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCIS---SYGD-LWSGSEGGGIKI 266 (842)
Q Consensus 191 ~~~V~~la~dpdg~~LaSGs~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs---~dG~-L~SgS~DgtIrv 266 (842)
.++|.|++|+.+|+++..|..+|.|.+||+..+ +..+.+.-|..+++++-+. .++. ++++-..|. +
T Consensus 130 ~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~--------k~l~~i~e~~ap~t~vi~v~~t~~nS~llt~D~~Gs--f 199 (1206)
T KOG2079|consen 130 QGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRA--------KILKVITEHGAPVTGVIFVGRTSQNSKLLTSDTGGS--F 199 (1206)
T ss_pred CCcceeeEecCCCceeccccCCCcEEEEEccCC--------cceeeeeecCCccceEEEEEEeCCCcEEEEccCCCc--e
Confidence 679999999999999999999999999999986 4555566666666666543 2333 667666664 7
Q ss_pred EeC
Q 003171 267 WPW 269 (842)
Q Consensus 267 Wd~ 269 (842)
|.+
T Consensus 200 ~~l 202 (1206)
T KOG2079|consen 200 WKL 202 (1206)
T ss_pred EEE
Confidence 775
|
|
| >KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=90.72 E-value=0.81 Score=53.24 Aligned_cols=73 Identities=16% Similarity=0.208 Sum_probs=58.3
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEecccCCcEE-EEEEecCCC-EEEeeCCCcEEEEeC
Q 003171 192 SSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVL-SLCISSYGD-LWSGSEGGGIKIWPW 269 (842)
Q Consensus 192 ~~V~~la~dpdg~~LaSGs~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~-slafs~dG~-L~SgS~DgtIrvWd~ 269 (842)
..|.-+.++|.-.+||.+..+|.+-+..++- +.+-++.-|...|+ +++|.|||+ |+.|=.||+|++-|+
T Consensus 21 ~~i~~~ewnP~~dLiA~~t~~gelli~R~n~---------qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dv 91 (665)
T KOG4640|consen 21 INIKRIEWNPKMDLIATRTEKGELLIHRLNW---------QRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDV 91 (665)
T ss_pred cceEEEEEcCccchhheeccCCcEEEEEecc---------ceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEc
Confidence 3577889999999999999999877776653 44555554555666 999999999 578999999999999
Q ss_pred CCcc
Q 003171 270 EAIE 273 (842)
Q Consensus 270 ~t~~ 273 (842)
+++.
T Consensus 92 e~~~ 95 (665)
T KOG4640|consen 92 EKGG 95 (665)
T ss_pred cCCC
Confidence 7653
|
|
| >KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=90.17 E-value=0.53 Score=57.70 Aligned_cols=91 Identities=25% Similarity=0.314 Sum_probs=61.2
Q ss_pred EEEEeCCCeEEEEcCCCCeeeeee--cCCccEEEEEe--cCCEEEEEecCcEEEEEeCC-CcccccccccccCEEEEE--
Q 003171 433 IWTGGANGLLLQWDPNGNRLQDFQ--YLPFAVQCLCT--FGSQIWVGYMNGIVQVLDLE-GNLLGGWVAHSSPVIKMA-- 505 (842)
Q Consensus 433 l~Sgs~DgtIrlWD~~g~~l~~l~--~H~~~V~sls~--dG~~LasGs~DgtIrlWD~~-g~~i~~l~gH~~~V~sla-- 505 (842)
++.|+.-|.|-+.|.+|+.-.-.. .-.++|+|+++ +|++++.|-.+|.|.+||.. ++.++.+.-|..++.++.
T Consensus 102 ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t~vi~v 181 (1206)
T KOG2079|consen 102 IVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVTGVIFV 181 (1206)
T ss_pred EEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCccceEEEE
Confidence 667777777888888765221111 12467888865 78899999899999999986 677887777777776654
Q ss_pred --e-CCCEEEEEcCCCCeeeccc
Q 003171 506 --V-GAGYIFTLANHGGIRGWNV 525 (842)
Q Consensus 506 --~-dg~~l~S~S~DgtIrvWd~ 525 (842)
. ++..++++.+-|. +|.+
T Consensus 182 ~~t~~nS~llt~D~~Gs--f~~l 202 (1206)
T KOG2079|consen 182 GRTSQNSKLLTSDTGGS--FWKL 202 (1206)
T ss_pred EEeCCCcEEEEccCCCc--eEEE
Confidence 2 3444666555554 6764
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=90.15 E-value=1.8 Score=51.88 Aligned_cols=68 Identities=21% Similarity=0.284 Sum_probs=58.8
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEe-cccCCcEEEEEEecCCC-EEEeeCCCcEEEEeCC
Q 003171 194 VMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSW-QAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWE 270 (842)
Q Consensus 194 V~~la~dpdg~~LaSGs~DGtIrlWdl~~g~~~~~~~~~~~~~l-~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~~ 270 (842)
+.++.|.|.--.|++|-.-|.+.+|...+ .+.++. .-|..+|..+.||++|. |+|+-.=|.|.+|..+
T Consensus 62 atSLCWHpe~~vLa~gwe~g~~~v~~~~~---------~e~htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 62 ATSLCWHPEEFVLAQGWEMGVSDVQKTNT---------TETHTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYD 131 (1416)
T ss_pred hhhhccChHHHHHhhccccceeEEEecCC---------ceeeeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEee
Confidence 45689999888999999999999999877 344543 56999999999999998 8899999999999886
|
|
| >KOG4532 consensus WD40-like repeat containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=89.70 E-value=14 Score=39.08 Aligned_cols=76 Identities=16% Similarity=0.028 Sum_probs=52.9
Q ss_pred CeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcce-eEEecccCCcEEEEEEecCCC--EEEeeC-CCcEEEEe
Q 003171 193 SVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGE-VLSWQAHRGPVLSLCISSYGD--LWSGSE-GGGIKIWP 268 (842)
Q Consensus 193 ~V~~la~dpdg~~LaSGs~DGtIrlWdl~~g~~~~~~~~~~-~~~l~gH~~~V~slafs~dG~--L~SgS~-DgtIrvWd 268 (842)
.=.|..|+......|++++||++-|||+..-. .+... ..+-..|.++|..+.|++.|. |+-=|+ =+.+.|-|
T Consensus 205 ~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~----tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D 280 (344)
T KOG4532|consen 205 HGFYNSFSENDLQFAVVFQDGTCAIYDVRNMA----TPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVD 280 (344)
T ss_pred CceeeeeccCcceEEEEecCCcEEEEEecccc----cchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEE
Confidence 45678889888999999999999999986531 11111 122235899999999999884 433232 35677777
Q ss_pred CCCc
Q 003171 269 WEAI 272 (842)
Q Consensus 269 ~~t~ 272 (842)
+.+.
T Consensus 281 ~R~~ 284 (344)
T KOG4532|consen 281 TRNY 284 (344)
T ss_pred cccC
Confidence 7664
|
|
| >KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=89.57 E-value=0.25 Score=59.02 Aligned_cols=117 Identities=15% Similarity=0.144 Sum_probs=81.7
Q ss_pred cccCCCceEEEEECCCCc-EEEEeCCCeEEEEcC-CCCeeeeeecCCccEEEEEe--cCCEEEE-EecCc-EEEEEeCC-
Q 003171 415 FGDDNRRTEALTTSIDGM-IWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQCLCT--FGSQIWV-GYMNG-IVQVLDLE- 487 (842)
Q Consensus 415 ~~~~~~~v~al~~s~dg~-l~Sgs~DgtIrlWD~-~g~~l~~l~~H~~~V~sls~--dG~~Las-Gs~Dg-tIrlWD~~- 487 (842)
|..+...-++++|+.+.. |+.|+-.|.|+++++ +|.......+|..+|+-+-| ||..+.+ ++... -..||++.
T Consensus 1097 frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~PlsaLW~~~s 1176 (1516)
T KOG1832|consen 1097 FRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSALWDASS 1176 (1516)
T ss_pred hhccccceeeEEeecCCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCchHHHhcccc
Confidence 344556677899988766 899999999999999 89888889999999999965 7885444 44343 67899986
Q ss_pred -CcccccccccccCEEEEEeCCC---EEE-EEcCCCCeeeccccCCCCCcchhhh
Q 003171 488 -GNLLGGWVAHSSPVIKMAVGAG---YIF-TLANHGGIRGWNVTSPGPLDSILCK 537 (842)
Q Consensus 488 -g~~i~~l~gH~~~V~sla~dg~---~l~-S~S~DgtIrvWd~~~~~~~d~~l~~ 537 (842)
+...+++.+- .++.+... .++ +.+ .-+.++|+++..+++.++..
T Consensus 1177 ~~~~~Hsf~ed----~~vkFsn~~q~r~~gt~~--d~a~~YDvqT~~~l~tylt~ 1225 (1516)
T KOG1832|consen 1177 TGGPRHSFDED----KAVKFSNSLQFRALGTEA--DDALLYDVQTCSPLQTYLTD 1225 (1516)
T ss_pred ccCcccccccc----ceeehhhhHHHHHhcccc--cceEEEecccCcHHHHhcCc
Confidence 5566666542 22333221 122 222 34678999998887775543
|
|
| >PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=89.49 E-value=45 Score=38.28 Aligned_cols=49 Identities=12% Similarity=0.336 Sum_probs=37.9
Q ss_pred cEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCCCEEEeeCCCcEEEEeCCC
Q 003171 214 RIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGDLWSGSEGGGIKIWPWEA 271 (842)
Q Consensus 214 tIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~L~SgS~DgtIrvWd~~t 271 (842)
.|++++..+.. -....|.. +.|-++.|+.+-+|+.-..||+++++|+.+
T Consensus 62 ~I~iys~sG~l-------l~~i~w~~--~~iv~~~wt~~e~LvvV~~dG~v~vy~~~G 110 (410)
T PF04841_consen 62 SIQIYSSSGKL-------LSSIPWDS--GRIVGMGWTDDEELVVVQSDGTVRVYDLFG 110 (410)
T ss_pred EEEEECCCCCE-------eEEEEECC--CCEEEEEECCCCeEEEEEcCCEEEEEeCCC
Confidence 48999887731 12234555 789999999987898888999999999864
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins | Back alignment and domain information |
|---|
Probab=89.01 E-value=1.6 Score=53.38 Aligned_cols=93 Identities=22% Similarity=0.284 Sum_probs=65.0
Q ss_pred cEEEEeCCCeEEEEcC--CCCeeeeeec----CCccEEEEEecCC-EEEEEecCcEEEEEeCCCcc-cccccccccCEEE
Q 003171 432 MIWTGGANGLLLQWDP--NGNRLQDFQY----LPFAVQCLCTFGS-QIWVGYMNGIVQVLDLEGNL-LGGWVAHSSPVIK 503 (842)
Q Consensus 432 ~l~Sgs~DgtIrlWD~--~g~~l~~l~~----H~~~V~sls~dG~-~LasGs~DgtIrlWD~~g~~-i~~l~gH~~~V~s 503 (842)
+.+.|-.++.|..||+ .|+.+..-.. ......|++..+. +||+|+.+|-|||+|.-|+. -..+.|-.++|..
T Consensus 544 ~tflGls~n~lfriDpR~~~~k~v~~~~k~Y~~~~~Fs~~aTt~~G~iavgs~~G~IRLyd~~g~~AKT~lp~lG~pI~~ 623 (794)
T PF08553_consen 544 QTFLGLSDNSLFRIDPRLSGNKLVDSQSKQYSSKNNFSCFATTEDGYIAVGSNKGDIRLYDRLGKRAKTALPGLGDPIIG 623 (794)
T ss_pred ceEEEECCCceEEeccCCCCCceeeccccccccCCCceEEEecCCceEEEEeCCCcEEeecccchhhhhcCCCCCCCeeE
Confidence 4677888888999999 4543322222 2344668887765 99999999999999976654 3345566789999
Q ss_pred EE--eCCCEEEEEcCCCCeeeccc
Q 003171 504 MA--VGAGYIFTLANHGGIRGWNV 525 (842)
Q Consensus 504 la--~dg~~l~S~S~DgtIrvWd~ 525 (842)
|. .||++++.. .+.-+-+.+.
T Consensus 624 iDvt~DGkwilaT-c~tyLlLi~t 646 (794)
T PF08553_consen 624 IDVTADGKWILAT-CKTYLLLIDT 646 (794)
T ss_pred EEecCCCcEEEEe-ecceEEEEEE
Confidence 87 599987733 3445666653
|
Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ]. |
| >KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=88.99 E-value=1.1 Score=54.23 Aligned_cols=55 Identities=18% Similarity=0.294 Sum_probs=48.2
Q ss_pred EEEEeCCCeEEEEcC-CCCeeeeeecCCccEEEEEecCCEEEEEec---------CcEEEEEeCC
Q 003171 433 IWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQCLCTFGSQIWVGYM---------NGIVQVLDLE 487 (842)
Q Consensus 433 l~Sgs~DgtIrlWD~-~g~~l~~l~~H~~~V~sls~dG~~LasGs~---------DgtIrlWD~~ 487 (842)
+..|...|+|-+-|. +-+.++++..|++.|..+...|..|++++. |.-|+|||++
T Consensus 190 lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSDfDv~GNlLitCG~S~R~~~l~~D~FvkVYDLR 254 (1118)
T KOG1275|consen 190 LFCGDTRGTVFLRDPNSFETIHTFDAHSGSISDFDVQGNLLITCGYSMRRYNLAMDPFVKVYDLR 254 (1118)
T ss_pred EEeecccceEEeecCCcCceeeeeeccccceeeeeccCCeEEEeecccccccccccchhhhhhhh
Confidence 677888999999999 578999999999999999999998888774 5568999976
|
|
| >PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain | Back alignment and domain information |
|---|
Probab=88.47 E-value=1.2 Score=34.41 Aligned_cols=32 Identities=25% Similarity=0.437 Sum_probs=29.0
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 003171 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNA 222 (842)
Q Consensus 191 ~~~V~~la~dpdg~~LaSGs~DGtIrlWdl~~ 222 (842)
.+.|.++.++|...+||.|+.||.|.+++++.
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~~ 42 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRLNW 42 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEECCC
Confidence 45799999999999999999999999999843
|
|
| >KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=87.59 E-value=3.3 Score=47.59 Aligned_cols=106 Identities=18% Similarity=0.135 Sum_probs=74.7
Q ss_pred EEEECCCCc-EEEEeCCCeEEEEcC-CCCeeeeeecCCccEE--EEEecCCEEEEEec-----------CcEEEEEeCC-
Q 003171 424 ALTTSIDGM-IWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQ--CLCTFGSQIWVGYM-----------NGIVQVLDLE- 487 (842)
Q Consensus 424 al~~s~dg~-l~Sgs~DgtIrlWD~-~g~~l~~l~~H~~~V~--sls~dG~~LasGs~-----------DgtIrlWD~~- 487 (842)
-+.+||-|+ |+|=+..| |.+|-. +-..++.|. |.+ |. .++|..+||++=+. ...|.|||+.
T Consensus 215 yv~wSP~GTYL~t~Hk~G-I~lWGG~~f~r~~RF~-Hp~-Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~t 291 (698)
T KOG2314|consen 215 YVRWSPKGTYLVTFHKQG-IALWGGESFDRIQRFY-HPG-VQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIAT 291 (698)
T ss_pred eEEecCCceEEEEEeccc-eeeecCccHHHHHhcc-CCC-ceeeecCCccceEEEecCCccccCcccCCCceEEEEEccc
Confidence 467999998 77877777 999998 556666664 543 34 45667789987442 2589999986
Q ss_pred Ccccccccc--cccCEEEEE---eCCCEEEEEcCCCCeeeccccCCCCCcc
Q 003171 488 GNLLGGWVA--HSSPVIKMA---VGAGYIFTLANHGGIRGWNVTSPGPLDS 533 (842)
Q Consensus 488 g~~i~~l~g--H~~~V~sla---~dg~~l~S~S~DgtIrvWd~~~~~~~d~ 533 (842)
|.+.++|.. -...+|.+. .|++++|-... .+|.|++..+..+++.
T Consensus 292 G~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~-~sisIyEtpsf~lld~ 341 (698)
T KOG2314|consen 292 GLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTG-NSISIYETPSFMLLDK 341 (698)
T ss_pred cchhcceeccCCCccccceEEeccCCceeEEecc-ceEEEEecCceeeecc
Confidence 777777776 344566654 58899886665 5688888666555543
|
|
| >PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=87.30 E-value=53 Score=36.47 Aligned_cols=106 Identities=11% Similarity=0.196 Sum_probs=53.3
Q ss_pred CcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCCC-EEE----------eeCCCcEEEEeCCCcccee--ecC
Q 003171 213 GRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWS----------GSEGGGIKIWPWEAIEKAL--SLK 279 (842)
Q Consensus 213 GtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~S----------gS~DgtIrvWd~~t~~~~l--~~~ 279 (842)
+++.+.|.+++ +.+-... .+-.-.+++||||+ +++ |-..-.|.+||..+..... .+.
T Consensus 17 ~rv~viD~d~~--------k~lGmi~--~g~~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP 86 (342)
T PF06433_consen 17 SRVYVIDADSG--------KLLGMID--TGFLGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIP 86 (342)
T ss_dssp EEEEEEETTTT--------EEEEEEE--EESSEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEET
T ss_pred ceEEEEECCCC--------cEEEEee--cccCCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecC
Confidence 36777777665 2222221 12223366899987 443 3345689999998753322 222
Q ss_pred CCceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcCCCCEEEE--eC-CCcEEEEEccCCcEEEEeecCC
Q 003171 280 PEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWS--AG-FLSFALWDARTRELLKVFNIDG 352 (842)
Q Consensus 280 ~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s--~s-~~tI~lWD~~tg~~l~~l~~~~ 352 (842)
+..+... + .....++.+.++..+.. .+ ...|.|-|+..++++..+...+
T Consensus 87 ~k~R~~~-~-----------------------~~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~PG 138 (342)
T PF06433_consen 87 PKPRAQV-V-----------------------PYKNMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTPG 138 (342)
T ss_dssp TS-B--B-S-------------------------GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGTS
T ss_pred Ccchhee-c-----------------------ccccceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecCCC
Confidence 1111100 0 01111233444544333 33 2478899999999888765544
|
4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). |
| >cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases | Back alignment and domain information |
|---|
Probab=87.22 E-value=68 Score=37.67 Aligned_cols=69 Identities=7% Similarity=0.078 Sum_probs=43.4
Q ss_pred CCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEecccCC------cE--EEEEEecCCCEEEeeCCCcEEEEeCCCccc
Q 003171 203 SGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRG------PV--LSLCISSYGDLWSGSEGGGIKIWPWEAIEK 274 (842)
Q Consensus 203 g~~LaSGs~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~------~V--~slafs~dG~L~SgS~DgtIrvWd~~t~~~ 274 (842)
++.|+.++.|+.+...|..+| +.+-+..-... .+ ..+++..+++++.++.|+.|.-.|.++++.
T Consensus 61 ~g~vy~~~~~g~l~AlD~~tG--------~~~W~~~~~~~~~~~~~~~~~~g~~~~~~~~V~v~~~~g~v~AlD~~TG~~ 132 (488)
T cd00216 61 DGDMYFTTSHSALFALDAATG--------KVLWRYDPKLPADRGCCDVVNRGVAYWDPRKVFFGTFDGRLVALDAETGKQ 132 (488)
T ss_pred CCEEEEeCCCCcEEEEECCCC--------hhhceeCCCCCccccccccccCCcEEccCCeEEEecCCCeEEEEECCCCCE
Confidence 467778888899998898887 23222211111 11 112222226788888999999999998876
Q ss_pred eeecC
Q 003171 275 ALSLK 279 (842)
Q Consensus 275 ~l~~~ 279 (842)
..+..
T Consensus 133 ~W~~~ 137 (488)
T cd00216 133 VWKFG 137 (488)
T ss_pred eeeec
Confidence 65543
|
The alignment model contains an 8-bladed beta-propeller. |
| >KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=86.83 E-value=13 Score=42.05 Aligned_cols=165 Identities=11% Similarity=0.104 Sum_probs=92.7
Q ss_pred eeeecCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCc--cCCCCCcce-----eEEecccCCcEEEEEEecCCC-EEE
Q 003171 186 ESVKGVSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARL--LDSDDGFGE-----VLSWQAHRGPVLSLCISSYGD-LWS 257 (842)
Q Consensus 186 ~~~~g~~~V~~la~dpdg~~LaSGs~DGtIrlWdl~~g~--~~~~~~~~~-----~~~l~gH~~~V~slafs~dG~-L~S 257 (842)
..+| .+||.|+.+.+.+..+.|....|.|.-|..+... .++.-.+.. +..+.--.+..+++.|+|+|. +.+
T Consensus 140 kklH-~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qist 218 (558)
T KOG0882|consen 140 KKLH-FSPVKKIRYNQAGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQIST 218 (558)
T ss_pred cccc-cCceEEEEeeccccceeeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccc
Confidence 3366 8999999999999999999999999999887421 000000000 001111235678999999997 667
Q ss_pred eeCCCcEEEEeCCCccceeecCCCc---eeeeEEEEeeceeecccceec-cceeeeecCCEEEEEEcCCCCEEEEeCCCc
Q 003171 258 GSEGGGIKIWPWEAIEKALSLKPEE---RHTAALIVERSYIDLRSHLSV-NGFSSILTSDIKNLLSDHSRAKVWSAGFLS 333 (842)
Q Consensus 258 gS~DgtIrvWd~~t~~~~l~~~~~~---~~~~~l~~~~s~~~l~~~~~~-~~~~~~~s~~v~~las~~~~~~v~s~s~~t 333 (842)
-+.|..||+.+..++.....+.... .......+.-..+.+.-...+ -..-...+....-..++.++..|.=++--+
T Consensus 219 l~~DrkVR~F~~KtGklvqeiDE~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fdes~~flly~t~~g 298 (558)
T KOG0882|consen 219 LNPDRKVRGFVFKTGKLVQEIDEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLYGTILG 298 (558)
T ss_pred cCcccEEEEEEeccchhhhhhhccchhhhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEeeccee
Confidence 7799999999998754321111000 000000000001111000000 000000011223345666666666666678
Q ss_pred EEEEEccCCcEEEEeecC
Q 003171 334 FALWDARTRELLKVFNID 351 (842)
Q Consensus 334 I~lWD~~tg~~l~~l~~~ 351 (842)
|++.++.|+.+.+.+..+
T Consensus 299 ikvin~~tn~v~ri~gk~ 316 (558)
T KOG0882|consen 299 IKVINLDTNTVVRILGKD 316 (558)
T ss_pred EEEEEeecCeEEEEeccc
Confidence 999999999998887543
|
|
| >KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=86.47 E-value=3.2 Score=48.57 Aligned_cols=85 Identities=24% Similarity=0.243 Sum_probs=59.0
Q ss_pred EEEEECCCCc-EEEEeCCCeEEEEcCCCCeeeeeecCCccEE-EEE--ecCCEEEEEecCcEEEEEeCC-Ccccccc-cc
Q 003171 423 EALTTSIDGM-IWTGGANGLLLQWDPNGNRLQDFQYLPFAVQ-CLC--TFGSQIWVGYMNGIVQVLDLE-GNLLGGW-VA 496 (842)
Q Consensus 423 ~al~~s~dg~-l~Sgs~DgtIrlWD~~g~~l~~l~~H~~~V~-sls--~dG~~LasGs~DgtIrlWD~~-g~~i~~l-~g 496 (842)
.-+.++|.-- +|.+..+|.|-+...+-+++-++.-|...|+ +++ +||+.||+|-.||+|+|-|++ |..+..+ .-
T Consensus 24 ~~~ewnP~~dLiA~~t~~gelli~R~n~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l~~~~~s 103 (665)
T KOG4640|consen 24 KRIEWNPKMDLIATRTEKGELLIHRLNWQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRLVSFLFS 103 (665)
T ss_pred EEEEEcCccchhheeccCCcEEEEEeccceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCceeccccc
Confidence 3445666543 6888888888777777667777766666666 665 689999999999999999997 5444432 22
Q ss_pred cccCEEEEEeC
Q 003171 497 HSSPVIKMAVG 507 (842)
Q Consensus 497 H~~~V~sla~d 507 (842)
-...|.++.++
T Consensus 104 ~e~~is~~~w~ 114 (665)
T KOG4640|consen 104 VETDISKGIWD 114 (665)
T ss_pred cccchheeecc
Confidence 23445555444
|
|
| >PRK13616 lipoprotein LpqB; Provisional | Back alignment and domain information |
|---|
Probab=86.33 E-value=36 Score=41.02 Aligned_cols=62 Identities=15% Similarity=0.185 Sum_probs=36.4
Q ss_pred EEEEECCCCcEEEEeCCCeEEEEcC--CCCeeeeeec--CCccEEEEEecCCEEEEEecCcEEEEE
Q 003171 423 EALTTSIDGMIWTGGANGLLLQWDP--NGNRLQDFQY--LPFAVQCLCTFGSQIWVGYMNGIVQVL 484 (842)
Q Consensus 423 ~al~~s~dg~l~Sgs~DgtIrlWD~--~g~~l~~l~~--H~~~V~sls~dG~~LasGs~DgtIrlW 484 (842)
.++.+..++.|+.+..++...+|-+ .|.....+.. ....|.+|+.....|+.+..++.+++=
T Consensus 500 ~~l~W~~~~~L~V~~~~~~~~v~~v~vDG~~~~~~~~~n~~~~v~~vaa~~~~iyv~~~~g~~~l~ 565 (591)
T PRK13616 500 VSLDWRTGDSLVVGRSDPEHPVWYVNLDGSNSDALPSRNLSAPVVAVAASPSTVYVTDARAVLQLP 565 (591)
T ss_pred ccceEecCCEEEEEecCCCCceEEEecCCccccccCCCCccCceEEEecCCceEEEEcCCceEEec
Confidence 3466777787776665554445554 5654333333 245677776655567777777755543
|
|
| >PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A | Back alignment and domain information |
|---|
Probab=84.01 E-value=23 Score=38.84 Aligned_cols=66 Identities=23% Similarity=0.386 Sum_probs=43.9
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEeccc----CCcEEEEEEecCCCEEEeeCCCcEEE
Q 003171 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAH----RGPVLSLCISSYGDLWSGSEGGGIKI 266 (842)
Q Consensus 191 ~~~V~~la~dpdg~~LaSGs~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH----~~~V~slafs~dG~L~SgS~DgtIrv 266 (842)
.+.+..+..++||++|+.++.-...+-|+.... .|+.| ...|.+|.|+|++.||....+|.|+.
T Consensus 144 ~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~------------~w~~~~r~~~~riq~~gf~~~~~lw~~~~Gg~~~~ 211 (302)
T PF14870_consen 144 SGSINDITRSSDGRYVAVSSRGNFYSSWDPGQT------------TWQPHNRNSSRRIQSMGFSPDGNLWMLARGGQIQF 211 (302)
T ss_dssp ---EEEEEE-TTS-EEEEETTSSEEEEE-TT-S------------S-EEEE--SSS-EEEEEE-TTS-EEEEETTTEEEE
T ss_pred cceeEeEEECCCCcEEEEECcccEEEEecCCCc------------cceEEccCccceehhceecCCCCEEEEeCCcEEEE
Confidence 456888888999999998877777788975432 23333 46899999999999988889998877
Q ss_pred Ee
Q 003171 267 WP 268 (842)
Q Consensus 267 Wd 268 (842)
=+
T Consensus 212 s~ 213 (302)
T PF14870_consen 212 SD 213 (302)
T ss_dssp EE
T ss_pred cc
Confidence 66
|
|
| >KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=83.17 E-value=4.1 Score=46.77 Aligned_cols=90 Identities=18% Similarity=0.275 Sum_probs=61.7
Q ss_pred EEEeCCCeEEEEcC--CCC-eeeeeecCCc----cEEEEEecCC-EEEEEecCcEEEEEeCCCcc-cccccccccCEEEE
Q 003171 434 WTGGANGLLLQWDP--NGN-RLQDFQYLPF----AVQCLCTFGS-QIWVGYMNGIVQVLDLEGNL-LGGWVAHSSPVIKM 504 (842)
Q Consensus 434 ~Sgs~DgtIrlWD~--~g~-~l~~l~~H~~----~V~sls~dG~-~LasGs~DgtIrlWD~~g~~-i~~l~gH~~~V~sl 504 (842)
+.|=.|+.|..||+ .|+ .+..-++|.. .-.|++.-+. +|++||.+|-|||||.-+.. -..+.|-..+|..|
T Consensus 398 lvGLs~n~vfriDpRv~~~~kl~~~q~kqy~~k~nFsc~aTT~sG~IvvgS~~GdIRLYdri~~~AKTAlPgLG~~I~hV 477 (644)
T KOG2395|consen 398 LVGLSDNSVFRIDPRVQGKNKLAVVQSKQYSTKNNFSCFATTESGYIVVGSLKGDIRLYDRIGRRAKTALPGLGDAIKHV 477 (644)
T ss_pred EEeecCCceEEecccccCcceeeeeeccccccccccceeeecCCceEEEeecCCcEEeehhhhhhhhhcccccCCceeeE
Confidence 45667888999998 454 4444444432 3457766554 99999999999999986654 34466777889887
Q ss_pred E--eCCCEEEEEcCCCCeeecc
Q 003171 505 A--VGAGYIFTLANHGGIRGWN 524 (842)
Q Consensus 505 a--~dg~~l~S~S~DgtIrvWd 524 (842)
. .||++|+. ..+..+-+-+
T Consensus 478 dvtadGKwil~-Tc~tyLlLi~ 498 (644)
T KOG2395|consen 478 DVTADGKWILA-TCKTYLLLID 498 (644)
T ss_pred EeeccCcEEEE-ecccEEEEEE
Confidence 6 68998773 3355555544
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 842 | ||||
| 3mtc_A | 313 | Crystal Structure Of Inpp5b In Complex With Phospha | 1e-34 | ||
| 3n9v_A | 313 | Crystal Structure Of Inpp5b Length = 313 | 3e-33 | ||
| 1i9y_A | 347 | Crystal Structure Of Inositol Polyphosphate 5-Phosp | 9e-24 | ||
| 3nr8_B | 316 | Crystal Structure Of Human Ship2 Length = 316 | 3e-17 | ||
| 2xsw_A | 357 | Crystal Structure Of Human Inpp5e Length = 357 | 4e-11 |
| >pdb|3MTC|A Chain A, Crystal Structure Of Inpp5b In Complex With Phosphatidylinositol 4- Phosphate Length = 313 | Back alignment and structure |
|
| >pdb|3N9V|A Chain A, Crystal Structure Of Inpp5b Length = 313 | Back alignment and structure |
|
| >pdb|1I9Y|A Chain A, Crystal Structure Of Inositol Polyphosphate 5-Phosphatase Domain (Ipp5c) Of Spsynaptojanin Length = 347 | Back alignment and structure |
|
| >pdb|3NR8|B Chain B, Crystal Structure Of Human Ship2 Length = 316 | Back alignment and structure |
|
| >pdb|2XSW|A Chain A, Crystal Structure Of Human Inpp5e Length = 357 | Back alignment and structure |
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 842 | |||
| 3mtc_A | 313 | Type II inositol-1,4,5-trisphosphate 5-phosphatas; | 100.0 | |
| 4a9c_A | 316 | Phosphatidylinositol-3,4,5-trisphosphate 5-phosph; | 100.0 | |
| 1i9z_A | 347 | Synaptojanin, phosphatidylinositol phosphate phosp | 100.0 | |
| 2xsw_A | 357 | 72 kDa inositol polyphosphate 5-phosphatase; inosi | 100.0 | |
| 2imq_X | 282 | Salivary nitrophorin; ferrous heme, beta-sandwich, | 100.0 | |
| 1vyh_C | 410 | Platelet-activating factor acetylhydrolase IB alph | 100.0 | |
| 4gqb_B | 344 | Methylosome protein 50; TIM barrel, beta-propeller | 100.0 | |
| 1nr0_A | 611 | Actin interacting protein 1; beta propeller, WD40 | 100.0 | |
| 2ymu_A | 577 | WD-40 repeat protein; unknown function, two domain | 100.0 | |
| 3ow8_A | 321 | WD repeat-containing protein 61; structural genomi | 100.0 | |
| 1nr0_A | 611 | Actin interacting protein 1; beta propeller, WD40 | 100.0 | |
| 1erj_A | 393 | Transcriptional repressor TUP1; beta-propeller, tr | 100.0 | |
| 4g56_B | 357 | MGC81050 protein; protein arginine methyltransfera | 100.0 | |
| 1got_B | 340 | GT-beta; complex (GTP-binding/transducer), G prote | 100.0 | |
| 2ymu_A | 577 | WD-40 repeat protein; unknown function, two domain | 100.0 | |
| 2ynn_A | 304 | Coatomer subunit beta'; protein transport, peptide | 100.0 | |
| 3fm0_A | 345 | Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r | 100.0 | |
| 2pbi_B | 354 | Guanine nucleotide-binding protein subunit beta 5; | 100.0 | |
| 3iz6_a | 380 | 40S ribosomal protein RACK1 (RACK1); eukaryotic ri | 100.0 | |
| 1vyh_C | 410 | Platelet-activating factor acetylhydrolase IB alph | 100.0 | |
| 2hes_X | 330 | YDR267CP; beta-propeller, WD40 repeat, biosyntheti | 100.0 | |
| 4ery_A | 312 | WD repeat-containing protein 5; WD40, WIN motif, b | 99.98 | |
| 3ow8_A | 321 | WD repeat-containing protein 61; structural genomi | 99.98 | |
| 3frx_A | 319 | Guanine nucleotide-binding protein subunit beta- l | 99.98 | |
| 2xzm_R | 343 | RACK1; ribosome, translation; 3.93A {Tetrahymena t | 99.97 | |
| 3sfz_A | 1249 | APAF-1, apoptotic peptidase activating factor 1; a | 99.97 | |
| 2oaj_A | 902 | Protein SNI1; WD40 repeat, beta propeller, endocyt | 99.97 | |
| 1got_B | 340 | GT-beta; complex (GTP-binding/transducer), G prote | 99.97 | |
| 4aow_A | 340 | Guanine nucleotide-binding protein subunit beta-2; | 99.97 | |
| 2pm9_A | 416 | Protein WEB1, protein transport protein SEC31; bet | 99.97 | |
| 3vl1_A | 420 | 26S proteasome regulatory subunit RPN14; beta-prop | 99.97 | |
| 4gqb_B | 344 | Methylosome protein 50; TIM barrel, beta-propeller | 99.97 | |
| 2pm7_B | 297 | Protein transport protein SEC13, protein transport | 99.97 | |
| 1p22_A | 435 | F-BOX/WD-repeat protein 1A; ubiquitination, degrad | 99.97 | |
| 1r5m_A | 425 | SIR4-interacting protein SIF2; transcription corep | 99.97 | |
| 1pgu_A | 615 | Actin interacting protein 1; WD repeat, seven-blad | 99.97 | |
| 1gxr_A | 337 | ESG1, transducin-like enhancer protein 1; transcri | 99.97 | |
| 4ggc_A | 318 | P55CDC, cell division cycle protein 20 homolog; ce | 99.97 | |
| 3dm0_A | 694 | Maltose-binding periplasmic protein fused with RAC | 99.97 | |
| 4h5i_A | 365 | Guanine nucleotide-exchange factor SEC12; copii ve | 99.97 | |
| 2ovr_B | 445 | FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 | 99.97 | |
| 4gga_A | 420 | P55CDC, cell division cycle protein 20 homolog; ce | 99.96 | |
| 3bg1_A | 316 | Protein SEC13 homolog; NPC, transport, WD repeat, | 99.96 | |
| 4g56_B | 357 | MGC81050 protein; protein arginine methyltransfera | 99.96 | |
| 3v7d_B | 464 | Cell division control protein 4; WD 40 domain, pho | 99.96 | |
| 1erj_A | 393 | Transcriptional repressor TUP1; beta-propeller, tr | 99.96 | |
| 3fm0_A | 345 | Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r | 99.96 | |
| 3sfz_A | 1249 | APAF-1, apoptotic peptidase activating factor 1; a | 99.96 | |
| 3k26_A | 366 | Polycomb protein EED; WD40, structural genomics, N | 99.96 | |
| 2ynn_A | 304 | Coatomer subunit beta'; protein transport, peptide | 99.96 | |
| 3zwl_B | 369 | Eukaryotic translation initiation factor 3 subuni; | 99.96 | |
| 2xzm_R | 343 | RACK1; ribosome, translation; 3.93A {Tetrahymena t | 99.96 | |
| 3i2n_A | 357 | WD repeat-containing protein 92; WD40 repeats, str | 99.96 | |
| 2pbi_B | 354 | Guanine nucleotide-binding protein subunit beta 5; | 99.96 | |
| 2hes_X | 330 | YDR267CP; beta-propeller, WD40 repeat, biosyntheti | 99.96 | |
| 1k8k_C | 372 | P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta- | 99.96 | |
| 2oaj_A | 902 | Protein SNI1; WD40 repeat, beta propeller, endocyt | 99.96 | |
| 2j04_B | 524 | YDR362CP, TAU91; beta propeller, type 2 promoters, | 99.96 | |
| 3odt_A | 313 | Protein DOA1; ubiquitin, nuclear protein; HET: MSE | 99.96 | |
| 1r5m_A | 425 | SIR4-interacting protein SIF2; transcription corep | 99.96 | |
| 1sq9_A | 397 | Antiviral protein SKI8; WD repeat, beta-transducin | 99.96 | |
| 4e54_B | 435 | DNA damage-binding protein 2; beta barrel, double | 99.96 | |
| 3dwl_C | 377 | Actin-related protein 2/3 complex subunit 1; prope | 99.96 | |
| 2ovr_B | 445 | FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 | 99.96 | |
| 3ei3_B | 383 | DNA damage-binding protein 2; UV-damage, DDB, nucl | 99.95 | |
| 4aez_A | 401 | CDC20, WD repeat-containing protein SLP1; cell cyc | 99.95 | |
| 3f3f_A | 351 | Nucleoporin SEH1; structural protein, protein comp | 99.95 | |
| 4ery_A | 312 | WD repeat-containing protein 5; WD40, WIN motif, b | 99.95 | |
| 3gre_A | 437 | Serine/threonine-protein kinase VPS15; seven-blade | 99.95 | |
| 3iz6_a | 380 | 40S ribosomal protein RACK1 (RACK1); eukaryotic ri | 99.95 | |
| 1pgu_A | 615 | Actin interacting protein 1; WD repeat, seven-blad | 99.95 | |
| 4a11_B | 408 | DNA excision repair protein ERCC-8; DNA binding pr | 99.95 | |
| 3frx_A | 319 | Guanine nucleotide-binding protein subunit beta- l | 99.95 | |
| 3v7d_B | 464 | Cell division control protein 4; WD 40 domain, pho | 99.95 | |
| 3mmy_A | 368 | MRNA export factor; mRNA export, nuclear protein; | 99.95 | |
| 3jrp_A | 379 | Fusion protein of protein transport protein SEC13 | 99.95 | |
| 3dw8_B | 447 | Serine/threonine-protein phosphatase 2A 55 kDa RE | 99.95 | |
| 1p22_A | 435 | F-BOX/WD-repeat protein 1A; ubiquitination, degrad | 99.95 | |
| 3dm0_A | 694 | Maltose-binding periplasmic protein fused with RAC | 99.94 | |
| 3vl1_A | 420 | 26S proteasome regulatory subunit RPN14; beta-prop | 99.94 | |
| 2pm9_A | 416 | Protein WEB1, protein transport protein SEC31; bet | 99.94 | |
| 1yfq_A | 342 | Cell cycle arrest protein BUB3; WD repeat WD40 rep | 99.94 | |
| 1gxr_A | 337 | ESG1, transducin-like enhancer protein 1; transcri | 99.94 | |
| 4h5i_A | 365 | Guanine nucleotide-exchange factor SEC12; copii ve | 99.94 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 99.94 | |
| 2j04_B | 524 | YDR362CP, TAU91; beta propeller, type 2 promoters, | 99.94 | |
| 3k26_A | 366 | Polycomb protein EED; WD40, structural genomics, N | 99.93 | |
| 4aow_A | 340 | Guanine nucleotide-binding protein subunit beta-2; | 99.93 | |
| 4gq1_A | 393 | NUP37; propeller, transport protein; 2.40A {Schizo | 99.93 | |
| 2pm7_B | 297 | Protein transport protein SEC13, protein transport | 99.93 | |
| 3dw8_B | 447 | Serine/threonine-protein phosphatase 2A 55 kDa RE | 99.93 | |
| 2aq5_A | 402 | Coronin-1A; WD40 repeat, 7-bladed beta-propeller, | 99.93 | |
| 3bg1_A | 316 | Protein SEC13 homolog; NPC, transport, WD repeat, | 99.93 | |
| 1sq9_A | 397 | Antiviral protein SKI8; WD repeat, beta-transducin | 99.93 | |
| 3i2n_A | 357 | WD repeat-containing protein 92; WD40 repeats, str | 99.93 | |
| 3ei3_B | 383 | DNA damage-binding protein 2; UV-damage, DDB, nucl | 99.93 | |
| 3jro_A | 753 | Fusion protein of protein transport protein SEC13 | 99.92 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 99.92 | |
| 3zwl_B | 369 | Eukaryotic translation initiation factor 3 subuni; | 99.92 | |
| 2w18_A | 356 | PALB2, fancn, partner and localizer of BRCA2; fanc | 99.92 | |
| 3odt_A | 313 | Protein DOA1; ubiquitin, nuclear protein; HET: MSE | 99.92 | |
| 1k8k_C | 372 | P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta- | 99.92 | |
| 4a11_B | 408 | DNA excision repair protein ERCC-8; DNA binding pr | 99.92 | |
| 2j04_A | 588 | TAU60, YPL007P, hypothetical protein YPL007C; beta | 99.92 | |
| 2vdu_B | 450 | TRNA (guanine-N(7)-)-methyltransferase- associated | 99.92 | |
| 3gre_A | 437 | Serine/threonine-protein kinase VPS15; seven-blade | 99.92 | |
| 3f3f_A | 351 | Nucleoporin SEH1; structural protein, protein comp | 99.91 | |
| 2xyi_A | 430 | Probable histone-binding protein CAF1; transcripti | 99.91 | |
| 3dwl_C | 377 | Actin-related protein 2/3 complex subunit 1; prope | 99.91 | |
| 4e54_B | 435 | DNA damage-binding protein 2; beta barrel, double | 99.91 | |
| 3vu4_A | 355 | KMHSV2; beta-propeller fold, protein transport; 2. | 99.91 | |
| 2aq5_A | 402 | Coronin-1A; WD40 repeat, 7-bladed beta-propeller, | 99.9 | |
| 1yfq_A | 342 | Cell cycle arrest protein BUB3; WD repeat WD40 rep | 99.9 | |
| 3mmy_A | 368 | MRNA export factor; mRNA export, nuclear protein; | 99.9 | |
| 1l0q_A | 391 | Surface layer protein; SLP, S-layer, 7-bladed beta | 99.9 | |
| 2vdu_B | 450 | TRNA (guanine-N(7)-)-methyltransferase- associated | 99.9 | |
| 3lrv_A | 343 | PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu | 99.9 | |
| 4gq1_A | 393 | NUP37; propeller, transport protein; 2.40A {Schizo | 99.9 | |
| 4gga_A | 420 | P55CDC, cell division cycle protein 20 homolog; ce | 99.89 | |
| 2j04_A | 588 | TAU60, YPL007P, hypothetical protein YPL007C; beta | 99.89 | |
| 3jrp_A | 379 | Fusion protein of protein transport protein SEC13 | 99.89 | |
| 4ggc_A | 318 | P55CDC, cell division cycle protein 20 homolog; ce | 99.89 | |
| 3lrv_A | 343 | PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu | 99.89 | |
| 3bws_A | 433 | Protein LP49; two-domain, immunoglobulin-like, 7-b | 99.89 | |
| 2w18_A | 356 | PALB2, fancn, partner and localizer of BRCA2; fanc | 99.89 | |
| 4aez_A | 401 | CDC20, WD repeat-containing protein SLP1; cell cyc | 99.89 | |
| 3vu4_A | 355 | KMHSV2; beta-propeller fold, protein transport; 2. | 99.87 | |
| 2xyi_A | 430 | Probable histone-binding protein CAF1; transcripti | 99.86 | |
| 3jro_A | 753 | Fusion protein of protein transport protein SEC13 | 99.85 | |
| 1l0q_A | 391 | Surface layer protein; SLP, S-layer, 7-bladed beta | 99.85 | |
| 3bws_A | 433 | Protein LP49; two-domain, immunoglobulin-like, 7-b | 99.83 | |
| 1nir_A | 543 | Nitrite reductase; hemoprotein, denitrification, d | 99.81 | |
| 1nir_A | 543 | Nitrite reductase; hemoprotein, denitrification, d | 99.79 | |
| 2hqs_A | 415 | Protein TOLB; TOLB, PAL, TOL, transport protein-li | 99.78 | |
| 2hqs_A | 415 | Protein TOLB; TOLB, PAL, TOL, transport protein-li | 99.77 | |
| 1k32_A | 1045 | Tricorn protease; protein degradation, substrate g | 99.76 | |
| 3u4y_A | 331 | Uncharacterized protein; structural genomics, PSI- | 99.72 | |
| 2ecf_A | 741 | Dipeptidyl peptidase IV; prolyl oligopeptidase fam | 99.71 | |
| 2ojh_A | 297 | Uncharacterized protein ATU1656/AGR_C_3050; TOLB, | 99.71 | |
| 3vgz_A | 353 | Uncharacterized protein YNCE; beta-propeller, prot | 99.68 | |
| 1ri6_A | 343 | Putative isomerase YBHE; 7-bladed propeller, enzym | 99.68 | |
| 3o4h_A | 582 | Acylamino-acid-releasing enzyme; alpha/beta hydrol | 99.66 | |
| 1xfd_A | 723 | DIP, dipeptidyl aminopeptidase-like protein 6, dip | 99.66 | |
| 2z3z_A | 706 | Dipeptidyl aminopeptidase IV; peptidase family S9, | 99.66 | |
| 1pby_B | 337 | Quinohemoprotein amine dehydrogenase 40 kDa subuni | 99.65 | |
| 1k32_A | 1045 | Tricorn protease; protein degradation, substrate g | 99.63 | |
| 3vgz_A | 353 | Uncharacterized protein YNCE; beta-propeller, prot | 99.62 | |
| 2ecf_A | 741 | Dipeptidyl peptidase IV; prolyl oligopeptidase fam | 99.61 | |
| 2z3z_A | 706 | Dipeptidyl aminopeptidase IV; peptidase family S9, | 99.6 | |
| 3hfq_A | 347 | Uncharacterized protein LP_2219; Q88V64_lacpl, NES | 99.59 | |
| 2oit_A | 434 | Nucleoporin 214KDA; NH2 terminal domain of NUP214/ | 99.58 | |
| 1jmx_B | 349 | Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; | 99.57 | |
| 2ojh_A | 297 | Uncharacterized protein ATU1656/AGR_C_3050; TOLB, | 99.57 | |
| 1jmx_B | 349 | Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; | 99.56 | |
| 1xfd_A | 723 | DIP, dipeptidyl aminopeptidase-like protein 6, dip | 99.56 | |
| 1pby_B | 337 | Quinohemoprotein amine dehydrogenase 40 kDa subuni | 99.56 | |
| 3u4y_A | 331 | Uncharacterized protein; structural genomics, PSI- | 99.54 | |
| 1q7f_A | 286 | NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL | 99.54 | |
| 1z68_A | 719 | Fibroblast activation protein, alpha subunit; sepr | 99.54 | |
| 2oit_A | 434 | Nucleoporin 214KDA; NH2 terminal domain of NUP214/ | 99.53 | |
| 3pe7_A | 388 | Oligogalacturonate lyase; seven-bladed beta-propel | 99.49 | |
| 1z68_A | 719 | Fibroblast activation protein, alpha subunit; sepr | 99.47 | |
| 3scy_A | 361 | Hypothetical bacterial 6-phosphogluconolactonase; | 99.45 | |
| 3hfq_A | 347 | Uncharacterized protein LP_2219; Q88V64_lacpl, NES | 99.45 | |
| 1ri6_A | 343 | Putative isomerase YBHE; 7-bladed propeller, enzym | 99.43 | |
| 4a2l_A | 795 | BT_4663, two-component system sensor histidine kin | 99.43 | |
| 3fvz_A | 329 | Peptidyl-glycine alpha-amidating monooxygenase; be | 99.42 | |
| 1jof_A | 365 | Carboxy-CIS,CIS-muconate cyclase; beta-propeller, | 99.39 | |
| 3scy_A | 361 | Hypothetical bacterial 6-phosphogluconolactonase; | 99.37 | |
| 3e5z_A | 296 | Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco | 99.33 | |
| 3azo_A | 662 | Aminopeptidase; POP family, hydrolase; 2.00A {Stre | 99.31 | |
| 3v9f_A | 781 | Two-component system sensor histidine kinase/RESP | 99.31 | |
| 3o4h_A | 582 | Acylamino-acid-releasing enzyme; alpha/beta hydrol | 99.3 | |
| 4a5s_A | 740 | Dipeptidyl peptidase 4 soluble form; hydrolase, ty | 99.3 | |
| 1jof_A | 365 | Carboxy-CIS,CIS-muconate cyclase; beta-propeller, | 99.29 | |
| 3fvz_A | 329 | Peptidyl-glycine alpha-amidating monooxygenase; be | 99.28 | |
| 2oiz_A | 361 | Aromatic amine dehydrogenase, large subunit; oxido | 99.26 | |
| 3c5m_A | 396 | Oligogalacturonate lyase; blade-shaped beta-propel | 99.26 | |
| 2oiz_A | 361 | Aromatic amine dehydrogenase, large subunit; oxido | 99.23 | |
| 2z2n_A | 299 | Virginiamycin B lyase; seven-bladed beta-propeller | 99.23 | |
| 2gop_A | 347 | Trilobed protease; beta propeller, open velcro, hy | 99.23 | |
| 1q7f_A | 286 | NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL | 99.22 | |
| 2dg1_A | 333 | DRP35, lactonase; beta propeller, hydrolase; 1.72A | 99.2 | |
| 4a2l_A | 795 | BT_4663, two-component system sensor histidine kin | 99.14 | |
| 4a5s_A | 740 | Dipeptidyl peptidase 4 soluble form; hydrolase, ty | 99.14 | |
| 2dg1_A | 333 | DRP35, lactonase; beta propeller, hydrolase; 1.72A | 99.13 | |
| 3e5z_A | 296 | Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco | 99.12 | |
| 1rwi_B | 270 | Serine/threonine-protein kinase PKND; beta propell | 99.11 | |
| 3v9f_A | 781 | Two-component system sensor histidine kinase/RESP | 99.1 | |
| 3hxj_A | 330 | Pyrrolo-quinoline quinone; all beta protein. incom | 99.1 | |
| 2xdw_A | 710 | Prolyl endopeptidase; alpha/beta-hydrolase, amnesi | 99.08 | |
| 2gop_A | 347 | Trilobed protease; beta propeller, open velcro, hy | 99.06 | |
| 3dsm_A | 328 | Uncharacterized protein bacuni_02894; seven_blated | 99.06 | |
| 2z2n_A | 299 | Virginiamycin B lyase; seven-bladed beta-propeller | 99.06 | |
| 2bkl_A | 695 | Prolyl endopeptidase; mechanistic study, celiac sp | 99.05 | |
| 3azo_A | 662 | Aminopeptidase; POP family, hydrolase; 2.00A {Stre | 99.05 | |
| 3no2_A | 276 | Uncharacterized protein; six-bladed beta-propeller | 99.03 | |
| 1pjx_A | 314 | Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries | 99.02 | |
| 3dsm_A | 328 | Uncharacterized protein bacuni_02894; seven_blated | 99.01 | |
| 3pe7_A | 388 | Oligogalacturonate lyase; seven-bladed beta-propel | 98.99 | |
| 1rwi_B | 270 | Serine/threonine-protein kinase PKND; beta propell | 98.97 | |
| 2qc5_A | 300 | Streptogramin B lactonase; beta propeller, lyase; | 98.96 | |
| 3q7m_A | 376 | Lipoprotein YFGL, BAMB; beta-propeller, BAM comple | 98.86 | |
| 1qks_A | 567 | Cytochrome CD1 nitrite reductase; enzyme, oxidored | 98.86 | |
| 2bkl_A | 695 | Prolyl endopeptidase; mechanistic study, celiac sp | 98.84 | |
| 1pjx_A | 314 | Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries | 98.83 | |
| 2qc5_A | 300 | Streptogramin B lactonase; beta propeller, lyase; | 98.83 | |
| 3hxj_A | 330 | Pyrrolo-quinoline quinone; all beta protein. incom | 98.8 | |
| 2xdw_A | 710 | Prolyl endopeptidase; alpha/beta-hydrolase, amnesi | 98.79 | |
| 3ott_A | 758 | Two-component system sensor histidine kinase; beta | 98.78 | |
| 3dr2_A | 305 | Exported gluconolactonase; gluconolactonase SMP-30 | 98.78 | |
| 1yr2_A | 741 | Prolyl oligopeptidase; prolyl endopeptidase, mecha | 98.75 | |
| 3c5m_A | 396 | Oligogalacturonate lyase; blade-shaped beta-propel | 98.75 | |
| 3no2_A | 276 | Uncharacterized protein; six-bladed beta-propeller | 98.75 | |
| 3g4e_A | 297 | Regucalcin; six bladed beta-propeller, gluconolcat | 98.74 | |
| 3hrp_A | 409 | Uncharacterized protein; NP_812590.1, structural g | 98.7 | |
| 3ott_A | 758 | Two-component system sensor histidine kinase; beta | 98.67 | |
| 2ghs_A | 326 | AGR_C_1268P; regucalcin, structural genomics, join | 98.65 | |
| 3sjl_D | 386 | Methylamine dehydrogenase heavy chain; MAUG, C-hem | 98.63 | |
| 4gz1_A | 256 | Tyrosyl-DNA phosphodiesterase 2; protein-DNA compl | 98.61 | |
| 2qe8_A | 343 | Uncharacterized protein; structural genomics, join | 98.6 | |
| 1qks_A | 567 | Cytochrome CD1 nitrite reductase; enzyme, oxidored | 98.6 | |
| 3g4e_A | 297 | Regucalcin; six bladed beta-propeller, gluconolcat | 98.57 | |
| 3iuj_A | 693 | Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas | 98.57 | |
| 4fva_A | 256 | 5'-tyrosyl-DNA phosphodiesterase; 5'-phosphotyrosy | 98.57 | |
| 3q7m_A | 376 | Lipoprotein YFGL, BAMB; beta-propeller, BAM comple | 98.54 | |
| 1xip_A | 388 | Nucleoporin NUP159; beta-propeller, transport prot | 98.54 | |
| 4f1h_A | 250 | Tyrosyl-DNA phosphodiesterase 2; hydrolase-DNA com | 98.51 | |
| 2hz6_A | 369 | Endoplasmic reticulum to nucleus signalling 1 isof | 98.49 | |
| 2mad_H | 373 | Methylamine dehydrogenase (heavy subunit); oxidore | 98.48 | |
| 1yr2_A | 741 | Prolyl oligopeptidase; prolyl endopeptidase, mecha | 98.47 | |
| 3teb_A | 266 | Endonuclease/exonuclease/phosphatase; PSI-biology, | 98.46 | |
| 3hrp_A | 409 | Uncharacterized protein; NP_812590.1, structural g | 98.46 | |
| 4gew_A | 362 | 5'-tyrosyl-DNA phosphodiesterase; 5'-phosphotyrosy | 98.43 | |
| 1ako_A | 268 | Exonuclease III; AP-endonuclease, DNA repair; 1.70 | 98.43 | |
| 2mad_H | 373 | Methylamine dehydrogenase (heavy subunit); oxidore | 98.42 | |
| 2ghs_A | 326 | AGR_C_1268P; regucalcin, structural genomics, join | 98.4 | |
| 3dr2_A | 305 | Exported gluconolactonase; gluconolactonase SMP-30 | 98.39 | |
| 3sjl_D | 386 | Methylamine dehydrogenase heavy chain; MAUG, C-hem | 98.36 | |
| 3c75_H | 426 | MADH, methylamine dehydrogenase heavy chain; coppe | 98.31 | |
| 1xip_A | 388 | Nucleoporin NUP159; beta-propeller, transport prot | 98.23 | |
| 2fp8_A | 322 | Strictosidine synthase; six bladed beta propeller | 98.17 | |
| 2hz6_A | 369 | Endoplasmic reticulum to nucleus signalling 1 isof | 98.15 | |
| 1yiq_A | 689 | Quinohemoprotein alcohol dehydrogenase; electron t | 98.07 | |
| 1kb0_A | 677 | Quinohemoprotein alcohol dehydrogenase; beta-prope | 98.07 | |
| 3g6s_A | 267 | Putative endonuclease/exonuclease/phosphatase fami | 98.04 | |
| 3l1w_A | 257 | Uncharacterized protein; APC29019.2, conserved pro | 98.03 | |
| 1yiq_A | 689 | Quinohemoprotein alcohol dehydrogenase; electron t | 98.02 | |
| 3mpr_A | 298 | Putative endonuclease/exonuclease/phosphatase FAM | 98.01 | |
| 1mda_H | 368 | Methylamine dehydrogenase (heavy subunit); electro | 97.99 | |
| 1zwx_A | 301 | SMCL, sphingomyelinase-C; dnase1-like fold, beta-h | 97.96 | |
| 3iuj_A | 693 | Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas | 97.96 | |
| 1npe_A | 267 | Nidogen, entactin; glycoprotein, basement membrane | 97.84 | |
| 2jc4_A | 256 | Exodeoxyribonuclease III; hydrolase, repair phosph | 97.83 | |
| 2ddr_A | 306 | Sphingomyelin phosphodiesterase; DNAse I like fold | 97.77 | |
| 1mda_H | 368 | Methylamine dehydrogenase (heavy subunit); electro | 97.77 | |
| 1kb0_A | 677 | Quinohemoprotein alcohol dehydrogenase; beta-prope | 97.74 | |
| 1vyb_A | 238 | ORF2 contains A reverse transcriptase domain; endo | 97.72 | |
| 3i41_A | 317 | Beta-hemolysin; beta toxin, sphingomyelinase, toxi | 97.71 | |
| 2qe8_A | 343 | Uncharacterized protein; structural genomics, join | 97.59 | |
| 1wdu_A | 245 | TRAS1 ORF2P; four-layered alpha/beta sandwich, RNA | 97.52 | |
| 2voa_A | 257 | AF_EXO, XTHA, exodeoxyribonuclease III; EXOIII, AP | 97.49 | |
| 2o3h_A | 285 | DNA-(apurinic or apyrimidinic site) lyase; APE, en | 97.48 | |
| 2jc5_A | 259 | Exodeoxyribonuclease; hydrolase, repair phosphodie | 97.47 | |
| 1npe_A | 267 | Nidogen, entactin; glycoprotein, basement membrane | 97.45 | |
| 3c75_H | 426 | MADH, methylamine dehydrogenase heavy chain; coppe | 97.33 | |
| 1hd7_A | 318 | DNA-(apurinic or apyrimidinic site) lyase; DNA rep | 97.21 | |
| 2j63_A | 467 | AP-endonuclease; base excision repair, lyase; 2.48 | 97.19 | |
| 3nol_A | 262 | Glutamine cyclotransferase; beta-propeller, glutam | 97.13 | |
| 2iwa_A | 266 | Glutamine cyclotransferase; pyroglutamate, acyltra | 97.13 | |
| 2ei9_A | 240 | Non-LTR retrotransposon R1BMKS ORF2 protein; four | 96.92 | |
| 1kv9_A | 668 | Type II quinohemoprotein alcohol dehydrogenase; el | 96.92 | |
| 3g91_A | 265 | MTH0212, exodeoxyribonuclease; double-strand speci | 96.87 | |
| 1kv9_A | 668 | Type II quinohemoprotein alcohol dehydrogenase; el | 96.77 | |
| 2a40_B | 260 | Deoxyribonuclease-1; WAVE, WH2, WAsp, actin, DNAse | 96.76 | |
| 3mbr_X | 243 | Glutamine cyclotransferase; beta-propeller; 1.44A | 96.73 | |
| 1w6s_A | 599 | Methanol dehydrogenase subunit 1; anisotropic, ele | 96.73 | |
| 2ad6_A | 571 | Methanol dehydrogenase subunit 1; PQQ configuratio | 96.72 | |
| 2iwa_A | 266 | Glutamine cyclotransferase; pyroglutamate, acyltra | 96.55 | |
| 2fp8_A | 322 | Strictosidine synthase; six bladed beta propeller | 96.53 | |
| 3v65_B | 386 | Low-density lipoprotein receptor-related protein; | 96.49 | |
| 3nok_A | 268 | Glutaminyl cyclase; beta-propeller, cyclotransfera | 96.48 | |
| 3nol_A | 262 | Glutamine cyclotransferase; beta-propeller, glutam | 96.34 | |
| 2p4o_A | 306 | Hypothetical protein; putative lactonase, structur | 96.34 | |
| 1ijq_A | 316 | LDL receptor, low-density lipoprotein receptor; be | 96.28 | |
| 3sov_A | 318 | LRP-6, low-density lipoprotein receptor-related pr | 96.27 | |
| 2ece_A | 462 | 462AA long hypothetical selenium-binding protein; | 96.26 | |
| 1fwx_A | 595 | Nitrous oxide reductase; beta-propeller domain, cu | 96.15 | |
| 3v64_C | 349 | Agrin; beta propeller, laminin-G, signaling, prote | 96.12 | |
| 3p5b_L | 400 | Low density lipoprotein receptor variant; B-propel | 96.03 | |
| 3ngq_A | 398 | CCR4-NOT transcription complex subunit 6-like; alp | 96.02 | |
| 2ad6_A | 571 | Methanol dehydrogenase subunit 1; PQQ configuratio | 95.79 | |
| 2ece_A | 462 | 462AA long hypothetical selenium-binding protein; | 95.77 | |
| 3nok_A | 268 | Glutaminyl cyclase; beta-propeller, cyclotransfera | 95.74 | |
| 3m0c_C | 791 | LDL receptor, low-density lipoprotein receptor; pr | 95.63 | |
| 1k3i_A | 656 | Galactose oxidase precursor; blade beta propeller, | 95.6 | |
| 1flg_A | 582 | Protein (quinoprotein ethanol dehydrogenase); supe | 95.59 | |
| 1sr4_B | 261 | CDT B, cytolethal distending toxin protein B; bact | 95.57 | |
| 1flg_A | 582 | Protein (quinoprotein ethanol dehydrogenase); supe | 95.54 | |
| 2xe4_A | 751 | Oligopeptidase B; hydrolase-inhibitor complex, hyd | 95.46 | |
| 4hw6_A | 433 | Hypothetical protein, IPT/TIG domain protein; puta | 95.45 | |
| 3tc9_A | 430 | Hypothetical hydrolase; 6-bladed beta-propeller, i | 95.03 | |
| 2xbg_A | 327 | YCF48-like protein; photosynthesis, photosystem II | 95.03 | |
| 3mbr_X | 243 | Glutamine cyclotransferase; beta-propeller; 1.44A | 94.99 | |
| 1w6s_A | 599 | Methanol dehydrogenase subunit 1; anisotropic, ele | 94.99 | |
| 1fwx_A | 595 | Nitrous oxide reductase; beta-propeller domain, cu | 94.57 | |
| 3v64_C | 349 | Agrin; beta propeller, laminin-G, signaling, prote | 93.82 | |
| 3p5b_L | 400 | Low density lipoprotein receptor variant; B-propel | 93.68 | |
| 4a0p_A | 628 | LRP6, LRP-6, low-density lipoprotein receptor-rela | 93.64 | |
| 4b8c_D | 727 | Glucose-repressible alcohol dehydrogenase transcr | 93.39 | |
| 3m0c_C | 791 | LDL receptor, low-density lipoprotein receptor; pr | 93.38 | |
| 2xbg_A | 327 | YCF48-like protein; photosynthesis, photosystem II | 92.92 | |
| 2f1n_A | 262 | CDT B, cytolethal distending toxin subunit B; E.co | 92.74 | |
| 3v65_B | 386 | Low-density lipoprotein receptor-related protein; | 92.51 | |
| 1ijq_A | 316 | LDL receptor, low-density lipoprotein receptor; be | 92.48 | |
| 4hw6_A | 433 | Hypothetical protein, IPT/TIG domain protein; puta | 92.44 | |
| 1n7d_A | 699 | LDL receptor, low-density lipoprotein receptor; fa | 91.88 | |
| 4a0p_A | 628 | LRP6, LRP-6, low-density lipoprotein receptor-rela | 90.88 | |
| 2ism_A | 352 | Putative oxidoreductase; BL41XU spring-8, bladed b | 88.34 | |
| 3qqz_A | 255 | Putative uncharacterized protein YJIK; MCSG, PSI-2 | 87.59 | |
| 3sov_A | 318 | LRP-6, low-density lipoprotein receptor-related pr | 87.14 | |
| 1n7d_A | 699 | LDL receptor, low-density lipoprotein receptor; fa | 86.22 | |
| 3kya_A | 496 | Putative phosphatase; structural genomics, joint c | 83.24 | |
| 3s94_A | 619 | LRP-6, low-density lipoprotein receptor-related pr | 81.82 | |
| 2p4o_A | 306 | Hypothetical protein; putative lactonase, structur | 81.21 | |
| 3pbp_A | 452 | Nucleoporin NUP82; beta-propeller, mRNA export, mR | 80.5 |
| >3mtc_A Type II inositol-1,4,5-trisphosphate 5-phosphatas; INPP5BA,phosphoinositide 5-phosphatase, inositol signalling, phosphatase, magnesium; HET: PIF; 2.40A {Homo sapiens} PDB: 3n9v_A | Back alignment and structure |
|---|
Probab=100.00 E-value=6.3e-67 Score=560.20 Aligned_cols=257 Identities=28% Similarity=0.593 Sum_probs=230.4
Q ss_pred cccccceeEEEEEEEeCCCCCCcccccccccCCCCCceEEEEEeecccCccchhhhhhhhhhcccCCCcchhhHHHHHhh
Q 003171 546 YTRMENLKILAGTWNVGQGRASQDALISWLGSAASDVGIVVVGLQEVEMGAGFLAMSAAKETVGLEGSAVGHWWLDMIGK 625 (842)
Q Consensus 546 y~~~~~~~i~~~twNv~~~~~~~~~l~~~l~~~~~~~di~viglQE~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~l~~ 625 (842)
|+...+++|+++|||||+..| +++|.+||.....+||||||||||+++++..+. ..++...+.|.+.|.+
T Consensus 2 yt~~~~~~i~v~TwNvng~~~-~~~l~~wL~~~~~~pDI~viGlQE~~l~~~~~~---------~~~~~~~~~W~~~i~~ 71 (313)
T 3mtc_A 2 YTYIQNFRFFAGTYNVNGQSP-KECLRLWLSNGIQAPDVYCVGFQELDLSKEAFF---------FHDTPKEEEWFKAVSE 71 (313)
T ss_dssp CEEEEEEEEEEEEEECTTCCC-CSCTHHHHSSSCCCCSEEEEEEECSCCSHHHHT---------TCCCHHHHHHHHHHHH
T ss_pred CceeeccEEEEEEEEcCCccC-chhHHHHhcccCCCCCeEEEEEEecccchhhhc---------ccCcchHHHHHHHHHH
Confidence 777888999999999999877 578999999766789999999999988653221 1233446899999999
Q ss_pred hccCCCceEEEeeeeceeeEEEEEEeccccCccCceeeceeecccCcccCCCCeeEEEEEEeCeEEEEEeecCcCCcchH
Q 003171 626 ILDDGSTFERVGSRQLAGLLIAVWVRKNLKDYVGDVDVAAVPCGFGRAIGNKGAVGLRVRVYDRIMCFVNCHFAAHLEAV 705 (842)
Q Consensus 626 ~l~~~~~y~~v~s~~l~g~~l~vf~r~~~~~~i~~v~~~~v~~G~~~~~gnKG~v~i~~~i~~~~~~Fv~~HLaa~~~~~ 705 (842)
+|+.+..|++|++.+|+||+|+||||+++.++|++|+++.|+||++|.+||||||+|||.+++++|||||||||||++++
T Consensus 72 ~L~~~~~Y~~v~s~~lvGl~l~Vfvr~~~~~~i~~v~~~~v~tG~~g~~GNKGaV~ir~~~~~ts~cFVnsHLaA~~~~~ 151 (313)
T 3mtc_A 72 GLHPDAKYAKVKLIRLVGIMLLLYVKQEHAAYISEVEAETVGTGIMGRMGNKGGVAIRFQFHNTSICVVNSHLAAHIEEY 151 (313)
T ss_dssp HSCTTSCEEEEEEEEETTEEEEEEEEGGGGGGEEEEEEEEEECSGGGTSTTSEEEEEEEEETTEEEEEEEEECCCSGGGH
T ss_pred hcCCCCCEEEEEEechhhhhhhhhhhhhhhhhcceeEeeeecccccccccCCceEEEEEEECCcEEEEEeeccCCCchHH
Confidence 99877789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCcCCCCCccchhccCCCceeeecccCCCCCCCccCCCCCcCcccEEEEeccceeeecCCChHHHHH
Q 003171 706 NRRNADFDHVYRTMTFCRPSNLCSAAAAGASSVVQMLRSTNPLSGLTVEGVPELSEADMVIFLGDFNYRLDGITYDEARD 785 (842)
Q Consensus 706 ~~Rn~~~~~I~~~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vf~~GDlNyRi~~~~~~~~~~ 785 (842)
++||+||.+|++++.|.+.... .....+.++|+|||||||||||+.++++++++
T Consensus 152 ~~Rn~d~~~I~~~l~f~~~~~~--------------------------~~~~~i~~~d~vfw~GDLNyRi~~~~~~~v~~ 205 (313)
T 3mtc_A 152 ERRNQDYKDICSRMQFCQPDPS--------------------------LPPLTISNHDVILWLGDLNYRIEELDVEKVKK 205 (313)
T ss_dssp HHHHHHHHHHHHHCCBCCSCSS--------------------------SCCBCTTSSSEEEEEEECCCCBCSSCHHHHHH
T ss_pred HHHHHHHHHHHHhcccCCCCCc--------------------------cCCccccCCceEEEeccccccccCCCHHHHHH
Confidence 9999999999999999753221 01123678999999999999998779999999
Q ss_pred HhhhcchHHHHHhhhHHHHhhcCCcccCcccCCCCCCCCcccccCCCCCCccccCC
Q 003171 786 FISQRCFDWLRERDQLRAEMEAGNVFQGMREADIKFPPTYKFEKHLAGLAEACSCL 841 (842)
Q Consensus 786 ~i~~~~~~~L~~~DQL~~~~~~~~~f~gf~E~~I~F~PTYK~~~~~~~~~~Ydt~~ 841 (842)
+|++++|+.|+++|||+++|++|++|.||+|++|+|||||||++|+ +.|||++
T Consensus 206 ~i~~~~~~~Ll~~DQL~~~~~~g~~f~gf~E~~I~F~PTYKyd~~s---~~ydts~ 258 (313)
T 3mtc_A 206 LIEEKDFQMLYAYDQLKIQVAAKTVFEGFTEGELTFQPTYKYDTGS---DDWDTSE 258 (313)
T ss_dssp HHHTTCHHHHHTTBHHHHHHHTTSSCTTCBCCCCCSCCCBCBCTTS---SSBCCST
T ss_pred HHhcCCHHHHHHhHHHHHHHHcCCccCCcccCCcCcCCCccCcCCC---ccccccc
Confidence 9999999999999999999999999999999999999999999998 6899973
|
| >4a9c_A Phosphatidylinositol-3,4,5-trisphosphate 5-phosph; SGC, signalling, structural genomics consortium stockholm, magnesium binding, hydrolase; HET: B5F; 2.10A {Homo sapiens} PDB: 3nr8_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=9.9e-63 Score=529.14 Aligned_cols=240 Identities=29% Similarity=0.504 Sum_probs=203.5
Q ss_pred cccceeEEEEEEEeCCCCCCcccccccccCC-----------CCCceEEEEEeecccCccchhhhhhhhhhcccCCCcch
Q 003171 548 RMENLKILAGTWNVGQGRASQDALISWLGSA-----------ASDVGIVVVGLQEVEMGAGFLAMSAAKETVGLEGSAVG 616 (842)
Q Consensus 548 ~~~~~~i~~~twNv~~~~~~~~~l~~~l~~~-----------~~~~di~viglQE~~~~~~~~~~~~~~~~~~~~~~~~~ 616 (842)
+...++||++|||||++.| +++|.+||.+. ..++|||||||||+.+. .
T Consensus 4 ~~~~i~i~vgTwNv~g~~p-~~~L~~wl~~~~~~~~~~~~~~~~~~DiyviG~QE~~~~--------------------~ 62 (316)
T 4a9c_A 4 EPDMISVFIGTWNMGSVPP-PKNVTSWFTSKGLGKTLDEVTVTIPHDIYVFGTQENSVG--------------------D 62 (316)
T ss_dssp --CEEEEEEEEEECTTSCC-CSCCHHHHTTCSEEECCCTTGGGSCCSEEEEEEESCCSC--------------------H
T ss_pred CCCeEEEEEEEeEcCCcCC-CcchhHhhcccccccCcccccccCCCcEEEEeccccccc--------------------h
Confidence 3456899999999998755 67899999852 13479999999998541 2
Q ss_pred hhHHHHHhhhccC--CCceEEEeeeeceeeEEEEEEeccccCccCceeeceeecccCcccCCCCeeEEEEEEeCeEEEEE
Q 003171 617 HWWLDMIGKILDD--GSTFERVGSRQLAGLLIAVWVRKNLKDYVGDVDVAAVPCGFGRAIGNKGAVGLRVRVYDRIMCFV 694 (842)
Q Consensus 617 ~~w~~~l~~~l~~--~~~y~~v~s~~l~g~~l~vf~r~~~~~~i~~v~~~~v~~G~~~~~gnKG~v~i~~~i~~~~~~Fv 694 (842)
+.|.+.|+++|+. ...|.+|++.+|+||+|+||+|+++.++|++|++++|+||++|.+||||||+|||.+++++||||
T Consensus 63 ~~W~~~i~~~L~~~~~~~Y~~v~s~~L~gi~l~Vfvk~~~~~~I~~v~~~~v~tG~~g~~GNKGaV~ir~~~~~ts~~FV 142 (316)
T 4a9c_A 63 REWLDLLRGGLKELTDLDYRPIAMQSLWNIKVAVLVKPEHENRISHVSTSSVKTGIANTLGNKGAVGVSFMFNGTSFGFV 142 (316)
T ss_dssp HHHHHHHHHHHHHHHSCCCEEEEEEEETTEEEEEEECGGGGGGEEEEEEEEEEEC------CEEEEEEEEEETTEEEEEE
T ss_pred hHHHHHHHHHhccccCCCEEEEEeeeehheeeeeEEeHHHhhhCcccccceeeeeeeEecCCCceEEEEEEECCcEEEEE
Confidence 6799999999964 35799999999999999999999999999999999999999999999999999999999999999
Q ss_pred eecCcCCcchHHHHHHHHHHHHHhcCcCCCCCccchhccCCCceeeecccCCCCCCCccCCCCCcCcccEEEEeccceee
Q 003171 695 NCHFAAHLEAVNRRNADFDHVYRTMTFCRPSNLCSAAAAGASSVVQMLRSTNPLSGLTVEGVPELSEADMVIFLGDFNYR 774 (842)
Q Consensus 695 ~~HLaa~~~~~~~Rn~~~~~I~~~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vf~~GDlNyR 774 (842)
|||||||++++++||+||.+|++++.|...... ......++||||||||||||
T Consensus 143 n~HLaAg~~~~~~Rn~d~~~I~~~l~f~~~~~~---------------------------~~d~~~~~d~vfw~GDLNyR 195 (316)
T 4a9c_A 143 NCHLTSGNEKTARRNQNYLDILRLLSLGDRQLN---------------------------AFDISLRFTHLFWFGDLNYR 195 (316)
T ss_dssp EEECCCSTTCHHHHHHHHHHHHHHCCC----------------------------------CCTTTTSSEEEEEEECCCC
T ss_pred EeccccCchHHHHHHHHHHHHHHhCCCCCCCcC---------------------------ccccCCcCCeEEEcCCccCC
Confidence 999999999999999999999999998743110 00112468999999999999
Q ss_pred ecCCChHHHHHHhhhcchHHHHHhhhHHHHhhcCCcccCcccCCCCCCCCcccccCCCCCCccc
Q 003171 775 LDGITYDEARDFISQRCFDWLRERDQLRAEMEAGNVFQGMREADIKFPPTYKFEKHLAGLAEAC 838 (842)
Q Consensus 775 i~~~~~~~~~~~i~~~~~~~L~~~DQL~~~~~~~~~f~gf~E~~I~F~PTYK~~~~~~~~~~Yd 838 (842)
|+. ++++++++|++++|+.|+++|||++||++|++|.||+|++|+|||||||++|+.+ .||
T Consensus 196 i~~-~~~~v~~~i~~~~~~~Ll~~DQL~~e~~~g~~F~gf~E~~i~F~PTYKy~~~s~~--~y~ 256 (316)
T 4a9c_A 196 LDM-DIQEILNYISRKEFEPLLRVDQLNLEREKHKVFLRFSEEEISFPPTYRYERGSRD--TYA 256 (316)
T ss_dssp BSS-CHHHHHHHHHTTCCHHHHTTBHHHHHHHTTSSSTTCBCCCCCSCCCBCBCTTCSS--CBC
T ss_pred cCC-CHHHHHHHHhcccHHHHhccChHHHHHhcCCcccccccCCcccCCCccccCCCcc--ccc
Confidence 996 9999999999999999999999999999999999999999999999999999953 465
|
| >1i9z_A Synaptojanin, phosphatidylinositol phosphate phosphatase; spsynaptojanin, IPP5C, IP3, IP2,, hydrolase; HET: 2IP; 1.80A {Schizosaccharomyces pombe} SCOP: d.151.1.2 PDB: 1i9y_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.2e-59 Score=510.33 Aligned_cols=268 Identities=29% Similarity=0.487 Sum_probs=236.0
Q ss_pred CCCCcchhhhhhcccccccccccceeEEEEEEEeCCCCCCcccccccccCC-CCCceEEEEEeecc-cCccchhhhhhhh
Q 003171 528 PGPLDSILCKELAGKEFLYTRMENLKILAGTWNVGQGRASQDALISWLGSA-ASDVGIVVVGLQEV-EMGAGFLAMSAAK 605 (842)
Q Consensus 528 ~~~~d~~l~~~l~~r~~~y~~~~~~~i~~~twNv~~~~~~~~~l~~~l~~~-~~~~di~viglQE~-~~~~~~~~~~~~~ 605 (842)
|+|+++++..+|.+++.+|+...+++|+++||||++..| .++|.+||... ..+||||||||||+ +++++.+..
T Consensus 1 ~~p~~~~~~~~l~~r~~e~~~~~~~~i~v~TwNv~g~~~-~~~l~~~L~~~~~~~~DI~viglQEiv~l~~~~~~~---- 75 (347)
T 1i9z_A 1 YDPIHEYVNHELRKRENEFSEHKNVKIFVASYNLNGCSA-TTKLENWLFPENTPLADIYVVGFQEIVQLTPQQVIS---- 75 (347)
T ss_dssp CCHHHHHHHHHHHHTGGGTEEEEEEEEEEEEEECTTCCC-CSCCHHHHSCSSSCCCSEEEEEEECSSCCC-----C----
T ss_pred CCchHHHHHHHHHHHHHhcCCCCCcEEEEEeEecCCCCC-chhHHHHhccccCCCCCEEEEEeEEeecCchhhhcc----
Confidence 578999999999999999999999999999999998877 56799999853 36789999999998 676653321
Q ss_pred hhcccCCCcchhhHHHHHhhhcc----CCCceEEEeeeeceeeEEEEEEeccccCccCceeeceeecccCcccCCCCeeE
Q 003171 606 ETVGLEGSAVGHWWLDMIGKILD----DGSTFERVGSRQLAGLLIAVWVRKNLKDYVGDVDVAAVPCGFGRAIGNKGAVG 681 (842)
Q Consensus 606 ~~~~~~~~~~~~~w~~~l~~~l~----~~~~y~~v~s~~l~g~~l~vf~r~~~~~~i~~v~~~~v~~G~~~~~gnKG~v~ 681 (842)
..+...+.|.+.|.++|+ .+..|.+|.+.+|+|++|+||+|+++.++|++|+++.++||++|.+||||||+
T Consensus 76 -----~~~~~~~~w~~~i~~~L~~~~~~~~~Y~~v~s~~l~g~~L~Vfvr~~~~~~i~~v~~~~v~tG~~g~~gnKGav~ 150 (347)
T 1i9z_A 76 -----ADPAKRREWESCVKRLLNGKCTSGPGYVQLRSGQLVGTALMIFCKESCLPSIKNVEGTVKKTGLGGVSGNKGAVA 150 (347)
T ss_dssp -----CCHHHHHHHHHHHHHHHHHTCCSSCCEEEEEEEEETTEEEEEEEEGGGGGGEEEEEEEEEECCCC----CCEEEE
T ss_pred -----cCchhHHHHHHHHHHHHhhcccCCCceeEEEEeeccceEEEEEEehHhhhhccceeeeeEeccCCCccCCCceEE
Confidence 123345789999999996 35789999999999999999999999999999999999999999999999999
Q ss_pred EEEEEeCeEEEEEeecCcCCcchHHHHHHHHHHHHHhcCcCCCCCccchhccCCCceeeecccCCCCCCCccCCCCCcCc
Q 003171 682 LRVRVYDRIMCFVNCHFAAHLEAVNRRNADFDHVYRTMTFCRPSNLCSAAAAGASSVVQMLRSTNPLSGLTVEGVPELSE 761 (842)
Q Consensus 682 i~~~i~~~~~~Fv~~HLaa~~~~~~~Rn~~~~~I~~~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 761 (842)
+||.+++++||||||||+||++++++||+||+.|++.|.|.+.. .+.+
T Consensus 151 vr~~~~~~~l~fvn~HLaa~~~~~~~R~~d~~~I~~~l~f~~~~--------------------------------~i~~ 198 (347)
T 1i9z_A 151 IRFDYEDTGLCFITSHLAAGYTNYDERDHDYRTIASGLRFRRGR--------------------------------SIFN 198 (347)
T ss_dssp EEEEETTEEEEEEEEECCCCSSCHHHHHHHHHHHHHHCCCGGGC--------------------------------CTTS
T ss_pred EEEEECCeEEEEEEecCCCCCccHHHHHHHHHHHHHhhccCccc--------------------------------cccc
Confidence 99999999999999999999999999999999999999876421 2567
Q ss_pred ccEEEEeccceeeecCCChHHHHHHhhhcchHHHHHhhhHHHHhhcCCcccCcccCCCCCCCCcccccCCCCCCccccCC
Q 003171 762 ADMVIFLGDFNYRLDGITYDEARDFISQRCFDWLRERDQLRAEMEAGNVFQGMREADIKFPPTYKFEKHLAGLAEACSCL 841 (842)
Q Consensus 762 ~d~vf~~GDlNyRi~~~~~~~~~~~i~~~~~~~L~~~DQL~~~~~~~~~f~gf~E~~I~F~PTYK~~~~~~~~~~Ydt~~ 841 (842)
+|++||||||||||+. +.++++++|++++|+.|+++|||+++|++|++|.||.|++|+|+|||||++++ +.|||++
T Consensus 199 ~d~v~~~GDlNyRi~~-~~~~v~~~i~~~~~~~Ll~~DqL~~~~~~~~~f~~f~E~~i~F~PTYK~~~~~---~~yd~s~ 274 (347)
T 1i9z_A 199 HDYVVWFGDFNYRISL-TYEEVVPCIAQGKLSYLFEYDQLNKQMLTGKVFPFFSELPITFPPTYKFDIGT---DIYDTSD 274 (347)
T ss_dssp SSEEEEEEECCCCBSS-CHHHHHHHHHTTCHHHHHTTBHHHHHHHTTSSSTTCBCCCCCSCCCBCBCTTS---SCBCCST
T ss_pred CccEEEecccccccCC-CHHHHHHHHhhccHHHhhcccHHHHHHhcCCcccccccCCCCCCCCcccCCCC---ccccccc
Confidence 8999999999999996 99999999999999999999999999999999999999999999999999998 6899864
|
| >2xsw_A 72 kDa inositol polyphosphate 5-phosphatase; inositol signalling, SGC stockholm, structural genomics CONS hydrolase; 1.90A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.3e-58 Score=503.11 Aligned_cols=252 Identities=23% Similarity=0.374 Sum_probs=219.4
Q ss_pred cccccccceeEEEEEEEeCCCCCCcccccccccCC--CCCceEEEEEeecccCccchhhhhhhhhhcccCCCcchhhHHH
Q 003171 544 FLYTRMENLKILAGTWNVGQGRASQDALISWLGSA--ASDVGIVVVGLQEVEMGAGFLAMSAAKETVGLEGSAVGHWWLD 621 (842)
Q Consensus 544 ~~y~~~~~~~i~~~twNv~~~~~~~~~l~~~l~~~--~~~~di~viglQE~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~ 621 (842)
..|+...+++|+++||||++.++.+++|.+||... ...||||||||||+... .+.|.+
T Consensus 18 ~~~~~~~~l~i~v~TwNv~g~~~~~~~L~~~l~~~~~~~~pDI~viGlQEi~~~--------------------~~~W~~ 77 (357)
T 2xsw_A 18 ARYFPDRNVALFVATWNMQGQKELPPSLDEFLLPAEADYAQDLYVIGVQEGCSD--------------------RREWET 77 (357)
T ss_dssp HHHCTTCEEEEEEEEEECTTCSSCCSCCHHHHSCTTCCSCCSEEEEEEESCCSC--------------------HHHHHH
T ss_pred hhcCCCCCceEEEEEEecCCCCCCcccHHHHhccccccCCCCEEEEEeeeccch--------------------HHHHHH
Confidence 34677788999999999998776678999999642 34689999999998642 267999
Q ss_pred HHhhhccCCCceEEEeeeeceeeEEEEEEeccccCccCceeeceeecccCcccCCCCeeEEEEEEeCeEEEEEeecCcCC
Q 003171 622 MIGKILDDGSTFERVGSRQLAGLLIAVWVRKNLKDYVGDVDVAAVPCGFGRAIGNKGAVGLRVRVYDRIMCFVNCHFAAH 701 (842)
Q Consensus 622 ~l~~~l~~~~~y~~v~s~~l~g~~l~vf~r~~~~~~i~~v~~~~v~~G~~~~~gnKG~v~i~~~i~~~~~~Fv~~HLaa~ 701 (842)
.|.++|+ ..|+++.+.+|+|++|+||+|+++.++|++|+++.++||++|.+||||||+|||.+++++||||||||+||
T Consensus 78 ~l~~~L~--~~Y~~v~s~~l~g~~l~Vfvr~~~~~~i~~v~~~~v~tG~~g~~gNKGav~vr~~~~~t~~~Fvn~HLaa~ 155 (357)
T 2xsw_A 78 RLQETLG--PHYVLLSSAAHGVLYMSLFIRRDLIWFCSEVECSTVTTRIVSQIKTKGALGISFTFFGTSFLFITSHFTSG 155 (357)
T ss_dssp HHHHHHC--TTEEEEEEEEETTEEEEEEEEGGGGGGBBCCEEEEEEEEEEETTEEEEEEEEEEEETTEEEEEEEEECCCS
T ss_pred HHHHHhC--CcccchhhhhhhhEEEEEEEchHHhhcCceeEecccccccccccccccEEEEEEEECCeEEEEEEEccCCC
Confidence 9999995 58999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchHHHHHHHHHHHHHhcCcCCCCCccchhccCCCceeeecccCCCCCCCccCCCCCcCcccEEEEeccceeeecCCChH
Q 003171 702 LEAVNRRNADFDHVYRTMTFCRPSNLCSAAAAGASSVVQMLRSTNPLSGLTVEGVPELSEADMVIFLGDFNYRLDGITYD 781 (842)
Q Consensus 702 ~~~~~~Rn~~~~~I~~~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vf~~GDlNyRi~~~~~~ 781 (842)
++++++||+||..|++.|.|.+.....++ .. ......+.++|+|||||||||||+. +++
T Consensus 156 ~~~~~~Rn~d~~~I~~~l~f~~~~~~~~~----------~~----------~~~~~~~~~~d~vfw~GDlNyRi~~-~~~ 214 (357)
T 2xsw_A 156 DGKVAERLLDYTRTVQALVLPRNVPDTNP----------YR----------SSAADVTTRFDEVFWFGDFNFRLSG-GRT 214 (357)
T ss_dssp TTCHHHHHHHHHHHHHHCCCCSSSCCSSG----------GG----------CBTTBGGGSSSEEEEEEECCCCBSS-CHH
T ss_pred CchHHHHHHHHHHHHHHhccccccccccc----------cc----------ccccccccccceEEEecccCccccc-chH
Confidence 99999999999999999999753221000 00 0011134578999999999999997 889
Q ss_pred HHHHHhh---hcchHHHHHhhhHHHHhhcCCcccCcccCCCCCCCCcccccCCCCCCccccCC
Q 003171 782 EARDFIS---QRCFDWLRERDQLRAEMEAGNVFQGMREADIKFPPTYKFEKHLAGLAEACSCL 841 (842)
Q Consensus 782 ~~~~~i~---~~~~~~L~~~DQL~~~~~~~~~f~gf~E~~I~F~PTYK~~~~~~~~~~Ydt~~ 841 (842)
+++++++ +++|+.|+++|||+++|++|++|.||+|++|+|||||||++++ +.|||+.
T Consensus 215 ~v~~~i~~~~~~~~~~Ll~~DQL~~~~~~g~~F~gf~E~~I~F~PTYKy~~~t---~~Ydts~ 274 (357)
T 2xsw_A 215 VVDALLCQGLVVDVPALLQHDQLIREMRKGSIFKGFQEPDIHFLPSYKFDIGK---DTYDSTS 274 (357)
T ss_dssp HHHHHHC---CCCHHHHHTTBHHHHHHHHTSSSTTCBCCCCCSCCCBCBCTTS---SSBCCST
T ss_pred HHHHHHhhcchhhHHHHHhcChhHHHHhccccccCccccCCCCCCCccccCCC---ccccccC
Confidence 9999986 5789999999999999999999999999999999999999998 6899863
|
| >2imq_X Salivary nitrophorin; ferrous heme, beta-sandwich, transport protein; HET: HEM; 1.30A {Cimex lectularius} SCOP: d.151.1.2 PDB: 1ntf_A* 1y21_A* 1yjh_A* 1si6_X* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.8e-46 Score=400.66 Aligned_cols=231 Identities=18% Similarity=0.299 Sum_probs=201.0
Q ss_pred ccceeEEEEEEEeCCCCCCcccccccccCC-CCCceEEEEEeecccCccchhhhhhhhhhcccCCCcchhhHHHHHhhhc
Q 003171 549 MENLKILAGTWNVGQGRASQDALISWLGSA-ASDVGIVVVGLQEVEMGAGFLAMSAAKETVGLEGSAVGHWWLDMIGKIL 627 (842)
Q Consensus 549 ~~~~~i~~~twNv~~~~~~~~~l~~~l~~~-~~~~di~viglQE~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~l~~~l 627 (842)
..+++|+++||||++..| +++|.+|+... ..+||||||||||+.+.... ....+.|.+.|.+.|
T Consensus 4 ~~~~~i~V~T~Nv~~~~~-~~~l~~wl~~~~~~~pDI~viglQEv~~~~~~--------------~~~~~~w~~~l~~~L 68 (282)
T 2imq_X 4 PAQLSVHTVSWNSGHERA-PTNLEELLGLNSGETPDVIAVAVQGFGFQTDK--------------PQQGPACVKNFQSLL 68 (282)
T ss_dssp CSEEEEEEEEEEEETCCC-CSCCHHHHTCTTSCCCSEEEEEEEESCTTTCT--------------TCCHHHHHHHHHHHH
T ss_pred CCCcEEEEEEEeCCCCcC-chhHHHHhcccccCCCCEEEEEeeeecccccc--------------chhhHHHHHHHHHhc
Confidence 346789999999987766 46789999743 36799999999999864321 123578999999999
Q ss_pred cCCCceEEEee--eeceeeEEEEEEeccccCccCceeeceeecccCcccCCCCeeEEEEEEeCeEEEEEeecCcCCcchH
Q 003171 628 DDGSTFERVGS--RQLAGLLIAVWVRKNLKDYVGDVDVAAVPCGFGRAIGNKGAVGLRVRVYDRIMCFVNCHFAAHLEAV 705 (842)
Q Consensus 628 ~~~~~y~~v~s--~~l~g~~l~vf~r~~~~~~i~~v~~~~v~~G~~~~~gnKG~v~i~~~i~~~~~~Fv~~HLaa~~~~~ 705 (842)
+ ...|.++++ .+|+|++++||+|+++.+.|+++++ +|+.+.+||||||++||.+++++||||||||+|+++++
T Consensus 69 ~-~~~Y~~v~~~~~~~~G~~l~vf~k~~~~~~i~~~~~----~~~~g~~g~kGav~~r~~~~~~~~~fvn~HL~~~~~~~ 143 (282)
T 2imq_X 69 T-SKGYTKLKNTITETMGLTVYCLEKHLDQNTLKNETI----IVTVDDQKKSGGIVTSFTIYNKRFSFTTSRMSDEDVTS 143 (282)
T ss_dssp H-HTTEEEEEEEECSSEEEEEEEEGGGCCTTTCCCEEE----EEECSTTSCSEEEEEEEEETTEEEEEEEEECCTTCCCT
T ss_pred C-CCceEEEEeccCceeEEEEEEEEccccCccceeeee----ccccccccCCceEEEEEEECCEEEEEEEECCCCCCchH
Confidence 6 467999999 8999999999999999888888765 45566789999999999999999999999999999889
Q ss_pred HHHHHHHHHHHHhcCcCCCCCccchhccCCCceeeecccCCCCCCCccCCCCCcCcccEEEEeccceeeecCCChHHHHH
Q 003171 706 NRRNADFDHVYRTMTFCRPSNLCSAAAAGASSVVQMLRSTNPLSGLTVEGVPELSEADMVIFLGDFNYRLDGITYDEARD 785 (842)
Q Consensus 706 ~~Rn~~~~~I~~~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vf~~GDlNyRi~~~~~~~~~~ 785 (842)
++|+++++.|++.+.+ +.+++++||+||||||++. +.+++++
T Consensus 144 ~~R~~~~~~I~~~~~~-------------------------------------~~~~~~vi~~GDfN~r~~~-~~~~~~~ 185 (282)
T 2imq_X 144 TNTKYAYDTRLDYSKK-------------------------------------DDPSDFLFWIGDLNVRVET-NATHAKS 185 (282)
T ss_dssp TSSSSSCCGGGCTTSS-------------------------------------SSCCSEEEEEEECSCCBCS-CHHHHHH
T ss_pred HHHHHHHHHHHHhhhc-------------------------------------cCccceEEEecccccccCC-CHHHHHH
Confidence 9999999999876532 2357899999999999997 8999999
Q ss_pred HhhhcchHHHHHhhhHHHHhhcCCcccCcccCCCCCCCCcccccCCCCCCccccCC
Q 003171 786 FISQRCFDWLRERDQLRAEMEAGNVFQGMREADIKFPPTYKFEKHLAGLAEACSCL 841 (842)
Q Consensus 786 ~i~~~~~~~L~~~DQL~~~~~~~~~f~gf~E~~I~F~PTYK~~~~~~~~~~Ydt~~ 841 (842)
+|+++.|+.|+++|||+++|+ |.+|.||+|++|+|+|||||+.++ +.||+++
T Consensus 186 ~i~~~~~~~l~~~DqL~~~~~-~~~f~~f~e~~i~f~PTYk~~~~~---~~y~~~R 237 (282)
T 2imq_X 186 LVDQNNIDGLMAFDQLKKAKE-QKLFDGWTEPQVTFKPTYKFKPNT---DEYDLSA 237 (282)
T ss_dssp HHHTTCHHHHHTTBTHHHHHH-TTSSTTCBCCCCCSCCCBCBCTTS---SCBCTTS
T ss_pred HHhhccHHHHhhhhHHHHhhc-cccccccccCCcCCCCCccccCCC---ccccccC
Confidence 999999999999999999999 999999999999999999999998 6899876
|
| >1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-34 Score=327.42 Aligned_cols=267 Identities=18% Similarity=0.217 Sum_probs=220.9
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCCC-EEEeeCCCcEEEEeC
Q 003171 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPW 269 (842)
Q Consensus 191 ~~~V~~la~dpdg~~LaSGs~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~ 269 (842)
.++|.|++|+|++++|+||+.||+|++||+.++ +...++++|.++|++|+|+|+|+ |+|||.|++|+|||+
T Consensus 108 ~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~--------~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~ 179 (410)
T 1vyh_C 108 RSPVTRVIFHPVFSVMVSASEDATIKVWDYETG--------DFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDF 179 (410)
T ss_dssp SSCEEEEEECSSSSEEEEEESSSCEEEEETTTC--------CCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEET
T ss_pred CCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCC--------cEEEEEeccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeC
Confidence 889999999999999999999999999999987 56788999999999999999998 789999999999999
Q ss_pred CCccceeecCCCceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcCCCCEEEEeC-CCcEEEEEccCCcEEEEe
Q 003171 270 EAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVF 348 (842)
Q Consensus 270 ~t~~~~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s-~~tI~lWD~~tg~~l~~l 348 (842)
.+.+....+. +| ...+.++++.+++..+++++ |++|++||+.++.++.++
T Consensus 180 ~~~~~~~~~~-------------------~h----------~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~~~ 230 (410)
T 1vyh_C 180 QGFECIRTMH-------------------GH----------DHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTF 230 (410)
T ss_dssp TSSCEEECCC-------------------CC----------SSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEE
T ss_pred CCCceeEEEc-------------------CC----------CCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEE
Confidence 7654322221 22 44678888988888888877 689999999999999999
Q ss_pred ecCCceEeeeecccCCCcccccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEee--c----CccccCCCce
Q 003171 349 NIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAA--K----GGFGDDNRRT 422 (842)
Q Consensus 349 ~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~--~----g~~~~~~~~v 422 (842)
.+|......+. +.+++...+++..++..++|. . ..+..|...|
T Consensus 231 ~~h~~~v~~~~-------------------------------~~~~g~~l~s~s~D~~v~vwd~~~~~~~~~~~~h~~~v 279 (410)
T 1vyh_C 231 TGHREWVRMVR-------------------------------PNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVV 279 (410)
T ss_dssp ECCSSCEEEEE-------------------------------ECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCE
T ss_pred eCCCccEEEEE-------------------------------ECCCCCEEEEEcCCCeEEEEECCCCceeeEecCCCceE
Confidence 87765433322 222333445566666555554 1 2355677888
Q ss_pred EEEEECCC--------------------C-cEEEEeCCCeEEEEcC-CCCeeeeeecCCccEEEEEe--cCCEEEEEecC
Q 003171 423 EALTTSID--------------------G-MIWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQCLCT--FGSQIWVGYMN 478 (842)
Q Consensus 423 ~al~~s~d--------------------g-~l~Sgs~DgtIrlWD~-~g~~l~~l~~H~~~V~sls~--dG~~LasGs~D 478 (842)
.+++++|+ | .+++|+.|++|++||+ +++++.++.+|..+|+++++ +|++|++|+.|
T Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D 359 (410)
T 1vyh_C 280 ECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADD 359 (410)
T ss_dssp EEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSCEEEEETT
T ss_pred EEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCCceEEEEECCCCcEEEEEEcCCCCEEEEEeCC
Confidence 99999885 3 4899999999999999 79999999999999999865 68899999999
Q ss_pred cEEEEEeCC-CcccccccccccCEEEEEe--CCCEEEEEcCCCCeeeccc
Q 003171 479 GIVQVLDLE-GNLLGGWVAHSSPVIKMAV--GAGYIFTLANHGGIRGWNV 525 (842)
Q Consensus 479 gtIrlWD~~-g~~i~~l~gH~~~V~sla~--dg~~l~S~S~DgtIrvWd~ 525 (842)
++|++||+. ++++.++.+|.+.|+++++ ++.+++|+|.|++||+|++
T Consensus 360 ~~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sgs~D~~i~vW~~ 409 (410)
T 1vyh_C 360 KTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWEC 409 (410)
T ss_dssp TEEEEECCTTSCCCEEEECCSSCEEEEEECSSSSCEEEEETTSEEEEEC-
T ss_pred CeEEEEECCCCceEEEEcCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEeC
Confidence 999999997 7889999999999999985 6779999999999999985
|
| >4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-33 Score=312.83 Aligned_cols=287 Identities=14% Similarity=0.061 Sum_probs=206.2
Q ss_pred ceeEEEEecCC--EEEEecCCCEEEEeCCCCccccccccccccCCCCCCCCCCeeeeeecCCCeEEEEEcCCCCEEEEEe
Q 003171 133 CFLRTIVCTEE--QLWAGGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGH 210 (842)
Q Consensus 133 ~~~~~l~~~~~--~l~~~~D~~vrvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~V~~la~dpdg~~LaSGs 210 (842)
..+.++++..+ .|..++|.++|+||......... . .+...........+ ..+|.+++|+|+ +.|++|+
T Consensus 31 ~~v~~~~fs~dG~~l~~~sd~~~r~Wd~~~~~~~~~-----~---~~~~~~~~~~~~~~-~~~v~~~~~s~d-~~l~~~s 100 (344)
T 4gqb_B 31 RQLEAARYRSDGALLLGASSLSGRCWAGSLWLFKDP-----C---AAPNEGFCSAGVQT-EAGVADLTWVGE-RGILVAS 100 (344)
T ss_dssp SEEEEEEECTTSCEEEEEECCSSSCCCEEEEEESSG-----G---GTTCGGGCSEEEEE-SSCEEEEEEETT-TEEEEEE
T ss_pred CCEEEEEECCCCCEEEEEeCCceEEeeceeeeeccc-----c---ccCCcceeeeeecc-CCCEEEEEEeCC-CeEEEEE
Confidence 45778887644 45557799999998421100000 0 00000001111122 568999999998 5788999
Q ss_pred CCCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCCC-EEEeeCCCcEEEEeCCCccceeecCCCceeeeEEE
Q 003171 211 RDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALI 289 (842)
Q Consensus 211 ~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~~t~~~~l~~~~~~~~~~~l~ 289 (842)
.||+||+||+.++. ........+.||.+.|++|+|+|+|+ |+||+.|++||+||+.+++....+
T Consensus 101 ~dg~v~lWd~~~~~----~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~~~~~~~----------- 165 (344)
T 4gqb_B 101 DSGAVELWELDENE----TLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVVLSSY----------- 165 (344)
T ss_dssp TTSEEEEEEECTTS----SCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEE-----------
T ss_pred CCCEEEEEeccCCC----ceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEE-----------
Confidence 99999999999862 11112234569999999999999998 789999999999999775432222
Q ss_pred EeeceeecccceeccceeeeecCCEEEEEEcCCCC-EEEEeC-CCcEEEEEccCCcEEEEeecCCceEeeeecccCCCcc
Q 003171 290 VERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRA-KVWSAG-FLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFA 367 (842)
Q Consensus 290 ~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~-~v~s~s-~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~~ 367 (842)
.+| ...|.++++.+++. .+++++ |++|++||+++++++..+..+
T Consensus 166 --------~~h----------~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~---------------- 211 (344)
T 4gqb_B 166 --------RAH----------AAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCS---------------- 211 (344)
T ss_dssp --------CCC----------SSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC------------------
T ss_pred --------cCc----------CCceEEEEecCCCCCceeeeccccccccccccccceeeeeecc----------------
Confidence 222 45678888877664 566665 689999999998775543211
Q ss_pred cccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEeecCccccCCCceEEEEECCC-Cc-EEEEeCCCeEEEE
Q 003171 368 MEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSID-GM-IWTGGANGLLLQW 445 (842)
Q Consensus 368 ~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~al~~s~d-g~-l~Sgs~DgtIrlW 445 (842)
.+...+.+++++|+ +. +++|+.||+|++|
T Consensus 212 -------------------------------------------------~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~w 242 (344)
T 4gqb_B 212 -------------------------------------------------APGYLPTSLAWHPQQSEVFVFGDENGTVSLV 242 (344)
T ss_dssp ---------------------------------------------------CCCEEEEEECSSCTTEEEEEETTSEEEEE
T ss_pred -------------------------------------------------eeeccceeeeecCCCCcceEEeccCCcEEEE
Confidence 11123456777774 44 6899999999999
Q ss_pred cC-CCCeeeeeecCCccEEEEEe--cC-CEEEEEecCcEEEEEeCCCcccccccccccCEEEEEe--CCC-EEEEEcCCC
Q 003171 446 DP-NGNRLQDFQYLPFAVQCLCT--FG-SQIWVGYMNGIVQVLDLEGNLLGGWVAHSSPVIKMAV--GAG-YIFTLANHG 518 (842)
Q Consensus 446 D~-~g~~l~~l~~H~~~V~sls~--dG-~~LasGs~DgtIrlWD~~g~~i~~l~gH~~~V~sla~--dg~-~l~S~S~Dg 518 (842)
|+ ++++++++.+|...|+++++ +| ++|++|+.|++|+|||++...+..+.+|.+.|++|++ +++ .++|+|.|+
T Consensus 243 d~~~~~~~~~~~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~~~~~H~~~V~~v~~sp~~~~llas~s~D~ 322 (344)
T 4gqb_B 243 DTKSTSCVLSSAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELFRSQAHRDFVRDATWSPLNHSLLTTVGWDH 322 (344)
T ss_dssp ESCC--CCEEEECCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCEEEEECCCSSCEEEEEECSSSTTEEEEEETTS
T ss_pred ECCCCcEEEEEcCCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcEEEEcCCCCCEEEEEEeCCCCeEEEEEcCCC
Confidence 99 78999999999999999875 66 4899999999999999985545567899999999985 554 577999999
Q ss_pred CeeeccccC
Q 003171 519 GIRGWNVTS 527 (842)
Q Consensus 519 tIrvWd~~~ 527 (842)
+|++|++..
T Consensus 323 ~v~~w~v~~ 331 (344)
T 4gqb_B 323 QVVHHVVPT 331 (344)
T ss_dssp CEEEEECCC
T ss_pred eEEEEECCC
Confidence 999999864
|
| >1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5.9e-33 Score=330.27 Aligned_cols=360 Identities=16% Similarity=0.193 Sum_probs=225.3
Q ss_pred eeEEEEecCC---EEEE-ecCCCEEEEeCCCCccccccccccccCCCCCCCCCCeeeeeecCCCeEEEEEcCCCCEEEEE
Q 003171 134 FLRTIVCTEE---QLWA-GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSG 209 (842)
Q Consensus 134 ~~~~l~~~~~---~l~~-~~D~~vrvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~V~~la~dpdg~~LaSG 209 (842)
.+.++++..+ .|.+ +.|++|++||..+..... .+ ..| ..+|.|++|+|+|++|+||
T Consensus 149 ~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~-----------------~l--~~H-~~~V~~v~fspdg~~las~ 208 (611)
T 1nr0_A 149 AMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKS-----------------TF--GEH-TKFVHSVRYNPDGSLFAST 208 (611)
T ss_dssp CEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEE-----------------EE--CCC-SSCEEEEEECTTSSEEEEE
T ss_pred CceEEEECCCCCeEEEEEeCCCeEEEEECCCCeEee-----------------ee--ccc-cCceEEEEECCCCCEEEEE
Confidence 4666666543 3554 569999999986532211 11 123 7899999999999999999
Q ss_pred eCCCcEEEEECCCCccCCCCCcceeEEec-------ccCCcEEEEEEecCCC-EEEeeCCCcEEEEeCCCccceeecCCC
Q 003171 210 HRDGRIMCWKMNARLLDSDDGFGEVLSWQ-------AHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEKALSLKPE 281 (842)
Q Consensus 210 s~DGtIrlWdl~~g~~~~~~~~~~~~~l~-------gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~~t~~~~l~~~~~ 281 (842)
+.|++||+||+.++ +....+. +|.++|++|+|+|+|+ |+|||.|++|||||+.+++....+...
T Consensus 209 s~D~~i~lwd~~~g--------~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~ 280 (611)
T 1nr0_A 209 GGDGTIVLYNGVDG--------TKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVG 280 (611)
T ss_dssp ETTSCEEEEETTTC--------CEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECC
T ss_pred ECCCcEEEEECCCC--------cEeeeeccccccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecCC
Confidence 99999999999887 4556663 8999999999999998 789999999999999875433222110
Q ss_pred ---ce----------eeeEEEEeec--eeecccceeccceeeeecCCEEEEEEcCCCCEEEEeC-CCcEEEEEccCCcEE
Q 003171 282 ---ER----------HTAALIVERS--YIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELL 345 (842)
Q Consensus 282 ---~~----------~~~~l~~~~s--~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s-~~tI~lWD~~tg~~l 345 (842)
.. .+.+...++. +++.... ........+...+.++++++++..|++++ |++|++||+.++++.
T Consensus 281 ~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~-~~~~~~~gh~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~~~~ 359 (611)
T 1nr0_A 281 TRIEDQQLGIIWTKQALVSISANGFINFVNPELG-SIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISN 359 (611)
T ss_dssp SSGGGCEEEEEECSSCEEEEETTCCEEEEETTTT-EEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEE
T ss_pred CCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCC-CcceEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCcee
Confidence 00 0111100110 0111100 00000111356789999999999999887 689999999999887
Q ss_pred EEe-ecCCceEeeeecccCCCc---ccccceEEEEEecCC----------------------------------------
Q 003171 346 KVF-NIDGQIENRVDMSLLPDF---AMEDEFKTKIVTSSK---------------------------------------- 381 (842)
Q Consensus 346 ~~l-~~~~~~~~~~~~s~~~~~---~~~~~~~~~~~s~~~---------------------------------------- 381 (842)
..+ ..|......+.+++.... ..+..++ +|....
T Consensus 360 ~~~~~~h~~~v~~~~~s~~~~l~s~s~d~~v~--~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~ 437 (611)
T 1nr0_A 360 RVFPDVHATMITGIKTTSKGDLFTVSWDDHLK--VVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIY 437 (611)
T ss_dssp ECSSCSCSSCEEEEEECTTSCEEEEETTTEEE--EECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEE
T ss_pred eecccCCcceEEEEEECCCCcEEEEEcCCceE--EeecCCccccccceeeeecCCCCcEEEEeCCCcEEEEEeCceEEEE
Confidence 665 334443344444322110 1111111 221100
Q ss_pred ---------CCccceeeeEeecCcceEEecCCcEEEEee--cCcc-----ccCCCceEEEEECCCCc-EEEEeCCCeEEE
Q 003171 382 ---------KDKAQSSFGFFQRSRNAIMGAADAVRRVAA--KGGF-----GDDNRRTEALTTSIDGM-IWTGGANGLLLQ 444 (842)
Q Consensus 382 ---------~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~--~g~~-----~~~~~~v~al~~s~dg~-l~Sgs~DgtIrl 444 (842)
......++.|.+++..+++|..++..+++. .+.+ ..|...|.+++|+|||+ |++++.|++|++
T Consensus 438 ~~~~~~~~~~~~~v~~va~spdg~~lasgs~D~~v~lwd~~~~~~~~~~~~~h~~~v~~v~fspdg~~las~s~d~~v~~ 517 (611)
T 1nr0_A 438 SHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIP 517 (611)
T ss_dssp ETTEEEEEECSSCEEEEEECTTSCEEEEEETTSEEEEEEEETTEEEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEE
T ss_pred eCCceeeeecCCCceEEEEeCCCCEEEEeCCCCeEEEEEccCCceeeeeccCCCCceEEEEECCCCCEEEEEcCCCCEEE
Confidence 001123455666666667777776666554 1111 24566677777777776 677777777777
Q ss_pred EcC-C-CCeeee--eecCCccEEEEEe--cCCEEEEEecCcEEEEEeCC-Cc-cc-cccccc-ccCEEEEEe--CCCEEE
Q 003171 445 WDP-N-GNRLQD--FQYLPFAVQCLCT--FGSQIWVGYMNGIVQVLDLE-GN-LL-GGWVAH-SSPVIKMAV--GAGYIF 512 (842)
Q Consensus 445 WD~-~-g~~l~~--l~~H~~~V~sls~--dG~~LasGs~DgtIrlWD~~-g~-~i-~~l~gH-~~~V~sla~--dg~~l~ 512 (842)
||+ + ++++.+ +.+|...|+++++ ||++|++|+.|++|+|||++ +. ++ ..+.+| .+.|+++++ +++ |+
T Consensus 518 w~~~~~~~~~~~~~~~~H~~~V~~v~fspdg~~lasgs~D~~v~lW~~~~~~~~~~~~~~~h~~~~v~~v~fs~d~~-l~ 596 (611)
T 1nr0_A 518 YSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETT-IV 596 (611)
T ss_dssp EEGGGTTEESCCCCCCCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCTTSCCEEETTSSTTSCEEEEEEEETTE-EE
T ss_pred EEcCCCCceeeeeeeeecccceeEEEECCCCCEEEEEECCCcEEEEECCCcccccchhhccCcccCeeEEEEcCCCE-EE
Confidence 777 3 454443 2347777777653 67777777777777777775 32 33 566677 677777763 555 77
Q ss_pred EEcCCCCeeeccc
Q 003171 513 TLANHGGIRGWNV 525 (842)
Q Consensus 513 S~S~DgtIrvWd~ 525 (842)
|+|.|++||+|++
T Consensus 597 s~~~D~~i~lW~~ 609 (611)
T 1nr0_A 597 SAGQDSNIKFWNV 609 (611)
T ss_dssp EEETTSCEEEEEC
T ss_pred EecCCCCEEEEec
Confidence 7777777777775
|
| >2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-32 Score=320.97 Aligned_cols=330 Identities=18% Similarity=0.231 Sum_probs=257.5
Q ss_pred eeEEEEecC--CEEEE-ecCCCEEEEeCCCCccccccccccccCCCCCCCCCCeeeeeecCCCeEEEEEcCCCCEEEEEe
Q 003171 134 FLRTIVCTE--EQLWA-GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGH 210 (842)
Q Consensus 134 ~~~~l~~~~--~~l~~-~~D~~vrvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~V~~la~dpdg~~LaSGs 210 (842)
.++.++... ..|.+ +.|+.|++||... .... . ...+ ..+|.+++++|++++|++|+
T Consensus 223 ~v~~~~~s~dg~~l~~~~~d~~i~~w~~~~-~~~~-----------------~--~~~~-~~~v~~v~~~~d~~~l~~~~ 281 (577)
T 2ymu_A 223 SVRGVAFSPDGQTIASASDDKTVKLWNRNG-QLLQ-----------------T--LTGH-SSSVNGVAFRPDGQTIASAS 281 (577)
T ss_dssp CEEEEEECTTSSCEEEEETTSCEEEECTTS-CEEE-----------------E--ECCC-SSCEEEEEECTTSSEEEEEE
T ss_pred CEEEEEECCCCCEEEEEeCCCEEEEEeCCC-CEEE-----------------E--EecC-CCCEEEEEEcCCCCEEEEEe
Confidence 456666653 34554 5689999999642 1110 1 1123 77899999999999999999
Q ss_pred CCCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCCC-EEEeeCCCcEEEEeCCCccceeecCCCceeeeEEE
Q 003171 211 RDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALI 289 (842)
Q Consensus 211 ~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~~t~~~~l~~~~~~~~~~~l~ 289 (842)
.|++|++|+... +....+.+|.+.|++++|+|+++ |++++.|++|++||..+... ..+
T Consensus 282 ~d~~i~~w~~~~---------~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~~~~~-~~~----------- 340 (577)
T 2ymu_A 282 DDKTVKLWNRNG---------QLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQHL-QTL----------- 340 (577)
T ss_dssp TTSCEEEEETTS---------CEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTSCEE-EEE-----------
T ss_pred CCCEEEEEeCCC---------cEEEEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCee-EEE-----------
Confidence 999999999765 56778899999999999999998 78999999999999854211 111
Q ss_pred EeeceeecccceeccceeeeecCCEEEEEEcCCCCEEEEeC-CCcEEEEEccCCcEEEEeecCCceEeeeecccCCCccc
Q 003171 290 VERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAM 368 (842)
Q Consensus 290 ~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s-~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~~~ 368 (842)
.++ ...+.++++++++..+++++ +++|++||. +++++..+..|...+..+.+++.....+
T Consensus 341 --------~~~----------~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~dg~~l~ 401 (577)
T 2ymu_A 341 --------TGH----------SSSVWGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIA 401 (577)
T ss_dssp --------CCC----------SSCEEEEEECTTSSEEEEEETTSEEEEEET-TCCEEEEEECCSSCEEEEEECTTSSCEE
T ss_pred --------eCC----------CCCEEEEEECCCCCEEEEEeCCCEEEEEcC-CCCEEEEecCCCCCeEEEEECCCCCEEE
Confidence 111 44677888888888888876 578999995 6788888888777666777776544322
Q ss_pred --ccceEEEEEecCC--------CCccceeeeEeecCcceEEecCCcEEEEee-cC----ccccCCCceEEEEECCCCc-
Q 003171 369 --EDEFKTKIVTSSK--------KDKAQSSFGFFQRSRNAIMGAADAVRRVAA-KG----GFGDDNRRTEALTTSIDGM- 432 (842)
Q Consensus 369 --~~~~~~~~~s~~~--------~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~-~g----~~~~~~~~v~al~~s~dg~- 432 (842)
..+..+++|.... ....+..+.|.+++...+++..++..+++. .+ .+..|...|.+++|+|||+
T Consensus 402 ~~~~d~~v~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~v~~~~~spd~~~ 481 (577)
T 2ymu_A 402 SASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQT 481 (577)
T ss_dssp EEETTSEEEEECTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTSCEEEEEECCSSCEEEEEECTTSCE
T ss_pred EEeCCCEEEEEeCCCCEEEEecCCCCCeEEEEECCCCCEEEEEcCCCEEEEEECCCCEEEEEcCCCCCEEEEEEcCCCCE
Confidence 1222233443211 122334677888888888888888777765 22 3456788999999999998
Q ss_pred EEEEeCCCeEEEEcCCCCeeeeeecCCccEEEEEe--cCCEEEEEecCcEEEEEeCCCcccccccccccCEEEEE--eCC
Q 003171 433 IWTGGANGLLLQWDPNGNRLQDFQYLPFAVQCLCT--FGSQIWVGYMNGIVQVLDLEGNLLGGWVAHSSPVIKMA--VGA 508 (842)
Q Consensus 433 l~Sgs~DgtIrlWD~~g~~l~~l~~H~~~V~sls~--dG~~LasGs~DgtIrlWD~~g~~i~~l~gH~~~V~sla--~dg 508 (842)
|++++.|++|++||.+|++++++.+|...|+++++ +|++|++|+.||+|+|||.+++++.++.+|.+.|++|+ +|+
T Consensus 482 las~~~d~~i~iw~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~v~lwd~~~~~~~~~~~h~~~v~~~~fs~dg 561 (577)
T 2ymu_A 482 IASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDG 561 (577)
T ss_dssp EEEEETTSEEEEEETTSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECTTSCEEEEEECCSSCEEEEEECTTS
T ss_pred EEEEeCCCEEEEEcCCCCEEEEEeCCCCCEEEEEEcCCCCEEEEEECcCEEEEEeCCCCEEEEEcCCCCCEEEEEEcCCC
Confidence 78999999999999999999999999999999864 79999999999999999999999999999999999998 488
Q ss_pred CEEEEEcCCCCeeecc
Q 003171 509 GYIFTLANHGGIRGWN 524 (842)
Q Consensus 509 ~~l~S~S~DgtIrvWd 524 (842)
++|+|+|.|++|++||
T Consensus 562 ~~l~s~~~D~~i~~Wd 577 (577)
T 2ymu_A 562 QTIASASSDKTVKLWN 577 (577)
T ss_dssp SCEEEEETTSCEEEEC
T ss_pred CEEEEEeCCCEEEEeC
Confidence 9999999999999997
|
| >3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.1e-33 Score=304.88 Aligned_cols=260 Identities=16% Similarity=0.152 Sum_probs=214.9
Q ss_pred EEEE-ecCCCEEEEeCCCCccccccccccccCCCCCCCCCCeeeeeecCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 003171 144 QLWA-GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGHRDGRIMCWKMNA 222 (842)
Q Consensus 144 ~l~~-~~D~~vrvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~V~~la~dpdg~~LaSGs~DGtIrlWdl~~ 222 (842)
.|.+ +.|++|||||+.+.... . .+....| ..+|.|+++++++.+++||+.|++|++||+.+
T Consensus 50 ~l~tgs~D~~v~vW~~~~~~~~-~----------------~~~l~gh-~~~v~~~~~~~~~~~l~s~s~D~~i~lWd~~~ 111 (321)
T 3ow8_A 50 TVVTGSLDDLVKVWKWRDERLD-L----------------QWSLEGH-QLGVVSVDISHTLPIAASSSLDAHIRLWDLEN 111 (321)
T ss_dssp EEEEEETTSCEEEEEEETTEEE-E----------------EEEECCC-SSCEEEEEECSSSSEEEEEETTSEEEEEETTT
T ss_pred EEEEEcCCCCEEEEECCCCCee-e----------------eeeeccC-CCCEEEEEECCCCCEEEEEeCCCcEEEEECCC
Confidence 4555 56999999998643211 0 0111223 78999999999999999999999999999998
Q ss_pred CccCCCCCcceeEEecccCCcEEEEEEecCCC-EEEeeCCCcEEEEeCCCccceeecCCCceeeeEEEEeeceeecccce
Q 003171 223 RLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHL 301 (842)
Q Consensus 223 g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~~t~~~~l~~~~~~~~~~~l~~~~s~~~l~~~~ 301 (842)
+ +++..+.+|...|.+++|+|+|+ |++|+.|++|++|++.++.....+.. +
T Consensus 112 ~--------~~~~~~~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~~~~~~~~-------------------~- 163 (321)
T 3ow8_A 112 G--------KQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDT-------------------R- 163 (321)
T ss_dssp T--------EEEEEEECCTTCCCCEEECTTSSEEEEECTTSEEEEEETTTCSEEEEEEC-------------------S-
T ss_pred C--------CEEEEEeCCCccEEEEEECCCCCEEEEEcCCCcEEEEEcCCCceeEEecC-------------------C-
Confidence 7 67788899999999999999998 78999999999999977543322211 1
Q ss_pred eccceeeeecCCEEEEEEcCCCCEEEEeC-CCcEEEEEccCCcEEEEeecCCceEeeeecccCCCcccccceEEEEEecC
Q 003171 302 SVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSS 380 (842)
Q Consensus 302 ~~~~~~~~~s~~v~~las~~~~~~v~s~s-~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~ 380 (842)
...+.++++++++..+++++ +++|++||+++++++.++.+|
T Consensus 164 ---------~~~v~~~~~spdg~~lasg~~dg~i~iwd~~~~~~~~~~~~h----------------------------- 205 (321)
T 3ow8_A 164 ---------GKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGH----------------------------- 205 (321)
T ss_dssp ---------SSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCC-----------------------------
T ss_pred ---------CceEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEccc-----------------------------
Confidence 23577888889898888877 679999999998876655322
Q ss_pred CCCccceeeeEeecCcceEEecCCcEEEEeecCccccCCCceEEEEECCCCc-EEEEeCCCeEEEEcC-CCCeeeeeecC
Q 003171 381 KKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGM-IWTGGANGLLLQWDP-NGNRLQDFQYL 458 (842)
Q Consensus 381 ~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~al~~s~dg~-l~Sgs~DgtIrlWD~-~g~~l~~l~~H 458 (842)
...|.+++|+|++. |++|+.|++|++||+ +++++.++.+|
T Consensus 206 --------------------------------------~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h 247 (321)
T 3ow8_A 206 --------------------------------------AMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGH 247 (321)
T ss_dssp --------------------------------------SSCCCEEEECTTSCEEEEECTTSCEEEEETTTCCEEEEECCC
T ss_pred --------------------------------------CCceeEEEEcCCCCEEEEEcCCCeEEEEECCCcceeEEEcCC
Confidence 23355788999987 789999999999999 68899999999
Q ss_pred CccEEEEEe--cCCEEEEEecCcEEEEEeCC-CcccccccccccCEEEEEe--CCCEEEEEcCCCCeeeccc
Q 003171 459 PFAVQCLCT--FGSQIWVGYMNGIVQVLDLE-GNLLGGWVAHSSPVIKMAV--GAGYIFTLANHGGIRGWNV 525 (842)
Q Consensus 459 ~~~V~sls~--dG~~LasGs~DgtIrlWD~~-g~~i~~l~gH~~~V~sla~--dg~~l~S~S~DgtIrvWd~ 525 (842)
...|.++++ +|++|++|+.|++|+|||+. ++++.++.+|.+.|+++++ +++.|+|++.|++|++||+
T Consensus 248 ~~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~s~~~d~~i~vwd~ 319 (321)
T 3ow8_A 248 ASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQDQVWGVKYNGNGSKIVSVGDDQEIHIYDC 319 (321)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCCEEEEEC
T ss_pred CCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCEEEEEEcCCCCcEEEEEECCCCCEEEEEeCCCeEEEEeC
Confidence 999999865 78999999999999999997 7889999999999999985 7889999999999999995
|
| >1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.7e-32 Score=322.47 Aligned_cols=360 Identities=13% Similarity=0.110 Sum_probs=217.5
Q ss_pred cCCEEEEecCCCEEEEeCCCCccccccccccccCCCCCCCCCCeeeeeecCCCeEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 003171 141 TEEQLWAGGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGHRDGRIMCWKM 220 (842)
Q Consensus 141 ~~~~l~~~~D~~vrvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~V~~la~dpdg~~LaSGs~DGtIrlWdl 220 (842)
+++.|..+.+++|++||+.+..... .+ ..| ..+|.|++|+|+|++||||+.||+||+||+
T Consensus 29 dg~~l~~~~~~~v~l~~~~~~~~~~-----------------~~--~~h-~~~v~~~~~spdg~~lasg~~d~~v~lWd~ 88 (611)
T 1nr0_A 29 AGDKIQYCNGTSVYTVPVGSLTDTE-----------------IY--TEH-SHQTTVAKTSPSGYYCASGDVHGNVRIWDT 88 (611)
T ss_dssp TSSEEEEEETTEEEEEETTCSSCCE-----------------EE--CCC-SSCEEEEEECTTSSEEEEEETTSEEEEEES
T ss_pred CCCEEEeCCCCEEEEecCCCcccCe-----------------Ee--cCC-CCceEEEEECCCCcEEEEEeCCCCEEEeEC
Confidence 3556666778899999997543221 12 234 779999999999999999999999999999
Q ss_pred CCCccCCCCCcceeEEecccCCcEEEEEEecCCC-EEEeeCC----CcEEEEeCCCcccee----------ecCCCce-e
Q 003171 221 NARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEG----GGIKIWPWEAIEKAL----------SLKPEER-H 284 (842)
Q Consensus 221 ~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~D----gtIrvWd~~t~~~~l----------~~~~~~~-~ 284 (842)
.++. ......+.+|.++|.+|+|+|+|+ |++++.| ++|++||.......+ .+.+... .
T Consensus 89 ~~~~------~~~~~~~~~~~~~v~~v~fs~dg~~l~~~~~~~~~~~~v~~wd~~~~~~~l~gh~~~v~~v~f~p~~~~~ 162 (611)
T 1nr0_A 89 TQTT------HILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFR 162 (611)
T ss_dssp SSTT------CCEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTTCCBCBCCCCCSSCEEEEEECSSSSCE
T ss_pred CCCc------ceeeEeecccCCceEEEEECCCCCEEEEEECCCCceeEEEEeeCCCCcceecCCCCCceEEEECCCCCeE
Confidence 7542 023456778888888888888887 5666654 367777643211111 1111111 1
Q ss_pred eeEEEEeece--eecccceeccceeeeecCCEEEEEEcCCCCEEEEeC-CCcEEEEEccCCcEEEEee-------cCCce
Q 003171 285 TAALIVERSY--IDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVFN-------IDGQI 354 (842)
Q Consensus 285 ~~~l~~~~s~--~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s-~~tI~lWD~~tg~~l~~l~-------~~~~~ 354 (842)
+.+...++.. ++.... ........+...|.++++++++..+++++ |++|+|||+.+++++.++. +|...
T Consensus 163 l~s~s~D~~v~lwd~~~~-~~~~~l~~H~~~V~~v~fspdg~~las~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~ 241 (611)
T 1nr0_A 163 IISGSDDNTVAIFEGPPF-KFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGS 241 (611)
T ss_dssp EEEEETTSCEEEEETTTB-EEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSC
T ss_pred EEEEeCCCeEEEEECCCC-eEeeeeccccCceEEEEECCCCCEEEEEECCCcEEEEECCCCcEeeeeccccccccccCCC
Confidence 1111111111 111100 00000111255789999999999988877 6899999999999998884 56665
Q ss_pred EeeeecccCCCcc----cccceEEEEEecC--------------------------------------------------
Q 003171 355 ENRVDMSLLPDFA----MEDEFKTKIVTSS-------------------------------------------------- 380 (842)
Q Consensus 355 ~~~~~~s~~~~~~----~~~~~~~~~~s~~-------------------------------------------------- 380 (842)
+..+.+++..... .+..+++|.+...
T Consensus 242 V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~ 321 (611)
T 1nr0_A 242 VFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRY 321 (611)
T ss_dssp EEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEEC
T ss_pred EEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEc
Confidence 6677776654322 1223332211100
Q ss_pred CCCccceeeeEeecCcceEEecCCcEEEEee--cCc----c-ccC-----------------------------------
Q 003171 381 KKDKAQSSFGFFQRSRNAIMGAADAVRRVAA--KGG----F-GDD----------------------------------- 418 (842)
Q Consensus 381 ~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~--~g~----~-~~~----------------------------------- 418 (842)
.....+..+.|.+++..++++..++..++|. .+. + ..|
T Consensus 322 gh~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~~~~~~~~~~h~~~v~~~~~s~~~~l~s~s~d~~v~~w~~~~~~~~ 401 (611)
T 1nr0_A 322 GHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVD 401 (611)
T ss_dssp CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCEEEEETTTEEEEECSSSSSSC
T ss_pred CCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeecccCCcceEEEEEECCCCcEEEEEcCCceEEeecCCcccc
Confidence 0111223455666666666666666555553 110 0 001
Q ss_pred ----------------------------------------------CCceEEEEECCCCc-EEEEeCCCeEEEEcCCC-C
Q 003171 419 ----------------------------------------------NRRTEALTTSIDGM-IWTGGANGLLLQWDPNG-N 450 (842)
Q Consensus 419 ----------------------------------------------~~~v~al~~s~dg~-l~Sgs~DgtIrlWD~~g-~ 450 (842)
...+.+++++|||+ |++|+.|++|++||+.+ +
T Consensus 402 ~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~va~spdg~~lasgs~D~~v~lwd~~~~~ 481 (611)
T 1nr0_A 402 SSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGAS 481 (611)
T ss_dssp TTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEECTTSCEEEEEETTSEEEEEEEETTE
T ss_pred ccceeeeecCCCCcEEEEeCCCcEEEEEeCceEEEEeCCceeeeecCCCceEEEEeCCCCEEEEeCCCCeEEEEEccCCc
Confidence 12345667777776 67777777777777733 2
Q ss_pred e--eeeeecCCccEEEEEe--cCCEEEEEecCcEEEEEeCC--Cccccc--ccccccCEEEEEe--CCCEEEEEcCCCCe
Q 003171 451 R--LQDFQYLPFAVQCLCT--FGSQIWVGYMNGIVQVLDLE--GNLLGG--WVAHSSPVIKMAV--GAGYIFTLANHGGI 520 (842)
Q Consensus 451 ~--l~~l~~H~~~V~sls~--dG~~LasGs~DgtIrlWD~~--g~~i~~--l~gH~~~V~sla~--dg~~l~S~S~DgtI 520 (842)
. +++ .+|...|+++++ +|++|++|+.|++|++||+. ++++.. +.+|.+.|+++++ |+++|+|+|.|++|
T Consensus 482 ~~~~~~-~~h~~~v~~v~fspdg~~las~s~d~~v~~w~~~~~~~~~~~~~~~~H~~~V~~v~fspdg~~lasgs~D~~v 560 (611)
T 1nr0_A 482 VSEVKT-IVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSV 560 (611)
T ss_dssp EEEEEE-EECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSSCEEEEEECTTSSEEEEEETTSCE
T ss_pred eeeeec-cCCCCceEEEEECCCCCEEEEEcCCCCEEEEEcCCCCceeeeeeeeecccceeEEEECCCCCEEEEEECCCcE
Confidence 2 233 567777777654 67777777777777777765 344433 4457777777763 66777777777777
Q ss_pred eeccccCC
Q 003171 521 RGWNVTSP 528 (842)
Q Consensus 521 rvWd~~~~ 528 (842)
|+|++..+
T Consensus 561 ~lW~~~~~ 568 (611)
T 1nr0_A 561 IVWNMNKP 568 (611)
T ss_dssp EEEETTCT
T ss_pred EEEECCCc
Confidence 77776543
|
| >1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-32 Score=307.40 Aligned_cols=292 Identities=18% Similarity=0.210 Sum_probs=217.9
Q ss_pred eeEEEEec--CCEEEEecCCCEEEEeCCCCccccccccccccCCCCC-CCCCCeee--eeecCCCeEEEEEcCCCCEEEE
Q 003171 134 FLRTIVCT--EEQLWAGGENGLRVWNLKELYDESESDSVSVSKSKGE-DGTAPFKE--SVKGVSSVMCMVGDEASGVVWS 208 (842)
Q Consensus 134 ~~~~l~~~--~~~l~~~~D~~vrvWdl~~~~~~~~~~~~~~~~~~~~-~~~~~~~~--~~~g~~~V~~la~dpdg~~LaS 208 (842)
.+.+++.. +..|.++.++++++|++.++..... +...... .....+.. ...+...|.|++|+|+|++|++
T Consensus 66 ~V~~v~fspdg~~la~g~~~~v~i~~~~~g~~~~~-----l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~s 140 (393)
T 1erj_A 66 VVCCVKFSNDGEYLATGCNKTTQVYRVSDGSLVAR-----LSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLAT 140 (393)
T ss_dssp CCCEEEECTTSSEEEEECBSCEEEEETTTCCEEEE-----ECC-----------------CCCCBEEEEEECTTSSEEEE
T ss_pred EEEEEEECCCCCEEEEEcCCcEEEEEecCCCEEEE-----ecCccccccccccccccccCCCceeEEEEEECCCCCEEEE
Confidence 45566655 4466668899999999976543211 0000000 00000000 0001335999999999999999
Q ss_pred EeCCCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCCC-EEEeeCCCcEEEEeCCCccceeecCCCceeeeE
Q 003171 209 GHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEKALSLKPEERHTAA 287 (842)
Q Consensus 209 Gs~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~~t~~~~l~~~~~~~~~~~ 287 (842)
|+.||+|++||+.++ +....+.+|.+.|++++|+|+|+ |+||+.|++|++||+.+++....+.
T Consensus 141 ~~~d~~i~iwd~~~~--------~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~-------- 204 (393)
T 1erj_A 141 GAEDRLIRIWDIENR--------KIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLS-------- 204 (393)
T ss_dssp EETTSCEEEEETTTT--------EEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE--------
T ss_pred EcCCCeEEEEECCCC--------cEEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCeeEEEEE--------
Confidence 999999999999987 67788999999999999999997 7899999999999997654322111
Q ss_pred EEEeeceeecccceeccceeeeecCCEEEEEEcC-CCCEEEEeC-CCcEEEEEccCCcEEEEeecCCceEeeeecccCCC
Q 003171 288 LIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDH-SRAKVWSAG-FLSFALWDARTRELLKVFNIDGQIENRVDMSLLPD 365 (842)
Q Consensus 288 l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~-~~~~v~s~s-~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~ 365 (842)
....+..+++.+ ++..+++++ +++|++||+.+++++..+.....
T Consensus 205 ----------------------~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~------------ 250 (393)
T 1erj_A 205 ----------------------IEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENE------------ 250 (393)
T ss_dssp ----------------------CSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC----------------
T ss_pred ----------------------cCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeeccccc------------
Confidence 023466677776 667777776 67999999999887655421100
Q ss_pred cccccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEeecCccccCCCceEEEEECCCCc-EEEEeCCCeEEE
Q 003171 366 FAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGM-IWTGGANGLLLQ 444 (842)
Q Consensus 366 ~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~al~~s~dg~-l~Sgs~DgtIrl 444 (842)
...+|...|.+++|+|+|. |++|+.|++|++
T Consensus 251 ------------------------------------------------~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~ 282 (393)
T 1erj_A 251 ------------------------------------------------SGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKL 282 (393)
T ss_dssp --------------------------------------------------CCCSSCEEEEEECTTSSEEEEEETTSEEEE
T ss_pred ------------------------------------------------CCCCCCCCEEEEEECCCCCEEEEEeCCCEEEE
Confidence 0124556788899999997 899999999999
Q ss_pred EcC-C------------CCeeeeeecCCccEEEEEe--cCCEEEEEecCcEEEEEeCC-CcccccccccccCEEEEEe--
Q 003171 445 WDP-N------------GNRLQDFQYLPFAVQCLCT--FGSQIWVGYMNGIVQVLDLE-GNLLGGWVAHSSPVIKMAV-- 506 (842)
Q Consensus 445 WD~-~------------g~~l~~l~~H~~~V~sls~--dG~~LasGs~DgtIrlWD~~-g~~i~~l~gH~~~V~sla~-- 506 (842)
||+ + +.+..++.+|...|.++++ +|++|++|+.|++|++||++ ++++..+.+|.+.|.++++
T Consensus 283 wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~~~~l~~h~~~v~~v~~~~ 362 (393)
T 1erj_A 283 WNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVAN 362 (393)
T ss_dssp EEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECS
T ss_pred EECCCCCCcccccCCCCCcceEEEecccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEECCCCCCEEEEEecC
Confidence 998 3 3466788899999999865 68899999999999999987 7889999999999999984
Q ss_pred ------CCCEEEEEcCCCCeeeccccCC
Q 003171 507 ------GAGYIFTLANHGGIRGWNVTSP 528 (842)
Q Consensus 507 ------dg~~l~S~S~DgtIrvWd~~~~ 528 (842)
+++.++|+|.|++||+|++...
T Consensus 363 ~~~~~p~~~~l~sgs~Dg~i~iW~~~~~ 390 (393)
T 1erj_A 363 GSSLGPEYNVFATGSGDCKARIWKYKKI 390 (393)
T ss_dssp SCTTCTTCEEEEEEETTSEEEEEEEEEC
T ss_pred CcCcCCCCCEEEEECCCCcEEECccccc
Confidence 3578999999999999997643
|
| >4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-32 Score=305.30 Aligned_cols=285 Identities=15% Similarity=0.118 Sum_probs=206.7
Q ss_pred CCCeEEEEEcCCCCEEEEEeC------CCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCCCEEEeeCCCcE
Q 003171 191 VSSVMCMVGDEASGVVWSGHR------DGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGDLWSGSEGGGI 264 (842)
Q Consensus 191 ~~~V~~la~dpdg~~LaSGs~------DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~L~SgS~DgtI 264 (842)
...|.|++|+|||++|+||+. ||+|++|+..++. ..........+|...|++|+|+|++++++++.||+|
T Consensus 42 ~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~----~~~~~~~~~~~~~~~V~~~~~s~d~~~l~~s~dg~v 117 (357)
T 4g56_B 42 EVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGA----PNESLCTAGVQTEAGVTDVAWVSEKGILVASDSGAV 117 (357)
T ss_dssp CSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC-------CGGGCSEEEECSSCEEEEEEETTTEEEEEETTSCE
T ss_pred cCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCC----cceeEecccCCCCCCEEEEEEcCCCCEEEEECCCEE
Confidence 678999999999999999998 7889999987752 122234456789999999999999999999999999
Q ss_pred EEEeCCCccceeecCCCceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcCCCCEEEEeC-CCcEEEEEccCCc
Q 003171 265 KIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRE 343 (842)
Q Consensus 265 rvWd~~t~~~~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s-~~tI~lWD~~tg~ 343 (842)
||||+.+++....... ...+| ...|.++++++++..|++++ +++|++||+.+++
T Consensus 118 ~lWd~~~~~~~~~~~~---------------~~~~h----------~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~~ 172 (357)
T 4g56_B 118 ELWEILEKESLLVNKF---------------AKYEH----------DDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKA 172 (357)
T ss_dssp EEC--------CCCCE---------------EECCC----------SSCEEEEEECSSSSEEEEEETTSCEEEEETTTTE
T ss_pred EEeeccccceeEEEee---------------ccCCC----------CCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCc
Confidence 9999976542211100 00112 45688999999999888877 6799999999999
Q ss_pred EEEEeecCCceEeeeecccCCCcccccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEee--cC------cc
Q 003171 344 LLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAA--KG------GF 415 (842)
Q Consensus 344 ~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~--~g------~~ 415 (842)
++..+..|...+..+.+++... ...+.+..++..+++. .+ .+
T Consensus 173 ~~~~~~~h~~~v~~v~~s~~~~------------------------------~~~~s~~~dg~v~~wd~~~~~~~~~~~~ 222 (357)
T 4g56_B 173 VLKSYNAHSSEVNCVAACPGKD------------------------------TIFLSCGEDGRILLWDTRKPKPATRIDF 222 (357)
T ss_dssp EEEEECCCSSCEEEEEECTTCS------------------------------SCEEEEETTSCEEECCTTSSSCBCBCCC
T ss_pred EEEEEcCCCCCEEEEEEccCCC------------------------------ceeeeeccCCceEEEECCCCceeeeeee
Confidence 9999887765444444333211 1223444555555543 11 12
Q ss_pred ccCCCceEEEEECCCC-c-EEEEeCCCeEEEEcC-CCCeeeeeecCCccEEEEEe--cC-CEEEEEecCcEEEEEeCC-C
Q 003171 416 GDDNRRTEALTTSIDG-M-IWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQCLCT--FG-SQIWVGYMNGIVQVLDLE-G 488 (842)
Q Consensus 416 ~~~~~~v~al~~s~dg-~-l~Sgs~DgtIrlWD~-~g~~l~~l~~H~~~V~sls~--dG-~~LasGs~DgtIrlWD~~-g 488 (842)
..+...+.+++++|++ . +++|+.|++|++||+ ++++++++.+|...|+++++ +| ++|++|+.|++|+|||++ +
T Consensus 223 ~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~ 302 (357)
T 4g56_B 223 CASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQTSAVHSQNITGLAYSYHSSPFLASISEDCTVAVLDADFS 302 (357)
T ss_dssp TTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGGCEEECCCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTSC
T ss_pred ccccccccchhhhhcccceEEEeecccceeEEECCCCcEeEEEeccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCC
Confidence 2355678899999975 3 789999999999999 78999999999999999875 56 589999999999999998 5
Q ss_pred cccccccccccCEEEEEe---CCCEEEEEcCCCCeeeccccCCCCCcchh
Q 003171 489 NLLGGWVAHSSPVIKMAV---GAGYIFTLANHGGIRGWNVTSPGPLDSIL 535 (842)
Q Consensus 489 ~~i~~l~gH~~~V~sla~---dg~~l~S~S~DgtIrvWd~~~~~~~d~~l 535 (842)
++++. .+|.+.|++|++ |+++|+|+|.|++|++|++.+......++
T Consensus 303 ~~~~~-~~H~~~V~~vafsP~d~~~l~s~s~Dg~v~iW~~~~~~~~~~~i 351 (357)
T 4g56_B 303 EVFRD-LSHRDFVTGVAWSPLDHSKFTTVGWDHKVLHHHLPSEGRTENLI 351 (357)
T ss_dssp EEEEE-CCCSSCEEEEEECSSSTTEEEEEETTSCEEEEECC---------
T ss_pred cEeEE-CCCCCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccccc
Confidence 55554 489999999985 67899999999999999987655544433
|
| >1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.5e-32 Score=297.59 Aligned_cols=270 Identities=18% Similarity=0.214 Sum_probs=212.4
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCCC-EEEeeCCCcEEEEeC
Q 003171 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPW 269 (842)
Q Consensus 191 ~~~V~~la~dpdg~~LaSGs~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~ 269 (842)
.++|.|++|+|++++|+||+.||+|++||+.++ .....+.+|...|.+++|+|+|+ |++|+.|++|++|++
T Consensus 55 ~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~--------~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iw~~ 126 (340)
T 1got_B 55 LAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTT--------NKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNL 126 (340)
T ss_dssp SSCEEEEEECTTSSEEEEEETTTEEEEEETTTC--------CEEEEEECSSSCEEEEEECTTSSEEEEEETTCEEEEEET
T ss_pred CCceEEEEECCCCCEEEEEeCCCcEEEEECCCC--------CcceEeecCCccEEEEEECCCCCEEEEEeCCCeEEEEEC
Confidence 779999999999999999999999999999887 67788899999999999999998 789999999999999
Q ss_pred CCccceeecCCCceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcCCCCEEEEeCCCcEEEEEccCCcEEEEee
Q 003171 270 EAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGFLSFALWDARTRELLKVFN 349 (842)
Q Consensus 270 ~t~~~~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s~~tI~lWD~~tg~~l~~l~ 349 (842)
.+.+..... .. .+.+| ...+.++.+.+++..+.++.+++|++||+.+++++.++.
T Consensus 127 ~~~~~~~~~------~~---------~~~~h----------~~~v~~~~~~~~~~l~s~s~d~~i~~wd~~~~~~~~~~~ 181 (340)
T 1got_B 127 KTREGNVRV------SR---------ELAGH----------TGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFT 181 (340)
T ss_dssp TTCSBSCEE------EE---------EEECC----------SSCEEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEEC
T ss_pred ccCCCccee------EE---------EecCC----------CccEEEEEECCCCcEEEEECCCcEEEEECCCCcEEEEEc
Confidence 764321110 00 01122 345666777665554444557899999999999988887
Q ss_pred cCCceEeeeecccCCCcccccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEee--c----CccccCCCceE
Q 003171 350 IDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAA--K----GGFGDDNRRTE 423 (842)
Q Consensus 350 ~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~--~----g~~~~~~~~v~ 423 (842)
+|...+..+. +.+++...++|..++..++|. . ..+..|...|.
T Consensus 182 ~h~~~v~~~~-------------------------------~~~~~~~l~sg~~d~~v~~wd~~~~~~~~~~~~h~~~v~ 230 (340)
T 1got_B 182 GHTGDVMSLS-------------------------------LAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDIN 230 (340)
T ss_dssp CCSSCEEEEE-------------------------------ECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEE
T ss_pred CCCCceEEEE-------------------------------ECCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCcCCEE
Confidence 7655433333 333334445566666555554 1 13556888899
Q ss_pred EEEECCCCc-EEEEeCCCeEEEEcC-CCCeeeeeec--CCccEEEEEe--cCCEEEEEecCcEEEEEeCC-Ccccccccc
Q 003171 424 ALTTSIDGM-IWTGGANGLLLQWDP-NGNRLQDFQY--LPFAVQCLCT--FGSQIWVGYMNGIVQVLDLE-GNLLGGWVA 496 (842)
Q Consensus 424 al~~s~dg~-l~Sgs~DgtIrlWD~-~g~~l~~l~~--H~~~V~sls~--dG~~LasGs~DgtIrlWD~~-g~~i~~l~g 496 (842)
+++++|+|. +++|+.||+|++||+ +++.+.++.. +...|.++++ +|++|++|+.|++|+|||+. ++.+.++.+
T Consensus 231 ~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~~~~ 310 (340)
T 1got_B 231 AICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAG 310 (340)
T ss_dssp EEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEEC
T ss_pred EEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEccCCcccceEEEEECCCCCEEEEECCCCeEEEEEcccCcEeeEeec
Confidence 999999987 899999999999999 6777776653 3357888764 78999999999999999986 778899999
Q ss_pred cccCEEEEEe--CCCEEEEEcCCCCeeecc
Q 003171 497 HSSPVIKMAV--GAGYIFTLANHGGIRGWN 524 (842)
Q Consensus 497 H~~~V~sla~--dg~~l~S~S~DgtIrvWd 524 (842)
|.+.|.++++ ++.+++|+|.|++|++||
T Consensus 311 h~~~v~~~~~s~dg~~l~s~s~D~~i~iWd 340 (340)
T 1got_B 311 HDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp CSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred CCCcEEEEEEcCCCCEEEEEcCCccEEecC
Confidence 9999999984 788999999999999997
|
| >2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.3e-31 Score=306.81 Aligned_cols=360 Identities=16% Similarity=0.186 Sum_probs=260.7
Q ss_pred eeEEEEecCC--EEEE-ecCCCEEEEeCCCCccccccccccccCCCCCCCCCCeeeeeecCCCeEEEEEcCCCCEEEEEe
Q 003171 134 FLRTIVCTEE--QLWA-GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGH 210 (842)
Q Consensus 134 ~~~~l~~~~~--~l~~-~~D~~vrvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~V~~la~dpdg~~LaSGs 210 (842)
.+++|+.+.+ .|.+ +.|++|+|||.. ..... .+ ..| .++|.||+|+|+|++|+||+
T Consensus 18 ~V~~~a~spdg~~las~~~d~~v~iWd~~-~~~~~-----------------~l--~gh-~~~V~~l~fspdg~~las~~ 76 (577)
T 2ymu_A 18 SVRGVAFSPDGQTIASASDDKTVKLWNRN-GQLLQ-----------------TL--TGH-SSSVWGVAFSPDGQTIASAS 76 (577)
T ss_dssp CEEEEEECTTSSCEEEEETTSEEEEECTT-SCEEE-----------------EE--ECC-SSCEEEEEECTTSSEEEEEE
T ss_pred cEEEEEECCCCCEEEEEeCCCEEEEEECC-CCEEE-----------------EE--eCC-CCCEEEEEECCCCCEEEEEe
Confidence 5677777644 4444 568999999953 22111 12 123 78999999999999999999
Q ss_pred CCCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCCC-EEEeeCCCcEEEEeCCCccceeecCCCceeeeEEE
Q 003171 211 RDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALI 289 (842)
Q Consensus 211 ~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~~t~~~~l~~~~~~~~~~~l~ 289 (842)
.|++|++||+.+ +.+..+.+|.++|++|+|+|+|+ |++++.|+++++|+....... ...........+.
T Consensus 77 ~d~~i~vWd~~~---------~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~~~~~~~~~~~~~-~~~~~~~~v~~~~ 146 (577)
T 2ymu_A 77 DDKTVKLWNRNG---------QLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQ-TLTGHSSSVWGVA 146 (577)
T ss_dssp TTSCEEEEETTS---------CEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCCEEE-EECCCSSCEEEEE
T ss_pred CCCEEEEEECCC---------CEEEEEECCCCCEEEEEECCCCCEEEEEcCCCceeecccccceee-eccCCCCceeeee
Confidence 999999999755 57888999999999999999998 789999999999998652211 1111111111111
Q ss_pred Ee------------eceeecccceeccceeeeecCCEEEEEEcCCCCEEEEeC-CCcEEEEEccCCcEEEEeecCCceEe
Q 003171 290 VE------------RSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVFNIDGQIEN 356 (842)
Q Consensus 290 ~~------------~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s-~~tI~lWD~~tg~~l~~l~~~~~~~~ 356 (842)
.. ......................+..+...+++..+++++ +++|++||. +++++..+..|...+.
T Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~w~~-~~~~~~~~~~~~~~v~ 225 (577)
T 2ymu_A 147 FSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVR 225 (577)
T ss_dssp ECTTSSCEEEEETTSEEEEECTTSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECT-TSCEEEEEECCSSCEE
T ss_pred eecCCccceecccccceeccccceeeeeeccCCCcceeeeeecCCCCEEEEEcCCCEEEEEeC-CCcEEEEEecCCCCEE
Confidence 00 000000000000001112345678888988888888876 678999995 6778888888776666
Q ss_pred eeecccCCCccc--ccceEEEEEecCC--------CCccceeeeEeecCcceEEecCCcEEEEee-cC----ccccCCCc
Q 003171 357 RVDMSLLPDFAM--EDEFKTKIVTSSK--------KDKAQSSFGFFQRSRNAIMGAADAVRRVAA-KG----GFGDDNRR 421 (842)
Q Consensus 357 ~~~~s~~~~~~~--~~~~~~~~~s~~~--------~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~-~g----~~~~~~~~ 421 (842)
.+.+++.....+ ..+..+++|.... ....+..+.|.+++...+++..++..+++. .+ .+.+|...
T Consensus 226 ~~~~s~dg~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~v~~v~~~~d~~~l~~~~~d~~i~~w~~~~~~~~~~~~h~~~ 305 (577)
T 2ymu_A 226 GVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVNGVAFRPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSS 305 (577)
T ss_dssp EEEECTTSSCEEEEETTSCEEEECTTSCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTSCEEEEECCCSSC
T ss_pred EEEECCCCCEEEEEeCCCEEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCEEEEEeCCCcEEEEEecCCCC
Confidence 666666443321 1121233333211 122344677888888888888888777765 22 34568889
Q ss_pred eEEEEECCCCc-EEEEeCCCeEEEEcCCCCeeeeeecCCccEEEEEe--cCCEEEEEecCcEEEEEeCCCcccccccccc
Q 003171 422 TEALTTSIDGM-IWTGGANGLLLQWDPNGNRLQDFQYLPFAVQCLCT--FGSQIWVGYMNGIVQVLDLEGNLLGGWVAHS 498 (842)
Q Consensus 422 v~al~~s~dg~-l~Sgs~DgtIrlWD~~g~~l~~l~~H~~~V~sls~--dG~~LasGs~DgtIrlWD~~g~~i~~l~gH~ 498 (842)
|.+++++|++. +++++.|++|++||.+++.+..+.+|...|.++++ +|++|++|+.|++|++||.+++++.++.+|.
T Consensus 306 v~~~~~~~~~~~l~t~~~d~~i~~w~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~~~~~~~~~~~~~ 385 (577)
T 2ymu_A 306 VWGVAFSPDGQTIASASDDKTVKLWNRNGQHLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHS 385 (577)
T ss_dssp EEEEEECTTSSEEEEEETTSCEEEEETTSCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTCCEEEEEECCS
T ss_pred eEEEEECCCCCEEEEEeCCCeEEEEeCCCCeeEEEeCCCCCEEEEEECCCCCEEEEEeCCCEEEEEcCCCCEEEEecCCC
Confidence 99999999987 78999999999999999889999999999998864 7899999999999999999899999999999
Q ss_pred cCEEEEEe--CCCEEEEEcCCCCeeeccc
Q 003171 499 SPVIKMAV--GAGYIFTLANHGGIRGWNV 525 (842)
Q Consensus 499 ~~V~sla~--dg~~l~S~S~DgtIrvWd~ 525 (842)
..|.++++ |++++++++.|++|++|+.
T Consensus 386 ~~v~~~~~s~dg~~l~~~~~d~~v~~~~~ 414 (577)
T 2ymu_A 386 SSVRGVAFSPDGQTIASASDDKTVKLWNR 414 (577)
T ss_dssp SCEEEEEECTTSSCEEEEETTSEEEEECT
T ss_pred CCeEEEEECCCCCEEEEEeCCCEEEEEeC
Confidence 99999984 7889999999999999995
|
| >2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A | Back alignment and structure |
|---|
Probab=100.00 E-value=9.9e-31 Score=282.95 Aligned_cols=268 Identities=16% Similarity=0.153 Sum_probs=209.9
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCCC-EEEeeCCCcEEEEeC
Q 003171 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPW 269 (842)
Q Consensus 191 ~~~V~~la~dpdg~~LaSGs~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~ 269 (842)
..+|.|++|+|++++|+||+.||+|++||+.++ .++..+++|..+|.+++|+|+++ |++||.|++||+||+
T Consensus 13 ~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~--------~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~vwd~ 84 (304)
T 2ynn_A 13 SDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQ--------VEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNY 84 (304)
T ss_dssp CSCEEEEEECSSSSEEEEEETTSEEEEEETTTT--------EEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEET
T ss_pred CCceEEEEECCCCCEEEEEcCCCcEEEEECCCC--------ceeEEeeccCCcEEEEEEeCCCCEEEEECCCCEEEEEEC
Confidence 789999999999999999999999999999987 67888999999999999999998 789999999999999
Q ss_pred CCccceeecCCCceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcCCCCEEEEeC-CCcEEEEEccCC-cEEEE
Q 003171 270 EAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTR-ELLKV 347 (842)
Q Consensus 270 ~t~~~~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s-~~tI~lWD~~tg-~~l~~ 347 (842)
.+++....+. +| ...+.++++++++..+++++ |++|++||++++ .+..+
T Consensus 85 ~~~~~~~~~~-------------------~h----------~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~ 135 (304)
T 2ynn_A 85 NTGEKVVDFE-------------------AH----------PDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQT 135 (304)
T ss_dssp TTCCEEEEEE-------------------CC----------SSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEE
T ss_pred CCCcEEEEEe-------------------CC----------CCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhhh
Confidence 7755332221 22 45688899999888888887 689999999988 44566
Q ss_pred eecCCceEeeeecccCCCcccccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEeecC------cc-ccCCC
Q 003171 348 FNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKG------GF-GDDNR 420 (842)
Q Consensus 348 l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g------~~-~~~~~ 420 (842)
+.+|...+..+.+++. ++...++|..++..++|... .+ ..+..
T Consensus 136 ~~~h~~~v~~v~~~p~------------------------------~~~~l~sgs~D~~v~iwd~~~~~~~~~~~~~~~~ 185 (304)
T 2ynn_A 136 FEGHEHFVMCVAFNPK------------------------------DPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQER 185 (304)
T ss_dssp ECCCCSCEEEEEECTT------------------------------CTTEEEEEETTSEEEEEETTCSSCSEEEECCCTT
T ss_pred hcccCCcEEEEEECCC------------------------------CCCEEEEEeCCCeEEEEECCCCCccceeccCCcC
Confidence 7666554433333321 12234555666666655411 11 13446
Q ss_pred ceEEEEECC--CCc-EEEEeCCCeEEEEcC-CCCeeeeeecCCccEEEEEe--cCCEEEEEecCcEEEEEeCC-Cccccc
Q 003171 421 RTEALTTSI--DGM-IWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQCLCT--FGSQIWVGYMNGIVQVLDLE-GNLLGG 493 (842)
Q Consensus 421 ~v~al~~s~--dg~-l~Sgs~DgtIrlWD~-~g~~l~~l~~H~~~V~sls~--dG~~LasGs~DgtIrlWD~~-g~~i~~ 493 (842)
.+..+.++| ++. |++|+.|++|++||+ +++++.++.+|...|.++++ ++++|++|+.||+|+|||++ ++++++
T Consensus 186 ~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~~~~~~~~ 265 (304)
T 2ynn_A 186 GVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKT 265 (304)
T ss_dssp CEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEE
T ss_pred cEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCccceeeCCCCCCEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeee
Confidence 677788765 554 899999999999999 78999999999999998864 68899999999999999997 788999
Q ss_pred ccccccCEEEEEe--CCC--EEEEEcCCCCeeecccc
Q 003171 494 WVAHSSPVIKMAV--GAG--YIFTLANHGGIRGWNVT 526 (842)
Q Consensus 494 l~gH~~~V~sla~--dg~--~l~S~S~DgtIrvWd~~ 526 (842)
+.+|...|+++++ ++. ++++++ |.++.+|++.
T Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~asg~-~~g~~~~~~~ 301 (304)
T 2ynn_A 266 LNVGLERSWCIATHPTGRKNYIASGF-DNGFTVLSLG 301 (304)
T ss_dssp ECCSSSSEEEEEECTTCGGGCEEEEE-TTEEEEEECC
T ss_pred ccCCCccEEEEEECCCCCceEEEEec-CCceEEEEec
Confidence 9999999999984 443 466665 4557788764
|
| >3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.4e-31 Score=290.44 Aligned_cols=282 Identities=15% Similarity=0.168 Sum_probs=207.3
Q ss_pred eEEEEec--CCEEEE-ecCCCEEEEeCCCCccccccccccccCCCCCCCCCCeeeeeecCCCeEEEEEcCCCCEEEEEeC
Q 003171 135 LRTIVCT--EEQLWA-GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGHR 211 (842)
Q Consensus 135 ~~~l~~~--~~~l~~-~~D~~vrvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~V~~la~dpdg~~LaSGs~ 211 (842)
+..|+.+ +..|.+ +.|++|||||+.+...... ......| ..+|.|++|+|+|++|+||+.
T Consensus 19 v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~----------------~~~~~~h-~~~v~~~~~sp~g~~l~s~s~ 81 (345)
T 3fm0_A 19 CWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICK----------------SVLSEGH-QRTVRKVAWSPCGNYLASASF 81 (345)
T ss_dssp EEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEE----------------EEECSSC-SSCEEEEEECTTSSEEEEEET
T ss_pred EEEEEECCCCCEEEEEcCCCeEEEEEcCCCcceee----------------eeecccc-CCcEEEEEECCCCCEEEEEEC
Confidence 4456655 344554 5699999999865321100 0001123 779999999999999999999
Q ss_pred CCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCCC-EEEeeCCCcEEEEeCCCccceeecCCCceeeeEEEE
Q 003171 212 DGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIV 290 (842)
Q Consensus 212 DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~~t~~~~l~~~~~~~~~~~l~~ 290 (842)
|++|++|++..+. .+....+.+|.++|++|+|+|+|+ |+|||.|++|++||+.+..... ...
T Consensus 82 D~~v~iw~~~~~~------~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~-------~~~---- 144 (345)
T 3fm0_A 82 DATTCIWKKNQDD------FECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYE-------CVS---- 144 (345)
T ss_dssp TSCEEEEEECCC-------EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEE-------EEE----
T ss_pred CCcEEEEEccCCC------eEEEEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeE-------EEE----
Confidence 9999999987752 245678899999999999999998 7899999999999986532110 000
Q ss_pred eeceeecccceeccceeeeecCCEEEEEEcCCCCEEEEeC-CCcEEEEEccCCcEEEEeecCCceEeeeecccCCCcccc
Q 003171 291 ERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAME 369 (842)
Q Consensus 291 ~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s-~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~~~~ 369 (842)
.+.+| ...+..++.++++..+++++ +++|++||..+++.....
T Consensus 145 -----~~~~h----------~~~v~~~~~~p~~~~l~s~s~d~~i~~w~~~~~~~~~~~--------------------- 188 (345)
T 3fm0_A 145 -----VLNSH----------TQDVKHVVWHPSQELLASASYDDTVKLYREEEDDWVCCA--------------------- 188 (345)
T ss_dssp -----EECCC----------CSCEEEEEECSSSSCEEEEETTSCEEEEEEETTEEEEEE---------------------
T ss_pred -----EecCc----------CCCeEEEEECCCCCEEEEEeCCCcEEEEEecCCCEEEEE---------------------
Confidence 01112 45688889988888888877 679999998765431110
Q ss_pred cceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEeecCccccCCCceEEEEECCCCc-EEEEeCCCeEEEEcC-
Q 003171 370 DEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGM-IWTGGANGLLLQWDP- 447 (842)
Q Consensus 370 ~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~al~~s~dg~-l~Sgs~DgtIrlWD~- 447 (842)
.+.+|...|.+++|+|+|+ |++|+.|++|++||.
T Consensus 189 --------------------------------------------~~~~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~ 224 (345)
T 3fm0_A 189 --------------------------------------------TLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQY 224 (345)
T ss_dssp --------------------------------------------EECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEEE
T ss_pred --------------------------------------------EecCCCCceEEEEECCCCCEEEEEeCCCeEEEeccc
Confidence 0223455678899999997 899999999999986
Q ss_pred CC---------------Ceeeeeec-CCccEEEEEe--cCCEEEEEecCcEEEEEeCCC-c---------cccccccccc
Q 003171 448 NG---------------NRLQDFQY-LPFAVQCLCT--FGSQIWVGYMNGIVQVLDLEG-N---------LLGGWVAHSS 499 (842)
Q Consensus 448 ~g---------------~~l~~l~~-H~~~V~sls~--dG~~LasGs~DgtIrlWD~~g-~---------~i~~l~gH~~ 499 (842)
.. +++.++.+ |...|+++++ ++..|++|+.|++|++||.+. . ....+.+|.+
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~ 304 (345)
T 3fm0_A 225 LPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQ 304 (345)
T ss_dssp CTTCTTCCCCC---CEEEEEEEECSSCSSCEEEEEECTTTCCEEEEETTSCEEEEEECTTSCTTSCCEEEEEEETTSSSS
T ss_pred cCCCCccceeeccCCccceeEEecCCCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCcceeeEEEEeeecccccC
Confidence 21 34555655 8899999875 688999999999999999752 1 1233568999
Q ss_pred CEEEEEe--CC-CEEEEEcCCCCeeeccccCCCC
Q 003171 500 PVIKMAV--GA-GYIFTLANHGGIRGWNVTSPGP 530 (842)
Q Consensus 500 ~V~sla~--dg-~~l~S~S~DgtIrvWd~~~~~~ 530 (842)
.|++|++ ++ ..++|+|.||+|++|++....+
T Consensus 305 ~V~~v~~~p~~~~~laS~s~Dg~v~~W~~~~~~~ 338 (345)
T 3fm0_A 305 DVNCVAWNPKEPGLLASCSDDGEVAFWKYQRPEG 338 (345)
T ss_dssp CEEEEEECSSSTTEEEEEETTSCEEEEEECC---
T ss_pred cEeEeEEeCCCceEEEEcCCCCcEEEEEecCCCC
Confidence 9999996 34 4899999999999999876543
|
| >2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-30 Score=288.93 Aligned_cols=274 Identities=16% Similarity=0.212 Sum_probs=213.6
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCCC-EEEeeCCCcEEEEeC
Q 003171 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPW 269 (842)
Q Consensus 191 ~~~V~~la~dpdg~~LaSGs~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~ 269 (842)
.++|.|++|+|++++|+||+.||+|++||..++ +....+..|...|.+++|+|+|. |++|+.|++|++|++
T Consensus 64 ~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~--------~~~~~~~~~~~~v~~~~~sp~g~~lasg~~d~~i~v~~~ 135 (354)
T 2pbi_B 64 GNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTT--------NKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSVYPL 135 (354)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSEEEEEETTTC--------CEEEEEECSSSCCCEEEECTTSSEEEEESTTSEEEEEEC
T ss_pred CCeEEEEEECCCCCEEEEEeCCCeEEEEECCCC--------CcceEEecCCCCEEEEEECCCCCEEEEeeCCCCEEEEEE
Confidence 789999999999999999999999999999886 56777889999999999999998 789999999999998
Q ss_pred CCccceeecCCCceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcCCCCEEEEeC-CCcEEEEEccCCcEEEEe
Q 003171 270 EAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVF 348 (842)
Q Consensus 270 ~t~~~~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s-~~tI~lWD~~tg~~l~~l 348 (842)
......... . .... +. .+...+.++.+.+++..+++++ |++|++||+.+++++.++
T Consensus 136 ~~~~~~~~~--~--~~~~---------~~----------~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~~~ 192 (354)
T 2pbi_B 136 TFDKNENMA--A--KKKS---------VA----------MHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSF 192 (354)
T ss_dssp CCCTTCCSG--G--GCEE---------EE----------ECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEE
T ss_pred ecccccccc--c--ccee---------ee----------ccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeEEEEE
Confidence 642211000 0 0000 01 1245677888888888887776 689999999999999999
Q ss_pred ecCCceEeeeecccCCCcccccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEee--cC----ccccCCCce
Q 003171 349 NIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAA--KG----GFGDDNRRT 422 (842)
Q Consensus 349 ~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~--~g----~~~~~~~~v 422 (842)
.+|...+..+.+.+.. .+...++|..++..++|. .+ .+..|...|
T Consensus 193 ~~h~~~v~~~~~~~~~-----------------------------~g~~l~sgs~Dg~v~~wd~~~~~~~~~~~~h~~~v 243 (354)
T 2pbi_B 193 HGHGADVLCLDLAPSE-----------------------------TGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDV 243 (354)
T ss_dssp ECCSSCEEEEEECCCS-----------------------------SCCEEEEEETTSCEEEEETTTCCEEEEECCCSSCE
T ss_pred cCCCCCeEEEEEEeCC-----------------------------CCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCe
Confidence 8776543333332211 112335555565555554 12 345678899
Q ss_pred EEEEECCCCc-EEEEeCCCeEEEEcC-CCCeeeeeecC--CccEEEEE--ecCCEEEEEecCcEEEEEeCC-Cccccccc
Q 003171 423 EALTTSIDGM-IWTGGANGLLLQWDP-NGNRLQDFQYL--PFAVQCLC--TFGSQIWVGYMNGIVQVLDLE-GNLLGGWV 495 (842)
Q Consensus 423 ~al~~s~dg~-l~Sgs~DgtIrlWD~-~g~~l~~l~~H--~~~V~sls--~dG~~LasGs~DgtIrlWD~~-g~~i~~l~ 495 (842)
.+++++|++. +++|+.|++|++||+ .++++..+..+ ...+.+++ ++|++|++|+.|++|+|||+. ++.+..+.
T Consensus 244 ~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~l~ 323 (354)
T 2pbi_B 244 NSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILF 323 (354)
T ss_dssp EEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEEC
T ss_pred EEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCcccceeEEEEeCCCCEEEEEECCCcEEEEECCCCceEEEEE
Confidence 9999999987 899999999999999 56676666543 34677775 479999999999999999985 78889999
Q ss_pred ccccCEEEEEe--CCCEEEEEcCCCCeeecc
Q 003171 496 AHSSPVIKMAV--GAGYIFTLANHGGIRGWN 524 (842)
Q Consensus 496 gH~~~V~sla~--dg~~l~S~S~DgtIrvWd 524 (842)
+|.+.|+++++ |+++|+|+|.|++|++|+
T Consensus 324 ~h~~~v~~l~~spdg~~l~sgs~D~~v~vW~ 354 (354)
T 2pbi_B 324 GHENRVSTLRVSPDGTAFCSGSWDHTLRVWA 354 (354)
T ss_dssp CCSSCEEEEEECTTSSCEEEEETTSEEEEEC
T ss_pred CCCCcEEEEEECCCCCEEEEEcCCCCEEecC
Confidence 99999999984 888999999999999996
|
| >3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-31 Score=300.31 Aligned_cols=277 Identities=16% Similarity=0.215 Sum_probs=207.1
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCCC-EEEeeCCCcEEEEeC
Q 003171 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPW 269 (842)
Q Consensus 191 ~~~V~~la~dpdg~~LaSGs~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~ 269 (842)
.++|.|++|+|++++|+||+.||+|++||+.++ +....+.+|...|.+++|+|+|+ |++|+.|++|++|++
T Consensus 66 ~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~--------~~~~~~~~h~~~v~~~~~s~~g~~las~~~d~~v~iw~~ 137 (380)
T 3iz6_a 66 SGKVYSLDWTPEKNWIVSASQDGRLIVWNALTS--------QKTHAIKLHCPWVMECAFAPNGQSVACGGLDSACSIFNL 137 (380)
T ss_dssp SSCEEEEEECTTSSCEEEEETTSEEEEEETTTT--------EEEEEEECCCTTCCCCEECTTSSEEEECCSSSCCEEEEC
T ss_pred ccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCC--------ccceEEecCCCCEEEEEECCCCCEEEEeeCCCcEEEEEC
Confidence 789999999999999999999999999999987 67888999999999999999998 789999999999999
Q ss_pred CCccceeecCCCceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcCC-CCEEEEeC-CCcEEEEEccCCcEEEE
Q 003171 270 EAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHS-RAKVWSAG-FLSFALWDARTRELLKV 347 (842)
Q Consensus 270 ~t~~~~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~-~~~v~s~s-~~tI~lWD~~tg~~l~~ 347 (842)
.+....-...... ..+.+| ...+..+.+.+. +..+++++ |++|++||+.+++++.+
T Consensus 138 ~~~~~~~~~~~~~------------~~~~gh----------~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~ 195 (380)
T 3iz6_a 138 SSQADRDGNMPVS------------RVLTGH----------KGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISI 195 (380)
T ss_dssp CCCSSCCCSSTTC------------CBCCCC----------SSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEE
T ss_pred CCCccccCCccce------------eeccCC----------CcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEE
Confidence 6532100000000 001122 222333344343 34566665 68999999999999887
Q ss_pred eec-----CCceEeeeecccCCCcccccceEEEEEecCCCCccceeeeEee-cCcceEEecCCcEEEEeec-------Cc
Q 003171 348 FNI-----DGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQ-RSRNAIMGAADAVRRVAAK-------GG 414 (842)
Q Consensus 348 l~~-----~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~-~~~~~~~g~~~~v~~v~~~-------g~ 414 (842)
+.. |...+ .++.+.+ ++...+.|..++..++|.. ..
T Consensus 196 ~~~~~~~~h~~~v-------------------------------~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~ 244 (380)
T 3iz6_a 196 FGSEFPSGHTADV-------------------------------LSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRT 244 (380)
T ss_dssp ECCCSSSSCCSCE-------------------------------EEEEECSSSCCEEEEEETTSCEEEEETTTTCCCCEE
T ss_pred eecccCCCCccCe-------------------------------EEEEeecCCCCEEEEEECCCeEEEEECCCCCcceEE
Confidence 732 11111 1122222 2334566777777666651 13
Q ss_pred cccCCCceEEEEECCCCc-EEEEeCCCeEEEEcC-CCCeeeeeecCCc-------cEEEEE--ecCCEEEEEecCcEEEE
Q 003171 415 FGDDNRRTEALTTSIDGM-IWTGGANGLLLQWDP-NGNRLQDFQYLPF-------AVQCLC--TFGSQIWVGYMNGIVQV 483 (842)
Q Consensus 415 ~~~~~~~v~al~~s~dg~-l~Sgs~DgtIrlWD~-~g~~l~~l~~H~~-------~V~sls--~dG~~LasGs~DgtIrl 483 (842)
+.+|...|.+++++|+|. +++|+.||+|++||+ ++++++.+..|.. .|.+++ ++|++|++|+.||+|+|
T Consensus 245 ~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~v 324 (380)
T 3iz6_a 245 YHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYV 324 (380)
T ss_dssp ECCCSSCCCEEEECTTSSEEEEECSSSCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEE
T ss_pred ECCcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCCcEEEEecccccccccccCceEEEEECCCCCEEEEEECCCCEEE
Confidence 456888999999999987 899999999999999 7888888765432 366665 57999999999999999
Q ss_pred EeCC-Ccccccc----cccccCEEEEE--eCCCEEEEEcCCCCeeeccccCC
Q 003171 484 LDLE-GNLLGGW----VAHSSPVIKMA--VGAGYIFTLANHGGIRGWNVTSP 528 (842)
Q Consensus 484 WD~~-g~~i~~l----~gH~~~V~sla--~dg~~l~S~S~DgtIrvWd~~~~ 528 (842)
||+. ++.+..+ .+|.+.|++++ +|+++|+|||.|++|++|++...
T Consensus 325 wd~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~iW~~~~~ 376 (380)
T 3iz6_a 325 WDTLLAEMVLNLGTLQNSHEGRISCLGLSSDGSALCTGSWDKNLKIWAFSGH 376 (380)
T ss_dssp EETTTCCEEEEECCSCSSCCCCCCEEEECSSSSEEEEECTTSCEEEEECCSS
T ss_pred EECCCCceEEEEecccCCCCCceEEEEECCCCCEEEEeeCCCCEEEEecCCC
Confidence 9986 6655554 78999999988 48899999999999999998653
|
| >1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-30 Score=292.95 Aligned_cols=286 Identities=15% Similarity=0.166 Sum_probs=217.6
Q ss_pred ceeEEEEecCC--EEEE-ecCCCEEEEeCCCCccccccccccccCCCCCCCCCCeeeeeecCCCeEEEEEcCCCCEEEEE
Q 003171 133 CFLRTIVCTEE--QLWA-GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSG 209 (842)
Q Consensus 133 ~~~~~l~~~~~--~l~~-~~D~~vrvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~V~~la~dpdg~~LaSG 209 (842)
..+.+++.+.+ .|.+ +.|++|+|||+.+..... ....| ..+|.|++|+|++++|+||
T Consensus 109 ~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~-------------------~l~~h-~~~V~~v~~~~~~~~l~sg 168 (410)
T 1vyh_C 109 SPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFER-------------------TLKGH-TDSVQDISFDHSGKLLASC 168 (410)
T ss_dssp SCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCE-------------------EECCC-SSCEEEEEECTTSSEEEEE
T ss_pred CcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEE-------------------EEecc-CCcEEEEEEcCCCCEEEEE
Confidence 45777777644 4554 569999999997654321 11233 7899999999999999999
Q ss_pred eCCCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCCC-EEEeeCCCcEEEEeCCCccceeecCCCceeeeEE
Q 003171 210 HRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEKALSLKPEERHTAAL 288 (842)
Q Consensus 210 s~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~~t~~~~l~~~~~~~~~~~l 288 (842)
+.||+|++||+.++ +++.++.+|...|++++|+|+|. |+|||.|++|++||+.++.....+.
T Consensus 169 s~D~~i~iwd~~~~--------~~~~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~~~~--------- 231 (410)
T 1vyh_C 169 SADMTIKLWDFQGF--------ECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFT--------- 231 (410)
T ss_dssp ETTSCCCEEETTSS--------CEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEE---------
T ss_pred eCCCeEEEEeCCCC--------ceeEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEe---------
Confidence 99999999999886 67788999999999999999998 7899999999999997754322221
Q ss_pred EEeeceeecccceeccceeeeecCCEEEEEEcCCCCEEEEeC-CCcEEEEEccCCcEEEEeecCCceEeeeecccCCCcc
Q 003171 289 IVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFA 367 (842)
Q Consensus 289 ~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s-~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~~ 367 (842)
+| ...+.++...+++..+++++ |++|++||+.++++...+..|...+..+.+++.....
T Consensus 232 ----------~h----------~~~v~~~~~~~~g~~l~s~s~D~~v~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~ 291 (410)
T 1vyh_C 232 ----------GH----------REWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYS 291 (410)
T ss_dssp ----------CC----------SSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGG
T ss_pred ----------CC----------CccEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeEecCCCceEEEEEEcCccccc
Confidence 12 34577788888888888877 6899999999999999998887766666665533221
Q ss_pred cccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEee--cC----ccccCCCceEEEEECCCCc-EEEEeCCC
Q 003171 368 MEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAA--KG----GFGDDNRRTEALTTSIDGM-IWTGGANG 440 (842)
Q Consensus 368 ~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~--~g----~~~~~~~~v~al~~s~dg~-l~Sgs~Dg 440 (842)
..... ... . .......+...++|..++..++|. .+ .+.+|...|.+++++|+|. |++|+.|+
T Consensus 292 ~~~~~-----~~~---~---~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~ 360 (410)
T 1vyh_C 292 SISEA-----TGS---E---TKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDK 360 (410)
T ss_dssp GGGGC-----CSC---C----------CCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSCEEEEETTT
T ss_pred chhhh-----ccc---c---ccccCCCCCEEEEEeCCCeEEEEECCCCceEEEEECCCCcEEEEEEcCCCCEEEEEeCCC
Confidence 10000 000 0 000111234567788888777775 22 3556888999999999987 89999999
Q ss_pred eEEEEcC-CCCeeeeeecCCccEEEEEe--cCCEEEEEecCcEEEEEeC
Q 003171 441 LLLQWDP-NGNRLQDFQYLPFAVQCLCT--FGSQIWVGYMNGIVQVLDL 486 (842)
Q Consensus 441 tIrlWD~-~g~~l~~l~~H~~~V~sls~--dG~~LasGs~DgtIrlWD~ 486 (842)
+|++||. ++++++++.+|...|+++++ ++.+|++|+.|++|+|||.
T Consensus 361 ~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sgs~D~~i~vW~~ 409 (410)
T 1vyh_C 361 TLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWEC 409 (410)
T ss_dssp EEEEECCTTSCCCEEEECCSSCEEEEEECSSSSCEEEEETTSEEEEEC-
T ss_pred eEEEEECCCCceEEEEcCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEeC
Confidence 9999999 78999999999999999875 6889999999999999986
|
| >2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-30 Score=285.07 Aligned_cols=285 Identities=12% Similarity=0.122 Sum_probs=200.2
Q ss_pred eeEEEEecCCEEEE-ecCCCEEEEeCCCCccccccccccccCCCCCCCCCCeeeeeecCCCeEEEEEcCCCCEEEEEeCC
Q 003171 134 FLRTIVCTEEQLWA-GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGHRD 212 (842)
Q Consensus 134 ~~~~l~~~~~~l~~-~~D~~vrvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~V~~la~dpdg~~LaSGs~D 212 (842)
.+.+++.+.+.|.+ +.|++|++||+.+...... ..+....| ..+|.|++|+|++++|++|+.|
T Consensus 16 ~v~~~~~s~~~las~~~D~~i~lw~~~~~~~~~~---------------~~~~~~~h-~~~v~~v~~sp~~~~las~s~D 79 (330)
T 2hes_X 16 KIWSFDFSQGILATGSTDRKIKLVSVKYDDFTLI---------------DVLDETAH-KKAIRSVAWRPHTSLLAAGSFD 79 (330)
T ss_dssp CEEEEEEETTEEEEEESSSCEEEEECSSSCCEEE---------------EEECTTCC-CSCEEEEEECTTSSEEEEEETT
T ss_pred ceeeeccCCCEEEEEcCCCEEEEEEecCCCeEEE---------------EEEecCCc-cCCEEEEEECCCCCEEEEEeCC
Confidence 56777777775554 5699999999975311000 00101114 7799999999999999999999
Q ss_pred CcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCCC-EEEeeCCCcEEEEeCCCccceeecCCCceeeeEEEEe
Q 003171 213 GRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVE 291 (842)
Q Consensus 213 GtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~~t~~~~l~~~~~~~~~~~l~~~ 291 (842)
++|++|++..... ..........+.+|.++|++|+|+|+|+ |+|||.|++|++||+....... ....
T Consensus 80 ~~v~iw~~~~~~~-~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~------~~~~----- 147 (330)
T 2hes_X 80 STVSIWAKEESAD-RTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEY------ECIS----- 147 (330)
T ss_dssp SCEEEEEC--------CCCEEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCC------EEEE-----
T ss_pred CcEEEEEcccCcC-ccccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCe------EEEE-----
Confidence 9999999864210 0011245667899999999999999998 7899999999999984321100 0000
Q ss_pred eceeecccceeccceeeeecCCEEEEEEcCCCCEEEEeC-CCcEEEEEccCCc--EEEEeecCCceEeeeecccCCCccc
Q 003171 292 RSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRE--LLKVFNIDGQIENRVDMSLLPDFAM 368 (842)
Q Consensus 292 ~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s-~~tI~lWD~~tg~--~l~~l~~~~~~~~~~~~s~~~~~~~ 368 (842)
.+.+| ...+.++++++++..|++++ |++|++||..++. ++.++
T Consensus 148 ----~~~~h----------~~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~-------------------- 193 (330)
T 2hes_X 148 ----VLQEH----------SQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDDWECVAVL-------------------- 193 (330)
T ss_dssp ----EECCC----------SSCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEE--------------------
T ss_pred ----EeccC----------CCceEEEEECCCCCEEEEEcCCCeEEEEECCCCCeeEEEEc--------------------
Confidence 01122 45688899998888888887 6899999987652 22222
Q ss_pred ccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEeecCccccCCCceEEEEECCC--Cc-EEEEeCCCeEEEE
Q 003171 369 EDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSID--GM-IWTGGANGLLLQW 445 (842)
Q Consensus 369 ~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~al~~s~d--g~-l~Sgs~DgtIrlW 445 (842)
.+|...|.+++|+|+ +. |++|+.|++|++|
T Consensus 194 -----------------------------------------------~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw 226 (330)
T 2hes_X 194 -----------------------------------------------NGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVW 226 (330)
T ss_dssp -----------------------------------------------CCCSSCEEEEEECCSSSSCEEEEEETTSCEEEE
T ss_pred -----------------------------------------------cCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEE
Confidence 234455667788887 54 8999999999999
Q ss_pred cCC-C--------Ceeeeeec-CCccEEEEEec-CCEEEEEecCcEEEEEeCC-Cc--cc-cccccccc-CEEEEEe---
Q 003171 446 DPN-G--------NRLQDFQY-LPFAVQCLCTF-GSQIWVGYMNGIVQVLDLE-GN--LL-GGWVAHSS-PVIKMAV--- 506 (842)
Q Consensus 446 D~~-g--------~~l~~l~~-H~~~V~sls~d-G~~LasGs~DgtIrlWD~~-g~--~i-~~l~gH~~-~V~sla~--- 506 (842)
|+. + .++..+.+ |...|+++++. +.+|++|+.||+|+|||.. ++ ++ ..+.+|.. .|.++++
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~h~~~~v~~v~~~~~ 306 (330)
T 2hes_X 227 KYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGFNGLIASVGADGVLAVYEEVDGEWKVFAKRALCHGVYEINVVKWLEL 306 (330)
T ss_dssp EEEEECTTSCEEEEEEEECCSCCSSCEEEEEECTTSCEEEEETTSCEEEEEEETTEEEEEEEESCTTTTSCEEEEEEC--
T ss_pred EecCCCccccceeEEeeecccccccceEEEEEcCCCEEEEEeCCCEEEEEEcCCCceEEEeccccccccceEEEEEEecC
Confidence 983 3 35556665 99999999874 5589999999999999986 42 33 34578987 8999984
Q ss_pred -CCCEEEEEcCCCCeeeccccC
Q 003171 507 -GAGYIFTLANHGGIRGWNVTS 527 (842)
Q Consensus 507 -dg~~l~S~S~DgtIrvWd~~~ 527 (842)
+++.|+|+|.|++|++|++..
T Consensus 307 ~~~~~las~s~Dg~v~~W~~~~ 328 (330)
T 2hes_X 307 NGKTILATGGDDGIVNFWSLEK 328 (330)
T ss_dssp ---CCEEEEETTSEEEEEEC--
T ss_pred CCceEEEEecCCCcEEEEEecc
Confidence 467899999999999999754
|
| >4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ... | Back alignment and structure |
|---|
Probab=99.98 E-value=2.3e-30 Score=279.63 Aligned_cols=267 Identities=21% Similarity=0.245 Sum_probs=212.2
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCCC-EEEeeCCCcEEEEeC
Q 003171 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPW 269 (842)
Q Consensus 191 ~~~V~~la~dpdg~~LaSGs~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~ 269 (842)
..+|.|++|+|++++|++|+.||+|++|++.++ +....+.+|..+|++++|+|+|+ |++|+.|++|++||+
T Consensus 23 ~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~--------~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~ 94 (312)
T 4ery_A 23 TKAVSSVKFSPNGEWLASSSADKLIKIWGAYDG--------KFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDV 94 (312)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSCEEEEETTTC--------CEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEET
T ss_pred CCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCc--------ccchhhccCCCceEEEEEcCCCCEEEEECCCCEEEEEEC
Confidence 789999999999999999999999999999887 56778899999999999999998 789999999999999
Q ss_pred CCccceeecCCCceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcCCCCEEEEeC-CCcEEEEEccCCcEEEEe
Q 003171 270 EAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVF 348 (842)
Q Consensus 270 ~t~~~~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s-~~tI~lWD~~tg~~l~~l 348 (842)
.+++....+ ++| ...+.++.+.+++..+++++ +++|++||+++++++..+
T Consensus 95 ~~~~~~~~~-------------------~~~----------~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~ 145 (312)
T 4ery_A 95 SSGKCLKTL-------------------KGH----------SNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTL 145 (312)
T ss_dssp TTCCEEEEE-------------------ECC----------SSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEE
T ss_pred CCCcEEEEE-------------------cCC----------CCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEEEEEe
Confidence 765432211 112 34577888888888888876 679999999999998888
Q ss_pred ecCCceEeeeecccCCCcccccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEee--cCc----c-ccCCCc
Q 003171 349 NIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAA--KGG----F-GDDNRR 421 (842)
Q Consensus 349 ~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~--~g~----~-~~~~~~ 421 (842)
..|......+. +.+++...+++..++..+++. .+. + ..+...
T Consensus 146 ~~~~~~v~~~~-------------------------------~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~ 194 (312)
T 4ery_A 146 PAHSDPVSAVH-------------------------------FNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPP 194 (312)
T ss_dssp CCCSSCEEEEE-------------------------------ECTTSSEEEEEETTSCEEEEETTTCCEEEEECCSSCCC
T ss_pred cCCCCcEEEEE-------------------------------EcCCCCEEEEEeCCCcEEEEECCCCceeeEEeccCCCc
Confidence 76654333333 333333445555555555553 111 1 234557
Q ss_pred eEEEEECCCCc-EEEEeCCCeEEEEcC-CCCeeeeeecCCccEEEE----E-ecCCEEEEEecCcEEEEEeCC-Cccccc
Q 003171 422 TEALTTSIDGM-IWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQCL----C-TFGSQIWVGYMNGIVQVLDLE-GNLLGG 493 (842)
Q Consensus 422 v~al~~s~dg~-l~Sgs~DgtIrlWD~-~g~~l~~l~~H~~~V~sl----s-~dG~~LasGs~DgtIrlWD~~-g~~i~~ 493 (842)
+..++++|++. +++++.|+.|++||+ +++++..+.+|...+.++ . .++.+|++|+.||+|++||++ ++++..
T Consensus 195 ~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~ 274 (312)
T 4ery_A 195 VSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQK 274 (312)
T ss_dssp EEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEECSSCCSSSCCCEEEECSSSCEEEECCTTSCEEEEETTTCCEEEE
T ss_pred eEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEEecCCceEEEEEEEEeCCCcEEEEECCCCEEEEEECCCchhhhh
Confidence 88899999997 789999999999999 789999999887754432 3 357899999999999999997 678999
Q ss_pred ccccccCEEEEEe--CCCEEEEEc--CCCCeeeccc
Q 003171 494 WVAHSSPVIKMAV--GAGYIFTLA--NHGGIRGWNV 525 (842)
Q Consensus 494 l~gH~~~V~sla~--dg~~l~S~S--~DgtIrvWd~ 525 (842)
+.+|.+.|.++++ ++..+++++ .|++|++|+.
T Consensus 275 ~~~h~~~v~~~~~~p~~~~l~s~~~~~d~~i~~W~~ 310 (312)
T 4ery_A 275 LQGHTDVVISTACHPTENIIASAALENDKTIKLWKS 310 (312)
T ss_dssp ECCCSSCEEEEEECSSSSEEEEEECTTTCCEEEEEC
T ss_pred hhccCCcEEEEeecCcCCceEEEEccCCccEEEecC
Confidence 9999999999984 778899887 6999999985
|
| >3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.98 E-value=1e-30 Score=285.85 Aligned_cols=239 Identities=17% Similarity=0.221 Sum_probs=194.5
Q ss_pred CCCeEEEEEcCC----CCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCCC-EEEeeCCCcEE
Q 003171 191 VSSVMCMVGDEA----SGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIK 265 (842)
Q Consensus 191 ~~~V~~la~dpd----g~~LaSGs~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIr 265 (842)
..+|.|++|+|+ +++|+||+.|++||+|++.++. ......+.||..+|++++|++++. ++|||.|++||
T Consensus 32 ~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~------~~~~~~l~gh~~~v~~~~~~~~~~~l~s~s~D~~i~ 105 (321)
T 3ow8_A 32 DDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDER------LDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIR 105 (321)
T ss_dssp SSCEEEEEEC-------CEEEEEETTSCEEEEEEETTE------EEEEEEECCCSSCEEEEEECSSSSEEEEEETTSEEE
T ss_pred CCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCC------eeeeeeeccCCCCEEEEEECCCCCEEEEEeCCCcEE
Confidence 789999999874 6799999999999999987752 123456899999999999999998 68999999999
Q ss_pred EEeCCCccceeecCCCceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcCCCCEEEEeC-CCcEEEEEccCCcE
Q 003171 266 IWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTREL 344 (842)
Q Consensus 266 vWd~~t~~~~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s-~~tI~lWD~~tg~~ 344 (842)
+||+.+++....+.. + ...+..+++++++..+++++ +++|++||+.+++.
T Consensus 106 lWd~~~~~~~~~~~~-------------------~----------~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~~ 156 (321)
T 3ow8_A 106 LWDLENGKQIKSIDA-------------------G----------PVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKK 156 (321)
T ss_dssp EEETTTTEEEEEEEC-------------------C----------TTCCCCEEECTTSSEEEEECTTSEEEEEETTTCSE
T ss_pred EEECCCCCEEEEEeC-------------------C----------CccEEEEEECCCCCEEEEEcCCCcEEEEEcCCCce
Confidence 999977543221111 1 22455677888888888887 57899999988776
Q ss_pred EEEeecCCceEeeeecccCCCcccccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEeecCccccCCCceEE
Q 003171 345 LKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEA 424 (842)
Q Consensus 345 l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~a 424 (842)
...+.. +...+.+
T Consensus 157 ~~~~~~-------------------------------------------------------------------~~~~v~~ 169 (321)
T 3ow8_A 157 EYSLDT-------------------------------------------------------------------RGKFILS 169 (321)
T ss_dssp EEEEEC-------------------------------------------------------------------SSSCEEE
T ss_pred eEEecC-------------------------------------------------------------------CCceEEE
Confidence 443321 1223567
Q ss_pred EEECCCCc-EEEEeCCCeEEEEcC-CCCeeeeeecCCccEEEEEe--cCCEEEEEecCcEEEEEeCC-Cccccccccccc
Q 003171 425 LTTSIDGM-IWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQCLCT--FGSQIWVGYMNGIVQVLDLE-GNLLGGWVAHSS 499 (842)
Q Consensus 425 l~~s~dg~-l~Sgs~DgtIrlWD~-~g~~l~~l~~H~~~V~sls~--dG~~LasGs~DgtIrlWD~~-g~~i~~l~gH~~ 499 (842)
++++|+|+ |++|+.||+|++||+ ++++++++.+|..+|+++++ +|++|++|+.|++|+|||++ ++++.++.+|.+
T Consensus 170 ~~~spdg~~lasg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~ 249 (321)
T 3ow8_A 170 IAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHAS 249 (321)
T ss_dssp EEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCCCEEEECTTSCEEEEECTTSCEEEEETTTCCEEEEECCCSS
T ss_pred EEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCcceeEEEcCCCC
Confidence 88999988 899999999999999 78999999999999998865 78999999999999999997 678899999999
Q ss_pred CEEEEEe--CCCEEEEEcCCCCeeeccccCCCCC
Q 003171 500 PVIKMAV--GAGYIFTLANHGGIRGWNVTSPGPL 531 (842)
Q Consensus 500 ~V~sla~--dg~~l~S~S~DgtIrvWd~~~~~~~ 531 (842)
.|.++++ ++++++|++.|++|++||+.+..++
T Consensus 250 ~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~~~ 283 (321)
T 3ow8_A 250 WVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCV 283 (321)
T ss_dssp CEEEEEECTTSSEEEEEETTSCEEEEETTTTEEE
T ss_pred ceEEEEECCCCCEEEEEeCCCcEEEEeCCCCEEE
Confidence 9999985 7889999999999999998765443
|
| >3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R* | Back alignment and structure |
|---|
Probab=99.98 E-value=6.2e-30 Score=278.80 Aligned_cols=277 Identities=18% Similarity=0.211 Sum_probs=205.9
Q ss_pred CCCeEEEEEcCCC-CEEEEEeCCCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCCC-EEEeeCCCcEEEEe
Q 003171 191 VSSVMCMVGDEAS-GVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWP 268 (842)
Q Consensus 191 ~~~V~~la~dpdg-~~LaSGs~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd 268 (842)
.++|.+++++|++ ++|+||+.|++|++|++.+.. ......+..+++|..+|++++|+|+|+ |+|||.|++|||||
T Consensus 17 ~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~---~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~v~~wd 93 (319)
T 3frx_A 17 NGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDD---QKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWD 93 (319)
T ss_dssp SSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEET---TEEEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred cceEEEEEccCCCccEEEEecCCccEEEecCCCCC---ccccccceEEeCCcccEEEEEECCCCCEEEEEeCCCEEEEEE
Confidence 8899999999965 899999999999999986531 000134567899999999999999998 78999999999999
Q ss_pred CCCccceeecCCCceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcCCCCEEEEeC-CCcEEEEEccCCcEEEE
Q 003171 269 WEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKV 347 (842)
Q Consensus 269 ~~t~~~~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s-~~tI~lWD~~tg~~l~~ 347 (842)
+.+++....+ .+| ...+.++++++++..+++++ |++|++||++ ++++.+
T Consensus 94 ~~~~~~~~~~-------------------~~h----------~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~-~~~~~~ 143 (319)
T 3frx_A 94 VATGETYQRF-------------------VGH----------KSDVMSVDIDKKASMIISGSRDKTIKVWTIK-GQCLAT 143 (319)
T ss_dssp TTTTEEEEEE-------------------ECC----------SSCEEEEEECTTSCEEEEEETTSCEEEEETT-SCEEEE
T ss_pred CCCCCeeEEE-------------------ccC----------CCcEEEEEEcCCCCEEEEEeCCCeEEEEECC-CCeEEE
Confidence 9775432211 122 45688888888888888887 6799999996 556677
Q ss_pred eecCCceEeeeecccCCCcccccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEeec------CccccCCCc
Q 003171 348 FNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAK------GGFGDDNRR 421 (842)
Q Consensus 348 l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~------g~~~~~~~~ 421 (842)
+.+|...+..+.+.+.... ...+...+.+..++..++|.. ..+.+|...
T Consensus 144 ~~~h~~~v~~~~~~~~~~~-------------------------~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~ 198 (319)
T 3frx_A 144 LLGHNDWVSQVRVVPNEKA-------------------------DDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSN 198 (319)
T ss_dssp ECCCSSCEEEEEECCC-------------------------------CCEEEEEETTSCEEEEETTTTEEEEEECCCCSC
T ss_pred EeccCCcEEEEEEccCCCC-------------------------CCCccEEEEEeCCCEEEEEECCcchhheeecCCCCc
Confidence 7666654433333321110 001123455556665555541 235578889
Q ss_pred eEEEEECCCCc-EEEEeCCCeEEEEcC-CCCeeeeeecCCccEEEEEe--cCCEEEEEecCcEEEEEeCCC-cccccc--
Q 003171 422 TEALTTSIDGM-IWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQCLCT--FGSQIWVGYMNGIVQVLDLEG-NLLGGW-- 494 (842)
Q Consensus 422 v~al~~s~dg~-l~Sgs~DgtIrlWD~-~g~~l~~l~~H~~~V~sls~--dG~~LasGs~DgtIrlWD~~g-~~i~~l-- 494 (842)
|.+++++|+|. |++|+.||+|++||+ +++++.++..| ..|.++++ +|.+|++++. ..|++|+++. .++..+
T Consensus 199 v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~v~~~~~sp~~~~la~~~~-~~i~v~~~~~~~~~~~~~~ 276 (319)
T 3frx_A 199 INTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQ-DEVFSLAFSPNRYWLAAATA-TGIKVFSLDPQYLVDDLRP 276 (319)
T ss_dssp EEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEECC-SCEEEEEECSSSSEEEEEET-TEEEEEEETTEEEEEEECC
T ss_pred EEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEecCC-CcEEEEEEcCCCCEEEEEcC-CCcEEEEeCcCeeeeccCc
Confidence 99999999997 899999999999999 68888888754 67888864 7888888764 5699999874 333322
Q ss_pred ------cccccCEEEEE--eCCCEEEEEcCCCCeeeccccC
Q 003171 495 ------VAHSSPVIKMA--VGAGYIFTLANHGGIRGWNVTS 527 (842)
Q Consensus 495 ------~gH~~~V~sla--~dg~~l~S~S~DgtIrvWd~~~ 527 (842)
.+|...|.+++ +||++|++++.|++|++|++.+
T Consensus 277 ~~~~~~~~~~~~v~~~~~spdg~~l~sg~~Dg~i~vWd~~t 317 (319)
T 3frx_A 277 EFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQVMT 317 (319)
T ss_dssp CCTTCCGGGCCCEEEEEECTTSSEEEEEETTSCEEEEEEEE
T ss_pred cccccccCcCcceeEEEECCCCCEEEEeecCceEEEEEEee
Confidence 35678899988 5899999999999999999764
|
| >2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R | Back alignment and structure |
|---|
Probab=99.97 E-value=1.5e-29 Score=278.14 Aligned_cols=275 Identities=17% Similarity=0.193 Sum_probs=196.0
Q ss_pred eeEEEEe--------cCCEEEE-ecCCCEEEEeCCCCccccccccccccCCCCCCCCCCee-eeeecCCCeEEEEEcCCC
Q 003171 134 FLRTIVC--------TEEQLWA-GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFK-ESVKGVSSVMCMVGDEAS 203 (842)
Q Consensus 134 ~~~~l~~--------~~~~l~~-~~D~~vrvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~~~V~~la~dpdg 203 (842)
.+.+++. ++..|.+ +.|++|++||+.+...... ...+.. ...| ..+|.+++++|++
T Consensus 23 ~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~-------------~~~~~~~l~~h-~~~V~~~~~~~~~ 88 (343)
T 2xzm_R 23 WVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGY-------------FGIPHKALTGH-NHFVSDLALSQEN 88 (343)
T ss_dssp CEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSB-------------SEEEEEEECCC-SSCEEEEEECSST
T ss_pred hhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccc-------------cccccchhccC-CCceEEEEECCCC
Confidence 4666665 2334555 5699999999865321110 000111 1123 7899999999999
Q ss_pred CEEEEEeCCCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCCC-EEEeeCCCcEEEEeCCCccceeecCCCc
Q 003171 204 GVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEKALSLKPEE 282 (842)
Q Consensus 204 ~~LaSGs~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~~t~~~~l~~~~~~ 282 (842)
.+|+||+.|++||+||+.++ +....+.+|.++|++|+|+|+|+ |+||+.|++|++||+... ........
T Consensus 89 ~~l~s~s~D~~v~lwd~~~~--------~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~-~~~~~~~~- 158 (343)
T 2xzm_R 89 CFAISSSWDKTLRLWDLRTG--------TTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGE-CKFSSAEK- 158 (343)
T ss_dssp TEEEEEETTSEEEEEETTSS--------CEEEEEECCCSCEEEEEECSSTTEEEEEETTSCEEEEESSSC-EEEECCTT-
T ss_pred CEEEEEcCCCcEEEEECCCC--------cEEEEEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccCC-ceeeeecc-
Confidence 99999999999999999987 67788999999999999999998 789999999999998632 11111100
Q ss_pred eeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcCCC----------CEEEEeC-CCcEEEEEccCCcEEEEeecC
Q 003171 283 RHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSR----------AKVWSAG-FLSFALWDARTRELLKVFNID 351 (842)
Q Consensus 283 ~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~----------~~v~s~s-~~tI~lWD~~tg~~l~~l~~~ 351 (842)
.+| ...+.++.+++.+ ..+++++ +++|++||. +++++.++
T Consensus 159 ---------------~~~----------~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~-~~~~~~~~--- 209 (343)
T 2xzm_R 159 ---------------ENH----------SDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNT-NFQIRYTF--- 209 (343)
T ss_dssp ---------------TSC----------SSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEET-TTEEEEEE---
T ss_pred ---------------cCC----------CceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcC-CCceeEEE---
Confidence 011 2345566665544 4666666 678999994 33332222
Q ss_pred CceEeeeecccCCCcccccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEeecCccccCCCceEEEEECCCC
Q 003171 352 GQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDG 431 (842)
Q Consensus 352 ~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~al~~s~dg 431 (842)
..|...|.+++++|+|
T Consensus 210 ----------------------------------------------------------------~~h~~~v~~~~~s~~g 225 (343)
T 2xzm_R 210 ----------------------------------------------------------------KAHESNVNHLSISPNG 225 (343)
T ss_dssp ----------------------------------------------------------------ECCSSCEEEEEECTTS
T ss_pred ----------------------------------------------------------------cCccccceEEEECCCC
Confidence 1234457788999999
Q ss_pred c-EEEEeCCCeEEEEcC-CC-CeeeeeecCCccEEEEEe--cCCEEEEEecCcEEEEEeCC-Ccccc--cc---------
Q 003171 432 M-IWTGGANGLLLQWDP-NG-NRLQDFQYLPFAVQCLCT--FGSQIWVGYMNGIVQVLDLE-GNLLG--GW--------- 494 (842)
Q Consensus 432 ~-l~Sgs~DgtIrlWD~-~g-~~l~~l~~H~~~V~sls~--dG~~LasGs~DgtIrlWD~~-g~~i~--~l--------- 494 (842)
+ |++|+.||+|++||+ +. .....+ .+...|.++++ ++.+|++ +.|++|++||+. ++... ++
T Consensus 226 ~~l~sgs~dg~v~iwd~~~~~~~~~~~-~~~~~v~~v~~sp~~~~la~-~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~ 303 (343)
T 2xzm_R 226 KYIATGGKDKKLLIWDILNLTYPQREF-DAGSTINQIAFNPKLQWVAV-GTDQGVKIFNLMTQSKAPVCTIEAEPITKAE 303 (343)
T ss_dssp SEEEEEETTCEEEEEESSCCSSCSEEE-ECSSCEEEEEECSSSCEEEE-EESSCEEEEESSSCCSCSEEECCCCSGGGBT
T ss_pred CEEEEEcCCCeEEEEECCCCcccceee-cCCCcEEEEEECCCCCEEEE-ECCCCEEEEEeCCCCCCceEEeecCcchhhh
Confidence 7 899999999999999 54 344444 35667998865 5667765 568899999986 33322 33
Q ss_pred --cccccCEEEEEe--CCCEEEEEcCCCCeeeccccC
Q 003171 495 --VAHSSPVIKMAV--GAGYIFTLANHGGIRGWNVTS 527 (842)
Q Consensus 495 --~gH~~~V~sla~--dg~~l~S~S~DgtIrvWd~~~ 527 (842)
.+|...|+++++ ++++|++|+.||+|++|++.+
T Consensus 304 ~~~~~~~~v~~~~~sp~g~~l~sg~~Dg~v~~w~~~~ 340 (343)
T 2xzm_R 304 GQKGKNPQCTSLAWNALGKKLFAGFTDGVIRTFSFET 340 (343)
T ss_dssp TBCCSCCCEEEEEECSSSCCEEEEETTSEEEEEEEEE
T ss_pred hhcCCCCceEEEEECCCCCeEEEecCCceEEEEEEEc
Confidence 379999999985 788999999999999999754
|
| >3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=8.5e-29 Score=316.75 Aligned_cols=406 Identities=14% Similarity=0.126 Sum_probs=268.3
Q ss_pred CCCcccccccCCCcccccccccccCCCCCCCceeecCCCCCccccCceeEEEEec--CCEEEE-ecCCCEEEEeCCCCcc
Q 003171 87 SSSLPEYIGKGGDIPMFKPPVRAALHPARPPSLEVKPHPLRETQIGCFLRTIVCT--EEQLWA-GGENGLRVWNLKELYD 163 (842)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~l~~-~~D~~vrvWdl~~~~~ 163 (842)
+++-..++..||.+|. ++-+-.........+..|. ..+.+++.+ ++.|.+ +.|+.|+|||+.+...
T Consensus 623 ~s~~~~~l~s~~~d~~----i~vw~~~~~~~~~~~~~h~-------~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~ 691 (1249)
T 3sfz_A 623 FSQDGQRIASCGADKT----LQVFKAETGEKLLDIKAHE-------DEVLCCAFSSDDSYIATCSADKKVKIWDSATGKL 691 (1249)
T ss_dssp ECTTSSEEEEEETTSC----EEEEETTTCCEEEEECCCS-------SCEEEEEECTTSSEEEEEETTSEEEEEETTTCCE
T ss_pred ECCCCCEEEEEeCCCe----EEEEECCCCCEEEEeccCC-------CCEEEEEEecCCCEEEEEeCCCeEEEEECCCCce
Confidence 4566778888877764 3333222222223333332 356677765 335555 5689999999986543
Q ss_pred ccccccccccCCCCCCCCCCeeeeeecCCCeEEEEEcC--CCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEecccC
Q 003171 164 ESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDE--ASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHR 241 (842)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~V~~la~dp--dg~~LaSGs~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~ 241 (842)
... + ..| ..+|.|++|+| ++.++++|+.||+|++||+.++ +...++.+|.
T Consensus 692 ~~~-----------------~--~~~-~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~--------~~~~~~~~h~ 743 (1249)
T 3sfz_A 692 VHT-----------------Y--DEH-SEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQK--------ECRNTMFGHT 743 (1249)
T ss_dssp EEE-----------------E--ECC-SSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSS--------SEEEEECCCS
T ss_pred EEE-----------------E--cCC-CCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCc--------chhheecCCC
Confidence 211 1 223 77999999999 5569999999999999999987 6788899999
Q ss_pred CcEEEEEEecCCC-EEEeeCCCcEEEEeCCCccceeec-------------------------CCCceeeeEEEEeec--
Q 003171 242 GPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEKALSL-------------------------KPEERHTAALIVERS-- 293 (842)
Q Consensus 242 ~~V~slafs~dG~-L~SgS~DgtIrvWd~~t~~~~l~~-------------------------~~~~~~~~~l~~~~s-- 293 (842)
++|++++|+|+|+ |++|+.||+|++||+.++...... .+....+... ....
T Consensus 744 ~~v~~~~~sp~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~-~~~~v~ 822 (1249)
T 3sfz_A 744 NSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVA-AKNKVL 822 (1249)
T ss_dssp SCEEEEEECSSTTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEE-ETTEEE
T ss_pred CCEEEEEEecCCCEEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEE-cCCcEE
Confidence 9999999999998 789999999999999764322111 1111111111 0010
Q ss_pred eeecccceeccceeeeecCCEEEEEEcCCCCEEEEeC-CCcEEEEEccCCcEEEEeecCCceEeeeecccCCCccc----
Q 003171 294 YIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAM---- 368 (842)
Q Consensus 294 ~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s-~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~~~---- 368 (842)
.+++............+...+.++++++++..+++++ +++|++||+.++..+..+.+|...+..+.+++.....+
T Consensus 823 ~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~s~s~ 902 (1249)
T 3sfz_A 823 LFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTASD 902 (1249)
T ss_dssp EEETTTCCEEEEEECSSSSCCCEEEECSSTTEEEEECSSSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEET
T ss_pred EEEecCCCceeEEcCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeeecCCCccceEEEEECCCCCEEEEEeC
Confidence 1111111100011112245678888999888888877 57899999999999998888877666666655432211
Q ss_pred ccceEEEE------------------------------------------------------------------------
Q 003171 369 EDEFKTKI------------------------------------------------------------------------ 376 (842)
Q Consensus 369 ~~~~~~~~------------------------------------------------------------------------ 376 (842)
+..+++|.
T Consensus 903 dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~g~~~ 982 (1249)
T 3sfz_A 903 DQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDED 982 (1249)
T ss_dssp TSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEEECTTSSEEEEEETT
T ss_pred CCeEEEEEccccceeeeecccceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCcEEEEEEcCCCCEEEEEcCC
Confidence 11111111
Q ss_pred -----EecC---------CCCccceeeeEeecCcceEEecCCcEEEEee--cC---ccccCCCceEEEEECCCCcEEEEe
Q 003171 377 -----VTSS---------KKDKAQSSFGFFQRSRNAIMGAADAVRRVAA--KG---GFGDDNRRTEALTTSIDGMIWTGG 437 (842)
Q Consensus 377 -----~s~~---------~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~--~g---~~~~~~~~v~al~~s~dg~l~Sgs 437 (842)
+... .....+..+.|.+++...+++..++..++|. .+ .+..+...+.++++++++.+++++
T Consensus 983 g~i~i~d~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~ 1062 (1249)
T 3sfz_A 983 GAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYVFLQAHQETVKDFRLLQDSRLLSWS 1062 (1249)
T ss_dssp SCCEEEETTTTSCEEECCCCSSCCCCEEECSSSSCEEEECSSSBEEEEETTTTEEECCBCCSSCEEEEEECSSSEEEEEE
T ss_pred CCEEEEEcCCCceeeecccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCceEEEecCCCcEEEEEEcCCCcEEEEE
Confidence 0000 0011122345555555666666666655554 12 233466677788888888888888
Q ss_pred CCCeEEEEcC-CCCeeeeeecCCccEEEEE--ecCCEEEEEecCcEEEEEeCC-CcccccccccccCEEEEEe--CCCEE
Q 003171 438 ANGLLLQWDP-NGNRLQDFQYLPFAVQCLC--TFGSQIWVGYMNGIVQVLDLE-GNLLGGWVAHSSPVIKMAV--GAGYI 511 (842)
Q Consensus 438 ~DgtIrlWD~-~g~~l~~l~~H~~~V~sls--~dG~~LasGs~DgtIrlWD~~-g~~i~~l~gH~~~V~sla~--dg~~l 511 (842)
.|++|++||+ ++++++++.+|...|.+++ ++|++|++|+.|++|++||+. ++++.++.+|.+.|+++++ +++++
T Consensus 1063 ~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~s~d~~v~iwd~~~~~~~~~l~~h~~~v~~~~~s~dg~~l 1142 (1249)
T 3sfz_A 1063 FDGTVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLSPLHELKGHNGCVRCSAFSLDGILL 1142 (1249)
T ss_dssp SSSEEEEEETTTTCCCEEEECCSSCCCCEEECSSSSSCEEECCSSCCCEECSSSSSCSBCCCCCSSCEEEEEECSSSSEE
T ss_pred CCCcEEEEECCCCceeEEEcccCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCcceeeeeccCCCcEEEEEECCCCCEE
Confidence 8888888888 6788888888888888765 467888888888888888876 6778888888888888874 77788
Q ss_pred EEEcCCCCeeeccccCCCCCc
Q 003171 512 FTLANHGGIRGWNVTSPGPLD 532 (842)
Q Consensus 512 ~S~S~DgtIrvWd~~~~~~~d 532 (842)
++++.||+|++||+.+..++.
T Consensus 1143 at~~~dg~i~vwd~~~~~~~~ 1163 (1249)
T 3sfz_A 1143 ATGDDNGEIRIWNVSDGQLLH 1163 (1249)
T ss_dssp EEEETTSCCCEEESSSSCCCC
T ss_pred EEEeCCCEEEEEECCCCceEE
Confidence 888888888888887655443
|
| >2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.7e-29 Score=313.69 Aligned_cols=380 Identities=10% Similarity=0.070 Sum_probs=250.3
Q ss_pred CCCcccccccCCCcccccccccccCCCCCCCceeecCCCCCccccCceeEEEEecCCE-EEE-ecCCCEEEEeCCCCccc
Q 003171 87 SSSLPEYIGKGGDIPMFKPPVRAALHPARPPSLEVKPHPLRETQIGCFLRTIVCTEEQ-LWA-GGENGLRVWNLKELYDE 164 (842)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-l~~-~~D~~vrvWdl~~~~~~ 164 (842)
+.+..++|+.|+.+|. |+-+-.. ....+...+| ...++.|++..++ |.+ +.|++|+|||+.+....
T Consensus 25 fspdg~~lAsgs~Dg~----I~lw~~~-~~~~~~~~~~-------~~~V~~l~fspg~~L~S~s~D~~v~lWd~~~~~~~ 92 (902)
T 2oaj_A 25 FDFTQNLLAIATVTGE----VHIYGQQ-QVEVVIKLED-------RSAIKEMRFVKGIYLVVINAKDTVYVLSLYSQKVL 92 (902)
T ss_dssp EETTTTEEEEEETTSE----EEEECST-TCEEEEECSS-------CCCEEEEEEETTTEEEEEETTCEEEEEETTTCSEE
T ss_pred ECCCCCEEEEEeCCCE----EEEEeCC-CcEEEEEcCC-------CCCEEEEEEcCCCEEEEEECcCeEEEEECCCCcEE
Confidence 4667788988888775 3333221 1111122122 2357777766454 554 57999999999764322
Q ss_pred cccccccccCCCCCCCCCCeeeeeecCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCccee----------
Q 003171 165 SESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEV---------- 234 (842)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~V~~la~dpdg~~LaSGs~DGtIrlWdl~~g~~~~~~~~~~~---------- 234 (842)
. .+ .+ ...|.|++|+|++++|++|+.||+|++||+.++ ...
T Consensus 93 ~-----------------~~---~~-~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~--------~~~~~~i~~~~~~ 143 (902)
T 2oaj_A 93 T-----------------TV---FV-PGKITSIDTDASLDWMLIGLQNGSMIVYDIDRD--------QLSSFKLDNLQKS 143 (902)
T ss_dssp E-----------------EE---EC-SSCEEEEECCTTCSEEEEEETTSCEEEEETTTT--------EEEEEEECCHHHH
T ss_pred E-----------------EE---cC-CCCEEEEEECCCCCEEEEEcCCCcEEEEECCCC--------ccccceecccccc
Confidence 1 11 13 568999999999999999999999999999886 221
Q ss_pred -EEecccCCcEEEEEEecCC--CEEEeeCCCcEEEEeCCCccceeecCCCceeeeEEEEeeceeecccceeccc-----e
Q 003171 235 -LSWQAHRGPVLSLCISSYG--DLWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNG-----F 306 (842)
Q Consensus 235 -~~l~gH~~~V~slafs~dG--~L~SgS~DgtIrvWd~~t~~~~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~-----~ 306 (842)
..+++|.++|++|+|+|++ .|++|+.|++| +||+.+.+....+..+.. .+...+ .
T Consensus 144 ~~~~~~h~~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~----------------~g~~~~~~~~~~ 206 (902)
T 2oaj_A 144 SFFPAARLSPIVSIQWNPRDIGTVLISYEYVTL-TYSLVENEIKQSFIYELP----------------PFAPGGDFSEKT 206 (902)
T ss_dssp HTCSSSCCCCCCEEEEETTEEEEEEEECSSCEE-EEETTTTEEEEEECCCBC----------------TTCCCSTTCCCT
T ss_pred ccccccCCCCeEEEEEccCCCCEEEEEeCCCcE-EEECCCCceEEEEecccC----------------CcCCCccccccc
Confidence 2357899999999999974 48899999999 999977543222211100 000000 0
Q ss_pred eeeecCCEEEEEEcCCCCEEEEeC-CCcEEEEEccCCcEEEE--ee---cC-------------CceEeeeecccC--CC
Q 003171 307 SSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKV--FN---ID-------------GQIENRVDMSLL--PD 365 (842)
Q Consensus 307 ~~~~s~~v~~las~~~~~~v~s~s-~~tI~lWD~~tg~~l~~--l~---~~-------------~~~~~~~~~s~~--~~ 365 (842)
...+...+.++++++++..+++++ |++|++||+++++++.. +. .| ...+..+.+++. .+
T Consensus 207 ~~~h~~~V~~v~fspdg~~lasgs~Dg~i~lWd~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd 286 (902)
T 2oaj_A 207 NEKRTPKVIQSLYHPNSLHIITIHEDNSLVFWDANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPE 286 (902)
T ss_dssp TSCBCCCEEEEEECTTSSEEEEEETTCCEEEEETTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTT
T ss_pred ccccCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCC
Confidence 000134688999999999898887 67999999999988754 21 11 111222222110 00
Q ss_pred --c-----cccc-----c--------------------------------------------------------------
Q 003171 366 --F-----AMED-----E-------------------------------------------------------------- 371 (842)
Q Consensus 366 --~-----~~~~-----~-------------------------------------------------------------- 371 (842)
. ..+. .
T Consensus 287 ~~~ll~sg~~~~~~~~~~v~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~ 366 (902)
T 2oaj_A 287 YTSLLISHKSISRGDNQSLTMIDLGYTPRYSITSYEGMKNYYANPKQMKIFPLPTNVPIVNILPIPRQSPYFAGCHNPGL 366 (902)
T ss_dssp EEEEEEEEECSTTSSCCCEEEEEEEECCCGGGCCHHHHHHHHHSCSEEEEECCSSSSCEEEEEECCSSCSHHHHTBSCSE
T ss_pred CCEEEEeCCCCCCCCCceEEEEecCCCCCccccchhhhhhhhcCccceEEEecCCCCceEEEEECCCCCCCcCCCCCcee
Confidence 0 0000 0
Q ss_pred -------eEEEEEecC-CC--C-------------ccc----------------------------------eeeeEeec
Q 003171 372 -------FKTKIVTSS-KK--D-------------KAQ----------------------------------SSFGFFQR 394 (842)
Q Consensus 372 -------~~~~~~s~~-~~--~-------------~~~----------------------------------~s~~~~~~ 394 (842)
..+++|.-. .. . ..+ .++.|+++
T Consensus 367 l~~~s~dg~l~~~~~~~g~~~~~~~~~~~~l~~~~~~v~~~~~s~~~~~~w~~~~~~~~~~~~~l~G~~~~v~sv~~spd 446 (902)
T 2oaj_A 367 ILLILGNGEIETMLYPSGIFTDKASLFPQNLSWLRPLATTSMAASVPNKLWLGALSAAQNKDYLLKGGVRTKRQKLPAEY 446 (902)
T ss_dssp EEEEETTSCEEEEETTTCCEECCGGGSCGGGTTBTTBEEEEEEEEEEHHHHHHHHHTTBCCCCSCCCSBCCCCCCCCCSE
T ss_pred EEEEcCCCcEEEEECCCCCcccccccCCCcccccCCCeeEEEEEEcCHHHHHHHHhcccCCCCcccCCcCCCCccccccc
Confidence 001122110 00 0 000 01233445
Q ss_pred CcceEEecCCcEEEEee--cCccc---------------cCCCceEEEEECCCCc-EEEEeCCCeEEEEcC-CC------
Q 003171 395 SRNAIMGAADAVRRVAA--KGGFG---------------DDNRRTEALTTSIDGM-IWTGGANGLLLQWDP-NG------ 449 (842)
Q Consensus 395 ~~~~~~g~~~~v~~v~~--~g~~~---------------~~~~~v~al~~s~dg~-l~Sgs~DgtIrlWD~-~g------ 449 (842)
+...++|+.|+..++|. .+.+. +|...|.+++|+|||+ |++|+.||+|+|||+ ++
T Consensus 447 g~~laSgs~DgtVrlWd~~~g~~~~~~~~~~~l~~~~~~~h~~~V~svafspdg~~LAsgs~DgtV~lwd~~~~~~~~~~ 526 (902)
T 2oaj_A 447 GTAFITGHSNGSVRIYDASHGDIQDNASFEVNLSRTLNKAKELAVDKISFAAETLELAVSIETGDVVLFKYEVNQFYSVE 526 (902)
T ss_dssp EEEEEEEETTSEEEEEESSCCTTTTTBCEEEEHHHHTTCSSSCCEEEEEEETTTTEEEEEETTSCEEEEEEEECCC----
T ss_pred CcEEEEecCCCcEEEEECCCccccCCceEEeechhhcCCCCCCceeEEEecCCCCeEEEEecCcEEEEEEecCccccCcc
Confidence 55677888888888876 23221 4667899999999998 799999999999998 44
Q ss_pred ---------------------------------------CeeeeeecCCccEEEEE--ecCCEEEEEecCcEEEEEeCCC
Q 003171 450 ---------------------------------------NRLQDFQYLPFAVQCLC--TFGSQIWVGYMNGIVQVLDLEG 488 (842)
Q Consensus 450 ---------------------------------------~~l~~l~~H~~~V~sls--~dG~~LasGs~DgtIrlWD~~g 488 (842)
+++.++.+|..+|++++ +|| +||+|+.|++|+|||+++
T Consensus 527 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~h~~~V~svafSpdG-~lAsgs~D~tv~lwd~~~ 605 (902)
T 2oaj_A 527 NRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVHANKGKTSAINNSNIG-FVGIAYAAGSLMLIDRRG 605 (902)
T ss_dssp -----------CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEECCCSCSEEEEEECBTS-EEEEEETTSEEEEEETTT
T ss_pred ccCCCcccceeeeeccccCCccccccccccCCCCCCCccceeEEEEcCCCcEEEEEecCCc-EEEEEeCCCcEEEEECCC
Confidence 24678889999999886 579 999999999999999885
Q ss_pred c-cc-----cccc-ccccCEEEEEeC----------CCEEEEEcCCCCeeeccc
Q 003171 489 N-LL-----GGWV-AHSSPVIKMAVG----------AGYIFTLANHGGIRGWNV 525 (842)
Q Consensus 489 ~-~i-----~~l~-gH~~~V~sla~d----------g~~l~S~S~DgtIrvWd~ 525 (842)
. .+ +.+. +|++.|++|++. +.+|+||+.|++|++||+
T Consensus 606 ~~~~~~~~~~~~~~gh~~~V~sv~Fs~~~~~~Dg~~~~~l~sgs~D~tv~~wd~ 659 (902)
T 2oaj_A 606 PAIIYMENIREISGAQSACVTCIEFVIMEYGDDGYSSILMVCGTDMGEVITYKI 659 (902)
T ss_dssp TEEEEEEEGGGTCSSCCCCEEEEEEEEEECTTSSSEEEEEEEEETTSEEEEEEE
T ss_pred CeEEEEeehhHhccccccceEEEEEEEEecCCCCCcceEEEEEecCCcEEEEEE
Confidence 4 22 4565 999999999865 358999999999999998
|
| >1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* | Back alignment and structure |
|---|
Probab=99.97 E-value=1.2e-28 Score=271.04 Aligned_cols=268 Identities=16% Similarity=0.180 Sum_probs=204.6
Q ss_pred eeEEEEecC--CEEEE-ecCCCEEEEeCCCCccccccccccccCCCCCCCCCCeeeeeecCCCeEEEEEcCCCCEEEEEe
Q 003171 134 FLRTIVCTE--EQLWA-GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGH 210 (842)
Q Consensus 134 ~~~~l~~~~--~~l~~-~~D~~vrvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~V~~la~dpdg~~LaSGs 210 (842)
.+.+++... ..|.+ +.|++|++||+.+..... ....+ ..+|.+++|+|++++|++|+
T Consensus 57 ~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~-------------------~~~~~-~~~v~~~~~s~~~~~l~s~~ 116 (340)
T 1got_B 57 KIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVH-------------------AIPLR-SSWVMTCAYAPSGNYVACGG 116 (340)
T ss_dssp CEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEE-------------------EEECS-SSCEEEEEECTTSSEEEEEE
T ss_pred ceEEEEECCCCCEEEEEeCCCcEEEEECCCCCcce-------------------EeecC-CccEEEEEECCCCCEEEEEe
Confidence 466777653 34554 569999999987643221 11233 77899999999999999999
Q ss_pred CCCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCCCEEEeeCCCcEEEEeCCCccceeecCCCceeeeEEEE
Q 003171 211 RDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGDLWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIV 290 (842)
Q Consensus 211 ~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~L~SgS~DgtIrvWd~~t~~~~l~~~~~~~~~~~l~~ 290 (842)
.|++|++|++.++. ........+.+|.+.|.+++|++++.|++|+.|++|++||+.+++....+.
T Consensus 117 ~d~~v~iw~~~~~~----~~~~~~~~~~~h~~~v~~~~~~~~~~l~s~s~d~~i~~wd~~~~~~~~~~~----------- 181 (340)
T 1got_B 117 LDNICSIYNLKTRE----GNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFT----------- 181 (340)
T ss_dssp TTCEEEEEETTTCS----BSCEEEEEEECCSSCEEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEEC-----------
T ss_pred CCCeEEEEECccCC----CcceeEEEecCCCccEEEEEECCCCcEEEEECCCcEEEEECCCCcEEEEEc-----------
Confidence 99999999998752 122345678899999999999999999999999999999997754322221
Q ss_pred eeceeecccceeccceeeeecCCEEEEEEcCCCCEEEEeC-CCcEEEEEccCCcEEEEeecCCceEeeeecccCCCcccc
Q 003171 291 ERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAME 369 (842)
Q Consensus 291 ~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s-~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~~~~ 369 (842)
+| ...+.++++++++..+++++ +++|++||+++++++.++.+|...+..+.
T Consensus 182 --------~h----------~~~v~~~~~~~~~~~l~sg~~d~~v~~wd~~~~~~~~~~~~h~~~v~~v~---------- 233 (340)
T 1got_B 182 --------GH----------TGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAIC---------- 233 (340)
T ss_dssp --------CC----------SSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEE----------
T ss_pred --------CC----------CCceEEEEECCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCcCCEEEEE----------
Confidence 12 44678888888888888877 68999999999999888877665433333
Q ss_pred cceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEeec--C----ccc--cCCCceEEEEECCCCc-EEEEeCCC
Q 003171 370 DEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAK--G----GFG--DDNRRTEALTTSIDGM-IWTGGANG 440 (842)
Q Consensus 370 ~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~--g----~~~--~~~~~v~al~~s~dg~-l~Sgs~Dg 440 (842)
|.+++...++|..++..+++.. + .+. .+...|.+++|+|+|. +++|+.|+
T Consensus 234 ---------------------~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d~ 292 (340)
T 1got_B 234 ---------------------FFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDF 292 (340)
T ss_dssp ---------------------ECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTS
T ss_pred ---------------------EcCCCCEEEEEcCCCcEEEEECCCCcEEEEEccCCcccceEEEEECCCCCEEEEECCCC
Confidence 3333444455556655555541 1 111 1234688999999998 78999999
Q ss_pred eEEEEcC-CCCeeeeeecCCccEEEEEe--cCCEEEEEecCcEEEEEe
Q 003171 441 LLLQWDP-NGNRLQDFQYLPFAVQCLCT--FGSQIWVGYMNGIVQVLD 485 (842)
Q Consensus 441 tIrlWD~-~g~~l~~l~~H~~~V~sls~--dG~~LasGs~DgtIrlWD 485 (842)
+|++||+ +++++.++.+|..+|.++++ +|++|++|+.|++|+|||
T Consensus 293 ~i~vwd~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~i~iWd 340 (340)
T 1got_B 293 NCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp EEEEEETTTCCEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred eEEEEEcccCcEeeEeecCCCcEEEEEEcCCCCEEEEEcCCccEEecC
Confidence 9999999 78999999999999999865 788999999999999997
|
| >4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a | Back alignment and structure |
|---|
Probab=99.97 E-value=1.2e-28 Score=267.25 Aligned_cols=276 Identities=19% Similarity=0.209 Sum_probs=195.1
Q ss_pred CCCeEEEEEcCC-CCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCCC-EEEeeCCCcEEEEe
Q 003171 191 VSSVMCMVGDEA-SGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWP 268 (842)
Q Consensus 191 ~~~V~~la~dpd-g~~LaSGs~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd 268 (842)
.++|.||+|+|+ +++|+|||.||+||+||+.++. .....+...+++|.++|++++|+|+|+ |++|+.|++|++|+
T Consensus 38 ~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~---~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~~~d~~i~~~~ 114 (340)
T 4aow_A 38 NGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDE---TNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWD 114 (340)
T ss_dssp SSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSS---SCSEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred cCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCC---cccceeeEEEeCCCCCEEEEEECCCCCEEEEEcccccceEEe
Confidence 889999999997 6899999999999999998752 111234567899999999999999998 78999999999999
Q ss_pred CCCccceeecCCCceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcCCCCEEEEeC-CCcEEEEEccCCcEEEE
Q 003171 269 WEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKV 347 (842)
Q Consensus 269 ~~t~~~~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s-~~tI~lWD~~tg~~l~~ 347 (842)
............ ....+......+.+..+++++ ++.+++||+........
T Consensus 115 ~~~~~~~~~~~~-----------------------------~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~ 165 (340)
T 4aow_A 115 LTTGTTTRRFVG-----------------------------HTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTV 165 (340)
T ss_dssp TTTTEEEEEEEC-----------------------------CSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEE
T ss_pred ecccceeeeecC-----------------------------CCCceeEEEEeecCccceeecCCCeEEEEEeCCCceEEE
Confidence 865432211110 022344555666677777766 67899999977654322
Q ss_pred -eecCCceEeeeecccCCCcccccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEee--c----CccccCCC
Q 003171 348 -FNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAA--K----GGFGDDNR 420 (842)
Q Consensus 348 -l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~--~----g~~~~~~~ 420 (842)
+..+......+.++.... ....+.+..++..+++. . ..+..|..
T Consensus 166 ~~~~~~~~v~~~~~~~~~~-----------------------------~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~~ 216 (340)
T 4aow_A 166 QDESHSEWVSCVRFSPNSS-----------------------------NPIIVSCGWDKLVKVWNLANCKLKTNHIGHTG 216 (340)
T ss_dssp CSSSCSSCEEEEEECSCSS-----------------------------SCEEEEEETTSCEEEEETTTTEEEEEECCCSS
T ss_pred EeccccCcccceEEccCCC-----------------------------CcEEEEEcCCCEEEEEECCCCceeeEecCCCC
Confidence 222222222222211110 01123344444444443 1 13456788
Q ss_pred ceEEEEECCCCc-EEEEeCCCeEEEEcC-CCCeeeeeecCCccEEEEEec-CCEEEEEecCcEEEEEeCCC-ccc-----
Q 003171 421 RTEALTTSIDGM-IWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQCLCTF-GSQIWVGYMNGIVQVLDLEG-NLL----- 491 (842)
Q Consensus 421 ~v~al~~s~dg~-l~Sgs~DgtIrlWD~-~g~~l~~l~~H~~~V~sls~d-G~~LasGs~DgtIrlWD~~g-~~i----- 491 (842)
.|.+++++|+|. |++|+.|++|++||+ +++++..+.+| ..|.++++. +.++++++.|++|+|||+++ .++
T Consensus 217 ~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~ 295 (340)
T 4aow_A 217 YLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGG-DIINALCFSPNRYWLCAATGPSIKIWDLEGKIIVDELKQ 295 (340)
T ss_dssp CEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEECS-SCEEEEEECSSSSEEEEEETTEEEEEETTTTEEEEEECC
T ss_pred cEEEEEECCCCCEEEEEeCCCeEEEEEeccCceeeeecCC-ceEEeeecCCCCceeeccCCCEEEEEECCCCeEEEeccc
Confidence 899999999997 789999999999999 67888888754 578888763 44666778899999999874 332
Q ss_pred ----ccccccccCEEEEEe--CCCEEEEEcCCCCeeeccccCC
Q 003171 492 ----GGWVAHSSPVIKMAV--GAGYIFTLANHGGIRGWNVTSP 528 (842)
Q Consensus 492 ----~~l~gH~~~V~sla~--dg~~l~S~S~DgtIrvWd~~~~ 528 (842)
....+|...|++|++ |+++|+||+.||+|++||+++.
T Consensus 296 ~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~Dg~v~iW~~~tG 338 (340)
T 4aow_A 296 EVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQVTIG 338 (340)
T ss_dssp C-------CCCCCEEEEEECTTSSEEEEEETTSCEEEEEEEC-
T ss_pred cceeeeccCCCCCEEEEEECCCCCEEEEEeCCCEEEEEeCCCc
Confidence 234589999999984 7889999999999999998764
|
| >2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.4e-29 Score=282.82 Aligned_cols=307 Identities=13% Similarity=0.144 Sum_probs=219.3
Q ss_pred ecCCCEEEEeCCCCccccccccccccCCCCCCCCCCeeeeeecCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCC
Q 003171 148 GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDS 227 (842)
Q Consensus 148 ~~D~~vrvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~V~~la~dpdg~~LaSGs~DGtIrlWdl~~g~~~~ 227 (842)
+.|+.|+|||+.+...... .....+ ..+|.|++|+|++++|++|+.||+|++|++.+..
T Consensus 42 ~~d~~v~iw~~~~~~~~~~-----------------~~~~~~-~~~v~~~~~s~~~~~l~~~~~dg~v~vw~~~~~~--- 100 (416)
T 2pm9_A 42 STDSSLELWSLLAADSEKP-----------------IASLQV-DSKFNDLDWSHNNKIIAGALDNGSLELYSTNEAN--- 100 (416)
T ss_dssp CCCCCCEEEESSSGGGCSC-----------------SCCCCC-SSCEEEEEECSSSSCEEEEESSSCEEEECCSSTT---
T ss_pred CCCCeEEEEEccCCCCCcE-----------------EEEEec-CCceEEEEECCCCCeEEEEccCCeEEEeeccccc---
Confidence 3588999999976432111 111113 6789999999999999999999999999998720
Q ss_pred CCCcceeEEecccCCcEEEEEEecC-CC-EEEeeCCCcEEEEeCCCcc------ceeecCCCceeeeEEEEeeceeeccc
Q 003171 228 DDGFGEVLSWQAHRGPVLSLCISSY-GD-LWSGSEGGGIKIWPWEAIE------KALSLKPEERHTAALIVERSYIDLRS 299 (842)
Q Consensus 228 ~~~~~~~~~l~gH~~~V~slafs~d-G~-L~SgS~DgtIrvWd~~t~~------~~l~~~~~~~~~~~l~~~~s~~~l~~ 299 (842)
........+.+|.++|++++|+|+ +. |++|+.|++|++||+.+.. ..+.... +.+
T Consensus 101 -~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~----------------~~~ 163 (416)
T 2pm9_A 101 -NAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQ----------------SMS 163 (416)
T ss_dssp -SCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCC----------------SCC
T ss_pred -ccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCcccccccccccccc----------------ccC
Confidence 111467788999999999999998 65 7899999999999997754 1111100 001
Q ss_pred ceeccceeeeecCCEEEEEEcCC-CCEEEEeC-CCcEEEEEccCCcEEEEeecCCceEeeeecccCCCcccccceEEEEE
Q 003171 300 HLSVNGFSSILTSDIKNLLSDHS-RAKVWSAG-FLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIV 377 (842)
Q Consensus 300 ~~~~~~~~~~~s~~v~~las~~~-~~~v~s~s-~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~ 377 (842)
| ...+.++++.++ +..+++++ +++|++||+.+++++..+..+....
T Consensus 164 ~----------~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~---------------------- 211 (416)
T 2pm9_A 164 S----------VDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNS---------------------- 211 (416)
T ss_dssp S----------SCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSS----------------------
T ss_pred C----------CCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEecccccc----------------------
Confidence 1 345677888877 56777766 6789999999999888876542100
Q ss_pred ecCCCCccceeeeEeecC-cceEEecCCc---EEEEee--c-----Cccc-cCCCceEEEEECC-CCc-EEEEeCCCeEE
Q 003171 378 TSSKKDKAQSSFGFFQRS-RNAIMGAADA---VRRVAA--K-----GGFG-DDNRRTEALTTSI-DGM-IWTGGANGLLL 443 (842)
Q Consensus 378 s~~~~~~~~~s~~~~~~~-~~~~~g~~~~---v~~v~~--~-----g~~~-~~~~~v~al~~s~-dg~-l~Sgs~DgtIr 443 (842)
........+.|.+++ ...+++..++ ..+++. . ..+. .|...|.+++++| ++. |++|+.|++|+
T Consensus 212 ---~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~ 288 (416)
T 2pm9_A 212 ---GIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVL 288 (416)
T ss_dssp ---CCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTSCSBCCCSCCSSCEEEEEECSSCSSCEEEEESSSEEE
T ss_pred ---ccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCCCcEEeecCccCceeEEEeCCCCCCeEEEEeCCCCEE
Confidence 000011123333333 2334444443 333332 1 1244 5778899999999 776 89999999999
Q ss_pred EEcC-CCCeeeeeecCCccEEEEEe--cC-CEEEEEecCcEEEEEeCC-Ccccccc------------------------
Q 003171 444 QWDP-NGNRLQDFQYLPFAVQCLCT--FG-SQIWVGYMNGIVQVLDLE-GNLLGGW------------------------ 494 (842)
Q Consensus 444 lWD~-~g~~l~~l~~H~~~V~sls~--dG-~~LasGs~DgtIrlWD~~-g~~i~~l------------------------ 494 (842)
+||+ +++++.++.+|...|.++++ ++ .+|++|+.|++|+|||+. ++.....
T Consensus 289 ~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 368 (416)
T 2pm9_A 289 LWNPESAEQLSQFPARGNWCFKTKFAPEAPDLFACASFDNKIEVQTLQNLTNTLDEQETETKQQESETDFWNNVSREESK 368 (416)
T ss_dssp EECSSSCCEEEEEECSSSCCCCEEECTTCTTEEEECCSSSEEEEEESCCCCCSSCC----------------------CC
T ss_pred EeeCCCCccceeecCCCCceEEEEECCCCCCEEEEEecCCcEEEEEccCCCCCcccccccccccCCcccccccccccccc
Confidence 9999 78999999999999998865 67 799999999999999986 3322221
Q ss_pred -----------cccccCEEEEE--eCCCEEEEEcCCCCeeeccccC
Q 003171 495 -----------VAHSSPVIKMA--VGAGYIFTLANHGGIRGWNVTS 527 (842)
Q Consensus 495 -----------~gH~~~V~sla--~dg~~l~S~S~DgtIrvWd~~~ 527 (842)
..|...|.+++ +||+++++++.|++|++|++.+
T Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~~s~dg~~la~~~~d~~v~~w~~~~ 414 (416)
T 2pm9_A 369 EKPSVFHLQAPTWYGEPSPAAHWAFGGKLVQITPDGKGVSITNPKI 414 (416)
T ss_dssp SCCCSSCCCCCSTTCCCSCCCEEETTTEEECBCTTSSCBCCBCCCC
T ss_pred cccccccccCCccccCCccceEEeeCCeEEEEeCCCCeEEEEEecc
Confidence 11666775554 6999999999999999999865
|
| >3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A | Back alignment and structure |
|---|
Probab=99.97 E-value=1.9e-28 Score=274.68 Aligned_cols=322 Identities=16% Similarity=0.161 Sum_probs=232.4
Q ss_pred EecCCEEEE-ecCCCEEEEeCCCCccccccccccccCCCCCCCCCCeeeeeecCCCeEEEEEcCCCCEEEEEeCCCcEEE
Q 003171 139 VCTEEQLWA-GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGHRDGRIMC 217 (842)
Q Consensus 139 ~~~~~~l~~-~~D~~vrvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~V~~la~dpdg~~LaSGs~DGtIrl 217 (842)
..+++.|++ +.|+.|++||+.+...... + .+...+.+.++++++++|++|+.||+|++
T Consensus 65 s~~g~~l~~~~~d~~v~i~d~~~~~~~~~-----------------~----~~~~~~~~~~~~~~~~~l~~~~~dg~i~i 123 (420)
T 3vl1_A 65 EKVGSHLYKARLDGHDFLFNTIIRDGSKM-----------------L----KRADYTAVDTAKLQMRRFILGTTEGDIKV 123 (420)
T ss_dssp EEEETTEEEEEETTEEEEEECCSEETTTT-----------------S----CSCCEEEEEEECSSSCEEEEEETTSCEEE
T ss_pred eecCCeEEEEEcCCcEEEEEecccceeeE-----------------E----ecCCceEEEEEecCCCEEEEEECCCCEEE
Confidence 344555665 5699999999976433211 1 11234555678999999999999999999
Q ss_pred EECCCCccCCCCCcceeEEecccCCcEEEEEEecCCC-EEEeeCCCcEEEEeCCCccceeecCCCceeeeEEEEeeceee
Q 003171 218 WKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYID 296 (842)
Q Consensus 218 Wdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~~t~~~~l~~~~~~~~~~~l~~~~s~~~ 296 (842)
||+.++ +....+.+|.+.|++++|+|+|+ |++|+.|++|++||+.+++....+
T Consensus 124 wd~~~~--------~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~------------------ 177 (420)
T 3vl1_A 124 LDSNFN--------LQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTL------------------ 177 (420)
T ss_dssp ECTTSC--------EEEEETTSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCCCEEE------------------
T ss_pred EeCCCc--------ceeeecccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCceEE------------------
Confidence 999886 56666789999999999999998 789999999999999765432211
Q ss_pred cccceeccceeeeecCCEEEEEEcCCCCEEEEeC-CCcEEEEEccCCcEEEEeecCCc---eEeeeecccCCCcccccce
Q 003171 297 LRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVFNIDGQ---IENRVDMSLLPDFAMEDEF 372 (842)
Q Consensus 297 l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s-~~tI~lWD~~tg~~l~~l~~~~~---~~~~~~~s~~~~~~~~~~~ 372 (842)
++| ...+.++++++++..+++++ +++|++||+++++++..+..+.. ....+.+.+.......
T Consensus 178 -~~h----------~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~--- 243 (420)
T 3vl1_A 178 -IGH----------RATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLH--- 243 (420)
T ss_dssp -ECC----------SSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCG---
T ss_pred -cCC----------CCcEEEEEEcCCCCEEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceee---
Confidence 112 45678888888888888877 67899999999999988865321 2222222221111000
Q ss_pred EEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEee--cC----cc-ccCCCceEEEEECCCCc--EEEEeCCCeEE
Q 003171 373 KTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAA--KG----GF-GDDNRRTEALTTSIDGM--IWTGGANGLLL 443 (842)
Q Consensus 373 ~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~--~g----~~-~~~~~~v~al~~s~dg~--l~Sgs~DgtIr 443 (842)
.. .......+.|.+++...++|..++..+++. .+ .+ ..+...|.+++++|++. +++|+.||+|+
T Consensus 244 -----~~--~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~ 316 (420)
T 3vl1_A 244 -----EI--STSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQTIQLPSKFTCSCNSLTVDGNNANYIYAGYENGMLA 316 (420)
T ss_dssp -----GG--CCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTCCEEEEECCTTSSCEEEEEECSSCTTEEEEEETTSEEE
T ss_pred -----ec--ccCcccceEEcCCCCEEEEEcCCCeEEEEECCCCceeEEcccccCCCceeEEEeCCCCCEEEEEeCCCeEE
Confidence 00 011223456667777778888888777765 11 11 23667899999999985 78999999999
Q ss_pred EEcC-CCC-eeeeeec-CCccEEEEE-ecCCEEEEEecCcEEEEEeCCC----------cccccccccccCEEEEE--eC
Q 003171 444 QWDP-NGN-RLQDFQY-LPFAVQCLC-TFGSQIWVGYMNGIVQVLDLEG----------NLLGGWVAHSSPVIKMA--VG 507 (842)
Q Consensus 444 lWD~-~g~-~l~~l~~-H~~~V~sls-~dG~~LasGs~DgtIrlWD~~g----------~~i~~l~gH~~~V~sla--~d 507 (842)
+||+ +++ .+..+.+ |...|.++. ++|++|++|+.|++|++||+.. .....+.+|.+.|.+++ ++
T Consensus 317 vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~ 396 (420)
T 3vl1_A 317 QWDLRSPECPVGEFLINEGTPINNVYFAAGALFVSSGFDTSIKLDIISDPESERPAIEFETPTFLVSNDDAVSQFCYVSD 396 (420)
T ss_dssp EEETTCTTSCSEEEEESTTSCEEEEEEETTEEEEEETTTEEEEEEEECCTTCCSCEECTTSCEEECCSSCCCCEEEEECC
T ss_pred EEEcCCCcCchhhhhccCCCCceEEEeCCCCEEEEecCCccEEEEeccCCCCCccceeccCccEEccCCcceEEEEEccC
Confidence 9999 564 4777877 677888875 4788999999999999999753 12334668889998887 57
Q ss_pred CC---EEEEEcCCCCeeeccccCC
Q 003171 508 AG---YIFTLANHGGIRGWNVTSP 528 (842)
Q Consensus 508 g~---~l~S~S~DgtIrvWd~~~~ 528 (842)
++ .+++++.++.+++|++..|
T Consensus 397 ~~~~g~l~a~g~~g~~~~~~~~~~ 420 (420)
T 3vl1_A 397 DESNGEVLEVGKNNFCALYNLSNP 420 (420)
T ss_dssp SSSSCEEEEEETTTEEEEEESCC-
T ss_pred CCCcceEEEEcCCceEEEEeccCC
Confidence 77 7888888999999998653
|
| >4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=8.6e-29 Score=273.78 Aligned_cols=239 Identities=14% Similarity=0.053 Sum_probs=179.3
Q ss_pred ceeEEEEecCC-EEEE-ecCCCEEEEeCCCCccccccccccccCCCCCCCCCCeeeeeecCCCeEEEEEcCCCCEEEEEe
Q 003171 133 CFLRTIVCTEE-QLWA-GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGH 210 (842)
Q Consensus 133 ~~~~~l~~~~~-~l~~-~~D~~vrvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~V~~la~dpdg~~LaSGs 210 (842)
..+.+++...+ .|.+ +.|++|||||+.+...... ..+....| .++|.||+|+|+|++|+||+
T Consensus 83 ~~v~~~~~s~d~~l~~~s~dg~v~lWd~~~~~~~~~---------------~~~~~~~H-~~~V~~v~~spdg~~l~sgs 146 (344)
T 4gqb_B 83 AGVADLTWVGERGILVASDSGAVELWELDENETLIV---------------SKFCKYEH-DDIVSTVSVLSSGTQAVSGS 146 (344)
T ss_dssp SCEEEEEEETTTEEEEEETTSEEEEEEECTTSSCEE---------------EEEEEECC-SSCEEEEEECTTSSEEEEEE
T ss_pred CCEEEEEEeCCCeEEEEECCCEEEEEeccCCCceeE---------------eeccccCC-CCCEEEEEECCCCCEEEEEe
Confidence 35777877654 5555 5699999999976543211 01112234 78999999999999999999
Q ss_pred CCCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCCC--EEEeeCCCcEEEEeCCCccceeecCCCceeeeEE
Q 003171 211 RDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD--LWSGSEGGGIKIWPWEAIEKALSLKPEERHTAAL 288 (842)
Q Consensus 211 ~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~--L~SgS~DgtIrvWd~~t~~~~l~~~~~~~~~~~l 288 (842)
.||+||+||+.++ +.+.++.+|.+.|++++|++++. |+|||.|++||+||+.+++....+...
T Consensus 147 ~d~~i~iwd~~~~--------~~~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~------- 211 (344)
T 4gqb_B 147 KDICIKVWDLAQQ--------VVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCS------- 211 (344)
T ss_dssp TTSCEEEEETTTT--------EEEEEECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC---------
T ss_pred CCCeEEEEECCCC--------cEEEEEcCcCCceEEEEecCCCCCceeeeccccccccccccccceeeeeecc-------
Confidence 9999999999997 77889999999999999999985 689999999999999875533222110
Q ss_pred EEeeceeecccceeccceeeeecCCEEEEEEcCC-CCEEEEeC-CCcEEEEEccCCcEEEEeecCCceEeeeecccCCCc
Q 003171 289 IVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHS-RAKVWSAG-FLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDF 366 (842)
Q Consensus 289 ~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~-~~~v~s~s-~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~ 366 (842)
.....+.++++.+. +..+++++ +++|+|||+++++++.++.+
T Consensus 212 --------------------~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~~~~~~~~---------------- 255 (344)
T 4gqb_B 212 --------------------APGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSCVLSSAV---------------- 255 (344)
T ss_dssp ----------------------CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC--CCEEEEC----------------
T ss_pred --------------------eeeccceeeeecCCCCcceEEeccCCcEEEEECCCCcEEEEEcC----------------
Confidence 00224566777764 44666665 67999999998876554432
Q ss_pred ccccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEeecCccccCCCceEEEEECCCCc--EEEEeCCCeEEE
Q 003171 367 AMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGM--IWTGGANGLLLQ 444 (842)
Q Consensus 367 ~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~al~~s~dg~--l~Sgs~DgtIrl 444 (842)
|...|.+++|+|+|. |++|+.|++|++
T Consensus 256 ---------------------------------------------------h~~~v~~v~fsp~g~~~lasgs~D~~i~v 284 (344)
T 4gqb_B 256 ---------------------------------------------------HSQCVTGLVFSPHSVPFLASLSEDCSLAV 284 (344)
T ss_dssp ---------------------------------------------------CSSCEEEEEECSSSSCCEEEEETTSCEEE
T ss_pred ---------------------------------------------------CCCCEEEEEEccCCCeEEEEEeCCCeEEE
Confidence 334466788999873 789999999999
Q ss_pred EcCCCCeeeeeecCCccEEEEEe--cCC-EEEEEecCcEEEEEeCCCc
Q 003171 445 WDPNGNRLQDFQYLPFAVQCLCT--FGS-QIWVGYMNGIVQVLDLEGN 489 (842)
Q Consensus 445 WD~~g~~l~~l~~H~~~V~sls~--dG~-~LasGs~DgtIrlWD~~g~ 489 (842)
||+....+..+.+|.+.|+++++ +|+ .|++|+.|++|++|++..+
T Consensus 285 wd~~~~~~~~~~~H~~~V~~v~~sp~~~~llas~s~D~~v~~w~v~~~ 332 (344)
T 4gqb_B 285 LDSSLSELFRSQAHRDFVRDATWSPLNHSLLTTVGWDHQVVHHVVPTE 332 (344)
T ss_dssp ECTTCCEEEEECCCSSCEEEEEECSSSTTEEEEEETTSCEEEEECCC-
T ss_pred EECCCCcEEEEcCCCCCEEEEEEeCCCCeEEEEEcCCCeEEEEECCCC
Confidence 99954344567899999999975 665 6789999999999998743
|
| >2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A | Back alignment and structure |
|---|
Probab=99.97 E-value=5.7e-29 Score=268.19 Aligned_cols=237 Identities=12% Similarity=0.055 Sum_probs=178.6
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecC--CC-EEEeeCCCcEEEE
Q 003171 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSY--GD-LWSGSEGGGIKIW 267 (842)
Q Consensus 191 ~~~V~~la~dpdg~~LaSGs~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~d--G~-L~SgS~DgtIrvW 267 (842)
..+|.+++|+|+|++|+||+.|++||+|++.++. .+.+.++.||.++|++|+|+++ |+ |+|||.|++||||
T Consensus 9 ~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~------~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iW 82 (297)
T 2pm7_B 9 NEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGET------HKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIW 82 (297)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSC------BCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEE
T ss_pred cCceEEEEECCCCCEEEEEeCCCEEEEEecCCCC------cEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEEE
Confidence 7799999999999999999999999999997531 1456789999999999999864 66 7899999999999
Q ss_pred eCCCccceeecCCCceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcCC--CCEEEEeC-CCcEEEEEccCCcE
Q 003171 268 PWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHS--RAKVWSAG-FLSFALWDARTREL 344 (842)
Q Consensus 268 d~~t~~~~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~--~~~v~s~s-~~tI~lWD~~tg~~ 344 (842)
|+.++.... .. .+.+| ...+.++++.++ +..+++++ +++|++||++++..
T Consensus 83 d~~~~~~~~--------~~---------~~~~h----------~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~ 135 (297)
T 2pm7_B 83 KEENGRWSQ--------IA---------VHAVH----------SASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGT 135 (297)
T ss_dssp EBSSSCBCC--------CE---------EECCC----------SSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSC
T ss_pred EcCCCceEE--------EE---------EeecC----------CCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCc
Confidence 997642110 00 01111 346788888775 66777776 67999999987531
Q ss_pred --EEEeecCCceEeeeecccCCCcccccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEeecCccccCCCce
Q 003171 345 --LKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRT 422 (842)
Q Consensus 345 --l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v 422 (842)
...+..|. ..|
T Consensus 136 ~~~~~~~~h~-------------------------------------------------------------------~~v 148 (297)
T 2pm7_B 136 TSPIIIDAHA-------------------------------------------------------------------IGV 148 (297)
T ss_dssp BCCEEEECCS-------------------------------------------------------------------SCE
T ss_pred eeeeeeeccc-------------------------------------------------------------------Ccc
Confidence 12222222 122
Q ss_pred EEEEECCC-------------C-cEEEEeCCCeEEEEcC-CCC----eeeeeecCCccEEEEEe--c---CCEEEEEecC
Q 003171 423 EALTTSID-------------G-MIWTGGANGLLLQWDP-NGN----RLQDFQYLPFAVQCLCT--F---GSQIWVGYMN 478 (842)
Q Consensus 423 ~al~~s~d-------------g-~l~Sgs~DgtIrlWD~-~g~----~l~~l~~H~~~V~sls~--d---G~~LasGs~D 478 (842)
.+++++|+ + .|++|+.|++|++||+ +++ ++.++.+|..+|+++++ + +.+|++|+.|
T Consensus 149 ~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~D 228 (297)
T 2pm7_B 149 NSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQD 228 (297)
T ss_dssp EEEEECCCC------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETT
T ss_pred ceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCceEEEEEECC
Confidence 22333332 3 4899999999999999 555 66788999999999975 4 3699999999
Q ss_pred cEEEEEeCCC-c--c-cccc--cccccCEEEEEe--CCCEEEEEcCCCCeeeccccC
Q 003171 479 GIVQVLDLEG-N--L-LGGW--VAHSSPVIKMAV--GAGYIFTLANHGGIRGWNVTS 527 (842)
Q Consensus 479 gtIrlWD~~g-~--~-i~~l--~gH~~~V~sla~--dg~~l~S~S~DgtIrvWd~~~ 527 (842)
++|+|||++. . . ...+ .+|.+.|+++++ ++++|++++.|++|++|+...
T Consensus 229 ~~v~iWd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~las~~~D~~v~lw~~~~ 285 (297)
T 2pm7_B 229 RTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENL 285 (297)
T ss_dssp SCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEETTSCEEEEEECT
T ss_pred CcEEEEEeCCCCCccceeeeecccCCCcEEEEEECCCCCEEEEEcCCCcEEEEEECC
Confidence 9999999863 1 1 1233 578999999984 788999999999999999754
|
| >1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 | Back alignment and structure |
|---|
Probab=99.97 E-value=5.4e-29 Score=282.73 Aligned_cols=270 Identities=19% Similarity=0.281 Sum_probs=209.5
Q ss_pred ceeEEEEecCCEEEE-ecCCCEEEEeCCCCccccccccccccCCCCCCCCCCeeeeeecCCCeEEEEEcCCCCEEEEEeC
Q 003171 133 CFLRTIVCTEEQLWA-GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGHR 211 (842)
Q Consensus 133 ~~~~~l~~~~~~l~~-~~D~~vrvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~V~~la~dpdg~~LaSGs~ 211 (842)
..+.++..+++.+.+ +.|+.|++||+.+..... ....| .++|.|+++ ++++|++|+.
T Consensus 134 ~~v~~~~~d~~~l~~g~~dg~i~iwd~~~~~~~~-------------------~~~~h-~~~v~~l~~--~~~~l~sg~~ 191 (435)
T 1p22_A 134 KGVYCLQYDDQKIVSGLRDNTIKIWDKNTLECKR-------------------ILTGH-TGSVLCLQY--DERVIITGSS 191 (435)
T ss_dssp CCEEEEECCSSEEEEEESSSCEEEEESSSCCEEE-------------------EECCC-SSCEEEEEC--CSSEEEEEET
T ss_pred CcEEEEEECCCEEEEEeCCCeEEEEeCCCCeEEE-------------------EEcCC-CCcEEEEEE--CCCEEEEEcC
Confidence 346677777777776 569999999997644321 11123 779999998 6799999999
Q ss_pred CCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCCCEEEeeCCCcEEEEeCCCccceeecCCCceeeeEEEEe
Q 003171 212 DGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGDLWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVE 291 (842)
Q Consensus 212 DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~L~SgS~DgtIrvWd~~t~~~~l~~~~~~~~~~~l~~~ 291 (842)
||+|++||+.++ +....+.+|.+.|.+++|++ +.|++|+.||+|++||+.+....... .
T Consensus 192 dg~i~vwd~~~~--------~~~~~~~~h~~~v~~l~~~~-~~l~s~s~dg~i~vwd~~~~~~~~~~-------~----- 250 (435)
T 1p22_A 192 DSTVRVWDVNTG--------EMLNTLIHHCEAVLHLRFNN-GMMVTCSKDRSIAVWDMASPTDITLR-------R----- 250 (435)
T ss_dssp TSCEEEEESSSC--------CEEEEECCCCSCEEEEECCT-TEEEEEETTSCEEEEECSSSSCCEEE-------E-----
T ss_pred CCeEEEEECCCC--------cEEEEEcCCCCcEEEEEEcC-CEEEEeeCCCcEEEEeCCCCCCceee-------e-----
Confidence 999999999987 67888999999999999975 46899999999999999764321000 0
Q ss_pred eceeecccceeccceeeeecCCEEEEEEcCCCCEEEEeC-CCcEEEEEccCCcEEEEeecCCceEeeeecccCCCccccc
Q 003171 292 RSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMED 370 (842)
Q Consensus 292 ~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s-~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~~~~~ 370 (842)
.+.+| ...+.++.. ++..+++++ +++|++||+.+++++.++..|..
T Consensus 251 ----~~~~~----------~~~v~~~~~--~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~----------------- 297 (435)
T 1p22_A 251 ----VLVGH----------RAAVNVVDF--DDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKR----------------- 297 (435)
T ss_dssp ----EECCC----------SSCEEEEEE--ETTEEEEEETTSEEEEEETTTCCEEEEEECCSS-----------------
T ss_pred ----EecCC----------CCcEEEEEe--CCCEEEEEeCCCeEEEEECCcCcEEEEEcCCCC-----------------
Confidence 01111 345666666 455666665 68999999999988766643321
Q ss_pred ceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEeecCccccCCCceEEEEECCCCcEEEEeCCCeEEEEcC-CC
Q 003171 371 EFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGMIWTGGANGLLLQWDP-NG 449 (842)
Q Consensus 371 ~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~al~~s~dg~l~Sgs~DgtIrlWD~-~g 449 (842)
.+.++.++ +..+++|+.||+|++||+ ++
T Consensus 298 --------------------------------------------------~v~~~~~~-~~~l~~g~~dg~i~iwd~~~~ 326 (435)
T 1p22_A 298 --------------------------------------------------GIACLQYR-DRLVVSGSSDNTIRLWDIECG 326 (435)
T ss_dssp --------------------------------------------------CEEEEEEE-TTEEEEEETTSCEEEEETTTC
T ss_pred --------------------------------------------------cEEEEEeC-CCEEEEEeCCCeEEEEECCCC
Confidence 12233342 345899999999999999 79
Q ss_pred CeeeeeecCCccEEEEEecCCEEEEEecCcEEEEEeCC-Cc---------ccccccccccCEEEEEeCCCEEEEEcCCCC
Q 003171 450 NRLQDFQYLPFAVQCLCTFGSQIWVGYMNGIVQVLDLE-GN---------LLGGWVAHSSPVIKMAVGAGYIFTLANHGG 519 (842)
Q Consensus 450 ~~l~~l~~H~~~V~sls~dG~~LasGs~DgtIrlWD~~-g~---------~i~~l~gH~~~V~sla~dg~~l~S~S~Dgt 519 (842)
+++.++.+|...|.+++++|.+|++|+.||+|++||+. ++ ++..+.+|.+.|.+++++++++++++.||+
T Consensus 327 ~~~~~~~~h~~~v~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~Dg~ 406 (435)
T 1p22_A 327 ACLRVLEGHEELVRCIRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFDEFQIVSSSHDDT 406 (435)
T ss_dssp CEEEEECCCSSCEEEEECCSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEECSSCEEECCSSSE
T ss_pred CEEEEEeCCcCcEEEEEecCCEEEEEeCCCcEEEEECCCCCCccccccchheeeccCCCCCeEEEEeCCCEEEEEeCCCE
Confidence 99999999999999999999999999999999999975 33 688899999999999999999999999999
Q ss_pred eeeccccCCC
Q 003171 520 IRGWNVTSPG 529 (842)
Q Consensus 520 IrvWd~~~~~ 529 (842)
|++||+....
T Consensus 407 i~iwd~~~~~ 416 (435)
T 1p22_A 407 ILIWDFLNDP 416 (435)
T ss_dssp EEEEC-----
T ss_pred EEEEECCCCC
Confidence 9999987643
|
| >1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.97 E-value=8.6e-29 Score=275.77 Aligned_cols=282 Identities=13% Similarity=0.107 Sum_probs=209.6
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCCC-EEEeeCCCcEEEEeC
Q 003171 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPW 269 (842)
Q Consensus 191 ~~~V~~la~dpdg~~LaSGs~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~ 269 (842)
.++|.|++|+|++++|++|+.||+|++|+... .....+.+|..+|++++|+|+++ |++++.|++|++||+
T Consensus 108 ~~~v~~~~~s~~~~~l~~~~~dg~i~i~~~~~---------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~ 178 (425)
T 1r5m_A 108 TNQVTCLAWSHDGNSIVTGVENGELRLWNKTG---------ALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNV 178 (425)
T ss_dssp CBCEEEEEECTTSSEEEEEETTSCEEEEETTS---------CEEEEECCCCSCEEEEEECTTSSEEEEEETTCCEEEEET
T ss_pred CCceEEEEEcCCCCEEEEEeCCCeEEEEeCCC---------CeeeeccCCCccEEEEEECCCCCEEEEEecCCeEEEEEC
Confidence 56899999999999999999999999999443 56788999999999999999998 789999999999999
Q ss_pred CCccceeecCCCceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcCCCCEEEEeCCCcEEEEEccCCcEEEEee
Q 003171 270 EAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGFLSFALWDARTRELLKVFN 349 (842)
Q Consensus 270 ~t~~~~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s~~tI~lWD~~tg~~l~~l~ 349 (842)
.++.....+.......... ....+ ......+.++...+++..+..+.++.|++||+.+++++..+.
T Consensus 179 ~~~~~~~~~~~~~~~~~~~-------~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~ 244 (425)
T 1r5m_A 179 ISGTVMQHFELKETGGSSI-------NAENH-------SGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEKTPTGKLI 244 (425)
T ss_dssp TTTEEEEEECCC-----------------------------CCCBSCCEEEETTEEEEECGGGCEEEEETTCSSCSEEEC
T ss_pred CCCcEEEEeeccccCccce-------eeccc-------cCCcceeeEEEEcCCCEEEEEcCCCeEEEEEcCCCceeeeec
Confidence 7754333222111100000 00000 000011444555555444434446789999999988877765
Q ss_pred cCCceEeeeecccCCCcccccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEee--cC----ccccCCCceE
Q 003171 350 IDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAA--KG----GFGDDNRRTE 423 (842)
Q Consensus 350 ~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~--~g----~~~~~~~~v~ 423 (842)
.+...... +.+.+++...+++..++..+++. .+ .+..+...+.
T Consensus 245 ~~~~~i~~-------------------------------~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~ 293 (425)
T 1r5m_A 245 GHHGPISV-------------------------------LEFNDTNKLLLSASDDGTLRIWHGGNGNSQNCFYGHSQSIV 293 (425)
T ss_dssp CCSSCEEE-------------------------------EEEETTTTEEEEEETTSCEEEECSSSBSCSEEECCCSSCEE
T ss_pred cCCCceEE-------------------------------EEECCCCCEEEEEcCCCEEEEEECCCCccceEecCCCccEE
Confidence 54433222 33444444455666666555553 11 2345778899
Q ss_pred EEEECCCCcEEEEeCCCeEEEEcC-CCCeeeeeecCCccEEEEEe--cCCEEEEEecCcEEEEEeCC-Cc----------
Q 003171 424 ALTTSIDGMIWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQCLCT--FGSQIWVGYMNGIVQVLDLE-GN---------- 489 (842)
Q Consensus 424 al~~s~dg~l~Sgs~DgtIrlWD~-~g~~l~~l~~H~~~V~sls~--dG~~LasGs~DgtIrlWD~~-g~---------- 489 (842)
+++++|++.+++++.|+.|++||+ +++++..+..|...|.++++ +|++|++|+.||.|++||+. ++
T Consensus 294 ~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~ 373 (425)
T 1r5m_A 294 SASWVGDDKVISCSMDGSVRLWSLKQNTLLALSIVDGVPIFAGRISQDGQKYAVAFMDGQVNVYDLKKLNSKSRSLYGNR 373 (425)
T ss_dssp EEEEETTTEEEEEETTSEEEEEETTTTEEEEEEECTTCCEEEEEECTTSSEEEEEETTSCEEEEECHHHHC---------
T ss_pred EEEECCCCEEEEEeCCCcEEEEECCCCcEeEecccCCccEEEEEEcCCCCEEEEEECCCeEEEEECCCCccceeeeeccc
Confidence 999999998899999999999999 78999999999999999865 68999999999999999987 56
Q ss_pred ----------cccccccccc--CEEEEEe--CCCEEEEEcCCCCeeecccc
Q 003171 490 ----------LLGGWVAHSS--PVIKMAV--GAGYIFTLANHGGIRGWNVT 526 (842)
Q Consensus 490 ----------~i~~l~gH~~--~V~sla~--dg~~l~S~S~DgtIrvWd~~ 526 (842)
++..+.+|.. .|.++++ ++++|++++.|++|++|++.
T Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~ 424 (425)
T 1r5m_A 374 DGILNPLPIPLYASYQSSQDNDYIFDLSWNCAGNKISVAYSLQEGSVVAIP 424 (425)
T ss_dssp -----CEECCEEEEECCTTCCCCEEEEEECTTSSEEEEEESSSCCEEEECC
T ss_pred ccccCcccchhhhhhcCcccCCceEEEEccCCCceEEEEecCceEEEEeec
Confidence 7889999977 9999985 78899999999999999974
|
| >1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A | Back alignment and structure |
|---|
Probab=99.97 E-value=7.2e-28 Score=282.86 Aligned_cols=333 Identities=10% Similarity=0.093 Sum_probs=228.5
Q ss_pred eeEEEEecCC---EEEE-ecCCCEEEEeCCCCccccccccccccCCCCCCCCCCeeeeeecCC---CeEEEEEcCC-CCE
Q 003171 134 FLRTIVCTEE---QLWA-GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVS---SVMCMVGDEA-SGV 205 (842)
Q Consensus 134 ~~~~l~~~~~---~l~~-~~D~~vrvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~---~V~~la~dpd-g~~ 205 (842)
.+.+++...+ .+.+ +.|+.|++||+.+...... + ..+ .. +|.|++|+|+ +++
T Consensus 162 ~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~-----------------~--~~~-~~~~~~v~~~~~~~~~~~~ 221 (615)
T 1pgu_A 162 RINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSAS-----------------D--RTH-HKQGSFVRDVEFSPDSGEF 221 (615)
T ss_dssp CEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEE-----------------E--CSS-SCTTCCEEEEEECSTTCCE
T ss_pred cEEEEEECCCCCcEEEEEeCCCcEEEEeCCCcceeee-----------------e--ccc-CCCCceEEEEEECCCCCCE
Confidence 3555555533 3444 5689999999876433211 1 112 55 8999999999 999
Q ss_pred EEEEeCCCcEEEEECCCCccCCCCCcceeEEe-c---ccCCcEEEEEEecCCC-EEEeeCCCcEEEEeCCCccceeecCC
Q 003171 206 VWSGHRDGRIMCWKMNARLLDSDDGFGEVLSW-Q---AHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEKALSLKP 280 (842)
Q Consensus 206 LaSGs~DGtIrlWdl~~g~~~~~~~~~~~~~l-~---gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~~t~~~~l~~~~ 280 (842)
|++|+.||+|++||+.++ +.+..+ . +|.++|++++|+ +++ |++++.|++|++||+.+++....+..
T Consensus 222 l~~~~~dg~i~vwd~~~~--------~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~ 292 (615)
T 1pgu_A 222 VITVGSDRKISCFDGKSG--------EFLKYIEDDQEPVQGGIFALSWL-DSQKFATVGADATIRVWDVTTSKCVQKWTL 292 (615)
T ss_dssp EEEEETTCCEEEEETTTC--------CEEEECCBTTBCCCSCEEEEEES-SSSEEEEEETTSEEEEEETTTTEEEEEEEC
T ss_pred EEEEeCCCeEEEEECCCC--------CEeEEecccccccCCceEEEEEc-CCCEEEEEcCCCcEEEEECCCCcEEEEEcC
Confidence 999999999999999987 667777 6 999999999999 887 78999999999999976543222211
Q ss_pred CceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcCCCCEEEEeC-CCcEEEEEccCCcEEEEeecCCceEeeee
Q 003171 281 EERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVFNIDGQIENRVD 359 (842)
Q Consensus 281 ~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s-~~tI~lWD~~tg~~l~~l~~~~~~~~~~~ 359 (842)
... . ....+..+... ++..+++++ ++.|++||+.+++++..+..|...+..+.
T Consensus 293 ~~~------------------~-------~~~~~~~~~~~-~~~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~v~~~~ 346 (615)
T 1pgu_A 293 DKQ------------------Q-------LGNQQVGVVAT-GNGRIISLSLDGTLNFYELGHDEVLKTISGHNKGITALT 346 (615)
T ss_dssp CTT------------------C-------GGGCEEEEEEE-ETTEEEEEETTSCEEEEETTEEEEEEEECCCSSCEEEEE
T ss_pred CCC------------------c-------ccCceeEEEeC-CCCeEEEEECCCCEEEEECCCCcEEEEEeCCCCCEEEEE
Confidence 100 0 01233344444 455666655 67899999999998888877766555554
Q ss_pred cccCCCccc--c----------------------------------cceEEEEEecCCC---------------------
Q 003171 360 MSLLPDFAM--E----------------------------------DEFKTKIVTSSKK--------------------- 382 (842)
Q Consensus 360 ~s~~~~~~~--~----------------------------------~~~~~~~~s~~~~--------------------- 382 (842)
+ +. .... + .+..+++|.....
T Consensus 347 ~-~~-l~~~~~dg~i~~w~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~s~~~~~~~~~ 424 (615)
T 1pgu_A 347 V-NP-LISGSYDGRIMEWSSSSMHQDHSNLIVSLDNSKAQEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLT 424 (615)
T ss_dssp T-TT-TEEEETTSCEEETTTTEEECCCCSCEEEEECCSTTCCEEEETTTEEEETTEEEEECSSCEEEEEECSSSEEEEEE
T ss_pred e-cC-cEEECCCCeEEEEEchhhcCcccCceEEEEECCCcEEEEEeCCCCEEEEEcccCcccCCceEEEEcCCCCEEEEe
Confidence 4 22 0000 0 0011111111000
Q ss_pred ---------------------CccceeeeEeecCcceEEecC-CcEEEEee--c-----CccccCCCceEEEEECCCCc-
Q 003171 383 ---------------------DKAQSSFGFFQRSRNAIMGAA-DAVRRVAA--K-----GGFGDDNRRTEALTTSIDGM- 432 (842)
Q Consensus 383 ---------------------~~~~~s~~~~~~~~~~~~g~~-~~v~~v~~--~-----g~~~~~~~~v~al~~s~dg~- 432 (842)
......+.+. +...+++.. ++..+++. . ..+..|...|.+++++|+|.
T Consensus 425 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~ 502 (615)
T 1pgu_A 425 NDDDLLILQSFTGDIIKSVRLNSPGSAVSLS--QNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETY 502 (615)
T ss_dssp TTSEEEEEETTTCCEEEEEECSSCEEEEEEC--SSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSE
T ss_pred CCCceEEEeccCCceeeecccCCCceEEEEc--CCEEEEeecCCCeEEEEECCCccccccccCCccCceEEEEECCCCCE
Confidence 0000011111 233444555 55555543 1 23445777889999999987
Q ss_pred EEEEeCCCeEEEEcC-CCCeeeeeec-CCccEEEEEe------------cCCEEEEEecCcEEEEEeCC-C-cccccccc
Q 003171 433 IWTGGANGLLLQWDP-NGNRLQDFQY-LPFAVQCLCT------------FGSQIWVGYMNGIVQVLDLE-G-NLLGGWVA 496 (842)
Q Consensus 433 l~Sgs~DgtIrlWD~-~g~~l~~l~~-H~~~V~sls~------------dG~~LasGs~DgtIrlWD~~-g-~~i~~l~g 496 (842)
|++|+.||.|++||+ +++++.++.+ |...|+++++ +|++|++|+.||+|+|||++ + +++..+.+
T Consensus 503 l~~~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~ 582 (615)
T 1pgu_A 503 IAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNA 582 (615)
T ss_dssp EEEEETTSCEEEEETTTTEEEECCSCCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEETTS
T ss_pred EEEcCCCCeEEEeeCCCCcceeEeecCCCCceeEEEEcCccccccccccCCCEEEEEcCCCcEEEEECCCCceechhhhc
Confidence 788889999999999 7888888887 9999998864 78899999999999999987 4 67888999
Q ss_pred cccCEEEEE--eCCCEEEEEcCCCCeeecccc
Q 003171 497 HSSPVIKMA--VGAGYIFTLANHGGIRGWNVT 526 (842)
Q Consensus 497 H~~~V~sla--~dg~~l~S~S~DgtIrvWd~~ 526 (842)
|.+.|++++ ++++ |++++.|++|++|++.
T Consensus 583 h~~~v~~l~~s~~~~-l~s~~~d~~v~iw~~~ 613 (615)
T 1pgu_A 583 HKDGVNNLLWETPST-LVSSGADACIKRWNVV 613 (615)
T ss_dssp STTCEEEEEEEETTE-EEEEETTSCEEEEEEC
T ss_pred CccceEEEEEcCCCC-eEEecCCceEEEEeee
Confidence 999999887 4777 9999999999999875
|
| >1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A | Back alignment and structure |
|---|
Probab=99.97 E-value=3.2e-27 Score=254.85 Aligned_cols=273 Identities=14% Similarity=0.188 Sum_probs=209.3
Q ss_pred eeEEEEec--CCEEEEecCCCEEEEeCCCCccccccccccccCCCCCCCCCCeeeeeecCCCeEEEEEcCCCCEEEEEeC
Q 003171 134 FLRTIVCT--EEQLWAGGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGHR 211 (842)
Q Consensus 134 ~~~~l~~~--~~~l~~~~D~~vrvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~V~~la~dpdg~~LaSGs~ 211 (842)
.+.+++.. +..|.++.|+.|++||+.+...... ...+....+ ..+|.+++++|++++|++|+.
T Consensus 53 ~v~~~~~~~~~~~l~~~~dg~i~iw~~~~~~~~~~--------------~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~ 117 (337)
T 1gxr_A 53 VVCAVTISNPTRHVYTGGKGCVKVWDISHPGNKSP--------------VSQLDCLNR-DNYIRSCKLLPDGCTLIVGGE 117 (337)
T ss_dssp CCCEEEECSSSSEEEEECBSEEEEEETTSTTCCSC--------------SEEEECSCT-TSBEEEEEECTTSSEEEEEES
T ss_pred ceEEEEEecCCcEEEEcCCCeEEEEECCCCCceee--------------eecccccCC-CCcEEEEEEcCCCCEEEEEcC
Confidence 45556654 4466667799999999976432211 011111122 678999999999999999999
Q ss_pred CCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCCC-EEEeeCCCcEEEEeCCCccceeecCCCceeeeEEEE
Q 003171 212 DGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIV 290 (842)
Q Consensus 212 DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~~t~~~~l~~~~~~~~~~~l~~ 290 (842)
||+|++||+.++. ......+.+|...|++++|+|+++ |++|+.|+.|++||+.+.+....+.
T Consensus 118 d~~i~~~d~~~~~------~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~----------- 180 (337)
T 1gxr_A 118 ASTLSIWDLAAPT------PRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQ----------- 180 (337)
T ss_dssp SSEEEEEECCCC--------EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEEC-----------
T ss_pred CCcEEEEECCCCC------cceeeecccCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeee-----------
Confidence 9999999998862 124567889999999999999997 7899999999999997643222111
Q ss_pred eeceeecccceeccceeeeecCCEEEEEEcCCCCEEEEeC-CCcEEEEEccCCcEEEEeecCCceEeeeecccCCCcccc
Q 003171 291 ERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAME 369 (842)
Q Consensus 291 ~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s-~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~~~~ 369 (842)
+| ...+..++.++++..+++++ ++.|++||+++++.+..+..
T Consensus 181 --------~~----------~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~------------------- 223 (337)
T 1gxr_A 181 --------GH----------TDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDF------------------- 223 (337)
T ss_dssp --------CC----------SSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEEC-------------------
T ss_pred --------cc----------cCceEEEEECCCCCEEEEEecCCcEEEEECCCCceEeeecC-------------------
Confidence 11 34577888888888888876 67899999998876544321
Q ss_pred cceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEeecCccccCCCceEEEEECCCCc-EEEEeCCCeEEEEcCC
Q 003171 370 DEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGM-IWTGGANGLLLQWDPN 448 (842)
Q Consensus 370 ~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~al~~s~dg~-l~Sgs~DgtIrlWD~~ 448 (842)
...+.+++++|++. +++++.|+.|++||+.
T Consensus 224 -------------------------------------------------~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~ 254 (337)
T 1gxr_A 224 -------------------------------------------------TSQIFSLGYCPTGEWLAVGMESSNVEVLHVN 254 (337)
T ss_dssp -------------------------------------------------SSCEEEEEECTTSSEEEEEETTSCEEEEETT
T ss_pred -------------------------------------------------CCceEEEEECCCCCEEEEEcCCCcEEEEECC
Confidence 12245677888887 7899999999999996
Q ss_pred CCeeeeeecCCccEEEEEe--cCCEEEEEecCcEEEEEeCC-CcccccccccccCEEEEEe--CCCEEEEEcCCCCeeec
Q 003171 449 GNRLQDFQYLPFAVQCLCT--FGSQIWVGYMNGIVQVLDLE-GNLLGGWVAHSSPVIKMAV--GAGYIFTLANHGGIRGW 523 (842)
Q Consensus 449 g~~l~~l~~H~~~V~sls~--dG~~LasGs~DgtIrlWD~~-g~~i~~l~gH~~~V~sla~--dg~~l~S~S~DgtIrvW 523 (842)
......+..|...|.++++ +|++|++++.||.|++||++ ++.+ ....|...|.++++ +++++++++.|+.|++|
T Consensus 255 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~-~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw 333 (337)
T 1gxr_A 255 KPDKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASI-FQSKESSSVLSCDISVDDKYIVTGSGDKKATVY 333 (337)
T ss_dssp SSCEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEE-EEEECSSCEEEEEECTTSCEEEEEETTSCEEEE
T ss_pred CCCeEEEcCCccceeEEEECCCCCEEEEecCCCcEEEEECCCCeEE-EEecCCCcEEEEEECCCCCEEEEecCCCeEEEE
Confidence 5455677889999999865 68999999999999999987 5554 34568999999874 78899999999999999
Q ss_pred cc
Q 003171 524 NV 525 (842)
Q Consensus 524 d~ 525 (842)
++
T Consensus 334 ~~ 335 (337)
T 1gxr_A 334 EV 335 (337)
T ss_dssp EE
T ss_pred EE
Confidence 96
|
| >4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=4.2e-28 Score=260.33 Aligned_cols=276 Identities=15% Similarity=0.136 Sum_probs=199.7
Q ss_pred eEEEEecCC-EEEEecCCCEEEEeCCCCccccccccccccCCCCCCCCCCeeeeeecCCCeEEEEEcCCCCEEEEEeCCC
Q 003171 135 LRTIVCTEE-QLWAGGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGHRDG 213 (842)
Q Consensus 135 ~~~l~~~~~-~l~~~~D~~vrvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~V~~la~dpdg~~LaSGs~DG 213 (842)
+..|+-..+ .|.+|.|++|||||++++..... +....| ...|.|++++|++++|+||+.||
T Consensus 28 ~~~l~WS~~~~lAvg~D~tV~iWd~~tg~~~~~-----------------~~~~~~-~~~V~~v~~~~~~~~l~sgs~Dg 89 (318)
T 4ggc_A 28 LNLVDWSSGNVLAVALDNSVYLWSASSGDILQL-----------------LQMEQP-GEYISSVAWIKEGNYLAVGTSSA 89 (318)
T ss_dssp CBCEEECTTSEEEEEETTEEEEEETTTCCEEEE-----------------EECCST-TCCEEEEEECTTSSEEEEEETTS
T ss_pred ceEEEECCCCEEEEEeCCEEEEEECCCCCEEEE-----------------EEecCC-CCeEEEEEECCCCCEEEEEECCC
Confidence 444554444 45558899999999987543211 222222 67899999999999999999999
Q ss_pred cEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCCC-EEEeeCCCcEEEEeCCCccceeecCCCceeeeEEEEee
Q 003171 214 RIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVER 292 (842)
Q Consensus 214 tIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~~t~~~~l~~~~~~~~~~~l~~~~ 292 (842)
+|++|++.++ +.+..+.+|...+.++.+. +. |++|+.++.+++|+..+....+..
T Consensus 90 ~v~iw~~~~~--------~~~~~~~~h~~~~~~~~~~--~~~l~s~~~~~~~~~~~~~~~~~~~~~-------------- 145 (318)
T 4ggc_A 90 EVQLWDVQQQ--------KRLRNMTSHSARVGSLSWN--SYILSSGSRSGHIHHHDVRVAEHHVAT-------------- 145 (318)
T ss_dssp EEEEEETTTT--------EEEEEEECCSSCEEEEEEE--TTEEEEEETTSEEEEEETTSSSCEEEE--------------
T ss_pred cEEEeecCCc--------eeEEEecCccceEEEeecC--CCEEEEEecCCceEeeecCCCceeEEE--------------
Confidence 9999999997 7788899999999877665 45 789999999999998664322110
Q ss_pred ceeecccceeccceeeeecCCEEEEEEcCCCCEEEEeC-CCcEEEEEccCCcEEEEeecCCceEeeeecccCCCcccccc
Q 003171 293 SYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDE 371 (842)
Q Consensus 293 s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s-~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~~~~~~ 371 (842)
+.+| ...+..+...+.+..+++++ +++|++||+++++...... .
T Consensus 146 ----~~~~----------~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~----~----------------- 190 (318)
T 4ggc_A 146 ----LSGH----------SQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPL----Q----------------- 190 (318)
T ss_dssp ----EECC----------SSCEEEEEECTTSSEEEEEETTSCEEEEESSCBTTBSCCS----E-----------------
T ss_pred ----EcCc----------cCceEEEEEcCCCCEEEEEecCcceeEEECCCCcccccce----e-----------------
Confidence 0111 34566777777888888776 6799999998765310000 0
Q ss_pred eEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEeecCccccCCCceEEEEECCCCc----EEEEeCCCeEEEEcC
Q 003171 372 FKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGM----IWTGGANGLLLQWDP 447 (842)
Q Consensus 372 ~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~al~~s~dg~----l~Sgs~DgtIrlWD~ 447 (842)
. ...+...|.++++++++. +++++.+++|++||.
T Consensus 191 ------~------------------------------------~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~ 228 (318)
T 4ggc_A 191 ------T------------------------------------FTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNV 228 (318)
T ss_dssp ------E------------------------------------ECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEET
T ss_pred ------e------------------------------------ecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEec
Confidence 0 011223344555655543 246778899999999
Q ss_pred C-CCeeeeeecCCccEEEEE--ecCCEEEEEe--cCcEEEEEeCC-CcccccccccccCEEEEEe--CCCEEEEEcCCCC
Q 003171 448 N-GNRLQDFQYLPFAVQCLC--TFGSQIWVGY--MNGIVQVLDLE-GNLLGGWVAHSSPVIKMAV--GAGYIFTLANHGG 519 (842)
Q Consensus 448 ~-g~~l~~l~~H~~~V~sls--~dG~~LasGs--~DgtIrlWD~~-g~~i~~l~gH~~~V~sla~--dg~~l~S~S~Dgt 519 (842)
. +..... ..|...|.++. ++++.+++++ .|++|+|||+. ++++.++.+|.+.|++|++ |+++|+|+|.|++
T Consensus 229 ~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~~~~~l~gH~~~V~~l~~spdg~~l~S~s~D~~ 307 (318)
T 4ggc_A 229 CSGACLSA-VDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADET 307 (318)
T ss_dssp TTCCEEEE-EECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTTE
T ss_pred cccccccc-ccceeeeeeeeecccccceEEEEEcCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCe
Confidence 5 444444 45667777664 4677766554 79999999987 7899999999999999985 7889999999999
Q ss_pred eeeccccCCCC
Q 003171 520 IRGWNVTSPGP 530 (842)
Q Consensus 520 IrvWd~~~~~~ 530 (842)
||+||+...+|
T Consensus 308 v~iWd~~~~dP 318 (318)
T 4ggc_A 308 LRLWRCFELDP 318 (318)
T ss_dssp EEEECCSCCCC
T ss_pred EEEEECCCCCC
Confidence 99999876554
|
| >3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.97 E-value=5.1e-28 Score=291.66 Aligned_cols=277 Identities=18% Similarity=0.264 Sum_probs=201.9
Q ss_pred ceeEEEEec--C-CEEEE-ecCCCEEEEeCCCCccccccccccccCCCCCCCCCCeeeeeecCCCeEEEEEcCCCCEEEE
Q 003171 133 CFLRTIVCT--E-EQLWA-GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWS 208 (842)
Q Consensus 133 ~~~~~l~~~--~-~~l~~-~~D~~vrvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~V~~la~dpdg~~LaS 208 (842)
..+++|+.. + +.|.+ +.|++||+||+.+...... ........| ...|.|++++|++++|+|
T Consensus 383 ~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~--------------~~~~~~~~h-~~~v~~v~~s~~g~~l~s 447 (694)
T 3dm0_A 383 DMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYG--------------VAQRRLTGH-SHFVEDVVLSSDGQFALS 447 (694)
T ss_dssp SCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSC--------------EEEEEEECC-SSCEEEEEECTTSSEEEE
T ss_pred ceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccc--------------cccceecCC-CCcEEEEEECCCCCEEEE
Confidence 356677764 2 24444 5699999999965321100 000111233 789999999999999999
Q ss_pred EeCCCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCCC-EEEeeCCCcEEEEeCCCccceeecCCCceeeeE
Q 003171 209 GHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEKALSLKPEERHTAA 287 (842)
Q Consensus 209 Gs~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~~t~~~~l~~~~~~~~~~~ 287 (842)
|+.||+||+||+.++ .....+.+|.+.|++++|+|+|+ |+|||.|++|||||...... ......
T Consensus 448 gs~Dg~v~vwd~~~~--------~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~-~~~~~~------ 512 (694)
T 3dm0_A 448 GSWDGELRLWDLAAG--------VSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECK-YTISEG------ 512 (694)
T ss_dssp EETTSEEEEEETTTT--------EEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEE-EEECSS------
T ss_pred EeCCCcEEEEECCCC--------cceeEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCcc-eeeccC------
Confidence 999999999999987 67788999999999999999997 89999999999999754211 111000
Q ss_pred EEEeeceeecccceeccceeeeecCCEEEEEEcCCC--CEEEEeC-CCcEEEEEccCCcEEEEeecCCceEeeeecccCC
Q 003171 288 LIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSR--AKVWSAG-FLSFALWDARTRELLKVFNIDGQIENRVDMSLLP 364 (842)
Q Consensus 288 l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~--~~v~s~s-~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~ 364 (842)
..+| ...+.++++++++ ..+++++ +++|++||+.+++++.++.
T Consensus 513 ---------~~~h----------~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~--------------- 558 (694)
T 3dm0_A 513 ---------GEGH----------RDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLA--------------- 558 (694)
T ss_dssp ---------TTSC----------SSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTCCEEEEEC---------------
T ss_pred ---------CCCC----------CCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCcEEEEEc---------------
Confidence 0011 3457788887765 3566666 6899999998877654432
Q ss_pred CcccccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEeecCccccCCCceEEEEECCCCc-EEEEeCCCeEE
Q 003171 365 DFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGM-IWTGGANGLLL 443 (842)
Q Consensus 365 ~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~al~~s~dg~-l~Sgs~DgtIr 443 (842)
.|...|.+++++|+|. |++|+.||+|+
T Consensus 559 ----------------------------------------------------~h~~~v~~v~~spdg~~l~sg~~Dg~i~ 586 (694)
T 3dm0_A 559 ----------------------------------------------------GHTGYVSTVAVSPDGSLCASGGKDGVVL 586 (694)
T ss_dssp ----------------------------------------------------CCSSCEEEEEECTTSSEEEEEETTSBCE
T ss_pred ----------------------------------------------------CCCCCEEEEEEeCCCCEEEEEeCCCeEE
Confidence 2334567788999987 78999999999
Q ss_pred EEcC-CCCeeeeeecCCccEEEEEe--cCCEEEEEecCcEEEEEeCC-Ccccccccccc-------------------cC
Q 003171 444 QWDP-NGNRLQDFQYLPFAVQCLCT--FGSQIWVGYMNGIVQVLDLE-GNLLGGWVAHS-------------------SP 500 (842)
Q Consensus 444 lWD~-~g~~l~~l~~H~~~V~sls~--dG~~LasGs~DgtIrlWD~~-g~~i~~l~gH~-------------------~~ 500 (842)
+||+ +++++..+.. ...|.++++ ++.+|+++ .++.|+|||++ ++++..+..|. -.
T Consensus 587 iwd~~~~~~~~~~~~-~~~v~~~~~sp~~~~l~~~-~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 664 (694)
T 3dm0_A 587 LWDLAEGKKLYSLEA-NSVIHALCFSPNRYWLCAA-TEHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIY 664 (694)
T ss_dssp EEETTTTEEEECCBC-SSCEEEEEECSSSSEEEEE-ETTEEEEEETTTTEEEEEECCCCC----------------CCCC
T ss_pred EEECCCCceEEEecC-CCcEEEEEEcCCCcEEEEE-cCCCEEEEECCCCCChhhhccccccccccccccccccCCceeEE
Confidence 9999 7888888765 457888765 56666665 56779999997 55555554322 23
Q ss_pred EEEEE--eCCCEEEEEcCCCCeeeccccC
Q 003171 501 VIKMA--VGAGYIFTLANHGGIRGWNVTS 527 (842)
Q Consensus 501 V~sla--~dg~~l~S~S~DgtIrvWd~~~ 527 (842)
|++++ +||++|+|||.||+||+|++..
T Consensus 665 ~~~l~~spdg~~l~sgs~Dg~i~iW~i~~ 693 (694)
T 3dm0_A 665 CTSLNWSADGSTLFSGYTDGVIRVWGIGR 693 (694)
T ss_dssp EEEEEECTTSSEEEEEETTSEEEEEEC--
T ss_pred eeeEEEcCCCCEEEEEcCCCeEEEEeccC
Confidence 67776 5899999999999999999754
|
| >4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A | Back alignment and structure |
|---|
Probab=99.97 E-value=6.7e-29 Score=276.47 Aligned_cols=284 Identities=8% Similarity=0.070 Sum_probs=202.5
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCC-------cEEEEECCCCccCCCCCc--ceeEEecccCCcEEEEEEecCC--------
Q 003171 191 VSSVMCMVGDEASGVVWSGHRDG-------RIMCWKMNARLLDSDDGF--GEVLSWQAHRGPVLSLCISSYG-------- 253 (842)
Q Consensus 191 ~~~V~~la~dpdg~~LaSGs~DG-------tIrlWdl~~g~~~~~~~~--~~~~~l~gH~~~V~slafs~dG-------- 253 (842)
.-||+|++|+|||++|++|+.|. +|++|++..+.......+ .....|.+|...|.+++++++.
T Consensus 14 g~PV~sv~fs~dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~~~~~~~l~~~~~~v~s~~~~~~~~~~g~~~~ 93 (365)
T 4h5i_A 14 GYPAYGAKFLNNDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFHILSEFALEDNDDSPTAIDASKGIILVGCNEN 93 (365)
T ss_dssp SSCEEEEEEEETTEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEEEEEEEECCTTSCCCCEEEEETTEEEEECCCC
T ss_pred CCCEEEEEEeCCCcEEEEECCCccccCCCCEEEEEEEcCCCcceeeeeeeeeEEEccCCCCceEEEEeCCCEEEEEECCC
Confidence 45999999999999999998654 599999876520000000 1123577899999999887541
Q ss_pred --CEEEeeCCCcEEEEeCCCccceeecCCCceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcCCCCEEEE--e
Q 003171 254 --DLWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWS--A 329 (842)
Q Consensus 254 --~L~SgS~DgtIrvWd~~t~~~~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s--~ 329 (842)
.|++|+.|+++|+|++.+....+... ... ..... ..+...++++++++++..++. +
T Consensus 94 ~~~l~s~~~d~~~r~~~~~~~~~~~~~~------~~~----~~~~~----------~~~~~~~~~v~fSpDg~~la~as~ 153 (365)
T 4h5i_A 94 STKITQGKGNKHLRKFKYDKVNDQLEFL------TSV----DFDAS----------TNADDYTKLVYISREGTVAAIASS 153 (365)
T ss_dssp HHHHHHTSCCCCEEEEEEETTTTEEEEE------EEE----CSSCC----------CCTTCCEEEEEECTTSSCEEEEES
T ss_pred ccEEEEecCCCcEEEEEecCCCceEEEe------eee----ceeec----------CCcccCEEEEEEcCCCCEEEEEEC
Confidence 14567789999999986543222110 000 00000 001235788999999987654 3
Q ss_pred C-CCcEEEEEccCCcEEEEeecCCceEeeeecccCCCcccccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEE
Q 003171 330 G-FLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRR 408 (842)
Q Consensus 330 s-~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~ 408 (842)
+ |++|+|||+.+++++..+..+..+ . .+.|.+++..+..+..+++..
T Consensus 154 ~~d~~i~iwd~~~~~~~~~~~~~~~V-~-------------------------------~v~fspdg~~l~s~s~~~~~~ 201 (365)
T 4h5i_A 154 KVPAIMRIIDPSDLTEKFEIETRGEV-K-------------------------------DLHFSTDGKVVAYITGSSLEV 201 (365)
T ss_dssp CSSCEEEEEETTTTEEEEEEECSSCC-C-------------------------------EEEECTTSSEEEEECSSCEEE
T ss_pred CCCCEEEEeECCCCcEEEEeCCCCce-E-------------------------------EEEEccCCceEEeccceeEEE
Confidence 3 578999999999998877543322 2 234555555555666666666
Q ss_pred Eee-cC------ccccCCCceEEEEECCCCc-EEEEeCCC----eEEEEcC-CCC----eeeeeecCCccEEEEE--ecC
Q 003171 409 VAA-KG------GFGDDNRRTEALTTSIDGM-IWTGGANG----LLLQWDP-NGN----RLQDFQYLPFAVQCLC--TFG 469 (842)
Q Consensus 409 v~~-~g------~~~~~~~~v~al~~s~dg~-l~Sgs~Dg----tIrlWD~-~g~----~l~~l~~H~~~V~sls--~dG 469 (842)
++. .+ ....|...+.+++|+|||. +++++.|+ ++++||+ .+. ..+.+.+|..+|++++ +||
T Consensus 202 ~~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg 281 (365)
T 4h5i_A 202 ISTVTGSCIARKTDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKG 281 (365)
T ss_dssp EETTTCCEEEEECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTS
T ss_pred EEeccCcceeeeecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeecccccceecceeeeeecCCCCCeEeEEECCCC
Confidence 654 12 2334667889999999998 78888887 6899998 443 2456778999999886 589
Q ss_pred CEEEEEecCcEEEEEeCC-Cccccc-ccccccCEEEEEe--CCCEEEEEcCCCCeeecccc
Q 003171 470 SQIWVGYMNGIVQVLDLE-GNLLGG-WVAHSSPVIKMAV--GAGYIFTLANHGGIRGWNVT 526 (842)
Q Consensus 470 ~~LasGs~DgtIrlWD~~-g~~i~~-l~gH~~~V~sla~--dg~~l~S~S~DgtIrvWd~~ 526 (842)
++||+|+.|++|+|||++ ++++.+ +.+|.+.|++|++ ||++|+|+|.|++||||++.
T Consensus 282 ~~lasgs~D~~V~iwd~~~~~~~~~~~~gH~~~V~~v~fSpdg~~laS~S~D~tvrvw~ip 342 (365)
T 4h5i_A 282 ELAVLASNDNSIALVKLKDLSMSKIFKQAHSFAITEVTISPDSTYVASVSAANTIHIIKLP 342 (365)
T ss_dssp CEEEEEETTSCEEEEETTTTEEEEEETTSSSSCEEEEEECTTSCEEEEEETTSEEEEEECC
T ss_pred CceEEEcCCCEEEEEECCCCcEEEEecCcccCCEEEEEECCCCCEEEEEeCCCeEEEEEcC
Confidence 999999999999999997 788876 5899999999984 89999999999999999984
|
| >2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* | Back alignment and structure |
|---|
Probab=99.97 E-value=3.5e-27 Score=268.09 Aligned_cols=297 Identities=17% Similarity=0.249 Sum_probs=224.7
Q ss_pred eEEEEecCCEEEE-ecCCCEEEEeCCCCccccccccccccCCCCCCCCCCeeeeeecCCCeEEEEEcCCCCEEEEEeCCC
Q 003171 135 LRTIVCTEEQLWA-GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGHRDG 213 (842)
Q Consensus 135 ~~~l~~~~~~l~~-~~D~~vrvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~V~~la~dpdg~~LaSGs~DG 213 (842)
+.++..+++.|++ +.|++|++||+.+...... + ..| .++|.|++++ +++|++|+.||
T Consensus 122 ~~~~~~~g~~l~sg~~dg~i~vwd~~~~~~~~~-----------------~--~~h-~~~v~~~~~~--~~~l~s~~~dg 179 (445)
T 2ovr_B 122 ITCLQFCGNRIVSGSDDNTLKVWSAVTGKCLRT-----------------L--VGH-TGGVWSSQMR--DNIIISGSTDR 179 (445)
T ss_dssp EEEEEEETTEEEEEETTSCEEEEETTTCCEEEE-----------------C--CCC-SSCEEEEEEE--TTEEEEEETTS
T ss_pred EEEEEEcCCEEEEEECCCcEEEEECCCCcEEEE-----------------E--cCC-CCCEEEEEec--CCEEEEEeCCC
Confidence 4566777887776 5699999999976543211 1 123 7799999998 57999999999
Q ss_pred cEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCCCEEEeeCCCcEEEEeCCCccceeecCCCceeeeEEEEeec
Q 003171 214 RIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGDLWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERS 293 (842)
Q Consensus 214 tIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~L~SgS~DgtIrvWd~~t~~~~l~~~~~~~~~~~l~~~~s 293 (842)
+|++||+.++ +....+.+|...|.+++|++ ..|++|+.||+|++||+.+++....+.
T Consensus 180 ~i~vwd~~~~--------~~~~~~~~h~~~v~~~~~~~-~~l~s~s~dg~i~~wd~~~~~~~~~~~-------------- 236 (445)
T 2ovr_B 180 TLKVWNAETG--------ECIHTLYGHTSTVRCMHLHE-KRVVSGSRDATLRVWDIETGQCLHVLM-------------- 236 (445)
T ss_dssp CEEEEETTTT--------EEEEEECCCSSCEEEEEEET-TEEEEEETTSEEEEEESSSCCEEEEEE--------------
T ss_pred eEEEEECCcC--------cEEEEECCCCCcEEEEEecC-CEEEEEeCCCEEEEEECCCCcEEEEEc--------------
Confidence 9999999987 67888999999999999964 348999999999999997654322111
Q ss_pred eeecccceeccceeeeecCCEEEEEEcCCCCEEEEeC-CCcEEEEEccCCcEEEEeecCCceEeeeecccCCCcccccce
Q 003171 294 YIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEF 372 (842)
Q Consensus 294 ~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s-~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~ 372 (842)
+| ...+.++.. ++..+++++ +++|++||+.+++++..+..|......+.+
T Consensus 237 -----~~----------~~~v~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~------------ 287 (445)
T 2ovr_B 237 -----GH----------VAAVRCVQY--DGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQF------------ 287 (445)
T ss_dssp -----CC----------SSCEEEEEE--CSSCEEEEETTSCEEEEEGGGTEEEEEECCCSSCEEEEEE------------
T ss_pred -----CC----------cccEEEEEE--CCCEEEEEcCCCEEEEEECCCCcEeEEecCCCCceEEEEE------------
Confidence 11 345666666 345566655 689999999999998888766543322222
Q ss_pred EEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEee--cC----ccccCCCceEEEEECCCCcEEEEeCCCeEEEEc
Q 003171 373 KTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAA--KG----GFGDDNRRTEALTTSIDGMIWTGGANGLLLQWD 446 (842)
Q Consensus 373 ~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~--~g----~~~~~~~~v~al~~s~dg~l~Sgs~DgtIrlWD 446 (842)
++...+++..++..+++. .+ .+..|...+.++.++ +..+++|+.||+|++||
T Consensus 288 ---------------------~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~-~~~l~~~~~dg~i~vwd 345 (445)
T 2ovr_B 288 ---------------------DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELK-DNILVSGNADSTVKIWD 345 (445)
T ss_dssp ---------------------CSSEEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEEEE-TTEEEEEETTSCEEEEE
T ss_pred ---------------------CCCEEEEEeCCCeEEEEECCCCCEEEEEcCCcccEEEEEEe-CCEEEEEeCCCeEEEEE
Confidence 122334455555444443 11 234566677777764 34689999999999999
Q ss_pred C-CCCeeeeeec---CCccEEEEEecCCEEEEEecCcEEEEEeCC-Ccccccc-----cccccCEEEEEe--CCCEEEEE
Q 003171 447 P-NGNRLQDFQY---LPFAVQCLCTFGSQIWVGYMNGIVQVLDLE-GNLLGGW-----VAHSSPVIKMAV--GAGYIFTL 514 (842)
Q Consensus 447 ~-~g~~l~~l~~---H~~~V~sls~dG~~LasGs~DgtIrlWD~~-g~~i~~l-----~gH~~~V~sla~--dg~~l~S~ 514 (842)
+ +++++.++.+ |...|+++++++++|++|+.||+|++||+. ++++..+ .+|.+.|+++++ ++..++++
T Consensus 346 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~la~~ 425 (445)
T 2ovr_B 346 IKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVG 425 (445)
T ss_dssp TTTCCEEEEECSTTSCSSCEEEEEECSSEEEEEETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECSSEEEEEEE
T ss_pred CCCCcEEEEEccCCCCCCCEEEEEECCCEEEEEeCCCeEEEEECCCCceeeeeeccccCCCCceEEEEEecCCEEEEEEc
Confidence 9 7899999886 889999999999999999999999999987 7777766 588999999985 56678999
Q ss_pred cCCCC----eeeccccC
Q 003171 515 ANHGG----IRGWNVTS 527 (842)
Q Consensus 515 S~Dgt----IrvWd~~~ 527 (842)
+.||+ |.+||+..
T Consensus 426 ~~dg~~~~~l~v~df~~ 442 (445)
T 2ovr_B 426 SRNGTEETKLLVLDFDV 442 (445)
T ss_dssp CSSSSSCCEEEEEECCC
T ss_pred ccCCCCccEEEEEECCC
Confidence 99998 99999764
|
| >4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A | Back alignment and structure |
|---|
Probab=99.96 E-value=3.7e-28 Score=274.70 Aligned_cols=279 Identities=15% Similarity=0.165 Sum_probs=206.3
Q ss_pred eEEEEec-CCEEEEecCCCEEEEeCCCCccccccccccccCCCCCCCCCCeeeeeecCCCeEEEEEcCCCCEEEEEeCCC
Q 003171 135 LRTIVCT-EEQLWAGGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGHRDG 213 (842)
Q Consensus 135 ~~~l~~~-~~~l~~~~D~~vrvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~V~~la~dpdg~~LaSGs~DG 213 (842)
+..|+-. .+.|.+|.|++|+|||..++..... +....+ ...|.||+|+|+|++|++|+.||
T Consensus 108 ~~~l~wS~~n~lAvgld~tV~lWd~~tg~~~~~-----------------~~~~~~-~~~V~sv~fspdg~~lasgs~Dg 169 (420)
T 4gga_A 108 LNLVDWSSGNVLAVALDNSVYLWSASSGDILQL-----------------LQMEQP-GEYISSVAWIKEGNYLAVGTSSA 169 (420)
T ss_dssp CBCEEECTTSEEEEEETTEEEEEETTTCCEEEE-----------------EECCST-TCCEEEEEECTTSSEEEEEETTS
T ss_pred ceeEEECCCCEEEEEeCCEEEEEECCCCCEEEE-----------------EEecCC-CCcEEEEEECCCCCEEEEEECCC
Confidence 3334433 3455568899999999987543211 111122 66899999999999999999999
Q ss_pred cEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCCCEEEeeCCCcEEEEeCCCccceeecCCCceeeeEEEEeec
Q 003171 214 RIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGDLWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERS 293 (842)
Q Consensus 214 tIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~L~SgS~DgtIrvWd~~t~~~~l~~~~~~~~~~~l~~~~s 293 (842)
+|++||+.++ +.+..+.+|...|.++++++ ..|++|+.|+++++||.......+. .
T Consensus 170 ~v~iWd~~~~--------~~~~~~~~h~~~v~~~s~~~-~~l~sgs~d~~i~~~d~~~~~~~~~---------~------ 225 (420)
T 4gga_A 170 EVQLWDVQQQ--------KRLRNMTSHSARVGSLSWNS-YILSSGSRSGHIHHHDVRVAEHHVA---------T------ 225 (420)
T ss_dssp CEEEEETTTT--------EEEEEECCCSSCEEEEEEET-TEEEEEETTSEEEEEETTSSSCEEE---------E------
T ss_pred eEEEEEcCCC--------cEEEEEeCCCCceEEEeeCC-CEEEEEeCCCceeEeeecccceeeE---------E------
Confidence 9999999997 77888999999999988754 2378999999999999865322111 0
Q ss_pred eeecccceeccceeeeecCCEEEEEEcCCCCEEEEeC-CCcEEEEEccCCcEEEEeecCCceEeeeecccCCCcccccce
Q 003171 294 YIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEF 372 (842)
Q Consensus 294 ~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s-~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~ 372 (842)
+.+| ...+..+...+.+..+++++ |+.+++||..+++.... ..
T Consensus 226 ---~~~h----------~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~~~~~~-----~~------------------ 269 (420)
T 4gga_A 226 ---LSGH----------SQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWV-----PL------------------ 269 (420)
T ss_dssp ---EECC----------SSCEEEEEECTTSSEEEEEETTSCEEEEESSCCSSCSC-----CS------------------
T ss_pred ---eccc----------ccceeeeeecCCCCeeeeeeccccceEEeeccccccce-----ee------------------
Confidence 1112 34566777788888888776 67899999987542000 00
Q ss_pred EEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEeecCccccCCCceEEEEECCCCc--EEE--EeCCCeEEEEcC-
Q 003171 373 KTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGM--IWT--GGANGLLLQWDP- 447 (842)
Q Consensus 373 ~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~al~~s~dg~--l~S--gs~DgtIrlWD~- 447 (842)
. .+..+...|.+++++|++. +++ |+.|++|++||+
T Consensus 270 ~----------------------------------------~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~ 309 (420)
T 4gga_A 270 Q----------------------------------------TFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVC 309 (420)
T ss_dssp E----------------------------------------EECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETT
T ss_pred e----------------------------------------eecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCC
Confidence 0 0123445567788888654 444 457999999999
Q ss_pred CCCeeeeeecCCccEEEE--EecCCEEEEEe--cCcEEEEEeCC-CcccccccccccCEEEEEe--CCCEEEEEcCCCCe
Q 003171 448 NGNRLQDFQYLPFAVQCL--CTFGSQIWVGY--MNGIVQVLDLE-GNLLGGWVAHSSPVIKMAV--GAGYIFTLANHGGI 520 (842)
Q Consensus 448 ~g~~l~~l~~H~~~V~sl--s~dG~~LasGs--~DgtIrlWD~~-g~~i~~l~gH~~~V~sla~--dg~~l~S~S~DgtI 520 (842)
+++++..+..|. .|.++ .++++.|++++ .|++|+|||+. ++++.++.||.+.|++|++ ||++|+|||.|++|
T Consensus 310 t~~~~~~~~~~~-~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~v~~l~gH~~~V~~l~~spdg~~l~S~s~D~tv 388 (420)
T 4gga_A 310 SGACLSAVDAHS-QVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETL 388 (420)
T ss_dssp TTEEEEEEECSS-CEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTTEE
T ss_pred ccccceeecccc-ceeeeeecCCCCeEEEEEecCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeE
Confidence 788888887665 45555 45788877765 79999999987 7899999999999999984 88999999999999
Q ss_pred eeccccCCCCCc
Q 003171 521 RGWNVTSPGPLD 532 (842)
Q Consensus 521 rvWd~~~~~~~d 532 (842)
|+||+....|..
T Consensus 389 riWdv~~~~~~~ 400 (420)
T 4gga_A 389 RLWRCFELDPAR 400 (420)
T ss_dssp EEECCSCSSCC-
T ss_pred EEEECCCCCccc
Confidence 999987766544
|
| >3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A | Back alignment and structure |
|---|
Probab=99.96 E-value=7e-29 Score=270.10 Aligned_cols=252 Identities=13% Similarity=0.060 Sum_probs=177.5
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecC--CC-EEEeeCCCcEEEE
Q 003171 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSY--GD-LWSGSEGGGIKIW 267 (842)
Q Consensus 191 ~~~V~~la~dpdg~~LaSGs~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~d--G~-L~SgS~DgtIrvW 267 (842)
..+|.|++|+|+|++|+||+.|++||+||+.++. ...+..+.||.++|++|+|+++ |+ |+|||.|++|++|
T Consensus 13 ~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~------~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iW 86 (316)
T 3bg1_A 13 EDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGG------QILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIW 86 (316)
T ss_dssp -CCEEEEEECGGGCEEEEEETTTEEEEEEEETTE------EEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEE
T ss_pred cCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCC------cEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEE
Confidence 7899999999999999999999999999998752 0245678999999999999863 65 8999999999999
Q ss_pred eCCCccceeecCCCceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcCC--CCEEEEeC-CCcEEEEEccCCcE
Q 003171 268 PWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHS--RAKVWSAG-FLSFALWDARTREL 344 (842)
Q Consensus 268 d~~t~~~~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~--~~~v~s~s-~~tI~lWD~~tg~~ 344 (842)
|+.++..... . .+.+| ...+.+++++++ +..+++++ |++|++||+.++..
T Consensus 87 d~~~~~~~~~--------~---------~~~~h----------~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~ 139 (316)
T 3bg1_A 87 REENGTWEKS--------H---------EHAGH----------DSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQ 139 (316)
T ss_dssp CCSSSCCCEE--------E---------EECCC----------SSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSC
T ss_pred ECCCCcceEE--------E---------EccCC----------CCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCC
Confidence 9976421100 0 01112 345777888775 56777777 67999999987632
Q ss_pred EE---EeecCCceEeeeecccCCCcccccceEEEEEecCCCCccceeeeEeecCc-ceEEecCCcEEEEeecCccccCCC
Q 003171 345 LK---VFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSR-NAIMGAADAVRRVAAKGGFGDDNR 420 (842)
Q Consensus 345 l~---~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~-~~~~g~~~~v~~v~~~g~~~~~~~ 420 (842)
.. .+..|..... .+.|.+... ..+..+. .+.
T Consensus 140 ~~~~~~~~~h~~~v~-------------------------------~~~~~~~~~~~~~~~~~--------~~~------ 174 (316)
T 3bg1_A 140 WEVKKINNAHTIGCN-------------------------------AVSWAPAVVPGSLIDHP--------SGQ------ 174 (316)
T ss_dssp EEECCBTTSSSSCBC-------------------------------CCEECCCCCC------C--------CSC------
T ss_pred cceeeeeccccCCcc-------------------------------eEEEccccCCccccccc--------ccc------
Confidence 11 1111111100 111111100 0000000 000
Q ss_pred ceEEEEECCCC-cEEEEeCCCeEEEEcCC-C---CeeeeeecCCccEEEEEe--cC----CEEEEEecCcEEEEEeCCC-
Q 003171 421 RTEALTTSIDG-MIWTGGANGLLLQWDPN-G---NRLQDFQYLPFAVQCLCT--FG----SQIWVGYMNGIVQVLDLEG- 488 (842)
Q Consensus 421 ~v~al~~s~dg-~l~Sgs~DgtIrlWD~~-g---~~l~~l~~H~~~V~sls~--dG----~~LasGs~DgtIrlWD~~g- 488 (842)
...++ .|++|+.|++|++||+. + +++.++.+|..+|+++++ ++ ++|++|+.|++|+|||++.
T Consensus 175 ------~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~las~s~D~~v~iw~~~~~ 248 (316)
T 3bg1_A 175 ------KPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDDA 248 (316)
T ss_dssp ------CCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSSCSCCEEEEEETTCEEEEEECSST
T ss_pred ------CccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCceEEEEecCCCCCCCceEEEEcCCCeEEEEEccCc
Confidence 01123 58999999999999994 4 467889999999999975 44 7899999999999999863
Q ss_pred ---c-ccccccccccCEEEEEe--CCCEEEEEcCCCCeeecccc
Q 003171 489 ---N-LLGGWVAHSSPVIKMAV--GAGYIFTLANHGGIRGWNVT 526 (842)
Q Consensus 489 ---~-~i~~l~gH~~~V~sla~--dg~~l~S~S~DgtIrvWd~~ 526 (842)
+ ....+.+|.+.|+++++ ++++|++++.|++|++|+..
T Consensus 249 ~~~~~~~~~~~~~~~~v~~v~~sp~g~~las~~~D~~v~lw~~~ 292 (316)
T 3bg1_A 249 SSNTWSPKLLHKFNDVVWHVSWSITANILAVSGGDNKVTLWKES 292 (316)
T ss_dssp TCCCCBCCEEEECSSCEEEEEECTTTCCEEEEESSSCEEEEEEC
T ss_pred cccchhhhhhhcCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEEC
Confidence 1 23456789999999985 78899999999999999964
|
| >4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis} | Back alignment and structure |
|---|
Probab=99.96 E-value=4.3e-28 Score=268.99 Aligned_cols=280 Identities=11% Similarity=0.065 Sum_probs=193.3
Q ss_pred CCCCcccccccCCCccc--ccccccccCCCCCCCceeecCCCCCccccCceeEEEEecCC-EEEE-ecCCCEEEEeCCCC
Q 003171 86 SSSSLPEYIGKGGDIPM--FKPPVRAALHPARPPSLEVKPHPLRETQIGCFLRTIVCTEE-QLWA-GGENGLRVWNLKEL 161 (842)
Q Consensus 86 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~l~~-~~D~~vrvWdl~~~ 161 (842)
.++|-+++|..|+...+ +...++.+-.+...+..++... .. +....+.+++...+ .+++ +.|++|+|||+.+.
T Consensus 49 ~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~~-~~--~~~~~V~~~~~s~d~~~l~~s~dg~v~lWd~~~~ 125 (357)
T 4g56_B 49 RYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNESLCTA-GV--QTEAGVTDVAWVSEKGILVASDSGAVELWEILEK 125 (357)
T ss_dssp EECSSSCEEEEEECSSSSSCCEEEEEESSCC---CGGGCSE-EE--ECSSCEEEEEEETTTEEEEEETTSCEEEC-----
T ss_pred EECCCCCEEEEEcCCCCccccCeEEEEECCCCCcceeEecc-cC--CCCCCEEEEEEcCCCCEEEEECCCEEEEeecccc
Confidence 46888999988776432 2334444433322221111111 11 11224667776544 4444 77999999999765
Q ss_pred ccccccccccccCCCCCCCCCCeeeeeecCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEecccC
Q 003171 162 YDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHR 241 (842)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~V~~la~dpdg~~LaSGs~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~ 241 (842)
.... ...+....| .++|.||+|+|++++|+||+.||+|++||+.++ +.+..+++|.
T Consensus 126 ~~~~---------------~~~~~~~~h-~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~--------~~~~~~~~h~ 181 (357)
T 4g56_B 126 ESLL---------------VNKFAKYEH-DDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQK--------AVLKSYNAHS 181 (357)
T ss_dssp ---C---------------CCCEEECCC-SSCEEEEEECSSSSEEEEEETTSCEEEEETTTT--------EEEEEECCCS
T ss_pred ceeE---------------EEeeccCCC-CCCEEEEEECCCCCEEEEEeCCCeEEEEECCCC--------cEEEEEcCCC
Confidence 4321 112222234 789999999999999999999999999999987 6788899999
Q ss_pred CcEEEEEEecCCC--EEEeeCCCcEEEEeCCCccceeecCCCceeeeEEEEeeceeecccceeccceeeeecCCEEEEEE
Q 003171 242 GPVLSLCISSYGD--LWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLS 319 (842)
Q Consensus 242 ~~V~slafs~dG~--L~SgS~DgtIrvWd~~t~~~~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las 319 (842)
+.|++|+|++++. +++++.|++|++||+.+++........ .+ ...+.++++
T Consensus 182 ~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~-----------------~~----------~~~v~~v~~ 234 (357)
T 4g56_B 182 SEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDFC-----------------AS----------DTIPTSVTW 234 (357)
T ss_dssp SCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBCCCT-----------------TC----------CSCEEEEEE
T ss_pred CCEEEEEEccCCCceeeeeccCCceEEEECCCCceeeeeeec-----------------cc----------cccccchhh
Confidence 9999999999875 789999999999999775432211110 00 234667787
Q ss_pred cCCC-CEEEEeC-CCcEEEEEccCCcEEEEeecCCceEeeeecccCCCcccccceEEEEEecCCCCccceeeeEeecCcc
Q 003171 320 DHSR-AKVWSAG-FLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRN 397 (842)
Q Consensus 320 ~~~~-~~v~s~s-~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~ 397 (842)
++++ ..+++++ +++|++||+++++++.++.
T Consensus 235 sp~~~~~la~g~~d~~i~~wd~~~~~~~~~~~------------------------------------------------ 266 (357)
T 4g56_B 235 HPEKDDTFACGDETGNVSLVNIKNPDSAQTSA------------------------------------------------ 266 (357)
T ss_dssp CTTSTTEEEEEESSSCEEEEESSCGGGCEEEC------------------------------------------------
T ss_pred hhcccceEEEeecccceeEEECCCCcEeEEEe------------------------------------------------
Confidence 7654 4666665 6789999998877644432
Q ss_pred eEEecCCcEEEEeecCccccCCCceEEEEECCCC-c-EEEEeCCCeEEEEcC-CCCeeeeeecCCccEEEEEe---cCCE
Q 003171 398 AIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDG-M-IWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQCLCT---FGSQ 471 (842)
Q Consensus 398 ~~~g~~~~v~~v~~~g~~~~~~~~v~al~~s~dg-~-l~Sgs~DgtIrlWD~-~g~~l~~l~~H~~~V~sls~---dG~~ 471 (842)
.+...|.+++|+|++ + |++|+.|++|++||+ ++++++.+ +|...|+++++ ++++
T Consensus 267 -------------------~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~~~~~-~H~~~V~~vafsP~d~~~ 326 (357)
T 4g56_B 267 -------------------VHSQNITGLAYSYHSSPFLASISEDCTVAVLDADFSEVFRDL-SHRDFVTGVAWSPLDHSK 326 (357)
T ss_dssp -------------------CCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTSCEEEEEC-CCSSCEEEEEECSSSTTE
T ss_pred -------------------ccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCcEeEEC-CCCCCEEEEEEeCCCCCE
Confidence 223446678899886 3 789999999999999 57766654 89999999974 6889
Q ss_pred EEEEecCcEEEEEeCC
Q 003171 472 IWVGYMNGIVQVLDLE 487 (842)
Q Consensus 472 LasGs~DgtIrlWD~~ 487 (842)
|++|+.||+|++||+.
T Consensus 327 l~s~s~Dg~v~iW~~~ 342 (357)
T 4g56_B 327 FTTVGWDHKVLHHHLP 342 (357)
T ss_dssp EEEEETTSCEEEEECC
T ss_pred EEEEcCCCeEEEEECC
Confidence 9999999999999985
|
| >3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* | Back alignment and structure |
|---|
Probab=99.96 E-value=1.6e-27 Score=271.59 Aligned_cols=288 Identities=13% Similarity=0.128 Sum_probs=208.9
Q ss_pred eEEEEecCCEEEE-ecCCCEEEEeCCCCccccccccccccCCCCCCCCCCeeeeeecCCCeEEEEEcCCCCEEEEEeCCC
Q 003171 135 LRTIVCTEEQLWA-GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGHRDG 213 (842)
Q Consensus 135 ~~~l~~~~~~l~~-~~D~~vrvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~V~~la~dpdg~~LaSGs~DG 213 (842)
+.++..+++.|.+ +.|++|++||+.+...... ...| .++|.|++++|++ +|+||+.||
T Consensus 125 ~~~~~~~~~~l~sgs~dg~i~vwd~~~~~~~~~-------------------~~~h-~~~V~~l~~~~~~-~l~s~s~dg 183 (464)
T 3v7d_B 125 ITCLQFEDNYVITGADDKMIRVYDSINKKFLLQ-------------------LSGH-DGGVWALKYAHGG-ILVSGSTDR 183 (464)
T ss_dssp EEEEEEETTEEEEEETTSCEEEEETTTTEEEEE-------------------ECCC-SSCEEEEEECSTT-EEEEEETTS
T ss_pred EEEEEECCCEEEEEcCCCcEEEEECCCCcEEEE-------------------EeCC-CcCEEEEEEcCCC-EEEEEeCCC
Confidence 4566677777776 5699999999976543211 1123 7899999999877 999999999
Q ss_pred cEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEec--CCC-EEEeeCCCcEEEEeCCCccceeecCCCceeeeEEEE
Q 003171 214 RIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISS--YGD-LWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIV 290 (842)
Q Consensus 214 tIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~--dG~-L~SgS~DgtIrvWd~~t~~~~l~~~~~~~~~~~l~~ 290 (842)
+|++||+.++ +....+.+|.++|++++|++ ++. |++|+.|++|++||+.+................. .
T Consensus 184 ~i~vwd~~~~--------~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~-~ 254 (464)
T 3v7d_B 184 TVRVWDIKKG--------CCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVF-H 254 (464)
T ss_dssp CEEEEETTTT--------EEEEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEE-S
T ss_pred CEEEEECCCC--------cEEEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEe-e
Confidence 9999999987 67888999999999999995 555 7899999999999997643221111000000000 0
Q ss_pred eec-----eeecccceeccceeeeecCCEEEEEEcCCCCEEEEeC-CCcEEEEEccCCcEEEEeecCCceEeeeecccCC
Q 003171 291 ERS-----YIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVFNIDGQIENRVDMSLLP 364 (842)
Q Consensus 291 ~~s-----~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s-~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~ 364 (842)
... ...+.+ +...+.++. +++..+++++ +++|++||+.+++++..+.+
T Consensus 255 ~~~~~~~~~~~~~~----------~~~~v~~~~--~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~-------------- 308 (464)
T 3v7d_B 255 TPEENPYFVGVLRG----------HMASVRTVS--GHGNIVVSGSYDNTLIVWDVAQMKCLYILSG-------------- 308 (464)
T ss_dssp CGGGCTTEEEEECC----------CSSCEEEEE--EETTEEEEEETTSCEEEEETTTTEEEEEECC--------------
T ss_pred ccCCCeEEEEEccC----------ccceEEEEc--CCCCEEEEEeCCCeEEEEECCCCcEEEEecC--------------
Confidence 000 000111 133444543 3456677666 68999999998887655432
Q ss_pred CcccccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEeecCccccCCCceEEEEECCCCc-EEEEeCCCeEE
Q 003171 365 DFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGM-IWTGGANGLLL 443 (842)
Q Consensus 365 ~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~al~~s~dg~-l~Sgs~DgtIr 443 (842)
|...|.+++++|++. +++|+.||+|+
T Consensus 309 -----------------------------------------------------~~~~v~~~~~~~~~~~l~sg~~dg~i~ 335 (464)
T 3v7d_B 309 -----------------------------------------------------HTDRIYSTIYDHERKRCISASMDTTIR 335 (464)
T ss_dssp -----------------------------------------------------CSSCEEEEEEETTTTEEEEEETTSCEE
T ss_pred -----------------------------------------------------CCCCEEEEEEcCCCCEEEEEeCCCcEE
Confidence 223455677888876 89999999999
Q ss_pred EEcC-CCCeeeeeecCCccEEEEEecCCEEEEEecCcEEEEEeCC-Ccccccc-cccccCEEEEEeCCCEEEEEcCCCCe
Q 003171 444 QWDP-NGNRLQDFQYLPFAVQCLCTFGSQIWVGYMNGIVQVLDLE-GNLLGGW-VAHSSPVIKMAVGAGYIFTLANHGGI 520 (842)
Q Consensus 444 lWD~-~g~~l~~l~~H~~~V~sls~dG~~LasGs~DgtIrlWD~~-g~~i~~l-~gH~~~V~sla~dg~~l~S~S~DgtI 520 (842)
+||+ +++++.++.+|...|.++++++++|++|+.||+|++||+. ++..... ..+...+.++.++++.+++++ |++|
T Consensus 336 vwd~~~~~~~~~~~~h~~~v~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-dg~i 414 (464)
T 3v7d_B 336 IWDLENGELMYTLQGHTALVGLLRLSDKFLVSAAADGSIRGWDANDYSRKFSYHHTNLSAITTFYVSDNILVSGS-ENQF 414 (464)
T ss_dssp EEETTTTEEEEEECCCSSCEEEEEECSSEEEEEETTSEEEEEETTTCCEEEEEECTTCCCEEEEEECSSEEEEEE-TTEE
T ss_pred EEECCCCcEEEEEeCCCCcEEEEEEcCCEEEEEeCCCcEEEEECCCCceeeeecCCCCccEEEEEeCCCEEEEec-CCeE
Confidence 9999 7999999999999999999999999999999999999997 4433322 223334555668999999998 9999
Q ss_pred eeccccCCCCCc
Q 003171 521 RGWNVTSPGPLD 532 (842)
Q Consensus 521 rvWd~~~~~~~d 532 (842)
++||+.+...+.
T Consensus 415 ~iwd~~~g~~~~ 426 (464)
T 3v7d_B 415 NIYNLRSGKLVH 426 (464)
T ss_dssp EEEETTTCCEEE
T ss_pred EEEECCCCcEEe
Confidence 999998765543
|
| >1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=99.96 E-value=5.2e-28 Score=271.42 Aligned_cols=234 Identities=22% Similarity=0.325 Sum_probs=187.0
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEecccC------------------CcEEEEEEecC
Q 003171 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHR------------------GPVLSLCISSY 252 (842)
Q Consensus 191 ~~~V~~la~dpdg~~LaSGs~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~------------------~~V~slafs~d 252 (842)
.++|.|++|+|+|++|++|+ |+++++|++.++ +.+..+.+|. ..|++++|+|+
T Consensus 64 ~~~V~~v~fspdg~~la~g~-~~~v~i~~~~~g--------~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d 134 (393)
T 1erj_A 64 TSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDG--------SLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPD 134 (393)
T ss_dssp SSCCCEEEECTTSSEEEEEC-BSCEEEEETTTC--------CEEEEECC-----------------CCCCBEEEEEECTT
T ss_pred CCEEEEEEECCCCCEEEEEc-CCcEEEEEecCC--------CEEEEecCccccccccccccccccCCCceeEEEEEECCC
Confidence 78999999999999999987 789999999887 4555565553 24999999999
Q ss_pred CC-EEEeeCCCcEEEEeCCCccceeecCCCceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcCCCCEEEEeC-
Q 003171 253 GD-LWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG- 330 (842)
Q Consensus 253 G~-L~SgS~DgtIrvWd~~t~~~~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s- 330 (842)
|+ |++|+.|++|+|||+.+++....+ .+| ...+.++++.+++..+++++
T Consensus 135 g~~l~s~~~d~~i~iwd~~~~~~~~~~-------------------~~h----------~~~v~~~~~~p~~~~l~s~s~ 185 (393)
T 1erj_A 135 GKFLATGAEDRLIRIWDIENRKIVMIL-------------------QGH----------EQDIYSLDYFPSGDKLVSGSG 185 (393)
T ss_dssp SSEEEEEETTSCEEEEETTTTEEEEEE-------------------CCC----------SSCEEEEEECTTSSEEEEEET
T ss_pred CCEEEEEcCCCeEEEEECCCCcEEEEE-------------------ccC----------CCCEEEEEEcCCCCEEEEecC
Confidence 98 789999999999999765322211 122 45678888888888888877
Q ss_pred CCcEEEEEccCCcEEEEeecCCceEeeeecccCCCcccccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEe
Q 003171 331 FLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVA 410 (842)
Q Consensus 331 ~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~ 410 (842)
|++|++||++++++..++..+
T Consensus 186 d~~v~iwd~~~~~~~~~~~~~----------------------------------------------------------- 206 (393)
T 1erj_A 186 DRTVRIWDLRTGQCSLTLSIE----------------------------------------------------------- 206 (393)
T ss_dssp TSEEEEEETTTTEEEEEEECS-----------------------------------------------------------
T ss_pred CCcEEEEECCCCeeEEEEEcC-----------------------------------------------------------
Confidence 689999999998875544211
Q ss_pred ecCccccCCCceEEEEECC-CCc-EEEEeCCCeEEEEcC-CCCeeeee-------ecCCccEEEEEe--cCCEEEEEecC
Q 003171 411 AKGGFGDDNRRTEALTTSI-DGM-IWTGGANGLLLQWDP-NGNRLQDF-------QYLPFAVQCLCT--FGSQIWVGYMN 478 (842)
Q Consensus 411 ~~g~~~~~~~~v~al~~s~-dg~-l~Sgs~DgtIrlWD~-~g~~l~~l-------~~H~~~V~sls~--dG~~LasGs~D 478 (842)
..+.+++++| +|. +++|+.|++|++||+ +++++..+ .+|...|.++++ +|++|++|+.|
T Consensus 207 ---------~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d 277 (393)
T 1erj_A 207 ---------DGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLD 277 (393)
T ss_dssp ---------SCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETT
T ss_pred ---------CCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCC
Confidence 1234566777 665 889999999999999 68877776 579999999875 78999999999
Q ss_pred cEEEEEeCC-------------CcccccccccccCEEEEEe--CCCEEEEEcCCCCeeeccccCCCC
Q 003171 479 GIVQVLDLE-------------GNLLGGWVAHSSPVIKMAV--GAGYIFTLANHGGIRGWNVTSPGP 530 (842)
Q Consensus 479 gtIrlWD~~-------------g~~i~~l~gH~~~V~sla~--dg~~l~S~S~DgtIrvWd~~~~~~ 530 (842)
++|+|||+. +.+..++.+|.+.|.++++ ++.+++|+|.|++|++||+.+..+
T Consensus 278 ~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~ 344 (393)
T 1erj_A 278 RSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNP 344 (393)
T ss_dssp SEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCE
T ss_pred CEEEEEECCCCCCcccccCCCCCcceEEEecccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCeE
Confidence 999999975 2345678899999999985 788999999999999999876544
|
| >3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.96 E-value=2.7e-28 Score=268.81 Aligned_cols=239 Identities=14% Similarity=0.135 Sum_probs=186.3
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCccee-EEecccCCcEEEEEEecCCC-EEEeeCCCcEEEEeC
Q 003171 192 SSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEV-LSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPW 269 (842)
Q Consensus 192 ~~V~~la~dpdg~~LaSGs~DGtIrlWdl~~g~~~~~~~~~~~-~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~ 269 (842)
+.|.+++|+|+|++|+||+.|++||+|++.++. .... ....+|.+.|++|+|+|+|+ |+|||.|++|+||++
T Consensus 17 ~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~------~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~~v~iw~~ 90 (345)
T 3fm0_A 17 SRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDS------WICKSVLSEGHQRTVRKVAWSPCGNYLASASFDATTCIWKK 90 (345)
T ss_dssp SCEEEEEECTTSSCEEEEETTSCEEEEEEETTE------EEEEEEECSSCSSCEEEEEECTTSSEEEEEETTSCEEEEEE
T ss_pred CcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCc------ceeeeeeccccCCcEEEEEECCCCCEEEEEECCCcEEEEEc
Confidence 389999999999999999999999999998751 0111 22379999999999999998 789999999999998
Q ss_pred CCccceeecCCCceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcCCCCEEEEeC-CCcEEEEEccCCcEEEEe
Q 003171 270 EAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVF 348 (842)
Q Consensus 270 ~t~~~~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s-~~tI~lWD~~tg~~l~~l 348 (842)
.+..... .. .+.+| ...|.++++++++..+++++ |++|++||+.++.....+
T Consensus 91 ~~~~~~~--------~~---------~~~~h----------~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~ 143 (345)
T 3fm0_A 91 NQDDFEC--------VT---------TLEGH----------ENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECV 143 (345)
T ss_dssp CCC-EEE--------EE---------EECCC----------SSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEE
T ss_pred cCCCeEE--------EE---------EccCC----------CCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEE
Confidence 6532110 00 11222 45688899999999998887 689999998765321110
Q ss_pred ecCCceEeeeecccCCCcccccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEeecCccccCCCceEEEEEC
Q 003171 349 NIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTS 428 (842)
Q Consensus 349 ~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~al~~s 428 (842)
. .+..|...|.+++++
T Consensus 144 ~----------------------------------------------------------------~~~~h~~~v~~~~~~ 159 (345)
T 3fm0_A 144 S----------------------------------------------------------------VLNSHTQDVKHVVWH 159 (345)
T ss_dssp E----------------------------------------------------------------EECCCCSCEEEEEEC
T ss_pred E----------------------------------------------------------------EecCcCCCeEEEEEC
Confidence 0 022344567788999
Q ss_pred CCCc-EEEEeCCCeEEEEcC-CCC--eeeeeecCCccEEEEEe--cCCEEEEEecCcEEEEEeCC--C------------
Q 003171 429 IDGM-IWTGGANGLLLQWDP-NGN--RLQDFQYLPFAVQCLCT--FGSQIWVGYMNGIVQVLDLE--G------------ 488 (842)
Q Consensus 429 ~dg~-l~Sgs~DgtIrlWD~-~g~--~l~~l~~H~~~V~sls~--dG~~LasGs~DgtIrlWD~~--g------------ 488 (842)
|++. |++|+.|++|++||. +++ ++.++.+|...|+++++ +|++|++|+.|++|+|||.. +
T Consensus 160 p~~~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~ 239 (345)
T 3fm0_A 160 PSQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDP 239 (345)
T ss_dssp SSSSCEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEEECTTCTTCCCCC---C
T ss_pred CCCCEEEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEeCCCeEEEeccccCCCCccceeeccCC
Confidence 9987 899999999999999 553 56789999999999875 78999999999999999952 1
Q ss_pred --cccccccc-cccCEEEEEe--CCCEEEEEcCCCCeeeccccC
Q 003171 489 --NLLGGWVA-HSSPVIKMAV--GAGYIFTLANHGGIRGWNVTS 527 (842)
Q Consensus 489 --~~i~~l~g-H~~~V~sla~--dg~~l~S~S~DgtIrvWd~~~ 527 (842)
+++.++.+ |...|+++++ ++..+++++.|++|++|+...
T Consensus 240 ~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~ 283 (345)
T 3fm0_A 240 SWKCICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDP 283 (345)
T ss_dssp EEEEEEEECSSCSSCEEEEEECTTTCCEEEEETTSCEEEEEECT
T ss_pred ccceeEEecCCCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCC
Confidence 22344544 8999999985 678999999999999999764
|
| >3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=4.9e-27 Score=300.49 Aligned_cols=341 Identities=14% Similarity=0.129 Sum_probs=221.0
Q ss_pred ceeEEEEecCC--EEEE-ecCCCEEEEeCCCCccccccccccccCCCCCCCCCCeeeeeecCCCeEEEEEcCCCCEEEEE
Q 003171 133 CFLRTIVCTEE--QLWA-GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSG 209 (842)
Q Consensus 133 ~~~~~l~~~~~--~l~~-~~D~~vrvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~V~~la~dpdg~~LaSG 209 (842)
..+.+++.+.+ .+.+ +.|++|++||+.+...... + ..| ..+|.|++|+|+|++|++|
T Consensus 616 ~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~~~~~-----------------~--~~h-~~~v~~~~~s~~~~~l~s~ 675 (1249)
T 3sfz_A 616 DAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLD-----------------I--KAH-EDEVLCCAFSSDDSYIATC 675 (1249)
T ss_dssp SCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEE-----------------E--CCC-SSCEEEEEECTTSSEEEEE
T ss_pred ccEEEEEECCCCCEEEEEeCCCeEEEEECCCCCEEEE-----------------e--ccC-CCCEEEEEEecCCCEEEEE
Confidence 35666776533 4554 5689999999976543211 1 123 7899999999999999999
Q ss_pred eCCCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCCC---EEEeeCCCcEEEEeCCCccceeecCCCceeee
Q 003171 210 HRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD---LWSGSEGGGIKIWPWEAIEKALSLKPEERHTA 286 (842)
Q Consensus 210 s~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~---L~SgS~DgtIrvWd~~t~~~~l~~~~~~~~~~ 286 (842)
+.||+|++||+.++ +.+.++.+|.++|++++|+|++. +++|+.|++|++||+.++.....+..+
T Consensus 676 ~~d~~v~vwd~~~~--------~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h----- 742 (1249)
T 3sfz_A 676 SADKKVKIWDSATG--------KLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGH----- 742 (1249)
T ss_dssp ETTSEEEEEETTTC--------CEEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECCC-----
T ss_pred eCCCeEEEEECCCC--------ceEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheecCC-----
Confidence 99999999999997 67888999999999999999653 679999999999999876543333222
Q ss_pred EEEEeeceeecccceeccceeeeecCCEEEEEEcCCCCEEEEeC-CCcEEEEEccCCcEEEEee----------------
Q 003171 287 ALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVFN---------------- 349 (842)
Q Consensus 287 ~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s-~~tI~lWD~~tg~~l~~l~---------------- 349 (842)
...+.++++++++..+++++ +++|++||+.+++....+.
T Consensus 743 ------------------------~~~v~~~~~sp~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 798 (1249)
T 3sfz_A 743 ------------------------TNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVE 798 (1249)
T ss_dssp ------------------------SSCEEEEEECSSTTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCC
T ss_pred ------------------------CCCEEEEEEecCCCEEEEEECCCeEEEEeCCCCcccceecccccccccCCcccccc
Confidence 23344555555555555444 3455555555554444332
Q ss_pred ---------------------------------------cCCceEeeeecccCCCccc--ccceEEEEEecC--------
Q 003171 350 ---------------------------------------IDGQIENRVDMSLLPDFAM--EDEFKTKIVTSS-------- 380 (842)
Q Consensus 350 ---------------------------------------~~~~~~~~~~~s~~~~~~~--~~~~~~~~~s~~-------- 380 (842)
++......+.+++.....+ ..+..+++|...
T Consensus 799 ~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~ 878 (1249)
T 3sfz_A 799 VIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADC 878 (1249)
T ss_dssp CCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEEEECSSSSCCCEEEECSSTTEEEEECSSSCEEEEETTTTEEEEEE
T ss_pred ceEEEEEECCCCCEEEEEcCCcEEEEEecCCCceeEEcCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeeec
Confidence 1211112222222211110 001111222211
Q ss_pred -CCCccceeeeEeecCcceEEecCCcEEEEeecCc------------------------------------------c-c
Q 003171 381 -KKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGG------------------------------------------F-G 416 (842)
Q Consensus 381 -~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~------------------------------------------~-~ 416 (842)
.....+..+.|.+++...+++..++..++|.... . .
T Consensus 879 ~~h~~~v~~v~~spdg~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 958 (1249)
T 3sfz_A 879 RGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDY 958 (1249)
T ss_dssp CCCSSCEEEEEECTTSSEEEEEETTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEE
T ss_pred CCCccceEEEEECCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeEEEcCCCcEEEEecCCcceEEEecCcceEEE
Confidence 1122234566767666677777776665553000 0 0
Q ss_pred cCCCceEEEEECCCCc-EEEEeCCCeEEEEcC-CCCeeeeeecCCccEEEEEe--cCCEEEEEecCcEEEEEeCCCcccc
Q 003171 417 DDNRRTEALTTSIDGM-IWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQCLCT--FGSQIWVGYMNGIVQVLDLEGNLLG 492 (842)
Q Consensus 417 ~~~~~v~al~~s~dg~-l~Sgs~DgtIrlWD~-~g~~l~~l~~H~~~V~sls~--dG~~LasGs~DgtIrlWD~~g~~i~ 492 (842)
.....+.+++++|+|. +++|+.||.|++||+ +++.+..+.+|...|+++++ +|++|++|+.||+|++||+......
T Consensus 959 ~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~i~vwd~~~~~~~ 1038 (1249)
T 3sfz_A 959 LPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYV 1038 (1249)
T ss_dssp ECCSCEEEEEECTTSSEEEEEETTSCCEEEETTTTSCEEECCCCSSCCCCEEECSSSSCEEEECSSSBEEEEETTTTEEE
T ss_pred cccCcEEEEEEcCCCCEEEEEcCCCCEEEEEcCCCceeeecccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCceE
Confidence 0123466777788776 677778888888888 67888888888888887754 6788888888888888888743333
Q ss_pred cccccccCEEEEEe-CCCEEEEEcCCCCeeeccccCCCC
Q 003171 493 GWVAHSSPVIKMAV-GAGYIFTLANHGGIRGWNVTSPGP 530 (842)
Q Consensus 493 ~l~gH~~~V~sla~-dg~~l~S~S~DgtIrvWd~~~~~~ 530 (842)
.+.+|...|.++++ .+..+++++.|++|++||+.+..+
T Consensus 1039 ~~~~~~~~v~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~ 1077 (1249)
T 3sfz_A 1039 FLQAHQETVKDFRLLQDSRLLSWSFDGTVKVWNVITGRI 1077 (1249)
T ss_dssp CCBCCSSCEEEEEECSSSEEEEEESSSEEEEEETTTTCC
T ss_pred EEecCCCcEEEEEEcCCCcEEEEECCCcEEEEECCCCce
Confidence 55688888888875 345677888888888888766554
|
| >3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A | Back alignment and structure |
|---|
Probab=99.96 E-value=1.3e-28 Score=268.90 Aligned_cols=304 Identities=12% Similarity=0.136 Sum_probs=216.3
Q ss_pred eeEEEEec-----CC-EEEE-ecCCCEEEEeCCCCccccccccccccCCCCCCCCCCeeeeeecCCCeEEEEEcCC----
Q 003171 134 FLRTIVCT-----EE-QLWA-GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEA---- 202 (842)
Q Consensus 134 ~~~~l~~~-----~~-~l~~-~~D~~vrvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~V~~la~dpd---- 202 (842)
.+.+++.. +. .+++ +.++.|++||+.+...... ...+....+ ...|.|++|+|+
T Consensus 20 ~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~--------------~~~~~~~~~-~~~v~~~~~~~~~~~~ 84 (366)
T 3k26_A 20 PLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRL--------------LQSYVDADA-DENFYTCAWTYDSNTS 84 (366)
T ss_dssp CEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEE--------------EEEEECSCT-TCCEEEEEEEECTTTC
T ss_pred ceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEe--------------eeeccccCC-CCcEEEEEeccCCCCC
Confidence 56667665 23 4554 5688999999975433211 000111112 568999999998
Q ss_pred CCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEec-CCC-EEEeeCCCcEEEEeCCCccceeecCC
Q 003171 203 SGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISS-YGD-LWSGSEGGGIKIWPWEAIEKALSLKP 280 (842)
Q Consensus 203 g~~LaSGs~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~-dG~-L~SgS~DgtIrvWd~~t~~~~l~~~~ 280 (842)
+++|++|+.||+|++||+.++ +.+..+.+|.++|++++|+| ++. |++|+.||+|++||+.+++....+..
T Consensus 85 ~~~l~~~~~dg~i~v~d~~~~--------~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 156 (366)
T 3k26_A 85 HPLLAVAGSRGIIRIINPITM--------QCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGG 156 (366)
T ss_dssp CEEEEEEETTCEEEEECTTTC--------CEEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEECS
T ss_pred CCEEEEecCCCEEEEEEchhc--------eEeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEecc
Confidence 679999999999999999987 67788999999999999999 777 78999999999999976543222210
Q ss_pred CceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcCCCCEEEEeC-CCcEEEEEccCCcEEEEeecCCceEeeee
Q 003171 281 EERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVFNIDGQIENRVD 359 (842)
Q Consensus 281 ~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s-~~tI~lWD~~tg~~l~~l~~~~~~~~~~~ 359 (842)
+.+| ...+.++++++++..+++++ +++|++||+.+++.+..+... ..
T Consensus 157 ----------------~~~~----------~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~------~~ 204 (366)
T 3k26_A 157 ----------------VEGH----------RDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKES------YD 204 (366)
T ss_dssp ----------------TTSC----------SSCEEEEEECTTSSEEEEEETTSCEEEEESCSHHHHHHHHHH------HT
T ss_pred ----------------cccc----------cCceeEEEECCCCCEEEEecCCCCEEEEECCCCcccccccee------EE
Confidence 0111 45688889988888888876 679999999988764433220 01
Q ss_pred cccCCCcccccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEeecCccccCCCceEEEEECCCCcEEEEeCC
Q 003171 360 MSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGMIWTGGAN 439 (842)
Q Consensus 360 ~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~al~~s~dg~l~Sgs~D 439 (842)
+++........ +.. ..... ......|...|.+++++ +..+++++.|
T Consensus 205 ~~~~~~~~~~~-----------------~~~----------~~~~~------~~~~~~~~~~v~~~~~~-~~~l~~~~~d 250 (366)
T 3k26_A 205 YNPNKTNRPFI-----------------SQK----------IHFPD------FSTRDIHRNYVDCVRWL-GDLILSKSCE 250 (366)
T ss_dssp CCGGGCSSCCC-----------------CEE----------ECCCS------EEECSSCSSCCCEEEEE-TTEEEEECSS
T ss_pred ecCCCCccccc-----------------cee----------eccCc------cccccCCcceEEEEEEc-CCEEEEEecC
Confidence 11110000000 000 00000 00123466778888888 5568999999
Q ss_pred CeEEEEcC-CCCe--------------eeeeecCCccEEEE--Eec--CCEEEEEecCcEEEEEeCC-Ccc----ccccc
Q 003171 440 GLLLQWDP-NGNR--------------LQDFQYLPFAVQCL--CTF--GSQIWVGYMNGIVQVLDLE-GNL----LGGWV 495 (842)
Q Consensus 440 gtIrlWD~-~g~~--------------l~~l~~H~~~V~sl--s~d--G~~LasGs~DgtIrlWD~~-g~~----i~~l~ 495 (842)
+.|++||+ ++++ +..+.+|...|+++ +++ |++|++|+.||.|++||+. +++ +..+.
T Consensus 251 ~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~ 330 (366)
T 3k26_A 251 NAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVEDPHKAKCTTLT 330 (366)
T ss_dssp SEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSSEEEEECTTSCEEEEECCSSSGGGCEEEEEC
T ss_pred CEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCCcEEEEEecCCcEEEEECCCCCCccccceEEc
Confidence 99999998 5543 77888899999876 567 9999999999999999997 543 34788
Q ss_pred cc--ccCEEEEEe--CCCEEEEEcCCCCeeecccc
Q 003171 496 AH--SSPVIKMAV--GAGYIFTLANHGGIRGWNVT 526 (842)
Q Consensus 496 gH--~~~V~sla~--dg~~l~S~S~DgtIrvWd~~ 526 (842)
+| ...|+++++ ++++|++++.||.|++||+.
T Consensus 331 ~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~ 365 (366)
T 3k26_A 331 HHKCGAAIRQTSFSRDSSILIAVCDDASIWRWDRL 365 (366)
T ss_dssp CTTCCSCEEEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred ccccCCceEEEEeCCCCCeEEEEeCCCEEEEEEec
Confidence 88 799999985 78899999999999999974
|
| >2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A | Back alignment and structure |
|---|
Probab=99.96 E-value=8.7e-28 Score=259.78 Aligned_cols=239 Identities=10% Similarity=0.093 Sum_probs=186.9
Q ss_pred ceeEEecccCCcEEEEEEecCCC-EEEeeCCCcEEEEeCCCccceeecCCCceeeeEEEEeeceeecccceeccceeeee
Q 003171 232 GEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSIL 310 (842)
Q Consensus 232 ~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~~t~~~~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~ 310 (842)
+...++++|.+.|++|+|+|+|. |+||+.||+|+|||+.++.....+. .+
T Consensus 4 ~~~~~~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~~~~-------------------~~---------- 54 (304)
T 2ynn_A 4 DIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQ-------------------VT---------- 54 (304)
T ss_dssp CCEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEE-------------------CC----------
T ss_pred eeEEeecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCceeEEee-------------------cc----------
Confidence 45678999999999999999998 7899999999999997653222111 11
Q ss_pred cCCEEEEEEcCCCCEEEEeC-CCcEEEEEccCCcEEEEeecCCceEeeeecccCCCcccccceEEEEEecCCCCccceee
Q 003171 311 TSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSF 389 (842)
Q Consensus 311 s~~v~~las~~~~~~v~s~s-~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~ 389 (842)
...+.++.+.+++..+++++ |++|++||+.+++++..+.+|...+..+.
T Consensus 55 ~~~v~~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~------------------------------ 104 (304)
T 2ynn_A 55 ETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIA------------------------------ 104 (304)
T ss_dssp SSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEE------------------------------
T ss_pred CCcEEEEEEeCCCCEEEEECCCCEEEEEECCCCcEEEEEeCCCCcEEEEE------------------------------
Confidence 34577788888888888877 57999999999999999887765443333
Q ss_pred eEeecCcceEEecCCcEEEEee--c-----CccccCCCceEEEEECC-CCc-EEEEeCCCeEEEEcC-CCCeeeeee-cC
Q 003171 390 GFFQRSRNAIMGAADAVRRVAA--K-----GGFGDDNRRTEALTTSI-DGM-IWTGGANGLLLQWDP-NGNRLQDFQ-YL 458 (842)
Q Consensus 390 ~~~~~~~~~~~g~~~~v~~v~~--~-----g~~~~~~~~v~al~~s~-dg~-l~Sgs~DgtIrlWD~-~g~~l~~l~-~H 458 (842)
|.+++...++|..++..++|. . ..+.+|...|.+++|+| ++. +++|+.|++|++||+ ++.+...+. +|
T Consensus 105 -~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~~~~~~~~~~ 183 (304)
T 2ynn_A 105 -VHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQ 183 (304)
T ss_dssp -ECSSSSEEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTTCTTEEEEEETTSEEEEEETTCSSCSEEEECCC
T ss_pred -EcCCCCEEEEECCCCeEEEEECCCCcchhhhhcccCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCccceeccCC
Confidence 333344455666666555554 1 13556888999999998 555 899999999999999 566655554 56
Q ss_pred CccEEEEEe----cCCEEEEEecCcEEEEEeCC-CcccccccccccCEEEEEe--CCCEEEEEcCCCCeeeccccCCCC
Q 003171 459 PFAVQCLCT----FGSQIWVGYMNGIVQVLDLE-GNLLGGWVAHSSPVIKMAV--GAGYIFTLANHGGIRGWNVTSPGP 530 (842)
Q Consensus 459 ~~~V~sls~----dG~~LasGs~DgtIrlWD~~-g~~i~~l~gH~~~V~sla~--dg~~l~S~S~DgtIrvWd~~~~~~ 530 (842)
...|.++.. ++++|++|+.|++|+|||++ ++++.++.+|...|.++++ ++..++|+|.|++||+||+.++..
T Consensus 184 ~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~~~~~ 262 (304)
T 2ynn_A 184 ERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKV 262 (304)
T ss_dssp TTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCE
T ss_pred cCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCccceeeCCCCCCEEEEEECCCCCEEEEEcCCCeEEEEECCCCce
Confidence 678887754 57799999999999999997 7889999999999999884 677899999999999999876543
|
| >3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.96 E-value=2.2e-27 Score=259.21 Aligned_cols=280 Identities=12% Similarity=0.095 Sum_probs=216.9
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCCC-EEEeeCCCcEEEEeC
Q 003171 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPW 269 (842)
Q Consensus 191 ~~~V~~la~dpdg~~LaSGs~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~ 269 (842)
.++|.|++|+|++++|++|+.||.|++||+.++ +....+.+|.+.|++++|+|+++ |++++.|++|++||+
T Consensus 32 ~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~--------~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~ 103 (369)
T 3zwl_B 32 ERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNG--------ERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWDV 103 (369)
T ss_dssp SSCEEEEEECTTSCEEEEEESSSCEEEEETTTC--------CEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEET
T ss_pred eceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCc--------hhhhhhhhcCCcEEEEEEcCCCCEEEEEeCCCeEEEEEC
Confidence 889999999999999999999999999999987 67888999999999999999997 789999999999999
Q ss_pred CCccceeecCCCceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcCCCCEEEEeCC------CcEEEEEccCCc
Q 003171 270 EAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGF------LSFALWDARTRE 343 (842)
Q Consensus 270 ~t~~~~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s~------~tI~lWD~~tg~ 343 (842)
.+++....+. ....+..+++++++..++++.. +.|++||+.++.
T Consensus 104 ~~~~~~~~~~------------------------------~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~ 153 (369)
T 3zwl_B 104 SNGQCVATWK------------------------------SPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDS 153 (369)
T ss_dssp TTCCEEEEEE------------------------------CSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECT
T ss_pred CCCcEEEEee------------------------------cCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCc
Confidence 7654322111 1345777888888888877663 689999997764
Q ss_pred EEEEeecCCceEeeeecccCCCcccccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEeec---C----ccc
Q 003171 344 LLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAK---G----GFG 416 (842)
Q Consensus 344 ~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~---g----~~~ 416 (842)
....+..... .. . ..............+.+.+++...+++..++..+++.. + .+.
T Consensus 154 ~~~~~~~~~~-------~~---------~--~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~ 215 (369)
T 3zwl_B 154 ATHELTKVSE-------EP---------I--HKIITHEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSID 215 (369)
T ss_dssp TTCCEEEECS-------SC---------S--EEEECCTTCCCEEEEEECGGGCEEEEEETTSEEEEEETTTTTEEEEEEE
T ss_pred cceeeccccc-------ce---------e--eeccCCcCccceeEEEEcCCCCEEEEEcCCCEEEEEECCCCcEeEEEEe
Confidence 3221111000 00 0 00011111113335566676777777888777666652 1 234
Q ss_pred cCCCceEEEEECCCCc-EEEEeCCCeEEEEcC-CCCeeeeeecCCccEEEEE--ecCCEEEEEecCc-------------
Q 003171 417 DDNRRTEALTTSIDGM-IWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQCLC--TFGSQIWVGYMNG------------- 479 (842)
Q Consensus 417 ~~~~~v~al~~s~dg~-l~Sgs~DgtIrlWD~-~g~~l~~l~~H~~~V~sls--~dG~~LasGs~Dg------------- 479 (842)
.+...|.+++++|++. |++++.|+.|++||+ +++++..+. +...+.+++ ++|+++++|+.++
T Consensus 216 ~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 294 (369)
T 3zwl_B 216 LHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQVLKKYE-TDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGK 294 (369)
T ss_dssp CCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE-CSSCEEEEEECSSSSEEEEEECCC-------------
T ss_pred cCCCceeEEEECCCCCEEEEecCCceEEEEECCCCceeeeec-CCCCceeEEecCCCceEEEeecCCCceEEEEecCCCc
Confidence 5778899999999997 789999999999999 688888887 677888775 4789999999888
Q ss_pred -EEEEEeCC-CcccccccccccCEEEEEe--CCCEEEEEcCCCCeeeccccC
Q 003171 480 -IVQVLDLE-GNLLGGWVAHSSPVIKMAV--GAGYIFTLANHGGIRGWNVTS 527 (842)
Q Consensus 480 -tIrlWD~~-g~~i~~l~gH~~~V~sla~--dg~~l~S~S~DgtIrvWd~~~ 527 (842)
.|++||.. ++++..+.+|.+.|.++++ +++++++++.|++|++|++..
T Consensus 295 ~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~ 346 (369)
T 3zwl_B 295 FEARFYHKIFEEEIGRVQGHFGPLNTVAISPQGTSYASGGEDGFIRLHHFEK 346 (369)
T ss_dssp CEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEEECH
T ss_pred ceeEEEecCCCcchhheecccCcEEEEEECCCCCEEEEEcCCCeEEEEECcc
Confidence 89999987 7889999999999999985 788999999999999999864
|
| >2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R | Back alignment and structure |
|---|
Probab=99.96 E-value=4.1e-27 Score=258.77 Aligned_cols=243 Identities=17% Similarity=0.166 Sum_probs=180.8
Q ss_pred CCCeEEEEE-----cC-CCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCCC-EEEeeCCCc
Q 003171 191 VSSVMCMVG-----DE-ASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGG 263 (842)
Q Consensus 191 ~~~V~~la~-----dp-dg~~LaSGs~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~Dgt 263 (842)
..+|.|++| ++ ++++|+||+.|++||+||+.++... .........+.+|..+|++++|+|++. |+|||.|++
T Consensus 21 ~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~-~~~~~~~~~l~~h~~~V~~~~~~~~~~~l~s~s~D~~ 99 (343)
T 2xzm_R 21 SDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQN-GYFGIPHKALTGHNHFVSDLALSQENCFAISSSWDKT 99 (343)
T ss_dssp SSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCS-SBSEEEEEEECCCSSCEEEEEECSSTTEEEEEETTSE
T ss_pred hhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcc-cccccccchhccCCCceEEEEECCCCCEEEEEcCCCc
Confidence 789999999 76 8999999999999999998764100 000134567899999999999999998 689999999
Q ss_pred EEEEeCCCccceeecCCCceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcCCCCEEEEeC-CCcEEEEEccCC
Q 003171 264 IKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTR 342 (842)
Q Consensus 264 IrvWd~~t~~~~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s-~~tI~lWD~~tg 342 (842)
||+||+.+++....+ .+| ...+.++++++++..+++++ +++|++||+...
T Consensus 100 v~lwd~~~~~~~~~~-------------------~~h----------~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~ 150 (343)
T 2xzm_R 100 LRLWDLRTGTTYKRF-------------------VGH----------QSEVYSVAFSPDNRQILSAGAEREIKLWNILGE 150 (343)
T ss_dssp EEEEETTSSCEEEEE-------------------ECC----------CSCEEEEEECSSTTEEEEEETTSCEEEEESSSC
T ss_pred EEEEECCCCcEEEEE-------------------cCC----------CCcEEEEEECCCCCEEEEEcCCCEEEEEeccCC
Confidence 999999775432211 112 45688899999888888876 689999998733
Q ss_pred cEEEEeecCCceEeeeecccCCCcccccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEeecCccccCCCce
Q 003171 343 ELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRT 422 (842)
Q Consensus 343 ~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v 422 (842)
....+.. ...|...|
T Consensus 151 -~~~~~~~----------------------------------------------------------------~~~~~~~v 165 (343)
T 2xzm_R 151 -CKFSSAE----------------------------------------------------------------KENHSDWV 165 (343)
T ss_dssp -EEEECCT----------------------------------------------------------------TTSCSSCE
T ss_pred -ceeeeec----------------------------------------------------------------ccCCCcee
Confidence 2221110 00122223
Q ss_pred EEEEECCCC-----------cEEEEeCCCeEEEEcCCCCeeeeeecCCccEEEEEe--cCCEEEEEecCcEEEEEeCC-C
Q 003171 423 EALTTSIDG-----------MIWTGGANGLLLQWDPNGNRLQDFQYLPFAVQCLCT--FGSQIWVGYMNGIVQVLDLE-G 488 (842)
Q Consensus 423 ~al~~s~dg-----------~l~Sgs~DgtIrlWD~~g~~l~~l~~H~~~V~sls~--dG~~LasGs~DgtIrlWD~~-g 488 (842)
.+++++|++ .+++|+.|++|++||.+++++.++.+|...|+++++ +|++|++|+.|++|+|||+. .
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~h~~~v~~~~~s~~g~~l~sgs~dg~v~iwd~~~~ 245 (343)
T 2xzm_R 166 SCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTNFQIRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWDILNL 245 (343)
T ss_dssp EEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEETTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTCEEEEEESSCC
T ss_pred eeeeeccccccccccCCCCCEEEEEcCCCEEEEEcCCCceeEEEcCccccceEEEECCCCCEEEEEcCCCeEEEEECCCC
Confidence 344444443 489999999999999888888899999999999865 78999999999999999984 3
Q ss_pred c-ccccccccccCEEEEEe--CCCEEEEEcCCCCeeeccccCCCC
Q 003171 489 N-LLGGWVAHSSPVIKMAV--GAGYIFTLANHGGIRGWNVTSPGP 530 (842)
Q Consensus 489 ~-~i~~l~gH~~~V~sla~--dg~~l~S~S~DgtIrvWd~~~~~~ 530 (842)
. ....+ .|...|.++++ ++.++ +++.|++|++|++.+...
T Consensus 246 ~~~~~~~-~~~~~v~~v~~sp~~~~l-a~~~d~~v~iw~~~~~~~ 288 (343)
T 2xzm_R 246 TYPQREF-DAGSTINQIAFNPKLQWV-AVGTDQGVKIFNLMTQSK 288 (343)
T ss_dssp SSCSEEE-ECSSCEEEEEECSSSCEE-EEEESSCEEEEESSSCCS
T ss_pred cccceee-cCCCcEEEEEECCCCCEE-EEECCCCEEEEEeCCCCC
Confidence 3 33333 45667999985 55554 567799999999876543
|
| >3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.96 E-value=7.3e-28 Score=262.47 Aligned_cols=277 Identities=13% Similarity=0.118 Sum_probs=203.8
Q ss_pred ceeEEEEecC--CEEEEec-----CCCEEEEeCCCCccccccccccccCCCCCCCCCCeeeeeecCCCeEEEEEcCC---
Q 003171 133 CFLRTIVCTE--EQLWAGG-----ENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEA--- 202 (842)
Q Consensus 133 ~~~~~l~~~~--~~l~~~~-----D~~vrvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~V~~la~dpd--- 202 (842)
..+.+++... ..+.++. |+.|++||+.+..... .....+ ..+|.|++|+|+
T Consensus 19 ~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~------------------~~~~~~-~~~v~~~~~~~~~~~ 79 (357)
T 3i2n_A 19 YTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKL------------------LREIEK-AKPIKCGTFGATSLQ 79 (357)
T ss_dssp SCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEE------------------EEEEEE-SSCEEEEECTTCCTT
T ss_pred CceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccc------------------eeeecc-cCcEEEEEEcCCCCC
Confidence 3566777654 3565533 8999999997643211 112234 789999999998
Q ss_pred CCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEE------EecCCC-EEEeeCCCcEEEEeCCCccc-
Q 003171 203 SGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLC------ISSYGD-LWSGSEGGGIKIWPWEAIEK- 274 (842)
Q Consensus 203 g~~LaSGs~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~sla------fs~dG~-L~SgS~DgtIrvWd~~t~~~- 274 (842)
+++|++|+.||+|++||+.++. .....+.+|.+.|+++. |+|+++ |++|+.|++|++||+.+...
T Consensus 80 ~~~l~~~~~dg~i~iwd~~~~~-------~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~ 152 (357)
T 3i2n_A 80 QRYLATGDFGGNLHIWNLEAPE-------MPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDP 152 (357)
T ss_dssp TCCEEEEETTSCEEEECTTSCS-------SCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSC
T ss_pred CceEEEecCCCeEEEEeCCCCC-------ccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCc
Confidence 6999999999999999999862 26778899999999995 467887 78999999999999977542
Q ss_pred eeecCCCceeeeEEEEeeceeecccceeccceeeeecCCEEEEE----EcCCCCEEEEeC-CCcEEEEEccCCcEEEEee
Q 003171 275 ALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLL----SDHSRAKVWSAG-FLSFALWDARTRELLKVFN 349 (842)
Q Consensus 275 ~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~la----s~~~~~~v~s~s-~~tI~lWD~~tg~~l~~l~ 349 (842)
...+..... + ....+.+++ .++++..+++++ ++.|++||+++++++...
T Consensus 153 ~~~~~~~~~----------------~---------~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~- 206 (357)
T 3i2n_A 153 VANMEPVQG----------------E---------NKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRWET- 206 (357)
T ss_dssp SEEECCCTT----------------S---------CCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEEEEEE-
T ss_pred ceeccccCC----------------C---------CCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCceeeec-
Confidence 111111100 0 012344555 445677777776 579999999987753221
Q ss_pred cCCceEeeeecccCCCcccccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEeecCccccCCCceEEEEECC
Q 003171 350 IDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSI 429 (842)
Q Consensus 350 ~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~al~~s~ 429 (842)
.+...+.+++++|
T Consensus 207 -------------------------------------------------------------------~~~~~v~~~~~~~ 219 (357)
T 3i2n_A 207 -------------------------------------------------------------------NIKNGVCSLEFDR 219 (357)
T ss_dssp -------------------------------------------------------------------ECSSCEEEEEESC
T ss_pred -------------------------------------------------------------------CCCCceEEEEcCC
Confidence 1122355677887
Q ss_pred ---CCc-EEEEeCCCeEEEEcC-CCCeeeeee-----cCCccEEEEEe--cCC-EEEEEecCcEEEEEeCC-C-------
Q 003171 430 ---DGM-IWTGGANGLLLQWDP-NGNRLQDFQ-----YLPFAVQCLCT--FGS-QIWVGYMNGIVQVLDLE-G------- 488 (842)
Q Consensus 430 ---dg~-l~Sgs~DgtIrlWD~-~g~~l~~l~-----~H~~~V~sls~--dG~-~LasGs~DgtIrlWD~~-g------- 488 (842)
++. +++|+.||.|++||+ +++++..+. +|...|+++++ +|+ +|++|+.||.|++||+. +
T Consensus 220 ~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 299 (357)
T 3i2n_A 220 KDISMNKLVATSLEGKFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKD 299 (357)
T ss_dssp SSSSCCEEEEEESTTEEEEEEEEEEETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CC
T ss_pred CCCCCCEEEEECCCCeEEEEeCcCCCcccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCccccccc
Confidence 665 899999999999999 666665555 89999999865 666 89999999999999975 2
Q ss_pred ------------cccccccccccCEEEEEe--CCCEEE-EEcCCCCeeeccccCC
Q 003171 489 ------------NLLGGWVAHSSPVIKMAV--GAGYIF-TLANHGGIRGWNVTSP 528 (842)
Q Consensus 489 ------------~~i~~l~gH~~~V~sla~--dg~~l~-S~S~DgtIrvWd~~~~ 528 (842)
+++..+.+|.+.|+++++ ++++++ |++.|+.|++|++...
T Consensus 300 ~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~s~~~d~~i~iw~~~~~ 354 (357)
T 3i2n_A 300 SEGIEMGVAGSVSLLQNVTLSTQPISSLDWSPDKRGLCVCSSFDQTVRVLIVTKL 354 (357)
T ss_dssp TTSCCCCCCCEEEEEEEEECCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECC-
T ss_pred CCCCccccccccceeeccccCCCCeeEEEEcCCCCeEEEEecCCCcEEEEECCCc
Confidence 357788999999999985 677888 8999999999998764
|
| >2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.96 E-value=4.8e-27 Score=260.13 Aligned_cols=270 Identities=15% Similarity=0.181 Sum_probs=198.6
Q ss_pred eeEEEEec--CCEEEE-ecCCCEEEEeCCCCccccccccccccCCCCCCCCCCeeeeeecCCCeEEEEEcCCCCEEEEEe
Q 003171 134 FLRTIVCT--EEQLWA-GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGH 210 (842)
Q Consensus 134 ~~~~l~~~--~~~l~~-~~D~~vrvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~V~~la~dpdg~~LaSGs 210 (842)
.+.+++.. +..|.+ +.|++|+|||..+..... ....+ ...|.+++|+|+|..|++|+
T Consensus 66 ~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~-------------------~~~~~-~~~v~~~~~sp~g~~lasg~ 125 (354)
T 2pbi_B 66 KVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEH-------------------AVTMP-CTWVMACAYAPSGCAIACGG 125 (354)
T ss_dssp CEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEE-------------------EEECS-SSCCCEEEECTTSSEEEEES
T ss_pred eEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcce-------------------EEecC-CCCEEEEEECCCCCEEEEee
Confidence 46666665 335555 569999999986543221 11123 67899999999999999999
Q ss_pred CCCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCCC-EEEeeCCCcEEEEeCCCccceeecCCCceeeeEEE
Q 003171 211 RDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALI 289 (842)
Q Consensus 211 ~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~~t~~~~l~~~~~~~~~~~l~ 289 (842)
.|+++++|++.... ..........+.+|.+.|.+++|+|++. |+|||.|++|++||+++++....+.
T Consensus 126 ~d~~i~v~~~~~~~--~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~~~~---------- 193 (354)
T 2pbi_B 126 LDNKCSVYPLTFDK--NENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFH---------- 193 (354)
T ss_dssp TTSEEEEEECCCCT--TCCSGGGCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEE----------
T ss_pred CCCCEEEEEEeccc--cccccccceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeEEEEEc----------
Confidence 99999999987531 0111234567789999999999999997 8999999999999997754322221
Q ss_pred EeeceeecccceeccceeeeecCCEEEEEEcC--CCCEEEEeC-CCcEEEEEccCCcEEEEeecCCceEeeeecccCCCc
Q 003171 290 VERSYIDLRSHLSVNGFSSILTSDIKNLLSDH--SRAKVWSAG-FLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDF 366 (842)
Q Consensus 290 ~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~--~~~~v~s~s-~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~ 366 (842)
+| ...+.++.+.+ ++..+++++ |++|++||+++++++.++..|...++.+.+
T Consensus 194 ---------~h----------~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~~~~~~~h~~~v~~v~~------ 248 (354)
T 2pbi_B 194 ---------GH----------GADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRY------ 248 (354)
T ss_dssp ---------CC----------SSCEEEEEECCCSSCCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEE------
T ss_pred ---------CC----------CCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCeEEEEE------
Confidence 12 34566666654 356777776 689999999999999888776654443333
Q ss_pred ccccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEeec--C----ccc--cCCCceEEEEECCCCc-EEEEe
Q 003171 367 AMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAK--G----GFG--DDNRRTEALTTSIDGM-IWTGG 437 (842)
Q Consensus 367 ~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~--g----~~~--~~~~~v~al~~s~dg~-l~Sgs 437 (842)
.+++...+++..++..+++.. + .+. .+...+.+++|+|+|. |++|+
T Consensus 249 -------------------------~p~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~ 303 (354)
T 2pbi_B 249 -------------------------YPSGDAFASGSDDATCRLYDLRADREVAIYSKESIIFGASSVDFSLSGRLLFAGY 303 (354)
T ss_dssp -------------------------CTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEE
T ss_pred -------------------------eCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCcccceeEEEEeCCCCEEEEEE
Confidence 333334455555555555531 1 111 1234678899999998 78999
Q ss_pred CCCeEEEEcC-CCCeeeeeecCCccEEEEEe--cCCEEEEEecCcEEEEEe
Q 003171 438 ANGLLLQWDP-NGNRLQDFQYLPFAVQCLCT--FGSQIWVGYMNGIVQVLD 485 (842)
Q Consensus 438 ~DgtIrlWD~-~g~~l~~l~~H~~~V~sls~--dG~~LasGs~DgtIrlWD 485 (842)
.|++|++||+ +++++..+.+|..+|.++++ +|++|++|+.|++|+||+
T Consensus 304 ~d~~i~vwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~sgs~D~~v~vW~ 354 (354)
T 2pbi_B 304 NDYTINVWDVLKGSRVSILFGHENRVSTLRVSPDGTAFCSGSWDHTLRVWA 354 (354)
T ss_dssp TTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEC
T ss_pred CCCcEEEEECCCCceEEEEECCCCcEEEEEECCCCCEEEEEcCCCCEEecC
Confidence 9999999999 89999999999999999864 799999999999999996
|
| >2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.5e-27 Score=261.29 Aligned_cols=240 Identities=13% Similarity=0.133 Sum_probs=182.3
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEe-cc-cCCcEEEEEEecCCC-EEEeeCCCcEEEE
Q 003171 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSW-QA-HRGPVLSLCISSYGD-LWSGSEGGGIKIW 267 (842)
Q Consensus 191 ~~~V~~la~dpdg~~LaSGs~DGtIrlWdl~~g~~~~~~~~~~~~~l-~g-H~~~V~slafs~dG~-L~SgS~DgtIrvW 267 (842)
..+|.|++++|+ +|+||+.||+|++|++.++. +.....+ .+ |.++|++|+|+|+|+ |++||.|++||||
T Consensus 14 ~~~v~~~~~s~~--~las~~~D~~i~lw~~~~~~------~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~iw 85 (330)
T 2hes_X 14 KEKIWSFDFSQG--ILATGSTDRKIKLVSVKYDD------FTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDSTVSIW 85 (330)
T ss_dssp SSCEEEEEEETT--EEEEEESSSCEEEEECSSSC------CEEEEEECTTCCCSCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred CCceeeeccCCC--EEEEEcCCCEEEEEEecCCC------eEEEEEEecCCccCCEEEEEECCCCCEEEEEeCCCcEEEE
Confidence 789999999986 99999999999999998741 1334445 44 999999999999998 7899999999999
Q ss_pred eCCCccceeecCCCceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcCCCCEEEEeC-CCcEEEEEccCC-c--
Q 003171 268 PWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTR-E-- 343 (842)
Q Consensus 268 d~~t~~~~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s-~~tI~lWD~~tg-~-- 343 (842)
++....... . ...... .+.+| ...|.++++++++..|++++ |++|++||+.+. .
T Consensus 86 ~~~~~~~~~-~--~~~~~~---------~~~~h----------~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~ 143 (330)
T 2hes_X 86 AKEESADRT-F--EMDLLA---------IIEGH----------ENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEY 143 (330)
T ss_dssp EC--------C--CCEEEE---------EEC--------------CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCC
T ss_pred EcccCcCcc-c--cceeEE---------EEcCC----------CCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCe
Confidence 985421100 0 000001 12222 45688999999999999887 689999998432 1
Q ss_pred -EEEEeecCCceEeeeecccCCCcccccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEeecCccccCCCce
Q 003171 344 -LLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRT 422 (842)
Q Consensus 344 -~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v 422 (842)
++.+ +.+|...|
T Consensus 144 ~~~~~-------------------------------------------------------------------~~~h~~~v 156 (330)
T 2hes_X 144 ECISV-------------------------------------------------------------------LQEHSQDV 156 (330)
T ss_dssp EEEEE-------------------------------------------------------------------ECCCSSCE
T ss_pred EEEEE-------------------------------------------------------------------eccCCCce
Confidence 1111 22455667
Q ss_pred EEEEECCCCc-EEEEeCCCeEEEEcC-CC--CeeeeeecCCccEEEEEe--c--CCEEEEEecCcEEEEEeCCC------
Q 003171 423 EALTTSIDGM-IWTGGANGLLLQWDP-NG--NRLQDFQYLPFAVQCLCT--F--GSQIWVGYMNGIVQVLDLEG------ 488 (842)
Q Consensus 423 ~al~~s~dg~-l~Sgs~DgtIrlWD~-~g--~~l~~l~~H~~~V~sls~--d--G~~LasGs~DgtIrlWD~~g------ 488 (842)
.+++++|++. |++|+.|++|++||. ++ +++.++.+|...|.++++ + +.+|++|+.|++|+|||+.+
T Consensus 157 ~~v~~~p~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~ 236 (330)
T 2hes_X 157 KHVIWHPSEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQ 236 (330)
T ss_dssp EEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEECTTSC
T ss_pred EEEEECCCCCEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCCCcccc
Confidence 8889999987 899999999999998 55 688999999999999875 4 56899999999999999752
Q ss_pred ---cccccccc-cccCEEEEEe-CCCEEEEEcCCCCeeeccccC
Q 003171 489 ---NLLGGWVA-HSSPVIKMAV-GAGYIFTLANHGGIRGWNVTS 527 (842)
Q Consensus 489 ---~~i~~l~g-H~~~V~sla~-dg~~l~S~S~DgtIrvWd~~~ 527 (842)
.+...+.+ |...|+++++ ++..+++++.|++|++|+...
T Consensus 237 ~~~~~~~~~~~~h~~~v~~v~~s~~~~l~s~~~dg~v~iw~~~~ 280 (330)
T 2hes_X 237 QEWVCEAILPDVHKRQVYNVAWGFNGLIASVGADGVLAVYEEVD 280 (330)
T ss_dssp EEEEEEEECCSCCSSCEEEEEECTTSCEEEEETTSCEEEEEEET
T ss_pred ceeEEeeecccccccceEEEEEcCCCEEEEEeCCCEEEEEEcCC
Confidence 34555655 9999999996 456899999999999999753
|
| >1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C | Back alignment and structure |
|---|
Probab=99.96 E-value=3.4e-27 Score=259.10 Aligned_cols=272 Identities=11% Similarity=0.108 Sum_probs=204.2
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCCC-EEEeeCCCcEEEEeC
Q 003171 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPW 269 (842)
Q Consensus 191 ~~~V~~la~dpdg~~LaSGs~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~ 269 (842)
..+|.|++|+|++++|++|+.||+|++||+.++. +.....+.+|.+.|++++|+|+|+ |++|+.|++|++||+
T Consensus 8 ~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~------~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~ 81 (372)
T 1k8k_C 8 VEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNK------WVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTL 81 (372)
T ss_dssp SSCCCEEEECTTSSEEEEECSSSEEEEEEEETTE------EEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEE
T ss_pred CCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCc------EEeeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEEC
Confidence 7799999999999999999999999999998851 126788899999999999999998 789999999999999
Q ss_pred CCccceeecCCCceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcCCCCEEEEeC-CCcEEEEEccCCcE---E
Q 003171 270 EAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTREL---L 345 (842)
Q Consensus 270 ~t~~~~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s-~~tI~lWD~~tg~~---l 345 (842)
.+++...... +..+ ...+.++++++++..+++++ ++.|++||+.+++. .
T Consensus 82 ~~~~~~~~~~-----------------~~~~----------~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~ 134 (372)
T 1k8k_C 82 KGRTWKPTLV-----------------ILRI----------NRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVC 134 (372)
T ss_dssp ETTEEEEEEE-----------------CCCC----------SSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEE
T ss_pred CCCeeeeeEE-----------------eecC----------CCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceee
Confidence 6543111100 0011 34678888888888888876 57899999988762 2
Q ss_pred EEe-ecCCceEeeeecccCCCcccccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEee-------------
Q 003171 346 KVF-NIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAA------------- 411 (842)
Q Consensus 346 ~~l-~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~------------- 411 (842)
..+ ..|......+ .|.+++...+++..++..+++.
T Consensus 135 ~~~~~~~~~~i~~~-------------------------------~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~ 183 (372)
T 1k8k_C 135 KHIKKPIRSTVLSL-------------------------------DWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPT 183 (372)
T ss_dssp EEECTTCCSCEEEE-------------------------------EECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCB
T ss_pred eeeecccCCCeeEE-------------------------------EEcCCCCEEEEEcCCCCEEEEEccccccccccccc
Confidence 222 2222222233 3333333344444444333332
Q ss_pred -------cC----ccccCCCceEEEEECCCCc-EEEEeCCCeEEEEcC-CCCeeeeeecCCccEEEEE--ecCCEEEEEe
Q 003171 412 -------KG----GFGDDNRRTEALTTSIDGM-IWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQCLC--TFGSQIWVGY 476 (842)
Q Consensus 412 -------~g----~~~~~~~~v~al~~s~dg~-l~Sgs~DgtIrlWD~-~g~~l~~l~~H~~~V~sls--~dG~~LasGs 476 (842)
.+ .+..|...+.+++++|++. |++++.|++|++||+ +++++..+..|..+|.+++ ++|++|++|
T Consensus 184 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~- 262 (372)
T 1k8k_C 184 PWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASETLPLLAVTFITESSLVAAG- 262 (372)
T ss_dssp TTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEEECSSCCEEEEEEEETTEEEEEE-
T ss_pred ccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEeCCCEEEEEECCCCceeEEEccCCCCeEEEEEecCCCEEEEE-
Confidence 11 2335677899999999996 899999999999999 7999999999999999885 478888887
Q ss_pred cCcEEEEEeCCC--c---cc------------------------------------ccc-cccccCEEEEE---eCC---
Q 003171 477 MNGIVQVLDLEG--N---LL------------------------------------GGW-VAHSSPVIKMA---VGA--- 508 (842)
Q Consensus 477 ~DgtIrlWD~~g--~---~i------------------------------------~~l-~gH~~~V~sla---~dg--- 508 (842)
.|+.|++||+.. . ++ ..+ .+|.+.|++++ .+|
T Consensus 263 ~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~g~~~ 342 (372)
T 1k8k_C 263 HDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKC 342 (372)
T ss_dssp TTSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCCC---------CCCSSSSSSCEEEEEEEESTTTSC
T ss_pred eCCeEEEEEccCcCceEEEeeccCccccchhhhcchhhhhhhcccccccccCccccccccccccCCcceeEEecCCCcce
Confidence 899999999754 1 11 233 59999999997 356
Q ss_pred CEEEEEcCCCCeeeccccC
Q 003171 509 GYIFTLANHGGIRGWNVTS 527 (842)
Q Consensus 509 ~~l~S~S~DgtIrvWd~~~ 527 (842)
.+++|+|.||+|++|++.+
T Consensus 343 ~~l~s~~~Dg~i~~W~~~~ 361 (372)
T 1k8k_C 343 SQFCTTGMDGGMSIWDVRS 361 (372)
T ss_dssp SEEEEEETTSEEEEEEHHH
T ss_pred eeEEEecCCCceEEEEecC
Confidence 8999999999999999754
|
| >2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.96 E-value=2.4e-27 Score=294.41 Aligned_cols=165 Identities=9% Similarity=0.042 Sum_probs=117.6
Q ss_pred eeEEEEecCC--EEEE-ecCCCEEEEeCCCCccccccccccccCCCCCCCCCCeeeeeecCCCeEEEEEcCCCCEEEEEe
Q 003171 134 FLRTIVCTEE--QLWA-GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGH 210 (842)
Q Consensus 134 ~~~~l~~~~~--~l~~-~~D~~vrvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~V~~la~dpdg~~LaSGs 210 (842)
.+.+++.+.+ .|.+ +.|++|+|||..+.... + ...+ ..+|.+|+|+| |++|+||+
T Consensus 19 ~V~~lafspdg~~lAsgs~Dg~I~lw~~~~~~~~-------------------~-~~~~-~~~V~~l~fsp-g~~L~S~s 76 (902)
T 2oaj_A 19 KPIAAAFDFTQNLLAIATVTGEVHIYGQQQVEVV-------------------I-KLED-RSAIKEMRFVK-GIYLVVIN 76 (902)
T ss_dssp CEEEEEEETTTTEEEEEETTSEEEEECSTTCEEE-------------------E-ECSS-CCCEEEEEEET-TTEEEEEE
T ss_pred CcEEEEECCCCCEEEEEeCCCEEEEEeCCCcEEE-------------------E-EcCC-CCCEEEEEEcC-CCEEEEEE
Confidence 4667777643 4444 46999999997653211 0 1112 66899999999 88999999
Q ss_pred CCCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCCC-EEEeeCCCcEEEEeCCCccceeecCCCceeeeEEE
Q 003171 211 RDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALI 289 (842)
Q Consensus 211 ~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~~t~~~~l~~~~~~~~~~~l~ 289 (842)
.|++|++||+.++ +.+.++. |.+.|++++|+|+|+ |++|+.||+|++||+.+.... .+.
T Consensus 77 ~D~~v~lWd~~~~--------~~~~~~~-~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~-~~~---------- 136 (902)
T 2oaj_A 77 AKDTVYVLSLYSQ--------KVLTTVF-VPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLS-SFK---------- 136 (902)
T ss_dssp TTCEEEEEETTTC--------SEEEEEE-CSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEE-EEE----------
T ss_pred CcCeEEEEECCCC--------cEEEEEc-CCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCccc-cce----------
Confidence 9999999999987 5566665 778999999999998 789999999999999764321 000
Q ss_pred Eeece---eecccceeccceeeeecCCEEEEEEcCCC-CEEEEeC-CCcEEEEEccCCcEEEEeecC
Q 003171 290 VERSY---IDLRSHLSVNGFSSILTSDIKNLLSDHSR-AKVWSAG-FLSFALWDARTRELLKVFNID 351 (842)
Q Consensus 290 ~~~s~---~~l~~~~~~~~~~~~~s~~v~~las~~~~-~~v~s~s-~~tI~lWD~~tg~~l~~l~~~ 351 (842)
+.... ..+++| ...|.++++++.+ ..+++++ +++| +||++++++++++..+
T Consensus 137 i~~~~~~~~~~~~h----------~~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~ 192 (902)
T 2oaj_A 137 LDNLQKSSFFPAAR----------LSPIVSIQWNPRDIGTVLISYEYVTL-TYSLVENEIKQSFIYE 192 (902)
T ss_dssp ECCHHHHHTCSSSC----------CCCCCEEEEETTEEEEEEEECSSCEE-EEETTTTEEEEEECCC
T ss_pred eccccccccccccC----------CCCeEEEEEccCCCCEEEEEeCCCcE-EEECCCCceEEEEecc
Confidence 00000 011222 3467788888753 5666666 5688 9999999999888765
|
| >2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.96 E-value=2.4e-28 Score=285.42 Aligned_cols=305 Identities=10% Similarity=-0.024 Sum_probs=194.0
Q ss_pred ecCCCEEEEeCCCCccccccccccccCCCCCCCCCCeeeeee-cCCCeEEEEEcCC------CCEEEEEeCCCcEEEEEC
Q 003171 148 GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVK-GVSSVMCMVGDEA------SGVVWSGHRDGRIMCWKM 220 (842)
Q Consensus 148 ~~D~~vrvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~V~~la~dpd------g~~LaSGs~DGtIrlWdl 220 (842)
+.|++|+|||+.+..... .....+. +.+.|.+|+|+|+ +++||||+.||+||+||+
T Consensus 180 s~D~tI~iWd~~~~~~~~-----------------~~~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~ 242 (524)
T 2j04_B 180 KHSSCIQIFKMNTSTLHC-----------------VKVQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEI 242 (524)
T ss_dssp --CEEEEEEEEETTTCCE-----------------EEEEEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEEC
T ss_pred CCCceEEEEEccCCCCCc-----------------eEEEEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEc
Confidence 569999999986532110 0011111 1678999999996 579999999999999999
Q ss_pred CCCccCCC---CCcceeEEecccCCcEEEEEEecCCCEEEeeCCCcEEEEeCCCccceeecCCCceeeeEEEEeeceeec
Q 003171 221 NARLLDSD---DGFGEVLSWQAHRGPVLSLCISSYGDLWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDL 297 (842)
Q Consensus 221 ~~g~~~~~---~~~~~~~~l~gH~~~V~slafs~dG~L~SgS~DgtIrvWd~~t~~~~l~~~~~~~~~~~l~~~~s~~~l 297 (842)
.++.+... .......++.+|.++|++++|++++.|++||.||+|++||+.+...... .+
T Consensus 243 ~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~~~lasgs~DgtV~lWD~~~~~~~~~------------------~~ 304 (524)
T 2j04_B 243 IDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSPTTVVCGFKNGFVAEFDLTDPEVPSF------------------YD 304 (524)
T ss_dssp CCCSSSSSEEECCCSCSEEECCTTTCEEEEEESSSSEEEEEETTSEEEEEETTBCSSCSE------------------EE
T ss_pred CCCccccccceeecCceEEEEcCCCCEEEEEecCCCeEEEEeCCCEEEEEECCCCCCceE------------------Ee
Confidence 87521000 0011235788999999999999987799999999999999976421110 01
Q ss_pred ccceeccceeeeecCCEEEE--EEcCCC-CEEEEeC-CCcEEEEEccCCcEEEEeecCCceEeeeecccCCCcccccceE
Q 003171 298 RSHLSVNGFSSILTSDIKNL--LSDHSR-AKVWSAG-FLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFK 373 (842)
Q Consensus 298 ~~~~~~~~~~~~~s~~v~~l--as~~~~-~~v~s~s-~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~ 373 (842)
.+| ...|.++ ++.+++ ..+++++ |++|+|||+++++++.++.++...
T Consensus 305 ~~H----------~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~~~~~~~~~~~------------------- 355 (524)
T 2j04_B 305 QVH----------DSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATTKTTVSRFRG------------------- 355 (524)
T ss_dssp ECS----------SSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHHHCEEEEECSC-------------------
T ss_pred ecc----------cccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCccccccccccc-------------------
Confidence 112 4467777 345555 6778777 689999999998876665433210
Q ss_pred EEEEecCCCCccceeeeEeecCcceEEecCCcEEEEee--cC----ccccCCCceEEEEECCCCc-EEEEeCCCeEEEEc
Q 003171 374 TKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAA--KG----GFGDDNRRTEALTTSIDGM-IWTGGANGLLLQWD 446 (842)
Q Consensus 374 ~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~--~g----~~~~~~~~v~al~~s~dg~-l~Sgs~DgtIrlWD 446 (842)
..+.++.|.+++...+.+..++..+++. .+ .+.+|...|.+|+|+|+|. |+||+.||+|++||
T Consensus 356 ----------~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~~~l~gH~~~V~sva~Sp~g~~l~Sgs~Dgtv~lwd 425 (524)
T 2j04_B 356 ----------SNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAFAVHPLVSRETTITAIGVSRLHPMVLAGSADGSLIITN 425 (524)
T ss_dssp ----------CSCCCEEEETTTTEEEEECSSSEEEEEETTCTTCCEEEEECSSCEEEEECCSSCCBCEEEETTTEEECCB
T ss_pred ----------CcccceEeCCCcCeEEEeCCCCcEEEEECcccccceeeecCCCceEEEEeCCCCCeEEEEECCCEEEEEe
Confidence 0011234555444445555565555554 11 2456888999999999997 89999999999999
Q ss_pred CCCCeeeeeecC-----CccEEEEE--ecCCEEEEEecCcEEEEEeCCCcccccccccccCEEEEEeCC-----CEEEEE
Q 003171 447 PNGNRLQDFQYL-----PFAVQCLC--TFGSQIWVGYMNGIVQVLDLEGNLLGGWVAHSSPVIKMAVGA-----GYIFTL 514 (842)
Q Consensus 447 ~~g~~l~~l~~H-----~~~V~sls--~dG~~LasGs~DgtIrlWD~~g~~i~~l~gH~~~V~sla~dg-----~~l~S~ 514 (842)
+.+++++.++.+ ...|.+++ ++|+.+. ...+..+..|+.+|.++.++.+|...|++|++++ ..+++|
T Consensus 426 ~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~~~-~~~~~~~~~~~~~g~~~~~l~gh~~~V~~Vafsp~~~~~~~lAsg 504 (524)
T 2j04_B 426 AARRLLHGIKNSSATQKSLRLWKWDYSIKDDKYR-IDSSYEVYPLTVNDVSKAKIDAHGINITCTKWNETSAGGKCYAFS 504 (524)
T ss_dssp SCSSTTTCC------CCCCEEEECBCCSSSCEEE-ECCCCCCCC-------------CCCSCCCEEECCSTTTTTEEEEE
T ss_pred chHhhccccccCccceeeeEEEEeccCCCCCeEE-ccCCceecccccCCcceeeecCCCceEEEEECCCCCCccHHHHhh
Confidence 966555544321 12466664 4666442 2222223333345888999999999999999643 389999
Q ss_pred cCCCCeeeccccC
Q 003171 515 ANHGGIRGWNVTS 527 (842)
Q Consensus 515 S~DgtIrvWd~~~ 527 (842)
+.||+||||++..
T Consensus 505 ~~~g~vrlw~l~~ 517 (524)
T 2j04_B 505 NSAGLLTLEYLSL 517 (524)
T ss_dssp CTTSEEEEEECSC
T ss_pred ccCceEEEEEccc
Confidence 9999999999764
|
| >3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.96 E-value=9.2e-27 Score=248.90 Aligned_cols=266 Identities=17% Similarity=0.152 Sum_probs=205.0
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCCC-EEEeeCCCcEEEEeC
Q 003171 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPW 269 (842)
Q Consensus 191 ~~~V~~la~dpdg~~LaSGs~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~ 269 (842)
.++|.|+++ |++++|++|+.||+|++||+.++ .....+.+|.+.|++++|+|+++ |++|+.|+.|++|++
T Consensus 18 ~~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~~--------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~ 88 (313)
T 3odt_A 18 DQDVRDVVA-VDDSKVASVSRDGTVRLWSKDDQ--------WLGTVVYTGQGFLNSVCYDSEKELLLFGGKDTMINGVPL 88 (313)
T ss_dssp SSCEEEEEE-EETTEEEEEETTSEEEEEEESSS--------EEEEEEEECSSCEEEEEEETTTTEEEEEETTSCEEEEET
T ss_pred CCCcEEEEe-cCCCEEEEEEcCCcEEEEECCCC--------EEEEEeecCCccEEEEEECCCCCEEEEecCCCeEEEEEe
Confidence 789999999 89999999999999999999886 66777899999999999999998 789999999999998
Q ss_pred CCccceeecCCCceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcCCCCEEEEeC-CCcEEEEEccCCcEEEEe
Q 003171 270 EAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVF 348 (842)
Q Consensus 270 ~t~~~~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s-~~tI~lWD~~tg~~l~~l 348 (842)
....... ... .+.+| ...+.++.. ++..+++++ +++|++|| +++.+..+
T Consensus 89 ~~~~~~~-------~~~---------~~~~~----------~~~i~~~~~--~~~~l~~~~~d~~i~~~d--~~~~~~~~ 138 (313)
T 3odt_A 89 FATSGED-------PLY---------TLIGH----------QGNVCSLSF--QDGVVISGSWDKTAKVWK--EGSLVYNL 138 (313)
T ss_dssp TCCTTSC-------C-C---------EECCC----------SSCEEEEEE--ETTEEEEEETTSEEEEEE--TTEEEEEE
T ss_pred eecCCCC-------ccc---------chhhc----------ccCEEEEEe--cCCEEEEEeCCCCEEEEc--CCcEEEec
Confidence 6532100 000 01111 345666666 345666655 68999999 66776666
Q ss_pred ecCCceEeeeecccCCCcccccceEEEEEecCCCCccceeeeEee-cCcceEEecCCcEEEEeecC----cccc-CCCce
Q 003171 349 NIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQ-RSRNAIMGAADAVRRVAAKG----GFGD-DNRRT 422 (842)
Q Consensus 349 ~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~-~~~~~~~g~~~~v~~v~~~g----~~~~-~~~~v 422 (842)
..+......+ .+.+ .+...+++..++..+++..+ .+.. +...+
T Consensus 139 ~~~~~~v~~~-------------------------------~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~i 187 (313)
T 3odt_A 139 QAHNASVWDA-------------------------------KVVSFSENKFLTASADKTIKLWQNDKVIKTFSGIHNDVV 187 (313)
T ss_dssp ECCSSCEEEE-------------------------------EEEETTTTEEEEEETTSCEEEEETTEEEEEECSSCSSCE
T ss_pred ccCCCceeEE-------------------------------EEccCCCCEEEEEECCCCEEEEecCceEEEEeccCcccE
Confidence 6554432222 2222 23334555555555554422 2333 67789
Q ss_pred EEEEECCCCcEEEEeCCCeEEEEcC-CCCeeeeeecCCccEEEEEe--cCCEEEEEecCcEEEEEeCC-Ccccccccccc
Q 003171 423 EALTTSIDGMIWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQCLCT--FGSQIWVGYMNGIVQVLDLE-GNLLGGWVAHS 498 (842)
Q Consensus 423 ~al~~s~dg~l~Sgs~DgtIrlWD~-~g~~l~~l~~H~~~V~sls~--dG~~LasGs~DgtIrlWD~~-g~~i~~l~gH~ 498 (842)
.+++++|++.+++|+.||.|++||+ +++++..+.+|...|+++++ +| +|++|+.||+|++||++ ++++..+..|.
T Consensus 188 ~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~~ 266 (313)
T 3odt_A 188 RHLAVVDDGHFISCSNDGLIKLVDMHTGDVLRTYEGHESFVYCIKLLPNG-DIVSCGEDRTVRIWSKENGSLKQVITLPA 266 (313)
T ss_dssp EEEEEEETTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTS-CEEEEETTSEEEEECTTTCCEEEEEECSS
T ss_pred EEEEEcCCCeEEEccCCCeEEEEECCchhhhhhhhcCCceEEEEEEecCC-CEEEEecCCEEEEEECCCCceeEEEeccC
Confidence 9999999999999999999999999 78999999999999999976 45 79999999999999987 78899999999
Q ss_pred cCEEEEEe--CCCEEEEEcCCCCeeeccccCC
Q 003171 499 SPVIKMAV--GAGYIFTLANHGGIRGWNVTSP 528 (842)
Q Consensus 499 ~~V~sla~--dg~~l~S~S~DgtIrvWd~~~~ 528 (842)
..|.++++ +++ +++++.|+.|++|++...
T Consensus 267 ~~i~~~~~~~~~~-~~~~~~dg~i~iw~~~~~ 297 (313)
T 3odt_A 267 ISIWSVDCMSNGD-IIVGSSDNLVRIFSQEKS 297 (313)
T ss_dssp SCEEEEEECTTSC-EEEEETTSCEEEEESCGG
T ss_pred ceEEEEEEccCCC-EEEEeCCCcEEEEeCCCC
Confidence 99999985 555 778999999999998653
|
| >1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.96 E-value=5.5e-27 Score=261.16 Aligned_cols=291 Identities=13% Similarity=0.167 Sum_probs=209.9
Q ss_pred eeeecCCCeEEEEEcCCCC-EEEEEeCCCcEEEEEC----CCCccCCCCCcceeEEecc----------cCCcEEEEEEe
Q 003171 186 ESVKGVSSVMCMVGDEASG-VVWSGHRDGRIMCWKM----NARLLDSDDGFGEVLSWQA----------HRGPVLSLCIS 250 (842)
Q Consensus 186 ~~~~g~~~V~~la~dpdg~-~LaSGs~DGtIrlWdl----~~g~~~~~~~~~~~~~l~g----------H~~~V~slafs 250 (842)
...| .++|.|++|+|+++ +|++|+.||+|++|++ .++.. .-.......+.. |.+.|++++|+
T Consensus 41 ~~~~-~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s 117 (425)
T 1r5m_A 41 EIVK-LDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKK--YWKLTIIAELRHPFALSASSGKTTNQVTCLAWS 117 (425)
T ss_dssp EEEE-CSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC--------CEEEEEEEEEECCCCCC------CBCEEEEEEC
T ss_pred eeec-cCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCccc--cccccccccccccccccccccCCCCceEEEEEc
Confidence 3344 68999999999999 9999999999999999 77610 000002333333 78899999999
Q ss_pred cCCC-EEEeeCCCcEEEEeCCCccceeecCCCceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcCCCCEEEEe
Q 003171 251 SYGD-LWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSA 329 (842)
Q Consensus 251 ~dG~-L~SgS~DgtIrvWd~~t~~~~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~ 329 (842)
|+|+ |++|+.||+|++||... .....+ .+| ...+.++++.+++..++++
T Consensus 118 ~~~~~l~~~~~dg~i~i~~~~~-~~~~~~-------------------~~~----------~~~v~~~~~~~~~~~l~~~ 167 (425)
T 1r5m_A 118 HDGNSIVTGVENGELRLWNKTG-ALLNVL-------------------NFH----------RAPIVSVKWNKDGTHIISM 167 (425)
T ss_dssp TTSSEEEEEETTSCEEEEETTS-CEEEEE-------------------CCC----------CSCEEEEEECTTSSEEEEE
T ss_pred CCCCEEEEEeCCCeEEEEeCCC-Ceeeec-------------------cCC----------CccEEEEEECCCCCEEEEE
Confidence 9998 78999999999999432 211111 111 4467888888888888877
Q ss_pred C-CCcEEEEEccCCcEEEEeecCCceEeeeecccCCCcccccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEE
Q 003171 330 G-FLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRR 408 (842)
Q Consensus 330 s-~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~ 408 (842)
+ +++|++||+.+++.+..+..+.......... ...........+.+.+.+ ..+++..++..+
T Consensus 168 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~-~~~~~~~~g~i~ 230 (425)
T 1r5m_A 168 DVENVTILWNVISGTVMQHFELKETGGSSINAE----------------NHSGDGSLGVDVEWVDDD-KFVIPGPKGAIF 230 (425)
T ss_dssp ETTCCEEEEETTTTEEEEEECCC-------------------------------CCCBSCCEEEETT-EEEEECGGGCEE
T ss_pred ecCCeEEEEECCCCcEEEEeeccccCccceeec----------------cccCCcceeeEEEEcCCC-EEEEEcCCCeEE
Confidence 6 6789999999999988876543221000000 000001112234444443 345666666555
Q ss_pred Eee--cC----ccccCCCceEEEEECCCCc-EEEEeCCCeEEEEcC-CCCeeeeeecCCccEEEEEe--cCCEEEEEecC
Q 003171 409 VAA--KG----GFGDDNRRTEALTTSIDGM-IWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQCLCT--FGSQIWVGYMN 478 (842)
Q Consensus 409 v~~--~g----~~~~~~~~v~al~~s~dg~-l~Sgs~DgtIrlWD~-~g~~l~~l~~H~~~V~sls~--dG~~LasGs~D 478 (842)
++. .+ .+..|...|.+++++|++. +++++.|+.|++||+ +++++..+.+|...|.++++ +| +|++++.|
T Consensus 231 ~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~d 309 (425)
T 1r5m_A 231 VYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGNSQNCFYGHSQSIVSASWVGDD-KVISCSMD 309 (425)
T ss_dssp EEETTCSSCSEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEECSSSBSCSEEECCCSSCEEEEEEETTT-EEEEEETT
T ss_pred EEEcCCCceeeeeccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCccceEecCCCccEEEEEECCCC-EEEEEeCC
Confidence 554 11 2345778899999999987 889999999999999 78899999999999999865 56 99999999
Q ss_pred cEEEEEeCC-CcccccccccccCEEEEEe--CCCEEEEEcCCCCeeeccccC
Q 003171 479 GIVQVLDLE-GNLLGGWVAHSSPVIKMAV--GAGYIFTLANHGGIRGWNVTS 527 (842)
Q Consensus 479 gtIrlWD~~-g~~i~~l~gH~~~V~sla~--dg~~l~S~S~DgtIrvWd~~~ 527 (842)
+.|++||+. ++++..+.+|...|.++++ +++++++++.|+.|++|++..
T Consensus 310 ~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~ 361 (425)
T 1r5m_A 310 GSVRLWSLKQNTLLALSIVDGVPIFAGRISQDGQKYAVAFMDGQVNVYDLKK 361 (425)
T ss_dssp SEEEEEETTTTEEEEEEECTTCCEEEEEECTTSSEEEEEETTSCEEEEECHH
T ss_pred CcEEEEECCCCcEeEecccCCccEEEEEEcCCCCEEEEEECCCeEEEEECCC
Confidence 999999987 7888999999999999884 788999999999999999864
|
| >1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X | Back alignment and structure |
|---|
Probab=99.96 E-value=4.3e-27 Score=261.35 Aligned_cols=289 Identities=11% Similarity=0.097 Sum_probs=210.9
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecC----C---C-EEEeeCCC
Q 003171 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSY----G---D-LWSGSEGG 262 (842)
Q Consensus 191 ~~~V~~la~dpdg~~LaSGs~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~d----G---~-L~SgS~Dg 262 (842)
..+|.|++|+| ++|++|+.||+|++|++.++. ....+.....+.+|..+|++++|+|+ | + |++|+.|+
T Consensus 16 ~~~i~~~~~~~--~~l~s~~~dg~i~iw~~~~~~--~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l~s~~~dg 91 (397)
T 1sq9_A 16 DADIFSVSACN--SFTVSCSGDGYLKVWDNKLLD--NENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFSG 91 (397)
T ss_dssp SSCEEEEEECS--SEEEEEETTSEEEEEESBCCT--TCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEETTS
T ss_pred hcCeEEEEecC--CeEEEEcCCCEEEEEECCCcc--cccCCCcceEEecCCCcEEEEEEecccccCCccccEEEEEcCCC
Confidence 78999999998 899999999999999998861 00112357888999999999999999 8 6 78999999
Q ss_pred cEEEEeCCCccceeecCCCceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEc----CCCCE-EEEeC-CCcEEE
Q 003171 263 GIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSD----HSRAK-VWSAG-FLSFAL 336 (842)
Q Consensus 263 tIrvWd~~t~~~~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~----~~~~~-v~s~s-~~tI~l 336 (842)
+|++|++.+....... ... .+..+... .....+.++++. +++.. +++++ ++.|++
T Consensus 92 ~i~iw~~~~~~~~~~~-----~~~---------~~~~~~~~-----~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~i 152 (397)
T 1sq9_A 92 DLLFYRITREDETKKV-----IFE---------KLDLLDSD-----MKKHSFWALKWGASNDRLLSHRLVATDVKGTTYI 152 (397)
T ss_dssp CEEEEEEEECTTTCCE-----EEE---------EECCSCTT-----GGGSCEEEEEEECCC----CEEEEEEETTSCEEE
T ss_pred CEEEEEccCCcccccc-----cce---------eecccccc-----cCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEE
Confidence 9999999764420000 000 00111000 002467788888 77777 77775 678999
Q ss_pred EEccC------CcEEE-----EeecCCceEeeeecccCCCcccccceEEEEEecCCCCccceeeeEeecCcceEEecCCc
Q 003171 337 WDART------RELLK-----VFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADA 405 (842)
Q Consensus 337 WD~~t------g~~l~-----~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~ 405 (842)
||+.+ ++.+. .+... .. ...........+.+.+++ ..+++..++
T Consensus 153 wd~~~~~~~~~~~~~~~~~~~~~~~~------~~------------------~~~~~~~~i~~~~~~~~~-~l~~~~~dg 207 (397)
T 1sq9_A 153 WKFHPFADESNSLTLNWSPTLELQGT------VE------------------SPMTPSQFATSVDISERG-LIATGFNNG 207 (397)
T ss_dssp EEEESSSSHHHHTTTCCCCEEEEEEE------EC------------------CSSSSCCCCCEEEECTTS-EEEEECTTS
T ss_pred EeCCccccccccceeeccCcceeeee------ec------------------cccCCCCCceEEEECCCc-eEEEEeCCC
Confidence 99988 55433 32210 00 000011122345566666 667777777
Q ss_pred EEEEee--cC----cccc---C---CCceEEEEECCCCc-EEEEeCC---CeEEEEcC-CCCeeeeeec-----------
Q 003171 406 VRRVAA--KG----GFGD---D---NRRTEALTTSIDGM-IWTGGAN---GLLLQWDP-NGNRLQDFQY----------- 457 (842)
Q Consensus 406 v~~v~~--~g----~~~~---~---~~~v~al~~s~dg~-l~Sgs~D---gtIrlWD~-~g~~l~~l~~----------- 457 (842)
..+++. .+ .+.. | ...+.+++++|++. |++|+.| +.|++||+ +++++..+.+
T Consensus 208 ~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~ 287 (397)
T 1sq9_A 208 TVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGE 287 (397)
T ss_dssp EEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CC
T ss_pred cEEEEECCCCceeEEEeccccccccCCccceEEECCCCCEEEEEecCCCCceEEEEECCCCcccceeccCcccccccccc
Confidence 666664 11 2334 6 78899999999987 7899999 99999999 7899999998
Q ss_pred --CCccEEEEEe--cCCEEEEEecCcEEEEEeCC-Cccccccc------cc---------------ccCEEEEEe--CC-
Q 003171 458 --LPFAVQCLCT--FGSQIWVGYMNGIVQVLDLE-GNLLGGWV------AH---------------SSPVIKMAV--GA- 508 (842)
Q Consensus 458 --H~~~V~sls~--dG~~LasGs~DgtIrlWD~~-g~~i~~l~------gH---------------~~~V~sla~--dg- 508 (842)
|...|.++++ +|++|++|+.|++|+|||+. ++++..+. +| ...|.++++ ++
T Consensus 288 ~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~ 367 (397)
T 1sq9_A 288 FAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGW 367 (397)
T ss_dssp BSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTT
T ss_pred cccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCCCceeEEEecccCcccchhhhhccccccccccCCceeEEEeccccc
Confidence 9999999875 68999999999999999997 77888888 88 999999985 55
Q ss_pred ---------CEEEEEcCCCCeeeccccC
Q 003171 509 ---------GYIFTLANHGGIRGWNVTS 527 (842)
Q Consensus 509 ---------~~l~S~S~DgtIrvWd~~~ 527 (842)
+++++++.|+.|++|++.+
T Consensus 368 ~~~~~~~~~~~l~s~~~dg~i~iw~~~~ 395 (397)
T 1sq9_A 368 RSGMGADLNESLCCVCLDRSIRWFREAG 395 (397)
T ss_dssp SBSTTCTTSCEEEEEETTTEEEEEEEEC
T ss_pred cccccccccceEEEecCCCcEEEEEcCC
Confidence 6899999999999999865
|
| >4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* | Back alignment and structure |
|---|
Probab=99.96 E-value=8.8e-28 Score=273.10 Aligned_cols=272 Identities=12% Similarity=0.083 Sum_probs=189.5
Q ss_pred CCCeEEEEEcC-CCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEec-CCC-EEEeeCCCcEEEE
Q 003171 191 VSSVMCMVGDE-ASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISS-YGD-LWSGSEGGGIKIW 267 (842)
Q Consensus 191 ~~~V~~la~dp-dg~~LaSGs~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~-dG~-L~SgS~DgtIrvW 267 (842)
...|+||+|+| ++++||+|+.||+|+|||+.++. ......+.||.++|++|+|+| ++. |+|||.||+||+|
T Consensus 119 ~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~------~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iw 192 (435)
T 4e54_B 119 DRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKD------KPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQ 192 (435)
T ss_dssp SSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCS------CCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEE
T ss_pred CCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCC------ceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEe
Confidence 66899999999 56799999999999999998752 134456789999999999998 565 8899999999999
Q ss_pred eCCCccceeecCCCceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcCCCCEEEEeC-CCcEEEEEccCCcEEE
Q 003171 268 PWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLK 346 (842)
Q Consensus 268 d~~t~~~~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s-~~tI~lWD~~tg~~l~ 346 (842)
|+++......... +. ....+.++++++++..|++++ +++|++||+++. .+.
T Consensus 193 d~~~~~~~~~~~~-------------------~~--------~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~~-~~~ 244 (435)
T 4e54_B 193 DFKGNILRVFASS-------------------DT--------INIWFCSLDVSASSRMVVTGDNVGNVILLNMDGK-ELW 244 (435)
T ss_dssp ETTSCEEEEEECC-------------------SS--------CSCCCCCEEEETTTTEEEEECSSSBEEEEESSSC-BCC
T ss_pred eccCCceeEEecc-------------------CC--------CCccEEEEEECCCCCEEEEEeCCCcEeeeccCcc-eeE
Confidence 9965321111100 00 012244567778888888877 579999998654 345
Q ss_pred EeecCCceEeeeecccCCCcccccceEEEEEecCCCCccceeeeEeecCc-ceEEecCCcEEEEee--c----Cc---cc
Q 003171 347 VFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSR-NAIMGAADAVRRVAA--K----GG---FG 416 (842)
Q Consensus 347 ~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~-~~~~g~~~~v~~v~~--~----g~---~~ 416 (842)
++.+|...+..+. |.+.+. ..+++..++..+++. . .. ..
T Consensus 245 ~~~~h~~~v~~v~-------------------------------~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~ 293 (435)
T 4e54_B 245 NLRMHKKKVTHVA-------------------------------LNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSL 293 (435)
T ss_dssp CSBCCSSCEEEEE-------------------------------ECTTCSSEEEEEETTSBCCEEETTTCCSSSCCSBCC
T ss_pred EEecccceEEeee-------------------------------ecCCCceEEEEecCcceeeEEecccccccceEEEee
Confidence 5555544333333 333332 233455555555543 1 11 23
Q ss_pred cCCCceEEEEECCCCc-EEEEeCCCeEEEEcC-CCCeeeeeecCCcc-------EEE-EEecCCEEEEEe----------
Q 003171 417 DDNRRTEALTTSIDGM-IWTGGANGLLLQWDP-NGNRLQDFQYLPFA-------VQC-LCTFGSQIWVGY---------- 476 (842)
Q Consensus 417 ~~~~~v~al~~s~dg~-l~Sgs~DgtIrlWD~-~g~~l~~l~~H~~~-------V~s-ls~dG~~LasGs---------- 476 (842)
.|...|.+++|+|||. |++|+.||+|++||+ +++++..+..|... +.+ ..+++..+++|.
T Consensus 294 ~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 373 (435)
T 4e54_B 294 PHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGLIPHPHRHFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCT 373 (435)
T ss_dssp BCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSSSSEEEECCCCCCCCSSSCCCBCEECSSSSCEEEECCCCTTSCCSS
T ss_pred eccccccceeECCCCCeeEEEcCCCEEEEEECCCCccceEEecccccccccceeEEEEEcCCCCEEEEEEcCCCCeEEEE
Confidence 5778899999999997 899999999999999 78888877766532 111 123444444443
Q ss_pred --cCcEEEEEeCC-Ccccccc-cccccCEEEEE---eCCCEEEEEcCCCCeeeccccCC
Q 003171 477 --MNGIVQVLDLE-GNLLGGW-VAHSSPVIKMA---VGAGYIFTLANHGGIRGWNVTSP 528 (842)
Q Consensus 477 --~DgtIrlWD~~-g~~i~~l-~gH~~~V~sla---~dg~~l~S~S~DgtIrvWd~~~~ 528 (842)
.+++|++||.. |+++..+ .+|...|.++. ++|++|++|+ |++|++|+++..
T Consensus 374 ~~~~~~i~iwd~~~g~~~~~l~~~~~~~v~s~~~fspdg~~lasg~-d~~i~iW~~~~g 431 (435)
T 4e54_B 374 PYELRTIDVFDGNSGKMMCQLYDPESSGISSLNEFNPMGDTLASAM-GYHILIWSQQEA 431 (435)
T ss_dssp TTCCCCEEEECSSSCCEEEEECCSSCCCCCCEEEECTTSSCEEEEC-SSEEEECCCC--
T ss_pred ecCCCEEEEEECCCCcEEEEEeCCCCCcEEEEEEECCCCCEEEEEc-CCcEEEEECCcC
Confidence 45789999987 7777665 57888888873 4788999876 889999998754
|
| >3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.96 E-value=6.2e-28 Score=266.84 Aligned_cols=267 Identities=10% Similarity=0.041 Sum_probs=189.0
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCCC-EEEeeCCCcEEEEeC
Q 003171 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPW 269 (842)
Q Consensus 191 ~~~V~~la~dpdg~~LaSGs~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~ 269 (842)
.++|.|++|+|++++|++|+.||+|++|++.++. .+....+.+|.++|++++|+|+|+ |++|+.|++|++||+
T Consensus 11 ~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~------~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~ 84 (377)
T 3dwl_C 11 PKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNG------WKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEK 84 (377)
T ss_dssp SSCCSCCEECSSSSEEECCCSSSCBCEEEEETTE------EEECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC--
T ss_pred CCcEEEEEECCCCCEEEEecCCCEEEEEEccCCc------eEEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEc
Confidence 6799999999999999999999999999998751 134567889999999999999997 899999999999999
Q ss_pred CCcc---ceeecCCCceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcCCCCEEEEeC-CCcEEEEEccCCcE-
Q 003171 270 EAIE---KALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTREL- 344 (842)
Q Consensus 270 ~t~~---~~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s-~~tI~lWD~~tg~~- 344 (842)
.++. ....+ .+| ...+.++++++++..+++++ +++|++||+.+++.
T Consensus 85 ~~~~~~~~~~~~-------------------~~~----------~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~ 135 (377)
T 3dwl_C 85 RPDGTWKQTLVL-------------------LRL----------NRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDW 135 (377)
T ss_dssp ----CCCCEEEC-------------------CCC----------SSCEEEEECCTTSSCCEEEESSSCEEECCC-----C
T ss_pred CCCCceeeeeEe-------------------ccc----------CCceEEEEECCCCCEEEEEecCCeEEEEEECCcccc
Confidence 7643 11111 111 45678888888888787776 67999999998873
Q ss_pred --EEEeec-CCceEeeeecccCCCcccccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEee----------
Q 003171 345 --LKVFNI-DGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAA---------- 411 (842)
Q Consensus 345 --l~~l~~-~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~---------- 411 (842)
++.+.. |...+..+.+++. +...+++..++..+++.
T Consensus 136 ~~~~~~~~~h~~~v~~~~~~~~-------------------------------~~~l~~~~~d~~i~iwd~~~~~~~~~~ 184 (377)
T 3dwl_C 136 WVSKHLKRPLRSTILSLDWHPN-------------------------------NVLLAAGCADRKAYVLSAYVRDVDAKP 184 (377)
T ss_dssp CCCEEECSSCCSCEEEEEECTT-------------------------------SSEEEEEESSSCEEEEEECCSSCC-CC
T ss_pred eeeeEeecccCCCeEEEEEcCC-------------------------------CCEEEEEeCCCEEEEEEEEecccCCCc
Confidence 556654 4444444444432 22223333333222221
Q ss_pred --------------cCccccCCCceEEEEECCCCc-EEEEeCCCeEEEEcC-CCCe----eeeeecCCccEEEEE--ecC
Q 003171 412 --------------KGGFGDDNRRTEALTTSIDGM-IWTGGANGLLLQWDP-NGNR----LQDFQYLPFAVQCLC--TFG 469 (842)
Q Consensus 412 --------------~g~~~~~~~~v~al~~s~dg~-l~Sgs~DgtIrlWD~-~g~~----l~~l~~H~~~V~sls--~dG 469 (842)
...+ .|...|.+++++|+|. |++|+.||+|++||+ ++++ +.++.+|..+|.+++ ++|
T Consensus 185 ~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~ 263 (377)
T 3dwl_C 185 EASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSGNALAYAGHDSSVTIAYPSAPEQPPRALITVKLSQLPLRSLLWANES 263 (377)
T ss_dssp CSCSSCSCCCEEEEEECC-CCSSSEEEEEECTTSSCEEEEETTTEEC-CEECSTTSCEEECCCEECSSSCEEEEEEEETT
T ss_pred cccccccccchhhhhhcc-cCCceEEEEEECCCCCEEEEEeCCCcEEEEECCCCCCcceeeEeecCCCCceEEEEEcCCC
Confidence 1123 6778899999999998 899999999999999 6777 889999999999885 589
Q ss_pred CEEEEEecCcEEEEEeCC--C-cccc--------------------------------------------------cccc
Q 003171 470 SQIWVGYMNGIVQVLDLE--G-NLLG--------------------------------------------------GWVA 496 (842)
Q Consensus 470 ~~LasGs~DgtIrlWD~~--g-~~i~--------------------------------------------------~l~g 496 (842)
++|++|+.++.+ +|+.. + ++.. ...+
T Consensus 264 ~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 342 (377)
T 3dwl_C 264 AIVAAGYNYSPI-LLQGNESGWAHTRDLDAGTSKTSFTHTGNTGEGREEEGPVSFTALRSTFRNMDLKGSSQSISSLPTV 342 (377)
T ss_dssp EEEEEESSSSEE-EECCCC---CCSBCCCSCCCCCCBSSSSSBCCCCCC-------------------------CCCSSS
T ss_pred CEEEEEcCCcEE-EEEeCCCceEEEeeecccccccccccccccccccccccccccccccccccchhhccccccccccCcc
Confidence 999999877776 66543 2 1111 1123
Q ss_pred cccCEEEEEe---CCC---EEEEEcCCCCeeeccc
Q 003171 497 HSSPVIKMAV---GAG---YIFTLANHGGIRGWNV 525 (842)
Q Consensus 497 H~~~V~sla~---dg~---~l~S~S~DgtIrvWd~ 525 (842)
|.+.|++|.+ ++. .++|+|.||.|++||+
T Consensus 343 H~~~i~~~~~~~~~~~~~~~~~s~g~Dg~i~iWdl 377 (377)
T 3dwl_C 343 HQNMIATLRPYAGTPGNITAFTSSGTDGRVVLWTL 377 (377)
T ss_dssp CSSCEEEEEEEEEETTEEEEEEEEETTSEEEEECC
T ss_pred ccceeEEEeccCCCCCceEEEEeecCCCcEEEecC
Confidence 9999999984 233 6999999999999985
|
| >2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* | Back alignment and structure |
|---|
Probab=99.96 E-value=2.5e-26 Score=261.02 Aligned_cols=266 Identities=19% Similarity=0.274 Sum_probs=207.5
Q ss_pred CCC-eEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCCCEEEeeCCCcEEEEeC
Q 003171 191 VSS-VMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGDLWSGSEGGGIKIWPW 269 (842)
Q Consensus 191 ~~~-V~~la~dpdg~~LaSGs~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~L~SgS~DgtIrvWd~ 269 (842)
... +.|+.+ +|++|++|+.||+|++||+.++ +....+.+|.++|++++|++ ..|++|+.||+|++||+
T Consensus 118 ~~~v~~~~~~--~g~~l~sg~~dg~i~vwd~~~~--------~~~~~~~~h~~~v~~~~~~~-~~l~s~~~dg~i~vwd~ 186 (445)
T 2ovr_B 118 DDHVITCLQF--CGNRIVSGSDDNTLKVWSAVTG--------KCLRTLVGHTGGVWSSQMRD-NIIISGSTDRTLKVWNA 186 (445)
T ss_dssp TTSCEEEEEE--ETTEEEEEETTSCEEEEETTTC--------CEEEECCCCSSCEEEEEEET-TEEEEEETTSCEEEEET
T ss_pred CCCcEEEEEE--cCCEEEEEECCCcEEEEECCCC--------cEEEEEcCCCCCEEEEEecC-CEEEEEeCCCeEEEEEC
Confidence 444 567666 4799999999999999999987 67888999999999999983 45899999999999999
Q ss_pred CCccceeecCCCceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcCCCCEEEEeC-CCcEEEEEccCCcEEEEe
Q 003171 270 EAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVF 348 (842)
Q Consensus 270 ~t~~~~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s-~~tI~lWD~~tg~~l~~l 348 (842)
.+++....+. +| ...+.++..+ +..+++++ +++|++||+.+++++..+
T Consensus 187 ~~~~~~~~~~-------------------~h----------~~~v~~~~~~--~~~l~s~s~dg~i~~wd~~~~~~~~~~ 235 (445)
T 2ovr_B 187 ETGECIHTLY-------------------GH----------TSTVRCMHLH--EKRVVSGSRDATLRVWDIETGQCLHVL 235 (445)
T ss_dssp TTTEEEEEEC-------------------CC----------SSCEEEEEEE--TTEEEEEETTSEEEEEESSSCCEEEEE
T ss_pred CcCcEEEEEC-------------------CC----------CCcEEEEEec--CCEEEEEeCCCEEEEEECCCCcEEEEE
Confidence 7754322221 11 3346666664 34566555 689999999999998888
Q ss_pred ecCCceEeeeecccCCCcccccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEee--c----CccccCCCce
Q 003171 349 NIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAA--K----GGFGDDNRRT 422 (842)
Q Consensus 349 ~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~--~----g~~~~~~~~v 422 (842)
..|......+.+ ++...+++..++..+++. . ..+..|...|
T Consensus 236 ~~~~~~v~~~~~---------------------------------~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v 282 (445)
T 2ovr_B 236 MGHVAAVRCVQY---------------------------------DGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRV 282 (445)
T ss_dssp ECCSSCEEEEEE---------------------------------CSSCEEEEETTSCEEEEEGGGTEEEEEECCCSSCE
T ss_pred cCCcccEEEEEE---------------------------------CCCEEEEEcCCCEEEEEECCCCcEeEEecCCCCce
Confidence 766543322221 122334555555444443 1 1344577788
Q ss_pred EEEEECCCCcEEEEeCCCeEEEEcC-CCCeeeeeecCCccEEEEEecCCEEEEEecCcEEEEEeCC-Ccccccccc---c
Q 003171 423 EALTTSIDGMIWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQCLCTFGSQIWVGYMNGIVQVLDLE-GNLLGGWVA---H 497 (842)
Q Consensus 423 ~al~~s~dg~l~Sgs~DgtIrlWD~-~g~~l~~l~~H~~~V~sls~dG~~LasGs~DgtIrlWD~~-g~~i~~l~g---H 497 (842)
.++.+ .+..+++|+.|++|++||+ +++++.++.+|...|.++.+++++|++|+.||+|++||+. ++++.++.+ |
T Consensus 283 ~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~ 361 (445)
T 2ovr_B 283 YSLQF-DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKH 361 (445)
T ss_dssp EEEEE-CSSEEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEEEETTEEEEEETTSCEEEEETTTCCEEEEECSTTSC
T ss_pred EEEEE-CCCEEEEEeCCCeEEEEECCCCCEEEEEcCCcccEEEEEEeCCEEEEEeCCCeEEEEECCCCcEEEEEccCCCC
Confidence 88888 3345899999999999999 7999999999999999999999999999999999999986 778888776 8
Q ss_pred ccCEEEEEeCCCEEEEEcCCCCeeeccccCCCCCc
Q 003171 498 SSPVIKMAVGAGYIFTLANHGGIRGWNVTSPGPLD 532 (842)
Q Consensus 498 ~~~V~sla~dg~~l~S~S~DgtIrvWd~~~~~~~d 532 (842)
...|.+++++++++++++.||+|++||+.+...+.
T Consensus 362 ~~~v~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~ 396 (445)
T 2ovr_B 362 QSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEFIR 396 (445)
T ss_dssp SSCEEEEEECSSEEEEEETTSEEEEEETTTCCEEE
T ss_pred CCCEEEEEECCCEEEEEeCCCeEEEEECCCCceee
Confidence 99999999999999999999999999987754433
|
| >3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* | Back alignment and structure |
|---|
Probab=99.95 E-value=1.1e-26 Score=257.78 Aligned_cols=267 Identities=10% Similarity=0.051 Sum_probs=197.4
Q ss_pred CCCeEEEEEcCCC-CEEEEEeCCCcEEEEECCCCccCCCCCcceeEE--ecccCCcEEEEEEec-CCC-EEEeeCCCcEE
Q 003171 191 VSSVMCMVGDEAS-GVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLS--WQAHRGPVLSLCISS-YGD-LWSGSEGGGIK 265 (842)
Q Consensus 191 ~~~V~~la~dpdg-~~LaSGs~DGtIrlWdl~~g~~~~~~~~~~~~~--l~gH~~~V~slafs~-dG~-L~SgS~DgtIr 265 (842)
..+|.|++|+|++ ++|++|+.||+|++||+.++ ..... +.+|.+.|++++|+| ++. |++|+.|++|+
T Consensus 73 ~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~--------~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~ 144 (383)
T 3ei3_B 73 DRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQ--------NKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIRGATT 144 (383)
T ss_dssp SSCEEEEEECSSCTTEEEEEEBTSCEEEEETTST--------TCEEEECCCSTTCBEEEEEEETTEEEEEEEEETTTEEE
T ss_pred CCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCc--------ccceeeecCCcCCceeEEEeCCCCCCEEEEEeCCCEEE
Confidence 7799999999999 99999999999999999986 33333 358999999999999 555 78999999999
Q ss_pred EEeCCCccceeecCCCceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcCCCCEEEEeC-CCcEEEEEccCCcE
Q 003171 266 IWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTREL 344 (842)
Q Consensus 266 vWd~~t~~~~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s-~~tI~lWD~~tg~~ 344 (842)
+||+.+.. ...+... .+ ....+.++++++++..+++++ +++|++||+ ++++
T Consensus 145 iwd~~~~~-~~~~~~~----------------~~----------~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~-~~~~ 196 (383)
T 3ei3_B 145 LRDFSGSV-IQVFAKT----------------DS----------WDYWYCCVDVSVSRQMLATGDSTGRLLLLGL-DGHE 196 (383)
T ss_dssp EEETTSCE-EEEEECC----------------CC----------SSCCEEEEEEETTTTEEEEEETTSEEEEEET-TSCE
T ss_pred EEECCCCc-eEEEecc----------------CC----------CCCCeEEEEECCCCCEEEEECCCCCEEEEEC-CCCE
Confidence 99996421 1111000 00 024578888888888888877 579999999 5777
Q ss_pred EEEeecCCceEeeeecccCCCcccccceEEEEEecCCCCccceeeeEeecCc-ceEEecCCcEEEEee--c----Ccc--
Q 003171 345 LKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSR-NAIMGAADAVRRVAA--K----GGF-- 415 (842)
Q Consensus 345 l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~-~~~~g~~~~v~~v~~--~----g~~-- 415 (842)
+..+..|...+..+.+ .+.+. ..+++..++..+++. . +.+
T Consensus 197 ~~~~~~h~~~v~~~~~-------------------------------~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~ 245 (383)
T 3ei3_B 197 IFKEKLHKAKVTHAEF-------------------------------NPRCDWLMATSSVDATVKLWDLRNIKDKNSYIA 245 (383)
T ss_dssp EEEEECSSSCEEEEEE-------------------------------CSSCTTEEEEEETTSEEEEEEGGGCCSTTCEEE
T ss_pred EEEeccCCCcEEEEEE-------------------------------CCCCCCEEEEEeCCCEEEEEeCCCCCcccceEE
Confidence 7777766554333333 33333 344555555555543 1 111
Q ss_pred -ccCCCceEEEEECC-CCc-EEEEeCCCeEEEEcC-CCCeeeeeecCCc-----------------cEEEE--EecCCEE
Q 003171 416 -GDDNRRTEALTTSI-DGM-IWTGGANGLLLQWDP-NGNRLQDFQYLPF-----------------AVQCL--CTFGSQI 472 (842)
Q Consensus 416 -~~~~~~v~al~~s~-dg~-l~Sgs~DgtIrlWD~-~g~~l~~l~~H~~-----------------~V~sl--s~dG~~L 472 (842)
..|...|.+++++| +|. |++++.|++|++||+ ++++++++.+|.. .+.++ +++|++
T Consensus 246 ~~~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~- 324 (383)
T 3ei3_B 246 EMPHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQL- 324 (383)
T ss_dssp EEECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTSCSEEEECCBCCCTTSCCCCCEECSSSSEEEEECBCCTTT-
T ss_pred EecCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCccccccccccccccccccceEEeccCCCCceEEEecCCccc-
Confidence 24678899999999 887 889999999999999 6888888876642 22223 346666
Q ss_pred EEEecCcEEEEEeCC-Ccccccccc--cccCEEEEE--eCCCEEEEEcCCCCeeeccccC
Q 003171 473 WVGYMNGIVQVLDLE-GNLLGGWVA--HSSPVIKMA--VGAGYIFTLANHGGIRGWNVTS 527 (842)
Q Consensus 473 asGs~DgtIrlWD~~-g~~i~~l~g--H~~~V~sla--~dg~~l~S~S~DgtIrvWd~~~ 527 (842)
+|+.|++|+|||+. ++++.++.+ |.+.|..++ +++++|++++ |++|++|++.+
T Consensus 325 -s~s~d~~i~iwd~~~~~~~~~l~~~~~~~~~~~~~~s~~g~~l~s~s-d~~i~iw~~~~ 382 (383)
T 3ei3_B 325 -LLNDKRTIDIYDANSGGLVHQLRDPNAAGIISLNKFSPTGDVLASGM-GFNILIWNRED 382 (383)
T ss_dssp -CTTCCCCEEEEETTTCCEEEEECBTTBCSCCCEEEECTTSSEEEEEE-TTEEEEEECC-
T ss_pred -ccCCCCeEEEEecCCCceeeeecCCCCCceEEEEEEecCccEEEEec-CCcEEEEecCC
Confidence 77899999999986 788888887 556677666 4889999997 99999999864
|
| >4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.95 E-value=3.4e-26 Score=256.74 Aligned_cols=273 Identities=18% Similarity=0.214 Sum_probs=206.2
Q ss_pred eEEEEecCCEEEE-ecCCCEEEEeCCCCccccccccccccCCCCCCCCCCeeeeeecCCCeEEEEEcCCCCEEEEEeCCC
Q 003171 135 LRTIVCTEEQLWA-GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGHRDG 213 (842)
Q Consensus 135 ~~~l~~~~~~l~~-~~D~~vrvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~V~~la~dpdg~~LaSGs~DG 213 (842)
+..+..+++.+++ +.|+.|++||+.+...... + ...+ ..+|.|++|+|++++|++|+.||
T Consensus 96 ~~~~~~s~~~l~~~~~d~~v~lw~~~~~~~~~~-----------------~-~~~~-~~~v~~v~~s~~~~~l~~~~~dg 156 (401)
T 4aez_A 96 LNLLDWSNLNVVAVALERNVYVWNADSGSVSAL-----------------A-ETDE-STYVASVKWSHDGSFLSVGLGNG 156 (401)
T ss_dssp CBCEEECTTSEEEEEETTEEEEEETTTCCEEEE-----------------E-ECCT-TCCEEEEEECTTSSEEEEEETTS
T ss_pred EEEEeecCCCEEEEECCCeEEEeeCCCCcEeEe-----------------e-ecCC-CCCEEEEEECCCCCEEEEECCCC
Confidence 3345555665555 6799999999976543211 1 1113 67899999999999999999999
Q ss_pred cEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCCCEEEeeCCCcEEEEeCCCccceeecCCCceeeeEEEEeec
Q 003171 214 RIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGDLWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERS 293 (842)
Q Consensus 214 tIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~L~SgS~DgtIrvWd~~t~~~~l~~~~~~~~~~~l~~~~s 293 (842)
+|++||+.++ +....+.+|.+.|.+++|++ ..|++|+.|++|++||+.........
T Consensus 157 ~i~iwd~~~~--------~~~~~~~~~~~~v~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~--------------- 212 (401)
T 4aez_A 157 LVDIYDVESQ--------TKLRTMAGHQARVGCLSWNR-HVLSSGSRSGAIHHHDVRIANHQIGT--------------- 212 (401)
T ss_dssp CEEEEETTTC--------CEEEEECCCSSCEEEEEEET-TEEEEEETTSEEEEEETTSSSCEEEE---------------
T ss_pred eEEEEECcCC--------eEEEEecCCCCceEEEEECC-CEEEEEcCCCCEEEEecccCcceeeE---------------
Confidence 9999999987 67888999999999999954 24889999999999999743211100
Q ss_pred eeecccceeccceeeeecCCEEEEEEcCCCCEEEEeC-CCcEEEEEccCCcEEEEeecCCceEeeeecccCCCcccccce
Q 003171 294 YIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEF 372 (842)
Q Consensus 294 ~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s-~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~ 372 (842)
+.+| ...+.++++++++..+++++ +++|++||+.+++++..+..
T Consensus 213 ---~~~~----------~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~---------------------- 257 (401)
T 4aez_A 213 ---LQGH----------SSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTKTN---------------------- 257 (401)
T ss_dssp ---EECC----------SSCEEEEEECTTSSEEEEEETTSCEEEEETTCSSEEEEECC----------------------
T ss_pred ---EcCC----------CCCeeEEEEcCCCCEEEEEeCCCeEEEccCCCCCccEEecC----------------------
Confidence 1112 45678888888888888877 68999999998776554432
Q ss_pred EEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEeecCccccCCCceEEEEECCCCc--EEEEe--CCCeEEEEcC-
Q 003171 373 KTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGM--IWTGG--ANGLLLQWDP- 447 (842)
Q Consensus 373 ~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~al~~s~dg~--l~Sgs--~DgtIrlWD~- 447 (842)
|...|.+++++|++. +++|+ .|++|++||+
T Consensus 258 ---------------------------------------------~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~ 292 (401)
T 4aez_A 258 ---------------------------------------------HNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAA 292 (401)
T ss_dssp ---------------------------------------------CSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETT
T ss_pred ---------------------------------------------CcceEEEEEECCCCCCEEEEecCCCCCEEEEEECC
Confidence 223345677888664 45554 6999999999
Q ss_pred CCCeeeeeecCCccEEEEEe--cCCEEEE--EecCcEEEEEeCC-Ccc--cccccccccCEEEEEe--CCCEEEEEcCCC
Q 003171 448 NGNRLQDFQYLPFAVQCLCT--FGSQIWV--GYMNGIVQVLDLE-GNL--LGGWVAHSSPVIKMAV--GAGYIFTLANHG 518 (842)
Q Consensus 448 ~g~~l~~l~~H~~~V~sls~--dG~~Las--Gs~DgtIrlWD~~-g~~--i~~l~gH~~~V~sla~--dg~~l~S~S~Dg 518 (842)
+++++..+. |...|.++++ +|++|++ |+.||.|+|||+. ++. ...+.+|.+.|.++++ +++++++++.|+
T Consensus 293 ~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~~~dg 371 (401)
T 4aez_A 293 TGARVNTVD-AGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDTRVLYSALSPDGRILSTAASDE 371 (401)
T ss_dssp TCCEEEEEE-CSSCEEEEEECSSSSEEEEEECTTTCEEEEEEEETTEEEEEEEEECCSSCCCEEEECTTSSEEEEECTTS
T ss_pred CCCEEEEEe-CCCcEEEEEECCCCCeEEEEeecCCCcEEEEecCCccceeEEEecCCCCCEEEEEECCCCCEEEEEeCCC
Confidence 788888886 5678998865 7889988 5589999999986 433 4457899999999884 788999999999
Q ss_pred CeeeccccCCCCC
Q 003171 519 GIRGWNVTSPGPL 531 (842)
Q Consensus 519 tIrvWd~~~~~~~ 531 (842)
+|++|++.....+
T Consensus 372 ~i~iw~~~~~~~~ 384 (401)
T 4aez_A 372 NLKFWRVYDGDHV 384 (401)
T ss_dssp EEEEEECCC----
T ss_pred cEEEEECCCCccc
Confidence 9999998765443
|
| >3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A | Back alignment and structure |
|---|
Probab=99.95 E-value=7.2e-27 Score=251.61 Aligned_cols=262 Identities=15% Similarity=0.167 Sum_probs=178.7
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEec--CCC-EEEeeCCCcEEEE
Q 003171 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISS--YGD-LWSGSEGGGIKIW 267 (842)
Q Consensus 191 ~~~V~~la~dpdg~~LaSGs~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~--dG~-L~SgS~DgtIrvW 267 (842)
..+|.|++|+|++++|++|+.||+|++||+.++. ...+....+.+|.++|++|+|+| +++ |++|+.||+|++|
T Consensus 11 ~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~----~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~vw 86 (351)
T 3f3f_A 11 DDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDT----SNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVKLW 86 (351)
T ss_dssp SSCEEEEEECSSSSEEEEEETTSEEEEEEECSSS----CCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEEEE
T ss_pred ccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCC----CcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEEEE
Confidence 7899999999999999999999999999998752 22235667889999999999999 576 7899999999999
Q ss_pred eCCCccceeecCCCceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcCC--CCEEEEeC-CCcEEEEEccCCcE
Q 003171 268 PWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHS--RAKVWSAG-FLSFALWDARTREL 344 (842)
Q Consensus 268 d~~t~~~~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~--~~~v~s~s-~~tI~lWD~~tg~~ 344 (842)
|+.++........ ..... .+.+| ...+..+++.++ +..+++++ +++|++||+.+++.
T Consensus 87 d~~~~~~~~~~~~-~~~~~---------~~~~~----------~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~ 146 (351)
T 3f3f_A 87 EEDPDQEECSGRR-WNKLC---------TLNDS----------KGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSD 146 (351)
T ss_dssp EECTTSCTTSSCS-EEEEE---------EECCC----------SSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTC
T ss_pred ecCCCcccccccC-cceee---------eeccc----------CCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHH
Confidence 9976432110000 00000 01111 456788888887 77777766 67899999998876
Q ss_pred EEEeecCCceEeeeecccCCCcccccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEeecCccccCCCceEE
Q 003171 345 LKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEA 424 (842)
Q Consensus 345 l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~a 424 (842)
+..+...... ... .+ ....+...+.+
T Consensus 147 ~~~~~~~~~~-----------------------~~~---------~~----------------------~~~~~~~~~~~ 172 (351)
T 3f3f_A 147 LRSWTLTSEM-----------------------KVL---------SI----------------------PPANHLQSDFC 172 (351)
T ss_dssp TTCCEEEEEE-----------------------ESC---------SC----------------------CCSSCSCCCEE
T ss_pred hccccccccc-----------------------ccc---------cc----------------------ccCCcccceeE
Confidence 4333211000 000 00 01123334555
Q ss_pred EEECCC---Cc-EEEEeCCCeEEEEcC-CCCe--eeeeecCCccEEEEEe--cC----CEEEEEecCcEEEEEeCCC---
Q 003171 425 LTTSID---GM-IWTGGANGLLLQWDP-NGNR--LQDFQYLPFAVQCLCT--FG----SQIWVGYMNGIVQVLDLEG--- 488 (842)
Q Consensus 425 l~~s~d---g~-l~Sgs~DgtIrlWD~-~g~~--l~~l~~H~~~V~sls~--dG----~~LasGs~DgtIrlWD~~g--- 488 (842)
++++|+ +. +++++.|+.+.+|+. .++. +..+.+|...|+++++ +| ++|++|+.||+|++||+..
T Consensus 173 ~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~ 252 (351)
T 3f3f_A 173 LSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRIFKITEKLS 252 (351)
T ss_dssp EEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSEEEEEEETTSCEEEEEEEECC-
T ss_pred EEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcceEEEEEcCCCeEEEEeCCCCcC
Confidence 666664 33 566666666666655 3332 5556666667766653 44 4666777777777776542
Q ss_pred --------------------------------------------cccccccccccCEEEEEe--CCCEEEEEcCCCCeee
Q 003171 489 --------------------------------------------NLLGGWVAHSSPVIKMAV--GAGYIFTLANHGGIRG 522 (842)
Q Consensus 489 --------------------------------------------~~i~~l~gH~~~V~sla~--dg~~l~S~S~DgtIrv 522 (842)
+++..+.+|.+.|+++++ ++++|+|++.|+.|++
T Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~i 332 (351)
T 3f3f_A 253 PLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVWSVSWNLTGTILSSAGDDGKVRL 332 (351)
T ss_dssp --------------------------------------CCSEEEEEEEEECTTSSCEEEEEECSSSCCEEEEETTSCEEE
T ss_pred ccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEEEecccccEEEEEEcCCCCEEEEecCCCcEEE
Confidence 567888999999999985 7889999999999999
Q ss_pred ccccCCCC
Q 003171 523 WNVTSPGP 530 (842)
Q Consensus 523 Wd~~~~~~ 530 (842)
|++.....
T Consensus 333 w~~~~~~~ 340 (351)
T 3f3f_A 333 WKATYSNE 340 (351)
T ss_dssp EEECTTSC
T ss_pred EecCcCcc
Confidence 99876543
|
| >4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ... | Back alignment and structure |
|---|
Probab=99.95 E-value=1.9e-25 Score=240.93 Aligned_cols=267 Identities=14% Similarity=0.173 Sum_probs=195.0
Q ss_pred ceeEEEEecCC--EEEE-ecCCCEEEEeCCCCccccccccccccCCCCCCCCCCeeeeeecCCCeEEEEEcCCCCEEEEE
Q 003171 133 CFLRTIVCTEE--QLWA-GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSG 209 (842)
Q Consensus 133 ~~~~~l~~~~~--~l~~-~~D~~vrvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~V~~la~dpdg~~LaSG 209 (842)
..+.+++...+ .|.+ +.|+.|++||+.+...... ...| ..+|.+++|+|++++|++|
T Consensus 24 ~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~-------------------~~~h-~~~v~~~~~~~~~~~l~s~ 83 (312)
T 4ery_A 24 KAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKT-------------------ISGH-KLGISDVAWSSDSNLLVSA 83 (312)
T ss_dssp SCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEE-------------------ECCC-SSCEEEEEECTTSSEEEEE
T ss_pred CcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcccchh-------------------hccC-CCceEEEEEcCCCCEEEEE
Confidence 35667776643 4554 5699999999875432210 1123 7789999999999999999
Q ss_pred eCCCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCCC-EEEeeCCCcEEEEeCCCccceeecCCCceeeeEE
Q 003171 210 HRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEKALSLKPEERHTAAL 288 (842)
Q Consensus 210 s~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~~t~~~~l~~~~~~~~~~~l 288 (842)
+.||+|++||+.++ +.+..+++|.+.|.+++|+|++. |++|+.|++|++||+.+++....+.
T Consensus 84 ~~d~~i~vwd~~~~--------~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~--------- 146 (312)
T 4ery_A 84 SDDKTLKIWDVSSG--------KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLP--------- 146 (312)
T ss_dssp ETTSEEEEEETTTC--------CEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEEC---------
T ss_pred CCCCEEEEEECCCC--------cEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEEEEEec---------
Confidence 99999999999987 67788999999999999999998 7899999999999997654322211
Q ss_pred EEeeceeecccceeccceeeeecCCEEEEEEcCCCCEEEEeC-CCcEEEEEccCCcEEEEeecC-CceEeeeecccCCCc
Q 003171 289 IVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVFNID-GQIENRVDMSLLPDF 366 (842)
Q Consensus 289 ~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s-~~tI~lWD~~tg~~l~~l~~~-~~~~~~~~~s~~~~~ 366 (842)
.| ...+..+++++++..+++++ +++|++||+.+++++..+..+ .....
T Consensus 147 ----------~~----------~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~---------- 196 (312)
T 4ery_A 147 ----------AH----------SDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVS---------- 196 (312)
T ss_dssp ----------CC----------SSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCSSCCCEE----------
T ss_pred ----------CC----------CCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeEEeccCCCceE----------
Confidence 11 34577788888888888776 679999999999887765321 11111
Q ss_pred ccccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEee--cC----ccccCCCc---eEEEEECCCCc-EEEE
Q 003171 367 AMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAA--KG----GFGDDNRR---TEALTTSIDGM-IWTG 436 (842)
Q Consensus 367 ~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~--~g----~~~~~~~~---v~al~~s~dg~-l~Sg 436 (842)
.+.|.+++...+.+..++..+++. .+ .+..+... +......+++. +++|
T Consensus 197 ---------------------~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg 255 (312)
T 4ery_A 197 ---------------------FVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSG 255 (312)
T ss_dssp ---------------------EEEECTTSSEEEEEETTTEEEEEETTTTEEEEEECSSCCSSSCCCEEEECSSSCEEEEC
T ss_pred ---------------------EEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEEecCCceEEEEEEEEeCCCcEEEEE
Confidence 233444445556666666666554 11 12223222 22233345555 8999
Q ss_pred eCCCeEEEEcC-CCCeeeeeecCCccEEEEEe--cCCEEEEEe--cCcEEEEEeCC
Q 003171 437 GANGLLLQWDP-NGNRLQDFQYLPFAVQCLCT--FGSQIWVGY--MNGIVQVLDLE 487 (842)
Q Consensus 437 s~DgtIrlWD~-~g~~l~~l~~H~~~V~sls~--dG~~LasGs--~DgtIrlWD~~ 487 (842)
+.||+|++||+ ++++++++.+|...|.++++ ++.+|++++ .|++|++|+.+
T Consensus 256 ~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~~~d~~i~~W~~d 311 (312)
T 4ery_A 256 SEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSD 311 (312)
T ss_dssp CTTSCEEEEETTTCCEEEEECCCSSCEEEEEECSSSSEEEEEECTTTCCEEEEECC
T ss_pred CCCCEEEEEECCCchhhhhhhccCCcEEEEeecCcCCceEEEEccCCccEEEecCC
Confidence 99999999999 78999999999999999865 688999987 69999999864
|
| >3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.95 E-value=6e-27 Score=264.83 Aligned_cols=280 Identities=13% Similarity=0.157 Sum_probs=196.2
Q ss_pred CCCeEEEEEcC-CCCEEEEEeCCCcEEEEECCC---CccCCCCCcceeEEecccCCcEEEEEEecCCC-EEEeeCCCcEE
Q 003171 191 VSSVMCMVGDE-ASGVVWSGHRDGRIMCWKMNA---RLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIK 265 (842)
Q Consensus 191 ~~~V~~la~dp-dg~~LaSGs~DGtIrlWdl~~---g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIr 265 (842)
.++|.|++|+| ++++|+||+.||+|++||+.+ +. ..+....+ +|.++|++|+|+|++. |++|+.||+|+
T Consensus 63 ~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~-----~~~~~~~~-~h~~~v~~~~~~~~~~~l~s~s~dg~i~ 136 (437)
T 3gre_A 63 PNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGE-----VYSSSLTY-DCSSTVTQITMIPNFDAFAVSSKDGQII 136 (437)
T ss_dssp TSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTC-----CCSCSEEE-ECSSCEEEEEECTTSSEEEEEETTSEEE
T ss_pred CCceEEEEECCCCCCEEEEecCCceEEEeECcccccCc-----ccceeeec-cCCCCEEEEEEeCCCCEEEEEeCCCEEE
Confidence 78999999999 999999999999999999876 31 11223333 6999999999999987 78999999999
Q ss_pred EEeCC---CccceeecCCCceeeeEEEEeeceeecccceeccceeeeecCCEEEEE--EcCCCCEEEEeC-CCcEEEEEc
Q 003171 266 IWPWE---AIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLL--SDHSRAKVWSAG-FLSFALWDA 339 (842)
Q Consensus 266 vWd~~---t~~~~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~la--s~~~~~~v~s~s-~~tI~lWD~ 339 (842)
+||++ ++........+ .+..+ .+. ..+ ....+.++. ..+++..+++++ +++|++||+
T Consensus 137 vwd~~~~~~~~~~~~~~~~--~i~~~-------~~~----~~~----~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~ 199 (437)
T 3gre_A 137 VLKVNHYQQESEVKFLNCE--CIRKI-------NLK----NFG----KNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDI 199 (437)
T ss_dssp EEEEEEEEETTEEEEEEEE--EEEEE-------EGG----GGS----SCCCEEEEEEEECSSCEEEEEEETTSEEEEEET
T ss_pred EEEeccccCCceeeccccc--eeEEE-------Ecc----Ccc----cccCceEEEEEEcCCCCEEEEEeCCCeEEEEeC
Confidence 99985 22211111000 11100 000 000 122344444 345666777776 579999999
Q ss_pred cCCcEEEEeec--CCceEeeeecccCCCcccccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEee--cC--
Q 003171 340 RTRELLKVFNI--DGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAA--KG-- 413 (842)
Q Consensus 340 ~tg~~l~~l~~--~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~--~g-- 413 (842)
++++++.++.. |...+. ++.|.+++...++|..++..+++. .+
T Consensus 200 ~~~~~~~~~~~~~h~~~v~-------------------------------~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~ 248 (437)
T 3gre_A 200 RTLERLQIIENSPRHGAVS-------------------------------SICIDEECCVLILGTTRGIIDIWDIRFNVL 248 (437)
T ss_dssp TTCCEEEEEECCGGGCCEE-------------------------------EEEECTTSCEEEEEETTSCEEEEETTTTEE
T ss_pred CCCeeeEEEccCCCCCceE-------------------------------EEEECCCCCEEEEEcCCCeEEEEEcCCccE
Confidence 99999888875 222222 233444445556666677666654 12
Q ss_pred --ccc-cCCCceEEEEE----CCCCc-EEEEeCCCeEEEEcC-CCCeeeeeecC--------------------------
Q 003171 414 --GFG-DDNRRTEALTT----SIDGM-IWTGGANGLLLQWDP-NGNRLQDFQYL-------------------------- 458 (842)
Q Consensus 414 --~~~-~~~~~v~al~~----s~dg~-l~Sgs~DgtIrlWD~-~g~~l~~l~~H-------------------------- 458 (842)
.+. .+...|.++++ ++++. |++|+.||+|++||+ ++++++++.+|
T Consensus 249 ~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 328 (437)
T 3gre_A 249 IRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRS 328 (437)
T ss_dssp EEEEBCTTCEEEEEEEECTTTCTTEEEEEEESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCS
T ss_pred EEEEecCCCCceEEEEeccccCCCccEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceeccccc
Confidence 122 45567888854 45675 889999999999999 68888877754
Q ss_pred CccEEEEEe-cCCEEEEEecCcEEEEEeCC-Ccccccccc-------------------------------------ccc
Q 003171 459 PFAVQCLCT-FGSQIWVGYMNGIVQVLDLE-GNLLGGWVA-------------------------------------HSS 499 (842)
Q Consensus 459 ~~~V~sls~-dG~~LasGs~DgtIrlWD~~-g~~i~~l~g-------------------------------------H~~ 499 (842)
...|+++++ ++++|++|+.|++|++||+. ++++..+.+ |.+
T Consensus 329 ~~~v~~l~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 408 (437)
T 3gre_A 329 LNALSTISVSNDKILLTDEATSSIVMFSLNELSSSKAVISPSRFSDVFIPTQVTANLTMLLRKMKRTSTHSVDDSLYHHD 408 (437)
T ss_dssp GGGGCCEEEETTEEEEEEGGGTEEEEEETTCGGGCEEEECC--CCCEEEEEEEETTEEEEEEECC-------------CC
T ss_pred CCceEEEEECCceEEEecCCCCeEEEEECCCcccceEEecccccCceEEEEEeecceEEEEEecccccccccCccccccc
Confidence 455777765 56799999999999999987 666666655 899
Q ss_pred CEEEEEe--C--CCEEEEEcCCCCeeecc
Q 003171 500 PVIKMAV--G--AGYIFTLANHGGIRGWN 524 (842)
Q Consensus 500 ~V~sla~--d--g~~l~S~S~DgtIrvWd 524 (842)
.|++|++ + +.+|+|++.||.|++|+
T Consensus 409 ~I~~i~~~~~~~~~~l~s~~~dG~I~iw~ 437 (437)
T 3gre_A 409 IINSISTCEVDETPLLVACDNSGLIGIFQ 437 (437)
T ss_dssp CEEEEEEEESSSSEEEEEEETTSCEEEEC
T ss_pred ceeeEeeeccCCceEEEEEcCCceEEEeC
Confidence 9999874 4 56899999999999995
|
| >3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} | Back alignment and structure |
|---|
Probab=99.95 E-value=5.5e-27 Score=261.83 Aligned_cols=279 Identities=18% Similarity=0.228 Sum_probs=198.3
Q ss_pred eeEEEEec--CCEEEE-ecCCCEEEEeCCCCccccccccccccCCCCCCCCCCeeeeeecCCCeEEEEEcCCCCEEEEEe
Q 003171 134 FLRTIVCT--EEQLWA-GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGH 210 (842)
Q Consensus 134 ~~~~l~~~--~~~l~~-~~D~~vrvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~V~~la~dpdg~~LaSGs 210 (842)
.+.+++.. ++.|.+ +.|++|+|||+.+..... ....| ..+|.+++|+|+|++|++|+
T Consensus 68 ~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~-------------------~~~~h-~~~v~~~~~s~~g~~las~~ 127 (380)
T 3iz6_a 68 KVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTH-------------------AIKLH-CPWVMECAFAPNGQSVACGG 127 (380)
T ss_dssp CEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEE-------------------EEECC-CTTCCCCEECTTSSEEEECC
T ss_pred EEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccce-------------------EEecC-CCCEEEEEECCCCCEEEEee
Confidence 46677765 335555 569999999987643221 11233 77899999999999999999
Q ss_pred CCCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCC--CEEEeeCCCcEEEEeCCCccceeecCCCceeeeEE
Q 003171 211 RDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYG--DLWSGSEGGGIKIWPWEAIEKALSLKPEERHTAAL 288 (842)
Q Consensus 211 ~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG--~L~SgS~DgtIrvWd~~t~~~~l~~~~~~~~~~~l 288 (842)
.|++|++|++.+... ..........+.||.+.|.+++|+|++ .|+|||.|++|++||+.++.....+....
T Consensus 128 ~d~~v~iw~~~~~~~-~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~------ 200 (380)
T 3iz6_a 128 LDSACSIFNLSSQAD-RDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEF------ 200 (380)
T ss_dssp SSSCCEEEECCCCSS-CCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCS------
T ss_pred CCCcEEEEECCCCcc-ccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeeccc------
Confidence 999999999976420 011123345678999999999999975 38999999999999998754332221000
Q ss_pred EEeeceeecccceeccceeeeecCCEEEEEEcC-CCCEEEEeC-CCcEEEEEcc-CCcEEEEeecCCceEeeeecccCCC
Q 003171 289 IVERSYIDLRSHLSVNGFSSILTSDIKNLLSDH-SRAKVWSAG-FLSFALWDAR-TRELLKVFNIDGQIENRVDMSLLPD 365 (842)
Q Consensus 289 ~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~-~~~~v~s~s-~~tI~lWD~~-tg~~l~~l~~~~~~~~~~~~s~~~~ 365 (842)
..+| ...+..+...+ ++..+++++ |++|++||++ +++++.++.+|...++.
T Consensus 201 --------~~~h----------~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~-------- 254 (380)
T 3iz6_a 201 --------PSGH----------TADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINS-------- 254 (380)
T ss_dssp --------SSSC----------CSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCE--------
T ss_pred --------CCCC----------ccCeEEEEeecCCCCEEEEEECCCeEEEEECCCCCcceEEECCcCCCeEE--------
Confidence 0011 44677777755 566777776 6899999997 45666777666543333
Q ss_pred cccccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEee--cCc----cc-------cCCCceEEEEECCCCc
Q 003171 366 FAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAA--KGG----FG-------DDNRRTEALTTSIDGM 432 (842)
Q Consensus 366 ~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~--~g~----~~-------~~~~~v~al~~s~dg~ 432 (842)
+.|.+++...++|..|+..++|. .+. +. .+...|.+++|+|+|.
T Consensus 255 -----------------------v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~ 311 (380)
T 3iz6_a 255 -----------------------VKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGR 311 (380)
T ss_dssp -----------------------EEECTTSSEEEEECSSSCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECSSSS
T ss_pred -----------------------EEEecCCCeEEEEcCCCeEEEEECCCCcEEEEecccccccccccCceEEEEECCCCC
Confidence 33444444455666666555554 111 11 1223478999999998
Q ss_pred -EEEEeCCCeEEEEcC-CCCeeeee----ecCCccEEEEE--ecCCEEEEEecCcEEEEEeCCC
Q 003171 433 -IWTGGANGLLLQWDP-NGNRLQDF----QYLPFAVQCLC--TFGSQIWVGYMNGIVQVLDLEG 488 (842)
Q Consensus 433 -l~Sgs~DgtIrlWD~-~g~~l~~l----~~H~~~V~sls--~dG~~LasGs~DgtIrlWD~~g 488 (842)
|++|+.||+|++||. .++++..+ .+|...|++++ ++|++|++|+.|++|+|||+.+
T Consensus 312 ~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~iW~~~~ 375 (380)
T 3iz6_a 312 LLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSDGSALCTGSWDKNLKIWAFSG 375 (380)
T ss_dssp EEEEECTTSCEEEEETTTCCEEEEECCSCSSCCCCCCEEEECSSSSEEEEECTTSCEEEEECCS
T ss_pred EEEEEECCCCEEEEECCCCceEEEEecccCCCCCceEEEEECCCCCEEEEeeCCCCEEEEecCC
Confidence 789999999999999 78887776 68999999986 4799999999999999999874
|
| >1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A | Back alignment and structure |
|---|
Probab=99.95 E-value=5.4e-26 Score=266.83 Aligned_cols=305 Identities=16% Similarity=0.148 Sum_probs=226.2
Q ss_pred cCCEEEEecCCCEEEEeCCCCccccccccccccCCCCCCCCCCeeeeeecCCC-eEEEEEcC--CCCEEEEEeCCCcEEE
Q 003171 141 TEEQLWAGGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSS-VMCMVGDE--ASGVVWSGHRDGRIMC 217 (842)
Q Consensus 141 ~~~~l~~~~D~~vrvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-V~~la~dp--dg~~LaSGs~DGtIrl 217 (842)
+++.|.++.++.|+|||+++..... ........| ..+ |.|++|+| ++++|++|+.||+|++
T Consensus 29 dg~~l~~~~~~~v~v~~~~~~~~~~---------------~~~~~~~~h-~~~~v~~~~~sp~~~~~~l~s~~~dg~v~v 92 (615)
T 1pgu_A 29 TTNAIAYPCGKSAFVRCLDDGDSKV---------------PPVVQFTGH-GSSVVTTVKFSPIKGSQYLCSGDESGKVIV 92 (615)
T ss_dssp TTTEEEEEETTEEEEEECCSSCCSS---------------CSEEEECTT-TTSCEEEEEECSSTTCCEEEEEETTSEEEE
T ss_pred CCCEEEEecCCeEEEEECCCCCCcc---------------ccceEEecC-CCceEEEEEECcCCCCCEEEEecCCCEEEE
Confidence 4556777779999999998641110 000111123 778 99999999 9999999999999999
Q ss_pred EECCCCccCCCCCcceeEEecccCCcEEEEEEecCCC-EEEeeCC----CcEEEEeCCCccceeecCCCceeeeEEEEee
Q 003171 218 WKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEG----GGIKIWPWEAIEKALSLKPEERHTAALIVER 292 (842)
Q Consensus 218 Wdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~D----gtIrvWd~~t~~~~l~~~~~~~~~~~l~~~~ 292 (842)
||+.++.............+.+|.++|++++|+|+|+ |++++.| +.|++||. ......+
T Consensus 93 w~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d~--~~~~~~~-------------- 156 (615)
T 1pgu_A 93 WGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDS--GNSLGEV-------------- 156 (615)
T ss_dssp EEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETTT--CCEEEEC--------------
T ss_pred EeCCCCcccccccccccchhhcccccEEEEEEeCCCCEEEEeccCCCCccEEEEEEC--CCcceee--------------
Confidence 9996430000000145667889999999999999998 7888887 68888884 2221111
Q ss_pred ceeecccceeccceeeeecCCEEEEEEcCCCC-EEEEeC-CCcEEEEEccCCcEEEEeecCCc---eEeeeecccCCCcc
Q 003171 293 SYIDLRSHLSVNGFSSILTSDIKNLLSDHSRA-KVWSAG-FLSFALWDARTRELLKVFNIDGQ---IENRVDMSLLPDFA 367 (842)
Q Consensus 293 s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~-~v~s~s-~~tI~lWD~~tg~~l~~l~~~~~---~~~~~~~s~~~~~~ 367 (842)
.+| ...+.++++.+++. .+++++ +++|++||+.+++++..+..|.. ....
T Consensus 157 -----~~~----------~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~---------- 211 (615)
T 1pgu_A 157 -----SGH----------SQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRD---------- 211 (615)
T ss_dssp -----CSC----------SSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEE----------
T ss_pred -----ecC----------CccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCcceeeeecccCCCCceEEE----------
Confidence 112 44677888888776 677666 67999999999999888876544 2222
Q ss_pred cccceEEEEEecCCCCccceeeeEeec-CcceEEecCCcEEEEee--cC----cc-c---cCCCceEEEEECCCCc-EEE
Q 003171 368 MEDEFKTKIVTSSKKDKAQSSFGFFQR-SRNAIMGAADAVRRVAA--KG----GF-G---DDNRRTEALTTSIDGM-IWT 435 (842)
Q Consensus 368 ~~~~~~~~~~s~~~~~~~~~s~~~~~~-~~~~~~g~~~~v~~v~~--~g----~~-~---~~~~~v~al~~s~dg~-l~S 435 (842)
+.|.++ +...+++..++..+++. .+ .+ . .|...|.+++++ ++. +++
T Consensus 212 ---------------------~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~ 269 (615)
T 1pgu_A 212 ---------------------VEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWL-DSQKFAT 269 (615)
T ss_dssp ---------------------EEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEES-SSSEEEE
T ss_pred ---------------------EEECCCCCCEEEEEeCCCeEEEEECCCCCEeEEecccccccCCceEEEEEc-CCCEEEE
Confidence 344444 44455566665555553 11 23 3 677889999999 776 899
Q ss_pred EeCCCeEEEEcC-CCCeeeeeecC----CccEEEEE-ecCCEEEEEecCcEEEEEeCC-CcccccccccccCEEEEEeCC
Q 003171 436 GGANGLLLQWDP-NGNRLQDFQYL----PFAVQCLC-TFGSQIWVGYMNGIVQVLDLE-GNLLGGWVAHSSPVIKMAVGA 508 (842)
Q Consensus 436 gs~DgtIrlWD~-~g~~l~~l~~H----~~~V~sls-~dG~~LasGs~DgtIrlWD~~-g~~i~~l~gH~~~V~sla~dg 508 (842)
++.|++|++||+ +++++..+..| ...+.++. ++++++++|+.|+.|++||+. ++++..+.+|.+.|.++++ +
T Consensus 270 ~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~v~~~~~-~ 348 (615)
T 1pgu_A 270 VGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYELGHDEVLKTISGHNKGITALTV-N 348 (615)
T ss_dssp EETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEEETTEEEEEETTSCEEEEETTEEEEEEEECCCSSCEEEEET-T
T ss_pred EcCCCcEEEEECCCCcEEEEEcCCCCcccCceeEEEeCCCCeEEEEECCCCEEEEECCCCcEEEEEeCCCCCEEEEEe-c
Confidence 999999999999 68899888876 35666664 489999999999999999998 7788999999999999999 8
Q ss_pred CEEEEEcCCCCeeecccc
Q 003171 509 GYIFTLANHGGIRGWNVT 526 (842)
Q Consensus 509 ~~l~S~S~DgtIrvWd~~ 526 (842)
. +++++.|+.|++|++.
T Consensus 349 ~-l~~~~~dg~i~~w~~~ 365 (615)
T 1pgu_A 349 P-LISGSYDGRIMEWSSS 365 (615)
T ss_dssp T-TEEEETTSCEEETTTT
T ss_pred C-cEEECCCCeEEEEEch
Confidence 8 9999999999999975
|
| >4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.2e-26 Score=257.23 Aligned_cols=275 Identities=14% Similarity=0.114 Sum_probs=194.5
Q ss_pred CCCeEEEEEcC-CCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEe-------------cccCCcEEEEEEec-CCC-
Q 003171 191 VSSVMCMVGDE-ASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSW-------------QAHRGPVLSLCISS-YGD- 254 (842)
Q Consensus 191 ~~~V~~la~dp-dg~~LaSGs~DGtIrlWdl~~g~~~~~~~~~~~~~l-------------~gH~~~V~slafs~-dG~- 254 (842)
.++|.|++|+| ++++|++|+.||+|++||+.++. ....+ .+|.++|++++|+| ++.
T Consensus 43 ~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 114 (408)
T 4a11_B 43 GGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSS--------RQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGM 114 (408)
T ss_dssp SSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCS--------SSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTTC
T ss_pred CCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCc--------ccceEeccccccccccccccCCCcEEEEEEccCCCcE
Confidence 78999999999 99999999999999999999862 22111 36999999999999 554
Q ss_pred EEEeeCCCcEEEEeCCCccceeecCCCceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcC---CCCEEEEeC-
Q 003171 255 LWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDH---SRAKVWSAG- 330 (842)
Q Consensus 255 L~SgS~DgtIrvWd~~t~~~~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~---~~~~v~s~s- 330 (842)
|++|+.|++|++||+.+++....+.. ...+..+...+ ++..+++++
T Consensus 115 l~s~~~d~~i~iwd~~~~~~~~~~~~------------------------------~~~~~~~~~~~~~~~~~~~~~~~~ 164 (408)
T 4a11_B 115 FTSSSFDKTLKVWDTNTLQTADVFNF------------------------------EETVYSHHMSPVSTKHCLVAVGTR 164 (408)
T ss_dssp EEEEETTSEEEEEETTTTEEEEEEEC------------------------------SSCEEEEEECSSCSSCCEEEEEES
T ss_pred EEEEeCCCeEEEeeCCCCccceeccC------------------------------CCceeeeEeecCCCCCcEEEEEcC
Confidence 88999999999999977543221110 12334444443 333566655
Q ss_pred CCcEEEEEccCCcEEEEeecCCceEeeeecccCCCcccccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEe
Q 003171 331 FLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVA 410 (842)
Q Consensus 331 ~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~ 410 (842)
++.|++||+.+++++..+..|...+..+.+++.... ..+++..++..+++
T Consensus 165 ~~~v~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~------------------------------ll~~~~~dg~i~i~ 214 (408)
T 4a11_B 165 GPKVQLCDLKSGSCSHILQGHRQEILAVSWSPRYDY------------------------------ILATASADSRVKLW 214 (408)
T ss_dssp SSSEEEEESSSSCCCEEECCCCSCEEEEEECSSCTT------------------------------EEEEEETTSCEEEE
T ss_pred CCeEEEEeCCCcceeeeecCCCCcEEEEEECCCCCc------------------------------EEEEEcCCCcEEEE
Confidence 578999999999988888766554444444332221 12334444433333
Q ss_pred ec----------------------CccccCCCceEEEEECCCCc-EEEEeCCCeEEEEcC-CCCeeeeeecCCc-----c
Q 003171 411 AK----------------------GGFGDDNRRTEALTTSIDGM-IWTGGANGLLLQWDP-NGNRLQDFQYLPF-----A 461 (842)
Q Consensus 411 ~~----------------------g~~~~~~~~v~al~~s~dg~-l~Sgs~DgtIrlWD~-~g~~l~~l~~H~~-----~ 461 (842)
.. ..+..|...|.+++++|++. |++|+.||.|++||+ +++.+..+.++.. .
T Consensus 215 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~ 294 (408)
T 4a11_B 215 DVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKG 294 (408)
T ss_dssp ETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCBCCCCCCCCCCCCSSC
T ss_pred ECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCCEEEEecCCCeEEEEECCCCccceecccccccccccc
Confidence 20 11235677899999999997 899999999999999 6766555543221 1
Q ss_pred E-EEEEe-cCCEEEEEecCcEEEEEeCC-CcccccccccccCEEEEEe--CCCEEEEEcCCCCeeeccccCCCCCcc
Q 003171 462 V-QCLCT-FGSQIWVGYMNGIVQVLDLE-GNLLGGWVAHSSPVIKMAV--GAGYIFTLANHGGIRGWNVTSPGPLDS 533 (842)
Q Consensus 462 V-~sls~-dG~~LasGs~DgtIrlWD~~-g~~i~~l~gH~~~V~sla~--dg~~l~S~S~DgtIrvWd~~~~~~~d~ 533 (842)
+ ..+.. .+..+++++.|+.|++||+. ++++..+.+|.+.|.++++ ++++|++++.||.|++|++.+..++..
T Consensus 295 ~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~ 371 (408)
T 4a11_B 295 LKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLKGHYKTVDCCVFQSNFQELYSGSRDCNILAWVPSLYEPVPD 371 (408)
T ss_dssp CCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEEECC------
T ss_pred ceeEEecCCCceEEEEecCCEEEEEECcCCcceeeeccCCCeEEEEEEcCCCCEEEEECCCCeEEEEeCCCCCccCC
Confidence 1 12222 35577777889999999987 7889999999999999884 788999999999999999988765543
|
| >3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R* | Back alignment and structure |
|---|
Probab=99.95 E-value=1.6e-25 Score=243.81 Aligned_cols=269 Identities=13% Similarity=0.141 Sum_probs=188.3
Q ss_pred eeEEEEecC---CEEEE-ecCCCEEEEeCCCCccccccccccccCCCCCCCCCCe-eeeeecCCCeEEEEEcCCCCEEEE
Q 003171 134 FLRTIVCTE---EQLWA-GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPF-KESVKGVSSVMCMVGDEASGVVWS 208 (842)
Q Consensus 134 ~~~~l~~~~---~~l~~-~~D~~vrvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~~~V~~la~dpdg~~LaS 208 (842)
.+.+|+... +.|.+ +.|++|++||+....... ..+. ....| ..+|.+++|+|++++|+|
T Consensus 19 ~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~---------------~~~~~~~~~h-~~~v~~~~~s~dg~~l~s 82 (319)
T 3frx_A 19 WVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKF---------------GVPVRSFKGH-SHIVQDCTLTADGAYALS 82 (319)
T ss_dssp CEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEE---------------EEEEEEEECC-SSCEEEEEECTTSSEEEE
T ss_pred eEEEEEccCCCccEEEEecCCccEEEecCCCCCccc---------------cccceEEeCC-cccEEEEEECCCCCEEEE
Confidence 466666642 34554 569999999985321100 0011 11223 789999999999999999
Q ss_pred EeCCCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCCC-EEEeeCCCcEEEEeCCCccceeecCCCceeeeE
Q 003171 209 GHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEKALSLKPEERHTAA 287 (842)
Q Consensus 209 Gs~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~~t~~~~l~~~~~~~~~~~ 287 (842)
|+.|++||+||+.++ +....+.+|.+.|.+++|+|++. |+|||.|++||+||+... ....+.
T Consensus 83 ~s~D~~v~~wd~~~~--------~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~~~-~~~~~~-------- 145 (319)
T 3frx_A 83 ASWDKTLRLWDVATG--------ETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQ-CLATLL-------- 145 (319)
T ss_dssp EETTSEEEEEETTTT--------EEEEEEECCSSCEEEEEECTTSCEEEEEETTSCEEEEETTSC-EEEEEC--------
T ss_pred EeCCCEEEEEECCCC--------CeeEEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCC-eEEEEe--------
Confidence 999999999999997 67788999999999999999998 789999999999998542 111111
Q ss_pred EEEeeceeecccceeccceeeeecCCEEEEEEcC------CCCEEEEeC-CCcEEEEEccCCcEEEEeecCCceEeeeec
Q 003171 288 LIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDH------SRAKVWSAG-FLSFALWDARTRELLKVFNIDGQIENRVDM 360 (842)
Q Consensus 288 l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~------~~~~v~s~s-~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~ 360 (842)
+| ...+..+.+.+ ++..+++++ +++|++||+.++++...+.+|...+..+
T Consensus 146 -----------~h----------~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~-- 202 (319)
T 3frx_A 146 -----------GH----------NDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTL-- 202 (319)
T ss_dssp -----------CC----------SSCEEEEEECCC------CCEEEEEETTSCEEEEETTTTEEEEEECCCCSCEEEE--
T ss_pred -----------cc----------CCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcchhheeecCCCCcEEEE--
Confidence 11 22344444433 234566665 6899999999999888877665543333
Q ss_pred ccCCCcccccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEeec--Ccc---ccCCCceEEEEECCCCcEEE
Q 003171 361 SLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAK--GGF---GDDNRRTEALTTSIDGMIWT 435 (842)
Q Consensus 361 s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~--g~~---~~~~~~v~al~~s~dg~l~S 435 (842)
.|.+++...+++..++..++|.. +.. ......|.+++|+|++.+++
T Consensus 203 -----------------------------~~sp~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~la 253 (319)
T 3frx_A 203 -----------------------------TASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEVFSLAFSPNRYWLA 253 (319)
T ss_dssp -----------------------------EECTTSSEEEEEETTCEEEEEETTTTEEEEEEECCSCEEEEEECSSSSEEE
T ss_pred -----------------------------EEcCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCcEEEEEEcCCCCEEE
Confidence 34444445566666666666641 111 12346789999999999554
Q ss_pred EeCCCeEEEEcCC-CCeeeeee--------cCCccEEEEE--ecCCEEEEEecCcEEEEEeCC
Q 003171 436 GGANGLLLQWDPN-GNRLQDFQ--------YLPFAVQCLC--TFGSQIWVGYMNGIVQVLDLE 487 (842)
Q Consensus 436 gs~DgtIrlWD~~-g~~l~~l~--------~H~~~V~sls--~dG~~LasGs~DgtIrlWD~~ 487 (842)
++.++.+++|+++ +..+..+. .|...|.+++ +||++|++|+.|++|+|||+.
T Consensus 254 ~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~sg~~Dg~i~vWd~~ 316 (319)
T 3frx_A 254 AATATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQVM 316 (319)
T ss_dssp EEETTEEEEEEETTEEEEEEECCCCTTCCGGGCCCEEEEEECTTSSEEEEEETTSCEEEEEEE
T ss_pred EEcCCCcEEEEeCcCeeeeccCccccccccCcCcceeEEEECCCCCEEEEeecCceEEEEEEe
Confidence 4456669999994 55555543 3566788775 589999999999999999974
|
| >3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* | Back alignment and structure |
|---|
Probab=99.95 E-value=7.9e-26 Score=257.67 Aligned_cols=253 Identities=17% Similarity=0.240 Sum_probs=189.3
Q ss_pred CCC-eEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCCCEEEeeCCCcEEEEeC
Q 003171 191 VSS-VMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGDLWSGSEGGGIKIWPW 269 (842)
Q Consensus 191 ~~~-V~~la~dpdg~~LaSGs~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~L~SgS~DgtIrvWd~ 269 (842)
..+ +.|+.++ +++|+||+.||+|++||+.++ +.+..+.+|.++|++++|+|++.|+||+.||+|++||+
T Consensus 121 ~~~v~~~~~~~--~~~l~sgs~dg~i~vwd~~~~--------~~~~~~~~h~~~V~~l~~~~~~~l~s~s~dg~i~vwd~ 190 (464)
T 3v7d_B 121 MTSVITCLQFE--DNYVITGADDKMIRVYDSINK--------KFLLQLSGHDGGVWALKYAHGGILVSGSTDRTVRVWDI 190 (464)
T ss_dssp SSSCEEEEEEE--TTEEEEEETTSCEEEEETTTT--------EEEEEECCCSSCEEEEEECSTTEEEEEETTSCEEEEET
T ss_pred CCCcEEEEEEC--CCEEEEEcCCCcEEEEECCCC--------cEEEEEeCCCcCEEEEEEcCCCEEEEEeCCCCEEEEEC
Confidence 444 5787775 589999999999999999987 67888999999999999999998899999999999999
Q ss_pred CCccceeecCCCceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEc--CCCCEEEEeC-CCcEEEEEccCCcEEE
Q 003171 270 EAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSD--HSRAKVWSAG-FLSFALWDARTRELLK 346 (842)
Q Consensus 270 ~t~~~~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~--~~~~~v~s~s-~~tI~lWD~~tg~~l~ 346 (842)
.+++....+. +| ...+.++.+. +++..+++++ +++|++||+.++....
T Consensus 191 ~~~~~~~~~~-------------------~h----------~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~ 241 (464)
T 3v7d_B 191 KKGCCTHVFE-------------------GH----------NSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVP 241 (464)
T ss_dssp TTTEEEEEEC-------------------CC----------SSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC-
T ss_pred CCCcEEEEEC-------------------CC----------CCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccc
Confidence 7754322221 11 3456666655 3556666666 6899999998876433
Q ss_pred EeecCCceEeeeecccCCCcccccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEeecCccccCCCceEEEE
Q 003171 347 VFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALT 426 (842)
Q Consensus 347 ~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~al~ 426 (842)
........ .. ... .+....... ..+.+|...+.++
T Consensus 242 ~~~~~~~~------------------~~-~~~-------------~~~~~~~~~------------~~~~~~~~~v~~~- 276 (464)
T 3v7d_B 242 DHGEEHDY------------------PL-VFH-------------TPEENPYFV------------GVLRGHMASVRTV- 276 (464)
T ss_dssp -----CCS------------------SE-EES-------------CGGGCTTEE------------EEECCCSSCEEEE-
T ss_pred cccccCCc------------------ce-Eee-------------ccCCCeEEE------------EEccCccceEEEE-
Confidence 22111000 00 000 000000000 0123444555555
Q ss_pred ECCCCc-EEEEeCCCeEEEEcC-CCCeeeeeecCCccEEEEEe--cCCEEEEEecCcEEEEEeCC-CcccccccccccCE
Q 003171 427 TSIDGM-IWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQCLCT--FGSQIWVGYMNGIVQVLDLE-GNLLGGWVAHSSPV 501 (842)
Q Consensus 427 ~s~dg~-l~Sgs~DgtIrlWD~-~g~~l~~l~~H~~~V~sls~--dG~~LasGs~DgtIrlWD~~-g~~i~~l~gH~~~V 501 (842)
++++. +++|+.|++|++||+ +++++.++.+|...|.++++ +|++|++|+.||+|++||++ ++++.++.+|...|
T Consensus 277 -~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v 355 (464)
T 3v7d_B 277 -SGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTALV 355 (464)
T ss_dssp -EEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECCCSSCE
T ss_pred -cCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEeCCCCcE
Confidence 44554 899999999999999 78999999999999999865 68899999999999999986 88999999999999
Q ss_pred EEEEeCCCEEEEEcCCCCeeeccccCC
Q 003171 502 IKMAVGAGYIFTLANHGGIRGWNVTSP 528 (842)
Q Consensus 502 ~sla~dg~~l~S~S~DgtIrvWd~~~~ 528 (842)
.+++++++++++++.|++|++||+..+
T Consensus 356 ~~~~~~~~~l~s~s~dg~v~vwd~~~~ 382 (464)
T 3v7d_B 356 GLLRLSDKFLVSAAADGSIRGWDANDY 382 (464)
T ss_dssp EEEEECSSEEEEEETTSEEEEEETTTC
T ss_pred EEEEEcCCEEEEEeCCCcEEEEECCCC
Confidence 999999999999999999999998754
|
| >3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.95 E-value=8.1e-26 Score=246.62 Aligned_cols=267 Identities=14% Similarity=0.161 Sum_probs=192.8
Q ss_pred CCCeEEEEEcCC---CCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCCC-EEEeeCCCcEEE
Q 003171 191 VSSVMCMVGDEA---SGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKI 266 (842)
Q Consensus 191 ~~~V~~la~dpd---g~~LaSGs~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrv 266 (842)
.++|.|++|+|+ |++|++|+.||+|++||+.+.. ......+.+|.++|++++|+|+|+ |++|+.||+|++
T Consensus 39 ~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~------~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~i 112 (368)
T 3mmy_A 39 DDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSG------QTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKM 112 (368)
T ss_dssp SSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTS------CEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEE
T ss_pred CCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCC------ceeEEEeccccCCEEEEEECcCCCEEEEEcCCCcEEE
Confidence 789999999999 6999999999999999998721 023367899999999999999998 789999999999
Q ss_pred EeCCCccceeecCCCceeeeEEEEeeceeecccceeccceeeeecCCEEEEEE--cCCCCEEEEeC-CCcEEEEEccCCc
Q 003171 267 WPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLS--DHSRAKVWSAG-FLSFALWDARTRE 343 (842)
Q Consensus 267 Wd~~t~~~~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las--~~~~~~v~s~s-~~tI~lWD~~tg~ 343 (842)
||+.+.+... .. + +...+.++.. .+++..+++++ +++|++||+.+++
T Consensus 113 wd~~~~~~~~-~~-------------------~----------~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~ 162 (368)
T 3mmy_A 113 WDLSSNQAIQ-IA-------------------Q----------HDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSN 162 (368)
T ss_dssp EETTTTEEEE-EE-------------------E----------CSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSS
T ss_pred EEcCCCCcee-ec-------------------c----------ccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCc
Confidence 9997643211 00 0 1345777777 66777777766 6899999999999
Q ss_pred EEEEeecCCceEeeeecccCCCcccccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEee-cC-------cc
Q 003171 344 LLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAA-KG-------GF 415 (842)
Q Consensus 344 ~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~-~g-------~~ 415 (842)
++..+..+.... ...... ...+++..++...++. .. ..
T Consensus 163 ~~~~~~~~~~~~-~~~~~~---------------------------------~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 208 (368)
T 3mmy_A 163 PMMVLQLPERCY-CADVIY---------------------------------PMAVVATAERGLIVYQLENQPSEFRRIE 208 (368)
T ss_dssp CSEEEECSSCEE-EEEEET---------------------------------TEEEEEEGGGCEEEEECSSSCEEEEECC
T ss_pred EEEEEecCCCce-EEEecC---------------------------------CeeEEEeCCCcEEEEEeccccchhhhcc
Confidence 888877654321 111111 0111122222111111 00 00
Q ss_pred ccCCCceEEEEECCCC-----cEEEEeCCCeEEEEcC-CC---CeeeeeecCCc------------cEEEEEe--cCCEE
Q 003171 416 GDDNRRTEALTTSIDG-----MIWTGGANGLLLQWDP-NG---NRLQDFQYLPF------------AVQCLCT--FGSQI 472 (842)
Q Consensus 416 ~~~~~~v~al~~s~dg-----~l~Sgs~DgtIrlWD~-~g---~~l~~l~~H~~------------~V~sls~--dG~~L 472 (842)
......+..+.+.+++ .+++|+.||.|++||+ .+ +.+..+.+|.. +|+++++ +|++|
T Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l 288 (368)
T 3mmy_A 209 SPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTL 288 (368)
T ss_dssp CSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHHHHSEEEECSEEC----CCCEEECCEEEEEECTTTCCE
T ss_pred ccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCccccceeeeeeecccccccccccccceEEEEEecCCCEE
Confidence 0112223333333222 1899999999999999 44 56778888876 7998865 78899
Q ss_pred EEEecCcEEEEEeCC-CcccccccccccCEEEEEe--CCCEEEEEcCCCCeeeccccC
Q 003171 473 WVGYMNGIVQVLDLE-GNLLGGWVAHSSPVIKMAV--GAGYIFTLANHGGIRGWNVTS 527 (842)
Q Consensus 473 asGs~DgtIrlWD~~-g~~i~~l~gH~~~V~sla~--dg~~l~S~S~DgtIrvWd~~~ 527 (842)
++|+.||.|+|||+. ++++..+.+|...|.++++ ++++|+++|.|+..+.|++..
T Consensus 289 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~s~d~~~~~~~~~~ 346 (368)
T 3mmy_A 289 ATVGSDGRFSFWDKDARTKLKTSEQLDQPISACCFNHNGNIFAYASSYDWSKGHEFYN 346 (368)
T ss_dssp EEEETTSCEEEEETTTTEEEEECCCCSSCEEEEEECTTSSCEEEEECCCSTTCGGGCC
T ss_pred EEEccCCeEEEEECCCCcEEEEecCCCCCceEEEECCCCCeEEEEecccccccccccC
Confidence 999999999999997 7889999999999999985 788999999999888877544
|
| >3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.95 E-value=4.6e-26 Score=249.96 Aligned_cols=239 Identities=12% Similarity=0.046 Sum_probs=182.1
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecC--CC-EEEeeCCCcEEEE
Q 003171 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSY--GD-LWSGSEGGGIKIW 267 (842)
Q Consensus 191 ~~~V~~la~dpdg~~LaSGs~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~d--G~-L~SgS~DgtIrvW 267 (842)
..+|.|++|+|++++|++|+.||+|++|++..+. .+....+.+|.++|++|+|+++ ++ |++|+.||+|++|
T Consensus 11 ~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~------~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~iw 84 (379)
T 3jrp_A 11 NELIHDAVLDYYGKRLATCSSDKTIKIFEVEGET------HKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIW 84 (379)
T ss_dssp CCCEEEEEECSSSSEEEEEETTSCEEEEEEETTE------EEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSCEEEE
T ss_pred cccEEEEEEcCCCCEEEEEECCCcEEEEecCCCc------ceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCEEEEE
Confidence 7899999999999999999999999999997431 1556778999999999999977 66 7899999999999
Q ss_pred eCCCccceeecCCCceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcCC--CCEEEEeC-CCcEEEEEccCCcE
Q 003171 268 PWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHS--RAKVWSAG-FLSFALWDARTREL 344 (842)
Q Consensus 268 d~~t~~~~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~--~~~v~s~s-~~tI~lWD~~tg~~ 344 (842)
|+.++..... . .+.+| ...+.++++.++ +..+++++ +++|++||+.++..
T Consensus 85 d~~~~~~~~~--------~---------~~~~~----------~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~ 137 (379)
T 3jrp_A 85 KEENGRWSQI--------A---------VHAVH----------SASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGT 137 (379)
T ss_dssp EEETTEEEEE--------E---------EECCC----------SSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSC
T ss_pred EcCCCceeEe--------e---------eecCC----------CcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCc
Confidence 9976431100 0 01111 446788888887 77777776 67999999987632
Q ss_pred EEEeecCCceEeeeecccCCCcccccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEeecCccccCCCceEE
Q 003171 345 LKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEA 424 (842)
Q Consensus 345 l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~a 424 (842)
...+. +..|...|.+
T Consensus 138 ~~~~~-----------------------------------------------------------------~~~~~~~v~~ 152 (379)
T 3jrp_A 138 TSPII-----------------------------------------------------------------IDAHAIGVNS 152 (379)
T ss_dssp CCEEE-----------------------------------------------------------------EECCTTCEEE
T ss_pred eeeEE-----------------------------------------------------------------ecCCCCceEE
Confidence 11110 0112223444
Q ss_pred EEECC-------------CCc-EEEEeCCCeEEEEcC-CCC----eeeeeecCCccEEEEEe--c---CCEEEEEecCcE
Q 003171 425 LTTSI-------------DGM-IWTGGANGLLLQWDP-NGN----RLQDFQYLPFAVQCLCT--F---GSQIWVGYMNGI 480 (842)
Q Consensus 425 l~~s~-------------dg~-l~Sgs~DgtIrlWD~-~g~----~l~~l~~H~~~V~sls~--d---G~~LasGs~Dgt 480 (842)
++++| ++. +++|+.|++|++||+ .++ ++..+.+|...|.++++ + +++|++|+.||+
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~ 232 (379)
T 3jrp_A 153 ASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRT 232 (379)
T ss_dssp EEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSC
T ss_pred EEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeEEEEeCCCE
Confidence 44554 555 899999999999999 453 55678899999999864 6 789999999999
Q ss_pred EEEEeCC-Cc-----ccccccccccCEEEEEe--CCCEEEEEcCCCCeeeccccC
Q 003171 481 VQVLDLE-GN-----LLGGWVAHSSPVIKMAV--GAGYIFTLANHGGIRGWNVTS 527 (842)
Q Consensus 481 IrlWD~~-g~-----~i~~l~gH~~~V~sla~--dg~~l~S~S~DgtIrvWd~~~ 527 (842)
|+|||+. ++ .+.....|...|+++++ +++++++++.|+.|++|++..
T Consensus 233 i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~ 287 (379)
T 3jrp_A 233 CIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENL 287 (379)
T ss_dssp EEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEESSSSEEEEEEEE
T ss_pred EEEEeCCCCCccceeeeeccccCCCcEEEEEEcCCCCEEEEecCCCcEEEEeCCC
Confidence 9999986 32 23444569999999884 788999999999999999764
|
| >3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.95 E-value=7.4e-26 Score=255.47 Aligned_cols=268 Identities=14% Similarity=0.142 Sum_probs=192.5
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCcc---CCCCCcceeEEecccC------------CcEEEEEEecCC--
Q 003171 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLL---DSDDGFGEVLSWQAHR------------GPVLSLCISSYG-- 253 (842)
Q Consensus 191 ~~~V~~la~dpdg~~LaSGs~DGtIrlWdl~~g~~---~~~~~~~~~~~l~gH~------------~~V~slafs~dG-- 253 (842)
.++|.|++|+|+|++|++|+.||+|++|++.++.. .....++....+++|. ++|++|+|+|++
T Consensus 28 ~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~~~ 107 (447)
T 3dw8_B 28 ADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQKNA 107 (447)
T ss_dssp GGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCCSS
T ss_pred cCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCCCc
Confidence 67999999999999999999999999999987520 0001122467789998 899999999997
Q ss_pred C-EEEeeCCCcEEEEeCCCccceee---cCCCce----------------eeeEEEEeec--eeecccceeccceeeeec
Q 003171 254 D-LWSGSEGGGIKIWPWEAIEKALS---LKPEER----------------HTAALIVERS--YIDLRSHLSVNGFSSILT 311 (842)
Q Consensus 254 ~-L~SgS~DgtIrvWd~~t~~~~l~---~~~~~~----------------~~~~l~~~~s--~~~l~~~~~~~~~~~~~s 311 (842)
. |++|+.|++|++|++.+...... +..+.. +......... .....+ +.
T Consensus 108 ~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------h~ 177 (447)
T 3dw8_B 108 AQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANA----------HT 177 (447)
T ss_dssp SEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSC----------CS
T ss_pred ceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccC----------CC
Confidence 4 88999999999999965332111 000000 0000000000 000011 25
Q ss_pred CCEEEEEEcCCCCEEEEeCCCcEEEEEccC-CcEEEEeecCCceEeeeecccCCCcccccceEEEEEecCCCCccceeee
Q 003171 312 SDIKNLLSDHSRAKVWSAGFLSFALWDART-RELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFG 390 (842)
Q Consensus 312 ~~v~~las~~~~~~v~s~s~~tI~lWD~~t-g~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~ 390 (842)
..+.++++++++..++++.+++|++||+.+ ++++..+....
T Consensus 178 ~~v~~~~~~~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~-------------------------------------- 219 (447)
T 3dw8_B 178 YHINSISINSDYETYLSADDLRINLWHLEITDRSFNIVDIKP-------------------------------------- 219 (447)
T ss_dssp SCCCEEEECTTSSEEEEECSSEEEEEETTEEEEEEEEEECCC--------------------------------------
T ss_pred cceEEEEEcCCCCEEEEeCCCeEEEEECCCCCceeeeeeccc--------------------------------------
Confidence 678889999999999998788999999984 33333221100
Q ss_pred EeecCcceEEecCCcEEEEeecCccccCCCceEEEEECCCC-c-EEEEeCCCeEEEEcC-CCCe----eeeeecCCc---
Q 003171 391 FFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDG-M-IWTGGANGLLLQWDP-NGNR----LQDFQYLPF--- 460 (842)
Q Consensus 391 ~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~al~~s~dg-~-l~Sgs~DgtIrlWD~-~g~~----l~~l~~H~~--- 460 (842)
..+..|...|.+++++|++ . +++|+.||+|++||+ ++++ ++.+.+|..
T Consensus 220 ----------------------~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 277 (447)
T 3dw8_B 220 ----------------------ANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCDRHSKLFEEPEDPSN 277 (447)
T ss_dssp ----------------------SSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSSSCTTCEEECCC-----
T ss_pred ----------------------ccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCccccceeeEeccCCCccc
Confidence 0134566778899999997 4 899999999999999 6765 788888886
Q ss_pred ---------cEEEEEe--cCCEEEEEecCcEEEEEeCC--CcccccccccccCE-----------------EEEEeCCCE
Q 003171 461 ---------AVQCLCT--FGSQIWVGYMNGIVQVLDLE--GNLLGGWVAHSSPV-----------------IKMAVGAGY 510 (842)
Q Consensus 461 ---------~V~sls~--dG~~LasGs~DgtIrlWD~~--g~~i~~l~gH~~~V-----------------~sla~dg~~ 510 (842)
.|.++++ +|++|++|+. ++|+|||+. ++++.++.+|...+ .++.+++++
T Consensus 278 ~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~ 356 (447)
T 3dw8_B 278 RSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPVETYQVHEYLRSKLCSLYENDCIFDKFECCWNGSDSV 356 (447)
T ss_dssp CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSSCSCCEESCGGGTTTHHHHHHTSGGGCCCCEEECTTSSE
T ss_pred cccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCccccceeeccccccccccccccccccccceEEEECCCCCE
Confidence 8999865 7899999998 999999985 67899999997533 233468899
Q ss_pred EEEEcCCCCeeeccccCCC
Q 003171 511 IFTLANHGGIRGWNVTSPG 529 (842)
Q Consensus 511 l~S~S~DgtIrvWd~~~~~ 529 (842)
|++++.|+.|++||+.+..
T Consensus 357 l~s~s~dg~v~iwd~~~~~ 375 (447)
T 3dw8_B 357 VMTGSYNNFFRMFDRNTKR 375 (447)
T ss_dssp EEEECSTTEEEEEETTTCC
T ss_pred EEEeccCCEEEEEEcCCCc
Confidence 9999999999999987643
|
| >1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 | Back alignment and structure |
|---|
Probab=99.95 E-value=1.9e-25 Score=253.46 Aligned_cols=229 Identities=18% Similarity=0.261 Sum_probs=185.6
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCCC-EEEeeCCCcEEEEeC
Q 003171 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPW 269 (842)
Q Consensus 191 ~~~V~~la~dpdg~~LaSGs~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~ 269 (842)
..+|.|+.+ ++++|++|+.||+|++||+.++ +....+.+|.++|++++| +++ |++|+.||+|++||+
T Consensus 133 ~~~v~~~~~--d~~~l~~g~~dg~i~iwd~~~~--------~~~~~~~~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~ 200 (435)
T 1p22_A 133 SKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTL--------ECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDV 200 (435)
T ss_dssp CCCEEEEEC--CSSEEEEEESSSCEEEEESSSC--------CEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEES
T ss_pred CCcEEEEEE--CCCEEEEEeCCCeEEEEeCCCC--------eEEEEEcCCCCcEEEEEE--CCCEEEEEcCCCeEEEEEC
Confidence 567999887 6899999999999999999987 678889999999999999 555 789999999999999
Q ss_pred CCccceeecCCCceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcCCCCEEEEeC-CCcEEEEEccCCcEEEEe
Q 003171 270 EAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVF 348 (842)
Q Consensus 270 ~t~~~~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s-~~tI~lWD~~tg~~l~~l 348 (842)
.+++....+.. | ...+.++.++ +..+++++ +++|++||+.+++.+...
T Consensus 201 ~~~~~~~~~~~-------------------h----------~~~v~~l~~~--~~~l~s~s~dg~i~vwd~~~~~~~~~~ 249 (435)
T 1p22_A 201 NTGEMLNTLIH-------------------H----------CEAVLHLRFN--NGMMVTCSKDRSIAVWDMASPTDITLR 249 (435)
T ss_dssp SSCCEEEEECC-------------------C----------CSCEEEEECC--TTEEEEEETTSCEEEEECSSSSCCEEE
T ss_pred CCCcEEEEEcC-------------------C----------CCcEEEEEEc--CCEEEEeeCCCcEEEEeCCCCCCceee
Confidence 77543222211 1 3345666664 34666665 689999999876542110
Q ss_pred ecCCceEeeeecccCCCcccccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEeecCccccCCCceEEEEEC
Q 003171 349 NIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTS 428 (842)
Q Consensus 349 ~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~al~~s 428 (842)
. .+.+|...|.++.+
T Consensus 250 ~----------------------------------------------------------------~~~~~~~~v~~~~~- 264 (435)
T 1p22_A 250 R----------------------------------------------------------------VLVGHRAAVNVVDF- 264 (435)
T ss_dssp E----------------------------------------------------------------EECCCSSCEEEEEE-
T ss_pred e----------------------------------------------------------------EecCCCCcEEEEEe-
Confidence 0 01123344555666
Q ss_pred CCCcEEEEeCCCeEEEEcC-CCCeeeeeecCCccEEEEEecCCEEEEEecCcEEEEEeCC-CcccccccccccCEEEEEe
Q 003171 429 IDGMIWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQCLCTFGSQIWVGYMNGIVQVLDLE-GNLLGGWVAHSSPVIKMAV 506 (842)
Q Consensus 429 ~dg~l~Sgs~DgtIrlWD~-~g~~l~~l~~H~~~V~sls~dG~~LasGs~DgtIrlWD~~-g~~i~~l~gH~~~V~sla~ 506 (842)
.+..+++|+.||+|++||+ +++++.++.+|...|.++.+++.+|++|+.||+|++||++ ++++.++.+|.+.|.++++
T Consensus 265 ~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~ 344 (435)
T 1p22_A 265 DDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRF 344 (435)
T ss_dssp ETTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEETTEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEC
T ss_pred CCCEEEEEeCCCeEEEEECCcCcEEEEEcCCCCcEEEEEeCCCEEEEEeCCCeEEEEECCCCCEEEEEeCCcCcEEEEEe
Confidence 3345899999999999999 7899999999999999999999999999999999999997 8899999999999999999
Q ss_pred CCCEEEEEcCCCCeeeccccC
Q 003171 507 GAGYIFTLANHGGIRGWNVTS 527 (842)
Q Consensus 507 dg~~l~S~S~DgtIrvWd~~~ 527 (842)
+++++++++.||+|++||+..
T Consensus 345 ~~~~l~sg~~dg~i~vwd~~~ 365 (435)
T 1p22_A 345 DNKRIVSGAYDGKIKVWDLVA 365 (435)
T ss_dssp CSSEEEEEETTSCEEEEEHHH
T ss_pred cCCEEEEEeCCCcEEEEECCC
Confidence 999999999999999999754
|
| >3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.94 E-value=1e-25 Score=271.51 Aligned_cols=241 Identities=20% Similarity=0.223 Sum_probs=187.2
Q ss_pred CCCeEEEEEcCCC-CEEEEEeCCCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCCC-EEEeeCCCcEEEEe
Q 003171 191 VSSVMCMVGDEAS-GVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWP 268 (842)
Q Consensus 191 ~~~V~~la~dpdg-~~LaSGs~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd 268 (842)
..+|.|++++|++ ++|+||+.||+||+|++.... .........+.+|...|++++|+|+|+ |+|||.|++|||||
T Consensus 382 ~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~---~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg~v~vwd 458 (694)
T 3dm0_A 382 TDMVTAIATPIDNADIIVSASRDKSIILWKLTKDD---KAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGELRLWD 458 (694)
T ss_dssp SSCEEEEECCTTCCSEEEEEETTSEEEEEECCCST---TCSCEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred CceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCC---cccccccceecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEE
Confidence 8899999999865 799999999999999997641 011133567899999999999999998 78999999999999
Q ss_pred CCCccceeecCCCceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcCCCCEEEEeC-CCcEEEEEccCCcEEEE
Q 003171 269 WEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKV 347 (842)
Q Consensus 269 ~~t~~~~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s-~~tI~lWD~~tg~~l~~ 347 (842)
+.++.....+ .+| ...|.++++++++..+++++ |++|++||....... .
T Consensus 459 ~~~~~~~~~~-------------------~~h----------~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~~-~ 508 (694)
T 3dm0_A 459 LAAGVSTRRF-------------------VGH----------TKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKY-T 508 (694)
T ss_dssp TTTTEEEEEE-------------------ECC----------SSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEE-E
T ss_pred CCCCcceeEE-------------------eCC----------CCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCcce-e
Confidence 9765322211 122 45688899998888888876 689999997543221 1
Q ss_pred eecCCceEeeeecccCCCcccccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEeecCccccCCCceEEEEE
Q 003171 348 FNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTT 427 (842)
Q Consensus 348 l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~al~~ 427 (842)
+. . ...+|...|.++++
T Consensus 509 ~~-----------------------------~----------------------------------~~~~h~~~v~~~~~ 525 (694)
T 3dm0_A 509 IS-----------------------------E----------------------------------GGEGHRDWVSCVRF 525 (694)
T ss_dssp EC-----------------------------S----------------------------------STTSCSSCEEEEEE
T ss_pred ec-----------------------------c----------------------------------CCCCCCCcEEEEEE
Confidence 10 0 01234556778889
Q ss_pred CCCC---cEEEEeCCCeEEEEcC-CCCeeeeeecCCccEEEEEe--cCCEEEEEecCcEEEEEeCC-CcccccccccccC
Q 003171 428 SIDG---MIWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQCLCT--FGSQIWVGYMNGIVQVLDLE-GNLLGGWVAHSSP 500 (842)
Q Consensus 428 s~dg---~l~Sgs~DgtIrlWD~-~g~~l~~l~~H~~~V~sls~--dG~~LasGs~DgtIrlWD~~-g~~i~~l~gH~~~ 500 (842)
+|++ .+++|+.|++|++||+ +++++.++.+|...|+++++ +|++|++|+.||+|+|||+. ++++..+..| ..
T Consensus 526 ~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~~~~~~~~~-~~ 604 (694)
T 3dm0_A 526 SPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLEAN-SV 604 (694)
T ss_dssp CSCSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSBCEEEETTTTEEEECCBCS-SC
T ss_pred eCCCCcceEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEecCC-Cc
Confidence 9886 4899999999999999 68899999999999999865 78999999999999999987 7777777654 57
Q ss_pred EEEEEe--CCCEEEEEcCCCCeeeccccCCC
Q 003171 501 VIKMAV--GAGYIFTLANHGGIRGWNVTSPG 529 (842)
Q Consensus 501 V~sla~--dg~~l~S~S~DgtIrvWd~~~~~ 529 (842)
|.++++ ++..+ +++.|++|++||+.+..
T Consensus 605 v~~~~~sp~~~~l-~~~~~~~i~iwd~~~~~ 634 (694)
T 3dm0_A 605 IHALCFSPNRYWL-CAATEHGIKIWDLESKS 634 (694)
T ss_dssp EEEEEECSSSSEE-EEEETTEEEEEETTTTE
T ss_pred EEEEEEcCCCcEE-EEEcCCCEEEEECCCCC
Confidence 888885 44444 45567789999987643
|
| >3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A | Back alignment and structure |
|---|
Probab=99.94 E-value=3.4e-26 Score=256.34 Aligned_cols=290 Identities=12% Similarity=0.126 Sum_probs=202.5
Q ss_pred CeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCCC-EEEeeCCCcEEEEeCCC
Q 003171 193 SVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEA 271 (842)
Q Consensus 193 ~V~~la~dpdg~~LaSGs~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~~t 271 (842)
.+.+++|+|++++|++|+.||+|++||+.++ +....+.+| ..+...+|+++|+ |++|+.|++|++||+.+
T Consensus 58 ~~~~~~~s~~g~~l~~~~~d~~v~i~d~~~~--------~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 128 (420)
T 3vl1_A 58 AGKGNTFEKVGSHLYKARLDGHDFLFNTIIR--------DGSKMLKRA-DYTAVDTAKLQMRRFILGTTEGDIKVLDSNF 128 (420)
T ss_dssp CCTTCEEEEEETTEEEEEETTEEEEEECCSE--------ETTTTSCSC-CEEEEEEECSSSCEEEEEETTSCEEEECTTS
T ss_pred cccceeeeecCCeEEEEEcCCcEEEEEeccc--------ceeeEEecC-CceEEEEEecCCCEEEEEECCCCEEEEeCCC
Confidence 4557899999999999999999999999886 334445566 4556668899997 78999999999999876
Q ss_pred ccceeecCCCceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcCCCCEEEEeC-CCcEEEEEccCCcEEEEeec
Q 003171 272 IEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVFNI 350 (842)
Q Consensus 272 ~~~~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s-~~tI~lWD~~tg~~l~~l~~ 350 (842)
......+ .+| ...+.++++++++..+++++ +++|++||+.+++++..+.+
T Consensus 129 ~~~~~~~-------------------~~h----------~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~ 179 (420)
T 3vl1_A 129 NLQREID-------------------QAH----------VSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIG 179 (420)
T ss_dssp CEEEEET-------------------TSS----------SSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCCCEEEEC
T ss_pred cceeeec-------------------ccc----------cCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCceEEcC
Confidence 4322111 112 45688899998888888877 57899999999999888887
Q ss_pred CCceEeeeecccCCCccc--ccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEee-----cCccccCCCceE
Q 003171 351 DGQIENRVDMSLLPDFAM--EDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAA-----KGGFGDDNRRTE 423 (842)
Q Consensus 351 ~~~~~~~~~~s~~~~~~~--~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~-----~g~~~~~~~~v~ 423 (842)
|...+..+.+++.....+ ..+..+++|.... .+.. ..... ..++...+..+.. ......+...+.
T Consensus 180 h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~-~~~~---~~~~~----~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~ 251 (420)
T 3vl1_A 180 HRATVTDIAIIDRGRNVLSASLDGTIRLWECGT-GTTI---HTFNR----KENPHDGVNSIALFVGTDRQLHEISTSKKN 251 (420)
T ss_dssp CSSCEEEEEEETTTTEEEEEETTSCEEEEETTT-TEEE---EEECB----TTBTTCCEEEEEEEECCCSSCGGGCCCCCC
T ss_pred CCCcEEEEEEcCCCCEEEEEcCCCcEEEeECCC-Ccee---EEeec----CCCCCCCccEEEEecCCcceeeecccCccc
Confidence 776656666655432211 1111122222110 0000 00000 0011122222211 001112345566
Q ss_pred EEEECCCCc-EEEEeCCCeEEEEcC-CCCeeeeee-cCCccEEEEEe--cCC-EEEEEecCcEEEEEeCC-Cc-cccccc
Q 003171 424 ALTTSIDGM-IWTGGANGLLLQWDP-NGNRLQDFQ-YLPFAVQCLCT--FGS-QIWVGYMNGIVQVLDLE-GN-LLGGWV 495 (842)
Q Consensus 424 al~~s~dg~-l~Sgs~DgtIrlWD~-~g~~l~~l~-~H~~~V~sls~--dG~-~LasGs~DgtIrlWD~~-g~-~i~~l~ 495 (842)
+++++|+|. +++|+.||+|++||+ +++.+..+. .|...|.++++ +|+ +|++|+.||+|++||++ ++ ++..+.
T Consensus 252 ~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~ 331 (420)
T 3vl1_A 252 NLEFGTYGKYVIAGHVSGVITVHNVFSKEQTIQLPSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFL 331 (420)
T ss_dssp TTCSSCTTEEEEEEETTSCEEEEETTTCCEEEEECCTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEE
T ss_pred ceEEcCCCCEEEEEcCCCeEEEEECCCCceeEEcccccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhhh
Confidence 677899997 789999999999999 677666654 58899999875 577 99999999999999997 43 477887
Q ss_pred c-cccCEEEEE-eCCCEEEEEcCCCCeeeccccCC
Q 003171 496 A-HSSPVIKMA-VGAGYIFTLANHGGIRGWNVTSP 528 (842)
Q Consensus 496 g-H~~~V~sla-~dg~~l~S~S~DgtIrvWd~~~~ 528 (842)
+ |...|.++. .+++++++++.|++|++|++..+
T Consensus 332 ~~~~~~v~~~~~~~~~~l~s~~~d~~v~iw~~~~~ 366 (420)
T 3vl1_A 332 INEGTPINNVYFAAGALFVSSGFDTSIKLDIISDP 366 (420)
T ss_dssp ESTTSCEEEEEEETTEEEEEETTTEEEEEEEECCT
T ss_pred ccCCCCceEEEeCCCCEEEEecCCccEEEEeccCC
Confidence 7 677888887 47889999999999999998763
|
| >2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.94 E-value=2.3e-26 Score=256.77 Aligned_cols=277 Identities=13% Similarity=0.089 Sum_probs=205.1
Q ss_pred CCeEEEEEcCCCC-EEEEE----------eCCCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCCC-EEEee
Q 003171 192 SSVMCMVGDEASG-VVWSG----------HRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGS 259 (842)
Q Consensus 192 ~~V~~la~dpdg~-~LaSG----------s~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS 259 (842)
..|.|++|+|+++ +|++| +.||+|++|++.++.. .......+|...|++++|+|+|+ |++|+
T Consensus 13 ~~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~------~~~~~~~~~~~~v~~~~~s~~~~~l~~~~ 86 (416)
T 2pm9_A 13 SRTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADS------EKPIASLQVDSKFNDLDWSHNNKIIAGAL 86 (416)
T ss_dssp EESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGG------CSCSCCCCCSSCEEEEEECSSSSCEEEEE
T ss_pred hhcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCC------CcEEEEEecCCceEEEEECCCCCeEEEEc
Confidence 3688999999987 99999 8999999999988620 01222346899999999999997 88999
Q ss_pred CCCcEEEEeCCCccceeecCCCceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcCC-CCEEEEeC-CCcEEEE
Q 003171 260 EGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHS-RAKVWSAG-FLSFALW 337 (842)
Q Consensus 260 ~DgtIrvWd~~t~~~~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~-~~~v~s~s-~~tI~lW 337 (842)
.|++|++|++.+..... .... .+.+| ...+.+++++++ +..+++++ +++|++|
T Consensus 87 ~dg~v~vw~~~~~~~~~------~~~~---------~~~~h----------~~~v~~~~~~~~~~~~l~s~~~dg~v~iw 141 (416)
T 2pm9_A 87 DNGSLELYSTNEANNAI------NSMA---------RFSNH----------SSSVKTVKFNAKQDNVLASGGNNGEIFIW 141 (416)
T ss_dssp SSSCEEEECCSSTTSCC------CEEE---------ECCCS----------SSCCCEEEECSSSTTBEEEECSSSCEEBC
T ss_pred cCCeEEEeecccccccc------cchh---------hccCC----------ccceEEEEEcCCCCCEEEEEcCCCeEEEE
Confidence 99999999997621000 0000 01112 446777888876 67787776 6799999
Q ss_pred EccCCc------EEEEe---ecCCceEeeeecccCCCcccccceEEEEEecCCCCccceeeeEeec-CcceEEecCCcEE
Q 003171 338 DARTRE------LLKVF---NIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQR-SRNAIMGAADAVR 407 (842)
Q Consensus 338 D~~tg~------~l~~l---~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~-~~~~~~g~~~~v~ 407 (842)
|+.+++ ....+ ..+ ......+.|.++ +...+++..++..
T Consensus 142 d~~~~~~~~~~~~~~~~~~~~~~-------------------------------~~~v~~~~~~~~~~~~l~~~~~dg~v 190 (416)
T 2pm9_A 142 DMNKCTESPSNYTPLTPGQSMSS-------------------------------VDEVISLAWNQSLAHVFASAGSSNFA 190 (416)
T ss_dssp BTTTTSSCTTTCCCBCCCCSCCS-------------------------------SCCCCEEEECSSCTTEEEEESSSSCE
T ss_pred ECCCCccccccccccccccccCC-------------------------------CCCeeEEEeCCCCCcEEEEEcCCCCE
Confidence 999876 21111 111 111223455554 3445666666655
Q ss_pred EEee--cC----ccccC------CCceEEEEECCCC--cEEEEeCCC---eEEEEcC-CC-Ceeeeee-cCCccEEEEEe
Q 003171 408 RVAA--KG----GFGDD------NRRTEALTTSIDG--MIWTGGANG---LLLQWDP-NG-NRLQDFQ-YLPFAVQCLCT 467 (842)
Q Consensus 408 ~v~~--~g----~~~~~------~~~v~al~~s~dg--~l~Sgs~Dg---tIrlWD~-~g-~~l~~l~-~H~~~V~sls~ 467 (842)
+++. .+ .+..+ ...+.+++++|++ .+++++.|+ +|++||+ ++ +++..+. +|...|+++++
T Consensus 191 ~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~ 270 (416)
T 2pm9_A 191 SIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDW 270 (416)
T ss_dssp EEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTSCSBCCCSCCSSCEEEEEE
T ss_pred EEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCCCcEEeecCccCceeEEEe
Confidence 5554 11 12222 6789999999997 388999998 9999999 54 6788888 99999999875
Q ss_pred ---cCCEEEEEecCcEEEEEeCC-CcccccccccccCEEEEEe--CC-CEEEEEcCCCCeeeccccCCCC
Q 003171 468 ---FGSQIWVGYMNGIVQVLDLE-GNLLGGWVAHSSPVIKMAV--GA-GYIFTLANHGGIRGWNVTSPGP 530 (842)
Q Consensus 468 ---dG~~LasGs~DgtIrlWD~~-g~~i~~l~gH~~~V~sla~--dg-~~l~S~S~DgtIrvWd~~~~~~ 530 (842)
++++|++|+.|++|++||++ ++++..+.+|.+.|.++++ ++ ..+++++.|++|++|++....+
T Consensus 271 s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~~~ 340 (416)
T 2pm9_A 271 CHQDEHLLLSSGRDNTVLLWNPESAEQLSQFPARGNWCFKTKFAPEAPDLFACASFDNKIEVQTLQNLTN 340 (416)
T ss_dssp CSSCSSCEEEEESSSEEEEECSSSCCEEEEEECSSSCCCCEEECTTCTTEEEECCSSSEEEEEESCCCCC
T ss_pred CCCCCCeEEEEeCCCCEEEeeCCCCccceeecCCCCceEEEEECCCCCCEEEEEecCCcEEEEEccCCCC
Confidence 67899999999999999987 7889999999999999985 55 7899999999999999876543
|
| >1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A | Back alignment and structure |
|---|
Probab=99.94 E-value=1.3e-25 Score=243.74 Aligned_cols=267 Identities=10% Similarity=0.040 Sum_probs=201.9
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCCC--EEEeeCCCcEEEEe
Q 003171 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD--LWSGSEGGGIKIWP 268 (842)
Q Consensus 191 ~~~V~~la~dpdg~~LaSGs~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~--L~SgS~DgtIrvWd 268 (842)
..+|.|++|+|++++|++|+.||+|++|++.++. .......+.+|..+|++++|+|+++ |++|+.||+|++||
T Consensus 11 ~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~-----~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd 85 (342)
T 1yfq_A 11 KDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQA-----KNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVD 85 (342)
T ss_dssp SSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTT-----TEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEEC
T ss_pred CCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCC-----ccccceeeeecCCceEEEEECCCCCcEEEEEcCCCeEEEEE
Confidence 7799999999999999999999999999998751 1113556679999999999999998 68999999999999
Q ss_pred C-CCccceeecCCCceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcCCCCEEEEeC-CCcEEEEEccC-----
Q 003171 269 W-EAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDART----- 341 (842)
Q Consensus 269 ~-~t~~~~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s-~~tI~lWD~~t----- 341 (842)
+ .+... ..+ .+. .+...+.+++..+ +..+++++ +++|++||+.+
T Consensus 86 ~~~~~~~-~~~-------------------~~~--------~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~ 136 (342)
T 1yfq_A 86 LIGSPSF-QAL-------------------TNN--------EANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGV 136 (342)
T ss_dssp SSSSSSE-EEC-------------------BSC--------CCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBC
T ss_pred eccCCce-Eec-------------------ccc--------CCCCceEEEEeCC-CCEEEEEcCCCeEEEEccccccccc
Confidence 9 76432 111 110 0144677888887 77777766 67999999987
Q ss_pred ----CcEEEEeecCCceEeeeecccCCCcccccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEeec---Cc
Q 003171 342 ----RELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAK---GG 414 (842)
Q Consensus 342 ----g~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~---g~ 414 (842)
++++.++. +..... .+.+.++. .+++..++..+++.. +.
T Consensus 137 ~~~~~~~~~~~~-~~~~v~-------------------------------~~~~~~~~--l~~~~~d~~i~i~d~~~~~~ 182 (342)
T 1yfq_A 137 IAVKNLNSNNTK-VKNKIF-------------------------------TMDTNSSR--LIVGMNNSQVQWFRLPLCED 182 (342)
T ss_dssp EEEEESCSSSSS-SCCCEE-------------------------------EEEECSSE--EEEEESTTEEEEEESSCCTT
T ss_pred ccccCCeeeEEe-eCCceE-------------------------------EEEecCCc--EEEEeCCCeEEEEECCcccc
Confidence 55433333 111111 12222222 455555555554431 11
Q ss_pred ------cccCCCceEEEEECC-CCc-EEEEeCCCeEEEEcC-CC------CeeeeeecCCc---------cEEEEEe--c
Q 003171 415 ------FGDDNRRTEALTTSI-DGM-IWTGGANGLLLQWDP-NG------NRLQDFQYLPF---------AVQCLCT--F 468 (842)
Q Consensus 415 ------~~~~~~~v~al~~s~-dg~-l~Sgs~DgtIrlWD~-~g------~~l~~l~~H~~---------~V~sls~--d 468 (842)
...+...+.+++++| ++. +++|+.||.|++||. .+ +.+..+.+|.. .|.++++ +
T Consensus 183 ~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~ 262 (342)
T 1yfq_A 183 DNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPR 262 (342)
T ss_dssp CCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTT
T ss_pred ccceeeecCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCcccccccceeeecccccccccccceeEEEEEEcCC
Confidence 113556789999999 876 899999999999999 44 77888888865 9999865 7
Q ss_pred CCEEEEEecCcEEEEEeCC-Cccccccccc-ccCEEEEEeCCCEEEEEcCCCC-eeeccc
Q 003171 469 GSQIWVGYMNGIVQVLDLE-GNLLGGWVAH-SSPVIKMAVGAGYIFTLANHGG-IRGWNV 525 (842)
Q Consensus 469 G~~LasGs~DgtIrlWD~~-g~~i~~l~gH-~~~V~sla~dg~~l~S~S~Dgt-IrvWd~ 525 (842)
|++|++|+.||+|++||+. ++++..+.+| .+.|.+++++++++++++.|++ .+.|..
T Consensus 263 ~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~l~s~s~Dg~~~~~~~~ 322 (342)
T 1yfq_A 263 HKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIACSDNILCLATSDDTFKTNAAI 322 (342)
T ss_dssp TCCEEEEETTSCEEEEETTTTEEEEECCCCSSSEEEEEEECSSEEEEEEECTHHHHCSSS
T ss_pred CCEEEEecCCceEEEEcCccHhHhhhhhcccCCCceEecCCCCeEEEEecCCcccccccc
Confidence 8999999999999999997 7889999999 9999999999999999999999 777764
|
| >1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A | Back alignment and structure |
|---|
Probab=99.94 E-value=4.4e-25 Score=238.07 Aligned_cols=237 Identities=19% Similarity=0.286 Sum_probs=187.8
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEec--ccCCcEEEEEEecCCC-EEEeeCCCcEEEE
Q 003171 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQ--AHRGPVLSLCISSYGD-LWSGSEGGGIKIW 267 (842)
Q Consensus 191 ~~~V~~la~dpdg~~LaSGs~DGtIrlWdl~~g~~~~~~~~~~~~~l~--gH~~~V~slafs~dG~-L~SgS~DgtIrvW 267 (842)
..+|.|++++|++++|++|+ ||+|++|++.++. .......+. +|..+|++++|+|+|+ |++|+.|++|++|
T Consensus 51 ~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~-----~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~ 124 (337)
T 1gxr_A 51 GEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPG-----NKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIW 124 (337)
T ss_dssp SSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTT-----CCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEE
T ss_pred CCceEEEEEecCCcEEEEcC-CCeEEEEECCCCC-----ceeeeecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEE
Confidence 78999999999999999999 9999999998752 112233333 8999999999999998 7899999999999
Q ss_pred eCCCccceeecCCCceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcCCCCEEEEeC-CCcEEEEEccCCcEEE
Q 003171 268 PWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLK 346 (842)
Q Consensus 268 d~~t~~~~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s-~~tI~lWD~~tg~~l~ 346 (842)
|+.+.+..... . +.++ ...+.+++..+++..+++++ ++.|++||+.+++++.
T Consensus 125 d~~~~~~~~~~--------~---------~~~~----------~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~ 177 (337)
T 1gxr_A 125 DLAAPTPRIKA--------E---------LTSS----------APACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVR 177 (337)
T ss_dssp ECCCC--EEEE--------E---------EECS----------SSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEE
T ss_pred ECCCCCcceee--------e---------cccC----------CCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCceee
Confidence 99764321100 0 0111 34577888888888888776 5789999999887655
Q ss_pred EeecCCceEeeeecccCCCcccccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEeecCccccCCCceEEEE
Q 003171 347 VFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALT 426 (842)
Q Consensus 347 ~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~al~ 426 (842)
.+.. |...+.+++
T Consensus 178 ~~~~-------------------------------------------------------------------~~~~i~~~~ 190 (337)
T 1gxr_A 178 QFQG-------------------------------------------------------------------HTDGASCID 190 (337)
T ss_dssp EECC-------------------------------------------------------------------CSSCEEEEE
T ss_pred eeec-------------------------------------------------------------------ccCceEEEE
Confidence 4422 223456778
Q ss_pred ECCCCc-EEEEeCCCeEEEEcC-CCCeeeeeecCCccEEEEEe--cCCEEEEEecCcEEEEEeCCCcccccccccccCEE
Q 003171 427 TSIDGM-IWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQCLCT--FGSQIWVGYMNGIVQVLDLEGNLLGGWVAHSSPVI 502 (842)
Q Consensus 427 ~s~dg~-l~Sgs~DgtIrlWD~-~g~~l~~l~~H~~~V~sls~--dG~~LasGs~DgtIrlWD~~g~~i~~l~gH~~~V~ 502 (842)
++|++. +++++.|+.|++||+ +++++..+ .|...|.++++ +|++|++|+.|+.|++||+.......+.+|...|.
T Consensus 191 ~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~v~ 269 (337)
T 1gxr_A 191 ISNDGTKLWTGGLDNTVRSWDLREGRQLQQH-DFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLHLHESCVL 269 (337)
T ss_dssp ECTTSSEEEEEETTSEEEEEETTTTEEEEEE-ECSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEEEECCCSSCEE
T ss_pred ECCCCCEEEEEecCCcEEEEECCCCceEeee-cCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCCeEEEcCCcccee
Confidence 888886 889999999999999 67777766 47788998864 78999999999999999998655567889999999
Q ss_pred EEEe--CCCEEEEEcCCCCeeeccccCC
Q 003171 503 KMAV--GAGYIFTLANHGGIRGWNVTSP 528 (842)
Q Consensus 503 sla~--dg~~l~S~S~DgtIrvWd~~~~ 528 (842)
++++ +++++++++.|+.|++|++.+.
T Consensus 270 ~~~~~~~~~~l~~~~~dg~i~~~~~~~~ 297 (337)
T 1gxr_A 270 SLKFAYCGKWFVSTGKDNLLNAWRTPYG 297 (337)
T ss_dssp EEEECTTSSEEEEEETTSEEEEEETTTC
T ss_pred EEEECCCCCEEEEecCCCcEEEEECCCC
Confidence 9985 6889999999999999998764
|
| >4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A | Back alignment and structure |
|---|
Probab=99.94 E-value=6.2e-26 Score=252.50 Aligned_cols=278 Identities=12% Similarity=0.081 Sum_probs=182.4
Q ss_pred cCceeEEEEecCC-EEEE-ec--------CCCEEEEeCCCCccccccccccccCCCCCCCCCCeee-eeec-CCCeEEEE
Q 003171 131 IGCFLRTIVCTEE-QLWA-GG--------ENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKE-SVKG-VSSVMCMV 198 (842)
Q Consensus 131 ~~~~~~~l~~~~~-~l~~-~~--------D~~vrvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g-~~~V~~la 198 (842)
.|.+++++++..+ ++++ |. ++.|++|++........ .......+ .+.+ ...|.|++
T Consensus 13 ~g~PV~sv~fs~dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~------------~~~~~~~~~~l~~~~~~v~s~~ 80 (365)
T 4h5i_A 13 VGYPAYGAKFLNNDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEK------------EQFHILSEFALEDNDDSPTAID 80 (365)
T ss_dssp CSSCEEEEEEEETTEEEEEEECCSSSSSCCEEEEEEEECTTSSSHH------------HHEEEEEEEECCTTSCCCCEEE
T ss_pred CCCCEEEEEEeCCCcEEEEECCCccccCCCCEEEEEEEcCCCccee------------eeeeeeeEEEccCCCCceEEEE
Confidence 4667888887644 5554 32 33599999864322110 00000000 1111 45677877
Q ss_pred EcCCCCEEEEE-----------eCCCcEEEEECCCCccCCCCCcceeEE-----ecccCCcEEEEEEecCCC-EE--Eee
Q 003171 199 GDEASGVVWSG-----------HRDGRIMCWKMNARLLDSDDGFGEVLS-----WQAHRGPVLSLCISSYGD-LW--SGS 259 (842)
Q Consensus 199 ~dpdg~~LaSG-----------s~DGtIrlWdl~~g~~~~~~~~~~~~~-----l~gH~~~V~slafs~dG~-L~--SgS 259 (842)
++. +.+++| +.|+++|+|++.+.. ...+.... ...|...|.+|+|||||+ |+ ||+
T Consensus 81 ~~~--~~~~~g~~~~~~~l~s~~~d~~~r~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~~la~as~~ 154 (365)
T 4h5i_A 81 ASK--GIILVGCNENSTKITQGKGNKHLRKFKYDKVN----DQLEFLTSVDFDASTNADDYTKLVYISREGTVAAIASSK 154 (365)
T ss_dssp EET--TEEEEECCCCHHHHHHTSCCCCEEEEEEETTT----TEEEEEEEECSSCCCCTTCCEEEEEECTTSSCEEEEESC
T ss_pred eCC--CEEEEEECCCccEEEEecCCCcEEEEEecCCC----ceEEEeeeeceeecCCcccCEEEEEEcCCCCEEEEEECC
Confidence 653 455554 567899999987652 00111111 123456799999999998 44 667
Q ss_pred CCCcEEEEeCCCccceeecCCCceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcCCCCEEEEeCCCcEEEEEc
Q 003171 260 EGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGFLSFALWDA 339 (842)
Q Consensus 260 ~DgtIrvWd~~t~~~~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s~~tI~lWD~ 339 (842)
.|++|||||+.+++....+. +...|..+++++++..+++++++++++|+.
T Consensus 155 ~d~~i~iwd~~~~~~~~~~~------------------------------~~~~V~~v~fspdg~~l~s~s~~~~~~~~~ 204 (365)
T 4h5i_A 155 VPAIMRIIDPSDLTEKFEIE------------------------------TRGEVKDLHFSTDGKVVAYITGSSLEVIST 204 (365)
T ss_dssp SSCEEEEEETTTTEEEEEEE------------------------------CSSCCCEEEECTTSSEEEEECSSCEEEEET
T ss_pred CCCEEEEeECCCCcEEEEeC------------------------------CCCceEEEEEccCCceEEeccceeEEEEEe
Confidence 89999999997754332211 134577899999999999999989999999
Q ss_pred cCCcEEEEe--ecCCceEeeeecccCCCcccccceEEEEEecCCCCccceeeeEeecCcceEEecCCc----EEEEee--
Q 003171 340 RTRELLKVF--NIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADA----VRRVAA-- 411 (842)
Q Consensus 340 ~tg~~l~~l--~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~----v~~v~~-- 411 (842)
.+++.+... ..+......+.+ .+++...+.+..++ ..+.+.
T Consensus 205 ~~~~~~~~~~~~~~~~~v~~v~f-------------------------------spdg~~l~~~s~d~~~~~~i~~~~~~ 253 (365)
T 4h5i_A 205 VTGSCIARKTDFDKNWSLSKINF-------------------------------IADDTVLIAASLKKGKGIVLTKISIK 253 (365)
T ss_dssp TTCCEEEEECCCCTTEEEEEEEE-------------------------------EETTEEEEEEEESSSCCEEEEEEEEE
T ss_pred ccCcceeeeecCCCCCCEEEEEE-------------------------------cCCCCEEEEEecCCcceeEEeecccc
Confidence 988875433 223333233333 33333333322221 111111
Q ss_pred --------cCccccCCCceEEEEECCCCc-EEEEeCCCeEEEEcC-CCCeeeee-ecCCccEEEEEe--cCCEEEEEecC
Q 003171 412 --------KGGFGDDNRRTEALTTSIDGM-IWTGGANGLLLQWDP-NGNRLQDF-QYLPFAVQCLCT--FGSQIWVGYMN 478 (842)
Q Consensus 412 --------~g~~~~~~~~v~al~~s~dg~-l~Sgs~DgtIrlWD~-~g~~l~~l-~~H~~~V~sls~--dG~~LasGs~D 478 (842)
...+..|...|.+++|+|||+ |++|+.|++|+|||+ ++++++++ .+|..+|+++++ ||++|++||.|
T Consensus 254 ~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~~~~~~~~gH~~~V~~v~fSpdg~~laS~S~D 333 (365)
T 4h5i_A 254 SGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLASNDNSIALVKLKDLSMSKIFKQAHSFAITEVTISPDSTYVASVSAA 333 (365)
T ss_dssp TTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEETTSSSSCEEEEEECTTSCEEEEEETT
T ss_pred cceecceeeeeecCCCCCeEeEEECCCCCceEEEcCCCEEEEEECCCCcEEEEecCcccCCEEEEEECCCCCEEEEEeCC
Confidence 113456778899999999998 789999999999999 78999875 789999999864 89999999999
Q ss_pred cEEEEEeCC
Q 003171 479 GIVQVLDLE 487 (842)
Q Consensus 479 gtIrlWD~~ 487 (842)
++|||||+.
T Consensus 334 ~tvrvw~ip 342 (365)
T 4h5i_A 334 NTIHIIKLP 342 (365)
T ss_dssp SEEEEEECC
T ss_pred CeEEEEEcC
Confidence 999999985
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=99.94 E-value=2.2e-24 Score=262.89 Aligned_cols=271 Identities=15% Similarity=0.142 Sum_probs=213.3
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCCC-EEEeeCCCcEEEEeC
Q 003171 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPW 269 (842)
Q Consensus 191 ~~~V~~la~dpdg~~LaSGs~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~ 269 (842)
.+.|.|++|+|++++|++|+.||+|++||+.++ .....+.+|.++|++++|+|+|+ |++|+.||+|+|||+
T Consensus 13 ~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~--------~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~ 84 (814)
T 3mkq_A 13 SDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQ--------VEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNY 84 (814)
T ss_dssp CSCEEEEEECSSSSEEEEEETTSEEEEEETTTT--------EEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEET
T ss_pred CCceEEEEECCCCCEEEEEeCCCEEEEEECCCC--------ceEEEEecCCCcEEEEEEeCCCCEEEEEeCCCeEEEEEC
Confidence 789999999999999999999999999999987 67888999999999999999998 789999999999999
Q ss_pred CCccceeecCCCceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcCCCCEEEEeC-CCcEEEEEccCC-cEEEE
Q 003171 270 EAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTR-ELLKV 347 (842)
Q Consensus 270 ~t~~~~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s-~~tI~lWD~~tg-~~l~~ 347 (842)
.+++....+. +| ...+.++++++++..+++++ +++|++||+.++ .+...
T Consensus 85 ~~~~~~~~~~-------------------~~----------~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~ 135 (814)
T 3mkq_A 85 NTGEKVVDFE-------------------AH----------PDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQT 135 (814)
T ss_dssp TTCCEEEEEE-------------------CC----------SSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEEE
T ss_pred CCCcEEEEEe-------------------cC----------CCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceEEEE
Confidence 7754322221 11 45688889998888888877 579999999987 66666
Q ss_pred eecCCceEeeeecccCCCcccccceEEEEEecCCCCccceeeeEee-cCcceEEecCCcEEEEeec--C----ccc-cCC
Q 003171 348 FNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQ-RSRNAIMGAADAVRRVAAK--G----GFG-DDN 419 (842)
Q Consensus 348 l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~-~~~~~~~g~~~~v~~v~~~--g----~~~-~~~ 419 (842)
+..|......+ .|.+ ++...+++..++..+++.. + .+. .+.
T Consensus 136 ~~~~~~~v~~~-------------------------------~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~ 184 (814)
T 3mkq_A 136 FEGHEHFVMCV-------------------------------AFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQE 184 (814)
T ss_dssp EECCSSCEEEE-------------------------------EEETTEEEEEEEEETTSEEEEEETTCSSCSEEEECCCT
T ss_pred EcCCCCcEEEE-------------------------------EEEcCCCCEEEEEeCCCeEEEEECCCCcceeEEecCCC
Confidence 66655433222 2333 2334455566665555541 1 111 233
Q ss_pred CceEEEEECC--CCc-EEEEeCCCeEEEEcC-CCCeeeeeecCCccEEEEE--ecCCEEEEEecCcEEEEEeCC-Ccccc
Q 003171 420 RRTEALTTSI--DGM-IWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQCLC--TFGSQIWVGYMNGIVQVLDLE-GNLLG 492 (842)
Q Consensus 420 ~~v~al~~s~--dg~-l~Sgs~DgtIrlWD~-~g~~l~~l~~H~~~V~sls--~dG~~LasGs~DgtIrlWD~~-g~~i~ 492 (842)
..+..++++| ++. +++|+.||+|++||. +++++.++.+|...|.+++ ++|++|++|+.||+|++||+. ++++.
T Consensus 185 ~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~ 264 (814)
T 3mkq_A 185 RGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEK 264 (814)
T ss_dssp TCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCSEEE
T ss_pred CCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEE
Confidence 6788899998 776 899999999999999 7899999999999999886 478899999999999999997 78899
Q ss_pred cccccccCEEEEEe--CCCE-EEEEcCCCCeeeccccCCC
Q 003171 493 GWVAHSSPVIKMAV--GAGY-IFTLANHGGIRGWNVTSPG 529 (842)
Q Consensus 493 ~l~gH~~~V~sla~--dg~~-l~S~S~DgtIrvWd~~~~~ 529 (842)
.+..|...|+++++ ++.. ++..+.|+.+.+|++....
T Consensus 265 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (814)
T 3mkq_A 265 TLNVGLERSWCIATHPTGRKNYIASGFDNGFTVLSLGNDE 304 (814)
T ss_dssp EECCSSSSEEEEEECTTCGGGEEEEEETTEEEEEECSCCS
T ss_pred EeecCCCcEEEEEEccCCCceEEEEEeCCCEEEEEcCCCC
Confidence 99999999999985 4442 3566668889999976543
|
| >2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.94 E-value=7.7e-26 Score=264.18 Aligned_cols=236 Identities=13% Similarity=-0.029 Sum_probs=164.9
Q ss_pred cCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecC------CC-EEEeeCCCcEEEEeCCCc
Q 003171 200 DEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSY------GD-LWSGSEGGGIKIWPWEAI 272 (842)
Q Consensus 200 dpdg~~LaSGs~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~d------G~-L~SgS~DgtIrvWd~~t~ 272 (842)
+|++++++||+.|++|+||++.++. .......++.+|.+.|++|+|+|+ +. |+|||.||+|||||+.+.
T Consensus 170 ~~~~~~laS~s~D~tI~iWd~~~~~----~~~~~~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~ 245 (524)
T 2j04_B 170 NEHLEMFDKEKHSSCIQIFKMNTST----LHCVKVQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDN 245 (524)
T ss_dssp ------------CEEEEEEEEETTT----CCEEEEEEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCC
T ss_pred chhhhhhccCCCCceEEEEEccCCC----CCceEEEEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCC
Confidence 5677889999999999999998752 011112456788999999999997 34 789999999999999764
Q ss_pred ccee--ecCCCceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcCCCCEEEEeC-CCcEEEEEccCCcE-EEEe
Q 003171 273 EKAL--SLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTREL-LKVF 348 (842)
Q Consensus 273 ~~~l--~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s-~~tI~lWD~~tg~~-l~~l 348 (842)
.... ..... .....+.+| ...+.++++.+++ .|++++ |++|++||++++.. ..+
T Consensus 246 ~~~~~~~~~~~----------~p~~~l~~h----------~~~v~sv~~s~~~-~lasgs~DgtV~lWD~~~~~~~~~~- 303 (524)
T 2j04_B 246 ATDVHVFKMCE----------KPSLTLSLA----------DSLITTFDFLSPT-TVVCGFKNGFVAEFDLTDPEVPSFY- 303 (524)
T ss_dssp SSSSSEEECCC----------SCSEEECCT----------TTCEEEEEESSSS-EEEEEETTSEEEEEETTBCSSCSEE-
T ss_pred ccccccceeec----------CceEEEEcC----------CCCEEEEEecCCC-eEEEEeCCCEEEEEECCCCCCceEE-
Confidence 3110 00000 000112222 4567888887654 677766 68999999986531 111
Q ss_pred ecCCceEeeeecccCCCcccccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEeecCccccCCCceEEE--E
Q 003171 349 NIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEAL--T 426 (842)
Q Consensus 349 ~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~al--~ 426 (842)
+..|...|.++ +
T Consensus 304 ------------------------------------------------------------------~~~H~~~V~sv~~~ 317 (524)
T 2j04_B 304 ------------------------------------------------------------------DQVHDSYILSVSTA 317 (524)
T ss_dssp ------------------------------------------------------------------EECSSSCEEEEEEE
T ss_pred ------------------------------------------------------------------eecccccEEEEEEE
Confidence 11344456666 5
Q ss_pred ECCCC-c-EEEEeCCCeEEEEcC-CCCeeeeeecCCc--cEEEE--EecCCEEEEEecCcEEEEEeCC-Ccccccccccc
Q 003171 427 TSIDG-M-IWTGGANGLLLQWDP-NGNRLQDFQYLPF--AVQCL--CTFGSQIWVGYMNGIVQVLDLE-GNLLGGWVAHS 498 (842)
Q Consensus 427 ~s~dg-~-l~Sgs~DgtIrlWD~-~g~~l~~l~~H~~--~V~sl--s~dG~~LasGs~DgtIrlWD~~-g~~i~~l~gH~ 498 (842)
++++| + |+|||.|++|||||+ +++++.++.+|.. .|.++ +++|+.+++|+.|++|+|||++ +.++.++.+|.
T Consensus 318 ~s~~g~~~laS~S~D~tvklWD~~~~~~~~~~~~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~~~l~gH~ 397 (524)
T 2j04_B 318 YSDFEDTVVSTVAVDGYFYIFNPKDIATTKTTVSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAFAVHPLVSRE 397 (524)
T ss_dssp CCTTSCCEEEEEETTSEEEEECGGGHHHHCEEEEECSCCSCCCEEEETTTTEEEEECSSSEEEEEETTCTTCCEEEEECS
T ss_pred cCCCCCeEEEEeccCCeEEEEECCCCCcccccccccccCcccceEeCCCcCeEEEeCCCCcEEEEECcccccceeeecCC
Confidence 78887 5 799999999999999 7888888888764 46655 5578899999999999999987 67888899999
Q ss_pred cCEEEEEe--CCCEEEEEcCCCCeeeccccC
Q 003171 499 SPVIKMAV--GAGYIFTLANHGGIRGWNVTS 527 (842)
Q Consensus 499 ~~V~sla~--dg~~l~S~S~DgtIrvWd~~~ 527 (842)
+.|++|++ +++.|+|||.|++|++||+..
T Consensus 398 ~~V~sva~Sp~g~~l~Sgs~Dgtv~lwd~~~ 428 (524)
T 2j04_B 398 TTITAIGVSRLHPMVLAGSADGSLIITNAAR 428 (524)
T ss_dssp SCEEEEECCSSCCBCEEEETTTEEECCBSCS
T ss_pred CceEEEEeCCCCCeEEEEECCCEEEEEechH
Confidence 99999984 788999999999999999643
|
| >3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A | Back alignment and structure |
|---|
Probab=99.93 E-value=3.3e-25 Score=241.95 Aligned_cols=239 Identities=14% Similarity=0.161 Sum_probs=188.1
Q ss_pred CCCeEEEEEcCC----CCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEecc-----cCCcEEEEEEecC----CC-EE
Q 003171 191 VSSVMCMVGDEA----SGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQA-----HRGPVLSLCISSY----GD-LW 256 (842)
Q Consensus 191 ~~~V~~la~dpd----g~~LaSGs~DGtIrlWdl~~g~~~~~~~~~~~~~l~g-----H~~~V~slafs~d----G~-L~ 256 (842)
.++|.|++|+|+ ...+++++.++.|++|++.++ +.+..+++ |.+.|++++|+|+ |. |+
T Consensus 18 ~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~--------~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~ 89 (366)
T 3k26_A 18 NQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQ--------GEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLA 89 (366)
T ss_dssp CSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGG--------GCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEE
T ss_pred CCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCC--------cEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEE
Confidence 789999999984 566777777789999999876 44445544 5688999999999 54 78
Q ss_pred EeeCCCcEEEEeCCCccceeecCCCceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcC-CCCEEEEeC-CCcE
Q 003171 257 SGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDH-SRAKVWSAG-FLSF 334 (842)
Q Consensus 257 SgS~DgtIrvWd~~t~~~~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~-~~~~v~s~s-~~tI 334 (842)
+|+.||+|++||+.+++....+. +| ...+.++++.+ ++..+++++ +++|
T Consensus 90 ~~~~dg~i~v~d~~~~~~~~~~~-------------------~~----------~~~i~~~~~~~~~~~~l~s~~~dg~i 140 (366)
T 3k26_A 90 VAGSRGIIRIINPITMQCIKHYV-------------------GH----------GNAINELKFHPRDPNLLLSVSKDHAL 140 (366)
T ss_dssp EEETTCEEEEECTTTCCEEEEEE-------------------SC----------CSCEEEEEECSSCTTEEEEEETTSCE
T ss_pred EecCCCEEEEEEchhceEeeeec-------------------CC----------CCcEEEEEECCCCCCEEEEEeCCCeE
Confidence 99999999999997654322111 11 45688888888 778888877 6799
Q ss_pred EEEEccCCcEEEEeecCCceEeeeecccCCCcccccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEeecCc
Q 003171 335 ALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGG 414 (842)
Q Consensus 335 ~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~ 414 (842)
++||+.+++.+..+..
T Consensus 141 ~iwd~~~~~~~~~~~~---------------------------------------------------------------- 156 (366)
T 3k26_A 141 RLWNIQTDTLVAIFGG---------------------------------------------------------------- 156 (366)
T ss_dssp EEEETTTTEEEEEECS----------------------------------------------------------------
T ss_pred EEEEeecCeEEEEecc----------------------------------------------------------------
Confidence 9999998876554311
Q ss_pred cccCCCceEEEEECCCCc-EEEEeCCCeEEEEcC-CCCeeeeeec----------------------------CCccEEE
Q 003171 415 FGDDNRRTEALTTSIDGM-IWTGGANGLLLQWDP-NGNRLQDFQY----------------------------LPFAVQC 464 (842)
Q Consensus 415 ~~~~~~~v~al~~s~dg~-l~Sgs~DgtIrlWD~-~g~~l~~l~~----------------------------H~~~V~s 464 (842)
+..|...|.+++++|++. +++|+.||+|++||+ +++++..+.. |...|.+
T Consensus 157 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 236 (366)
T 3k26_A 157 VEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDC 236 (366)
T ss_dssp TTSCSSCEEEEEECTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCE
T ss_pred cccccCceeEEEECCCCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEE
Confidence 123345577888999886 889999999999999 5665555544 9999999
Q ss_pred EEecCCEEEEEecCcEEEEEeCC-Cc--------------ccccccccccCEEEEE--eC--CCEEEEEcCCCCeeeccc
Q 003171 465 LCTFGSQIWVGYMNGIVQVLDLE-GN--------------LLGGWVAHSSPVIKMA--VG--AGYIFTLANHGGIRGWNV 525 (842)
Q Consensus 465 ls~dG~~LasGs~DgtIrlWD~~-g~--------------~i~~l~gH~~~V~sla--~d--g~~l~S~S~DgtIrvWd~ 525 (842)
++++|++|++|+.|+.|++||+. ++ ++..+.+|...|++++ ++ ++++++++.|+.|++||+
T Consensus 237 ~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~ 316 (366)
T 3k26_A 237 VRWLGDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQVGKLYVWDL 316 (366)
T ss_dssp EEEETTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSSEEEEECTTSCEEEEEC
T ss_pred EEEcCCEEEEEecCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCCcEEEEEecCCcEEEEEC
Confidence 99989999999999999999975 32 3677888999998876 57 899999999999999998
Q ss_pred cCCCC
Q 003171 526 TSPGP 530 (842)
Q Consensus 526 ~~~~~ 530 (842)
....+
T Consensus 317 ~~~~~ 321 (366)
T 3k26_A 317 EVEDP 321 (366)
T ss_dssp CSSSG
T ss_pred CCCCC
Confidence 76543
|
| >4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a | Back alignment and structure |
|---|
Probab=99.93 E-value=1.6e-23 Score=226.82 Aligned_cols=272 Identities=18% Similarity=0.203 Sum_probs=193.7
Q ss_pred ceeEEEEecC---CEEEE-ecCCCEEEEeCCCCccccccccccccCCCCCCCCCCee-eeeecCCCeEEEEEcCCCCEEE
Q 003171 133 CFLRTIVCTE---EQLWA-GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFK-ESVKGVSSVMCMVGDEASGVVW 207 (842)
Q Consensus 133 ~~~~~l~~~~---~~l~~-~~D~~vrvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~~~V~~la~dpdg~~La 207 (842)
..+.+|+... +.|.+ |.|++|||||+.+...... .+.. ...| ..+|.|++|+|++++|+
T Consensus 39 ~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~---------------~~~~~l~~h-~~~V~~~~~s~dg~~l~ 102 (340)
T 4aow_A 39 GWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYG---------------IPQRALRGH-SHFVSDVVISSDGQFAL 102 (340)
T ss_dssp SCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSE---------------EEEEEECCC-SSCEEEEEECTTSSEEE
T ss_pred CCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccc---------------eeeEEEeCC-CCCEEEEEECCCCCEEE
Confidence 3577777752 24444 5799999999975432110 1111 1123 78999999999999999
Q ss_pred EEeCCCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCCC-EEEeeCCCcEEEEeCCCccceeecCCCceeee
Q 003171 208 SGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEKALSLKPEERHTA 286 (842)
Q Consensus 208 SGs~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~~t~~~~l~~~~~~~~~~ 286 (842)
+|+.||.|++|+.... ........|...+..+.+++++. |++|+.|+.+++||..........
T Consensus 103 s~~~d~~i~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~~-------- 166 (340)
T 4aow_A 103 SGSWDGTLRLWDLTTG--------TTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQ-------- 166 (340)
T ss_dssp EEETTSEEEEEETTTT--------EEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEEC--------
T ss_pred EEcccccceEEeeccc--------ceeeeecCCCCceeEEEEeecCccceeecCCCeEEEEEeCCCceEEEE--------
Confidence 9999999999999886 56667788899999999999987 899999999999998653221110
Q ss_pred EEEEeeceeecccceeccceeeeecCCEEEEEEcCCC--CEEEEeC-CCcEEEEEccCCcEEEEeecCCceEeeeecccC
Q 003171 287 ALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSR--AKVWSAG-FLSFALWDARTRELLKVFNIDGQIENRVDMSLL 363 (842)
Q Consensus 287 ~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~--~~v~s~s-~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~ 363 (842)
+.++ ...+..+++...+ ..+++++ +++|++||+.+++++..+.+|...+..+.
T Consensus 167 ----------~~~~----------~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~---- 222 (340)
T 4aow_A 167 ----------DESH----------SEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVT---- 222 (340)
T ss_dssp ----------SSSC----------SSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEE----
T ss_pred ----------eccc----------cCcccceEEccCCCCcEEEEEcCCCEEEEEECCCCceeeEecCCCCcEEEEE----
Confidence 0111 2345555554432 3445554 67999999999999888876654433333
Q ss_pred CCcccccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEeec--Cc---cccCCCceEEEEECCCCcEEEEeC
Q 003171 364 PDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAK--GG---FGDDNRRTEALTTSIDGMIWTGGA 438 (842)
Q Consensus 364 ~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~--g~---~~~~~~~v~al~~s~dg~l~Sgs~ 438 (842)
|.+++...++|..++..+++.. +. ...+...+.++.++|++.+++++.
T Consensus 223 ---------------------------~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 275 (340)
T 4aow_A 223 ---------------------------VSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGDIINALCFSPNRYWLCAAT 275 (340)
T ss_dssp ---------------------------ECTTSSEEEEEETTCEEEEEETTTTEEEEEEECSSCEEEEEECSSSSEEEEEE
T ss_pred ---------------------------ECCCCCEEEEEeCCCeEEEEEeccCceeeeecCCceEEeeecCCCCceeeccC
Confidence 3333444455666666555541 11 112446788999999999999999
Q ss_pred CCeEEEEcCC-CCeeeeee---------cCCccEEEEEe--cCCEEEEEecCcEEEEEeCC
Q 003171 439 NGLLLQWDPN-GNRLQDFQ---------YLPFAVQCLCT--FGSQIWVGYMNGIVQVLDLE 487 (842)
Q Consensus 439 DgtIrlWD~~-g~~l~~l~---------~H~~~V~sls~--dG~~LasGs~DgtIrlWD~~ 487 (842)
|++|++||+. +.++..+. +|...|+++++ +|++|++|+.||+|+|||++
T Consensus 276 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~Dg~v~iW~~~ 336 (340)
T 4aow_A 276 GPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQVT 336 (340)
T ss_dssp TTEEEEEETTTTEEEEEECCC-------CCCCCEEEEEECTTSSEEEEEETTSCEEEEEEE
T ss_pred CCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECCCCCEEEEEeCCCEEEEEeCC
Confidence 9999999994 55555543 68899999864 78999999999999999986
|
| >4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A | Back alignment and structure |
|---|
Probab=99.93 E-value=2e-25 Score=250.58 Aligned_cols=256 Identities=9% Similarity=-0.031 Sum_probs=156.8
Q ss_pred EEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEec--------CCC-EEEeeCCCcEE
Q 003171 195 MCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISS--------YGD-LWSGSEGGGIK 265 (842)
Q Consensus 195 ~~la~dpdg~~LaSGs~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~--------dG~-L~SgS~DgtIr 265 (842)
....+.+++.+|+||+.|++||+||..++.. ........+.||++.|++|+|+| ||+ |+|||.|++||
T Consensus 93 ~~~~~~~~~~~las~~~d~~v~lw~~~~~~~---~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~ 169 (393)
T 4gq1_A 93 NVNSSPVYSLFLACVCQDNTVRLIITKNETI---ITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLI 169 (393)
T ss_dssp ----CCEEEEEEEEEETTSCEEEEEEETTEE---EEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEE
T ss_pred ceeecCCCCCEEEEEeCCCcEEEEECCCCcc---ceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEE
Confidence 3344455677899999999999999988620 00011234689999999999998 777 78999999999
Q ss_pred EEeCCCccceeecCCCceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcCCCC-EEEEeC-CCcEEEEEccCCc
Q 003171 266 IWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRA-KVWSAG-FLSFALWDARTRE 343 (842)
Q Consensus 266 vWd~~t~~~~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~-~v~s~s-~~tI~lWD~~tg~ 343 (842)
|||+.+..+..... + ....+.++++.+.+. ++++++ +++|++||+++++
T Consensus 170 ~Wd~~~~~~~~~~~-------------------~----------~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~ 220 (393)
T 4gq1_A 170 IWRLTDEGPILAGY-------------------P----------LSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNL 220 (393)
T ss_dssp EEEEETTEEEEEEE-------------------E----------CSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC
T ss_pred EEECCCCceeeeec-------------------C----------CCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCc
Confidence 99986543222111 1 145677888887764 577766 6899999999988
Q ss_pred EEEEeecCCceEeeeecccCCCcccccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEeecCccccCCCceE
Q 003171 344 LLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTE 423 (842)
Q Consensus 344 ~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~ 423 (842)
....+..+... ..... ++ ..... ... .....++...+.
T Consensus 221 ~~~~~~~~~~~------~~~~~-----------~s------------~~~~~--------~~~-----~~~~~~~~~~v~ 258 (393)
T 4gq1_A 221 SAEENSQTELV------KNPWL-----------LT------------LNTLP--------LVN-----TCHSSGIASSLA 258 (393)
T ss_dssp ----------C------SCCCS-----------EE------------EESGG--------GC-----------CCSSSCS
T ss_pred ccccccccCCc------ccceE-----------Ee------------ccccc--------cee-----eeecccccccce
Confidence 75544321110 00000 00 00000 000 001223455666
Q ss_pred EEEEC-CCCc-EEEEeCCCeEEEEcC-CCCeeeeeecCCccEEEEE--------------------e--cCCEEEEEecC
Q 003171 424 ALTTS-IDGM-IWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQCLC--------------------T--FGSQIWVGYMN 478 (842)
Q Consensus 424 al~~s-~dg~-l~Sgs~DgtIrlWD~-~g~~l~~l~~H~~~V~sls--------------------~--dG~~LasGs~D 478 (842)
++.++ +||. +++++.|+++++||+ .++....+..|...+..+. + ++.++++|+.|
T Consensus 259 ~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sgs~D 338 (393)
T 4gq1_A 259 NVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISLFPSLLGACPHPRYMDYFATAHSQH 338 (393)
T ss_dssp EEEEETTTTCEEEEECTTSEEEEEEC-------------------CCSCSEEEECSSCCSSCCEECSSCTTEEEEEETTT
T ss_pred eeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEccccccccccCcceeEEEccCCCCEEEEEECCC
Confidence 77764 7776 899999999999999 6777777766665554321 1 23478888999
Q ss_pred cEEEEEeCC-CcccccccccccCEEEEEe--CCCEEEEEcCCCCeeeccc
Q 003171 479 GIVQVLDLE-GNLLGGWVAHSSPVIKMAV--GAGYIFTLANHGGIRGWNV 525 (842)
Q Consensus 479 gtIrlWD~~-g~~i~~l~gH~~~V~sla~--dg~~l~S~S~DgtIrvWd~ 525 (842)
|+|+|||+. ++++..+.+|..+|.+|++ ||++|++++.|| +.+|.+
T Consensus 339 g~V~lwd~~~~~~~~~~~~~~~~V~svafspdG~~LA~as~~G-v~lvrL 387 (393)
T 4gq1_A 339 GLIQLINTYEKDSNSIPIQLGMPIVDFCWHQDGSHLAIATEGS-VLLTRL 387 (393)
T ss_dssp TEEEEEETTCTTCCEEEEECSSCEEEEEECTTSSEEEEEESSE-EEEEEE
T ss_pred CEEEEEECCCCcEEEEecCCCCcEEEEEEcCCCCEEEEEeCCC-eEEEEE
Confidence 999999987 7788888899999999984 899999998765 656654
|
| >2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A | Back alignment and structure |
|---|
Probab=99.93 E-value=4.2e-24 Score=230.02 Aligned_cols=240 Identities=10% Similarity=0.134 Sum_probs=167.6
Q ss_pred eeEEEEec--CCEEEE-ecCCCEEEEeCCCCccccccccccccCCCCCCCCCCeeeeeecCCCeEEEEEcCC--CCEEEE
Q 003171 134 FLRTIVCT--EEQLWA-GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEA--SGVVWS 208 (842)
Q Consensus 134 ~~~~l~~~--~~~l~~-~~D~~vrvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~V~~la~dpd--g~~LaS 208 (842)
.+++++.+ ++.|.+ +.|++|+|||+.+.... + . .....| .++|.+++|+++ +++|+|
T Consensus 11 ~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~-~--------------~--~~l~gH-~~~V~~v~~s~~~~g~~l~s 72 (297)
T 2pm7_B 11 MIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHK-L--------------I--DTLTGH-EGPVWRVDWAHPKFGTILAS 72 (297)
T ss_dssp CEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBC-C--------------C--EEECCC-SSCEEEEEECCGGGCSEEEE
T ss_pred ceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcE-E--------------E--EEEccc-cCCeEEEEecCCCcCCEEEE
Confidence 56677765 445655 56999999998642110 0 0 111234 789999999864 899999
Q ss_pred EeCCCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecC--CC-EEEeeCCCcEEEEeCCCccceeecCCCceee
Q 003171 209 GHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSY--GD-LWSGSEGGGIKIWPWEAIEKALSLKPEERHT 285 (842)
Q Consensus 209 Gs~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~d--G~-L~SgS~DgtIrvWd~~t~~~~l~~~~~~~~~ 285 (842)
|+.||+||+||+.++. ...+..+.+|..+|++++|+|+ |. |++|+.|++|++||+.+......
T Consensus 73 ~s~D~~v~iWd~~~~~------~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~-------- 138 (297)
T 2pm7_B 73 CSYDGKVMIWKEENGR------WSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSP-------- 138 (297)
T ss_dssp EETTTEEEEEEBSSSC------BCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCC--------
T ss_pred EcCCCEEEEEEcCCCc------eEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceee--------
Confidence 9999999999998752 1345678899999999999997 66 78999999999999965321100
Q ss_pred eEEEEeeceeecccceeccceeeeecCCEEEEEEcCC-------------CCEEEEeC-CCcEEEEEccCCcEEEEeecC
Q 003171 286 AALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHS-------------RAKVWSAG-FLSFALWDARTRELLKVFNID 351 (842)
Q Consensus 286 ~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~-------------~~~v~s~s-~~tI~lWD~~tg~~l~~l~~~ 351 (842)
. .+.+| ...+.++++++. +..+++++ |++|+|||+.+++....+.
T Consensus 139 ~---------~~~~h----------~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~-- 197 (297)
T 2pm7_B 139 I---------IIDAH----------AIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLE-- 197 (297)
T ss_dssp E---------EEECC----------SSCEEEEEECCCC------------CCEEEEEETTSCEEEEEEETTTTEEEEE--
T ss_pred e---------eeecc----------cCccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEE--
Confidence 0 00111 223444555443 35677766 6899999987654100000
Q ss_pred CceEeeeecccCCCcccccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEeecCccccCCCceEEEEECCCC
Q 003171 352 GQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDG 431 (842)
Q Consensus 352 ~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~al~~s~dg 431 (842)
..+.+|...|.+++|+|++
T Consensus 198 -------------------------------------------------------------~~l~~H~~~V~~v~~sp~~ 216 (297)
T 2pm7_B 198 -------------------------------------------------------------STLEGHSDWVRDVAWSPTV 216 (297)
T ss_dssp -------------------------------------------------------------EEECCCSSCEEEEEECCCC
T ss_pred -------------------------------------------------------------EEecCCCCceEEEEECCCC
Confidence 0123455678889999984
Q ss_pred ----cEEEEeCCCeEEEEcCC-CC---eeeee--ecCCccEEEEE--ecCCEEEEEecCcEEEEEeCC
Q 003171 432 ----MIWTGGANGLLLQWDPN-GN---RLQDF--QYLPFAVQCLC--TFGSQIWVGYMNGIVQVLDLE 487 (842)
Q Consensus 432 ----~l~Sgs~DgtIrlWD~~-g~---~l~~l--~~H~~~V~sls--~dG~~LasGs~DgtIrlWD~~ 487 (842)
.|++|+.|++|++||++ +. ....+ ..|...|.+++ ++|++|++|+.|++|+||+..
T Consensus 217 ~~~~~las~s~D~~v~iWd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~las~~~D~~v~lw~~~ 284 (297)
T 2pm7_B 217 LLRSYMASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKEN 284 (297)
T ss_dssp SSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEETTSCEEEEEEC
T ss_pred CCceEEEEEECCCcEEEEEeCCCCCccceeeeecccCCCcEEEEEECCCCCEEEEEcCCCcEEEEEEC
Confidence 48999999999999984 32 12233 46888999876 479999999999999999964
|
| >3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.93 E-value=2.6e-24 Score=242.85 Aligned_cols=304 Identities=13% Similarity=0.102 Sum_probs=199.3
Q ss_pred CceeEEEEecCC--EEEE-ecCCCEEEEeCCCCccccccccccccCCCCCCCCCCeeeeeec-C------------CCeE
Q 003171 132 GCFLRTIVCTEE--QLWA-GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKG-V------------SSVM 195 (842)
Q Consensus 132 ~~~~~~l~~~~~--~l~~-~~D~~vrvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~------------~~V~ 195 (842)
...+.+++.+.+ .|.+ +.|+.|+|||+.+...... ... .+... ...+.+ . .+|.
T Consensus 28 ~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~--------~~~-~~~~~-~~~~~~h~~~~~~~~~~~~~~~V~ 97 (447)
T 3dw8_B 28 ADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQS--------HSR-GEYNV-YSTFQSHEPEFDYLKSLEIEEKIN 97 (447)
T ss_dssp GGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----C--------CCC-CCEEE-EEEEECCCCEEEGGGTEEECCCCC
T ss_pred cCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCc--------ccc-cceeE-ecccccccccccccccccccCceE
Confidence 456778887644 5554 4699999999976432110 000 00000 111111 4 7899
Q ss_pred EEEEcCCC--CEEEEEeCCCcEEEEECCCCccC-------------------CCCCc------------ceeEE-ecccC
Q 003171 196 CMVGDEAS--GVVWSGHRDGRIMCWKMNARLLD-------------------SDDGF------------GEVLS-WQAHR 241 (842)
Q Consensus 196 ~la~dpdg--~~LaSGs~DGtIrlWdl~~g~~~-------------------~~~~~------------~~~~~-l~gH~ 241 (842)
+++|+|++ .+|++|+.||+|++|++.++... ....+ ..... ..+|.
T Consensus 98 ~l~~~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 177 (447)
T 3dw8_B 98 KIRWLPQKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHT 177 (447)
T ss_dssp EEEECCCCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCS
T ss_pred EEEEcCCCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCC
Confidence 99999998 89999999999999998763100 00000 00112 36899
Q ss_pred CcEEEEEEecCCC-EEEeeCCCcEEEEeCCCccceeecCCCceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEc
Q 003171 242 GPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSD 320 (842)
Q Consensus 242 ~~V~slafs~dG~-L~SgS~DgtIrvWd~~t~~~~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~ 320 (842)
..|++++|+|+|+ |++| .|++|++||+.+....+.... .....+.+| ...+.+++++
T Consensus 178 ~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~-----------~~~~~~~~~----------~~~v~~~~~~ 235 (447)
T 3dw8_B 178 YHINSISINSDYETYLSA-DDLRINLWHLEITDRSFNIVD-----------IKPANMEEL----------TEVITAAEFH 235 (447)
T ss_dssp SCCCEEEECTTSSEEEEE-CSSEEEEEETTEEEEEEEEEE-----------CCCSSGGGC----------CCCEEEEEEC
T ss_pred cceEEEEEcCCCCEEEEe-CCCeEEEEECCCCCceeeeee-----------ccccccccc----------CcceEEEEEC
Confidence 9999999999998 6787 799999999974322221100 000001112 4568889998
Q ss_pred CCC-CEEEEeC-CCcEEEEEccCCcE----EEEeecCCceEeeeecccCCCcccccceEEEEEecCCCCccceeeeEeec
Q 003171 321 HSR-AKVWSAG-FLSFALWDARTREL----LKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQR 394 (842)
Q Consensus 321 ~~~-~~v~s~s-~~tI~lWD~~tg~~----l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~ 394 (842)
+++ ..+++++ +++|++||+++++. +.++..+.... .
T Consensus 236 p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~---------------------------~----------- 277 (447)
T 3dw8_B 236 PNSCNTFVYSSSKGTIRLCDMRASALCDRHSKLFEEPEDPS---------------------------N----------- 277 (447)
T ss_dssp SSCTTEEEEEETTSCEEEEETTTCSSSCTTCEEECCC-------------------------------------------
T ss_pred CCCCcEEEEEeCCCeEEEEECcCCccccceeeEeccCCCcc---------------------------c-----------
Confidence 887 7788776 67899999998875 34443221100 0
Q ss_pred CcceEEecCCcEEEEeecCccccCCCceEEEEECCCCc-EEEEeCCCeEEEEcC-C-CCeeeeeecCCccE---------
Q 003171 395 SRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGM-IWTGGANGLLLQWDP-N-GNRLQDFQYLPFAV--------- 462 (842)
Q Consensus 395 ~~~~~~g~~~~v~~v~~~g~~~~~~~~v~al~~s~dg~-l~Sgs~DgtIrlWD~-~-g~~l~~l~~H~~~V--------- 462 (842)
...+.++...|.+++++|+|+ |++++. ++|++||+ . ++++.++.+|...+
T Consensus 278 -----------------~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~~ 339 (447)
T 3dw8_B 278 -----------------RSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPVETYQVHEYLRSKLCSLYEN 339 (447)
T ss_dssp -----------------CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSSCSCCEESCGGGTTTHHHHHHT
T ss_pred -----------------cccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCccccceeeccccccccccccccc
Confidence 001334556788999999998 677777 99999999 5 88999999886432
Q ss_pred --------EEEEecCCEEEEEecCcEEEEEeCCCcccccccc---------------------------------cccCE
Q 003171 463 --------QCLCTFGSQIWVGYMNGIVQVLDLEGNLLGGWVA---------------------------------HSSPV 501 (842)
Q Consensus 463 --------~sls~dG~~LasGs~DgtIrlWD~~g~~i~~l~g---------------------------------H~~~V 501 (842)
.+++++|++|++|+.||+|+|||+.+.....+.+ +...|
T Consensus 340 ~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 419 (447)
T 3dw8_B 340 DCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDITLEASRENNKPRTVLKPRKVCASGKRKKDEISVDSLDFNKKI 419 (447)
T ss_dssp SGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCCEEEEECCSTTCCTTCBCCCCCEECSSCCCTTCEEGGGCCTTSCC
T ss_pred cccccceEEEECCCCCEEEEeccCCEEEEEEcCCCcceeeeecccccccccccCCccccccCCcccccccccccccCCce
Confidence 3556789999999999999999987332223333 34567
Q ss_pred EEEE--eCCCEEEEEcCCCCeeecc
Q 003171 502 IKMA--VGAGYIFTLANHGGIRGWN 524 (842)
Q Consensus 502 ~sla--~dg~~l~S~S~DgtIrvWd 524 (842)
.+++ +++..|++++.|+ +.+|.
T Consensus 420 ~~~~~~p~~~~la~~~~~~-~~~~~ 443 (447)
T 3dw8_B 420 LHTAWHPKENIIAVATTNN-LYIFQ 443 (447)
T ss_dssp CEEEECSSSSEEEEECSSC-EEEEE
T ss_pred eEEEECCCCCEEEEEecce-eeeec
Confidence 7787 4778898888775 77776
|
| >2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A | Back alignment and structure |
|---|
Probab=99.93 E-value=2.2e-24 Score=241.71 Aligned_cols=270 Identities=14% Similarity=0.096 Sum_probs=191.3
Q ss_pred ecCCCEEEEeCCCCccccccccccccCCCCCCCCCCeeeeeecCCCeEEEEEcC-CCCEEEEEeCCCcEEEEECCCCccC
Q 003171 148 GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDE-ASGVVWSGHRDGRIMCWKMNARLLD 226 (842)
Q Consensus 148 ~~D~~vrvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~V~~la~dp-dg~~LaSGs~DGtIrlWdl~~g~~~ 226 (842)
+.|+.|+|||+.+..... .....+ ..| .++|.|++|+| ++++|++|+.||+|++|++.++..
T Consensus 54 ~~~g~i~v~~~~~~~~~~-------------~~~~~~--~~h-~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~- 116 (402)
T 2aq5_A 54 SGGGAFLVLPLGKTGRVD-------------KNVPLV--CGH-TAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGL- 116 (402)
T ss_dssp SSSCCEEEEETTCCEECC-------------TTCCCB--CCC-SSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCC-
T ss_pred cCCCEEEEEECccCCCCC-------------CCCceE--ecC-CCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCC-
Confidence 568999999996532110 001111 123 78999999999 999999999999999999987520
Q ss_pred CCCCcceeEEecccCCcEEEEEEecCC-C-EEEeeCCCcEEEEeCCCccceeecCCCceeeeEEEEeeceeecccceecc
Q 003171 227 SDDGFGEVLSWQAHRGPVLSLCISSYG-D-LWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVN 304 (842)
Q Consensus 227 ~~~~~~~~~~l~gH~~~V~slafs~dG-~-L~SgS~DgtIrvWd~~t~~~~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~ 304 (842)
..........+.+|.+.|++|+|+|+| . |++|+.|++|++||+.+++....+.. .+|
T Consensus 117 ~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~-----------------~~~---- 175 (402)
T 2aq5_A 117 VLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGP-----------------DVH---- 175 (402)
T ss_dssp SSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEECT-----------------TTC----
T ss_pred ccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEec-----------------CCC----
Confidence 000003456789999999999999998 4 78999999999999977543222200 111
Q ss_pred ceeeeecCCEEEEEEcCCCCEEEEeC-CCcEEEEEccCCcEEEEe-ecCCceEeeeecccCCCcccccceEEEEEecCCC
Q 003171 305 GFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVF-NIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKK 382 (842)
Q Consensus 305 ~~~~~~s~~v~~las~~~~~~v~s~s-~~tI~lWD~~tg~~l~~l-~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~ 382 (842)
...+.+++.++++..+++++ +++|++||+++++++..+ ..|..
T Consensus 176 ------~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~----------------------------- 220 (402)
T 2aq5_A 176 ------PDTIYSVDWSRDGALICTSCRDKRVRVIEPRKGTVVAEKDRPHEG----------------------------- 220 (402)
T ss_dssp ------CSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECSSCS-----------------------------
T ss_pred ------CCceEEEEECCCCCEEEEEecCCcEEEEeCCCCceeeeeccCCCC-----------------------------
Confidence 34678888888888888776 689999999998876554 22110
Q ss_pred CccceeeeEeecCcceEEecCCcEEEEeecCccccCCCceEEEEECCCCc-EEEE---eCCCeEEEEcC-CCCe-eeeee
Q 003171 383 DKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGM-IWTG---GANGLLLQWDP-NGNR-LQDFQ 456 (842)
Q Consensus 383 ~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~al~~s~dg~-l~Sg---s~DgtIrlWD~-~g~~-l~~l~ 456 (842)
..+..++++|++. +++| +.|+.|++||+ +++. +....
T Consensus 221 -------------------------------------~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~ 263 (402)
T 2aq5_A 221 -------------------------------------TRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQE 263 (402)
T ss_dssp -------------------------------------SSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSCSEEEE
T ss_pred -------------------------------------CcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCCceEEe
Confidence 1134567888888 5566 58999999999 4443 43333
Q ss_pred -cCCccEEEEE--ecCCEEE-EEecCcEEEEEeCC-Ccc-ccccccc--ccCEEEEEeCCCEEEEEcCCCCeeeccccC
Q 003171 457 -YLPFAVQCLC--TFGSQIW-VGYMNGIVQVLDLE-GNL-LGGWVAH--SSPVIKMAVGAGYIFTLANHGGIRGWNVTS 527 (842)
Q Consensus 457 -~H~~~V~sls--~dG~~La-sGs~DgtIrlWD~~-g~~-i~~l~gH--~~~V~sla~dg~~l~S~S~DgtIrvWd~~~ 527 (842)
.|...|.+++ ++|++|+ +|+.|++|++||+. ++. +..+..| .+.|.++++.++..+.++.|+.+++|++..
T Consensus 264 ~~~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~~~~~~~~v~~~~~sp~~~~~~s~~~~~~~~~l~~ 342 (402)
T 2aq5_A 264 LDTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAPFLHYLSMFSSKESQRGMGYMPKRGLEVNKCEIARFYKLHE 342 (402)
T ss_dssp CCCCSSCEEEEEETTTTEEEEEETTCSCEEEEEECSSTTCEEEEEEECCSSCCSEEEECCGGGSCGGGTEEEEEEEEET
T ss_pred ccCCCceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCCcceEeecccccCCcccceEEecccccceecceeEEEEEcCC
Confidence 4677788775 5788886 55579999999987 442 5566555 489999986544333446788999999865
|
| >3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A | Back alignment and structure |
|---|
Probab=99.93 E-value=1.4e-24 Score=236.21 Aligned_cols=240 Identities=12% Similarity=0.103 Sum_probs=164.8
Q ss_pred eeEEEEec--CCEEEE-ecCCCEEEEeCCCCccccccccccccCCCCCCCCCCeeeeeecCCCeEEEEEcC--CCCEEEE
Q 003171 134 FLRTIVCT--EEQLWA-GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDE--ASGVVWS 208 (842)
Q Consensus 134 ~~~~l~~~--~~~l~~-~~D~~vrvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~V~~la~dp--dg~~LaS 208 (842)
.+.+++.+ ++.|.+ +.|++|||||+.+.... + ......| ..+|.+++|++ ++++|+|
T Consensus 15 ~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~-~----------------~~~l~gH-~~~V~~v~~~~~~~~~~l~s 76 (316)
T 3bg1_A 15 MIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQI-L----------------IADLRGH-EGPVWQVAWAHPMYGNILAS 76 (316)
T ss_dssp CEEEEEECGGGCEEEEEETTTEEEEEEEETTEEE-E----------------EEEEECC-SSCEEEEEECCGGGSSCEEE
T ss_pred eEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcE-E----------------EEEEcCC-CccEEEEEeCCCCCCCEEEE
Confidence 46667665 445655 56999999998653211 0 0111234 78999999986 4899999
Q ss_pred EeCCCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecC--CC-EEEeeCCCcEEEEeCCCccceeecCCCceee
Q 003171 209 GHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSY--GD-LWSGSEGGGIKIWPWEAIEKALSLKPEERHT 285 (842)
Q Consensus 209 Gs~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~d--G~-L~SgS~DgtIrvWd~~t~~~~l~~~~~~~~~ 285 (842)
|+.|++|++||+.++. ......+.+|.++|++|+|+|+ |. |++|+.|++|++||+.+.........
T Consensus 77 ~s~D~~v~iWd~~~~~------~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~----- 145 (316)
T 3bg1_A 77 CSYDRKVIIWREENGT------WEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKI----- 145 (316)
T ss_dssp EETTSCEEEECCSSSC------CCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCB-----
T ss_pred EECCCEEEEEECCCCc------ceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeee-----
Confidence 9999999999998752 1356678899999999999998 65 89999999999999875321100000
Q ss_pred eEEEEeeceeecccceeccceeeeecCCEEEEEEcCC-----------------CCEEEEeC-CCcEEEEEccCCcEEEE
Q 003171 286 AALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHS-----------------RAKVWSAG-FLSFALWDARTRELLKV 347 (842)
Q Consensus 286 ~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~-----------------~~~v~s~s-~~tI~lWD~~tg~~l~~ 347 (842)
+.+| ...+.+++.++. +..+++++ |++|+|||+.++...+.
T Consensus 146 -----------~~~h----------~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~ 204 (316)
T 3bg1_A 146 -----------NNAH----------TIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKE 204 (316)
T ss_dssp -----------TTSS----------SSCBCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEE
T ss_pred -----------eccc----------cCCcceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCccce
Confidence 0011 011111222211 34666666 67899999864321000
Q ss_pred eecCCceEeeeecccCCCcccccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEeecCccccCCCceEEEEE
Q 003171 348 FNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTT 427 (842)
Q Consensus 348 l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~al~~ 427 (842)
+ ..+.+|...|.+++|
T Consensus 205 ~----------------------------------------------------------------~~l~~h~~~V~~v~~ 220 (316)
T 3bg1_A 205 E----------------------------------------------------------------QKLEAHSDWVRDVAW 220 (316)
T ss_dssp E----------------------------------------------------------------ECCBCCSSCEEEEEC
T ss_pred e----------------------------------------------------------------eecccCCCceEEEEe
Confidence 0 013345566788889
Q ss_pred CCCC-----cEEEEeCCCeEEEEcCCC----C-eeeeeecCCccEEEEEe--cCCEEEEEecCcEEEEEeCC
Q 003171 428 SIDG-----MIWTGGANGLLLQWDPNG----N-RLQDFQYLPFAVQCLCT--FGSQIWVGYMNGIVQVLDLE 487 (842)
Q Consensus 428 s~dg-----~l~Sgs~DgtIrlWD~~g----~-~l~~l~~H~~~V~sls~--dG~~LasGs~DgtIrlWD~~ 487 (842)
+|++ .|++|+.|++|++||+.. + ..+.+..|...|+++++ +|++|++|+.|++|+||+..
T Consensus 221 sp~~~~~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~las~~~D~~v~lw~~~ 292 (316)
T 3bg1_A 221 APSIGLPTSTIASCSQDGRVFIWTCDDASSNTWSPKLLHKFNDVVWHVSWSITANILAVSGGDNKVTLWKES 292 (316)
T ss_dssp CCCSSCSCCEEEEEETTCEEEEEECSSTTCCCCBCCEEEECSSCEEEEEECTTTCCEEEEESSSCEEEEEEC
T ss_pred cCCCCCCCceEEEEcCCCeEEEEEccCccccchhhhhhhcCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEEC
Confidence 8875 489999999999999842 1 23456789999999864 78999999999999999964
|
| >1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X | Back alignment and structure |
|---|
Probab=99.93 E-value=8.8e-24 Score=234.59 Aligned_cols=283 Identities=13% Similarity=0.116 Sum_probs=196.5
Q ss_pred eeEEEEecCCEEEE-ecCCCEEEEeCCCCccccccccccccCCCCCCCCCCeeeeeecCCCeEEEEEcCC----C---CE
Q 003171 134 FLRTIVCTEEQLWA-GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEA----S---GV 205 (842)
Q Consensus 134 ~~~~l~~~~~~l~~-~~D~~vrvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~V~~la~dpd----g---~~ 205 (842)
.+.+++...+.|++ +.|+.|++||+.+...... .........| ..+|.|++|+|+ + ++
T Consensus 18 ~i~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~-------------~~~~~~~~~h-~~~v~~~~~~~~~~~~g~~~~~ 83 (397)
T 1sq9_A 18 DIFSVSACNSFTVSCSGDGYLKVWDNKLLDNENP-------------KDKSYSHFVH-KSGLHHVDVLQAIERDAFELCL 83 (397)
T ss_dssp CEEEEEECSSEEEEEETTSEEEEEESBCCTTCCG-------------GGGEEEEECC-TTCEEEEEEEEEEETTTEEEEE
T ss_pred CeEEEEecCCeEEEEcCCCEEEEEECCCcccccC-------------CCcceEEecC-CCcEEEEEEecccccCCccccE
Confidence 56777777766665 5699999999976431100 0001111123 789999999999 9 99
Q ss_pred EEEEeCCCcEEEEECCCCccCCCCCcce-----eEEeccc-----CCcEEEEEEe----cCCC--EEEeeCCCcEEEEeC
Q 003171 206 VWSGHRDGRIMCWKMNARLLDSDDGFGE-----VLSWQAH-----RGPVLSLCIS----SYGD--LWSGSEGGGIKIWPW 269 (842)
Q Consensus 206 LaSGs~DGtIrlWdl~~g~~~~~~~~~~-----~~~l~gH-----~~~V~slafs----~dG~--L~SgS~DgtIrvWd~ 269 (842)
|++|+.||+|++|++.++ .. ...+.+| ...|++++|+ |++. |++|+.||.|++||+
T Consensus 84 l~s~~~dg~i~iw~~~~~--------~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~ 155 (397)
T 1sq9_A 84 VATTSFSGDLLFYRITRE--------DETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKF 155 (397)
T ss_dssp EEEEETTSCEEEEEEEEC--------TTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEE
T ss_pred EEEEcCCCCEEEEEccCC--------cccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeC
Confidence 999999999999999886 33 6778889 5999999999 9886 679999999999999
Q ss_pred CC------ccceeecCCCceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcCCCCEEEEeC-CCcEEEEEccCC
Q 003171 270 EA------IEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTR 342 (842)
Q Consensus 270 ~t------~~~~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s-~~tI~lWD~~tg 342 (842)
.+ .... .+.+.. . +.+... ....+...+.++++.+++ .+++++ ++.|++||++++
T Consensus 156 ~~~~~~~~~~~~-~~~~~~----~---------~~~~~~---~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~~ 217 (397)
T 1sq9_A 156 HPFADESNSLTL-NWSPTL----E---------LQGTVE---SPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTL 217 (397)
T ss_dssp ESSSSHHHHTTT-CCCCEE----E---------EEEEEC---CSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTT
T ss_pred Ccccccccccee-eccCcc----e---------eeeeec---cccCCCCCceEEEECCCc-eEEEEeCCCcEEEEECCCC
Confidence 76 3211 111000 0 000000 000013457788888888 888777 578999999999
Q ss_pred cEEEEeec---C---CceEeeeecccCCCcccccceEEEEEecCCCCccceeeeEeecCcceEEecCC---cEEEEee--
Q 003171 343 ELLKVFNI---D---GQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAAD---AVRRVAA-- 411 (842)
Q Consensus 343 ~~l~~l~~---~---~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~---~v~~v~~-- 411 (842)
+++..+.. | ......+.+++ ++...+++..+ +..+++.
T Consensus 218 ~~~~~~~~~~~h~~~~~~i~~i~~~~-------------------------------~~~~l~~~~~d~~~g~i~i~d~~ 266 (397)
T 1sq9_A 218 RPLYNFESQHSMINNSNSIRSVKFSP-------------------------------QGSLLAIAHDSNSFGCITLYETE 266 (397)
T ss_dssp EEEEEEECCC---CCCCCEEEEEECS-------------------------------STTEEEEEEEETTEEEEEEEETT
T ss_pred ceeEEEeccccccccCCccceEEECC-------------------------------CCCEEEEEecCCCCceEEEEECC
Confidence 99888876 4 43333333333 22233333333 3333332
Q ss_pred c----Ccccc-------------CCCceEEEEECCCCc-EEEEeCCCeEEEEcC-CCCeeeeee------cC--------
Q 003171 412 K----GGFGD-------------DNRRTEALTTSIDGM-IWTGGANGLLLQWDP-NGNRLQDFQ------YL-------- 458 (842)
Q Consensus 412 ~----g~~~~-------------~~~~v~al~~s~dg~-l~Sgs~DgtIrlWD~-~g~~l~~l~------~H-------- 458 (842)
. ..+.. |...|.+++++|++. |++|+.||.|++||+ +++++.++. +|
T Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~g~ 346 (397)
T 1sq9_A 267 FGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVD 346 (397)
T ss_dssp TCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBC
T ss_pred CCcccceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCCCceeEEEecccCcccchhhhhccc
Confidence 1 12223 678899999999987 889999999999999 789999999 88
Q ss_pred -------CccEEEEEe--cC----------CEEEEEecCcEEEEEeCC
Q 003171 459 -------PFAVQCLCT--FG----------SQIWVGYMNGIVQVLDLE 487 (842)
Q Consensus 459 -------~~~V~sls~--dG----------~~LasGs~DgtIrlWD~~ 487 (842)
...|+++++ +| ++|++|+.||.|++||++
T Consensus 347 ~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~~~ 394 (397)
T 1sq9_A 347 EHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFREA 394 (397)
T ss_dssp TTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEEEE
T ss_pred cccccccCCceeEEEeccccccccccccccceEEEecCCCcEEEEEcC
Confidence 999998864 67 699999999999999986
|
| >3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.93 E-value=3.9e-24 Score=232.93 Aligned_cols=238 Identities=18% Similarity=0.211 Sum_probs=174.6
Q ss_pred CCCeEEEEEcCCCC-EEEEEeC---CCcEEEEECCCCccCCCCCccee-EEecccCCcEEEEEEecC---CC-EEEeeCC
Q 003171 191 VSSVMCMVGDEASG-VVWSGHR---DGRIMCWKMNARLLDSDDGFGEV-LSWQAHRGPVLSLCISSY---GD-LWSGSEG 261 (842)
Q Consensus 191 ~~~V~~la~dpdg~-~LaSGs~---DGtIrlWdl~~g~~~~~~~~~~~-~~l~gH~~~V~slafs~d---G~-L~SgS~D 261 (842)
..+|.|++|+|++. ++++|+. ||+|++|++.++ +.. ....+|.++|++++|+|+ |. |++|+.|
T Consensus 18 ~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~--------~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~d 89 (357)
T 3i2n_A 18 NYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHG--------DLKLLREIEKAKPIKCGTFGATSLQQRYLATGDFG 89 (357)
T ss_dssp SSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSS--------SEEEEEEEEESSCEEEEECTTCCTTTCCEEEEETT
T ss_pred CCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCC--------cccceeeecccCcEEEEEEcCCCCCCceEEEecCC
Confidence 78999999999985 6667777 999999999986 332 233489999999999998 45 8999999
Q ss_pred CcEEEEeCCCcc-ceeecCCCceeeeEEEEeeceeecccceeccceeeeecCCEEEEE------EcCCCCEEEEeC-CCc
Q 003171 262 GGIKIWPWEAIE-KALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLL------SDHSRAKVWSAG-FLS 333 (842)
Q Consensus 262 gtIrvWd~~t~~-~~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~la------s~~~~~~v~s~s-~~t 333 (842)
|+|++||+.+.. ....+.. | ...+.++. +++++..+++++ +++
T Consensus 90 g~i~iwd~~~~~~~~~~~~~-------------------~----------~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~ 140 (357)
T 3i2n_A 90 GNLHIWNLEAPEMPVYSVKG-------------------H----------KEIINAIDGIGGLGIGEGAPEIVTGSRDGT 140 (357)
T ss_dssp SCEEEECTTSCSSCSEEECC-------------------C----------SSCEEEEEEESGGGCC-CCCEEEEEETTSC
T ss_pred CeEEEEeCCCCCccEEEEEe-------------------c----------ccceEEEeeccccccCCCccEEEEEeCCCe
Confidence 999999997754 2222211 1 23344443 345666777766 679
Q ss_pred EEEEEccCCc-EEEEeecCCceEeeeecccCCCcccccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEeec
Q 003171 334 FALWDARTRE-LLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAK 412 (842)
Q Consensus 334 I~lWD~~tg~-~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~ 412 (842)
|++||+.+++ ++..+..+..
T Consensus 141 i~vwd~~~~~~~~~~~~~~~~----------------------------------------------------------- 161 (357)
T 3i2n_A 141 VKVWDPRQKDDPVANMEPVQG----------------------------------------------------------- 161 (357)
T ss_dssp EEEECTTSCSSCSEEECCCTT-----------------------------------------------------------
T ss_pred EEEEeCCCCCCcceeccccCC-----------------------------------------------------------
Confidence 9999998875 3333322110
Q ss_pred CccccCCCceEEEE----ECCCCc-EEEEeCCCeEEEEcCC-CCeeeeeecCCccEEEEEe-----cCCEEEEEecCcEE
Q 003171 413 GGFGDDNRRTEALT----TSIDGM-IWTGGANGLLLQWDPN-GNRLQDFQYLPFAVQCLCT-----FGSQIWVGYMNGIV 481 (842)
Q Consensus 413 g~~~~~~~~v~al~----~s~dg~-l~Sgs~DgtIrlWD~~-g~~l~~l~~H~~~V~sls~-----dG~~LasGs~DgtI 481 (842)
.....+.+++ +++++. +++|+.||.|++||+. +++ .....|...|.++++ ++.+|++|+.||.|
T Consensus 162 ----~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~-~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i 236 (357)
T 3i2n_A 162 ----ENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMAL-RWETNIKNGVCSLEFDRKDISMNKLVATSLEGKF 236 (357)
T ss_dssp ----SCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEE-EEEEECSSCEEEEEESCSSSSCCEEEEEESTTEE
T ss_pred ----CCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCce-eeecCCCCceEEEEcCCCCCCCCEEEEECCCCeE
Confidence 0011233344 667776 7899999999999994 554 445678999999865 67899999999999
Q ss_pred EEEeCC-Cccccccc-----ccccCEEEEEe--CCC-EEEEEcCCCCeeeccccCCC
Q 003171 482 QVLDLE-GNLLGGWV-----AHSSPVIKMAV--GAG-YIFTLANHGGIRGWNVTSPG 529 (842)
Q Consensus 482 rlWD~~-g~~i~~l~-----gH~~~V~sla~--dg~-~l~S~S~DgtIrvWd~~~~~ 529 (842)
++||++ ++++..+. +|...|+++++ +++ ++++++.|+.|++||+....
T Consensus 237 ~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 293 (357)
T 3i2n_A 237 HVFDMRTQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPI 293 (357)
T ss_dssp EEEEEEEEETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCS
T ss_pred EEEeCcCCCcccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCc
Confidence 999987 55555554 99999999985 555 79999999999999987644
|
| >3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* | Back alignment and structure |
|---|
Probab=99.93 E-value=1.8e-23 Score=232.00 Aligned_cols=265 Identities=8% Similarity=0.045 Sum_probs=183.3
Q ss_pred ceeEEEEecC---CEEEE-ecCCCEEEEeCCCCccccccccccccCCCCCCCCCCeeeeeecCCCeEEEEEcC-CCCEEE
Q 003171 133 CFLRTIVCTE---EQLWA-GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDE-ASGVVW 207 (842)
Q Consensus 133 ~~~~~l~~~~---~~l~~-~~D~~vrvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~V~~la~dp-dg~~La 207 (842)
..+.+++... +.|.+ +.|+.|+|||+.+...... +....| ..+|.+++|+| ++++|+
T Consensus 74 ~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~-----------------~~~~~h-~~~v~~~~~~~~~~~~l~ 135 (383)
T 3ei3_B 74 RRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSF-----------------IQGMGP-GDAITGMKFNQFNTNQLF 135 (383)
T ss_dssp SCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEE-----------------ECCCST-TCBEEEEEEETTEEEEEE
T ss_pred CCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCccccee-----------------eecCCc-CCceeEEEeCCCCCCEEE
Confidence 3466666653 34554 5689999999976432210 111123 77999999999 789999
Q ss_pred EEeCCCcEEEEECCCCccCCCCCcceeEEecc---cCCcEEEEEEecCCC-EEEeeCCCcEEEEeCCCccceeecCCCce
Q 003171 208 SGHRDGRIMCWKMNARLLDSDDGFGEVLSWQA---HRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEKALSLKPEER 283 (842)
Q Consensus 208 SGs~DGtIrlWdl~~g~~~~~~~~~~~~~l~g---H~~~V~slafs~dG~-L~SgS~DgtIrvWd~~t~~~~l~~~~~~~ 283 (842)
+|+.||+|++||+.+ .....+.+ |...|++++|+|+++ |++|+.|++|++||+.. +....+
T Consensus 136 s~~~d~~i~iwd~~~---------~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~-~~~~~~----- 200 (383)
T 3ei3_B 136 VSSIRGATTLRDFSG---------SVIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGLDG-HEIFKE----- 200 (383)
T ss_dssp EEETTTEEEEEETTS---------CEEEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEETTS-CEEEEE-----
T ss_pred EEeCCCEEEEEECCC---------CceEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEECCC-CEEEEe-----
Confidence 999999999999986 34555544 458999999999998 78999999999999842 211111
Q ss_pred eeeEEEEeeceeecccceeccceeeeecCCEEEEEEcCCCC-EEEEeC-CCcEEEEEccC----CcEEEEeecCCceEee
Q 003171 284 HTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRA-KVWSAG-FLSFALWDART----RELLKVFNIDGQIENR 357 (842)
Q Consensus 284 ~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~-~v~s~s-~~tI~lWD~~t----g~~l~~l~~~~~~~~~ 357 (842)
.+| ...+.++++++++. .+++++ +++|++||+.+ +.++..+. +......
T Consensus 201 --------------~~h----------~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~-~~~~v~~ 255 (383)
T 3ei3_B 201 --------------KLH----------KAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEMP-HEKPVNA 255 (383)
T ss_dssp --------------ECS----------SSCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEEE-CSSCEEE
T ss_pred --------------ccC----------CCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCcccceEEEec-CCCceEE
Confidence 112 45678888888887 777776 67999999998 77777763 4433344
Q ss_pred eeccc-CCCcccccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEeec--C----ccc--------------
Q 003171 358 VDMSL-LPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAK--G----GFG-------------- 416 (842)
Q Consensus 358 ~~~s~-~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~--g----~~~-------------- 416 (842)
+.+++ .. ...+++..++..+++.. + .+.
T Consensus 256 ~~~s~~~~-------------------------------~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (383)
T 3ei3_B 256 AYFNPTDS-------------------------------TKLLTTDQRNEIRVYSSYDWSKPDQIIIHPHRQFQHLTPIK 304 (383)
T ss_dssp EEECTTTS-------------------------------CEEEEEESSSEEEEEETTBTTSCSEEEECCBCCCTTSCCCC
T ss_pred EEEcCCCC-------------------------------CEEEEEcCCCcEEEEECCCCccccccccccccccccccceE
Confidence 44444 22 22223333333332220 0 000
Q ss_pred ---cCCCceEEEEECCCCcEEEEeCCCeEEEEcC-CCCeeeeeec--CCccEEEE--EecCCEEEEEecCcEEEEEeCCC
Q 003171 417 ---DDNRRTEALTTSIDGMIWTGGANGLLLQWDP-NGNRLQDFQY--LPFAVQCL--CTFGSQIWVGYMNGIVQVLDLEG 488 (842)
Q Consensus 417 ---~~~~~v~al~~s~dg~l~Sgs~DgtIrlWD~-~g~~l~~l~~--H~~~V~sl--s~dG~~LasGs~DgtIrlWD~~g 488 (842)
.....+.+++++|||++ +|+.|++|++||+ +++++.++.+ |...+.++ +++|++|++|+ |++|+|||+++
T Consensus 305 ~~~~p~~~~~~~~~s~dg~~-s~s~d~~i~iwd~~~~~~~~~l~~~~~~~~~~~~~~s~~g~~l~s~s-d~~i~iw~~~~ 382 (383)
T 3ei3_B 305 ATWHPMYDLIVAGRYPDDQL-LLNDKRTIDIYDANSGGLVHQLRDPNAAGIISLNKFSPTGDVLASGM-GFNILIWNRED 382 (383)
T ss_dssp CEECSSSSEEEEECBCCTTT-CTTCCCCEEEEETTTCCEEEEECBTTBCSCCCEEEECTTSSEEEEEE-TTEEEEEECC-
T ss_pred EeccCCCCceEEEecCCccc-ccCCCCeEEEEecCCCceeeeecCCCCCceEEEEEEecCccEEEEec-CCcEEEEecCC
Confidence 11234556888999988 9999999999999 7999999987 45666664 45899999997 99999999863
|
| >3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.92 E-value=1.3e-24 Score=264.94 Aligned_cols=238 Identities=12% Similarity=0.060 Sum_probs=184.1
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecC--CC-EEEeeCCCcEEEE
Q 003171 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSY--GD-LWSGSEGGGIKIW 267 (842)
Q Consensus 191 ~~~V~~la~dpdg~~LaSGs~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~d--G~-L~SgS~DgtIrvW 267 (842)
.++|.|++|+|++++|++|+.||+|++||+.++. ......+.+|.++|++|+|+|+ |. |+||+.||+|++|
T Consensus 9 ~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~------~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vw 82 (753)
T 3jro_A 9 NELIHDAVLDYYGKRLATCSSDKTIKIFEVEGET------HKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIW 82 (753)
T ss_dssp CCCEEEECCCSSSCCEEEEETTTEEEEEEEETTE------EEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEEE
T ss_pred cceeEEEEECCCCCeEEEEECCCcEEEEecCCCC------CccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEEE
Confidence 7899999999999999999999999999997431 1566788999999999999988 76 7899999999999
Q ss_pred eCCCccceeecCCCceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcCC--CCEEEEeC-CCcEEEEEccCCcE
Q 003171 268 PWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHS--RAKVWSAG-FLSFALWDARTREL 344 (842)
Q Consensus 268 d~~t~~~~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~--~~~v~s~s-~~tI~lWD~~tg~~ 344 (842)
|+.++..... . .+.+| ...+.+++++++ +..+++++ +++|++||+.++..
T Consensus 83 d~~~~~~~~~--------~---------~~~~h----------~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~ 135 (753)
T 3jro_A 83 KEENGRWSQI--------A---------VHAVH----------SASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGT 135 (753)
T ss_dssp EEETTEEEEE--------E---------EECCC----------SSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSC
T ss_pred ECCCCccccc--------c---------cccCC----------CCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCC
Confidence 9866431100 0 01111 456888888887 77888776 67999999987632
Q ss_pred E--EEeecCCceEeeeecccCCCcccccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEeecCccccCCCce
Q 003171 345 L--KVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRT 422 (842)
Q Consensus 345 l--~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v 422 (842)
. ..+. .|...|
T Consensus 136 ~~~~~~~-------------------------------------------------------------------~~~~~v 148 (753)
T 3jro_A 136 TSPIIID-------------------------------------------------------------------AHAIGV 148 (753)
T ss_dssp CCCEEEE-------------------------------------------------------------------CCSSCE
T ss_pred cceeEee-------------------------------------------------------------------cCCCce
Confidence 1 1111 112223
Q ss_pred EEEEECC-------------CCc-EEEEeCCCeEEEEcC-CC----CeeeeeecCCccEEEEEe--c---CCEEEEEecC
Q 003171 423 EALTTSI-------------DGM-IWTGGANGLLLQWDP-NG----NRLQDFQYLPFAVQCLCT--F---GSQIWVGYMN 478 (842)
Q Consensus 423 ~al~~s~-------------dg~-l~Sgs~DgtIrlWD~-~g----~~l~~l~~H~~~V~sls~--d---G~~LasGs~D 478 (842)
.+++++| ++. +++|+.||+|++||+ .+ .++.++.+|..+|+++++ + |++|++|+.|
T Consensus 149 ~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~D 228 (753)
T 3jro_A 149 NSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQD 228 (753)
T ss_dssp EEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEESS
T ss_pred EEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCCEEEEEecC
Confidence 3344444 444 899999999999999 55 566788899999999864 5 7899999999
Q ss_pred cEEEEEeCCC-c-----ccccccccccCEEEEE--eCCCEEEEEcCCCCeeeccccCC
Q 003171 479 GIVQVLDLEG-N-----LLGGWVAHSSPVIKMA--VGAGYIFTLANHGGIRGWNVTSP 528 (842)
Q Consensus 479 gtIrlWD~~g-~-----~i~~l~gH~~~V~sla--~dg~~l~S~S~DgtIrvWd~~~~ 528 (842)
|+|++||+.. + .+....+|.+.|++++ ++++++++++.||.|++|++...
T Consensus 229 g~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~~~~ 286 (753)
T 3jro_A 229 RTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLE 286 (753)
T ss_dssp SCEEEEEESSSSSCCBCCBSSSSCCSSCCCCEEECTTTCCEEEECSSSCEECCBCCSS
T ss_pred CEEEEecCCCCCCcceeEEeccCCCCCceEEEEEcCCCCEEEEEcCCCEEEEEecCCC
Confidence 9999999863 2 3455667999999988 47889999999999999998753
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=99.92 E-value=1.7e-23 Score=255.05 Aligned_cols=304 Identities=14% Similarity=0.155 Sum_probs=213.2
Q ss_pred eeEEEEec--CCEEEE-ecCCCEEEEeCCCCccccccccccccCCCCCCCCCCeeeeeecCCCeEEEEEcCCCCEEEEEe
Q 003171 134 FLRTIVCT--EEQLWA-GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGH 210 (842)
Q Consensus 134 ~~~~l~~~--~~~l~~-~~D~~vrvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~V~~la~dpdg~~LaSGs 210 (842)
.+.+++.+ +..|.+ +.|+.|+|||+.+...... + ..| .++|.|++|+|++++|++|+
T Consensus 15 ~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~~~~-----------------~--~~~-~~~v~~~~~s~~~~~l~~~~ 74 (814)
T 3mkq_A 15 RVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVRS-----------------I--QVT-ETPVRAGKFIARKNWIIVGS 74 (814)
T ss_dssp CEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEE-----------------E--ECC-SSCEEEEEEEGGGTEEEEEE
T ss_pred ceEEEEECCCCCEEEEEeCCCEEEEEECCCCceEEE-----------------E--ecC-CCcEEEEEEeCCCCEEEEEe
Confidence 35566655 334554 4588999999976433211 1 123 78999999999999999999
Q ss_pred CCCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCCC-EEEeeCCCcEEEEeCCCccceeecCCCceeeeEEE
Q 003171 211 RDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALI 289 (842)
Q Consensus 211 ~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~~t~~~~l~~~~~~~~~~~l~ 289 (842)
.||+|++||+.++ +....+.+|.+.|++++|+|+|. |++|+.||+|++||+.+.......
T Consensus 75 ~dg~i~vw~~~~~--------~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~----------- 135 (814)
T 3mkq_A 75 DDFRIRVFNYNTG--------EKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQT----------- 135 (814)
T ss_dssp TTSEEEEEETTTC--------CEEEEEECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEEE-----------
T ss_pred CCCeEEEEECCCC--------cEEEEEecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceEEEE-----------
Confidence 9999999999987 67788999999999999999997 789999999999999664211100
Q ss_pred EeeceeecccceeccceeeeecCCEEEEEEcC-CCCEEEEeC-CCcEEEEEccCCcEEEEeecCC-ceEeeeecccCCCc
Q 003171 290 VERSYIDLRSHLSVNGFSSILTSDIKNLLSDH-SRAKVWSAG-FLSFALWDARTRELLKVFNIDG-QIENRVDMSLLPDF 366 (842)
Q Consensus 290 ~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~-~~~~v~s~s-~~tI~lWD~~tg~~l~~l~~~~-~~~~~~~~s~~~~~ 366 (842)
+.+| ...+.++++++ ++..+++++ +++|++||+.+++....+..+. ....
T Consensus 136 -------~~~~----------~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~v~---------- 188 (814)
T 3mkq_A 136 -------FEGH----------EHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVN---------- 188 (814)
T ss_dssp -------EECC----------SSCEEEEEEETTEEEEEEEEETTSEEEEEETTCSSCSEEEECCCTTCCC----------
T ss_pred -------EcCC----------CCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcceeEEecCCCCCEE----------
Confidence 0111 34577788877 566677666 6899999998877655554321 1111
Q ss_pred ccccceEEEEEecCCCCccceeeeEee--cCcceEEecCCcEEEEee--cC----ccccCCCceEEEEECCCCc-EEEEe
Q 003171 367 AMEDEFKTKIVTSSKKDKAQSSFGFFQ--RSRNAIMGAADAVRRVAA--KG----GFGDDNRRTEALTTSIDGM-IWTGG 437 (842)
Q Consensus 367 ~~~~~~~~~~~s~~~~~~~~~s~~~~~--~~~~~~~g~~~~v~~v~~--~g----~~~~~~~~v~al~~s~dg~-l~Sgs 437 (842)
.+.+.+ ++...+++..++..+++. .+ .+..|...|.+++++|+|. +++|+
T Consensus 189 ---------------------~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 247 (814)
T 3mkq_A 189 ---------------------YVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGS 247 (814)
T ss_dssp ---------------------EEEECCSTTCCEEEEECTTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSEEEEEE
T ss_pred ---------------------EEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEe
Confidence 122333 334455666666555554 11 2345777889999999987 78999
Q ss_pred CCCeEEEEcC-CCCeeeeeecCCccEEEEEe--cCC--EEEEEecCcEEEEEeCCC-c----------cc----------
Q 003171 438 ANGLLLQWDP-NGNRLQDFQYLPFAVQCLCT--FGS--QIWVGYMNGIVQVLDLEG-N----------LL---------- 491 (842)
Q Consensus 438 ~DgtIrlWD~-~g~~l~~l~~H~~~V~sls~--dG~--~LasGs~DgtIrlWD~~g-~----------~i---------- 491 (842)
.||+|++||+ +++++.++..|...|.+++. +|+ ++++| .++.+.+|++.. . .+
T Consensus 248 ~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 326 (814)
T 3mkq_A 248 EDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASG-FDNGFTVLSLGNDEPTLSLDPVGKLVWSGGKNAAAS 326 (814)
T ss_dssp TTSCEEEEETTTCSEEEEECCSSSSEEEEEECTTCGGGEEEEE-ETTEEEEEECSCCSCCEEECSSSEEEEECCTTSCTT
T ss_pred CCCeEEEEECCCCcEEEEeecCCCcEEEEEEccCCCceEEEEE-eCCCEEEEEcCCCCceeEECCCCCEEEECcccccce
Confidence 9999999999 68888999999999998865 555 35554 466788887531 1 11
Q ss_pred -----------------------ccccccccCEEEEE--eCCCEEEEEcCCCCeeecccc
Q 003171 492 -----------------------GGWVAHSSPVIKMA--VGAGYIFTLANHGGIRGWNVT 526 (842)
Q Consensus 492 -----------------------~~l~gH~~~V~sla--~dg~~l~S~S~DgtIrvWd~~ 526 (842)
..+..|...|.+++ ++|+++++++ |+.+++|++.
T Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~-~~~~~i~~~~ 385 (814)
T 3mkq_A 327 DIFTAVIRGNEEVEQDEPLSLQTKELGSVDVFPQSLAHSPNGRFVTVVG-DGEYVIYTAL 385 (814)
T ss_dssp CEEEEECCSCCCCCSSSCBCCCCEEECCCSSCCSEEEECTTSSEEEEEE-TTEEEEEETT
T ss_pred eeeeeecccccccccCccceeeeecCCCCccCCceeEECCCCCEEEEec-CCEEEEEECc
Confidence 11123444566666 4777888777 8888898864
|
| >3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.92 E-value=7.1e-23 Score=223.32 Aligned_cols=277 Identities=13% Similarity=0.106 Sum_probs=198.6
Q ss_pred eeEEEEec--CCEEEE-ecCCCEEEEeCCCCccccccccccccCCCCCCCCCCeeeeeecCCCeEEEEEcCCCCEEEEEe
Q 003171 134 FLRTIVCT--EEQLWA-GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGH 210 (842)
Q Consensus 134 ~~~~l~~~--~~~l~~-~~D~~vrvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~V~~la~dpdg~~LaSGs 210 (842)
.+.+++.. ++.|++ +.|+.|++||+.+...... + ..| ..+|.+++|+|++++|++|+
T Consensus 34 ~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~-----------------~--~~h-~~~v~~~~~~~~~~~l~s~~ 93 (369)
T 3zwl_B 34 PLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGT-----------------L--DGH-TGTIWSIDVDCFTKYCVTGS 93 (369)
T ss_dssp CEEEEEECTTSCEEEEEESSSCEEEEETTTCCEEEE-----------------E--CCC-SSCEEEEEECTTSSEEEEEE
T ss_pred eEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchhhhh-----------------h--hhc-CCcEEEEEEcCCCCEEEEEe
Confidence 46666665 345555 4689999999976433211 1 123 77999999999999999999
Q ss_pred CCCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCCC-EEEeeCC-----CcEEEEeCCCccceeecCCC-ce
Q 003171 211 RDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEG-----GGIKIWPWEAIEKALSLKPE-ER 283 (842)
Q Consensus 211 ~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~D-----gtIrvWd~~t~~~~l~~~~~-~~ 283 (842)
.||+|++||+.++ +....+. |...|.+++|+|+|+ |++++.+ +.|++||+.+.......... ..
T Consensus 94 ~dg~i~iwd~~~~--------~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~ 164 (369)
T 3zwl_B 94 ADYSIKLWDVSNG--------QCVATWK-SPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEE 164 (369)
T ss_dssp TTTEEEEEETTTC--------CEEEEEE-CSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSS
T ss_pred CCCeEEEEECCCC--------cEEEEee-cCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccc
Confidence 9999999999987 5566666 889999999999998 7788888 99999999664321111000 00
Q ss_pred eeeEEEEeeceeecccceeccceeeeecCCEEEEEEcCCCCEEEEeC-CCcEEEEEccC-CcEEEEeecCCceEeeeecc
Q 003171 284 HTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDART-RELLKVFNIDGQIENRVDMS 361 (842)
Q Consensus 284 ~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s-~~tI~lWD~~t-g~~l~~l~~~~~~~~~~~~s 361 (842)
... .+..+. ....+.+++.++++..+++++ ++.|++||+.+ ++.+..+..+......+
T Consensus 165 ~~~---------~~~~~~--------~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~--- 224 (369)
T 3zwl_B 165 PIH---------KIITHE--------GLDAATVAGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDM--- 224 (369)
T ss_dssp CSE---------EEECCT--------TCCCEEEEEECGGGCEEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEE---
T ss_pred eee---------eccCCc--------CccceeEEEEcCCCCEEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEE---
Confidence 000 000010 012678888888888888776 57899999999 67777776654433333
Q ss_pred cCCCcccccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEee--cCcc---ccCCCceEEEEECCCCc-EEE
Q 003171 362 LLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAA--KGGF---GDDNRRTEALTTSIDGM-IWT 435 (842)
Q Consensus 362 ~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~--~g~~---~~~~~~v~al~~s~dg~-l~S 435 (842)
.|.+++...+++..++..+++. .+.. ..+...+..++++|++. +++
T Consensus 225 ----------------------------~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 276 (369)
T 3zwl_B 225 ----------------------------QFSPDLTYFITSSRDTNSFLVDVSTLQVLKKYETDCPLNTAVITPLKEFIIL 276 (369)
T ss_dssp ----------------------------EECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECSSSSEEEE
T ss_pred ----------------------------EECCCCCEEEEecCCceEEEEECCCCceeeeecCCCCceeEEecCCCceEEE
Confidence 3333344445555555555554 1111 12556788999999998 788
Q ss_pred EeCCC--------------eEEEEcC-CCCeeeeeecCCccEEEEEe--cCCEEEEEecCcEEEEEeCC
Q 003171 436 GGANG--------------LLLQWDP-NGNRLQDFQYLPFAVQCLCT--FGSQIWVGYMNGIVQVLDLE 487 (842)
Q Consensus 436 gs~Dg--------------tIrlWD~-~g~~l~~l~~H~~~V~sls~--dG~~LasGs~DgtIrlWD~~ 487 (842)
++.++ .|++||. +++++..+.+|...|+++++ +|++|++|+.||+|+|||++
T Consensus 277 ~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~ 345 (369)
T 3zwl_B 277 GGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQGHFGPLNTVAISPQGTSYASGGEDGFIRLHHFE 345 (369)
T ss_dssp EECCC-------------CEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEEEC
T ss_pred eecCCCceEEEEecCCCcceeEEEecCCCcchhheecccCcEEEEEECCCCCEEEEEcCCCeEEEEECc
Confidence 88887 8999999 78999999999999999865 78999999999999999987
|
| >2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A | Back alignment and structure |
|---|
Probab=99.92 E-value=5.9e-24 Score=231.63 Aligned_cols=253 Identities=10% Similarity=0.027 Sum_probs=157.4
Q ss_pred EEEEEeCCCcEEEEECCCCccCCCCCcceeEEecccCC-------------------------cEEEEEEecC----CC-
Q 003171 205 VVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRG-------------------------PVLSLCISSY----GD- 254 (842)
Q Consensus 205 ~LaSGs~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~-------------------------~V~slafs~d----G~- 254 (842)
-|++++. .+|++|+...+ ...+.+++|.+|+. .|++|+|+|| ++
T Consensus 56 ~~~~~~~-~~v~lw~~~~~-----~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~sla~spd~~~~~~~ 129 (356)
T 2w18_A 56 CIITACE-DVVSLWKALDA-----WQWEKLYTWHFAEVPVLQIVPVPDVYNLVCVALGNLEIREIRALFCSSDDESEKQV 129 (356)
T ss_dssp EEEEEES-SEEEEEEESSS-----SBEEEEEEEECCSSCEEEECCCTTCCSCEEEEECSSSEEEEEEECC------CCEE
T ss_pred EEEEecc-ceEEEcccCCC-----ccceeeEEEeccCceeEEEEEcCcccceeeeeeccccccceEEEEECCCccccccE
Confidence 4666665 58999998875 22346677887775 4556666777 55
Q ss_pred EEEeeCCCcEEEEeCCCccceee-cCCCceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcC---CCCEEEEeC
Q 003171 255 LWSGSEGGGIKIWPWEAIEKALS-LKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDH---SRAKVWSAG 330 (842)
Q Consensus 255 L~SgS~DgtIrvWd~~t~~~~l~-~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~---~~~~v~s~s 330 (842)
+++++. ++++|++.+++...+ ...+...+..+.+.... ........+...+..+++++ ++..+++++
T Consensus 130 l~s~g~--~~~v~~l~~g~lv~ss~~g~d~~V~~~~~s~dG-------~~~~s~~~~~~~v~~l~fs~~~g~~~~LaSgS 200 (356)
T 2w18_A 130 LLKSGN--IKAVLGLTKRRLVSSSGTLSDQQVEVMTFAEDG-------GGKENQFLMPPEETILTFAEVQGMQEALLGTT 200 (356)
T ss_dssp EEEEEE--EEEEEEETTTEEEEEESSSTTCEEEEEEECTTS-------CEEEEEEECCCSSCEEEEEEEETSTTEEEEEE
T ss_pred EEeCCC--eEEEEecCCCcEEEecccCCCCcEEEEEECCCC-------ceeeeeccCCCceeeEEeeccCCCCceEEEec
Confidence 567664 478888865443222 12233333333221100 00001112244555666555 667888876
Q ss_pred -CCcEEEEEccCCcEEEEeecCCceEeeeecccCCCcccccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEE
Q 003171 331 -FLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRV 409 (842)
Q Consensus 331 -~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v 409 (842)
|++|+|||++||+++++|.++..... ....+.|++++.....+..
T Consensus 201 ~D~TIkIWDl~TGk~l~tL~g~~~~v~----------------------------~v~~vafSpdG~~lvs~s~------ 246 (356)
T 2w18_A 201 IMNNIVIWNLKTGQLLKKMHIDDSYQA----------------------------SVCHKAYSEMGLLFIVLSH------ 246 (356)
T ss_dssp TTSEEEEEETTTCCEEEEEECCC---C----------------------------CCEEEEEEETTEEEEEEC-------
T ss_pred CCCcEEEEECCCCcEEEEEcCCCccee----------------------------eeEEEEECCCCCEEEEecc------
Confidence 68999999999999999875432100 0001233333221111110
Q ss_pred eecCccccCCCceEEEEECCCC--cEEEEeCCCeEEEEcC-CCCeeeee-----ecCCccEEEEEecCCEEEEEecCcEE
Q 003171 410 AAKGGFGDDNRRTEALTTSIDG--MIWTGGANGLLLQWDP-NGNRLQDF-----QYLPFAVQCLCTFGSQIWVGYMNGIV 481 (842)
Q Consensus 410 ~~~g~~~~~~~~v~al~~s~dg--~l~Sgs~DgtIrlWD~-~g~~l~~l-----~~H~~~V~sls~dG~~LasGs~DgtI 481 (842)
+++ .++||+.|++|++||. +|+++.++ .+|...+.+...+|..+++|+.|++|
T Consensus 247 -------------------~~~~w~laSGs~D~tIklWd~~tgk~l~v~~~~~p~Gh~~~~lsg~~sg~~lASgS~DgTI 307 (356)
T 2w18_A 247 -------------------PCAKESESLRSPVFQLIVINPKTTLSVGVMLYCLPPGQAGRFLEGDVKDHCAAAILTSGTI 307 (356)
T ss_dssp ------------------------------CCEEEEEEETTTTEEEEEEEECCCTTCCCCEEEEEEETTEEEEEETTSCE
T ss_pred -------------------CCCcceeeccCCCcEEEEEECCCCEEEEEEEeeccCCCcceeEccccCCCEEEEEcCCCcE
Confidence 111 2689999999999999 78887776 47877777777789999999999999
Q ss_pred EEEeCC-CcccccccccccCEE-EEE--eCCCEEEEEcCCCCeeeccc
Q 003171 482 QVLDLE-GNLLGGWVAHSSPVI-KMA--VGAGYIFTLANHGGIRGWNV 525 (842)
Q Consensus 482 rlWD~~-g~~i~~l~gH~~~V~-sla--~dg~~l~S~S~DgtIrvWd~ 525 (842)
+|||++ |++++++.+|.+.|. +++ +||++|+|||.|++||+||+
T Consensus 308 kIWDl~tGk~l~tL~gH~~~vvs~vafSPDG~~LaSGS~D~TIklWd~ 355 (356)
T 2w18_A 308 AIWDLLLGQCTALLPPVSDQHWSFVKWSGTDSHLLAGQKDGNIFVYHY 355 (356)
T ss_dssp EEEETTTCSEEEEECCC--CCCCEEEECSSSSEEEEECTTSCEEEEEE
T ss_pred EEEECCCCcEEEEecCCCCCeEEEEEECCCCCEEEEEECCCcEEEecC
Confidence 999997 889999999998765 465 58899999999999999985
|
| >3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.92 E-value=1.3e-22 Score=216.73 Aligned_cols=266 Identities=17% Similarity=0.253 Sum_probs=188.7
Q ss_pred eeEEEEe-cCCEEEE-ecCCCEEEEeCCCCccccccccccccCCCCCCCCCCeeeeeecCCCeEEEEEcCCCCEEEEEeC
Q 003171 134 FLRTIVC-TEEQLWA-GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGHR 211 (842)
Q Consensus 134 ~~~~l~~-~~~~l~~-~~D~~vrvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~V~~la~dpdg~~LaSGs~ 211 (842)
.+.+++. +++.|.+ +.|+.|++||+.+..... ....+ ..+|.+++++|++++|++|+.
T Consensus 20 ~v~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~~~-------------------~~~~~-~~~v~~~~~~~~~~~l~~~~~ 79 (313)
T 3odt_A 20 DVRDVVAVDDSKVASVSRDGTVRLWSKDDQWLGT-------------------VVYTG-QGFLNSVCYDSEKELLLFGGK 79 (313)
T ss_dssp CEEEEEEEETTEEEEEETTSEEEEEEESSSEEEE-------------------EEEEC-SSCEEEEEEETTTTEEEEEET
T ss_pred CcEEEEecCCCEEEEEEcCCcEEEEECCCCEEEE-------------------EeecC-CccEEEEEECCCCCEEEEecC
Confidence 4555554 3446665 568999999986543221 11223 779999999999999999999
Q ss_pred CCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCCCEEEeeCCCcEEEEeCCCccceeecCCCceeeeEEEEe
Q 003171 212 DGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGDLWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVE 291 (842)
Q Consensus 212 DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~L~SgS~DgtIrvWd~~t~~~~l~~~~~~~~~~~l~~~ 291 (842)
||.|++|++.... ..+....+.+|...|++++|+ ...|++|+.|++|++||. ......+.
T Consensus 80 dg~i~~~~~~~~~-----~~~~~~~~~~~~~~i~~~~~~-~~~l~~~~~d~~i~~~d~--~~~~~~~~------------ 139 (313)
T 3odt_A 80 DTMINGVPLFATS-----GEDPLYTLIGHQGNVCSLSFQ-DGVVISGSWDKTAKVWKE--GSLVYNLQ------------ 139 (313)
T ss_dssp TSCEEEEETTCCT-----TSCC-CEECCCSSCEEEEEEE-TTEEEEEETTSEEEEEET--TEEEEEEE------------
T ss_pred CCeEEEEEeeecC-----CCCcccchhhcccCEEEEEec-CCEEEEEeCCCCEEEEcC--CcEEEecc------------
Confidence 9999999987641 124466789999999999993 234899999999999993 22111111
Q ss_pred eceeecccceeccceeeeecCCEEEEEEcC-CCCEEEEeC-CCcEEEEEccCCcEEEEeec-CCceEeeeecccCCCccc
Q 003171 292 RSYIDLRSHLSVNGFSSILTSDIKNLLSDH-SRAKVWSAG-FLSFALWDARTRELLKVFNI-DGQIENRVDMSLLPDFAM 368 (842)
Q Consensus 292 ~s~~~l~~~~~~~~~~~~~s~~v~~las~~-~~~~v~s~s-~~tI~lWD~~tg~~l~~l~~-~~~~~~~~~~s~~~~~~~ 368 (842)
.+ ...+..+...+ ++..+++++ ++.|++|| .++.+..+.. +....
T Consensus 140 -------~~----------~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d--~~~~~~~~~~~~~~~i------------- 187 (313)
T 3odt_A 140 -------AH----------NASVWDAKVVSFSENKFLTASADKTIKLWQ--NDKVIKTFSGIHNDVV------------- 187 (313)
T ss_dssp -------CC----------SSCEEEEEEEETTTTEEEEEETTSCEEEEE--TTEEEEEECSSCSSCE-------------
T ss_pred -------cC----------CCceeEEEEccCCCCEEEEEECCCCEEEEe--cCceEEEEeccCcccE-------------
Confidence 11 33455555544 566777666 67999999 4555555543 22221
Q ss_pred ccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEee--cC----ccccCCCceEEEEECCCCcEEEEeCCCeE
Q 003171 369 EDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAA--KG----GFGDDNRRTEALTTSIDGMIWTGGANGLL 442 (842)
Q Consensus 369 ~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~--~g----~~~~~~~~v~al~~s~dg~l~Sgs~DgtI 442 (842)
..+.+.+.+. .+++..++..+++. .+ .+..|...+.+++++|++++++|+.||+|
T Consensus 188 ------------------~~~~~~~~~~-~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~dg~v 248 (313)
T 3odt_A 188 ------------------RHLAVVDDGH-FISCSNDGLIKLVDMHTGDVLRTYEGHESFVYCIKLLPNGDIVSCGEDRTV 248 (313)
T ss_dssp ------------------EEEEEEETTE-EEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSCEEEEETTSEE
T ss_pred ------------------EEEEEcCCCe-EEEccCCCeEEEEECCchhhhhhhhcCCceEEEEEEecCCCEEEEecCCEE
Confidence 1233444444 45666666655554 12 34457788999999999999999999999
Q ss_pred EEEcC-CCCeeeeeecCCccEEEEEe--cCCEEEEEecCcEEEEEeCC-Cccc
Q 003171 443 LQWDP-NGNRLQDFQYLPFAVQCLCT--FGSQIWVGYMNGIVQVLDLE-GNLL 491 (842)
Q Consensus 443 rlWD~-~g~~l~~l~~H~~~V~sls~--dG~~LasGs~DgtIrlWD~~-g~~i 491 (842)
++||+ +++++..+..|...|.++++ +|+ +++|+.||.|++||++ ++.+
T Consensus 249 ~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~iw~~~~~~~~ 300 (313)
T 3odt_A 249 RIWSKENGSLKQVITLPAISIWSVDCMSNGD-IIVGSSDNLVRIFSQEKSRWA 300 (313)
T ss_dssp EEECTTTCCEEEEEECSSSCEEEEEECTTSC-EEEEETTSCEEEEESCGGGCC
T ss_pred EEEECCCCceeEEEeccCceEEEEEEccCCC-EEEEeCCCcEEEEeCCCCcee
Confidence 99999 78999999999999999875 566 6678999999999997 4443
|
| >1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C | Back alignment and structure |
|---|
Probab=99.92 E-value=5.4e-23 Score=225.53 Aligned_cols=273 Identities=11% Similarity=0.048 Sum_probs=192.3
Q ss_pred eEEEEec--CCEEEEe-cCCCEEEEeCCCCccccccccccccCCCCCCCCCCeeeeeecCCCeEEEEEcCCCCEEEEEeC
Q 003171 135 LRTIVCT--EEQLWAG-GENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGHR 211 (842)
Q Consensus 135 ~~~l~~~--~~~l~~~-~D~~vrvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~V~~la~dpdg~~LaSGs~ 211 (842)
+.+++.+ ++.|.++ .|+.|++||+.+.... . ...+ ..| ..+|.+++|+|++++|++|+.
T Consensus 11 i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~-~--------------~~~~--~~h-~~~v~~~~~~~~~~~l~~~~~ 72 (372)
T 1k8k_C 11 ISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWV-Q--------------VHEL--KEH-NGQVTGVDWAPDSNRIVTCGT 72 (372)
T ss_dssp CCEEEECTTSSEEEEECSSSEEEEEEEETTEEE-E--------------EEEE--ECC-SSCEEEEEEETTTTEEEEEET
T ss_pred eEEEEECCCCCEEEEEeCCCEEEEEeCCCCcEE-e--------------eeee--cCC-CCcccEEEEeCCCCEEEEEcC
Confidence 4455554 4456555 7999999998754200 0 0011 123 779999999999999999999
Q ss_pred CCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCCC-EEEeeCCCcEEEEeCCCccceeecCCCceeeeEEEE
Q 003171 212 DGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIV 290 (842)
Q Consensus 212 DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~~t~~~~l~~~~~~~~~~~l~~ 290 (842)
||+|++||+.++. ......+.+|...|++++|+|+|+ |++|+.|++|++||+.+....... ..+
T Consensus 73 dg~i~vwd~~~~~------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~-------~~~-- 137 (372)
T 1k8k_C 73 DRNAYVWTLKGRT------WKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVC-------KHI-- 137 (372)
T ss_dssp TSCEEEEEEETTE------EEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEE-------EEE--
T ss_pred CCeEEEEECCCCe------eeeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceee-------eee--
Confidence 9999999998751 122445578999999999999997 789999999999999764321000 000
Q ss_pred eeceeecccceeccceeeeecCCEEEEEEcCCCCEEEEeC-CCcEEEEEcc------------------CCcEEEEeecC
Q 003171 291 ERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDAR------------------TRELLKVFNID 351 (842)
Q Consensus 291 ~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s-~~tI~lWD~~------------------tg~~l~~l~~~ 351 (842)
..+| ...+.++++.+++..+++++ +++|++||+. +++++..+..+
T Consensus 138 ------~~~~----------~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (372)
T 1k8k_C 138 ------KKPI----------RSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSS 201 (372)
T ss_dssp ------CTTC----------CSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCC
T ss_pred ------eccc----------CCCeeEEEEcCCCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCC
Confidence 0011 34678888988888888876 6799999964 45555555433
Q ss_pred CceEeeeecccCCCcccccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEee--cC----ccccCCCceEEE
Q 003171 352 GQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAA--KG----GFGDDNRRTEAL 425 (842)
Q Consensus 352 ~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~--~g----~~~~~~~~v~al 425 (842)
... ...+.+.+++...+++..++..+++. .+ .+..+...+.++
T Consensus 202 ~~~-------------------------------v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~ 250 (372)
T 1k8k_C 202 CGW-------------------------------VHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASETLPLLAV 250 (372)
T ss_dssp SSC-------------------------------EEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEEECSSCCEEEE
T ss_pred CCe-------------------------------EEEEEECCCCCEEEEEeCCCEEEEEECCCCceeEEEccCCCCeEEE
Confidence 322 22344555555566677777666654 12 344567789999
Q ss_pred EECCCCcEEEEeCCCeEEEEcC-C--CC--ee------------------------------------eee-ecCCccEE
Q 003171 426 TTSIDGMIWTGGANGLLLQWDP-N--GN--RL------------------------------------QDF-QYLPFAVQ 463 (842)
Q Consensus 426 ~~s~dg~l~Sgs~DgtIrlWD~-~--g~--~l------------------------------------~~l-~~H~~~V~ 463 (842)
+++|++.+++++.|+.|++||+ + |+ ++ ..+ .+|...|+
T Consensus 251 ~~~~~~~~l~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~ 330 (372)
T 1k8k_C 251 TFITESSLVAAGHDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVS 330 (372)
T ss_dssp EEEETTEEEEEETTSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCCC---------CCCSSSSSSCEE
T ss_pred EEecCCCEEEEEeCCeEEEEEccCcCceEEEeeccCccccchhhhcchhhhhhhcccccccccCccccccccccccCCcc
Confidence 9999999766669999999999 5 31 11 223 48999999
Q ss_pred EEE---ecC---CEEEEEecCcEEEEEeCC
Q 003171 464 CLC---TFG---SQIWVGYMNGIVQVLDLE 487 (842)
Q Consensus 464 sls---~dG---~~LasGs~DgtIrlWD~~ 487 (842)
+++ .+| .+|++|+.||+|++||++
T Consensus 331 ~~~~~~~~g~~~~~l~s~~~Dg~i~~W~~~ 360 (372)
T 1k8k_C 331 QISVLSGGKAKCSQFCTTGMDGGMSIWDVR 360 (372)
T ss_dssp EEEEEESTTTSCSEEEEEETTSEEEEEEHH
T ss_pred eeEEecCCCcceeeEEEecCCCceEEEEec
Confidence 986 356 899999999999999985
|
| >4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.92 E-value=3e-22 Score=221.79 Aligned_cols=331 Identities=12% Similarity=0.088 Sum_probs=192.3
Q ss_pred eeEEEEecC---CEEEE-ecCCCEEEEeCCCCccccccccccccCCCCCCCCCCeeeeeecCCCeEEEEEcC-CCCEEEE
Q 003171 134 FLRTIVCTE---EQLWA-GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDE-ASGVVWS 208 (842)
Q Consensus 134 ~~~~l~~~~---~~l~~-~~D~~vrvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~V~~la~dp-dg~~LaS 208 (842)
.+.+++... +.|++ +.|+.|++||+.+....... .. .............| ..+|.+++|+| ++++|++
T Consensus 45 ~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~---~~---~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~l~s 117 (408)
T 4a11_B 45 GINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYY---TC---KAVCSIGRDHPDVH-RYSVETVQWYPHDTGMFTS 117 (408)
T ss_dssp CEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCE---EE---CEEEEECTTCTTCC-SSCEEEEEECTTCTTCEEE
T ss_pred cEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceE---ec---cccccccccccccC-CCcEEEEEEccCCCcEEEE
Confidence 455666543 45555 46999999999765432210 00 00000000000123 77999999999 7789999
Q ss_pred EeCCCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCC---C-EEEeeCCCcEEEEeCCCccceeecCCCcee
Q 003171 209 GHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYG---D-LWSGSEGGGIKIWPWEAIEKALSLKPEERH 284 (842)
Q Consensus 209 Gs~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG---~-L~SgS~DgtIrvWd~~t~~~~l~~~~~~~~ 284 (842)
|+.||+|++||+.++ +....+ .|...+.++++++.+ . +++|+.|+.|++||+.+++....+.
T Consensus 118 ~~~d~~i~iwd~~~~--------~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~----- 183 (408)
T 4a11_B 118 SSFDKTLKVWDTNTL--------QTADVF-NFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQ----- 183 (408)
T ss_dssp EETTSEEEEEETTTT--------EEEEEE-ECSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCCEEEC-----
T ss_pred EeCCCeEEEeeCCCC--------ccceec-cCCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcceeeeec-----
Confidence 999999999999986 444444 478899999999854 3 7899999999999997654322211
Q ss_pred eeEEEEeeceeecccceeccceeeeecCCEEEEEEcCCCC-EEEEeC-CCcEEEEEccCCc-EEEEeecCCceEeeeecc
Q 003171 285 TAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRA-KVWSAG-FLSFALWDARTRE-LLKVFNIDGQIENRVDMS 361 (842)
Q Consensus 285 ~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~-~v~s~s-~~tI~lWD~~tg~-~l~~l~~~~~~~~~~~~s 361 (842)
+| ...+.++++.+++. .+++++ +++|++||++++. ++..+..+.... .
T Consensus 184 --------------~~----------~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~-----~ 234 (408)
T 4a11_B 184 --------------GH----------RQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKK-----S 234 (408)
T ss_dssp --------------CC----------CSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCS-----C
T ss_pred --------------CC----------CCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCccccccccccccc-----c
Confidence 11 44678888888777 466665 6799999998875 444443221100 0
Q ss_pred cCCCcccccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEee--cCccc----c-----C-CCceEEEEECC
Q 003171 362 LLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAA--KGGFG----D-----D-NRRTEALTTSI 429 (842)
Q Consensus 362 ~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~--~g~~~----~-----~-~~~v~al~~s~ 429 (842)
..... ...........+.|.+++...+++..++..+++. .+... . . ......+....
T Consensus 235 ~~~~~-----------~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (408)
T 4a11_B 235 QAVES-----------ANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGC 303 (408)
T ss_dssp CCTTT-----------SSCSCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSS
T ss_pred eeecc-----------ccccccCceeEEEEcCCCCEEEEecCCCeEEEEECCCCccceeccccccccccccceeEEecCC
Confidence 00000 0001122334567777777778888888777765 11110 0 0 11111233344
Q ss_pred CCcEEEEeCCCeEEEEcC-CCCeeeeeecCCccEEEEEe--cCCEEEEEecCcEEEEEeCC-CcccccccccccCEEEEE
Q 003171 430 DGMIWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQCLCT--FGSQIWVGYMNGIVQVLDLE-GNLLGGWVAHSSPVIKMA 505 (842)
Q Consensus 430 dg~l~Sgs~DgtIrlWD~-~g~~l~~l~~H~~~V~sls~--dG~~LasGs~DgtIrlWD~~-g~~i~~l~gH~~~V~sla 505 (842)
.+.+++++.|+.|++||+ +++++..+.+|...|+++++ +|++|++|+.||+|++||++ ++.+.....+... ..+.
T Consensus 304 ~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~-~~~~ 382 (408)
T 4a11_B 304 SSEFVFVPYGSTIAVYTVYSGEQITMLKGHYKTVDCCVFQSNFQELYSGSRDCNILAWVPSLYEPVPDDDETTTK-SQLN 382 (408)
T ss_dssp SSCEEEEEETTEEEEEETTTCCEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEEECC------------------
T ss_pred CceEEEEecCCEEEEEECcCCcceeeeccCCCeEEEEEEcCCCCEEEEECCCCeEEEEeCCCCCccCCCCceEec-cccc
Confidence 556888888999999999 79999999999999998864 78999999999999999997 5555544443322 2222
Q ss_pred e-CCCEEEEEcCCCCeeecccc
Q 003171 506 V-GAGYIFTLANHGGIRGWNVT 526 (842)
Q Consensus 506 ~-dg~~l~S~S~DgtIrvWd~~ 526 (842)
+ ......+.+.|+.+++|+..
T Consensus 383 ~~~~~~~~~~~~~~~~~~W~~~ 404 (408)
T 4a11_B 383 PAFEDAWSSSDEEGGTSAWSHP 404 (408)
T ss_dssp ----------------------
T ss_pred cccceeecccCccCceeecCCc
Confidence 2 33445577889999999853
|
| >2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.92 E-value=2.9e-24 Score=247.82 Aligned_cols=254 Identities=6% Similarity=-0.041 Sum_probs=192.7
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCCCEEEeeCCCcEEEEeCC
Q 003171 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGDLWSGSEGGGIKIWPWE 270 (842)
Q Consensus 191 ~~~V~~la~dpdg~~LaSGs~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~L~SgS~DgtIrvWd~~ 270 (842)
..+|.+|+|+|||++||||+.|++|| |...+ ..+.||.+.|.+|+|+|+| .|+++++|+.+
T Consensus 15 ~~~v~sv~~SpDG~~iASas~D~TV~--d~~~~-----------~~l~gh~~~v~~V~FsPdg------~~~~~~~~~~~ 75 (588)
T 2j04_A 15 EDWKNNLTWARDGTLYLTTFPDISIG--QPKYA-----------KDINCNSKNLFHVKEFPLE------FENKLDFELAQ 75 (588)
T ss_dssp SSSSCCEEECTTSCEEEECSSSEEEE--EECCC-----------SCCSSBGGGTEEEEEECCC------CCCTTTTSCCC
T ss_pred hccEEEEEECCCCCEEEEEcCCceee--ccccc-----------ceecCCCccEEEEEECCCC------CcceEEEEeCC
Confidence 45899999999999999999999999 64443 3447999999999999998 56666666653
Q ss_pred CccceeecCCCceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcCCCCEEEEeC-CCcEEEEEccCCcEEEEee
Q 003171 271 AIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVFN 349 (842)
Q Consensus 271 t~~~~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s-~~tI~lWD~~tg~~l~~l~ 349 (842)
... .+.+. +...|.+++.+++|..+++++ +++|+|||..+ ++..+.
T Consensus 76 ~~~-~~~~~------------------------------~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~--~l~~l~ 122 (588)
T 2j04_A 76 QNG-LLNSQ------------------------------PVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK--MLTNLD 122 (588)
T ss_dssp SSC-SSTTS------------------------------CSCCEEEEEECSSSSCEEEEETTSCEEEEETTE--EEEECC
T ss_pred Cce-EeecC------------------------------CCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc--eeeecc
Confidence 211 11111 034688899999999898887 68999999654 555554
Q ss_pred cCCceEeeeecccCCCcccccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEee--cCcc------------
Q 003171 350 IDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAA--KGGF------------ 415 (842)
Q Consensus 350 ~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~--~g~~------------ 415 (842)
|.... ......++.|+++++..++|..+|..++|. .+.+
T Consensus 123 -~~~~~--------------------------~~~sv~svafSPDG~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~ 175 (588)
T 2j04_A 123 -SKGNL--------------------------SSRTYHCFEWNPIESSIVVGNEDGELQFFSIRKNSENTPEFYFESSIR 175 (588)
T ss_dssp -CSSCS--------------------------TTTCEEEEEECSSSSCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEE
T ss_pred -CCCcc--------------------------ccccEEEEEEcCCCCEEEEEcCCCEEEEEECCCCccccccceeeeeee
Confidence 32110 011233577888888888888888877776 2221
Q ss_pred ---ccCCCceEEEEECCCCcEEEEeCCCeEEEEcCCCCe----eeeee-cCCccEEEEEecCCEEEEEecCcEEEEEeCC
Q 003171 416 ---GDDNRRTEALTTSIDGMIWTGGANGLLLQWDPNGNR----LQDFQ-YLPFAVQCLCTFGSQIWVGYMNGIVQVLDLE 487 (842)
Q Consensus 416 ---~~~~~~v~al~~s~dg~l~Sgs~DgtIrlWD~~g~~----l~~l~-~H~~~V~sls~dG~~LasGs~DgtIrlWD~~ 487 (842)
.+|...|.+++++||| +++++.|++|++||+.++. .+++. +|...|.++++.|++||+++ +++|++||+.
T Consensus 176 ~~~~gh~~~V~sVawSPdg-Laass~D~tVrlWd~~~~~~~~~~~tL~~~h~~~V~svaFsg~~LASa~-~~tIkLWd~~ 253 (588)
T 2j04_A 176 LSDAGSKDWVTHIVWYEDV-LVAALSNNSVFSMTVSASSHQPVSRMIQNASRRKITDLKIVDYKVVLTC-PGYVHKIDLK 253 (588)
T ss_dssp CSCTTCCCCEEEEEEETTE-EEEEETTCCEEEECCCSSSSCCCEEEEECCCSSCCCCEEEETTEEEEEC-SSEEEEEETT
T ss_pred cccccccccEEEEEEcCCc-EEEEeCCCeEEEEECCCCccccceeeecccccCcEEEEEEECCEEEEEe-CCeEEEEECC
Confidence 4566799999999999 9999999999999995433 35674 78899999988789999987 7999999998
Q ss_pred Cccccccc-ccccCEEEEEe----CCCEEEEEcCCCCeeecccc
Q 003171 488 GNLLGGWV-AHSSPVIKMAV----GAGYIFTLANHGGIRGWNVT 526 (842)
Q Consensus 488 g~~i~~l~-gH~~~V~sla~----dg~~l~S~S~DgtIrvWd~~ 526 (842)
++.+..+. +|.+.|+.|++ |++.+++++.||+ |+|.+.
T Consensus 254 ~~~~~~~~~gh~~~V~~va~~~s~d~~~La~a~edG~-klw~~d 296 (588)
T 2j04_A 254 NYSISSLKTGSLENFHIIPLNHEKESTILLMSNKTSY-KVLLED 296 (588)
T ss_dssp TTEEEEEECSCCSCCCEEEETTCSSCEEEEECSSCEE-EEEESS
T ss_pred CCeEEEEEcCCCceEEEEEeeeCCCCCEEEEEcCCCC-EEEeec
Confidence 66553333 89999998875 5667999999999 999964
|
| >2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.92 E-value=1e-22 Score=232.21 Aligned_cols=235 Identities=10% Similarity=0.095 Sum_probs=176.9
Q ss_pred CCCeEEEEEcCCCCEE-EEEeCCCcEEEEECC--CCccCCCCCcceeEEec--ccCCcEEEEEEecCCC-EEEeeCCCcE
Q 003171 191 VSSVMCMVGDEASGVV-WSGHRDGRIMCWKMN--ARLLDSDDGFGEVLSWQ--AHRGPVLSLCISSYGD-LWSGSEGGGI 264 (842)
Q Consensus 191 ~~~V~~la~dpdg~~L-aSGs~DGtIrlWdl~--~g~~~~~~~~~~~~~l~--gH~~~V~slafs~dG~-L~SgS~DgtI 264 (842)
.+.|.|++|+|++++| ++|+.||+|++||+. ++ .....+. +|...|++|+|+|+|+ |++|+.|+.|
T Consensus 102 ~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~--------~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~g~v 173 (450)
T 2vdu_B 102 YSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSK--------NVLKLRKRFCFSKRPNAISIAEDDTTVIIADKFGDV 173 (450)
T ss_dssp CCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSS--------SCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEE
T ss_pred CCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCC--------ceeeeeecccCCCCceEEEEcCCCCEEEEEeCCCcE
Confidence 4479999999999996 999999999999998 65 4555565 6789999999999998 7899999999
Q ss_pred EEEeCCCcccee-ecCCCceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcCC---CCEEEEeC-CCcEEEEEc
Q 003171 265 KIWPWEAIEKAL-SLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHS---RAKVWSAG-FLSFALWDA 339 (842)
Q Consensus 265 rvWd~~t~~~~l-~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~---~~~v~s~s-~~tI~lWD~ 339 (842)
++|++.+..... ... .+.+| ...+.+++++++ +..|++++ +++|++||+
T Consensus 174 ~~~~~~~~~~~~~~~~----------------~~~~h----------~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~ 227 (450)
T 2vdu_B 174 YSIDINSIPEEKFTQE----------------PILGH----------VSMLTDVHLIKDSDGHQFIITSDRDEHIKISHY 227 (450)
T ss_dssp EEEETTSCCCSSCCCC----------------CSEEC----------SSCEEEEEEEECTTSCEEEEEEETTSCEEEEEE
T ss_pred EEEecCCcccccccce----------------eeecc----------cCceEEEEEcCCCCCCcEEEEEcCCCcEEEEEC
Confidence 999987643211 000 01111 446778888887 76777776 679999999
Q ss_pred cCCcEEEEeecCCceEeeeecccCCCcccccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEeecCccccCC
Q 003171 340 RTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDN 419 (842)
Q Consensus 340 ~tg~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~ 419 (842)
.+++++..+. .+|.
T Consensus 228 ~~~~~~~~~~------------------------------------------------------------------~~h~ 241 (450)
T 2vdu_B 228 PQCFIVDKWL------------------------------------------------------------------FGHK 241 (450)
T ss_dssp SCTTCEEEEC------------------------------------------------------------------CCCS
T ss_pred CCCceeeeee------------------------------------------------------------------cCCC
Confidence 8876544321 1233
Q ss_pred CceEEEEECCCCc-EEEEeCCCeEEEEcC-CCCeeeeeecC-------------------------CccEEEEEe--cCC
Q 003171 420 RRTEALTTSIDGM-IWTGGANGLLLQWDP-NGNRLQDFQYL-------------------------PFAVQCLCT--FGS 470 (842)
Q Consensus 420 ~~v~al~~s~dg~-l~Sgs~DgtIrlWD~-~g~~l~~l~~H-------------------------~~~V~sls~--dG~ 470 (842)
..|.+++|+ +|. |++|+.|++|++||+ ++++++++..+ ...|.+++. +|+
T Consensus 242 ~~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~ 320 (450)
T 2vdu_B 242 HFVSSICCG-KDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLP 320 (450)
T ss_dssp SCEEEEEEC-STTEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSSS
T ss_pred CceEEEEEC-CCCEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCCC
Confidence 456678888 776 899999999999999 78888888633 345777754 689
Q ss_pred EEEEEe-cCcEEEEEeC--C-C---cccccccccccCEEEEEeCCC-EEEEEcC-------CCCeeeccccC
Q 003171 471 QIWVGY-MNGIVQVLDL--E-G---NLLGGWVAHSSPVIKMAVGAG-YIFTLAN-------HGGIRGWNVTS 527 (842)
Q Consensus 471 ~LasGs-~DgtIrlWD~--~-g---~~i~~l~gH~~~V~sla~dg~-~l~S~S~-------DgtIrvWd~~~ 527 (842)
+|++++ .|++|+|||+ . + +++..+.+| +.|++++++++ .+++.+. +..|++|.+..
T Consensus 321 ~l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~~~~-~~v~~~~~~~~~~~v~~~~~~~~~~~~~~i~v~~~~~ 391 (450)
T 2vdu_B 321 FVAFFVEATKCIIILEMSEKQKGDLALKQIITFP-YNVISLSAHNDEFQVTLDNKESSGVQKNFAKFIEYNL 391 (450)
T ss_dssp EEEEEETTCSEEEEEEECSSSTTCEEEEEEEECS-SCEEEEEEETTEEEEEECCTTCCSSCCCSEEEEEEET
T ss_pred EEEEEECCCCeEEEEEeccCCCCceeeccEeccC-CceEEEEecCCcEEEEEecccCCCCCCcceEEEEEEc
Confidence 999999 8999999999 4 4 467788888 88999997554 4444433 55688887653
|
| >3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.92 E-value=4.3e-23 Score=233.09 Aligned_cols=291 Identities=13% Similarity=0.140 Sum_probs=183.6
Q ss_pred eeEEEEecC-C--EEEE-ecCCCEEEEeCCCCccccccccccccCCCCCCCCCCeeeeeecCCCeEEEEEcCCCCEEEEE
Q 003171 134 FLRTIVCTE-E--QLWA-GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSG 209 (842)
Q Consensus 134 ~~~~l~~~~-~--~l~~-~~D~~vrvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~V~~la~dpdg~~LaSG 209 (842)
.+.+++... + .|.+ +.|++|+|||+.+.....+ ....... .| ..+|.|++|+|++++|++|
T Consensus 65 ~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~-------------~~~~~~~-~h-~~~v~~~~~~~~~~~l~s~ 129 (437)
T 3gre_A 65 SITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEV-------------YSSSLTY-DC-SSTVTQITMIPNFDAFAVS 129 (437)
T ss_dssp CEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCC-------------CSCSEEE-EC-SSCEEEEEECTTSSEEEEE
T ss_pred ceEEEEECCCCCCEEEEecCCceEEEeECcccccCcc-------------cceeeec-cC-CCCEEEEEEeCCCCEEEEE
Confidence 566777655 3 4554 5699999999865211100 0001111 24 7899999999999999999
Q ss_pred eCCCcEEEEECC---CCccCCCCCcceeEEecc------------cCCcEEEEE--EecCCC-EEEeeCCCcEEEEeCCC
Q 003171 210 HRDGRIMCWKMN---ARLLDSDDGFGEVLSWQA------------HRGPVLSLC--ISSYGD-LWSGSEGGGIKIWPWEA 271 (842)
Q Consensus 210 s~DGtIrlWdl~---~g~~~~~~~~~~~~~l~g------------H~~~V~sla--fs~dG~-L~SgS~DgtIrvWd~~t 271 (842)
+.||+|++||+. .+ +....+.+ |...+.++. +++++. |++|+.|++|++||+.+
T Consensus 130 s~dg~i~vwd~~~~~~~--------~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~ 201 (437)
T 3gre_A 130 SKDGQIIVLKVNHYQQE--------SEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRT 201 (437)
T ss_dssp ETTSEEEEEEEEEEEET--------TEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTT
T ss_pred eCCCEEEEEEeccccCC--------ceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCC
Confidence 999999999995 33 22222222 556677776 456776 78999999999999977
Q ss_pred ccceeecCCCceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcCCCCEEEEeC-CCcEEEEEccCCcEEEEee-
Q 003171 272 IEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVFN- 349 (842)
Q Consensus 272 ~~~~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s-~~tI~lWD~~tg~~l~~l~- 349 (842)
.+....+... .| ...+.++++++++..+++++ +++|++||+++++++.++.
T Consensus 202 ~~~~~~~~~~-----------------~h----------~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 254 (437)
T 3gre_A 202 LERLQIIENS-----------------PR----------HGAVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIRSWSF 254 (437)
T ss_dssp CCEEEEEECC-----------------GG----------GCCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEEBC
T ss_pred CeeeEEEccC-----------------CC----------CCceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEEEEEec
Confidence 5432222110 01 34688899988888888877 5789999999999998875
Q ss_pred cCCceEeeeecccC----CCccc--ccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEee--------cCcc
Q 003171 350 IDGQIENRVDMSLL----PDFAM--EDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAA--------KGGF 415 (842)
Q Consensus 350 ~~~~~~~~~~~s~~----~~~~~--~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~--------~g~~ 415 (842)
.+...+..+.+.+. ....+ ..+..+++|.... .... ..+.++...+..+.. ...+
T Consensus 255 ~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~-~~~~----------~~~~~~~~~~~~~~~~~~~~~l~~~~~ 323 (437)
T 3gre_A 255 GDHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVK-GHCQ----------YAFINSDEQPSMEHFLPIEKGLEELNF 323 (437)
T ss_dssp TTCEEEEEEEECTTTCTTEEEEEEESTTEEEEEEETTT-TEEE----------EEEESSSSCCCGGGGSCBCSSGGGCCC
T ss_pred CCCCceEEEEeccccCCCccEEEEEcCCCcEEEEEcCC-CcEE----------EEEEcCCCCCccceeccccccccccee
Confidence 44433344422221 10100 1111122222110 0000 011111111100000 0122
Q ss_pred cc--CCCceEEEEECCCCcEEEEeCCCeEEEEcC-CCCeeeeeec-----------------------------------
Q 003171 416 GD--DNRRTEALTTSIDGMIWTGGANGLLLQWDP-NGNRLQDFQY----------------------------------- 457 (842)
Q Consensus 416 ~~--~~~~v~al~~s~dg~l~Sgs~DgtIrlWD~-~g~~l~~l~~----------------------------------- 457 (842)
.+ |...|.+++++++..|++|+.|++|++||+ ++++++.+.+
T Consensus 324 ~~~~~~~~v~~l~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (437)
T 3gre_A 324 CGIRSLNALSTISVSNDKILLTDEATSSIVMFSLNELSSSKAVISPSRFSDVFIPTQVTANLTMLLRKMKRTSTHSVDDS 403 (437)
T ss_dssp CCCCSGGGGCCEEEETTEEEEEEGGGTEEEEEETTCGGGCEEEECC--CCCEEEEEEEETTEEEEEEECC----------
T ss_pred cccccCCceEEEEECCceEEEecCCCCeEEEEECCCcccceEEecccccCceEEEEEeecceEEEEEecccccccccCcc
Confidence 33 666788999994445899999999999999 7888877776
Q ss_pred --CCccEEEEEe--c--CCEEEEEecCcEEEEEe
Q 003171 458 --LPFAVQCLCT--F--GSQIWVGYMNGIVQVLD 485 (842)
Q Consensus 458 --H~~~V~sls~--d--G~~LasGs~DgtIrlWD 485 (842)
|.+.|++++. + +.+|++|+.||+|+||+
T Consensus 404 ~~h~~~I~~i~~~~~~~~~~l~s~~~dG~I~iw~ 437 (437)
T 3gre_A 404 LYHHDIINSISTCEVDETPLLVACDNSGLIGIFQ 437 (437)
T ss_dssp ---CCCEEEEEEEESSSSEEEEEEETTSCEEEEC
T ss_pred cccccceeeEeeeccCCceEEEEEcCCceEEEeC
Confidence 8899999864 4 55999999999999995
|
| >3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A | Back alignment and structure |
|---|
Probab=99.91 E-value=1.4e-22 Score=218.03 Aligned_cols=267 Identities=12% Similarity=0.071 Sum_probs=176.0
Q ss_pred eeEEEEec--CCEEEE-ecCCCEEEEeCCCCccccccccccccCCCCCCCCCCeeeeeecCCCeEEEEEcC--CCCEEEE
Q 003171 134 FLRTIVCT--EEQLWA-GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDE--ASGVVWS 208 (842)
Q Consensus 134 ~~~~l~~~--~~~l~~-~~D~~vrvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~V~~la~dp--dg~~LaS 208 (842)
.+.+++.+ +..|.+ +.|+.|++||+.+...... .......| ..+|.|++|+| ++++|++
T Consensus 13 ~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~---------------~~~~~~~~-~~~v~~~~~~~~~d~~~l~s 76 (351)
T 3f3f_A 13 LVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWE---------------LSDSWRAH-DSSIVAIDWASPEYGRIIAS 76 (351)
T ss_dssp CEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEE---------------EEEEEECC-SSCEEEEEECCGGGCSEEEE
T ss_pred ceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcce---------------ecceeccC-CCcEEEEEEcCCCCCCEEEE
Confidence 56677765 335555 5689999999975322100 00011123 78999999999 6999999
Q ss_pred EeCCCcEEEEECCCCccC-CCCCcceeEEecccCCcEEEEEEecC--CC-EEEeeCCCcEEEEeCCCccceeecCCCcee
Q 003171 209 GHRDGRIMCWKMNARLLD-SDDGFGEVLSWQAHRGPVLSLCISSY--GD-LWSGSEGGGIKIWPWEAIEKALSLKPEERH 284 (842)
Q Consensus 209 Gs~DGtIrlWdl~~g~~~-~~~~~~~~~~l~gH~~~V~slafs~d--G~-L~SgS~DgtIrvWd~~t~~~~l~~~~~~~~ 284 (842)
|+.||+|++||+.++... .....+....+.+|.+.|++++|+|+ +. |++|+.|++|++||+.+.+....+.... .
T Consensus 77 ~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~-~ 155 (351)
T 3f3f_A 77 ASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTS-E 155 (351)
T ss_dssp EETTSCEEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEE-E
T ss_pred EcCCCeEEEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhccccccc-c
Confidence 999999999999875210 00112346778899999999999999 87 7899999999999997754321111000 0
Q ss_pred eeEEEEeeceeecccceeccceeeeecCCEEEEEEcCC---CCEEEEeC-CCcEEEEEccCCcEEEEeecCCceEeeeec
Q 003171 285 TAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHS---RAKVWSAG-FLSFALWDARTRELLKVFNIDGQIENRVDM 360 (842)
Q Consensus 285 ~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~---~~~v~s~s-~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~ 360 (842)
.. ...+ ........+.++...+. +..+++++ ++.+.+|+..+++.....
T Consensus 156 ~~-------~~~~--------~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~------------ 208 (351)
T 3f3f_A 156 MK-------VLSI--------PPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAA------------ 208 (351)
T ss_dssp EE-------SCSC--------CCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEE------------
T ss_pred cc-------cccc--------ccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeee------------
Confidence 00 0000 00011345677777765 66666666 456666665554431110
Q ss_pred ccCCCcccccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEeecCccccCCCceEEEEECCCC----c-EEE
Q 003171 361 SLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDG----M-IWT 435 (842)
Q Consensus 361 s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~al~~s~dg----~-l~S 435 (842)
.+..|...|.+++++|++ . |++
T Consensus 209 -----------------------------------------------------~~~~h~~~i~~~~~~p~~~~~~~~l~s 235 (351)
T 3f3f_A 209 -----------------------------------------------------KLPGHKSLIRSISWAPSIGRWYQLIAT 235 (351)
T ss_dssp -----------------------------------------------------ECCCCCSCEEEEEECCCSSCSSEEEEE
T ss_pred -----------------------------------------------------ecCCCCcceeEEEECCCCCCcceEEEE
Confidence 022344556677788876 3 778
Q ss_pred EeCCCeEEEEcC-CC----------------------------------------------CeeeeeecCCccEEEEEe-
Q 003171 436 GGANGLLLQWDP-NG----------------------------------------------NRLQDFQYLPFAVQCLCT- 467 (842)
Q Consensus 436 gs~DgtIrlWD~-~g----------------------------------------------~~l~~l~~H~~~V~sls~- 467 (842)
|+.||+|++||+ .+ +++..+.+|...|+++++
T Consensus 236 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s 315 (351)
T 3f3f_A 236 GCKDGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVWSVSWN 315 (351)
T ss_dssp EETTSCEEEEEEEECC---------------------------------------CCSEEEEEEEEECTTSSCEEEEEEC
T ss_pred EcCCCeEEEEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEEEecccccEEEEEEc
Confidence 888888888887 33 677888899999999875
Q ss_pred -cCCEEEEEecCcEEEEEeCC-Cc---cccccccc
Q 003171 468 -FGSQIWVGYMNGIVQVLDLE-GN---LLGGWVAH 497 (842)
Q Consensus 468 -dG~~LasGs~DgtIrlWD~~-g~---~i~~l~gH 497 (842)
+|++|++|+.||+|+|||++ ++ ++..+..|
T Consensus 316 ~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~ 350 (351)
T 3f3f_A 316 LTGTILSSAGDDGKVRLWKATYSNEFKCMSVITAQ 350 (351)
T ss_dssp SSSCCEEEEETTSCEEEEEECTTSCEEEEEEEC--
T ss_pred CCCCEEEEecCCCcEEEEecCcCcchhheeehccc
Confidence 68999999999999999987 43 44554444
|
| >2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B | Back alignment and structure |
|---|
Probab=99.91 E-value=2.2e-23 Score=236.57 Aligned_cols=247 Identities=14% Similarity=0.149 Sum_probs=187.5
Q ss_pred CCCeEEEEEcCC-CCEEEEEeCCCcEEEEECCCCccCC--CCCcceeEEecccCCcEEEEEEecCCC--EEEeeCCCcEE
Q 003171 191 VSSVMCMVGDEA-SGVVWSGHRDGRIMCWKMNARLLDS--DDGFGEVLSWQAHRGPVLSLCISSYGD--LWSGSEGGGIK 265 (842)
Q Consensus 191 ~~~V~~la~dpd-g~~LaSGs~DGtIrlWdl~~g~~~~--~~~~~~~~~l~gH~~~V~slafs~dG~--L~SgS~DgtIr 265 (842)
.++|.+++++|+ +.+|++|+.||+|++|++....... .........+.+|.+.|++|+|+|++. |++|+.||+|+
T Consensus 128 ~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~ 207 (430)
T 2xyi_A 128 EGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTIC 207 (430)
T ss_dssp SSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEECTTSCEE
T ss_pred CCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEeCCCeEE
Confidence 789999999997 6899999999999999997620000 001256778899999999999999986 78999999999
Q ss_pred EEeCCCccceeecCCCceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcC-CCCEEEEeC-CCcEEEEEccCCc
Q 003171 266 IWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDH-SRAKVWSAG-FLSFALWDARTRE 343 (842)
Q Consensus 266 vWd~~t~~~~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~-~~~~v~s~s-~~tI~lWD~~tg~ 343 (842)
+|++.+......... ... .+.+| ...+.+++..+ ++..+++++ ++.|++||++++.
T Consensus 208 vwd~~~~~~~~~~~~---~~~---------~~~~h----------~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~ 265 (430)
T 2xyi_A 208 LWDINATPKEHRVID---AKN---------IFTGH----------TAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNN 265 (430)
T ss_dssp EEETTSCCBGGGEEE---CSE---------EECCC----------SSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSC
T ss_pred EEeCCCCCCCCceec---cce---------eecCC----------CCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCC
Confidence 999976321100000 000 01111 44678888887 556776765 6899999998652
Q ss_pred ---EEEEeecCCceEeeeecccCCCcccccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEeecCccccCCC
Q 003171 344 ---LLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNR 420 (842)
Q Consensus 344 ---~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~ 420 (842)
.+.. +..|..
T Consensus 266 ~~~~~~~-------------------------------------------------------------------~~~~~~ 278 (430)
T 2xyi_A 266 TSKPSHT-------------------------------------------------------------------VDAHTA 278 (430)
T ss_dssp SSSCSEE-------------------------------------------------------------------EECCSS
T ss_pred CCcceeE-------------------------------------------------------------------eecCCC
Confidence 1000 112345
Q ss_pred ceEEEEECCCCc--EEEEeCCCeEEEEcC-C-CCeeeeeecCCccEEEEEe--cCC-EEEEEecCcEEEEEeCCC-----
Q 003171 421 RTEALTTSIDGM--IWTGGANGLLLQWDP-N-GNRLQDFQYLPFAVQCLCT--FGS-QIWVGYMNGIVQVLDLEG----- 488 (842)
Q Consensus 421 ~v~al~~s~dg~--l~Sgs~DgtIrlWD~-~-g~~l~~l~~H~~~V~sls~--dG~-~LasGs~DgtIrlWD~~g----- 488 (842)
.|.+++++|++. +++|+.||+|++||+ + +.++.++.+|...|.++++ +++ .|++|+.|++|+|||+..
T Consensus 279 ~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~~ 358 (430)
T 2xyi_A 279 EVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQ 358 (430)
T ss_dssp CEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSCCEEEEGGGTTCCC
T ss_pred CeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeecCCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCcccc
Confidence 577889999885 789999999999999 4 5788999999999999865 564 799999999999999863
Q ss_pred ----------cccccccccccCEEEEEe--CCC-EEEEEcCCCCeeecccc
Q 003171 489 ----------NLLGGWVAHSSPVIKMAV--GAG-YIFTLANHGGIRGWNVT 526 (842)
Q Consensus 489 ----------~~i~~l~gH~~~V~sla~--dg~-~l~S~S~DgtIrvWd~~ 526 (842)
+++..+.+|.+.|.++++ ++. .++|++.|+.|++|++.
T Consensus 359 ~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~ 409 (430)
T 2xyi_A 359 STEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMA 409 (430)
T ss_dssp CHHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEETTSEEEEEEEC
T ss_pred CccccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEECCCCEEEeEcc
Confidence 567788899999999986 555 89999999999999974
|
| >3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.91 E-value=3.8e-23 Score=228.35 Aligned_cols=287 Identities=11% Similarity=0.035 Sum_probs=179.4
Q ss_pred eEEEEec--CCEEEEe-cCCCEEEEeCCCC--ccccccccccccCCCCCCCCCCeeeeeecCCCeEEEEEcCCCCEEEEE
Q 003171 135 LRTIVCT--EEQLWAG-GENGLRVWNLKEL--YDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSG 209 (842)
Q Consensus 135 ~~~l~~~--~~~l~~~-~D~~vrvWdl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~V~~la~dpdg~~LaSG 209 (842)
+.+++.. ++.|.++ .|+.|++||+.+. .... .+. .| ..+|.|++|+|++++|++|
T Consensus 14 v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~-----------------~~~--~h-~~~v~~~~~s~~~~~l~s~ 73 (377)
T 3dwl_C 14 SYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHAR-----------------TFS--DH-DKIVTCVDWAPKSNRIVTC 73 (377)
T ss_dssp CSCCEECSSSSEEECCCSSSCBCEEEEETTEEEECC-----------------CBC--CC-SSCEEEEEECTTTCCEEEE
T ss_pred EEEEEECCCCCEEEEecCCCEEEEEEccCCceEEEE-----------------EEe--cC-CceEEEEEEeCCCCEEEEE
Confidence 4444444 4455554 6999999999754 2111 111 23 7799999999999999999
Q ss_pred eCCCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCCC-EEEeeCCCcEEEEeCCCccceeecCCCceeeeEE
Q 003171 210 HRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEKALSLKPEERHTAAL 288 (842)
Q Consensus 210 s~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~~t~~~~l~~~~~~~~~~~l 288 (842)
+.||+|++||+.++. .......+.+|.+.|++++|+|+|+ |++|+.|++|++||+.+.+... . ..
T Consensus 74 s~d~~v~vwd~~~~~-----~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~-~------~~-- 139 (377)
T 3dwl_C 74 SQDRNAYVYEKRPDG-----TWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWW-V------SK-- 139 (377)
T ss_dssp ETTSSEEEC-----------CCCCEEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CC-C------CE--
T ss_pred eCCCeEEEEEcCCCC-----ceeeeeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccce-e------ee--
Confidence 999999999998851 1235677889999999999999997 8999999999999997643100 0 00
Q ss_pred EEeeceeecccceeccceeeeecCCEEEEEEcCCCCEEEEeC-CCcEEEEEccCCcEEEEeecCCceEeeeecccCCCcc
Q 003171 289 IVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFA 367 (842)
Q Consensus 289 ~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s-~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~~ 367 (842)
.+.+ .+...+.++++++++..+++++ +++|++||+.+++........ .....
T Consensus 140 -------~~~~---------~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~----------~~~~~- 192 (377)
T 3dwl_C 140 -------HLKR---------PLRSTILSLDWHPNNVLLAAGCADRKAYVLSAYVRDVDAKPEAS----------VWGSR- 192 (377)
T ss_dssp -------EECS---------SCCSCEEEEEECTTSSEEEEEESSSCEEEEEECCSSCC-CCCSC----------SSCSC-
T ss_pred -------Eeec---------ccCCCeEEEEEcCCCCEEEEEeCCCEEEEEEEEecccCCCcccc----------ccccc-
Confidence 0111 0145688899988888888876 678999999754421100000 00000
Q ss_pred cccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEee--cC--------ccccCCCceEEEEECCCCc-EEEE
Q 003171 368 MEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAA--KG--------GFGDDNRRTEALTTSIDGM-IWTG 436 (842)
Q Consensus 368 ~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~--~g--------~~~~~~~~v~al~~s~dg~-l~Sg 436 (842)
.. ..+ ..........+..+.|.+++...+++..++..+++. .+ .+..|...|.+++++|+|. |++|
T Consensus 193 ~~-~~~--~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~ 269 (377)
T 3dwl_C 193 LP-FNT--VCAEYPSGGWVHAVGFSPSGNALAYAGHDSSVTIAYPSAPEQPPRALITVKLSQLPLRSLLWANESAIVAAG 269 (377)
T ss_dssp CC-EEE--EEECCCCSSSEEEEEECTTSSCEEEEETTTEEC-CEECSTTSCEEECCCEECSSSCEEEEEEEETTEEEEEE
T ss_pred cc-hhh--hhhcccCCceEEEEEECCCCCEEEEEeCCCcEEEEECCCCCCcceeeEeecCCCCceEEEEEcCCCCEEEEE
Confidence 00 000 000001122334566777777777788887776664 22 2345777899999999998 5666
Q ss_pred eCCCeEEEEcCC--C-Ceee----------------------------------ee----------------ecCCccEE
Q 003171 437 GANGLLLQWDPN--G-NRLQ----------------------------------DF----------------QYLPFAVQ 463 (842)
Q Consensus 437 s~DgtIrlWD~~--g-~~l~----------------------------------~l----------------~~H~~~V~ 463 (842)
+.|+ +.+|+.. + +... .| ..|.+.|+
T Consensus 270 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~H~~~i~ 348 (377)
T 3dwl_C 270 YNYS-PILLQGNESGWAHTRDLDAGTSKTSFTHTGNTGEGREEEGPVSFTALRSTFRNMDLKGSSQSISSLPTVHQNMIA 348 (377)
T ss_dssp SSSS-EEEECCCC---CCSBCCCSCCCCCCBSSSSSBCCCCCC-------------------------CCCSSSCSSCEE
T ss_pred cCCc-EEEEEeCCCceEEEeeecccccccccccccccccccccccccccccccccccchhhccccccccccCccccceeE
Confidence 6555 5577662 2 1111 11 12999999
Q ss_pred EEEe---cCC---EEEEEecCcEEEEEeC
Q 003171 464 CLCT---FGS---QIWVGYMNGIVQVLDL 486 (842)
Q Consensus 464 sls~---dG~---~LasGs~DgtIrlWD~ 486 (842)
++.+ ++. +|++|+.||+|+|||+
T Consensus 349 ~~~~~~~~~~~~~~~~s~g~Dg~i~iWdl 377 (377)
T 3dwl_C 349 TLRPYAGTPGNITAFTSSGTDGRVVLWTL 377 (377)
T ss_dssp EEEEEEEETTEEEEEEEEETTSEEEEECC
T ss_pred EEeccCCCCCceEEEEeecCCCcEEEecC
Confidence 9864 233 7999999999999995
|
| >4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* | Back alignment and structure |
|---|
Probab=99.91 E-value=2.1e-23 Score=236.97 Aligned_cols=285 Identities=12% Similarity=0.085 Sum_probs=187.2
Q ss_pred cccccccCCCcccccccccccCCCCC--CCceeecCCCCCccccCceeEEEEec---CCEEEE-ecCCCEEEEeCCCCcc
Q 003171 90 LPEYIGKGGDIPMFKPPVRAALHPAR--PPSLEVKPHPLRETQIGCFLRTIVCT---EEQLWA-GGENGLRVWNLKELYD 163 (842)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~~---~~~l~~-~~D~~vrvWdl~~~~~ 163 (842)
.+..|+.|+.+|. |+-|-.... +..+.+..| ...+.+|+.. ++.|++ +.|++||+||+++...
T Consensus 131 ~~~~lasGs~dg~----i~lWd~~~~~~~~~~~~~gH-------~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~~~~~ 199 (435)
T 4e54_B 131 HPSTVAVGSKGGD----IMLWNFGIKDKPTFIKGIGA-------GGSITGLKFNPLNTNQFYASSMEGTTRLQDFKGNIL 199 (435)
T ss_dssp CTTCEEEEETTSC----EEEECSSCCSCCEEECCCSS-------SCCCCEEEECSSCTTEEEEECSSSCEEEEETTSCEE
T ss_pred CCCEEEEEeCCCE----EEEEECCCCCceeEEEccCC-------CCCEEEEEEeCCCCCEEEEEeCCCEEEEeeccCCce
Confidence 5667777777775 444422211 112222233 1356677764 346665 5699999999965321
Q ss_pred ccccccccccCCCCCCCCCCeeeeeec-CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEecccCC
Q 003171 164 ESESDSVSVSKSKGEDGTAPFKESVKG-VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRG 242 (842)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~g-~~~V~~la~dpdg~~LaSGs~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~ 242 (842)
.. +.. .+. ...+.|++++|++++|++|+.||+|++||+.+ +++.++.+|.+
T Consensus 200 ~~------------------~~~-~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~---------~~~~~~~~h~~ 251 (435)
T 4e54_B 200 RV------------------FAS-SDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDG---------KELWNLRMHKK 251 (435)
T ss_dssp EE------------------EEC-CSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESSS---------CBCCCSBCCSS
T ss_pred eE------------------Eec-cCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccCc---------ceeEEEecccc
Confidence 10 100 111 44688999999999999999999999999976 46778899999
Q ss_pred cEEEEEEecCCC--EEEeeCCCcEEEEeCCCccceeecCCCceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEc
Q 003171 243 PVLSLCISSYGD--LWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSD 320 (842)
Q Consensus 243 ~V~slafs~dG~--L~SgS~DgtIrvWd~~t~~~~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~ 320 (842)
.|++|+|+|++. |++|+.|++|+|||+.+......+.. ..+| ...|.+++++
T Consensus 252 ~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~~~----------------~~~h----------~~~v~~~~~s 305 (435)
T 4e54_B 252 KVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLY----------------SLPH----------RHPVNAACFS 305 (435)
T ss_dssp CEEEEEECTTCSSEEEEEETTSBCCEEETTTCCSSSCCSB----------------CCBC----------SSCEEECCBC
T ss_pred eEEeeeecCCCceEEEEecCcceeeEEecccccccceEEE----------------eeec----------cccccceeEC
Confidence 999999999986 67999999999999976432211110 0111 3467788888
Q ss_pred CCCCEEEEeC-CCcEEEEEccCCcEEEEeecCCceEeeeecccCCCcccccceEEEEEecCCCCccceeeeEeecCcceE
Q 003171 321 HSRAKVWSAG-FLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAI 399 (842)
Q Consensus 321 ~~~~~v~s~s-~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~ 399 (842)
+++..|++++ |++|+|||+.++++...+..+..... .. . ... ...+.
T Consensus 306 pdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~----~~--~------------~~~-------~~~~~------- 353 (435)
T 4e54_B 306 PDGARLLTTDQKSEIRVYSASQWDCPLGLIPHPHRHF----QH--L------------TPI-------KAAWH------- 353 (435)
T ss_dssp TTSSEEEEEESSSCEEEEESSSSSSEEEECCCCCCCC----SS--S------------CCC-------BCEEC-------
T ss_pred CCCCeeEEEcCCCEEEEEECCCCccceEEeccccccc----cc--c------------eeE-------EEEEc-------
Confidence 8888888877 68999999999988776654432100 00 0 000 00010
Q ss_pred EecCCcEEEEeecCccccCCCceEEEEECCCCc--EEEEeCCCeEEEEcC-CCCeeeeee-cCCccEEEE---EecCCEE
Q 003171 400 MGAADAVRRVAAKGGFGDDNRRTEALTTSIDGM--IWTGGANGLLLQWDP-NGNRLQDFQ-YLPFAVQCL---CTFGSQI 472 (842)
Q Consensus 400 ~g~~~~v~~v~~~g~~~~~~~~v~al~~s~dg~--l~Sgs~DgtIrlWD~-~g~~l~~l~-~H~~~V~sl---s~dG~~L 472 (842)
....+..+.+++++. ++++..+++|++||. +|+++.++. +|...|.++ +++|++|
T Consensus 354 ------------------~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~~~~~~~v~s~~~fspdg~~l 415 (435)
T 4e54_B 354 ------------------PRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYDPESSGISSLNEFNPMGDTL 415 (435)
T ss_dssp ------------------SSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEECCSSCCCCCCEEEECTTSSCE
T ss_pred ------------------CCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEEeCCCCCcEEEEEEECCCCCEE
Confidence 111223344556665 345556778999999 788888765 688888765 4589999
Q ss_pred EEEecCcEEEEEeCC-Ccc
Q 003171 473 WVGYMNGIVQVLDLE-GNL 490 (842)
Q Consensus 473 asGs~DgtIrlWD~~-g~~ 490 (842)
++|+ |++|+|||++ |+.
T Consensus 416 asg~-d~~i~iW~~~~gk~ 433 (435)
T 4e54_B 416 ASAM-GYHILIWSQQEART 433 (435)
T ss_dssp EEEC-SSEEEECCCC----
T ss_pred EEEc-CCcEEEEECCcCee
Confidence 9876 8899999987 554
|
| >3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A | Back alignment and structure |
|---|
Probab=99.91 E-value=1e-22 Score=225.44 Aligned_cols=261 Identities=8% Similarity=0.012 Sum_probs=178.2
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCCC-E-EEeeCCCcEEEEe
Q 003171 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-L-WSGSEGGGIKIWP 268 (842)
Q Consensus 191 ~~~V~~la~dpdg~~LaSGs~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L-~SgS~DgtIrvWd 268 (842)
..+|.|++|+|||++|++|+.|| +++|++.++ ..... .+...+..+++.+++. + ++|+.|++|+|||
T Consensus 19 ~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~--------~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iWd 87 (355)
T 3vu4_A 19 SNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPV--------AHIMS--QEMRHLSKVRMLHRTNYVAFVTGVKEVVHIWD 87 (355)
T ss_dssp CCCCCEEEECTTSSEEEEECSSE-EEEEEETTE--------EEEEE--EECSCCCEEEECTTSSEEEEECSSTTEEEEEE
T ss_pred CCceEEEEECCCCCEEEEEcCCE-EEEEecCCc--------ceeee--eecCCeEEEEEcCCCCEEEEEECCccEEEEEE
Confidence 77999999999999999999886 789998875 33333 2333577888888876 4 5788999999999
Q ss_pred CCCccceeecCCCceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcCCCCEEEEeCCCcEEEEEccCC-cEEEE
Q 003171 269 WEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGFLSFALWDARTR-ELLKV 347 (842)
Q Consensus 269 ~~t~~~~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s~~tI~lWD~~tg-~~l~~ 347 (842)
+.+++....+. ....+..+..+++ .+..+.+++|++||+.++ +.+.+
T Consensus 88 ~~~~~~~~~~~------------------------------~~~~v~~v~~~~~--~~~~~~~~~i~i~d~~~~~~~~~~ 135 (355)
T 3vu4_A 88 DVKKQDVSRIK------------------------------VDAPVKDLFLSRE--FIVVSYGDVISVFKFGNPWKRITD 135 (355)
T ss_dssp TTTTEEEEEEE------------------------------CSSCEEEEEECSS--EEEEEETTEEEEEESSTTCCBSSC
T ss_pred CCCCcEEEEEE------------------------------CCCceEEEEEcCC--EEEEEEcCEEEEEECCCCceeeEE
Confidence 97654322111 0234566666543 445556789999999987 55444
Q ss_pred eecCCceEeeeecccCCCcccccceEEEEEecCCCCccceeeeEeecCcceEE-ecCCcEEEEee---------------
Q 003171 348 FNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIM-GAADAVRRVAA--------------- 411 (842)
Q Consensus 348 l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~-g~~~~v~~v~~--------------- 411 (842)
+.. ......+++ ...+.. |..++..+++.
T Consensus 136 ~~~---~~~~~~~s~--------------------------------~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~ 180 (355)
T 3vu4_A 136 DIR---FGGVCEFSN--------------------------------GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQ 180 (355)
T ss_dssp CEE---EEEEEEEET--------------------------------TEEEEEESSCTTCEEEEECCC------------
T ss_pred ecc---CCceEEEEc--------------------------------cEEEEeCCCcCcEEEEEECCCCCcccccccccc
Confidence 432 101111111 000011 22222222221
Q ss_pred -------cCccccCCCceEEEEECCCCc-EEEEeCCCe-EEEEcC-CCCeeeeee-c-CCccEEEEEe--cCCEEEEEec
Q 003171 412 -------KGGFGDDNRRTEALTTSIDGM-IWTGGANGL-LLQWDP-NGNRLQDFQ-Y-LPFAVQCLCT--FGSQIWVGYM 477 (842)
Q Consensus 412 -------~g~~~~~~~~v~al~~s~dg~-l~Sgs~Dgt-IrlWD~-~g~~l~~l~-~-H~~~V~sls~--dG~~LasGs~ 477 (842)
...+..|...|.+++|+|||. |++|+.|++ |++||+ +++++.++. + |...|+++++ +|++|++|+.
T Consensus 181 ~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~~~~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~ 260 (355)
T 3vu4_A 181 QKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDGVLVREFRRGLDRADVVDMKWSTDGSKLAVVSD 260 (355)
T ss_dssp ------CCEEECCCSSCEEEEEECTTSSEEEEEETTCSEEEEEETTTCCEEEEEECTTCCSCEEEEEECTTSCEEEEEET
T ss_pred ccccCcccEEEEccCCceEEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCCCCCcEEEEEECCCCCEEEEEEC
Confidence 112456888999999999998 899999998 999999 799999998 6 9999999865 7899999999
Q ss_pred CcEEEEEeCC-Cc--ccccccc---------------------cccCEEEEE--eCCCEEEEEcCCCCeeeccccCCC
Q 003171 478 NGIVQVLDLE-GN--LLGGWVA---------------------HSSPVIKMA--VGAGYIFTLANHGGIRGWNVTSPG 529 (842)
Q Consensus 478 DgtIrlWD~~-g~--~i~~l~g---------------------H~~~V~sla--~dg~~l~S~S~DgtIrvWd~~~~~ 529 (842)
|++|+|||++ +. ....+.+ +...+..++ .|++.+++++.||.+++|++....
T Consensus 261 d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~d~~~l~~~~~dg~~~~~~~~~~~ 338 (355)
T 3vu4_A 261 KWTLHVFEIFNDQDNKRHALKGWINMKYFQSEWSLCNFKLSVDKHVRGCKIAWISESSLVVVWPHTRMIETFKVVFDD 338 (355)
T ss_dssp TCEEEEEESSCCSCCCSEETTTTEECCCCCCSSCSEEEECCCCTTCCCCEEEESSSSEEEEEETTTTEEEEEEEEEET
T ss_pred CCEEEEEEccCCCCcccccccceeeccccccccceeEEEeccCCCCCceEEEEeCCCCEEEEEeCCCeEEEEEEEcCC
Confidence 9999999985 22 1111111 111123344 578899999999999999986543
|
| >2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A | Back alignment and structure |
|---|
Probab=99.90 E-value=1.7e-22 Score=226.35 Aligned_cols=246 Identities=17% Similarity=0.140 Sum_probs=179.8
Q ss_pred eEEEEEcCCCC-EEEEEeCCCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEec-CCC-EEEeeCCCcEEEEeCC
Q 003171 194 VMCMVGDEASG-VVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISS-YGD-LWSGSEGGGIKIWPWE 270 (842)
Q Consensus 194 V~~la~dpdg~-~LaSGs~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~-dG~-L~SgS~DgtIrvWd~~ 270 (842)
..+++++|+.. ++++|+.||.|++|++.... ........+.+|.++|++++|+| ++. |++|+.||+|+|||+.
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~----~~~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~ 112 (402)
T 2aq5_A 37 SGFCAVNPKFMALICEASGGGAFLVLPLGKTG----RVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIP 112 (402)
T ss_dssp SCSEEECSSEEEEEBCCSSSCCEEEEETTCCE----ECCTTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECC
T ss_pred CCcEEECCCeEEEEEEEcCCCEEEEEECccCC----CCCCCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEcc
Confidence 34577888664 45578999999999986531 11123456789999999999999 777 7899999999999997
Q ss_pred CccceeecCCCceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcCCC-CEEEEeC-CCcEEEEEccCCcEEEEe
Q 003171 271 AIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSR-AKVWSAG-FLSFALWDARTRELLKVF 348 (842)
Q Consensus 271 t~~~~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~-~~v~s~s-~~tI~lWD~~tg~~l~~l 348 (842)
+......... ... .+.+| ...+.++++.+++ ..+++++ +++|++||+.+++++.++
T Consensus 113 ~~~~~~~~~~---~~~---------~~~~h----------~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~ 170 (402)
T 2aq5_A 113 DGGLVLPLRE---PVI---------TLEGH----------TKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTL 170 (402)
T ss_dssp TTCCSSCBCS---CSE---------EEECC----------SSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEE
T ss_pred CCCCccccCC---ceE---------EecCC----------CCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEE
Confidence 6431110000 000 11122 4568889998886 5777766 679999999988775544
Q ss_pred ecCCceEeeeecccCCCcccccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEeecCccccCCCceEEEEEC
Q 003171 349 NIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTS 428 (842)
Q Consensus 349 ~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~al~~s 428 (842)
.. ..|...|.+++++
T Consensus 171 ~~-----------------------------------------------------------------~~~~~~v~~~~~~ 185 (402)
T 2aq5_A 171 GP-----------------------------------------------------------------DVHPDTIYSVDWS 185 (402)
T ss_dssp CT-----------------------------------------------------------------TTCCSCEEEEEEC
T ss_pred ec-----------------------------------------------------------------CCCCCceEEEEEC
Confidence 10 1233446678899
Q ss_pred CCCc-EEEEeCCCeEEEEcC-CCCeeeee-ecCCcc-EEEEE--ecCCEEEEE---ecCcEEEEEeCC-Ccc-ccccc-c
Q 003171 429 IDGM-IWTGGANGLLLQWDP-NGNRLQDF-QYLPFA-VQCLC--TFGSQIWVG---YMNGIVQVLDLE-GNL-LGGWV-A 496 (842)
Q Consensus 429 ~dg~-l~Sgs~DgtIrlWD~-~g~~l~~l-~~H~~~-V~sls--~dG~~LasG---s~DgtIrlWD~~-g~~-i~~l~-g 496 (842)
|+|. |++|+.||+|++||+ +++++.++ .+|... +.++. ++|++|++| +.|+.|++||+. ++. +.... .
T Consensus 186 ~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~ 265 (402)
T 2aq5_A 186 RDGALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQELD 265 (402)
T ss_dssp TTSSCEEEEETTSEEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSCSEEEECC
T ss_pred CCCCEEEEEecCCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCCceEEecc
Confidence 9887 899999999999999 78888888 788875 66664 578899999 789999999987 333 33333 5
Q ss_pred cccCEEEEE--eCCCEEE-EEcCCCCeeeccccCCCC
Q 003171 497 HSSPVIKMA--VGAGYIF-TLANHGGIRGWNVTSPGP 530 (842)
Q Consensus 497 H~~~V~sla--~dg~~l~-S~S~DgtIrvWd~~~~~~ 530 (842)
|...|.+++ ++++.++ +++.|++|++|++....+
T Consensus 266 ~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~ 302 (402)
T 2aq5_A 266 TSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAP 302 (402)
T ss_dssp CCSSCEEEEEETTTTEEEEEETTCSCEEEEEECSSTT
T ss_pred CCCceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCCc
Confidence 777888887 4778886 666899999999987654
|
| >1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A | Back alignment and structure |
|---|
Probab=99.90 E-value=9.8e-22 Score=213.15 Aligned_cols=263 Identities=11% Similarity=0.115 Sum_probs=185.0
Q ss_pred eeEEEEec--CCEEEE-ecCCCEEEEeCCCCccccccccccccCCCCCCCCCCeeeeeecCCCeEEEEEcCCCC-EEEEE
Q 003171 134 FLRTIVCT--EEQLWA-GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASG-VVWSG 209 (842)
Q Consensus 134 ~~~~l~~~--~~~l~~-~~D~~vrvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~V~~la~dpdg~-~LaSG 209 (842)
.+.+++.. +..|++ +.|+.|++||+.+...... +.....+ ..+|.|++++|+++ +|++|
T Consensus 13 ~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~----------------~~~~~~~-~~~v~~~~~~~~~~~~l~~~ 75 (342)
T 1yfq_A 13 YISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVD----------------LLQSLRY-KHPLLCCNFIDNTDLQIYVG 75 (342)
T ss_dssp CEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEE----------------EEEEEEC-SSCEEEEEEEESSSEEEEEE
T ss_pred cEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCcccc----------------ceeeeec-CCceEEEEECCCCCcEEEEE
Confidence 45566654 445665 5699999999875431100 0111133 78999999999999 99999
Q ss_pred eCCCcEEEEEC-CCCccCCCCCcceeEEecc--cCCcEEEEEEecCCC-EEEeeCCCcEEEEeCCC---------cccee
Q 003171 210 HRDGRIMCWKM-NARLLDSDDGFGEVLSWQA--HRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEA---------IEKAL 276 (842)
Q Consensus 210 s~DGtIrlWdl-~~g~~~~~~~~~~~~~l~g--H~~~V~slafs~dG~-L~SgS~DgtIrvWd~~t---------~~~~l 276 (842)
+.||+|++||+ .++ ....+.+ |.+.|++++|+| +. |++|+.|++|++||+.+ .+...
T Consensus 76 ~~dg~i~~wd~~~~~---------~~~~~~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~ 145 (342)
T 1yfq_A 76 TVQGEILKVDLIGSP---------SFQALTNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSN 145 (342)
T ss_dssp ETTSCEEEECSSSSS---------SEEECBSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSS
T ss_pred cCCCeEEEEEeccCC---------ceEeccccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEcccccccccccccCCeee
Confidence 99999999999 875 3577888 999999999999 66 78999999999999865 21111
Q ss_pred ecCCCceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcCCCCEEEEeCCCcEEEEEccC-CcEE--EEeecCCc
Q 003171 277 SLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGFLSFALWDART-RELL--KVFNIDGQ 353 (842)
Q Consensus 277 ~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s~~tI~lWD~~t-g~~l--~~l~~~~~ 353 (842)
.+. ....+.+++..+++ .+.++.+++|++||+.+ +... .....+..
T Consensus 146 ~~~------------------------------~~~~v~~~~~~~~~-l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~ 194 (342)
T 1yfq_A 146 NTK------------------------------VKNKIFTMDTNSSR-LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKY 194 (342)
T ss_dssp SSS------------------------------SCCCEEEEEECSSE-EEEEESTTEEEEEESSCCTTCCCEEEECSCSS
T ss_pred EEe------------------------------eCCceEEEEecCCc-EEEEeCCCeEEEEECCccccccceeeecCCCC
Confidence 000 13456677776655 34344467999999988 5431 11111111
Q ss_pred eEeeeecccCCCcccccceEEEEEecCCCCccceeeeEee-cCcceEEecCCcEEEEee--cC----------ccccC--
Q 003171 354 IENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQ-RSRNAIMGAADAVRRVAA--KG----------GFGDD-- 418 (842)
Q Consensus 354 ~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~-~~~~~~~g~~~~v~~v~~--~g----------~~~~~-- 418 (842)
. ...+.+.+ ++...+++..++..+++. .+ .+..+
T Consensus 195 ~-------------------------------i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~ 243 (342)
T 1yfq_A 195 Q-------------------------------IRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRL 243 (342)
T ss_dssp C-------------------------------EEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCC
T ss_pred c-------------------------------eeEEEECCCCCCEEEEEecCCcEEEEEEcCCCcccccccceeeecccc
Confidence 1 11234444 444455566666555533 11 12223
Q ss_pred -------CCceEEEEECCCCc-EEEEeCCCeEEEEcC-CCCeeeeeecC-CccEEEEEecCCEEEEEecCcE-EEEEe
Q 003171 419 -------NRRTEALTTSIDGM-IWTGGANGLLLQWDP-NGNRLQDFQYL-PFAVQCLCTFGSQIWVGYMNGI-VQVLD 485 (842)
Q Consensus 419 -------~~~v~al~~s~dg~-l~Sgs~DgtIrlWD~-~g~~l~~l~~H-~~~V~sls~dG~~LasGs~Dgt-IrlWD 485 (842)
...|.+++++|++. |++|+.||.|++||+ +++++.++.+| ..+|++++++|++|++|+.||+ .+.|.
T Consensus 244 ~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~l~s~s~Dg~~~~~~~ 321 (342)
T 1yfq_A 244 NLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIACSDNILCLATSDDTFKTNAA 321 (342)
T ss_dssp CTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSSEEEEEEECSSEEEEEEECTHHHHCSS
T ss_pred cccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccHhHhhhhhcccCCCceEecCCCCeEEEEecCCccccccc
Confidence 33899999999987 899999999999999 68999999998 9999999999999999999998 65555
|
| >3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.90 E-value=1.5e-21 Score=212.68 Aligned_cols=266 Identities=12% Similarity=0.140 Sum_probs=178.6
Q ss_pred ceeEEEEecCC-----EEEE-ecCCCEEEEeCCCCccccccccccccCCCCCCCCCCeeeeeecCCCeEEEEEcCCCCEE
Q 003171 133 CFLRTIVCTEE-----QLWA-GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVV 206 (842)
Q Consensus 133 ~~~~~l~~~~~-----~l~~-~~D~~vrvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~V~~la~dpdg~~L 206 (842)
..+.+++...+ .|++ +.|+.|++||+.+..... ......| ..+|.+++|+|++++|
T Consensus 40 ~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~-----------------~~~~~~h-~~~v~~~~~~~~~~~l 101 (368)
T 3mmy_A 40 DSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTI-----------------PKAQQMH-TGPVLDVCWSDDGSKV 101 (368)
T ss_dssp SCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEE-----------------EEEEEEC-SSCEEEEEECTTSSEE
T ss_pred CceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCcee-----------------EEEeccc-cCCEEEEEECcCCCEE
Confidence 45777877643 4444 558999999997521110 0111234 7899999999999999
Q ss_pred EEEeCCCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEE--ecCCC-EEEeeCCCcEEEEeCCCccceeecCCCce
Q 003171 207 WSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCI--SSYGD-LWSGSEGGGIKIWPWEAIEKALSLKPEER 283 (842)
Q Consensus 207 aSGs~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slaf--s~dG~-L~SgS~DgtIrvWd~~t~~~~l~~~~~~~ 283 (842)
++|+.||+|++||+.++ ....+.+|.++|++++| ++++. |++|+.|++|++||+.+.+....+..
T Consensus 102 ~s~~~dg~v~iwd~~~~---------~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~--- 169 (368)
T 3mmy_A 102 FTASCDKTAKMWDLSSN---------QAIQIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQL--- 169 (368)
T ss_dssp EEEETTSEEEEEETTTT---------EEEEEEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEEEC---
T ss_pred EEEcCCCcEEEEEcCCC---------CceeeccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEEec---
Confidence 99999999999999985 34557889999999999 88887 78999999999999977543222211
Q ss_pred eeeEEEEeeceeecccceeccceeeeecCCEEEEEEcCCCCEEEEeCCCcEEEEEccCCcEEEEeecCCceEeeeecccC
Q 003171 284 HTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGFLSFALWDARTRELLKVFNIDGQIENRVDMSLL 363 (842)
Q Consensus 284 ~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~ 363 (842)
...+.++.... ...+.++.++.+++||+.+............
T Consensus 170 ---------------------------~~~~~~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~---------- 211 (368)
T 3mmy_A 170 ---------------------------PERCYCADVIY-PMAVVATAERGLIVYQLENQPSEFRRIESPL---------- 211 (368)
T ss_dssp ---------------------------SSCEEEEEEET-TEEEEEEGGGCEEEEECSSSCEEEEECCCSC----------
T ss_pred ---------------------------CCCceEEEecC-CeeEEEeCCCcEEEEEeccccchhhhccccc----------
Confidence 11222233321 2333444467899999987654222110000
Q ss_pred CCcccccceEEEEEecCCCCccceeeeEeecCc----ceEEecCCcEEEEeec--C-------ccccCCC----------
Q 003171 364 PDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSR----NAIMGAADAVRRVAAK--G-------GFGDDNR---------- 420 (842)
Q Consensus 364 ~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~----~~~~g~~~~v~~v~~~--g-------~~~~~~~---------- 420 (842)
......+.+..... ..+++..++..+++.. . .+..|..
T Consensus 212 -------------------~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (368)
T 3mmy_A 212 -------------------KHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQD 272 (368)
T ss_dssp -------------------SSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHHHHSEEEECSEEC----CCCEE
T ss_pred -------------------cCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCccccceeeeeeeccccccccccc
Confidence 00000111111111 1455666665555531 1 1222322
Q ss_pred --ceEEEEECCCCc-EEEEeCCCeEEEEcC-CCCeeeeeecCCccEEEEEe--cCCEEEEEecCcEEEEEe
Q 003171 421 --RTEALTTSIDGM-IWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQCLCT--FGSQIWVGYMNGIVQVLD 485 (842)
Q Consensus 421 --~v~al~~s~dg~-l~Sgs~DgtIrlWD~-~g~~l~~l~~H~~~V~sls~--dG~~LasGs~DgtIrlWD 485 (842)
.|.+++++|++. |++|+.||.|++||+ +++++.++.+|..+|+++++ +|++|++|+.|+..+.|+
T Consensus 273 ~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~s~d~~~~~~~ 343 (368)
T 3mmy_A 273 IYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTSEQLDQPISACCFNHNGNIFAYASSYDWSKGHE 343 (368)
T ss_dssp ECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSCEEEEEECTTSSCEEEEECCCSTTCGG
T ss_pred ccceEEEEEecCCCEEEEEccCCeEEEEECCCCcEEEEecCCCCCceEEEECCCCCeEEEEeccccccccc
Confidence 699999999986 899999999999999 78999999999999999865 789999999987555554
|
| >1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3 | Back alignment and structure |
|---|
Probab=99.90 E-value=2.6e-21 Score=214.72 Aligned_cols=251 Identities=9% Similarity=0.071 Sum_probs=186.1
Q ss_pred ecCCCEEEEeCCCCccccccccccccCCCCCCCCCCeeeeeecCCCeEEEEEcCCCCEE-EEEeCCCcEEEEECCCCccC
Q 003171 148 GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVV-WSGHRDGRIMCWKMNARLLD 226 (842)
Q Consensus 148 ~~D~~vrvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~V~~la~dpdg~~L-aSGs~DGtIrlWdl~~g~~~ 226 (842)
+.|+.|++||+++..... .+.+...+.|++++|+|+.| ++++.|++|++||+.++
T Consensus 9 ~~d~~v~v~d~~~~~~~~---------------------~~~~~~~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~--- 64 (391)
T 1l0q_A 9 SESDNISVIDVTSNKVTA---------------------TIPVGSNPMGAVISPDGTKVYVANAHSNDVSIIDTATN--- 64 (391)
T ss_dssp TTTTEEEEEETTTTEEEE---------------------EEECSSSEEEEEECTTSSEEEEEEGGGTEEEEEETTTT---
T ss_pred CCCCEEEEEECCCCeEEE---------------------EeecCCCcceEEECCCCCEEEEECCCCCeEEEEECCCC---
Confidence 458999999997653321 11224468999999999976 78889999999999887
Q ss_pred CCCCcceeEEecccCCcEEEEEEecCCC-E-EEeeCCCcEEEEeCCCccceeecCCCceeeeEEEEeeceeecccceecc
Q 003171 227 SDDGFGEVLSWQAHRGPVLSLCISSYGD-L-WSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVN 304 (842)
Q Consensus 227 ~~~~~~~~~~l~gH~~~V~slafs~dG~-L-~SgS~DgtIrvWd~~t~~~~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~ 304 (842)
+....+..|. .|.+++|+|+|+ | ++++.|++|++||+.+++....+.
T Consensus 65 -----~~~~~~~~~~-~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~------------------------- 113 (391)
T 1l0q_A 65 -----NVIATVPAGS-SPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVK------------------------- 113 (391)
T ss_dssp -----EEEEEEECSS-SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE-------------------------
T ss_pred -----eEEEEEECCC-CccceEECCCCCEEEEEECCCCEEEEEECCCCeEEEEEe-------------------------
Confidence 5566666555 999999999998 5 467788999999997653221110
Q ss_pred ceeeeecCCEEEEEEcCCCCEE-EEeC-CCcEEEEEccCCcEEEEeecCCceEeeeecccCCCcccccceEEEEEecCCC
Q 003171 305 GFSSILTSDIKNLLSDHSRAKV-WSAG-FLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKK 382 (842)
Q Consensus 305 ~~~~~~s~~v~~las~~~~~~v-~s~s-~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~ 382 (842)
....+..++.++++..+ ++++ ++.|++||+.+++++..+..+.
T Consensus 114 -----~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~------------------------------ 158 (391)
T 1l0q_A 114 -----TGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVGR------------------------------ 158 (391)
T ss_dssp -----CSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECCS------------------------------
T ss_pred -----CCCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEecCC------------------------------
Confidence 02245677788888766 4555 5789999999988765543211
Q ss_pred CccceeeeEeecCcceEEecCCcEEEEeecCccccCCCceEEEEECCCCc-E-EEEeCCCeEEEEcC-CCCeeeeeecCC
Q 003171 383 DKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGM-I-WTGGANGLLLQWDP-NGNRLQDFQYLP 459 (842)
Q Consensus 383 ~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~al~~s~dg~-l-~Sgs~DgtIrlWD~-~g~~l~~l~~H~ 459 (842)
.+..++++|+|. + ++++.|++|++||+ +++++..+. |.
T Consensus 159 --------------------------------------~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~-~~ 199 (391)
T 1l0q_A 159 --------------------------------------SPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVK-VE 199 (391)
T ss_dssp --------------------------------------SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE-CS
T ss_pred --------------------------------------CcceEEECCCCCEEEEEeCCCCEEEEEECCCCeEEEEEe-cC
Confidence 123567888886 5 56778899999999 677777665 45
Q ss_pred ccEEEEE--ecCCEEEEEe---cCcEEEEEeCC-CcccccccccccCEEEEE--eCCCEE-EEEcCCCCeeeccccCC
Q 003171 460 FAVQCLC--TFGSQIWVGY---MNGIVQVLDLE-GNLLGGWVAHSSPVIKMA--VGAGYI-FTLANHGGIRGWNVTSP 528 (842)
Q Consensus 460 ~~V~sls--~dG~~LasGs---~DgtIrlWD~~-g~~i~~l~gH~~~V~sla--~dg~~l-~S~S~DgtIrvWd~~~~ 528 (842)
..+.+++ ++|++|++++ .++.|++||++ ++++..+..|.. +.+++ ++++++ ++++.|+.|++||+.+.
T Consensus 200 ~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~-~~~~~~s~dg~~l~~s~~~d~~v~v~d~~~~ 276 (391)
T 1l0q_A 200 AAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVGPD-PAGIAVTPDGKKVYVALSFXNTVSVIDTATN 276 (391)
T ss_dssp SEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEECCSS-EEEEEECTTSSEEEEEETTTTEEEEEETTTT
T ss_pred CCccceEECCCCCEEEEEecCcCCCcEEEEECCCCeEEEEEecCCC-ccEEEEccCCCEEEEEcCCCCEEEEEECCCC
Confidence 6777775 4788999888 68999999987 677788877764 67766 468777 68899999999998763
|
| >2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.90 E-value=3.7e-22 Score=227.51 Aligned_cols=238 Identities=10% Similarity=0.025 Sum_probs=179.1
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEec---------------------------------
Q 003171 192 SSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQ--------------------------------- 238 (842)
Q Consensus 192 ~~V~~la~dpdg~~LaSGs~DGtIrlWdl~~g~~~~~~~~~~~~~l~--------------------------------- 238 (842)
.|+.|++++++|++|+++ .++.|++||+.+|. ..+.+..|.
T Consensus 5 ~p~~~v~~s~dg~~l~~~-~~~~i~v~d~~~g~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (450)
T 2vdu_B 5 HPLQNLLTSRDGSLVFAI-IKNCILSFKYQSPN-----HWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKS 78 (450)
T ss_dssp CCCCEEEECSSSSEEEEE-ETTEEEEEEEETTT-----EEEEEEEEECCC------------------------------
T ss_pred ccEEEEEecCCCCEEEEE-eCCeEEEEECCCCC-----cceeeeecCCccccccccccccchhhcccccccccccccccc
Confidence 388999999999977665 57899999998872 000233333
Q ss_pred ---------------------ccCCcEEEEEEecCCC-E-EEeeCCCcEEEEeCC--CccceeecCCCceeeeEEEEeec
Q 003171 239 ---------------------AHRGPVLSLCISSYGD-L-WSGSEGGGIKIWPWE--AIEKALSLKPEERHTAALIVERS 293 (842)
Q Consensus 239 ---------------------gH~~~V~slafs~dG~-L-~SgS~DgtIrvWd~~--t~~~~l~~~~~~~~~~~l~~~~s 293 (842)
+|.+.|++++|+|+|+ | ++|+.||+|+|||+. ++.....+.
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~-------------- 144 (450)
T 2vdu_B 79 NKGDSIKRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRK-------------- 144 (450)
T ss_dssp ---------------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEE--------------
T ss_pred CcCccccccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeee--------------
Confidence 4556899999999998 5 799999999999997 433211110
Q ss_pred eeecccceeccceeeeecCCEEEEEEcCCCCEEEEeC-CCcEEEEEccCCcEEEEeecCCceEeeeecccCCCcccccce
Q 003171 294 YIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEF 372 (842)
Q Consensus 294 ~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s-~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~ 372 (842)
.+ .....+.++++++++..|++++ ++.|++||+.+++.... .
T Consensus 145 -----~~--------~~~~~v~~~~~sp~~~~l~~~~~~g~v~~~~~~~~~~~~~------~------------------ 187 (450)
T 2vdu_B 145 -----RF--------CFSKRPNAISIAEDDTTVIIADKFGDVYSIDINSIPEEKF------T------------------ 187 (450)
T ss_dssp -----EE--------ECSSCEEEEEECTTSSEEEEEETTSEEEEEETTSCCCSSC------C------------------
T ss_pred -----cc--------cCCCCceEEEEcCCCCEEEEEeCCCcEEEEecCCcccccc------c------------------
Confidence 00 0134577888998888888877 47899999876543100 0
Q ss_pred EEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEeecCccccCCCceEEEEECCC---Cc-EEEEeCCCeEEEEcC-
Q 003171 373 KTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSID---GM-IWTGGANGLLLQWDP- 447 (842)
Q Consensus 373 ~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~al~~s~d---g~-l~Sgs~DgtIrlWD~- 447 (842)
. ..+..|...|.+++++|+ +. |++|+.|++|++||+
T Consensus 188 -------~--------------------------------~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~ 228 (450)
T 2vdu_B 188 -------Q--------------------------------EPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYP 228 (450)
T ss_dssp -------C--------------------------------CCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEES
T ss_pred -------c--------------------------------eeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECC
Confidence 0 012234566788899999 85 899999999999999
Q ss_pred CCCeeee-eecCCccEEEEEe-cCCEEEEEecCcEEEEEeCC-Cccccccccc-------------------------cc
Q 003171 448 NGNRLQD-FQYLPFAVQCLCT-FGSQIWVGYMNGIVQVLDLE-GNLLGGWVAH-------------------------SS 499 (842)
Q Consensus 448 ~g~~l~~-l~~H~~~V~sls~-dG~~LasGs~DgtIrlWD~~-g~~i~~l~gH-------------------------~~ 499 (842)
+++++.. +.+|...|+++++ +|++|++|+.|++|+|||+. ++++..+..| ..
T Consensus 229 ~~~~~~~~~~~h~~~v~~~~~sd~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (450)
T 2vdu_B 229 QCFIVDKWLFGHKHFVSSICCGKDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEF 308 (450)
T ss_dssp CTTCEEEECCCCSSCEEEEEECSTTEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCC
T ss_pred CCceeeeeecCCCCceEEEEECCCCEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceE
Confidence 6888887 5689999999877 68999999999999999987 7777666543 35
Q ss_pred CEEEEE--eCCCEEEEEc-CCCCeeeccc
Q 003171 500 PVIKMA--VGAGYIFTLA-NHGGIRGWNV 525 (842)
Q Consensus 500 ~V~sla--~dg~~l~S~S-~DgtIrvWd~ 525 (842)
.|.+|+ ++++++++++ .|++|++|++
T Consensus 309 ~v~~i~~~~~~~~l~~~~~~d~~i~iw~~ 337 (450)
T 2vdu_B 309 AVSKIIKSKNLPFVAFFVEATKCIIILEM 337 (450)
T ss_dssp CEEEEEECSSSSEEEEEETTCSEEEEEEE
T ss_pred EEEEEEEeCCCCEEEEEECCCCeEEEEEe
Confidence 688887 4788999888 8999999998
|
| >3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.90 E-value=9.5e-23 Score=223.69 Aligned_cols=229 Identities=8% Similarity=-0.020 Sum_probs=165.6
Q ss_pred CCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCCCEEEeeCCCcEEEEeCCCccceeecCC
Q 003171 201 EASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGDLWSGSEGGGIKIWPWEAIEKALSLKP 280 (842)
Q Consensus 201 pdg~~LaSGs~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~L~SgS~DgtIrvWd~~t~~~~l~~~~ 280 (842)
+++.+|+||+.||+|++||+.++ +.+..+. .+.|.+++|+|+ ++|||.|++|++|+............
T Consensus 46 ~d~~~l~sg~~Dg~v~iwd~~~~--------~~~~~~~--~~~v~~~~~~~~--~~s~s~D~~i~~w~~~~~~~~~~~~~ 113 (343)
T 3lrv_A 46 YDKWVCMCRCEDGALHFTQLKDS--------KTITTIT--TPNPRTGGEHPA--IISRGPCNRLLLLYPGNQITILDSKT 113 (343)
T ss_dssp EEEEEEEEEEETTEEEEEEESSS--------SCEEEEE--EECCCTTCCCCS--EEEECSTTEEEEEETTTEEEEEETTT
T ss_pred CCCCEEEEECCCCcEEEEECCCC--------cEEEEEe--cCCceeeeeCCc--eEEecCCCeEEEEEccCceEEeecCC
Confidence 46789999999999999999987 4555554 567888999997 99999999999999864221111111
Q ss_pred CceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcC--CCCEEEEeC-CCcEEEEEccCCcEEEEeecCCceEee
Q 003171 281 EERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDH--SRAKVWSAG-FLSFALWDARTRELLKVFNIDGQIENR 357 (842)
Q Consensus 281 ~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~--~~~~v~s~s-~~tI~lWD~~tg~~l~~l~~~~~~~~~ 357 (842)
.. .... + ...+...+.++++.+ ++..+++++ +++|++||+.+++++..+..+
T Consensus 114 ~~-~~~~------------~------~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~------ 168 (343)
T 3lrv_A 114 NK-VLRE------------I------EVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAK------ 168 (343)
T ss_dssp CC-EEEE------------E------ECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECCC------
T ss_pred cc-eeEE------------e------ecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecC------
Confidence 00 0000 0 000134688888888 888888776 689999999998874433110
Q ss_pred eecccCCCcccccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEeecCccccCCCceEEEEECCCCc-EEEE
Q 003171 358 VDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGM-IWTG 436 (842)
Q Consensus 358 ~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~al~~s~dg~-l~Sg 436 (842)
+...+.+++++|||. +++|
T Consensus 169 ------------------------------------------------------------~~~~i~~~~~~pdg~~lasg 188 (343)
T 3lrv_A 169 ------------------------------------------------------------SDVEYSSGVLHKDSLLLALY 188 (343)
T ss_dssp ------------------------------------------------------------SSCCCCEEEECTTSCEEEEE
T ss_pred ------------------------------------------------------------CCCceEEEEECCCCCEEEEE
Confidence 112255788999988 6889
Q ss_pred eCCCeEEEEcC-CCCee-eeeec-CCccEEEEEe--cCCEEEEEecCcEEEEEeCC-Cccccccc---ccccCEE--EEE
Q 003171 437 GANGLLLQWDP-NGNRL-QDFQY-LPFAVQCLCT--FGSQIWVGYMNGIVQVLDLE-GNLLGGWV---AHSSPVI--KMA 505 (842)
Q Consensus 437 s~DgtIrlWD~-~g~~l-~~l~~-H~~~V~sls~--dG~~LasGs~DgtIrlWD~~-g~~i~~l~---gH~~~V~--sla 505 (842)
+.||+|++||+ +++++ .++.+ |..+|+++++ +|.+|++|+ |++|+|||++ ++++.++. .|...+. +++
T Consensus 189 ~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (343)
T 3lrv_A 189 SPDGILDVYNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVEC-DQTVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYD 267 (343)
T ss_dssp CTTSCEEEEESSCTTSCCEECCCCTTSCEEEEEECTTSSEEEEEE-SSBEEEEETTSSTTCBSSCCCBC-----CCEEEE
T ss_pred cCCCEEEEEECCCCCCCccEEeccCCCCEEEEEEeCCCCEEEEEe-CCeEEEEEcCCCCcceeecccccccccccceEEE
Confidence 99999999999 67777 78888 9999999875 788999999 5599999997 55544444 3555554 365
Q ss_pred --eCCCEEEEEcC-CCCeeeccccC
Q 003171 506 --VGAGYIFTLAN-HGGIRGWNVTS 527 (842)
Q Consensus 506 --~dg~~l~S~S~-DgtIrvWd~~~ 527 (842)
++++++++++. |+.|++|++..
T Consensus 268 ~~~~g~~l~~~s~~d~~i~v~~~~~ 292 (343)
T 3lrv_A 268 IDDSGKNMIAYSNESNSLTIYKFDK 292 (343)
T ss_dssp ECTTSSEEEEEETTTTEEEEEEECT
T ss_pred ECCCCCEEEEecCCCCcEEEEEEcc
Confidence 57889999998 99999999754
|
| >4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A | Back alignment and structure |
|---|
Probab=99.90 E-value=6.9e-23 Score=229.95 Aligned_cols=262 Identities=14% Similarity=0.081 Sum_probs=154.0
Q ss_pred ecCCCEEEEeCCCCccccccccccccCCCCCCCCCCeeeeeecCCCeEEEEEcC--------CCCEEEEEeCCCcEEEEE
Q 003171 148 GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDE--------ASGVVWSGHRDGRIMCWK 219 (842)
Q Consensus 148 ~~D~~vrvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~V~~la~dp--------dg~~LaSGs~DGtIrlWd 219 (842)
+.|++||+||+.+...... ..... ...| .+.|.+|+|+| |+++|||||.|++||+||
T Consensus 108 ~~d~~v~lw~~~~~~~~~~------------~~~~~--~~gH-~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd 172 (393)
T 4gq1_A 108 CQDNTVRLIITKNETIITQ------------HVLGG--KSGH-HNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWR 172 (393)
T ss_dssp ETTSCEEEEEEETTEEEEE------------EEECT--TTSC-SSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEE
T ss_pred eCCCcEEEEECCCCcccee------------eeecc--cCCC-CCceEEEEEccccccccCCCCCEEEEEECCCeEEEEE
Confidence 5699999999876432210 00001 1134 88999999998 889999999999999999
Q ss_pred CCCCccCCCCCcceeEEecccCCcEEEEEEecCCC--EEEeeCCCcEEEEeCCCccceeecCCCceee--eEEEEeecee
Q 003171 220 MNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD--LWSGSEGGGIKIWPWEAIEKALSLKPEERHT--AALIVERSYI 295 (842)
Q Consensus 220 l~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~--L~SgS~DgtIrvWd~~t~~~~l~~~~~~~~~--~~l~~~~s~~ 295 (842)
+.++ .++..+.+|.++|.+|+|+|++. |++|+.|++||+||+.+++............ ..+.....
T Consensus 173 ~~~~--------~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~-- 242 (393)
T 4gq1_A 173 LTDE--------GPILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTL-- 242 (393)
T ss_dssp EETT--------EEEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESG--
T ss_pred CCCC--------ceeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccc--
Confidence 9876 56778889999999999999874 7899999999999998754332221110000 00000000
Q ss_pred ecccceeccceeeeecCCEEEEEE-cCCCCEEEEeC-CCcEEEEEccCCcEEEEeecCCceEeeeecccCCCcccccceE
Q 003171 296 DLRSHLSVNGFSSILTSDIKNLLS-DHSRAKVWSAG-FLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFK 373 (842)
Q Consensus 296 ~l~~~~~~~~~~~~~s~~v~~las-~~~~~~v~s~s-~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~ 373 (842)
.. ........+...+..+.. .+++..+++++ ++++++||+.+++....+..+........+.+
T Consensus 243 ---~~-~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~----------- 307 (393)
T 4gq1_A 243 ---PL-VNTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLP----------- 307 (393)
T ss_dssp ---GG-C------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC-------------------CCSC-----------
T ss_pred ---cc-eeeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEcc-----------
Confidence 00 000000011234455554 46777888877 67999999998877665543322111000000
Q ss_pred EEEEecCCCCccceeeeEeecCcceEEecCCcEEEEeecCccccCCCceEEEEECC-CCc-EEEEeCCCeEEEEcC-CCC
Q 003171 374 TKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSI-DGM-IWTGGANGLLLQWDP-NGN 450 (842)
Q Consensus 374 ~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~al~~s~-dg~-l~Sgs~DgtIrlWD~-~g~ 450 (842)
.. .. .......+..+.+++ ++. +++|+.||+|++||+ +++
T Consensus 308 --------------------~~-----------~~------~~~~~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~ 350 (393)
T 4gq1_A 308 --------------------NV-----------QG------ISLFPSLLGACPHPRYMDYFATAHSQHGLIQLINTYEKD 350 (393)
T ss_dssp --------------------SE-----------EE------ECSSCCSSCCEECSSCTTEEEEEETTTTEEEEEETTCTT
T ss_pred --------------------cc-----------cc------ccccCcceeEEEccCCCCEEEEEECCCCEEEEEECCCCc
Confidence 00 00 000001111122222 444 567888999999999 788
Q ss_pred eeeeeecCCccEEEEE--ecCCEEEEEecCcEEEEEeCC
Q 003171 451 RLQDFQYLPFAVQCLC--TFGSQIWVGYMNGIVQVLDLE 487 (842)
Q Consensus 451 ~l~~l~~H~~~V~sls--~dG~~LasGs~DgtIrlWD~~ 487 (842)
++..+.+|..+|++++ +||++||+|+.+| |.||.+.
T Consensus 351 ~~~~~~~~~~~V~svafspdG~~LA~as~~G-v~lvrL~ 388 (393)
T 4gq1_A 351 SNSIPIQLGMPIVDFCWHQDGSHLAIATEGS-VLLTRLM 388 (393)
T ss_dssp CCEEEEECSSCEEEEEECTTSSEEEEEESSE-EEEEEEG
T ss_pred EEEEecCCCCcEEEEEEcCCCCEEEEEeCCC-eEEEEEe
Confidence 9888899999999886 4899999998655 6677654
|
| >4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A | Back alignment and structure |
|---|
Probab=99.89 E-value=3e-21 Score=217.92 Aligned_cols=247 Identities=13% Similarity=0.149 Sum_probs=174.0
Q ss_pred ceeEEEEecC--CEEEE-ecCCCEEEEeCCCCccccccccccccCCCCCCCCCCeeeeeecCCCeEEEEEcCCCCEEEEE
Q 003171 133 CFLRTIVCTE--EQLWA-GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSG 209 (842)
Q Consensus 133 ~~~~~l~~~~--~~l~~-~~D~~vrvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~V~~la~dpdg~~LaSG 209 (842)
..+.+|+... +.|.+ +.|++|+|||+.+...... ...| ...|.|+.++ +.+|++|
T Consensus 148 ~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~~~-------------------~~~h-~~~v~~~s~~--~~~l~sg 205 (420)
T 4gga_A 148 EYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRN-------------------MTSH-SARVGSLSWN--SYILSSG 205 (420)
T ss_dssp CCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEE-------------------ECCC-SSCEEEEEEE--TTEEEEE
T ss_pred CcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcEEEE-------------------EeCC-CCceEEEeeC--CCEEEEE
Confidence 3567777653 35555 5699999999987543221 1223 6788888876 5899999
Q ss_pred eCCCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCCC-EEEeeCCCcEEEEeCCCccceeecCCCceeeeEE
Q 003171 210 HRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEKALSLKPEERHTAAL 288 (842)
Q Consensus 210 s~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~~t~~~~l~~~~~~~~~~~l 288 (842)
+.|+++++||..... ..+..+.+|...|..+.++|+|. |++++.|+.|++|+..+++...... ..
T Consensus 206 s~d~~i~~~d~~~~~-------~~~~~~~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~~~~~~~~------~~- 271 (420)
T 4gga_A 206 SRSGHIHHHDVRVAE-------HHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPL------QT- 271 (420)
T ss_dssp ETTSEEEEEETTSSS-------CEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCCSSCSCCS------EE-
T ss_pred eCCCceeEeeecccc-------eeeEEecccccceeeeeecCCCCeeeeeeccccceEEeeccccccceee------ee-
Confidence 999999999988753 56678899999999999999998 7899999999999997643211000 00
Q ss_pred EEeeceeecccceeccceeeeecCCEEEEEEcCCCC-EEEEe--C-CCcEEEEEccCCcEEEEeecCCceEeeeecccCC
Q 003171 289 IVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRA-KVWSA--G-FLSFALWDARTRELLKVFNIDGQIENRVDMSLLP 364 (842)
Q Consensus 289 ~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~-~v~s~--s-~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~ 364 (842)
... ....+..+++.+.+. .++++ + |++|++||+.+++++..+..+.+
T Consensus 272 --------~~~----------~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~~~~~~~----------- 322 (420)
T 4gga_A 272 --------FTQ----------HQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQ----------- 322 (420)
T ss_dssp --------ECC----------CSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEEEEECSSC-----------
T ss_pred --------ecc----------cCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccccceeeccccc-----------
Confidence 000 134567777766544 44443 2 67999999999988665543221
Q ss_pred CcccccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEeecCccccCCCceEEEEECCCCc-EEEEe--CCCe
Q 003171 365 DFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGM-IWTGG--ANGL 441 (842)
Q Consensus 365 ~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~al~~s~dg~-l~Sgs--~Dgt 441 (842)
+.++.+++++. +++++ .|++
T Consensus 323 ---------------------------------------------------------v~~~~~~~~~~~lv~~sg~~d~~ 345 (420)
T 4gga_A 323 ---------------------------------------------------------VCSILWSPHYKELISGHGFAQNQ 345 (420)
T ss_dssp ---------------------------------------------------------EEEEEEETTTTEEEEEECTTTCC
T ss_pred ---------------------------------------------------------eeeeeecCCCCeEEEEEecCCCE
Confidence 22344555554 55554 7899
Q ss_pred EEEEcC-CCCeeeeeecCCccEEEEEe--cCCEEEEEecCcEEEEEeCC-CcccccccccccCE
Q 003171 442 LLQWDP-NGNRLQDFQYLPFAVQCLCT--FGSQIWVGYMNGIVQVLDLE-GNLLGGWVAHSSPV 501 (842)
Q Consensus 442 IrlWD~-~g~~l~~l~~H~~~V~sls~--dG~~LasGs~DgtIrlWD~~-g~~i~~l~gH~~~V 501 (842)
|++||. +++++.++.+|..+|+++++ ||++|++|+.|++|+|||+. ..+.+....|...+
T Consensus 346 I~iwd~~~~~~v~~l~gH~~~V~~l~~spdg~~l~S~s~D~tvriWdv~~~~~~~~~~~~~~~~ 409 (420)
T 4gga_A 346 LVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFELDPARRREREKASA 409 (420)
T ss_dssp EEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCSCSSCC----------
T ss_pred EEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCCCCccchhhhccCCc
Confidence 999999 79999999999999999865 79999999999999999985 44555555554433
|
| >2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.89 E-value=1.9e-22 Score=232.69 Aligned_cols=122 Identities=10% Similarity=0.060 Sum_probs=89.6
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEecccCC-----cEEEEEEecCCC-EEEeeCCCcE
Q 003171 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRG-----PVLSLCISSYGD-LWSGSEGGGI 264 (842)
Q Consensus 191 ~~~V~~la~dpdg~~LaSGs~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~-----~V~slafs~dG~-L~SgS~DgtI 264 (842)
...|.+++|+|+|++||+++.||+|++|+.++ +...+. |.. .|.+++|||||+ |++|+.||+|
T Consensus 85 ~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~----------~l~~l~-~~~~~~~~sv~svafSPDG~~LAsgs~DGtV 153 (588)
T 2j04_A 85 VCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK----------MLTNLD-SKGNLSSRTYHCFEWNPIESSIVVGNEDGEL 153 (588)
T ss_dssp SCCEEEEEECSSSSCEEEEETTSCEEEEETTE----------EEEECC-CSSCSTTTCEEEEEECSSSSCEEEEETTSEE
T ss_pred CCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc----------eeeecc-CCCccccccEEEEEEcCCCCEEEEEcCCCEE
Confidence 56899999999999999999999999999533 445566 765 499999999998 8999999999
Q ss_pred EEEeCCCccc-eeecCCCceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcCCCCEEEEeCCCcEEEEEccCCc
Q 003171 265 KIWPWEAIEK-ALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGFLSFALWDARTRE 343 (842)
Q Consensus 265 rvWd~~t~~~-~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s~~tI~lWD~~tg~ 343 (842)
+|||+.++.. ..++ -.... ++++ ..+ +...|.+++.++++ .++++.|++|++||+.+++
T Consensus 154 kIWd~~~~~l~~~~~----i~l~t---------i~~~--~~g----h~~~V~sVawSPdg-Laass~D~tVrlWd~~~~~ 213 (588)
T 2j04_A 154 QFFSIRKNSENTPEF----YFESS---------IRLS--DAG----SKDWVTHIVWYEDV-LVAALSNNSVFSMTVSASS 213 (588)
T ss_dssp EEEECCCCTTTCCCC----EEEEE---------EECS--CTT----CCCCEEEEEEETTE-EEEEETTCCEEEECCCSSS
T ss_pred EEEECCCCccccccc----eeeee---------eecc--ccc----ccccEEEEEEcCCc-EEEEeCCCeEEEEECCCCc
Confidence 9999976421 0000 00000 0000 000 13468889999888 6666778999999998766
|
| >3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.89 E-value=8.5e-22 Score=215.90 Aligned_cols=240 Identities=11% Similarity=0.133 Sum_probs=171.6
Q ss_pred eeEEEEec--CCEEEEe-cCCCEEEEeCCCCccccccccccccCCCCCCCCCCeeeeeecCCCeEEEEEcCC--CCEEEE
Q 003171 134 FLRTIVCT--EEQLWAG-GENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEA--SGVVWS 208 (842)
Q Consensus 134 ~~~~l~~~--~~~l~~~-~D~~vrvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~V~~la~dpd--g~~LaS 208 (842)
.+.+++.. +..|.++ .|+.|+|||+...... . ......| ..+|.|++|+++ +++|++
T Consensus 13 ~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~-~----------------~~~~~~h-~~~v~~~~~~~~~~~~~l~s 74 (379)
T 3jrp_A 13 LIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHK-L----------------IDTLTGH-EGPVWRVDWAHPKFGTILAS 74 (379)
T ss_dssp CEEEEEECSSSSEEEEEETTSCEEEEEEETTEEE-E----------------EEEECCC-SSCEEEEEECCGGGCSEEEE
T ss_pred cEEEEEEcCCCCEEEEEECCCcEEEEecCCCcce-e----------------eeEecCC-CCcEEEEEeCCCCCCCEEEE
Confidence 46677765 4455554 6999999998632110 0 0011123 789999999987 999999
Q ss_pred EeCCCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecC--CC-EEEeeCCCcEEEEeCCCccceeecCCCceee
Q 003171 209 GHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSY--GD-LWSGSEGGGIKIWPWEAIEKALSLKPEERHT 285 (842)
Q Consensus 209 Gs~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~d--G~-L~SgS~DgtIrvWd~~t~~~~l~~~~~~~~~ 285 (842)
|+.||+|++||+.++. ......+.+|...|++++|+|+ +. |++|+.|++|++||+.+........
T Consensus 75 ~~~dg~v~iwd~~~~~------~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~------ 142 (379)
T 3jrp_A 75 CSYDGKVLIWKEENGR------WSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPII------ 142 (379)
T ss_dssp EETTSCEEEEEEETTE------EEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEE------
T ss_pred eccCCEEEEEEcCCCc------eeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEE------
Confidence 9999999999998861 1256778899999999999999 76 7899999999999997642211000
Q ss_pred eEEEEeeceeecccceeccceeeeecCCEEEEEEcC-------------CCCEEEEeC-CCcEEEEEccCCcEEEEeecC
Q 003171 286 AALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDH-------------SRAKVWSAG-FLSFALWDARTRELLKVFNID 351 (842)
Q Consensus 286 ~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~-------------~~~~v~s~s-~~tI~lWD~~tg~~l~~l~~~ 351 (842)
+.++ ...+.+++..+ ++..+++++ +++|++||++++.....+.
T Consensus 143 -----------~~~~----------~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-- 199 (379)
T 3jrp_A 143 -----------IDAH----------AIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLE-- 199 (379)
T ss_dssp -----------EECC----------TTCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTEEEEE--
T ss_pred -----------ecCC----------CCceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeE--
Confidence 0011 34566677766 467777766 6799999987654211100
Q ss_pred CceEeeeecccCCCcccccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEeecCccccCCCceEEEEECCC-
Q 003171 352 GQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSID- 430 (842)
Q Consensus 352 ~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~al~~s~d- 430 (842)
..+..|...|.+++++|+
T Consensus 200 -------------------------------------------------------------~~~~~h~~~v~~~~~sp~~ 218 (379)
T 3jrp_A 200 -------------------------------------------------------------STLEGHSDWVRDVAWSPTV 218 (379)
T ss_dssp -------------------------------------------------------------EEECCCSSCEEEEEECCCC
T ss_pred -------------------------------------------------------------EEEecccCcEeEEEECCCC
Confidence 002245566788999998
Q ss_pred --Cc-EEEEeCCCeEEEEcC-CCC---eee--eeecCCccEEEEEe--cCCEEEEEecCcEEEEEeCC
Q 003171 431 --GM-IWTGGANGLLLQWDP-NGN---RLQ--DFQYLPFAVQCLCT--FGSQIWVGYMNGIVQVLDLE 487 (842)
Q Consensus 431 --g~-l~Sgs~DgtIrlWD~-~g~---~l~--~l~~H~~~V~sls~--dG~~LasGs~DgtIrlWD~~ 487 (842)
+. |++|+.||+|++||+ .++ ... ....|...|+++++ +|++|++|+.||.|++||+.
T Consensus 219 ~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~ 286 (379)
T 3jrp_A 219 LLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKEN 286 (379)
T ss_dssp SSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEESSSSEEEEEEE
T ss_pred CCCCeEEEEeCCCEEEEEeCCCCCccceeeeeccccCCCcEEEEEEcCCCCEEEEecCCCcEEEEeCC
Confidence 66 899999999999999 443 222 23348889998864 78999999999999999986
|
| >4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.89 E-value=3.1e-21 Score=206.62 Aligned_cols=232 Identities=14% Similarity=0.170 Sum_probs=161.4
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEE--ecccCCcEEEEEEecCCC-EEEeeCCCcEEEEeCC
Q 003171 194 VMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLS--WQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWE 270 (842)
Q Consensus 194 V~~la~dpdg~~LaSGs~DGtIrlWdl~~g~~~~~~~~~~~~~--l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~~ 270 (842)
..||++|+++ +||+|. |++||+||+.++ +.+.. +.+|...|++|+|+|+|+ |+|||.||+|++|+++
T Consensus 28 ~~~l~WS~~~-~lAvg~-D~tV~iWd~~tg--------~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~ 97 (318)
T 4ggc_A 28 LNLVDWSSGN-VLAVAL-DNSVYLWSASSG--------DILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQ 97 (318)
T ss_dssp CBCEEECTTS-EEEEEE-TTEEEEEETTTC--------CEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETT
T ss_pred ceEEEECCCC-EEEEEe-CCEEEEEECCCC--------CEEEEEEecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecC
Confidence 4679999875 888775 999999999997 44444 457889999999999998 7899999999999998
Q ss_pred CccceeecCCCceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcCCCCEEEEeC-CCcEEEEEccCCcE-EEEe
Q 003171 271 AIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTREL-LKVF 348 (842)
Q Consensus 271 t~~~~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s-~~tI~lWD~~tg~~-l~~l 348 (842)
+++....+.. | ...+.++.. .+..+++++ ++.+++|+..++.. +..+
T Consensus 98 ~~~~~~~~~~-------------------h----------~~~~~~~~~--~~~~l~s~~~~~~~~~~~~~~~~~~~~~~ 146 (318)
T 4ggc_A 98 QQKRLRNMTS-------------------H----------SARVGSLSW--NSYILSSGSRSGHIHHHDVRVAEHHVATL 146 (318)
T ss_dssp TTEEEEEEEC-------------------C----------SSCEEEEEE--ETTEEEEEETTSEEEEEETTSSSCEEEEE
T ss_pred CceeEEEecC-------------------c----------cceEEEeec--CCCEEEEEecCCceEeeecCCCceeEEEE
Confidence 7543322211 1 112222222 344566655 46788888765432 1111
Q ss_pred ecCCceEeeeecccCCCcccccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEeecCccccCCCceEEEEEC
Q 003171 349 NIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTS 428 (842)
Q Consensus 349 ~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~al~~s 428 (842)
..|...+..+.++
T Consensus 147 -------------------------------------------------------------------~~~~~~~~~~~~~ 159 (318)
T 4ggc_A 147 -------------------------------------------------------------------SGHSQEVCGLRWA 159 (318)
T ss_dssp -------------------------------------------------------------------ECCSSCEEEEEEC
T ss_pred -------------------------------------------------------------------cCccCceEEEEEc
Confidence 1233345566677
Q ss_pred CCCc-EEEEeCCCeEEEEcC-CCC----eeeeeecCCccEEEEEe--cC-CE--EEEEecCcEEEEEeCCCccccccccc
Q 003171 429 IDGM-IWTGGANGLLLQWDP-NGN----RLQDFQYLPFAVQCLCT--FG-SQ--IWVGYMNGIVQVLDLEGNLLGGWVAH 497 (842)
Q Consensus 429 ~dg~-l~Sgs~DgtIrlWD~-~g~----~l~~l~~H~~~V~sls~--dG-~~--LasGs~DgtIrlWD~~g~~i~~l~gH 497 (842)
+++. +++++.|++|++||+ +++ .+.....|...|.++.. ++ .. +++|+.+++|++||...........|
T Consensus 160 ~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~~~ 239 (318)
T 4ggc_A 160 PDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDA 239 (318)
T ss_dssp TTSSEEEEEETTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEEEEC
T ss_pred CCCCEEEEEecCcceeEEECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEecccccccccccc
Confidence 7776 889999999999999 554 33455568888998865 33 33 45677899999999885444444567
Q ss_pred ccCEEEEE--eCCCEEEEE--cCCCCeeeccccCCCCCcc
Q 003171 498 SSPVIKMA--VGAGYIFTL--ANHGGIRGWNVTSPGPLDS 533 (842)
Q Consensus 498 ~~~V~sla--~dg~~l~S~--S~DgtIrvWd~~~~~~~d~ 533 (842)
...|..+. ++++.++++ +.|++|++||+.+..++..
T Consensus 240 ~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~~~~~ 279 (318)
T 4ggc_A 240 HSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAE 279 (318)
T ss_dssp SSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEE
T ss_pred eeeeeeeeecccccceEEEEEcCCCEEEEEECCCCcEEEE
Confidence 77787766 467776654 4899999999887655443
|
| >3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.89 E-value=3.2e-22 Score=219.45 Aligned_cols=260 Identities=7% Similarity=0.045 Sum_probs=172.9
Q ss_pred CCEEEE-ecCCCEEEEeCCCCccccccccccccCCCCCCCCCCeeeeeecCCCeEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 003171 142 EEQLWA-GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGHRDGRIMCWKM 220 (842)
Q Consensus 142 ~~~l~~-~~D~~vrvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~V~~la~dpdg~~LaSGs~DGtIrlWdl 220 (842)
+..+.+ +.|++|++||+.+..... .+. ..+|.++.++|+ ++||+.|++|++|+.
T Consensus 48 ~~~l~sg~~Dg~v~iwd~~~~~~~~---------------------~~~-~~~v~~~~~~~~---~~s~s~D~~i~~w~~ 102 (343)
T 3lrv_A 48 KWVCMCRCEDGALHFTQLKDSKTIT---------------------TIT-TPNPRTGGEHPA---IISRGPCNRLLLLYP 102 (343)
T ss_dssp EEEEEEEEETTEEEEEEESSSSCEE---------------------EEE-EECCCTTCCCCS---EEEECSTTEEEEEET
T ss_pred CCEEEEECCCCcEEEEECCCCcEEE---------------------EEe-cCCceeeeeCCc---eEEecCCCeEEEEEc
Confidence 334444 569999999997654321 112 346778888887 999999999999987
Q ss_pred CCCcc-CCCCCcceeEEe-cccCCcEEEEEEec--CCC-EEEeeCCCcEEEEeCCCccceeecCCCceeeeEEEEeecee
Q 003171 221 NARLL-DSDDGFGEVLSW-QAHRGPVLSLCISS--YGD-LWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYI 295 (842)
Q Consensus 221 ~~g~~-~~~~~~~~~~~l-~gH~~~V~slafs~--dG~-L~SgS~DgtIrvWd~~t~~~~l~~~~~~~~~~~l~~~~s~~ 295 (842)
..... -+....+.+..+ .+|.++|.+++|+| +++ |+||+.||+|++||+.+++.......
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~--------------- 167 (343)
T 3lrv_A 103 GNQITILDSKTNKVLREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSA--------------- 167 (343)
T ss_dssp TTEEEEEETTTCCEEEEEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECC---------------
T ss_pred cCceEEeecCCcceeEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEec---------------
Confidence 64200 000000223333 37889999999999 887 78999999999999976543111100
Q ss_pred ecccceeccceeeeecCCEEEEEEcCCCCEEEEeC-CCcEEEEEccCCcEE-EEeecCCceEeeeecccCCCcccccceE
Q 003171 296 DLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELL-KVFNIDGQIENRVDMSLLPDFAMEDEFK 373 (842)
Q Consensus 296 ~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s-~~tI~lWD~~tg~~l-~~l~~~~~~~~~~~~s~~~~~~~~~~~~ 373 (842)
+ ....+.++++++++..+++++ +++|++||+++++.+ ..+..
T Consensus 168 ----~---------~~~~i~~~~~~pdg~~lasg~~dg~i~iwd~~~~~~~~~~~~~----------------------- 211 (343)
T 3lrv_A 168 ----K---------SDVEYSSGVLHKDSLLLALYSPDGILDVYNLSSPDQASSRFPV----------------------- 211 (343)
T ss_dssp ----C---------SSCCCCEEEECTTSCEEEEECTTSCEEEEESSCTTSCCEECCC-----------------------
T ss_pred ----C---------CCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCCCCccEEec-----------------------
Confidence 0 022467788888888998866 689999999887642 22210
Q ss_pred EEEEecCCCCccceeeeEeecCcceEEecCCcEEEEeecCccccCCCceEEEEECCCCc-EEEEeCCCeEEEEcC-CCCe
Q 003171 374 TKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGM-IWTGGANGLLLQWDP-NGNR 451 (842)
Q Consensus 374 ~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~al~~s~dg~-l~Sgs~DgtIrlWD~-~g~~ 451 (842)
.|...|.+++|+|+|. |++|+ |++|++||+ ++++
T Consensus 212 -------------------------------------------~h~~~v~~l~fs~~g~~l~s~~-~~~v~iwd~~~~~~ 247 (343)
T 3lrv_A 212 -------------------------------------------DEEAKIKEVKFADNGYWMVVEC-DQTVVCFDLRKDVG 247 (343)
T ss_dssp -------------------------------------------CTTSCEEEEEECTTSSEEEEEE-SSBEEEEETTSSTT
T ss_pred -------------------------------------------cCCCCEEEEEEeCCCCEEEEEe-CCeEEEEEcCCCCc
Confidence 1445677899999998 67888 559999999 6766
Q ss_pred eeeeec---CCccEE--EE--EecCCEEEEEec-CcEEEEEeCCCcccccccccccCEEEEE--e---CCCEEEEEcCCC
Q 003171 452 LQDFQY---LPFAVQ--CL--CTFGSQIWVGYM-NGIVQVLDLEGNLLGGWVAHSSPVIKMA--V---GAGYIFTLANHG 518 (842)
Q Consensus 452 l~~l~~---H~~~V~--sl--s~dG~~LasGs~-DgtIrlWD~~g~~i~~l~gH~~~V~sla--~---dg~~l~S~S~Dg 518 (842)
++++.. |...+. ++ .++|++|++|+. |+.|+||+.+... ..|.. .++..+. . +.+.+++++.|+
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~s~~d~~i~v~~~~~~~-~~~~~--~~~~~~~~~~~~~~~~~l~~~~~d~ 324 (343)
T 3lrv_A 248 TLAYPTYTIPEFKTGTVTYDIDDSGKNMIAYSNESNSLTIYKFDKKT-KNWTK--DEESALCLQSDTADFTDMDVVCGDG 324 (343)
T ss_dssp CBSSCCCBC-----CCEEEEECTTSSEEEEEETTTTEEEEEEECTTT-CSEEE--EEEEECCC----CCCCEEEEEEETT
T ss_pred ceeecccccccccccceEEEECCCCCEEEEecCCCCcEEEEEEcccc-cceEe--cCceeEecCccccccceeEEEecCC
Confidence 655543 444443 34 457999999998 9999999985211 11211 3344443 2 556888889999
Q ss_pred Ceeecc
Q 003171 519 GIRGWN 524 (842)
Q Consensus 519 tIrvWd 524 (842)
+++++-
T Consensus 325 ~~~~~~ 330 (343)
T 3lrv_A 325 GIAAIL 330 (343)
T ss_dssp EEEEEE
T ss_pred ceEEEE
Confidence 988875
|
| >3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=99.89 E-value=2.4e-21 Score=218.05 Aligned_cols=266 Identities=11% Similarity=0.059 Sum_probs=193.1
Q ss_pred EEec-CCEEEEe--cCCCEEEEeCCCCccccccccccccCCCCCCCCCCeeeeeecCCCeEEEEEcCCCCEEEEEeCCCc
Q 003171 138 IVCT-EEQLWAG--GENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGHRDGR 214 (842)
Q Consensus 138 l~~~-~~~l~~~--~D~~vrvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~V~~la~dpdg~~LaSGs~DGt 214 (842)
++.+ ++.++++ .|+.|++||+.+...... .....+ ..+ ...|.+++++|+++++++++.|++
T Consensus 128 ~~~s~~~~~~~~~~~~~~i~~~d~~~g~~~~~------------~~~~~~--~~~-~~~v~~~~~~~~~~~~~s~~~d~~ 192 (433)
T 3bws_A 128 VRFIDNTRLAIPLLEDEGMDVLDINSGQTVRL------------SPPEKY--KKK-LGFVETISIPEHNELWVSQMQANA 192 (433)
T ss_dssp CEESSSSEEEEEBTTSSSEEEEETTTCCEEEE------------CCCHHH--HTT-CCEEEEEEEGGGTEEEEEEGGGTE
T ss_pred EEEeCCCeEEEEeCCCCeEEEEECCCCeEeee------------cCcccc--ccc-CCceeEEEEcCCCEEEEEECCCCE
Confidence 3444 4466653 367899999976543211 000001 112 668999999999999999999999
Q ss_pred EEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCCC-E-EEeeCCCcEEEEeCCCccceeecCCCceeeeEEEEee
Q 003171 215 IMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-L-WSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVER 292 (842)
Q Consensus 215 IrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L-~SgS~DgtIrvWd~~t~~~~l~~~~~~~~~~~l~~~~ 292 (842)
|++||+.++ +....+.+|...+.+++|+|+|+ + ++++.|++|++||+.+++....+..
T Consensus 193 v~~~d~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~------------ 252 (433)
T 3bws_A 193 VHVFDLKTL--------AYKATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRKTDK------------ 252 (433)
T ss_dssp EEEEETTTC--------CEEEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEECCC------------
T ss_pred EEEEECCCc--------eEEEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEEecC------------
Confidence 999999886 56777889999999999999997 5 4677899999999976432211110
Q ss_pred ceeecccceeccceeeeecCCEEEEEEcCCCCEEEEeC---------CCcEEEEEccCCcEEEEeecCCceEeeeecccC
Q 003171 293 SYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG---------FLSFALWDARTRELLKVFNIDGQIENRVDMSLL 363 (842)
Q Consensus 293 s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s---------~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~ 363 (842)
...+..++.++++..+++++ ++.|++||+.+++++..+..
T Consensus 253 ------------------~~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~~------------- 301 (433)
T 3bws_A 253 ------------------IGLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTIGP------------- 301 (433)
T ss_dssp ------------------CSEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEEEE-------------
T ss_pred ------------------CCCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCcEEeeccC-------------
Confidence 11255677777777777765 46899999998876443210
Q ss_pred CCcccccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEeecCccccCCCceEEEEECCCCc-E-EEEeCCCe
Q 003171 364 PDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGM-I-WTGGANGL 441 (842)
Q Consensus 364 ~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~al~~s~dg~-l-~Sgs~Dgt 441 (842)
...+..++++|+|. + ++++.|+.
T Consensus 302 -------------------------------------------------------~~~~~~~~~~~~g~~l~~~~~~~~~ 326 (433)
T 3bws_A 302 -------------------------------------------------------PGNKRHIVSGNTENKIYVSDMCCSK 326 (433)
T ss_dssp -------------------------------------------------------EECEEEEEECSSTTEEEEEETTTTE
T ss_pred -------------------------------------------------------CCCcceEEECCCCCEEEEEecCCCE
Confidence 01133567888885 4 56688999
Q ss_pred EEEEcC-CCCeeeeeecCCccEEEEEe--cCCEEEEEec---------------CcEEEEEeCC-CcccccccccccCEE
Q 003171 442 LLQWDP-NGNRLQDFQYLPFAVQCLCT--FGSQIWVGYM---------------NGIVQVLDLE-GNLLGGWVAHSSPVI 502 (842)
Q Consensus 442 IrlWD~-~g~~l~~l~~H~~~V~sls~--dG~~LasGs~---------------DgtIrlWD~~-g~~i~~l~gH~~~V~ 502 (842)
|++||+ +++++..+. +...+.++++ +|++|++++. ||.|++||++ ++.+..+.++ ..+.
T Consensus 327 v~v~d~~~~~~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~~~-~~~~ 404 (433)
T 3bws_A 327 IEVYDLKEKKVQKSIP-VFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWEAG-NQPT 404 (433)
T ss_dssp EEEEETTTTEEEEEEE-CSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEEECS-SSEE
T ss_pred EEEEECCCCcEEEEec-CCCCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCCcEEEEecCC-CCCc
Confidence 999999 677777775 6777888764 6889998886 5799999986 6777777664 5688
Q ss_pred EEE--eCCCEEEEEc-CCCCeeecccc
Q 003171 503 KMA--VGAGYIFTLA-NHGGIRGWNVT 526 (842)
Q Consensus 503 sla--~dg~~l~S~S-~DgtIrvWd~~ 526 (842)
+++ ++++++++++ .|++|++|++.
T Consensus 405 ~~~~s~dg~~l~~~~~~d~~i~v~~~~ 431 (433)
T 3bws_A 405 GLDVSPDNRYLVISDFLDHQIRVYRRD 431 (433)
T ss_dssp EEEECTTSCEEEEEETTTTEEEEEEET
T ss_pred eEEEcCCCCEEEEEECCCCeEEEEEec
Confidence 887 4788888776 59999999975
|
| >2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A | Back alignment and structure |
|---|
Probab=99.89 E-value=4.6e-22 Score=216.72 Aligned_cols=206 Identities=11% Similarity=0.056 Sum_probs=129.8
Q ss_pred CCCeEEEEEcCC----CCEEEEEeC--------------------CCcEEEEECCC-CccCCCCCcceeEEecccCCcEE
Q 003171 191 VSSVMCMVGDEA----SGVVWSGHR--------------------DGRIMCWKMNA-RLLDSDDGFGEVLSWQAHRGPVL 245 (842)
Q Consensus 191 ~~~V~~la~dpd----g~~LaSGs~--------------------DGtIrlWdl~~-g~~~~~~~~~~~~~l~gH~~~V~ 245 (842)
.+.|.+|+++|+ ++++++++. |++|++|++.. | +.+.++.+|...|+
T Consensus 111 ~~~v~sla~spd~~~~~~~l~s~g~~~~v~~l~~g~lv~ss~~g~d~~V~~~~~s~dG--------~~~~s~~~~~~~v~ 182 (356)
T 2w18_A 111 IREIRALFCSSDDESEKQVLLKSGNIKAVLGLTKRRLVSSSGTLSDQQVEVMTFAEDG--------GGKENQFLMPPEET 182 (356)
T ss_dssp EEEEEEECC------CCEEEEEEEEEEEEEEETTTEEEEEESSSTTCEEEEEEECTTS--------CEEEEEEECCCSSC
T ss_pred ccceEEEEECCCccccccEEEeCCCeEEEEecCCCcEEEecccCCCCcEEEEEECCCC--------ceeeeeccCCCcee
Confidence 457889999999 888888664 88888888844 4 55667788988899
Q ss_pred EEEEec---CCC-EEEeeCCCcEEEEeCCCccceeecCCCceeeeEEEEeeceeecccceeccce---eeeecCCEEEEE
Q 003171 246 SLCISS---YGD-LWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGF---SSILTSDIKNLL 318 (842)
Q Consensus 246 slafs~---dG~-L~SgS~DgtIrvWd~~t~~~~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~---~~~~s~~v~~la 318 (842)
.++|++ ++. |+|||.|++|||||+.+++...++..+.. ....+ .+.+. ...++.
T Consensus 183 ~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~------------------~v~~v~~vafSpd-G~~lvs 243 (356)
T 2w18_A 183 ILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDS------------------YQASVCHKAYSEM-GLLFIV 243 (356)
T ss_dssp EEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC---------------------CCCEEEEEEET-TEEEEE
T ss_pred eEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCc------------------ceeeeEEEEECCC-CCEEEE
Confidence 999998 555 78999999999999998765444322111 11111 12121 122222
Q ss_pred EcCCCC--EEEEeC-CCcEEEEEccCCcEEEEeecCCceEeeeecccCCCcccccceEEEEEecCCCCccceeeeEeecC
Q 003171 319 SDHSRA--KVWSAG-FLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRS 395 (842)
Q Consensus 319 s~~~~~--~v~s~s-~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~ 395 (842)
.+++.. .+++++ +++|++||..+++++.++... + + .
T Consensus 244 ~s~~~~~w~laSGs~D~tIklWd~~tgk~l~v~~~~--------~-p-----------------~--------------- 282 (356)
T 2w18_A 244 LSHPCAKESESLRSPVFQLIVINPKTTLSVGVMLYC--------L-P-----------------P--------------- 282 (356)
T ss_dssp EC------------CCEEEEEEETTTTEEEEEEEEC--------C-C-----------------T---------------
T ss_pred eccCCCcceeeccCCCcEEEEEECCCCEEEEEEEee--------c-c-----------------C---------------
Confidence 222111 245565 579999999999887665310 0 0 0
Q ss_pred cceEEecCCcEEEEeecCccccCCCceEEEEECCCCcEEEEeCCCeEEEEcC-CCCeeeeeecCCccEE-E--EEecCCE
Q 003171 396 RNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGMIWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQ-C--LCTFGSQ 471 (842)
Q Consensus 396 ~~~~~g~~~~v~~v~~~g~~~~~~~~v~al~~s~dg~l~Sgs~DgtIrlWD~-~g~~l~~l~~H~~~V~-s--ls~dG~~ 471 (842)
+|...+.+..++ +..+++|+.|++|||||+ +|+++++|.+|...|. + +++||++
T Consensus 283 ---------------------Gh~~~~lsg~~s-g~~lASgS~DgTIkIWDl~tGk~l~tL~gH~~~vvs~vafSPDG~~ 340 (356)
T 2w18_A 283 ---------------------GQAGRFLEGDVK-DHCAAAILTSGTIAIWDLLLGQCTALLPPVSDQHWSFVKWSGTDSH 340 (356)
T ss_dssp ---------------------TCCCCEEEEEEE-TTEEEEEETTSCEEEEETTTCSEEEEECCC--CCCCEEEECSSSSE
T ss_pred ---------------------CCcceeEccccC-CCEEEEEcCCCcEEEEECCCCcEEEEecCCCCCeEEEEEECCCCCE
Confidence 000000011111 223789999999999999 7999999999987654 3 4568999
Q ss_pred EEEEecCcEEEEEeC
Q 003171 472 IWVGYMNGIVQVLDL 486 (842)
Q Consensus 472 LasGs~DgtIrlWD~ 486 (842)
|++|+.|++|||||.
T Consensus 341 LaSGS~D~TIklWd~ 355 (356)
T 2w18_A 341 LLAGQKDGNIFVYHY 355 (356)
T ss_dssp EEEECTTSCEEEEEE
T ss_pred EEEEECCCcEEEecC
Confidence 999999999999995
|
| >4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.89 E-value=1.7e-21 Score=218.43 Aligned_cols=226 Identities=16% Similarity=0.150 Sum_probs=172.0
Q ss_pred CeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEecc-cCCcEEEEEEecCCC-EEEeeCCCcEEEEeCC
Q 003171 193 SVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQA-HRGPVLSLCISSYGD-LWSGSEGGGIKIWPWE 270 (842)
Q Consensus 193 ~V~~la~dpdg~~LaSGs~DGtIrlWdl~~g~~~~~~~~~~~~~l~g-H~~~V~slafs~dG~-L~SgS~DgtIrvWd~~ 270 (842)
.+.++.+++ +.+++++.||+|++|++.++ +....+.. |.+.|++|+|+|+|+ |++|+.||+|++||+.
T Consensus 95 ~~~~~~~s~--~~l~~~~~d~~v~lw~~~~~--------~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~ 164 (401)
T 4aez_A 95 YLNLLDWSN--LNVVAVALERNVYVWNADSG--------SVSALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVE 164 (401)
T ss_dssp TCBCEEECT--TSEEEEEETTEEEEEETTTC--------CEEEEEECCTTCCEEEEEECTTSSEEEEEETTSCEEEEETT
T ss_pred eEEEEeecC--CCEEEEECCCeEEEeeCCCC--------cEeEeeecCCCCCEEEEEECCCCCEEEEECCCCeEEEEECc
Confidence 355566664 56888999999999999987 44445544 899999999999998 7899999999999997
Q ss_pred CccceeecCCCceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcCCCCEEEEeC-CCcEEEEEccC-CcEEEEe
Q 003171 271 AIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDART-RELLKVF 348 (842)
Q Consensus 271 t~~~~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s-~~tI~lWD~~t-g~~l~~l 348 (842)
+++....+.. | ...+.++..+ +..+++++ +++|++||+++ +..+..+
T Consensus 165 ~~~~~~~~~~-------------------~----------~~~v~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~ 213 (401)
T 4aez_A 165 SQTKLRTMAG-------------------H----------QARVGCLSWN--RHVLSSGSRSGAIHHHDVRIANHQIGTL 213 (401)
T ss_dssp TCCEEEEECC-------------------C----------SSCEEEEEEE--TTEEEEEETTSEEEEEETTSSSCEEEEE
T ss_pred CCeEEEEecC-------------------C----------CCceEEEEEC--CCEEEEEcCCCCEEEEecccCcceeeEE
Confidence 6543222211 1 3345666663 45666665 67999999974 3322222
Q ss_pred ecCCceEeeeecccCCCcccccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEeecCccccCCCceEEEEEC
Q 003171 349 NIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTS 428 (842)
Q Consensus 349 ~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~al~~s 428 (842)
..|...|.+++++
T Consensus 214 -------------------------------------------------------------------~~~~~~v~~~~~~ 226 (401)
T 4aez_A 214 -------------------------------------------------------------------QGHSSEVCGLAWR 226 (401)
T ss_dssp -------------------------------------------------------------------ECCSSCEEEEEEC
T ss_pred -------------------------------------------------------------------cCCCCCeeEEEEc
Confidence 1234456778899
Q ss_pred CCCc-EEEEeCCCeEEEEcC-CCCeeeeeecCCccEEEEEe--cCC-EEEEEe--cCcEEEEEeCC-CcccccccccccC
Q 003171 429 IDGM-IWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQCLCT--FGS-QIWVGY--MNGIVQVLDLE-GNLLGGWVAHSSP 500 (842)
Q Consensus 429 ~dg~-l~Sgs~DgtIrlWD~-~g~~l~~l~~H~~~V~sls~--dG~-~LasGs--~DgtIrlWD~~-g~~i~~l~gH~~~ 500 (842)
|++. +++|+.|++|++||+ +++++.++.+|...|.++++ ++. .+++|+ .|++|++||+. ++++..+. |...
T Consensus 227 ~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~~-~~~~ 305 (401)
T 4aez_A 227 SDGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVD-AGSQ 305 (401)
T ss_dssp TTSSEEEEEETTSCEEEEETTCSSEEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEEEEE-CSSC
T ss_pred CCCCEEEEEeCCCeEEEccCCCCCccEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEEEEe-CCCc
Confidence 9887 899999999999999 68899999999999999876 454 677765 79999999987 67777774 6678
Q ss_pred EEEEEe--CCCEEEE--EcCCCCeeeccccC
Q 003171 501 VIKMAV--GAGYIFT--LANHGGIRGWNVTS 527 (842)
Q Consensus 501 V~sla~--dg~~l~S--~S~DgtIrvWd~~~ 527 (842)
|.++++ +++.+++ |+.|+.|++|++.+
T Consensus 306 v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~ 336 (401)
T 4aez_A 306 VTSLIWSPHSKEIMSTHGFPDNNLSIWSYSS 336 (401)
T ss_dssp EEEEEECSSSSEEEEEECTTTCEEEEEEEET
T ss_pred EEEEEECCCCCeEEEEeecCCCcEEEEecCC
Confidence 999885 7888888 45899999999765
|
| >3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A | Back alignment and structure |
|---|
Probab=99.87 E-value=1.6e-20 Score=207.72 Aligned_cols=229 Identities=11% Similarity=0.099 Sum_probs=146.1
Q ss_pred ceeEEecccCCcEEEEEEecCCC-EEEeeCCCcEEEEeCCCccceeecCCCceeeeEEEEeeceeecccceeccceeeee
Q 003171 232 GEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSIL 310 (842)
Q Consensus 232 ~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~~t~~~~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~ 310 (842)
..+.++.+|.++|++|+|+|||+ |++|+.| .++||++++.+......
T Consensus 10 ~~~~~~~~h~~~V~~v~fs~dg~~la~g~~~-~~~iw~~~~~~~~~~~~------------------------------- 57 (355)
T 3vu4_A 10 NPIVPENHVSNPVTDYEFNQDQSCLILSTLK-SFEIYNVHPVAHIMSQE------------------------------- 57 (355)
T ss_dssp ---------CCCCCEEEECTTSSEEEEECSS-EEEEEEETTEEEEEEEE-------------------------------
T ss_pred CCccccccCCCceEEEEECCCCCEEEEEcCC-EEEEEecCCcceeeeee-------------------------------
Confidence 45556789999999999999999 5666655 68999986543221110
Q ss_pred cCCEEEEEEcCCCCEE-EEe-CCCcEEEEEccCCcEEEEeecCCceEeeeecccCCCcccccceEEEEEecCCCCcccee
Q 003171 311 TSDIKNLLSDHSRAKV-WSA-GFLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSS 388 (842)
Q Consensus 311 s~~v~~las~~~~~~v-~s~-s~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s 388 (842)
...+..+.....+..+ .++ ++++|+|||+.+++++..+..+..+ ..+.++...
T Consensus 58 ~~~~~~~~~~~~~~~~~~~~~~d~~v~iWd~~~~~~~~~~~~~~~v-~~v~~~~~~------------------------ 112 (355)
T 3vu4_A 58 MRHLSKVRMLHRTNYVAFVTGVKEVVHIWDDVKKQDVSRIKVDAPV-KDLFLSREF------------------------ 112 (355)
T ss_dssp CSCCCEEEECTTSSEEEEECSSTTEEEEEETTTTEEEEEEECSSCE-EEEEECSSE------------------------
T ss_pred cCCeEEEEEcCCCCEEEEEECCccEEEEEECCCCcEEEEEECCCce-EEEEEcCCE------------------------
Confidence 0012223333344443 333 3569999999999998887644332 222222110
Q ss_pred eeEeecCcceEEecCCcEEEEee--cC-ccccCC-CceEEEEECCCCcEEE--EeCCCeEEEEcC-CCC-----------
Q 003171 389 FGFFQRSRNAIMGAADAVRRVAA--KG-GFGDDN-RRTEALTTSIDGMIWT--GGANGLLLQWDP-NGN----------- 450 (842)
Q Consensus 389 ~~~~~~~~~~~~g~~~~v~~v~~--~g-~~~~~~-~~v~al~~s~dg~l~S--gs~DgtIrlWD~-~g~----------- 450 (842)
.++...+. .+++. .+ ...... .....+++++ ..++. |+.||+|++||+ +++
T Consensus 113 ---------~~~~~~~~-i~i~d~~~~~~~~~~~~~~~~~~~~s~-~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~ 181 (355)
T 3vu4_A 113 ---------IVVSYGDV-ISVFKFGNPWKRITDDIRFGGVCEFSN-GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQ 181 (355)
T ss_dssp ---------EEEEETTE-EEEEESSTTCCBSSCCEEEEEEEEEET-TEEEEEESSCTTCEEEEECCC-------------
T ss_pred ---------EEEEEcCE-EEEEECCCCceeeEEeccCCceEEEEc-cEEEEeCCCcCcEEEEEECCCCCccccccccccc
Confidence 01111111 12221 11 010000 0222345666 55554 578999999999 444
Q ss_pred -----eeeeeecCCccEEEEEe--cCCEEEEEecCcE-EEEEeCC-Cccccccc-c-cccCEEEEEe--CCCEEEEEcCC
Q 003171 451 -----RLQDFQYLPFAVQCLCT--FGSQIWVGYMNGI-VQVLDLE-GNLLGGWV-A-HSSPVIKMAV--GAGYIFTLANH 517 (842)
Q Consensus 451 -----~l~~l~~H~~~V~sls~--dG~~LasGs~Dgt-IrlWD~~-g~~i~~l~-g-H~~~V~sla~--dg~~l~S~S~D 517 (842)
+++++.+|...|+++++ +|++|++|+.|++ |+|||++ ++++.++. + |.+.|+++++ +++++++++.|
T Consensus 182 ~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~~~~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d 261 (355)
T 3vu4_A 182 KAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDGVLVREFRRGLDRADVVDMKWSTDGSKLAVVSDK 261 (355)
T ss_dssp -----CCEEECCCSSCEEEEEECTTSSEEEEEETTCSEEEEEETTTCCEEEEEECTTCCSCEEEEEECTTSCEEEEEETT
T ss_pred cccCcccEEEEccCCceEEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCCCCCcEEEEEECCCCCEEEEEECC
Confidence 37889999999999865 7899999999998 9999997 78899998 6 9999999985 78899999999
Q ss_pred CCeeeccccCC
Q 003171 518 GGIRGWNVTSP 528 (842)
Q Consensus 518 gtIrvWd~~~~ 528 (842)
++|++||+...
T Consensus 262 ~~v~iw~~~~~ 272 (355)
T 3vu4_A 262 WTLHVFEIFND 272 (355)
T ss_dssp CEEEEEESSCC
T ss_pred CEEEEEEccCC
Confidence 99999998764
|
| >2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B | Back alignment and structure |
|---|
Probab=99.86 E-value=5.9e-20 Score=208.29 Aligned_cols=238 Identities=15% Similarity=0.137 Sum_probs=166.5
Q ss_pred ecCCCEEEEeCCCCccccccccccccCCCCCCCCCCeeeeeecCCCeEEEEEcCCCC-EEEEEeCCCcEEEEECCCCccC
Q 003171 148 GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASG-VVWSGHRDGRIMCWKMNARLLD 226 (842)
Q Consensus 148 ~~D~~vrvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~V~~la~dpdg~-~LaSGs~DGtIrlWdl~~g~~~ 226 (842)
+.|+.|++||+.+...... ..+ ..........| ..+|.+++++|++. +|++|+.||+|++|++..+..
T Consensus 148 ~~dg~V~vwd~~~~~~~~~--------~~~-~~~~~~~~~~h-~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~- 216 (430)
T 2xyi_A 148 TPSSDVLVFDYTKHPSKPE--------PSG-ECQPDLRLRGH-QKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPK- 216 (430)
T ss_dssp CSSSCEEEEEGGGSCSSCC--------TTC-CCCCSEEEECC-SSCCCCEEECTTSTTEEEEECTTSCEEEEETTSCCB-
T ss_pred CCCCcEEEEECCCcccccC--------ccc-cCCCcEEecCC-CCCeEEEEeCCCCCCeEEEEeCCCeEEEEeCCCCCC-
Confidence 4588999999965211100 000 00111222234 77899999999988 999999999999999987410
Q ss_pred CCCCcceeEEecccCCcEEEEEEecC-CC-EEEeeCCCcEEEEeCCCccceeecCCCceeeeEEEEeeceeecccceecc
Q 003171 227 SDDGFGEVLSWQAHRGPVLSLCISSY-GD-LWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVN 304 (842)
Q Consensus 227 ~~~~~~~~~~l~gH~~~V~slafs~d-G~-L~SgS~DgtIrvWd~~t~~~~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~ 304 (842)
..........+.+|.+.|.+++|+|+ +. |++|+.|++|++||+.+..... ... .+++|
T Consensus 217 ~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~-------~~~---------~~~~~---- 276 (430)
T 2xyi_A 217 EHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSK-------PSH---------TVDAH---- 276 (430)
T ss_dssp GGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSS-------CSE---------EEECC----
T ss_pred CCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCc-------cee---------EeecC----
Confidence 00001124567899999999999994 45 6799999999999997642100 000 00111
Q ss_pred ceeeeecCCEEEEEEcCCCC-EEEEeC-CCcEEEEEccCC-cEEEEeecCCceEeeeecccCCCcccccceEEEEEecCC
Q 003171 305 GFSSILTSDIKNLLSDHSRA-KVWSAG-FLSFALWDARTR-ELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSK 381 (842)
Q Consensus 305 ~~~~~~s~~v~~las~~~~~-~v~s~s-~~tI~lWD~~tg-~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~ 381 (842)
...+.++++++.+. .+++++ +++|++||+++. .++.++
T Consensus 277 ------~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~--------------------------------- 317 (430)
T 2xyi_A 277 ------TAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSF--------------------------------- 317 (430)
T ss_dssp ------SSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEE---------------------------------
T ss_pred ------CCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEe---------------------------------
Confidence 45688888888776 566665 689999999763 222221
Q ss_pred CCccceeeeEeecCcceEEecCCcEEEEeecCccccCCCceEEEEECCCCc--EEEEeCCCeEEEEcCCC----------
Q 003171 382 KDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGM--IWTGGANGLLLQWDPNG---------- 449 (842)
Q Consensus 382 ~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~al~~s~dg~--l~Sgs~DgtIrlWD~~g---------- 449 (842)
..|...|.++.++|++. +++++.|++|++||+..
T Consensus 318 ----------------------------------~~h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~ 363 (430)
T 2xyi_A 318 ----------------------------------ESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDA 363 (430)
T ss_dssp ----------------------------------ECCSSCEEEEEECSSCTTEEEEEETTSCCEEEEGGGTTCCCCHHHH
T ss_pred ----------------------------------ecCCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCccccCcccc
Confidence 12344567788999884 78999999999999942
Q ss_pred -----CeeeeeecCCccEEEEEe--cCC-EEEEEecCcEEEEEeCCCc
Q 003171 450 -----NRLQDFQYLPFAVQCLCT--FGS-QIWVGYMNGIVQVLDLEGN 489 (842)
Q Consensus 450 -----~~l~~l~~H~~~V~sls~--dG~-~LasGs~DgtIrlWD~~g~ 489 (842)
+++..+.+|...|++++. +++ +|++++.||.|+||++...
T Consensus 364 ~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~~~ 411 (430)
T 2xyi_A 364 EDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMAEN 411 (430)
T ss_dssp HHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECHH
T ss_pred ccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEECCCCEEEeEcccc
Confidence 667788899999999875 677 9999999999999998643
|
| >3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.85 E-value=2e-20 Score=227.85 Aligned_cols=240 Identities=11% Similarity=0.141 Sum_probs=170.8
Q ss_pred eeEEEEec--CCEEEE-ecCCCEEEEeCCCCccccccccccccCCCCCCCCCCeeeeeecCCCeEEEEEcCC--CCEEEE
Q 003171 134 FLRTIVCT--EEQLWA-GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEA--SGVVWS 208 (842)
Q Consensus 134 ~~~~l~~~--~~~l~~-~~D~~vrvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~V~~la~dpd--g~~LaS 208 (842)
.+++++.+ ++.|.+ +.|++|+|||+.+.... + ......| .++|.|++|+|+ +++|+|
T Consensus 11 ~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~-~----------------~~~l~~h-~~~V~~l~~s~~~~~~~l~s 72 (753)
T 3jro_A 11 LIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHK-L----------------IDTLTGH-EGPVWRVDWAHPKFGTILAS 72 (753)
T ss_dssp CEEEECCCSSSCCEEEEETTTEEEEEEEETTEEE-E----------------EEEECCC-SSCEEEEEECCTTSCSEEEE
T ss_pred eeEEEEECCCCCeEEEEECCCcEEEEecCCCCCc-c----------------ceeccCC-cCceEEEEecCCCCCCEEEE
Confidence 45566654 445555 46999999998632110 0 0011123 789999999988 999999
Q ss_pred EeCCCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecC--CC-EEEeeCCCcEEEEeCCCccceeecCCCceee
Q 003171 209 GHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSY--GD-LWSGSEGGGIKIWPWEAIEKALSLKPEERHT 285 (842)
Q Consensus 209 Gs~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~d--G~-L~SgS~DgtIrvWd~~t~~~~l~~~~~~~~~ 285 (842)
|+.||+|++||+.++. ......+.+|..+|++++|+|+ |. |++|+.||+|++||+.+........
T Consensus 73 ~s~Dg~I~vwd~~~~~------~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~------ 140 (753)
T 3jro_A 73 CSYDGKVLIWKEENGR------WSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPII------ 140 (753)
T ss_dssp EETTSCEEEEEEETTE------EEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEE------
T ss_pred EeCCCeEEEEECCCCc------ccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeE------
Confidence 9999999999998861 1256778899999999999999 77 7899999999999997642211000
Q ss_pred eEEEEeeceeecccceeccceeeeecCCEEEEEEcC-------------CCCEEEEeC-CCcEEEEEccCCcEEEEeecC
Q 003171 286 AALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDH-------------SRAKVWSAG-FLSFALWDARTRELLKVFNID 351 (842)
Q Consensus 286 ~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~-------------~~~~v~s~s-~~tI~lWD~~tg~~l~~l~~~ 351 (842)
+.+| ...+.++...+ ++..+++++ +++|++||++++.....+.
T Consensus 141 -----------~~~~----------~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~-- 197 (753)
T 3jro_A 141 -----------IDAH----------AIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLE-- 197 (753)
T ss_dssp -----------EECC----------SSCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEE--
T ss_pred -----------eecC----------CCceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceee--
Confidence 0011 33456666665 355666665 6899999997753211000
Q ss_pred CceEeeeecccCCCcccccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEeecCccccCCCceEEEEECCC-
Q 003171 352 GQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSID- 430 (842)
Q Consensus 352 ~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~al~~s~d- 430 (842)
..+..|...|.+++++|+
T Consensus 198 -------------------------------------------------------------~~~~~h~~~V~~l~~sp~~ 216 (753)
T 3jro_A 198 -------------------------------------------------------------STLEGHSDWVRDVAWSPTV 216 (753)
T ss_dssp -------------------------------------------------------------EEECCCSSCEEEEEECCCC
T ss_pred -------------------------------------------------------------eeecCCCCcEEEEEeccCC
Confidence 012345566788999999
Q ss_pred --Cc-EEEEeCCCeEEEEcC-CCC-----eeeeeecCCccEEEEE--ecCCEEEEEecCcEEEEEeCC
Q 003171 431 --GM-IWTGGANGLLLQWDP-NGN-----RLQDFQYLPFAVQCLC--TFGSQIWVGYMNGIVQVLDLE 487 (842)
Q Consensus 431 --g~-l~Sgs~DgtIrlWD~-~g~-----~l~~l~~H~~~V~sls--~dG~~LasGs~DgtIrlWD~~ 487 (842)
+. +++|+.||+|++||+ +++ .+.....|...|++++ ++|++|++|+.||.|++||++
T Consensus 217 ~~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~~ 284 (753)
T 3jro_A 217 LLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKEN 284 (753)
T ss_dssp SSSEEEEEEESSSCEEEEEESSSSSCCBCCBSSSSCCSSCCCCEEECTTTCCEEEECSSSCEECCBCC
T ss_pred CCCCEEEEEecCCEEEEecCCCCCCcceeEEeccCCCCCceEEEEEcCCCCEEEEEcCCCEEEEEecC
Confidence 66 899999999999999 443 3344456888998876 478999999999999999986
|
| >1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3 | Back alignment and structure |
|---|
Probab=99.85 E-value=1.2e-18 Score=193.24 Aligned_cols=264 Identities=10% Similarity=0.093 Sum_probs=183.2
Q ss_pred eEEEEec--CCEEEE-e-cCCCEEEEeCCCCccccccccccccCCCCCCCCCCeeeeeecCCCeEEEEEcCCCCEEE-EE
Q 003171 135 LRTIVCT--EEQLWA-G-GENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVW-SG 209 (842)
Q Consensus 135 ~~~l~~~--~~~l~~-~-~D~~vrvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~V~~la~dpdg~~La-SG 209 (842)
+..++.+ ++.+++ + .|+.|++||+.+..... .+.+...|.+++++|+++.|+ ++
T Consensus 34 ~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~---------------------~~~~~~~v~~~~~spdg~~l~~~~ 92 (391)
T 1l0q_A 34 PMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIA---------------------TVPAGSSPQGVAVSPDGKQVYVTN 92 (391)
T ss_dssp EEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEE---------------------EEECSSSEEEEEECTTSSEEEEEE
T ss_pred cceEEECCCCCEEEEECCCCCeEEEEECCCCeEEE---------------------EEECCCCccceEECCCCCEEEEEE
Confidence 4455554 446655 3 68999999997643321 111144899999999999775 55
Q ss_pred eCCCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCCC-E-EEeeCCCcEEEEeCCCccceeecCCCceeeeE
Q 003171 210 HRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-L-WSGSEGGGIKIWPWEAIEKALSLKPEERHTAA 287 (842)
Q Consensus 210 s~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L-~SgS~DgtIrvWd~~t~~~~l~~~~~~~~~~~ 287 (842)
+.|++|++||+.++ +....+..| ..+.+++|+|+|+ | ++++.|++|++||+.+++....+..
T Consensus 93 ~~~~~v~v~d~~~~--------~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~------- 156 (391)
T 1l0q_A 93 MASSTLSVIDTTSN--------TVAGTVKTG-KSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSV------- 156 (391)
T ss_dssp TTTTEEEEEETTTT--------EEEEEEECS-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEEC-------
T ss_pred CCCCEEEEEECCCC--------eEEEEEeCC-CCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEec-------
Confidence 67799999999986 455555554 4789999999998 6 6899999999999976432211110
Q ss_pred EEEeeceeecccceeccceeeeecCCEEEEEEcCCCCEEE-EeC-CCcEEEEEccCCcEEEEeecCCceEeeeecccCCC
Q 003171 288 LIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVW-SAG-FLSFALWDARTRELLKVFNIDGQIENRVDMSLLPD 365 (842)
Q Consensus 288 l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~-s~s-~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~ 365 (842)
...+..+++++++..++ ++. +++|++||+.+++++..+..+
T Consensus 157 -----------------------~~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~-------------- 199 (391)
T 1l0q_A 157 -----------------------GRSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVKVE-------------- 199 (391)
T ss_dssp -----------------------CSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECS--------------
T ss_pred -----------------------CCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCeEEEEEecC--------------
Confidence 12345677788887774 444 468999999988765443211
Q ss_pred cccccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEeecCccccCCCceEEEEECCCCc-EEEEe---CCCe
Q 003171 366 FAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGM-IWTGG---ANGL 441 (842)
Q Consensus 366 ~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~al~~s~dg~-l~Sgs---~Dgt 441 (842)
..+..++++|+|. +++++ .++.
T Consensus 200 ------------------------------------------------------~~~~~~~~~~~g~~l~~~~~~~~~~~ 225 (391)
T 1l0q_A 200 ------------------------------------------------------AAPSGIAVNPEGTKAYVTNVDKYFNT 225 (391)
T ss_dssp ------------------------------------------------------SEEEEEEECTTSSEEEEEEECSSCCE
T ss_pred ------------------------------------------------------CCccceEECCCCCEEEEEecCcCCCc
Confidence 1234567888886 67776 6899
Q ss_pred EEEEcC-CCCeeeeeecCCccEEEEE--ecCCEE-EEEecCcEEEEEeCC-CcccccccccccCEE------E-------
Q 003171 442 LLQWDP-NGNRLQDFQYLPFAVQCLC--TFGSQI-WVGYMNGIVQVLDLE-GNLLGGWVAHSSPVI------K------- 503 (842)
Q Consensus 442 IrlWD~-~g~~l~~l~~H~~~V~sls--~dG~~L-asGs~DgtIrlWD~~-g~~i~~l~gH~~~V~------s------- 503 (842)
|++||+ +++++..+..|.. +.+++ ++|++| ++++.|++|++||++ ++++..+..|..+.. .
T Consensus 226 v~~~d~~~~~~~~~~~~~~~-~~~~~~s~dg~~l~~s~~~d~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (391)
T 1l0q_A 226 VSMIDTGTNKITARIPVGPD-PAGIAVTPDGKKVYVALSFXNTVSVIDTATNTITATMAVGKNPYASGQFIGSIPVQPVY 304 (391)
T ss_dssp EEEEETTTTEEEEEEECCSS-EEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSSEECCSSCEEECSSCCCC
T ss_pred EEEEECCCCeEEEEEecCCC-ccEEEEccCCCEEEEEcCCCCEEEEEECCCCcEEEEEECCcCCCccceeeecccccccc
Confidence 999999 6888888887664 56654 578887 566789999999987 777777777655431 1
Q ss_pred ----EEeCC----------CEEEEEcCCCCeeeccccC
Q 003171 504 ----MAVGA----------GYIFTLANHGGIRGWNVTS 527 (842)
Q Consensus 504 ----la~dg----------~~l~S~S~DgtIrvWd~~~ 527 (842)
...+. -.+.+.+.|.++++|++..
T Consensus 305 ~~a~fs~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~ 342 (391)
T 1l0q_A 305 PSADFKSNITSGYIFLSEPVQFTDLSKDATEWKWDFGD 342 (391)
T ss_dssp CBCCEEESCCSSEEETTCCEEEEECCBSCSEEEEECSS
T ss_pred cccccccccccccccccceEEEEeCCCCceEEEEECCC
Confidence 11111 2355677788888888754
|
| >3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=99.83 E-value=4.4e-19 Score=199.45 Aligned_cols=231 Identities=13% Similarity=0.105 Sum_probs=170.7
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeE-----EecccCCcEEEEEEecCCC-EEEeeCCCcE
Q 003171 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVL-----SWQAHRGPVLSLCISSYGD-LWSGSEGGGI 264 (842)
Q Consensus 191 ~~~V~~la~dpdg~~LaSGs~DGtIrlWdl~~g~~~~~~~~~~~~-----~l~gH~~~V~slafs~dG~-L~SgS~DgtI 264 (842)
...+.+++++|++.++++++.|++|++||+.++ +... .+.+|.+.|++++|+++|+ +++++.|++|
T Consensus 122 ~~~~~~~~~s~~~~~~~~~~~~~~i~~~d~~~g--------~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~v 193 (433)
T 3bws_A 122 GFQPKSVRFIDNTRLAIPLLEDEGMDVLDINSG--------QTVRLSPPEKYKKKLGFVETISIPEHNELWVSQMQANAV 193 (433)
T ss_dssp SSCBCCCEESSSSEEEEEBTTSSSEEEEETTTC--------CEEEECCCHHHHTTCCEEEEEEEGGGTEEEEEEGGGTEE
T ss_pred CCCceEEEEeCCCeEEEEeCCCCeEEEEECCCC--------eEeeecCcccccccCCceeEEEEcCCCEEEEEECCCCEE
Confidence 345669999998888889999999999999987 3444 4568999999999999998 5799999999
Q ss_pred EEEeCCCccceeecCCCceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcCCCCEEE-EeC-CCcEEEEEccCC
Q 003171 265 KIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVW-SAG-FLSFALWDARTR 342 (842)
Q Consensus 265 rvWd~~t~~~~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~-s~s-~~tI~lWD~~tg 342 (842)
++||+.+++....+.. + ...+.++++++++..++ ++. +++|++||+.++
T Consensus 194 ~~~d~~~~~~~~~~~~-------------------~----------~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~ 244 (433)
T 3bws_A 194 HVFDLKTLAYKATVDL-------------------T----------GKWSKILLYDPIRDLVYCSNWISEDISVIDRKTK 244 (433)
T ss_dssp EEEETTTCCEEEEEEC-------------------S----------SSSEEEEEEETTTTEEEEEETTTTEEEEEETTTT
T ss_pred EEEECCCceEEEEEcC-------------------C----------CCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCC
Confidence 9999976443221110 1 23466788888887775 443 578999999988
Q ss_pred cEEEEeecCCceEeeeecccCCCcccccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEeecCccccCCCce
Q 003171 343 ELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRT 422 (842)
Q Consensus 343 ~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v 422 (842)
+++..+..+ ..+
T Consensus 245 ~~~~~~~~~--------------------------------------------------------------------~~~ 256 (433)
T 3bws_A 245 LEIRKTDKI--------------------------------------------------------------------GLP 256 (433)
T ss_dssp EEEEECCCC--------------------------------------------------------------------SEE
T ss_pred cEEEEecCC--------------------------------------------------------------------CCc
Confidence 765443211 113
Q ss_pred EEEEECCCCc-EEEEe--------CCCeEEEEcC-CCCeeeeeecCCccEEEEE--ecCCEE-EEEecCcEEEEEeCC-C
Q 003171 423 EALTTSIDGM-IWTGG--------ANGLLLQWDP-NGNRLQDFQYLPFAVQCLC--TFGSQI-WVGYMNGIVQVLDLE-G 488 (842)
Q Consensus 423 ~al~~s~dg~-l~Sgs--------~DgtIrlWD~-~g~~l~~l~~H~~~V~sls--~dG~~L-asGs~DgtIrlWD~~-g 488 (842)
.+++++|+|. +++++ .|+.|++||+ +++.+..+ .|...+.+++ ++|+++ ++++.|++|++||++ +
T Consensus 257 ~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~-~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~ 335 (433)
T 3bws_A 257 RGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTI-GPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEK 335 (433)
T ss_dssp EEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEE-EEEECEEEEEECSSTTEEEEEETTTTEEEEEETTTT
T ss_pred eEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCcEEeec-cCCCCcceEEECCCCCEEEEEecCCCEEEEEECCCC
Confidence 4567888885 67776 5889999999 57666655 4556777775 468755 556789999999997 5
Q ss_pred cccccccccccCEEEEEe--CCCEEEEEcC---------------CCCeeeccccCC
Q 003171 489 NLLGGWVAHSSPVIKMAV--GAGYIFTLAN---------------HGGIRGWNVTSP 528 (842)
Q Consensus 489 ~~i~~l~gH~~~V~sla~--dg~~l~S~S~---------------DgtIrvWd~~~~ 528 (842)
+++..+. |...+.++++ ++++++.++. ||.|++||+.+.
T Consensus 336 ~~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~ 391 (433)
T 3bws_A 336 KVQKSIP-VFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTD 391 (433)
T ss_dssp EEEEEEE-CSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTT
T ss_pred cEEEEec-CCCCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCC
Confidence 6666664 7778888874 6788887766 579999997653
|
| >1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=3.4e-18 Score=200.54 Aligned_cols=274 Identities=9% Similarity=-0.028 Sum_probs=182.7
Q ss_pred EEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEec-ccCCcEEEEEEecCCC-EEEeeCCCcEEEEeC--CCcc
Q 003171 198 VGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQ-AHRGPVLSLCISSYGD-LWSGSEGGGIKIWPW--EAIE 273 (842)
Q Consensus 198 a~dpdg~~LaSGs~DGtIrlWdl~~g~~~~~~~~~~~~~l~-gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~--~t~~ 273 (842)
+++|++.++++++.|++|++||..++ +.+.++. ||. +.+++|+|||+ |++++.|++|++||+ .+++
T Consensus 144 ~~~p~~~~~vs~~~d~~V~v~D~~t~--------~~~~~i~~g~~--~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~ 213 (543)
T 1nir_A 144 DLDLPNLFSVTLRDAGQIALVDGDSK--------KIVKVIDTGYA--VHISRMSASGRYLLVIGRDARIDMIDLWAKEPT 213 (543)
T ss_dssp CCCGGGEEEEEEGGGTEEEEEETTTC--------CEEEEEECSTT--EEEEEECTTSCEEEEEETTSEEEEEETTSSSCE
T ss_pred ccCCCCEEEEEEcCCCeEEEEECCCc--------eEEEEEecCcc--cceEEECCCCCEEEEECCCCeEEEEECcCCCCc
Confidence 47889999999999999999999987 6677777 454 89999999998 789999999999999 5432
Q ss_pred ceeecCCCceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcC----CCCEEEEeC--CCcEEEEEccCCcEEEE
Q 003171 274 KALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDH----SRAKVWSAG--FLSFALWDARTRELLKV 347 (842)
Q Consensus 274 ~~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~----~~~~v~s~s--~~tI~lWD~~tg~~l~~ 347 (842)
...++. .......+++++ ++..+++++ +.+|.+||..|++++++
T Consensus 214 ~~~~i~------------------------------~g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~ 263 (543)
T 1nir_A 214 KVAEIK------------------------------IGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQI 263 (543)
T ss_dssp EEEEEE------------------------------CCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEE
T ss_pred EEEEEe------------------------------cCCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEecccccccee
Confidence 111110 012356788888 888888887 47999999999999988
Q ss_pred eecCCceEeeeecccCCCcccccceEEEEEecCCCCccceeeeEeecCcce-EEecCCcEEE-Eeec-Cc-----cccCC
Q 003171 348 FNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNA-IMGAADAVRR-VAAK-GG-----FGDDN 419 (842)
Q Consensus 348 l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~-~~g~~~~v~~-v~~~-g~-----~~~~~ 419 (842)
+...+.......+.+. .....+.+.+.+... .....++... +... +. ...+.
T Consensus 264 i~~~g~~~~~~~~~~~--------------------~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i~~~ 323 (543)
T 1nir_A 264 VSTRGMTVDTQTYHPE--------------------PRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAA 323 (543)
T ss_dssp EECCEECSSSCCEESC--------------------CCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCEEEEEECC
T ss_pred ecccCcccCccccccC--------------------CceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcceeEEeccC
Confidence 7643210000000000 000011111111111 1111122111 1110 00 11223
Q ss_pred CceEEEEECCCCc-EEEE-eCCCeEEEEcC-CCCeeeeeec----CCccEEEE-Eec-CCEEEEEe-cCcEEEEEeCC--
Q 003171 420 RRTEALTTSIDGM-IWTG-GANGLLLQWDP-NGNRLQDFQY----LPFAVQCL-CTF-GSQIWVGY-MNGIVQVLDLE-- 487 (842)
Q Consensus 420 ~~v~al~~s~dg~-l~Sg-s~DgtIrlWD~-~g~~l~~l~~----H~~~V~sl-s~d-G~~LasGs-~DgtIrlWD~~-- 487 (842)
..+..++|+|||+ ++++ ..+++|++||+ +|+++.++.. |......+ .++ |..++++. .|++|.|||+.
T Consensus 324 ~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~~ph~g~g~~~~~p~~g~~~~s~~~~d~~V~v~d~~~~ 403 (543)
T 1nir_A 324 PFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKYGPVWSTSHLGDGSISLIGTDPK 403 (543)
T ss_dssp SSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSBCCTTCEEEEETTTEEEEEEEBSSSSEEEEEECCTT
T ss_pred cCccCceECCCCCEEEEEecCCCeEEEEECCCCeEEEeeccCCCCCCCCCcccCCCCCccEEEeccCCCceEEEEEeCCC
Confidence 4455789999998 5544 46889999999 7899888874 76554444 456 44555554 58999999974
Q ss_pred ------CcccccccccccCEEEEE--eCCCEEEEEc-------CCCCeeeccccCCCCC
Q 003171 488 ------GNLLGGWVAHSSPVIKMA--VGAGYIFTLA-------NHGGIRGWNVTSPGPL 531 (842)
Q Consensus 488 ------g~~i~~l~gH~~~V~sla--~dg~~l~S~S-------~DgtIrvWd~~~~~~~ 531 (842)
+++++++.+|.+.+..|+ +++++|++++ .+++|++||+.+....
T Consensus 404 ~~~~~~~~~v~~l~~~g~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~ 462 (543)
T 1nir_A 404 NHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAK 462 (543)
T ss_dssp TCTTTBTSEEEEEECSCSCCCCEECCTTCCEEEECCTTCSSHHHHTCEEEEETTCTTSC
T ss_pred CCchhcCeEEEEEEcCCCCceEEEcCCCCCcEEEecCCCCCcccCceEEEEECCCCCCC
Confidence 468899999998888777 5888999887 3789999999886654
|
| >1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A* | Back alignment and structure |
|---|
Probab=99.79 E-value=6e-17 Score=189.87 Aligned_cols=307 Identities=11% Similarity=0.037 Sum_probs=192.0
Q ss_pred EEEE--ecCCCEEEEeCCCCccccccccccccCCCCCCCCCCeeeeeecCCCeEEEEEcCCCCEEEEEeCCCcEEEEEC-
Q 003171 144 QLWA--GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGHRDGRIMCWKM- 220 (842)
Q Consensus 144 ~l~~--~~D~~vrvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~V~~la~dpdg~~LaSGs~DGtIrlWdl- 220 (842)
.+++ +.|++|++||..+...... +.....+.+++++|||++|++++.|++|++||+
T Consensus 150 ~~~vs~~~d~~V~v~D~~t~~~~~~---------------------i~~g~~~~~v~~spdg~~l~v~~~d~~V~v~D~~ 208 (543)
T 1nir_A 150 LFSVTLRDAGQIALVDGDSKKIVKV---------------------IDTGYAVHISRMSASGRYLLVIGRDARIDMIDLW 208 (543)
T ss_dssp EEEEEEGGGTEEEEEETTTCCEEEE---------------------EECSTTEEEEEECTTSCEEEEEETTSEEEEEETT
T ss_pred EEEEEEcCCCeEEEEECCCceEEEE---------------------EecCcccceEEECCCCCEEEEECCCCeEEEEECc
Confidence 5555 3588999999876543221 110223889999999999999999999999999
Q ss_pred -CCCccCCCCCcceeEEecccCCcEEEEEEec----CCC-EEEee-CCCcEEEEeCCCccceeecCCCceeeeEEEEeec
Q 003171 221 -NARLLDSDDGFGEVLSWQAHRGPVLSLCISS----YGD-LWSGS-EGGGIKIWPWEAIEKALSLKPEERHTAALIVERS 293 (842)
Q Consensus 221 -~~g~~~~~~~~~~~~~l~gH~~~V~slafs~----dG~-L~SgS-~DgtIrvWd~~t~~~~l~~~~~~~~~~~l~~~~s 293 (842)
.++ +.+.++.. ...+.+|+||| ||+ |++++ .+++|+|||..+++....+...
T Consensus 209 ~~t~--------~~~~~i~~-g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~------------ 267 (543)
T 1nir_A 209 AKEP--------TKVAEIKI-GIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTR------------ 267 (543)
T ss_dssp SSSC--------EEEEEEEC-CSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECC------------
T ss_pred CCCC--------cEEEEEec-CCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeeccc------------
Confidence 665 55666664 45679999999 998 67776 5899999999775432222110
Q ss_pred eeecccceeccceeeeecCCEEEEEEcCCCCEE-EEeC-CCcEEEEEccCCcEEE--EeecCCceEeeeecccCCCcccc
Q 003171 294 YIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKV-WSAG-FLSFALWDARTRELLK--VFNIDGQIENRVDMSLLPDFAME 369 (842)
Q Consensus 294 ~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v-~s~s-~~tI~lWD~~tg~~l~--~l~~~~~~~~~~~~s~~~~~~~~ 369 (842)
+. ...+..+.+.+.+..+++++++..+ ++.. +++|.+||+.+++.++ .+. .+.....
T Consensus 268 -----g~-~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i~-~~~~~~~------------ 328 (543)
T 1nir_A 268 -----GM-TVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIG-AAPFLHD------------ 328 (543)
T ss_dssp -----EE-CSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCEEEEEE-CCSSCCC------------
T ss_pred -----Cc-ccCccccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcceeEEec-cCcCccC------------
Confidence 00 0000001112346667777765544 3443 4689999998876544 222 1111111
Q ss_pred cceEEEEEecCCCCccceeeeEeecCcceEEec-CC-cEEEEee-cCcc--------ccCCCceEEEEECCC-CcEE-EE
Q 003171 370 DEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGA-AD-AVRRVAA-KGGF--------GDDNRRTEALTTSID-GMIW-TG 436 (842)
Q Consensus 370 ~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~-~~-~v~~v~~-~g~~--------~~~~~~v~al~~s~d-g~l~-Sg 436 (842)
+.|.++++..+++. .+ .+..+.. .+.+ ..|......+ ++|+ |.++ ++
T Consensus 329 -------------------~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~~ph~g~g~~~-~~p~~g~~~~s~ 388 (543)
T 1nir_A 329 -------------------GGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANF-VHPKYGPVWSTS 388 (543)
T ss_dssp -------------------EEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSBCCTTCEEE-EETTTEEEEEEE
T ss_pred -------------------ceECCCCCEEEEEecCCCeEEEEECCCCeEEEeeccCCCCCCCCCccc-CCCCCccEEEec
Confidence 12222222222211 11 1211111 1111 1133333333 4565 6654 55
Q ss_pred e-CCCeEEEEcC-C-------CCeeeeeecCCccEEEEE--ecCCEEEEEe-------cCcEEEEEeCC-Cccc-cc---
Q 003171 437 G-ANGLLLQWDP-N-------GNRLQDFQYLPFAVQCLC--TFGSQIWVGY-------MNGIVQVLDLE-GNLL-GG--- 493 (842)
Q Consensus 437 s-~DgtIrlWD~-~-------g~~l~~l~~H~~~V~sls--~dG~~LasGs-------~DgtIrlWD~~-g~~i-~~--- 493 (842)
+ .|++|++||. + +++++++.+|...+..+. ++|++||+++ .+++|.|||++ ++.. ..
T Consensus 389 ~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~v 468 (543)
T 1nir_A 389 HLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPI 468 (543)
T ss_dssp BSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCCEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECH
T ss_pred cCCCceEEEEEeCCCCCchhcCeEEEEEEcCCCCceEEEcCCCCCcEEEecCCCCCcccCceEEEEECCCCCCCeEEeec
Confidence 4 5899999999 5 789999999988877664 6899999987 37899999987 4443 33
Q ss_pred -----ccccccCEEEEE--eCCCEEEEE-----cCCCCeeeccccCCCCC
Q 003171 494 -----WVAHSSPVIKMA--VGAGYIFTL-----ANHGGIRGWNVTSPGPL 531 (842)
Q Consensus 494 -----l~gH~~~V~sla--~dg~~l~S~-----S~DgtIrvWd~~~~~~~ 531 (842)
+..|...|..++ ++|+.++.+ +.|++|.|||..+...+
T Consensus 469 ~~~~~~~~~~~~~~~~~~~~~g~~~~~s~~~~~~~~~~i~v~D~~t~~~~ 518 (543)
T 1nir_A 469 AEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDDKTLKLK 518 (543)
T ss_dssp HHHHCCCSSCCEEEEEEECSSSSEEEEEEECCTTSCCEEEEEETTTTEEE
T ss_pred hhhcccCCCCCceEeccCCCCCCEEEEEeecCCCCCCeEEEEECCCceEE
Confidence 245677888887 488888744 35899999998775443
|
| >2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A | Back alignment and structure |
|---|
Probab=99.78 E-value=7.6e-17 Score=182.36 Aligned_cols=210 Identities=10% Similarity=-0.025 Sum_probs=155.6
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCC---cEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCCC-EE-EeeCCCc--
Q 003171 191 VSSVMCMVGDEASGVVWSGHRDG---RIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LW-SGSEGGG-- 263 (842)
Q Consensus 191 ~~~V~~la~dpdg~~LaSGs~DG---tIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~-SgS~Dgt-- 263 (842)
...|.+++|+|+|+.|++++.|+ +|++||+.++ + ...+.+|.+.|.+++|+|||+ |+ +++.|+.
T Consensus 178 ~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg--------~-~~~l~~~~~~~~~~~~spdg~~la~~~~~~g~~~ 248 (415)
T 2hqs_A 178 PQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANG--------A-VRQVASFPRHNGAPAFSPDGSKLAFALSKTGSLN 248 (415)
T ss_dssp SSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTC--------C-EEEEECCSSCEEEEEECTTSSEEEEEECTTSSCE
T ss_pred CCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCC--------c-EEEeecCCCcccCEEEcCCCCEEEEEEecCCCce
Confidence 67899999999999999999886 9999999986 3 346788999999999999998 65 7777765
Q ss_pred EEEEeCCCccceeecCCCceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcCCCCEEEEeCC--C--cEEEEEc
Q 003171 264 IKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGF--L--SFALWDA 339 (842)
Q Consensus 264 IrvWd~~t~~~~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s~--~--tI~lWD~ 339 (842)
|++||+.+++. ..+.. + ...+..+++++++..|+.+++ + .|.+||+
T Consensus 249 i~~~d~~~~~~-~~l~~-------------------~----------~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~ 298 (415)
T 2hqs_A 249 LYVMDLASGQI-RQVTD-------------------G----------RSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNI 298 (415)
T ss_dssp EEEEETTTCCE-EECCC-------------------C----------SSCEEEEEECTTSSEEEEEECTTSSCEEEEEET
T ss_pred EEEEECCCCCE-EeCcC-------------------C----------CCcccceEECCCCCEEEEEECCCCCcEEEEEEC
Confidence 99999876432 11111 1 224556777888877766553 2 5777788
Q ss_pred cCCcEEEEeecCCceEeeeecccCCCcccccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEeecCccccCC
Q 003171 340 RTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDN 419 (842)
Q Consensus 340 ~tg~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~ 419 (842)
.++++. .+. .+.
T Consensus 299 ~~~~~~-~l~-------------------------------------------------------------------~~~ 310 (415)
T 2hqs_A 299 NGGAPQ-RIT-------------------------------------------------------------------WEG 310 (415)
T ss_dssp TSSCCE-ECC-------------------------------------------------------------------CSS
T ss_pred CCCCEE-EEe-------------------------------------------------------------------cCC
Confidence 776531 110 011
Q ss_pred CceEEEEECCCCc-EEEEeCC---CeEEEEcCC-CCeeeeeecCCccEEEE--EecCCEEEEEecCc---EEEEEeCCCc
Q 003171 420 RRTEALTTSIDGM-IWTGGAN---GLLLQWDPN-GNRLQDFQYLPFAVQCL--CTFGSQIWVGYMNG---IVQVLDLEGN 489 (842)
Q Consensus 420 ~~v~al~~s~dg~-l~Sgs~D---gtIrlWD~~-g~~l~~l~~H~~~V~sl--s~dG~~LasGs~Dg---tIrlWD~~g~ 489 (842)
..+.+++++|||+ |++++.+ ..|++||+. +++ ..+..|. .+.++ +++|++|++++.++ .|++||++|+
T Consensus 311 ~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~-~~l~~~~-~~~~~~~spdg~~l~~~s~~~~~~~l~~~d~~g~ 388 (415)
T 2hqs_A 311 SQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGV-QVLSSTF-LDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGR 388 (415)
T ss_dssp SEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCE-EECCCSS-SCEEEEECTTSSEEEEEEEETTEEEEEEEETTSC
T ss_pred CcccCeEECCCCCEEEEEECcCCceEEEEEECCCCCE-EEecCCC-CcCCeEEcCCCCEEEEEEcCCCccEEEEEECCCC
Confidence 2344678899998 6666653 589999994 554 5566664 67766 45899999988876 8999999998
Q ss_pred ccccccccccCEEEEEeCCC
Q 003171 490 LLGGWVAHSSPVIKMAVGAG 509 (842)
Q Consensus 490 ~i~~l~gH~~~V~sla~dg~ 509 (842)
....+.+|.+.|.++++.+.
T Consensus 389 ~~~~l~~~~~~v~~~~~~~~ 408 (415)
T 2hqs_A 389 FKARLPATDGQVKFPAWSPY 408 (415)
T ss_dssp CEEECCCSSSEEEEEEECCC
T ss_pred cEEEeeCCCCCCcCCccccc
Confidence 88999999999999998764
|
| >2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A | Back alignment and structure |
|---|
Probab=99.77 E-value=2.7e-17 Score=186.10 Aligned_cols=216 Identities=10% Similarity=-0.035 Sum_probs=155.0
Q ss_pred CCEEEEEeCC------CcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCCC-EEEeeCCC---cEEEEeCCCc
Q 003171 203 SGVVWSGHRD------GRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGG---GIKIWPWEAI 272 (842)
Q Consensus 203 g~~LaSGs~D------GtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~Dg---tIrvWd~~t~ 272 (842)
++.|+.++.+ ++|++||+++ .....+.+|.+.|.+++|||||+ |++++.|+ +|++||+.++
T Consensus 143 ~~~l~~~s~~~~~~~~~~i~i~d~~g---------~~~~~l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg 213 (415)
T 2hqs_A 143 RTRIAYVVQTNGGQFPYELRVSDYDG---------YNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANG 213 (415)
T ss_dssp TCEEEEEEECSSSSCCEEEEEEETTS---------CSCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTC
T ss_pred CCEEEEEEecCCCCccceEEEEcCCC---------CCCEEEeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCC
Confidence 5666666654 7999999986 34677889999999999999998 78888875 9999999775
Q ss_pred cceeecCCCceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcCCCCEEE-EeC-C--CcEEEEEccCCcEEEEe
Q 003171 273 EKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVW-SAG-F--LSFALWDARTRELLKVF 348 (842)
Q Consensus 273 ~~~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~-s~s-~--~tI~lWD~~tg~~l~~l 348 (842)
+.. .+.. + ...+..+++++++.+|+ +++ + ..|.+||+.++++. .+
T Consensus 214 ~~~-~l~~-------------------~----------~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~~-~l 262 (415)
T 2hqs_A 214 AVR-QVAS-------------------F----------PRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIR-QV 262 (415)
T ss_dssp CEE-EEEC-------------------C----------SSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEE-EC
T ss_pred cEE-Eeec-------------------C----------CCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCEE-eC
Confidence 421 1110 1 23456778888888666 544 3 35999999887652 22
Q ss_pred ecCCceEeeeecccCCCcccccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEeecCccccCCCceEEEEEC
Q 003171 349 NIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTS 428 (842)
Q Consensus 349 ~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~al~~s 428 (842)
. .+...+.+++|+
T Consensus 263 ~-------------------------------------------------------------------~~~~~~~~~~~s 275 (415)
T 2hqs_A 263 T-------------------------------------------------------------------DGRSNNTEPTWF 275 (415)
T ss_dssp C-------------------------------------------------------------------CCSSCEEEEEEC
T ss_pred c-------------------------------------------------------------------CCCCcccceEEC
Confidence 1 111234567899
Q ss_pred CCCc-EEEEeC-CC--eEEEEcCCCCeeeeeecCCccEEEEE--ecCCEEEEEecC---cEEEEEeCCCccccccccccc
Q 003171 429 IDGM-IWTGGA-NG--LLLQWDPNGNRLQDFQYLPFAVQCLC--TFGSQIWVGYMN---GIVQVLDLEGNLLGGWVAHSS 499 (842)
Q Consensus 429 ~dg~-l~Sgs~-Dg--tIrlWD~~g~~l~~l~~H~~~V~sls--~dG~~LasGs~D---gtIrlWD~~g~~i~~l~gH~~ 499 (842)
|||+ |++++. ++ .|.+||+.+..+..+..|...+.+++ +||++|++++.+ ..|++||+++.....+..|.
T Consensus 276 pdg~~l~~~s~~~g~~~i~~~d~~~~~~~~l~~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~~~l~~~~- 354 (415)
T 2hqs_A 276 PDSQNLAFTSDQAGRPQVYKVNINGGAPQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQVLSSTF- 354 (415)
T ss_dssp TTSSEEEEEECTTSSCEEEEEETTSSCCEECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEEECCCSS-
T ss_pred CCCCEEEEEECCCCCcEEEEEECCCCCEEEEecCCCcccCeEECCCCCEEEEEECcCCceEEEEEECCCCCEEEecCCC-
Confidence 9998 777775 44 68888995444556666777887664 689999988864 69999999854445566665
Q ss_pred CEEEEE--eCCCEEEEEcCCC---Ceeecccc
Q 003171 500 PVIKMA--VGAGYIFTLANHG---GIRGWNVT 526 (842)
Q Consensus 500 ~V~sla--~dg~~l~S~S~Dg---tIrvWd~~ 526 (842)
.+.+++ +||+.|++++.|+ .|.+||+.
T Consensus 355 ~~~~~~~spdg~~l~~~s~~~~~~~l~~~d~~ 386 (415)
T 2hqs_A 355 LDETPSLAPNGTMVIYSSSQGMGSVLNLVSTD 386 (415)
T ss_dssp SCEEEEECTTSSEEEEEEEETTEEEEEEEETT
T ss_pred CcCCeEEcCCCCEEEEEEcCCCccEEEEEECC
Confidence 777776 5889999988887 69999865
|
| >1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A* | Back alignment and structure |
|---|
Probab=99.76 E-value=5.1e-16 Score=195.73 Aligned_cols=360 Identities=9% Similarity=-0.046 Sum_probs=217.7
Q ss_pred ceeEEEEecCCEEEEecCCCEEEEeCCCCccccccccccccCCCCCCCCCCeeeeeecCCCeEEEEEcCCCCEEEEEeCC
Q 003171 133 CFLRTIVCTEEQLWAGGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGHRD 212 (842)
Q Consensus 133 ~~~~~l~~~~~~l~~~~D~~vrvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~V~~la~dpdg~~LaSGs~D 212 (842)
.+++..+.+++.|....++.|++|+++..... .++ .+ ...|.+++|||||++||+++.+
T Consensus 15 ~~~~~~~~S~~~iaf~~~~~l~~~~~~gg~~~------------------~lt--~~-~~~v~~~~~SPDG~~la~~s~~ 73 (1045)
T 1k32_A 15 NLLLNPDIHGDRIIFVCCDDLWEHDLKSGSTR------------------KIV--SN-LGVINNARFFPDGRKIAIRVMR 73 (1045)
T ss_dssp CCCEEEEEETTEEEEEETTEEEEEETTTCCEE------------------EEE--CS-SSEEEEEEECTTSSEEEEEEEE
T ss_pred ceEeCcEEeCCEEEEEECCcEEEEECCCCcEE------------------Eee--eC-CCcccCeEECCCCCEEEEEEee
Confidence 45666666677666666689999998753221 111 12 6689999999999999988754
Q ss_pred ----C--cEEEEECCCCccCCCCCcceeEEecccCCcE-------EEEEEecCCC-EEEeeCC----C--cEEEEeCCCc
Q 003171 213 ----G--RIMCWKMNARLLDSDDGFGEVLSWQAHRGPV-------LSLCISSYGD-LWSGSEG----G--GIKIWPWEAI 272 (842)
Q Consensus 213 ----G--tIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V-------~slafs~dG~-L~SgS~D----g--tIrvWd~~t~ 272 (842)
+ .|++|++.++ ....+.+|...+ .+++|||||+ +++++.| + .|.+|++.++
T Consensus 74 ~~~~~~~~i~~~d~~~g---------~~~~lt~~~~~~~~~~~~~~~~~~SpDg~ll~~~~~~~~~~~~~~l~~~~~~~g 144 (1045)
T 1k32_A 74 GSSLNTADLYFYNGENG---------EIKRITYFSGKSTGRRMFTDVAGFDPDGNLIISTDAMQPFSSMTCLYRVENDGI 144 (1045)
T ss_dssp STTCCEEEEEEEETTTT---------EEEECCCCCEEEETTEECSEEEEECTTCCEEEEECTTSSSTTCCEEEEEEGGGT
T ss_pred ccCCCCCeEEEEECCCC---------CeEEcccCCCcccccccccccccCCCCCEEEEEECCcCCCcccceEEEEECCCC
Confidence 3 7999999885 367788999998 9999999999 4577755 3 5777777654
Q ss_pred cceeecCCCceeeeEEE----Eeec------------------e-eecccceeccceeeeecCCEEEEEEcCCCCEEEEe
Q 003171 273 EKALSLKPEERHTAALI----VERS------------------Y-IDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSA 329 (842)
Q Consensus 273 ~~~l~~~~~~~~~~~l~----~~~s------------------~-~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~ 329 (842)
+.. .+........+++ +..+ + +...+ +..... ..+...+..+..+++ ..++++
T Consensus 145 ~~~-~l~~~~~~~~~~spG~l~~~~~~~~~~~~~~~~g~~~~~lw~~~~~-~~~~~l-~~~~~~v~~~~~s~d-~l~~~~ 220 (1045)
T 1k32_A 145 NFV-PLNLGPATHILFADGRRVIGRNTFELPHWKGYRGGTRGKIWIEVNS-GAFKKI-VDMSTHVSSPVIVGH-RIYFIT 220 (1045)
T ss_dssp EEE-ECCSCSCSEEEEETTEEEEEESCSCCTTSTTCCSTTCCEEEEEEET-TEEEEE-ECCSSCCEEEEEETT-EEEEEE
T ss_pred CeE-EecCCCcceeeeCCCEEEEeccCCCccccccccCCCcCCEEEECCC-CCeEEC-cCCCCcccceEEeCC-EEEEEE
Confidence 321 1111111111100 0000 0 00000 000000 011234445555544 344444
Q ss_pred C-CCcEEEEEccC-CcEEEEeecCCceEeeeecccCCCccc-ccceEEEEEecC-------CC------------Cccce
Q 003171 330 G-FLSFALWDART-RELLKVFNIDGQIENRVDMSLLPDFAM-EDEFKTKIVTSS-------KK------------DKAQS 387 (842)
Q Consensus 330 s-~~tI~lWD~~t-g~~l~~l~~~~~~~~~~~~s~~~~~~~-~~~~~~~~~s~~-------~~------------~~~~~ 387 (842)
+ +++++||++.. +...+.+..+... ..+.+++.....+ ..+..++++... .. .....
T Consensus 221 ~~dg~~~l~~~~~~g~~~~~l~~~~~~-~~~~~SpDG~~la~~~~~~i~~~d~~~~~l~~l~~~~~~~~~~~~~~~~~v~ 299 (1045)
T 1k32_A 221 DIDGFGQIYSTDLDGKDLRKHTSFTDY-YPRHLNTDGRRILFSKGGSIYIFNPDTEKIEKIEIGDLESPEDRIISIPSKF 299 (1045)
T ss_dssp CTTSSCEEEEEETTSCSCEECCCCCSS-CEEEEEESSSCEEEEETTEEEEECTTTCCEEECCCCCCCBCCSEEEECGGGG
T ss_pred eccCceEEEEEeCCCCcceEecCCCCc-ceeeEcCCCCEEEEEeCCEEEEecCCceEeeeeccCcccccccccccccccc
Confidence 4 46788887653 3333444433321 1223333322110 001112222210 00 01234
Q ss_pred eeeEe-ecCcceEEecCCcEEEEeec-C---ccccCCC-ceEEEEECCCCc-EEEEeCCCeEE-EEcCCCCeeeeeecCC
Q 003171 388 SFGFF-QRSRNAIMGAADAVRRVAAK-G---GFGDDNR-RTEALTTSIDGM-IWTGGANGLLL-QWDPNGNRLQDFQYLP 459 (842)
Q Consensus 388 s~~~~-~~~~~~~~g~~~~v~~v~~~-g---~~~~~~~-~v~al~~s~dg~-l~Sgs~DgtIr-lWD~~g~~l~~l~~H~ 459 (842)
.+.|+ +++..++.+....++.+... + .+..+.. .+..++++ ||+ +++++.++.|. +||+.+.....+.+|.
T Consensus 300 ~~~~S~pdG~~la~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~~~~~~~l~~~~ 378 (1045)
T 1k32_A 300 AEDFSPLDGDLIAFVSRGQAFIQDVSGTYVLKVPEPLRIRYVRRGGD-TKVAFIHGTREGDFLGIYDYRTGKAEKFEENL 378 (1045)
T ss_dssp EEEEEECGGGCEEEEETTEEEEECTTSSBEEECSCCSCEEEEEECSS-SEEEEEEEETTEEEEEEEETTTCCEEECCCCC
T ss_pred eeeecCCCCCEEEEEEcCEEEEEcCCCCceEEccCCCcceEEeeeEc-CCCeEEEEECCCceEEEEECCCCCceEecCCc
Confidence 67788 88776666654444444332 2 1333445 78889999 887 78888888888 9999655555566888
Q ss_pred ccEEEEE--ecCCEEEEEecCcEEEEEeCC-CcccccccccccCEEEEE--eCCCEEEEEcCCC----------Ceeecc
Q 003171 460 FAVQCLC--TFGSQIWVGYMNGIVQVLDLE-GNLLGGWVAHSSPVIKMA--VGAGYIFTLANHG----------GIRGWN 524 (842)
Q Consensus 460 ~~V~sls--~dG~~LasGs~DgtIrlWD~~-g~~i~~l~gH~~~V~sla--~dg~~l~S~S~Dg----------tIrvWd 524 (842)
..+.+++ +||++|++++.+++|++||++ |++...+.+|.+.|.+++ +||+++++++.++ .|++||
T Consensus 379 ~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~~~~~~~~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d 458 (1045)
T 1k32_A 379 GNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYD 458 (1045)
T ss_dssp CSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEE
T ss_pred cceeeeEECCCCCEEEEECCCCeEEEEECCCCceEEeccCCCCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEE
Confidence 8888765 589999999999999999997 666666668999888876 5899999887654 899999
Q ss_pred ccCC
Q 003171 525 VTSP 528 (842)
Q Consensus 525 ~~~~ 528 (842)
+.+.
T Consensus 459 ~~~g 462 (1045)
T 1k32_A 459 MEGR 462 (1045)
T ss_dssp TTTT
T ss_pred CCCC
Confidence 8753
|
| >3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans} | Back alignment and structure |
|---|
Probab=99.72 E-value=9e-16 Score=165.86 Aligned_cols=263 Identities=9% Similarity=0.021 Sum_probs=169.4
Q ss_pred CCEEEE--ecCCCEEEEeCCCCccccccccccccCCCCCCCCCCeeeeeecCCCeEEEEEcCCCCEEEEEeC-CCcEEEE
Q 003171 142 EEQLWA--GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGHR-DGRIMCW 218 (842)
Q Consensus 142 ~~~l~~--~~D~~vrvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~V~~la~dpdg~~LaSGs~-DGtIrlW 218 (842)
.+.+|+ +.++.|++||+++...... + ..+ ..++ +++++|+|+.|+.++. ++.|.+|
T Consensus 9 ~~~~~v~~~~~~~v~~~d~~~~~~~~~-----------------~--~~~-~~~~-~~~~s~dg~~l~~~~~~~~~i~~~ 67 (331)
T 3u4y_A 9 SNFGIVVEQHLRRISFFSTDTLEILNQ-----------------I--TLG-YDFV-DTAITSDCSNVVVTSDFCQTLVQI 67 (331)
T ss_dssp CCEEEEEEGGGTEEEEEETTTCCEEEE-----------------E--ECC-CCEE-EEEECSSSCEEEEEESTTCEEEEE
T ss_pred CCEEEEEecCCCeEEEEeCcccceeee-----------------E--Ecc-CCcc-eEEEcCCCCEEEEEeCCCCeEEEE
Confidence 456665 4588999999976543211 1 111 3455 9999999997777665 8999999
Q ss_pred ECCCCccCCCCCcce-eEEecccCCcEEEEEEecCCC-EEEeeCCC---cEEEEeCCCccceeecCCCceeeeEEEEeec
Q 003171 219 KMNARLLDSDDGFGE-VLSWQAHRGPVLSLCISSYGD-LWSGSEGG---GIKIWPWEAIEKALSLKPEERHTAALIVERS 293 (842)
Q Consensus 219 dl~~g~~~~~~~~~~-~~~l~gH~~~V~slafs~dG~-L~SgS~Dg---tIrvWd~~t~~~~l~~~~~~~~~~~l~~~~s 293 (842)
|+.++ +. ...+..|..++.+++|+|+|+ |+++..++ +|++||+.+++....+..
T Consensus 68 d~~~~--------~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~------------- 126 (331)
T 3u4y_A 68 ETQLE--------PPKVVAIQEGQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPI------------- 126 (331)
T ss_dssp ECSSS--------SCEEEEEEECSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEEEEEEC-------------
T ss_pred ECCCC--------ceeEEecccCCCCccceEECCCCCEEEEecCCCCcccEEEEECCCCCeEEEEEC-------------
Confidence 99987 34 566677777777799999998 66554443 999999976432111100
Q ss_pred eeecccceeccceeeeecCCEEEEEEcCCCCEEEEeC--CCc-EEEEEccCCcEEEEeecCCceEeeeecccCCCccccc
Q 003171 294 YIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG--FLS-FALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMED 370 (842)
Q Consensus 294 ~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s--~~t-I~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~~~~~ 370 (842)
......++.++++..++.+. +.. |.+|++.....+.... .
T Consensus 127 -----------------~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~--~------------------ 169 (331)
T 3u4y_A 127 -----------------PYDAVGIAISPNGNGLILIDRSSANTVRRFKIDADGVLFDTG--Q------------------ 169 (331)
T ss_dssp -----------------CTTEEEEEECTTSSCEEEEEETTTTEEEEEEECTTCCEEEEE--E------------------
T ss_pred -----------------CCCccceEECCCCCEEEEEecCCCceEEEEEECCCCcEeecC--C------------------
Confidence 12345677788877555443 356 9999986532211000 0
Q ss_pred ceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEeecCccccCCCceEEEEECCCCc-EEEEe-CCCeEEEEcC-
Q 003171 371 EFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGM-IWTGG-ANGLLLQWDP- 447 (842)
Q Consensus 371 ~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~al~~s~dg~-l~Sgs-~DgtIrlWD~- 447 (842)
+ ..........++++|||+ ++.++ .++.|++||+
T Consensus 170 --~-----------------------------------------~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~ 206 (331)
T 3u4y_A 170 --E-----------------------------------------FISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQ 206 (331)
T ss_dssp --E-----------------------------------------EECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECS
T ss_pred --c-----------------------------------------cccCCCCccceEECCCCCEEEEEeCCCCeEEEEECC
Confidence 0 000112245688999997 65544 6889999999
Q ss_pred CCCe---eeeeecCCccEEE--EEecCCEEEEEe-cCcEEEEEeCC-Ccc--ccccccc----ccCE-----EEEEeCCC
Q 003171 448 NGNR---LQDFQYLPFAVQC--LCTFGSQIWVGY-MNGIVQVLDLE-GNL--LGGWVAH----SSPV-----IKMAVGAG 509 (842)
Q Consensus 448 ~g~~---l~~l~~H~~~V~s--ls~dG~~LasGs-~DgtIrlWD~~-g~~--i~~l~gH----~~~V-----~sla~dg~ 509 (842)
+++. +..+..+ ..+.+ +++||++|++++ .++.|.+||++ +++ +..+..+ ...+ .++.+|++
T Consensus 207 ~~~~~~~~~~~~~~-~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~ 285 (331)
T 3u4y_A 207 NPENITLLNAVGTN-NLPGTIVVSRDGSTVYVLTESTVDVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGANQMALNKTET 285 (331)
T ss_dssp STTSCEEEEEEECS-SCCCCEEECTTSSEEEEECSSEEEEEEEETTTTEEEEEEEEECCCCCCCGGGTTCCCEEECTTSS
T ss_pred CCcccceeeeccCC-CCCceEEECCCCCEEEEEEcCCCEEEEEECCCCceeeecccccccccCCCCcccccceEECCCCC
Confidence 6777 7777654 34444 456899887765 47899999987 554 3322222 2222 24457888
Q ss_pred EEE-EEcCCCCeeeccccC
Q 003171 510 YIF-TLANHGGIRGWNVTS 527 (842)
Q Consensus 510 ~l~-S~S~DgtIrvWd~~~ 527 (842)
+++ +.+.+++|++||+..
T Consensus 286 ~l~v~~~~~~~v~v~d~~~ 304 (331)
T 3u4y_A 286 KLFISANISRELKVFTISG 304 (331)
T ss_dssp EEEEEETTTTEEEEEETTS
T ss_pred EEEEecCCCCcEEEEEecC
Confidence 876 555677999999865
|
| >2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia} | Back alignment and structure |
|---|
Probab=99.71 E-value=1.3e-15 Score=183.89 Aligned_cols=284 Identities=8% Similarity=-0.030 Sum_probs=179.2
Q ss_pred CCCeEEEEEcCCCCEEEEEeC-CC-----cEEEEECCCCccCCCCCcceeEEecccC-----------------------
Q 003171 191 VSSVMCMVGDEASGVVWSGHR-DG-----RIMCWKMNARLLDSDDGFGEVLSWQAHR----------------------- 241 (842)
Q Consensus 191 ~~~V~~la~dpdg~~LaSGs~-DG-----tIrlWdl~~g~~~~~~~~~~~~~l~gH~----------------------- 241 (842)
...|.+++|+|||++|++++. || +|++||+.++ +....+.+|.
T Consensus 36 ~~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (741)
T 2ecf_A 36 GPTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSG--------QTRLLVDSKVVLPGTETLSDEEKARRERQRIAA 107 (741)
T ss_dssp CCCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTC--------CEEEEECGGGTC--------------------C
T ss_pred CCCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCC--------ceeEccchhhcccccccccchhhhhhhhhhhcc
Confidence 347899999999999999998 88 9999999987 4444444443
Q ss_pred -CcEEEEEEecCCC-EEEeeCCCcEEEEeCCCcc--ceeecCCCceeeeEEEEeeceeecccceeccceeeeecCCEEEE
Q 003171 242 -GPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIE--KALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNL 317 (842)
Q Consensus 242 -~~V~slafs~dG~-L~SgS~DgtIrvWd~~t~~--~~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~l 317 (842)
..|.+++|||||+ |++++. ++|++||+.++. ....+.. + ...+..+
T Consensus 108 ~~~v~~~~~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~~l~~-------------------~----------~~~~~~~ 157 (741)
T 2ecf_A 108 MTGIVDYQWSPDAQRLLFPLG-GELYLYDLKQEGKAAVRQLTH-------------------G----------EGFATDA 157 (741)
T ss_dssp CEESCCCEECTTSSEEEEEET-TEEEEEESSSCSTTSCCBCCC-------------------S----------SSCEEEE
T ss_pred ccCcceeEECCCCCEEEEEeC-CcEEEEECCCCCcceEEEccc-------------------C----------Ccccccc
Confidence 2388999999998 677775 999999997751 1111111 0 2346678
Q ss_pred EEcCCCCEEEEeCCCcEEEEEccCCcEEEEeecCCc-e---------------EeeeecccCCCcccccceEEEEEecCC
Q 003171 318 LSDHSRAKVWSAGFLSFALWDARTRELLKVFNIDGQ-I---------------ENRVDMSLLPDFAMEDEFKTKIVTSSK 381 (842)
Q Consensus 318 as~~~~~~v~s~s~~tI~lWD~~tg~~l~~l~~~~~-~---------------~~~~~~s~~~~~~~~~~~~~~~~s~~~ 381 (842)
+.++++.+|+.++++.|.+||+.+++.......+.. + ...+.++++....+ ......
T Consensus 158 ~~SPDG~~la~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~-------~~~~d~ 230 (741)
T 2ecf_A 158 KLSPKGGFVSFIRGRNLWVIDLASGRQMQLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIA-------YARIDE 230 (741)
T ss_dssp EECTTSSEEEEEETTEEEEEETTTTEEEECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEE-------EEEEEC
T ss_pred cCCCCCCEEEEEeCCcEEEEecCCCCEEEeccCCccceeccccceeeeeccccccceEECCCCCEEE-------EEEEcC
Confidence 888999988888888999999999987654432221 1 01223333222111 000000
Q ss_pred C-Cc------------cceeeeEeecCcceEEecCC---cEEEEee-c-Cccc------cCCCceEEEEECCCCc-EEEE
Q 003171 382 K-DK------------AQSSFGFFQRSRNAIMGAAD---AVRRVAA-K-GGFG------DDNRRTEALTTSIDGM-IWTG 436 (842)
Q Consensus 382 ~-~~------------~~~s~~~~~~~~~~~~g~~~---~v~~v~~-~-g~~~------~~~~~v~al~~s~dg~-l~Sg 436 (842)
. .. ....+.+.. .|... .++.+.. . +... .+...+..+++ |||+ |+++
T Consensus 231 ~~~~~~~~~~~~p~~~~~~~~~~~~------~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~ 303 (741)
T 2ecf_A 231 SPVPVQKRYEVYADRTDVIEQRYPA------AGDANVQVKLGVISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQ 303 (741)
T ss_dssp TTSCEEEEEEECSSCEEEEEEECCB------TTSCCCEEEEEEECSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEE
T ss_pred CCCceEecCCCCCCcccceEeecCC------CCCCCCeeEEEEEECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEE
Confidence 0 00 000000000 00001 1111211 1 2111 24456788999 9998 6655
Q ss_pred eC-----CCeEEEEcC-CCCeeeeeecCCc----cEE--EEEecCCEEEEEecCcEEEEEe--CCCcccccccccccCEE
Q 003171 437 GA-----NGLLLQWDP-NGNRLQDFQYLPF----AVQ--CLCTFGSQIWVGYMNGIVQVLD--LEGNLLGGWVAHSSPVI 502 (842)
Q Consensus 437 s~-----DgtIrlWD~-~g~~l~~l~~H~~----~V~--sls~dG~~LasGs~DgtIrlWD--~~g~~i~~l~gH~~~V~ 502 (842)
+. +..|++||+ +|++...+..|.. .+. ++++||+++++++.||+++||. ++++ ...+..|...|.
T Consensus 304 ~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~~~~~~-~~~l~~~~~~v~ 382 (741)
T 2ecf_A 304 RQSRDQKKLDLVEVTLASNQQRVLAHETSPTWVPLHNSLRFLDDGSILWSSERTGFQHLYRIDSKGK-AAALTHGNWSVD 382 (741)
T ss_dssp EEETTSSEEEEEEEETTTCCEEEEEEEECSSCCCCCSCCEECTTSCEEEEECTTSSCEEEEECSSSC-EEESCCSSSCEE
T ss_pred EecccCCeEEEEEEECCCCceEEEEEcCCCCcCCcCCceEECCCCeEEEEecCCCccEEEEEcCCCC-eeeeeecceEEE
Confidence 43 568999999 6787777766543 223 4567899999999999777775 4567 788888988887
Q ss_pred EE---EeCCCEEE-EEcCCC--CeeeccccC
Q 003171 503 KM---AVGAGYIF-TLANHG--GIRGWNVTS 527 (842)
Q Consensus 503 sl---a~dg~~l~-S~S~Dg--tIrvWd~~~ 527 (842)
++ .+|++.++ +++.|+ ++++|++..
T Consensus 383 ~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~ 413 (741)
T 2ecf_A 383 ELLAVDEKAGLAYFRAGIESARESQIYAVPL 413 (741)
T ss_dssp EEEEEETTTTEEEEEECSSCTTCBEEEEEET
T ss_pred eEeEEeCCCCEEEEEEeCCCCceEEEEEEEc
Confidence 65 35888765 566666 899999764
|
| >2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.71 E-value=1.3e-15 Score=159.91 Aligned_cols=243 Identities=10% Similarity=0.017 Sum_probs=166.9
Q ss_pred ecCCCEEEEeCCCCccccccccccccCCCCCCCCCCeeeeeecCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCC-CccC
Q 003171 148 GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGHRDGRIMCWKMNA-RLLD 226 (842)
Q Consensus 148 ~~D~~vrvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~V~~la~dpdg~~LaSGs~DGtIrlWdl~~-g~~~ 226 (842)
+.|+.|++||+.+..... +. .+ ...|.+++++|+|++|++++ ++.|++||+.+ +
T Consensus 19 ~~~~~i~~~d~~~~~~~~------------------~~--~~-~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~--- 73 (297)
T 2ojh_A 19 SMRSSIEIFNIRTRKMRV------------------VW--QT-PELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDP--- 73 (297)
T ss_dssp CCCEEEEEEETTTTEEEE------------------EE--EE-SSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCC---
T ss_pred CcceeEEEEeCCCCceee------------------ec--cC-CcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCC---
Confidence 357899999997643211 11 23 67899999999999999987 78999999988 6
Q ss_pred CCCCcceeEEeccc-CCcEEEEEEecCCC-EEEee--CCCcEEEEeCCCccce-eecCCCceeeeEEEEeeceeecccce
Q 003171 227 SDDGFGEVLSWQAH-RGPVLSLCISSYGD-LWSGS--EGGGIKIWPWEAIEKA-LSLKPEERHTAALIVERSYIDLRSHL 301 (842)
Q Consensus 227 ~~~~~~~~~~l~gH-~~~V~slafs~dG~-L~SgS--~DgtIrvWd~~t~~~~-l~~~~~~~~~~~l~~~~s~~~l~~~~ 301 (842)
+......+| ...|.+++|+|+|+ |++++ .++.++||.++..... ..+..
T Consensus 74 -----~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~--------------------- 127 (297)
T 2ojh_A 74 -----SPEKVDTGFATICNNDHGISPDGALYAISDKVEFGKSAIYLLPSTGGTPRLMTK--------------------- 127 (297)
T ss_dssp -----SCEECCCTTCCCBCSCCEECTTSSEEEEEECTTTSSCEEEEEETTCCCCEECCS---------------------
T ss_pred -----CceEeccccccccccceEECCCCCEEEEEEeCCCCcceEEEEECCCCceEEeec---------------------
Confidence 444455566 47899999999998 67777 4567777776431111 11100
Q ss_pred eccceeeeecCCEEEEEEcCCCCEEE-EeC-CCcEEEEEcc--CCcEEEEeecCCceEeeeecccCCCcccccceEEEEE
Q 003171 302 SVNGFSSILTSDIKNLLSDHSRAKVW-SAG-FLSFALWDAR--TRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIV 377 (842)
Q Consensus 302 ~~~~~~~~~s~~v~~las~~~~~~v~-s~s-~~tI~lWD~~--tg~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~ 377 (842)
...+..++.++++..++ ++. ++.++||++. +++. ..
T Consensus 128 ---------~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~~-~~------------------------------ 167 (297)
T 2ojh_A 128 ---------NLPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGVE-TR------------------------------ 167 (297)
T ss_dssp ---------SSSEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCCE-EE------------------------------
T ss_pred ---------CCCccceEECCCCCEEEEEECCCCceEEEEEECCCCcc-eE------------------------------
Confidence 11245566777777665 443 5678888753 2221 00
Q ss_pred ecCCCCccceeeeEeecCcceEEecCCcEEEEeecCccccCCCceEEEEECCCCc-EEEEe-CCCeEEEEcC--CCCeee
Q 003171 378 TSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGM-IWTGG-ANGLLLQWDP--NGNRLQ 453 (842)
Q Consensus 378 s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~al~~s~dg~-l~Sgs-~DgtIrlWD~--~g~~l~ 453 (842)
+..+...+..++++|+|. ++.++ .++.+++|++ .+..+.
T Consensus 168 -------------------------------------~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~ 210 (297)
T 2ojh_A 168 -------------------------------------LTHGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVE 210 (297)
T ss_dssp -------------------------------------CCCSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEE
T ss_pred -------------------------------------cccCCCccccceECCCCCEEEEEecCCCCccEEEECCCCCCcE
Confidence 111223455678899997 66555 5889999987 467788
Q ss_pred eeecCCccEEEEE--ecCCEEEEEecC-----------cEEEEEeCC-Ccc--cccccccccCEEEEE--eCCCEEEEEc
Q 003171 454 DFQYLPFAVQCLC--TFGSQIWVGYMN-----------GIVQVLDLE-GNL--LGGWVAHSSPVIKMA--VGAGYIFTLA 515 (842)
Q Consensus 454 ~l~~H~~~V~sls--~dG~~LasGs~D-----------gtIrlWD~~-g~~--i~~l~gH~~~V~sla--~dg~~l~S~S 515 (842)
.+..|...+.+++ ++|++|++++.+ +.|.+||++ ++. +..+.+|...|.+++ +++++|++++
T Consensus 211 ~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~ 290 (297)
T 2ojh_A 211 RITDSAYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVETLFDLFGGQGTMNSPNWSPDGDEFAYVR 290 (297)
T ss_dssp ECCCCSEEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSCEEEEEEEESTTTSCSCCBCTTSSEEEEEE
T ss_pred EEecCCcccCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCCceeeeccCCCCcccccceECCCCCEEEEEE
Confidence 8888888888765 589999888865 679999997 443 445558888888776 5788898887
Q ss_pred CCC
Q 003171 516 NHG 518 (842)
Q Consensus 516 ~Dg 518 (842)
.|.
T Consensus 291 ~~~ 293 (297)
T 2ojh_A 291 YFP 293 (297)
T ss_dssp ECC
T ss_pred ecc
Confidence 664
|
| >3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A* | Back alignment and structure |
|---|
Probab=99.68 E-value=2.6e-14 Score=155.20 Aligned_cols=263 Identities=9% Similarity=0.066 Sum_probs=172.8
Q ss_pred eEEEEec--CCEEEEec--------CCCEEEEeCCCCccccccccccccCCCCCCCCCCeeeeeecCCCeEEEEEcCCCC
Q 003171 135 LRTIVCT--EEQLWAGG--------ENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASG 204 (842)
Q Consensus 135 ~~~l~~~--~~~l~~~~--------D~~vrvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~V~~la~dpdg~ 204 (842)
...++.+ ++.+|++. ++.|.+||.++...... + . . ...+.+++++|+|+
T Consensus 43 ~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~-----------------~-~--~-~~~~~~~~~s~dg~ 101 (353)
T 3vgz_A 43 AYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQA-----------------I-H--N-DLKPFGATINNTTQ 101 (353)
T ss_dssp EEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEE-----------------E-E--E-SSCCCSEEEETTTT
T ss_pred ccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEE-----------------E-e--c-CCCcceEEECCCCC
Confidence 4445544 55788754 66899999976543211 1 1 1 23467789999999
Q ss_pred EEE-EEeCCCcEEEEECCCCccCCCCCcceeEEecccCC---------cEEEEEEecCCC-EEEee--CCCcEEEEeCCC
Q 003171 205 VVW-SGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRG---------PVLSLCISSYGD-LWSGS--EGGGIKIWPWEA 271 (842)
Q Consensus 205 ~La-SGs~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~---------~V~slafs~dG~-L~SgS--~DgtIrvWd~~t 271 (842)
.++ ++..++.|.+||..++ +....+..|.. .+.+++|+|+|+ ++.++ .++.|.+||..+
T Consensus 102 ~l~v~~~~~~~v~~~d~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~ 173 (353)
T 3vgz_A 102 TLWFGNTVNSAVTAIDAKTG--------EVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGN 173 (353)
T ss_dssp EEEEEETTTTEEEEEETTTC--------CEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTT
T ss_pred EEEEEecCCCEEEEEeCCCC--------eeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCC
Confidence 555 4556799999999987 45555554432 278999999998 65544 588999999976
Q ss_pred ccceeecCCCceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcCCCCEEEEeC-CCcEEEEEccCCcEEEEeec
Q 003171 272 IEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVFNI 350 (842)
Q Consensus 272 ~~~~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s-~~tI~lWD~~tg~~l~~l~~ 350 (842)
++....+... ......++.++++..++.+. ++.|.+||+.+++.+..+..
T Consensus 174 ~~~~~~~~~~-----------------------------~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~ 224 (353)
T 3vgz_A 174 IKLKTAIQNT-----------------------------GKMSTGLALDSEGKRLYTTNADGELITIDTADNKILSRKKL 224 (353)
T ss_dssp TEEEEEECCC-----------------------------CTTCCCCEEETTTTEEEEECTTSEEEEEETTTTEEEEEEEC
T ss_pred CceEEEecCC-----------------------------CCccceEEECCCCCEEEEEcCCCeEEEEECCCCeEEEEEEc
Confidence 5432211100 11123455667777777665 46899999999887655432
Q ss_pred CCceEeeeecccCCCcccccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEeecCccccCCCceEEEEECCC
Q 003171 351 DGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSID 430 (842)
Q Consensus 351 ~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~al~~s~d 430 (842)
... .+...+..++++||
T Consensus 225 ~~~---------------------------------------------------------------~~~~~~~~~~~s~d 241 (353)
T 3vgz_A 225 LDD---------------------------------------------------------------GKEHFFINISLDTA 241 (353)
T ss_dssp CCS---------------------------------------------------------------SSCCCEEEEEEETT
T ss_pred CCC---------------------------------------------------------------CCCcccceEEECCC
Confidence 100 01122445778888
Q ss_pred Cc-EEEEeC-CCeEEEEcC-CCCeeeeeecCCccEEEEEecCCEEEEEe-cCcEEEEEeCC-CcccccccccccCEEEEE
Q 003171 431 GM-IWTGGA-NGLLLQWDP-NGNRLQDFQYLPFAVQCLCTFGSQIWVGY-MNGIVQVLDLE-GNLLGGWVAHSSPVIKMA 505 (842)
Q Consensus 431 g~-l~Sgs~-DgtIrlWD~-~g~~l~~l~~H~~~V~sls~dG~~LasGs-~DgtIrlWD~~-g~~i~~l~gH~~~V~sla 505 (842)
|. ++.++. ++.|.+||+ +++.+..+..+...-.+++++|++++++. .+++|.+||++ ++.+..+..+. .+.+++
T Consensus 242 g~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~-~~~~~~ 320 (353)
T 3vgz_A 242 RQRAFITDSKAAEVLVVDTRNGNILAKVAAPESLAVLFNPARNEAYVTHRQAGKVSVIDAKSYKVVKTFDTPT-HPNSLA 320 (353)
T ss_dssp TTEEEEEESSSSEEEEEETTTCCEEEEEECSSCCCEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEEECCS-EEEEEE
T ss_pred CCEEEEEeCCCCEEEEEECCCCcEEEEEEcCCCceEEECCCCCEEEEEECCCCeEEEEECCCCeEEEEEecCC-CCCeEE
Confidence 87 665554 589999999 78888877754443345677899777766 68999999997 67666665543 567776
Q ss_pred --eCCCEEEEEcCCCC
Q 003171 506 --VGAGYIFTLANHGG 519 (842)
Q Consensus 506 --~dg~~l~S~S~Dgt 519 (842)
+|+++++.+..++.
T Consensus 321 ~s~dg~~l~v~~~~~~ 336 (353)
T 3vgz_A 321 LSADGKTLYVSVKQKS 336 (353)
T ss_dssp ECTTSCEEEEEEECCC
T ss_pred EcCCCCEEEEEEcccc
Confidence 47887776655543
|
| >1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1 | Back alignment and structure |
|---|
Probab=99.68 E-value=4.9e-15 Score=159.82 Aligned_cols=268 Identities=12% Similarity=0.167 Sum_probs=164.8
Q ss_pred EEEE--ecCCCEEEEeCCCCccccccccccccCCCCCCCCCCeeeeeecCCCeEEEEEcCCCCEEEEEeCC-CcEEEEEC
Q 003171 144 QLWA--GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGHRD-GRIMCWKM 220 (842)
Q Consensus 144 ~l~~--~~D~~vrvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~V~~la~dpdg~~LaSGs~D-GtIrlWdl 220 (842)
.+|+ +.|+.|++||+....... .... ..+...+.+++++|+|++|++++.+ +.|++|++
T Consensus 6 ~l~~~~~~~~~v~~~~~~~~~~~~-----------------~~~~-~~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~ 67 (343)
T 1ri6_A 6 TVYIASPESQQIHVWNLNHEGALT-----------------LTQV-VDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRI 67 (343)
T ss_dssp EEEEEEGGGTEEEEEEECTTSCEE-----------------EEEE-EECSSCCCCEEECTTSSEEEEEETTTTEEEEEEE
T ss_pred EEEEeCCCCCeEEEEEECCCCcEE-----------------Eeee-EecCCCCceEEECCCCCEEEEeecCCCeEEEEEe
Confidence 3454 358999999985311000 0111 1115578899999999999999887 99999999
Q ss_pred C--CCccCCCCCcceeEEecccCCcEEEEEEecCCC-EEEe-eCCCcEEEEeCCCccceeecCCCceeeeEEEEeeceee
Q 003171 221 N--ARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSG-SEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYID 296 (842)
Q Consensus 221 ~--~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~Sg-S~DgtIrvWd~~t~~~~l~~~~~~~~~~~l~~~~s~~~ 296 (842)
. ++. ...+..+..+. .+.+++|+|+|+ |+++ ..++.|++||+..+. .... ...
T Consensus 68 ~~~~~~------~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~-~~~~------~~~--------- 124 (343)
T 1ri6_A 68 APDDGA------LTFAAESALPG-SLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGL-PVGV------VDV--------- 124 (343)
T ss_dssp CTTTCC------EEEEEEEECSS-CCSEEEECTTSSEEEEEETTTTEEEEEEEETTE-EEEE------EEE---------
T ss_pred cCCCCc------eeeccccccCC-CCcEEEEcCCCCEEEEEecCCCeEEEEECCCCc-cccc------ccc---------
Confidence 7 431 12333444444 788999999998 6554 458999999984211 0000 000
Q ss_pred cccceeccceeeeecCCEEEEEEcCCCCEEEEeC--CCcEEEEEccC-CcEEEEeecCCceEeeeecccCCCcccccceE
Q 003171 297 LRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG--FLSFALWDART-RELLKVFNIDGQIENRVDMSLLPDFAMEDEFK 373 (842)
Q Consensus 297 l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s--~~tI~lWD~~t-g~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~ 373 (842)
+.. ...+..++.++++..++++. ++.|.+||+.+ +++...... .
T Consensus 125 ~~~-----------~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~----------------------~ 171 (343)
T 1ri6_A 125 VEG-----------LDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPA----------------------E 171 (343)
T ss_dssp ECC-----------CTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEE----------------------E
T ss_pred ccC-----------CCCceEEEECCCCCEEEEecCCCCEEEEEEecCCCceeeeccc----------------------c
Confidence 000 12344566777777666654 57899999987 554221100 0
Q ss_pred EEEEecCCCCccceeeeEeecCcceEEecCCcEEEEeecCccccCCCceEEEEECCCCc-EEEEe-CCCeEEEEcCC---
Q 003171 374 TKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGM-IWTGG-ANGLLLQWDPN--- 448 (842)
Q Consensus 374 ~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~al~~s~dg~-l~Sgs-~DgtIrlWD~~--- 448 (842)
... .....+..++++|+|. +++++ .++.|++||++
T Consensus 172 ---~~~-------------------------------------~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~ 211 (343)
T 1ri6_A 172 ---VTT-------------------------------------VEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPH 211 (343)
T ss_dssp ---EEC-------------------------------------STTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTT
T ss_pred ---ccc-------------------------------------CCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCC
Confidence 000 0012344678999997 65544 78999999983
Q ss_pred CCe--eeeee----cC--CccEEEE--EecCCEEEEEe-cCcEEEEEeCC--C---cccccccccccCEEEEE--eCCCE
Q 003171 449 GNR--LQDFQ----YL--PFAVQCL--CTFGSQIWVGY-MNGIVQVLDLE--G---NLLGGWVAHSSPVIKMA--VGAGY 510 (842)
Q Consensus 449 g~~--l~~l~----~H--~~~V~sl--s~dG~~LasGs-~DgtIrlWD~~--g---~~i~~l~gH~~~V~sla--~dg~~ 510 (842)
|+. ++.+. ++ ...+.++ +++|++|+++. .++.|++||++ + +.+..+..+.. +.+++ +++++
T Consensus 212 g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~-~~~~~~s~dg~~ 290 (343)
T 1ri6_A 212 GNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQ-PRGFNVDHSGKY 290 (343)
T ss_dssp SCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSSS-CCCEEECTTSSE
T ss_pred CcEEEEeeccccCccccccCCccceEECCCCCEEEEEecCCCEEEEEEEcCCCCceEEeeeecCCCc-cceEEECCCCCE
Confidence 332 22222 11 2244445 45788887544 79999999986 2 23444544444 66666 47888
Q ss_pred EEEEc-CCCCeeecccc
Q 003171 511 IFTLA-NHGGIRGWNVT 526 (842)
Q Consensus 511 l~S~S-~DgtIrvWd~~ 526 (842)
++.++ .|+.|++|++.
T Consensus 291 l~~~~~~~~~v~v~~~d 307 (343)
T 1ri6_A 291 LIAAGQKSHHISVYEIV 307 (343)
T ss_dssp EEEECTTTCEEEEEEEE
T ss_pred EEEecCCCCeEEEEEEc
Confidence 88777 68999999764
|
| >3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A | Back alignment and structure |
|---|
Probab=99.66 E-value=5.6e-15 Score=173.79 Aligned_cols=257 Identities=11% Similarity=0.011 Sum_probs=164.3
Q ss_pred CCCeEEEEEcCCCCEEEEEeC-CCcEEEEECCCCccCCCCCcceeEEecccC-CcEEEEEEecCCC-EEEeeC---CCcE
Q 003171 191 VSSVMCMVGDEASGVVWSGHR-DGRIMCWKMNARLLDSDDGFGEVLSWQAHR-GPVLSLCISSYGD-LWSGSE---GGGI 264 (842)
Q Consensus 191 ~~~V~~la~dpdg~~LaSGs~-DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~-~~V~slafs~dG~-L~SgS~---DgtI 264 (842)
..+|.+++++|||+.||+++. ||+++||+++++ ....+..|. ..|.+++|||| + +++++. +...
T Consensus 21 ~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g---------~~~~lt~~~~~~~~~~~~spd-~~l~~~~~~~g~~~~ 90 (582)
T 3o4h_A 21 AVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGG---------ETVKLNREPINSVLDPHYGVG-RVILVRDVSKGAEQH 90 (582)
T ss_dssp HSCEEEEEEEETTTEEEEEEEETTEEEEEEEETT---------EEEECCSSCCSEECEECTTCS-EEEEEEECSTTSCCE
T ss_pred ccchheeecCCCCCeEEEEEccCCceeEEEEcCC---------CcEeeecccccccccccCCCC-eEEEEeccCCCCcce
Confidence 568999999999999999887 999999999765 345555555 68999999999 7 456664 5667
Q ss_pred EEEeCCC--ccceeecCCCceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcCCCC--EEEEeCCCcEEEEEcc
Q 003171 265 KIWPWEA--IEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRA--KVWSAGFLSFALWDAR 340 (842)
Q Consensus 265 rvWd~~t--~~~~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~--~v~s~s~~tI~lWD~~ 340 (842)
+||.+.. ......+.... .....+.++++. .++++..+.+.|||+.
T Consensus 91 ~l~~~~~~~~g~~~~l~~~~------------------------------~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~ 140 (582)
T 3o4h_A 91 ALFKVNTSRPGEEQRLEAVK------------------------------PMRILSGVDTGEAVVFTGATEDRVALYALD 140 (582)
T ss_dssp EEEEEETTSTTCCEECTTSC------------------------------SBEEEEEEECSSCEEEEEECSSCEEEEEEE
T ss_pred EEEEEeccCCCccccccCCC------------------------------CceeeeeCCCCCeEEEEecCCCCceEEEcc
Confidence 7776543 11111111100 011222233332 3444445566699999
Q ss_pred CCcEEEEeecCCceEeeeecccCCCcccccceEEEEEecCCCCccceeeeEeecCcceEEecC-----CcEEEEee-cC-
Q 003171 341 TRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAA-----DAVRRVAA-KG- 413 (842)
Q Consensus 341 tg~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~-----~~v~~v~~-~g- 413 (842)
++++......+. ..+.+++ +++.++.+.. ..++.+.. .|
T Consensus 141 ~g~~~~l~~~~~---~~~~~sp-------------------------------DG~~la~~~~~~~~~~~i~~~d~~~g~ 186 (582)
T 3o4h_A 141 GGGLRELARLPG---FGFVSDI-------------------------------RGDLIAGLGFFGGGRVSLFTSNLSSGG 186 (582)
T ss_dssp TTEEEEEEEESS---CEEEEEE-------------------------------ETTEEEEEEEEETTEEEEEEEETTTCC
T ss_pred CCcEEEeecCCC---ceEEECC-------------------------------CCCEEEEEEEcCCCCeEEEEEcCCCCC
Confidence 998755543322 1222222 2222221111 11222221 12
Q ss_pred --ccccCCCceEEEEECCCCc-EEEEeCCC--eEEEEcC-CCCeeeeeecCCccEEE----------EEecCCEEEEEec
Q 003171 414 --GFGDDNRRTEALTTSIDGM-IWTGGANG--LLLQWDP-NGNRLQDFQYLPFAVQC----------LCTFGSQIWVGYM 477 (842)
Q Consensus 414 --~~~~~~~~v~al~~s~dg~-l~Sgs~Dg--tIrlWD~-~g~~l~~l~~H~~~V~s----------ls~dG~~LasGs~ 477 (842)
.+..+...+..++|||||+ |+++..++ .|++||+ +|++. .+.+|...|.+ +++||..+++++.
T Consensus 187 ~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~ 265 (582)
T 3o4h_A 187 LRVFDSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVE-DLELPSKDFSSYRPTAITWLGYLPDGRLAVVARR 265 (582)
T ss_dssp CEEECCSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEE-ECCCSCSHHHHHCCSEEEEEEECTTSCEEEEEEE
T ss_pred ceEeecCCCccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEE-EccCCCcChhhhhhccccceeEcCCCcEEEEEEc
Confidence 2345566778899999998 77777788 8999999 45665 77777765542 5678988899999
Q ss_pred CcEEEEEeCCCcccccccccccCEEEEEe-CCCEEEEEcCCCC---eeecccc
Q 003171 478 NGIVQVLDLEGNLLGGWVAHSSPVIKMAV-GAGYIFTLANHGG---IRGWNVT 526 (842)
Q Consensus 478 DgtIrlWD~~g~~i~~l~gH~~~V~sla~-dg~~l~S~S~Dgt---IrvWd~~ 526 (842)
|++++||++ |+++... .+.|.++++ +++.+++++.+.+ |.+|+..
T Consensus 266 ~g~~~l~~~-g~~~~~~---~~~v~~~~~sdg~~l~~~s~~~~p~~l~~~d~~ 314 (582)
T 3o4h_A 266 EGRSAVFID-GERVEAP---QGNHGRVVLWRGKLVTSHTSLSTPPRIVSLPSG 314 (582)
T ss_dssp TTEEEEEET-TEEECCC---SSEEEEEEEETTEEEEEEEETTEEEEEEEETTC
T ss_pred CCcEEEEEE-CCeeccC---CCceEEEEecCCEEEEEEcCCCCCCeEEEEcCC
Confidence 999999999 8776533 355766653 7778888888765 5666643
|
| >1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24 | Back alignment and structure |
|---|
Probab=99.66 E-value=2.2e-15 Score=181.28 Aligned_cols=319 Identities=8% Similarity=-0.027 Sum_probs=175.5
Q ss_pred CCEEEEecCCCEEEEeCCCCccccccccccccCCCCCCCCCCeeeeeecC---CCeEEEEEcCCCCEEEEEeCC------
Q 003171 142 EEQLWAGGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGV---SSVMCMVGDEASGVVWSGHRD------ 212 (842)
Q Consensus 142 ~~~l~~~~D~~vrvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~---~~V~~la~dpdg~~LaSGs~D------ 212 (842)
+..++.+.|++|++||+++...... + . .+ . ..|.+++|||||++|++++.|
T Consensus 28 g~~~~~~~dg~i~~~d~~~g~~~~~-----------------~-~-~~-~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~ 87 (723)
T 1xfd_A 28 TEFIYREQKGTVRLWNVETNTSTVL-----------------I-E-GK-KIESLRAIRYEISPDREYALFSYNVEPIYQH 87 (723)
T ss_dssp SCBCCCCSSSCEEEBCGGGCCCEEE-----------------E-C-TT-TTTTTTCSEEEECTTSSEEEEEESCCCCSSS
T ss_pred CcEEEEeCCCCEEEEECCCCcEEEE-----------------e-c-cc-cccccccceEEECCCCCEEEEEecCccceee
Confidence 3333345788999999976543211 0 0 01 1 148899999999999999875
Q ss_pred ---CcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCCC-EEEeeCCCcEEEEeCCCccceeecCCCceeeeEE
Q 003171 213 ---GRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEKALSLKPEERHTAAL 288 (842)
Q Consensus 213 ---GtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~~t~~~~l~~~~~~~~~~~l 288 (842)
+.|.+||+.++. ...+....+|...|.+++|||||+ |++++. +.|++||+.+++.............
T Consensus 88 ~~~~~i~~~d~~~~~------~~~l~~~~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~g~~~~~~~~~~~~~~-- 158 (723)
T 1xfd_A 88 SYTGYYVLSKIPHGD------PQSLDPPEVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVGKQAIRVVSTGKEGVI-- 158 (723)
T ss_dssp CCCSEEEEEESSSCC------CEECCCTTCCSCCCSBCCBCSSTTCEEEEET-TEEEEESSSSSCCEEEECCCBTTTE--
T ss_pred cceeeEEEEECCCCc------eEeccCCccccccccccEECCCCCEEEEEEC-CeEEEEECCCCceEEEecCCCCCce--
Confidence 678899999862 012222345666799999999997 777775 7999999987543211110000000
Q ss_pred EEeeceeecccceecccee-eeecCCEEEEEEcCCCCEEEEeCC--CcEEEEEccCCcEEEEeecCCceEeeeecccCCC
Q 003171 289 IVERSYIDLRSHLSVNGFS-SILTSDIKNLLSDHSRAKVWSAGF--LSFALWDARTRELLKVFNIDGQIENRVDMSLLPD 365 (842)
Q Consensus 289 ~~~~s~~~l~~~~~~~~~~-~~~s~~v~~las~~~~~~v~s~s~--~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~ 365 (842)
+.++ ..-+- .-....+..++.++++..|+.++. ..+++|++..... ..... ...+.++....
T Consensus 159 --------~~g~--~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~----~~~~~-~~~~~~~~~G~ 223 (723)
T 1xfd_A 159 --------YNGL--SDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTG----SIYPT-VKPYHYPKAGS 223 (723)
T ss_dssp --------EEEE--CCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSS----SSSCC-CEEEECCBTTS
T ss_pred --------ECcc--cceeEEEEeccCcceEEECCCCCEEEEEEECCCccceEEeeccCC----cCCCc-ceeccCCCCCC
Confidence 0000 00000 000012356778888888877653 3577777542110 00000 01112221111
Q ss_pred cccccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEeecCccccCCCceEEEEECCCCcE-EEEeC----CC
Q 003171 366 FAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGMI-WTGGA----NG 440 (842)
Q Consensus 366 ~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~al~~s~dg~l-~Sgs~----Dg 440 (842)
. .....++++....... ...+.....+..+...+..+++||||++ ++.+. +.
T Consensus 224 ~--~~~~~l~~~d~~~~~~---------------------~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~ 280 (723)
T 1xfd_A 224 E--NPSISLHVIGLNGPTH---------------------DLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVS 280 (723)
T ss_dssp C--CCEEEEEEEESSSSCC---------------------CEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEE
T ss_pred C--CCeeEEEEEECCCCce---------------------eEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeE
Confidence 0 0011122222110000 0000000011223456788999999984 44432 35
Q ss_pred eEEEEcC-CCCeeeeeec-CCccEE------EEEecCCEEEE--EecCc------EEEEEe-CCCcc---cccccccccC
Q 003171 441 LLLQWDP-NGNRLQDFQY-LPFAVQ------CLCTFGSQIWV--GYMNG------IVQVLD-LEGNL---LGGWVAHSSP 500 (842)
Q Consensus 441 tIrlWD~-~g~~l~~l~~-H~~~V~------sls~dG~~Las--Gs~Dg------tIrlWD-~~g~~---i~~l~gH~~~ 500 (842)
.|++||+ +|++...+.. |..++. .+++||++|+. +..++ .|.+|| .++.. ...+..+...
T Consensus 281 ~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~ 360 (723)
T 1xfd_A 281 ILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSGDWD 360 (723)
T ss_dssp EEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCCSSSC
T ss_pred EEEEEeCCCCcceEEEEeccCCEEeccCCCceEcCCCCeEEEEEecccCCCcceeEEEEEeccCCCCccceeEeecCCeE
Confidence 7999999 6777766654 334332 45679997665 34566 677888 45444 6666654444
Q ss_pred EEE---EEeCCCEEEEEcCC---CCeeeccccC
Q 003171 501 VIK---MAVGAGYIFTLANH---GGIRGWNVTS 527 (842)
Q Consensus 501 V~s---la~dg~~l~S~S~D---gtIrvWd~~~ 527 (842)
+.. +.+||+.|+..+.+ +++++|++..
T Consensus 361 ~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~~~ 393 (723)
T 1xfd_A 361 VTKILAYDEKGNKIYFLSTEDLPRRRQLYSANT 393 (723)
T ss_dssp EEEEEEEETTTTEEEEEESSSCTTCCEEEEECS
T ss_pred EEeeeEEcCCCCEEEEEEcCCCCcceEEEEEeC
Confidence 543 44689998766555 7899999864
|
| >2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A* | Back alignment and structure |
|---|
Probab=99.66 E-value=8.4e-15 Score=175.98 Aligned_cols=275 Identities=10% Similarity=0.035 Sum_probs=177.3
Q ss_pred eeEEEEecC-CEEEEecCCCEEEEeCCCCccccccccccccCCCCCCCCCCeeeeeecCCCeEEEEEcCCCCEEEEEeCC
Q 003171 134 FLRTIVCTE-EQLWAGGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGHRD 212 (842)
Q Consensus 134 ~~~~l~~~~-~~l~~~~D~~vrvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~V~~la~dpdg~~LaSGs~D 212 (842)
.+..++.+. +.+..+.++.|++||+.+..... + ..+...+.+++|+|||+.|+++ .|
T Consensus 83 ~v~~~~~spd~~~~~~~~~~i~~~d~~~~~~~~------------------l---~~~~~~~~~~~~SpdG~~la~~-~~ 140 (706)
T 2z3z_A 83 PSFRTLDAGRGLVVLFTQGGLVGFDMLARKVTY------------------L---FDTNEETASLDFSPVGDRVAYV-RN 140 (706)
T ss_dssp CCEEEEETTTTEEEEEETTEEEEEETTTTEEEE------------------E---ECCTTCCTTCEECTTSSEEEEE-ET
T ss_pred CceeEEECCCCeEEEEECCEEEEEECCCCceEE------------------c---cCCcccccCCcCCCCCCEEEEE-EC
Confidence 355566554 46666788999999997643211 1 1114467788999999999995 78
Q ss_pred CcEEEEECCC-----CccCCCCCcceeEEecccCCc--------------EEEEEEecCCC-EEEee-------------
Q 003171 213 GRIMCWKMNA-----RLLDSDDGFGEVLSWQAHRGP--------------VLSLCISSYGD-LWSGS------------- 259 (842)
Q Consensus 213 GtIrlWdl~~-----g~~~~~~~~~~~~~l~gH~~~--------------V~slafs~dG~-L~SgS------------- 259 (842)
+.|++|++.+ + +.......+... +.+++|||||+ |++++
T Consensus 141 ~~i~v~~~~~~~~~~g--------~~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~ 212 (706)
T 2z3z_A 141 HNLYIARGGKLGEGMS--------RAIAVTIDGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVD 212 (706)
T ss_dssp TEEEEEECBCTTSCCC--------CCEESCSCCBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEE
T ss_pred CeEEEEecCcccccCC--------CcEEeccCCCCCeEcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeec
Confidence 9999999987 6 333333333333 48999999998 77776
Q ss_pred --------------------CCCcEEEEeCCCccceeecCCCceeeeEEEEeeceeecccceeccceeeeecCCEEEEEE
Q 003171 260 --------------------EGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLS 319 (842)
Q Consensus 260 --------------------~DgtIrvWd~~t~~~~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las 319 (842)
.+..|++||+.+++........ .+ ...+..++.
T Consensus 213 ~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~~-----------------~~----------~~~~~~~~~ 265 (706)
T 2z3z_A 213 YHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQTGE-----------------PK----------EKFLTNLSW 265 (706)
T ss_dssp CCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCCCS-----------------CT----------TCEEEEEEE
T ss_pred cCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeeccCC-----------------CC----------ceeEeeEEE
Confidence 4467999998764321110000 00 123556777
Q ss_pred cCCCCEEEEeC-CC-----cEEEEEccCCcEEEEeecCCceEeeeecccCCCcccccceEEEEEecCCCCccceeeeEee
Q 003171 320 DHSRAKVWSAG-FL-----SFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQ 393 (842)
Q Consensus 320 ~~~~~~v~s~s-~~-----tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~ 393 (842)
++++..|+.++ +. +|.+||+.+++.++.+.... ..
T Consensus 266 spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~--------------------------~~------------- 306 (706)
T 2z3z_A 266 SPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVET--------------------------DK------------- 306 (706)
T ss_dssp CTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEE--------------------------CS-------------
T ss_pred ECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEcc--------------------------CC-------------
Confidence 78887776643 32 79999999984333321100 00
Q ss_pred cCcceEEecCCcEEEEeecCccccCCCceEEEEECC--CCc-EEEEeCCCeEEEEcC--CCCeeeeeecCCccEEE---E
Q 003171 394 RSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSI--DGM-IWTGGANGLLLQWDP--NGNRLQDFQYLPFAVQC---L 465 (842)
Q Consensus 394 ~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~al~~s~--dg~-l~Sgs~DgtIrlWD~--~g~~l~~l~~H~~~V~s---l 465 (842)
.+ ...+..++++| ||+ +++++.|+.++||+. +++.++.+..|...|.+ +
T Consensus 307 --------------------~~---~~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~~~~~~~l~~~~~~v~~~~~~ 363 (706)
T 2z3z_A 307 --------------------HY---VEPLHPLTFLPGSNNQFIWQSRRDGWNHLYLYDTTGRLIRQVTKGEWEVTNFAGF 363 (706)
T ss_dssp --------------------SC---CCCCSCCEECTTCSSEEEEEECTTSSCEEEEEETTSCEEEECCCSSSCEEEEEEE
T ss_pred --------------------Ce---ECccCCceeecCCCCEEEEEEccCCccEEEEEECCCCEEEecCCCCeEEEeeeEE
Confidence 00 00112356888 887 677888999999976 57888888888877765 3
Q ss_pred EecCCEEEEEec-Cc----EEEEEeCCCcccccccccccCEEEEE--eCCCEEEEEcCC----CCeeeccccCC
Q 003171 466 CTFGSQIWVGYM-NG----IVQVLDLEGNLLGGWVAHSSPVIKMA--VGAGYIFTLANH----GGIRGWNVTSP 528 (842)
Q Consensus 466 s~dG~~LasGs~-Dg----tIrlWD~~g~~i~~l~gH~~~V~sla--~dg~~l~S~S~D----gtIrvWd~~~~ 528 (842)
+++|++|+.++. ++ .|..||+++.....+. |...+.+++ +||++++..+.+ +.|.+||+...
T Consensus 364 spdg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~l~-~~~~~~~~~~spdg~~l~~~~~~~~~p~~i~l~d~~~~ 436 (706)
T 2z3z_A 364 DPKGTRLYFESTEASPLERHFYCIDIKGGKTKDLT-PESGMHRTQLSPDGSAIIDIFQSPTVPRKVTVTNIGKG 436 (706)
T ss_dssp CTTSSEEEEEESSSCTTCBEEEEEETTCCCCEESC-CSSSEEEEEECTTSSEEEEEEECSSCSCEEEEEESSSC
T ss_pred cCCCCEEEEEecCCCCceEEEEEEEcCCCCceecc-CCCceEEEEECCCCCEEEEEecCCCCCcEEEEEECCCC
Confidence 568887776554 43 6777787644344443 677788876 578887755433 45999997653
|
| >1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B* | Back alignment and structure |
|---|
Probab=99.65 E-value=1.6e-14 Score=155.38 Aligned_cols=280 Identities=9% Similarity=0.038 Sum_probs=158.6
Q ss_pred ecCCCEEEEeCCCCccccccccccccCCCCCCCCCCeeeeeecCC-CeEEEEEcCCCCEE-EEEeCCCcEEEEECCCCcc
Q 003171 148 GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVS-SVMCMVGDEASGVV-WSGHRDGRIMCWKMNARLL 225 (842)
Q Consensus 148 ~~D~~vrvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-~V~~la~dpdg~~L-aSGs~DGtIrlWdl~~g~~ 225 (842)
+.++.|++||+.+...... + ...+.. .+.+++++|+|+.| ++++.++.|.+||+.++
T Consensus 8 ~~~~~v~~~d~~~~~~~~~-----------------~--~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~-- 66 (337)
T 1pby_B 8 ARPDKLVVIDTEKMAVDKV-----------------I--TIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTG-- 66 (337)
T ss_dssp ETTTEEEEEETTTTEEEEE-----------------E--ECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTC--
T ss_pred CCCCeEEEEECCCCcEEEE-----------------E--EcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCC--
Confidence 5689999999976433211 0 011011 47789999999766 55667889999999886
Q ss_pred CCCCCcceeEEec-cc----CCcEEEEEEecCCC-EEEee------------CCCcEEEEeCCCccceeecCCCceeeeE
Q 003171 226 DSDDGFGEVLSWQ-AH----RGPVLSLCISSYGD-LWSGS------------EGGGIKIWPWEAIEKALSLKPEERHTAA 287 (842)
Q Consensus 226 ~~~~~~~~~~~l~-gH----~~~V~slafs~dG~-L~SgS------------~DgtIrvWd~~t~~~~l~~~~~~~~~~~ 287 (842)
+....+. ++ ...+.+++|+|+|+ |++++ .++.|++||+.+++....+..
T Consensus 67 ------~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~------- 133 (337)
T 1pby_B 67 ------ETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA------- 133 (337)
T ss_dssp ------CEEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC-------
T ss_pred ------CeEeeEEcCCcccccccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeC-------
Confidence 4444443 22 23577899999997 66665 579999999976432111100
Q ss_pred EEEeeceeecccceeccceeeeecCCEEEEEEcCCCCEEEEeCCCcEEEEEccCCcEEEEeecCCceEeeeecccCCCcc
Q 003171 288 LIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGFLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFA 367 (842)
Q Consensus 288 l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~~ 367 (842)
...+..++.++++..++.+ ++.|.+||+.+++++..+..+... ....+++.....
T Consensus 134 -----------------------~~~~~~~~~s~dg~~l~~~-~~~i~~~d~~~~~~~~~~~~~~~~-~~~~~s~dg~~l 188 (337)
T 1pby_B 134 -----------------------PRQITMLAWARDGSKLYGL-GRDLHVMDPEAGTLVEDKPIQSWE-AETYAQPDVLAV 188 (337)
T ss_dssp -----------------------CSSCCCEEECTTSSCEEEE-SSSEEEEETTTTEEEEEECSTTTT-TTTBCCCBCCCC
T ss_pred -----------------------CCCcceeEECCCCCEEEEe-CCeEEEEECCCCcEeeeeeccccC-CCceeCCCccEE
Confidence 1123345667777767766 578999999999988776543210 011222211111
Q ss_pred cccceEEEEEecCCCCcccee---eeEeecCcceEEecCCcEEEEee-cCc-----cccCCCceEEEEECCCCc-EEEEe
Q 003171 368 MEDEFKTKIVTSSKKDKAQSS---FGFFQRSRNAIMGAADAVRRVAA-KGG-----FGDDNRRTEALTTSIDGM-IWTGG 437 (842)
Q Consensus 368 ~~~~~~~~~~s~~~~~~~~~s---~~~~~~~~~~~~g~~~~v~~v~~-~g~-----~~~~~~~v~al~~s~dg~-l~Sgs 437 (842)
+ +... ....... ......+..........+..+.. .+. +..+...+..++++|||+ ++++
T Consensus 189 ~--------~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~- 258 (337)
T 1pby_B 189 W--------NQHE-SSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGA- 258 (337)
T ss_dssp C--------CCCT-TTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTSSEEEEE-
T ss_pred e--------eecc-CCCceeeeeeccccccccccccccccceEEEeCCCCCceEeecCCCCCceeeEEECCCCCEEEEe-
Confidence 0 0000 0000000 00000000000000001111111 010 112334566789999997 5555
Q ss_pred CCCeEEEEcC-CCCeeeeeecCCccEEEE--EecCCEEEEEecCcEEEEEeCC-Ccccccccccc
Q 003171 438 ANGLLLQWDP-NGNRLQDFQYLPFAVQCL--CTFGSQIWVGYMNGIVQVLDLE-GNLLGGWVAHS 498 (842)
Q Consensus 438 ~DgtIrlWD~-~g~~l~~l~~H~~~V~sl--s~dG~~LasGs~DgtIrlWD~~-g~~i~~l~gH~ 498 (842)
++.|.+||+ +++.+..+..+ ..+.++ +++|++|++++.++.|++||++ ++.+..+..+.
T Consensus 259 -~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~i~v~d~~~~~~~~~~~~~~ 321 (337)
T 1pby_B 259 -YNVLESFDLEKNASIKRVPLP-HSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEKKGQVDLPG 321 (337)
T ss_dssp -ESEEEEEETTTTEEEEEEECS-SCCCEEEECTTSCEEEEESBSSEEEEEETTTCCEEEEEECGG
T ss_pred -CCeEEEEECCCCcCcceecCC-CceeeEEECCCCCEEEEEcCCCcEEEEECcCCcEEEEEEcCC
Confidence 788999999 67777776543 334555 4578899988889999999986 66666665443
|
| >1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A* | Back alignment and structure |
|---|
Probab=99.63 E-value=3.4e-14 Score=179.09 Aligned_cols=300 Identities=12% Similarity=-0.015 Sum_probs=186.1
Q ss_pred EEEEEcCCCCEEEEEeCC----C--cEEEEECCCCccCC--CCC------------------------------------
Q 003171 195 MCMVGDEASGVVWSGHRD----G--RIMCWKMNARLLDS--DDG------------------------------------ 230 (842)
Q Consensus 195 ~~la~dpdg~~LaSGs~D----G--tIrlWdl~~g~~~~--~~~------------------------------------ 230 (842)
.+++|+|||+++++++.| + .|.+|++.++.... ...
T Consensus 110 ~~~~~SpDg~ll~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~spG~l~~~~~~~~~~~~~~~~g~~~~~lw~ 189 (1045)
T 1k32_A 110 DVAGFDPDGNLIISTDAMQPFSSMTCLYRVENDGINFVPLNLGPATHILFADGRRVIGRNTFELPHWKGYRGGTRGKIWI 189 (1045)
T ss_dssp EEEEECTTCCEEEEECTTSSSTTCCEEEEEEGGGTEEEECCSCSCSEEEEETTEEEEEESCSCCTTSTTCCSTTCCEEEE
T ss_pred ccccCCCCCEEEEEECCcCCCcccceEEEEECCCCCeEEecCCCcceeeeCCCEEEEeccCCCccccccccCCCcCCEEE
Confidence 899999999999999866 3 57777776542100 000
Q ss_pred ---cceeEEecccCCcEEEEEEecCCCEEEeeCCCcEEEEeCCCcc-ceeecCCCceeeeEEEEeeceeecccceeccce
Q 003171 231 ---FGEVLSWQAHRGPVLSLCISSYGDLWSGSEGGGIKIWPWEAIE-KALSLKPEERHTAALIVERSYIDLRSHLSVNGF 306 (842)
Q Consensus 231 ---~~~~~~l~gH~~~V~slafs~dG~L~SgS~DgtIrvWd~~t~~-~~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~ 306 (842)
-.....+.+|.+.|.+++|+++.-+++++.|++++||.++... ....+.. +
T Consensus 190 ~~~~~~~~~l~~~~~~v~~~~~s~d~l~~~~~~dg~~~l~~~~~~g~~~~~l~~-------------------~------ 244 (1045)
T 1k32_A 190 EVNSGAFKKIVDMSTHVSSPVIVGHRIYFITDIDGFGQIYSTDLDGKDLRKHTS-------------------F------ 244 (1045)
T ss_dssp EEETTEEEEEECCSSCCEEEEEETTEEEEEECTTSSCEEEEEETTSCSCEECCC-------------------C------
T ss_pred ECCCCCeEECcCCCCcccceEEeCCEEEEEEeccCceEEEEEeCCCCcceEecC-------------------C------
Confidence 0112344678888999999987224577888999999864311 1111110 0
Q ss_pred eeeecCCEEEEEEcCCCCEEEEeCCCcEEEEEccCCcEEEEeecCC-----------ceEeeeecc-cCCCccc-ccceE
Q 003171 307 SSILTSDIKNLLSDHSRAKVWSAGFLSFALWDARTRELLKVFNIDG-----------QIENRVDMS-LLPDFAM-EDEFK 373 (842)
Q Consensus 307 ~~~~s~~v~~las~~~~~~v~s~s~~tI~lWD~~tg~~l~~l~~~~-----------~~~~~~~~s-~~~~~~~-~~~~~ 373 (842)
..+...++++++..|+.+.+..|.+||+.++.+. .+..+. .....+.++ +.....+ .....
T Consensus 245 -----~~~~~~~~SpDG~~la~~~~~~i~~~d~~~~~l~-~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~~~~ 318 (1045)
T 1k32_A 245 -----TDYYPRHLNTDGRRILFSKGGSIYIFNPDTEKIE-KIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVSRGQ 318 (1045)
T ss_dssp -----CSSCEEEEEESSSCEEEEETTEEEEECTTTCCEE-ECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEETTE
T ss_pred -----CCcceeeEcCCCCEEEEEeCCEEEEecCCceEee-eeccCcccccccccccccccceeeecCCCCCEEEEEEcCE
Confidence 1122335556777777777889999999665543 554321 011233444 4322111 00111
Q ss_pred EEEEecCCC--------Cc-cceeeeEeecCcceEEecCCc-EE-EEeec-C---ccccCCCceEEEEECCCCc-EEEEe
Q 003171 374 TKIVTSSKK--------DK-AQSSFGFFQRSRNAIMGAADA-VR-RVAAK-G---GFGDDNRRTEALTTSIDGM-IWTGG 437 (842)
Q Consensus 374 ~~~~s~~~~--------~~-~~~s~~~~~~~~~~~~g~~~~-v~-~v~~~-g---~~~~~~~~v~al~~s~dg~-l~Sgs 437 (842)
++++..... .. ....+.|. ++...+....+. ++ .+... + .+..+...+..+++||||+ |++++
T Consensus 319 i~~~~~~~~~~~~~~~~~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~~~~~~~l~~~~~~~~~~~~SpDG~~la~~~ 397 (1045)
T 1k32_A 319 AFIQDVSGTYVLKVPEPLRIRYVRRGGD-TKVAFIHGTREGDFLGIYDYRTGKAEKFEENLGNVFAMGVDRNGKFAVVAN 397 (1045)
T ss_dssp EEEECTTSSBEEECSCCSCEEEEEECSS-SEEEEEEEETTEEEEEEEETTTCCEEECCCCCCSEEEEEECTTSSEEEEEE
T ss_pred EEEEcCCCCceEEccCCCcceEEeeeEc-CCCeEEEEECCCceEEEEECCCCCceEecCCccceeeeEECCCCCEEEEEC
Confidence 222221100 00 11233444 443333333332 33 22221 1 2334557788999999998 78899
Q ss_pred CCCeEEEEcC-CCCeeeeeecCCccEEEE--EecCCEEEEEecCc----------EEEEEeCCCcccccccccccCEEEE
Q 003171 438 ANGLLLQWDP-NGNRLQDFQYLPFAVQCL--CTFGSQIWVGYMNG----------IVQVLDLEGNLLGGWVAHSSPVIKM 504 (842)
Q Consensus 438 ~DgtIrlWD~-~g~~l~~l~~H~~~V~sl--s~dG~~LasGs~Dg----------tIrlWD~~g~~i~~l~gH~~~V~sl 504 (842)
.+++|++||+ +|++...+.+|...|.++ ++||++|++++.++ +|++||+++..+..+..|...+.++
T Consensus 398 ~~~~v~~~d~~tg~~~~~~~~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~~~~l~~~~~~~~~~ 477 (1045)
T 1k32_A 398 DRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAATTENSHDYAP 477 (1045)
T ss_dssp TTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEEEECSCSSSBEEEE
T ss_pred CCCeEEEEECCCCceEEeccCCCCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCCCcEEEeeCCCcccCCc
Confidence 9999999999 677777777888887766 56899998887654 9999999854477888898888887
Q ss_pred E--eCCCEEEEEcCCCCeeecccc
Q 003171 505 A--VGAGYIFTLANHGGIRGWNVT 526 (842)
Q Consensus 505 a--~dg~~l~S~S~DgtIrvWd~~ 526 (842)
+ +||++|++++.++..++|+..
T Consensus 478 ~~spdG~~l~~~s~~~~~~~~~~~ 501 (1045)
T 1k32_A 478 AFDADSKNLYYLSYRSLDPSPDRV 501 (1045)
T ss_dssp EECTTSCEEEEEESCCCCCEECSS
T ss_pred eEcCCCCEEEEEecccCCcCcchh
Confidence 6 489999999999999988753
|
| >3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A* | Back alignment and structure |
|---|
Probab=99.62 E-value=7.2e-14 Score=151.66 Aligned_cols=242 Identities=15% Similarity=0.163 Sum_probs=163.3
Q ss_pred CCCeEEEEEcCCCCEEEEEeC-------CCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCCC-EE-EeeCC
Q 003171 191 VSSVMCMVGDEASGVVWSGHR-------DGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LW-SGSEG 261 (842)
Q Consensus 191 ~~~V~~la~dpdg~~LaSGs~-------DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~-SgS~D 261 (842)
...+..++++|+|+.|++++. +++|.+||..++ +....+.. ...+.+++|+|+|+ ++ +++.+
T Consensus 40 ~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~--------~~~~~~~~-~~~~~~~~~s~dg~~l~v~~~~~ 110 (353)
T 3vgz_A 40 GKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTL--------EVTQAIHN-DLKPFGATINNTTQTLWFGNTVN 110 (353)
T ss_dssp ESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTC--------CEEEEEEE-SSCCCSEEEETTTTEEEEEETTT
T ss_pred ccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCC--------eEEEEEec-CCCcceEEECCCCCEEEEEecCC
Confidence 346789999999999999885 468999999886 44555443 34477899999998 54 66678
Q ss_pred CcEEEEeCCCccceeecCCCceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcCCCCEEEEeC---CCcEEEEE
Q 003171 262 GGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG---FLSFALWD 338 (842)
Q Consensus 262 gtIrvWd~~t~~~~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s---~~tI~lWD 338 (842)
++|.+||..+++....+..... . .... ........+++++++..++.+. +..|.+||
T Consensus 111 ~~v~~~d~~~~~~~~~~~~~~~----------------~-~~~~---~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d 170 (353)
T 3vgz_A 111 SAVTAIDAKTGEVKGRLVLDDR----------------K-RTEE---VRPLQPRELVADDATNTVYISGIGKESVIWVVD 170 (353)
T ss_dssp TEEEEEETTTCCEEEEEESCCC----------------C-CCSS---CCCCEEEEEEEETTTTEEEEEEESSSCEEEEEE
T ss_pred CEEEEEeCCCCeeEEEEecCCC----------------c-cccc---cCCCCCceEEECCCCCEEEEEecCCCceEEEEc
Confidence 9999999977543221111000 0 0000 0001145677788888777665 45799999
Q ss_pred ccCCcEEEEeecCCceEeeeecccCCCcccccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEeecCccccC
Q 003171 339 ARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDD 418 (842)
Q Consensus 339 ~~tg~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~ 418 (842)
+.+++.+..+...+.
T Consensus 171 ~~~~~~~~~~~~~~~----------------------------------------------------------------- 185 (353)
T 3vgz_A 171 GGNIKLKTAIQNTGK----------------------------------------------------------------- 185 (353)
T ss_dssp TTTTEEEEEECCCCT-----------------------------------------------------------------
T ss_pred CCCCceEEEecCCCC-----------------------------------------------------------------
Confidence 999887655431110
Q ss_pred CCceEEEEECCCCc-EEEEeCCCeEEEEcC-CCCeeeeeec----CCccEEEE--EecCCEEEEEec-CcEEEEEeCC-C
Q 003171 419 NRRTEALTTSIDGM-IWTGGANGLLLQWDP-NGNRLQDFQY----LPFAVQCL--CTFGSQIWVGYM-NGIVQVLDLE-G 488 (842)
Q Consensus 419 ~~~v~al~~s~dg~-l~Sgs~DgtIrlWD~-~g~~l~~l~~----H~~~V~sl--s~dG~~LasGs~-DgtIrlWD~~-g 488 (842)
.+..++++|||. +++++.++.|.+||+ +++.+..+.. +...+.++ +++|++|++++. ++.|.+||++ +
T Consensus 186 --~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~ 263 (353)
T 3vgz_A 186 --MSTGLALDSEGKRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNG 263 (353)
T ss_dssp --TCCCCEEETTTTEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTC
T ss_pred --ccceEEECCCCCEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCC
Confidence 012345778876 788888999999999 6777777654 44456555 567998887775 5999999996 6
Q ss_pred cccccccccccCEEEEEeCCCEEE-EEcCCCCeeeccccCC
Q 003171 489 NLLGGWVAHSSPVIKMAVGAGYIF-TLANHGGIRGWNVTSP 528 (842)
Q Consensus 489 ~~i~~l~gH~~~V~sla~dg~~l~-S~S~DgtIrvWd~~~~ 528 (842)
+.+..+..+...-..+.+++++++ +...+++|.+||..+.
T Consensus 264 ~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~ 304 (353)
T 3vgz_A 264 NILAKVAAPESLAVLFNPARNEAYVTHRQAGKVSVIDAKSY 304 (353)
T ss_dssp CEEEEEECSSCCCEEEETTTTEEEEEETTTTEEEEEETTTT
T ss_pred cEEEEEEcCCCceEEECCCCCEEEEEECCCCeEEEEECCCC
Confidence 766666554433344557888655 5557999999997653
|
| >2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia} | Back alignment and structure |
|---|
Probab=99.61 E-value=3e-14 Score=172.00 Aligned_cols=276 Identities=9% Similarity=0.025 Sum_probs=160.4
Q ss_pred CeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcc--eeEEecccCCcEEEEEEecCCC-EEEeeCCCcEEEEeC
Q 003171 193 SVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFG--EVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPW 269 (842)
Q Consensus 193 ~V~~la~dpdg~~LaSGs~DGtIrlWdl~~g~~~~~~~~~--~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~ 269 (842)
.|.+++|+|||++|++++. ++|++||+.++ . ....+..|...|.+++|||||+ |++++ ++.|++||+
T Consensus 110 ~v~~~~~SpDg~~l~~~~~-~~i~~~d~~~~--------~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~-~~~i~~~d~ 179 (741)
T 2ecf_A 110 GIVDYQWSPDAQRLLFPLG-GELYLYDLKQE--------GKAAVRQLTHGEGFATDAKLSPKGGFVSFIR-GRNLWVIDL 179 (741)
T ss_dssp ESCCCEECTTSSEEEEEET-TEEEEEESSSC--------STTSCCBCCCSSSCEEEEEECTTSSEEEEEE-TTEEEEEET
T ss_pred CcceeEECCCCCEEEEEeC-CcEEEEECCCC--------CcceEEEcccCCcccccccCCCCCCEEEEEe-CCcEEEEec
Confidence 4788999999999999987 99999999885 1 4556778889999999999998 66766 569999999
Q ss_pred CCccceeecCCCceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcCCCCEEEEeC-CC----------------
Q 003171 270 EAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FL---------------- 332 (842)
Q Consensus 270 ~t~~~~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s-~~---------------- 332 (842)
.+++.. .+........ . .+. ...+..-....+..++.++++..|+.++ +.
T Consensus 180 ~~g~~~-~~~~~~~~~~-~---------~g~--~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~ 246 (741)
T 2ecf_A 180 ASGRQM-QLTADGSTTI-G---------NGI--AEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRT 246 (741)
T ss_dssp TTTEEE-ECCCCCCSSE-E---------ESC--CCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCE
T ss_pred CCCCEE-EeccCCccce-e---------ccc--cceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcc
Confidence 775322 1111100000 0 000 0000000000122344555555554442 11
Q ss_pred -----------------cEEEEEccC-CcEEEEeec--CCceEeeeecccCCCcccccceEEEEEecCCCCccceeeeEe
Q 003171 333 -----------------SFALWDART-RELLKVFNI--DGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFF 392 (842)
Q Consensus 333 -----------------tI~lWD~~t-g~~l~~l~~--~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~ 392 (842)
.|.+||+.+ +++...... +......+.+
T Consensus 247 ~~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------------- 294 (741)
T 2ecf_A 247 DVIEQRYPAAGDANVQVKLGVISPAEQAQTQWIDLGKEQDIYLARVNW-------------------------------- 294 (741)
T ss_dssp EEEEEECCBTTSCCCEEEEEEECSSTTCCCEEECCCSCSSEEEEEEEE--------------------------------
T ss_pred cceEeecCCCCCCCCeeEEEEEECCCCCceEEecCCCCcceEEEEEEe--------------------------------
Confidence 677888888 776444322 1112222222
Q ss_pred ecCcceEEecC-----Cc-EEEEee-cCc----cccCC-C---ceEEEEECCCCc-EEEEeCCCeEEEEcC--CCCeeee
Q 003171 393 QRSRNAIMGAA-----DA-VRRVAA-KGG----FGDDN-R---RTEALTTSIDGM-IWTGGANGLLLQWDP--NGNRLQD 454 (842)
Q Consensus 393 ~~~~~~~~g~~-----~~-v~~v~~-~g~----~~~~~-~---~v~al~~s~dg~-l~Sgs~DgtIrlWD~--~g~~l~~ 454 (842)
+++..++.... +. ++.+.. .+. +..+. . .+..++|+|||+ +++++.||+++||.. +++ +..
T Consensus 295 pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~~~~~~-~~~ 373 (741)
T 2ecf_A 295 RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSPTWVPLHNSLRFLDDGSILWSSERTGFQHLYRIDSKGK-AAA 373 (741)
T ss_dssp EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECSSCCCCCSCCEECTTSCEEEEECTTSSCEEEEECSSSC-EEE
T ss_pred CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCCCcCCcCCceEECCCCeEEEEecCCCccEEEEEcCCCC-eee
Confidence 22222111110 01 111111 111 01111 1 234688999998 577788887777755 567 888
Q ss_pred eecCCccEEE---EEecCCEEEE-EecCc--EEEEEeCC--CcccccccccccCEEEEE--eCCCEEEEEcCC----CCe
Q 003171 455 FQYLPFAVQC---LCTFGSQIWV-GYMNG--IVQVLDLE--GNLLGGWVAHSSPVIKMA--VGAGYIFTLANH----GGI 520 (842)
Q Consensus 455 l~~H~~~V~s---ls~dG~~Las-Gs~Dg--tIrlWD~~--g~~i~~l~gH~~~V~sla--~dg~~l~S~S~D----gtI 520 (842)
+..|...|.+ ++++|++|+. ++.++ +++||++. |+....+.. ...+.+++ +|+++++....+ ..+
T Consensus 374 l~~~~~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~~g~~~~~l~~-~~~~~~~~~spdg~~l~~~~~~~~~p~~~ 452 (741)
T 2ecf_A 374 LTHGNWSVDELLAVDEKAGLAYFRAGIESARESQIYAVPLQGGQPQRLSK-APGMHSASFARNASVYVDSWSNNSTPPQI 452 (741)
T ss_dssp SCCSSSCEEEEEEEETTTTEEEEEECSSCTTCBEEEEEETTCCCCEECCC-SCSEEEEEECTTSSEEEEEEEETTEEEEE
T ss_pred eeecceEEEeEeEEeCCCCEEEEEEeCCCCceEEEEEEEcCCCCeeeccc-CCCceEEEECCCCCEEEEEecCCCCCCeE
Confidence 8888887875 4568987765 44455 89999864 666666665 56677776 578877744332 356
Q ss_pred eeccc
Q 003171 521 RGWNV 525 (842)
Q Consensus 521 rvWd~ 525 (842)
.+|+.
T Consensus 453 ~l~~~ 457 (741)
T 2ecf_A 453 ELFRA 457 (741)
T ss_dssp EEEET
T ss_pred EEEEc
Confidence 77764
|
| >2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A* | Back alignment and structure |
|---|
Probab=99.60 E-value=7.2e-14 Score=167.86 Aligned_cols=272 Identities=11% Similarity=-0.005 Sum_probs=150.6
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCCC-EEEeeCCCcEEEEeCC
Q 003171 192 SSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWE 270 (842)
Q Consensus 192 ~~V~~la~dpdg~~LaSGs~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~~ 270 (842)
.+|.+++|+|| +.++.+ .|++|++||+.++ ....+..|.+.|.+++|||||+ |++ +.|+.|++|++.
T Consensus 82 ~~v~~~~~spd-~~~~~~-~~~~i~~~d~~~~---------~~~~l~~~~~~~~~~~~SpdG~~la~-~~~~~i~v~~~~ 149 (706)
T 2z3z_A 82 FPSFRTLDAGR-GLVVLF-TQGGLVGFDMLAR---------KVTYLFDTNEETASLDFSPVGDRVAY-VRNHNLYIARGG 149 (706)
T ss_dssp CCCEEEEETTT-TEEEEE-ETTEEEEEETTTT---------EEEEEECCTTCCTTCEECTTSSEEEE-EETTEEEEEECB
T ss_pred cCceeEEECCC-CeEEEE-ECCEEEEEECCCC---------ceEEccCCcccccCCcCCCCCCEEEE-EECCeEEEEecC
Confidence 57999999999 555554 4699999999885 3455667778899999999998 556 478999999997
Q ss_pred C-----ccceeecCCCceeeeEEEEeeceeecccceecccee--eeecCCEEEEEEcCCCCEEEEeC-C-CcEEEEEccC
Q 003171 271 A-----IEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFS--SILTSDIKNLLSDHSRAKVWSAG-F-LSFALWDART 341 (842)
Q Consensus 271 t-----~~~~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~--~~~s~~v~~las~~~~~~v~s~s-~-~tI~lWD~~t 341 (842)
+ ++............. .+.. .-....+..+..++++..|+.++ + ..+..|.+..
T Consensus 150 ~~~~~~g~~~~~~~~~~~~~~-----------------~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~ 212 (706)
T 2z3z_A 150 KLGEGMSRAIAVTIDGTETLV-----------------YGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVD 212 (706)
T ss_dssp CTTSCCCCCEESCSCCBTTEE-----------------ESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEE
T ss_pred cccccCCCcEEeccCCCCCeE-----------------cccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeec
Confidence 6 432211110000000 0000 00001134566677777776654 1 1121111100
Q ss_pred CcEEEEeecCCceEeeeecccCCCcccccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEeecCccccCCCc
Q 003171 342 RELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRR 421 (842)
Q Consensus 342 g~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~ 421 (842)
.............+.... -....+++++.... .....+. ....+...
T Consensus 213 ------~~~~~~~~~~~~y~~~g~--~~~~~~l~~~d~~~----------------------~~~~~~~---~~~~~~~~ 259 (706)
T 2z3z_A 213 ------YHPLEAESKPLYYPMAGT--PSHHVTVGIYHLAT----------------------GKTVYLQ---TGEPKEKF 259 (706)
T ss_dssp ------CCSSSCEEEEECCCBTTS--CCCEEEEEEEETTT----------------------TEEEECC---CCSCTTCE
T ss_pred ------cCCCCCceEEeeCCCCCC--CCCeeEEEEEECCC----------------------CceEeec---cCCCCcee
Confidence 000000000000000000 00001111111110 0000000 00123456
Q ss_pred eEEEEECCCCc-EEEEeCCC-----eEEEEcC-CCCeeeeee--cCCccE---E--EEEe--cCCEEEEEecCcEEEEEe
Q 003171 422 TEALTTSIDGM-IWTGGANG-----LLLQWDP-NGNRLQDFQ--YLPFAV---Q--CLCT--FGSQIWVGYMNGIVQVLD 485 (842)
Q Consensus 422 v~al~~s~dg~-l~Sgs~Dg-----tIrlWD~-~g~~l~~l~--~H~~~V---~--sls~--dG~~LasGs~DgtIrlWD 485 (842)
+..++++|||+ |++++.|+ +|++||+ +|+.++.+. .+...+ . .+++ ||++|++++.|++++||+
T Consensus 260 ~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~ 339 (706)
T 2z3z_A 260 LTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTFLPGSNNQFIWQSRRDGWNHLYL 339 (706)
T ss_dssp EEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEECTTCSSEEEEEECTTSSCEEEE
T ss_pred EeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCceeecCCCCEEEEEEccCCccEEEE
Confidence 77899999998 77777675 8999999 564554443 233222 2 4567 899999999999999997
Q ss_pred C--CCcccccccccccCEEE-EE--eCCCEEEEEc-CCC--Ceeeccc
Q 003171 486 L--EGNLLGGWVAHSSPVIK-MA--VGAGYIFTLA-NHG--GIRGWNV 525 (842)
Q Consensus 486 ~--~g~~i~~l~gH~~~V~s-la--~dg~~l~S~S-~Dg--tIrvWd~ 525 (842)
. +++.+..+..|...|.+ ++ +|++.++.++ .++ .+++|.+
T Consensus 340 ~~~~~~~~~~l~~~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~ 387 (706)
T 2z3z_A 340 YDTTGRLIRQVTKGEWEVTNFAGFDPKGTRLYFESTEASPLERHFYCI 387 (706)
T ss_dssp EETTSCEEEECCCSSSCEEEEEEECTTSSEEEEEESSSCTTCBEEEEE
T ss_pred EECCCCEEEecCCCCeEEEeeeEEcCCCCEEEEEecCCCCceEEEEEE
Confidence 5 47777888888888876 44 5787776544 444 2455543
|
| >3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum} | Back alignment and structure |
|---|
Probab=99.59 E-value=4.3e-13 Score=146.26 Aligned_cols=248 Identities=12% Similarity=0.117 Sum_probs=153.2
Q ss_pred CCCeEEEEEcCCCCEEEEEeC---CCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCCC-EEEee-CCCcEE
Q 003171 191 VSSVMCMVGDEASGVVWSGHR---DGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGS-EGGGIK 265 (842)
Q Consensus 191 ~~~V~~la~dpdg~~LaSGs~---DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS-~DgtIr 265 (842)
...+..++++|+|+ |++++. ++.|++|++.++. .+.+..+.+|...+..|+|+|||+ |++++ .+++|+
T Consensus 39 ~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~------~~~~~~~~~~~~~p~~~a~spdg~~l~~~~~~~~~v~ 111 (347)
T 3hfq_A 39 TQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQT------AHKLNTVVAPGTPPAYVAVDEARQLVYSANYHKGTAE 111 (347)
T ss_dssp CSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTE------EEEEEEEEEESCCCSEEEEETTTTEEEEEETTTTEEE
T ss_pred cCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCc------EEEeeeeecCCCCCEEEEECCCCCEEEEEeCCCCEEE
Confidence 44567799999999 565554 6899999997752 123444566788899999999998 77766 789999
Q ss_pred EEeCCCccceeecCCCceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcCCCCEEEEeC-CCcEEEEEcc-CCc
Q 003171 266 IWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDAR-TRE 343 (842)
Q Consensus 266 vWd~~t~~~~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s-~~tI~lWD~~-tg~ 343 (842)
+|++..... +. ....+ ...+.... .......+..++.++++..+++.. ++.|.+||+. +|+
T Consensus 112 v~~~~~~g~-~~------~~~~~-------~~~~~~p~---~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g~ 174 (347)
T 3hfq_A 112 VMKIAADGA-LT------LTDTV-------QHSGHGPR---PEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAGQ 174 (347)
T ss_dssp EEEECTTSC-EE------EEEEE-------ECCCCCSS---TTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTTSC
T ss_pred EEEeCCCCC-ee------eccee-------ecCCCCCC---ccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCCCc
Confidence 999853111 00 00000 00000000 000012466788888877433333 4579999987 454
Q ss_pred EEEEeecCCceEeeeecccCCCcccccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEeecCccccCCCceE
Q 003171 344 LLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTE 423 (842)
Q Consensus 344 ~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~ 423 (842)
+..... ... .....+.
T Consensus 175 ~~~~~~---------------------------~~~-------------------------------------~~g~~p~ 190 (347)
T 3hfq_A 175 LSEQSV---------------------------LTM-------------------------------------EAGFGPR 190 (347)
T ss_dssp EEEEEE---------------------------EEC-------------------------------------CTTCCEE
T ss_pred EEEeee---------------------------EEc-------------------------------------CCCCCCc
Confidence 321100 000 0011234
Q ss_pred EEEECCCCc-EEE-EeCCCeEEEEcCC---CCe--eeeeecCC------ccEEEE--EecCCEEEEE-ecCcEEEEEeCC
Q 003171 424 ALTTSIDGM-IWT-GGANGLLLQWDPN---GNR--LQDFQYLP------FAVQCL--CTFGSQIWVG-YMNGIVQVLDLE 487 (842)
Q Consensus 424 al~~s~dg~-l~S-gs~DgtIrlWD~~---g~~--l~~l~~H~------~~V~sl--s~dG~~LasG-s~DgtIrlWD~~ 487 (842)
.++++|||+ +++ +..++.|++|+++ |+. +..+.... ..+..+ ++||++|+++ ..+++|.+||+.
T Consensus 191 ~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~ 270 (347)
T 3hfq_A 191 HLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVT 270 (347)
T ss_dssp EEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEEC
T ss_pred eEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEEC
Confidence 578999998 655 4567899999983 432 33333222 335555 4689988654 458999999986
Q ss_pred --C--cccccccccccCEEEEE--eCCCEEEEEcC-CCCeeecccc
Q 003171 488 --G--NLLGGWVAHSSPVIKMA--VGAGYIFTLAN-HGGIRGWNVT 526 (842)
Q Consensus 488 --g--~~i~~l~gH~~~V~sla--~dg~~l~S~S~-DgtIrvWd~~ 526 (842)
| +.+..+..|...+.+++ +||++|+.++. +++|++|++.
T Consensus 271 ~~g~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~d 316 (347)
T 3hfq_A 271 ADGHLTLIQQISTEGDFPRDFDLDPTEAFVVVVNQNTDNATLYARD 316 (347)
T ss_dssp GGGCEEEEEEEECSSSCCCEEEECTTSSEEEEEETTTTEEEEEEEC
T ss_pred CCCcEEEeEEEecCCCCcCeEEECCCCCEEEEEEcCCCcEEEEEEe
Confidence 3 34556666666677776 57888887765 5899999653
|
| >2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A | Back alignment and structure |
|---|
Probab=99.58 E-value=1e-14 Score=166.18 Aligned_cols=111 Identities=14% Similarity=-0.018 Sum_probs=84.1
Q ss_pred CCCceEEEEECCC-Cc-EEEEeCCCeEEEEcC-CCCeeeeeecCCccEEEEEe--cCCEEEEEecCcEEEEEeCCCcccc
Q 003171 418 DNRRTEALTTSID-GM-IWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQCLCT--FGSQIWVGYMNGIVQVLDLEGNLLG 492 (842)
Q Consensus 418 ~~~~v~al~~s~d-g~-l~Sgs~DgtIrlWD~-~g~~l~~l~~H~~~V~sls~--dG~~LasGs~DgtIrlWD~~g~~i~ 492 (842)
|...|.+++++|+ +. +++|+.||+|++||+ ++.++....+|...|++++. +|++|++|+.||+|++||++++...
T Consensus 148 h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~~~~~~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~~~~~~ 227 (434)
T 2oit_A 148 AGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVKVCATLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPTLQEKK 227 (434)
T ss_dssp GGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEEEEEEECGGGCEEEEEECTTSSCEEEEETTSCEEEECTTCCEEE
T ss_pred CCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCcceeeccCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccCCcccc
Confidence 4456778889887 55 889999999999999 67676677789999999864 7999999999999999999866555
Q ss_pred ccccc-------ccCEEEEEeCC--CEEE-EEcCCCC------eeeccccCC
Q 003171 493 GWVAH-------SSPVIKMAVGA--GYIF-TLANHGG------IRGWNVTSP 528 (842)
Q Consensus 493 ~l~gH-------~~~V~sla~dg--~~l~-S~S~Dgt------IrvWd~~~~ 528 (842)
.+..| ...|.++.+++ .+++ ..+.||. +++|++...
T Consensus 228 ~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~~~~~~~v~i~~l~~~ 279 (434)
T 2oit_A 228 VIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAADGTLETSPDVVMALLPKK 279 (434)
T ss_dssp EECCCTTCCTTSCEEEEEEEEEETTEEEEEEEETTCCSSSCCEEEEEECCCT
T ss_pred cccCCcccCCCCceeEEEEEEecCceEEEEEccCCCccCCCCceEEEEeccC
Confidence 44443 34788888643 3443 3444543 889998653
|
| >1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B* | Back alignment and structure |
|---|
Probab=99.57 E-value=3.5e-14 Score=153.70 Aligned_cols=69 Identities=4% Similarity=-0.129 Sum_probs=54.6
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEecccC-CcEEEEEEecCCC-EE-EeeCCCcEEEEeCCCcc
Q 003171 197 MVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHR-GPVLSLCISSYGD-LW-SGSEGGGIKIWPWEAIE 273 (842)
Q Consensus 197 la~dpdg~~LaSGs~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~-~~V~slafs~dG~-L~-SgS~DgtIrvWd~~t~~ 273 (842)
+++++++.++++++.|++|++||+.++ +...++..+. ..+.+++|+|+|+ ++ +++.+++|.+||+.+++
T Consensus 5 ~~~~~~~~~~v~~~~~~~v~~~d~~~~--------~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~ 76 (349)
T 1jmx_B 5 PALKAGHEYMIVTNYPNNLHVVDVASD--------TVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCK 76 (349)
T ss_dssp CCCCTTCEEEEEEETTTEEEEEETTTT--------EEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTE
T ss_pred ccccCCCEEEEEeCCCCeEEEEECCCC--------cEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCc
Confidence 356678899999999999999999987 5555555443 2567899999997 54 66678999999997754
|
| >2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.57 E-value=1.9e-13 Score=143.09 Aligned_cols=213 Identities=10% Similarity=-0.061 Sum_probs=145.2
Q ss_pred EEeCCCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCCC-EEEeeCCCcEEEEeCCC-ccceeecCCCceee
Q 003171 208 SGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEA-IEKALSLKPEERHT 285 (842)
Q Consensus 208 SGs~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~~t-~~~~l~~~~~~~~~ 285 (842)
+++.|++|++||+.++ ....+..|.+.|.+++|+|+|+ |++++ ++.|++||+.+ ++.........
T Consensus 17 ~~~~~~~i~~~d~~~~---------~~~~~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~--- 83 (297)
T 2ojh_A 17 GGSMRSSIEIFNIRTR---------KMRVVWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEKVDTGFA--- 83 (297)
T ss_dssp -CCCCEEEEEEETTTT---------EEEEEEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEECCCTTC---
T ss_pred CCCcceeEEEEeCCCC---------ceeeeccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceEeccccc---
Confidence 4567899999999885 3456778999999999999998 56665 88999999977 54321111100
Q ss_pred eEEEEeeceeecccceeccceeeeecCCEEEEEEcCCCCEEEEeCC---CcEEEEEc--cCCcEEEEeecCCceEeeeec
Q 003171 286 AALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGF---LSFALWDA--RTRELLKVFNIDGQIENRVDM 360 (842)
Q Consensus 286 ~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s~---~tI~lWD~--~tg~~l~~l~~~~~~~~~~~~ 360 (842)
...+..++.++++..++++.. ...+||.+ .+++. ..+
T Consensus 84 -------------------------~~~~~~~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~~-~~~------------ 125 (297)
T 2ojh_A 84 -------------------------TICNNDHGISPDGALYAISDKVEFGKSAIYLLPSTGGTP-RLM------------ 125 (297)
T ss_dssp -------------------------CCBCSCCEECTTSSEEEEEECTTTSSCEEEEEETTCCCC-EEC------------
T ss_pred -------------------------cccccceEECCCCCEEEEEEeCCCCcceEEEEECCCCce-EEe------------
Confidence 012334556666766666542 24455543 22221 000
Q ss_pred ccCCCcccccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEeecCccccCCCceEEEEECCCCc-EE-EEeC
Q 003171 361 SLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGM-IW-TGGA 438 (842)
Q Consensus 361 s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~al~~s~dg~-l~-Sgs~ 438 (842)
.. ...+..++++|||+ |+ +++.
T Consensus 126 -------------------------------------------------------~~-~~~~~~~~~spdg~~l~~~~~~ 149 (297)
T 2ojh_A 126 -------------------------------------------------------TK-NLPSYWHGWSPDGKSFTYCGIR 149 (297)
T ss_dssp -------------------------------------------------------CS-SSSEEEEEECTTSSEEEEEEEE
T ss_pred -------------------------------------------------------ec-CCCccceEECCCCCEEEEEECC
Confidence 00 01245577899987 54 7778
Q ss_pred CCeEEEEcC--CCCeeeeeecCCccEEEEE--ecCCEEEEEe-cCcEEEEEeC--CCcccccccccccCEEEEE--eCCC
Q 003171 439 NGLLLQWDP--NGNRLQDFQYLPFAVQCLC--TFGSQIWVGY-MNGIVQVLDL--EGNLLGGWVAHSSPVIKMA--VGAG 509 (842)
Q Consensus 439 DgtIrlWD~--~g~~l~~l~~H~~~V~sls--~dG~~LasGs-~DgtIrlWD~--~g~~i~~l~gH~~~V~sla--~dg~ 509 (842)
|+.+++|++ .+.....+..|...+.+++ ++|++|+.++ .++.++||++ .+..+..+..|...+.+++ ++++
T Consensus 150 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~ 229 (297)
T 2ojh_A 150 DQVFDIYSMDIDSGVETRLTHGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERITDSAYGDWFPHPSPSGD 229 (297)
T ss_dssp TTEEEEEEEETTTCCEEECCCSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEEECCCCSEEEEEEEECTTSS
T ss_pred CCceEEEEEECCCCcceEcccCCCccccceECCCCCEEEEEecCCCCccEEEECCCCCCcEEEecCCcccCCeEECCCCC
Confidence 999999986 4556667777888888875 4788887766 5899999986 4667778888888888877 4888
Q ss_pred EEEEEcCC-----------CCeeeccccC
Q 003171 510 YIFTLANH-----------GGIRGWNVTS 527 (842)
Q Consensus 510 ~l~S~S~D-----------gtIrvWd~~~ 527 (842)
+++.++.+ +.|.+||+..
T Consensus 230 ~l~~~~~~~~~~~~~~~~~~~l~~~d~~~ 258 (297)
T 2ojh_A 230 KVVFVSYDADVFDHPRDLDVRVQLMDMDG 258 (297)
T ss_dssp EEEEEEEETTCCSCCSSEEEEEEEEETTS
T ss_pred EEEEEEcCCCCCcccccCceEEEEEecCC
Confidence 99888776 4588888654
|
| >1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B* | Back alignment and structure |
|---|
Probab=99.56 E-value=5.6e-13 Score=144.16 Aligned_cols=283 Identities=9% Similarity=0.050 Sum_probs=158.1
Q ss_pred CCEEEE--ecCCCEEEEeCCCCccccccccccccCCCCCCCCCCeeeeeecCCCeEEEEEcCCCCEEE-EEeCCCcEEEE
Q 003171 142 EEQLWA--GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVW-SGHRDGRIMCW 218 (842)
Q Consensus 142 ~~~l~~--~~D~~vrvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~V~~la~dpdg~~La-SGs~DGtIrlW 218 (842)
++.+|+ +.++.|++||+++...... + .+.+...+.+++++|+|+.++ ++..++.|.+|
T Consensus 10 ~~~~~v~~~~~~~v~~~d~~~~~~~~~-----------------~--~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~ 70 (349)
T 1jmx_B 10 GHEYMIVTNYPNNLHVVDVASDTVYKS-----------------C--VMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGI 70 (349)
T ss_dssp TCEEEEEEETTTEEEEEETTTTEEEEE-----------------E--ECSSCCSSCEEEECTTSSEEEEEETTTTEEEEE
T ss_pred CCEEEEEeCCCCeEEEEECCCCcEEEE-----------------E--ecCCCCCCceeEECCCCCEEEEEeCCCCcEEEE
Confidence 445555 4689999999976543211 0 011012467899999998665 55678999999
Q ss_pred ECCCCccCCCCCcceeEEec-cc-----CCcEEEEEEecCCC-EEEeeCC------------CcEEEEeCCCccceeecC
Q 003171 219 KMNARLLDSDDGFGEVLSWQ-AH-----RGPVLSLCISSYGD-LWSGSEG------------GGIKIWPWEAIEKALSLK 279 (842)
Q Consensus 219 dl~~g~~~~~~~~~~~~~l~-gH-----~~~V~slafs~dG~-L~SgS~D------------gtIrvWd~~t~~~~l~~~ 279 (842)
|+.++ +....+. +| ...+.+++|+|||+ |++++.+ ++|.+||+.+++.....
T Consensus 71 d~~t~--------~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~- 141 (349)
T 1jmx_B 71 DLDTC--------KNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPV- 141 (349)
T ss_dssp ETTTT--------EEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCS-
T ss_pred eCCCC--------cEEEEEEcccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCcccccee-
Confidence 99886 4444444 22 23378899999998 6777655 89999999764311000
Q ss_pred CCceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcCCCCEEEEeCCCcEEEEEccCCcEEEEeecCCceEeeee
Q 003171 280 PEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGFLSFALWDARTRELLKVFNIDGQIENRVD 359 (842)
Q Consensus 280 ~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s~~tI~lWD~~tg~~l~~l~~~~~~~~~~~ 359 (842)
..+ . ....+.++++++++. ++.++ ..|.+||+.+++++..+...... ....
T Consensus 142 ------~~~---------~-----------~~~~~~~~~~s~dg~-l~~~~-~~i~~~d~~~~~~~~~~~~~~~~-~~~~ 192 (349)
T 1jmx_B 142 ------RTF---------P-----------MPRQVYLMRAADDGS-LYVAG-PDIYKMDVKTGKYTVALPLRNWN-RKGY 192 (349)
T ss_dssp ------EEE---------E-----------CCSSCCCEEECTTSC-EEEES-SSEEEECTTTCCEEEEECSTTCC-CTTB
T ss_pred ------eec---------c-----------CCCcccceeECCCCc-EEEcc-CcEEEEeCCCCceeccccccccC-Cccc
Confidence 000 0 011244566677776 55554 34999999999988776532100 0000
Q ss_pred cccCCCcccccceEEEEEecCCCCcc---ceeeeEeecCc-----------ceEEecCC-cEEEEeecCccccCCCceEE
Q 003171 360 MSLLPDFAMEDEFKTKIVTSSKKDKA---QSSFGFFQRSR-----------NAIMGAAD-AVRRVAAKGGFGDDNRRTEA 424 (842)
Q Consensus 360 ~s~~~~~~~~~~~~~~~~s~~~~~~~---~~s~~~~~~~~-----------~~~~g~~~-~v~~v~~~g~~~~~~~~v~a 424 (842)
.++..... +........ ...+.+.+++. ........ .+..+. +......+..
T Consensus 193 ~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~ 259 (349)
T 1jmx_B 193 SAPDVLYF---------WPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQE----FADLTELYFT 259 (349)
T ss_dssp CCCBCCCC---------CCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEE----EEECSSCEEE
T ss_pred cCccceee---------ecCCCcceeEEeeeeeeecCCCcCCccccccceeEEEEeccCCcEEecc----cccCCCccee
Confidence 00000000 000000000 00011111000 00001111 111111 1113345678
Q ss_pred EEECC-CCc-EEEEeCCCeEEEEcC-CCCeeeeeecCCccEEEE--EecCCEEEEEecCcEEEEEeCC-Cccccccccc
Q 003171 425 LTTSI-DGM-IWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQCL--CTFGSQIWVGYMNGIVQVLDLE-GNLLGGWVAH 497 (842)
Q Consensus 425 l~~s~-dg~-l~Sgs~DgtIrlWD~-~g~~l~~l~~H~~~V~sl--s~dG~~LasGs~DgtIrlWD~~-g~~i~~l~gH 497 (842)
++++| ||. ++++ ++.|.+||+ +++.++.+..+ ..+.++ +++|++|++++.++.|++||++ ++.+..+..+
T Consensus 260 ~~~sp~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~v~v~d~~~~~~~~~~~~~ 335 (349)
T 1jmx_B 260 GLRSPKDPNQIYGV--LNRLAKYDLKQRKLIKAANLD-HTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKVKNIKLP 335 (349)
T ss_dssp EEECSSCTTEEEEE--ESEEEEEETTTTEEEEEEECS-SCCCEEEECSSSSCEEEESBSSEEEEEETTTTEEEEEEECS
T ss_pred eEecCCCCCEEEEE--cCeEEEEECccCeEEEEEcCC-CCccceEECCCCCEEEEecCCCeEEEEeccccceeeeeecC
Confidence 88999 987 5555 889999999 67777776543 234454 4578888888889999999987 5666555433
|
| >1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24 | Back alignment and structure |
|---|
Probab=99.56 E-value=2.5e-14 Score=172.12 Aligned_cols=279 Identities=10% Similarity=-0.005 Sum_probs=167.5
Q ss_pred CeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEecccCC---cEEEEEEecCCC-EEEeeCC-------
Q 003171 193 SVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRG---PVLSLCISSYGD-LWSGSEG------- 261 (842)
Q Consensus 193 ~V~~la~dpdg~~LaSGs~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~---~V~slafs~dG~-L~SgS~D------- 261 (842)
.+.+++|+|||+++++ +.||+|++||+.++ +....+.+|.. .|.+++|||||+ |++++.+
T Consensus 18 ~~~~~~~spdg~~~~~-~~dg~i~~~d~~~g--------~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~ 88 (723)
T 1xfd_A 18 HDPEAKWISDTEFIYR-EQKGTVRLWNVETN--------TSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHS 88 (723)
T ss_dssp CCCCCCBSSSSCBCCC-CSSSCEEEBCGGGC--------CCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSC
T ss_pred cccccEEcCCCcEEEE-eCCCCEEEEECCCC--------cEEEEeccccccccccceEEECCCCCEEEEEecCccceeec
Confidence 3567899999998877 78999999999987 45566677765 499999999998 7787764
Q ss_pred --CcEEEEeCCCccceeecCCCceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcCCCCEEEEeCCCcEEEEEc
Q 003171 262 --GGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGFLSFALWDA 339 (842)
Q Consensus 262 --gtIrvWd~~t~~~~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s~~tI~lWD~ 339 (842)
++|++||+++++. ..+..... + ...+..++.++++..|+.+++++|.+||+
T Consensus 89 ~~~~i~~~d~~~~~~-~~l~~~~~----------------~----------~~~~~~~~~SPdG~~la~~~~~~i~~~~~ 141 (723)
T 1xfd_A 89 YTGYYVLSKIPHGDP-QSLDPPEV----------------S----------NAKLQYAGWGPKGQQLIFIFENNIYYCAH 141 (723)
T ss_dssp CCSEEEEEESSSCCC-EECCCTTC----------------C----------SCCCSBCCBCSSTTCEEEEETTEEEEESS
T ss_pred ceeeEEEEECCCCce-EeccCCcc----------------c----------cccccccEECCCCCEEEEEECCeEEEEEC
Confidence 7888999987543 11111000 0 11234456677888888777789999999
Q ss_pred cCCcEEEEeecCCc-eEeeeecccCCCcccccceEEEEEecCCCCccceeeeEeecCcceEEecCC--cEEEEeecCccc
Q 003171 340 RTRELLKVFNIDGQ-IENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAAD--AVRRVAAKGGFG 416 (842)
Q Consensus 340 ~tg~~l~~l~~~~~-~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~--~v~~v~~~g~~~ 416 (842)
.+++..+....+.. +.. ....+...++++ ......+.++++++.++....+ .+..+.......
T Consensus 142 ~~g~~~~~~~~~~~~~~~----~g~~~~v~~ee~----------~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~ 207 (723)
T 1xfd_A 142 VGKQAIRVVSTGKEGVIY----NGLSDWLYEEEI----------LKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTG 207 (723)
T ss_dssp SSSCCEEEECCCBTTTEE----EEECCHHHHHTT----------SSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSS
T ss_pred CCCceEEEecCCCCCceE----CcccceeEEEEe----------ccCcceEEECCCCCEEEEEEECCCccceEEeeccCC
Confidence 99887655432111 000 000000000000 0001235566666555444322 111111100001
Q ss_pred cCCCceEEEEECCCCcEEEEeCCCeEEEEcC-CCCeeeeeecC------CccEEEE--EecCCEEEEEec----CcEEEE
Q 003171 417 DDNRRTEALTTSIDGMIWTGGANGLLLQWDP-NGNRLQDFQYL------PFAVQCL--CTFGSQIWVGYM----NGIVQV 483 (842)
Q Consensus 417 ~~~~~v~al~~s~dg~l~Sgs~DgtIrlWD~-~g~~l~~l~~H------~~~V~sl--s~dG~~LasGs~----DgtIrl 483 (842)
.....+..+.++++|.. ..+.+|++||+ ++++...+..| ...|.++ ++||++|++.+. +..|++
T Consensus 208 ~~~~~~~~~~~~~~G~~---~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~ 284 (723)
T 1xfd_A 208 SIYPTVKPYHYPKAGSE---NPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTL 284 (723)
T ss_dssp SSSCCCEEEECCBTTSC---CCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEE
T ss_pred cCCCcceeccCCCCCCC---CCeeEEEEEECCCCceeEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEE
Confidence 12234566777777652 23458999999 56666667654 5677766 468998877653 468999
Q ss_pred EeCC-Ccccccccc-cccCEE----EEE--eCCCEEEE--EcCCC------Ceeecc
Q 003171 484 LDLE-GNLLGGWVA-HSSPVI----KMA--VGAGYIFT--LANHG------GIRGWN 524 (842)
Q Consensus 484 WD~~-g~~i~~l~g-H~~~V~----sla--~dg~~l~S--~S~Dg------tIrvWd 524 (842)
||++ |++...+.. |...|. +++ +||+.++. ...|+ .|.+||
T Consensus 285 ~d~~~g~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d 341 (723)
T 1xfd_A 285 CDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSS 341 (723)
T ss_dssp EETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEEC
T ss_pred EeCCCCcceEEEEeccCCEEeccCCCceEcCCCCeEEEEEecccCCCcceeEEEEEe
Confidence 9997 566555544 334433 444 68887774 44666 466666
|
| >1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B* | Back alignment and structure |
|---|
Probab=99.56 E-value=2.9e-13 Score=145.42 Aligned_cols=257 Identities=10% Similarity=0.065 Sum_probs=156.3
Q ss_pred CEEEEEeCCCcEEEEECCCCccCCCCCcceeEEec-ccCC-cEEEEEEecCCC-E-EEeeCCCcEEEEeCCCccceeecC
Q 003171 204 GVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQ-AHRG-PVLSLCISSYGD-L-WSGSEGGGIKIWPWEAIEKALSLK 279 (842)
Q Consensus 204 ~~LaSGs~DGtIrlWdl~~g~~~~~~~~~~~~~l~-gH~~-~V~slafs~dG~-L-~SgS~DgtIrvWd~~t~~~~l~~~ 279 (842)
++|++++.|++|++||+.++ +.+..+. ++.. .+.+++|+|+|+ + ++++.++.|.+||+.+++....+.
T Consensus 2 ~~~v~~~~~~~v~~~d~~~~--------~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~ 73 (337)
T 1pby_B 2 DYILAPARPDKLVVIDTEKM--------AVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRID 73 (337)
T ss_dssp EEEEEEETTTEEEEEETTTT--------EEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEE
T ss_pred cEEEEcCCCCeEEEEECCCC--------cEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEE
Confidence 47899999999999999886 4555554 3322 478899999996 5 467778999999997754322111
Q ss_pred CCceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcCCCCEEEEe-------------CCCcEEEEEccCCcEEE
Q 003171 280 PEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSA-------------GFLSFALWDARTRELLK 346 (842)
Q Consensus 280 ~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~-------------s~~tI~lWD~~tg~~l~ 346 (842)
.... +. ....+..++.++++..++.+ .++.|.+||+.+++.+.
T Consensus 74 ~~~~---------------------~~---~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~ 129 (337)
T 1pby_B 74 LSTP---------------------EE---RVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRK 129 (337)
T ss_dssp CCBT---------------------TE---EEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEE
T ss_pred cCCc---------------------cc---ccccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEE
Confidence 0000 00 00012345667777777776 35789999999998877
Q ss_pred EeecCCceEeeeecccCCCcccccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEee-cCc----cccCCCc
Q 003171 347 VFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAA-KGG----FGDDNRR 421 (842)
Q Consensus 347 ~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~-~g~----~~~~~~~ 421 (842)
.+...... ..+.++ +++..++++ ...+..+.. .+. +..+. .
T Consensus 130 ~~~~~~~~-~~~~~s-------------------------------~dg~~l~~~-~~~i~~~d~~~~~~~~~~~~~~-~ 175 (337)
T 1pby_B 130 AFEAPRQI-TMLAWA-------------------------------RDGSKLYGL-GRDLHVMDPEAGTLVEDKPIQS-W 175 (337)
T ss_dssp EEECCSSC-CCEEEC-------------------------------TTSSCEEEE-SSSEEEEETTTTEEEEEECSTT-T
T ss_pred EEeCCCCc-ceeEEC-------------------------------CCCCEEEEe-CCeEEEEECCCCcEeeeeeccc-c
Confidence 66532211 111222 222222222 112222221 111 11111 0
Q ss_pred eEEEEECCCCc-EEEEe-CCC-----------------------eEEEEcC-CCCee-eeeecCCccEEEEE--ecCCEE
Q 003171 422 TEALTTSIDGM-IWTGG-ANG-----------------------LLLQWDP-NGNRL-QDFQYLPFAVQCLC--TFGSQI 472 (842)
Q Consensus 422 v~al~~s~dg~-l~Sgs-~Dg-----------------------tIrlWD~-~g~~l-~~l~~H~~~V~sls--~dG~~L 472 (842)
...+.++|||. ++..+ .++ .|.+||+ ++++. ..+..|...+.+++ ++|++|
T Consensus 176 ~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l 255 (337)
T 1pby_B 176 EAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRA 255 (337)
T ss_dssp TTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTSSEE
T ss_pred CCCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCceEeecCCCCCceeeEEECCCCCEE
Confidence 01236788886 44433 222 4689999 56653 23445666676664 579999
Q ss_pred EEEecCcEEEEEeCC-CcccccccccccCEEEEE--eCCCEEEEEcCCCCeeeccccCCC
Q 003171 473 WVGYMNGIVQVLDLE-GNLLGGWVAHSSPVIKMA--VGAGYIFTLANHGGIRGWNVTSPG 529 (842)
Q Consensus 473 asGs~DgtIrlWD~~-g~~i~~l~gH~~~V~sla--~dg~~l~S~S~DgtIrvWd~~~~~ 529 (842)
+++ ++.|++||++ ++.+..+..+ ..+.+++ +|+++++.++.|+.|++||+.+..
T Consensus 256 ~~~--~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~i~v~d~~~~~ 312 (337)
T 1pby_B 256 FGA--YNVLESFDLEKNASIKRVPLP-HSYYSVNVSTDGSTVWLGGALGDLAAYDAETLE 312 (337)
T ss_dssp EEE--ESEEEEEETTTTEEEEEEECS-SCCCEEEECTTSCEEEEESBSSEEEEEETTTCC
T ss_pred EEe--CCeEEEEECCCCcCcceecCC-CceeeEEECCCCCEEEEEcCCCcEEEEECcCCc
Confidence 988 7999999997 5666665543 3456665 578889989999999999987643
|
| >3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans} | Back alignment and structure |
|---|
Probab=99.54 E-value=1.2e-12 Score=141.14 Aligned_cols=222 Identities=9% Similarity=-0.002 Sum_probs=145.1
Q ss_pred EEcCCC-CEEEEEeCCCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCCC-EEEee-CCCcEEEEeCCCccc
Q 003171 198 VGDEAS-GVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGS-EGGGIKIWPWEAIEK 274 (842)
Q Consensus 198 a~dpdg-~~LaSGs~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS-~DgtIrvWd~~t~~~ 274 (842)
.|++++ ..+++++.+++|++||+.++ +....+..+...+ +++|+|+|+ |+.++ .++.|.+||+.+++.
T Consensus 4 ~~~~~~~~~~v~~~~~~~v~~~d~~~~--------~~~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~ 74 (331)
T 3u4y_A 4 MFQTTSNFGIVVEQHLRRISFFSTDTL--------EILNQITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPP 74 (331)
T ss_dssp ---CCCCEEEEEEGGGTEEEEEETTTC--------CEEEEEECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSC
T ss_pred eEcCCCCEEEEEecCCCeEEEEeCccc--------ceeeeEEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCce
Confidence 344444 45778889999999999987 5555666666667 999999998 66554 489999999976542
Q ss_pred -eeecCCCceeeeEEEEeeceeecccceeccceeeeecCCEEE-EEEcCCCCEEEEeCCC----cEEEEEccCCcEEEEe
Q 003171 275 -ALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKN-LLSDHSRAKVWSAGFL----SFALWDARTRELLKVF 348 (842)
Q Consensus 275 -~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~-las~~~~~~v~s~s~~----tI~lWD~~tg~~l~~l 348 (842)
...... ...... +++++++..++++... .|.+||+.+++++..+
T Consensus 75 ~~~~~~~------------------------------~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~ 124 (331)
T 3u4y_A 75 KVVAIQE------------------------------GQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTI 124 (331)
T ss_dssp EEEEEEE------------------------------CSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEEEEE
T ss_pred eEEeccc------------------------------CCCCccceEECCCCCEEEEecCCCCcccEEEEECCCCCeEEEE
Confidence 111000 111223 6667778877755544 8999999988775543
Q ss_pred ecCCceEeeeecccCCCcccccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEeecCccccCCCceEEEEEC
Q 003171 349 NIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTS 428 (842)
Q Consensus 349 ~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~al~~s 428 (842)
... .....++++
T Consensus 125 ~~~--------------------------------------------------------------------~~~~~~~~s 136 (331)
T 3u4y_A 125 PIP--------------------------------------------------------------------YDAVGIAIS 136 (331)
T ss_dssp ECC--------------------------------------------------------------------TTEEEEEEC
T ss_pred ECC--------------------------------------------------------------------CCccceEEC
Confidence 211 012357788
Q ss_pred CCCc-EEEE-eCCCe-EEEEcCC--CCee---eeeecCCccEEEE--EecCCEEEEEe-cCcEEEEEeCC-Ccc---ccc
Q 003171 429 IDGM-IWTG-GANGL-LLQWDPN--GNRL---QDFQYLPFAVQCL--CTFGSQIWVGY-MNGIVQVLDLE-GNL---LGG 493 (842)
Q Consensus 429 ~dg~-l~Sg-s~Dgt-IrlWD~~--g~~l---~~l~~H~~~V~sl--s~dG~~LasGs-~DgtIrlWD~~-g~~---i~~ 493 (842)
|||+ ++++ ..++. |.+|++. |... .....+...+.++ +++|++|++++ .+++|++||++ ++. +..
T Consensus 137 pdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~ 216 (331)
T 3u4y_A 137 PNGNGLILIDRSSANTVRRFKIDADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENITLLNA 216 (331)
T ss_dssp TTSSCEEEEEETTTTEEEEEEECTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCEEEEE
T ss_pred CCCCEEEEEecCCCceEEEEEECCCCcEeecCCccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcccceeee
Confidence 9986 6544 45577 9999983 3321 1111233445655 45788776655 58999999987 666 666
Q ss_pred ccccccCEEEEE--eCCCEEEE-EcCCCCeeeccccC
Q 003171 494 WVAHSSPVIKMA--VGAGYIFT-LANHGGIRGWNVTS 527 (842)
Q Consensus 494 l~gH~~~V~sla--~dg~~l~S-~S~DgtIrvWd~~~ 527 (842)
+..+ ..+..++ +||++++. ...++.|.+||+.+
T Consensus 217 ~~~~-~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~ 252 (331)
T 3u4y_A 217 VGTN-NLPGTIVVSRDGSTVYVLTESTVDVFNFNQLS 252 (331)
T ss_dssp EECS-SCCCCEEECTTSSEEEEECSSEEEEEEEETTT
T ss_pred ccCC-CCCceEEECCCCCEEEEEEcCCCEEEEEECCC
Confidence 6544 4455555 57887664 44688899999765
|
| >1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1 | Back alignment and structure |
|---|
Probab=99.54 E-value=6.9e-12 Score=132.88 Aligned_cols=234 Identities=8% Similarity=0.101 Sum_probs=157.1
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEec------ccCCcEEEEEE-ecCCCEEEeeC--CC
Q 003171 192 SSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQ------AHRGPVLSLCI-SSYGDLWSGSE--GG 262 (842)
Q Consensus 192 ~~V~~la~dpdg~~LaSGs~DGtIrlWdl~~g~~~~~~~~~~~~~l~------gH~~~V~slaf-s~dG~L~SgS~--Dg 262 (842)
..+.+++++++|+++++.+.++.|++||..+ +....+. +|...+.+|++ .++|+||.+.. ++
T Consensus 30 ~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~g---------~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~ 100 (286)
T 1q7f_A 30 TEPSGVAVNAQNDIIVADTNNHRIQIFDKEG---------RFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTH 100 (286)
T ss_dssp SCEEEEEECTTCCEEEEEGGGTEEEEECTTS---------CEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGC
T ss_pred CCCceEEECCCCCEEEEECCCCEEEEECCCC---------cEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCC
Confidence 4678899999999888889999999999874 3344442 45567899999 47888775553 89
Q ss_pred cEEEEeCCCccceeecCCCceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcCCCCEEEEeC-CCcEEEEEccC
Q 003171 263 GIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDART 341 (842)
Q Consensus 263 tIrvWd~~t~~~~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s-~~tI~lWD~~t 341 (842)
.|++|+.+. +....+... .......++.++++..+++.. ...|.+||..
T Consensus 101 ~i~~~d~~g-~~~~~~~~~----------------------------~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~- 150 (286)
T 1q7f_A 101 QIQIYNQYG-QFVRKFGAT----------------------------ILQHPRGVTVDNKGRIIVVECKVMRVIIFDQN- 150 (286)
T ss_dssp EEEEECTTS-CEEEEECTT----------------------------TCSCEEEEEECTTSCEEEEETTTTEEEEECTT-
T ss_pred EEEEECCCC-cEEEEecCc----------------------------cCCCceEEEEeCCCCEEEEECCCCEEEEEcCC-
Confidence 999999533 211111000 012355677777665443433 3578888853
Q ss_pred CcEEEEeecCCceEeeeecccCCCcccccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEeecCccccCCCc
Q 003171 342 RELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRR 421 (842)
Q Consensus 342 g~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~ 421 (842)
++.+..+... .+...
T Consensus 151 g~~~~~~~~~-----------------------------------------------------------------~~~~~ 165 (286)
T 1q7f_A 151 GNVLHKFGCS-----------------------------------------------------------------KHLEF 165 (286)
T ss_dssp SCEEEEEECT-----------------------------------------------------------------TTCSS
T ss_pred CCEEEEeCCC-----------------------------------------------------------------CccCC
Confidence 4433322100 01123
Q ss_pred eEEEEECCCCcEEEE-eCCCeEEEEcCCCCeeeeeecC--CccEEEEEe--cCCEEEEEecCc-EEEEEeCCCccccccc
Q 003171 422 TEALTTSIDGMIWTG-GANGLLLQWDPNGNRLQDFQYL--PFAVQCLCT--FGSQIWVGYMNG-IVQVLDLEGNLLGGWV 495 (842)
Q Consensus 422 v~al~~s~dg~l~Sg-s~DgtIrlWD~~g~~l~~l~~H--~~~V~sls~--dG~~LasGs~Dg-tIrlWD~~g~~i~~l~ 495 (842)
+..++++++|.++.+ +.++.|++||.+|+.+.++..+ ...+..++. +|+.+++...++ .|++||.+|+.+..+.
T Consensus 166 p~~i~~~~~g~l~v~~~~~~~i~~~~~~g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~~g~~~~~~~ 245 (286)
T 1q7f_A 166 PNGVVVNDKQEIFISDNRAHCVKVFNYEGQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQDGQLISALE 245 (286)
T ss_dssp EEEEEECSSSEEEEEEGGGTEEEEEETTCCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECTTSCEEEEEE
T ss_pred cEEEEECCCCCEEEEECCCCEEEEEcCCCCEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECCCCCEEEEEc
Confidence 456888999997655 4578999999998888877543 356777776 566666665665 9999999888877776
Q ss_pred cccc--CEEEEE--eCCCEEEEEcCCCCeeeccccCCCC
Q 003171 496 AHSS--PVIKMA--VGAGYIFTLANHGGIRGWNVTSPGP 530 (842)
Q Consensus 496 gH~~--~V~sla--~dg~~l~S~S~DgtIrvWd~~~~~~ 530 (842)
.|.. .+.+++ ++|+.+++ +.|++|++|++....|
T Consensus 246 ~~~~~~~~~~i~~~~~g~l~vs-~~~~~v~v~~~~~~~p 283 (286)
T 1q7f_A 246 SKVKHAQCFDVALMDDGSVVLA-SKDYRLYIYRYVQLAP 283 (286)
T ss_dssp ESSCCSCEEEEEEETTTEEEEE-ETTTEEEEEECSCCCC
T ss_pred ccCCCCcceeEEECCCCcEEEE-CCCCeEEEEEcccccc
Confidence 6543 366776 46766666 6799999999765443
|
| >1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.54 E-value=6e-14 Score=169.03 Aligned_cols=285 Identities=10% Similarity=-0.032 Sum_probs=166.4
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEecccCC---cEEEEEEecCCC-EEEeeC---------CC
Q 003171 196 CMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRG---PVLSLCISSYGD-LWSGSE---------GG 262 (842)
Q Consensus 196 ~la~dpdg~~LaSGs~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~---~V~slafs~dG~-L~SgS~---------Dg 262 (842)
+++|+|+|++++++ .|++|++||+.++ +....+.+|.. .|.+++|||||+ |++++. |+
T Consensus 20 ~~~~s~dg~~~~~~-~d~~i~~~~~~~g--------~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~ 90 (719)
T 1z68_A 20 FPNWISGQEYLHQS-ADNNIVLYNIETG--------QSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTA 90 (719)
T ss_dssp CCEESSSSEEEEEC-TTSCEEEEESSSC--------CEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEE
T ss_pred ccEECCCCeEEEEc-CCCCEEEEEcCCC--------cEEEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecce
Confidence 57899999766654 6999999999987 45555566654 489999999998 677665 79
Q ss_pred cEEEEeCCCccce--eecCCCceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcCCCCEEEEeCCCcEEEEEcc
Q 003171 263 GIKIWPWEAIEKA--LSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGFLSFALWDAR 340 (842)
Q Consensus 263 tIrvWd~~t~~~~--l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s~~tI~lWD~~ 340 (842)
+|++||+++++.. ..+ ...+..++.+++|..|+.+.+++|++||+.
T Consensus 91 ~i~~~d~~~g~~~~~~~l--------------------------------~~~~~~~~~SPDG~~la~~~~~~i~~~~~~ 138 (719)
T 1z68_A 91 TYYIYDLSNGEFVRGNEL--------------------------------PRPIQYLCWSPVGSKLAYVYQNNIYLKQRP 138 (719)
T ss_dssp EEEEEETTTTEECCSSCC--------------------------------CSSBCCEEECSSTTCEEEEETTEEEEESST
T ss_pred EEEEEECCCCccccceec--------------------------------CcccccceECCCCCEEEEEECCeEEEEeCC
Confidence 9999999775420 000 112445677888888888888899999999
Q ss_pred CCcEEEEee-cCCc-eE----------------eeeecccCCCcccc----c-ceEEEEEecCCCCc--cceeeeEeecC
Q 003171 341 TRELLKVFN-IDGQ-IE----------------NRVDMSLLPDFAME----D-EFKTKIVTSSKKDK--AQSSFGFFQRS 395 (842)
Q Consensus 341 tg~~l~~l~-~~~~-~~----------------~~~~~s~~~~~~~~----~-~~~~~~~s~~~~~~--~~~s~~~~~~~ 395 (842)
++++..... ++.. +. ..+.++++....+. + .++........... ....+.+..
T Consensus 139 ~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~-- 216 (719)
T 1z68_A 139 GDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPK-- 216 (719)
T ss_dssp TSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCB--
T ss_pred CCCcEEEecCCCcCCeEcccccceeeeecccCcccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCC--
Confidence 988754321 1111 00 12233332221110 0 00000000000000 000000000
Q ss_pred cceEEecCC---cEEEEee-cCc------------cccCCCceEEEEECCCCcEE-EEeC--C--CeEEEEc----C-CC
Q 003171 396 RNAIMGAAD---AVRRVAA-KGG------------FGDDNRRTEALTTSIDGMIW-TGGA--N--GLLLQWD----P-NG 449 (842)
Q Consensus 396 ~~~~~g~~~---~v~~v~~-~g~------------~~~~~~~v~al~~s~dg~l~-Sgs~--D--gtIrlWD----~-~g 449 (842)
.|... .+..+.. .+. +..+...+..+++|||++++ +... + ..|.+|| + +|
T Consensus 217 ----~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g 292 (719)
T 1z68_A 217 ----AGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTW 292 (719)
T ss_dssp ----TTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSE
T ss_pred ----CCCCCCeeEEEEEECCCCCccceeEccCCccCCCCcceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCC
Confidence 01111 1222221 111 22456678899999999864 4322 2 2488999 8 57
Q ss_pred Ceeeee----ecCCccEE-------EEEecCCEEEE--EecCc--EEEEEeCCCcccccccccccCEEEEE-eCCCEEEE
Q 003171 450 NRLQDF----QYLPFAVQ-------CLCTFGSQIWV--GYMNG--IVQVLDLEGNLLGGWVAHSSPVIKMA-VGAGYIFT 513 (842)
Q Consensus 450 ~~l~~l----~~H~~~V~-------sls~dG~~Las--Gs~Dg--tIrlWD~~g~~i~~l~gH~~~V~sla-~dg~~l~S 513 (842)
++...+ .+|..+|. .+++||+.|+. +..+| .|.+||+.+.....+..+...|..+. .+++.++.
T Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~~~~lt~~~~~v~~~~~~d~~~i~~ 372 (719)
T 1z68_A 293 DCPKTQEHIEESRTGWAGGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVENAIQITSGKWEAINIFRVTQDSLFY 372 (719)
T ss_dssp ECCGGGEEEEECSSSCSSSSSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCSTTCEECSCSSSCEEEEEEECSSEEEE
T ss_pred ceEEEEecccccCCceEccccCCccEECCCCCeEEEEEEccCCceEEEEEECCCCceEecccCceEEEEEEEEeCCEEEE
Confidence 766666 46776665 35678985554 33444 67888887554666766766676643 37777775
Q ss_pred EcCC-----CCeeeccccC
Q 003171 514 LANH-----GGIRGWNVTS 527 (842)
Q Consensus 514 ~S~D-----gtIrvWd~~~ 527 (842)
.+.+ +++++|.+..
T Consensus 373 ~~~~~~~~~~~~~l~~~~~ 391 (719)
T 1z68_A 373 SSNEFEEYPGRRNIYRISI 391 (719)
T ss_dssp EESCGGGCTTCBEEEEEEC
T ss_pred EEecCCCCCceEEEEEEeC
Confidence 5554 8899999764
|
| >2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A | Back alignment and structure |
|---|
Probab=99.53 E-value=4.4e-13 Score=152.54 Aligned_cols=176 Identities=11% Similarity=0.031 Sum_probs=113.4
Q ss_pred EEEecCCEEEEecCCCEEEEeCCCCccccccccccccCCCCC-CCCCCeeeeeecCCCeEEEEEcCCCCEEE----EEeC
Q 003171 137 TIVCTEEQLWAGGENGLRVWNLKELYDESESDSVSVSKSKGE-DGTAPFKESVKGVSSVMCMVGDEASGVVW----SGHR 211 (842)
Q Consensus 137 ~l~~~~~~l~~~~D~~vrvWdl~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~~~V~~la~dpdg~~La----SGs~ 211 (842)
++......++++...+++||+......... .+..... ....+. ..+....+|.+++|+|+|++|+ ||+.
T Consensus 43 avs~~~~~l~~~~~dgv~v~~~~~~~~~~~-----~~~~~~~~~~~~~~-~~~~~~~~v~~l~~spdg~~lav~~~sgs~ 116 (434)
T 2oit_A 43 AVSNKYGLVFAGGASGLQIFPTKNLLIQNK-----PGDDPNKIVDKVQG-LLVPMKFPIHHLALSCDNLTLSACMMSSEY 116 (434)
T ss_dssp EEETTTTEEEEEETTEEEEEEHHHHCCCCC-----TTCCTTCEEECCCC-EEECCSSCEEEEEECTTSCEEEEEEEETTT
T ss_pred EEecCCCEEEEECCCEEEEEEchHhhhhcc-----cccCcccccccCcc-ccccCCCcccEEEEcCCCCEEEEEEeccCC
Confidence 344445677776656699998743211100 0000000 000010 1111256799999999999999 8999
Q ss_pred CCcEEEEECCCCcc---CCCCCcceeEEecccCCcEEEEEEecC-CC-EEEeeCCCcEEEEeCCCccceeecCCCceeee
Q 003171 212 DGRIMCWKMNARLL---DSDDGFGEVLSWQAHRGPVLSLCISSY-GD-LWSGSEGGGIKIWPWEAIEKALSLKPEERHTA 286 (842)
Q Consensus 212 DGtIrlWdl~~g~~---~~~~~~~~~~~l~gH~~~V~slafs~d-G~-L~SgS~DgtIrvWd~~t~~~~l~~~~~~~~~~ 286 (842)
|++|++||+.++.. .....+.....+.+|.+.|++|+|+|+ +. |+||+.||+|++||+.++.......
T Consensus 117 d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~~~~~~------- 189 (434)
T 2oit_A 117 GSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVKVCATL------- 189 (434)
T ss_dssp EEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEEEEEEE-------
T ss_pred CceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCcceeecc-------
Confidence 99999999865300 000112234567899999999999998 55 7899999999999997642211100
Q ss_pred EEEEeeceeecccceeccceeeeecCCEEEEEEcCCCCEEEEeC-CCcEEEEEccCCcEEEEe
Q 003171 287 ALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVF 348 (842)
Q Consensus 287 ~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s-~~tI~lWD~~tg~~l~~l 348 (842)
+| ...+.+++.++++..+++++ +++|++||++ ++...++
T Consensus 190 ------------~~----------~~~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~~~~ 229 (434)
T 2oit_A 190 ------------PS----------TVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEKKVI 229 (434)
T ss_dssp ------------CG----------GGCEEEEEECTTSSCEEEEETTSCEEEECTT-CCEEEEE
T ss_pred ------------CC----------CCceeEEEEcCCCCEEEEEcCCCcEEEEccC-Ccccccc
Confidence 11 34678889998888888877 6799999998 5554443
|
| >3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp} | Back alignment and structure |
|---|
Probab=99.49 E-value=2.3e-12 Score=142.19 Aligned_cols=271 Identities=11% Similarity=0.045 Sum_probs=153.1
Q ss_pred EEEcCCCCEEEEEeC-CCc--EEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCCC-EEEeeCCCcEEEEeCCCc
Q 003171 197 MVGDEASGVVWSGHR-DGR--IMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAI 272 (842)
Q Consensus 197 la~dpdg~~LaSGs~-DGt--IrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~~t~ 272 (842)
.+|+|||+.|+.++. ||. |.+||+.++ +......+|...+.+++|||||+ |+.++.++.|++||+.++
T Consensus 41 ~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g--------~~~~lt~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~g 112 (388)
T 3pe7_A 41 KCFTRDGSKLLFGGAFDGPWNYYLLDLNTQ--------VATQLTEGRGDNTFGGFLSPDDDALFYVKDGRNLMRVDLATL 112 (388)
T ss_dssp CCBCTTSCEEEEEECTTSSCEEEEEETTTC--------EEEECCCSSCBCSSSCEECTTSSEEEEEETTTEEEEEETTTC
T ss_pred ccCCCCCCEEEEEEcCCCCceEEEEeCCCC--------ceEEeeeCCCCCccceEEcCCCCEEEEEeCCCeEEEEECCCC
Confidence 679999999999887 774 778898886 44444566766666788999998 888889999999999876
Q ss_pred cceeecCCCceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcCCCCEEEE----------------------e-
Q 003171 273 EKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWS----------------------A- 329 (842)
Q Consensus 273 ~~~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s----------------------~- 329 (842)
+.............. . ....++++..++. .
T Consensus 113 ~~~~~~~~~~~~~~~--------------------------~-~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (388)
T 3pe7_A 113 EENVVYQVPAEWVGY--------------------------G-TWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTK 165 (388)
T ss_dssp CEEEEEECCTTEEEE--------------------------E-EEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGC
T ss_pred cceeeeechhhcccc--------------------------c-ceeECCCCCeeccccccCcccccccccchhhhhhccC
Confidence 533211111110000 0 0111233333321 1
Q ss_pred CCCcEEEEEccCCcEEEEeecCCceEeeeeccc-CCCcccccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEE
Q 003171 330 GFLSFALWDARTRELLKVFNIDGQIENRVDMSL-LPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRR 408 (842)
Q Consensus 330 s~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~-~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~ 408 (842)
....|.+||+.+++......... ....+.+++ .... +........... ...++.
T Consensus 166 ~~~~l~~~d~~~g~~~~l~~~~~-~~~~~~~sp~dg~~-------l~~~~~~~~~~~-----------------~~~l~~ 220 (388)
T 3pe7_A 166 PCCRLMRVDLKTGESTVILQENQ-WLGHPIYRPYDDST-------VAFCHEGPHDLV-----------------DARMWL 220 (388)
T ss_dssp CCEEEEEEETTTCCEEEEEEESS-CEEEEEEETTEEEE-------EEEEECSCTTTS-----------------SCSEEE
T ss_pred CcceEEEEECCCCceEEeecCCc-cccccEECCCCCCE-------EEEEEecCCCCC-----------------cceEEE
Confidence 12468999999998755443322 222333333 2111 001111000000 001222
Q ss_pred EeecC----ccccCC--CceEEEEECCCCc-EEEEeC-CC----eEEEEcC-CCCe--eeeeecCCccE-----EEEEec
Q 003171 409 VAAKG----GFGDDN--RRTEALTTSIDGM-IWTGGA-NG----LLLQWDP-NGNR--LQDFQYLPFAV-----QCLCTF 468 (842)
Q Consensus 409 v~~~g----~~~~~~--~~v~al~~s~dg~-l~Sgs~-Dg----tIrlWD~-~g~~--l~~l~~H~~~V-----~sls~d 468 (842)
+...+ .+..+. ..+..+++||||+ |+..+. ++ .|.+||+ +|+. +..+.++.... ..+++|
T Consensus 221 ~d~~~~~~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spd 300 (388)
T 3pe7_A 221 INEDGTNMRKVKTHAEGESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGD 300 (388)
T ss_dssp EETTSCCCEESCCCCTTEEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEE
T ss_pred EeCCCCceEEeeeCCCCcccccceECCCCCEEEEEecCCCCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccC
Confidence 22111 122222 2466788999998 654442 22 4999999 5653 33333311111 157899
Q ss_pred CCEEEEE---------ecCcEEEEEeCCCccccccccccc-----------CEEEEE--eCCCEEEEEc-CCCCeeeccc
Q 003171 469 GSQIWVG---------YMNGIVQVLDLEGNLLGGWVAHSS-----------PVIKMA--VGAGYIFTLA-NHGGIRGWNV 525 (842)
Q Consensus 469 G~~LasG---------s~DgtIrlWD~~g~~i~~l~gH~~-----------~V~sla--~dg~~l~S~S-~DgtIrvWd~ 525 (842)
|++|+.. ..+..|.+||+++..+..+..|.. .+.+++ +||+.|+..+ .++...+|.+
T Consensus 301 g~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~spDg~~l~~~s~~~g~~~l~~~ 380 (388)
T 3pe7_A 301 GSDAPVDVQDDSGYKIENDPFLYVFNMKNGTQHRVARHDTSWKVFEGDRQVTHPHPSFTPDDKQILFTSDVHGKPALYLA 380 (388)
T ss_dssp ECCC------------CCCCEEEEEETTTTEEEEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEE
T ss_pred CCcceeEeeeccccccCCCCEEEEEeccCCceEEeccccCcccccccccccCCCCccCCCCCCEEEEEecCCCceeEEEE
Confidence 9977753 446799999998665566666665 455544 6888877555 5788888876
Q ss_pred cC
Q 003171 526 TS 527 (842)
Q Consensus 526 ~~ 527 (842)
..
T Consensus 381 ~l 382 (388)
T 3pe7_A 381 TL 382 (388)
T ss_dssp EC
T ss_pred EC
Confidence 54
|
| >1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.47 E-value=8.2e-13 Score=159.09 Aligned_cols=315 Identities=8% Similarity=-0.023 Sum_probs=168.6
Q ss_pred EEecCCCEEEEeCCCCccccccccccccCCCCCCCCCCeeeeeec--CCCeEEEEEcCCCCEEEEEeC---------CCc
Q 003171 146 WAGGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKG--VSSVMCMVGDEASGVVWSGHR---------DGR 214 (842)
Q Consensus 146 ~~~~D~~vrvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g--~~~V~~la~dpdg~~LaSGs~---------DGt 214 (842)
+.+.|++|++||+++..... +.. .+. ...|.+++|||||++|++++. |++
T Consensus 31 ~~~~d~~i~~~~~~~g~~~~------------------~~~-~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~ 91 (719)
T 1z68_A 31 HQSADNNIVLYNIETGQSYT------------------ILS-NRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTAT 91 (719)
T ss_dssp EECTTSCEEEEESSSCCEEE------------------EEC-HHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEE
T ss_pred EEcCCCCEEEEEcCCCcEEE------------------EEc-cccccccceeeEEECCCCCeEEEEecCceeEEeecceE
Confidence 34568999999997654321 101 010 114889999999999999987 799
Q ss_pred EEEEECCCCccCCCCCccee--EEecccCCcEEEEEEecCCC-EEEeeCCCcEEEEeCCCccceeecCCCceeeeEEEEe
Q 003171 215 IMCWKMNARLLDSDDGFGEV--LSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVE 291 (842)
Q Consensus 215 IrlWdl~~g~~~~~~~~~~~--~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~~t~~~~l~~~~~~~~~~~l~~~ 291 (842)
|++||+.++ +.+ ..+ .+.|.+++|||||+ |++++ |++|++|++.+++.. .+.........
T Consensus 92 i~~~d~~~g--------~~~~~~~l---~~~~~~~~~SPDG~~la~~~-~~~i~~~~~~~g~~~-~l~~~~~~~~v---- 154 (719)
T 1z68_A 92 YYIYDLSNG--------EFVRGNEL---PRPIQYLCWSPVGSKLAYVY-QNNIYLKQRPGDPPF-QITFNGRENKI---- 154 (719)
T ss_dssp EEEEETTTT--------EECCSSCC---CSSBCCEEECSSTTCEEEEE-TTEEEEESSTTSCCE-ECCCCCBTTTE----
T ss_pred EEEEECCCC--------ccccceec---CcccccceECCCCCEEEEEE-CCeEEEEeCCCCCcE-EEecCCCcCCe----
Confidence 999999986 221 222 35688999999998 77665 789999999775432 12111100000
Q ss_pred eceeecccceeccceee-eecCCEEEEEEcCCCCEEEEeCC-----------------------------------CcEE
Q 003171 292 RSYIDLRSHLSVNGFSS-ILTSDIKNLLSDHSRAKVWSAGF-----------------------------------LSFA 335 (842)
Q Consensus 292 ~s~~~l~~~~~~~~~~~-~~s~~v~~las~~~~~~v~s~s~-----------------------------------~tI~ 335 (842)
+.++ ...+-. -.......++.++++..|+.++. .+|+
T Consensus 155 -----~~g~--~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~ 227 (719)
T 1z68_A 155 -----FNGI--PDWVYEEEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIF 227 (719)
T ss_dssp -----EESS--CCHHHHHHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEE
T ss_pred -----Eccc--ccceeeeecccCcccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEE
Confidence 0000 000000 00000123444555555554431 1678
Q ss_pred EEEccCCcEE---EE-----eecCCceEeeeecccCCCcccccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEE
Q 003171 336 LWDARTRELL---KV-----FNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVR 407 (842)
Q Consensus 336 lWD~~tg~~l---~~-----l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~ 407 (842)
+||+.+++.+ .. +..+......+.++++.... +....+... .. .++
T Consensus 228 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~~~--------~~~~~~~~~-~~-----------------~l~ 281 (719)
T 1z68_A 228 IIDTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVTDERVC--------LQWLKRVQN-VS-----------------VLS 281 (719)
T ss_dssp EEESSCHHHHCCEECCCCHHHHTSCEEEEEEEESSSSEEE--------EEEEESSTT-EE-----------------EEE
T ss_pred EEECCCCCccceeEccCCccCCCCcceEEEeEEeCCCeEE--------EEEeccccC-eE-----------------EEE
Confidence 9999887642 11 11222222333444321100 000000000 00 011
Q ss_pred EEe----e-cC----cc----ccCCCceE-----EEEECCCCc-EEE--EeCCC--eEEEEcCCCCeeeeeecCCccEEE
Q 003171 408 RVA----A-KG----GF----GDDNRRTE-----ALTTSIDGM-IWT--GGANG--LLLQWDPNGNRLQDFQYLPFAVQC 464 (842)
Q Consensus 408 ~v~----~-~g----~~----~~~~~~v~-----al~~s~dg~-l~S--gs~Dg--tIrlWD~~g~~l~~l~~H~~~V~s 464 (842)
.+. . .| .+ ..+...+. .++++|||+ ++. ...+| .|.+||+.+...+.+..+...|..
T Consensus 282 ~~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~~~~lt~~~~~v~~ 361 (719)
T 1z68_A 282 ICDFREDWQTWDCPKTQEHIEESRTGWAGGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVENAIQITSGKWEAIN 361 (719)
T ss_dssp EEEECSSSSSEECCGGGEEEEECSSSCSSSSSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCSTTCEECSCSSSCEEE
T ss_pred EEcccCCCCCCceEEEEecccccCCceEccccCCccEECCCCCeEEEEEEccCCceEEEEEECCCCceEecccCceEEEE
Confidence 111 1 01 11 12333444 678999997 433 33454 688889865446677766666665
Q ss_pred EE-ecCCEEEEEecC-----cEEEEEeCC---Cc----ccc-cccccccCEEEEE--eCCCEEE-EEcCC--CCeeeccc
Q 003171 465 LC-TFGSQIWVGYMN-----GIVQVLDLE---GN----LLG-GWVAHSSPVIKMA--VGAGYIF-TLANH--GGIRGWNV 525 (842)
Q Consensus 465 ls-~dG~~LasGs~D-----gtIrlWD~~---g~----~i~-~l~gH~~~V~sla--~dg~~l~-S~S~D--gtIrvWd~ 525 (842)
+. .+|+.|+..+.+ ++++||.+. +. ++. .+.+|...+..+. +|+++++ +++.+ ..+.+|++
T Consensus 362 ~~~~d~~~i~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~s~dg~~l~~~~s~~~~p~~~l~d~ 441 (719)
T 1z68_A 362 IFRVTQDSLFYSSNEFEEYPGRRNIYRISIGSYPPSKKCVTCHLRKERCQYYTASFSDYAKYYALVCYGPGIPISTLHDG 441 (719)
T ss_dssp EEEECSSEEEEEESCGGGCTTCBEEEEEECSSSSCCEEESSTTTTTTTBCBEEEEECGGGSSEEEEECCBSSCEEEEECS
T ss_pred EEEEeCCEEEEEEecCCCCCceEEEEEEeCCCCCCCceeccCccCCCCCceEEEEECCCCCEEEEEcCCCCCCeEEEEEC
Confidence 42 288877766654 889999753 32 222 1344777777665 5677655 45544 46788887
Q ss_pred cCCC
Q 003171 526 TSPG 529 (842)
Q Consensus 526 ~~~~ 529 (842)
.+..
T Consensus 442 ~~g~ 445 (719)
T 1z68_A 442 RTDQ 445 (719)
T ss_dssp SSCC
T ss_pred CCCC
Confidence 6543
|
| >3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A | Back alignment and structure |
|---|
Probab=99.45 E-value=1.7e-11 Score=134.41 Aligned_cols=254 Identities=9% Similarity=0.092 Sum_probs=150.3
Q ss_pred CCCeEEEEEcCCCCEEEEEeCC----CcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCCC-EEEee-CCCcE
Q 003171 191 VSSVMCMVGDEASGVVWSGHRD----GRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGS-EGGGI 264 (842)
Q Consensus 191 ~~~V~~la~dpdg~~LaSGs~D----GtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS-~DgtI 264 (842)
...+..++++|+|++|++++.+ +.|++|+++... ..+..+.....|......+++ +|+ |++++ .+++|
T Consensus 49 ~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~----g~~~~~~~~~~~~~~p~~~~~--dg~~l~~~~~~~~~v 122 (361)
T 3scy_A 49 VANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEK----GTLHLLNTQKTMGADPCYLTT--NGKNIVTANYSGGSI 122 (361)
T ss_dssp CSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTT----TEEEEEEEEECSSSCEEEEEE--CSSEEEEEETTTTEE
T ss_pred CCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCC----CcEEEeeEeccCCCCcEEEEE--CCCEEEEEECCCCEE
Confidence 4567779999999999999986 799999886521 011223334445567778888 776 66554 68999
Q ss_pred EEEeCCCccceeecCCCceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcCCCCEEEEeC--CCcEEEEEccCC
Q 003171 265 KIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG--FLSFALWDARTR 342 (842)
Q Consensus 265 rvWd~~t~~~~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s--~~tI~lWD~~tg 342 (842)
.+|++.......... .. . ...+.+.... ......+..+++++++..++.+. ++.|.+|++...
T Consensus 123 ~~~~~~~~g~~~~~~---~~---~-------~~~g~~~~~~--~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~ 187 (361)
T 3scy_A 123 TVFPIGQDGALLPAS---DV---I-------EFKGSGPDKE--RQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPN 187 (361)
T ss_dssp EEEEBCTTSCBCSCS---EE---E-------ECCCCCSCTT--TCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTT
T ss_pred EEEEeCCCCcCcccc---ee---E-------EccCCCCCcc--ccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCC
Confidence 999996532111100 00 0 0000000000 00022356688888888666554 468999987643
Q ss_pred cE------EEEeecCCceEeeeecccCCCcccccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEeecCccc
Q 003171 343 EL------LKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFG 416 (842)
Q Consensus 343 ~~------l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~ 416 (842)
.. +.... .. . ... .
T Consensus 188 ~~~~~~~~l~~~~---~~------------------~--~~~-------------------------------------~ 207 (361)
T 3scy_A 188 ANADNKEKFLTKG---TP------------------E--AFK-------------------------------------V 207 (361)
T ss_dssp CCTTTCCCCEEEE---EE------------------E--EEE-------------------------------------C
T ss_pred CCcccccceeecc---cc------------------c--cee-------------------------------------c
Confidence 21 00000 00 0 000 0
Q ss_pred cCCCceEEEEECCCCc-EEEEe-CCCeEEEEcC-CCCe--eeeeec---CCccEEEE--EecCCEEEEEecC--cEEEEE
Q 003171 417 DDNRRTEALTTSIDGM-IWTGG-ANGLLLQWDP-NGNR--LQDFQY---LPFAVQCL--CTFGSQIWVGYMN--GIVQVL 484 (842)
Q Consensus 417 ~~~~~v~al~~s~dg~-l~Sgs-~DgtIrlWD~-~g~~--l~~l~~---H~~~V~sl--s~dG~~LasGs~D--gtIrlW 484 (842)
.....+..++|+|||+ +++++ .+++|.+||+ +|+. ++.+.. +...+.++ ++||++|+++..+ ++|.+|
T Consensus 208 ~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~ 287 (361)
T 3scy_A 208 APGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIF 287 (361)
T ss_dssp CTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEE
T ss_pred CCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEE
Confidence 1112345688999997 66666 6899999999 5643 333322 33345555 5689999776654 899999
Q ss_pred eCC---Cc--ccccccccccCEEEEE--eCCCEEEEEc-CCCCeeecccc
Q 003171 485 DLE---GN--LLGGWVAHSSPVIKMA--VGAGYIFTLA-NHGGIRGWNVT 526 (842)
Q Consensus 485 D~~---g~--~i~~l~gH~~~V~sla--~dg~~l~S~S-~DgtIrvWd~~ 526 (842)
++. |+ .+..+.. ...+.+++ +||++|+.++ .++.|++|.+.
T Consensus 288 ~~~~~~g~~~~~~~~~~-g~~~~~~~~spdg~~l~~~~~~~~~v~v~~~d 336 (361)
T 3scy_A 288 KVDETNGTLTKVGYQLT-GIHPRNFIITPNGKYLLVACRDTNVIQIFERD 336 (361)
T ss_dssp EECTTTCCEEEEEEEEC-SSCCCEEEECTTSCEEEEEETTTTEEEEEEEC
T ss_pred EEcCCCCcEEEeeEecC-CCCCceEEECCCCCEEEEEECCCCCEEEEEEE
Confidence 974 44 3344433 34556665 5788888776 67899998754
|
| >3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum} | Back alignment and structure |
|---|
Probab=99.45 E-value=1.6e-11 Score=133.77 Aligned_cols=206 Identities=12% Similarity=0.041 Sum_probs=128.6
Q ss_pred CCCeEEEEEcCCCCEEEEEe-CCCcEEEEECCCCccCCCCCcceeEEecc---------cCCcEEEEEEecCCCEE-Eee
Q 003171 191 VSSVMCMVGDEASGVVWSGH-RDGRIMCWKMNARLLDSDDGFGEVLSWQA---------HRGPVLSLCISSYGDLW-SGS 259 (842)
Q Consensus 191 ~~~V~~la~dpdg~~LaSGs-~DGtIrlWdl~~g~~~~~~~~~~~~~l~g---------H~~~V~slafs~dG~L~-SgS 259 (842)
...+.+++++|+|++|++++ .+++|++|++.... ....+..+.. +...+.+++|+|||+|+ ++.
T Consensus 85 ~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~~~g-----~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~ 159 (347)
T 3hfq_A 85 GTPPAYVAVDEARQLVYSANYHKGTAEVMKIAADG-----ALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDL 159 (347)
T ss_dssp SCCCSEEEEETTTTEEEEEETTTTEEEEEEECTTS-----CEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEET
T ss_pred CCCCEEEEECCCCCEEEEEeCCCCEEEEEEeCCCC-----CeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeC
Confidence 45678899999999999888 67899999986320 1122222211 12358999999999964 666
Q ss_pred CCCcEEEEeCCC-ccceeecCCCceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcCCCCEEEEeC--CCcEEE
Q 003171 260 EGGGIKIWPWEA-IEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG--FLSFAL 336 (842)
Q Consensus 260 ~DgtIrvWd~~t-~~~~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s--~~tI~l 336 (842)
.++.|++|++.. ++... ...+ .. . .......+++++++..++.+. ++.|.+
T Consensus 160 ~~~~v~~~~~~~~g~~~~--------~~~~-------~~----~-------~g~~p~~~~~spdg~~l~v~~~~~~~v~v 213 (347)
T 3hfq_A 160 GSDKVYVYNVSDAGQLSE--------QSVL-------TM----E-------AGFGPRHLVFSPDGQYAFLAGELSSQIAS 213 (347)
T ss_dssp TTTEEEEEEECTTSCEEE--------EEEE-------EC----C-------TTCCEEEEEECTTSSEEEEEETTTTEEEE
T ss_pred CCCEEEEEEECCCCcEEE--------eeeE-------Ec----C-------CCCCCceEEECCCCCEEEEEeCCCCEEEE
Confidence 789999999962 21100 0000 00 0 011345678888888666643 467999
Q ss_pred EEccC--CcEEEEeecCCceEeeeecccCCCcccccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEeecCc
Q 003171 337 WDART--RELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGG 414 (842)
Q Consensus 337 WD~~t--g~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~ 414 (842)
|++.. +++..... ..... . .
T Consensus 214 ~~~~~~~g~~~~~~~---------------------------~~~~~-~------------------------------~ 235 (347)
T 3hfq_A 214 LKYDTQTGAFTQLGI---------------------------VKTIP-A------------------------------D 235 (347)
T ss_dssp EEEETTTTEEEEEEE---------------------------EESSC-T------------------------------T
T ss_pred EEecCCCCceEEeee---------------------------eeecC-C------------------------------C
Confidence 98864 44311100 00000 0 0
Q ss_pred cccCCCceEEEEECCCCc-E-EEEeCCCeEEEEcCC--C--CeeeeeecCCccEEEEE--ecCCEEEEEec-CcEEEEEe
Q 003171 415 FGDDNRRTEALTTSIDGM-I-WTGGANGLLLQWDPN--G--NRLQDFQYLPFAVQCLC--TFGSQIWVGYM-NGIVQVLD 485 (842)
Q Consensus 415 ~~~~~~~v~al~~s~dg~-l-~Sgs~DgtIrlWD~~--g--~~l~~l~~H~~~V~sls--~dG~~LasGs~-DgtIrlWD 485 (842)
+ .....+..++++|||+ | +++..+++|.+||++ | +.+..+..|...+.+++ +||++|++++. +++|.+|+
T Consensus 236 ~-~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~ 314 (347)
T 3hfq_A 236 Y-TAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADGHLTLIQQISTEGDFPRDFDLDPTEAFVVVVNQNTDNATLYA 314 (347)
T ss_dssp C-CSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECGGGCEEEEEEEECSSSCCCEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred C-CCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECCCCcEEEeEEEecCCCCcCeEEECCCCCEEEEEEcCCCcEEEEE
Confidence 0 0112356788999997 5 455668999999984 3 44555666666666654 57999988876 48999995
Q ss_pred C
Q 003171 486 L 486 (842)
Q Consensus 486 ~ 486 (842)
+
T Consensus 315 ~ 315 (347)
T 3hfq_A 315 R 315 (347)
T ss_dssp E
T ss_pred E
Confidence 4
|
| >1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1 | Back alignment and structure |
|---|
Probab=99.43 E-value=6e-12 Score=135.45 Aligned_cols=222 Identities=12% Similarity=0.137 Sum_probs=137.6
Q ss_pred EEEEEeCCCcEEEEECCC-CccCCCCCcceeEEecccCCcEEEEEEecCCC-EEEeeCC-CcEEEEeCC--CccceeecC
Q 003171 205 VVWSGHRDGRIMCWKMNA-RLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEG-GGIKIWPWE--AIEKALSLK 279 (842)
Q Consensus 205 ~LaSGs~DGtIrlWdl~~-g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~D-gtIrvWd~~--t~~~~l~~~ 279 (842)
++++++.|++|++|+++. +. ........|...+.+++|+|+|+ |++++.+ ++|++|+++ ++....
T Consensus 7 l~~~~~~~~~v~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~--- 76 (343)
T 1ri6_A 7 VYIASPESQQIHVWNLNHEGA-------LTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTF--- 76 (343)
T ss_dssp EEEEEGGGTEEEEEEECTTSC-------EEEEEEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEE---
T ss_pred EEEeCCCCCeEEEEEECCCCc-------EEEeeeEecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceee---
Confidence 444558899999999863 21 12233346788899999999998 7777766 999999986 322110
Q ss_pred CCceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcCCCCEEEEeC--CCcEEEEEccCCcEEEEeecCCceEee
Q 003171 280 PEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG--FLSFALWDARTRELLKVFNIDGQIENR 357 (842)
Q Consensus 280 ~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s--~~tI~lWD~~tg~~l~~l~~~~~~~~~ 357 (842)
...+ .. ...+..+++++++..++.++ ++.|.+||+.++........
T Consensus 77 -----~~~~---------~~-----------~~~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~------- 124 (343)
T 1ri6_A 77 -----AAES---------AL-----------PGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDV------- 124 (343)
T ss_dssp -----EEEE---------EC-----------SSCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEE-------
T ss_pred -----cccc---------cc-----------CCCCcEEEEcCCCCEEEEEecCCCeEEEEECCCCcccccccc-------
Confidence 0000 00 11345677778888776654 45799999853321111000
Q ss_pred eecccCCCcccccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEeecCccccCCCceEEEEECCCCc-EEEE
Q 003171 358 VDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGM-IWTG 436 (842)
Q Consensus 358 ~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~al~~s~dg~-l~Sg 436 (842)
.. ....+.+++++|||. ++++
T Consensus 125 -------------------~~---------------------------------------~~~~~~~~~~s~dg~~l~~~ 146 (343)
T 1ri6_A 125 -------------------VE---------------------------------------GLDGCHSANISPDNRTLWVP 146 (343)
T ss_dssp -------------------EC---------------------------------------CCTTBCCCEECTTSSEEEEE
T ss_pred -------------------cc---------------------------------------CCCCceEEEECCCCCEEEEe
Confidence 00 001134567889986 7776
Q ss_pred e-CCCeEEEEcC-C-CCeee----eeec-CCccEEEEE--ecCCEEEEEe-cCcEEEEEeCC---Ccc--ccccc----c
Q 003171 437 G-ANGLLLQWDP-N-GNRLQ----DFQY-LPFAVQCLC--TFGSQIWVGY-MNGIVQVLDLE---GNL--LGGWV----A 496 (842)
Q Consensus 437 s-~DgtIrlWD~-~-g~~l~----~l~~-H~~~V~sls--~dG~~LasGs-~DgtIrlWD~~---g~~--i~~l~----g 496 (842)
+ .++.|++||+ + ++... .+.. ....+.+++ ++|++|++++ .++.|++||+. +++ ..... +
T Consensus 147 ~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~ 226 (343)
T 1ri6_A 147 ALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPEN 226 (343)
T ss_dssp EGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTT
T ss_pred cCCCCEEEEEEecCCCceeeecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCcc
Confidence 6 7899999999 4 54432 2232 234566664 5788776655 78999999984 322 22221 2
Q ss_pred c--ccCEEEEE--eCCCEEE-EEcCCCCeeecccc
Q 003171 497 H--SSPVIKMA--VGAGYIF-TLANHGGIRGWNVT 526 (842)
Q Consensus 497 H--~~~V~sla--~dg~~l~-S~S~DgtIrvWd~~ 526 (842)
| ...+.+++ +++++++ +.+.|+.|++|++.
T Consensus 227 ~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~ 261 (343)
T 1ri6_A 227 FSDTRWAADIHITPDGRHLYACDRTASLITVFSVS 261 (343)
T ss_dssp CCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEEC
T ss_pred ccccCCccceEECCCCCEEEEEecCCCEEEEEEEc
Confidence 2 23455665 4677776 66789999999976
|
| >4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A* | Back alignment and structure |
|---|
Probab=99.43 E-value=1.4e-10 Score=141.80 Aligned_cols=352 Identities=15% Similarity=0.234 Sum_probs=213.8
Q ss_pred ceeEEEEecC-CEEEEecCCCEEEEeCCCCccccccccccccCCCCCCCCCCeeeeeecCCCeEEEEEcCCCCEEEEEeC
Q 003171 133 CFLRTIVCTE-EQLWAGGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGHR 211 (842)
Q Consensus 133 ~~~~~l~~~~-~~l~~~~D~~vrvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~V~~la~dpdg~~LaSGs~ 211 (842)
..+++|..+. +.||+|++++|.+||..+...... .. ....+ ..+. ...|.++..|++| .||.|+.
T Consensus 263 ~~i~~i~~d~~g~lWigt~~Gl~~~~~~~~~~~~~--------~~--~~~~~--~~l~-~~~i~~i~~D~~g-~lWigt~ 328 (795)
T 4a2l_A 263 NYIRSLAMDSQNRLWIGTFNDLNIYHEGTDSFASY--------SS--NPVEN--GSLS-QRSVRSIFMDSQG-GMWLGTY 328 (795)
T ss_dssp SBEEEEEECTTSCEEEEESSCEEEEETTTTEEEEE--------CC--CTTST--TSCS-SSCEEEEEECTTS-CEEEEES
T ss_pred CeEEEEEEcCCCCEEEEeCChhheEcCCCCeEEEE--------ec--CCCCC--CCCC-CCcEEEEEEeCCc-CEEEEEC
Confidence 4688888874 499999988999999865322110 00 00001 1233 5689999999765 5899999
Q ss_pred CCcEEEEECCCCccCCCCCcceeEEec---c-cCCcEEEEEEecCCCEEEeeCCCcEEEEeCCCccceeecCCCceeeeE
Q 003171 212 DGRIMCWKMNARLLDSDDGFGEVLSWQ---A-HRGPVLSLCISSYGDLWSGSEGGGIKIWPWEAIEKALSLKPEERHTAA 287 (842)
Q Consensus 212 DGtIrlWdl~~g~~~~~~~~~~~~~l~---g-H~~~V~slafs~dG~L~SgS~DgtIrvWd~~t~~~~l~~~~~~~~~~~ 287 (842)
++-|..|+..++. +....... + ....|.+++.+++|.||.|+.++.|..|+..+... .......
T Consensus 329 ~~Gl~~~~~~~~~------~~~~~~~~~~~~l~~~~V~~i~~d~~g~lWiGt~~~Gl~~~~~~~~~~--~~~~~~~---- 396 (795)
T 4a2l_A 329 FGGLNYYHPIRNR------FKNIRNIPYKNSLSDNVVSCIVEDKDKNLWIGTNDGGLNLYNPITQRF--TSYTLQE---- 396 (795)
T ss_dssp SSCEEEECGGGGS------SEEECCCTTSSSCSCSSEEEEEECTTSCEEEEESSSCEEEECTTTCCE--EEECCC-----
T ss_pred CCCeEEeCCCccc------ceEEcCCCCCCCCCCCeeEEEEECCCCCEEEEECCCCeEEEcCCCCcE--EEEecCC----
Confidence 8888888865531 11111000 0 24579999999999999999999999999865321 1100000
Q ss_pred EEEeeceeecccceecccee-eeecCCEEEEEEcCCCCEEEEeCC-CcEEEEEccCCcEEEEeecCCceEeeeecccCCC
Q 003171 288 LIVERSYIDLRSHLSVNGFS-SILTSDIKNLLSDHSRAKVWSAGF-LSFALWDARTRELLKVFNIDGQIENRVDMSLLPD 365 (842)
Q Consensus 288 l~~~~s~~~l~~~~~~~~~~-~~~s~~v~~las~~~~~~v~s~s~-~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~ 365 (842)
.... .++...|.+++.+..+..||.++. +++.++|..++++.. +..... .++.
T Consensus 397 ----------------~~~~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~~~-~~~~~~-----~l~~--- 451 (795)
T 4a2l_A 397 ----------------DESARGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQVEN-FNQRNS-----QLVN--- 451 (795)
T ss_dssp ---------------------CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETTTCCEEE-ECTTTS-----CCSC---
T ss_pred ----------------CCcccCCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCcEEE-eecCCC-----CcCC---
Confidence 0000 112456778887766655999885 789999999987633 221100 0000
Q ss_pred cccccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEeec-Ccccc----------CCCceEEEEECCCCcEE
Q 003171 366 FAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAK-GGFGD----------DNRRTEALTTSIDGMIW 434 (842)
Q Consensus 366 ~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~-g~~~~----------~~~~v~al~~s~dg~l~ 434 (842)
..+. ++. .+.....|+|+..|+.++... +.+.. ....|.++..+++|.||
T Consensus 452 ----~~v~--------------~i~-~d~~g~lwigt~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lW 512 (795)
T 4a2l_A 452 ----ENVY--------------AIL-PDGEGNLWLGTLSALVRFNPEQRSFTTIEKEKDGTPVVSKQITTLFRDSHKRLW 512 (795)
T ss_dssp ----SCEE--------------EEE-ECSSSCEEEEESSCEEEEETTTTEEEECCBCTTCCBCCCCCEEEEEECTTCCEE
T ss_pred ----CeeE--------------EEE-ECCCCCEEEEecCceeEEeCCCCeEEEccccccccccCCceEEEEEECCCCCEE
Confidence 0000 000 111235677777788777642 22211 12568889999999999
Q ss_pred EEeCCCeEEEEcC-CCCeeeeee-------cCCccEEEEEecC-CEEEEEecCcEEEEEeCCCccccccc----ccccCE
Q 003171 435 TGGANGLLLQWDP-NGNRLQDFQ-------YLPFAVQCLCTFG-SQIWVGYMNGIVQVLDLEGNLLGGWV----AHSSPV 501 (842)
Q Consensus 435 Sgs~DgtIrlWD~-~g~~l~~l~-------~H~~~V~sls~dG-~~LasGs~DgtIrlWD~~g~~i~~l~----gH~~~V 501 (842)
.|+.+| |.+||. +++. .+. .+...|.++..|. ..||.|+.. .|..||.++.....+. ...+.|
T Consensus 513 igt~~G-l~~~~~~~~~~--~~~~~~~~~~l~~~~i~~i~~d~~g~lWigT~~-Gl~~~d~~~~~~~~~~~~~gl~~~~i 588 (795)
T 4a2l_A 513 IGGEEG-LSVFKQEGLDI--QKASILPVSNVTKLFTNCIYEASNGIIWVGTRE-GFYCFNEKDKQIKRYNTTNGLPNNVV 588 (795)
T ss_dssp EEESSC-EEEEEEETTEE--EECCCSCSCGGGGSCEEEEEECTTSCEEEEESS-CEEEEETTTTEEEEECGGGTCSCSCE
T ss_pred EEeCCc-eEEEeCCCCeE--EEecCCCCCCCCCCeeEEEEECCCCCEEEEeCC-CceeECCCCCcEEEeCCCCCCchhhe
Confidence 999855 889998 4443 332 2446799998864 368888876 7889998744322221 234579
Q ss_pred EEEEeCCCEEEEEcCCCCeeeccccC-----CCCCcchhhhhhcccccccccccceeEEEEEEE
Q 003171 502 IKMAVGAGYIFTLANHGGIRGWNVTS-----PGPLDSILCKELAGKEFLYTRMENLKILAGTWN 560 (842)
Q Consensus 502 ~sla~dg~~l~S~S~DgtIrvWd~~~-----~~~~d~~l~~~l~~r~~~y~~~~~~~i~~~twN 560 (842)
.++..|.+.-++.+++++|..|+..+ +...+++...++..........+. +++++-|
T Consensus 589 ~~i~~d~~g~lWi~t~~Gl~~~~~~~~~~~~~~~~dGl~~~~f~~~~~~~~~~G~--l~~g~~~ 650 (795)
T 4a2l_A 589 YGILEDSFGRLWLSTNRGISCFNPETEKFRNFTESDGLQSNQFNTASYCRTSVGQ--MYFGGIN 650 (795)
T ss_dssp EEEEECTTSCEEEEETTEEEEEETTTTEEEEECGGGTCSCSCEEEEEEEECTTSC--EEEEETT
T ss_pred EEEEECCCCCEEEEcCCceEEEcCCCCcEEEcCCcCCCccccCccCceeECCCCe--EEEecCC
Confidence 99988765555666678888888543 334455554444333333334444 7777754
|
| >3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A* | Back alignment and structure |
|---|
Probab=99.42 E-value=3.2e-11 Score=131.37 Aligned_cols=250 Identities=11% Similarity=0.050 Sum_probs=163.9
Q ss_pred CCCeEEEEEcCCCCEEEEEeCC------------------------CcEEEEECCCCccCCCCCcceeEEec-ccCCcEE
Q 003171 191 VSSVMCMVGDEASGVVWSGHRD------------------------GRIMCWKMNARLLDSDDGFGEVLSWQ-AHRGPVL 245 (842)
Q Consensus 191 ~~~V~~la~dpdg~~LaSGs~D------------------------GtIrlWdl~~g~~~~~~~~~~~~~l~-gH~~~V~ 245 (842)
-+.|.+|+++|+|+++++.+.+ ++|.+||..++ +....+. ++-....
T Consensus 23 l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g--------~~~~~~~~~~~~~p~ 94 (329)
T 3fvz_A 23 PGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNA--------EILQSSGKNLFYLPH 94 (329)
T ss_dssp CSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTC--------CEEEEECTTTCSSEE
T ss_pred cCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCC--------eEEeccCCCccCCce
Confidence 4579999999999999998888 57999999876 3344443 5567889
Q ss_pred EEEEecCCCEE-EeeCCCcEEEEeCCCcc-ceeecCCCceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcC-C
Q 003171 246 SLCISSYGDLW-SGSEGGGIKIWPWEAIE-KALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDH-S 322 (842)
Q Consensus 246 slafs~dG~L~-SgS~DgtIrvWd~~t~~-~~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~-~ 322 (842)
+|+++++|+|+ +.+.++.|++|+.++.. ....+..... .+...+ .-.....+++++ +
T Consensus 95 gia~d~~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~----------------~g~~~~----~~~~P~~ia~~~~~ 154 (329)
T 3fvz_A 95 GLSIDTDGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQ----------------PGSDQN----HFCQPTDVAVEPST 154 (329)
T ss_dssp EEEECTTSCEEEEETTTTEEEEECTTCSSCCSEEESBTTB----------------CCCSTT----CCSSEEEEEECTTT
T ss_pred EEEECCCCCEEEEECCCCEEEEEeCCCCeEEEEEecccCC----------------CCCCcc----ccCCCcEEEEeCCC
Confidence 99999999964 77778999999986532 1111100000 000000 012356788887 5
Q ss_pred CCEEEEeC--CCcEEEEEccCCcEEEEeecCCceEeeeecccCCCcccccceEEEEEecCCCCccceeeeEeecCcceEE
Q 003171 323 RAKVWSAG--FLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIM 400 (842)
Q Consensus 323 ~~~v~s~s--~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~ 400 (842)
+..+++.+ ...|++|| .+|+++..+...+.. ..
T Consensus 155 g~lyv~d~~~~~~I~~~~-~~g~~~~~~~~~g~~----------------------------~~---------------- 189 (329)
T 3fvz_A 155 GAVFVSDGYCNSRIVQFS-PSGKFVTQWGEESSG----------------------------SS---------------- 189 (329)
T ss_dssp CCEEEEECSSCCEEEEEC-TTSCEEEEECEECCS----------------------------SS----------------
T ss_pred CeEEEEeCCCCCeEEEEc-CCCCEEEEeccCCCC----------------------------CC----------------
Confidence 55555553 46799999 567766554321100 00
Q ss_pred ecCCcEEEEeecCccccCCCceEEEEECCC-CcEE-EEeCCCeEEEEcCC-CCeeeeee--cCCccEEEEEe--------
Q 003171 401 GAADAVRRVAAKGGFGDDNRRTEALTTSID-GMIW-TGGANGLLLQWDPN-GNRLQDFQ--YLPFAVQCLCT-------- 467 (842)
Q Consensus 401 g~~~~v~~v~~~g~~~~~~~~v~al~~s~d-g~l~-Sgs~DgtIrlWD~~-g~~l~~l~--~H~~~V~sls~-------- 467 (842)
....+......++++++ |.|+ +...++.|++||.+ |+.+.++. .+...+.++++
T Consensus 190 -------------~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~~~~~~~~~~~~pg~~~~~ 256 (329)
T 3fvz_A 190 -------------PRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHASFGRNVFAISYIPGFLFAV 256 (329)
T ss_dssp -------------CCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCTTTTTCEEEEEEETTEEEEE
T ss_pred -------------CCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEeccccCCCcceeeecCCEEEEe
Confidence 00001123456888888 7765 44568899999995 99988884 35556666644
Q ss_pred cCCEEEEEecCcEEEEEeCC-Ccccccc---cccccCEEEEEe--CCCEEEEEcCCCCeeecccc
Q 003171 468 FGSQIWVGYMNGIVQVLDLE-GNLLGGW---VAHSSPVIKMAV--GAGYIFTLANHGGIRGWNVT 526 (842)
Q Consensus 468 dG~~LasGs~DgtIrlWD~~-g~~i~~l---~gH~~~V~sla~--dg~~l~S~S~DgtIrvWd~~ 526 (842)
+|+..++.+.+.+|++||.. |+++.++ .+|...+.+|+. +|..+++.+.++.|++|++.
T Consensus 257 ~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~dG~lyvad~~~~~I~~~~~~ 321 (329)
T 3fvz_A 257 NGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVASEDGTVYIGDAHTNTVWKFTLT 321 (329)
T ss_dssp ECCCCTTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEEEECTTSEEEEEESSSCCEEEEEEE
T ss_pred CCCEEeccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEECCCCCEEEEECCCCEEEEEeCC
Confidence 33322233345699999976 7877776 477788999885 66677888899999999965
|
| >1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1 | Back alignment and structure |
|---|
Probab=99.39 E-value=6.4e-12 Score=138.85 Aligned_cols=238 Identities=9% Similarity=0.045 Sum_probs=147.8
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCcEEEEECC-CCccCCCCCcceeEEecccC--CcEEEEEEecCCC--E-EEee------
Q 003171 192 SSVMCMVGDEASGVVWSGHRDGRIMCWKMN-ARLLDSDDGFGEVLSWQAHR--GPVLSLCISSYGD--L-WSGS------ 259 (842)
Q Consensus 192 ~~V~~la~dpdg~~LaSGs~DGtIrlWdl~-~g~~~~~~~~~~~~~l~gH~--~~V~slafs~dG~--L-~SgS------ 259 (842)
..+..++++|+|++|++++.+ +|++|++. ++ +...... |. +.+.+++|+|||+ + ++++
T Consensus 40 ~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g--------~~~~~~~-~~~~g~~~~~~~spdg~~l~~~~~~~~~~~~ 109 (365)
T 1jof_A 40 EPISWMTFDHERKNIYGAAMK-KWSSFAVKSPT--------EIVHEAS-HPIGGHPRANDADTNTRAIFLLAAKQPPYAV 109 (365)
T ss_dssp CCCSEEEECTTSSEEEEEEBT-EEEEEEEEETT--------EEEEEEE-EECCSSGGGGCTTSCCEEEEEEECSSTTCCE
T ss_pred CCCcEEEECCCCCEEEEEccc-eEEEEEECCCC--------CEEEeeE-eecCCCCccEEECCCCCEEEEEEecCCccee
Confidence 357789999999999999998 99999987 55 3322221 21 2355689999998 3 4553
Q ss_pred -------CCCcEEEEeCCC-ccceeecCCCceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcCCCCEEEEeC-
Q 003171 260 -------EGGGIKIWPWEA-IEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG- 330 (842)
Q Consensus 260 -------~DgtIrvWd~~t-~~~~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s- 330 (842)
.++++++|++.. ++..... ..+ . + . ....+..+++++++..++++.
T Consensus 110 ~~~~~~~~~g~v~v~~~~~~g~~~~~~-------~~~-------~---~--~------~~~~~~~~~~spdG~~l~~~~~ 164 (365)
T 1jof_A 110 YANPFYKFAGYGNVFSVSETGKLEKNV-------QNY-------E---Y--Q------ENTGIHGMVFDPTETYLYSADL 164 (365)
T ss_dssp EEEEESSSCCEEEEEEECTTCCEEEEE-------EEE-------E---C--C------TTCCEEEEEECTTSSEEEEEET
T ss_pred ccceeecCCceEEEEccCCCCcCcceE-------eeE-------E---e--C------CCCcceEEEECCCCCEEEEEcC
Confidence 699999999863 2211000 000 0 0 0 023456778888888777654
Q ss_pred -CCcEEEEEcc-CCcEEEEeecCCceEeeeecccCCCcccccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEE
Q 003171 331 -FLSFALWDAR-TRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRR 408 (842)
Q Consensus 331 -~~tI~lWD~~-tg~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~ 408 (842)
.+.|++||+. +|++..... ..
T Consensus 165 ~~~~v~~~~~~~~g~~~~~~~---------------------------~~------------------------------ 187 (365)
T 1jof_A 165 TANKLWTHRKLASGEVELVGS---------------------------VD------------------------------ 187 (365)
T ss_dssp TTTEEEEEEECTTSCEEEEEE---------------------------EE------------------------------
T ss_pred CCCEEEEEEECCCCCEEEeee---------------------------Ee------------------------------
Confidence 4689999997 676421100 00
Q ss_pred EeecCccccCCCceEEEEECCCCc-EEEEeC-CCeEEEEcC---CCCee---eeee-------cCCc------cEEEEE-
Q 003171 409 VAAKGGFGDDNRRTEALTTSIDGM-IWTGGA-NGLLLQWDP---NGNRL---QDFQ-------YLPF------AVQCLC- 466 (842)
Q Consensus 409 v~~~g~~~~~~~~v~al~~s~dg~-l~Sgs~-DgtIrlWD~---~g~~l---~~l~-------~H~~------~V~sls- 466 (842)
+..+...+..++++|||+ +++++. +++|.+|+. +|+.. +.+. +|.. .+..++
T Consensus 188 ------~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~ 261 (365)
T 1jof_A 188 ------APDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCA 261 (365)
T ss_dssp ------CSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEE
T ss_pred ------cCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEE
Confidence 000112345688999997 666664 689999975 36542 2221 2232 465555
Q ss_pred --ecCCEEEEEecC-c-----EEEEEeCC--Ccccc---cccccccCEE--EEEe---CCCEEEEEcCC-CCeeeccccC
Q 003171 467 --TFGSQIWVGYMN-G-----IVQVLDLE--GNLLG---GWVAHSSPVI--KMAV---GAGYIFTLANH-GGIRGWNVTS 527 (842)
Q Consensus 467 --~dG~~LasGs~D-g-----tIrlWD~~--g~~i~---~l~gH~~~V~--sla~---dg~~l~S~S~D-gtIrvWd~~~ 527 (842)
+||++|+++..+ . +|++|+++ |++.. ....+...+. ++.+ ||++|++++.+ ++|++|++..
T Consensus 262 ~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~~~~a~sp~~~dg~~l~v~~~~~~~v~v~~~~~ 341 (365)
T 1jof_A 262 LTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKD 341 (365)
T ss_dssp ECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEET
T ss_pred ECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecCCCCcccceecCCCcCCCEEEEEEcCCCeEEEEEEch
Confidence 689999887653 2 89999984 55432 1222333333 3457 79999988865 8999999753
|
| >3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A | Back alignment and structure |
|---|
Probab=99.37 E-value=3.7e-10 Score=123.75 Aligned_cols=227 Identities=9% Similarity=0.077 Sum_probs=132.4
Q ss_pred CCeEEEEEcCCCCEEEEEe-CCCcEEEEECCCCccCCCCCcceeEEecc--------cCCcEEEEEEecCCC-EE-EeeC
Q 003171 192 SSVMCMVGDEASGVVWSGH-RDGRIMCWKMNARLLDSDDGFGEVLSWQA--------HRGPVLSLCISSYGD-LW-SGSE 260 (842)
Q Consensus 192 ~~V~~la~dpdg~~LaSGs-~DGtIrlWdl~~g~~~~~~~~~~~~~l~g--------H~~~V~slafs~dG~-L~-SgS~ 260 (842)
.....+++ ++++|++++ .+++|.+|++..... ...........+ +...+.+++|+|||+ |+ ++..
T Consensus 100 ~~p~~~~~--dg~~l~~~~~~~~~v~~~~~~~~g~--~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~ 175 (361)
T 3scy_A 100 ADPCYLTT--NGKNIVTANYSGGSITVFPIGQDGA--LLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLG 175 (361)
T ss_dssp SCEEEEEE--CSSEEEEEETTTTEEEEEEBCTTSC--BCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETT
T ss_pred CCcEEEEE--CCCEEEEEECCCCEEEEEEeCCCCc--CcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCC
Confidence 35566777 778777776 578999999975310 000011111111 233468999999998 65 5556
Q ss_pred CCcEEEEeCCCccc----e-eecCCCceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcCCCCEEEEeC--CCc
Q 003171 261 GGGIKIWPWEAIEK----A-LSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG--FLS 333 (842)
Q Consensus 261 DgtIrvWd~~t~~~----~-l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s--~~t 333 (842)
+++|++|+++.... . +.... ..... .+ ........+++++++..++.+. +++
T Consensus 176 ~~~v~v~~~~~~~~~~~~~~l~~~~---~~~~~-------~~-----------~~~~~~~~~~~spdg~~l~v~~~~~~~ 234 (361)
T 3scy_A 176 TDQIHKFNINPNANADNKEKFLTKG---TPEAF-------KV-----------APGSGPRHLIFNSDGKFAYLINEIGGT 234 (361)
T ss_dssp TTEEEEEEECTTCCTTTCCCCEEEE---EEEEE-------EC-----------CTTCCEEEEEECTTSSEEEEEETTTCE
T ss_pred CCEEEEEEEcCCCCcccccceeecc---cccce-------ec-----------CCCCCCeEEEEcCCCCEEEEEcCCCCe
Confidence 89999999865321 0 11000 00000 00 0012356688888888776655 568
Q ss_pred EEEEEccCCcEEEEeecCCceEeeeecccCCCcccccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEeecC
Q 003171 334 FALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKG 413 (842)
Q Consensus 334 I~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g 413 (842)
|.+||+.++++...... ..
T Consensus 235 v~v~~~~~g~~~~~~~~---------------------------~~---------------------------------- 253 (361)
T 3scy_A 235 VIAFRYADGMLDEIQTV---------------------------AA---------------------------------- 253 (361)
T ss_dssp EEEEEEETTEEEEEEEE---------------------------ES----------------------------------
T ss_pred EEEEEecCCceEEeEEE---------------------------ec----------------------------------
Confidence 99999987754211100 00
Q ss_pred ccccCCCceEEEEECCCCc-EEEEeC--CCeEEEEcCC---CC--eeeeeecCCccEEEE--EecCCEEEEEe-cCcEEE
Q 003171 414 GFGDDNRRTEALTTSIDGM-IWTGGA--NGLLLQWDPN---GN--RLQDFQYLPFAVQCL--CTFGSQIWVGY-MNGIVQ 482 (842)
Q Consensus 414 ~~~~~~~~v~al~~s~dg~-l~Sgs~--DgtIrlWD~~---g~--~l~~l~~H~~~V~sl--s~dG~~LasGs-~DgtIr 482 (842)
...+......++++|||+ |+++.. +++|.+|+++ |+ .+..+.. ...+.++ ++||++|++++ .+++|.
T Consensus 254 -~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~-g~~~~~~~~spdg~~l~~~~~~~~~v~ 331 (361)
T 3scy_A 254 -DTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQLT-GIHPRNFIITPNGKYLLVACRDTNVIQ 331 (361)
T ss_dssp -CSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEEC-SSCCCEEEECTTSCEEEEEETTTTEEE
T ss_pred -CCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEecC-CCCCceEEECCCCCEEEEEECCCCCEE
Confidence 001112235688999998 655554 4899999983 44 3444443 3445555 56899999888 579999
Q ss_pred EEe--CC-Ccccccc-cccccCEEEEEe
Q 003171 483 VLD--LE-GNLLGGW-VAHSSPVIKMAV 506 (842)
Q Consensus 483 lWD--~~-g~~i~~l-~gH~~~V~sla~ 506 (842)
+|+ .+ |++.... ..|...+.||.+
T Consensus 332 v~~~d~~~g~~~~~~~~~~~~~p~~v~~ 359 (361)
T 3scy_A 332 IFERDQATGLLTDIKKDIKVDKPVCLKF 359 (361)
T ss_dssp EEEECTTTCCEEECSCCEECSSEEEEEE
T ss_pred EEEEECCCCcEeecceeeeCCCCeEEEE
Confidence 964 44 5554332 345567777764
|
| >3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.33 E-value=1.6e-10 Score=123.19 Aligned_cols=222 Identities=14% Similarity=0.081 Sum_probs=139.7
Q ss_pred CCCeEEEEEcCCCC-EEEEEeCCCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCCCEEEee-CCCcEEEEe
Q 003171 191 VSSVMCMVGDEASG-VVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGDLWSGS-EGGGIKIWP 268 (842)
Q Consensus 191 ~~~V~~la~dpdg~-~LaSGs~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~L~SgS-~DgtIrvWd 268 (842)
.....+++++|+|+ ++|++..++.|..|+..+ . ...+..+.+.+.+|+++++|+||.+. .++.|.+||
T Consensus 27 ~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~---------~-~~~~~~~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d 96 (296)
T 3e5z_A 27 FTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDG---------Q-LSPEMHPSHHQNGHCLNKQGHLIACSHGLRRLERQR 96 (296)
T ss_dssp CSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTS---------C-EEEEESSCSSEEEEEECTTCCEEEEETTTTEEEEEC
T ss_pred CccccCCeEeCCCCEEEEEeCCCCEEEEEECCC---------C-eEEEECCCCCcceeeECCCCcEEEEecCCCeEEEEc
Confidence 34577899999998 899999999999999887 3 45566778889999999999977555 468999999
Q ss_pred CCCccceeecCCCceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcCCCCEEEEeCC-CcE-------------
Q 003171 269 WEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGF-LSF------------- 334 (842)
Q Consensus 269 ~~t~~~~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s~-~tI------------- 334 (842)
..+++........ .+ .....+..++.++++..+++... ++.
T Consensus 97 ~~~g~~~~~~~~~----------------------~~---~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~ 151 (296)
T 3e5z_A 97 EPGGEWESIADSF----------------------EG---KKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELP 151 (296)
T ss_dssp STTCCEEEEECEE----------------------TT---EECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSS
T ss_pred CCCCcEEEEeecc----------------------CC---CCCCCCCCEEECCCCCEEEECCccccccccccccccccCC
Confidence 8654321100000 00 00112334566665543332110 010
Q ss_pred --EEEEccC-CcEEEEeecCCceEeeeecccCCCcccccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEee
Q 003171 335 --ALWDART-RELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAA 411 (842)
Q Consensus 335 --~lWD~~t-g~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~ 411 (842)
.||.+.. +++ ..
T Consensus 152 ~~~l~~~~~~g~~--------------------------------------------------------------~~--- 166 (296)
T 3e5z_A 152 GRWVFRLAPDGTL--------------------------------------------------------------SA--- 166 (296)
T ss_dssp SCEEEEECTTSCE--------------------------------------------------------------EE---
T ss_pred CcEEEEECCCCCE--------------------------------------------------------------EE---
Confidence 1111100 110 00
Q ss_pred cCccccCCCceEEEEECCCCc-EEEEeCCCeEEEEcCC--CCe---eeeeecCCccEEEEEe--cCCEEEEEecCcEEEE
Q 003171 412 KGGFGDDNRRTEALTTSIDGM-IWTGGANGLLLQWDPN--GNR---LQDFQYLPFAVQCLCT--FGSQIWVGYMNGIVQV 483 (842)
Q Consensus 412 ~g~~~~~~~~v~al~~s~dg~-l~Sgs~DgtIrlWD~~--g~~---l~~l~~H~~~V~sls~--dG~~LasGs~DgtIrl 483 (842)
+..+......++++|||+ +++.+.++.|.+||+. |+. .+.+..+...+.+++. +|+ ||++. ++.|.+
T Consensus 167 ---~~~~~~~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G~-l~v~~-~~~v~~ 241 (296)
T 3e5z_A 167 ---PIRDRVKPNGLAFLPSGNLLVSDTGDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDAGGL-IWASA-GDGVHV 241 (296)
T ss_dssp ---EECCCSSEEEEEECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBTTSC-EEEEE-TTEEEE
T ss_pred ---eecCCCCCccEEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECCCCC-EEEEc-CCeEEE
Confidence 011223345688999998 5666677899999983 554 3344334445556665 465 66666 889999
Q ss_pred EeCCCcccccccccccCEEEEEe---CCCEEEEEcCCC
Q 003171 484 LDLEGNLLGGWVAHSSPVIKMAV---GAGYIFTLANHG 518 (842)
Q Consensus 484 WD~~g~~i~~l~gH~~~V~sla~---dg~~l~S~S~Dg 518 (842)
||.+|+.+..+..+.. +.++++ +++.|+.++.++
T Consensus 242 ~~~~g~~~~~~~~~~~-~~~~~f~~~d~~~L~v~t~~~ 278 (296)
T 3e5z_A 242 LTPDGDELGRVLTPQT-TSNLCFGGPEGRTLYMTVSTE 278 (296)
T ss_dssp ECTTSCEEEEEECSSC-CCEEEEESTTSCEEEEEETTE
T ss_pred ECCCCCEEEEEECCCC-ceeEEEECCCCCEEEEEcCCe
Confidence 9999988888888877 777765 556777777664
|
| >3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A | Back alignment and structure |
|---|
Probab=99.31 E-value=1.4e-10 Score=137.92 Aligned_cols=103 Identities=15% Similarity=0.014 Sum_probs=70.2
Q ss_pred eEEEEECCCCcE-EEEeCCC--eEEEEcC-CCCeeeeeecCCcc--------EEEEE--ecCCEEEEEecCcEEEEE--e
Q 003171 422 TEALTTSIDGMI-WTGGANG--LLLQWDP-NGNRLQDFQYLPFA--------VQCLC--TFGSQIWVGYMNGIVQVL--D 485 (842)
Q Consensus 422 v~al~~s~dg~l-~Sgs~Dg--tIrlWD~-~g~~l~~l~~H~~~--------V~sls--~dG~~LasGs~DgtIrlW--D 485 (842)
+..++++|||++ +++..++ .|.+||+ .|+..+...++... +.+++ ++|+.+++++. ++++|| |
T Consensus 244 ~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~d 322 (662)
T 3azo_A 244 IAQAEWAPDGSLIVATDRTGWWNLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGK-GAAVLGILD 322 (662)
T ss_dssp EEEEEECTTSCEEEEECTTSSCEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBS-SSCEEEEEE
T ss_pred EcceEECCCCeEEEEECCCCCeEEEEEECCCCceeecccccccccCccccccCceEeEeCCCEEEEEEEc-CccEEEEEE
Confidence 456778999985 5666677 6777787 45554433333222 34454 46889999888 999999 6
Q ss_pred CCCcccccccccccCEEEE-EeCCCEEE--EEcCCCCeeeccc
Q 003171 486 LEGNLLGGWVAHSSPVIKM-AVGAGYIF--TLANHGGIRGWNV 525 (842)
Q Consensus 486 ~~g~~i~~l~gH~~~V~sl-a~dg~~l~--S~S~DgtIrvWd~ 525 (842)
+++..++.+..|.+.|.++ +++++.++ +.+.+....+|.+
T Consensus 323 ~~~~~~~~l~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~i~~~ 365 (662)
T 3azo_A 323 PESGELVDAAGPWTEWAATLTVSGTRAVGVAASPRTAYEVVEL 365 (662)
T ss_dssp TTTTEEEECCSSCCEEEEEEEEETTEEEEEEEETTEEEEEEEE
T ss_pred CCCCcEEEecCCCCeEEEEEecCCCEEEEEEcCCCCCCEEEEE
Confidence 6655578888888888888 78777543 5566665666654
|
| >3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.31 E-value=1.9e-09 Score=131.49 Aligned_cols=355 Identities=15% Similarity=0.248 Sum_probs=212.1
Q ss_pred ceeEEEEecCC-EEEEecC-CCEEEEeCCCCccccccccccccCCCCCCCCCCeeeeeecCCCeEEEEEcCCCCEEEEEe
Q 003171 133 CFLRTIVCTEE-QLWAGGE-NGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGH 210 (842)
Q Consensus 133 ~~~~~l~~~~~-~l~~~~D-~~vrvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~V~~la~dpdg~~LaSGs 210 (842)
..+++|..+.+ .||+|++ ++|.++|..+....... .... .+.. ....+ ..+. ...|.++..|++| .||.|+
T Consensus 258 ~~i~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~~~~-~~~f-~~~~-~~~~~--~~l~-~~~v~~i~~D~~g-~lWigt 330 (781)
T 3v9f_A 258 SYIFSIKQLKDNKLWIATELNGIMILDLQQNQFLLPE-QIRF-EFIR-EGDNN--YSLS-NASARYIFQDSFN-NIWIGT 330 (781)
T ss_dssp CCEEEEEECTTSEEEEEESSSCEEEEETTCC----------C-EEEC-BCSST--TSBS-SSCEEEEEECSSC-CEEEEE
T ss_pred ceEEEEEECCCCCEEEEeCCCCeEEECCCCCeeeeee-cccc-cccc-CCCCC--CCCC-CCeEEEEEEeCCC-CEEEEe
Confidence 45788888755 9999988 89999998653211100 0000 0000 00000 1233 5689999999765 689999
Q ss_pred CCCcEEEEECCCCccCCCCCcceeEEe-------cccCCcEEEEEEecCCCEEEeeCCCcEEEEeCCCccceeecCCCce
Q 003171 211 RDGRIMCWKMNARLLDSDDGFGEVLSW-------QAHRGPVLSLCISSYGDLWSGSEGGGIKIWPWEAIEKALSLKPEER 283 (842)
Q Consensus 211 ~DGtIrlWdl~~g~~~~~~~~~~~~~l-------~gH~~~V~slafs~dG~L~SgS~DgtIrvWd~~t~~~~l~~~~~~~ 283 (842)
.++-|..++..++. +.....- .-....|.+++.+++|.||.|+.++.|.+|+..+.. +......
T Consensus 331 ~~~Gl~~~~~~~~~------~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lWigt~~~Gl~~~~~~~~~--~~~~~~~- 401 (781)
T 3v9f_A 331 WGGGINFISNAPPT------FHTWSYSPTQMNESSLSNKVVSSVCDDGQGKLWIGTDGGGINVFENGKRV--AIYNKEN- 401 (781)
T ss_dssp BSSCEEEECSSCCS------CEEEC----CCCSSCCSSSCEEEEEECTTSCEEEEEBSSCEEEEETTEEE--EECC----
T ss_pred cCCeEEEeCCCCCc------ceeeccCccccccCCCCCcceEEEEEcCCCCEEEEeCCCcEEEEECCCCe--EEEccCC-
Confidence 88888888876531 1111100 002357999999999999999988889999975421 1111000
Q ss_pred eeeEEEEeeceeecccceeccceeeeecCCEEEEEEcCCCCEEEEeCC-CcEEEEEccCCcEEEEeecCCceEeeeeccc
Q 003171 284 HTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGF-LSFALWDARTRELLKVFNIDGQIENRVDMSL 362 (842)
Q Consensus 284 ~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s~-~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~ 362 (842)
...+...|.+++.++ ...||.++. +++..+|..++++.. +.... ...
T Consensus 402 -----------------------~~~~~~~v~~i~~d~-~g~lWigt~~~Gl~~~~~~~~~~~~-~~~~~-------~~~ 449 (781)
T 3v9f_A 402 -----------------------RELLSNSVLCSLKDS-EGNLWFGTYLGNISYYNTRLKKFQI-IELEK-------NEL 449 (781)
T ss_dssp -------------------------CCCSBEEEEEECT-TSCEEEEETTEEEEEECSSSCEEEE-CCSTT-------TCC
T ss_pred -----------------------CCCCCcceEEEEECC-CCCEEEEeccCCEEEEcCCCCcEEE-eccCC-------CCC
Confidence 011234577777764 457898885 689999998876532 21100 000
Q ss_pred CCCcccccceEEEEEecCCCCccceeeeEe-ecCcceEEecCCcEEEEeec-Ccccc----C-----CCceEEEEECCCC
Q 003171 363 LPDFAMEDEFKTKIVTSSKKDKAQSSFGFF-QRSRNAIMGAADAVRRVAAK-GGFGD----D-----NRRTEALTTSIDG 431 (842)
Q Consensus 363 ~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~-~~~~~~~~g~~~~v~~v~~~-g~~~~----~-----~~~v~al~~s~dg 431 (842)
..+. .+. +.....|+|+..|+.++... +.+.. . ...|.++..+++|
T Consensus 450 -------~~v~----------------~i~~d~~g~lwigt~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g 506 (781)
T 3v9f_A 450 -------LDVR----------------VFYEDKNKKIWIGTHAGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDSEG 506 (781)
T ss_dssp -------CCEE----------------EEEECTTSEEEEEETTEEEEEESSSSSCCEEECTTTSSCSCSCEEEEEECTTC
T ss_pred -------CeEE----------------EEEECCCCCEEEEECCceEEEeCCCCeEEecccCcccccccceeEEEEEcCCC
Confidence 0000 011 11234677877788777642 22221 1 3568899999999
Q ss_pred cEEEEeCCCeEEEEcCCCCeeeeeec----CCccEEEEEecC-CEEEEEecCcEEEEEeCCCccccccc----ccccCEE
Q 003171 432 MIWTGGANGLLLQWDPNGNRLQDFQY----LPFAVQCLCTFG-SQIWVGYMNGIVQVLDLEGNLLGGWV----AHSSPVI 502 (842)
Q Consensus 432 ~l~Sgs~DgtIrlWD~~g~~l~~l~~----H~~~V~sls~dG-~~LasGs~DgtIrlWD~~g~~i~~l~----gH~~~V~ 502 (842)
.||.|+.++-|..+|..+..++.+.. ....|.++..|. ..||.|+.+|-|..||.++.....+. .....|.
T Consensus 507 ~lWigt~~~Gl~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi~T~~Glv~~~d~~~~~~~~~~~~~gl~~~~i~ 586 (781)
T 3v9f_A 507 RFWIGTFGGGVGIYTPDMQLVRKFNQYEGFCSNTINQIYRSSKGQMWLATGEGLVCFPSARNFDYQVFQRKEGLPNTHIR 586 (781)
T ss_dssp CEEEEESSSCEEEECTTCCEEEEECTTTTCSCSCEEEEEECTTSCEEEEETTEEEEESCTTTCCCEEECGGGTCSCCCCC
T ss_pred CEEEEEcCCCEEEEeCCCCeEEEccCCCCCCCCeeEEEEECCCCCEEEEECCCceEEECCCCCcEEEccccCCCCCceEE
Confidence 99999974448889996555555532 245789998864 37888888665499998744333322 2234688
Q ss_pred EEEeCCCEEEEEcCCCCeeeccccC-----CCCCcchhhhhhcccccccccccceeEEEEEEE
Q 003171 503 KMAVGAGYIFTLANHGGIRGWNVTS-----PGPLDSILCKELAGKEFLYTRMENLKILAGTWN 560 (842)
Q Consensus 503 sla~dg~~l~S~S~DgtIrvWd~~~-----~~~~d~~l~~~l~~r~~~y~~~~~~~i~~~twN 560 (842)
++..|.+..++.+++++|..++... +...+++...++..........+. +++++-|
T Consensus 587 ~i~~d~~g~lW~~t~~Gl~~~~~~~~~~~~~~~~dGl~~~~f~~~~~~~~~~G~--l~~g~~~ 647 (781)
T 3v9f_A 587 AISEDKNGNIWASTNTGISCYITSKKCFYTYDHSNNIPQGSFISGCVTKDHNGL--IYFGSIN 647 (781)
T ss_dssp EEEECSSSCEEEECSSCEEEEETTTTEEEEECGGGTCCSSCEEEEEEEECTTSC--EEEEETT
T ss_pred EEEECCCCCEEEEcCCceEEEECCCCceEEecccCCccccccccCceEECCCCE--EEEECCC
Confidence 8887765556666677788887543 334455555555444343334444 7777754
|
| >3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A | Back alignment and structure |
|---|
Probab=99.30 E-value=1.3e-11 Score=144.96 Aligned_cols=102 Identities=11% Similarity=-0.092 Sum_probs=81.2
Q ss_pred EEEEECCCCc-EEEEeCC----CeEEEEcCCCCeeeeeecCCccEEEE--EecCCEEEEEecCc--EEEEEeCC-Ccccc
Q 003171 423 EALTTSIDGM-IWTGGAN----GLLLQWDPNGNRLQDFQYLPFAVQCL--CTFGSQIWVGYMNG--IVQVLDLE-GNLLG 492 (842)
Q Consensus 423 ~al~~s~dg~-l~Sgs~D----gtIrlWD~~g~~l~~l~~H~~~V~sl--s~dG~~LasGs~Dg--tIrlWD~~-g~~i~ 492 (842)
.++++||||+ |++++.| ++|++||+++..++.+..|...+.++ ++||++|+++..++ .|++||++ +++.
T Consensus 153 ~~~~~spDG~~la~~~~~~~~~~~i~~~d~~~g~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~- 231 (582)
T 3o4h_A 153 FGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGLRVFDSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVE- 231 (582)
T ss_dssp CEEEEEEETTEEEEEEEEETTEEEEEEEETTTCCCEEECCSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEE-
T ss_pred ceEEECCCCCEEEEEEEcCCCCeEEEEEcCCCCCceEeecCCCccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEE-
Confidence 5788999998 6667666 78999999544455778888888876 46899999888888 99999998 4555
Q ss_pred cccccccCEEE----------EEeCCCEEEEEcCCCCeeeccc
Q 003171 493 GWVAHSSPVIK----------MAVGAGYIFTLANHGGIRGWNV 525 (842)
Q Consensus 493 ~l~gH~~~V~s----------la~dg~~l~S~S~DgtIrvWd~ 525 (842)
.+.+|...|.+ .++||..+++++.|+++++|++
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~ 274 (582)
T 3o4h_A 232 DLELPSKDFSSYRPTAITWLGYLPDGRLAVVARREGRSAVFID 274 (582)
T ss_dssp ECCCSCSHHHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEET
T ss_pred EccCCCcChhhhhhccccceeEcCCCcEEEEEEcCCcEEEEEE
Confidence 77778766543 3458888899999999999997
|
| >4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ... | Back alignment and structure |
|---|
Probab=99.30 E-value=1.1e-10 Score=141.69 Aligned_cols=287 Identities=9% Similarity=0.003 Sum_probs=165.3
Q ss_pred CeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEecccCCc-----EEEEEEecCCC-EEEeeCC-----
Q 003171 193 SVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGP-----VLSLCISSYGD-LWSGSEG----- 261 (842)
Q Consensus 193 ~V~~la~dpdg~~LaSGs~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~-----V~slafs~dG~-L~SgS~D----- 261 (842)
...+++|+|||++|+++ ||+|++||+.++ ++...+.+|... ..+++|||||+ |++++.+
T Consensus 18 ~~~~~~w~~dg~~~~~~--~~~i~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r 87 (740)
T 4a5s_A 18 KLYSLRWISDHEYLYKQ--ENNILVFNAEYG--------NSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWR 87 (740)
T ss_dssp CCCCEEECSSSEEEEEE--TTEEEEEETTTC--------CEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSS
T ss_pred cccccEECCCCcEEEEc--CCcEEEEECCCC--------ceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEE
Confidence 35578999999999997 999999999997 455667777643 34578999998 7777776
Q ss_pred ----CcEEEEeCCCccceeecCCCceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcCCCCEEEEeCCCcEEEE
Q 003171 262 ----GGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGFLSFALW 337 (842)
Q Consensus 262 ----gtIrvWd~~t~~~~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s~~tI~lW 337 (842)
+.+.+||+.+++.. .+.. + ...+...+.+++|.+|+.+.+..|.+|
T Consensus 88 ~~~~~~~~~~d~~~~~~~-~l~~-------------------~----------~~~~~~~~~SPdG~~la~~~~~~i~~~ 137 (740)
T 4a5s_A 88 HSYTASYDIYDLNKRQLI-TEER-------------------I----------PNNTQWVTWSPVGHKLAYVWNNDIYVK 137 (740)
T ss_dssp SCEEEEEEEEETTTTEEC-CSSC-------------------C----------CTTEEEEEECSSTTCEEEEETTEEEEE
T ss_pred EccceEEEEEECCCCcEE-Eccc-------------------C----------CCcceeeEECCCCCEEEEEECCeEEEE
Confidence 45569999875421 1111 0 224566778899998888888899999
Q ss_pred EccCCcEEEEeecCCc---eEe----------------eeecccCCCccc----ccc-eEEEEEecCCCC----ccceee
Q 003171 338 DARTRELLKVFNIDGQ---IEN----------------RVDMSLLPDFAM----EDE-FKTKIVTSSKKD----KAQSSF 389 (842)
Q Consensus 338 D~~tg~~l~~l~~~~~---~~~----------------~~~~s~~~~~~~----~~~-~~~~~~s~~~~~----~~~~s~ 389 (842)
|+.+++..+ +..++. +.+ .+.++++....+ ++. ++.+........ .....+
T Consensus 138 ~~~~~~~~~-lt~~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~ 216 (740)
T 4a5s_A 138 IEPNLPSYR-ITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRV 216 (740)
T ss_dssp SSTTSCCEE-CCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEE
T ss_pred ECCCCceEE-EcCCCCccceecCcccccccchhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceee
Confidence 999988644 222221 100 122333322211 100 111000000000 000001
Q ss_pred eEeecCcceEEecCCc---EEEEeec----C---c---cc------cCCCceEEEEECCCCcE-EEEe----CCCeEEEE
Q 003171 390 GFFQRSRNAIMGAADA---VRRVAAK----G---G---FG------DDNRRTEALTTSIDGMI-WTGG----ANGLLLQW 445 (842)
Q Consensus 390 ~~~~~~~~~~~g~~~~---v~~v~~~----g---~---~~------~~~~~v~al~~s~dg~l-~Sgs----~DgtIrlW 445 (842)
.+.. .|..+. +..+... + . +. .+...+..+++||||++ +... .+..|++|
T Consensus 217 ~yp~------~G~~~~~~~l~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~ 290 (740)
T 4a5s_A 217 PYPK------AGAVNPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDIC 290 (740)
T ss_dssp ECCB------TTSCCCEEEEEEEETTSCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEE
T ss_pred cCCC------CcCcCCeeEEEEEECCCCCCCCcceEEEecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEE
Confidence 1111 011111 1111111 1 0 11 25556788999999984 3332 23479999
Q ss_pred cC-CCC----eee--ee--ecCCccEE-------EEEecCCEEE-EEec-C--cEEEEEeCCCcccccccccccCEEEEE
Q 003171 446 DP-NGN----RLQ--DF--QYLPFAVQ-------CLCTFGSQIW-VGYM-N--GIVQVLDLEGNLLGGWVAHSSPVIKMA 505 (842)
Q Consensus 446 D~-~g~----~l~--~l--~~H~~~V~-------sls~dG~~La-sGs~-D--gtIrlWD~~g~~i~~l~gH~~~V~sla 505 (842)
|+ +|+ |.. ++ .+|..+|. .+++||+.|+ ..+. + ..|.+||++|.....++.....|..+.
T Consensus 291 d~~tg~~~~~~~~~~~l~~~~~~~~v~~~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~~~~~~~~~~lT~g~~~v~~~~ 370 (740)
T 4a5s_A 291 DYDESSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKKDCTFITKGTWEVIGIE 370 (740)
T ss_dssp EEETTTTEEEECGGGCEEEECSSSCSSSSSCCCCEECTTSSEEEEEEECTTSCEEEEEEETTCSSCEESCCSSSCEEEEE
T ss_pred ECCCCccccceeEEEEeeeccCCceEccCcCCCceEcCCCCEEEEEEEcCCCceEEEEEECCCCceEecccCCEEEEEEE
Confidence 99 677 443 22 45666554 3567999776 6654 3 578999998765555555556676654
Q ss_pred -eCCCEEE-EEcC----CCCeeecccc
Q 003171 506 -VGAGYIF-TLAN----HGGIRGWNVT 526 (842)
Q Consensus 506 -~dg~~l~-S~S~----DgtIrvWd~~ 526 (842)
+|++.++ +++. -+...+|.+.
T Consensus 371 ~~d~~~i~f~~~~~~~~~~~~~ly~v~ 397 (740)
T 4a5s_A 371 ALTSDYLYYISNEYKGMPGGRNLYKIQ 397 (740)
T ss_dssp EECSSEEEEEESCGGGCTTCBEEEEEE
T ss_pred EEeCCEEEEEEecCCCCCceeEEEEEE
Confidence 7777666 4443 2445666654
|
| >1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1 | Back alignment and structure |
|---|
Probab=99.29 E-value=1.3e-10 Score=128.20 Aligned_cols=240 Identities=7% Similarity=0.015 Sum_probs=141.2
Q ss_pred cCCEEEEecCCCEEEEeCC-CCccccccccccccCCCCCCCCCCeeeeeecCCCeEEEEEcCCCC--EEEEEe-------
Q 003171 141 TEEQLWAGGENGLRVWNLK-ELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASG--VVWSGH------- 210 (842)
Q Consensus 141 ~~~~l~~~~D~~vrvWdl~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~V~~la~dpdg~--~LaSGs------- 210 (842)
+++.|+++..++|++|++. ++..... ..... .+.+.+++++|+|+ ++++++
T Consensus 50 dg~~l~~~~~~~v~~~~~~~~g~~~~~-----------------~~~~~--~g~~~~~~~spdg~~l~~~~~~~~~~~~~ 110 (365)
T 1jof_A 50 ERKNIYGAAMKKWSSFAVKSPTEIVHE-----------------ASHPI--GGHPRANDADTNTRAIFLLAAKQPPYAVY 110 (365)
T ss_dssp TSSEEEEEEBTEEEEEEEEETTEEEEE-----------------EEEEC--CSSGGGGCTTSCCEEEEEEECSSTTCCEE
T ss_pred CCCEEEEEccceEEEEEECCCCCEEEe-----------------eEeec--CCCCccEEECCCCCEEEEEEecCCcceec
Confidence 4556777554499999986 4321100 00001 12345688999999 466664
Q ss_pred ------CCCcEEEEECCC-CccCCCCCcceeEEec----ccCCcEEEEEEecCCC-EEEee-CCCcEEEEeCC-Ccccee
Q 003171 211 ------RDGRIMCWKMNA-RLLDSDDGFGEVLSWQ----AHRGPVLSLCISSYGD-LWSGS-EGGGIKIWPWE-AIEKAL 276 (842)
Q Consensus 211 ------~DGtIrlWdl~~-g~~~~~~~~~~~~~l~----gH~~~V~slafs~dG~-L~SgS-~DgtIrvWd~~-t~~~~l 276 (842)
.+|++++|++.. + +....+. .|...+.+++|+|||+ |+++. .+++|++|+++ +++...
T Consensus 111 ~~~~~~~~g~v~v~~~~~~g--------~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~ 182 (365)
T 1jof_A 111 ANPFYKFAGYGNVFSVSETG--------KLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVEL 182 (365)
T ss_dssp EEEESSSCCEEEEEEECTTC--------CEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEE
T ss_pred cceeecCCceEEEEccCCCC--------cCcceEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEE
Confidence 699999999974 3 2222222 2567899999999998 66554 46899999996 432110
Q ss_pred ecCCCceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcCCCCEEEEeC--CCcEEEEEcc--CCcEEEEeecCC
Q 003171 277 SLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG--FLSFALWDAR--TRELLKVFNIDG 352 (842)
Q Consensus 277 ~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s--~~tI~lWD~~--tg~~l~~l~~~~ 352 (842)
...+ .... +....+.+++++++..++.+. +++|.+|+.. +|++...+..
T Consensus 183 --------~~~~-------~~~~----------~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~-- 235 (365)
T 1jof_A 183 --------VGSV-------DAPD----------PGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHS-- 235 (365)
T ss_dssp --------EEEE-------ECSS----------TTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEE--
T ss_pred --------eeeE-------ecCC----------CCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccce--
Confidence 0000 0000 012356788888888887765 3678998764 5654211100
Q ss_pred ceEeeeecccCCCcccccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEeecCccccCC------CceEEEE
Q 003171 353 QIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDN------RRTEALT 426 (842)
Q Consensus 353 ~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~------~~v~al~ 426 (842)
+.... . .+.++. ..+..++
T Consensus 236 ------------------------~~~~~-~------------------------------~~~g~~~~~~~~~~~~~i~ 260 (365)
T 1jof_A 236 ------------------------FPLIP-P------------------------------GIPDRDPETGKGLYRADVC 260 (365)
T ss_dssp ------------------------EESSC-T------------------------------TCCCBCTTTSSBSEEEEEE
T ss_pred ------------------------EEcCC-C------------------------------CcCCcccccccccccccEE
Confidence 00000 0 000011 1356788
Q ss_pred -ECCCCc-EEEEeC-CC-----eEEEEcC--CCCeee---eeecCCccEE--EEEe---cCCEEEEEec-CcEEEEEeCC
Q 003171 427 -TSIDGM-IWTGGA-NG-----LLLQWDP--NGNRLQ---DFQYLPFAVQ--CLCT---FGSQIWVGYM-NGIVQVLDLE 487 (842)
Q Consensus 427 -~s~dg~-l~Sgs~-Dg-----tIrlWD~--~g~~l~---~l~~H~~~V~--sls~---dG~~LasGs~-DgtIrlWD~~ 487 (842)
++|||+ |+++.. ++ +|++|++ +|+... .+..+...+. ++++ ||++|++++. +++|+||+++
T Consensus 261 ~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~~~~a~sp~~~dg~~l~v~~~~~~~v~v~~~~ 340 (365)
T 1jof_A 261 ALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWK 340 (365)
T ss_dssp EECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEE
T ss_pred EECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecCCCCcccceecCCCcCCCEEEEEEcCCCeEEEEEEc
Confidence 999997 665553 23 8999998 355433 1222332223 4678 8999999886 4899999987
Q ss_pred Cc
Q 003171 488 GN 489 (842)
Q Consensus 488 g~ 489 (842)
++
T Consensus 341 ~~ 342 (365)
T 1jof_A 341 DE 342 (365)
T ss_dssp TT
T ss_pred hh
Confidence 54
|
| >3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A* | Back alignment and structure |
|---|
Probab=99.28 E-value=7.7e-10 Score=120.38 Aligned_cols=206 Identities=11% Similarity=-0.024 Sum_probs=130.6
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEe---------cccCCcEEEEEEec-CCCEE-Eee-
Q 003171 192 SSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSW---------QAHRGPVLSLCISS-YGDLW-SGS- 259 (842)
Q Consensus 192 ~~V~~la~dpdg~~LaSGs~DGtIrlWdl~~g~~~~~~~~~~~~~l---------~gH~~~V~slafs~-dG~L~-SgS- 259 (842)
.....++++|+|+++++.+.+++|++|+.++.. ..+..+ .+|-....+|+|+| +|.|+ +.+
T Consensus 91 ~~p~gia~d~~g~l~v~d~~~~~v~~~~~~g~~-------~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~ 163 (329)
T 3fvz_A 91 YLPHGLSIDTDGNYWVTDVALHQVFKLDPHSKE-------GPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGY 163 (329)
T ss_dssp SSEEEEEECTTSCEEEEETTTTEEEEECTTCSS-------CCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECS
T ss_pred CCceEEEECCCCCEEEEECCCCEEEEEeCCCCe-------EEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCC
Confidence 467889999999999999999999999987631 134444 35566789999999 78865 565
Q ss_pred CCCcEEEEeCCCccceeecCCCceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcCCCCEEEEeC--CCcEEEE
Q 003171 260 EGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG--FLSFALW 337 (842)
Q Consensus 260 ~DgtIrvWd~~t~~~~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s--~~tI~lW 337 (842)
.++.|++|+.+. .....+.. .+.........-.....+++++++..|+.+. ...|++|
T Consensus 164 ~~~~I~~~~~~g-~~~~~~~~-------------------~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~ 223 (329)
T 3fvz_A 164 CNSRIVQFSPSG-KFVTQWGE-------------------ESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCF 223 (329)
T ss_dssp SCCEEEEECTTS-CEEEEECE-------------------ECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEE
T ss_pred CCCeEEEEcCCC-CEEEEecc-------------------CCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEE
Confidence 589999999643 21111100 0000000000012346678887755555554 3579999
Q ss_pred EccCCcEEEEeecCCceEeeeecccCCCcccccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEeecCcccc
Q 003171 338 DARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGD 417 (842)
Q Consensus 338 D~~tg~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~ 417 (842)
|..+|+++.++......
T Consensus 224 ~~~~G~~~~~~~~~~~~--------------------------------------------------------------- 240 (329)
T 3fvz_A 224 KTDTKEFVREIKHASFG--------------------------------------------------------------- 240 (329)
T ss_dssp ETTTCCEEEEECCTTTT---------------------------------------------------------------
T ss_pred ECCCCcEEEEEeccccC---------------------------------------------------------------
Confidence 99999987766421100
Q ss_pred CCCceEEEEECC------CCcE-EEEeCCCeEEEEcC-CCCeeeeee---cCCccEEEEEe--cCCEEEEEecCcEEEEE
Q 003171 418 DNRRTEALTTSI------DGMI-WTGGANGLLLQWDP-NGNRLQDFQ---YLPFAVQCLCT--FGSQIWVGYMNGIVQVL 484 (842)
Q Consensus 418 ~~~~v~al~~s~------dg~l-~Sgs~DgtIrlWD~-~g~~l~~l~---~H~~~V~sls~--dG~~LasGs~DgtIrlW 484 (842)
..+.+++++| +|.+ ++.+.+.+|++||. +|+.+.++. ++...+..|++ +|..+++...+++|++|
T Consensus 241 --~~~~~~~~~pg~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~dG~lyvad~~~~~I~~~ 318 (329)
T 3fvz_A 241 --RNVFAISYIPGFLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVASEDGTVYIGDAHTNTVWKF 318 (329)
T ss_dssp --TCEEEEEEETTEEEEEECCCCTTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEEEECTTSEEEEEESSSCCEEEE
T ss_pred --CCcceeeecCCEEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEECCCCCEEEEECCCCEEEEE
Confidence 0011112222 3332 23344668999998 799888873 56677888876 57566666678999999
Q ss_pred eCCCc
Q 003171 485 DLEGN 489 (842)
Q Consensus 485 D~~g~ 489 (842)
+++++
T Consensus 319 ~~~~~ 323 (329)
T 3fvz_A 319 TLTEK 323 (329)
T ss_dssp EEEEC
T ss_pred eCCcc
Confidence 98754
|
| >2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ... | Back alignment and structure |
|---|
Probab=99.26 E-value=7.5e-10 Score=122.55 Aligned_cols=79 Identities=10% Similarity=0.019 Sum_probs=59.0
Q ss_pred EEECCCCc-EEEEeC-----------CCeEEEEcC-CCCeeeeeecCCccEEEE--EecCCEEEEEecCcEEEEEeCC-C
Q 003171 425 LTTSIDGM-IWTGGA-----------NGLLLQWDP-NGNRLQDFQYLPFAVQCL--CTFGSQIWVGYMNGIVQVLDLE-G 488 (842)
Q Consensus 425 l~~s~dg~-l~Sgs~-----------DgtIrlWD~-~g~~l~~l~~H~~~V~sl--s~dG~~LasGs~DgtIrlWD~~-g 488 (842)
+++++|+. ++.+.. .++|.+||+ +++.++++..+. +.++ ++||++|+++.. ++|.+||++ +
T Consensus 259 ~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~~--p~~ia~spdg~~l~v~n~-~~v~v~D~~t~ 335 (361)
T 2oiz_A 259 VGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPGRD--ALSMTIDQQRNLMLTLDG-GNVNVYDISQP 335 (361)
T ss_dssp EEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEECTT--CCEEEEETTTTEEEEECS-SCEEEEECSSS
T ss_pred EEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEecCC--eeEEEECCCCCEEEEeCC-CeEEEEECCCC
Confidence 67888865 655432 348999999 789999988776 5655 568999998886 999999987 7
Q ss_pred --cccccccccccCEEEEEe
Q 003171 489 --NLLGGWVAHSSPVIKMAV 506 (842)
Q Consensus 489 --~~i~~l~gH~~~V~sla~ 506 (842)
+.++++..+......++.
T Consensus 336 ~l~~~~~i~~~G~~P~~~~~ 355 (361)
T 2oiz_A 336 EPKLLRTIEGAAEASLQVQF 355 (361)
T ss_dssp SCEEEEEETTSCSSEEEEEE
T ss_pred cceeeEEeccCCCCcEEEEe
Confidence 777776555555566553
|
| >3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=99.26 E-value=3e-10 Score=125.07 Aligned_cols=288 Identities=10% Similarity=-0.022 Sum_probs=146.8
Q ss_pred eEEEEEcCCCCEEEEEeCC-C--cEEEEECCCCccCCCCCcceeEEecccCCc-EEEEEEecCCC-EEEeeCCCcEEEEe
Q 003171 194 VMCMVGDEASGVVWSGHRD-G--RIMCWKMNARLLDSDDGFGEVLSWQAHRGP-VLSLCISSYGD-LWSGSEGGGIKIWP 268 (842)
Q Consensus 194 V~~la~dpdg~~LaSGs~D-G--tIrlWdl~~g~~~~~~~~~~~~~l~gH~~~-V~slafs~dG~-L~SgS~DgtIrvWd 268 (842)
+.+++++|||+.|+....+ | .|.+|++.++ + ...+..+... +..++|||||+ |+.++.++.|.+||
T Consensus 38 ~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~--------~-~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d 108 (396)
T 3c5m_A 38 FYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQ--------Q-AVQLTEGKGDNTFGGFISTDERAFFYVKNELNLMKVD 108 (396)
T ss_dssp TTSCCBCTTSCEEEEEECTTSSCEEEEEETTTT--------E-EEECCCSSCBCTTTCEECTTSSEEEEEETTTEEEEEE
T ss_pred eecCcCCCCCCEEEEEEecCCCceEEEEECCCC--------c-EEEeecCCCCccccceECCCCCEEEEEEcCCcEEEEE
Confidence 5567899999998776543 3 6788898886 3 3334333333 33478999998 77888889999999
Q ss_pred CCCccceeecCCCceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcCCCCEEEEe------CCCcEEEEEccCC
Q 003171 269 WEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSA------GFLSFALWDARTR 342 (842)
Q Consensus 269 ~~t~~~~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~------s~~tI~lWD~~tg 342 (842)
+.+++............. ....+.......... .. ......++++..++.. ....|.+||+.++
T Consensus 109 ~~~~~~~~~~~~~~~~~~----~g~~l~~~~~~~~~~---~~---~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g 178 (396)
T 3c5m_A 109 LETLEEQVIYTVDEEWKG----YGTWVANSDCTKLVG---IE---ILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIETG 178 (396)
T ss_dssp TTTCCEEEEEECCTTEEE----EEEEEECTTSSEEEE---EE---EEGGGCCCCCSHHHHHHHHHTCCCEEEEEEETTTC
T ss_pred CCCCCcEEEEecccccCC----CCCEEEeccCCcccc---cc---ccccccCCCCcceeeeeeccCCCcceEEEEECCCC
Confidence 977543221111110000 000000000000000 00 0000112233322221 2347899999999
Q ss_pred cEEEEeecCCceEeeeeccc-CCCcccccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEeecC----cccc
Q 003171 343 ELLKVFNIDGQIENRVDMSL-LPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKG----GFGD 417 (842)
Q Consensus 343 ~~l~~l~~~~~~~~~~~~s~-~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g----~~~~ 417 (842)
+.......... ...+.+++ ... ++........... ...++.+...+ .+..
T Consensus 179 ~~~~~~~~~~~-~~~~~~sp~dg~-------~l~~~~~~~~~~~-----------------~~~l~~~d~~~~~~~~l~~ 233 (396)
T 3c5m_A 179 ELEVIHQDTAW-LGHPIYRPFDDS-------TVGFCHEGPHDLV-----------------DARMWLVNEDGSNVRKIKE 233 (396)
T ss_dssp CEEEEEEESSC-EEEEEEETTEEE-------EEEEEECSCSSSC-----------------SCCCEEEETTSCCCEESSC
T ss_pred cEEeeccCCcc-cccceECCCCCC-------EEEEEecCCCCCC-----------------CceEEEEECCCCceeEeec
Confidence 87655432221 12222222 110 1111111000000 00122222111 1112
Q ss_pred C--CCceEEEEECCCCc-EEEEeCC-----CeEEEEcC-CCCeeeeeecCCccEEEEEe-cCCEEEEEe-----------
Q 003171 418 D--NRRTEALTTSIDGM-IWTGGAN-----GLLLQWDP-NGNRLQDFQYLPFAVQCLCT-FGSQIWVGY----------- 476 (842)
Q Consensus 418 ~--~~~v~al~~s~dg~-l~Sgs~D-----gtIrlWD~-~g~~l~~l~~H~~~V~sls~-dG~~LasGs----------- 476 (842)
+ ...+..++++|||+ |+.++.+ +.|.+||+ +|+........ .....+++ ||++|++++
T Consensus 234 ~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~-~~~~~~s~~dg~~l~~~~~~~p~~~~~~~ 312 (396)
T 3c5m_A 234 HAEGESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPETLENEEVMVMP-PCSHLMSNFDGSLMVGDGCDAPVDVADAD 312 (396)
T ss_dssp CCTTEEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTTCCEEEEEECC-SEEEEEECSSSSEEEEEECCC--------
T ss_pred cCCCccccceEECCCCCEEEEEecCCCCccceEEEEECCCCCeEEeeeCC-CCCCCccCCCCceEEEecCCcceeecccc
Confidence 1 22466789999997 6666543 45999999 56543322111 11145677 999888754
Q ss_pred -----cCcEEEEEeCCCcccccccccccC-----------EE--EEEeCCCEEEEEc-CCCCeeecccc
Q 003171 477 -----MNGIVQVLDLEGNLLGGWVAHSSP-----------VI--KMAVGAGYIFTLA-NHGGIRGWNVT 526 (842)
Q Consensus 477 -----~DgtIrlWD~~g~~i~~l~gH~~~-----------V~--sla~dg~~l~S~S-~DgtIrvWd~~ 526 (842)
.+..|.+||+++..+..+..|... +. ++.+||+.|+.++ .++...+|.+.
T Consensus 313 ~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~s~~~~~~~l~~~~ 381 (396)
T 3c5m_A 313 SYNIENDPFLYVLNTKAKSAQKLCKHSTSWDVLDGDRQITHPHPSFTPNDDGVLFTSDFEGVPAIYIAD 381 (396)
T ss_dssp --CCCCCCEEEEEETTTTBCCEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEEE
T ss_pred ccccCCCCcEEEEecccCceEEccCCCCccccccccccCCCCCceEccCCCeEEEEecCCCCceEEEEE
Confidence 247899999985444556666542 33 3346888887665 46677777754
|
| >2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ... | Back alignment and structure |
|---|
Probab=99.23 E-value=5.5e-10 Score=123.61 Aligned_cols=259 Identities=10% Similarity=0.085 Sum_probs=146.4
Q ss_pred CCCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCCC-EEEee----------CCCcEEEEeCCCccceeecC
Q 003171 211 RDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGS----------EGGGIKIWPWEAIEKALSLK 279 (842)
Q Consensus 211 ~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS----------~DgtIrvWd~~t~~~~l~~~ 279 (842)
.|++|.+||..++ +.+.++..+..+ .++|+|||+ |++++ .|++|.+||..+.+..-++.
T Consensus 29 ~d~~v~v~D~~t~--------~~~~~i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~ 98 (361)
T 2oiz_A 29 TESRVHVYDYTNG--------KFLGMVPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEIS 98 (361)
T ss_dssp GGCEEEEEETTTC--------CEEEEEECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEE
T ss_pred ccCeEEEEECCCC--------eEEEEecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEE
Confidence 4789999999887 556667777666 899999998 66654 36789999987643221111
Q ss_pred CCceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcCCCCEEEEeC---CCcEEEEEccCCcEEEE-eecCCceE
Q 003171 280 PEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG---FLSFALWDARTRELLKV-FNIDGQIE 355 (842)
Q Consensus 280 ~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s---~~tI~lWD~~tg~~l~~-l~~~~~~~ 355 (842)
.... + ... ......+++++++..|+.+. +++|.+||+.+++.+.. +...+...
T Consensus 99 ~~~~----------------~-~~~------g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~~~~~~ 155 (361)
T 2oiz_A 99 LPPK----------------R-VQG------LNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVEDVTAAAGCWS 155 (361)
T ss_dssp ECTT----------------B-CCB------CCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEEEGGGTTEEE
T ss_pred cCcc----------------c-ccc------CCCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEEEecCCCcce
Confidence 0000 0 000 01123466778888887764 36899999999998877 54322210
Q ss_pred eeeecccCCCcccccceEEEEEecCCCCccceeeeEeecCcceEEec-CCc-EE-EEeecCccccCCCceEEEEECCCCc
Q 003171 356 NRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGA-ADA-VR-RVAAKGGFGDDNRRTEALTTSIDGM 432 (842)
Q Consensus 356 ~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~-~~~-v~-~v~~~g~~~~~~~~v~al~~s~dg~ 432 (842)
+.+.+.... + + +.+.+++...+... .++ +. .......+......+ .+.+++++.
T Consensus 156 --v~~~p~~~~------~--~------------~~~~~dg~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~g~ 212 (361)
T 2oiz_A 156 --VIPQPNRPR------S--F------------MTICGDGGLLTINLGEDGKVASQSRSKQMFSVKDDPI-FIAPALDKD 212 (361)
T ss_dssp --EEECTTSSS------E--E------------EEEETTSSEEEEEECTTSSEEEEEECCCCSCTTTSCB-CSCCEECSS
T ss_pred --eEEcCCCCe------e--E------------EEECCCCcEEEEEECCCCcEeeeccccceEcCCCCce-EEEecccCC
Confidence 011111000 0 0 01111111111110 000 00 000000011111111 122345553
Q ss_pred -EEEEeCCCeEEEEcCCC-C--eeeeee------------cCCccEEEEEecCCEEEEEec-----------CcEEEEEe
Q 003171 433 -IWTGGANGLLLQWDPNG-N--RLQDFQ------------YLPFAVQCLCTFGSQIWVGYM-----------NGIVQVLD 485 (842)
Q Consensus 433 -l~Sgs~DgtIrlWD~~g-~--~l~~l~------------~H~~~V~sls~dG~~LasGs~-----------DgtIrlWD 485 (842)
++..+.++.|.+||..+ . .+..+. ........+.++|++++++.. +++|.+||
T Consensus 213 ~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD 292 (361)
T 2oiz_A 213 KAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMD 292 (361)
T ss_dssp EEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEE
T ss_pred EEEEEeCCCeEEEEEecCCCceecccccccCccccccccccCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEE
Confidence 66667788999999843 2 122211 111123467788898887654 35899999
Q ss_pred CC-CcccccccccccCEEEEE--eCCCEEEEEcCCCCeeeccccCC
Q 003171 486 LE-GNLLGGWVAHSSPVIKMA--VGAGYIFTLANHGGIRGWNVTSP 528 (842)
Q Consensus 486 ~~-g~~i~~l~gH~~~V~sla--~dg~~l~S~S~DgtIrvWd~~~~ 528 (842)
++ ++.++++..|. +++|+ +||++|++++. ++|.+||..+.
T Consensus 293 ~~t~~~v~~i~~~~--p~~ia~spdg~~l~v~n~-~~v~v~D~~t~ 335 (361)
T 2oiz_A 293 TKTKQRVARIPGRD--ALSMTIDQQRNLMLTLDG-GNVNVYDISQP 335 (361)
T ss_dssp TTTTEEEEEEECTT--CCEEEEETTTTEEEEECS-SCEEEEECSSS
T ss_pred CCCCcEEEEEecCC--eeEEEECCCCCEEEEeCC-CeEEEEECCCC
Confidence 97 67888888877 77776 58999998887 99999998764
|
| >2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* | Back alignment and structure |
|---|
Probab=99.23 E-value=3.4e-08 Score=103.99 Aligned_cols=265 Identities=11% Similarity=0.085 Sum_probs=161.4
Q ss_pred eeEEEEecCC-EEEEec--CCCEEEEeCCCCccccccccccccCCCCCCCCCCeeeeeecCCCeEEEEEcCCCCEEEEEe
Q 003171 134 FLRTIVCTEE-QLWAGG--ENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGH 210 (842)
Q Consensus 134 ~~~~l~~~~~-~l~~~~--D~~vrvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~V~~la~dpdg~~LaSGs 210 (842)
.++.|+.+.+ .+|++. ++.|.+||.. ..... +..... ...+.+++++++|.+.++..
T Consensus 16 ~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~~~~------------------~~~~~~-~~~~~~i~~~~~g~l~v~~~ 75 (299)
T 2z2n_A 16 GPYGITVSDKGKVWITQHKANMISCINLD-GKITE------------------YPLPTP-DAKVMCLTISSDGEVWFTEN 75 (299)
T ss_dssp CEEEEEECTTSCEEEEETTTTEEEEECTT-CCEEE------------------EECSST-TCCEEEEEECTTSCEEEEET
T ss_pred CccceEECCCCCEEEEecCCCcEEEEcCC-CCeEE------------------ecCCcc-cCceeeEEECCCCCEEEeCC
Confidence 4667777744 788865 5789999976 22110 000001 34688999999998777767
Q ss_pred CCCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCCCEEEe-eCCCcEEEEeCCCccce-eecCCCceeeeEE
Q 003171 211 RDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGDLWSG-SEGGGIKIWPWEAIEKA-LSLKPEERHTAAL 288 (842)
Q Consensus 211 ~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~L~Sg-S~DgtIrvWd~~t~~~~-l~~~~~~~~~~~l 288 (842)
.++.|..|+..+. .....+..+...+.+|+++++|+||.+ ..++.|.+||. +++.. +....
T Consensus 76 ~~~~i~~~~~~g~--------~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~-------- 138 (299)
T 2z2n_A 76 AANKIGRITKKGI--------IKEYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKIREYELPN-------- 138 (299)
T ss_dssp TTTEEEEECTTSC--------EEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSS--------
T ss_pred CCCeEEEECCCCc--------EEEEeCCCcCCCceeeEECCCCCEEEEecCCceEEEECC-CCCEEEecCCC--------
Confidence 7889999997632 122222334567899999999998754 56789999997 32211 10000
Q ss_pred EEeeceeecccceeccceeeeecCCEEEEEEcCCCCEEEEeC--CCcEEEEEccCCcEEEEeecCCceEeeeecccCCCc
Q 003171 289 IVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG--FLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDF 366 (842)
Q Consensus 289 ~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s--~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~ 366 (842)
.......++.++++ .+|.+. .+.|.+||. +++.... ..
T Consensus 139 ---------------------~~~~~~~i~~~~~g-~l~v~~~~~~~i~~~~~-~g~~~~~-~~---------------- 178 (299)
T 2z2n_A 139 ---------------------KGSYPSFITLGSDN-ALWFTENQNNAIGRITE-SGDITEF-KI---------------- 178 (299)
T ss_dssp ---------------------TTCCEEEEEECTTS-CEEEEETTTTEEEEECT-TCCEEEE-EC----------------
T ss_pred ---------------------CCCCCceEEEcCCC-CEEEEeCCCCEEEEEcC-CCcEEEe-eC----------------
Confidence 01234567776655 455543 357888887 6554211 00
Q ss_pred ccccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEeecCccccCCCceEEEEECCCCcEEEEeC-CCeEEEE
Q 003171 367 AMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGMIWTGGA-NGLLLQW 445 (842)
Q Consensus 367 ~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~al~~s~dg~l~Sgs~-DgtIrlW 445 (842)
......+..++++++|.+|.+.. ++.|.+|
T Consensus 179 -------------------------------------------------~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~ 209 (299)
T 2z2n_A 179 -------------------------------------------------PTPASGPVGITKGNDDALWFVEIIGNKIGRI 209 (299)
T ss_dssp -------------------------------------------------SSTTCCEEEEEECTTSSEEEEETTTTEEEEE
T ss_pred -------------------------------------------------CCCCCcceeEEECCCCCEEEEccCCceEEEE
Confidence 00011234677888899887763 6789999
Q ss_pred cCCCCeeee-eecCCccEEEEEec--CCEEEEEe-cCcEEEEEeCCCcccc-cccccccCEEEEEe-CCCEEEEEcCCCC
Q 003171 446 DPNGNRLQD-FQYLPFAVQCLCTF--GSQIWVGY-MNGIVQVLDLEGNLLG-GWVAHSSPVIKMAV-GAGYIFTLANHGG 519 (842)
Q Consensus 446 D~~g~~l~~-l~~H~~~V~sls~d--G~~LasGs-~DgtIrlWD~~g~~i~-~l~gH~~~V~sla~-dg~~l~S~S~Dgt 519 (842)
|.+++.... +..+...+.+++.+ |. ||.+. .++.|.+||.+++... .+..+...+.+++. ++...++.+ .+.
T Consensus 210 ~~~g~~~~~~~~~~~~~~~~i~~~~~g~-l~v~~~~~~~i~~~d~~g~~~~~~~~~~~~~~~~i~~~~g~l~v~~~-~~~ 287 (299)
T 2z2n_A 210 TTSGEITEFKIPTPNARPHAITAGAGID-LWFTEWGANKIGRLTSNNIIEEYPIQIKSAEPHGICFDGETIWFAME-CDK 287 (299)
T ss_dssp CTTCCEEEEECSSTTCCEEEEEECSTTC-EEEEETTTTEEEEEETTTEEEEEECSSSSCCEEEEEECSSCEEEEET-TTE
T ss_pred CCCCcEEEEECCCCCCCceeEEECCCCC-EEEeccCCceEEEECCCCceEEEeCCCCCCccceEEecCCCEEEEec-CCc
Confidence 996654322 22345678888775 55 66665 6789999998765322 13345567887775 444444444 455
Q ss_pred eeecccc
Q 003171 520 IRGWNVT 526 (842)
Q Consensus 520 IrvWd~~ 526 (842)
|..++..
T Consensus 288 l~~~~~~ 294 (299)
T 2z2n_A 288 IGKLTLI 294 (299)
T ss_dssp EEEEEEC
T ss_pred EEEEEcC
Confidence 6655543
|
| >2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.23 E-value=4.2e-09 Score=114.15 Aligned_cols=95 Identities=12% Similarity=0.077 Sum_probs=66.2
Q ss_pred CCCCc-EEEEeCC--------CeEEEEcCCCCeeeeeecCCccEEE-EEe-cCCEEEEEecCcEEEEEeCC-Cccccccc
Q 003171 428 SIDGM-IWTGGAN--------GLLLQWDPNGNRLQDFQYLPFAVQC-LCT-FGSQIWVGYMNGIVQVLDLE-GNLLGGWV 495 (842)
Q Consensus 428 s~dg~-l~Sgs~D--------gtIrlWD~~g~~l~~l~~H~~~V~s-ls~-dG~~LasGs~DgtIrlWD~~-g~~i~~l~ 495 (842)
+|||+ |+.++.+ ..|.+|| +++....+..|...|.+ +.. || .+++++.++.++|| +. |+. ..+.
T Consensus 223 spdg~~l~~~~~~~~~~~~~~~~l~~~d-~~~~~~l~~~~~~~~~~~~~~sdg-~~~~~~~~~~~~l~-~~~g~~-~~~~ 298 (347)
T 2gop_A 223 DSDGERILLYGKPEKKYMSEHNKLYIYD-GKEVMGILDEVDRGVGQAKIKDGK-VYFTLFEEGSVNLY-IWDGEI-KPIA 298 (347)
T ss_dssp EECSSCEEEEECCSSSCCCSSCEEEEEC-SSCEEESSTTCCSEEEEEEEETTE-EEEEEEETTEEEEE-EESSSE-EEEE
T ss_pred CCCCCEEEEEEccccCCccccceEEEEC-CCceEeccccCCcccCCccEEcCc-EEEEEecCCcEEEE-EcCCce-EEEe
Confidence 56765 5555533 4688899 77665555566677775 544 66 88888999999999 76 554 3444
Q ss_pred ccccCEEEEEeCCCEEEEEcCCCCe-eecccc
Q 003171 496 AHSSPVIKMAVGAGYIFTLANHGGI-RGWNVT 526 (842)
Q Consensus 496 gH~~~V~sla~dg~~l~S~S~DgtI-rvWd~~ 526 (842)
.+.+.|.++++++..+++++.+++. ++|.+.
T Consensus 299 ~~~~~v~~~~~s~~~~~~~~~~~~~~~l~~~~ 330 (347)
T 2gop_A 299 KGRHWIMGFDVDEIVVYLKETATRLRELFTWD 330 (347)
T ss_dssp CSSSEEEEEEESSSEEEEEECSSSCCEEEEES
T ss_pred cCCCeEEeeeeeCcEEEEEcCCCChHHheEeC
Confidence 5677888888755666777777765 888764
|
| >1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1 | Back alignment and structure |
|---|
Probab=99.22 E-value=8.1e-09 Score=109.04 Aligned_cols=231 Identities=7% Similarity=0.069 Sum_probs=139.3
Q ss_pred EEEecC-CEEEEe--cCCCEEEEeCCCCccccccccccccCCCCCCCCCCeeeeeecCCCeEEEEEc-CCCCEEEEEeC-
Q 003171 137 TIVCTE-EQLWAG--GENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGD-EASGVVWSGHR- 211 (842)
Q Consensus 137 ~l~~~~-~~l~~~--~D~~vrvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~V~~la~d-pdg~~LaSGs~- 211 (842)
.|+.+. ..+|++ .++.|++||.+.. .... . +.....+ .+ ...+.+++++ ++++++++...
T Consensus 34 ~v~~~~~g~l~v~~~~~~~i~~~d~~g~-~~~~-----~----~~~~~~~----~~-~~~p~~i~~~~~~g~l~v~~~~~ 98 (286)
T 1q7f_A 34 GVAVNAQNDIIVADTNNHRIQIFDKEGR-FKFQ-----F----GECGKRD----SQ-LLYPNRVAVVRNSGDIIVTERSP 98 (286)
T ss_dssp EEEECTTCCEEEEEGGGTEEEEECTTSC-EEEE-----E----CCBSSST----TC-BSSEEEEEEETTTTEEEEEECGG
T ss_pred eEEECCCCCEEEEECCCCEEEEECCCCc-EEEE-----e----cccCCCc----cc-ccCceEEEEEcCCCeEEEEcCCC
Confidence 455543 367764 4789999997632 1110 0 0000000 01 2357889994 56655555533
Q ss_pred CCcEEEEECCCCccCCCCCcceeEEec-ccCCcEEEEEEecCCCEE-EeeCCCcEEEEeCCCccceeecCCCceeeeEEE
Q 003171 212 DGRIMCWKMNARLLDSDDGFGEVLSWQ-AHRGPVLSLCISSYGDLW-SGSEGGGIKIWPWEAIEKALSLKPEERHTAALI 289 (842)
Q Consensus 212 DGtIrlWdl~~g~~~~~~~~~~~~~l~-gH~~~V~slafs~dG~L~-SgS~DgtIrvWd~~t~~~~l~~~~~~~~~~~l~ 289 (842)
++.|++|+..+ +....+. ++...+.+|+++++|+|| +.+.++.|.+|+.+.. ....+..
T Consensus 99 ~~~i~~~d~~g---------~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g~-~~~~~~~--------- 159 (286)
T 1q7f_A 99 THQIQIYNQYG---------QFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQNGN-VLHKFGC--------- 159 (286)
T ss_dssp GCEEEEECTTS---------CEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTTSC-EEEEEEC---------
T ss_pred CCEEEEECCCC---------cEEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCCCC-EEEEeCC---------
Confidence 89999999543 3444443 345678999999999975 5567889999997431 1110000
Q ss_pred EeeceeecccceeccceeeeecCCEEEEEEcCCCCEEEEeC--CCcEEEEEccCCcEEEEeecCCceEeeeecccCCCcc
Q 003171 290 VERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG--FLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFA 367 (842)
Q Consensus 290 ~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s--~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~~ 367 (842)
.++ ......++.++++. +|.+. +..|++||.. ++.+..+..++
T Consensus 160 --------~~~----------~~~p~~i~~~~~g~-l~v~~~~~~~i~~~~~~-g~~~~~~~~~g--------------- 204 (286)
T 1q7f_A 160 --------SKH----------LEFPNGVVVNDKQE-IFISDNRAHCVKVFNYE-GQYLRQIGGEG--------------- 204 (286)
T ss_dssp --------TTT----------CSSEEEEEECSSSE-EEEEEGGGTEEEEEETT-CCEEEEESCTT---------------
T ss_pred --------CCc----------cCCcEEEEECCCCC-EEEEECCCCEEEEEcCC-CCEEEEEccCC---------------
Confidence 000 12355677777655 55443 4689999873 44433321110
Q ss_pred cccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEeecCccccCCCceEEEEECCCCcEEEEe-CCC-eEEEE
Q 003171 368 MEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGMIWTGG-ANG-LLLQW 445 (842)
Q Consensus 368 ~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~al~~s~dg~l~Sgs-~Dg-tIrlW 445 (842)
+...+..++++++|.+|.+. .++ .|++|
T Consensus 205 --------------------------------------------------~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~ 234 (286)
T 1q7f_A 205 --------------------------------------------------ITNYPIGVGINSNGEILIADNHNNFNLTIF 234 (286)
T ss_dssp --------------------------------------------------TSCSEEEEEECTTCCEEEEECSSSCEEEEE
T ss_pred --------------------------------------------------ccCCCcEEEECCCCCEEEEeCCCCEEEEEE
Confidence 01224567889999976655 454 89999
Q ss_pred cCCCCeeeeeecCCc--cEEEEEe--cCCEEEEEecCcEEEEEeCC
Q 003171 446 DPNGNRLQDFQYLPF--AVQCLCT--FGSQIWVGYMNGIVQVLDLE 487 (842)
Q Consensus 446 D~~g~~l~~l~~H~~--~V~sls~--dG~~LasGs~DgtIrlWD~~ 487 (842)
|.+|+.+.++..+.. .+.+++. +|+ |++++.|++|++|+..
T Consensus 235 ~~~g~~~~~~~~~~~~~~~~~i~~~~~g~-l~vs~~~~~v~v~~~~ 279 (286)
T 1q7f_A 235 TQDGQLISALESKVKHAQCFDVALMDDGS-VVLASKDYRLYIYRYV 279 (286)
T ss_dssp CTTSCEEEEEEESSCCSCEEEEEEETTTE-EEEEETTTEEEEEECS
T ss_pred CCCCCEEEEEcccCCCCcceeEEECCCCc-EEEECCCCeEEEEEcc
Confidence 999988888876543 3566654 565 4444779999999975
|
| >2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A | Back alignment and structure |
|---|
Probab=99.20 E-value=1.1e-08 Score=110.33 Aligned_cols=222 Identities=14% Similarity=0.125 Sum_probs=134.2
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCCCEEEee-CC----CcEE
Q 003171 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGDLWSGS-EG----GGIK 265 (842)
Q Consensus 191 ~~~V~~la~dpdg~~LaSGs~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~L~SgS-~D----gtIr 265 (842)
...+.+++++++|++++++..++.|.+||..++ +.......+...|.+|+++++|+||.+. .+ +.|.
T Consensus 44 ~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~--------~~~~~~~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~ 115 (333)
T 2dg1_A 44 GLQLEGLNFDRQGQLFLLDVFEGNIFKINPETK--------EIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIF 115 (333)
T ss_dssp CCCEEEEEECTTSCEEEEETTTCEEEEECTTTC--------CEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEE
T ss_pred CccccCcEECCCCCEEEEECCCCEEEEEeCCCC--------cEEEEeeCCCCCcceEEECCCCcEEEEeCCCCCCCceEE
Confidence 345688999999998889999999999999876 2222233567889999999999976554 44 5899
Q ss_pred EEeCCCccceeecCCCceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcCCCCEEEEeCC--------CcEEEE
Q 003171 266 IWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGF--------LSFALW 337 (842)
Q Consensus 266 vWd~~t~~~~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s~--------~tI~lW 337 (842)
+||.++......+.... ....+..++.++++. +|.+.. ..|..+
T Consensus 116 ~~d~~~~~~~~~~~~~~---------------------------~~~~~~~i~~d~~g~-l~v~~~~~~~~~~~~~l~~~ 167 (333)
T 2dg1_A 116 AATENGDNLQDIIEDLS---------------------------TAYCIDDMVFDSKGG-FYFTDFRGYSTNPLGGVYYV 167 (333)
T ss_dssp EECTTSCSCEEEECSSS---------------------------SCCCEEEEEECTTSC-EEEEECCCBTTBCCEEEEEE
T ss_pred EEeCCCCEEEEEEccCc---------------------------cCCcccceEECCCCC-EEEEeccccccCCCceEEEE
Confidence 99987643210010000 012355667776654 443322 123333
Q ss_pred EccCCcEEEEeecCCceEeeeecccCCCcccccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEeecCcccc
Q 003171 338 DARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGD 417 (842)
Q Consensus 338 D~~tg~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~ 417 (842)
|..++++.... .
T Consensus 168 ~~~~~~~~~~~--------------------------------------------------------------------~ 179 (333)
T 2dg1_A 168 SPDFRTVTPII--------------------------------------------------------------------Q 179 (333)
T ss_dssp CTTSCCEEEEE--------------------------------------------------------------------E
T ss_pred eCCCCEEEEee--------------------------------------------------------------------c
Confidence 33332221100 0
Q ss_pred CCCceEEEEECCCCc-EEEE-eCCCeEEEEcC--CCCeeeee--------ecCCccEEEEEec--CCEEEEEecCcEEEE
Q 003171 418 DNRRTEALTTSIDGM-IWTG-GANGLLLQWDP--NGNRLQDF--------QYLPFAVQCLCTF--GSQIWVGYMNGIVQV 483 (842)
Q Consensus 418 ~~~~v~al~~s~dg~-l~Sg-s~DgtIrlWD~--~g~~l~~l--------~~H~~~V~sls~d--G~~LasGs~DgtIrl 483 (842)
....+..+++++||. |+.+ +.++.|.+||. +|+.+..+ .++ ..+..++.+ |...++...++.|.+
T Consensus 180 ~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~-~~~~~i~~d~~G~l~v~~~~~~~v~~ 258 (333)
T 2dg1_A 180 NISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGH-EGPDSCCIDSDDNLYVAMYGQGRVLV 258 (333)
T ss_dssp EESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSS-SEEEEEEEBTTCCEEEEEETTTEEEE
T ss_pred CCCcccceEECCCCCEEEEEeCCCCeEEEEEecCCCcCcccccceEEEecCCC-CCCCceEECCCCCEEEEEcCCCEEEE
Confidence 001234678899986 6554 45788999998 35544322 122 356667664 654444446789999
Q ss_pred EeCCCccccccccccc------CEEEEEe--CCCEEEEEcCC
Q 003171 484 LDLEGNLLGGWVAHSS------PVIKMAV--GAGYIFTLANH 517 (842)
Q Consensus 484 WD~~g~~i~~l~gH~~------~V~sla~--dg~~l~S~S~D 517 (842)
||.+++.+..+..+.. .+.++++ |++.|+.++.+
T Consensus 259 ~d~~g~~~~~~~~~~~~~g~~~~~~~~~~~~dg~~L~v~~~~ 300 (333)
T 2dg1_A 259 FNKRGYPIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICSND 300 (333)
T ss_dssp ECTTSCEEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEEEC
T ss_pred ECCCCCEEEEEEcCCCccccccCcceEEECCCCCEEEEEeCc
Confidence 9998877666654432 5777764 56666644444
|
| >4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A* | Back alignment and structure |
|---|
Probab=99.14 E-value=2.2e-08 Score=122.28 Aligned_cols=316 Identities=14% Similarity=0.209 Sum_probs=192.4
Q ss_pred eEEEEec-CCEEEEecCCCEEEEeCCCCccccccccccccCCCCCCCCCCeeeeeecCCC-eEEEEEcCCCCEEEEEeCC
Q 003171 135 LRTIVCT-EEQLWAGGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSS-VMCMVGDEASGVVWSGHRD 212 (842)
Q Consensus 135 ~~~l~~~-~~~l~~~~D~~vrvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-V~~la~dpdg~~LaSGs~D 212 (842)
+.+|..+ ...+|+++.++|.+||.++...... ..... ... |.++..+++| .||.|+.+
T Consensus 133 i~~i~~d~~g~lwi~t~~gl~~~~~~~~~~~~~------------------~~~~~-~~~~i~~i~~d~~g-~lwigt~~ 192 (795)
T 4a2l_A 133 VNGIEEISPEQLLISTPEGLIMFDIKESKFIDD------------------SFSTA-MHKTIASTLYRQGD-QIYIGTST 192 (795)
T ss_dssp CCEEEEEETTEEEEEETTEEEEEETTTTEEECS------------------SSCHH-HHTCCEEEEEEETT-EEEEEESS
T ss_pred EEEEEECCCCCEEEEECCceEEEECCCCEEEec------------------cCCCC-CCcceEEEEECCCC-CEEEEECC
Confidence 5667666 5589999889999999764321100 00001 123 8889988665 67888887
Q ss_pred CcEEEEECCCCccCCCCCcceeEEe--cccCCcEEEEEEecCCCEEEeeCCCcEEEEeCCCccceeecCCCceeeeEEEE
Q 003171 213 GRIMCWKMNARLLDSDDGFGEVLSW--QAHRGPVLSLCISSYGDLWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIV 290 (842)
Q Consensus 213 GtIrlWdl~~g~~~~~~~~~~~~~l--~gH~~~V~slafs~dG~L~SgS~DgtIrvWd~~t~~~~l~~~~~~~~~~~l~~ 290 (842)
+-+..|+..++. ...+ ..+...|.+|..+++|.||.|+.++.|.+||..+.+.. .+....
T Consensus 193 ~Gl~~~~~~~~~---------~~~~~~~~~~~~i~~i~~d~~g~lwigt~~~Gl~~~~~~~~~~~-~~~~~~-------- 254 (795)
T 4a2l_A 193 DGLYTYSITQKT---------FEKVIPILGTKQIQAILQQSPTRIWVATEGAGLFLINPKTKEIK-NYLHSP-------- 254 (795)
T ss_dssp SCEEEEETTTCC---------EEECC----CCCEEEEEEEETTEEEEEEBSSCEEEEETTTTEEE-EECCCT--------
T ss_pred CCEEEEeCCCCe---------EEEecCCCCCCeeEEEEEcCCCCEEEEECCCCeEEEeCCCCeEE-EeecCC--------
Confidence 567889987641 1111 22456799999999999999988777999998653211 010000
Q ss_pred eeceeecccceeccceeeeecCCEEEEEEcCCCCEEEEeCCCcEEEEEccCCcEEEEeecCCceEeeeecccCCCccccc
Q 003171 291 ERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGFLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMED 370 (842)
Q Consensus 291 ~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~~~~~ 370 (842)
.....++...+.+++.++ .+.+|.++..+|.+||..++++.......... ..++. .
T Consensus 255 -------------~~~~~l~~~~i~~i~~d~-~g~lWigt~~Gl~~~~~~~~~~~~~~~~~~~~---~~l~~-------~ 310 (795)
T 4a2l_A 255 -------------SNPKSISSNYIRSLAMDS-QNRLWIGTFNDLNIYHEGTDSFASYSSNPVEN---GSLSQ-------R 310 (795)
T ss_dssp -------------TCTTSCSCSBEEEEEECT-TSCEEEEESSCEEEEETTTTEEEEECCCTTST---TSCSS-------S
T ss_pred -------------CCccccCCCeEEEEEEcC-CCCEEEEeCChhheEcCCCCeEEEEecCCCCC---CCCCC-------C
Confidence 000001234577787765 45789888779999999888764322111000 00000 0
Q ss_pred ceEEEEEecCCCCccceeeeEeecCcceEEecC-CcEEEEeec-Ccccc----------CCCceEEEEECCCCcEEEEeC
Q 003171 371 EFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAA-DAVRRVAAK-GGFGD----------DNRRTEALTTSIDGMIWTGGA 438 (842)
Q Consensus 371 ~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~-~~v~~v~~~-g~~~~----------~~~~v~al~~s~dg~l~Sgs~ 438 (842)
.+. ++ +.+.....|+|+. .|+.++... +.+.. ....|.+++.+++|.||.|+.
T Consensus 311 ~i~--------------~i-~~D~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~l~~~~V~~i~~d~~g~lWiGt~ 375 (795)
T 4a2l_A 311 SVR--------------SI-FMDSQGGMWLGTYFGGLNYYHPIRNRFKNIRNIPYKNSLSDNVVSCIVEDKDKNLWIGTN 375 (795)
T ss_dssp CEE--------------EE-EECTTSCEEEEESSSCEEEECGGGGSSEEECCCTTSSSCSCSSEEEEEECTTSCEEEEES
T ss_pred cEE--------------EE-EEeCCcCEEEEECCCCeEEeCCCcccceEEcCCCCCCCCCCCeeEEEEECCCCCEEEEEC
Confidence 000 01 1122345688886 577777542 22210 234688999999999999998
Q ss_pred CCeEEEEcCCCCeeeeee---------cCCccEEEEEec--CCEEEEEecCcEEEEEeCCCccccccc-----ccccCEE
Q 003171 439 NGLLLQWDPNGNRLQDFQ---------YLPFAVQCLCTF--GSQIWVGYMNGIVQVLDLEGNLLGGWV-----AHSSPVI 502 (842)
Q Consensus 439 DgtIrlWD~~g~~l~~l~---------~H~~~V~sls~d--G~~LasGs~DgtIrlWD~~g~~i~~l~-----gH~~~V~ 502 (842)
++-|..||........+. .....|.++..| |..||+|+.++.|.+||.++.....+. .+...|.
T Consensus 376 ~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~~~~~~~~~~l~~~~v~ 455 (795)
T 4a2l_A 376 DGGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQVENFNQRNSQLVNENVY 455 (795)
T ss_dssp SSCEEEECTTTCCEEEECCC------CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETTTCCEEEECTTTSCCSCSCEE
T ss_pred CCCeEEEcCCCCcEEEEecCCCCcccCCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCcEEEeecCCCCcCCCeeE
Confidence 867999999533333332 124679999875 444999999889999998743222221 3456899
Q ss_pred EEEeCCCEEEEEcCCCCeeeccccC
Q 003171 503 KMAVGAGYIFTLANHGGIRGWNVTS 527 (842)
Q Consensus 503 sla~dg~~l~S~S~DgtIrvWd~~~ 527 (842)
++..|.+..++.++.+++.+|+..+
T Consensus 456 ~i~~d~~g~lwigt~~Gl~~~~~~~ 480 (795)
T 4a2l_A 456 AILPDGEGNLWLGTLSALVRFNPEQ 480 (795)
T ss_dssp EEEECSSSCEEEEESSCEEEEETTT
T ss_pred EEEECCCCCEEEEecCceeEEeCCC
Confidence 9987654433434447788888543
|
| >4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ... | Back alignment and structure |
|---|
Probab=99.14 E-value=7.9e-09 Score=125.23 Aligned_cols=105 Identities=11% Similarity=-0.011 Sum_probs=73.2
Q ss_pred EEEEecCCCEEEEeCCCCccccccccccccCCCCCCCCCCeeeeeecCCCeEEEEEcCCCCEEEEEeCC---------Cc
Q 003171 144 QLWAGGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGHRD---------GR 214 (842)
Q Consensus 144 ~l~~~~D~~vrvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~V~~la~dpdg~~LaSGs~D---------Gt 214 (842)
+++++.|++|++||+++...... +. +.. +. .. ......+++||||+.|+.++.+ +.
T Consensus 29 ~~~~~~~~~i~~~~~~~~~~~~~-----~~---~~~----~~--~~-~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~ 93 (740)
T 4a5s_A 29 EYLYKQENNILVFNAEYGNSSVF-----LE---NST----FD--EF-GHSINDYSISPDGQFILLEYNYVKQWRHSYTAS 93 (740)
T ss_dssp EEEEEETTEEEEEETTTCCEEEE-----EC---TTT----TT--TC-CSCCCEEEECTTSSEEEEEEEEEECSSSCEEEE
T ss_pred cEEEEcCCcEEEEECCCCceEEE-----Ee---chh----hh--hh-cccccceEECCCCCEEEEEECCeeeEEEccceE
Confidence 44444499999999987543211 00 000 00 00 1122347899999999999987 45
Q ss_pred EEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCCC-EEEeeCCCcEEEEeCCCcc
Q 003171 215 IMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIE 273 (842)
Q Consensus 215 IrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~~t~~ 273 (842)
+.+||+.++ ....+.+|.+.+..++|||||+ |+.+ .|+.|.+|++.++.
T Consensus 94 ~~~~d~~~~---------~~~~l~~~~~~~~~~~~SPdG~~la~~-~~~~i~~~~~~~~~ 143 (740)
T 4a5s_A 94 YDIYDLNKR---------QLITEERIPNNTQWVTWSPVGHKLAYV-WNNDIYVKIEPNLP 143 (740)
T ss_dssp EEEEETTTT---------EECCSSCCCTTEEEEEECSSTTCEEEE-ETTEEEEESSTTSC
T ss_pred EEEEECCCC---------cEEEcccCCCcceeeEECCCCCEEEEE-ECCeEEEEECCCCc
Confidence 569999996 3455778888999999999998 7666 47899999997754
|
| >2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A | Back alignment and structure |
|---|
Probab=99.13 E-value=1.8e-09 Score=116.69 Aligned_cols=228 Identities=10% Similarity=0.009 Sum_probs=146.7
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCCCEE-EeeCCCcEEEEeCC
Q 003171 192 SSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGDLW-SGSEGGGIKIWPWE 270 (842)
Q Consensus 192 ~~V~~la~dpdg~~LaSGs~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~L~-SgS~DgtIrvWd~~ 270 (842)
..|.++++++++..+++.+.++.++.|. + .....+.+|...+.+++|+++|+|| +++.++.|.+||.+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~--------~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~ 74 (333)
T 2dg1_A 6 QDLPTLFYSGKSNSAVPIISESELQTIT---A--------EPWLEISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPE 74 (333)
T ss_dssp CCCCBCCSCGGGGCSSCCCCGGGSCEEE---C--------EEEEEEESSCCCEEEEEECTTSCEEEEETTTCEEEEECTT
T ss_pred cccceeeecCCccceeEEeecccCcccc---c--------ceeEEEeccCccccCcEECCCCCEEEEECCCCEEEEEeCC
Confidence 4577788898888888888899999992 2 4456677777788999999999976 78889999999987
Q ss_pred CccceeecCCCceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcCCCCEEEEeCC-----CcEEEEEccCCcEE
Q 003171 271 AIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGF-----LSFALWDARTRELL 345 (842)
Q Consensus 271 t~~~~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s~-----~tI~lWD~~tg~~l 345 (842)
+++....... ....+..++.++++..+++... ..|.+||..++++.
T Consensus 75 ~~~~~~~~~~-----------------------------~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~ 125 (333)
T 2dg1_A 75 TKEIKRPFVS-----------------------------HKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQ 125 (333)
T ss_dssp TCCEEEEEEC-----------------------------SSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCE
T ss_pred CCcEEEEeeC-----------------------------CCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEEE
Confidence 6432110000 0234667777776654444333 36888888766542
Q ss_pred EEeecCCceEeeeecccCCCcccccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEeecCccccCCCceEEE
Q 003171 346 KVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEAL 425 (842)
Q Consensus 346 ~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~al 425 (842)
..+... .....+..+
T Consensus 126 ~~~~~~-----------------------------------------------------------------~~~~~~~~i 140 (333)
T 2dg1_A 126 DIIEDL-----------------------------------------------------------------STAYCIDDM 140 (333)
T ss_dssp EEECSS-----------------------------------------------------------------SSCCCEEEE
T ss_pred EEEccC-----------------------------------------------------------------ccCCcccce
Confidence 111100 011234567
Q ss_pred EECCCCcEEEEeCC-------CeEEEEcCCCCeeeeeecCCccEEEEE--ecCCEEEEEe-cCcEEEEEeCC--Cccccc
Q 003171 426 TTSIDGMIWTGGAN-------GLLLQWDPNGNRLQDFQYLPFAVQCLC--TFGSQIWVGY-MNGIVQVLDLE--GNLLGG 493 (842)
Q Consensus 426 ~~s~dg~l~Sgs~D-------gtIrlWD~~g~~l~~l~~H~~~V~sls--~dG~~LasGs-~DgtIrlWD~~--g~~i~~ 493 (842)
+++++|.+|.++.. +.|..||.++..+..+..+...+..++ ++|++|+.+. .++.|.+||++ ++.+..
T Consensus 141 ~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~ 220 (333)
T 2dg1_A 141 VFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQP 220 (333)
T ss_dssp EECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEE
T ss_pred EECCCCCEEEEeccccccCCCceEEEEeCCCCEEEEeecCCCcccceEECCCCCEEEEEeCCCCeEEEEEecCCCcCccc
Confidence 88899998877653 557777775533444433334466664 5788776654 57899999984 443321
Q ss_pred --------ccccccCEEEEEe--CCCEEEEEcCCCCeeeccc
Q 003171 494 --------WVAHSSPVIKMAV--GAGYIFTLANHGGIRGWNV 525 (842)
Q Consensus 494 --------l~gH~~~V~sla~--dg~~l~S~S~DgtIrvWd~ 525 (842)
+.+| ..+..++. +|...++...++.|.+|+.
T Consensus 221 ~~~~~~~~~~~~-~~~~~i~~d~~G~l~v~~~~~~~v~~~d~ 261 (333)
T 2dg1_A 221 FGATIPYYFTGH-EGPDSCCIDSDDNLYVAMYGQGRVLVFNK 261 (333)
T ss_dssp EEEEEEEECCSS-SEEEEEEEBTTCCEEEEEETTTEEEEECT
T ss_pred ccceEEEecCCC-CCCCceEECCCCCEEEEEcCCCEEEEECC
Confidence 2222 35666775 5666666666889999985
|
| >3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.12 E-value=3.9e-08 Score=104.53 Aligned_cols=229 Identities=13% Similarity=0.094 Sum_probs=139.9
Q ss_pred eEEEEec--CC-EEEEec-CCCEEEEeCCCCccccccccccccCCCCCCCCCCeeeeeecCCCeEEEEEcCCCCEEEEEe
Q 003171 135 LRTIVCT--EE-QLWAGG-ENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGH 210 (842)
Q Consensus 135 ~~~l~~~--~~-~l~~~~-D~~vrvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~V~~la~dpdg~~LaSGs 210 (842)
...++.+ ++ .+|++. +++|.+||.++. . .. +. .. ...+.+++++++|+++++.+
T Consensus 30 ~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~-~-~~-----------------~~--~~-~~~~~~l~~~~dg~l~v~~~ 87 (296)
T 3e5z_A 30 TEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ-L-SP-----------------EM--HP-SHHQNGHCLNKQGHLIACSH 87 (296)
T ss_dssp EEEEEEEGGGTEEEEEEGGGTEEEEEETTSC-E-EE-----------------EE--SS-CSSEEEEEECTTCCEEEEET
T ss_pred ccCCeEeCCCCEEEEEeCCCCEEEEEECCCC-e-EE-----------------EE--CC-CCCcceeeECCCCcEEEEec
Confidence 3344544 44 356654 689999998754 1 10 11 12 45688999999999888777
Q ss_pred CCCcEEEEECCCCccCCCCCcceeEEec---cc-CCcEEEEEEecCCCEEE-----eeCC-----------CcEEEEeCC
Q 003171 211 RDGRIMCWKMNARLLDSDDGFGEVLSWQ---AH-RGPVLSLCISSYGDLWS-----GSEG-----------GGIKIWPWE 270 (842)
Q Consensus 211 ~DGtIrlWdl~~g~~~~~~~~~~~~~l~---gH-~~~V~slafs~dG~L~S-----gS~D-----------gtIrvWd~~ 270 (842)
.++.|.+||..++ +...... +. ...+.+++++|+|+||. |+.+ +.-+||.++
T Consensus 88 ~~~~i~~~d~~~g--------~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~ 159 (296)
T 3e5z_A 88 GLRRLERQREPGG--------EWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLA 159 (296)
T ss_dssp TTTEEEEECSTTC--------CEEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEEC
T ss_pred CCCeEEEEcCCCC--------cEEEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEEC
Confidence 7899999999775 2221111 11 23567899999999764 3311 112445443
Q ss_pred CccceeecCCCceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcCCCCEEEEeC-CCcEEEEEcc-CCcE-E--
Q 003171 271 AIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDAR-TREL-L-- 345 (842)
Q Consensus 271 t~~~~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s-~~tI~lWD~~-tg~~-l-- 345 (842)
......... .. ......++.++++..+++.+ ...|.+||+. +|++ .
T Consensus 160 ~~g~~~~~~-------------------~~----------~~~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~ 210 (296)
T 3e5z_A 160 PDGTLSAPI-------------------RD----------RVKPNGLAFLPSGNLLVSDTGDNATHRYCLNARGETEYQG 210 (296)
T ss_dssp TTSCEEEEE-------------------CC----------CSSEEEEEECTTSCEEEEETTTTEEEEEEECSSSCEEEEE
T ss_pred CCCCEEEee-------------------cC----------CCCCccEEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCC
Confidence 211100000 00 11234567777777766555 3578899876 4443 1
Q ss_pred EEeecCCceEeeeecccCCCcccccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEeecCccccCCCceEEE
Q 003171 346 KVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEAL 425 (842)
Q Consensus 346 ~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~al 425 (842)
..+ .. ....+..+
T Consensus 211 ~~~------------------------------~~-------------------------------------~~~~p~~i 223 (296)
T 3e5z_A 211 VHF------------------------------TV-------------------------------------EPGKTDGL 223 (296)
T ss_dssp EEE------------------------------CC-------------------------------------SSSCCCSE
T ss_pred eEe------------------------------eC-------------------------------------CCCCCCeE
Confidence 111 00 00112246
Q ss_pred EECCCCcEEEEeCCCeEEEEcCCCCeeeeeecCCccEEEEEe---cCCEEEEEecCcEEEEEeCCCcccc
Q 003171 426 TTSIDGMIWTGGANGLLLQWDPNGNRLQDFQYLPFAVQCLCT---FGSQIWVGYMNGIVQVLDLEGNLLG 492 (842)
Q Consensus 426 ~~s~dg~l~Sgs~DgtIrlWD~~g~~l~~l~~H~~~V~sls~---dG~~LasGs~DgtIrlWD~~g~~i~ 492 (842)
+++++|.||.++ ++.|.+||.+|+.+..+..+.. +.++++ +++.||+++.++ |..++.+.+.++
T Consensus 224 ~~d~~G~l~v~~-~~~v~~~~~~g~~~~~~~~~~~-~~~~~f~~~d~~~L~v~t~~~-l~~~~~~~~~~~ 290 (296)
T 3e5z_A 224 RVDAGGLIWASA-GDGVHVLTPDGDELGRVLTPQT-TSNLCFGGPEGRTLYMTVSTE-FWSIETNVRGLE 290 (296)
T ss_dssp EEBTTSCEEEEE-TTEEEEECTTSCEEEEEECSSC-CCEEEEESTTSCEEEEEETTE-EEEEECSCCBCC
T ss_pred EECCCCCEEEEc-CCeEEEECCCCCEEEEEECCCC-ceeEEEECCCCCEEEEEcCCe-EEEEEccccccc
Confidence 788999999888 7889999999999998887777 777755 567999988764 445566544443
|
| >1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A | Back alignment and structure |
|---|
Probab=99.11 E-value=1.4e-08 Score=105.83 Aligned_cols=230 Identities=12% Similarity=0.014 Sum_probs=140.4
Q ss_pred CeEEEEEcCCCCEEE-EEeCCCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCCCEEEeeCCCcEEEEeCCC
Q 003171 193 SVMCMVGDEASGVVW-SGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGDLWSGSEGGGIKIWPWEA 271 (842)
Q Consensus 193 ~V~~la~dpdg~~La-SGs~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~L~SgS~DgtIrvWd~~t 271 (842)
...+++++++|++.+ +.+.++.|.+|+..+. ........+...+.+|+++++|+||.+..++.|.+||.++
T Consensus 25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~--------~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~i~~~d~~~ 96 (270)
T 1rwi_B 25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGST--------GTTVLPFNGLYQPQGLAVDGAGTVYVTDFNNRVVTLAAGS 96 (270)
T ss_dssp CEEEEEECTTCCEEEEECSSSCEEEEECC-------------EECCCCSCCSCCCEEECTTCCEEEEETTTEEEEECTTC
T ss_pred CccceEECCCCCEEEEccCCCCcEEEecCCCc--------ccceEeeCCcCCcceeEECCCCCEEEEcCCCEEEEEeCCC
Confidence 577899999998666 4477899999997664 1111112344567899999999987655588999999865
Q ss_pred ccceeecCCCceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcCCCCEEEEeC--CCcEEEEEccCCcEEEEee
Q 003171 272 IEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG--FLSFALWDARTRELLKVFN 349 (842)
Q Consensus 272 ~~~~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s--~~tI~lWD~~tg~~l~~l~ 349 (842)
.... .... .+ ......++.++++. +|.+. .+.|.+||..+......
T Consensus 97 ~~~~-~~~~-----------------------~~-----~~~p~~i~~~~~g~-l~v~~~~~~~i~~~~~~~~~~~~~-- 144 (270)
T 1rwi_B 97 NNQT-VLPF-----------------------DG-----LNYPEGLAVDTQGA-VYVADRGNNRVVKLAAGSKTQTVL-- 144 (270)
T ss_dssp SCCE-ECCC-----------------------CS-----CSSEEEEEECTTCC-EEEEEGGGTEEEEECTTCCSCEEC--
T ss_pred ceEe-eeec-----------------------CC-----cCCCcceEECCCCC-EEEEECCCCEEEEEECCCceeEee--
Confidence 3211 0000 00 12345677776554 55442 34566665433221000
Q ss_pred cCCceEeeeecccCCCcccccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEeecCccccCCCceEEEEECC
Q 003171 350 IDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSI 429 (842)
Q Consensus 350 ~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~al~~s~ 429 (842)
. ......+..+++++
T Consensus 145 -----------------------------~------------------------------------~~~~~~p~~i~~~~ 159 (270)
T 1rwi_B 145 -----------------------------P------------------------------------FTGLNDPDGVAVDN 159 (270)
T ss_dssp -----------------------------C------------------------------------CCSCCSCCCEEECT
T ss_pred -----------------------------c------------------------------------cccCCCceeEEEeC
Confidence 0 00011233577888
Q ss_pred CCcEEEEe-CCCeEEEEcCCCCeeee-eecCCccEEEEEecCC-EEEEEe-cCcEEEEEeCCCcccccc-cccccCEEEE
Q 003171 430 DGMIWTGG-ANGLLLQWDPNGNRLQD-FQYLPFAVQCLCTFGS-QIWVGY-MNGIVQVLDLEGNLLGGW-VAHSSPVIKM 504 (842)
Q Consensus 430 dg~l~Sgs-~DgtIrlWD~~g~~l~~-l~~H~~~V~sls~dG~-~LasGs-~DgtIrlWD~~g~~i~~l-~gH~~~V~sl 504 (842)
+|++|.+. .++.|.+||..+..... ...+...+.+|+.+.. .||.+. .++.|.+||..++..... ..+...+.+|
T Consensus 160 ~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~p~~i 239 (270)
T 1rwi_B 160 SGNVYVTDTDNNRVVKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTVLPFTGLNTPLAV 239 (270)
T ss_dssp TCCEEEEEGGGTEEEEECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEETTTSCEEEECTTCSCCEECCCCSCSCEEEE
T ss_pred CCCEEEEECCCCEEEEEecCCCceEeecccCCCCceEEEECCCCCEEEEECCCCcEEEEcCCCCcceeeccCCCCCceeE
Confidence 88887665 46789999996543332 2233356778877532 555555 578999999986543332 2344568888
Q ss_pred Ee--CCCEEEEEcCCCCeeeccccC
Q 003171 505 AV--GAGYIFTLANHGGIRGWNVTS 527 (842)
Q Consensus 505 a~--dg~~l~S~S~DgtIrvWd~~~ 527 (842)
+. +|+..++.+.++.|+++++..
T Consensus 240 ~~~~~g~l~v~~~~~~~v~~~~~~~ 264 (270)
T 1rwi_B 240 AVDSDRTVYVADRGNDRVVKLTSLE 264 (270)
T ss_dssp EECTTCCEEEEEGGGTEEEEECCCG
T ss_pred EECCCCCEEEEECCCCEEEEEcCCC
Confidence 75 577777888999999998654
|
| >3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.10 E-value=7.1e-08 Score=117.55 Aligned_cols=323 Identities=13% Similarity=0.173 Sum_probs=191.5
Q ss_pred ceeEEEEecCC-EEEEecCCCEEEEeCCCCccccccccccccCCCCCCCCCCeeeeeecCCCeEEEEEcCCCCEEEEEeC
Q 003171 133 CFLRTIVCTEE-QLWAGGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGHR 211 (842)
Q Consensus 133 ~~~~~l~~~~~-~l~~~~D~~vrvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~V~~la~dpdg~~LaSGs~ 211 (842)
..+++|..+.+ .||++++++|.+||..+...... .. ....+ ..+. ...|.++..+++ +.||.|+.
T Consensus 211 ~~i~~i~~d~~g~lwigt~~Gl~~~d~~~~~~~~~--------~~--~~~~~--~~l~-~~~i~~i~~d~~-g~lWigt~ 276 (781)
T 3v9f_A 211 NDVRCIYKDTNGNIWIGTSKGLALFNANTETFTNF--------HN--NPGNI--HGAL-SSYIFSIKQLKD-NKLWIATE 276 (781)
T ss_dssp SSEEEEEECTTCCEEEEETTEEEEEETTTTEEEC-----------------------C-CCCEEEEEECTT-SEEEEEES
T ss_pred CceeEEEEcCCCCEEEEeCCcHheECCCCCcEEEE--------Ec--CCCcc--cccc-CceEEEEEECCC-CCEEEEeC
Confidence 35778887755 89999888999999864321110 00 00000 1122 567999999865 56899998
Q ss_pred CCcEEEEECCCCccCCCCCcceeEE--------e----cccCCcEEEEEEecCCCEEEeeCCCcEEEEeCCCccceeecC
Q 003171 212 DGRIMCWKMNARLLDSDDGFGEVLS--------W----QAHRGPVLSLCISSYGDLWSGSEGGGIKIWPWEAIEKALSLK 279 (842)
Q Consensus 212 DGtIrlWdl~~g~~~~~~~~~~~~~--------l----~gH~~~V~slafs~dG~L~SgS~DgtIrvWd~~t~~~~l~~~ 279 (842)
.+-+.+++..++. +..... . .-+...|.+|..+++|.||.|+.++.|..++..+... ...
T Consensus 277 ~~Gl~~~~~~~~~------~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D~~g~lWigt~~~Gl~~~~~~~~~~--~~~ 348 (781)
T 3v9f_A 277 LNGIMILDLQQNQ------FLLPEQIRFEFIREGDNNYSLSNASARYIFQDSFNNIWIGTWGGGINFISNAPPTF--HTW 348 (781)
T ss_dssp SSCEEEEETTCC---------------CEEECBCSSTTSBSSSCEEEEEECSSCCEEEEEBSSCEEEECSSCCSC--EEE
T ss_pred CCCeEEECCCCCe------eeeeeccccccccCCCCCCCCCCCeEEEEEEeCCCCEEEEecCCeEEEeCCCCCcc--eee
Confidence 5667788887641 111110 0 1134679999999999999999999999998754321 110
Q ss_pred CCceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcCCCCEEEEeC-CCcEEEEEccCCcEEEEeecCCceEeee
Q 003171 280 PEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVFNIDGQIENRV 358 (842)
Q Consensus 280 ~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s-~~tI~lWD~~tg~~l~~l~~~~~~~~~~ 358 (842)
.... .......+....|.+++.+. ...||.++ .++|.+||..++... .+....
T Consensus 349 ~~~~------------------~~~~~~~l~~~~v~~i~~d~-~g~lWigt~~~Gl~~~~~~~~~~~-~~~~~~------ 402 (781)
T 3v9f_A 349 SYSP------------------TQMNESSLSNKVVSSVCDDG-QGKLWIGTDGGGINVFENGKRVAI-YNKENR------ 402 (781)
T ss_dssp C----------------------CCCSSCCSSSCEEEEEECT-TSCEEEEEBSSCEEEEETTEEEEE-CC----------
T ss_pred ccCc------------------cccccCCCCCcceEEEEEcC-CCCEEEEeCCCcEEEEECCCCeEE-EccCCC------
Confidence 0000 00000011245677887764 45799988 578999998776542 111000
Q ss_pred ecccCCCcccccceEEEEEecCCCCccceeeeEe-ecCcceEEecC-CcEEEEeec-Ccccc------CCCceEEEEECC
Q 003171 359 DMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFF-QRSRNAIMGAA-DAVRRVAAK-GGFGD------DNRRTEALTTSI 429 (842)
Q Consensus 359 ~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~-~~~~~~~~g~~-~~v~~v~~~-g~~~~------~~~~v~al~~s~ 429 (842)
.++. ..+ ..+. +.....|+|+. .|+.++... +.+.. ....|.++...+
T Consensus 403 ~~~~-------~~v----------------~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~ 459 (781)
T 3v9f_A 403 ELLS-------NSV----------------LCSLKDSEGNLWFGTYLGNISYYNTRLKKFQIIELEKNELLDVRVFYEDK 459 (781)
T ss_dssp -CCC-------SBE----------------EEEEECTTSCEEEEETTEEEEEECSSSCEEEECCSTTTCCCCEEEEEECT
T ss_pred CCCC-------cce----------------EEEEECCCCCEEEEeccCCEEEEcCCCCcEEEeccCCCCCCeEEEEEECC
Confidence 0000 000 0111 11235678875 577776542 33321 235688999999
Q ss_pred CCcEEEEeCCCeEEEEcCC-CCeeeeeecC-----CccEEEEEecCC-EEEEEecCcEEEEEeCCCccccccc----ccc
Q 003171 430 DGMIWTGGANGLLLQWDPN-GNRLQDFQYL-----PFAVQCLCTFGS-QIWVGYMNGIVQVLDLEGNLLGGWV----AHS 498 (842)
Q Consensus 430 dg~l~Sgs~DgtIrlWD~~-g~~l~~l~~H-----~~~V~sls~dG~-~LasGs~DgtIrlWD~~g~~i~~l~----gH~ 498 (842)
+|.||.|+..| |.++|.. ++........ ...|.++..|.+ .||.|+.++.|..+|.+++....+. ...
T Consensus 460 ~g~lwigt~~G-l~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~l~~ 538 (781)
T 3v9f_A 460 NKKIWIGTHAG-VFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDSEGRFWIGTFGGGVGIYTPDMQLVRKFNQYEGFCS 538 (781)
T ss_dssp TSEEEEEETTE-EEEEESSSSSCCEEECTTTSSCSCSCEEEEEECTTCCEEEEESSSCEEEECTTCCEEEEECTTTTCSC
T ss_pred CCCEEEEECCc-eEEEeCCCCeEEecccCcccccccceeEEEEEcCCCCEEEEEcCCCEEEEeCCCCeEEEccCCCCCCC
Confidence 99999999855 8899984 4432222112 467999988743 7999998667888998754333222 235
Q ss_pred cCEEEEEeCCCEEEEEcCCCCe-eeccccC
Q 003171 499 SPVIKMAVGAGYIFTLANHGGI-RGWNVTS 527 (842)
Q Consensus 499 ~~V~sla~dg~~l~S~S~DgtI-rvWd~~~ 527 (842)
..|.+|..|.+..++.++.+++ ..||...
T Consensus 539 ~~i~~i~~d~~g~lWi~T~~Glv~~~d~~~ 568 (781)
T 3v9f_A 539 NTINQIYRSSKGQMWLATGEGLVCFPSARN 568 (781)
T ss_dssp SCEEEEEECTTSCEEEEETTEEEEESCTTT
T ss_pred CeeEEEEECCCCCEEEEECCCceEEECCCC
Confidence 6799998865554555555666 8887543
|
| >3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=99.10 E-value=1.6e-09 Score=116.53 Aligned_cols=290 Identities=12% Similarity=0.084 Sum_probs=173.6
Q ss_pred EEec-CCEEEEec-CCCEEEEeCCCCccccccccccccCCCCCCCCCCeeeeeecCCCeEEEEEcCCCCEEEEEeCCCcE
Q 003171 138 IVCT-EEQLWAGG-ENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGHRDGRI 215 (842)
Q Consensus 138 l~~~-~~~l~~~~-D~~vrvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~V~~la~dpdg~~LaSGs~DGtI 215 (842)
++.+ ++.+|+++ +++|..|| .+...... ..+. ...+.+++++++| .||.|+.+ +
T Consensus 25 ~~~d~~g~l~v~t~~~~l~~~d-~~g~~~~~-------------------~~~~-~~~~~~~~~~~~g-~l~v~t~~--l 80 (330)
T 3hxj_A 25 PILAKNGTIYLGSSNKNLYAIN-TDGSVKWF-------------------FKSG-EIIECRPSIGKDG-TIYFGSDK--V 80 (330)
T ss_dssp CEECTTSCEECSSTTTTTEEEC-TTSCEEES-------------------SCGG-GEEEECCEETTTT-EECCSSCE--E
T ss_pred ceEccCCeEEEEcCCCEEEEEC-CCCcEEEE-------------------EecC-CCcccceEEecCC-cEEEecCc--E
Confidence 3453 55899976 78999999 65443211 0011 3345677777654 67777776 8
Q ss_pred EEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCCCEEEeeCCCcEEEEeCCCccceeecCCCceeeeEEEEeecee
Q 003171 216 MCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGDLWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYI 295 (842)
Q Consensus 216 rlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~L~SgS~DgtIrvWd~~t~~~~l~~~~~~~~~~~l~~~~s~~ 295 (842)
..+|. ++ +....+..+.....+.++. +|.||.|+.++.|..+|.. ++........
T Consensus 81 ~~~d~-~g--------~~~~~~~~~~~~~~~~~~~-~~~l~v~t~~~~l~~~d~~-g~~~~~~~~~-------------- 135 (330)
T 3hxj_A 81 YAINP-DG--------TEKWRFDTKKAIVSDFTIF-EDILYVTSMDGHLYAINTD-GTEKWRFKTK-------------- 135 (330)
T ss_dssp EEECC-CG--------GGGGGSCC-----CCEEEE-TTEEEEECTTSEEEEECTT-SCEEEEEECS--------------
T ss_pred EEECC-CC--------cEEEEEECCCCcccCceEE-CCEEEEEecCCEEEEEcCC-CCEEEEEcCC--------------
Confidence 88886 43 2222222222223334444 7789999999999999986 3322221110
Q ss_pred ecccceeccceeeeecCCEEEEEEcCCCCEEEEeCC-CcEEEEEccCCcEEEEeecCCceEeeeecccCCCcccccceEE
Q 003171 296 DLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGF-LSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKT 374 (842)
Q Consensus 296 ~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s~-~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~ 374 (842)
...+..++.++ +..||.++. +.|..+|.. |+.+..+....... ....
T Consensus 136 ---------------~~~~~~~~~~~-~g~l~vgt~~~~l~~~d~~-g~~~~~~~~~~~~~--------~~~~------- 183 (330)
T 3hxj_A 136 ---------------KAIYATPIVSE-DGTIYVGSNDNYLYAINPD-GTEKWRFKTNDAIT--------SAAS------- 183 (330)
T ss_dssp ---------------SCCCSCCEECT-TSCEEEECTTSEEEEECTT-SCEEEEEECSSCCC--------SCCE-------
T ss_pred ---------------CceeeeeEEcC-CCEEEEEcCCCEEEEECCC-CCEeEEEecCCCce--------eeeE-------
Confidence 00111223333 445777764 789999998 77765554221110 0000
Q ss_pred EEEecCCCCccceeeeEeecCcceEEecCCcEEEEeecCcc----ccCCCceEEEEECCCCcEEEEeCCCeEEEEcCCCC
Q 003171 375 KIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGF----GDDNRRTEALTTSIDGMIWTGGANGLLLQWDPNGN 450 (842)
Q Consensus 375 ~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~----~~~~~~v~al~~s~dg~l~Sgs~DgtIrlWD~~g~ 450 (842)
.+....+++++ .++.++...|.. ......+.+++.+++|.||.++.++.|..+|.+|+
T Consensus 184 -----------------~d~~g~l~v~t-~~l~~~d~~g~~~~~~~~~~~~~~~~~~~~~g~l~v~t~~~gl~~~~~~g~ 245 (330)
T 3hxj_A 184 -----------------IGKDGTIYFGS-DKVYAINPDGTEKWNFYAGYWTVTRPAISEDGTIYVTSLDGHLYAINPDGT 245 (330)
T ss_dssp -----------------ECTTCCEEEES-SSEEEECTTSCEEEEECCSSCCCSCCEECTTSCEEEEETTTEEEEECTTSC
T ss_pred -----------------EcCCCEEEEEe-CEEEEECCCCcEEEEEccCCcceeceEECCCCeEEEEcCCCeEEEECCCCC
Confidence 00112345555 566655533321 11223466778888999999998888999998888
Q ss_pred eeeeeecCCccEEEEEec-CCEEEEEecCcEEEEEeCCCcccccccccccCEEEEEe-CCCEEEEEcCCCCeeecccc
Q 003171 451 RLQDFQYLPFAVQCLCTF-GSQIWVGYMNGIVQVLDLEGNLLGGWVAHSSPVIKMAV-GAGYIFTLANHGGIRGWNVT 526 (842)
Q Consensus 451 ~l~~l~~H~~~V~sls~d-G~~LasGs~DgtIrlWD~~g~~i~~l~gH~~~V~sla~-dg~~l~S~S~DgtIrvWd~~ 526 (842)
.+..+......+.++..+ +..||.|+.+|.|..+|.+|+.+..+......+.++.. .+..++-++.+|.+++-...
T Consensus 246 ~~~~~~~~~~~~~~~~~~~~g~l~v~t~~ggl~~~d~~g~~~~~~~~~~~~~~~~~~d~~g~l~~gt~~G~~~~~~~~ 323 (330)
T 3hxj_A 246 EKWRFKTGKRIESSPVIGNTDTIYFGSYDGHLYAINPDGTEKWNFETGSWIIATPVIDENGTIYFGTRNGKFYALFNL 323 (330)
T ss_dssp EEEEEECSSCCCSCCEECTTSCEEEECTTCEEEEECTTSCEEEEEECSSCCCSCCEECTTCCEEEECTTSCEEEEEC-
T ss_pred EeEEeeCCCCccccceEcCCCeEEEecCCCCEEEECCCCcEEEEEEcCCccccceEEcCCCEEEEEcCCCeEEEEecc
Confidence 777666544444445555 56899999999999999877766655555566777666 34567778889999876643
|
| >2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A* | Back alignment and structure |
|---|
Probab=99.08 E-value=2.5e-08 Score=120.24 Aligned_cols=233 Identities=11% Similarity=-0.010 Sum_probs=137.9
Q ss_pred CeEEEEEcCCCCEEEEEeCCC-----cEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCCC-EEEeeCCCc---
Q 003171 193 SVMCMVGDEASGVVWSGHRDG-----RIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGG--- 263 (842)
Q Consensus 193 ~V~~la~dpdg~~LaSGs~DG-----tIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~Dgt--- 263 (842)
.+..+++||||++||.++.++ +|++||+.++ +.......+. .+.+++|+|||+ |+.++.|+.
T Consensus 126 ~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg--------~~~~~~~~~~-~~~~~~wspDg~~l~~~~~~~~~~~ 196 (710)
T 2xdw_A 126 ALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGA--------KELPDVLERV-KFSCMAWTHDGKGMFYNAYPQQDGK 196 (710)
T ss_dssp EEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTT--------EEEEEEEEEE-CSCCEEECTTSSEEEEEECCCCSSC
T ss_pred EEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCC--------CCCcccccCc-ccceEEEEeCCCEEEEEEECCcccc
Confidence 578899999999998877654 8999999997 3332222222 267899999998 777777766
Q ss_pred -------------EEEEeCCCccce--eecCCCceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcCCCCEEEE
Q 003171 264 -------------IKIWPWEAIEKA--LSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWS 328 (842)
Q Consensus 264 -------------IrvWd~~t~~~~--l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s 328 (842)
|++|++.+.... +.+.... + ......+..++++..|+.
T Consensus 197 ~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~-----------------~----------~~~~~~~~~SpDg~~l~~ 249 (710)
T 2xdw_A 197 SDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPD-----------------E----------PKWMGGAELSDDGRYVLL 249 (710)
T ss_dssp CSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTT-----------------C----------TTCEEEEEECTTSCEEEE
T ss_pred ccccccccCCCCEEEEEECCCCcccceEEeccCC-----------------C----------CeEEEEEEEcCCCCEEEE
Confidence 999999764321 1111100 0 011223444555554443
Q ss_pred eC------CCcEEEEEccC------Cc-EEEEeecCCceEeeeecccCCCcccccceEEEEEecCCCCccceeeeEeecC
Q 003171 329 AG------FLSFALWDART------RE-LLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRS 395 (842)
Q Consensus 329 ~s------~~tI~lWD~~t------g~-~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~ 395 (842)
.+ ...|.+||+.+ +. ..+.+..+.
T Consensus 250 ~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~l~~~~------------------------------------------- 286 (710)
T 2xdw_A 250 SIREGCDPVNRLWYCDLQQESNGITGILKWVKLIDNF------------------------------------------- 286 (710)
T ss_dssp EEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEECSS-------------------------------------------
T ss_pred EEEccCCCccEEEEEECcccccccCCccceEEeeCCC-------------------------------------------
Confidence 32 23577888765 32 111111100
Q ss_pred cceEEecCCcEEEEeecCccccCCCceEEEEECCCCc-EEEEeC----CCeEEEEcCC-CC--eeeeeecCCc--cEEEE
Q 003171 396 RNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGM-IWTGGA----NGLLLQWDPN-GN--RLQDFQYLPF--AVQCL 465 (842)
Q Consensus 396 ~~~~~g~~~~v~~v~~~g~~~~~~~~v~al~~s~dg~-l~Sgs~----DgtIrlWD~~-g~--~l~~l~~H~~--~V~sl 465 (842)
..+.. .++++|. |+..+. ++.|.+||+. ++ ..+++..|.. .|.++
T Consensus 287 ------------------------~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~ 341 (710)
T 2xdw_A 287 ------------------------EGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWV 341 (710)
T ss_dssp ------------------------SSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEE
T ss_pred ------------------------CcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCCeEEEE
Confidence 00011 1334443 444333 2368999984 43 3466666655 56666
Q ss_pred Eec-C-CEEEEEecCcE--EEEEeC-CCcccccccccccCEEEEEe--CCCEEE-E---EcCCCCeeeccccCCC
Q 003171 466 CTF-G-SQIWVGYMNGI--VQVLDL-EGNLLGGWVAHSSPVIKMAV--GAGYIF-T---LANHGGIRGWNVTSPG 529 (842)
Q Consensus 466 s~d-G-~~LasGs~Dgt--IrlWD~-~g~~i~~l~gH~~~V~sla~--dg~~l~-S---~S~DgtIrvWd~~~~~ 529 (842)
+.. + ..+++...|+. |++||+ +|+.++.+..|.+.|.+++. +++.++ + ..+.++|.+||+.+..
T Consensus 342 ~~~~~~~lv~~~~~~g~~~l~~~~~~~g~~~~~l~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~ 416 (710)
T 2xdw_A 342 ACVRSNFLVLCYLHDVKNTLQLHDLATGALLKIFPLEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEE 416 (710)
T ss_dssp EEETTTEEEEEEEETTEEEEEEEETTTCCEEEEECCCSSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred EEEcCCEEEEEEEECCEEEEEEEECCCCCEEEecCCCCceEEEEecCCCCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence 543 4 46666667774 566787 57777778888778888774 565554 3 3356789999986643
|
| >2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.06 E-value=9.5e-09 Score=111.36 Aligned_cols=99 Identities=13% Similarity=0.109 Sum_probs=67.3
Q ss_pred eEEEEECCCCcEEEEeCC------C---eEEEEcCCCCeeeeeecCCccEEEEEecCCEEEEEecC--------cEEEEE
Q 003171 422 TEALTTSIDGMIWTGGAN------G---LLLQWDPNGNRLQDFQYLPFAVQCLCTFGSQIWVGYMN--------GIVQVL 484 (842)
Q Consensus 422 v~al~~s~dg~l~Sgs~D------g---tIrlWD~~g~~l~~l~~H~~~V~sls~dG~~LasGs~D--------gtIrlW 484 (842)
+..++++|||.+++++.+ . .|.++| +|+. +.+..+ ..+.++++||++|+.++.+ ..|.+|
T Consensus 173 ~~~~~~spdg~~~~~~~~~~~~~~~~~~~l~~~d-~~~~-~~l~~~-~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~ 249 (347)
T 2gop_A 173 FSSGIWHRDKIVVNVPHREIIPQYFKFWDIYIWE-DGKE-EKMFEK-VSFYAVDSDGERILLYGKPEKKYMSEHNKLYIY 249 (347)
T ss_dssp TCEEEEETTEEEEEEECCCSSCCSSCCEEEEEEE-TTEE-EEEEEE-ESEEEEEECSSCEEEEECCSSSCCCSSCEEEEE
T ss_pred cccccCCCCeEEEEEecccccccccccccEEEeC-CCce-EEeccC-cceeeECCCCCEEEEEEccccCCccccceEEEE
Confidence 345677788833444433 1 355555 5543 444445 6677778999988877743 479999
Q ss_pred eCCCcccccccccccCEEE-EEe-CCCEEEEEcCCCCeeecccc
Q 003171 485 DLEGNLLGGWVAHSSPVIK-MAV-GAGYIFTLANHGGIRGWNVT 526 (842)
Q Consensus 485 D~~g~~i~~l~gH~~~V~s-la~-dg~~l~S~S~DgtIrvWd~~ 526 (842)
| .++......+|...|.. +.+ |+ .+++++.|+.+++| +.
T Consensus 250 d-~~~~~~l~~~~~~~~~~~~~~sdg-~~~~~~~~~~~~l~-~~ 290 (347)
T 2gop_A 250 D-GKEVMGILDEVDRGVGQAKIKDGK-VYFTLFEEGSVNLY-IW 290 (347)
T ss_dssp C-SSCEEESSTTCCSEEEEEEEETTE-EEEEEEETTEEEEE-EE
T ss_pred C-CCceEeccccCCcccCCccEEcCc-EEEEEecCCcEEEE-Ec
Confidence 9 66665555677777875 665 45 77899999999999 86
|
| >3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis} | Back alignment and structure |
|---|
Probab=99.06 E-value=2.7e-08 Score=108.29 Aligned_cols=257 Identities=11% Similarity=-0.023 Sum_probs=153.5
Q ss_pred CCCEEEEeCCCCccccccccccccCCCCCCCCCCeeeeeecCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCC
Q 003171 150 ENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDD 229 (842)
Q Consensus 150 D~~vrvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~V~~la~dpdg~~LaSGs~DGtIrlWdl~~g~~~~~~ 229 (842)
+++|.+||.++...... + . .+ .+..+ + ......++++ ++++.++...+++|.+||..++
T Consensus 16 ~~~l~~~d~~t~~~~~~-i---~---~~-~n~~~----l--g~~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~------ 74 (328)
T 3dsm_A 16 NATLSYYDPATCEVENE-V---F---YR-ANGFK----L--GDVAQSMVIR-DGIGWIVVNNSHVIFAIDINTF------ 74 (328)
T ss_dssp CBEEEEEETTTTEEECS-H---H---HH-HHSSC----C--BSCEEEEEEE-TTEEEEEEGGGTEEEEEETTTC------
T ss_pred CceEEEEECCCCEEhhh-h---H---hh-hcCcc----c--CccceEEEEE-CCEEEEEEcCCCEEEEEECccc------
Confidence 78999999987543211 0 0 00 00000 1 2235667775 4555555666799999999987
Q ss_pred CcceeEEecccCCcEEEEEEecCCCEEEee-CCCcEEEEeCCCccceeecCCCceeeeEEEEeeceeecccceeccceee
Q 003171 230 GFGEVLSWQAHRGPVLSLCISSYGDLWSGS-EGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSS 308 (842)
Q Consensus 230 ~~~~~~~l~gH~~~V~slafs~dG~L~SgS-~DgtIrvWd~~t~~~~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~ 308 (842)
+.+.++. .......|+++++|+|+.+. .+++|.+||+.+.+.......... ...
T Consensus 75 --~~~~~i~-~~~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~----------------~~~------ 129 (328)
T 3dsm_A 75 --KEVGRIT-GFTSPRYIHFLSDEKAYVTQIWDYRIFIINPKTYEITGYIECPDM----------------DME------ 129 (328)
T ss_dssp --CEEEEEE-CCSSEEEEEEEETTEEEEEEBSCSEEEEEETTTTEEEEEEECTTC----------------CTT------
T ss_pred --EEEEEcC-CCCCCcEEEEeCCCeEEEEECCCCeEEEEECCCCeEEEEEEcCCc----------------ccc------
Confidence 5555554 34568899999999987555 899999999977532211110000 000
Q ss_pred eecCCEEEEEEcCCCCEEEEeC---CCcEEEEEccCCcEEEEeecCCceEeeeecccCCCcccccceEEEEEecCCCCcc
Q 003171 309 ILTSDIKNLLSDHSRAKVWSAG---FLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKA 385 (842)
Q Consensus 309 ~~s~~v~~las~~~~~~v~s~s---~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~ 385 (842)
......++. .+.++|.+. +++|.++|+.++++++.+.....
T Consensus 130 --~~~p~~i~~--~~~~lyv~~~~~~~~v~viD~~t~~~~~~i~~g~~-------------------------------- 173 (328)
T 3dsm_A 130 --SGSTEQMVQ--YGKYVYVNCWSYQNRILKIDTETDKVVDELTIGIQ-------------------------------- 173 (328)
T ss_dssp --TCBCCCEEE--ETTEEEEEECTTCCEEEEEETTTTEEEEEEECSSC--------------------------------
T ss_pred --CCCcceEEE--ECCEEEEEcCCCCCEEEEEECCCCeEEEEEEcCCC--------------------------------
Confidence 000112233 244555553 46899999999887655421000
Q ss_pred ceeeeEeecCcceEEecCCcEEEEeecCccccCCCceEEEEECCCCcEEEEeCC-----------CeEEEEcC-CCCeee
Q 003171 386 QSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGMIWTGGAN-----------GLLLQWDP-NGNRLQ 453 (842)
Q Consensus 386 ~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~al~~s~dg~l~Sgs~D-----------gtIrlWD~-~g~~l~ 453 (842)
...++++++|++|.++.. +.|.+||. +++.++
T Consensus 174 ------------------------------------p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~ 217 (328)
T 3dsm_A 174 ------------------------------------PTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEK 217 (328)
T ss_dssp ------------------------------------BCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEE
T ss_pred ------------------------------------ccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEE
Confidence 012456677887665542 68999999 577776
Q ss_pred eeecC-CccEEEEEe--cCCEEEEEecCcEEEEEeCC-Ccccc-c-ccccccCEEEEEeC---CCEEEEE----cCCCCe
Q 003171 454 DFQYL-PFAVQCLCT--FGSQIWVGYMNGIVQVLDLE-GNLLG-G-WVAHSSPVIKMAVG---AGYIFTL----ANHGGI 520 (842)
Q Consensus 454 ~l~~H-~~~V~sls~--dG~~LasGs~DgtIrlWD~~-g~~i~-~-l~gH~~~V~sla~d---g~~l~S~----S~DgtI 520 (842)
++... ......+++ +|++|+++.. +|.+||++ ++... . +..+.....+|+.+ +...++. ..+++|
T Consensus 218 ~~~~~~g~~p~~la~~~d~~~lyv~~~--~v~~~d~~t~~~~~~~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V 295 (328)
T 3dsm_A 218 QFKFKLGDWPSEVQLNGTRDTLYWINN--DIWRMPVEADRVPVRPFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIV 295 (328)
T ss_dssp EEECCTTCCCEEEEECTTSCEEEEESS--SEEEEETTCSSCCSSCSBCCCSSCEEEEEECTTTCCEEEEECTTSSSEEEE
T ss_pred EEecCCCCCceeEEEecCCCEEEEEcc--EEEEEECCCCceeeeeeecCCCCceEEEEEcCCCCeEEEEcccccccCCEE
Confidence 66532 234566654 5889988654 89999987 45432 2 22224567788753 3444555 578899
Q ss_pred eecccc
Q 003171 521 RGWNVT 526 (842)
Q Consensus 521 rvWd~~ 526 (842)
.+||..
T Consensus 296 ~v~d~~ 301 (328)
T 3dsm_A 296 YRYSPQ 301 (328)
T ss_dssp EEECTT
T ss_pred EEECCC
Confidence 999854
|
| >2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* | Back alignment and structure |
|---|
Probab=99.06 E-value=2.6e-07 Score=97.08 Aligned_cols=229 Identities=12% Similarity=0.127 Sum_probs=143.6
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCCCEEEee-CCCcEEEEeC
Q 003171 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGDLWSGS-EGGGIKIWPW 269 (842)
Q Consensus 191 ~~~V~~la~dpdg~~LaSGs~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~L~SgS-~DgtIrvWd~ 269 (842)
...+.+++++++|++.++...++.|.+||.. +. ........+...+.+|+++++|.+|.+. .++.|..|+.
T Consensus 14 ~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~-------~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~ 85 (299)
T 2z2n_A 14 DTGPYGITVSDKGKVWITQHKANMISCINLD-GK-------ITEYPLPTPDAKVMCLTISSDGEVWFTENAANKIGRITK 85 (299)
T ss_dssp SCCEEEEEECTTSCEEEEETTTTEEEEECTT-CC-------EEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT
T ss_pred CCCccceEECCCCCEEEEecCCCcEEEEcCC-CC-------eEEecCCcccCceeeEEECCCCCEEEeCCCCCeEEEECC
Confidence 3478999999998866665558899999987 41 1122223455789999999999987554 4788999987
Q ss_pred CCccceeecCCCceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcCCCCEEEEeC--CCcEEEEEccCCcEEEE
Q 003171 270 EAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG--FLSFALWDARTRELLKV 347 (842)
Q Consensus 270 ~t~~~~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s--~~tI~lWD~~tg~~l~~ 347 (842)
+.....+... . .......++.++++ .+|.+. .+.|.+||. +++....
T Consensus 86 ~g~~~~~~~~-------------------~----------~~~~~~~i~~~~~g-~l~v~~~~~~~i~~~d~-~g~~~~~ 134 (299)
T 2z2n_A 86 KGIIKEYTLP-------------------N----------PDSAPYGITEGPNG-DIWFTEMNGNRIGRITD-DGKIREY 134 (299)
T ss_dssp TSCEEEEECS-------------------S----------TTCCEEEEEECTTS-CEEEEETTTTEEEEECT-TCCEEEE
T ss_pred CCcEEEEeCC-------------------C----------cCCCceeeEECCCC-CEEEEecCCceEEEECC-CCCEEEe
Confidence 5211111000 0 01235567776655 455443 356888887 5543211
Q ss_pred eecCCceEeeeecccCCCcccccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEeecCccccCCCceEEEEE
Q 003171 348 FNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTT 427 (842)
Q Consensus 348 l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~al~~ 427 (842)
. . ......+..+++
T Consensus 135 ~-~-----------------------------------------------------------------~~~~~~~~~i~~ 148 (299)
T 2z2n_A 135 E-L-----------------------------------------------------------------PNKGSYPSFITL 148 (299)
T ss_dssp E-C-----------------------------------------------------------------SSTTCCEEEEEE
T ss_pred c-C-----------------------------------------------------------------CCCCCCCceEEE
Confidence 0 0 000122456778
Q ss_pred CCCCcEEEEeC-CCeEEEEcCCCCeeee-eecCCccEEEEEec--CCEEEEEe-cCcEEEEEeCCCcccc-cccccccCE
Q 003171 428 SIDGMIWTGGA-NGLLLQWDPNGNRLQD-FQYLPFAVQCLCTF--GSQIWVGY-MNGIVQVLDLEGNLLG-GWVAHSSPV 501 (842)
Q Consensus 428 s~dg~l~Sgs~-DgtIrlWD~~g~~l~~-l~~H~~~V~sls~d--G~~LasGs-~DgtIrlWD~~g~~i~-~l~gH~~~V 501 (842)
+++|.+|.+.. ++.|.+||.+|+.... +..+...+.+++.+ |. ||.+. .++.|.+||.+++... ....+...+
T Consensus 149 ~~~g~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~i~~~~~g~-l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~ 227 (299)
T 2z2n_A 149 GSDNALWFTENQNNAIGRITESGDITEFKIPTPASGPVGITKGNDDA-LWFVEIIGNKIGRITTSGEITEFKIPTPNARP 227 (299)
T ss_dssp CTTSCEEEEETTTTEEEEECTTCCEEEEECSSTTCCEEEEEECTTSS-EEEEETTTTEEEEECTTCCEEEEECSSTTCCE
T ss_pred cCCCCEEEEeCCCCEEEEEcCCCcEEEeeCCCCCCcceeEEECCCCC-EEEEccCCceEEEECCCCcEEEEECCCCCCCc
Confidence 88999887664 5789999997665432 23344567788764 55 55554 5789999999665422 233455678
Q ss_pred EEEEe--CCCEEEEEcCCCCeeeccc
Q 003171 502 IKMAV--GAGYIFTLANHGGIRGWNV 525 (842)
Q Consensus 502 ~sla~--dg~~l~S~S~DgtIrvWd~ 525 (842)
.+|+. +|...++...++.|.+|+.
T Consensus 228 ~~i~~~~~g~l~v~~~~~~~i~~~d~ 253 (299)
T 2z2n_A 228 HAITAGAGIDLWFTEWGANKIGRLTS 253 (299)
T ss_dssp EEEEECSTTCEEEEETTTTEEEEEET
T ss_pred eeEEECCCCCEEEeccCCceEEEECC
Confidence 88886 4554455557788999885
|
| >2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=99.05 E-value=5.9e-09 Score=125.38 Aligned_cols=230 Identities=5% Similarity=-0.075 Sum_probs=136.9
Q ss_pred CeEEEEEcCCCCEEE-----EEeCCCcEEEEECCCCccCCCCCcceeEEecccCCcE--EEEEEecCCC-EEEeeCCCc-
Q 003171 193 SVMCMVGDEASGVVW-----SGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPV--LSLCISSYGD-LWSGSEGGG- 263 (842)
Q Consensus 193 ~V~~la~dpdg~~La-----SGs~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V--~slafs~dG~-L~SgS~Dgt- 263 (842)
.+.++++||||++|| +|+.+.+|++||+.++. ... ..|-..+ .+++|+|||+ |+.++.|.+
T Consensus 122 ~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~--------~~~--~~~~~~~~~~~~~wspDg~~l~~~~~d~~~ 191 (695)
T 2bkl_A 122 SLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGE--------WSK--VDVIEGGKYATPKWTPDSKGFYYEWLPTDP 191 (695)
T ss_dssp EEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCC--------BCS--SCCBSCCTTCCCEECTTSSEEEEEECCCCT
T ss_pred EEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCC--------CcC--CcccCcccccceEEecCCCEEEEEEecCCC
Confidence 688899999999999 66667799999999972 210 1122222 6789999998 788888877
Q ss_pred ------------EEEEeCCCccc--eeecCCCceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcCCCCEEEEe
Q 003171 264 ------------IKIWPWEAIEK--ALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSA 329 (842)
Q Consensus 264 ------------IrvWd~~t~~~--~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~ 329 (842)
|++|++.+... .+.+.... + ...+..+..++++..|+.+
T Consensus 192 ~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~-----------------~----------~~~~~~~~~SpDG~~l~~~ 244 (695)
T 2bkl_A 192 SIKVDERPGYTTIRYHTLGTEPSKDTVVHERTG-----------------D----------PTTFLQSDLSRDGKYLFVY 244 (695)
T ss_dssp TSCGGGGGGGCEEEEEETTSCGGGCEEEECCCC-----------------C----------TTCEEEEEECTTSCCEEEE
T ss_pred CCccccCCCCCEEEEEECCCCchhceEEEecCC-----------------C----------CEEEEEEEECCCCCEEEEE
Confidence 99999977432 11111000 0 1123345556666554433
Q ss_pred C-CC----cEEEEEccCCcEEEEeecCCceEeeeecccCCCcccccceEEEEEecCCCCccceeeeEeecCcceEEecCC
Q 003171 330 G-FL----SFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAAD 404 (842)
Q Consensus 330 s-~~----tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~ 404 (842)
+ +. .|.+||..+++... +..+.
T Consensus 245 ~~~~~~~~~l~~~~~~~~~~~~-l~~~~---------------------------------------------------- 271 (695)
T 2bkl_A 245 ILRGWSENDVYWKRPGEKDFRL-LVKGV---------------------------------------------------- 271 (695)
T ss_dssp EEETTTEEEEEEECTTCSSCEE-EEECS----------------------------------------------------
T ss_pred EeCCCCceEEEEEcCCCCceEE-eecCC----------------------------------------------------
Confidence 3 22 34455444433211 11000
Q ss_pred cEEEEeecCccccCCCceEEEEECCCCcEEEEe----CCCeEEEEcC-CCCe--eeeeecC--CccEEEEEec-CCEEEE
Q 003171 405 AVRRVAAKGGFGDDNRRTEALTTSIDGMIWTGG----ANGLLLQWDP-NGNR--LQDFQYL--PFAVQCLCTF-GSQIWV 474 (842)
Q Consensus 405 ~v~~v~~~g~~~~~~~~v~al~~s~dg~l~Sgs----~DgtIrlWD~-~g~~--l~~l~~H--~~~V~sls~d-G~~Las 474 (842)
..+....+ ++|.++..+ .++.|.+||+ +++. .+.+..| ...|.++++. +..+++
T Consensus 272 ---------------~~~~~~~~-~~g~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~lv~~ 335 (695)
T 2bkl_A 272 ---------------GAKYEVHA-WKDRFYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIVGGHLSLE 335 (695)
T ss_dssp ---------------SCCEEEEE-ETTEEEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEETTEEEEE
T ss_pred ---------------CceEEEEe-cCCcEEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEECCEEEEE
Confidence 00111122 233343333 2578999999 4543 3455544 3457777664 457777
Q ss_pred EecCcEEEEEe--CCCccccccccc-ccCEEEEE--eCCCEEE----EEcCCCCeeeccccCC
Q 003171 475 GYMNGIVQVLD--LEGNLLGGWVAH-SSPVIKMA--VGAGYIF----TLANHGGIRGWNVTSP 528 (842)
Q Consensus 475 Gs~DgtIrlWD--~~g~~i~~l~gH-~~~V~sla--~dg~~l~----S~S~DgtIrvWd~~~~ 528 (842)
...|+..+||. ++|+.++.+..| .+.|.+++ ++++.++ |..+.++|.+||+.+.
T Consensus 336 ~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~g 398 (695)
T 2bkl_A 336 YLKDATSEVRVATLKGKPVRTVQLPGVGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSVSTG 398 (695)
T ss_dssp EEETTEEEEEEEETTCCEEEECCCSSSSEECCCBSCTTCSEEEEEEEETTEEEEEEEEETTTC
T ss_pred EEECCEEEEEEEeCCCCeeEEecCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCC
Confidence 78899888885 457766666666 56676665 4677666 5556788999998654
|
| >3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A | Back alignment and structure |
|---|
Probab=99.05 E-value=5.2e-09 Score=124.40 Aligned_cols=236 Identities=13% Similarity=-0.048 Sum_probs=140.1
Q ss_pred CCCeEEEEEcCCCCEEEEE--eCCCcEEEEECCCCccCCCCCcceeEEecccCCcEE---------EEEEe--cCCC--E
Q 003171 191 VSSVMCMVGDEASGVVWSG--HRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVL---------SLCIS--SYGD--L 255 (842)
Q Consensus 191 ~~~V~~la~dpdg~~LaSG--s~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~---------slafs--~dG~--L 255 (842)
...|..+++++++-.++++ +.|+..+||....+ .....+.+|...|. +.+++ |||+ |
T Consensus 23 ~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~~--------~~~~~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~l 94 (662)
T 3azo_A 23 SGRPACVGAVGDEVWWVAPRPAEAGRATLVRRRAD--------GAEESALPAPWNVRNRVFEYSGFPWAGVPRPAGGPLL 94 (662)
T ss_dssp CSCCEEEEEETTEEEEEEEETTTTTEEEEEEECTT--------SCEEESSCTTCCBCCCGGGTCCCCEEEECCSSSSCEE
T ss_pred CCccceeEEcCCeEEEEecCcccCCcEEEEEECCC--------CCcceeCCCCccccccccccCCccceeeeecCCCeEE
Confidence 5678999999876555666 56889999996443 34566777776666 66666 9986 3
Q ss_pred EEee-CCCcEEEEeCC--CccceeecCCCceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcCCCCEEEEeCC-
Q 003171 256 WSGS-EGGGIKIWPWE--AIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGF- 331 (842)
Q Consensus 256 ~SgS-~DgtIrvWd~~--t~~~~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s~- 331 (842)
+.++ .+..|.+|++. +......+...... .+ ...+..++.++++..|+.++.
T Consensus 95 a~~~~~~~~l~~~~~~~~g~~~~~~l~~~~~~--------------~~----------~~~~~~~~~spDg~~l~~~~~~ 150 (662)
T 3azo_A 95 VFTHFGDQRLYAFEPDAPGGAVPRPLTPVSAV--------------GG----------GLRWADPVLLPERGEVWCMAEE 150 (662)
T ss_dssp EEEBTTTCCEEEECTTSTTCCCCEECSCCCCS--------------TT----------CEEEEEEEEETTTTEEEEEEEE
T ss_pred EEEECCCCeEEEEcCCCCCCCCCEeccCCccC--------------CC----------CccccCcEECCCCCEEEEEEec
Confidence 4333 24555555554 10111112110000 00 112345667777777766542
Q ss_pred ----------CcEEEEEccC------CcEEEEeecCCceEeeeecccCCCcccccceEEEEEecCCCCccceeeeEeecC
Q 003171 332 ----------LSFALWDART------RELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRS 395 (842)
Q Consensus 332 ----------~tI~lWD~~t------g~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~ 395 (842)
.+|.+||+.+ ++.. .+.
T Consensus 151 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-~l~---------------------------------------------- 183 (662)
T 3azo_A 151 FTGEGPSDVRRFLAAVPLDGSAAADRSAVR-ELS---------------------------------------------- 183 (662)
T ss_dssp ECSSSTTCEEEEEEEEETTSTTTTCGGGSE-ESS----------------------------------------------
T ss_pred ccCCCCCCceeEEEEEECCCCccccCCcee-EEE----------------------------------------------
Confidence 2577777765 3321 110
Q ss_pred cceEEecCCcEEEEeecCccccCCCceEEEEECCCCc-EEEEeCC--------CeEEEEcCC--C---CeeeeeecCCcc
Q 003171 396 RNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGM-IWTGGAN--------GLLLQWDPN--G---NRLQDFQYLPFA 461 (842)
Q Consensus 396 ~~~~~g~~~~v~~v~~~g~~~~~~~~v~al~~s~dg~-l~Sgs~D--------gtIrlWD~~--g---~~l~~l~~H~~~ 461 (842)
..+...+..+++||||+ |+.++.+ ..|++||++ | +..+...+|...
T Consensus 184 --------------------~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~ 243 (662)
T 3azo_A 184 --------------------DDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEEA 243 (662)
T ss_dssp --------------------CSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTBC
T ss_pred --------------------ecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCce
Confidence 01111233467899997 6666644 379999995 4 333444456778
Q ss_pred EEEEE--ecCCEEEEEecCc--EEEEEeCC-CcccccccccccC--------EEEEE--eCCCEEEEEcCCCCeeecccc
Q 003171 462 VQCLC--TFGSQIWVGYMNG--IVQVLDLE-GNLLGGWVAHSSP--------VIKMA--VGAGYIFTLANHGGIRGWNVT 526 (842)
Q Consensus 462 V~sls--~dG~~LasGs~Dg--tIrlWD~~-g~~i~~l~gH~~~--------V~sla--~dg~~l~S~S~DgtIrvWd~~ 526 (842)
+.++. +||+.+++++.++ .|.+||++ +++.....+|... +.+++ ++++.+++++. +++++|.+.
T Consensus 244 ~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~d 322 (662)
T 3azo_A 244 IAQAEWAPDGSLIVATDRTGWWNLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGK-GAAVLGILD 322 (662)
T ss_dssp EEEEEECTTSCEEEEECTTSSCEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBS-SSCEEEEEE
T ss_pred EcceEECCCCeEEEEECCCCCeEEEEEECCCCceeecccccccccCccccccCceEeEeCCCEEEEEEEc-CccEEEEEE
Confidence 88765 5899778877788 67777875 5544333333332 34455 47888889998 999999543
|
| >3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae} | Back alignment and structure |
|---|
Probab=99.03 E-value=4.4e-08 Score=104.23 Aligned_cols=212 Identities=11% Similarity=0.048 Sum_probs=135.0
Q ss_pred CCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEecccC-CcEEEEEEecCCCEEEeeCCCcEEEEeCCCccceeecCC
Q 003171 202 ASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHR-GPVLSLCISSYGDLWSGSEGGGIKIWPWEAIEKALSLKP 280 (842)
Q Consensus 202 dg~~LaSGs~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~-~~V~slafs~dG~L~SgS~DgtIrvWd~~t~~~~l~~~~ 280 (842)
.+++|++++.|+.|.+||.++| +.+.++..|. ..+.+++++|+|+++. +.++.|..||. +++...++..
T Consensus 4 ~~~~lv~~~~~~~v~~~d~~tG--------~~~w~~~~~~~~~~~~~~~~pdG~ilv-s~~~~V~~~d~-~G~~~W~~~~ 73 (276)
T 3no2_A 4 PQHLLVGGSGWNKIAIINKDTK--------EIVWEYPLEKGWECNSVAATKAGEILF-SYSKGAKMITR-DGRELWNIAA 73 (276)
T ss_dssp CCEEEEECTTCSEEEEEETTTT--------EEEEEEECCTTCCCCEEEECTTSCEEE-ECBSEEEEECT-TSCEEEEEEC
T ss_pred CCcEEEeeCCCCEEEEEECCCC--------eEEEEeCCCccCCCcCeEECCCCCEEE-eCCCCEEEECC-CCCEEEEEcC
Confidence 3689999999999999999887 6677777665 4789999999999655 56788999998 5543333321
Q ss_pred CceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcCCCCEEEEeCC--CcEEEEEccCCcEEEEeecCCceEeee
Q 003171 281 EERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGF--LSFALWDARTRELLKVFNIDGQIENRV 358 (842)
Q Consensus 281 ~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s~--~tI~lWD~~tg~~l~~l~~~~~~~~~~ 358 (842)
... ..+..+...+++..+++... ..+..+|. +|+.+..+......
T Consensus 74 ~~~----------------------------~~~~~~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~---- 120 (276)
T 3no2_A 74 PAG----------------------------CEMQTARILPDGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGI---- 120 (276)
T ss_dssp CTT----------------------------CEEEEEEECTTSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSC----
T ss_pred CCC----------------------------ccccccEECCCCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCC----
Confidence 100 01222334455555554332 34555564 56655544321100
Q ss_pred ecccCCCcccccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEeecCccccCCCceEEEEECCCCc-EEEEe
Q 003171 359 DMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGM-IWTGG 437 (842)
Q Consensus 359 ~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~al~~s~dg~-l~Sgs 437 (842)
..+......+.+.++|. +++.+
T Consensus 121 ---------------------------------------------------------~~~~~~~~~v~~~~~G~~lv~~~ 143 (276)
T 3no2_A 121 ---------------------------------------------------------ERPHAQFRQINKNKKGNYLVPLF 143 (276)
T ss_dssp ---------------------------------------------------------SSGGGSCSCCEECTTSCEEEEET
T ss_pred ---------------------------------------------------------CcccccccCceECCCCCEEEEec
Confidence 00000011234556776 56777
Q ss_pred CCCeEEEEcCCCCeeeeeecCCccEEEEE--ecCCEEEEEecCcEEEEEeCC-Ccccccccccc------cCEEEEE--e
Q 003171 438 ANGLLLQWDPNGNRLQDFQYLPFAVQCLC--TFGSQIWVGYMNGIVQVLDLE-GNLLGGWVAHS------SPVIKMA--V 506 (842)
Q Consensus 438 ~DgtIrlWD~~g~~l~~l~~H~~~V~sls--~dG~~LasGs~DgtIrlWD~~-g~~i~~l~gH~------~~V~sla--~ 506 (842)
.++.|..||.+|+.+-++..+. .+.++. ++|..+++++.++.|..+|.+ |+.+-.+..+. ..+.+++ .
T Consensus 144 ~~~~v~~~d~~G~~~w~~~~~~-~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~l~~~~~~~~~~ 222 (276)
T 3no2_A 144 ATSEVREIAPNGQLLNSVKLSG-TPFSSAFLDNGDCLVACGDAHCFVQLNLESNRIVRRVNANDIEGVQLFFVAQLFPLQ 222 (276)
T ss_dssp TTTEEEEECTTSCEEEEEECSS-CCCEEEECTTSCEEEECBTTSEEEEECTTTCCEEEEEEGGGSBSCCCSEEEEEEECT
T ss_pred CCCEEEEECCCCCEEEEEECCC-CccceeEcCCCCEEEEeCCCCeEEEEeCcCCcEEEEecCCCCCCccccccccceEcC
Confidence 8999999999999988887643 334443 468888888888899999998 88766654332 2256655 4
Q ss_pred CCCEEEEE
Q 003171 507 GAGYIFTL 514 (842)
Q Consensus 507 dg~~l~S~ 514 (842)
+|..+++.
T Consensus 223 ~G~i~v~~ 230 (276)
T 3no2_A 223 NGGLYICN 230 (276)
T ss_dssp TSCEEEEE
T ss_pred CCCEEEEe
Confidence 66666655
|
| >1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ... | Back alignment and structure |
|---|
Probab=99.02 E-value=7.9e-08 Score=102.31 Aligned_cols=231 Identities=9% Similarity=0.026 Sum_probs=141.0
Q ss_pred CCeEEEEEcCCCCEEEE-------EeCCCcEEEEECCCCccCCCCCcceeEEec-----ccCCcEEEEEEecC-CCEEEe
Q 003171 192 SSVMCMVGDEASGVVWS-------GHRDGRIMCWKMNARLLDSDDGFGEVLSWQ-----AHRGPVLSLCISSY-GDLWSG 258 (842)
Q Consensus 192 ~~V~~la~dpdg~~LaS-------Gs~DGtIrlWdl~~g~~~~~~~~~~~~~l~-----gH~~~V~slafs~d-G~L~Sg 258 (842)
....+++++++|+++++ +..++.|.+|+..++ + ...+. +|...+.+++++++ |+||.+
T Consensus 18 ~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g--------~-~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v~ 88 (314)
T 1pjx_A 18 PGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTG--------K-KTVICKPEVNGYGGIPAGCQCDRDANQLFVA 88 (314)
T ss_dssp TTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTC--------C-EEEEECCEETTEECCEEEEEECSSSSEEEEE
T ss_pred CCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCC--------c-EEEEEecccCCCCCCCceEEEecCCCcEEEE
Confidence 35678999999988877 688899999998775 2 22222 36678999999999 888877
Q ss_pred eCCCcEEEEeCCCccceeec-CCCceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcCCCCEEEEeCC-C----
Q 003171 259 SEGGGIKIWPWEAIEKALSL-KPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGF-L---- 332 (842)
Q Consensus 259 S~DgtIrvWd~~t~~~~l~~-~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s~-~---- 332 (842)
+.++.|.+||.+ ++.. .+ .... .+ .+...+..++.++++. +|.+.. .
T Consensus 89 ~~~~~l~~~d~~-g~~~-~~~~~~~---------------------~~---~~~~~~~~i~~d~~g~-l~v~~~~~~~~~ 141 (314)
T 1pjx_A 89 DMRLGLLVVQTD-GTFE-EIAKKDS---------------------EG---RRMQGCNDCAFDYEGN-LWITAPAGEVAP 141 (314)
T ss_dssp ETTTEEEEEETT-SCEE-ECCSBCT---------------------TS---CBCBCCCEEEECTTSC-EEEEECBCBCTT
T ss_pred ECCCCEEEEeCC-CCEE-EEEeccC---------------------CC---ccccCCcCEEECCCCC-EEEEecCccccc
Confidence 766689999986 3321 11 1000 00 0012344566666553 444331 1
Q ss_pred ------------cEEEEEccCCcEEEEeecCCceEeeeecccCCCcccccceEEEEEecCCCCccceeeeEeecCcceEE
Q 003171 333 ------------SFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIM 400 (842)
Q Consensus 333 ------------tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~ 400 (842)
.|..||.. +++....
T Consensus 142 ~~~~~~~~~~~~~l~~~~~~-g~~~~~~---------------------------------------------------- 168 (314)
T 1pjx_A 142 ADYTRSMQEKFGSIYCFTTD-GQMIQVD---------------------------------------------------- 168 (314)
T ss_dssp SCCCBTTSSSCEEEEEECTT-SCEEEEE----------------------------------------------------
T ss_pred ccccccccCCCCeEEEECCC-CCEEEec----------------------------------------------------
Confidence 12222221 1110000
Q ss_pred ecCCcEEEEeecCccccCCCceEEEEEC----CCCc-EEEE-eCCCeEEEEcCC--CC-----eeeeeecCC-ccEEEEE
Q 003171 401 GAADAVRRVAAKGGFGDDNRRTEALTTS----IDGM-IWTG-GANGLLLQWDPN--GN-----RLQDFQYLP-FAVQCLC 466 (842)
Q Consensus 401 g~~~~v~~v~~~g~~~~~~~~v~al~~s----~dg~-l~Sg-s~DgtIrlWD~~--g~-----~l~~l~~H~-~~V~sls 466 (842)
........++++ ++|. ++.+ +.++.|.+||.+ |+ ....+.++. ..+..++
T Consensus 169 ----------------~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~ 232 (314)
T 1pjx_A 169 ----------------TAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMD 232 (314)
T ss_dssp ----------------EEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEE
T ss_pred ----------------cCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceE
Confidence 000123456677 8884 6655 457889999973 43 223344443 5567776
Q ss_pred ec--CCEEEEEecCcEEEEEeCC-CcccccccccccCEEEEEe--CCCEEE-EEcCCCCeeeccccC
Q 003171 467 TF--GSQIWVGYMNGIVQVLDLE-GNLLGGWVAHSSPVIKMAV--GAGYIF-TLANHGGIRGWNVTS 527 (842)
Q Consensus 467 ~d--G~~LasGs~DgtIrlWD~~-g~~i~~l~gH~~~V~sla~--dg~~l~-S~S~DgtIrvWd~~~ 527 (842)
.+ |...++...++.|.+||.+ ++.+..+..+...+.++++ +++.|+ +...++.|..|++..
T Consensus 233 ~d~~G~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~ 299 (314)
T 1pjx_A 233 FDEDNNLLVANWGSSHIEVFGPDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQR 299 (314)
T ss_dssp EBTTCCEEEEEETTTEEEEECTTCBSCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECSS
T ss_pred ECCCCCEEEEEcCCCEEEEEcCCCCcEeEEEeCCCCCceeEEECCCCCEEEEEeCCCCeEEEEeCCC
Confidence 64 6554454568899999998 7777777777788999885 677454 555678899888754
|
| >3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis} | Back alignment and structure |
|---|
Probab=99.01 E-value=6.2e-08 Score=105.40 Aligned_cols=235 Identities=12% Similarity=0.044 Sum_probs=142.8
Q ss_pred CceeEEEEecCCEEEEec--CCCEEEEeCCCCccccccccccccCCCCCCCCCCeeeeeecCCCeEEEEEcCCCCEEEEE
Q 003171 132 GCFLRTIVCTEEQLWAGG--ENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSG 209 (842)
Q Consensus 132 ~~~~~~l~~~~~~l~~~~--D~~vrvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~V~~la~dpdg~~LaSG 209 (842)
|...+.++.+++.+|++. ++.|.+||.++...... + .+......+++++++++.++.
T Consensus 43 g~~~~~i~~~~~~lyv~~~~~~~v~viD~~t~~~~~~-----------------i----~~~~~p~~i~~~~~g~lyv~~ 101 (328)
T 3dsm_A 43 GDVAQSMVIRDGIGWIVVNNSHVIFAIDINTFKEVGR-----------------I----TGFTSPRYIHFLSDEKAYVTQ 101 (328)
T ss_dssp BSCEEEEEEETTEEEEEEGGGTEEEEEETTTCCEEEE-----------------E----ECCSSEEEEEEEETTEEEEEE
T ss_pred CccceEEEEECCEEEEEEcCCCEEEEEECcccEEEEE-----------------c----CCCCCCcEEEEeCCCeEEEEE
Confidence 345567777888999853 57999999987543221 1 113457788998888544444
Q ss_pred eCCCcEEEEECCCCccCCCCCcceeEEecccC-----CcEEEEEEecCCCEEEee--CCCcEEEEeCCCccceeecCCCc
Q 003171 210 HRDGRIMCWKMNARLLDSDDGFGEVLSWQAHR-----GPVLSLCISSYGDLWSGS--EGGGIKIWPWEAIEKALSLKPEE 282 (842)
Q Consensus 210 s~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~-----~~V~slafs~dG~L~SgS--~DgtIrvWd~~t~~~~l~~~~~~ 282 (842)
..++.|.+||..++ +....+.... .....|++ .+++|+.+. .+++|.+||+.+++....+...
T Consensus 102 ~~~~~v~~iD~~t~--------~~~~~i~~g~~~~~~~~p~~i~~-~~~~lyv~~~~~~~~v~viD~~t~~~~~~i~~g- 171 (328)
T 3dsm_A 102 IWDYRIFIINPKTY--------EITGYIECPDMDMESGSTEQMVQ-YGKYVYVNCWSYQNRILKIDTETDKVVDELTIG- 171 (328)
T ss_dssp BSCSEEEEEETTTT--------EEEEEEECTTCCTTTCBCCCEEE-ETTEEEEEECTTCCEEEEEETTTTEEEEEEECS-
T ss_pred CCCCeEEEEECCCC--------eEEEEEEcCCccccCCCcceEEE-ECCEEEEEcCCCCCEEEEEECCCCeEEEEEEcC-
Confidence 48999999999886 3443443222 14456777 556776555 4899999999775322111000
Q ss_pred eeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcCCCCEEEEeCC------------CcEEEEEccCCcEEEEeec
Q 003171 283 RHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGF------------LSFALWDARTRELLKVFNI 350 (842)
Q Consensus 283 ~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s~------------~tI~lWD~~tg~~l~~l~~ 350 (842)
.....++.++++. +|.+.. .+|.++|..++++++.+..
T Consensus 172 -----------------------------~~p~~i~~~~dG~-l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~ 221 (328)
T 3dsm_A 172 -----------------------------IQPTSLVMDKYNK-MWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKF 221 (328)
T ss_dssp -----------------------------SCBCCCEECTTSE-EEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEEC
T ss_pred -----------------------------CCccceEEcCCCC-EEEEECCCccCCccccCCceEEEEECCCCeEEEEEec
Confidence 0111234444443 443332 4688888888776543321
Q ss_pred CCceEeeeecccCCCcccccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEeecCccccCCCceEEEEECCC
Q 003171 351 DGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSID 430 (842)
Q Consensus 351 ~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~al~~s~d 430 (842)
.. ......++++||
T Consensus 222 ~~------------------------------------------------------------------g~~p~~la~~~d 235 (328)
T 3dsm_A 222 KL------------------------------------------------------------------GDWPSEVQLNGT 235 (328)
T ss_dssp CT------------------------------------------------------------------TCCCEEEEECTT
T ss_pred CC------------------------------------------------------------------CCCceeEEEecC
Confidence 00 012345788887
Q ss_pred Cc-EEEEeCCCeEEEEcC-CCCeee-e-eecCCccEEEEEe--cCCEEEEEe-----cCcEEEEEeCCCccccccc
Q 003171 431 GM-IWTGGANGLLLQWDP-NGNRLQ-D-FQYLPFAVQCLCT--FGSQIWVGY-----MNGIVQVLDLEGNLLGGWV 495 (842)
Q Consensus 431 g~-l~Sgs~DgtIrlWD~-~g~~l~-~-l~~H~~~V~sls~--dG~~LasGs-----~DgtIrlWD~~g~~i~~l~ 495 (842)
+. |+.+.. +|.+||. +++... . +..+......++. ++.+|+++. .+++|.+||.+|+++.++.
T Consensus 236 ~~~lyv~~~--~v~~~d~~t~~~~~~~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~g~~~~~i~ 309 (328)
T 3dsm_A 236 RDTLYWINN--DIWRMPVEADRVPVRPFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQGKLIDEFY 309 (328)
T ss_dssp SCEEEEESS--SEEEEETTCSSCCSSCSBCCCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTTCCEEEEEE
T ss_pred CCEEEEEcc--EEEEEECCCCceeeeeeecCCCCceEEEEEcCCCCeEEEEcccccccCCEEEEECCCCCEEEEEE
Confidence 66 666543 7999999 565432 1 2222355667766 455666654 5899999999988877664
|
| >3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp} | Back alignment and structure |
|---|
Probab=98.99 E-value=2.3e-08 Score=109.95 Aligned_cols=257 Identities=11% Similarity=-0.002 Sum_probs=133.4
Q ss_pred ceeEEecccCCcEEE-----EEEecCCC-EEEeeC-CCc--EEEEeCCCccceeecCCCceeeeEEEEeeceeeccccee
Q 003171 232 GEVLSWQAHRGPVLS-----LCISSYGD-LWSGSE-GGG--IKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLS 302 (842)
Q Consensus 232 ~~~~~l~gH~~~V~s-----lafs~dG~-L~SgS~-Dgt--IrvWd~~t~~~~l~~~~~~~~~~~l~~~~s~~~l~~~~~ 302 (842)
.+...+..|...+.. .+|||||+ |+.++. |+. |.+||+.+++.. .+... +
T Consensus 21 ~~~~~lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~-~lt~~------------------~-- 79 (388)
T 3pe7_A 21 AQVTRLTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVAT-QLTEG------------------R-- 79 (388)
T ss_dssp CEEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEE-ECCCS------------------S--
T ss_pred cceEEecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceE-EeeeC------------------C--
Confidence 566777788777776 88999998 776666 674 777788664321 11110 0
Q ss_pred ccceeeeecCCEEEEEEcCCCCEEEEeC-CCcEEEEEccCCcEEEEeecCCceEeeeec--ccCCCcccccceEEEEEec
Q 003171 303 VNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVFNIDGQIENRVDM--SLLPDFAMEDEFKTKIVTS 379 (842)
Q Consensus 303 ~~~~~~~~s~~v~~las~~~~~~v~s~s-~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~--s~~~~~~~~~~~~~~~~s~ 379 (842)
...+...+.++++..|+.++ +..|.+||+.+++....+..+........+ ++.....+ .+...
T Consensus 80 --------~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~------~~~~~ 145 (388)
T 3pe7_A 80 --------GDNTFGGFLSPDDDALFYVKDGRNLMRVDLATLEENVVYQVPAEWVGYGTWVANSDCTKLV------GIEIR 145 (388)
T ss_dssp --------CBCSSSCEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEE------EEEEE
T ss_pred --------CCCccceEEcCCCCEEEEEeCCCeEEEEECCCCcceeeeechhhcccccceeECCCCCeec------ccccc
Confidence 00111134566777666555 468999999999987666554432211111 11111100 00000
Q ss_pred CCCCcccee-eeEeecCcceEEecC-CcEEEEee-cC---ccccCCCceEEEEECC-CCc-EEEEeCC------CeEEEE
Q 003171 380 SKKDKAQSS-FGFFQRSRNAIMGAA-DAVRRVAA-KG---GFGDDNRRTEALTTSI-DGM-IWTGGAN------GLLLQW 445 (842)
Q Consensus 380 ~~~~~~~~s-~~~~~~~~~~~~g~~-~~v~~v~~-~g---~~~~~~~~v~al~~s~-dg~-l~Sgs~D------gtIrlW 445 (842)
......... ..|. ..+.... ..++.+.. .| .+..+...+..+.++| ||+ |+.++.+ ..|.+|
T Consensus 146 ~~~~~~~~~~~~~~----~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~ 221 (388)
T 3pe7_A 146 REDWVPLTDWKKFH----EFYFTKPCCRLMRVDLKTGESTVILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLI 221 (388)
T ss_dssp GGGCCCCCSHHHHH----HHGGGCCCEEEEEEETTTCCEEEEEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEE
T ss_pred Ccccccccccchhh----hhhccCCcceEEEEECCCCceEEeecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEE
Confidence 000000000 0000 0000000 11222221 11 1223345577899999 987 6655543 368888
Q ss_pred cCCCCeeeeeecCCc--cEEE--EEecCCEEEEEec-C----cEEEEEeCC-Cc--ccccccccccCEE-----EEEeCC
Q 003171 446 DPNGNRLQDFQYLPF--AVQC--LCTFGSQIWVGYM-N----GIVQVLDLE-GN--LLGGWVAHSSPVI-----KMAVGA 508 (842)
Q Consensus 446 D~~g~~l~~l~~H~~--~V~s--ls~dG~~LasGs~-D----gtIrlWD~~-g~--~i~~l~gH~~~V~-----sla~dg 508 (842)
|.++..++.+..+.. .+.. +++||++|+..+. + ..|.+||++ |+ .+..+.++..... .+++||
T Consensus 222 d~~~~~~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg 301 (388)
T 3pe7_A 222 NEDGTNMRKVKTHAEGESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDG 301 (388)
T ss_dssp ETTSCCCEESCCCCTTEEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEE
T ss_pred eCCCCceEEeeeCCCCcccccceECCCCCEEEEEecCCCCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccCC
Confidence 887766666665552 4554 4568997765443 2 249999997 44 3444444221111 356788
Q ss_pred CEEEEE---------cCCCCeeeccccC
Q 003171 509 GYIFTL---------ANHGGIRGWNVTS 527 (842)
Q Consensus 509 ~~l~S~---------S~DgtIrvWd~~~ 527 (842)
+.|+.. +.+..|.+||+.+
T Consensus 302 ~~l~~~~~~~~~~~~~~~~~i~~~d~~~ 329 (388)
T 3pe7_A 302 SDAPVDVQDDSGYKIENDPFLYVFNMKN 329 (388)
T ss_dssp CCC------------CCCCEEEEEETTT
T ss_pred CcceeEeeeccccccCCCCEEEEEeccC
Confidence 877633 5566899999765
|
| >1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A | Back alignment and structure |
|---|
Probab=98.97 E-value=2.4e-07 Score=96.43 Aligned_cols=226 Identities=8% Similarity=0.012 Sum_probs=135.4
Q ss_pred eEEEEecCC-EEEE-e--cCCCEEEEeCCCCccccccccccccCCCCCCCCCCeeeeeecCCCeEEEEEcCCCCEEEEEe
Q 003171 135 LRTIVCTEE-QLWA-G--GENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGH 210 (842)
Q Consensus 135 ~~~l~~~~~-~l~~-~--~D~~vrvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~V~~la~dpdg~~LaSGs 210 (842)
...|+.+.+ .||+ + .++.|.+||..+..... .+ ..+...+.+++++++|+++++..
T Consensus 26 p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~----------------~~----~~~~~~p~~i~~~~~g~l~v~~~ 85 (270)
T 1rwi_B 26 PSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTV----------------LP----FNGLYQPQGLAVDGAGTVYVTDF 85 (270)
T ss_dssp EEEEEECTTCCEEEEECSSSCEEEEECC-----EE----------------CC----CCSCCSCCCEEECTTCCEEEEET
T ss_pred ccceEECCCCCEEEEccCCCCcEEEecCCCcccce----------------Ee----eCCcCCcceeEECCCCCEEEEcC
Confidence 345666533 6888 5 46799999875432110 00 00123567899999988555555
Q ss_pred CCCcEEEEECCCCccCCCCCcceeEEec-ccCCcEEEEEEecCCCEE-EeeCCCcEEEEeCCCccceeecCCCceeeeEE
Q 003171 211 RDGRIMCWKMNARLLDSDDGFGEVLSWQ-AHRGPVLSLCISSYGDLW-SGSEGGGIKIWPWEAIEKALSLKPEERHTAAL 288 (842)
Q Consensus 211 ~DGtIrlWdl~~g~~~~~~~~~~~~~l~-gH~~~V~slafs~dG~L~-SgS~DgtIrvWd~~t~~~~l~~~~~~~~~~~l 288 (842)
++.|.+|+..+. ....+. +....+.+|+++++|+|| +.+.++.|.+|+..+.........
T Consensus 86 -~~~i~~~d~~~~---------~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~-------- 147 (270)
T 1rwi_B 86 -NNRVVTLAAGSN---------NQTVLPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFT-------- 147 (270)
T ss_dssp -TTEEEEECTTCS---------CCEECCCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEECCCC--------
T ss_pred -CCEEEEEeCCCc---------eEeeeecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEeeccc--------
Confidence 889999998774 222232 233678999999999976 445678999997644221110000
Q ss_pred EEeeceeecccceeccceeeeecCCEEEEEEcCCCCEEEEeC--CCcEEEEEccCCcEEEEeecCCceEeeeecccCCCc
Q 003171 289 IVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG--FLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDF 366 (842)
Q Consensus 289 ~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s--~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~ 366 (842)
+ ......++.++++. +|.+. .+.|.+||..++......
T Consensus 148 ----------------~-----~~~p~~i~~~~~g~-l~v~~~~~~~i~~~~~~~~~~~~~~------------------ 187 (270)
T 1rwi_B 148 ----------------G-----LNDPDGVAVDNSGN-VYVTDTDNNRVVKLEAESNNQVVLP------------------ 187 (270)
T ss_dssp ----------------S-----CCSCCCEEECTTCC-EEEEEGGGTEEEEECTTTCCEEECC------------------
T ss_pred ----------------c-----CCCceeEEEeCCCC-EEEEECCCCEEEEEecCCCceEeec------------------
Confidence 0 01223456666554 55443 346888887654321100
Q ss_pred ccccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEeecCccccCCCceEEEEECCCCcEEEEe-CCCeEEEE
Q 003171 367 AMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGMIWTGG-ANGLLLQW 445 (842)
Q Consensus 367 ~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~al~~s~dg~l~Sgs-~DgtIrlW 445 (842)
......+..++++++|.+|.+. .++.|.+|
T Consensus 188 -------------------------------------------------~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~ 218 (270)
T 1rwi_B 188 -------------------------------------------------FTDITAPWGIAVDEAGTVYVTEHNTNQVVKL 218 (270)
T ss_dssp -------------------------------------------------CSSCCSEEEEEECTTCCEEEEETTTSCEEEE
T ss_pred -------------------------------------------------ccCCCCceEEEECCCCCEEEEECCCCcEEEE
Confidence 0001234567888999987766 46789999
Q ss_pred cCCCCeeeeee-cCCccEEEEEe--cCCEEEEEecCcEEEEEeCC
Q 003171 446 DPNGNRLQDFQ-YLPFAVQCLCT--FGSQIWVGYMNGIVQVLDLE 487 (842)
Q Consensus 446 D~~g~~l~~l~-~H~~~V~sls~--dG~~LasGs~DgtIrlWD~~ 487 (842)
|.++.....+. .+...+.+++. +|+.+++...+++|+++++.
T Consensus 219 ~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~v~~~~~~ 263 (270)
T 1rwi_B 219 LAGSTTSTVLPFTGLNTPLAVAVDSDRTVYVADRGNDRVVKLTSL 263 (270)
T ss_dssp CTTCSCCEECCCCSCSCEEEEEECTTCCEEEEEGGGTEEEEECCC
T ss_pred cCCCCcceeeccCCCCCceeEEECCCCCEEEEECCCCEEEEEcCC
Confidence 99765443332 33356778776 57766666679999999986
|
| >2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} | Back alignment and structure |
|---|
Probab=98.96 E-value=1.3e-06 Score=91.72 Aligned_cols=262 Identities=12% Similarity=0.118 Sum_probs=155.7
Q ss_pred eeEEEEecCC-EEEEec--CCCEEEEeCCCCccccccccccccCCCCCCCCCCeeeeeecCCCeEEEEEcCCCCEEEEEe
Q 003171 134 FLRTIVCTEE-QLWAGG--ENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGH 210 (842)
Q Consensus 134 ~~~~l~~~~~-~l~~~~--D~~vrvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~V~~la~dpdg~~LaSGs 210 (842)
..+.|+.+.+ .+|++. ++.|.+||.. ..... +.... +...+.+++++++|++.++..
T Consensus 21 ~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~~------------------~~~~~-~~~~~~~i~~~~~g~l~v~~~ 80 (300)
T 2qc5_A 21 GPYGITSSEDGKVWFTQHKANKISSLDQS-GRIKE------------------FEVPT-PDAKVMCLIVSSLGDIWFTEN 80 (300)
T ss_dssp CEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEE------------------EECSS-TTCCEEEEEECTTSCEEEEET
T ss_pred CcceeeECCCCCEEEEcCCCCeEEEECCC-CceEE------------------EECCC-CCCcceeEEECCCCCEEEEec
Confidence 4556776644 788864 5789999976 22110 00000 134688999999988777766
Q ss_pred CCCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCCCEEEee-CCCcEEEEeCCCccce-eecCCCceeeeEE
Q 003171 211 RDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGDLWSGS-EGGGIKIWPWEAIEKA-LSLKPEERHTAAL 288 (842)
Q Consensus 211 ~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~L~SgS-~DgtIrvWd~~t~~~~-l~~~~~~~~~~~l 288 (842)
.++.|..+|.. +. .....+..+...+.+|+++++|+||.+. .++.|..++.+ ++.. +....
T Consensus 81 ~~~~v~~~d~~-g~-------~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~-------- 143 (300)
T 2qc5_A 81 GANKIGKLSKK-GG-------FTEYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIYEYDLPN-------- 143 (300)
T ss_dssp TTTEEEEECTT-SC-------EEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEEEEECSS--------
T ss_pred CCCeEEEECCC-CC-------eEEecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCEEEccCCC--------
Confidence 68899999987 41 2222333344678999999999987544 47889999875 2211 10000
Q ss_pred EEeeceeecccceeccceeeeecCCEEEEEEcCCCCEEEEeC--CCcEEEEEccCCcEEEEeecCCceEeeeecccCCCc
Q 003171 289 IVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG--FLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDF 366 (842)
Q Consensus 289 ~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s--~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~ 366 (842)
.......++.++++. +|.+. ...|..+|. +++... +..
T Consensus 144 ---------------------~~~~~~~i~~d~~g~-l~v~~~~~~~i~~~~~-~g~~~~-~~~---------------- 183 (300)
T 2qc5_A 144 ---------------------KGSYPAFITLGSDNA-LWFTENQNNSIGRITN-TGKLEE-YPL---------------- 183 (300)
T ss_dssp ---------------------TTCCEEEEEECTTSS-EEEEETTTTEEEEECT-TCCEEE-EEC----------------
T ss_pred ---------------------CCCCceeEEECCCCC-EEEEecCCCeEEEECC-CCcEEE-eeC----------------
Confidence 012345677766655 55544 346777776 444321 100
Q ss_pred ccccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEeecCccccCCCceEEEEECCCCcEEEEeC-CCeEEEE
Q 003171 367 AMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGMIWTGGA-NGLLLQW 445 (842)
Q Consensus 367 ~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~al~~s~dg~l~Sgs~-DgtIrlW 445 (842)
......+..++++++|.+|.+.. .+.|.+|
T Consensus 184 -------------------------------------------------~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~ 214 (300)
T 2qc5_A 184 -------------------------------------------------PTNAAAPVGITSGNDGALWFVEIMGNKIGRI 214 (300)
T ss_dssp -------------------------------------------------SSTTCCEEEEEECTTSSEEEEETTTTEEEEE
T ss_pred -------------------------------------------------CCCCCCcceEEECCCCCEEEEccCCCEEEEE
Confidence 00012244677888899887764 5679999
Q ss_pred cCCCCeeee-eecCCccEEEEEec--CCEEEEEe-cCcEEEEEeCCCcccc-cccccccCEEEEEeC--CCEEEEEcCCC
Q 003171 446 DPNGNRLQD-FQYLPFAVQCLCTF--GSQIWVGY-MNGIVQVLDLEGNLLG-GWVAHSSPVIKMAVG--AGYIFTLANHG 518 (842)
Q Consensus 446 D~~g~~l~~-l~~H~~~V~sls~d--G~~LasGs-~DgtIrlWD~~g~~i~-~l~gH~~~V~sla~d--g~~l~S~S~Dg 518 (842)
|.+|+.... +..+...+.+++.+ |+ ||.+. .++.|..||.+++... .+..+...+.+|+.+ |...+ ++..
T Consensus 215 ~~~g~~~~~~~~~~~~~~~~i~~d~~g~-l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v-~~~~- 291 (300)
T 2qc5_A 215 TTTGEISEYDIPTPNARPHAITAGKNSE-IWFTEWGANQIGRITNDNTIQEYQLQTENAEPHGITFGKDGSVWF-ALKC- 291 (300)
T ss_dssp CTTCCEEEEECSSTTCCEEEEEECSTTC-EEEEETTTTEEEEECTTSCEEEEECCSTTCCCCCEEECTTSCEEE-ECSS-
T ss_pred cCCCcEEEEECCCCCCCceEEEECCCCC-EEEeccCCCeEEEECCCCcEEEEECCccCCccceeEeCCCCCEEE-EccC-
Confidence 997765432 23345667888765 55 66665 4689999998765432 223334557777754 44333 3333
Q ss_pred Ceeecc
Q 003171 519 GIRGWN 524 (842)
Q Consensus 519 tIrvWd 524 (842)
.|..++
T Consensus 292 ~i~~~~ 297 (300)
T 2qc5_A 292 KIGKLN 297 (300)
T ss_dssp EEEEEE
T ss_pred ceEEeC
Confidence 554444
|
| >3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A | Back alignment and structure |
|---|
Probab=98.86 E-value=4.7e-07 Score=99.72 Aligned_cols=315 Identities=10% Similarity=0.079 Sum_probs=168.5
Q ss_pred EecCCEEEEec-CCCEEEEeCCCCccccccccccccCCCCCCCCCCeeeeeecCCCeE-EEEEcCCCCEEEEEeCCCcEE
Q 003171 139 VCTEEQLWAGG-ENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVM-CMVGDEASGVVWSGHRDGRIM 216 (842)
Q Consensus 139 ~~~~~~l~~~~-D~~vrvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~V~-~la~dpdg~~LaSGs~DGtIr 216 (842)
+..++.+|+++ ++.|..+|.+++...... .. +... .... .. ...+. .++. +++.|+.++.|+.+.
T Consensus 50 ~v~~~~v~~~~~~g~v~a~d~~tG~~~W~~---~~----~~~~--~~~~-~~-~~~~~~~~~~--~~~~v~v~~~~g~l~ 116 (376)
T 3q7m_A 50 ALADNVVYAADRAGLVKALNADDGKEIWSV---SL----AEKD--GWFS-KE-PALLSGGVTV--SGGHVYIGSEKAQVY 116 (376)
T ss_dssp EEETTEEEEECTTSEEEEEETTTCCEEEEE---EC----CC-----CCS-CC-CCCEEEEEEE--ETTEEEEEETTSEEE
T ss_pred EEECCEEEEEcCCCeEEEEEccCCceeeee---cC----cccc--cccc-cc-CcccccCceE--eCCEEEEEcCCCEEE
Confidence 34677888865 679999999876543210 00 0000 0000 00 11222 2333 357899999999999
Q ss_pred EEECCCCccCCCCCcceeEEecccCCcEEEEEEecCCCEEEeeCCCcEEEEeCCCccceeecCCCceeeeEEEEeeceee
Q 003171 217 CWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGDLWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYID 296 (842)
Q Consensus 217 lWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~L~SgS~DgtIrvWd~~t~~~~l~~~~~~~~~~~l~~~~s~~~ 296 (842)
.+|..+| +.+-+...+.....+.+. .++.++.++.++.|..+|..+++............ .
T Consensus 117 a~d~~tG--------~~~W~~~~~~~~~~~p~~-~~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~----------~ 177 (376)
T 3q7m_A 117 ALNTSDG--------TVAWQTKVAGEALSRPVV-SDGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSL----------S 177 (376)
T ss_dssp EEETTTC--------CEEEEEECSSCCCSCCEE-ETTEEEEECTTSEEEEEETTTCCEEEEEECCC--------------
T ss_pred EEECCCC--------CEEEEEeCCCceEcCCEE-ECCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCce----------e
Confidence 9999987 444333322211111222 35778999999999999998876544332111000 0
Q ss_pred cccceeccceeeeecCCEEEEEEcCCCCEEEEeC-CCcEEEEEccCCcEEEEeecCCceEeeeecccCCCcccccceEEE
Q 003171 297 LRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTK 375 (842)
Q Consensus 297 l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s-~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~ 375 (842)
.++. .. .+.. +..|+.+. ++.+..+|..+|+.+-.+....... ........+..
T Consensus 178 ~~~~----------~~----~~~~--~~~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~-~~~~~~~~~~~-------- 232 (376)
T 3q7m_A 178 LRGE----------SA----PTTA--FGAAVVGGDNGRVSAVLMEQGQMIWQQRISQATG-STEIDRLSDVD-------- 232 (376)
T ss_dssp -CCC----------CC----CEEE--TTEEEECCTTTEEEEEETTTCCEEEEEECCC------------CCC--------
T ss_pred ecCC----------CC----cEEE--CCEEEEEcCCCEEEEEECCCCcEEEEEecccCCC-CcccccccccC--------
Confidence 0000 00 1111 34566665 4679999999999876654321100 00000000000
Q ss_pred EEecCCCCccceeeeEeecCcceEEecC-CcEEEEee-cCccc--cCCCceEEEEECCCCcEEEEeCCCeEEEEcC-CCC
Q 003171 376 IVTSSKKDKAQSSFGFFQRSRNAIMGAA-DAVRRVAA-KGGFG--DDNRRTEALTTSIDGMIWTGGANGLLLQWDP-NGN 450 (842)
Q Consensus 376 ~~s~~~~~~~~~s~~~~~~~~~~~~g~~-~~v~~v~~-~g~~~--~~~~~v~al~~s~dg~l~Sgs~DgtIrlWD~-~g~ 450 (842)
.. ... ....++++.. ..+..+.. .|... ........++. .++.++.++.++.|..+|. +|+
T Consensus 233 ---~~--------p~~--~~~~v~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~-~~~~l~~~~~~g~l~~~d~~tG~ 298 (376)
T 3q7m_A 233 ---TT--------PVV--VNGVVFALAYNGNLTALDLRSGQIMWKRELGSVNDFIV-DGNRIYLVDQNDRVMALTIDGGV 298 (376)
T ss_dssp ---CC--------CEE--ETTEEEEECTTSCEEEEETTTCCEEEEECCCCEEEEEE-ETTEEEEEETTCCEEEEETTTCC
T ss_pred ---CC--------cEE--ECCEEEEEecCcEEEEEECCCCcEEeeccCCCCCCceE-ECCEEEEEcCCCeEEEEECCCCc
Confidence 00 000 0112233332 22333332 22111 11122333333 3678999999999999999 788
Q ss_pred eeeeeec-CCccEEEEEecCCEEEEEecCcEEEEEeCC-CcccccccccccCEEE-EEeCCCEEEEEcCCCCeeecc
Q 003171 451 RLQDFQY-LPFAVQCLCTFGSQIWVGYMNGIVQVLDLE-GNLLGGWVAHSSPVIK-MAVGAGYIFTLANHGGIRGWN 524 (842)
Q Consensus 451 ~l~~l~~-H~~~V~sls~dG~~LasGs~DgtIrlWD~~-g~~i~~l~gH~~~V~s-la~dg~~l~S~S~DgtIrvWd 524 (842)
.+-.... ....+.+....+.+|++++.+|.|.++|.+ |+.+.........+.+ ....+..|+.++.||.|..|+
T Consensus 299 ~~w~~~~~~~~~~~~~~~~~~~l~v~~~~g~l~~~d~~tG~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~G~l~~~~ 375 (376)
T 3q7m_A 299 TLWTQSDLLHRLLTSPVLYNGNLVVGDSEGYLHWINVEDGRFVAQQKVDSSGFQTEPVAADGKLLIQAKDGTVYSIT 375 (376)
T ss_dssp EEEEECTTTTSCCCCCEEETTEEEEECTTSEEEEEETTTCCEEEEEECCTTCBCSCCEEETTEEEEEBTTSCEEEEE
T ss_pred EEEeecccCCCcccCCEEECCEEEEEeCCCeEEEEECCCCcEEEEEecCCCcceeCCEEECCEEEEEeCCCEEEEEe
Confidence 7655542 222333444567899999999999999986 7776555543333332 334567888899999998876
|
| >1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A* | Back alignment and structure |
|---|
Probab=98.86 E-value=2.3e-06 Score=100.30 Aligned_cols=271 Identities=13% Similarity=0.062 Sum_probs=156.7
Q ss_pred EEEE--ecCCCEEEEeCCCCccccccccccccCCCCCCCCCCeeeeeecCCCeEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 003171 144 QLWA--GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGHRDGRIMCWKMN 221 (842)
Q Consensus 144 ~l~~--~~D~~vrvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~V~~la~dpdg~~LaSGs~DGtIrlWdl~ 221 (842)
.+++ ..++.|.|+|.++...... +.....+.+++++|||++|++++.|+.|.+||+.
T Consensus 168 ~~~V~~~~~~~V~viD~~t~~v~~~---------------------i~~g~~p~~v~~SpDGr~lyv~~~dg~V~viD~~ 226 (567)
T 1qks_A 168 LFSVTLRDAGQIALIDGSTYEIKTV---------------------LDTGYAVHISRLSASGRYLFVIGRDGKVNMIDLW 226 (567)
T ss_dssp EEEEEETTTTEEEEEETTTCCEEEE---------------------EECSSCEEEEEECTTSCEEEEEETTSEEEEEETT
T ss_pred eEEEEeCCCCeEEEEECCCCeEEEE---------------------EeCCCCccceEECCCCCEEEEEcCCCeEEEEECC
Confidence 4554 3578999999976543211 1102356689999999999999999999999995
Q ss_pred --CCccCCCCCcceeEEecccCCcEEEEEEe----cCCC-EE-EeeCCCcEEEEeCCCccceeecCCCceeeeEEEEeec
Q 003171 222 --ARLLDSDDGFGEVLSWQAHRGPVLSLCIS----SYGD-LW-SGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERS 293 (842)
Q Consensus 222 --~g~~~~~~~~~~~~~l~gH~~~V~slafs----~dG~-L~-SgS~DgtIrvWd~~t~~~~l~~~~~~~~~~~l~~~~s 293 (842)
++ +.+.++....+ -..++|| |||+ ++ +...+++|.|+|..+.+.......
T Consensus 227 ~~t~--------~~v~~i~~G~~-P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~------------- 284 (567)
T 1qks_A 227 MKEP--------TTVAEIKIGSE-ARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQST------------- 284 (567)
T ss_dssp SSSC--------CEEEEEECCSE-EEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEEC-------------
T ss_pred CCCC--------cEeEEEecCCC-CceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEec-------------
Confidence 53 44555544333 4689999 6998 55 555679999999877543211110
Q ss_pred eeecccceeccceeeeecCCEEEEEEcCCCCEEE-EeC-CCcEEEEEccCCcEEEEeecCCceEeeeecccCCCcccccc
Q 003171 294 YIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVW-SAG-FLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDE 371 (842)
Q Consensus 294 ~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~-s~s-~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~~~~~~ 371 (842)
.+. ...+....+...+..+..++.+..++ +.. .+.|.++|..+.+.+++-.
T Consensus 285 ----~~~-~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~---------------------- 337 (567)
T 1qks_A 285 ----RGM-TYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTE---------------------- 337 (567)
T ss_dssp ----CEE-CTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEE----------------------
T ss_pred ----ccc-ccccccccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCccceeee----------------------
Confidence 000 00000011122344455555443322 222 2455566654433211100
Q ss_pred eEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEeecCccccCCCceEEEEECCCCc-EEEEe-CCCeEEEEcC-C
Q 003171 372 FKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGM-IWTGG-ANGLLLQWDP-N 448 (842)
Q Consensus 372 ~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~al~~s~dg~-l~Sgs-~DgtIrlWD~-~ 448 (842)
+ ........+.++|||+ ++++. .+++|.++|+ +
T Consensus 338 ----------------------------i----------------~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t 373 (567)
T 1qks_A 338 ----------------------------I----------------SAERFLHDGGLDGSHRYFITAANARNKLVVIDTKE 373 (567)
T ss_dssp ----------------------------E----------------ECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTT
T ss_pred ----------------------------e----------------eccccccCceECCCCCEEEEEeCCCCeEEEEECCC
Confidence 0 0001123466889987 55444 5778999999 6
Q ss_pred CCeeeeeec-----CCc-cEEEEEecCCEEEEEe--cCcEEEEEeCCC--------cccccccccccC-E-EEEEeCCCE
Q 003171 449 GNRLQDFQY-----LPF-AVQCLCTFGSQIWVGY--MNGIVQVLDLEG--------NLLGGWVAHSSP-V-IKMAVGAGY 510 (842)
Q Consensus 449 g~~l~~l~~-----H~~-~V~sls~dG~~LasGs--~DgtIrlWD~~g--------~~i~~l~gH~~~-V-~sla~dg~~ 510 (842)
++.+..+.. |.. .++-+.+++..+|+.+ .+++|.|+|... +.++++.+.... + ....+++++
T Consensus 374 ~kl~~~i~vgg~~Phpg~g~~~~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~~~g~g~~~i~~~p~~~~ 453 (567)
T 1qks_A 374 GKLVAIEDTGGQTPHPGRGANFVHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGGGSLFIKTHPNSQY 453 (567)
T ss_dssp TEEEEEEECSSSSBCCTTCEEEEETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCSE
T ss_pred CcEEEEEeccCcCCCCccceeeECCCCCcEEEeCCCCCCeEEEecCCCCCCccccCEEEEEEecCCCCCEEEEeCCCCCe
Confidence 776665543 543 3333456666666544 368999999752 345555543222 1 223467887
Q ss_pred EEEEcC-------CCCeeeccccCC
Q 003171 511 IFTLAN-------HGGIRGWNVTSP 528 (842)
Q Consensus 511 l~S~S~-------DgtIrvWd~~~~ 528 (842)
++.... .++|.++|+.+.
T Consensus 454 l~v~~~~~~~~~~~~~v~v~d~~~~ 478 (567)
T 1qks_A 454 LYVDATLNPEAEISGSVAVFDIKAM 478 (567)
T ss_dssp EEEECTTCSSHHHHTCEEEEEGGGC
T ss_pred EEEecCCCCCcccCceEEEEECCcc
Confidence 775442 459999998764
|
| >2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=98.84 E-value=1.2e-07 Score=114.03 Aligned_cols=105 Identities=12% Similarity=-0.042 Sum_probs=70.3
Q ss_pred ceEEEEECCCCc-EEEEeCCC----eEEEEcCCCCeeeeeecCCccEEE-EEecCCEEEEEec----CcEEEEEeCC-Cc
Q 003171 421 RTEALTTSIDGM-IWTGGANG----LLLQWDPNGNRLQDFQYLPFAVQC-LCTFGSQIWVGYM----NGIVQVLDLE-GN 489 (842)
Q Consensus 421 ~v~al~~s~dg~-l~Sgs~Dg----tIrlWD~~g~~l~~l~~H~~~V~s-ls~dG~~LasGs~----DgtIrlWD~~-g~ 489 (842)
.+..+.+||||+ |+.++.++ .|.+||..+..++.+..+...+.. +.++|+ ++..+. ++.|.+||++ ++
T Consensus 228 ~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~g~-l~~~s~~~~~~~~l~~~d~~~~~ 306 (695)
T 2bkl_A 228 TFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKDFRLLVKGVGAKYEVHAWKDR-FYVLTDEGAPRQRVFEVDPAKPA 306 (695)
T ss_dssp CEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCSSCEEEEECSSCCEEEEEETTE-EEEEECTTCTTCEEEEEBTTBCS
T ss_pred EEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCceEEeecCCCceEEEEecCCc-EEEEECCCCCCCEEEEEeCCCCC
Confidence 345678899997 66666555 678887743345556665555444 456888 665554 5899999987 43
Q ss_pred c--ccccccc--ccCEEEEEe-CCCEEEEEcCCCCeeecccc
Q 003171 490 L--LGGWVAH--SSPVIKMAV-GAGYIFTLANHGGIRGWNVT 526 (842)
Q Consensus 490 ~--i~~l~gH--~~~V~sla~-dg~~l~S~S~DgtIrvWd~~ 526 (842)
. ...+..| ...|.++++ ++..+++...|+..++|.+.
T Consensus 307 ~~~~~~l~~~~~~~~l~~~~~~~~~lv~~~~~dg~~~l~~~~ 348 (695)
T 2bkl_A 307 RASWKEIVPEDSSASLLSVSIVGGHLSLEYLKDATSEVRVAT 348 (695)
T ss_dssp GGGCEEEECCCSSCEEEEEEEETTEEEEEEEETTEEEEEEEE
T ss_pred ccCCeEEecCCCCCeEEEEEEECCEEEEEEEECCEEEEEEEe
Confidence 2 3445444 345666765 55677899999999999765
|
| >1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ... | Back alignment and structure |
|---|
Probab=98.83 E-value=1.8e-06 Score=91.75 Aligned_cols=66 Identities=12% Similarity=0.114 Sum_probs=52.6
Q ss_pred eEEEEECCCCcEEEEe-CCCeEEEEcCC-CCeeeeeecCCccEEEEEe--cCCEEEEEec-CcEEEEEeCC
Q 003171 422 TEALTTSIDGMIWTGG-ANGLLLQWDPN-GNRLQDFQYLPFAVQCLCT--FGSQIWVGYM-NGIVQVLDLE 487 (842)
Q Consensus 422 v~al~~s~dg~l~Sgs-~DgtIrlWD~~-g~~l~~l~~H~~~V~sls~--dG~~LasGs~-DgtIrlWD~~ 487 (842)
+..++++++|.+|.+. .++.|.+||.+ |+.+..+..+...+.++++ +|++||+++. ++.|..|+++
T Consensus 228 p~~i~~d~~G~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~ 298 (314)
T 1pjx_A 228 ADGMDFDEDNNLLVANWGSSHIEVFGPDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQ 298 (314)
T ss_dssp EEEEEEBTTCCEEEEEETTTEEEEECTTCBSCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECS
T ss_pred CCceEECCCCCEEEEEcCCCEEEEEcCCCCcEeEEEeCCCCCceeEEECCCCCEEEEEeCCCCeEEEEeCC
Confidence 3457888999988765 67889999995 8888888777778888875 6887877664 6899999976
|
| >2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} | Back alignment and structure |
|---|
Probab=98.83 E-value=6.5e-06 Score=86.32 Aligned_cols=228 Identities=13% Similarity=0.137 Sum_probs=141.5
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCCCEEEee-CCCcEEEEeC
Q 003171 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGDLWSGS-EGGGIKIWPW 269 (842)
Q Consensus 191 ~~~V~~la~dpdg~~LaSGs~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~L~SgS-~DgtIrvWd~ 269 (842)
...+.+++++++|++.++...++.|.+|+.. +. .....+..+...+.+|+++++|.||.+. .++.|.++|.
T Consensus 19 ~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~-------~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~ 90 (300)
T 2qc5_A 19 DSGPYGITSSEDGKVWFTQHKANKISSLDQS-GR-------IKEFEVPTPDAKVMCLIVSSLGDIWFTENGANKIGKLSK 90 (300)
T ss_dssp TCCEEEEEECTTSCEEEEETTTTEEEEECTT-SC-------EEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT
T ss_pred CCCcceeeECCCCCEEEEcCCCCeEEEECCC-Cc-------eEEEECCCCCCcceeEEECCCCCEEEEecCCCeEEEECC
Confidence 3467899999998877766678999999987 42 1122333445679999999999987554 4788999987
Q ss_pred CCccce-eecCCCceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcCCCCEEEEeC--CCcEEEEEccCCcEEE
Q 003171 270 EAIEKA-LSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG--FLSFALWDARTRELLK 346 (842)
Q Consensus 270 ~t~~~~-l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s--~~tI~lWD~~tg~~l~ 346 (842)
. ++.. +.... . ......++.++++. +|.+. .+.|..+|.. ++...
T Consensus 91 ~-g~~~~~~~~~-------------------~----------~~~~~~i~~~~~g~-l~v~~~~~~~i~~~~~~-g~~~~ 138 (300)
T 2qc5_A 91 K-GGFTEYPLPQ-------------------P----------DSGPYGITEGLNGD-IWFTQLNGDRIGKLTAD-GTIYE 138 (300)
T ss_dssp T-SCEEEEECSS-------------------T----------TCCEEEEEECSTTC-EEEEETTTTEEEEECTT-SCEEE
T ss_pred C-CCeEEecCCC-------------------C----------CCCCccceECCCCC-EEEEccCCCeEEEECCC-CCEEE
Confidence 5 2211 10000 0 12345666765554 55443 3467777765 44321
Q ss_pred EeecCCceEeeeecccCCCcccccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEeecCccccCCCceEEEE
Q 003171 347 VFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALT 426 (842)
Q Consensus 347 ~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~al~ 426 (842)
+.. ......+..++
T Consensus 139 -~~~-----------------------------------------------------------------~~~~~~~~~i~ 152 (300)
T 2qc5_A 139 -YDL-----------------------------------------------------------------PNKGSYPAFIT 152 (300)
T ss_dssp -EEC-----------------------------------------------------------------SSTTCCEEEEE
T ss_pred -ccC-----------------------------------------------------------------CCCCCCceeEE
Confidence 100 00012244677
Q ss_pred ECCCCcEEEEeC-CCeEEEEcCCCCeeee-eecCCccEEEEEec--CCEEEEEe-cCcEEEEEeCCCcccc-cccccccC
Q 003171 427 TSIDGMIWTGGA-NGLLLQWDPNGNRLQD-FQYLPFAVQCLCTF--GSQIWVGY-MNGIVQVLDLEGNLLG-GWVAHSSP 500 (842)
Q Consensus 427 ~s~dg~l~Sgs~-DgtIrlWD~~g~~l~~-l~~H~~~V~sls~d--G~~LasGs-~DgtIrlWD~~g~~i~-~l~gH~~~ 500 (842)
++++|.+|.+.. ++.|..+|.+++.... +..+...+.+++.+ | .||.+. ..+.|.+||.+++... .+..+...
T Consensus 153 ~d~~g~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~i~~d~~g-~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~ 231 (300)
T 2qc5_A 153 LGSDNALWFTENQNNSIGRITNTGKLEEYPLPTNAAAPVGITSGNDG-ALWFVEIMGNKIGRITTTGEISEYDIPTPNAR 231 (300)
T ss_dssp ECTTSSEEEEETTTTEEEEECTTCCEEEEECSSTTCCEEEEEECTTS-SEEEEETTTTEEEEECTTCCEEEEECSSTTCC
T ss_pred ECCCCCEEEEecCCCeEEEECCCCcEEEeeCCCCCCCcceEEECCCC-CEEEEccCCCEEEEEcCCCcEEEEECCCCCCC
Confidence 888899887764 6789999997765432 12344567788765 5 455555 4678999999765433 23345567
Q ss_pred EEEEEe--CCCEEEEEcCCCCeeeccc
Q 003171 501 VIKMAV--GAGYIFTLANHGGIRGWNV 525 (842)
Q Consensus 501 V~sla~--dg~~l~S~S~DgtIrvWd~ 525 (842)
+.+|+. +|+..++...++.|.+|+.
T Consensus 232 ~~~i~~d~~g~l~v~~~~~~~i~~~~~ 258 (300)
T 2qc5_A 232 PHAITAGKNSEIWFTEWGANQIGRITN 258 (300)
T ss_dssp EEEEEECSTTCEEEEETTTTEEEEECT
T ss_pred ceEEEECCCCCEEEeccCCCeEEEECC
Confidence 888886 4554455555788888874
|
| >3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.80 E-value=1.8e-07 Score=100.21 Aligned_cols=256 Identities=11% Similarity=0.077 Sum_probs=152.5
Q ss_pred eeEEEEec-CCEEEEecCCCEEEEeCCCCccccccccccccCCCCCCCCCCeeeeeecCCCeEEEEEcCCCCEEEEEeCC
Q 003171 134 FLRTIVCT-EEQLWAGGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGHRD 212 (842)
Q Consensus 134 ~~~~l~~~-~~~l~~~~D~~vrvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~V~~la~dpdg~~LaSGs~D 212 (842)
.+.+++.+ .+.+|+++++ |..+|. ++..... . +. . .....+.++. ++.||.|+.+
T Consensus 61 ~~~~~~~~~~g~l~v~t~~-l~~~d~-~g~~~~~------------~---~~----~-~~~~~~~~~~--~~~l~v~t~~ 116 (330)
T 3hxj_A 61 IECRPSIGKDGTIYFGSDK-VYAINP-DGTEKWR------------F---DT----K-KAIVSDFTIF--EDILYVTSMD 116 (330)
T ss_dssp EEECCEETTTTEECCSSCE-EEEECC-CGGGGGG------------S---CC----------CCEEEE--TTEEEEECTT
T ss_pred cccceEEecCCcEEEecCc-EEEECC-CCcEEEE------------E---EC----C-CCcccCceEE--CCEEEEEecC
Confidence 34566665 5599998877 888885 3322211 0 00 0 0011112222 5789999999
Q ss_pred CcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCCCEEEeeCCCcEEEEeCCCccceeecCCCceeeeEEEEee
Q 003171 213 GRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGDLWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVER 292 (842)
Q Consensus 213 GtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~L~SgS~DgtIrvWd~~t~~~~l~~~~~~~~~~~l~~~~ 292 (842)
+.+..+|.. + +.......+...+.++++.++|.||.|+.++.|..+|.. ++........
T Consensus 117 ~~l~~~d~~-g--------~~~~~~~~~~~~~~~~~~~~~g~l~vgt~~~~l~~~d~~-g~~~~~~~~~----------- 175 (330)
T 3hxj_A 117 GHLYAINTD-G--------TEKWRFKTKKAIYATPIVSEDGTIYVGSNDNYLYAINPD-GTEKWRFKTN----------- 175 (330)
T ss_dssp SEEEEECTT-S--------CEEEEEECSSCCCSCCEECTTSCEEEECTTSEEEEECTT-SCEEEEEECS-----------
T ss_pred CEEEEEcCC-C--------CEEEEEcCCCceeeeeEEcCCCEEEEEcCCCEEEEECCC-CCEeEEEecC-----------
Confidence 999999988 5 444444455566778888889999999999999999986 3322211100
Q ss_pred ceeecccceeccceeeeecCCEEEEEEcCCCCEEEEeCCCcEEEEEccCCcEEEEeecCCceEeeeecccCCCcccccce
Q 003171 293 SYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGFLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEF 372 (842)
Q Consensus 293 s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~ 372 (842)
...+..++.+. +..||.++ +.+..+| .+++.+..+....... .....+.
T Consensus 176 ------------------~~~~~~~~~d~-~g~l~v~t-~~l~~~d-~~g~~~~~~~~~~~~~--------~~~~~~~-- 224 (330)
T 3hxj_A 176 ------------------DAITSAASIGK-DGTIYFGS-DKVYAIN-PDGTEKWNFYAGYWTV--------TRPAISE-- 224 (330)
T ss_dssp ------------------SCCCSCCEECT-TCCEEEES-SSEEEEC-TTSCEEEEECCSSCCC--------SCCEECT--
T ss_pred ------------------CCceeeeEEcC-CCEEEEEe-CEEEEEC-CCCcEEEEEccCCcce--------eceEECC--
Confidence 01122233333 44577777 8899999 7777654443211100 0000000
Q ss_pred EEEEEecCCCCccceeeeEeecCcceEEecC-CcEEEEeecCcc----ccCCCceEEEEECCCCcEEEEeCCCeEEEEcC
Q 003171 373 KTKIVTSSKKDKAQSSFGFFQRSRNAIMGAA-DAVRRVAAKGGF----GDDNRRTEALTTSIDGMIWTGGANGLLLQWDP 447 (842)
Q Consensus 373 ~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~-~~v~~v~~~g~~----~~~~~~v~al~~s~dg~l~Sgs~DgtIrlWD~ 447 (842)
...+++++. .++.++...|.. ......+.++++.++|.||.++.+|.|..+|.
T Consensus 225 ----------------------~g~l~v~t~~~gl~~~~~~g~~~~~~~~~~~~~~~~~~~~~g~l~v~t~~ggl~~~d~ 282 (330)
T 3hxj_A 225 ----------------------DGTIYVTSLDGHLYAINPDGTEKWRFKTGKRIESSPVIGNTDTIYFGSYDGHLYAINP 282 (330)
T ss_dssp ----------------------TSCEEEEETTTEEEEECTTSCEEEEEECSSCCCSCCEECTTSCEEEECTTCEEEEECT
T ss_pred ----------------------CCeEEEEcCCCeEEEECCCCCEeEEeeCCCCccccceEcCCCeEEEecCCCCEEEECC
Confidence 112344443 344444322211 11112223455677899999999988999999
Q ss_pred CCCeeeeeecCCccEEEEEe-cCCEEEEEecCcEEEEEeCC
Q 003171 448 NGNRLQDFQYLPFAVQCLCT-FGSQIWVGYMNGIVQVLDLE 487 (842)
Q Consensus 448 ~g~~l~~l~~H~~~V~sls~-dG~~LasGs~DgtIrlWD~~ 487 (842)
+|+.+..+......+.++.. .+..||.|+.+|.+++...+
T Consensus 283 ~g~~~~~~~~~~~~~~~~~~d~~g~l~~gt~~G~~~~~~~~ 323 (330)
T 3hxj_A 283 DGTEKWNFETGSWIIATPVIDENGTIYFGTRNGKFYALFNL 323 (330)
T ss_dssp TSCEEEEEECSSCCCSCCEECTTCCEEEECTTSCEEEEEC-
T ss_pred CCcEEEEEEcCCccccceEEcCCCEEEEEcCCCeEEEEecc
Confidence 88877777655666777776 34579999999999988764
|
| >2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A* | Back alignment and structure |
|---|
Probab=98.79 E-value=6.5e-07 Score=107.77 Aligned_cols=93 Identities=5% Similarity=0.018 Sum_probs=65.4
Q ss_pred CEEEEeCCCCccccccccccccCCCCCCCCCCeeeeeecCCCeEEEEEcCCCCEEEEEeCCCc----------------E
Q 003171 152 GLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGHRDGR----------------I 215 (842)
Q Consensus 152 ~vrvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~V~~la~dpdg~~LaSGs~DGt----------------I 215 (842)
.|++||+++..... ..+. ...+.+++|+|||+.|+.++.|+. |
T Consensus 152 ~i~v~d~~tg~~~~--------------------~~~~-~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~v 210 (710)
T 2xdw_A 152 TIKFMKVDGAKELP--------------------DVLE-RVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKL 210 (710)
T ss_dssp EEEEEETTTTEEEE--------------------EEEE-EECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEE
T ss_pred EEEEEECCCCCCCc--------------------cccc-CcccceEEEEeCCCEEEEEEECCccccccccccccCCCCEE
Confidence 89999998654221 1111 123567899999999999998876 9
Q ss_pred EEEECCCCccCCCCCcceeEEe--cccCCcEEEEEEecCCC-EEEeeC-----CCcEEEEeCCC
Q 003171 216 MCWKMNARLLDSDDGFGEVLSW--QAHRGPVLSLCISSYGD-LWSGSE-----GGGIKIWPWEA 271 (842)
Q Consensus 216 rlWdl~~g~~~~~~~~~~~~~l--~gH~~~V~slafs~dG~-L~SgS~-----DgtIrvWd~~t 271 (842)
++|++.++.. .....+ ..|...+.++.|||||+ |+.++. +..|.+||+.+
T Consensus 211 ~~~~l~t~~~------~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~ 268 (710)
T 2xdw_A 211 YYHVLGTDQS------EDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQ 268 (710)
T ss_dssp EEEETTSCGG------GCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGG
T ss_pred EEEECCCCcc------cceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcc
Confidence 9999988620 112333 34667789999999998 554443 67899999865
|
| >3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A | Back alignment and structure |
|---|
Probab=98.78 E-value=2.9e-06 Score=102.87 Aligned_cols=318 Identities=15% Similarity=0.196 Sum_probs=177.0
Q ss_pred eeEEEEecC-CEEEEecCCCEEEEeCCCCccccccccccccCCCCCCCCCCeeeeeecCCCeEEEEEcCCCCEEEEEeCC
Q 003171 134 FLRTIVCTE-EQLWAGGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGHRD 212 (842)
Q Consensus 134 ~~~~l~~~~-~~l~~~~D~~vrvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~V~~la~dpdg~~LaSGs~D 212 (842)
.+++|..+. +.||+|++++|.+++..+...... .. ....+ ..+. ...|.|+..|.+| .||.|+..
T Consensus 233 ~i~~i~~d~~g~lWigT~~Gl~~~~~~~~~~~~~--------~~--~~~~~--~~l~-~~~i~~i~~D~~g-~lWiGT~~ 298 (758)
T 3ott_A 233 SIKSLALDGNGDLLAGTDNGLYVYHNDTTPLQHI--------IH--DSRNI--QSLT-NNIIWNIFADQEH-NIWLGTDY 298 (758)
T ss_dssp EEEEEEECTTCCEEEEETTEEEEECCTTSCCEEE--------CC--CTTCT--TSCS-CSCEEEEEECTTC-CEEEEESS
T ss_pred eEEEEEEcCCCCEEEEeCCceeEEecCCCcEEEE--------Ec--CCCCc--CcCC-cCeEEEEEEcCCC-CEEEEeCC
Confidence 466777764 489999999999998764321100 00 00001 1233 5679999999654 68999988
Q ss_pred CcEEEEECCCCccCCCCCcceeEEec-----ccCCcEEEEEEecCCCEEEeeCCCcEEEEeCCCcc-ceeecCCCceeee
Q 003171 213 GRIMCWKMNARLLDSDDGFGEVLSWQ-----AHRGPVLSLCISSYGDLWSGSEGGGIKIWPWEAIE-KALSLKPEERHTA 286 (842)
Q Consensus 213 GtIrlWdl~~g~~~~~~~~~~~~~l~-----gH~~~V~slafs~dG~L~SgS~DgtIrvWd~~t~~-~~l~~~~~~~~~~ 286 (842)
| +-+...... ++. .... .....|.+++.+++|.||.|+.+| +-.++..++. ..+.....
T Consensus 299 G-l~~~~~~~~-------~~~-~~~~~~~~~~~~~~v~~i~~D~~g~lWiGt~~G-l~~~~~~~~~~~~~~~~~~----- 363 (758)
T 3ott_A 299 G-ISLSRYNSA-------LQF-IPISQITGTGDGNQFYSLFRDSKGFYWFGGANG-LIRFTDPAGERHDAIWYRM----- 363 (758)
T ss_dssp S-EEEECCCC--------CEE-EEHHHHSCSCCCCBEEEEEECTTCCEEEEETTE-EEEESCTTSSCCCCEEECT-----
T ss_pred c-ccccccCCc-------eeE-EecccCCCCCCCceEEEEEEcCCCCEEEeeCCc-ceeecccccccceeEEecc-----
Confidence 8 433332211 111 1111 123579999999999999998664 5555554321 11111000
Q ss_pred EEEEeeceeecccceeccceeeeecCCEEEEEEcCCCCEEEEeCCCcEEEEEccCCcEEEEeecCCceEeeeecccCCCc
Q 003171 287 ALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGFLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDF 366 (842)
Q Consensus 287 ~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~ 366 (842)
. .....++...|.+++.+. ...||.++++++..+|..++++.......... ..+...
T Consensus 364 --------------~--~~~~~l~~~~v~~i~~d~-~g~lWigt~~GL~~~~~~~~~~~~~~~~~~~~----~~~~~~-- 420 (758)
T 3ott_A 364 --------------G--DKTYPLSHNRIRHIYEDK-EQQLWIATDGSINRYDYATRQFIHYNIVDNTG----TYNTNW-- 420 (758)
T ss_dssp --------------T--CSSSCCSCSCEEEEEECT-TSCEEEEETTEEEEEETTTTEEEEEEEECCC------CBSSS--
T ss_pred --------------C--CcCCCCCCCceEEEEECC-CCCEEEEeCCcHhhcCcCCCcEEEeecCCCcC----CCCCce--
Confidence 0 000011234577777764 45799988889999999988763321111100 000000
Q ss_pred ccccceEEEEEecCCCCccceeeeEe-ecCcceEEecC-CcEEEEeec-------Cccc---------c-CCCceEEEEE
Q 003171 367 AMEDEFKTKIVTSSKKDKAQSSFGFF-QRSRNAIMGAA-DAVRRVAAK-------GGFG---------D-DNRRTEALTT 427 (842)
Q Consensus 367 ~~~~~~~~~~~s~~~~~~~~~s~~~~-~~~~~~~~g~~-~~v~~v~~~-------g~~~---------~-~~~~v~al~~ 427 (842)
+ ..+. +.....|+|+. .|+.++... +.+. + ....|.++..
T Consensus 421 -----v----------------~~i~~d~~g~lWigT~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~ 479 (758)
T 3ott_A 421 -----T----------------YYIFEDTAGQLWISTCLGGIFVVDKHKLMQSTSGQYIAEQNYSVHNGLSGMFINQIIP 479 (758)
T ss_dssp -----E----------------EEEEECTTSEEEEEESSSCEEEEEHHHHHHCCSSEEECSEEECGGGTCSCSCEEEEEE
T ss_pred -----E----------------EEEEEcCCCCEEEEECCCceEEEccccccccCCcceecccccccccccccceeeeEEE
Confidence 0 0111 11235677775 477776532 1121 0 1235888999
Q ss_pred CCCCcEEE--EeCCCeEEEEcCCCCeeeeeec----CCccEEEEEecCC-EEEEEecCcEEEEEeCCCcccccc---ccc
Q 003171 428 SIDGMIWT--GGANGLLLQWDPNGNRLQDFQY----LPFAVQCLCTFGS-QIWVGYMNGIVQVLDLEGNLLGGW---VAH 497 (842)
Q Consensus 428 s~dg~l~S--gs~DgtIrlWD~~g~~l~~l~~----H~~~V~sls~dG~-~LasGs~DgtIrlWD~~g~~i~~l---~gH 497 (842)
+.+|.||. |+.+| |..+|.....+..+.. ....|.++..|.+ .||.|+.. .|..+|.++.....+ ...
T Consensus 480 d~~g~lWi~~~t~~G-l~~~d~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~lWigt~~-Gl~~~~~~~~~~~~~~~~gl~ 557 (758)
T 3ott_A 480 DNEGNVWVLLYNNKG-IDKINPRTREVTKLFADELTGEKSPNYLLCDEDGLLWVGFHG-GVMRINPKDESQQSISFGSFS 557 (758)
T ss_dssp CTTSCEEEEETTCSS-EEEEETTTTEEEEECTTTSCGGGCEEEEEECTTSCEEEEETT-EEEEECC--CCCCBCCCCC--
T ss_pred cCCCCEEEEccCCCC-cEEEeCCCCceEEecCCCcCCCcccceEEECCCCCEEEEecC-ceEEEecCCCceEEecccCCC
Confidence 99999997 55555 8889985444444421 1346888888754 88888864 688999864332222 122
Q ss_pred ccCEEEEEeCCCEEEEEcCCCCeeeccccC
Q 003171 498 SSPVIKMAVGAGYIFTLANHGGIRGWNVTS 527 (842)
Q Consensus 498 ~~~V~sla~dg~~l~S~S~DgtIrvWd~~~ 527 (842)
...|.++..+.. .++.+++++|..++..+
T Consensus 558 ~~~i~~i~~~~g-~lWi~t~~Gl~~~~~~~ 586 (758)
T 3ott_A 558 NNEILSMTCVKN-SIWVSTTNGLWIIDRKT 586 (758)
T ss_dssp -CCEEEEEEETT-EEEEEESSCEEEEETTT
T ss_pred ccceEEEEECCC-CEEEECCCCeEEEcCCC
Confidence 456888876643 44555567788887543
|
| >3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=98.78 E-value=5.6e-07 Score=96.42 Aligned_cols=69 Identities=14% Similarity=0.061 Sum_probs=55.3
Q ss_pred CCeEEEEEcCCCC-EEEEEeCCCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCCCEEEeeC-CCcEEEEeC
Q 003171 192 SSVMCMVGDEASG-VVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGDLWSGSE-GGGIKIWPW 269 (842)
Q Consensus 192 ~~V~~la~dpdg~-~LaSGs~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~L~SgS~-DgtIrvWd~ 269 (842)
......+++|+|+ ++|++..++.|..|+..+ + ...+..+.+.+.+++++++|+||.+.. ++.|.+|+.
T Consensus 45 ~~~egp~~~~~g~~l~~~d~~~~~i~~~~~~g---------~-~~~~~~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~ 114 (305)
T 3dr2_A 45 TWSEGPAWWEAQRTLVWSDLVGRRVLGWREDG---------T-VDVLLDATAFTNGNAVDAQQRLVHCEHGRRAITRSDA 114 (305)
T ss_dssp SSEEEEEEEGGGTEEEEEETTTTEEEEEETTS---------C-EEEEEESCSCEEEEEECTTSCEEEEETTTTEEEEECT
T ss_pred cCccCCeEeCCCCEEEEEECCCCEEEEEeCCC---------C-EEEEeCCCCccceeeECCCCCEEEEECCCCEEEEECC
Confidence 3566788999998 889999999999999843 2 345556677899999999999887765 478999987
Q ss_pred C
Q 003171 270 E 270 (842)
Q Consensus 270 ~ 270 (842)
+
T Consensus 115 ~ 115 (305)
T 3dr2_A 115 D 115 (305)
T ss_dssp T
T ss_pred C
Confidence 5
|
| >1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum} | Back alignment and structure |
|---|
Probab=98.75 E-value=4.5e-07 Score=109.78 Aligned_cols=230 Identities=9% Similarity=0.012 Sum_probs=132.6
Q ss_pred CeEEEEEcCCCCEEEEEeCC-----CcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCCC-EEEeeCCCc---
Q 003171 193 SVMCMVGDEASGVVWSGHRD-----GRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGG--- 263 (842)
Q Consensus 193 ~V~~la~dpdg~~LaSGs~D-----GtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~Dgt--- 263 (842)
.+..+++||||++|+.++.+ .+|++||++++ +. .....+...+.+++|+|| + |+.++.|+.
T Consensus 164 ~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg--------~~-~~~~~~~~~~~~~~wspD-~~l~~~~~~~~~~~ 233 (741)
T 1yr2_A 164 ALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADG--------KP-LADELKWVKFSGLAWLGN-DALLYSRFAEPKEG 233 (741)
T ss_dssp EEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTC--------CE-EEEEEEEEESCCCEESTT-SEEEEEECCCC---
T ss_pred EEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCC--------CC-CCccCCCceeccEEEECC-CEEEEEEecCcccc
Confidence 57889999999999887765 36999999997 22 222112222357899999 7 777766654
Q ss_pred -----------EEEEeCCCccc--eeecCCCceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcCCCCEEEEeC
Q 003171 264 -----------IKIWPWEAIEK--ALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG 330 (842)
Q Consensus 264 -----------IrvWd~~t~~~--~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s 330 (842)
|++|++.+... .+.+.... + ...+..+..++++..|+..+
T Consensus 234 ~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~-----------------~----------~~~~~~~~~SpDG~~l~~~~ 286 (741)
T 1yr2_A 234 QAFQALNYNQTVWLHRLGTPQSADQPVFATPE-----------------L----------PKRGHGASVSSDGRWVVITS 286 (741)
T ss_dssp -----CCCCCEEEEEETTSCGGGCEEEECCTT-----------------C----------TTCEEEEEECTTSCEEEEEE
T ss_pred cccccCCCCCEEEEEECCCCchhCEEEeccCC-----------------C----------CeEEEEEEECCCCCEEEEEE
Confidence 88898865431 11111000 0 00123344555555444332
Q ss_pred -C-----CcEEEEEccCC--cEEEEeecCCceEeeeecccCCCcccccceEEEEEecCCCCccceeeeEeecCcceEEec
Q 003171 331 -F-----LSFALWDARTR--ELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGA 402 (842)
Q Consensus 331 -~-----~tI~lWD~~tg--~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~ 402 (842)
+ ..|.+||+.++ ++.+.+..+..
T Consensus 287 ~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~------------------------------------------------- 317 (741)
T 1yr2_A 287 SEGTDPVNTVHVARVTNGKIGPVTALIPDLK------------------------------------------------- 317 (741)
T ss_dssp ECTTCSCCEEEEEEEETTEECCCEEEECSSS-------------------------------------------------
T ss_pred EccCCCcceEEEEECCCCCCcccEEecCCCC-------------------------------------------------
Confidence 2 25788888765 20122211000
Q ss_pred CCcEEEEeecCccccCCCceEEEEECCCCc-EEEEeC----CCeEEEEcCCC--Ceeeeee-cCCccEEEEEecCC-EEE
Q 003171 403 ADAVRRVAAKGGFGDDNRRTEALTTSIDGM-IWTGGA----NGLLLQWDPNG--NRLQDFQ-YLPFAVQCLCTFGS-QIW 473 (842)
Q Consensus 403 ~~~v~~v~~~g~~~~~~~~v~al~~s~dg~-l~Sgs~----DgtIrlWD~~g--~~l~~l~-~H~~~V~sls~dG~-~La 473 (842)
.+.... +++|. |+..+. ++.|.+||+++ ...+.+. .+...+.++++++. .++
T Consensus 318 ------------------~~~~~~-~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~l~~~~~~~~~lv~ 378 (741)
T 1yr2_A 318 ------------------AQWDFV-DGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKDNLESVGIAGNRLFA 378 (741)
T ss_dssp ------------------SCEEEE-EEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSSEEEEEEEEBTEEEE
T ss_pred ------------------ceEEEE-eccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCCCeEEEEEEECCEEEE
Confidence 000111 13333 554443 34599999943 3444444 44445666766554 667
Q ss_pred EEecCcEEEEEe--CCCccccccccc-ccCEEEEE--eCCCEEE----EEcCCCCeeeccccC
Q 003171 474 VGYMNGIVQVLD--LEGNLLGGWVAH-SSPVIKMA--VGAGYIF----TLANHGGIRGWNVTS 527 (842)
Q Consensus 474 sGs~DgtIrlWD--~~g~~i~~l~gH-~~~V~sla--~dg~~l~----S~S~DgtIrvWd~~~ 527 (842)
+...|+..+||. ++|+..+.+..+ .+.|..++ ++++.++ |..+.++|.+||+.+
T Consensus 379 ~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~t 441 (741)
T 1yr2_A 379 SYIHDAKSQVLAFDLDGKPAGAVSLPGIGSASGLSGRPGDRHAYLSFSSFTQPATVLALDPAT 441 (741)
T ss_dssp EEEETTEEEEEEEETTSCEEEECBCSSSCEEEEEECCBTCSCEEEEEEETTEEEEEEEEETTT
T ss_pred EEEECCEEEEEEEeCCCCceeeccCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCC
Confidence 777898877775 557766666653 56677776 4666555 445678899999765
|
| >3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=98.75 E-value=3.4e-07 Score=100.44 Aligned_cols=107 Identities=9% Similarity=-0.080 Sum_probs=67.7
Q ss_pred CCCceEEEEECC-CCc-EEEEeCC------CeEEEEcCCCCeeeeeecCC--ccEEEE--EecCCEEEEEecC-----cE
Q 003171 418 DNRRTEALTTSI-DGM-IWTGGAN------GLLLQWDPNGNRLQDFQYLP--FAVQCL--CTFGSQIWVGYMN-----GI 480 (842)
Q Consensus 418 ~~~~v~al~~s~-dg~-l~Sgs~D------gtIrlWD~~g~~l~~l~~H~--~~V~sl--s~dG~~LasGs~D-----gt 480 (842)
+...+..+.++| ||. |+..+.+ ..|.+||+.+...+.+..+. ..+..+ ++||++|+.++.+ +.
T Consensus 186 ~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~ 265 (396)
T 3c5m_A 186 DTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVRKIKEHAEGESCTHEFWIPDGSAMAYVSYFKGQTDRV 265 (396)
T ss_dssp ESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCEESSCCCTTEEEEEEEECTTSSCEEEEEEETTTCCEE
T ss_pred CCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCceeEeeccCCCccccceEECCCCCEEEEEecCCCCccce
Confidence 344567788999 676 6665543 35888898665555554432 245544 5689987776654 56
Q ss_pred EEEEeCC-Ccc--cccccccccCEEEEEe-CCCEEEEEc----------------CCCCeeeccccC
Q 003171 481 VQVLDLE-GNL--LGGWVAHSSPVIKMAV-GAGYIFTLA----------------NHGGIRGWNVTS 527 (842)
Q Consensus 481 IrlWD~~-g~~--i~~l~gH~~~V~sla~-dg~~l~S~S----------------~DgtIrvWd~~~ 527 (842)
|++||++ ++. +..+.++. ....+ ||+.++.++ .+..|.+||+..
T Consensus 266 l~~~d~~~g~~~~l~~~~~~~---~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~ 329 (396)
T 3c5m_A 266 IYKANPETLENEEVMVMPPCS---HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKA 329 (396)
T ss_dssp EEEECTTTCCEEEEEECCSEE---EEEECSSSSEEEEEECCC----------CCCCCCEEEEEETTT
T ss_pred EEEEECCCCCeEEeeeCCCCC---CCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEeccc
Confidence 9999987 443 22233332 34456 899888654 246788888654
|
| >3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae} | Back alignment and structure |
|---|
Probab=98.75 E-value=4.4e-07 Score=96.42 Aligned_cols=181 Identities=12% Similarity=0.035 Sum_probs=117.7
Q ss_pred cCCCEEEeeCCCcEEEEeCCCccceeecCCCceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcCCCCEEEEeC
Q 003171 251 SYGDLWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG 330 (842)
Q Consensus 251 ~dG~L~SgS~DgtIrvWd~~t~~~~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s 330 (842)
|+..|++++.|+.|.+||.++++...++..+.. ..+..++..+++..++ +.
T Consensus 4 ~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~----------------------------~~~~~~~~~pdG~ilv-s~ 54 (276)
T 3no2_A 4 PQHLLVGGSGWNKIAIINKDTKEIVWEYPLEKG----------------------------WECNSVAATKAGEILF-SY 54 (276)
T ss_dssp CCEEEEECTTCSEEEEEETTTTEEEEEEECCTT----------------------------CCCCEEEECTTSCEEE-EC
T ss_pred CCcEEEeeCCCCEEEEEECCCCeEEEEeCCCcc----------------------------CCCcCeEECCCCCEEE-eC
Confidence 444478999999999999977765444322110 1233455566666665 44
Q ss_pred CCcEEEEEccCCcEEEEeecCCceEeeeecccCCCcccccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEe
Q 003171 331 FLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVA 410 (842)
Q Consensus 331 ~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~ 410 (842)
+.+|..||. +|+.+..+..+..
T Consensus 55 ~~~V~~~d~-~G~~~W~~~~~~~--------------------------------------------------------- 76 (276)
T 3no2_A 55 SKGAKMITR-DGRELWNIAAPAG--------------------------------------------------------- 76 (276)
T ss_dssp BSEEEEECT-TSCEEEEEECCTT---------------------------------------------------------
T ss_pred CCCEEEECC-CCCEEEEEcCCCC---------------------------------------------------------
Confidence 568999998 7877655432100
Q ss_pred ecCccccCCCceEEEEECCCCc-EEEEeC-CCeEEEEcCCCCeeeeeec------CCccEE--EEEecCCEEEEEecCcE
Q 003171 411 AKGGFGDDNRRTEALTTSIDGM-IWTGGA-NGLLLQWDPNGNRLQDFQY------LPFAVQ--CLCTFGSQIWVGYMNGI 480 (842)
Q Consensus 411 ~~g~~~~~~~~v~al~~s~dg~-l~Sgs~-DgtIrlWD~~g~~l~~l~~------H~~~V~--sls~dG~~LasGs~Dgt 480 (842)
..+.++.+.+||. +++.+. ++.|..+|.+|+.+.++.. +..... ++.++|.+|++.+.++.
T Consensus 77 ---------~~~~~~~~~~dG~~lv~~~~~~~~v~~vd~~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~ 147 (276)
T 3no2_A 77 ---------CEMQTARILPDGNALVAWCGHPSTILEVNMKGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATSE 147 (276)
T ss_dssp ---------CEEEEEEECTTSCEEEEEESTTEEEEEECTTSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETTTTE
T ss_pred ---------ccccccEECCCCCEEEEecCCCCEEEEEeCCCCEEEEEeccCCCCcccccccCceECCCCCEEEEecCCCE
Confidence 0122344567777 455555 6677777888887776652 111222 33458999999999999
Q ss_pred EEEEeCCCcccccccccccCEEEEE--eCCCEEEEEcCCCCeeeccccCC
Q 003171 481 VQVLDLEGNLLGGWVAHSSPVIKMA--VGAGYIFTLANHGGIRGWNVTSP 528 (842)
Q Consensus 481 IrlWD~~g~~i~~l~gH~~~V~sla--~dg~~l~S~S~DgtIrvWd~~~~ 528 (842)
|.+||.+|+.+-++..+.. +.++. +++..+++++.++.|..+|..+.
T Consensus 148 v~~~d~~G~~~w~~~~~~~-~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG 196 (276)
T 3no2_A 148 VREIAPNGQLLNSVKLSGT-PFSSAFLDNGDCLVACGDAHCFVQLNLESN 196 (276)
T ss_dssp EEEECTTSCEEEEEECSSC-CCEEEECTTSCEEEECBTTSEEEEECTTTC
T ss_pred EEEECCCCCEEEEEECCCC-ccceeEcCCCCEEEEeCCCCeEEEEeCcCC
Confidence 9999999998777766533 33433 47888888888888888886543
|
| >3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B | Back alignment and structure |
|---|
Probab=98.74 E-value=2.8e-06 Score=90.68 Aligned_cols=215 Identities=14% Similarity=0.178 Sum_probs=126.8
Q ss_pred eEEEEEcCC-CCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCCCEEEeeCCCcEEEEeCCCc
Q 003171 194 VMCMVGDEA-SGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGDLWSGSEGGGIKIWPWEAI 272 (842)
Q Consensus 194 V~~la~dpd-g~~LaSGs~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~L~SgS~DgtIrvWd~~t~ 272 (842)
.-+.+++|+ +.++|+...++.|..||..++ . ...+ .+...+.+++++++|+||.+. ++.|.+||.+++
T Consensus 15 ~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~--------~-~~~~-~~~~~~~~i~~~~dG~l~v~~-~~~l~~~d~~~g 83 (297)
T 3g4e_A 15 GESPVWEEVSNSLLFVDIPAKKVCRWDSFTK--------Q-VQRV-TMDAPVSSVALRQSGGYVATI-GTKFCALNWKEQ 83 (297)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEETTTC--------C-EEEE-ECSSCEEEEEEBTTSSEEEEE-TTEEEEEETTTT
T ss_pred ccCCeEECCCCEEEEEECCCCEEEEEECCCC--------c-EEEE-eCCCceEEEEECCCCCEEEEE-CCeEEEEECCCC
Confidence 345678884 678888889999999999885 2 2222 245689999999999988776 568999998764
Q ss_pred cceeecCCCceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcCCCCEEEEeCCC-----------cEEEEEccC
Q 003171 273 EKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGFL-----------SFALWDART 341 (842)
Q Consensus 273 ~~~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s~~-----------tI~lWD~~t 341 (842)
+......... +. +......++.++++. +|.++.. .-.||.+.
T Consensus 84 ~~~~~~~~~~----------------------~~---~~~~~~di~~d~dG~-l~~~~~~~~~~~~~~~~~~~~l~~~d- 136 (297)
T 3g4e_A 84 SAVVLATVDN----------------------DK---KNNRFNDGKVDPAGR-YFAGTMAEETAPAVLERHQGALYSLF- 136 (297)
T ss_dssp EEEEEEECCT----------------------TC---SSEEEEEEEECTTSC-EEEEEEECCSBTTBCCTTCEEEEEEC-
T ss_pred cEEEEEecCC----------------------CC---CCCCCCCEEECCCCC-EEEecCCcccccccccCCCcEEEEEE-
Confidence 3211000000 00 011234566666554 5543210 01111110
Q ss_pred CcEEEEeecCCceEeeeecccCCCcccccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEeecCccccCCCc
Q 003171 342 RELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRR 421 (842)
Q Consensus 342 g~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~ 421 (842)
.. . .+..+. .....
T Consensus 137 -------------------------------------~~--g---------------------~~~~~~------~~~~~ 150 (297)
T 3g4e_A 137 -------------------------------------PD--H---------------------HVKKYF------DQVDI 150 (297)
T ss_dssp -------------------------------------TT--S---------------------CEEEEE------EEESB
T ss_pred -------------------------------------CC--C---------------------CEEEEe------ecccc
Confidence 00 0 000000 01122
Q ss_pred eEEEEECCCCc-E-EEEeCCCeEEEEcC---CCCe-----eeeeecCCccEEEEEec--CCEEEEEe-cCcEEEEEeCC-
Q 003171 422 TEALTTSIDGM-I-WTGGANGLLLQWDP---NGNR-----LQDFQYLPFAVQCLCTF--GSQIWVGY-MNGIVQVLDLE- 487 (842)
Q Consensus 422 v~al~~s~dg~-l-~Sgs~DgtIrlWD~---~g~~-----l~~l~~H~~~V~sls~d--G~~LasGs-~DgtIrlWD~~- 487 (842)
...++++|||+ | ++.+.++.|.+||. +|.. +..+..+......++.| |. ||++. .++.|.+||.+
T Consensus 151 pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~-lwva~~~~~~v~~~d~~t 229 (297)
T 3g4e_A 151 SNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGK-LWVACYNGGRVIRLDPVT 229 (297)
T ss_dssp EEEEEECTTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSC-EEEEEETTTEEEEECTTT
T ss_pred ccceEEcCCCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCC-EEEEEcCCCEEEEEcCCC
Confidence 34688999986 5 45556788999985 3432 22233334456677664 64 55554 57889999997
Q ss_pred CcccccccccccCEEEEEeC---CCEEEE
Q 003171 488 GNLLGGWVAHSSPVIKMAVG---AGYIFT 513 (842)
Q Consensus 488 g~~i~~l~gH~~~V~sla~d---g~~l~S 513 (842)
|+++..+..+...++++++. ++.|+-
T Consensus 230 G~~~~~i~~p~~~~t~~~f~g~d~~~L~v 258 (297)
T 3g4e_A 230 GKRLQTVKLPVDKTTSCCFGGKNYSEMYV 258 (297)
T ss_dssp CCEEEEEECSSSBEEEEEEESGGGCEEEE
T ss_pred ceEEEEEECCCCCceEEEEeCCCCCEEEE
Confidence 89888888887889998864 355543
|
| >3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482} | Back alignment and structure |
|---|
Probab=98.70 E-value=2.8e-06 Score=95.55 Aligned_cols=236 Identities=13% Similarity=0.096 Sum_probs=138.5
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCCC-EEEeeCCC--cEEEEe
Q 003171 192 SSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGG--GIKIWP 268 (842)
Q Consensus 192 ~~V~~la~dpdg~~LaSGs~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~Dg--tIrvWd 268 (842)
.....|+++++|+++++...++.|++||++++ .+..+.+...... ++|+++|+ |+.+..++ .|.+|+
T Consensus 131 ~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g---------~~~~~~~~~~~~~-ia~~~~g~~l~~~d~~~~~~I~~~d 200 (409)
T 3hrp_A 131 KYMWGIAAVGNNTVLAYQRDDPRVRLISVDDN---------KVTTVHPGFKGGK-PAVTKDKQRVYSIGWEGTHTVYVYM 200 (409)
T ss_dssp CCEEEEEECSTTEEEEEETTTTEEEEEETTTT---------EEEEEEETCCBCB-CEECTTSSEEEEEBSSTTCEEEEEE
T ss_pred CCceEEEEeCCCCEEEEecCCCcEEEEECCCC---------EEEEeeccCCCCc-eeEecCCCcEEEEecCCCceEEEEE
Confidence 36788999999998888888899999999875 2333322222333 99999997 67777655 677777
Q ss_pred CCCccceeecCCCceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcCCCCEEEEeC-CCcEEEEEccCCcEEEE
Q 003171 269 WEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKV 347 (842)
Q Consensus 269 ~~t~~~~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s-~~tI~lWD~~tg~~l~~ 347 (842)
..+......+ .. +... .......++.++.+..|+.+. .+.|..||..++.. ..
T Consensus 201 ~~~~~~~~~~-------g~---------~~~~---------~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~-~~ 254 (409)
T 3hrp_A 201 KASGWAPTRI-------GQ---------LGST---------FSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEV-TL 254 (409)
T ss_dssp GGGTTCEEEE-------EE---------CCTT---------SCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCE-EE
T ss_pred cCCCceeEEe-------ee---------ccch---------hcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCE-EE
Confidence 6542211000 00 0000 011233456666455555543 35688999887653 22
Q ss_pred eecCCceEeeeecccCCCcccccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEeecCccccCCCceEEEEE
Q 003171 348 FNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTT 427 (842)
Q Consensus 348 l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~al~~ 427 (842)
+..... ... . . ......+++
T Consensus 255 ~~~~~~------------------------~g~----------------------------------~-~-~~P~~~ia~ 274 (409)
T 3hrp_A 255 IKQLEL------------------------SGS----------------------------------L-G-TNPGPYLIY 274 (409)
T ss_dssp EEECCC------------------------CSC----------------------------------C-C-CSSCCEEEE
T ss_pred Eecccc------------------------cCC----------------------------------C-C-CCccccEEE
Confidence 211000 000 0 0 000015678
Q ss_pred CC-CCcEEEE-eCCCeEEEEcCCCCeeeeeecCC---------------ccEEEEEe--cCCEEEEEe-cCcEEEEEeCC
Q 003171 428 SI-DGMIWTG-GANGLLLQWDPNGNRLQDFQYLP---------------FAVQCLCT--FGSQIWVGY-MNGIVQVLDLE 487 (842)
Q Consensus 428 s~-dg~l~Sg-s~DgtIrlWD~~g~~l~~l~~H~---------------~~V~sls~--dG~~LasGs-~DgtIrlWD~~ 487 (842)
+| ++.|+.+ ..++.|+.||.+|+ +.++.++. .....++. +|...++-+ .++.|++||+.
T Consensus 275 ~p~~g~lyv~d~~~~~I~~~~~~g~-~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~ 353 (409)
T 3hrp_A 275 YFVDSNFYMSDQNLSSVYKITPDGE-CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDIL 353 (409)
T ss_dssp ETTTTEEEEEETTTTEEEEECTTCC-EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETT
T ss_pred eCCCCEEEEEeCCCCEEEEEecCCC-EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECC
Confidence 88 5776544 45788999998876 44444442 33566665 577555555 68899999954
Q ss_pred -Cccccccccc---------------ccCEEEEEe--CCCEEEEEcCCCCeeeccc
Q 003171 488 -GNLLGGWVAH---------------SSPVIKMAV--GAGYIFTLANHGGIRGWNV 525 (842)
Q Consensus 488 -g~~i~~l~gH---------------~~~V~sla~--dg~~l~S~S~DgtIrvWd~ 525 (842)
|+ +.++.++ -.....|+. ++..+++-..++.||.+.+
T Consensus 354 ~G~-v~~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i~~ 408 (409)
T 3hrp_A 354 DGY-VSTVAGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRKYAV 408 (409)
T ss_dssp TTE-EEEEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEEEEEE
T ss_pred CCE-EEEEeCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEEEEEe
Confidence 54 4444444 245777775 4556667777778887654
|
| >3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A | Back alignment and structure |
|---|
Probab=98.67 E-value=1.9e-05 Score=95.77 Aligned_cols=317 Identities=15% Similarity=0.235 Sum_probs=182.5
Q ss_pred eeEEEEec-CCEEEEecCCCEEEEeCCCCccccccccccccCCCCCCCCCCeeeeeecCCCeEEEEEcCCCCEEEEEeCC
Q 003171 134 FLRTIVCT-EEQLWAGGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGHRD 212 (842)
Q Consensus 134 ~~~~l~~~-~~~l~~~~D~~vrvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~V~~la~dpdg~~LaSGs~D 212 (842)
.+.+|..+ ...||++++++|..+|..+...... . .+....+. ...|.++..+++++.||.|+..
T Consensus 147 ~i~~i~~d~~g~lWigt~~Gl~~~~~~~~~~~~~------------~--~~~~~~~~-~~~i~~i~~d~~~~~lWigt~~ 211 (758)
T 3ott_A 147 TIYSIIRTKDNQIYVGTYNGLCRYIPSNGKFEGI------------P--LPVHSSQS-NLFVNSLLEDTTRQCVWIGTEG 211 (758)
T ss_dssp CEEEEEECTTCCEEEEETTEEEEEETTTTEEEEE------------C--CCCCTTCS-SCCEEEEEEETTTTEEEEEEEE
T ss_pred eEEEEEEcCCCCEEEEeCCCHhhCccCCCceEEe------------c--CCCccccc-cceeEEEEEECCCCEEEEEECC
Confidence 57778777 4599999988999999754321100 0 00000011 3358999999888889999864
Q ss_pred CcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCCCEEEeeCCCcEEEEeCCCccceeecCCCceeeeEEEEee
Q 003171 213 GRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGDLWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVER 292 (842)
Q Consensus 213 GtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~L~SgS~DgtIrvWd~~t~~~~l~~~~~~~~~~~l~~~~ 292 (842)
-+..++..++. +.....+ ....|.+|+..++|.||.|+. +.+.+++..+.... .+...
T Consensus 212 -Gl~~~~~~~~~------~~~~~~l--~~~~i~~i~~d~~g~lWigT~-~Gl~~~~~~~~~~~-~~~~~----------- 269 (758)
T 3ott_A 212 -YLFQYFPSTGQ------IKQTEAF--HNNSIKSLALDGNGDLLAGTD-NGLYVYHNDTTPLQ-HIIHD----------- 269 (758)
T ss_dssp -EEEEEETTTTE------EEEEEEE--EEEEEEEEEECTTCCEEEEET-TEEEEECCTTSCCE-EECCC-----------
T ss_pred -CCeEEcCCCCe------EEeccCC--CCCeEEEEEEcCCCCEEEEeC-CceeEEecCCCcEE-EEEcC-----------
Confidence 46677876641 1111112 234699999999999999985 56778887543211 00000
Q ss_pred ceeecccceeccceeeeecCCEEEEEEcCCCCEEEEeCCCcEEEEEccCCcEEEEeecCCceEeeeecccCCCcccccce
Q 003171 293 SYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGFLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEF 372 (842)
Q Consensus 293 s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~ 372 (842)
......++...|.++..+. ...||.|++.++.+... +... +.+... .... ......+
T Consensus 270 ----------~~~~~~l~~~~i~~i~~D~-~g~lWiGT~~Gl~~~~~-~~~~-~~~~~~-------~~~~---~~~~~~v 326 (758)
T 3ott_A 270 ----------SRNIQSLTNNIIWNIFADQ-EHNIWLGTDYGISLSRY-NSAL-QFIPIS-------QITG---TGDGNQF 326 (758)
T ss_dssp ----------TTCTTSCSCSCEEEEEECT-TCCEEEEESSSEEEECC-CC-C-EEEEHH-------HHSC---SCCCCBE
T ss_pred ----------CCCcCcCCcCeEEEEEEcC-CCCEEEEeCCccccccc-CCce-eEEecc-------cCCC---CCCCceE
Confidence 0000112345677887764 45799988766655432 2111 111100 0000 0000000
Q ss_pred EEEEEecCCCCccceeeeE-eecCcceEEecCCcEEEEeec-C---cc---c-------cCCCceEEEEECCCCcEEEEe
Q 003171 373 KTKIVTSSKKDKAQSSFGF-FQRSRNAIMGAADAVRRVAAK-G---GF---G-------DDNRRTEALTTSIDGMIWTGG 437 (842)
Q Consensus 373 ~~~~~s~~~~~~~~~s~~~-~~~~~~~~~g~~~~v~~v~~~-g---~~---~-------~~~~~v~al~~s~dg~l~Sgs 437 (842)
..+ .+.....|+|+..|+.++... + .+ . -....|.++..+.+|.||.|+
T Consensus 327 ----------------~~i~~D~~g~lWiGt~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lWigt 390 (758)
T 3ott_A 327 ----------------YSLFRDSKGFYWFGGANGLIRFTDPAGERHDAIWYRMGDKTYPLSHNRIRHIYEDKEQQLWIAT 390 (758)
T ss_dssp ----------------EEEEECTTCCEEEEETTEEEEESCTTSSCCCCEEECTTCSSSCCSCSCEEEEEECTTSCEEEEE
T ss_pred ----------------EEEEEcCCCCEEEeeCCcceeecccccccceeEEeccCCcCCCCCCCceEEEEECCCCCEEEEe
Confidence 011 122346688887787777532 1 11 0 012458889999999999999
Q ss_pred CCCeEEEEcCCCCeeeeeec-------CCccEEEEEecC-CEEEEEecCcEEEEEeCCC------c-cc--cccc----c
Q 003171 438 ANGLLLQWDPNGNRLQDFQY-------LPFAVQCLCTFG-SQIWVGYMNGIVQVLDLEG------N-LL--GGWV----A 496 (842)
Q Consensus 438 ~DgtIrlWD~~g~~l~~l~~-------H~~~V~sls~dG-~~LasGs~DgtIrlWD~~g------~-~i--~~l~----g 496 (842)
.+ -|.++|........+.. ....|.++..|. ..||.|+..+.|.++|.+. + .. ..+. .
T Consensus 391 ~~-GL~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lWigT~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~l 469 (758)
T 3ott_A 391 DG-SINRYDYATRQFIHYNIVDNTGTYNTNWTYYIFEDTAGQLWISTCLGGIFVVDKHKLMQSTSGQYIAEQNYSVHNGL 469 (758)
T ss_dssp TT-EEEEEETTTTEEEEEEEECCC--CBSSSEEEEEECTTSEEEEEESSSCEEEEEHHHHHHCCSSEEECSEEECGGGTC
T ss_pred CC-cHhhcCcCCCcEEEeecCCCcCCCCCceEEEEEEcCCCCEEEEECCCceEEEccccccccCCcceeccccccccccc
Confidence 54 59999985433333321 235689998875 4899999888899998542 1 11 1111 1
Q ss_pred cccCEEEEEeCCCEEEEE--cCCCCeeeccccC
Q 003171 497 HSSPVIKMAVGAGYIFTL--ANHGGIRGWNVTS 527 (842)
Q Consensus 497 H~~~V~sla~dg~~l~S~--S~DgtIrvWd~~~ 527 (842)
....|.+|..|.+..++. ++.++|..+|..+
T Consensus 470 ~~~~i~~i~~d~~g~lWi~~~t~~Gl~~~d~~~ 502 (758)
T 3ott_A 470 SGMFINQIIPDNEGNVWVLLYNNKGIDKINPRT 502 (758)
T ss_dssp SCSCEEEEEECTTSCEEEEETTCSSEEEEETTT
T ss_pred ccceeeeEEEcCCCCEEEEccCCCCcEEEeCCC
Confidence 234599998876554554 7778888888543
|
| >2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1 | Back alignment and structure |
|---|
Probab=98.65 E-value=9.5e-06 Score=87.91 Aligned_cols=215 Identities=14% Similarity=0.090 Sum_probs=125.3
Q ss_pred EEEEEcCC-CCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCCCEEEeeCCCcEEEEeCCCcc
Q 003171 195 MCMVGDEA-SGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGDLWSGSEGGGIKIWPWEAIE 273 (842)
Q Consensus 195 ~~la~dpd-g~~LaSGs~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~L~SgS~DgtIrvWd~~t~~ 273 (842)
.+.+++|+ +.++|++..++.|.+|+..++ ....+. +...|.+++++++|++|.++.+ .|.+||..+++
T Consensus 52 egp~~~~~~~~l~~~d~~~~~i~~~d~~~~---------~~~~~~-~~~~v~~i~~~~dg~l~v~~~~-gl~~~d~~~g~ 120 (326)
T 2ghs_A 52 EGPTFDPASGTAWWFNILERELHELHLASG---------RKTVHA-LPFMGSALAKISDSKQLIASDD-GLFLRDTATGV 120 (326)
T ss_dssp EEEEEETTTTEEEEEEGGGTEEEEEETTTT---------EEEEEE-CSSCEEEEEEEETTEEEEEETT-EEEEEETTTCC
T ss_pred cCCeEeCCCCEEEEEECCCCEEEEEECCCC---------cEEEEE-CCCcceEEEEeCCCeEEEEECC-CEEEEECCCCc
Confidence 45678886 567888888999999999875 223332 3467999999999998777655 49999986643
Q ss_pred ceeecCCCceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcCCCCEEEEeCC------CcEEEEEccCCcEEEE
Q 003171 274 KALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGF------LSFALWDARTRELLKV 347 (842)
Q Consensus 274 ~~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s~------~tI~lWD~~tg~~l~~ 347 (842)
......... + .....+..++.++++. +|.++. ....||.+.++++...
T Consensus 121 ~~~~~~~~~----------------------~---~~~~~~~~i~~d~~G~-l~v~~~~~~~~~~~~~l~~~~~g~~~~~ 174 (326)
T 2ghs_A 121 LTLHAELES----------------------D---LPGNRSNDGRMHPSGA-LWIGTMGRKAETGAGSIYHVAKGKVTKL 174 (326)
T ss_dssp EEEEECSST----------------------T---CTTEEEEEEEECTTSC-EEEEEEETTCCTTCEEEEEEETTEEEEE
T ss_pred EEEEeeCCC----------------------C---CCCCCCCCEEECCCCC-EEEEeCCCcCCCCceEEEEEeCCcEEEe
Confidence 211000000 0 0011244566666554 454331 0112222112221000
Q ss_pred eecCCceEeeeecccCCCcccccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEeecCccccCCCceEEEEE
Q 003171 348 FNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTT 427 (842)
Q Consensus 348 l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~al~~ 427 (842)
. ........+++
T Consensus 175 ~--------------------------------------------------------------------~~~~~~~~i~~ 186 (326)
T 2ghs_A 175 F--------------------------------------------------------------------ADISIPNSICF 186 (326)
T ss_dssp E--------------------------------------------------------------------EEESSEEEEEE
T ss_pred e--------------------------------------------------------------------CCCcccCCeEE
Confidence 0 00012345778
Q ss_pred CCCCc-EEEE-eCCCeEEEEcCC---C-Ce-----eeeeecCCccEEEEEec--CCEEEEEe-cCcEEEEEeCCCccccc
Q 003171 428 SIDGM-IWTG-GANGLLLQWDPN---G-NR-----LQDFQYLPFAVQCLCTF--GSQIWVGY-MNGIVQVLDLEGNLLGG 493 (842)
Q Consensus 428 s~dg~-l~Sg-s~DgtIrlWD~~---g-~~-----l~~l~~H~~~V~sls~d--G~~LasGs-~DgtIrlWD~~g~~i~~ 493 (842)
++||+ ++.+ +.++.|.+||.. | +. +..+..+......++.| |. ||++. .++.|.+||.+|+.+..
T Consensus 187 s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~-lwva~~~~~~v~~~d~~g~~~~~ 265 (326)
T 2ghs_A 187 SPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGH-IWNARWGEGAVDRYDTDGNHIAR 265 (326)
T ss_dssp CTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSC-EEEEEETTTEEEEECTTCCEEEE
T ss_pred cCCCCEEEEEECCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCC-EEEEEeCCCEEEEECCCCCEEEE
Confidence 89986 5444 456789999973 5 32 22222233455667664 54 55554 46899999998888787
Q ss_pred ccccccCEEEEEe---CCCEEEEEc
Q 003171 494 WVAHSSPVIKMAV---GAGYIFTLA 515 (842)
Q Consensus 494 l~gH~~~V~sla~---dg~~l~S~S 515 (842)
+..+...+.++++ +++.|+.++
T Consensus 266 i~~~~~~~~~~af~g~d~~~L~vt~ 290 (326)
T 2ghs_A 266 YEVPGKQTTCPAFIGPDASRLLVTS 290 (326)
T ss_dssp EECSCSBEEEEEEESTTSCEEEEEE
T ss_pred EECCCCCcEEEEEecCCCCEEEEEe
Confidence 8777778988885 345554333
|
| >3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ... | Back alignment and structure |
|---|
Probab=98.63 E-value=8e-06 Score=90.70 Aligned_cols=277 Identities=9% Similarity=-0.006 Sum_probs=156.0
Q ss_pred EEEcCCCCEEEEEeC-----CCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCCC-EEEee----------C
Q 003171 197 MVGDEASGVVWSGHR-----DGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGS----------E 260 (842)
Q Consensus 197 la~dpdg~~LaSGs~-----DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS----------~ 260 (842)
....|+++.++.... +++|.+.|..++ +.+.++..-..+ . |++||||+ |+.++ .
T Consensus 38 ~~~~pd~~~vyV~~~~~~~~~~~V~ViD~~t~--------~v~~~I~vG~~P-~-va~spDG~~lyVan~~~~r~~~G~~ 107 (386)
T 3sjl_D 38 EAPAPDARRVYVNDPAHFAAVTQQFVIDGEAG--------RVIGMIDGGFLP-N-PVVADDGSFIAHASTVFSRIARGER 107 (386)
T ss_dssp CCCCCCTTEEEEEECGGGCSSEEEEEEETTTT--------EEEEEEEECSSC-E-EEECTTSSCEEEEEEEEEETTEEEE
T ss_pred eccCCCCCEEEEEcCcccCCCCEEEEEECCCC--------eEEEEEECCCCC-c-EEECCCCCEEEEEcccccccccCCC
Confidence 345689999998876 679999999886 555555443445 3 99999998 66554 4
Q ss_pred CCcEEEEeCCCccceeecCCCceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcCCCCEEEEeC---CCcEEEE
Q 003171 261 GGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG---FLSFALW 337 (842)
Q Consensus 261 DgtIrvWd~~t~~~~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s---~~tI~lW 337 (842)
+++|.+||..+.+..-++..... ..... -..-..+++++++.++|.+. +++|.++
T Consensus 108 ~~~VsviD~~t~~v~~~I~v~~g---------------~r~~~-------g~~P~~~a~spDGk~lyVan~~~~~~VsVI 165 (386)
T 3sjl_D 108 TDYVEVFDPVTLLPTADIELPDA---------------PRFLV-------GTYPWMTSLTPDGKTLLFYQFSPAPAVGVV 165 (386)
T ss_dssp EEEEEEECTTTCCEEEEEEETTC---------------CCCCB-------SCCGGGEEECTTSSEEEEEECSSSCEEEEE
T ss_pred CCEEEEEECCCCeEEEEEECCCc---------------ccccc-------CCCCceEEEcCCCCEEEEEEcCCCCeEEEE
Confidence 68899999987542211100000 00000 00122366778888888764 3689999
Q ss_pred EccCCcEEEEeecCCceEeeeecccCCCcccccceEEEEEecCCCCccceeeeEeecCcceEEecCC-c-EEEEeecCcc
Q 003171 338 DARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAAD-A-VRRVAAKGGF 415 (842)
Q Consensus 338 D~~tg~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~-~-v~~v~~~g~~ 415 (842)
|+.+++.+.++...+... ..+.... + -+...+++..+++.... + +.... ...+
T Consensus 166 D~~t~~vv~tI~v~g~~~----~~P~g~~------~--------------~~~~~~DG~~~~v~~~~~g~v~~~~-~~~~ 220 (386)
T 3sjl_D 166 DLEGKAFKRMLDVPDCYH----IFPTAPD------T--------------FFMHCRDGSLAKVAFGTEGTPEITH-TEVF 220 (386)
T ss_dssp ETTTTEEEEEEECCSEEE----EEEEETT------E--------------EEEEETTSCEEEEECCSSSCCEEEE-CCCC
T ss_pred ECCCCcEEEEEECCCcce----eecCCCc------e--------------eEEECCCCCEEEEECCCCCeEEEee-ccee
Confidence 999999988875433210 0000000 0 00111122222222211 1 11000 0011
Q ss_pred ccCCCce-EEEEE-CCCCcEEEEeCCCeEEEEcCCCC---eeeeee------------cCCccEEEEEecCCEEEEEec-
Q 003171 416 GDDNRRT-EALTT-SIDGMIWTGGANGLLLQWDPNGN---RLQDFQ------------YLPFAVQCLCTFGSQIWVGYM- 477 (842)
Q Consensus 416 ~~~~~~v-~al~~-s~dg~l~Sgs~DgtIrlWD~~g~---~l~~l~------------~H~~~V~sls~dG~~LasGs~- 477 (842)
.-....+ ...++ .++|+++-.+.+|+|.+.|..+. .+..+. ........+.+++++|+....
T Consensus 221 ~~~~~~~~~~~~~~~~dG~~~~vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~ 300 (386)
T 3sjl_D 221 HPEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQ 300 (386)
T ss_dssp SCTTSCBCSCCEEETTTTEEEEEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEE
T ss_pred ccccccccccceeEcCCCcEEEEeCCCEEEEEECCCCcceeecceeccccccccccccCCCcceeeECCCCCeEEEEecc
Confidence 0011111 11233 57888655777899999999543 333332 112234456678888887653
Q ss_pred ---------CcEEEEEeCC-CcccccccccccCEEEEE--eCCC-EEEE-EcCCCCeeeccccCCCCC
Q 003171 478 ---------NGIVQVLDLE-GNLLGGWVAHSSPVIKMA--VGAG-YIFT-LANHGGIRGWNVTSPGPL 531 (842)
Q Consensus 478 ---------DgtIrlWD~~-g~~i~~l~gH~~~V~sla--~dg~-~l~S-~S~DgtIrvWd~~~~~~~ 531 (842)
..+|-+.|++ ++.++.+..- ..+++|+ +|++ .|++ ...+++|.++|..+...+
T Consensus 301 ~~~~~hk~~~~~V~viD~~t~kv~~~i~vg-~~~~~lavs~D~~~~ly~tn~~~~~VsViD~~t~k~~ 367 (386)
T 3sjl_D 301 RDEWRHKTASRFVVVLDAKTGERLAKFEMG-HEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEEL 367 (386)
T ss_dssp CCTTCTTSCEEEEEEEETTTCCEEEEEEEE-EEECEEEECSSSSCEEEEEETTTTEEEEEETTTCCEE
T ss_pred ccccccCCCCCEEEEEECCCCeEEEEEECC-CCcceEEECCCCCeEEEEEcCCCCeEEEEECCCCcEE
Confidence 3579999997 6666665432 2566666 5776 6665 456999999998765443
|
| >4gz1_A Tyrosyl-DNA phosphodiesterase 2; protein-DNA complex, DNA repair, 5'-DNA END processing, endonuclease/exonuclease/phosphatase domain; HET: DNA EPE; 1.50A {Mus musculus} PDB: 4gyz_A* 4gz0_A* 4gz2_A* | Back alignment and structure |
|---|
Probab=98.61 E-value=3e-07 Score=94.90 Aligned_cols=131 Identities=18% Similarity=0.220 Sum_probs=80.0
Q ss_pred eEEEEEEEeCCCCCCc-----ccccccccCCCCCceEEEEEeecccCccchhhhhhhhhhcccCCCcchhhHHHHHhhhc
Q 003171 553 KILAGTWNVGQGRASQ-----DALISWLGSAASDVGIVVVGLQEVEMGAGFLAMSAAKETVGLEGSAVGHWWLDMIGKIL 627 (842)
Q Consensus 553 ~i~~~twNv~~~~~~~-----~~l~~~l~~~~~~~di~viglQE~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~l~~~l 627 (842)
.+-+.|||+.+..... +.+.++|.. .+||| |+|||+... ..+.|.+.+
T Consensus 9 ~l~v~swNi~g~~~~~~~~r~~~i~~~i~~--~~pDI--i~LQEv~~~-----------------------~~~~l~~~~ 61 (256)
T 4gz1_A 9 TISFITWNIDGLDGCNLPERARGVCSCLAL--YSPDV--VFLQEVIPP-----------------------YCAYLKKRA 61 (256)
T ss_dssp EEEEEEEECCTTCCTTHHHHHHHHHHHHHH--HCCSE--EEEEEECHH-----------------------HHHHHHHHC
T ss_pred cEEEEEEEcCCCcCcCHHHHHHHHHHHHHH--cCCCE--EEEEcCCHH-----------------------HHHHHHhhc
Confidence 4789999998654321 346666663 45775 789997421 123444444
Q ss_pred cCCCceEEEeeeeceeeEEEEEEeccccCccCceeeceeecccCcccCCCCeeEEEEEEeCeEEEEEeecCcCCcchHHH
Q 003171 628 DDGSTFERVGSRQLAGLLIAVWVRKNLKDYVGDVDVAAVPCGFGRAIGNKGAVGLRVRVYDRIMCFVNCHFAAHLEAVNR 707 (842)
Q Consensus 628 ~~~~~y~~v~s~~l~g~~l~vf~r~~~~~~i~~v~~~~v~~G~~~~~gnKG~v~i~~~i~~~~~~Fv~~HLaa~~~~~~~ 707 (842)
. .|...... -.+-...++.++..... +.... ....+....++.+.+.+.+.+..+.++|+||.+.....+.
T Consensus 62 ~---~~~~~~~~-~~~~~~~~l~~~~~~~~---~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~v~~~Hl~~~~~~~~~ 132 (256)
T 4gz1_A 62 A---SYTIITGN-EEGYFTAILLKKGRVKF---KSQEI--IPFPNTKMMRNLLCVNVSLGGNEFCLMTSHLESTREHSAE 132 (256)
T ss_dssp T---TEEEEESC-SSSSEEEEEEETTTEEE---EEEEE--EECTTCSSCCEEEEEEEEETTEEEEEEECBCCCSGGGHHH
T ss_pred c---ccceeecc-ccCCceEEEEEeccccc---eeccc--ccCCcccccceEEEEEEEeCCEEEEEEeecccccccchhh
Confidence 2 22222111 11222345555543211 11111 1223334567889999999999999999999999888888
Q ss_pred HHHHHHHHHHhc
Q 003171 708 RNADFDHVYRTM 719 (842)
Q Consensus 708 Rn~~~~~I~~~l 719 (842)
|.+++..|++.+
T Consensus 133 ~~~q~~~~~~~l 144 (256)
T 4gz1_A 133 RIRQLKTVLGKM 144 (256)
T ss_dssp HHHHHHHHHHHH
T ss_pred hhHHHHHHhhhh
Confidence 989998888875
|
| >2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=98.60 E-value=2.4e-06 Score=93.22 Aligned_cols=261 Identities=8% Similarity=-0.051 Sum_probs=138.4
Q ss_pred CCeEEEEEcCCCCEEEEEe--CCCcEEEEECCCCccCCCCCcceeEE-------ecccCCcEEEEEEecCCCEEEeeC--
Q 003171 192 SSVMCMVGDEASGVVWSGH--RDGRIMCWKMNARLLDSDDGFGEVLS-------WQAHRGPVLSLCISSYGDLWSGSE-- 260 (842)
Q Consensus 192 ~~V~~la~dpdg~~LaSGs--~DGtIrlWdl~~g~~~~~~~~~~~~~-------l~gH~~~V~slafs~dG~L~SgS~-- 260 (842)
..+..++++++|+++++.. .++.++||.+.++ + ... ..+|-..+.+|+|+++|+||....
T Consensus 17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g--------~-~~~~p~~~~~~~~~~~~p~gv~~d~~g~L~v~D~g~ 87 (343)
T 2qe8_A 17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQD--------G-LIPFPPQSGNAIITFDTVLGIKSDGNGIVWMLDNGN 87 (343)
T ss_dssp SCEEEEEECTTSCEEEEECGGGCCSCSEEEEETT--------E-EEESCCCCSSCCCCCSCEEEEEECSSSEEEEEECHH
T ss_pred CCcceEEECCCCCEEEEeCCCCCCceEEEEECCC--------C-eecCCCcccCcccceeEeeEEEEcCCCcEEEEcCCC
Confidence 4688899999999998865 3454777877543 1 221 234667899999999999875442
Q ss_pred ----CCcEEEEeCCCccceeecCCCceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcCCCCEEEEe-----CC
Q 003171 261 ----GGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSA-----GF 331 (842)
Q Consensus 261 ----DgtIrvWd~~t~~~~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~-----s~ 331 (842)
+..|.+||+.+++....+..... ... +......+++++.+..++.+ ..
T Consensus 88 ~~~~~~~i~~~d~~tg~~~~~~~~~~~----------------~~~-------~~~~~~~v~vd~~~g~~yvtd~~~~~~ 144 (343)
T 2qe8_A 88 QSKSVPKLVAWDTLNNQLSRVIYLPPP----------------ITL-------SNSFVNDLAVDLIHNFVYISDPAPDDK 144 (343)
T ss_dssp HHTSCCEEEEEETTTTEEEEEEECCTT----------------TSC-------TTCCCCEEEEETTTTEEEEEECCSGGG
T ss_pred CcCCCCeEEEEECCCCeEEEEEECChh----------------hcc-------cccccceEEEecCCCEEEEEcCccCCC
Confidence 57899999876432111100000 000 01122345555444454433 23
Q ss_pred CcEEEEEccCCcEEEEeecCCceEeeeecccCCCcccccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEee
Q 003171 332 LSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAA 411 (842)
Q Consensus 332 ~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~ 411 (842)
.+|.+||+.+++..+++..+.... +.. . .+...+........++....+
T Consensus 145 ~~i~v~d~~~g~~~r~~~~~~~~~------~~~-~-----------------------~~~~~g~~~~~~~~~g~~~~~- 193 (343)
T 2qe8_A 145 AALIRVDLQTGLAARVLQGYPGIA------PED-I-----------------------DLVIDGVPVQIGQPDGTVIRP- 193 (343)
T ss_dssp CEEEEEETTTCCEEEECTTCTTTS------CCS-C-----------------------CCEETTEECBEECTTSCEECC-
T ss_pred CeEEEEECCCCCEEEEecCCCccc------ccc-c-----------------------ceeECCEEEEeccCCCceece-
Confidence 589999999998877664321110 000 0 000000000001111111000
Q ss_pred cCccccCCCceEEEEECCCCc-EEEEeCCCeEEEEcCC------CC-----eee--eeecCCccEEEEE--ecCCEEEEE
Q 003171 412 KGGFGDDNRRTEALTTSIDGM-IWTGGANGLLLQWDPN------GN-----RLQ--DFQYLPFAVQCLC--TFGSQIWVG 475 (842)
Q Consensus 412 ~g~~~~~~~~v~al~~s~dg~-l~Sgs~DgtIrlWD~~------g~-----~l~--~l~~H~~~V~sls--~dG~~LasG 475 (842)
...+..++++|||+ |+.+..++. ++|.+. +. ... ...++......++ .+|...++.
T Consensus 194 -------~~~~~gia~s~dg~~ly~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~pdgia~d~~G~l~va~ 265 (343)
T 2qe8_A 194 -------HLGVNGIVLDAENEWLYLSPMHST-SMYRIKSADLSNLQLTDAELGSKIERYSEKPICDGISIDKDHNIYVGD 265 (343)
T ss_dssp -------CCCEEEEEECTTSCEEEEEESSCS-EEEEEEHHHHTCTTCCHHHHHTTCEEEEECCSCSCEEECTTCCEEEEE
T ss_pred -------ecccceeEeccCCCEEEEEeCCCC-eEEEEEHHHhcCCCCChhhhhcceEecccCCCCceEEECCCCCEEEEc
Confidence 12346789999996 777776653 455431 11 111 1113333333344 467766666
Q ss_pred ecCcEEEEEeC-CCcccccccc-cccCEEEEEe--CCCEEEEEcCCCCeeec
Q 003171 476 YMNGIVQVLDL-EGNLLGGWVA-HSSPVIKMAV--GAGYIFTLANHGGIRGW 523 (842)
Q Consensus 476 s~DgtIrlWD~-~g~~i~~l~g-H~~~V~sla~--dg~~l~S~S~DgtIrvW 523 (842)
..++.|.+||. +|+....... +...+.++++ +++..++.+..+.+-+|
T Consensus 266 ~~~~~V~~~d~~~G~~~~~~~~~~~~~p~~va~~~~g~l~v~~~~~~~~~~f 317 (343)
T 2qe8_A 266 LAHSAIGVITSADRAYKLLVTDEKLSWTDSFNFGSDGYLYFDCNQLHHSAPL 317 (343)
T ss_dssp GGGTEEEEEETTTTEEEEEEECGGGSCEEEEEECTTSCEEEEECCGGGSGGG
T ss_pred cCCCeEEEEECCCCCEEEEEECCceecCCeeEECCCCcEEEEeCcccccccc
Confidence 67899999999 6764322221 2456788876 45555555544444333
|
| >1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A* | Back alignment and structure |
|---|
Probab=98.60 E-value=7.6e-06 Score=95.91 Aligned_cols=233 Identities=13% Similarity=0.054 Sum_probs=142.2
Q ss_pred EcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCCC-EEEeeCCCcEEEEeCC--Cccce
Q 003171 199 GDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWE--AIEKA 275 (842)
Q Consensus 199 ~dpdg~~LaSGs~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~~--t~~~~ 275 (842)
.|+++.++++...+++|.++|..++ +.+.++.. ...+..++|||||+ |++++.|+.|.+||+. +.+..
T Consensus 163 ~d~~~~~~V~~~~~~~V~viD~~t~--------~v~~~i~~-g~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v 233 (567)
T 1qks_A 163 WDLENLFSVTLRDAGQIALIDGSTY--------EIKTVLDT-GYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTV 233 (567)
T ss_dssp CCGGGEEEEEETTTTEEEEEETTTC--------CEEEEEEC-SSCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEE
T ss_pred cCCCceEEEEeCCCCeEEEEECCCC--------eEEEEEeC-CCCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEe
Confidence 4556677888888999999999986 44545543 23567999999998 7888999999999985 32211
Q ss_pred eecCCCceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEc----CCCCEEEEeC--CCcEEEEEccCCcEEEEee
Q 003171 276 LSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSD----HSRAKVWSAG--FLSFALWDARTRELLKVFN 349 (842)
Q Consensus 276 l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~----~~~~~v~s~s--~~tI~lWD~~tg~~l~~l~ 349 (842)
.++ .. ......++++ +++..++.+. ..++.++|..|.++++++.
T Consensus 234 ~~i-----------------------~~-------G~~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~ 283 (567)
T 1qks_A 234 AEI-----------------------KI-------GSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQS 283 (567)
T ss_dssp EEE-----------------------EC-------CSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEE
T ss_pred EEE-----------------------ec-------CCCCceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEe
Confidence 110 00 1123456777 4788888776 3689999999998877654
Q ss_pred cCCceEeeeecccCCCcccccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEeecCccccCCCceEEEEECC
Q 003171 350 IDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSI 429 (842)
Q Consensus 350 ~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~al~~s~ 429 (842)
..+.. . .. ..+ ....++.++..++
T Consensus 284 ~~~~~-------~---------------~~---------~~~-------------------------~p~~rva~i~~s~ 307 (567)
T 1qks_A 284 TRGMT-------Y---------------DE---------QEY-------------------------HPEPRVAAILASH 307 (567)
T ss_dssp CCEEC-------T---------------TT---------CCE-------------------------ESCCCEEEEEECS
T ss_pred ccccc-------c---------------cc---------ccc-------------------------cCCCceEEEEEcC
Confidence 21100 0 00 000 0011334455666
Q ss_pred CCc--EEEEeCCCeEEEEcCC-CCee--eeeecCCccEEE--EEecCCEEEEEe-cCcEEEEEeCC-Cccccccc-----
Q 003171 430 DGM--IWTGGANGLLLQWDPN-GNRL--QDFQYLPFAVQC--LCTFGSQIWVGY-MNGIVQVLDLE-GNLLGGWV----- 495 (842)
Q Consensus 430 dg~--l~Sgs~DgtIrlWD~~-g~~l--~~l~~H~~~V~s--ls~dG~~LasGs-~DgtIrlWD~~-g~~i~~l~----- 495 (842)
++. +++...+|.|.++|.. .+.+ ..+. ....... +.++|++++++. .+++|.++|++ ++++..+.
T Consensus 308 ~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i~-~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~~i~vgg~~ 386 (567)
T 1qks_A 308 YRPEFIVNVKETGKILLVDYTDLNNLKTTEIS-AERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQT 386 (567)
T ss_dssp SSSEEEEEETTTTEEEEEETTCSSEEEEEEEE-CCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSS
T ss_pred CCCEEEEEecCCCeEEEEecCCCccceeeeee-ccccccCceECCCCCEEEEEeCCCCeEEEEECCCCcEEEEEeccCcC
Confidence 654 3344466889999883 3322 2221 2223344 456899887766 57899999997 56544332
Q ss_pred cccc-CEEEEEeCCCEEEEEc--CCCCeeeccccC
Q 003171 496 AHSS-PVIKMAVGAGYIFTLA--NHGGIRGWNVTS 527 (842)
Q Consensus 496 gH~~-~V~sla~dg~~l~S~S--~DgtIrvWd~~~ 527 (842)
.|.+ .+.-+.+++..++..+ .+++|.+++..+
T Consensus 387 Phpg~g~~~~~p~~g~v~~t~~~g~~~Vsvid~~~ 421 (567)
T 1qks_A 387 PHPGRGANFVHPTFGPVWATSHMGDDSVALIGTDP 421 (567)
T ss_dssp BCCTTCEEEEETTTEEEEEEEBSSSSEEEEEECCT
T ss_pred CCCccceeeECCCCCcEEEeCCCCCCeEEEecCCC
Confidence 3543 2332345555554333 468999999754
|
| >3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B | Back alignment and structure |
|---|
Probab=98.57 E-value=2.5e-05 Score=83.09 Aligned_cols=216 Identities=11% Similarity=0.130 Sum_probs=125.2
Q ss_pred CCEEEE-e-cCCCEEEEeCCCCccccccccccccCCCCCCCCCCeeeeeecCCCeEEEEEcCCCCEEEEEeCCCcEEEEE
Q 003171 142 EEQLWA-G-GENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGHRDGRIMCWK 219 (842)
Q Consensus 142 ~~~l~~-~-~D~~vrvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~V~~la~dpdg~~LaSGs~DGtIrlWd 219 (842)
.+.||. . ..+.|..||.++.... .+ .. ...+.+++++++|+++ .+. ++.|.+||
T Consensus 24 ~~~l~~~d~~~~~i~~~d~~~~~~~------------------~~---~~-~~~~~~i~~~~dG~l~-v~~-~~~l~~~d 79 (297)
T 3g4e_A 24 SNSLLFVDIPAKKVCRWDSFTKQVQ------------------RV---TM-DAPVSSVALRQSGGYV-ATI-GTKFCALN 79 (297)
T ss_dssp TTEEEEEETTTTEEEEEETTTCCEE------------------EE---EC-SSCEEEEEEBTTSSEE-EEE-TTEEEEEE
T ss_pred CCEEEEEECCCCEEEEEECCCCcEE------------------EE---eC-CCceEEEEECCCCCEE-EEE-CCeEEEEE
Confidence 344444 3 3678999998653211 01 11 4578999999999954 455 56788999
Q ss_pred CCCCccCCCCCcceeEEec-c-cCCcEEEEEEecCCCEEEeeC----------CCcEEEEeCCCccceeecCCCceeeeE
Q 003171 220 MNARLLDSDDGFGEVLSWQ-A-HRGPVLSLCISSYGDLWSGSE----------GGGIKIWPWEAIEKALSLKPEERHTAA 287 (842)
Q Consensus 220 l~~g~~~~~~~~~~~~~l~-g-H~~~V~slafs~dG~L~SgS~----------DgtIrvWd~~t~~~~l~~~~~~~~~~~ 287 (842)
.+++. +..+.... + ....++.++++|+|+||.++. ....+||.++........ ..
T Consensus 80 ~~~g~------~~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~------~~- 146 (297)
T 3g4e_A 80 WKEQS------AVVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDHHVKKY------FD- 146 (297)
T ss_dssp TTTTE------EEEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCEEEE------EE-
T ss_pred CCCCc------EEEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCCCEEEE------ee-
Confidence 98752 11111111 1 134589999999999876542 134466655431110000 00
Q ss_pred EEEeeceeecccceeccceeeeecCCEEEEEEcCCCCEEEEe-C-CCcEEEEEc--cCCcEEEEeecCCceEeeeecccC
Q 003171 288 LIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSA-G-FLSFALWDA--RTRELLKVFNIDGQIENRVDMSLL 363 (842)
Q Consensus 288 l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~-s-~~tI~lWD~--~tg~~l~~l~~~~~~~~~~~~s~~ 363 (842)
. -.....++.++++..++.+ + .+.|.+||+ .+|.+... .
T Consensus 147 ------------~----------~~~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~-----~---------- 189 (297)
T 3g4e_A 147 ------------Q----------VDISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQISNR-----R---------- 189 (297)
T ss_dssp ------------E----------ESBEEEEEECTTSCEEEEEEGGGTEEEEEEECTTTCCEEEE-----E----------
T ss_pred ------------c----------cccccceEEcCCCCEEEEecCCCCcEEEEeccCCCCcccCc-----E----------
Confidence 0 0112346667777655433 3 356778876 45543100 0
Q ss_pred CCcccccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEeecCccccCCCceEEEEECCCCcEEEEe-CCCeE
Q 003171 364 PDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGMIWTGG-ANGLL 442 (842)
Q Consensus 364 ~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~al~~s~dg~l~Sgs-~DgtI 442 (842)
.+.. +.........++++++|.||.+. .++.|
T Consensus 190 ------------~~~~-----------------------------------~~~~~~~p~g~~~d~~G~lwva~~~~~~v 222 (297)
T 3g4e_A 190 ------------SVYK-----------------------------------LEKEEQIPDGMCIDAEGKLWVACYNGGRV 222 (297)
T ss_dssp ------------EEEE-----------------------------------CCGGGCEEEEEEEBTTSCEEEEEETTTEE
T ss_pred ------------EEEE-----------------------------------CCCCCCCCCeeEECCCCCEEEEEcCCCEE
Confidence 0000 00011223457788999988776 45679
Q ss_pred EEEcC-CCCeeeeeecCCccEEEEEe---cCCEEEEEecC
Q 003171 443 LQWDP-NGNRLQDFQYLPFAVQCLCT---FGSQIWVGYMN 478 (842)
Q Consensus 443 rlWD~-~g~~l~~l~~H~~~V~sls~---dG~~LasGs~D 478 (842)
.+||. +|+.+..+..+...++++++ +++.|++++..
T Consensus 223 ~~~d~~tG~~~~~i~~p~~~~t~~~f~g~d~~~L~vt~~~ 262 (297)
T 3g4e_A 223 IRLDPVTGKRLQTVKLPVDKTTSCCFGGKNYSEMYVTCAR 262 (297)
T ss_dssp EEECTTTCCEEEEEECSSSBEEEEEEESGGGCEEEEEEBC
T ss_pred EEEcCCCceEEEEEECCCCCceEEEEeCCCCCEEEEEcCC
Confidence 99999 59999999888778888876 45677776653
|
| >3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A* | Back alignment and structure |
|---|
Probab=98.57 E-value=2.8e-06 Score=102.13 Aligned_cols=88 Identities=15% Similarity=0.097 Sum_probs=57.7
Q ss_pred CeEEEEcC-CCCe--eeeeecCCccEEEEEecCCEEEEEecCc---EEEEEeCCCcccccccc-cccCEEEEE--eCCCE
Q 003171 440 GLLLQWDP-NGNR--LQDFQYLPFAVQCLCTFGSQIWVGYMNG---IVQVLDLEGNLLGGWVA-HSSPVIKMA--VGAGY 510 (842)
Q Consensus 440 gtIrlWD~-~g~~--l~~l~~H~~~V~sls~dG~~LasGs~Dg---tIrlWD~~g~~i~~l~g-H~~~V~sla--~dg~~ 510 (842)
+.|..||+ ++.+ .+++..|...+.+++++|++|+....++ .|++||++|+..+.+.. +.+.|..+. ++++.
T Consensus 305 ~~l~~~d~~~~~~~~~~~l~~~~~~~~~~s~~g~~lv~~~~~~g~~~l~~~d~~g~~~~~l~~p~~~~~~~~~~~~d~~~ 384 (693)
T 3iuj_A 305 RRLVTVDAANPGPAHWRDLIPERQQVLTVHSGSGYLFAEYMVDATARVEQFDYEGKRVREVALPGLGSVSGFNGKHDDPA 384 (693)
T ss_dssp CEEEEEETTSCCGGGCEEEECCCSSCEEEEEETTEEEEEEEETTEEEEEEECTTSCEEEEECCSSSSEEEECCCCTTCSC
T ss_pred CEEEEEeCCCCCccccEEEecCCCCEEEEEEECCEEEEEEEECCeeEEEEEECCCCeeEEeecCCCceEEeeecCCCCCE
Confidence 57888998 4443 4667777666558888999888776543 79999998765554432 334555555 35665
Q ss_pred EEEEcCC----CCeeeccccC
Q 003171 511 IFTLANH----GGIRGWNVTS 527 (842)
Q Consensus 511 l~S~S~D----gtIrvWd~~~ 527 (842)
++-...+ ++|..||+.+
T Consensus 385 l~~~~ss~~tP~~l~~~d~~~ 405 (693)
T 3iuj_A 385 LYFGFENYAQPPTLYRFEPKS 405 (693)
T ss_dssp EEEEEECSSSCCEEEEECTTT
T ss_pred EEEEecCCCCCCEEEEEECCC
Confidence 5433323 6788888754
|
| >4fva_A 5'-tyrosyl-DNA phosphodiesterase; 5'-phosphotyrosyl-DNA diesterase, hydrolase; HET: EDO; 2.07A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.57 E-value=2.3e-07 Score=95.93 Aligned_cols=132 Identities=17% Similarity=0.154 Sum_probs=80.7
Q ss_pred eeEEEEEEEeCCCCCCc-----ccccccccCCCCCceEEEEEeecccCccchhhhhhhhhhcccCCCcchhhHHHHHhhh
Q 003171 552 LKILAGTWNVGQGRASQ-----DALISWLGSAASDVGIVVVGLQEVEMGAGFLAMSAAKETVGLEGSAVGHWWLDMIGKI 626 (842)
Q Consensus 552 ~~i~~~twNv~~~~~~~-----~~l~~~l~~~~~~~di~viglQE~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~l~~~ 626 (842)
.+|-+.|||+.+..... +.+.++|.. .+|| ||+|||+.... .+.+.+.
T Consensus 12 ~~l~v~s~Ni~g~~~~~~~~r~~~i~~~i~~--~~pD--Ii~LQEv~~~~-----------------------~~~l~~~ 64 (256)
T 4fva_A 12 FEVSVMSWNIDGLDGRSLLTRMKAVAHIVKN--VNPD--ILFLQEVVDRD-----------------------LAPIDKL 64 (256)
T ss_dssp CEEEEEEEECCTTCCTTHHHHHHHHHHHHHH--HCCS--EEEEEEECSTT-----------------------CHHHHGG
T ss_pred CEEEEEEEecCCCCCcCHHHHHHHHHHHHHH--cCCC--EEEEEecChhH-----------------------hHHHHHh
Confidence 46899999997643321 236666664 4577 46899985321 1123333
Q ss_pred ccCCCceEEEeeeeceeeEEEEEEeccccCccCceeeceeecccCcccCCCCeeEEEEEEeCeEEEEEeecCcCCcchHH
Q 003171 627 LDDGSTFERVGSRQLAGLLIAVWVRKNLKDYVGDVDVAAVPCGFGRAIGNKGAVGLRVRVYDRIMCFVNCHFAAHLEAVN 706 (842)
Q Consensus 627 l~~~~~y~~v~s~~l~g~~l~vf~r~~~~~~i~~v~~~~v~~G~~~~~gnKG~v~i~~~i~~~~~~Fv~~HLaa~~~~~~ 706 (842)
+. .|.......-.+-...++.++.+. .++.... .+......++.+.+.+.+.+..+.++|+||.+....-.
T Consensus 65 ~~---~~~~~~~~~~~~~g~~il~~~~~~----~~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~~v~~~Hl~~~~~~~~ 135 (256)
T 4fva_A 65 QS---LYKIYYSNKGCQYYTAILVSKMFD----VEKHDVI--HFQNSGMYRTLQILEGSIGGLKVFLLNTHLESTREHRP 135 (256)
T ss_dssp GG---TEEEEESSTTSSSEEEEEEETTCE----EEEEEEE--ECTTCSSCCEEEEEEEEETTEEEEEEEEECCCSGGGHH
T ss_pred cC---CceEeecCCCCCcceEEEEeeccc----ceecccc--cCCCCcccceeEEEEEEeCCeEEEEEEecCCCCCcchH
Confidence 31 222233333333445667776542 2222222 22233346788899999999999999999999887777
Q ss_pred HHHHHHHHHHHhc
Q 003171 707 RRNADFDHVYRTM 719 (842)
Q Consensus 707 ~Rn~~~~~I~~~l 719 (842)
+|.++++.+...+
T Consensus 136 ~~~~q~~~~~~~~ 148 (256)
T 4fva_A 136 QRCAQFGFCMDKV 148 (256)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 8888887776643
|
| >3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A | Back alignment and structure |
|---|
Probab=98.54 E-value=7e-06 Score=90.24 Aligned_cols=257 Identities=16% Similarity=0.116 Sum_probs=145.9
Q ss_pred CCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEeccc---------CCcEEEEEEecCCCEEEeeCCCcEEEEeCCCcc
Q 003171 203 SGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAH---------RGPVLSLCISSYGDLWSGSEGGGIKIWPWEAIE 273 (842)
Q Consensus 203 g~~LaSGs~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH---------~~~V~slafs~dG~L~SgS~DgtIrvWd~~t~~ 273 (842)
++.|+.++.++.|..+|..+| +.+-+.... ...+.+.....++.++.++.|+.|..+|..+++
T Consensus 53 ~~~v~~~~~~g~v~a~d~~tG--------~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~g~l~a~d~~tG~ 124 (376)
T 3q7m_A 53 DNVVYAADRAGLVKALNADDG--------KEIWSVSLAEKDGWFSKEPALLSGGVTVSGGHVYIGSEKAQVYALNTSDGT 124 (376)
T ss_dssp TTEEEEECTTSEEEEEETTTC--------CEEEEEECCC---CCSCCCCCEEEEEEEETTEEEEEETTSEEEEEETTTCC
T ss_pred CCEEEEEcCCCeEEEEEccCC--------ceeeeecCccccccccccCcccccCceEeCCEEEEEcCCCEEEEEECCCCC
Confidence 578899999999999999887 333222221 233444434456779999999999999998876
Q ss_pred ceeecCCCceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcCCCCEEEEeC-CCcEEEEEccCCcEEEEeecCC
Q 003171 274 KALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVFNIDG 352 (842)
Q Consensus 274 ~~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s-~~tI~lWD~~tg~~l~~l~~~~ 352 (842)
...+...... .. ... +.. +..|+.++ ++.|..+|++||+.+-.+....
T Consensus 125 ~~W~~~~~~~----------------------~~---~~p---~~~---~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~ 173 (376)
T 3q7m_A 125 VAWQTKVAGE----------------------AL---SRP---VVS---DGLVLIHTSNGQLQALNEADGAVKWTVNLDM 173 (376)
T ss_dssp EEEEEECSSC----------------------CC---SCC---EEE---TTEEEEECTTSEEEEEETTTCCEEEEEECCC
T ss_pred EEEEEeCCCc----------------------eE---cCC---EEE---CCEEEEEcCCCeEEEEECCCCcEEEEEeCCC
Confidence 5433221100 00 001 111 33566655 5679999999999876654432
Q ss_pred ceEeeeecccCCCcccccceEEEEEecCCCCccceeeeEeecCcceEEecCCc-EEEEee-cCccc------cCC-----
Q 003171 353 QIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADA-VRRVAA-KGGFG------DDN----- 419 (842)
Q Consensus 353 ~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~-v~~v~~-~g~~~------~~~----- 419 (842)
... .........+. ...++++..++ +..+.. .|... ...
T Consensus 174 ~~~---~~~~~~~~~~~-------------------------~~~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~ 225 (376)
T 3q7m_A 174 PSL---SLRGESAPTTA-------------------------FGAAVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTEI 225 (376)
T ss_dssp --------CCCCCCEEE-------------------------TTEEEECCTTTEEEEEETTTCCEEEEEECCC-------
T ss_pred Cce---eecCCCCcEEE-------------------------CCEEEEEcCCCEEEEEECCCCcEEEEEecccCCCCccc
Confidence 210 00000000000 01122222222 222221 11100 000
Q ss_pred Cc---eEEEEECCCCcEEEEeCCCeEEEEcC-CCCeeeeeecCCccEEEEEecCCEEEEEecCcEEEEEeCC-Ccccccc
Q 003171 420 RR---TEALTTSIDGMIWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQCLCTFGSQIWVGYMNGIVQVLDLE-GNLLGGW 494 (842)
Q Consensus 420 ~~---v~al~~s~dg~l~Sgs~DgtIrlWD~-~g~~l~~l~~H~~~V~sls~dG~~LasGs~DgtIrlWD~~-g~~i~~l 494 (842)
.. +.....-.++.++.++.++.|..+|. +|+.+-... .....++..++..|+.++.++.|..+|.+ |+.+-..
T Consensus 226 ~~~~~~~~~p~~~~~~v~~~~~~g~l~~~d~~tG~~~w~~~--~~~~~~~~~~~~~l~~~~~~g~l~~~d~~tG~~~w~~ 303 (376)
T 3q7m_A 226 DRLSDVDTTPVVVNGVVFALAYNGNLTALDLRSGQIMWKRE--LGSVNDFIVDGNRIYLVDQNDRVMALTIDGGVTLWTQ 303 (376)
T ss_dssp ----CCCCCCEEETTEEEEECTTSCEEEEETTTCCEEEEEC--CCCEEEEEEETTEEEEEETTCCEEEEETTTCCEEEEE
T ss_pred ccccccCCCcEEECCEEEEEecCcEEEEEECCCCcEEeecc--CCCCCCceEECCEEEEEcCCCeEEEEECCCCcEEEee
Confidence 00 00000112678899998999999999 788765543 23455677788999999999999999986 6654333
Q ss_pred c-ccccCEEEEEeCCCEEEEEcCCCCeeeccccCC
Q 003171 495 V-AHSSPVIKMAVGAGYIFTLANHGGIRGWNVTSP 528 (842)
Q Consensus 495 ~-gH~~~V~sla~dg~~l~S~S~DgtIrvWd~~~~ 528 (842)
. .....+.+....+..++.++.++.|..+|..+.
T Consensus 304 ~~~~~~~~~~~~~~~~~l~v~~~~g~l~~~d~~tG 338 (376)
T 3q7m_A 304 SDLLHRLLTSPVLYNGNLVVGDSEGYLHWINVEDG 338 (376)
T ss_dssp CTTTTSCCCCCEEETTEEEEECTTSEEEEEETTTC
T ss_pred cccCCCcccCCEEECCEEEEEeCCCeEEEEECCCC
Confidence 2 122233334445678888999999999997653
|
| >1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C* | Back alignment and structure |
|---|
Probab=98.54 E-value=1.5e-06 Score=96.85 Aligned_cols=175 Identities=7% Similarity=0.034 Sum_probs=109.6
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCcc---CCCCCcceeEEecccCCcEEEEEEecCCC-EEEeeCCCcEEEE
Q 003171 192 SSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLL---DSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIW 267 (842)
Q Consensus 192 ~~V~~la~dpdg~~LaSGs~DGtIrlWdl~~g~~---~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvW 267 (842)
.++..|++++..+++++|+.|+. ++|++....- +....++.. ....+.+ |+.|+| |+. |+.+ .+++|++|
T Consensus 38 ~~~nlLais~~~gll~a~~~~~l-~v~~~~~l~~~~~~~~~~~~~~-~~~~lp~-V~~l~f--d~~~L~v~-~~~~l~v~ 111 (388)
T 1xip_A 38 ASLQNLDISNSKSLFVAASGSKA-VVGELQLLRDHITSDSTPLTFK-WEKEIPD-VIFVCF--HGDQVLVS-TRNALYSL 111 (388)
T ss_dssp SCCBCEEEETTTTEEEEEETTEE-EEEEHHHHHHHHHSSSCCCCCS-EEEECTT-EEEEEE--ETTEEEEE-ESSEEEEE
T ss_pred ccccEEEEcCCCCEEEEeCCCEE-EEEEhhHhhhhhccccccccce-EEeeCCC-eeEEEE--CCCEEEEE-cCCcEEEE
Confidence 36889999999999999999865 4698654210 000012221 2335667 999999 776 6677 88999999
Q ss_pred eCCCccceeecCCCceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcCCCCEEEEeCCCcEEEEEccCCcEEEE
Q 003171 268 PWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGFLSFALWDARTRELLKV 347 (842)
Q Consensus 268 d~~t~~~~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s~~tI~lWD~~tg~~l~~ 347 (842)
|+.+....-..... ...+..+...+.. .+...+++++.+||+.++....
T Consensus 112 dv~sl~~~~~~~~~-----------------------------~~~v~~i~~~~p~-~av~~~dG~L~v~dl~~~~~~~- 160 (388)
T 1xip_A 112 DLEELSEFRTVTSF-----------------------------EKPVFQLKNVNNT-LVILNSVNDLSALDLRTKSTKQ- 160 (388)
T ss_dssp ESSSTTCEEEEEEC-----------------------------SSCEEEEEECSSE-EEEEETTSEEEEEETTTCCEEE-
T ss_pred EchhhhccCcccee-----------------------------ecceeeEEecCCC-EEEEECCCCEEEEEccCCcccc-
Confidence 99764321111000 0011122222211 3333456899999998766421
Q ss_pred eecCCceEeeeecccCCCcccccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEeecCccccCCCceEEEEE
Q 003171 348 FNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTT 427 (842)
Q Consensus 348 l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~al~~ 427 (842)
+ ...|.++++
T Consensus 161 ~----------------------------------------------------------------------~~~Vs~v~W 170 (388)
T 1xip_A 161 L----------------------------------------------------------------------AQNVTSFDV 170 (388)
T ss_dssp E----------------------------------------------------------------------EESEEEEEE
T ss_pred c----------------------------------------------------------------------cCCceEEEE
Confidence 0 012557889
Q ss_pred CCCCcEEEEeCCCeEEEEcCCCCe---eeee------e---cCCccEEEEEec--CCEEEE
Q 003171 428 SIDGMIWTGGANGLLLQWDPNGNR---LQDF------Q---YLPFAVQCLCTF--GSQIWV 474 (842)
Q Consensus 428 s~dg~l~Sgs~DgtIrlWD~~g~~---l~~l------~---~H~~~V~sls~d--G~~Las 474 (842)
||+| ++.|..||+|++|+..+.. .+++ . +|...|.+|... +.++++
T Consensus 171 SpkG-~~vg~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~ 230 (388)
T 1xip_A 171 TNSQ-LAVLLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAV 230 (388)
T ss_dssp CSSE-EEEEETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEE
T ss_pred cCCc-eEEEEcCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEE
Confidence 9999 7889999999999995543 5556 2 478889999764 445543
|
| >4f1h_A Tyrosyl-DNA phosphodiesterase 2; hydrolase-DNA complex; HET: DNA; 1.66A {Danio rerio} PDB: 4fpv_A* 4f1h_B* | Back alignment and structure |
|---|
Probab=98.51 E-value=3.5e-07 Score=93.22 Aligned_cols=45 Identities=9% Similarity=0.155 Sum_probs=38.9
Q ss_pred CCCCeeEEEEEEeCeEEEEEeecCcCCcchHHHHHHHHHHHHHhc
Q 003171 675 GNKGAVGLRVRVYDRIMCFVNCHFAAHLEAVNRRNADFDHVYRTM 719 (842)
Q Consensus 675 gnKG~v~i~~~i~~~~~~Fv~~HLaa~~~~~~~Rn~~~~~I~~~l 719 (842)
.....+.+.+.+.+..+.++|+||.+.....+.|.++++.|++.+
T Consensus 94 ~~~~~~~~~~~~~~~~~~v~~~hl~~~~~~~~~r~~q~~~~~~~l 138 (250)
T 4f1h_A 94 MMRNLLIAQVTFSGQKLYLMTSHLESCKNQSQERTKQLRVVLQKI 138 (250)
T ss_dssp SCCEEEEEEEEETTEEEEEEECBCCCSGGGHHHHHHHHHHHHHHH
T ss_pred ccceEEEEEEecCCcEEEEeccccccccccHHHHHHHHHHHHHHH
Confidence 346678888889999999999999998888888999999998875
|
| >2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.49 E-value=5.3e-08 Score=108.01 Aligned_cols=190 Identities=14% Similarity=0.109 Sum_probs=101.2
Q ss_pred CCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCCC-EEEeeCCCcEEEEeCCCccceeecCC
Q 003171 202 ASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEKALSLKP 280 (842)
Q Consensus 202 dg~~LaSGs~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~~t~~~~l~~~~ 280 (842)
++++|++|+.||.|+.||..+| +.+-++.. +++.+..+..+|. +++++.|+.|+.||..+++...+...
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG--------~~~W~~~~--~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~ 77 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTG--------SIKWTLKE--DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPF 77 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTC--------CEEEEEEC--CCSCCCC-----CCEEECTTTCCEEEC-----CCSEECSC
T ss_pred eCCEEEEEcCCCEEEEEECCCC--------CEEEEecC--CCceecceEcCCCEEEEeCCCCEEEEEECCCCceeeeeec
Confidence 5789999999999999999998 55555554 5565666667776 66788999999999977654333221
Q ss_pred CceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcCCCCEEEEeC-CCcEEEEEccCCcEEEEeecCCceEeeee
Q 003171 281 EERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVFNIDGQIENRVD 359 (842)
Q Consensus 281 ~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s-~~tI~lWD~~tg~~l~~l~~~~~~~~~~~ 359 (842)
.... .... +.-+ . .+.+|+.++ ++++..||++||+.+..+..+..
T Consensus 78 ~~~~-----------------~~~~-----sp~~-----~-~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~~------ 123 (369)
T 2hz6_A 78 TIPE-----------------LVQA-----SPCR-----S-SDGILYMGKKQDIWYVIDLLTGEKQQTLSSAFA------ 123 (369)
T ss_dssp CHHH-----------------HHTT-----CSCC-----------CCCCEEEEEEEEECCC-------------------
T ss_pred cCcc-----------------cccc-----CceE-----e-cCCEEEEEeCCCEEEEEECCCCcEEEEecCCCc------
Confidence 1000 0000 0000 0 122344433 46799999999987543321100
Q ss_pred cccCCCcccccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEeecCccccCCCceEEEEEC-CCCcEEEEeC
Q 003171 360 MSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTS-IDGMIWTGGA 438 (842)
Q Consensus 360 ~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~al~~s-~dg~l~Sgs~ 438 (842)
..++ .++.+++++.
T Consensus 124 -----------------------------------------------------------------~~~~p~~~~v~~~~~ 138 (369)
T 2hz6_A 124 -----------------------------------------------------------------DSLSPSTSLLYLGRT 138 (369)
T ss_dssp --------------------------------------------------------------------------EEEEEE
T ss_pred -----------------------------------------------------------------ccccccCCEEEEEec
Confidence 0011 2345888888
Q ss_pred CCeEEEEcC-CCCeeeeeecCCccEEEEEecC-----CEEEEEecCcEEEEEeCC-CcccccccccccCEEE
Q 003171 439 NGLLLQWDP-NGNRLQDFQYLPFAVQCLCTFG-----SQIWVGYMNGIVQVLDLE-GNLLGGWVAHSSPVIK 503 (842)
Q Consensus 439 DgtIrlWD~-~g~~l~~l~~H~~~V~sls~dG-----~~LasGs~DgtIrlWD~~-g~~i~~l~gH~~~V~s 503 (842)
|+.|+.||. +|+.+-.+..+. ..+...++ ..+++++.||.|..||.+ |+.+-... ..++|.+
T Consensus 139 dg~v~a~d~~tG~~~W~~~~~~--~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~~~-~~~pv~~ 207 (369)
T 2hz6_A 139 EYTITMYDTKTRELRWNATYFD--YAASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVLWIQN-YASPVVA 207 (369)
T ss_dssp EEEEECCCSSSSSCCCEEEEEE--ECCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCEEEEEE-CSSCEEE
T ss_pred CCEEEEEECCCCCEEEeEeccc--ccCccccCCccccceEEEECCCCEEEEEECCCCcEEEEec-CCCceEE
Confidence 999999999 788766654322 11222233 578888999999999986 77644443 2344544
|
| >2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H* | Back alignment and structure |
|---|
Probab=98.48 E-value=8.5e-05 Score=82.30 Aligned_cols=275 Identities=8% Similarity=-0.078 Sum_probs=145.5
Q ss_pred EEcCCCCEEEEEeC--CC---cEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCCC-EEEee----------CC
Q 003171 198 VGDEASGVVWSGHR--DG---RIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGS----------EG 261 (842)
Q Consensus 198 a~dpdg~~LaSGs~--DG---tIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS----------~D 261 (842)
...|+++.++.... .. +|.++|..++ +.+.++..-..+ .++|||||+ |+.+. .+
T Consensus 27 ~~~~~~~~~yv~~~~~~~~~~~v~v~D~~t~--------~~~~~i~~g~~p--~i~~spDg~~lyv~n~~~~~~~rg~~~ 96 (373)
T 2mad_H 27 APGADGRRSYINLPAHHSAIIQQWVLDAGSG--------SILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGKRT 96 (373)
T ss_pred cCCCCCCEEEEeCCcccCCccEEEEEECCCC--------eEEEEecCCCCC--CeEECCCCCEEEEEeccccccccCCCC
Confidence 34577888887754 22 8899999886 455555443445 899999998 66543 47
Q ss_pred CcEEEEeCCCccceeecCCC-ceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcCCCCEEEEeC---CCcEEEE
Q 003171 262 GGIKIWPWEAIEKALSLKPE-ERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG---FLSFALW 337 (842)
Q Consensus 262 gtIrvWd~~t~~~~l~~~~~-~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s---~~tI~lW 337 (842)
++|.+||..+.+..-..... ... ... ...-..++.++++..++.+. ..+|.++
T Consensus 97 ~~v~viD~~t~~~~~~i~~~~~~~-----------------~~~------g~~p~~~~~spDG~~l~v~n~~~~~~v~vi 153 (373)
T 2mad_H 97 DYVEVFDPVTFLPIADIELPDAPR-----------------FDV------GPYSWMNANTPNNADLLFFQFAAGPAVGLV 153 (373)
T ss_pred CeEEEEECCCCcEEEEEECCCccc-----------------ccc------CCCccceEECCCCCEEEEEecCCCCeEEEE
Confidence 88999999764322111000 000 000 01123567778888888764 2579999
Q ss_pred EccCCcEEEE-eecCCceEeeeecccCCCcccccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEE-EEeecCcc
Q 003171 338 DARTRELLKV-FNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVR-RVAAKGGF 415 (842)
Q Consensus 338 D~~tg~~l~~-l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~-~v~~~g~~ 415 (842)
| .+++.+.. +...+.. .+.+..... -+.+++++...++.....+. .......+
T Consensus 154 D-~t~~~~~~~i~~~~~~----~~~~~~~~~--------------------~~~~~~dg~~~~vd~~g~~~~~~~~~~~~ 208 (373)
T 2mad_H 154 V-QGGSSDDQLLSSPTCY----HIHPGAPST--------------------FYLLCAQGGLAKTDHAGGAAGAGLVGAML 208 (373)
T ss_pred E-CCCCEEeEEcCCCceE----EEEeCCCce--------------------EEEEcCCCCEEEEECCCcEEEEEeccccc
Confidence 9 99998777 5432211 110000000 00111111111111100111 00000001
Q ss_pred ccCCCceEEEEECCC-CcEEEEeCCCeEEEEcCCCC---eeeeeecC----------Cc--cEEEEEecCCEEEEEec--
Q 003171 416 GDDNRRTEALTTSID-GMIWTGGANGLLLQWDPNGN---RLQDFQYL----------PF--AVQCLCTFGSQIWVGYM-- 477 (842)
Q Consensus 416 ~~~~~~v~al~~s~d-g~l~Sgs~DgtIrlWD~~g~---~l~~l~~H----------~~--~V~sls~dG~~LasGs~-- 477 (842)
.+.........++++ +.++..+..+.|.+.|+.+. .+..+... .. ....+.++|++|+++..
T Consensus 209 ~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~ 288 (373)
T 2mad_H 209 TAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQ 288 (373)
T ss_pred cCCcceeecceeEecCCEEEEEcCCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCCCCEEEEEeccC
Confidence 111001112233343 34444446778888888432 22333211 11 12345678888888653
Q ss_pred --------CcEEEEEeCC-CcccccccccccCEEEEE--eCCC-EEEEEc-CCCCeeeccccCCCCC
Q 003171 478 --------NGIVQVLDLE-GNLLGGWVAHSSPVIKMA--VGAG-YIFTLA-NHGGIRGWNVTSPGPL 531 (842)
Q Consensus 478 --------DgtIrlWD~~-g~~i~~l~gH~~~V~sla--~dg~-~l~S~S-~DgtIrvWd~~~~~~~ 531 (842)
++.|.+.|++ ++.++++..- ...++++ +||+ .++++. .+++|.++|+.+...+
T Consensus 289 ~~~~~~~~~~~V~VID~~t~~vv~~i~~g-~~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t~~vv 354 (373)
T 2mad_H 289 SAWKLHAAAKEVTSVTGLVGQTSSQISLG-HDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQD 354 (373)
T ss_pred CcccccCCCCeEEEEECCCCEEEEEEECC-CCcCeEEECCCCCeEEEEEcCCCCeEEEEECCCCCEE
Confidence 3589999997 5666666432 2355655 6888 677777 5899999998765443
|
| >1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum} | Back alignment and structure |
|---|
Probab=98.47 E-value=8.5e-06 Score=98.56 Aligned_cols=71 Identities=6% Similarity=-0.088 Sum_probs=50.5
Q ss_pred EEEEEcCCCCEEEEEeCCCc--------------EEEEECCCCccCCCCCcceeEEe--cccCCcEEEEEEecCCC-EEE
Q 003171 195 MCMVGDEASGVVWSGHRDGR--------------IMCWKMNARLLDSDDGFGEVLSW--QAHRGPVLSLCISSYGD-LWS 257 (842)
Q Consensus 195 ~~la~dpdg~~LaSGs~DGt--------------IrlWdl~~g~~~~~~~~~~~~~l--~gH~~~V~slafs~dG~-L~S 257 (842)
..++|+|| +.|+.++.|+. |++|++.++. ......+ ..|...+.++.|||||+ |+.
T Consensus 212 ~~~~wspD-~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~------~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~ 284 (741)
T 1yr2_A 212 SGLAWLGN-DALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQ------SADQPVFATPELPKRGHGASVSSDGRWVVI 284 (741)
T ss_dssp CCCEESTT-SEEEEEECCCC--------CCCCCEEEEEETTSCG------GGCEEEECCTTCTTCEEEEEECTTSCEEEE
T ss_pred ccEEEECC-CEEEEEEecCcccccccccCCCCCEEEEEECCCCc------hhCEEEeccCCCCeEEEEEEECCCCCEEEE
Confidence 46889999 99999888765 8899997752 0112333 34445689999999998 655
Q ss_pred eeCC-----CcEEEEeCCCc
Q 003171 258 GSEG-----GGIKIWPWEAI 272 (842)
Q Consensus 258 gS~D-----gtIrvWd~~t~ 272 (842)
.+.+ ..|.+||++++
T Consensus 285 ~~~~~~~~~~~l~~~d~~~~ 304 (741)
T 1yr2_A 285 TSSEGTDPVNTVHVARVTNG 304 (741)
T ss_dssp EEECTTCSCCEEEEEEEETT
T ss_pred EEEccCCCcceEEEEECCCC
Confidence 4433 48999998654
|
| >3teb_A Endonuclease/exonuclease/phosphatase; PSI-biology, MCSG, midwest center for structural genomics; 2.99A {Leptotrichia buccalis c-1013-b} | Back alignment and structure |
|---|
Probab=98.46 E-value=7.6e-07 Score=93.01 Aligned_cols=149 Identities=14% Similarity=0.089 Sum_probs=80.9
Q ss_pred EEEEEEEeCCCCCCc-----ccccccccCCCCCceEEEEEeecccCccchhhhhhhhhhcccCCCcchhhHHHHHhhhcc
Q 003171 554 ILAGTWNVGQGRASQ-----DALISWLGSAASDVGIVVVGLQEVEMGAGFLAMSAAKETVGLEGSAVGHWWLDMIGKILD 628 (842)
Q Consensus 554 i~~~twNv~~~~~~~-----~~l~~~l~~~~~~~di~viglQE~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~l~~~l~ 628 (842)
+.+.|||+.+..... +.+.++|.. .+||| |+|||+...... +.+ .+......|...+.+.|.
T Consensus 4 l~v~t~Ni~~~~~~~~~~~~~~i~~~i~~--~~~DI--i~LQEv~~~~~~-------~~~--~~~~~~d~~~~~~~~~l~ 70 (266)
T 3teb_A 4 MKILTVNVHAWLEENQMEKIDILARTIAE--KQYDV--IAMQEVNQLMNN-------KII--FDDIREENYAWVLLETLQ 70 (266)
T ss_dssp EEEEEEECCTTCSTTHHHHHHHHHHHHHH--HTCSE--EEEEEEEEETTS-------CEE--ETTEETTCHHHHHHHHHT
T ss_pred eEEEEEecccccCcchhHHHHHHHHHHHh--cCCCE--EEEEEccccccc-------ccc--ccccccccHHHHHHHHHH
Confidence 778999996553321 234445543 45675 679999632100 000 000011123333333332
Q ss_pred C--CCceEEEee-----eeceeeEEEEEEeccccCccCceeeceee-cccCcccCCCCeeEEEEEEeCeEEEEEeecCcC
Q 003171 629 D--GSTFERVGS-----RQLAGLLIAVWVRKNLKDYVGDVDVAAVP-CGFGRAIGNKGAVGLRVRVYDRIMCFVNCHFAA 700 (842)
Q Consensus 629 ~--~~~y~~v~s-----~~l~g~~l~vf~r~~~~~~i~~v~~~~v~-~G~~~~~gnKG~v~i~~~i~~~~~~Fv~~HLaa 700 (842)
. +..|..+.. ..-.+-.++||.|..+. +.+.-..+ +.-...+..++++.+++.+.+..+.++|+||.+
T Consensus 71 ~~~~~~y~~~~~~~~~~~~~~~~g~ailsr~~~~----~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~v~~~Hl~~ 146 (266)
T 3teb_A 71 KYTDTDYYLHWSNSHIGFGKYNEGVAVITRHKIK----AEDEFYCTFAQSVRTISARRIVSITINYEGQDIEFYSCHMNL 146 (266)
T ss_dssp TTCCSCCEEEEEEEEECSTTEEEEEEEEESSCCS----EEEEEECSSCCCTTCTTCCEEEEEEEEETTEEEEEEEEECCC
T ss_pred HhCCCCeEEEEeccccCccccCCeEEEEECceec----CceeEEeCCCCCCCCcccceEEEEEEEeCCeEEEEEEecCCC
Confidence 2 124543311 12333355666665442 22211111 110111456899999999999999999999998
Q ss_pred CcchHHHHHHHHHHHHHhc
Q 003171 701 HLEAVNRRNADFDHVYRTM 719 (842)
Q Consensus 701 ~~~~~~~Rn~~~~~I~~~l 719 (842)
.....+.|.++++.|++.+
T Consensus 147 ~~~~~~~r~~q~~~l~~~~ 165 (266)
T 3teb_A 147 PNCETEDMGKNIQTILNRT 165 (266)
T ss_dssp TTCTTCCHHHHHHHHHTSS
T ss_pred ccCChHHHHHHHHHHHHHH
Confidence 8655667889998887754
|
| >3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482} | Back alignment and structure |
|---|
Probab=98.46 E-value=4.6e-05 Score=85.53 Aligned_cols=106 Identities=8% Similarity=0.034 Sum_probs=70.7
Q ss_pred EEEecC-CEEEEec--CCCEEEEeCCCCccccccccccccCCCCCCCCCCeeeeeecCCCeEEEEEcCCCCEEEEEeCCC
Q 003171 137 TIVCTE-EQLWAGG--ENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGHRDG 213 (842)
Q Consensus 137 ~l~~~~-~~l~~~~--D~~vrvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~V~~la~dpdg~~LaSGs~DG 213 (842)
.|+.+. ..||++. ++.|++||+++..... + ........ ++++++++.|+.+..++
T Consensus 135 ~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~------------------~---~~~~~~~~-ia~~~~g~~l~~~d~~~ 192 (409)
T 3hrp_A 135 GIAAVGNNTVLAYQRDDPRVRLISVDDNKVTT------------------V---HPGFKGGK-PAVTKDKQRVYSIGWEG 192 (409)
T ss_dssp EEEECSTTEEEEEETTTTEEEEEETTTTEEEE------------------E---EETCCBCB-CEECTTSSEEEEEBSST
T ss_pred EEEEeCCCCEEEEecCCCcEEEEECCCCEEEE------------------e---eccCCCCc-eeEecCCCcEEEEecCC
Confidence 455553 3677753 4799999987533211 0 11011222 89999999999999877
Q ss_pred --cEEEEECCCCccCCCCCcceeEEe---cc-cCCcEEEEEEec-CCCEEEeeCCCcEEEEeCCCc
Q 003171 214 --RIMCWKMNARLLDSDDGFGEVLSW---QA-HRGPVLSLCISS-YGDLWSGSEGGGIKIWPWEAI 272 (842)
Q Consensus 214 --tIrlWdl~~g~~~~~~~~~~~~~l---~g-H~~~V~slafs~-dG~L~SgS~DgtIrvWd~~t~ 272 (842)
.|.+|+..++ .....+ .. +...+.+++++| +|.|+.+..++.|+.||.++.
T Consensus 193 ~~~I~~~d~~~~--------~~~~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~ 250 (409)
T 3hrp_A 193 THTVYVYMKASG--------WAPTRIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQ 250 (409)
T ss_dssp TCEEEEEEGGGT--------TCEEEEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTC
T ss_pred CceEEEEEcCCC--------ceeEEeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCC
Confidence 6888887664 122222 12 456678999999 677877777889999998764
|
| >4gew_A 5'-tyrosyl-DNA phosphodiesterase; 5'-phosphotyrosyl-DNA diesterase, hydrolase; 2.35A {Caenorhabditis elegans} PDB: 4f1i_A | Back alignment and structure |
|---|
Probab=98.43 E-value=7.3e-07 Score=98.68 Aligned_cols=132 Identities=18% Similarity=0.158 Sum_probs=85.0
Q ss_pred eeEEEEEEEeCCCCCC-----cccccccccCCCCCceEEEEEeecccCccchhhhhhhhhhcccCCCcchhhHHHHHhhh
Q 003171 552 LKILAGTWNVGQGRAS-----QDALISWLGSAASDVGIVVVGLQEVEMGAGFLAMSAAKETVGLEGSAVGHWWLDMIGKI 626 (842)
Q Consensus 552 ~~i~~~twNv~~~~~~-----~~~l~~~l~~~~~~~di~viglQE~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~l~~~ 626 (842)
.+|-+.||||++.... ...+.+||.. .+||| |||||+.... ...|.+.
T Consensus 118 ~~lkVlSWNI~Gl~~~~~~~R~~~I~~~I~~--~~PDI--V~LQEv~~~~-----------------------~~~l~~~ 170 (362)
T 4gew_A 118 FEVSVMSWNIDGLDGRSLLTRMKAVAHIVKN--VNPDI--LFLQEVVDRD-----------------------LAPIDKL 170 (362)
T ss_dssp CEEEEEEEECCTTCCTTHHHHHHHHHHHHHH--HCCSE--EEEEEECSTT-----------------------CHHHHGG
T ss_pred CeEEEEEEEeCCCCCcCHHHHHHHHHHHHHH--cCCCE--EEEEcCChhH-----------------------hHHHHHh
Confidence 4588999999865332 1346777774 45674 6899984311 1233333
Q ss_pred ccCCCceEEEeeeeceeeEEEEEEeccccCccCceeeceeecccCcccCCCCeeEEEEEEeCeEEEEEeecCcCCcchHH
Q 003171 627 LDDGSTFERVGSRQLAGLLIAVWVRKNLKDYVGDVDVAAVPCGFGRAIGNKGAVGLRVRVYDRIMCFVNCHFAAHLEAVN 706 (842)
Q Consensus 627 l~~~~~y~~v~s~~l~g~~l~vf~r~~~~~~i~~v~~~~v~~G~~~~~gnKG~v~i~~~i~~~~~~Fv~~HLaa~~~~~~ 706 (842)
+ ..|.......-++-..+||.|+.+. .+...... +.+.....+++.+++.+.+..|.++|+||.+......
T Consensus 171 ~---~~y~~~~~~~~~~~G~aIlsk~~i~----~~~~~~~~--~~~~~~~r~~l~~~i~~~g~~l~v~ntHL~s~~~~~~ 241 (362)
T 4gew_A 171 Q---SLYKIYYSNKGCQYYTAILVSKMFD----VEKHDVIH--FQNSGMYRTLQILEGSIGGLKVFLLNTHLESTREHRP 241 (362)
T ss_dssp G---GTEEEEESSTTSSSEEEEEEETTEE----EEEEEEEE--CTTCSSCCEEEEEEEEETTEEEEEEEEECCCSGGGHH
T ss_pred c---CCceEEeCCCCCCceEEEEEeccCc----cccccccC--CCCCcccceEEEEEEEECCEEEEEEEecCCccccchh
Confidence 3 2355555555555567788886442 22222222 1112234678888999999999999999999888888
Q ss_pred HHHHHHHHHHHhc
Q 003171 707 RRNADFDHVYRTM 719 (842)
Q Consensus 707 ~Rn~~~~~I~~~l 719 (842)
+|.+++..+...+
T Consensus 242 ~R~~Q~~~l~~~~ 254 (362)
T 4gew_A 242 QRCAQFGFCMDKV 254 (362)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 8999988887654
|
| >1ako_A Exonuclease III; AP-endonuclease, DNA repair; 1.70A {Escherichia coli} SCOP: d.151.1.1 | Back alignment and structure |
|---|
Probab=98.43 E-value=5.7e-07 Score=94.07 Aligned_cols=128 Identities=15% Similarity=0.150 Sum_probs=78.2
Q ss_pred EEEEEEeCCCCCCcccccccccCCCCCceEEEEEeecccCccchhhhhhhhhhcccCCCcchhhHHHHHhhhccCCCceE
Q 003171 555 LAGTWNVGQGRASQDALISWLGSAASDVGIVVVGLQEVEMGAGFLAMSAAKETVGLEGSAVGHWWLDMIGKILDDGSTFE 634 (842)
Q Consensus 555 ~~~twNv~~~~~~~~~l~~~l~~~~~~~di~viglQE~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~l~~~l~~~~~y~ 634 (842)
-+.|||+.+.....+.+.++|.. .+|| ||||||+...... ...+.+. .+ +..|.
T Consensus 2 rv~t~Nv~~~~~~~~~i~~~i~~--~~~D--ii~LQE~~~~~~~-------------------~~~~~l~-~~--gy~~~ 55 (268)
T 1ako_A 2 KFVSFNINGLRARPHQLEAIVEK--HQPD--VIGLQETKVHDDM-------------------FPLEEVA-KL--GYNVF 55 (268)
T ss_dssp EEEEEECSCGGGCHHHHHHHHHH--HCCS--EEEEECCCCCGGG-------------------CCHHHHH-HT--TCEEE
T ss_pred EEEEEehhHHHHHHHHHHHHHHH--cCCC--EEEEEeccCChhh-------------------CCHhHhc-cC--CCcEE
Confidence 57899998765555667777764 4567 5789999653210 0011121 12 33333
Q ss_pred EEeeeeceeeEEEEEEeccccCccCceeeceeecccCc--ccCCCCeeEEEEEEeCeEEEEEeecCcCCcc-----hHHH
Q 003171 635 RVGSRQLAGLLIAVWVRKNLKDYVGDVDVAAVPCGFGR--AIGNKGAVGLRVRVYDRIMCFVNCHFAAHLE-----AVNR 707 (842)
Q Consensus 635 ~v~s~~l~g~~l~vf~r~~~~~~i~~v~~~~v~~G~~~--~~gnKG~v~i~~~i~~~~~~Fv~~HLaa~~~-----~~~~ 707 (842)
. ...-++-.++||.|..+. .+. .++.. ...+++.+.+++.+.+..|+++|+||.+... ....
T Consensus 56 ~--~~~~~~~G~ailsr~~~~----~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~Hl~~~~~~~~~~~~~~ 124 (268)
T 1ako_A 56 Y--HGQKGHYGVALLTKETPI----AVR-----RGFPGDDEEAQRRIIMAEIPSLLGNVTVINGYFPQGESRDHPIKFPA 124 (268)
T ss_dssp E--EEETTEEEEEEEESSCCS----EEE-----ESSTTCCHHHHTTEEEEEEEETTEEEEEEEEECCCCCBTTCTTHHHH
T ss_pred E--eCCCCcceEEEEEecCcc----eee-----eCCCCcccccCCCEEEEEEEcCCCeEEEEEEEecCCCCcccchhHHH
Confidence 3 223344556777887653 222 23321 1246788999999988999999999987753 3456
Q ss_pred HHHHHHHHHHhc
Q 003171 708 RNADFDHVYRTM 719 (842)
Q Consensus 708 Rn~~~~~I~~~l 719 (842)
|.+.++.|.+.+
T Consensus 125 r~~~~~~l~~~~ 136 (268)
T 1ako_A 125 KAQFYQNLQNYL 136 (268)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 777777776654
|
| >2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H* | Back alignment and structure |
|---|
Probab=98.42 E-value=0.0003 Score=77.90 Aligned_cols=69 Identities=9% Similarity=0.050 Sum_probs=49.5
Q ss_pred EEEECCCCc-EEEEeC----------CCeEEEEcC-CCCeeeeeecCCccEEE--EEecCC-EEEEEe-cCcEEEEEeCC
Q 003171 424 ALTTSIDGM-IWTGGA----------NGLLLQWDP-NGNRLQDFQYLPFAVQC--LCTFGS-QIWVGY-MNGIVQVLDLE 487 (842)
Q Consensus 424 al~~s~dg~-l~Sgs~----------DgtIrlWD~-~g~~l~~l~~H~~~V~s--ls~dG~-~LasGs-~DgtIrlWD~~ 487 (842)
.+++++|+. ++.+.. ++.|.+.|+ +++.++++.... ...+ +++||+ +++++. .+++|.++|++
T Consensus 271 ~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~~g~-~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~ 349 (373)
T 2mad_H 271 QVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISLGH-DVDAISVAQDGGPDLYALSAGTEVLHIYDAG 349 (373)
T ss_pred eEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCCEEEEEEECCC-CcCeEEECCCCCeEEEEEcCCCCeEEEEECC
Confidence 467888876 666542 357999999 678888876422 3344 467899 788877 48999999987
Q ss_pred -Cccccc
Q 003171 488 -GNLLGG 493 (842)
Q Consensus 488 -g~~i~~ 493 (842)
++.+++
T Consensus 350 t~~vv~~ 356 (373)
T 2mad_H 350 AGDQDQS 356 (373)
T ss_pred CCCEEee
Confidence 566655
|
| >2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1 | Back alignment and structure |
|---|
Probab=98.40 E-value=8.2e-05 Score=80.43 Aligned_cols=213 Identities=12% Similarity=0.113 Sum_probs=122.7
Q ss_pred EEEEe-cCCCEEEEeCCCCccccccccccccCCCCCCCCCCeeeeeecCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 003171 144 QLWAG-GENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGHRDGRIMCWKMNA 222 (842)
Q Consensus 144 ~l~~~-~D~~vrvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~V~~la~dpdg~~LaSGs~DGtIrlWdl~~ 222 (842)
.+|+. .++.|.+||.++..... + .. ...+.+++++++|+++++ +.+| |.+||..+
T Consensus 63 l~~~d~~~~~i~~~d~~~~~~~~------------------~---~~-~~~v~~i~~~~dg~l~v~-~~~g-l~~~d~~~ 118 (326)
T 2ghs_A 63 AWWFNILERELHELHLASGRKTV------------------H---AL-PFMGSALAKISDSKQLIA-SDDG-LFLRDTAT 118 (326)
T ss_dssp EEEEEGGGTEEEEEETTTTEEEE------------------E---EC-SSCEEEEEEEETTEEEEE-ETTE-EEEEETTT
T ss_pred EEEEECCCCEEEEEECCCCcEEE------------------E---EC-CCcceEEEEeCCCeEEEE-ECCC-EEEEECCC
Confidence 34454 36789999986532110 1 01 346899999999876654 4554 88999887
Q ss_pred CccCCCCCcceeEEec-cc-CCcEEEEEEecCCCEEEeeCC-----CcEEEEeCCCccceeecCCCceeeeEEEEeecee
Q 003171 223 RLLDSDDGFGEVLSWQ-AH-RGPVLSLCISSYGDLWSGSEG-----GGIKIWPWEAIEKALSLKPEERHTAALIVERSYI 295 (842)
Q Consensus 223 g~~~~~~~~~~~~~l~-gH-~~~V~slafs~dG~L~SgS~D-----gtIrvWd~~t~~~~l~~~~~~~~~~~l~~~~s~~ 295 (842)
+. +....... ++ ...+++++++|+|++|.++.+ +..+||.+++++ +.. ..
T Consensus 119 g~------~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~~g~--~~~------~~--------- 175 (326)
T 2ghs_A 119 GV------LTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVAKGK--VTK------LF--------- 175 (326)
T ss_dssp CC------EEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEETTE--EEE------EE---------
T ss_pred Cc------EEEEeeCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEeCCc--EEE------ee---------
Confidence 62 11111111 11 246899999999998755432 345566553211 100 00
Q ss_pred ecccceeccceeeeecCCEEEEEEcCCCCEEEEeC--CCcEEEEEcc--CC-cEEEEeecCCceEeeeecccCCCccccc
Q 003171 296 DLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG--FLSFALWDAR--TR-ELLKVFNIDGQIENRVDMSLLPDFAMED 370 (842)
Q Consensus 296 ~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s--~~tI~lWD~~--tg-~~l~~l~~~~~~~~~~~~s~~~~~~~~~ 370 (842)
.. ......++.++++..+|.+. .+.|.+||+. +| ++. ..
T Consensus 176 ---~~----------~~~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~-----~~------------------ 219 (326)
T 2ghs_A 176 ---AD----------ISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTG-----KA------------------ 219 (326)
T ss_dssp ---EE----------ESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSS-----CC------------------
T ss_pred ---CC----------CcccCCeEEcCCCCEEEEEECCCCEEEEEEcccccCCccc-----Cc------------------
Confidence 00 01233566677776665443 3568888864 44 210 00
Q ss_pred ceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEeecCccccCCCceEEEEECCCCcEEEEe-CCCeEEEEcCCC
Q 003171 371 EFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGMIWTGG-ANGLLLQWDPNG 449 (842)
Q Consensus 371 ~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~al~~s~dg~l~Sgs-~DgtIrlWD~~g 449 (842)
+ .+.. +.........++++++|.+|.+. .++.|.+||.+|
T Consensus 220 --~--~~~~-----------------------------------~~~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~~g 260 (326)
T 2ghs_A 220 --E--VFID-----------------------------------STGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDTDG 260 (326)
T ss_dssp --E--EEEE-----------------------------------CTTSSSEEEEEEECTTSCEEEEEETTTEEEEECTTC
T ss_pred --e--EEEE-----------------------------------CCCCCCCCCeeEECCCCCEEEEEeCCCEEEEECCCC
Confidence 0 0000 00001123457788899988776 457899999998
Q ss_pred CeeeeeecCCccEEEEEe---cCCEEEEEecC
Q 003171 450 NRLQDFQYLPFAVQCLCT---FGSQIWVGYMN 478 (842)
Q Consensus 450 ~~l~~l~~H~~~V~sls~---dG~~LasGs~D 478 (842)
+.+..+..+...+.++++ +++.|++++..
T Consensus 261 ~~~~~i~~~~~~~~~~af~g~d~~~L~vt~~~ 292 (326)
T 2ghs_A 261 NHIARYEVPGKQTTCPAFIGPDASRLLVTSAR 292 (326)
T ss_dssp CEEEEEECSCSBEEEEEEESTTSCEEEEEEBC
T ss_pred CEEEEEECCCCCcEEEEEecCCCCEEEEEecC
Confidence 888888877777888875 45678776654
|
| >3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=98.39 E-value=3e-05 Score=82.78 Aligned_cols=57 Identities=11% Similarity=0.222 Sum_probs=43.9
Q ss_pred EEECCCCcEEEEeCCCeEEEEcCCCCeeeeeecCCccEEEEEe--cCCEEEEEecCcEEEE
Q 003171 425 LTTSIDGMIWTGGANGLLLQWDPNGNRLQDFQYLPFAVQCLCT--FGSQIWVGYMNGIVQV 483 (842)
Q Consensus 425 l~~s~dg~l~Sgs~DgtIrlWD~~g~~l~~l~~H~~~V~sls~--dG~~LasGs~DgtIrl 483 (842)
++++++|.||+++.++ |.+||.+|+.+..+..+. .+.++++ +++.||.++.++..++
T Consensus 244 i~~d~~G~lwv~~~~g-v~~~~~~g~~~~~~~~~~-~~~~~~f~~d~~~L~it~~~~l~~~ 302 (305)
T 3dr2_A 244 FCVDRGGWLWSSSGTG-VCVFDSDGQLLGHIPTPG-TASNCTFDQAQQRLFITGGPCLWML 302 (305)
T ss_dssp EEECTTSCEEECCSSE-EEEECTTSCEEEEEECSS-CCCEEEECTTSCEEEEEETTEEEEE
T ss_pred EEECCCCCEEEecCCc-EEEECCCCCEEEEEECCC-ceeEEEEeCCCCEEEEEcCCeEEEE
Confidence 5678899999988665 999999999888887655 4666655 7889999887654443
|
| >3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ... | Back alignment and structure |
|---|
Probab=98.36 E-value=0.00013 Score=80.92 Aligned_cols=103 Identities=7% Similarity=-0.042 Sum_probs=69.5
Q ss_pred cCCEEEEec------CCCEEEEeCCCCccccccccccccCCCCCCCCCCeeeeeecCCCeEEEEEcCCCCEEEEEe----
Q 003171 141 TEEQLWAGG------ENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGH---- 210 (842)
Q Consensus 141 ~~~~l~~~~------D~~vrvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~V~~la~dpdg~~LaSGs---- 210 (842)
+++.+|... ++.|.|.|.++...... + . . |..| . ++++|||+.|+.++
T Consensus 43 d~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~-----------------I-~-v-G~~P-~-va~spDG~~lyVan~~~~ 100 (386)
T 3sjl_D 43 DARRVYVNDPAHFAAVTQQFVIDGEAGRVIGM-----------------I-D-G-GFLP-N-PVVADDGSFIAHASTVFS 100 (386)
T ss_dssp CTTEEEEEECGGGCSSEEEEEEETTTTEEEEE-----------------E-E-E-CSSC-E-EEECTTSSCEEEEEEEEE
T ss_pred CCCEEEEEcCcccCCCCEEEEEECCCCeEEEE-----------------E-E-C-CCCC-c-EEECCCCCEEEEEccccc
Confidence 566777632 56899999877543321 1 1 1 2445 4 99999999998876
Q ss_pred ------CCCcEEEEECCCCccCCCCCcceeEEec-cc------CCcEEEEEEecCCC-EEEee--CCCcEEEEeCCCcc
Q 003171 211 ------RDGRIMCWKMNARLLDSDDGFGEVLSWQ-AH------RGPVLSLCISSYGD-LWSGS--EGGGIKIWPWEAIE 273 (842)
Q Consensus 211 ------~DGtIrlWdl~~g~~~~~~~~~~~~~l~-gH------~~~V~slafs~dG~-L~SgS--~DgtIrvWd~~t~~ 273 (842)
.+++|.+||..+. +...++. +. ...-..++|+|||+ |+.+. .+++|-|+|+.+.+
T Consensus 101 r~~~G~~~~~VsviD~~t~--------~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~ 171 (386)
T 3sjl_D 101 RIARGERTDYVEVFDPVTL--------LPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKA 171 (386)
T ss_dssp ETTEEEEEEEEEEECTTTC--------CEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTE
T ss_pred ccccCCCCCEEEEEECCCC--------eEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCc
Confidence 3678999999986 4444432 10 01234689999998 66554 37899999998754
|
| >3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus} | Back alignment and structure |
|---|
Probab=98.31 E-value=0.00011 Score=82.79 Aligned_cols=103 Identities=7% Similarity=-0.085 Sum_probs=68.5
Q ss_pred cCCEEEEec--C----CCEEEEeCCCCccccccccccccCCCCCCCCCCeeeeeecCCCeEEEEEcCCCCEEEEEe----
Q 003171 141 TEEQLWAGG--E----NGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGH---- 210 (842)
Q Consensus 141 ~~~~l~~~~--D----~~vrvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~V~~la~dpdg~~LaSGs---- 210 (842)
+...+|+.. + +.|.+.|.++...... + . + |..| -++++|||+.|+.+.
T Consensus 83 ~~~~vyV~n~~~~~~~~~VsVID~~t~~vv~~-----------------I-~-v-G~~P--gia~SpDgk~lyVan~~~~ 140 (426)
T 3c75_H 83 DARRVYIQDPAHFAAITQQFVIDGSTGRILGM-----------------T-D-G-GFLP--HPVAAEDGSFFAQASTVFE 140 (426)
T ss_dssp CTTEEEEEECTTTCSSEEEEEEETTTTEEEEE-----------------E-E-E-CSSC--EEEECTTSSCEEEEEEEEE
T ss_pred CCCEEEEECCCcCCCCCeEEEEECCCCEEEEE-----------------E-E-C-CCCC--ceEECCCCCEEEEEecccc
Confidence 445566532 2 6899999987554321 1 1 1 2445 799999999999887
Q ss_pred ------CCCcEEEEECCCCccCCCCCcceeEEec-c------cCCcEEEEEEecCCC-EEEeeC--CCcEEEEeCCCcc
Q 003171 211 ------RDGRIMCWKMNARLLDSDDGFGEVLSWQ-A------HRGPVLSLCISSYGD-LWSGSE--GGGIKIWPWEAIE 273 (842)
Q Consensus 211 ------~DGtIrlWdl~~g~~~~~~~~~~~~~l~-g------H~~~V~slafs~dG~-L~SgS~--DgtIrvWd~~t~~ 273 (842)
.+++|.++|..+. +.+.++. + +...-..++|+|||+ |+.+.. +++|-+.|+.+.+
T Consensus 141 ~~~~G~~~~~VsviD~~t~--------~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~k 211 (426)
T 3c75_H 141 RIARGKRTDYVEVFDPVTF--------LPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKT 211 (426)
T ss_dssp ETTEEEEEEEEEEECTTTC--------CEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTE
T ss_pred ccccCCCCCEEEEEECCCC--------cEEEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCe
Confidence 3678999999886 3443332 1 011234688999998 666653 6889999997743
|
| >1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C* | Back alignment and structure |
|---|
Probab=98.23 E-value=1.5e-05 Score=88.74 Aligned_cols=99 Identities=11% Similarity=0.067 Sum_probs=79.5
Q ss_pred eEEEEECCCCc-EEEEeCCCeEEEEcC-CCCeeeeeecCCccEEEEEecCCEEEEEecCcEEEEEeCC-Ccccccccccc
Q 003171 422 TEALTTSIDGM-IWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQCLCTFGSQIWVGYMNGIVQVLDLE-GNLLGGWVAHS 498 (842)
Q Consensus 422 v~al~~s~dg~-l~Sgs~DgtIrlWD~-~g~~l~~l~~H~~~V~sls~dG~~LasGs~DgtIrlWD~~-g~~i~~l~gH~ 498 (842)
|.+|+| |+. |+++ .++.|++||+ +.........|...|.++.+....+++++.||+|.+||++ ++... +.
T Consensus 90 V~~l~f--d~~~L~v~-~~~~l~v~dv~sl~~~~~~~~~~~~v~~i~~~~p~~av~~~dG~L~v~dl~~~~~~~----~~ 162 (388)
T 1xip_A 90 VIFVCF--HGDQVLVS-TRNALYSLDLEELSEFRTVTSFEKPVFQLKNVNNTLVILNSVNDLSALDLRTKSTKQ----LA 162 (388)
T ss_dssp EEEEEE--ETTEEEEE-ESSEEEEEESSSTTCEEEEEECSSCEEEEEECSSEEEEEETTSEEEEEETTTCCEEE----EE
T ss_pred eeEEEE--CCCEEEEE-cCCcEEEEEchhhhccCccceeecceeeEEecCCCEEEEECCCCEEEEEccCCcccc----cc
Confidence 778889 555 6776 8899999999 4444455667788888887766569999999999999997 44432 56
Q ss_pred cCEEEEEeCCCEEEEEcCCCCeeeccccC
Q 003171 499 SPVIKMAVGAGYIFTLANHGGIRGWNVTS 527 (842)
Q Consensus 499 ~~V~sla~dg~~l~S~S~DgtIrvWd~~~ 527 (842)
..|.|++++++.++.|..||+|++|+...
T Consensus 163 ~~Vs~v~WSpkG~~vg~~dg~i~~~~~~~ 191 (388)
T 1xip_A 163 QNVTSFDVTNSQLAVLLKDRSFQSFAWRN 191 (388)
T ss_dssp ESEEEEEECSSEEEEEETTSCEEEEEEET
T ss_pred CCceEEEEcCCceEEEEcCCcEEEEcCCC
Confidence 78999999888899999999999997644
|
| >2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A* | Back alignment and structure |
|---|
Probab=98.17 E-value=0.00036 Score=74.94 Aligned_cols=70 Identities=10% Similarity=0.109 Sum_probs=51.4
Q ss_pred CeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEec--------------------ccCCcEEEEEEec-
Q 003171 193 SVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQ--------------------AHRGPVLSLCISS- 251 (842)
Q Consensus 193 ~V~~la~dpdg~~LaSGs~DGtIrlWdl~~g~~~~~~~~~~~~~l~--------------------gH~~~V~slafs~- 251 (842)
...+++++++|+++|++..++.|..|+..++ ....+. +..+.+.+|++++
T Consensus 20 ~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~---------~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~ 90 (322)
T 2fp8_A 20 APNSFTFDSTNKGFYTSVQDGRVIKYEGPNS---------GFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQ 90 (322)
T ss_dssp CCCCEECCTTCSSEEEECTTSEEEEECCTTT---------CEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETT
T ss_pred CceEEEEcCCCCEEEEEcCCCeEEEECCCCC---------ceEEEecccccccccccccccchhccccCCCCceEEEcCC
Confidence 3456889999988999999999999988764 122221 1113578999997
Q ss_pred CCCEEEeeCCCcEEEEeCCC
Q 003171 252 YGDLWSGSEGGGIKIWPWEA 271 (842)
Q Consensus 252 dG~L~SgS~DgtIrvWd~~t 271 (842)
+|+||.+...+.|.++|..+
T Consensus 91 ~g~l~v~d~~~~i~~~d~~~ 110 (322)
T 2fp8_A 91 NNQLYIVDCYYHLSVVGSEG 110 (322)
T ss_dssp TTEEEEEETTTEEEEECTTC
T ss_pred CCcEEEEECCCCEEEEeCCC
Confidence 88898886666688888754
|
| >2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.15 E-value=2.9e-07 Score=102.07 Aligned_cols=94 Identities=15% Similarity=0.137 Sum_probs=51.8
Q ss_pred CCcEEEEeCCCeEEEEcC-CCCeeeeeecCCccEEEEEecCCEEEEEecCcEEEEEeCC-CcccccccccccCEEEEEeC
Q 003171 430 DGMIWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQCLCTFGSQIWVGYMNGIVQVLDLE-GNLLGGWVAHSSPVIKMAVG 507 (842)
Q Consensus 430 dg~l~Sgs~DgtIrlWD~-~g~~l~~l~~H~~~V~sls~dG~~LasGs~DgtIrlWD~~-g~~i~~l~gH~~~V~sla~d 507 (842)
++.+++|+.|+.|+.||. +|+.+.++..+.. ...++++..|++|+.|++|+.||.+ |+.+-.+..+. ..+.+.+
T Consensus 92 ~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~~--~~~~p~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~~~--~~~~~~~ 167 (369)
T 2hz6_A 92 DGILYMGKKQDIWYVIDLLTGEKQQTLSSAFA--DSLSPSTSLLYLGRTEYTITMYDTKTRELRWNATYFD--YAASLPE 167 (369)
T ss_dssp ---CCCCEEEEEEEEECCC------------------------EEEEEEEEEEECCCSSSSSCCCEEEEEE--ECCBCCC
T ss_pred CCEEEEEeCCCEEEEEECCCCcEEEEecCCCc--ccccccCCEEEEEecCCEEEEEECCCCCEEEeEeccc--ccCcccc
Confidence 456777888999999999 7988877765542 2345678899999999999999986 77654443222 1222233
Q ss_pred C-----CEEEEEcCCCCeeeccccC
Q 003171 508 A-----GYIFTLANHGGIRGWNVTS 527 (842)
Q Consensus 508 g-----~~l~S~S~DgtIrvWd~~~ 527 (842)
+ ..++.++.|+.|..||..+
T Consensus 168 ~~~~~~~~v~~~~~dg~v~a~d~~t 192 (369)
T 2hz6_A 168 DDVDYKMSHFVSNGDGLVVTVDSES 192 (369)
T ss_dssp CCTTCCCCEEEEETSCEEEEECTTT
T ss_pred CCccccceEEEECCCCEEEEEECCC
Confidence 3 5678889999999999765
|
| >1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=98.07 E-value=0.0003 Score=84.37 Aligned_cols=54 Identities=9% Similarity=0.025 Sum_probs=39.0
Q ss_pred CcEEEEEeCC-CcccccccccccCEE-EEEeCCCEEEEEcCCCCeeeccccCCCCC
Q 003171 478 NGIVQVLDLE-GNLLGGWVAHSSPVI-KMAVGAGYIFTLANHGGIRGWNVTSPGPL 531 (842)
Q Consensus 478 DgtIrlWD~~-g~~i~~l~gH~~~V~-sla~dg~~l~S~S~DgtIrvWd~~~~~~~ 531 (842)
+|+|+.||++ |+.+-....|..... .+...+..++.++.|+.++.||.++...+
T Consensus 454 ~g~l~A~D~~tG~~~W~~~~~~~~~~g~~~tagglvf~gt~dg~l~a~D~~tG~~l 509 (689)
T 1yiq_A 454 SGKLIAWDPVKQQAAWEVPYVTIFNGGTLSTAGNLVFEGSADGRVIAYAADTGEKL 509 (689)
T ss_dssp EEEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEE
T ss_pred ceeEEEEECCCCCeEeEccCCCCccCccceECCCEEEEECCCCcEEEEECCCCccc
Confidence 4889999996 776544444432222 34567889999999999999998876543
|
| >1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=98.07 E-value=0.00017 Score=86.40 Aligned_cols=117 Identities=14% Similarity=0.075 Sum_probs=65.9
Q ss_pred cCCEEEEec-CCCEEEEeCCCCccccccccccccCCCCCCCCCC--eeeeeecCCCeEEEEEcCCCCEEEEEeCCCcEEE
Q 003171 141 TEEQLWAGG-ENGLRVWNLKELYDESESDSVSVSKSKGEDGTAP--FKESVKGVSSVMCMVGDEASGVVWSGHRDGRIMC 217 (842)
Q Consensus 141 ~~~~l~~~~-D~~vrvWdl~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~g~~~V~~la~dpdg~~LaSGs~DGtIrl 217 (842)
.++.+|+++ ++.|.-+|.+++...... .. .......+ +..... . .+++ +++.|+.++.|+.+..
T Consensus 76 ~~g~vyv~~~~~~v~AlD~~tG~~~W~~---~~---~~~~~~~~~~~~~~~~-~----~~a~--~~~~v~v~~~dg~l~a 142 (677)
T 1kb0_A 76 VDGIMYVSASWSVVHAIDTRTGNRIWTY---DP---QIDRSTGFKGCCDVVN-R----GVAL--WKGKVYVGAWDGRLIA 142 (677)
T ss_dssp ETTEEEEECGGGCEEEEETTTTEEEEEE---CC---CCCGGGGGGSSSCSCC-C----CCEE--ETTEEEEECTTSEEEE
T ss_pred ECCEEEEECCCCeEEEEECCCCcEEEEE---cC---CCCccccccccccCCC-C----CceE--ECCEEEEEcCCCEEEE
Confidence 567777754 678888998776544320 00 00000000 000000 1 1233 3578999999999999
Q ss_pred EECCCCccCCCCCcceeEEeccc-C----CcEEEEEEecCCCEEEeeC------CCcEEEEeCCCccceeec
Q 003171 218 WKMNARLLDSDDGFGEVLSWQAH-R----GPVLSLCISSYGDLWSGSE------GGGIKIWPWEAIEKALSL 278 (842)
Q Consensus 218 Wdl~~g~~~~~~~~~~~~~l~gH-~----~~V~slafs~dG~L~SgS~------DgtIrvWd~~t~~~~l~~ 278 (842)
+|..+| +.+-++..+ . ..+++--...++.++.++. ++.|+.+|..+++...++
T Consensus 143 lD~~tG--------~~~W~~~~~~~~~~~~~~~~~p~v~~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~ 206 (677)
T 1kb0_A 143 LDAATG--------KEVWHQNTFEGQKGSLTITGAPRVFKGKVIIGNGGAEYGVRGYITAYDAETGERKWRW 206 (677)
T ss_dssp EETTTC--------CEEEEEETTTTCCSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEE
T ss_pred EECCCC--------CEEeeecCCcCcCcCcccccCcEEECCEEEEEecccccCCCCEEEEEECCCCcEEEEe
Confidence 999998 555444433 1 1222211122566665553 799999999988766554
|
| >3g6s_A Putative endonuclease/exonuclease/phosphatase family protein; alpha-beta protein, structural genomics, PSI-2; 2.50A {Bacteroides vulgatus atcc 8482} | Back alignment and structure |
|---|
Probab=98.04 E-value=1.3e-05 Score=84.04 Aligned_cols=134 Identities=19% Similarity=0.291 Sum_probs=75.3
Q ss_pred eEEEEEEEeCCCCCCc---------ccccccccCCCCCceEEEEEeecccCccchhhhhhhhhhcccCCCcchhhHHHHH
Q 003171 553 KILAGTWNVGQGRASQ---------DALISWLGSAASDVGIVVVGLQEVEMGAGFLAMSAAKETVGLEGSAVGHWWLDMI 623 (842)
Q Consensus 553 ~i~~~twNv~~~~~~~---------~~l~~~l~~~~~~~di~viglQE~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~l 623 (842)
.+-+.|||+....+.. +.+.++|.. .++| ||||||+... ..+.|
T Consensus 3 ~l~v~t~Ni~~~~~~~~~~~~~~r~~~i~~~i~~--~~~D--Iv~LQEv~~~-----------------------~~~~l 55 (267)
T 3g6s_A 3 DVRWATFNIRYDNPQDSLNNWQYRKDRVCQFIKD--HELD--IVGMQEVLHN-----------------------QFQDL 55 (267)
T ss_dssp EEEEEEEECCCCCGGGGGGSGGGTHHHHHHHHHH--TTCS--EEEEESBCHH-----------------------HHHHH
T ss_pred cEEEEEEEeccCCCCccccCHHHHHHHHHHHHHH--cCCC--EEEEecCCHH-----------------------HHHHH
Confidence 3788999998665321 223344442 3567 5689998631 12334
Q ss_pred hhhccCCCceEEEeeee----ceeeEEEEEEeccccCccCcee--eceee-----cccCcccCCCCeeEEEEEE--eCeE
Q 003171 624 GKILDDGSTFERVGSRQ----LAGLLIAVWVRKNLKDYVGDVD--VAAVP-----CGFGRAIGNKGAVGLRVRV--YDRI 690 (842)
Q Consensus 624 ~~~l~~~~~y~~v~s~~----l~g~~l~vf~r~~~~~~i~~v~--~~~v~-----~G~~~~~gnKG~v~i~~~i--~~~~ 690 (842)
.+.| . .|..+.... -.|-.+.||.|++-.+.+..-. ....+ .|.. ...+++++.+.|.. .+..
T Consensus 56 ~~~l-~--~y~~~~~~~~~~~~~g~~~ail~~~s~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~R~~~~~~~~~~~~~~~ 131 (267)
T 3g6s_A 56 RAGL-P--EYDGIGVGRDDGKTAGEYAPLFYRKDKYEVLDSNTFWLAENPDSVGMMGWD-AVCVRIATWAKFKDKATGKI 131 (267)
T ss_dssp HHHC-T--TEEEECCCTTTSSSSSCBCCEEEETTTEEEEEEEEEESSSCTTSTTCCCTT-CSSCCEEEEEEEEETTTCCE
T ss_pred HHhc-c--CCcEEEecCCCCCcCCceeEEEEEccceEEEecccEecCCCCCcccccccc-ccCcceEEEEEEEEcCCCCE
Confidence 4445 2 344444221 2344467777765433221111 11000 1111 12467888888885 5789
Q ss_pred EEEEeecCcCCcchHHHHHHHHHHHHHhc
Q 003171 691 MCFVNCHFAAHLEAVNRRNADFDHVYRTM 719 (842)
Q Consensus 691 ~~Fv~~HLaa~~~~~~~Rn~~~~~I~~~l 719 (842)
|+++|+||.... ...|.++.+.|.+.+
T Consensus 132 ~~v~~~Hl~~~~--~~~R~~q~~~l~~~l 158 (267)
T 3g6s_A 132 FMAVNTHFDHVG--EEARRQSALLIIRKI 158 (267)
T ss_dssp EEEEEEECCSSC--HHHHHHHHHHHHHHH
T ss_pred EEEEEeCCCCCC--HHHHHHHHHHHHHHH
Confidence 999999998753 466777777777664
|
| >3l1w_A Uncharacterized protein; APC29019.2, conserved protein, enterococcus faecalis V583, PSI-2, MCSG, structural genomics; 1.60A {Enterococcus faecalis} | Back alignment and structure |
|---|
Probab=98.03 E-value=1.3e-05 Score=83.50 Aligned_cols=133 Identities=13% Similarity=0.025 Sum_probs=76.3
Q ss_pred EEEEEEeCCCCCCcc---------cccccccCCCCCceEEEEEeecccCccchhhhhhhhhhcccCCCcchhhHHHHHhh
Q 003171 555 LAGTWNVGQGRASQD---------ALISWLGSAASDVGIVVVGLQEVEMGAGFLAMSAAKETVGLEGSAVGHWWLDMIGK 625 (842)
Q Consensus 555 ~~~twNv~~~~~~~~---------~l~~~l~~~~~~~di~viglQE~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~l~~ 625 (842)
-+.|||+....+... .+.++|.. .+||| |||||+... ..+.|.+
T Consensus 2 rv~t~Ni~~~~~~~~~~~w~~r~~~i~~~i~~--~~~DI--v~LQEv~~~-----------------------~~~~l~~ 54 (257)
T 3l1w_A 2 KIATYNVRVDTEYDQDWQWSFRKEAVCQLINF--HDWSL--CCIQEVRPN-----------------------QVRDLKA 54 (257)
T ss_dssp EEEEEECCCCCGGGGGGSHHHHHHHHHHHHHH--HCCSE--EEEEEECHH-----------------------HHHHHHH
T ss_pred EEEEEEeccCCCCccccChHHHHHHHHHHHHH--cCCCE--EEEeCCCHH-----------------------HHHHHHh
Confidence 578999987654321 24444442 34565 689998631 1223334
Q ss_pred hccCCCceEEEeeee-ceeeEEEEEEeccccCccCceee--ce----eecccCcccCCCCeeEEEEEEe--CeEEEEEee
Q 003171 626 ILDDGSTFERVGSRQ-LAGLLIAVWVRKNLKDYVGDVDV--AA----VPCGFGRAIGNKGAVGLRVRVY--DRIMCFVNC 696 (842)
Q Consensus 626 ~l~~~~~y~~v~s~~-l~g~~l~vf~r~~~~~~i~~v~~--~~----v~~G~~~~~gnKG~v~i~~~i~--~~~~~Fv~~ 696 (842)
.| ++.|....... ..+-.+.||.|++-.+.+..-.. .. ...+. +....++++.+++... +..+.++|+
T Consensus 55 ~l--~y~~~~~~~~~~~~~~g~ail~r~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~r~~~~~~~~~~~~g~~~~v~~~ 131 (257)
T 3l1w_A 55 YT--TFTCLSAEREGDGQGEGLAILYNEQKVQAIDTGYFWLSETPQQPSIHP-EAGCPRIALWGLFKETTQNTPFLVINV 131 (257)
T ss_dssp HS--SSEEEEEESSSSSCSCEEEEEECTTTEEEEEEEEEESSSSTTSSCCCT-TCSSCCEEEEEEEEETTCSSCEEEEEE
T ss_pred cC--CCcEEEecccCCCCCceEEEEEEcceEEEEecCeEECcCCCCcccccc-cccccceeEEEEEEEcCCCCEEEEEEe
Confidence 44 33333222211 35566788888764322211111 10 01111 2234788888999884 689999999
Q ss_pred cCcCCcchHHHHHHHHHHHHHhc
Q 003171 697 HFAAHLEAVNRRNADFDHVYRTM 719 (842)
Q Consensus 697 HLaa~~~~~~~Rn~~~~~I~~~l 719 (842)
||.+.. -..|.+++..|.+.+
T Consensus 132 Hl~~~~--~~~r~~q~~~l~~~i 152 (257)
T 3l1w_A 132 HLDHIS--AHARLAGMTVILEEL 152 (257)
T ss_dssp ECCSSC--HHHHHHHHHHHHHHT
T ss_pred CCCCCC--HHHHHHHHHHHHHHH
Confidence 998763 357888888888765
|
| >1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=98.02 E-value=0.00037 Score=83.54 Aligned_cols=81 Identities=26% Similarity=0.437 Sum_probs=55.1
Q ss_pred CCeEEEEcC-CCCeeeeeecCCccEE-EEEecCCEEEEEecCcEEEEEeCC-CcccccccccccCE---EEEEeCCC-EE
Q 003171 439 NGLLLQWDP-NGNRLQDFQYLPFAVQ-CLCTFGSQIWVGYMNGIVQVLDLE-GNLLGGWVAHSSPV---IKMAVGAG-YI 511 (842)
Q Consensus 439 DgtIrlWD~-~g~~l~~l~~H~~~V~-sls~dG~~LasGs~DgtIrlWD~~-g~~i~~l~gH~~~V---~sla~dg~-~l 511 (842)
+|+|+.||+ +|+.+-++..+..... .+...|..++.|+.||.|++||.+ |+.+-.+..+.+.+ .....+|+ ++
T Consensus 454 ~g~l~A~D~~tG~~~W~~~~~~~~~~g~~~tagglvf~gt~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~ty~~~G~qyv 533 (689)
T 1yiq_A 454 SGKLIAWDPVKQQAAWEVPYVTIFNGGTLSTAGNLVFEGSADGRVIAYAADTGEKLWEQPAASGVMAAPVTYSVDGEQYV 533 (689)
T ss_dssp EEEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEE
T ss_pred ceeEEEEECCCCCeEeEccCCCCccCccceECCCEEEEECCCCcEEEEECCCCccceeeeCCCCcccCceEEEECCEEEE
Confidence 478999999 7887766655443222 456688899999999999999987 88877666553322 12245776 45
Q ss_pred EEEcCCCC
Q 003171 512 FTLANHGG 519 (842)
Q Consensus 512 ~S~S~Dgt 519 (842)
+..+..|.
T Consensus 534 ~~~~G~gg 541 (689)
T 1yiq_A 534 TFMAGWGG 541 (689)
T ss_dssp EEEECCCT
T ss_pred EEEecCCc
Confidence 55544443
|
| >3mpr_A Putative endonuclease/exonuclease/phosphatase FAM protein; structural genomics, PSI-2, protein structure initiative; HET: MSE PEG; 1.90A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=98.01 E-value=1.1e-05 Score=86.35 Aligned_cols=134 Identities=17% Similarity=0.173 Sum_probs=76.6
Q ss_pred eEEEEEEEeCCCCCCc-----------ccccccccCCCCCceEEEEEeecccCccchhhhhhhhhhcccCCCcchhhHHH
Q 003171 553 KILAGTWNVGQGRASQ-----------DALISWLGSAASDVGIVVVGLQEVEMGAGFLAMSAAKETVGLEGSAVGHWWLD 621 (842)
Q Consensus 553 ~i~~~twNv~~~~~~~-----------~~l~~~l~~~~~~~di~viglQE~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~ 621 (842)
.+.+.|||+....+.. +.+.++|.. .+|| ||||||+... ..+
T Consensus 6 ~lrV~t~Ni~~~~~~~~~~~~~w~~r~~~i~~~i~~--~~~D--Iv~LQEv~~~-----------------------~~~ 58 (298)
T 3mpr_A 6 SLTVASYNLRNANGSDSARGDGWGQRYPVIAQMVQY--HDFD--IFGTQECFLH-----------------------QLK 58 (298)
T ss_dssp EEEEEEEECCCCCHHHHHHTCCHHHHHHHHHHHHHH--TTCS--EEEEESBCHH-----------------------HHH
T ss_pred cEEEEEEEeccCCCCCcccccCHHHHHHHHHHHHHH--cCCC--EEEEeCCCHH-----------------------HHH
Confidence 4889999996554311 224444443 4667 5789998621 133
Q ss_pred HHhhhccCCCceEEEeeee----ceeeEEEEEEeccccCccCcee--ec----eeecccCcccCCCCeeEEEEEE--eCe
Q 003171 622 MIGKILDDGSTFERVGSRQ----LAGLLIAVWVRKNLKDYVGDVD--VA----AVPCGFGRAIGNKGAVGLRVRV--YDR 689 (842)
Q Consensus 622 ~l~~~l~~~~~y~~v~s~~----l~g~~l~vf~r~~~~~~i~~v~--~~----~v~~G~~~~~gnKG~v~i~~~i--~~~ 689 (842)
.|.+.|. .|..++... -.|-.+.||.|++-.+.+..-. .. ....|.. ..-+++++.+.|.. .+.
T Consensus 59 ~l~~~l~---~y~~~~~~~~~g~~~g~~~aily~~sr~~i~~~~~~~l~~~p~~~~~~~~-~~~~R~~~~~~~~~~~~g~ 134 (298)
T 3mpr_A 59 DMKEALP---GYDYIGVGRDDGKDKGEHSAIFYRTDKFDIVEKGDFWLSETPDVPSKGWD-AVLPRICSWGHFKCKDTGF 134 (298)
T ss_dssp HHHHHST---TEEEECCCTTTSSSSSCBCCEEEETTTEEEEEEEEEESSSSTTSSCCCTT-CSSCCEEEEEEEEETTTCC
T ss_pred HHHHhCC---CCcEEEEecCCCCCCCceeEEEEecCceEEEeccEEEccCCCCccCcccc-cccCceeEEEEEEEcCCCC
Confidence 4555552 354444332 2344467776665433221111 00 0011221 12367788888884 678
Q ss_pred EEEEEeecCcCCcchHHHHHHHHHHHHHhc
Q 003171 690 IMCFVNCHFAAHLEAVNRRNADFDHVYRTM 719 (842)
Q Consensus 690 ~~~Fv~~HLaa~~~~~~~Rn~~~~~I~~~l 719 (842)
.|+++|+||.+.. ...|.++...|.+.+
T Consensus 135 ~~~v~~~Hl~~~~--~~~R~~q~~~l~~~i 162 (298)
T 3mpr_A 135 EFLFFNLHMDHIG--KKARVESAFLVQEKM 162 (298)
T ss_dssp EEEEEEEECCSSC--HHHHHHHHHHHHHHH
T ss_pred EEEEEEecCCCCC--HHHHHHHHHHHHHHH
Confidence 9999999998542 467888888887765
|
| >1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1 | Back alignment and structure |
|---|
Probab=97.99 E-value=0.00015 Score=80.24 Aligned_cols=90 Identities=7% Similarity=-0.221 Sum_probs=63.3
Q ss_pred CEEEEeCCCCccccccccccccCCCCCCCCCCeeeeeecCCCeEEEEEcCCCCEEEEEe----------CCCcEEEEECC
Q 003171 152 GLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGH----------RDGRIMCWKMN 221 (842)
Q Consensus 152 ~vrvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~V~~la~dpdg~~LaSGs----------~DGtIrlWdl~ 221 (842)
+|.|.|.++...... + . + |..| .++++||++.||.+. .+++|.+||+.
T Consensus 47 ~vsvID~~t~~v~~~-----------------i-~-v-G~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~ 104 (368)
T 1mda_H 47 ENWVSCAGCGVTLGH-----------------S-L-G-AFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPV 104 (368)
T ss_dssp EEEEEETTTTEEEEE-----------------E-E-E-CTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTT
T ss_pred eEEEEECCCCeEEEE-----------------E-e-C-CCCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECC
Confidence 788999887554321 1 1 1 2456 699999999999997 37899999999
Q ss_pred CCccCCCCCcceeEEecccC-------CcEEEEEEecCCC-EEEeeC--CCcEEE--EeCCC
Q 003171 222 ARLLDSDDGFGEVLSWQAHR-------GPVLSLCISSYGD-LWSGSE--GGGIKI--WPWEA 271 (842)
Q Consensus 222 ~g~~~~~~~~~~~~~l~gH~-------~~V~slafs~dG~-L~SgS~--DgtIrv--Wd~~t 271 (842)
++ +.+.++.-+. ..-..++|||||+ |+.+.. +..|.+ +|+.+
T Consensus 105 T~--------~vv~~I~v~~~~~~~~g~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t 158 (368)
T 1mda_H 105 TF--------LPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD 158 (368)
T ss_dssp TC--------CEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE
T ss_pred CC--------CEEEEEECCCccccccCCCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh
Confidence 97 5555553220 1234789999997 776653 467888 98855
|
| >1zwx_A SMCL, sphingomyelinase-C; dnase1-like fold, beta-hairpin, hydrolase; 1.90A {Listeria ivanovii} SCOP: d.151.1.3 | Back alignment and structure |
|---|
Probab=97.96 E-value=2.1e-05 Score=83.87 Aligned_cols=46 Identities=13% Similarity=0.179 Sum_probs=38.5
Q ss_pred cCCCCeeEEEEEEeCeEEEEEeecCcCCc------chHHHHHHHHHHHHHhc
Q 003171 674 IGNKGAVGLRVRVYDRIMCFVNCHFAAHL------EAVNRRNADFDHVYRTM 719 (842)
Q Consensus 674 ~gnKG~v~i~~~i~~~~~~Fv~~HLaa~~------~~~~~Rn~~~~~I~~~l 719 (842)
..+||++.+++.+.+..+.++|+||.+.. .....|.++++.|.+.+
T Consensus 128 ~~~r~~~~~~~~~~g~~~~v~~~Hl~~~~~~~~~~~~~~~R~~q~~~l~~~i 179 (301)
T 1zwx_A 128 LSNKGFAYVKIMKNGKPYHIIGTHTQADDSLISKDTSRAIRAEQMQEIQTFI 179 (301)
T ss_dssp GBCCEEEEEEEEETTEEEEEEEEECCCCCTTSCHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCCeEEEEEEECCEEEEEEEecCCCCCCCCCccccHHHHHHHHHHHHHHH
Confidence 35899999999999999999999999873 35677888988887764
|
| >3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A* | Back alignment and structure |
|---|
Probab=97.96 E-value=0.00014 Score=87.25 Aligned_cols=105 Identities=15% Similarity=0.127 Sum_probs=70.4
Q ss_pred eEEEEECCCCc-E-EEEeC---CCeEEEEcCC-CC-eeeeeecCCccEEE-EEecCCEEEEEec-C---cEEEEEeCCC-
Q 003171 422 TEALTTSIDGM-I-WTGGA---NGLLLQWDPN-GN-RLQDFQYLPFAVQC-LCTFGSQIWVGYM-N---GIVQVLDLEG- 488 (842)
Q Consensus 422 v~al~~s~dg~-l-~Sgs~---DgtIrlWD~~-g~-~l~~l~~H~~~V~s-ls~dG~~LasGs~-D---gtIrlWD~~g- 488 (842)
...+.+||||+ | ++.+. +..|.+||++ ++ .++.+..+...+.. +.++|++|+.-+. + +.|.+||+++
T Consensus 236 ~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~~~~~~~~~~~~g~~l~~~t~~~~~~~~l~~~d~~~~ 315 (693)
T 3iuj_A 236 YVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQGDLDADVSLVDNKGSTLYLLTNRDAPNRRLVTVDAANP 315 (693)
T ss_dssp EEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEECSSSSCEEEEEEETTEEEEEECTTCTTCEEEEEETTSC
T ss_pred EEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEeCCCCceEEEEeccCCEEEEEECCCCCCCEEEEEeCCCC
Confidence 44567899997 4 33332 3579999994 42 56677777766655 5678886665443 3 6899999873
Q ss_pred cc--cccccccccCEEEEEeCCCEEEEEcCCC---Ceeecccc
Q 003171 489 NL--LGGWVAHSSPVIKMAVGAGYIFTLANHG---GIRGWNVT 526 (842)
Q Consensus 489 ~~--i~~l~gH~~~V~sla~dg~~l~S~S~Dg---tIrvWd~~ 526 (842)
.. .+.+..|...+.++++++++|+....++ .|++|++.
T Consensus 316 ~~~~~~~l~~~~~~~~~~s~~g~~lv~~~~~~g~~~l~~~d~~ 358 (693)
T 3iuj_A 316 GPAHWRDLIPERQQVLTVHSGSGYLFAEYMVDATARVEQFDYE 358 (693)
T ss_dssp CGGGCEEEECCCSSCEEEEEETTEEEEEEEETTEEEEEEECTT
T ss_pred CccccEEEecCCCCEEEEEEECCEEEEEEEECCeeEEEEEECC
Confidence 33 4567777766557778888877655544 57888764
|
| >1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1 | Back alignment and structure |
|---|
Probab=97.84 E-value=0.014 Score=60.41 Aligned_cols=74 Identities=9% Similarity=0.048 Sum_probs=49.1
Q ss_pred eEEEEECCCC-cEE-EEeCCCeEEEEcCCCCeeeeeecCCccEEEEEecCCEEEEEec-CcEEEEEeCC-Cccccccc
Q 003171 422 TEALTTSIDG-MIW-TGGANGLLLQWDPNGNRLQDFQYLPFAVQCLCTFGSQIWVGYM-NGIVQVLDLE-GNLLGGWV 495 (842)
Q Consensus 422 v~al~~s~dg-~l~-Sgs~DgtIrlWD~~g~~l~~l~~H~~~V~sls~dG~~LasGs~-DgtIrlWD~~-g~~i~~l~ 495 (842)
...+++++++ .|+ +-...+.|.++|.+|..+..+.........+++++.+|+.+.. .+.|.++|.+ |+.+.++.
T Consensus 169 P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~P~gi~~d~~~lyva~~~~~~v~~~d~~~g~~~~~i~ 246 (267)
T 1npe_A 169 PNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLEGLQYPFAVTSYGKNLYYTDWKTNSVIAMDLAISKEMDTFH 246 (267)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEECCCSEEEEEEETTEEEEEETTTTEEEEEETTTTEEEEEEC
T ss_pred CcEEEEcCCCCEEEEEECCCCEEEEEecCCCceEEEecCCCCceEEEEeCCEEEEEECCCCeEEEEeCCCCCceEEEc
Confidence 4467788864 564 4445678999999764443332222334577788887777664 6899999986 77666654
|
| >2jc4_A Exodeoxyribonuclease III; hydrolase, repair phosphodiesterase, DNA repair, exonuclease, endonuclease; HET: 1PE; 1.90A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=97.83 E-value=3.4e-05 Score=79.81 Aligned_cols=125 Identities=16% Similarity=0.095 Sum_probs=65.2
Q ss_pred EEEEEEeCCCCCCcccccccccCCCCCceEEEEEeecccCccchhhhhhhhhhcccCCCcchhhHHHHHhhhccCCCceE
Q 003171 555 LAGTWNVGQGRASQDALISWLGSAASDVGIVVVGLQEVEMGAGFLAMSAAKETVGLEGSAVGHWWLDMIGKILDDGSTFE 634 (842)
Q Consensus 555 ~~~twNv~~~~~~~~~l~~~l~~~~~~~di~viglQE~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~l~~~l~~~~~y~ 634 (842)
-+.|||+.+.....+.+.++|.. .+||| |+|||+...... ...+.+. . ..|.
T Consensus 2 rv~t~Nv~~~~~~~~~i~~~i~~--~~~DI--v~LQE~~~~~~~-------------------~~~~~~~-~----~gy~ 53 (256)
T 2jc4_A 2 KITTWNVNSLNVRLPQVQNLLAD--NPPDI--LVLQELKLDQDK-------------------FPAAALQ-M----MGWH 53 (256)
T ss_dssp EEEEEECSCHHHHHHHHHHHHHS--SCCSE--EEEECCCSCGGG-------------------SCHHHHH-T----TTCE
T ss_pred EEEEEEcCCcHHHHHHHHHHHHh--cCCCE--EEEEeeccchhc-------------------CCHhHHh-h----cCCe
Confidence 47899998654334556677764 46675 678998753210 0011121 1 1233
Q ss_pred EEeeeeceeeEEEEEEeccccCccCceeeceeecccCcccCCCCeeEEEEEEeCeEEEEEeecCcCCcc----hHHHHHH
Q 003171 635 RVGSRQLAGLLIAVWVRKNLKDYVGDVDVAAVPCGFGRAIGNKGAVGLRVRVYDRIMCFVNCHFAAHLE----AVNRRNA 710 (842)
Q Consensus 635 ~v~s~~l~g~~l~vf~r~~~~~~i~~v~~~~v~~G~~~~~gnKG~v~i~~~i~~~~~~Fv~~HLaa~~~----~~~~Rn~ 710 (842)
.+....-+.-.++||.|..+. .++. ++.+......+..+.+.+. .+.++|+|+.+... ..+.|.+
T Consensus 54 ~~~~~~~~~~G~ailsr~~~~----~~~~-----~~~~~~~~~~~~~~~~~~~--~~~v~~~h~~~~~~~~~~~~~~r~~ 122 (256)
T 2jc4_A 54 CVWSGQKTYNGVAIVSRSVPQ----DVHF-----GLPALPDDPQRRVIAATVS--GVRVINVYCVNGEALDSPKFKYKEQ 122 (256)
T ss_dssp EEEECCSSSCCEEEEESSCCE----EEEE-----SCTTSTTCCSCCEEEEEET--TEEEEEEECCCCCSTTSHHHHHHHH
T ss_pred EEECCCCcceEEEEEECCChH----Hhee-----cCCCCccCCcCcEEEEEeC--CEEEEEEEecCCCCCCcHhHHHHHH
Confidence 332222223345678887542 2221 2222111222223444553 79999999987643 4555666
Q ss_pred HHHHHHHh
Q 003171 711 DFDHVYRT 718 (842)
Q Consensus 711 ~~~~I~~~ 718 (842)
.++.|.+.
T Consensus 123 ~~~~l~~~ 130 (256)
T 2jc4_A 123 WFAALTEF 130 (256)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66666554
|
| >2ddr_A Sphingomyelin phosphodiesterase; DNAse I like folding, riken structural genomics/proteomics initiative, RSGI, structural genomics, hydrolase; 1.40A {Bacillus cereus} SCOP: d.151.1.3 PDB: 2dds_A 2ddt_A* 2uyr_X | Back alignment and structure |
|---|
Probab=97.77 E-value=0.00011 Score=78.44 Aligned_cols=46 Identities=20% Similarity=0.349 Sum_probs=37.8
Q ss_pred cCCCCeeEEEEEEeCeEEEEEeecCcCCc------chHHHHHHHHHHHHHhc
Q 003171 674 IGNKGAVGLRVRVYDRIMCFVNCHFAAHL------EAVNRRNADFDHVYRTM 719 (842)
Q Consensus 674 ~gnKG~v~i~~~i~~~~~~Fv~~HLaa~~------~~~~~Rn~~~~~I~~~l 719 (842)
..+||++.+++.+.+..+.++|+||.+.. .....|.++++.|.+.+
T Consensus 128 ~~~r~~~~~~i~~~g~~~~v~~~Hl~~~~~~~~~~~~~~~R~~q~~~l~~~i 179 (306)
T 2ddr_A 128 LSNKGFVYTKIKKNDRFVHVIGTHLQAEDSMCGKTSPASVRTNQLKEIQDFI 179 (306)
T ss_dssp CCCCEEEEEEEEETTEEEEEEEEECCCC-------CHHHHHHHHHHHHHHHH
T ss_pred hcCCCeEEEEEEeCCEEEEEEEECCCCCCCCcccccCHHHHHHHHHHHHHHH
Confidence 35789999999999999999999998873 35677888888887654
|
| >1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1 | Back alignment and structure |
|---|
Probab=97.77 E-value=0.001 Score=73.46 Aligned_cols=101 Identities=11% Similarity=0.010 Sum_probs=63.8
Q ss_pred ECCCCcEEEEeCCCeEEEEcCCCC---eeeeee------------cCCccEEEEEecCCEEEEEec---------CcEEE
Q 003171 427 TSIDGMIWTGGANGLLLQWDPNGN---RLQDFQ------------YLPFAVQCLCTFGSQIWVGYM---------NGIVQ 482 (842)
Q Consensus 427 ~s~dg~l~Sgs~DgtIrlWD~~g~---~l~~l~------------~H~~~V~sls~dG~~LasGs~---------DgtIr 482 (842)
...++.++..+. ++|.+.|..+. .+..+. .+......+.+||++++++.. ++.+.
T Consensus 219 ~~~~~~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ 297 (368)
T 1mda_H 219 ANYPGMLVWAVA-SSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTS 297 (368)
T ss_dssp ETTTTEEEECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEE
T ss_pred cccCCEEEEEcC-CEEEEEECCCCcceEEEEEEeccccccccccccCcceeeEEcCCCCEEEEEeccccCcccccCCCEE
Confidence 444555665556 78888888432 222221 111222467889998887643 23566
Q ss_pred EEeCC-CcccccccccccCEEEEE--eCCCE-EEEEc-CCCCeeeccccCCC
Q 003171 483 VLDLE-GNLLGGWVAHSSPVIKMA--VGAGY-IFTLA-NHGGIRGWNVTSPG 529 (842)
Q Consensus 483 lWD~~-g~~i~~l~gH~~~V~sla--~dg~~-l~S~S-~DgtIrvWd~~~~~ 529 (842)
++|++ .+.++++.... ..++|+ +||++ +++.. .+++|.++|+.+..
T Consensus 298 ViD~~t~~vv~~i~vg~-~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~k 348 (368)
T 1mda_H 298 SVTASVGQTSGPISNGH-DSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQ 348 (368)
T ss_dssp EEESSSCCEEECCEEEE-EECEEEECCSSSCEEEEEETTTTEEEEEESSSCE
T ss_pred EEECCCCeEEEEEECCC-CcceEEECCCCCEEEEEccCCCCeEEEEECCCCc
Confidence 99997 66777775544 356665 57874 55666 59999999987643
|
| >1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=97.74 E-value=0.0031 Score=75.40 Aligned_cols=72 Identities=21% Similarity=0.242 Sum_probs=49.2
Q ss_pred CeEEEEcC-CCCeeeeeecCCccEE--EEEecCCEEEEEecCcEEEEEeCC-CcccccccccccCE---EEEEeCCCEEE
Q 003171 440 GLLLQWDP-NGNRLQDFQYLPFAVQ--CLCTFGSQIWVGYMNGIVQVLDLE-GNLLGGWVAHSSPV---IKMAVGAGYIF 512 (842)
Q Consensus 440 gtIrlWD~-~g~~l~~l~~H~~~V~--sls~dG~~LasGs~DgtIrlWD~~-g~~i~~l~gH~~~V---~sla~dg~~l~ 512 (842)
|+|..||+ +|+.+-++.. ..++. .+..+|..++.|+.||.+++||++ |+.+.++....+.+ .....+|+..+
T Consensus 457 g~l~A~D~~tG~~~W~~~~-~~~~~~g~~~~~g~~v~~g~~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~~y~~~G~~~v 535 (677)
T 1kb0_A 457 GRLLAWDPVAQKAAWSVEH-VSPWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKLWEAPTGTGVVAAPSTYMVDGRQYV 535 (677)
T ss_dssp EEEEEEETTTTEEEEEEEE-SSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEE
T ss_pred cEEEEEeCCCCcEEeecCC-CCCCcCcceEeCCCEEEEECCCCcEEEEECCCCceeeeeeCCCCcccCCEEEEeCCEEEE
Confidence 78999999 7887666543 22233 356788899999999999999987 88877765443221 11235776544
|
| >1vyb_A ORF2 contains A reverse transcriptase domain; endonuclease, APE-1 type, retrotransposition, retrotransposon, transferase; 1.8A {Homo sapiens} SCOP: d.151.1.1 PDB: 2v0s_A 2v0r_A | Back alignment and structure |
|---|
Probab=97.72 E-value=0.00012 Score=74.67 Aligned_cols=113 Identities=13% Similarity=0.088 Sum_probs=62.5
Q ss_pred eEEEEEEEeCCCCCCc--ccccccccCCCCCceEEEEEeecccCccchhhhhhhhhhcccCCCcchhhHHHHHhhhccCC
Q 003171 553 KILAGTWNVGQGRASQ--DALISWLGSAASDVGIVVVGLQEVEMGAGFLAMSAAKETVGLEGSAVGHWWLDMIGKILDDG 630 (842)
Q Consensus 553 ~i~~~twNv~~~~~~~--~~l~~~l~~~~~~~di~viglQE~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~l~~~l~~~ 630 (842)
.+-+.|||+++..... +.+.++|.. .+||| |+|||+......+ . .+ .+ .+
T Consensus 7 ~lri~t~Nv~g~~~~~~~~~~~~~i~~--~~~DI--v~LQE~~~~~~~~-----------------~----~l--~~-~~ 58 (238)
T 1vyb_A 7 HITILTLNINGLNSAIKRHRLASWIKS--QDPSV--CCIQETHLTCRDT-----------------H----RL--KI-KG 58 (238)
T ss_dssp CEEEEEEECSCCCSHHHHHHHHHHHHH--HCCSE--EEEECCCCCTTSG-----------------G----GC--CC-TT
T ss_pred cceEEEEecccCCchhhHHHHHHHHHH--cCCCE--EEEecccCCCCCc-----------------h----hH--hh-CC
Confidence 3788999998765432 456777764 35664 6899986431100 0 00 11 13
Q ss_pred CceEEEeeeeceeeEEEEEEeccccCccCceeeceeecccCcccCCCCeeEEEEEEeCeEEEEEeecCcCCcc
Q 003171 631 STFERVGSRQLAGLLIAVWVRKNLKDYVGDVDVAAVPCGFGRAIGNKGAVGLRVRVYDRIMCFVNCHFAAHLE 703 (842)
Q Consensus 631 ~~y~~v~s~~l~g~~l~vf~r~~~~~~i~~v~~~~v~~G~~~~~gnKG~v~i~~~i~~~~~~Fv~~HLaa~~~ 703 (842)
..|.......-.+-.++||.|.++...+..+. .. ...-.+.+++.+.+..+.++|+|+.....
T Consensus 59 y~~~~~~~~~~~~~Gvail~r~~~~~~~~~~~-----~~-----~~~r~i~~~~~~~~~~~~v~~~y~p~~~~ 121 (238)
T 1vyb_A 59 WRKIYQANGKQKKAGVAILVSDKTDFKPTKIK-----RD-----KEGHYIMVKGSIQQEELTILNIYAPNTGA 121 (238)
T ss_dssp CCEEEEECCSSSSCCEEEEECTTCCCEEEEEE-----EC-----TTSSEEEEEEEETTEEEEEEEEECCSSSH
T ss_pred CCeEEEccCCCCCceEEEEEeCCCCcccccee-----Ec-----CCCcEEEEEEEeCCCcEEEEEEecCCCCc
Confidence 33332222111122557888887532222211 11 11225677788888999999999987653
|
| >3i41_A Beta-hemolysin; beta toxin, sphingomyelinase, toxin; 1.75A {Staphylococcus aureus} PDB: 3i46_A 3i48_A 3i5v_A* 3k55_A | Back alignment and structure |
|---|
Probab=97.71 E-value=7e-05 Score=81.01 Aligned_cols=46 Identities=13% Similarity=0.134 Sum_probs=39.8
Q ss_pred cCCCCeeEEEEEEeCeEEEEEeecCcCCc------chHHHHHHHHHHHHHhc
Q 003171 674 IGNKGAVGLRVRVYDRIMCFVNCHFAAHL------EAVNRRNADFDHVYRTM 719 (842)
Q Consensus 674 ~gnKG~v~i~~~i~~~~~~Fv~~HLaa~~------~~~~~Rn~~~~~I~~~l 719 (842)
..+||.+.+++.+.+..|.++|+||.+.. .....|.++...|.+.+
T Consensus 147 ~~~r~~~~~~i~~~g~~v~v~~~Hl~~~~~~~~~~~~~~~R~~q~~~l~~~i 198 (317)
T 3i41_A 147 DSNKGFVYTKIEKNGKNVHVIGTHTQSEDSRCGAGHDRKIRAEQMKEISDFV 198 (317)
T ss_dssp GBCCEEEEEEEEETTEEEEEEEEECCCCCSSSCTTHHHHHHHHHHHHHHHHH
T ss_pred ccCcceEEEEEEECCEEEEEEEECCCCCCCCCcccccHHHHHHHHHHHHHHH
Confidence 57899999999999999999999998864 34788999998887765
|
| >2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=97.59 E-value=0.0022 Score=69.53 Aligned_cols=84 Identities=17% Similarity=0.236 Sum_probs=49.0
Q ss_pred CcEEEEEEecCCCEE-Eee--CCCcEEEEeCCCccceeecCCCceeeeEEEEeeceeecccceeccceeeeecCCEEEEE
Q 003171 242 GPVLSLCISSYGDLW-SGS--EGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLL 318 (842)
Q Consensus 242 ~~V~slafs~dG~L~-SgS--~DgtIrvWd~~t~~~~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~la 318 (842)
..+..|+++++|+++ +.. .++.++||.+.++ ....+.... . .. + ..-..+..++
T Consensus 17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g-~~~~~p~~~-----------------~---~~-~-~~~~~p~gv~ 73 (343)
T 2qe8_A 17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQD-GLIPFPPQS-----------------G---NA-I-ITFDTVLGIK 73 (343)
T ss_dssp SCEEEEEECTTSCEEEEECGGGCCSCSEEEEETT-EEEESCCCC-----------------S---SC-C-CCCSCEEEEE
T ss_pred CCcceEEECCCCCEEEEeCCCCCCceEEEEECCC-CeecCCCcc-----------------c---Cc-c-cceeEeeEEE
Confidence 688999999999964 543 2344778877522 111110000 0 00 0 0123466778
Q ss_pred EcCCCCEEEEeC-------CCcEEEEEccCCcEEEEee
Q 003171 319 SDHSRAKVWSAG-------FLSFALWDARTRELLKVFN 349 (842)
Q Consensus 319 s~~~~~~v~s~s-------~~tI~lWD~~tg~~l~~l~ 349 (842)
+++++ +||.+. ...|.+||+.++++++++.
T Consensus 74 ~d~~g-~L~v~D~g~~~~~~~~i~~~d~~tg~~~~~~~ 110 (343)
T 2qe8_A 74 SDGNG-IVWMLDNGNQSKSVPKLVAWDTLNNQLSRVIY 110 (343)
T ss_dssp ECSSS-EEEEEECHHHHTSCCEEEEEETTTTEEEEEEE
T ss_pred EcCCC-cEEEEcCCCCcCCCCeEEEEECCCCeEEEEEE
Confidence 87765 455543 3579999999998777664
|
| >1wdu_A TRAS1 ORF2P; four-layered alpha/beta sandwich, RNA binding protein; 2.40A {Bombyx mori} SCOP: d.151.1.1 | Back alignment and structure |
|---|
Probab=97.52 E-value=0.00018 Score=74.24 Aligned_cols=120 Identities=13% Similarity=0.096 Sum_probs=68.8
Q ss_pred eEEEEEEEeCCCCCCcccccccccCCCCCceEEEEEeecccCccchhhhhhhhhhcccCCCcchhhHHHHHhhhccCCCc
Q 003171 553 KILAGTWNVGQGRASQDALISWLGSAASDVGIVVVGLQEVEMGAGFLAMSAAKETVGLEGSAVGHWWLDMIGKILDDGST 632 (842)
Q Consensus 553 ~i~~~twNv~~~~~~~~~l~~~l~~~~~~~di~viglQE~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~l~~~l~~~~~ 632 (842)
.+-+.|||+++.+...+.+.+||.. .++| ||+|||+...... .+.. . ..
T Consensus 19 ~lri~s~Nv~~~~~~~~~l~~~i~~--~~~D--Iv~lQE~~~~~~~-----------------------~~~~-~---~g 67 (245)
T 1wdu_A 19 PYRVLQANLQRKKLATAELAIEAAT--RKAA--IALIQEPYVGGAK-----------------------SMKG-F---RG 67 (245)
T ss_dssp CEEEEEEECTTCHHHHHHHHHHHHH--HTCS--EEEEESCCC-----------------------------CC-C---SS
T ss_pred ceeeeeeeccccHHHHHHHHHHHhh--cCCC--EEEEEcccccCCc-----------------------cccC-C---Cc
Confidence 3789999999765545567778874 4566 5789998642110 0000 1 12
Q ss_pred eEEEeee----eceeeEEEEEEec-cccCccCceeeceeecccCcccCCCCeeEEEEEEeCeEEEEEeecCcCCcchHHH
Q 003171 633 FERVGSR----QLAGLLIAVWVRK-NLKDYVGDVDVAAVPCGFGRAIGNKGAVGLRVRVYDRIMCFVNCHFAAHLEAVNR 707 (842)
Q Consensus 633 y~~v~s~----~l~g~~l~vf~r~-~~~~~i~~v~~~~v~~G~~~~~gnKG~v~i~~~i~~~~~~Fv~~HLaa~~~~~~~ 707 (842)
|...... .-.|+ .||.|+ .+. + . . +. ..-.+|.+.+.+...+..+.|+|+|+..... .+.
T Consensus 68 y~~~~~~~~~~~~~Gv--aIl~~~~~~~--~---~--~----~~-~~~~~~~~~~~i~~~~~~~~v~~vy~p~~~~-~~~ 132 (245)
T 1wdu_A 68 VRVFQSTAQGDGTVKA--AIAVFDHDLD--V---I--Q----YP-QLTTNNIVVVGIRTRAWEITLVSYYFEPDKP-IES 132 (245)
T ss_dssp CEEEECCCCTTCCCCE--EEEECCSSCE--E---E--E----CT-TTCCSSEEEEEEECSSCEEEEEEEECCTTSC-SHH
T ss_pred ceEeccccccCCCCCe--EEEEECCCcc--e---E--E----ec-ccccCCEEEEEEEcCCCcEEEEEEEeCCCCC-HHH
Confidence 3332211 12343 556654 331 1 1 0 11 1236788889998888899999999998753 344
Q ss_pred HHHHHHHHHHh
Q 003171 708 RNADFDHVYRT 718 (842)
Q Consensus 708 Rn~~~~~I~~~ 718 (842)
+.+++..+++.
T Consensus 133 ~~~~l~~~~~~ 143 (245)
T 1wdu_A 133 YLEQIKRVERK 143 (245)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHH
Confidence 55566666553
|
| >2voa_A AF_EXO, XTHA, exodeoxyribonuclease III; EXOIII, AP endonuclease, lyase; 1.7A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=97.49 E-value=0.00044 Score=71.45 Aligned_cols=37 Identities=27% Similarity=0.472 Sum_probs=26.0
Q ss_pred EEEEEEEeCCCCCCcccccccccCCCCCceEEEEEeecccC
Q 003171 554 ILAGTWNVGQGRASQDALISWLGSAASDVGIVVVGLQEVEM 594 (842)
Q Consensus 554 i~~~twNv~~~~~~~~~l~~~l~~~~~~~di~viglQE~~~ 594 (842)
+-+.|||+++.....+.+.++|.. .+||| |+|||+..
T Consensus 2 lrv~t~Nv~g~~~~~~~i~~~i~~--~~~Di--i~lQE~~~ 38 (257)
T 2voa_A 2 LKIATFNVNSIRSRLHIVIPWLKE--NKPDI--LCMQETKV 38 (257)
T ss_dssp EEEEEEECSCGGGTHHHHHHHHHH--HCCSE--EEEECCCC
T ss_pred eEEEEEecCChHHHHHHHHHHHhh--cCCCE--EEEEEeec
Confidence 568899998765444556667763 35664 68999965
|
| >2o3h_A DNA-(apurinic or apyrimidinic site) lyase; APE, endonuclease; 1.90A {Homo sapiens} PDB: 1bix_A 1dew_A* 1de8_B* 1de9_A* 2o3c_A | Back alignment and structure |
|---|
Probab=97.48 E-value=6.7e-05 Score=79.29 Aligned_cols=129 Identities=15% Similarity=0.163 Sum_probs=63.9
Q ss_pred eEEEEEEEeCCCCCCcc-cccccccCCCCCceEEEEEeecccCccchhhhhhhhhhcccCCCcchhhHHHHHhhhccCCC
Q 003171 553 KILAGTWNVGQGRASQD-ALISWLGSAASDVGIVVVGLQEVEMGAGFLAMSAAKETVGLEGSAVGHWWLDMIGKILDDGS 631 (842)
Q Consensus 553 ~i~~~twNv~~~~~~~~-~l~~~l~~~~~~~di~viglQE~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~l~~~l~~~~ 631 (842)
.+-+.|||+.+...... .+.++|.. .++| ||+|||+......+ . +.+.+.. +.
T Consensus 28 ~l~v~t~Ni~~~~~~~~~~i~~~i~~--~~~D--Ii~LQE~~~~~~~~-----------------~---~~l~~~~--gy 81 (285)
T 2o3h_A 28 TLKIASWNVDGLRAWIKKKGLDWVKE--EAPD--ILCLQETKCSENKL-----------------P---AELQELP--GL 81 (285)
T ss_dssp CEEEEEEECSSHHHHHHTTHHHHHHH--HCCS--EEEEECCCCCTTSC-----------------C---GGGGGCG--GG
T ss_pred ceEEEEEecccChhhhhhhHHHHHHh--cCCC--EEEEEEeecchhhc-----------------c---HHHHhcc--CC
Confidence 48899999986432212 26666653 4567 57899996532100 0 0111111 22
Q ss_pred ceEEEee-e-eceeeEEEEEEeccccCccCceeeceeecccCc-ccCCCCeeEEEEEEeCeEEEEEeecCcCCcc---hH
Q 003171 632 TFERVGS-R-QLAGLLIAVWVRKNLKDYVGDVDVAAVPCGFGR-AIGNKGAVGLRVRVYDRIMCFVNCHFAAHLE---AV 705 (842)
Q Consensus 632 ~y~~v~s-~-~l~g~~l~vf~r~~~~~~i~~v~~~~v~~G~~~-~~gnKG~v~i~~~i~~~~~~Fv~~HLaa~~~---~~ 705 (842)
.|..... . .-+.-.++||.|..... +.. ++.. .....|-+ +.+ ....+.++|+|+..... ..
T Consensus 82 ~~~~~~~~~~~~g~~Gvailsr~~~~~----~~~-----~~~~~~~~~~~r~-l~~--~~~~~~v~~~h~p~~~~~~~~~ 149 (285)
T 2o3h_A 82 SHQYWSAPSDKEGYSGVGLLSRQCPLK----VSY-----GIGDEEHDQEGRV-IVA--EFDSFVLVTAYVPNAGRGLVRL 149 (285)
T ss_dssp CEEEEECBC--CCSCCEEEEESSCCSE----EEE-----SCSCGGGSSBCCE-EEE--ECSSCEEEEEECCCCCGGGTTH
T ss_pred cEEEEecccCCcccceEEEEEccChHH----eee-----ccCCcccCCCCcE-EEE--EeCCEEEEEEEcCCCCCcchhH
Confidence 1222211 1 22212456788876431 211 1211 12234432 333 33589999999976643 34
Q ss_pred HHHHHHHHHHHHhc
Q 003171 706 NRRNADFDHVYRTM 719 (842)
Q Consensus 706 ~~Rn~~~~~I~~~l 719 (842)
+.|.+.++.|.+.+
T Consensus 150 ~~r~~~~~~l~~~l 163 (285)
T 2o3h_A 150 EYRQRWDEAFRKFL 163 (285)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 45666666665543
|
| >2jc5_A Exodeoxyribonuclease; hydrolase, repair phosphodiesterase, DNA repair, exonuclease, endonuclease; HET: BCN DIO GOL; 1.50A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=97.47 E-value=0.00015 Score=74.90 Aligned_cols=127 Identities=16% Similarity=0.172 Sum_probs=63.8
Q ss_pred EEEEEEEeCCCCCCcc-cccccccCCCCCceEEEEEeecccCccchhhhhhhhhhcccCCCcchhhHHHHHhhhccCCCc
Q 003171 554 ILAGTWNVGQGRASQD-ALISWLGSAASDVGIVVVGLQEVEMGAGFLAMSAAKETVGLEGSAVGHWWLDMIGKILDDGST 632 (842)
Q Consensus 554 i~~~twNv~~~~~~~~-~l~~~l~~~~~~~di~viglQE~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~l~~~l~~~~~ 632 (842)
+-+.|||+.+...... .+.++|.. .+||| |+|||+......+ . +.+.+.. +..
T Consensus 2 l~v~t~Ni~~~~~~~~~~i~~~i~~--~~~DI--i~LQE~~~~~~~~-----------------~---~~l~~~~--gy~ 55 (259)
T 2jc5_A 2 LKIISANVNGIRSAYKKGFYEYIAA--SGADI--VCVQELKAQEADL-----------------S---ADMKNPH--GMH 55 (259)
T ss_dssp EEEEEEECSSHHHHHHTTHHHHHHH--TTCSE--EEEECCCCCGGGC-----------------C---HHHHSGG--GCE
T ss_pred cEEEEEeeccHHHHHHhHHHHHHHh--cCCCE--EEEEEecchhhcc-----------------C---hhhcccc--CCe
Confidence 5688999986433222 36667663 46775 6789997532100 0 1121111 233
Q ss_pred eEEEeeeeceeeEEEEEEeccccCccCceeeceeecccCc-ccCCCCeeEEEEEEeCeEEEEEeecCcCCcch---HHHH
Q 003171 633 FERVGSRQLAGLLIAVWVRKNLKDYVGDVDVAAVPCGFGR-AIGNKGAVGLRVRVYDRIMCFVNCHFAAHLEA---VNRR 708 (842)
Q Consensus 633 y~~v~s~~l~g~~l~vf~r~~~~~~i~~v~~~~v~~G~~~-~~gnKG~v~i~~~i~~~~~~Fv~~HLaa~~~~---~~~R 708 (842)
|.......-+.-.++||.|..+. .+.. ++.. ....+|. .+.+.+ ..+.++|+||.+.... ...|
T Consensus 56 ~~~~~~~~~~~~G~ailsr~~~~----~~~~-----~~~~~~~~~~~r-~~~~~~--~~~~v~~~h~~~~~~~~~r~~~~ 123 (259)
T 2jc5_A 56 GHWHCAEKRGYSGVAVYSKRKPD----NVQI-----GMGIEEFDREGR-FVRCDF--GRLSVISLYLPSGSSAEERQQVK 123 (259)
T ss_dssp EEEECCSSTTCCCEEEEESSCCS----EEEE-----SCSCHHHHTTCC-EEEEEE--TTEEEEEEECCCCTTCHHHHHHH
T ss_pred EEEeccCCCCcceEEEEEecCce----eEEe-----CCCCCccCCCCe-EEEEEc--CCEEEEEEeccCCCCCcHHHHHH
Confidence 32221122222346778888653 2221 2211 1123443 344444 4799999999987543 2233
Q ss_pred HHHHHHHHHh
Q 003171 709 NADFDHVYRT 718 (842)
Q Consensus 709 n~~~~~I~~~ 718 (842)
.+.++.|.+.
T Consensus 124 ~~~~~~l~~~ 133 (259)
T 2jc5_A 124 YRFLDAFYPM 133 (259)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3445555444
|
| >1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1 | Back alignment and structure |
|---|
Probab=97.45 E-value=0.065 Score=55.27 Aligned_cols=104 Identities=9% Similarity=-0.042 Sum_probs=62.7
Q ss_pred EEEEECC-CCcEEEEeC---CCeEEEEcCCCCeeeeee-cCCccEEEEEe--cCCEEEEEec-CcEEEEEeCCCcccccc
Q 003171 423 EALTTSI-DGMIWTGGA---NGLLLQWDPNGNRLQDFQ-YLPFAVQCLCT--FGSQIWVGYM-NGIVQVLDLEGNLLGGW 494 (842)
Q Consensus 423 ~al~~s~-dg~l~Sgs~---DgtIrlWD~~g~~l~~l~-~H~~~V~sls~--dG~~LasGs~-DgtIrlWD~~g~~i~~l 494 (842)
..++++| +|.|+.+.. .+.|..++.+|+..+.+. ........++. ++.+|+.+.. .+.|.++|..+.....+
T Consensus 125 ~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~~~~~~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~ 204 (267)
T 1npe_A 125 RGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKV 204 (267)
T ss_dssp EEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEE
T ss_pred cEEEEeeCCCEEEEEECCCCCcEEEEEecCCCCcEEEEECCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCCceEEE
Confidence 4567777 466655543 367888888776555443 22234455654 5777776664 68999999986432222
Q ss_pred cccccCEEEEEeCCCEEEEEc-CCCCeeecccc
Q 003171 495 VAHSSPVIKMAVGAGYIFTLA-NHGGIRGWNVT 526 (842)
Q Consensus 495 ~gH~~~V~sla~dg~~l~S~S-~DgtIrvWd~~ 526 (842)
.........|+.+++.++.+. ..+.|.+.+..
T Consensus 205 ~~~~~~P~gi~~d~~~lyva~~~~~~v~~~d~~ 237 (267)
T 1npe_A 205 LEGLQYPFAVTSYGKNLYYTDWKTNSVIAMDLA 237 (267)
T ss_dssp EECCCSEEEEEEETTEEEEEETTTTEEEEEETT
T ss_pred ecCCCCceEEEEeCCEEEEEECCCCeEEEEeCC
Confidence 111223456777777777655 45677777654
|
| >3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus} | Back alignment and structure |
|---|
Probab=97.33 E-value=0.014 Score=65.64 Aligned_cols=116 Identities=4% Similarity=-0.084 Sum_probs=72.7
Q ss_pred CCCCEEEEEeCC-----CcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCCC-EEEee----------CCCcE
Q 003171 201 EASGVVWSGHRD-----GRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGS----------EGGGI 264 (842)
Q Consensus 201 pdg~~LaSGs~D-----GtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS----------~DgtI 264 (842)
++++.++..... ++|-+.|..+. +.+.++.--..+ .|++||||+ |+.+. .+++|
T Consensus 82 ~~~~~vyV~n~~~~~~~~~VsVID~~t~--------~vv~~I~vG~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~V 151 (426)
T 3c75_H 82 PDARRVYIQDPAHFAAITQQFVIDGSTG--------RILGMTDGGFLP--HPVAAEDGSFFAQASTVFERIARGKRTDYV 151 (426)
T ss_dssp CCTTEEEEEECTTTCSSEEEEEEETTTT--------EEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEE
T ss_pred CCCCEEEEECCCcCCCCCeEEEEECCCC--------EEEEEEECCCCC--ceEECCCCCEEEEEeccccccccCCCCCEE
Confidence 466777766653 68999999986 555555433446 799999998 66544 47799
Q ss_pred EEEeCCCccceeecCCC-ceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcCCCCEEEEeC---CCcEEEEEcc
Q 003171 265 KIWPWEAIEKALSLKPE-ERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG---FLSFALWDAR 340 (842)
Q Consensus 265 rvWd~~t~~~~l~~~~~-~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s---~~tI~lWD~~ 340 (842)
-++|..+.+..-++... ... ... ...-..+++++++.+++.+. .++|.+.|+.
T Consensus 152 sviD~~t~~vv~~I~v~g~~r-----------------~~~------g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~ 208 (426)
T 3c75_H 152 EVFDPVTFLPIADIELPDAPR-----------------FLV------GTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLE 208 (426)
T ss_dssp EEECTTTCCEEEEEEETTCCC-----------------CCB------SCCGGGSEECTTSSEEEEEECSSSCEEEEEETT
T ss_pred EEEECCCCcEEEEEECCCccc-----------------ccc------CCCcceEEEcCCCCEEEEEecCCCCeEEEEECC
Confidence 99999775422111100 000 000 00111355677788777764 3579999999
Q ss_pred CCcEEEEee
Q 003171 341 TRELLKVFN 349 (842)
Q Consensus 341 tg~~l~~l~ 349 (842)
+++.++++.
T Consensus 209 t~kvv~~I~ 217 (426)
T 3c75_H 209 GKTFDRMLD 217 (426)
T ss_dssp TTEEEEEEE
T ss_pred CCeEEEEEE
Confidence 999877654
|
| >1hd7_A DNA-(apurinic or apyrimidinic site) lyase; DNA repair, endonuclease, APE1, HAP1, REF-1; 1.95A {Homo sapiens} SCOP: d.151.1.1 PDB: 1e9n_A 3u8u_A 2isi_A | Back alignment and structure |
|---|
Probab=97.21 E-value=0.00026 Score=76.44 Aligned_cols=129 Identities=14% Similarity=0.146 Sum_probs=62.4
Q ss_pred eEEEEEEEeCCCCCCc-ccccccccCCCCCceEEEEEeecccCccchhhhhhhhhhcccCCCcchhhHHHHHhhhccCCC
Q 003171 553 KILAGTWNVGQGRASQ-DALISWLGSAASDVGIVVVGLQEVEMGAGFLAMSAAKETVGLEGSAVGHWWLDMIGKILDDGS 631 (842)
Q Consensus 553 ~i~~~twNv~~~~~~~-~~l~~~l~~~~~~~di~viglQE~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~l~~~l~~~~ 631 (842)
.+-+.|||+.+..... ..+.++|.. .++|| |+|||+...... ....+.+.. ++
T Consensus 61 ~lrv~t~Nv~g~~~~~~~~i~~~i~~--~~~DI--i~LQE~~~~~~~--------------------~~~~l~~~~--gy 114 (318)
T 1hd7_A 61 TLKICSWNVDGLRAWIKKKGLDWVKE--EAPDI--LCLQETKCSENK--------------------LPAELQELP--GL 114 (318)
T ss_dssp CEEEEEEECSSHHHHHHTTHHHHHHH--HCCSE--EEEECCCCCC---------------------------------CC
T ss_pred ceEEEEEecCcchhhhhhhHHHHHHh--hCCCE--EEEEEccCchhh--------------------ccHHHHhcC--CC
Confidence 4789999998643211 226666653 45665 789998653210 001111111 23
Q ss_pred ceEEEee-e-eceeeEEEEEEeccccCccCceeeceeecccCc-ccCCCCeeEEEEEEeCeEEEEEeecCcCCcc---hH
Q 003171 632 TFERVGS-R-QLAGLLIAVWVRKNLKDYVGDVDVAAVPCGFGR-AIGNKGAVGLRVRVYDRIMCFVNCHFAAHLE---AV 705 (842)
Q Consensus 632 ~y~~v~s-~-~l~g~~l~vf~r~~~~~~i~~v~~~~v~~G~~~-~~gnKG~v~i~~~i~~~~~~Fv~~HLaa~~~---~~ 705 (842)
.|..... . .-+.-.++||.|..+.. +.. ++.. .....|- .+...+ ..|.++|+|+..... ..
T Consensus 115 ~~~~~~~~~~~~g~~Gvailsr~~~~~----~~~-----~~~~~~~~~~~r-~l~~~~--~~~~v~~vh~p~~~~~~~~~ 182 (318)
T 1hd7_A 115 SHQYWSAPSDKEGYSGVGLLSRQCPLK----VSY-----GIGDEEHDQEGR-VIVAEF--DSFVLVTAYVPNAGRGLVRL 182 (318)
T ss_dssp CEEEEECC-----CCCEEEEESSCCSE----EEE-----SCSCGGGSSSSC-EEEEEC--SSCEEEEEECCCCCGGGTTH
T ss_pred ceEEEecCCCCCccceEEEEEcCCcee----EEe-----cCCCcccCCCCc-EEEEEc--CCEEEEEEEcCCCCCccccH
Confidence 2222221 1 22212456788876431 211 2211 1223443 233333 579999999976643 23
Q ss_pred HHHHHHHHHHHHhc
Q 003171 706 NRRNADFDHVYRTM 719 (842)
Q Consensus 706 ~~Rn~~~~~I~~~l 719 (842)
+.|.+.++.|.+.+
T Consensus 183 ~~r~~~~~~l~~~l 196 (318)
T 1hd7_A 183 EYRQRWDEAFRKFL 196 (318)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 45666666665543
|
| >2j63_A AP-endonuclease; base excision repair, lyase; 2.48A {Leishmania major} | Back alignment and structure |
|---|
Probab=97.19 E-value=0.00071 Score=76.99 Aligned_cols=38 Identities=29% Similarity=0.337 Sum_probs=26.3
Q ss_pred eEEEEEEEeCCCCCCc----ccccccccCCCCCceEEEEEeecccC
Q 003171 553 KILAGTWNVGQGRASQ----DALISWLGSAASDVGIVVVGLQEVEM 594 (842)
Q Consensus 553 ~i~~~twNv~~~~~~~----~~l~~~l~~~~~~~di~viglQE~~~ 594 (842)
.|-+.||||++..... +.+.+||.. .++| ||||||+..
T Consensus 149 ~LKI~TwNVnGl~~~~kr~~~~i~~~I~~--~~pD--IVcLQEtk~ 190 (467)
T 2j63_A 149 MYKFITWNVAGLRGLLKKNASALRAFMEA--EKPD--VLCLQETKL 190 (467)
T ss_dssp EEEEEEEECSCHHHHHHHCTTHHHHHHHH--HCCS--EEEEECCCC
T ss_pred CeEEEEEEcCCCcccccccHHHHHHHHHH--cCCC--EEEEEeccc
Confidence 4789999998743211 357778874 4567 578999865
|
| >3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A | Back alignment and structure |
|---|
Probab=97.13 E-value=0.028 Score=58.56 Aligned_cols=172 Identities=15% Similarity=0.138 Sum_probs=102.1
Q ss_pred CcEEEEEEecCCCEE-EeeCCC--cEEEEeCCCccceeecCCCceeeeEEEEeeceeecccceeccceeeeecCCEEEEE
Q 003171 242 GPVLSLCISSYGDLW-SGSEGG--GIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLL 318 (842)
Q Consensus 242 ~~V~slafs~dG~L~-SgS~Dg--tIrvWd~~t~~~~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~la 318 (842)
.-...|.|+ ++.|+ |++.+| .|++.|+++++...+..... ..-..-++
T Consensus 43 ~ftqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~----------------------------~~FgeGit 93 (262)
T 3nol_A 43 AFTEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGK----------------------------RYFGEGIS 93 (262)
T ss_dssp CEEEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCT----------------------------TCCEEEEE
T ss_pred cccceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecCC----------------------------ccceeEEE
Confidence 346788998 67775 777766 99999998865322211100 00011122
Q ss_pred EcCCCCEEEEeCC--CcEEEEEccCCcEEEEeecCCceEeeeecccCCCcccccceEEEEEecCCCCccceeeeEeecCc
Q 003171 319 SDHSRAKVWSAGF--LSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSR 396 (842)
Q Consensus 319 s~~~~~~v~s~s~--~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~ 396 (842)
. .+.+||...+ +.+.++|..|.+.++++...+.- +
T Consensus 94 ~--~g~~ly~ltw~~~~v~v~D~~t~~~~~ti~~~~eG----------------------------------~------- 130 (262)
T 3nol_A 94 D--WKDKIVGLTWKNGLGFVWNIRNLRQVRSFNYDGEG----------------------------------W------- 130 (262)
T ss_dssp E--ETTEEEEEESSSSEEEEEETTTCCEEEEEECSSCC----------------------------------C-------
T ss_pred E--eCCEEEEEEeeCCEEEEEECccCcEEEEEECCCCc----------------------------------e-------
Confidence 2 2557887774 57999999999988877532100 0
Q ss_pred ceEEecCCcEEEEeecCccccCCCceEEEEECCCC-cEEEEeCCCeEEEEcC-CCCeeeeeec--CCcc---EEEEEe-c
Q 003171 397 NAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDG-MIWTGGANGLLLQWDP-NGNRLQDFQY--LPFA---VQCLCT-F 468 (842)
Q Consensus 397 ~~~~g~~~~v~~v~~~g~~~~~~~~v~al~~s~dg-~l~Sgs~DgtIrlWD~-~g~~l~~l~~--H~~~---V~sls~-d 468 (842)
.++ +|| .|+....++.|.++|. +.+.+.++.. +..+ ++-+.. +
T Consensus 131 ---------------------------glt--~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~~ 181 (262)
T 3nol_A 131 ---------------------------GLT--HNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWVD 181 (262)
T ss_dssp ---------------------------CEE--ECSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEET
T ss_pred ---------------------------EEe--cCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEEC
Confidence 011 223 3665555677999999 6787777653 2223 344544 5
Q ss_pred CCEEEEEe-cCcEEEEEeCC-Cccccccccc------------ccCEEEEEeC--CCEEEEEc
Q 003171 469 GSQIWVGY-MNGIVQVLDLE-GNLLGGWVAH------------SSPVIKMAVG--AGYIFTLA 515 (842)
Q Consensus 469 G~~LasGs-~DgtIrlWD~~-g~~i~~l~gH------------~~~V~sla~d--g~~l~S~S 515 (842)
| +||+.. .+..|.+.|.+ |+.+..+... .+..+.||.| .+.++-.+
T Consensus 182 G-~lyan~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTG 243 (262)
T 3nol_A 182 G-EIFANVWQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTG 243 (262)
T ss_dssp T-EEEEEETTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEE
T ss_pred C-EEEEEEccCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEEC
Confidence 5 677666 58899999986 7655444321 1345778864 45555444
|
| >2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A* | Back alignment and structure |
|---|
Probab=97.13 E-value=0.059 Score=56.43 Aligned_cols=186 Identities=13% Similarity=0.118 Sum_probs=111.9
Q ss_pred cEEEEEEecCCCEEEee-C--CCcEEEEeCCCccceeecCCCceeeeEEEEeeceeecccceeccceeeeecCCEEEEEE
Q 003171 243 PVLSLCISSYGDLWSGS-E--GGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLS 319 (842)
Q Consensus 243 ~V~slafs~dG~L~SgS-~--DgtIrvWd~~t~~~~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las 319 (842)
....|+|++||.|+.++ . ++.|++.|+.+++-.-+.... . ......++.
T Consensus 22 f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~-----------------~-----------~~fgeGi~~ 73 (266)
T 2iwa_A 22 FTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMD-----------------D-----------SYFGEGLTL 73 (266)
T ss_dssp CEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECC-----------------T-----------TCCEEEEEE
T ss_pred CcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecC-----------------C-----------CcceEEEEE
Confidence 46799999998886443 2 689999999876532211100 0 001112333
Q ss_pred cCCCCEEEEeCC--CcEEEEEccCCcEEEEeecCCceEeeeecccCCCcccccceEEEEEecCCCCccceeeeEeecCcc
Q 003171 320 DHSRAKVWSAGF--LSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRN 397 (842)
Q Consensus 320 ~~~~~~v~s~s~--~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~ 397 (842)
. +.+||.+.+ +.+.++|..|.+.+.++... .. .
T Consensus 74 ~--g~~lyv~t~~~~~v~viD~~t~~v~~~i~~g-~~----------------------------~-------------- 108 (266)
T 2iwa_A 74 L--NEKLYQVVWLKNIGFIYDRRTLSNIKNFTHQ-MK----------------------------D-------------- 108 (266)
T ss_dssp E--TTEEEEEETTCSEEEEEETTTTEEEEEEECC-SS----------------------------S--------------
T ss_pred e--CCEEEEEEecCCEEEEEECCCCcEEEEEECC-CC----------------------------C--------------
Confidence 2 457777774 58999999999887766421 00 0
Q ss_pred eEEecCCcEEEEeecCccccCCCceEEEEECCCC-cEEEEeCCCeEEEEcC-CCCeeeeeec--CCc---cEEEEEecCC
Q 003171 398 AIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDG-MIWTGGANGLLLQWDP-NGNRLQDFQY--LPF---AVQCLCTFGS 470 (842)
Q Consensus 398 ~~~g~~~~v~~v~~~g~~~~~~~~v~al~~s~dg-~l~Sgs~DgtIrlWD~-~g~~l~~l~~--H~~---~V~sls~dG~ 470 (842)
+ ..+++|| +++.+..+++|.++|. +.+.++++.- +.. .++.+.+.+.
T Consensus 109 -------g-------------------~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~dg 162 (266)
T 2iwa_A 109 -------G-------------------WGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYING 162 (266)
T ss_dssp -------C-------------------CEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEETT
T ss_pred -------e-------------------EEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEECC
Confidence 0 0012233 3666666789999999 5677776652 112 2445544334
Q ss_pred EEEEEe-cCcEEEEEeCC-Cccccccccc-----------c--cCEEEEEe--CCCE-EEEEcCCCCeeeccccC
Q 003171 471 QIWVGY-MNGIVQVLDLE-GNLLGGWVAH-----------S--SPVIKMAV--GAGY-IFTLANHGGIRGWNVTS 527 (842)
Q Consensus 471 ~LasGs-~DgtIrlWD~~-g~~i~~l~gH-----------~--~~V~sla~--dg~~-l~S~S~DgtIrvWd~~~ 527 (842)
+||+.. .++.|.+-|++ ++.+..+... . ...+.|+. +++. ++++.....+.+-++..
T Consensus 163 ~lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~~ 237 (266)
T 2iwa_A 163 EVWANIWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLHL 237 (266)
T ss_dssp EEEEEETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEEE
T ss_pred EEEEecCCCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEec
Confidence 677666 47899999996 7765555321 1 34577875 4554 55777777777777654
|
| >2ei9_A Non-LTR retrotransposon R1BMKS ORF2 protein; four layered alpha beta sandwich, gene regulation; 2.00A {Bombyx mori} | Back alignment and structure |
|---|
Probab=96.92 E-value=0.00063 Score=70.50 Aligned_cols=36 Identities=25% Similarity=0.225 Sum_probs=27.3
Q ss_pred EEEEEEEeCCCCCCcccccccccCCCCCceEEEEEeeccc
Q 003171 554 ILAGTWNVGQGRASQDALISWLGSAASDVGIVVVGLQEVE 593 (842)
Q Consensus 554 i~~~twNv~~~~~~~~~l~~~l~~~~~~~di~viglQE~~ 593 (842)
+-+.||||++.+...+.|.+||.. .++|| ++|||..
T Consensus 8 mki~s~Nvn~~r~~~~~l~~~l~~--~~~DI--l~LQEt~ 43 (240)
T 2ei9_A 8 LRIGQINLGGAEDATRELPSIARD--LGLDI--VLVQEQY 43 (240)
T ss_dssp EEEEEEECTTCHHHHHTHHHHHHH--HTCSE--EEEESCC
T ss_pred ceEEEEecCccHHHHHHHHHHHHH--cCCCE--EEeecce
Confidence 678999999876655568889885 45665 5789974
|
| >1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=96.92 E-value=0.15 Score=60.60 Aligned_cols=77 Identities=25% Similarity=0.427 Sum_probs=50.8
Q ss_pred CCCeEEEEcC-CCCeeeeeecCCccE-EEEEecCCEEEEEecCcEEEEEeCC-Ccccccccccc----cCEEEEEeCCC-
Q 003171 438 ANGLLLQWDP-NGNRLQDFQYLPFAV-QCLCTFGSQIWVGYMNGIVQVLDLE-GNLLGGWVAHS----SPVIKMAVGAG- 509 (842)
Q Consensus 438 ~DgtIrlWD~-~g~~l~~l~~H~~~V-~sls~dG~~LasGs~DgtIrlWD~~-g~~i~~l~gH~----~~V~sla~dg~- 509 (842)
.+|.|.-||+ +|+.+-.+..+.... ..+...|..|+.|+.|+.|++||.+ |+.+..+.... .++.- ..+|+
T Consensus 436 ~~g~l~A~D~~tG~~~W~~~~~~~~~~~~~~t~gg~vf~g~~dg~l~a~d~~tG~~l~~~~~~~~~~~~p~~~-~~~G~~ 514 (668)
T 1kv9_A 436 VSGALLAWDPVKQKAAWKVPYPTHWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEALWQFEAQSGIVAAPMTF-ELAGRQ 514 (668)
T ss_dssp CEEEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEE-EETTEE
T ss_pred ccceEEEEeCCCCcEEEEccCCCCCcCceeEeCCCEEEEECCcccchhhhhhcChhheEecCCCCcccCceEE-EECCEE
Confidence 4588999999 787765554332221 2456688899999999999999987 88776665443 23322 35666
Q ss_pred EEEEEc
Q 003171 510 YIFTLA 515 (842)
Q Consensus 510 ~l~S~S 515 (842)
+++.++
T Consensus 515 yva~~~ 520 (668)
T 1kv9_A 515 YVAIMA 520 (668)
T ss_dssp EEEEEE
T ss_pred EEEEEe
Confidence 444333
|
| >3g91_A MTH0212, exodeoxyribonuclease; double-strand specific 3'-5' exonuclease, AP endonuclease; HET: PG4; 1.23A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fzi_A 3g0a_A 3g1k_A 3g2c_A 3g3c_A* 3g3y_A* 3g4t_A* 3g00_A 3g0r_A* 3g2d_A* 3g38_A 3g8v_A* 3ga6_A | Back alignment and structure |
|---|
Probab=96.87 E-value=0.00051 Score=71.72 Aligned_cols=38 Identities=26% Similarity=0.490 Sum_probs=25.5
Q ss_pred EEEEEEEeCCCCCCcc-cccccccCCCCCceEEEEEeecccCc
Q 003171 554 ILAGTWNVGQGRASQD-ALISWLGSAASDVGIVVVGLQEVEMG 595 (842)
Q Consensus 554 i~~~twNv~~~~~~~~-~l~~~l~~~~~~~di~viglQE~~~~ 595 (842)
+-+.|||+++...... .+.+||.. .++|| |+|||+...
T Consensus 4 l~i~s~Nv~g~~~~~~~~l~~~i~~--~~~DI--v~LQEt~~~ 42 (265)
T 3g91_A 4 LKIISWNVNGLRAVHRKGFLKWFME--EKPDI--LCLQEIKAA 42 (265)
T ss_dssp EEEEEEECSCHHHHHHHTHHHHHHH--HCCSE--EEEECCCSC
T ss_pred cEEEEEEcCCchhhhhhhHHHHHHh--cCCCE--EEEEecccc
Confidence 6788999987543222 47777764 35564 678998653
|
| >1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=96.77 E-value=0.038 Score=65.80 Aligned_cols=54 Identities=9% Similarity=0.051 Sum_probs=37.0
Q ss_pred CcEEEEEeCC-CcccccccccccCE-EEEEeCCCEEEEEcCCCCeeeccccCCCCC
Q 003171 478 NGIVQVLDLE-GNLLGGWVAHSSPV-IKMAVGAGYIFTLANHGGIRGWNVTSPGPL 531 (842)
Q Consensus 478 DgtIrlWD~~-g~~i~~l~gH~~~V-~sla~dg~~l~S~S~DgtIrvWd~~~~~~~ 531 (842)
+|.|..||+. |+.+=....+.... ..+...+..++.++.|+.++.||..+...+
T Consensus 437 ~g~l~A~D~~tG~~~W~~~~~~~~~~~~~~t~gg~vf~g~~dg~l~a~d~~tG~~l 492 (668)
T 1kv9_A 437 SGALLAWDPVKQKAAWKVPYPTHWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEAL 492 (668)
T ss_dssp EEEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEE
T ss_pred cceEEEEeCCCCcEEEEccCCCCCcCceeEeCCCEEEEECCcccchhhhhhcChhh
Confidence 5899999986 66543333222221 235567889999999999999998765443
|
| >2a40_B Deoxyribonuclease-1; WAVE, WH2, WAsp, actin, DNAse I, ARP2/3, structural protein; HET: HIC NAG ATP; 1.80A {Bos taurus} SCOP: d.151.1.1 PDB: 1dnk_A* 2a3z_B* 2a41_B* 2a42_B* 2d1k_B* 2dnj_A* 3cjc_D* 3dni_A* 1atn_D* | Back alignment and structure |
|---|
Probab=96.76 E-value=0.0026 Score=66.30 Aligned_cols=70 Identities=17% Similarity=0.054 Sum_probs=38.5
Q ss_pred CCceEEEeeeec----eeeEEEEEEeccccCccCceeeceeecc-c--CcccCCCCeeEEEEEEe---CeEEEEEeecCc
Q 003171 630 GSTFERVGSRQL----AGLLIAVWVRKNLKDYVGDVDVAAVPCG-F--GRAIGNKGAVGLRVRVY---DRIMCFVNCHFA 699 (842)
Q Consensus 630 ~~~y~~v~s~~l----~g~~l~vf~r~~~~~~i~~v~~~~v~~G-~--~~~~gnKG~v~i~~~i~---~~~~~Fv~~HLa 699 (842)
+..|..+.+... .+....++.|++....+ +.....-+ . +...-......+.|... +..|.++|+||.
T Consensus 60 ~~~y~~v~~~~~~~~~~~~~~~~ly~~~~v~~~---~~~~~~~~~~~~~~~~~~R~p~~~~~~~~~~~g~~~~vi~~Hl~ 136 (260)
T 2a40_B 60 PNTYHYVVSEPLGRNSYKERYLFLFRPNKVSVL---DTYQYDDGCESCGNDSFSREPAVVKFSSHSTKVKEFAIVALHSA 136 (260)
T ss_dssp TTSCEEEECCCBCSSSCCBEEEEEECTTTCEEE---EEEECCTTSTTTHHHHCSSCCEEEEEECTTSSSSEEEEEECCCC
T ss_pred CCCcEEEEcccCCCCCCcEEEEEEEcCceeEec---CceeccCCCcCCCCCceeeCCEEEEEEeCCCCCceEEEEEecCC
Confidence 345766665544 34566677777643221 11111111 0 01101356677788765 579999999999
Q ss_pred CCc
Q 003171 700 AHL 702 (842)
Q Consensus 700 a~~ 702 (842)
+..
T Consensus 137 ~~~ 139 (260)
T 2a40_B 137 PSD 139 (260)
T ss_dssp GGG
T ss_pred CCC
Confidence 653
|
| >3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=96.73 E-value=0.18 Score=51.86 Aligned_cols=177 Identities=13% Similarity=0.108 Sum_probs=104.1
Q ss_pred ccC--CcEEEEEEecCCCEE-EeeCC--CcEEEEeCCCccceeecCCCceeeeEEEEeeceeecccceeccceeeeecCC
Q 003171 239 AHR--GPVLSLCISSYGDLW-SGSEG--GGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSD 313 (842)
Q Consensus 239 gH~--~~V~slafs~dG~L~-SgS~D--gtIrvWd~~t~~~~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~ 313 (842)
.|. .-+..|.|++ +.|+ |.+.+ ..|++.|+++++...+..... . .-
T Consensus 16 phd~~~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~-----------------~-----------~f 66 (243)
T 3mbr_X 16 PHDTTAFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVPP-----------------P-----------YF 66 (243)
T ss_dssp ECCTTCCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCT-----------------T-----------CC
T ss_pred CCCCccccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCC-----------------C-----------cc
Confidence 553 4578999987 6775 66665 499999998865322211000 0 00
Q ss_pred EEEEEEcCCCCEEEEeCC--CcEEEEEccCCcEEEEeecCCceEeeeecccCCCcccccceEEEEEecCCCCccceeeeE
Q 003171 314 IKNLLSDHSRAKVWSAGF--LSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGF 391 (842)
Q Consensus 314 v~~las~~~~~~v~s~s~--~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~ 391 (842)
..-++. .+.+||...+ +.+.++|..|.+.++++...+.-
T Consensus 67 geGi~~--~~~~ly~ltw~~~~v~v~D~~tl~~~~ti~~~~~G------------------------------------- 107 (243)
T 3mbr_X 67 GAGIVA--WRDRLIQLTWRNHEGFVYDLATLTPRARFRYPGEG------------------------------------- 107 (243)
T ss_dssp EEEEEE--ETTEEEEEESSSSEEEEEETTTTEEEEEEECSSCC-------------------------------------
T ss_pred eeEEEE--eCCEEEEEEeeCCEEEEEECCcCcEEEEEeCCCCc-------------------------------------
Confidence 111222 2467777774 57999999999988877531100
Q ss_pred eecCcceEEecCCcEEEEeecCccccCCCceEEEEECCCCcEEEEeCCCeEEEEcC-CCCeeeeeec--CCc---cEEEE
Q 003171 392 FQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGMIWTGGANGLLLQWDP-NGNRLQDFQY--LPF---AVQCL 465 (842)
Q Consensus 392 ~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~al~~s~dg~l~Sgs~DgtIrlWD~-~g~~l~~l~~--H~~---~V~sl 465 (842)
..++. .++.|+.+..++.|.++|. +.+.++++.- +.. .++-+
T Consensus 108 -------------------------------wglt~-dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeL 155 (243)
T 3mbr_X 108 -------------------------------WALTS-DDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNEL 155 (243)
T ss_dssp -------------------------------CEEEE-CSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEE
T ss_pred -------------------------------eEEee-CCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccceee
Confidence 01111 1234666666788999999 6777777653 222 34455
Q ss_pred EecCCEEEEEe-cCcEEEEEeCC-Cccccccccc------------c-cCEEEEEeC--CCEEEEEc
Q 003171 466 CTFGSQIWVGY-MNGIVQVLDLE-GNLLGGWVAH------------S-SPVIKMAVG--AGYIFTLA 515 (842)
Q Consensus 466 s~dG~~LasGs-~DgtIrlWD~~-g~~i~~l~gH------------~-~~V~sla~d--g~~l~S~S 515 (842)
...+.+|++.. .+..|.+-|.+ |+.+..+... . +..+.||.| ++.++-.+
T Consensus 156 e~~~G~lyanvw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTG 222 (243)
T 3mbr_X 156 EWVNGELLANVWLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTG 222 (243)
T ss_dssp EEETTEEEEEETTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEE
T ss_pred EEeCCEEEEEECCCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEEC
Confidence 44444566665 57799999986 7654443311 1 345778864 45555443
|
| >1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A* | Back alignment and structure |
|---|
Probab=96.73 E-value=0.16 Score=59.51 Aligned_cols=66 Identities=11% Similarity=0.076 Sum_probs=41.7
Q ss_pred EEEEeCCCcEEEEECCCCccCCCCCcceeEEec--ccC--CcEEEEEEecCCCEEEee------CCCcEEEEeCCCccce
Q 003171 206 VWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQ--AHR--GPVLSLCISSYGDLWSGS------EGGGIKIWPWEAIEKA 275 (842)
Q Consensus 206 LaSGs~DGtIrlWdl~~g~~~~~~~~~~~~~l~--gH~--~~V~slafs~dG~L~SgS------~DgtIrvWd~~t~~~~ 275 (842)
|+.++.|+.+...|..+| +.+-+.. .+. ..+++--.-.+|.++.++ .++.|+.+|..+++..
T Consensus 124 V~v~t~dg~l~AlDa~TG--------~~~W~~~~~~~~~~~~~~ssP~v~~g~V~vg~~g~e~g~~g~v~A~D~~TG~~~ 195 (599)
T 1w6s_A 124 ILKTQLDGNVAALNAETG--------ETVWKVENSDIKVGSTLTIAPYVVKDKVIIGSSGAELGVRGYLTAYDVKTGEQV 195 (599)
T ss_dssp EEEECTTSEEEEEETTTC--------CEEEEEECCCGGGTCBCCSCCEEETTEEEECCBCGGGTCCCEEEEEETTTCCEE
T ss_pred EEEEcCCCEEEEEECCCC--------CEEEeecCCCCCccceeecCCEEECCEEEEEecccccCCCCeEEEEECCCCcEE
Confidence 888999999999999988 4432221 111 012211111256776655 3899999999988766
Q ss_pred eecC
Q 003171 276 LSLK 279 (842)
Q Consensus 276 l~~~ 279 (842)
.++.
T Consensus 196 W~~~ 199 (599)
T 1w6s_A 196 WRAY 199 (599)
T ss_dssp EEEE
T ss_pred EEEc
Confidence 5543
|
| >2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A* | Back alignment and structure |
|---|
Probab=96.72 E-value=0.11 Score=60.73 Aligned_cols=68 Identities=7% Similarity=0.089 Sum_probs=43.6
Q ss_pred CCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEe--cccCC--cEEEEEEecCCCEEEeeC------CCcEEEEeCCCc
Q 003171 203 SGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSW--QAHRG--PVLSLCISSYGDLWSGSE------GGGIKIWPWEAI 272 (842)
Q Consensus 203 g~~LaSGs~DGtIrlWdl~~g~~~~~~~~~~~~~l--~gH~~--~V~slafs~dG~L~SgS~------DgtIrvWd~~t~ 272 (842)
++.|+.++.|+.+..+|..+| +.+-+. .+|.. .+++--.-.++.++.++. ++.|..+|..++
T Consensus 115 ~~~v~v~~~dg~l~alD~~tG--------~~~W~~~~~~~~~~~~~~~~P~v~~g~v~vg~~~~~~~~~g~v~a~D~~tG 186 (571)
T 2ad6_A 115 AGQIVKKQANGHLLALDAKTG--------KINWEVEVCDPKVGSTLTQAPFVAKDTVLMGCSGAELGVRGAVNAFDLKTG 186 (571)
T ss_dssp TTEEEEECTTSEEEEEETTTC--------CEEEEEECCCGGGTCBCCSCCEEETTEEEEECBCGGGTCCCEEEEEETTTC
T ss_pred CCEEEEEeCCCEEEEEECCCC--------CEEEEecCCCCCccceeccCCEEECCEEEEEecCCccCCCCEEEEEECCCC
Confidence 578889999999999999988 443322 22211 122111112567766654 799999999988
Q ss_pred cceeec
Q 003171 273 EKALSL 278 (842)
Q Consensus 273 ~~~l~~ 278 (842)
+...++
T Consensus 187 ~~~W~~ 192 (571)
T 2ad6_A 187 ELKWRA 192 (571)
T ss_dssp CEEEEE
T ss_pred cEEEEE
Confidence 766554
|
| >2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A* | Back alignment and structure |
|---|
Probab=96.55 E-value=0.024 Score=59.42 Aligned_cols=109 Identities=7% Similarity=0.017 Sum_probs=79.1
Q ss_pred eEEEEECCCCcEEEEeC---CCeEEEEcC-CCCeeeeeecCC-ccEEEEEecCCEEEEEec-CcEEEEEeCC-Ccccccc
Q 003171 422 TEALTTSIDGMIWTGGA---NGLLLQWDP-NGNRLQDFQYLP-FAVQCLCTFGSQIWVGYM-NGIVQVLDLE-GNLLGGW 494 (842)
Q Consensus 422 v~al~~s~dg~l~Sgs~---DgtIrlWD~-~g~~l~~l~~H~-~~V~sls~dG~~LasGs~-DgtIrlWD~~-g~~i~~l 494 (842)
...+++++||.|+.++. +++|++.|+ +|+.++++.... .....++++|++||.+.. +++|.++|.+ .+.+.++
T Consensus 23 ~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~g~~lyv~t~~~~~v~viD~~t~~v~~~i 102 (266)
T 2iwa_A 23 TQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLLNEKLYQVVWLKNIGFIYDRRTLSNIKNF 102 (266)
T ss_dssp EEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEEETTCSEEEEEETTTTEEEEEE
T ss_pred cccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEeCCEEEEEEecCCEEEEEECCCCcEEEEE
Confidence 45688999889887664 578999999 799888875322 233467788988888774 8899999987 5667766
Q ss_pred cccccCEEEEEeCCCEEEEEcCCCCeeeccccCCCC
Q 003171 495 VAHSSPVIKMAVGAGYIFTLANHGGIRGWNVTSPGP 530 (842)
Q Consensus 495 ~gH~~~V~sla~dg~~l~S~S~DgtIrvWd~~~~~~ 530 (842)
..-...=+.+++||+.++.+..++.|.+.|..+...
T Consensus 103 ~~g~~~g~glt~Dg~~l~vs~gs~~l~viD~~t~~v 138 (266)
T 2iwa_A 103 THQMKDGWGLATDGKILYGSDGTSILYEIDPHTFKL 138 (266)
T ss_dssp ECCSSSCCEEEECSSSEEEECSSSEEEEECTTTCCE
T ss_pred ECCCCCeEEEEECCCEEEEECCCCeEEEEECCCCcE
Confidence 421122256888988877666788899999766443
|
| >2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A* | Back alignment and structure |
|---|
Probab=96.53 E-value=0.15 Score=54.22 Aligned_cols=103 Identities=13% Similarity=0.072 Sum_probs=62.9
Q ss_pred eEEEEECCCCc-EEEE-eCCCeEEEEcCCCCe---eeeeecCCccEEEEEec--CCEEEEEec-----------CcEEEE
Q 003171 422 TEALTTSIDGM-IWTG-GANGLLLQWDPNGNR---LQDFQYLPFAVQCLCTF--GSQIWVGYM-----------NGIVQV 483 (842)
Q Consensus 422 v~al~~s~dg~-l~Sg-s~DgtIrlWD~~g~~---l~~l~~H~~~V~sls~d--G~~LasGs~-----------DgtIrl 483 (842)
...+++++||. |+.+ +.++.|.++++.+.. .+.+..... ...++.| |. ||++.. .+.|..
T Consensus 187 p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~~g-P~gi~~d~~G~-l~va~~~~~~~~~~~~~~~~v~~ 264 (322)
T 2fp8_A 187 PGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIPN-PGNIKRNADGH-FWVSSSEELDGNMHGRVDPKGIK 264 (322)
T ss_dssp CCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEECSS-EEEEEECTTSC-EEEEEEEETTSSTTSCEEEEEEE
T ss_pred CcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEeCCC-CCCeEECCCCC-EEEEecCcccccccCCCccEEEE
Confidence 34688999986 7665 456789999986421 222221122 4556654 55 555543 367999
Q ss_pred EeCCCcccccccccc----cCEEEEEe-CCCEEEEEcCCCCeeecccc
Q 003171 484 LDLEGNLLGGWVAHS----SPVIKMAV-GAGYIFTLANHGGIRGWNVT 526 (842)
Q Consensus 484 WD~~g~~i~~l~gH~----~~V~sla~-dg~~l~S~S~DgtIrvWd~~ 526 (842)
+|.+|+.+..+.... ..+.+++. +++..++....+.|.++++.
T Consensus 265 ~d~~G~~~~~~~~~~g~~~~~~~~~~~~~g~L~v~~~~~~~i~~~~~~ 312 (322)
T 2fp8_A 265 FDEFGNILEVIPLPPPFAGEHFEQIQEHDGLLYIGTLFHGSVGILVYD 312 (322)
T ss_dssp ECTTSCEEEEEECCTTTTTSCCCEEEEETTEEEEECSSCSEEEEEEC-
T ss_pred ECCCCCEEEEEECCCCCccccceEEEEeCCEEEEeecCCCceEEEecc
Confidence 998888776665432 34566654 44444555567788888754
|
| >3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=96.49 E-value=1.2 Score=48.96 Aligned_cols=99 Identities=13% Similarity=0.079 Sum_probs=61.3
Q ss_pred EEEEecCCCEEEEeCCCCccccccccccccCCCCCCCCCCeeeeeecCCCeEEEEEcCC-CCEEEEEeCCCcEEEEECCC
Q 003171 144 QLWAGGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEA-SGVVWSGHRDGRIMCWKMNA 222 (842)
Q Consensus 144 ~l~~~~D~~vrvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~V~~la~dpd-g~~LaSGs~DGtIrlWdl~~ 222 (842)
.|+.+..+.|+..++...... ..+.+...+..+++++. +.+.|+-...+.|..+++++
T Consensus 89 ~l~~~~~~~I~~i~~~~~~~~---------------------~~~~~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g 147 (386)
T 3v65_B 89 VLLFANRIDIRQVLPHRSEYT---------------------LLLNNLENAIALDFHHRRELVFWSDVTLDRILRANLNG 147 (386)
T ss_dssp EEEEECBSCEEEECTTSCCCE---------------------EEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred eeEeecCccceeeccCCCcEE---------------------EEecCCCccEEEEEecCCCeEEEEeCCCCcEEEEecCC
Confidence 455566778888887542111 11112345788999975 55666766778999999987
Q ss_pred CccCCCCCcceeEEecccCCcEEEEEEecC-CCE-EEeeCCCcEEEEeCCC
Q 003171 223 RLLDSDDGFGEVLSWQAHRGPVLSLCISSY-GDL-WSGSEGGGIKIWPWEA 271 (842)
Q Consensus 223 g~~~~~~~~~~~~~l~gH~~~V~slafs~d-G~L-~SgS~DgtIrvWd~~t 271 (842)
+ .....+.........|++++. |.| |+-+..+.|.+.++++
T Consensus 148 ~--------~~~~~~~~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg 190 (386)
T 3v65_B 148 S--------NVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDG 190 (386)
T ss_dssp C--------CEEEEECSSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTS
T ss_pred C--------CcEEEEeCCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCC
Confidence 5 211112222234467899975 455 5766777888877754
|
| >3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=96.48 E-value=0.17 Score=52.68 Aligned_cols=158 Identities=11% Similarity=0.131 Sum_probs=92.5
Q ss_pred ceeEEEEecCCEEEEe--cCCCEEEEeCCCCccccccccccccCCCCCCCCCCeeeeeecCCCeEEEEEcCCCCEEEE-E
Q 003171 133 CFLRTIVCTEEQLWAG--GENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWS-G 209 (842)
Q Consensus 133 ~~~~~l~~~~~~l~~~--~D~~vrvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~V~~la~dpdg~~LaS-G 209 (842)
.|-+-|..+++.||.+ .++.|++.|++++..... . .+..+|- -.++++ ++.||. .
T Consensus 55 ~ftqGL~~~~~~Ly~stG~~g~v~~iD~~Tgkv~~~---------~--l~~~~Fg---------eGit~~--g~~Ly~lt 112 (268)
T 3nok_A 55 AFTQGLVFHQGHFFESTGHQGTLRQLSLESAQPVWM---------E--RLGNIFA---------EGLASD--GERLYQLT 112 (268)
T ss_dssp CCEEEEEEETTEEEEEETTTTEEEECCSSCSSCSEE---------E--ECTTCCE---------EEEEEC--SSCEEEEE
T ss_pred cccceEEEECCEEEEEcCCCCEEEEEECCCCcEEeE---------E--CCCCcce---------eEEEEe--CCEEEEEE
Confidence 4667888888999984 467899999988654321 0 1111121 124443 444444 4
Q ss_pred eCCCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCCC-EEEeeCCCcEEEEeCCCccceeecCCCceeeeEE
Q 003171 210 HRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEKALSLKPEERHTAAL 288 (842)
Q Consensus 210 s~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~~t~~~~l~~~~~~~~~~~l 288 (842)
..++.+.++|.++. +.+.++.--.. ...+++||+ |+.+..++.|.++|.++.+..-+...
T Consensus 113 w~~~~v~V~D~~Tl--------~~~~ti~~~~e---GwGLt~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V-------- 173 (268)
T 3nok_A 113 WTEGLLFTWSGMPP--------QRERTTRYSGE---GWGLCYWNGKLVRSDGGTMLTFHEPDGFALVGAVQV-------- 173 (268)
T ss_dssp SSSCEEEEEETTTT--------EEEEEEECSSC---CCCEEEETTEEEEECSSSEEEEECTTTCCEEEEEEC--------
T ss_pred ccCCEEEEEECCcC--------cEEEEEeCCCc---eeEEecCCCEEEEECCCCEEEEEcCCCCeEEEEEEe--------
Confidence 57889999999986 56666542111 123345665 77655688999999877432211100
Q ss_pred EEeeceeecccceeccceeeeecCCEEEEEEcCCCCEEEEeCC--CcEEEEEccCCcEEEEee
Q 003171 289 IVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGF--LSFALWDARTRELLKVFN 349 (842)
Q Consensus 289 ~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s~--~tI~lWD~~tg~~l~~l~ 349 (842)
...+. +.....-+... +++||...+ ..|.+-|.+||+++..+.
T Consensus 174 -------------~~~g~---~v~~lNeLe~~--dG~lyanvw~s~~I~vIDp~TG~V~~~Id 218 (268)
T 3nok_A 174 -------------KLRGQ---PVELINELECA--NGVIYANIWHSSDVLEIDPATGTVVGVID 218 (268)
T ss_dssp -------------EETTE---ECCCEEEEEEE--TTEEEEEETTCSEEEEECTTTCBEEEEEE
T ss_pred -------------CCCCc---ccccccccEEe--CCEEEEEECCCCeEEEEeCCCCcEEEEEE
Confidence 00000 01122223333 336887664 579999999999988764
|
| >3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A | Back alignment and structure |
|---|
Probab=96.34 E-value=0.15 Score=53.10 Aligned_cols=160 Identities=9% Similarity=0.124 Sum_probs=92.9
Q ss_pred ceeEEEEecCCEEEEec--CC--CEEEEeCCCCccccccccccccCCCCCCCCCCeeeeeecCCCeEEEEEcCCCCEEEE
Q 003171 133 CFLRTIVCTEEQLWAGG--EN--GLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWS 208 (842)
Q Consensus 133 ~~~~~l~~~~~~l~~~~--D~--~vrvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~V~~la~dpdg~~LaS 208 (842)
.|-+-|..+++.||.|+ ++ .|++.|++++..... -..+..+|- -.+++ +++.||.
T Consensus 43 ~ftqGL~~~~~~LyestG~~g~S~v~~vD~~Tgkv~~~----------~~l~~~~Fg---------eGit~--~g~~ly~ 101 (262)
T 3nol_A 43 AFTEGFFYRNGYFYESTGLNGRSSIRKVDIESGKTLQQ----------IELGKRYFG---------EGISD--WKDKIVG 101 (262)
T ss_dssp CEEEEEEEETTEEEEEEEETTEEEEEEECTTTCCEEEE----------EECCTTCCE---------EEEEE--ETTEEEE
T ss_pred cccceEEEECCEEEEECCCCCCceEEEEECCCCcEEEE----------EecCCccce---------eEEEE--eCCEEEE
Confidence 46777887877999854 43 899999988654321 000111121 11333 3556666
Q ss_pred Ee-CCCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCCC-EEEeeCCCcEEEEeCCCccceeecCCCceeee
Q 003171 209 GH-RDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEKALSLKPEERHTA 286 (842)
Q Consensus 209 Gs-~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~~t~~~~l~~~~~~~~~~ 286 (842)
.. .++.+.++|.++. +.+.++.--. ....+++||+ |+....++.|.++|.++.+..-+...
T Consensus 102 ltw~~~~v~v~D~~t~--------~~~~ti~~~~---eG~glt~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V------ 164 (262)
T 3nol_A 102 LTWKNGLGFVWNIRNL--------RQVRSFNYDG---EGWGLTHNDQYLIMSDGTPVLRFLDPESLTPVRTITV------ 164 (262)
T ss_dssp EESSSSEEEEEETTTC--------CEEEEEECSS---CCCCEEECSSCEEECCSSSEEEEECTTTCSEEEEEEC------
T ss_pred EEeeCCEEEEEECccC--------cEEEEEECCC---CceEEecCCCEEEEECCCCeEEEEcCCCCeEEEEEEe------
Confidence 65 5789999999886 5565554211 2234456675 77655577899999877432111100
Q ss_pred EEEEeeceeecccceeccceeeeecCCEEEEEEcCCCCEEEEeCC--CcEEEEEccCCcEEEEeec
Q 003171 287 ALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGF--LSFALWDARTRELLKVFNI 350 (842)
Q Consensus 287 ~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s~--~tI~lWD~~tg~~l~~l~~ 350 (842)
...+. +.....-+... +++||...+ ..|.+.|.+||+++.++..
T Consensus 165 ---------------~~~g~---~~~~lNELe~~--~G~lyan~w~~~~I~vIDp~tG~V~~~Id~ 210 (262)
T 3nol_A 165 ---------------TAHGE---ELPELNELEWV--DGEIFANVWQTNKIVRIDPETGKVTGIIDL 210 (262)
T ss_dssp ---------------EETTE---ECCCEEEEEEE--TTEEEEEETTSSEEEEECTTTCBEEEEEEC
T ss_pred ---------------ccCCc---cccccceeEEE--CCEEEEEEccCCeEEEEECCCCcEEEEEEC
Confidence 00000 01112223333 347887764 5799999999999887753
|
| >2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3 | Back alignment and structure |
|---|
Probab=96.34 E-value=1.3 Score=46.46 Aligned_cols=70 Identities=14% Similarity=0.146 Sum_probs=47.4
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCCCEEEeeC--CC-cEEEEe
Q 003171 192 SSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGDLWSGSE--GG-GIKIWP 268 (842)
Q Consensus 192 ~~V~~la~dpdg~~LaSGs~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~L~SgS~--Dg-tIrvWd 268 (842)
.....++++++|+++++-..++.|..||.++. ....+. -.+...+|+++++|+|+.+.. ++ .|..++
T Consensus 32 ~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~---------~~~~~~-~~~~p~gia~~~dG~l~vad~~~~~~~v~~~d 101 (306)
T 2p4o_A 32 TFLENLASAPDGTIFVTNHEVGEIVSITPDGN---------QQIHAT-VEGKVSGLAFTSNGDLVATGWNADSIPVVSLV 101 (306)
T ss_dssp CCEEEEEECTTSCEEEEETTTTEEEEECTTCC---------EEEEEE-CSSEEEEEEECTTSCEEEEEECTTSCEEEEEE
T ss_pred CCcceEEECCCCCEEEEeCCCCeEEEECCCCc---------eEEEEe-CCCCceeEEEcCCCcEEEEeccCCcceEEEEc
Confidence 35667999999998888778899999988763 222222 234688999999999765542 22 344445
Q ss_pred CCC
Q 003171 269 WEA 271 (842)
Q Consensus 269 ~~t 271 (842)
..+
T Consensus 102 ~~~ 104 (306)
T 2p4o_A 102 KSD 104 (306)
T ss_dssp CTT
T ss_pred CCC
Confidence 444
|
| >1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 | Back alignment and structure |
|---|
Probab=96.28 E-value=1.5 Score=46.51 Aligned_cols=102 Identities=13% Similarity=0.133 Sum_probs=60.3
Q ss_pred EEEecCCCEEEEeCCCCccccccccccccCCCCCCCCCCeeeeeecCCCeEEEEEcCCC-CEEEEEeCCCcEEEEECCCC
Q 003171 145 LWAGGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEAS-GVVWSGHRDGRIMCWKMNAR 223 (842)
Q Consensus 145 l~~~~D~~vrvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~V~~la~dpdg-~~LaSGs~DGtIrlWdl~~g 223 (842)
|+.+..+.|++.|++..... ..+.....+..+++++++ .+.|+-...+.|..+++++.
T Consensus 4 ll~~~~~~I~~i~~~~~~~~---------------------~~~~~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~ 62 (316)
T 1ijq_A 4 LFFTNRHEVRKMTLDRSEYT---------------------SLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRA 62 (316)
T ss_dssp EEEECBSSEEEEETTSCCCE---------------------EEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC---
T ss_pred EEEECCCeEEEEECCCcceE---------------------ehhcCCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCC
Confidence 55566778999998753211 011113356789999865 56667667789999998761
Q ss_pred ccCCCCCcceeEEecccCCcEEEEEEecC-CCE-EEeeCCCcEEEEeCCC
Q 003171 224 LLDSDDGFGEVLSWQAHRGPVLSLCISSY-GDL-WSGSEGGGIKIWPWEA 271 (842)
Q Consensus 224 ~~~~~~~~~~~~~l~gH~~~V~slafs~d-G~L-~SgS~DgtIrvWd~~t 271 (842)
. ........+...-....+|++++. +.| |+-...+.|.+.++++
T Consensus 63 ~----~~~~~~~~~~~~~~~p~glavd~~~~~ly~~d~~~~~I~~~~~~g 108 (316)
T 1ijq_A 63 H----GVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKG 108 (316)
T ss_dssp ---------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred C----CCcccEEEEeCCCCCcCEEEEeecCCeEEEEECCCCEEEEEeCCC
Confidence 0 000111112222234578999974 456 5667788999988764
|
| >3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B | Back alignment and structure |
|---|
Probab=96.27 E-value=1.5 Score=46.65 Aligned_cols=102 Identities=14% Similarity=0.072 Sum_probs=63.2
Q ss_pred EEEEecCCCEEEEeCCCCccccccccccccCCCCCCCCCCeeeeeecCCCeEEEEEcCC-CCEEEEEeCCCcEEEEECCC
Q 003171 144 QLWAGGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEA-SGVVWSGHRDGRIMCWKMNA 222 (842)
Q Consensus 144 ~l~~~~D~~vrvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~V~~la~dpd-g~~LaSGs~DGtIrlWdl~~ 222 (842)
.|+.+....|+..|++.... +...+. .. ...+.+|++++. +.+.|+-...+.|..+++++
T Consensus 6 ~ll~~~~~~I~~i~l~~~~~---------------~~~~~~-~~---~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g 66 (318)
T 3sov_A 6 LLLYANRRDLRLVDATNGKE---------------NATIVV-GG---LEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNK 66 (318)
T ss_dssp EEEEECEEEEEEEETTCTTS---------------CCEEEE-EE---EEEEEEEEEEGGGTEEEEEETTTTEEEEEETTS
T ss_pred EEEEEccCeEEEEECCCCce---------------EEEEEe-cC---CCccEEEEEEeCCCEEEEEECCCCcEEEEEccC
Confidence 35556667899999865321 001111 11 225678999984 56777777788999999887
Q ss_pred CccCCCCCcceeEEecccCCcEEEEEEecC-CCE-EEeeCCCcEEEEeCCC
Q 003171 223 RLLDSDDGFGEVLSWQAHRGPVLSLCISSY-GDL-WSGSEGGGIKIWPWEA 271 (842)
Q Consensus 223 g~~~~~~~~~~~~~l~gH~~~V~slafs~d-G~L-~SgS~DgtIrvWd~~t 271 (842)
+. .....+..--....+|++++. |.| |+-+..+.|.+.++++
T Consensus 67 ~~-------~~~~~~~~~l~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG 110 (318)
T 3sov_A 67 TE-------SVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDG 110 (318)
T ss_dssp SS-------CCCEEEEECCSCCCEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred CC-------ceEEEEcCCCCCccEEEEEcCCCeEEEEECCCCEEEEEECCC
Confidence 51 111111122234568999974 555 5767778999998865
|
| >2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=96.26 E-value=0.9 Score=50.95 Aligned_cols=68 Identities=13% Similarity=0.157 Sum_probs=48.4
Q ss_pred EEEEcCCCCEEEEEeCC------CcEEEEECCCCccCCCCCcceeEEecc--cC-CcEEEEEEecCCC-EEEee------
Q 003171 196 CMVGDEASGVVWSGHRD------GRIMCWKMNARLLDSDDGFGEVLSWQA--HR-GPVLSLCISSYGD-LWSGS------ 259 (842)
Q Consensus 196 ~la~dpdg~~LaSGs~D------GtIrlWdl~~g~~~~~~~~~~~~~l~g--H~-~~V~slafs~dG~-L~SgS------ 259 (842)
-+.+.|+| +++|...+ |.|-+.|.++. +.+.+|.- +. .--..+.|+|+++ ++|..
T Consensus 142 ~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~~T~--------~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~ 212 (462)
T 2ece_A 142 TVHCGPDA-IYISALGNEEGEGPGGILMLDHYSF--------EPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNT 212 (462)
T ss_dssp EEEECSSC-EEEEEEEETTSCSCCEEEEECTTTC--------CEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHH
T ss_pred ceeECCCe-EEEEcCCCcCCCCCCeEEEEECCCC--------eEEEEEccCCCCccccceEEECCCCCEEEEccCcCccc
Confidence 35677888 77776666 78999999886 56667752 22 1234578899998 45554
Q ss_pred -------------CCCcEEEEeCCCc
Q 003171 260 -------------EGGGIKIWPWEAI 272 (842)
Q Consensus 260 -------------~DgtIrvWd~~t~ 272 (842)
.+.+|.+||+++.
T Consensus 213 ~~~g~~~~~~~~~~~d~V~v~D~~~~ 238 (462)
T 2ece_A 213 IEDGLKLEHLKDRYGNRIHFWDLRKR 238 (462)
T ss_dssp HTTCCCTTTHHHHSCCEEEEEETTTT
T ss_pred cccccchhhhhhccCCEEEEEECCCC
Confidence 3789999999764
|
| >1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A | Back alignment and structure |
|---|
Probab=96.15 E-value=0.53 Score=54.60 Aligned_cols=258 Identities=11% Similarity=0.034 Sum_probs=138.4
Q ss_pred cCCEEEEec--CCCEEEEeCCCCccccccccccccCCCCCCCCCCeeeeeecCCCeEEEEE-c-CCCCEEEEEe------
Q 003171 141 TEEQLWAGG--ENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVG-D-EASGVVWSGH------ 210 (842)
Q Consensus 141 ~~~~l~~~~--D~~vrvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~V~~la~-d-pdg~~LaSGs------ 210 (842)
+++.||+.. +..|.+-|+++...... . ..| . ......+++ + |++++|+.++
T Consensus 100 DG~~lfVnd~~~~rVavIdl~t~~~~~i------------i-~ip-----~-g~~phg~~~~~~p~~~~v~~~~~~~~p~ 160 (595)
T 1fwx_A 100 DGRFLFMNDKANTRVARVRCDVMKCDAI------------L-EIP-----N-AKGIHGLRPQKWPRSNYVFCNGEDETPL 160 (595)
T ss_dssp EEEEEEEEETTTTEEEEEETTTTEEEEE------------E-ECS-----S-CCSEEEEEECCSSBCSEEEEEECSCEES
T ss_pred CCCEEEEEcCCCCEEEEEECCCceEeeE------------E-eCC-----C-CCCCcceeeeecCCCcEEEEeccccccc
Confidence 577888854 45799999987653321 0 011 1 224556776 5 8999999984
Q ss_pred ------------CCCcEEEEECCCCccCCCCCcceeEEec-ccCCcEEEEEEecCCC-EEEeeCC---------------
Q 003171 211 ------------RDGRIMCWKMNARLLDSDDGFGEVLSWQ-AHRGPVLSLCISSYGD-LWSGSEG--------------- 261 (842)
Q Consensus 211 ------------~DGtIrlWdl~~g~~~~~~~~~~~~~l~-gH~~~V~slafs~dG~-L~SgS~D--------------- 261 (842)
+++.+-+.|.++. +...+.. +- ++ ..++++|+|+ +++.+.+
T Consensus 161 ~~dg~~l~~~~~~~~~vtvID~~t~--------~v~~qI~Vgg-~p-d~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~ 230 (595)
T 1fwx_A 161 VNDGTNMEDVANYVNVFTAVDADKW--------EVAWQVLVSG-NL-DNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEM 230 (595)
T ss_dssp SCSSSSTTCGGGEEEEEEEEETTTT--------EEEEEEEESS-CC-CCEEECSSSSEEEEEESCTTCCSSHHHHTCCSE
T ss_pred CCCCcccccccccCceEEEEECCCC--------eEEEEEEeCC-Cc-cceEECCCCCEEEEEecCcccCcchhhcccccc
Confidence 3457888998874 3333322 11 22 4577999998 5565544
Q ss_pred CcEEEEeCCCccceeecCCCceeeeEEEEeeceeecccceeccceeeeec-CCEEEEEEcCCCCEEEEeC--CCcEEEEE
Q 003171 262 GGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILT-SDIKNLLSDHSRAKVWSAG--FLSFALWD 338 (842)
Q Consensus 262 gtIrvWd~~t~~~~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s-~~v~~las~~~~~~v~s~s--~~tI~lWD 338 (842)
..|.+-|+...+... ....... .-.-+.+|.+......-...++. ...-.+.++++|..++.++ ..+|.++|
T Consensus 231 d~v~V~~~~~~~~~v---~~Gk~~~--i~~V~VID~~~~~~~~~~~~Ipvg~~PhGv~~sPDGk~v~V~~~~s~~VsVid 305 (595)
T 1fwx_A 231 DHIVVFNIAEIEKAI---AAGDYQE--LNGVKVVDGRKEASSLFTRYIPIANNPHGCNMAPDKKHLCVAGKLSPTVTVLD 305 (595)
T ss_dssp EEEEEEEHHHHHHHH---HHTCSEE--ETTEEEEECSGGGCCSSEEEEEEESSCCCEEECTTSSEEEEECTTSSBEEEEE
T ss_pred ceEEEeeccceeEec---cCCCeeE--ECcEEEEeCcccCCceeEEEEecCCCceEEEEcCCCCEEEEeCCCCCeEEEEE
Confidence 346666664322111 0000000 00012344433100000112221 1334577788888777765 36899999
Q ss_pred ccCCcEEEEeecCCceEeeeecccCCCcccccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEeecCccccC
Q 003171 339 ARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDD 418 (842)
Q Consensus 339 ~~tg~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~ 418 (842)
+.+.+.. +.+ .. + . ... +.+. ..-
T Consensus 306 ~~~~~~~--~~~--~l----~--~------~~~---------------------------v~~~-------------v~v 329 (595)
T 1fwx_A 306 VTRFDAV--FYE--NA----D--P------RSA---------------------------VVAE-------------PEL 329 (595)
T ss_dssp GGGHHHH--HHS--CC----C--G------GGG---------------------------EEEC-------------CBC
T ss_pred Ccccccc--ccc--cc----C--c------ccc---------------------------eEEE-------------cCC
Confidence 8764310 000 00 0 0 000 0000 011
Q ss_pred CCceEEEEECCCCcEEE-EeCCCeEEEEcC-C----------CCeeeeeecCCccE--EE-----EEecCCEEEEEec--
Q 003171 419 NRRTEALTTSIDGMIWT-GGANGLLLQWDP-N----------GNRLQDFQYLPFAV--QC-----LCTFGSQIWVGYM-- 477 (842)
Q Consensus 419 ~~~v~al~~s~dg~l~S-gs~DgtIrlWD~-~----------g~~l~~l~~H~~~V--~s-----ls~dG~~LasGs~-- 477 (842)
......++|++||.+++ .--|+.|.+||+ + .+.+.++..|-.+- .. +.+||++|+++..
T Consensus 330 G~gP~h~aF~~dG~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~~g~t~~~DGk~l~~~Nk~s 409 (595)
T 1fwx_A 330 GLGPLHTAFDGRGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATNDWLVCLSKFS 409 (595)
T ss_dssp CSCEEEEEECTTSEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCSSEEEEEESCC
T ss_pred CCCcceEEECCCCeEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeecccccccceeccceEeCCCCCEEEEcCCCC
Confidence 12345688999997654 446899999998 4 34566666554432 21 2579999998763
Q ss_pred -CcE----------EEEEeCCC
Q 003171 478 -NGI----------VQVLDLEG 488 (842)
Q Consensus 478 -Dgt----------IrlWD~~g 488 (842)
|+- -+|.|++|
T Consensus 410 kdr~~~~gp~~~~~~ql~dis~ 431 (595)
T 1fwx_A 410 KDRFLNVGPLKPENDQLIDISG 431 (595)
T ss_dssp TTSSCCCCSSCCEEEEEEECSS
T ss_pred ccccccCCCCCCCcceEEEcCC
Confidence 442 28899875
|
| >3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=96.12 E-value=2 Score=46.38 Aligned_cols=99 Identities=13% Similarity=0.069 Sum_probs=61.7
Q ss_pred EEEEecCCCEEEEeCCCCccccccccccccCCCCCCCCCCeeeeeecCCCeEEEEEcCC-CCEEEEEeCCCcEEEEECCC
Q 003171 144 QLWAGGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEA-SGVVWSGHRDGRIMCWKMNA 222 (842)
Q Consensus 144 ~l~~~~D~~vrvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~V~~la~dpd-g~~LaSGs~DGtIrlWdl~~ 222 (842)
.|+.+..+.|+..+++.... ...+.+...+..+++++. +.+.|+-...+.|..+++++
T Consensus 46 ~ll~~~~~~I~~i~~~g~~~---------------------~~~~~~~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g 104 (349)
T 3v64_C 46 VLLFANRIDIRQVLPHRSEY---------------------TLLLNNLENAIALDFHHRRELVFWSDVTLDRILRANLNG 104 (349)
T ss_dssp EEEEECBSCEEEECTTSCCE---------------------EEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred eeEeecccceEEEeCCCCee---------------------EEeecCCCceEEEEEeccccEEEEEeccCCceEEEecCC
Confidence 45556667788888753211 111112335788999975 45666666778999999987
Q ss_pred CccCCCCCcceeEEecccCCcEEEEEEecC-CCE-EEeeCCCcEEEEeCCC
Q 003171 223 RLLDSDDGFGEVLSWQAHRGPVLSLCISSY-GDL-WSGSEGGGIKIWPWEA 271 (842)
Q Consensus 223 g~~~~~~~~~~~~~l~gH~~~V~slafs~d-G~L-~SgS~DgtIrvWd~~t 271 (842)
+. .............+|++++. |.| |+-+..+.|.+.++++
T Consensus 105 ~~--------~~~~~~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG 147 (349)
T 3v64_C 105 SN--------VEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDG 147 (349)
T ss_dssp CS--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred CC--------ceEEEeCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCC
Confidence 51 11112222234568999975 456 6777778899988865
|
| >3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L | Back alignment and structure |
|---|
Probab=96.03 E-value=2.4 Score=46.65 Aligned_cols=103 Identities=13% Similarity=0.121 Sum_probs=60.9
Q ss_pred EEEEecCCCEEEEeCCCCccccccccccccCCCCCCCCCCeeeeeecCCCeEEEEEcCCC-CEEEEEeCCCcEEEEECCC
Q 003171 144 QLWAGGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEAS-GVVWSGHRDGRIMCWKMNA 222 (842)
Q Consensus 144 ~l~~~~D~~vrvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~V~~la~dpdg-~~LaSGs~DGtIrlWdl~~ 222 (842)
.|+.+....|+.-+++..... ..+.+...+..|++++.. .+.|+-...+.|+.+++.+
T Consensus 85 ~ll~~~~~~I~~i~l~~~~~~---------------------~~~~~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g 143 (400)
T 3p5b_L 85 YLFFTNRHEVRKMTLDRSEYT---------------------SLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDR 143 (400)
T ss_dssp EEEEEETTEEEEECTTSCSCE---------------------EEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEEC--
T ss_pred eeEEeccceeEEEccCCccee---------------------EeccccCcceEEeeeeccCceEEEecCCCeEEEEEccc
Confidence 344556678888887642211 111113467889999854 5666666778999999876
Q ss_pred CccCCCCCcceeEEecccCCcEEEEEEec-CCCE-EEeeCCCcEEEEeCCC
Q 003171 223 RLLDSDDGFGEVLSWQAHRGPVLSLCISS-YGDL-WSGSEGGGIKIWPWEA 271 (842)
Q Consensus 223 g~~~~~~~~~~~~~l~gH~~~V~slafs~-dG~L-~SgS~DgtIrvWd~~t 271 (842)
.. ............-.....|++++ .+.| |+-+..+.|.+.++++
T Consensus 144 ~~----~~~~~~~~~~~~~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~g 190 (400)
T 3p5b_L 144 AH----GVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKG 190 (400)
T ss_dssp --------CCCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEECTTT
T ss_pred CC----CCCcceEEEeCCCCCcccEEEEecCCceEEEECCCCeEEEEeCCC
Confidence 20 00011122222345678999998 4556 5767778888888764
|
| >3ngq_A CCR4-NOT transcription complex subunit 6-like; alpha/beta sandwich fold, hydrolase; HET: 1PS; 1.80A {Homo sapiens} PDB: 3ngo_A 3ngn_A | Back alignment and structure |
|---|
Probab=96.02 E-value=0.0055 Score=68.12 Aligned_cols=31 Identities=10% Similarity=0.067 Sum_probs=26.5
Q ss_pred eEEEEEeecCcCCcchHHHHHHHHHHHHHhc
Q 003171 689 RIMCFVNCHFAAHLEAVNRRNADFDHVYRTM 719 (842)
Q Consensus 689 ~~~~Fv~~HLaa~~~~~~~Rn~~~~~I~~~l 719 (842)
..|+++|+||..+...-..|..+...|++.+
T Consensus 195 ~~l~V~nTHL~~~p~~~~vRl~Q~~~Ll~~l 225 (398)
T 3ngq_A 195 QLLIVANAHMHWDPEYSDVKLIQTMMFVSEV 225 (398)
T ss_dssp CEEEEEEEECCCCTTCHHHHHHHHHHHHHHH
T ss_pred cEEEEEEeCcCCCCCCHHHHHHHHHHHHHHH
Confidence 5799999999998776778888998888875
|
| >2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A* | Back alignment and structure |
|---|
Probab=95.79 E-value=3.6 Score=47.59 Aligned_cols=82 Identities=24% Similarity=0.314 Sum_probs=51.6
Q ss_pred CCCeEEEEcC-CCCeeeeeecCCccEE--EEEecCCEEEEEecCcEEEEEeCC-Ccccccccccc----cCEEEEEeCCC
Q 003171 438 ANGLLLQWDP-NGNRLQDFQYLPFAVQ--CLCTFGSQIWVGYMNGIVQVLDLE-GNLLGGWVAHS----SPVIKMAVGAG 509 (842)
Q Consensus 438 ~DgtIrlWD~-~g~~l~~l~~H~~~V~--sls~dG~~LasGs~DgtIrlWD~~-g~~i~~l~gH~----~~V~sla~dg~ 509 (842)
.+|.|..||+ +|+.+-++... ..+. .+...+.+++.|+.|+.|+.||.+ |+++-.+.... .++. ...+|+
T Consensus 442 ~~g~l~a~D~~tG~~~W~~~~~-~~~~~~~~~t~gg~v~~g~~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~~-~~~~G~ 519 (571)
T 2ad6_A 442 EMGQIRAFDLTTGKAKWTKWEK-FAAWGGTLYTKGGLVWYATLDGYLKALDNKDGKELWNFKMPSGGIGSPMT-YSFKGK 519 (571)
T ss_dssp CCEEEEEECTTTCCEEEEEEES-SCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEE-EEETTE
T ss_pred CCCeEEEEECCCCCEEEEecCC-CCccceeEEECCCEEEEEcCCCeEEEEECCCCCEEEEEeCCCCcEeeeEE-EEECCE
Confidence 4678999999 78876655432 2222 234567888889999999999986 88765554322 2222 235666
Q ss_pred E-EEEEcCCCCee
Q 003171 510 Y-IFTLANHGGIR 521 (842)
Q Consensus 510 ~-l~S~S~DgtIr 521 (842)
. +.+.+..+.++
T Consensus 520 ~yv~~~~G~~g~~ 532 (571)
T 2ad6_A 520 QYIGSMYGVGGWP 532 (571)
T ss_dssp EEEEEEECCCTTT
T ss_pred EEEEEECCCCCcc
Confidence 4 44555555433
|
| >2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=95.77 E-value=1.1 Score=50.25 Aligned_cols=73 Identities=15% Similarity=0.115 Sum_probs=42.8
Q ss_pred EEEEc--CCCCEEEE-EeCCCcEEEEECCCCccCCCCCcceeEEec--------ccCCcEEEEEEecCCCEEEeeCC---
Q 003171 196 CMVGD--EASGVVWS-GHRDGRIMCWKMNARLLDSDDGFGEVLSWQ--------AHRGPVLSLCISSYGDLWSGSEG--- 261 (842)
Q Consensus 196 ~la~d--pdg~~LaS-Gs~DGtIrlWdl~~g~~~~~~~~~~~~~l~--------gH~~~V~slafs~dG~L~SgS~D--- 261 (842)
|.+++ +++++|+. |-.+++|.+.|+.+.. ...+...+.. |-+ .-..+..+|+|-++|+..+
T Consensus 86 ~~~~~~~~~r~~l~v~~l~s~~I~viD~~t~p----~~p~~~k~ie~~~~~~~~g~s-~Ph~~~~~pdGi~Vs~~g~~~g 160 (462)
T 2ece_A 86 CPNGKPNIERRFLIVPGLRSSRIYIIDTKPNP----REPKIIKVIEPEEVKKVSGYS-RLHTVHCGPDAIYISALGNEEG 160 (462)
T ss_dssp STTCCTTCCSCEEEEEBTTTCCEEEEECCSCT----TSCEEEEEECHHHHHHHHCEE-EEEEEEECSSCEEEEEEEETTS
T ss_pred ccccCCCccCCEEEEccCCCCeEEEEECCCCC----CCceeeeeechhhcccccCCC-cccceeECCCeEEEEcCCCcCC
Confidence 44445 66666554 6678899999987531 1112223331 111 2345778899932454444
Q ss_pred ---CcEEEEeCCCcc
Q 003171 262 ---GGIKIWPWEAIE 273 (842)
Q Consensus 262 ---gtIrvWd~~t~~ 273 (842)
+.|-+.|.++.+
T Consensus 161 ~~~g~v~vlD~~T~~ 175 (462)
T 2ece_A 161 EGPGGILMLDHYSFE 175 (462)
T ss_dssp CSCCEEEEECTTTCC
T ss_pred CCCCeEEEEECCCCe
Confidence 789999987654
|
| >3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=95.74 E-value=0.053 Score=56.59 Aligned_cols=107 Identities=11% Similarity=-0.003 Sum_probs=76.4
Q ss_pred eEEEEECCCCcEE-EEeCCCeEEEEcC-CCCeeeeeecCCc-cEEEEEecCCEEEEEe-cCcEEEEEeCC-Ccccccccc
Q 003171 422 TEALTTSIDGMIW-TGGANGLLLQWDP-NGNRLQDFQYLPF-AVQCLCTFGSQIWVGY-MNGIVQVLDLE-GNLLGGWVA 496 (842)
Q Consensus 422 v~al~~s~dg~l~-Sgs~DgtIrlWD~-~g~~l~~l~~H~~-~V~sls~dG~~LasGs-~DgtIrlWD~~-g~~i~~l~g 496 (842)
...|.++ +++|+ +.+.+|.|+..|+ +|+.++++ .... ---.++++|.+||... .++.+.++|.+ .+.+.++..
T Consensus 57 tqGL~~~-~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~~~~FgeGit~~g~~Ly~ltw~~~~v~V~D~~Tl~~~~ti~~ 134 (268)
T 3nok_A 57 TQGLVFH-QGHFFESTGHQGTLRQLSLESAQPVWME-RLGNIFAEGLASDGERLYQLTWTEGLLFTWSGMPPQRERTTRY 134 (268)
T ss_dssp EEEEEEE-TTEEEEEETTTTEEEECCSSCSSCSEEE-ECTTCCEEEEEECSSCEEEEESSSCEEEEEETTTTEEEEEEEC
T ss_pred cceEEEE-CCEEEEEcCCCCEEEEEECCCCcEEeEE-CCCCcceeEEEEeCCEEEEEEccCCEEEEEECCcCcEEEEEeC
Confidence 3557776 45665 5556788999999 79888877 3222 2235788888777765 58999999987 677777764
Q ss_pred cccCEEEEEeCCCEEEEEcCCCCeeeccccCCCCC
Q 003171 497 HSSPVIKMAVGAGYIFTLANHGGIRGWNVTSPGPL 531 (842)
Q Consensus 497 H~~~V~sla~dg~~l~S~S~DgtIrvWd~~~~~~~ 531 (842)
- ..=+.++.|++.|+....++.|.++|..+...+
T Consensus 135 ~-~eGwGLt~Dg~~L~vSdGs~~l~~iDp~T~~v~ 168 (268)
T 3nok_A 135 S-GEGWGLCYWNGKLVRSDGGTMLTFHEPDGFALV 168 (268)
T ss_dssp S-SCCCCEEEETTEEEEECSSSEEEEECTTTCCEE
T ss_pred C-CceeEEecCCCEEEEECCCCEEEEEcCCCCeEE
Confidence 3 223677888988887667888999997665443
|
| >3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.63 E-value=5.7 Score=47.91 Aligned_cols=77 Identities=12% Similarity=0.127 Sum_probs=48.7
Q ss_pred CCCeEEEEEcCC-CCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCC-CE-EEeeCCCcEEEE
Q 003171 191 VSSVMCMVGDEA-SGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYG-DL-WSGSEGGGIKIW 267 (842)
Q Consensus 191 ~~~V~~la~dpd-g~~LaSGs~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG-~L-~SgS~DgtIrvW 267 (842)
...+..|++++. +.+.|+-...+.|+.+++.+.. ........+...-.....|++++.+ +| |+-+..+.|.+.
T Consensus 423 ~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~----~~~~~~~vi~~~l~~P~GLAvD~~~~~LY~tD~~~~~I~v~ 498 (791)
T 3m0c_C 423 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAH----GVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVA 498 (791)
T ss_dssp CSSEEEEEEETTTTEEEEEETTTTEEEEEEC------------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEE
T ss_pred CCceEEEeecccCCeeEEeeccceeEEEEeccCCC----CCcceeEEEecCCCCcceeeeeecCCcEEEEecCCCeEEEE
Confidence 346788999984 5566777777889999987631 0001112222233456789999877 45 677778899998
Q ss_pred eCCC
Q 003171 268 PWEA 271 (842)
Q Consensus 268 d~~t 271 (842)
++++
T Consensus 499 ~ldG 502 (791)
T 3m0c_C 499 DTKG 502 (791)
T ss_dssp ETTS
T ss_pred eCCC
Confidence 8865
|
| >1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A | Back alignment and structure |
|---|
Probab=95.60 E-value=1.3 Score=52.13 Aligned_cols=70 Identities=7% Similarity=0.127 Sum_probs=45.5
Q ss_pred EEEEcC-CCCEEEEEeCCC-----------cEEEEECCCCccCCCCCcceeEEe-cccCCcEEEEEEecCCCE-EEee-C
Q 003171 196 CMVGDE-ASGVVWSGHRDG-----------RIMCWKMNARLLDSDDGFGEVLSW-QAHRGPVLSLCISSYGDL-WSGS-E 260 (842)
Q Consensus 196 ~la~dp-dg~~LaSGs~DG-----------tIrlWdl~~g~~~~~~~~~~~~~l-~gH~~~V~slafs~dG~L-~SgS-~ 260 (842)
++++.+ ++++++.|+.+. .+.+||..++. ...+..+ ..|.....++++..+|+| +.|+ .
T Consensus 190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~------w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~ 263 (656)
T 1k3i_A 190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGI------VSDRTVTVTKHDMFCPGISMDGNGQIVVTGGND 263 (656)
T ss_dssp EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCC------BCCCEEEECSCCCSSCEEEECTTSCEEEECSSS
T ss_pred eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCc------EEeCcccCCCCCCccccccCCCCCCEEEeCCCC
Confidence 345556 889999988653 57889988752 2222222 223333445778889995 5676 4
Q ss_pred CCcEEEEeCCC
Q 003171 261 GGGIKIWPWEA 271 (842)
Q Consensus 261 DgtIrvWd~~t 271 (842)
+..+.+||..+
T Consensus 264 ~~~v~~yd~~t 274 (656)
T 1k3i_A 264 AKKTSLYDSSS 274 (656)
T ss_dssp TTCEEEEEGGG
T ss_pred CCceEEecCcC
Confidence 56899999865
|
| >1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1 | Back alignment and structure |
|---|
Probab=95.59 E-value=2.7 Score=48.89 Aligned_cols=85 Identities=21% Similarity=0.316 Sum_probs=53.4
Q ss_pred CCCeEEEEcC-CCCeeeeeecCCccEE--EEEecCCEEEEEecCcEEEEEeCC-CcccccccccccCEEE-E--EeCCC-
Q 003171 438 ANGLLLQWDP-NGNRLQDFQYLPFAVQ--CLCTFGSQIWVGYMNGIVQVLDLE-GNLLGGWVAHSSPVIK-M--AVGAG- 509 (842)
Q Consensus 438 ~DgtIrlWD~-~g~~l~~l~~H~~~V~--sls~dG~~LasGs~DgtIrlWD~~-g~~i~~l~gH~~~V~s-l--a~dg~- 509 (842)
.+|.|.-||+ +|+.+=+...+. ++. .+...|..++.|+.|+.|+.||.+ |+.+-.+....+.+.+ + ..+|+
T Consensus 464 ~~G~l~A~D~~tG~~~W~~~~~~-~~~~g~~~tagglvf~g~~dg~l~A~D~~tG~~lW~~~~~~g~~a~P~~y~~~G~q 542 (582)
T 1flg_A 464 HVGSLRAMDPVSGKVVWEHKEHL-PLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSGIVSPPITWEQDGEQ 542 (582)
T ss_dssp CSEEEEEECTTTCCEEEEEEESS-CCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEE
T ss_pred CcceEEEEECCCCCEEEEecCCC-CCcccceEeCCCEEEEECCCCcEEEEECCCCCEEEEecCCCCcccCceEEEECCEE
Confidence 3688999999 787764443322 222 245568889999999999999986 8877666544332211 2 35776
Q ss_pred EEEEEcC-CCCeeec
Q 003171 510 YIFTLAN-HGGIRGW 523 (842)
Q Consensus 510 ~l~S~S~-DgtIrvW 523 (842)
+++..+. .+.+-+|
T Consensus 543 Yv~~~~G~gg~~~~~ 557 (582)
T 1flg_A 543 YLGVTVGYGGAVPLW 557 (582)
T ss_dssp EEEEEECCCSHHHHH
T ss_pred EEEEEccCCCccccc
Confidence 4544433 4445555
|
| >1sr4_B CDT B, cytolethal distending toxin protein B; bacterial, virulence, DNA damage, genotoxin, cytotoxins, cell cycle, apoptosis, lectin; 2.00A {Haemophilus ducreyi} SCOP: d.151.1.1 PDB: 2f2f_B | Back alignment and structure |
|---|
Probab=95.57 E-value=0.08 Score=54.98 Aligned_cols=37 Identities=22% Similarity=0.292 Sum_probs=26.8
Q ss_pred CCCeeEEEEEEeCeEEEEEeecCcCCcchHHHHHHHHHHHHHh
Q 003171 676 NKGAVGLRVRVYDRIMCFVNCHFAAHLEAVNRRNADFDHVYRT 718 (842)
Q Consensus 676 nKG~v~i~~~i~~~~~~Fv~~HLaa~~~~~~~Rn~~~~~I~~~ 718 (842)
..|+++++ +.+ +.|++.||.+... .+|.+..+.|...
T Consensus 121 ~R~~l~i~--i~g--~~f~s~Hl~~~~~--~ea~~~v~~I~~~ 157 (261)
T 1sr4_B 121 SRPAVGIR--IGT--DVFFTVHALATGG--SDAVSLIRNIFTT 157 (261)
T ss_dssp CCCEEEEE--ETT--EEEEEEECCTTTT--TTHHHHHHHHHHH
T ss_pred CcceEEEE--ECC--eEEEEeCCCCCCC--chHHHHHHHHHHH
Confidence 78888884 666 9999999999852 3355556666554
|
| >1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1 | Back alignment and structure |
|---|
Probab=95.54 E-value=1 Score=52.49 Aligned_cols=52 Identities=19% Similarity=0.327 Sum_probs=34.7
Q ss_pred CcEEEEEeCC-CcccccccccccCEE--EEEeCCCEEEEEcCCCCeeeccccCCCC
Q 003171 478 NGIVQVLDLE-GNLLGGWVAHSSPVI--KMAVGAGYIFTLANHGGIRGWNVTSPGP 530 (842)
Q Consensus 478 DgtIrlWD~~-g~~i~~l~gH~~~V~--sla~dg~~l~S~S~DgtIrvWd~~~~~~ 530 (842)
+|+|..||+. |+.+=....+. .++ .+...+..++.++.|+.++.||.++...
T Consensus 465 ~G~l~A~D~~tG~~~W~~~~~~-~~~~g~~~tagglvf~g~~dg~l~A~D~~tG~~ 519 (582)
T 1flg_A 465 VGSLRAMDPVSGKVVWEHKEHL-PLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKE 519 (582)
T ss_dssp SEEEEEECTTTCCEEEEEEESS-CCCSCCEEETTTEEEEECTTSEEEEEETTTCCE
T ss_pred cceEEEEECCCCCEEEEecCCC-CCcccceEeCCCEEEEECCCCcEEEEECCCCCE
Confidence 6899999986 76542222221 222 2345677888999999999999776443
|
| >2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major} | Back alignment and structure |
|---|
Probab=95.46 E-value=0.39 Score=57.75 Aligned_cols=102 Identities=15% Similarity=0.058 Sum_probs=55.0
Q ss_pred EEEECCCCc-EEEEe---CCCeEEEEcCC-CC-ee--eeee-cCCccEEEEE-ecCCEEEEEec-C----cEEEEEeCCC
Q 003171 424 ALTTSIDGM-IWTGG---ANGLLLQWDPN-GN-RL--QDFQ-YLPFAVQCLC-TFGSQIWVGYM-N----GIVQVLDLEG 488 (842)
Q Consensus 424 al~~s~dg~-l~Sgs---~DgtIrlWD~~-g~-~l--~~l~-~H~~~V~sls-~dG~~LasGs~-D----gtIrlWD~~g 488 (842)
.+.+||||+ |+..+ ....|.++|++ ++ .. +.+. .......++. .+|+.|+..+. + ..|.++|+++
T Consensus 275 ~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~s~~~~~g~~l~~~t~~~~a~~~~L~~~d~~~ 354 (751)
T 2xe4_A 275 FMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPREKGVRYDVQMHGTSHLVILTNEGGAVNHKLLIAPRGQ 354 (751)
T ss_dssp EEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCCTTCCEEEEEETTTEEEEEECTTTCTTCEEEEEETTS
T ss_pred EEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEeecCCCCceEEEeeeeCCEEEEEeCCCCCCCcEEEEEcCCC
Confidence 345667775 43222 23357778884 31 22 3333 3344555555 45776665443 3 3677777763
Q ss_pred -ccccc-cccccc--CEEEEEeCCCE-EEEEcCCCCeeeccc
Q 003171 489 -NLLGG-WVAHSS--PVIKMAVGAGY-IFTLANHGGIRGWNV 525 (842)
Q Consensus 489 -~~i~~-l~gH~~--~V~sla~dg~~-l~S~S~DgtIrvWd~ 525 (842)
...+. +..|.. .+.++.++++. +++...|+..++|-+
T Consensus 355 ~~~~~~~li~~~~~~~l~~~~~~~~~lv~~~~~~g~~~l~~~ 396 (751)
T 2xe4_A 355 PSDWSHVLVDHSEDVFMESIAVRSNYLVVAGRRAGLTRIWTM 396 (751)
T ss_dssp TTCCCCEEECCCSSEEEEEEEECSSEEEEEEEETTEEEEEEE
T ss_pred cccceeeEECCCCCcEEEEEEEECCEEEEEEEeCCEEEEEEE
Confidence 33334 444544 34566665555 457777887666654
|
| >4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=95.45 E-value=4.2 Score=45.25 Aligned_cols=59 Identities=10% Similarity=0.012 Sum_probs=43.0
Q ss_pred CeEEEEEcCC--CCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCCCEEEeeC
Q 003171 193 SVMCMVGDEA--SGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGDLWSGSE 260 (842)
Q Consensus 193 ~V~~la~dpd--g~~LaSGs~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~L~SgS~ 260 (842)
...+|+++|+ .+.||.+...+.|+.+++.++ .+..+.+......+|+++++|+|+.+..
T Consensus 140 ~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g---------~v~~~~~~~~~P~giavd~dG~lyVad~ 200 (433)
T 4hw6_A 140 NIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQ---------YVDIKTTNIGQCADVNFTLNGDMVVVDD 200 (433)
T ss_dssp CCCEEEECTTTTTCEEEEECBTSCEEEEETTTT---------EEEEECCCCSCEEEEEECTTCCEEEEEC
T ss_pred CCceEEEccccCCCEEEEEeCCCCEEEEECCCC---------EEEEeecCCCCccEEEECCCCCEEEEcC
Confidence 4568999984 566777666589999999775 3444544455689999999999765543
|
| >3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=95.03 E-value=2.6 Score=46.97 Aligned_cols=58 Identities=9% Similarity=0.039 Sum_probs=42.0
Q ss_pred CeEEEEEcC-CCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCCC-EEEee
Q 003171 193 SVMCMVGDE-ASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGS 259 (842)
Q Consensus 193 ~V~~la~dp-dg~~LaSGs~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS 259 (842)
....|++|| +++.|+.....+.|+.+|++++ .+..+.........|+|+++|+ |+.+.
T Consensus 138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~---------~v~~~~~~~~~P~~ia~d~~G~~lyvad 197 (430)
T 3tc9_A 138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKE---------YVSTVYSGLSKVRTICWTHEADSMIITN 197 (430)
T ss_dssp CCCEEEEETTEEEEEEEEEBTEEEEEEETTTT---------EEEEEECCCSCEEEEEECTTSSEEEEEE
T ss_pred CCCEEEECCCCCCeEEEEeCCCcEEEEECCCC---------EEEEEecCCCCcceEEEeCCCCEEEEEe
Confidence 456789998 5677887777688999999874 3334433445678999999998 76444
|
| >2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus} | Back alignment and structure |
|---|
Probab=95.03 E-value=4.4 Score=43.02 Aligned_cols=103 Identities=17% Similarity=0.212 Sum_probs=61.2
Q ss_pred ceEEEEECCCCcEEEEeCCCeEEEEcCC-CCeeeeee-c---CCccEEEEEec-CCEEEEEecCcEEEEEeCC-Cccccc
Q 003171 421 RTEALTTSIDGMIWTGGANGLLLQWDPN-GNRLQDFQ-Y---LPFAVQCLCTF-GSQIWVGYMNGIVQVLDLE-GNLLGG 493 (842)
Q Consensus 421 ~v~al~~s~dg~l~Sgs~DgtIrlWD~~-g~~l~~l~-~---H~~~V~sls~d-G~~LasGs~DgtIrlWD~~-g~~i~~ 493 (842)
.+..+++++++.+|.++.+|.+.+++.+ |+--..+. . +...+.++.++ ...+++++.++.| .+... |+.-..
T Consensus 206 ~~~~~~~~~~g~~~~~~~~G~~~~s~~D~G~tW~~~~~~~~~~~~~~~~v~~~~~~~~~~~g~~g~i-~~S~DgG~tW~~ 284 (327)
T 2xbg_A 206 RLHNMGFTPDGRLWMIVNGGKIAFSDPDNSENWGELLSPLRRNSVGFLDLAYRTPNEVWLAGGAGAL-LCSQDGGQTWQQ 284 (327)
T ss_dssp CEEEEEECTTSCEEEEETTTEEEEEETTEEEEECCCBCTTSSCCSCEEEEEESSSSCEEEEESTTCE-EEESSTTSSCEE
T ss_pred ccceeEECCCCCEEEEeCCceEEEecCCCCCeeEeccCCcccCCcceEEEEecCCCEEEEEeCCCeE-EEeCCCCcccEE
Confidence 3456677888888888888888887543 44333222 1 23457788663 2344444557777 34443 443222
Q ss_pred cc---ccccCEEEEEe-CCCEEEEEcCCCCeeecc
Q 003171 494 WV---AHSSPVIKMAV-GAGYIFTLANHGGIRGWN 524 (842)
Q Consensus 494 l~---gH~~~V~sla~-dg~~l~S~S~DgtIrvWd 524 (842)
+. .+...+.+|.+ ++..++.++.+|+|..++
T Consensus 285 ~~~~~~~~~~~~~v~~~~~~~~~~~G~~G~i~~~~ 319 (327)
T 2xbg_A 285 DVDVKKVPSNFYKILFFSPDQGFILGQKGILLRYV 319 (327)
T ss_dssp CGGGTTSSSCCCEEEEEETTEEEEECSTTEEEEEC
T ss_pred cCccCCCCCCeEEEEEECCCceEEEcCCceEEEEc
Confidence 22 23455677765 566788888999877665
|
| >3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=94.99 E-value=0.24 Score=51.00 Aligned_cols=107 Identities=14% Similarity=0.055 Sum_probs=75.0
Q ss_pred eEEEEECCCCcEEEEeCC---CeEEEEcC-CCCeeeeeecCCcc-EEEEEecCCEEEEEe-cCcEEEEEeCC-Ccccccc
Q 003171 422 TEALTTSIDGMIWTGGAN---GLLLQWDP-NGNRLQDFQYLPFA-VQCLCTFGSQIWVGY-MNGIVQVLDLE-GNLLGGW 494 (842)
Q Consensus 422 v~al~~s~dg~l~Sgs~D---gtIrlWD~-~g~~l~~l~~H~~~-V~sls~dG~~LasGs-~DgtIrlWD~~-g~~i~~l 494 (842)
+..|.|++ ++|+.++.. ..|+..|+ +|+.++.+...... --.+.+++.+|+... .++.+.++|.+ .+.+.++
T Consensus 23 tqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~~~~ly~ltw~~~~v~v~D~~tl~~~~ti 101 (243)
T 3mbr_X 23 TEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAWRDRLIQLTWRNHEGFVYDLATLTPRARF 101 (243)
T ss_dssp EEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEEESSSSEEEEEETTTTEEEEEE
T ss_pred cccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEeCCEEEEEEeeCCEEEEEECCcCcEEEEE
Confidence 45677775 677655443 38999999 79988877643322 235677888888766 58999999987 6777776
Q ss_pred cccccCEEEEEeCCCEEEEEcCCCCeeeccccCCCC
Q 003171 495 VAHSSPVIKMAVGAGYIFTLANHGGIRGWNVTSPGP 530 (842)
Q Consensus 495 ~gH~~~V~sla~dg~~l~S~S~DgtIrvWd~~~~~~ 530 (842)
...... +.++.|++.|+....++.|.++|..+...
T Consensus 102 ~~~~~G-wglt~dg~~L~vSdgs~~l~~iDp~t~~~ 136 (243)
T 3mbr_X 102 RYPGEG-WALTSDDSHLYMSDGTAVIRKLDPDTLQQ 136 (243)
T ss_dssp ECSSCC-CEEEECSSCEEEECSSSEEEEECTTTCCE
T ss_pred eCCCCc-eEEeeCCCEEEEECCCCeEEEEeCCCCeE
Confidence 543322 67788888776555678899998766543
|
| >1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A* | Back alignment and structure |
|---|
Probab=94.99 E-value=2.7 Score=49.06 Aligned_cols=77 Identities=21% Similarity=0.344 Sum_probs=49.0
Q ss_pred CCCeEEEEcC-CCCeeeeeecCCccEE--EEEecCCEEEEEecCcEEEEEeCC-Cccccccccccc----CEEEEEeCCC
Q 003171 438 ANGLLLQWDP-NGNRLQDFQYLPFAVQ--CLCTFGSQIWVGYMNGIVQVLDLE-GNLLGGWVAHSS----PVIKMAVGAG 509 (842)
Q Consensus 438 ~DgtIrlWD~-~g~~l~~l~~H~~~V~--sls~dG~~LasGs~DgtIrlWD~~-g~~i~~l~gH~~----~V~sla~dg~ 509 (842)
.+|.|.-||+ +|+.+=.... ..++. .+...|..++.|+.|+.|+.||.+ |+.+-.+....+ ++. ...+|+
T Consensus 451 ~~G~l~A~D~~tG~~~W~~~~-~~~~~~g~~~tagg~vf~gt~dg~l~A~D~~tG~~lW~~~l~~g~~~~P~~-y~~~G~ 528 (599)
T 1w6s_A 451 GLGQIKAYNAITGDYKWEKME-RFAVWGGTMATAGDLVFYGTLDGYLKARDSDTGDLLWKFKIPSGAIGYPMT-YTHKGT 528 (599)
T ss_dssp CCEEEEEECTTTCCEEEEEEE-SSCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEE-EEETTE
T ss_pred CcCeEEEEECCCCCEEeEecC-CCCccCcceEecCCEEEEECCCCeEEEEECCCCCEEEEeeCCCCcEeccEE-EEeCCE
Confidence 3578999999 7876544432 11222 256678888899999999999987 887655543332 222 235776
Q ss_pred -EEEEEcC
Q 003171 510 -YIFTLAN 516 (842)
Q Consensus 510 -~l~S~S~ 516 (842)
++++.+.
T Consensus 529 qyv~~~~G 536 (599)
T 1w6s_A 529 QYVAIYYG 536 (599)
T ss_dssp EEEEEEEC
T ss_pred EEEEEEcc
Confidence 4554443
|
| >1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A | Back alignment and structure |
|---|
Probab=94.57 E-value=0.76 Score=53.27 Aligned_cols=92 Identities=10% Similarity=0.096 Sum_probs=56.2
Q ss_pred EEEEECCCCc-E-EEEeCCCeEEEEcCC-CC------------eeeeeecCCccEE-EEEecCCEEEEEe-cCcEEEEEe
Q 003171 423 EALTTSIDGM-I-WTGGANGLLLQWDPN-GN------------RLQDFQYLPFAVQ-CLCTFGSQIWVGY-MNGIVQVLD 485 (842)
Q Consensus 423 ~al~~s~dg~-l-~Sgs~DgtIrlWD~~-g~------------~l~~l~~H~~~V~-sls~dG~~LasGs-~DgtIrlWD 485 (842)
..+.++|||+ + +++-.+.+|.++|.+ .+ .+.+......+-. .+.++| ++++.. .|+.|.+||
T Consensus 280 hGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~vG~gP~h~aF~~dG-~aY~t~~ldsqV~kwd 358 (595)
T 1fwx_A 280 HGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELGLGPLHTAFDGRG-NAYTSLFLDSQVVKWN 358 (595)
T ss_dssp CCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCBCCSCEEEEEECTTS-EEEEEETTTTEEEEEE
T ss_pred eEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcCCCCCcceEEECCCC-eEEEEEecCCcEEEEE
Confidence 3578999998 4 344467889999995 32 2333333333322 345578 777655 599999999
Q ss_pred CCC-----------cccccccccccCE--EE-----EEeCCCEEEEEc
Q 003171 486 LEG-----------NLLGGWVAHSSPV--IK-----MAVGAGYIFTLA 515 (842)
Q Consensus 486 ~~g-----------~~i~~l~gH~~~V--~s-----la~dg~~l~S~S 515 (842)
++. +.+.++..|-.+- .. +.+||++|+++-
T Consensus 359 i~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~~g~t~~~DGk~l~~~N 406 (595)
T 1fwx_A 359 IEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATNDWLVCLS 406 (595)
T ss_dssp HHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCSSEEEEEE
T ss_pred hhHhhhhhcccccceeEEEeecccccccceeccceEeCCCCCEEEEcC
Confidence 742 2455555554431 11 126888888753
|
| >3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=93.82 E-value=8.4 Score=41.27 Aligned_cols=103 Identities=15% Similarity=0.133 Sum_probs=60.2
Q ss_pred eEEEEECC-CCcE-EEEeCC-CeEEEEcCCCCeeeeeec-CCccEEEEEe--cCCEEEEEe-cCcEEEEEeCCCcccccc
Q 003171 422 TEALTTSI-DGMI-WTGGAN-GLLLQWDPNGNRLQDFQY-LPFAVQCLCT--FGSQIWVGY-MNGIVQVLDLEGNLLGGW 494 (842)
Q Consensus 422 v~al~~s~-dg~l-~Sgs~D-gtIrlWD~~g~~l~~l~~-H~~~V~sls~--dG~~LasGs-~DgtIrlWD~~g~~i~~l 494 (842)
...++++| +|.| |+-..+ +.|...+++|.....+.. .-..-+.|+. ++.+|+.+. ..+.|+.+|+.|...+++
T Consensus 161 P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~~~~~~ 240 (349)
T 3v64_C 161 PRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAV 240 (349)
T ss_dssp EEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEESCCSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEE
T ss_pred cceEEEecCcCeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCCceEEE
Confidence 34566776 4555 454444 778888888765555432 2334566665 466666655 467999999987543332
Q ss_pred -cccccCEEEEEeCCCEEEEEc-CCCCeeecc
Q 003171 495 -VAHSSPVIKMAVGAGYIFTLA-NHGGIRGWN 524 (842)
Q Consensus 495 -~gH~~~V~sla~dg~~l~S~S-~DgtIrvWd 524 (842)
........+|+.++..++++. ..+.|...+
T Consensus 241 ~~~~~~~P~giav~~~~ly~td~~~~~V~~~~ 272 (349)
T 3v64_C 241 ISQGLPHPFAITVFEDSLYWTDWHTKSINSAN 272 (349)
T ss_dssp ECSSCSSEEEEEEETTEEEEEETTTTEEEEEE
T ss_pred EeCCCCCceEEEEECCEEEEecCCCCeEEEEE
Confidence 222334566665566666554 344555444
|
| >3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L | Back alignment and structure |
|---|
Probab=93.68 E-value=9.9 Score=41.62 Aligned_cols=104 Identities=13% Similarity=0.060 Sum_probs=61.8
Q ss_pred eEEEEECC-CCcE-EEEeC-CCeEEEEcCCCCeeeeeec-CCccEEEEEec--CCEEEEEe-cCcEEEEEeCCCcccccc
Q 003171 422 TEALTTSI-DGMI-WTGGA-NGLLLQWDPNGNRLQDFQY-LPFAVQCLCTF--GSQIWVGY-MNGIVQVLDLEGNLLGGW 494 (842)
Q Consensus 422 v~al~~s~-dg~l-~Sgs~-DgtIrlWD~~g~~l~~l~~-H~~~V~sls~d--G~~LasGs-~DgtIrlWD~~g~~i~~l 494 (842)
...|+++| +|.| |+-.. .+.|...+++|...+.+.. .-...+.|+.| +.+|+.+. ..+.|+..|++|...+++
T Consensus 204 P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~~~~~~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~ 283 (400)
T 3p5b_L 204 PRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTI 283 (400)
T ss_dssp EEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCCEEE
T ss_pred cceEEEecccCeEEEEeCCCCCEEEEEeCCCCccEEEEECCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCccEEE
Confidence 34566666 4555 33322 3568888888765555432 22455667665 66776665 467999999987544333
Q ss_pred cc---cccCEEEEEeCCCEEEEEc-CCCCeeeccc
Q 003171 495 VA---HSSPVIKMAVGAGYIFTLA-NHGGIRGWNV 525 (842)
Q Consensus 495 ~g---H~~~V~sla~dg~~l~S~S-~DgtIrvWd~ 525 (842)
.. .-..-.+|+.+++.+++.. ..+.|..++.
T Consensus 284 ~~~~~~l~~P~gl~v~~~~lywtd~~~~~V~~~~~ 318 (400)
T 3p5b_L 284 LEDEKRLAHPFSLAVFEDKVFWTDIINEAIFSANR 318 (400)
T ss_dssp EECSSTTSSEEEEEEETTEEEEEESSSCSEEEEES
T ss_pred EeCCCCCCCCEEEEEeCCEEEEecCCCCeEEEEEc
Confidence 21 2234567776666666554 4556766663
|
| >4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A* | Back alignment and structure |
|---|
Probab=93.64 E-value=14 Score=43.22 Aligned_cols=72 Identities=13% Similarity=0.113 Sum_probs=48.6
Q ss_pred CCeEEEEEcCCC-CEEEEEeCCCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCC-CE-EEeeCCCcEEEEe
Q 003171 192 SSVMCMVGDEAS-GVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYG-DL-WSGSEGGGIKIWP 268 (842)
Q Consensus 192 ~~V~~la~dpdg-~~LaSGs~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG-~L-~SgS~DgtIrvWd 268 (842)
..+..|++++++ .+.|+-..++.|..+++++.. ....+..-......||+++.+ +| |+-+..+.|.+-+
T Consensus 37 ~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~--------~~~v~~~g~~~P~GlAvD~~~~~LY~tD~~~~~I~v~~ 108 (628)
T 4a0p_A 37 KEASALDFDVTDNRIYWTDISLKTISRAFMNGSA--------LEHVVEFGLDYPEGMAVDWLGKNLYWADTGTNRIEVSK 108 (628)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred CceEEEEEECCCCEEEEEECCCCeEEEEECCCCC--------cEEEEeCCCCCcceEEEEeCCCEEEEEECCCCEEEEEe
Confidence 357789999854 556676778899999987641 111122112346789999765 46 6777778888888
Q ss_pred CCC
Q 003171 269 WEA 271 (842)
Q Consensus 269 ~~t 271 (842)
+++
T Consensus 109 ~dG 111 (628)
T 4a0p_A 109 LDG 111 (628)
T ss_dssp TTS
T ss_pred cCC
Confidence 765
|
| >4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C} | Back alignment and structure |
|---|
Probab=93.39 E-value=0.013 Score=70.67 Aligned_cols=33 Identities=6% Similarity=0.028 Sum_probs=0.0
Q ss_pred eCeEEEEEeecCcCCcchHHHHHHHHHHHHHhc
Q 003171 687 YDRIMCFVNCHFAAHLEAVNRRNADFDHVYRTM 719 (842)
Q Consensus 687 ~~~~~~Fv~~HLaa~~~~~~~Rn~~~~~I~~~l 719 (842)
.+..|+++|+||.++...-..|..+...|++.+
T Consensus 545 ~g~~l~V~ntHL~~~p~~~~~R~~Qa~~l~~~l 577 (727)
T 4b8c_D 545 SGDTIWAVTTHLHWDPKFNDVKTFQVGVLLDHL 577 (727)
T ss_dssp ---------------------------------
T ss_pred CCceEEEEEeccccCCCCCchHHHHHHHHHHHH
Confidence 367899999999887544455666666665554
|
| >3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.38 E-value=18 Score=43.60 Aligned_cols=103 Identities=13% Similarity=0.061 Sum_probs=61.4
Q ss_pred eEEEEECCC-CcE-EEEeCC-CeEEEEcCCCCeeeeeec-CCccEEEEEec--CCEEEEEe-cCcEEEEEeCCCcccccc
Q 003171 422 TEALTTSID-GMI-WTGGAN-GLLLQWDPNGNRLQDFQY-LPFAVQCLCTF--GSQIWVGY-MNGIVQVLDLEGNLLGGW 494 (842)
Q Consensus 422 v~al~~s~d-g~l-~Sgs~D-gtIrlWD~~g~~l~~l~~-H~~~V~sls~d--G~~LasGs-~DgtIrlWD~~g~~i~~l 494 (842)
...|+++|. |.| |+-..+ +.|.+.+++|..++++.. .-.+.+.|+.| +.+|+.+. ....|+..|+.|..+.++
T Consensus 516 P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~lv~~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~~~~v 595 (791)
T 3m0c_C 516 PRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTI 595 (791)
T ss_dssp EEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEE
T ss_pred cceEEEecCCCCEEEecCCCCCeEEEEecCCCceEEEEeCCCCCceEEEEecCCCeEEEEeCCCCcEEEEecCCCceEEE
Confidence 445677664 555 443233 678888888866655543 23466777765 56666655 467899999987644433
Q ss_pred cc---cccCEEEEEeCCCEEEEEcC-CCCeeecc
Q 003171 495 VA---HSSPVIKMAVGAGYIFTLAN-HGGIRGWN 524 (842)
Q Consensus 495 ~g---H~~~V~sla~dg~~l~S~S~-DgtIrvWd 524 (842)
.. .-....+|+.++++|+++.. .+.|..-+
T Consensus 596 ~~~~~~l~~P~glav~~~~lYwtD~~~~~I~~~d 629 (791)
T 3m0c_C 596 LEDEKRLAHPFSLAVFEDKVFWTDIINEAIFSAN 629 (791)
T ss_dssp EECTTTTSSEEEEEEETTEEEEEETTTTEEEEEE
T ss_pred ecCCCccCCCCEEEEeCCEEEEEECCCCEEEEEe
Confidence 21 22345677766667776654 34444433
|
| >2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus} | Back alignment and structure |
|---|
Probab=92.92 E-value=11 Score=39.87 Aligned_cols=64 Identities=17% Similarity=0.132 Sum_probs=41.0
Q ss_pred eEEEEECCCCcEEEEeCCCeEEEEcC-CCCeeeeee---cCCccEEEEEe-cCCEEEEEecCcEEEEEeC
Q 003171 422 TEALTTSIDGMIWTGGANGLLLQWDP-NGNRLQDFQ---YLPFAVQCLCT-FGSQIWVGYMNGIVQVLDL 486 (842)
Q Consensus 422 v~al~~s~dg~l~Sgs~DgtIrlWD~-~g~~l~~l~---~H~~~V~sls~-dG~~LasGs~DgtIrlWD~ 486 (842)
+.++++.+++.++.++.++.| ++.. .|+--+.+. .+...+.++.+ ++..+++++.+|+|.-++-
T Consensus 252 ~~~v~~~~~~~~~~~g~~g~i-~~S~DgG~tW~~~~~~~~~~~~~~~v~~~~~~~~~~~G~~G~i~~~~~ 320 (327)
T 2xbg_A 252 FLDLAYRTPNEVWLAGGAGAL-LCSQDGGQTWQQDVDVKKVPSNFYKILFFSPDQGFILGQKGILLRYVT 320 (327)
T ss_dssp EEEEEESSSSCEEEEESTTCE-EEESSTTSSCEECGGGTTSSSCCCEEEEEETTEEEEECSTTEEEEECC
T ss_pred eEEEEecCCCEEEEEeCCCeE-EEeCCCCcccEEcCccCCCCCCeEEEEEECCCceEEEcCCceEEEEcC
Confidence 456677777888777778877 4544 354433333 12345667755 4567778888998887764
|
| >2f1n_A CDT B, cytolethal distending toxin subunit B; E.coli, DNAse I, microbatch; 1.73A {Escherichia coli} SCOP: d.151.1.1 | Back alignment and structure |
|---|
Probab=92.74 E-value=0.39 Score=49.52 Aligned_cols=39 Identities=26% Similarity=0.394 Sum_probs=29.6
Q ss_pred CCCCeeEEEEEEeCeEEEEEeecCcCCcchHHHHHHHHHHHHHhc
Q 003171 675 GNKGAVGLRVRVYDRIMCFVNCHFAAHLEAVNRRNADFDHVYRTM 719 (842)
Q Consensus 675 gnKG~v~i~~~i~~~~~~Fv~~HLaa~~~~~~~Rn~~~~~I~~~l 719 (842)
+....++|++ + .+.|.+.|+.|.-+ ..|.+..+.|.+-+
T Consensus 129 ~~Rp~lgiri---~-~~~ff~tHa~a~~g--~da~a~v~~I~~~~ 167 (262)
T 2f1n_A 129 GGRPLLGIRI---G-NDAFFTAHAIAMRN--NDAPALVEEVYNFF 167 (262)
T ss_dssp TCCCEEEEEE---T-TEEEEEEECCSSSS--CSHHHHHHHHHHHH
T ss_pred CCCceEEEEE---C-CEEEEEEEecCCCC--ccHHHHHHHHHHHH
Confidence 3788999888 2 59999999999733 34777787887753
|
| >3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=92.51 E-value=14 Score=40.13 Aligned_cols=103 Identities=15% Similarity=0.133 Sum_probs=59.3
Q ss_pred eEEEEECC-CCcE-EEEeCC-CeEEEEcCCCCeeeeeec-CCccEEEEEe--cCCEEEEEe-cCcEEEEEeCCCcccccc
Q 003171 422 TEALTTSI-DGMI-WTGGAN-GLLLQWDPNGNRLQDFQY-LPFAVQCLCT--FGSQIWVGY-MNGIVQVLDLEGNLLGGW 494 (842)
Q Consensus 422 v~al~~s~-dg~l-~Sgs~D-gtIrlWD~~g~~l~~l~~-H~~~V~sls~--dG~~LasGs-~DgtIrlWD~~g~~i~~l 494 (842)
...++++| +|.| |+-... +.|...+++|.....+.. .-..-+.|+. ++.+|+.+. ..+.|+.+|+.|...+++
T Consensus 204 P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~ 283 (386)
T 3v65_B 204 PRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAV 283 (386)
T ss_dssp EEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSCSCEEE
T ss_pred CcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCCeeEEE
Confidence 34566665 4455 444444 678888887765555432 2334556665 466666655 467899999886533322
Q ss_pred -cccccCEEEEEeCCCEEEEEc-CCCCeeecc
Q 003171 495 -VAHSSPVIKMAVGAGYIFTLA-NHGGIRGWN 524 (842)
Q Consensus 495 -~gH~~~V~sla~dg~~l~S~S-~DgtIrvWd 524 (842)
........+|+.++..++++. ..+.|...+
T Consensus 284 ~~~~~~~P~giav~~~~ly~td~~~~~V~~~~ 315 (386)
T 3v65_B 284 ISQGLPHPFAITVFEDSLYWTDWHTKSINSAN 315 (386)
T ss_dssp ECSSCSSEEEEEEETTEEEEEETTTTEEEEEE
T ss_pred EECCCCCceEEEEECCEEEEeeCCCCeEEEEE
Confidence 222334566766666666554 445565554
|
| >1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 | Back alignment and structure |
|---|
Probab=92.48 E-value=12 Score=39.30 Aligned_cols=103 Identities=13% Similarity=0.065 Sum_probs=60.4
Q ss_pred EEEEECC-CCcE-EEEeCC-CeEEEEcCCCCeeeeeec-CCccEEEEEec--CCEEEEEe-cCcEEEEEeCCCccccccc
Q 003171 423 EALTTSI-DGMI-WTGGAN-GLLLQWDPNGNRLQDFQY-LPFAVQCLCTF--GSQIWVGY-MNGIVQVLDLEGNLLGGWV 495 (842)
Q Consensus 423 ~al~~s~-dg~l-~Sgs~D-gtIrlWD~~g~~l~~l~~-H~~~V~sls~d--G~~LasGs-~DgtIrlWD~~g~~i~~l~ 495 (842)
..++++| +|.| |+.... +.|...+++|...+.+.. .-..-+.|+.| +.+|+.+. ..+.|...|.+|...+++.
T Consensus 123 ~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~~~~~~~~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~~~~~~~ 202 (316)
T 1ijq_A 123 RAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTIL 202 (316)
T ss_dssp EEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEE
T ss_pred ceEEeCCCCCEEEEEccCCCCeEEEEcCCCCCeEEEEECCCCCceEEEEeccCCEEEEEECCCCeEEEEecCCCceEEEe
Confidence 4566665 4555 443333 678888888766555432 23345666654 66776655 4679999999875444332
Q ss_pred c---cccCEEEEEeCCCEEEEEc-CCCCeeeccc
Q 003171 496 A---HSSPVIKMAVGAGYIFTLA-NHGGIRGWNV 525 (842)
Q Consensus 496 g---H~~~V~sla~dg~~l~S~S-~DgtIrvWd~ 525 (842)
. .-....+|+.++..++++. ..+.|...+.
T Consensus 203 ~~~~~~~~P~giav~~~~ly~~d~~~~~V~~~~~ 236 (316)
T 1ijq_A 203 EDEKRLAHPFSLAVFEDKVFWTDIINEAIFSANR 236 (316)
T ss_dssp ECTTTTSSEEEEEEETTEEEEEETTTTEEEEEET
T ss_pred ecCCccCCcEEEEEECCEEEEEECCCCeEEEEeC
Confidence 1 1233566776666666544 4456666553
|
| >4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=92.44 E-value=16 Score=40.54 Aligned_cols=107 Identities=10% Similarity=0.092 Sum_probs=58.5
Q ss_pred EEEecC----CEEEEecC-CCEEEEeCCCCccccccccccccCCCCCCCCCCeeeeeecCCCeEEEEEcCCCCEEEEEeC
Q 003171 137 TIVCTE----EQLWAGGE-NGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGHR 211 (842)
Q Consensus 137 ~l~~~~----~~l~~~~D-~~vrvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~V~~la~dpdg~~LaSGs~ 211 (842)
.|+.+. ..||.+.. +.|+++|+++..... +.. . .....+++++++|+++++-..
T Consensus 143 gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~------------------~~~--~-~~~P~giavd~dG~lyVad~~ 201 (433)
T 4hw6_A 143 RMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDI------------------KTT--N-IGQCADVNFTLNGDMVVVDDQ 201 (433)
T ss_dssp EEEECTTTTTCEEEEECBTSCEEEEETTTTEEEE------------------ECC--C-CSCEEEEEECTTCCEEEEECC
T ss_pred eEEEccccCCCEEEEEeCCCCEEEEECCCCEEEE------------------eec--C-CCCccEEEECCCCCEEEEcCC
Confidence 445553 57887543 899999986533211 000 1 335788999999995555432
Q ss_pred C---CcEEEE-ECCCCccCCCCCcceeEEecccCCcEEEEEEec-CCCEEEee-CCCcEEEEeCCCc
Q 003171 212 D---GRIMCW-KMNARLLDSDDGFGEVLSWQAHRGPVLSLCISS-YGDLWSGS-EGGGIKIWPWEAI 272 (842)
Q Consensus 212 D---GtIrlW-dl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~-dG~L~SgS-~DgtIrvWd~~t~ 272 (842)
. ..-.++ +...+ +.....+. .-..-..++++| +|.|+.+. .++.|+.++..++
T Consensus 202 ~~~~~~gv~~~~~~~~-------~~~~~~~~-~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g 260 (433)
T 4hw6_A 202 SSDTNTGIYLFTRASG-------FTERLSLC-NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATG 260 (433)
T ss_dssp SCTTSEEEEEECGGGT-------TCCEEEEE-ECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTC
T ss_pred CCcccceEEEEECCCC-------eecccccc-ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCC
Confidence 1 121222 22221 11111111 123345688999 78887554 5678888887643
|
| >1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A | Back alignment and structure |
|---|
Probab=91.88 E-value=0.37 Score=57.59 Aligned_cols=72 Identities=15% Similarity=0.214 Sum_probs=43.3
Q ss_pred EEEEECCC-CcE-EEEeCCCeEEEEcCCCCeeeeeecC---CccEEEEEecCCEE-EEEecCcEEEEEeCC-Ccccccc
Q 003171 423 EALTTSID-GMI-WTGGANGLLLQWDPNGNRLQDFQYL---PFAVQCLCTFGSQI-WVGYMNGIVQVLDLE-GNLLGGW 494 (842)
Q Consensus 423 ~al~~s~d-g~l-~Sgs~DgtIrlWD~~g~~l~~l~~H---~~~V~sls~dG~~L-asGs~DgtIrlWD~~-g~~i~~l 494 (842)
..|+++++ ++| |+-+..+.|..+|++|...+++... ......|++++.+| |+....+.|..+|.. |+.++++
T Consensus 543 nGlavd~~~~~LY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~~~P~glavd~~~lywtd~~~~~V~~~d~~~G~~~~~i 621 (699)
T 1n7d_A 543 NGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFEDKVFWTDIINEAIFSANRLTGSDVNLL 621 (699)
T ss_dssp CCEEECTTTCCEEEEETTTTEEEEECSSSSCCEEECCCSSSCSSCCCCEEETTEEEEECSTTTCEEEEETTTEEEEECC
T ss_pred cEEEEeccCCEEEEEecCCCeEEEEccCCCceEEEEecCCcCCCceEeEEECCEEEEEeCCCCeEEEEEccCCCceEEe
Confidence 35778875 456 4444567899999977554444321 12233556666644 454456889999864 6555444
|
| >4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A* | Back alignment and structure |
|---|
Probab=90.88 E-value=29 Score=40.49 Aligned_cols=102 Identities=10% Similarity=0.010 Sum_probs=55.9
Q ss_pred EEEEECC-CCcEEEEe--CCCeEEEEcCCCCeeeeeecCCccEEEEEec--CCEEEEEe-cCcEEEEEeCCCcccccccc
Q 003171 423 EALTTSI-DGMIWTGG--ANGLLLQWDPNGNRLQDFQYLPFAVQCLCTF--GSQIWVGY-MNGIVQVLDLEGNLLGGWVA 496 (842)
Q Consensus 423 ~al~~s~-dg~l~Sgs--~DgtIrlWD~~g~~l~~l~~H~~~V~sls~d--G~~LasGs-~DgtIrlWD~~g~~i~~l~g 496 (842)
..++++| +|.|+... ..+.|...+++|..++.+...-..-+.|+.| +++|+.+. ..+.|...|+.|...+.+..
T Consensus 126 ~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~~~l~~~~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~~~v~~~ 205 (628)
T 4a0p_A 126 RALALDPAEGFMYWTEWGGKPKIDRAAMDGSERTTLVPNVGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNREVIAD 205 (628)
T ss_dssp EEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEE
T ss_pred ccEEEccCCCeEEEeCCCCCCEEEEEeCCCCceEEEECCCCCcceEEEccccCEEEEEECCCCEEEEEcCCCCceEEeec
Confidence 4556665 45553332 1345666677665554444334455666654 55665554 35688888887643333333
Q ss_pred cccCEEEEEeCCCEEEEEcC-CCCeeecc
Q 003171 497 HSSPVIKMAVGAGYIFTLAN-HGGIRGWN 524 (842)
Q Consensus 497 H~~~V~sla~dg~~l~S~S~-DgtIrvWd 524 (842)
......+|+.++..++++.. .+.|...|
T Consensus 206 ~l~~P~glav~~~~ly~tD~~~~~I~~~d 234 (628)
T 4a0p_A 206 DLPHPFGLTQYQDYIYWTDWSRRSIERAN 234 (628)
T ss_dssp CCSCEEEEEEETTEEEEEETTTTEEEEEE
T ss_pred cCCCceEEEEECCEEEEecCCCCEEEEEE
Confidence 33345566665566665543 45555555
|
| >2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=88.34 E-value=27 Score=37.32 Aligned_cols=25 Identities=16% Similarity=0.320 Sum_probs=21.9
Q ss_pred EEEEEEecCCCEEEeeCCCcEEEEe
Q 003171 244 VLSLCISSYGDLWSGSEGGGIKIWP 268 (842)
Q Consensus 244 V~slafs~dG~L~SgS~DgtIrvWd 268 (842)
-.+|+|.|+|+|+.+..++.|++++
T Consensus 33 P~~ia~~pdG~l~V~e~~g~I~~i~ 57 (352)
T 2ism_A 33 PWALAFLPDGGMLIAERPGRIRLFR 57 (352)
T ss_dssp EEEEEECTTSCEEEEETTTEEEEEE
T ss_pred ceEEEEcCCCeEEEEeCCCeEEEEE
Confidence 4689999999988888889999988
|
| >3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli} | Back alignment and structure |
|---|
Probab=87.59 E-value=27 Score=35.75 Aligned_cols=73 Identities=14% Similarity=0.104 Sum_probs=46.0
Q ss_pred CeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcc--eeEEe----cccCCcEEEEEEecCCC-EEEeeCCCcEE
Q 003171 193 SVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFG--EVLSW----QAHRGPVLSLCISSYGD-LWSGSEGGGIK 265 (842)
Q Consensus 193 ~V~~la~dpdg~~LaSGs~DGtIrlWdl~~g~~~~~~~~~--~~~~l----~gH~~~V~slafs~dG~-L~SgS~DgtIr 265 (842)
-.-.+++.+++.++++--.++.+.+.++.... ... ....+ ..+....-+|+++|.++ ||.+.+....+
T Consensus 71 D~EGIa~~~~g~~~vs~E~~~~l~~~~v~~~~-----~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~ 145 (255)
T 3qqz_A 71 DLETIEYIGDNQFVISDERDYAIYVISLTPNS-----EVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIE 145 (255)
T ss_dssp SEEEEEECSTTEEEEEETTTTEEEEEEECTTC-----CEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEE
T ss_pred ChHHeEEeCCCEEEEEECCCCcEEEEEcCCCC-----eeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCce
Confidence 45567777777766665566777777766531 001 11111 12345678999999885 88888777777
Q ss_pred EEeCC
Q 003171 266 IWPWE 270 (842)
Q Consensus 266 vWd~~ 270 (842)
||.++
T Consensus 146 i~~~~ 150 (255)
T 3qqz_A 146 VYKVN 150 (255)
T ss_dssp EEEEE
T ss_pred EEEEc
Confidence 77764
|
| >3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B | Back alignment and structure |
|---|
Probab=87.14 E-value=32 Score=36.14 Aligned_cols=103 Identities=9% Similarity=0.023 Sum_probs=56.9
Q ss_pred EEEEECC-CCcEEEEe--CCCeEEEEcCCCCeeeeeec-CCccEEEEEe--cCCEEEEEe-cCcEEEEEeCCCccccccc
Q 003171 423 EALTTSI-DGMIWTGG--ANGLLLQWDPNGNRLQDFQY-LPFAVQCLCT--FGSQIWVGY-MNGIVQVLDLEGNLLGGWV 495 (842)
Q Consensus 423 ~al~~s~-dg~l~Sgs--~DgtIrlWD~~g~~l~~l~~-H~~~V~sls~--dG~~LasGs-~DgtIrlWD~~g~~i~~l~ 495 (842)
..++++| +|.|+... ..+.|...+++|...+.+.. .-..-+.|+. ++.+|+.+. ..+.|+.+|+.|...+++.
T Consensus 125 ~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~ 204 (318)
T 3sov_A 125 RAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVV 204 (318)
T ss_dssp EEEEEEGGGTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEE
T ss_pred cEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCeEEEEECCCCCccEEEEeccCCEEEEEECCCCEEEEEcCCCCceEEEe
Confidence 3455554 34543333 24567777777755444421 1233455655 466666655 4678999998865433332
Q ss_pred -ccccCEEEEEeCCCEEEEEc-CCCCeeeccc
Q 003171 496 -AHSSPVIKMAVGAGYIFTLA-NHGGIRGWNV 525 (842)
Q Consensus 496 -gH~~~V~sla~dg~~l~S~S-~DgtIrvWd~ 525 (842)
+......+|+.+++.+++.. ..+.|...+.
T Consensus 205 ~~~~~~P~glav~~~~lywtd~~~~~V~~~~~ 236 (318)
T 3sov_A 205 KGSLPHPFALTLFEDILYWTDWSTHSILACNK 236 (318)
T ss_dssp CSCCSCEEEEEEETTEEEEEETTTTEEEEEET
T ss_pred cCCCCCceEEEEeCCEEEEEecCCCeEEEEEC
Confidence 23344566776666666544 4455666654
|
| >1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A | Back alignment and structure |
|---|
Probab=86.22 E-value=4.9 Score=47.74 Aligned_cols=86 Identities=10% Similarity=-0.008 Sum_probs=47.3
Q ss_pred CeEEEEcCCCCeeeeeec-CCccEEEEEe--cCCEEEEEe-cCcEEEEEeCCCcccccccc---cccCEEEEEeCCCEEE
Q 003171 440 GLLLQWDPNGNRLQDFQY-LPFAVQCLCT--FGSQIWVGY-MNGIVQVLDLEGNLLGGWVA---HSSPVIKMAVGAGYIF 512 (842)
Q Consensus 440 gtIrlWD~~g~~l~~l~~-H~~~V~sls~--dG~~LasGs-~DgtIrlWD~~g~~i~~l~g---H~~~V~sla~dg~~l~ 512 (842)
+.|.+.+++|...+.+.. .-..-+.|+. ++.+|+.+. ..+.|.++|+.|...+++.. .-....+|+.+++.|+
T Consensus 519 ~~I~~~~~dG~~~~~l~~~~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~~~P~glavd~~~ly 598 (699)
T 1n7d_A 519 AKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFEDKVF 598 (699)
T ss_dssp CCEEBCCSSSCCCCEESCSSCSSCCCEEECTTTCCEEEEETTTTEEEEECSSSSCCEEECCCSSSCSSCCCCEEETTEEE
T ss_pred CeEEEEeCCCCCeeEEEeCCCCCccEEEEeccCCEEEEEecCCCeEEEEccCCCceEEEEecCCcCCCceEeEEECCEEE
Confidence 567777777654444321 1223344555 455555444 57899999998643333321 1122345566666766
Q ss_pred EEc-CCCCeeeccc
Q 003171 513 TLA-NHGGIRGWNV 525 (842)
Q Consensus 513 S~S-~DgtIrvWd~ 525 (842)
++. ..+.|...+.
T Consensus 599 wtd~~~~~V~~~d~ 612 (699)
T 1n7d_A 599 WTDIINEAIFSANR 612 (699)
T ss_dssp EECSTTTCEEEEET
T ss_pred EEeCCCCeEEEEEc
Confidence 555 4456776663
|
| >3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=83.24 E-value=66 Score=36.30 Aligned_cols=61 Identities=8% Similarity=-0.015 Sum_probs=40.6
Q ss_pred CeEEEEEcC-CCCEEEEEeCC-CcEEEEECCCCccCCCCCcceeEEecc----cCCcEEEEEE-------ecCCC-EEEe
Q 003171 193 SVMCMVGDE-ASGVVWSGHRD-GRIMCWKMNARLLDSDDGFGEVLSWQA----HRGPVLSLCI-------SSYGD-LWSG 258 (842)
Q Consensus 193 ~V~~la~dp-dg~~LaSGs~D-GtIrlWdl~~g~~~~~~~~~~~~~l~g----H~~~V~slaf-------s~dG~-L~Sg 258 (842)
....|++|| +.+.|+.+..+ +.|++.|+.++ .+.++.. .......|+| +++|+ |+.+
T Consensus 140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~---------~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyva 210 (496)
T 3kya_A 140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNR---------MLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVA 210 (496)
T ss_dssp SEEEEEEETTEEEEEEEEEETEEEEEEEETTTT---------EEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEE
T ss_pred CCCEEEEccCCCCEEEEEECCCCeEEEEECCCC---------EEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEE
Confidence 467899999 45666666554 56888888874 3333321 2235899999 99998 7766
Q ss_pred eCCC
Q 003171 259 SEGG 262 (842)
Q Consensus 259 S~Dg 262 (842)
...+
T Consensus 211 d~~~ 214 (496)
T 3kya_A 211 IDYD 214 (496)
T ss_dssp ECCC
T ss_pred eCCC
Confidence 5543
|
| >3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A* | Back alignment and structure |
|---|
Probab=81.82 E-value=83 Score=36.46 Aligned_cols=73 Identities=16% Similarity=0.129 Sum_probs=47.1
Q ss_pred CCeEEEEEcCCCC-EEEEEeCCCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCC-CE-EEeeCCCcEEEEe
Q 003171 192 SSVMCMVGDEASG-VVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYG-DL-WSGSEGGGIKIWP 268 (842)
Q Consensus 192 ~~V~~la~dpdg~-~LaSGs~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG-~L-~SgS~DgtIrvWd 268 (842)
..+..|++++.++ +.|+=...+.|..+++++.. .....+..--.....||+++.+ +| |+-+..+.|.+-+
T Consensus 40 ~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~-------~~~~v~~~~~~~P~GlAvD~~~~~ly~~d~~~~~I~v~~ 112 (619)
T 3s94_A 40 EDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTE-------SVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSN 112 (619)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEEC------------CEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred CceEEEEEEeCCCEEEEEECCCCeEEEEEccCCC-------ceEEEEeCCCCCcCeEEEEecCCEEEEEeCCCCEEEEEE
Confidence 3577899998555 55565567889999987641 1111222222468899999955 45 5777788999998
Q ss_pred CCC
Q 003171 269 WEA 271 (842)
Q Consensus 269 ~~t 271 (842)
+++
T Consensus 113 ~dG 115 (619)
T 3s94_A 113 LDG 115 (619)
T ss_dssp TTS
T ss_pred CCC
Confidence 865
|
| >2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3 | Back alignment and structure |
|---|
Probab=81.21 E-value=53 Score=33.78 Aligned_cols=86 Identities=12% Similarity=0.088 Sum_probs=48.3
Q ss_pred CCCCc-EEEE-eCCCeEEEEcCC--CCe--eeeeecCCccEE--EEEecCCEEEEEe-cCcEEEEEeCCCcc--cccccc
Q 003171 428 SIDGM-IWTG-GANGLLLQWDPN--GNR--LQDFQYLPFAVQ--CLCTFGSQIWVGY-MNGIVQVLDLEGNL--LGGWVA 496 (842)
Q Consensus 428 s~dg~-l~Sg-s~DgtIrlWD~~--g~~--l~~l~~H~~~V~--sls~dG~~LasGs-~DgtIrlWD~~g~~--i~~l~g 496 (842)
++|+. |+.+ +..+.|..+|.+ |+. .+.+.. ..... ++.++|.. |++. ..+.|.++|.+|+. +.....
T Consensus 175 s~dg~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~~-~~~P~gi~vd~dG~l-~va~~~~~~V~~~~~~G~~~~~~~~~~ 252 (306)
T 2p4o_A 175 KRFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVE-QTNIDDFAFDVEGNL-YGATHIYNSVVRIAPDRSTTIIAQAEQ 252 (306)
T ss_dssp EEETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEE-SCCCSSEEEBTTCCE-EEECBTTCCEEEECTTCCEEEEECGGG
T ss_pred CcCCCEEEEEeCCCCEEEEEEeCCCCCCCccEEEec-cCCCCCeEECCCCCE-EEEeCCCCeEEEECCCCCEEEEeeccc
Confidence 66764 6544 456789999984 332 122211 01112 33446754 5544 47889999998876 323433
Q ss_pred cccCEEEEEeC-----CCEEEEEc
Q 003171 497 HSSPVIKMAVG-----AGYIFTLA 515 (842)
Q Consensus 497 H~~~V~sla~d-----g~~l~S~S 515 (842)
......+++++ ++.|+-++
T Consensus 253 ~~~~p~~~a~~g~~~d~~~LyVt~ 276 (306)
T 2p4o_A 253 GVIGSTAVAFGQTEGDCTAIYVVT 276 (306)
T ss_dssp TCTTEEEEEECCSTTTTTEEEEEE
T ss_pred ccCCceEEEEecccCCCCEEEEEC
Confidence 33567888754 45555443
|
| >3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A | Back alignment and structure |
|---|
Probab=80.50 E-value=14 Score=41.06 Aligned_cols=121 Identities=7% Similarity=0.058 Sum_probs=74.5
Q ss_pred CceeEEEEecCCEEEEecCCCEEEEeCCCCccccccccccccCCCCCCCCCCeeeeeecCCCeEEEEEcCCCCEEEEEeC
Q 003171 132 GCFLRTIVCTEEQLWAGGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGHR 211 (842)
Q Consensus 132 ~~~~~~l~~~~~~l~~~~D~~vrvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~V~~la~dpdg~~LaSGs~ 211 (842)
+++. .+.-.+..++...++.||.-++........ - ..| ..+. ...|.-+..+|+|++||.-+.
T Consensus 23 ~R~~-~~~~n~t~i~~a~~n~iR~~~i~~~~~Yk~------------L-~~~--~~i~-f~~i~qlvlSpsG~lLAl~g~ 85 (452)
T 3pbp_A 23 PRYI-FSSQNGTRIVFIQDNIIRWYNVLTDSLYHS------------L-NFS--RHLV-LDDTFHVISSTSGDLLCLFND 85 (452)
T ss_dssp CEEE-EEETTTTEEEEEETTEEEEEETTTCSSCEE------------E-ECT--TTCC-CCTTCEEEECTTSSEEEEECS
T ss_pred CcEE-EEEcCCCEEEEEECCEEEEEECCCCCcceE------------E-ecC--cccc-cCceeEEEECCCCCEEEEecC
Confidence 3444 233346699999999999999863211100 0 000 0001 124566899999999998755
Q ss_pred CCcEEEEECCCCccCCC-----CCcceeEEec-c-----cCCcEEEEEEecCC----CEEEeeCCCcEEEEeCCC
Q 003171 212 DGRIMCWKMNARLLDSD-----DGFGEVLSWQ-A-----HRGPVLSLCISSYG----DLWSGSEGGGIKIWPWEA 271 (842)
Q Consensus 212 DGtIrlWdl~~g~~~~~-----~~~~~~~~l~-g-----H~~~V~slafs~dG----~L~SgS~DgtIrvWd~~t 271 (842)
.+|.|-.+..+..... ..++ ..++. + ...+|..+.|+|-| .|++=..|++||+||+..
T Consensus 86 -~~V~Vv~LP~~~~~~~~~~~~~~~q-~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~ 158 (452)
T 3pbp_A 86 -NEIFVMEVPWGYSNVEDVSIQDAFQ-IFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILN 158 (452)
T ss_dssp -SEEEEEECCTTCSCCCCHHHHHTTE-EEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTC
T ss_pred -CeEEEEEecCccccCcccccccccc-eeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEccc
Confidence 4777888774310000 1111 22332 1 35789999999975 388889999999999964
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 842 | ||||
| d1i9za_ | 345 | d.151.1.2 (A:) Synaptojanin, IPP5C domain {Fission | 2e-58 | |
| d2imqx1 | 280 | d.151.1.2 (X:3-282) Salivary nitrophorin {Bedbug ( | 3e-27 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 1e-05 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 2e-04 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 0.003 | |
| d1pgua2 | 287 | b.69.4.1 (A:327-613) Actin interacting protein 1 { | 1e-04 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 2e-04 | |
| d1p22a2 | 293 | b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be | 4e-04 | |
| d1k8kc_ | 371 | b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 | 0.001 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 0.001 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 0.002 |
| >d1i9za_ d.151.1.2 (A:) Synaptojanin, IPP5C domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 345 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: DNase I-like superfamily: DNase I-like family: Inositol polyphosphate 5-phosphatase (IPP5) domain: Synaptojanin, IPP5C domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Score = 201 bits (511), Expect = 2e-58
Identities = 77/304 (25%), Positives = 126/304 (41%), Gaps = 47/304 (15%)
Query: 530 PLDSILCKELAGKEFLYTRMENLKILAGTWNVGQGRASQDALISWLGSAASDVG-IVVVG 588
P+ + EL +E ++ +N+KI ++N+ A+ L +WL + + I VVG
Sbjct: 3 PIHEYVNHELRKRENEFSEHKNVKIFVASYNLNGCSATTK-LENWLFPENTPLADIYVVG 61
Query: 589 LQEVEMGAGFLAMSAAKETVGLEGSAVGHWWLDMIG----KILDDGSTFERVGSRQLAGL 644
QE+ + + V A W + G + ++ S QL G
Sbjct: 62 FQEI--------VQLTPQQVISADPAKRREWESCVKRLLNGKCTSGPGYVQLRSGQLVGT 113
Query: 645 LIAVWVRKNLKDYVGDVDVAAVPCGFGRAIGNKGAVGLRVRVYDRIMCFVNCHFAAHLEA 704
+ ++ +++ + +V+ G G GNKGAV +R D +CF+ H AA
Sbjct: 114 ALMIFCKESCLPSIKNVEGTVKKTGLGGVSGNKGAVAIRFDYEDTGLCFITSHLAAGYTN 173
Query: 705 VNRRNADFDHVYRTMTFCRPSNLCSAAAAGASSVVQMLRSTNPLSGLTVEGVPELSEADM 764
+ R+ D+ + + F R ++ D
Sbjct: 174 YDERDHDYRTIASGLRFRRGRSI--------------------------------FNHDY 201
Query: 765 VIFLGDFNYRLDGITYDEARDFISQRCFDWLRERDQLRAEMEAGNVFQGMREADIKFPPT 824
V++ GDFNYR+ +TY+E I+Q +L E DQL +M G VF E I FPPT
Sbjct: 202 VVWFGDFNYRIS-LTYEEVVPCIAQGKLSYLFEYDQLNKQMLTGKVFPFFSELPITFPPT 260
Query: 825 YKFE 828
YKF+
Sbjct: 261 YKFD 264
|
| >d2imqx1 d.151.1.2 (X:3-282) Salivary nitrophorin {Bedbug (Cimex lectularius) [TaxId: 79782]} Length = 280 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: DNase I-like superfamily: DNase I-like family: Inositol polyphosphate 5-phosphatase (IPP5) domain: Salivary nitrophorin species: Bedbug (Cimex lectularius) [TaxId: 79782]
Score = 110 bits (275), Expect = 3e-27
Identities = 41/282 (14%), Positives = 80/282 (28%), Gaps = 60/282 (21%)
Query: 551 NLKILAGTWNVGQGRASQD--ALISWLGSAASDVGIVVVGLQEVEMGAGFLAMSAAKETV 608
L + +WN G RA + L+ D ++ V +Q
Sbjct: 4 QLSVHTVSWNSGHERAPTNLEELLGLNSGETPD--VIAVAVQGFGFQT------------ 49
Query: 609 GLEGSAVGHWWLDMIGKILDDGSTFERVGSRQLAGLLIAVWVRKNLKDYVGDVDVAAVPC 668
+ G + +L + ++ + + + V+ + D +
Sbjct: 50 --DKPQQGPACVKNFQSLLTS-KGYTKLKNTITETMGLTVYCLEKHLDQ--NTLKNETII 104
Query: 669 GFGRAIGNKGAVGLRVRVYDRIMCFVNCHFAAHLEAVNRRNADFDHVYRTMTFCRPSNLC 728
G + +Y++ F + +D PS
Sbjct: 105 VTVDDQKKSGGIVTSFTIYNKRFSFTTSRMSDEDVTSTNTKYAYDTRLDYSKKDDPS--- 161
Query: 729 SAAAAGASSVVQMLRSTNPLSGLTVEGVPELSEADMVIFLGDFNYRLDGITYDEARDFIS 788
D + ++GD N R++ A+ +
Sbjct: 162 ----------------------------------DFLFWIGDLNVRVE-TNATHAKSLVD 186
Query: 789 QRCFDWLRERDQLRAEMEAGNVFQGMREADIKFPPTYKFEKH 830
Q D L DQL+ + + +F G E + F PTYKF+ +
Sbjct: 187 QNNIDGLMAFDQLK-KAKEQKLFDGWTEPQVTFKPTYKFKPN 227
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 45.9 bits (107), Expect = 1e-05
Identities = 39/308 (12%), Positives = 87/308 (28%), Gaps = 17/308 (5%)
Query: 233 EVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVE 291
E + HR PV + + S SE IK+W +E + +LK + +
Sbjct: 9 EKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFD 68
Query: 292 RSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGFLS-----FALWDARTRELLK 346
S L S + + + + H S+ + +
Sbjct: 69 HSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMW 128
Query: 347 VFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAV 406
++ ++ T I + S + + + + V
Sbjct: 129 EVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVV 188
Query: 407 RRVA-----AKGGFGDDNRRTEALTTSIDGMIWTGGANGLLLQWDPN-GNRLQDFQYLPF 460
++ + + + + +G + + WD + G L
Sbjct: 189 ECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDN 248
Query: 461 AVQCLC--TFGSQIWVGYMNGIVQVLDLE-GNLLGGWVAHSSPVIKMAVGA--GYIFTLA 515
V+ + + G I + ++V D + + AH V + Y+ T +
Sbjct: 249 WVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGS 308
Query: 516 NHGGIRGW 523
++ W
Sbjct: 309 VDQTVKVW 316
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 41.7 bits (96), Expect = 2e-04
Identities = 13/77 (16%), Positives = 25/77 (32%), Gaps = 9/77 (11%)
Query: 192 SSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISS 251
+ V ++ + S D + W + + + AH V SL
Sbjct: 248 NWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRC--------MKTLNAHEHFVTSLDFHK 299
Query: 252 YGD-LWSGSEGGGIKIW 267
+ +GS +K+W
Sbjct: 300 TAPYVVTGSVDQTVKVW 316
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 38.2 bits (87), Expect = 0.003
Identities = 14/94 (14%), Positives = 34/94 (36%), Gaps = 9/94 (9%)
Query: 187 SVKGVSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLS 246
S+ + + + SG RD I W ++ + +++ H V
Sbjct: 201 SISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMC--------LMTLVGHDNWVRG 252
Query: 247 LCISSYGD-LWSGSEGGGIKIWPWEAIEKALSLK 279
+ S G + S ++ +++W ++ +L
Sbjct: 253 VLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLN 286
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 42.3 bits (97), Expect = 1e-04
Identities = 13/76 (17%), Positives = 23/76 (30%), Gaps = 7/76 (9%)
Query: 192 SSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISS 251
+ + +V +G D I + + + AH+ V +L +
Sbjct: 216 AEKGANEEEIEEDLVATGSLDTNIFIY-------SVKRPMKIIKALNAHKDGVNNLLWET 268
Query: 252 YGDLWSGSEGGGIKIW 267
L S IK W
Sbjct: 269 PSTLVSSGADACIKRW 284
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 41.6 bits (96), Expect = 2e-04
Identities = 13/77 (16%), Positives = 27/77 (35%), Gaps = 9/77 (11%)
Query: 192 SSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISS 251
+ + ++ ++ +G+ D W D+ H V L ++
Sbjct: 271 CGITSVSFSKSGRLLLAGYDDFNCNVW-------DALKA-DRAGVLAGHDNRVSCLGVTD 322
Query: 252 YGD-LWSGSEGGGIKIW 267
G + +GS +KIW
Sbjct: 323 DGMAVATGSWDSFLKIW 339
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 40.6 bits (93), Expect = 4e-04
Identities = 17/63 (26%), Positives = 25/63 (39%), Gaps = 2/63 (3%)
Query: 206 VWSGHRDGRIMCWKMN-ARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGDLWSGSEGGGI 264
+ SG DG+I W + A + G + + H G V L + + S S I
Sbjct: 231 IVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFDEFQ-IVSSSHDDTI 289
Query: 265 KIW 267
IW
Sbjct: 290 LIW 292
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Score = 39.5 bits (90), Expect = 0.001
Identities = 8/81 (9%), Positives = 26/81 (32%), Gaps = 7/81 (8%)
Query: 190 GVSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCI 249
V + C ++ + + + ++ S + + +V + H G V +
Sbjct: 6 LVEPISCHAWNKDRTQIAICPNNHEVHIYEK------SGNKWVQVHELKEHNGQVTGVDW 59
Query: 250 SSYGD-LWSGSEGGGIKIWPW 269
+ + + + +W
Sbjct: 60 APDSNRIVTCGTDRNAYVWTL 80
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 39.4 bits (90), Expect = 0.001
Identities = 11/63 (17%), Positives = 20/63 (31%), Gaps = 10/63 (15%)
Query: 206 VWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGI 264
S +D + W+ +G + VLS IS + +GS
Sbjct: 280 FVSTGKDNLLNAWRTP---------YGASIFQSKESSSVLSCDISVDDKYIVTGSGDKKA 330
Query: 265 KIW 267
++
Sbjct: 331 TVY 333
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 39.4 bits (90), Expect = 0.002
Identities = 18/86 (20%), Positives = 35/86 (40%), Gaps = 15/86 (17%)
Query: 194 VMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYG 253
V+ + + + SG +D ++ W D G +L Q HR V+S+ +++
Sbjct: 311 VLSVATTQNDEYILSGSKDRGVLFW-------DKKSG-NPLLMLQGHRNSVISVAVANGS 362
Query: 254 D-------LWSGSEGGGIKIWPWEAI 272
+GS +IW ++ I
Sbjct: 363 SLGPEYNVFATGSGDCKARIWKYKKI 388
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 842 | |||
| d1i9za_ | 345 | Synaptojanin, IPP5C domain {Fission yeast (Schizos | 100.0 | |
| d1vyhc1 | 317 | Platelet-activating factor acetylhydrolase IB subu | 100.0 | |
| d1nr0a1 | 311 | Actin interacting protein 1 {Nematode (Caenorhabdi | 99.98 | |
| d1erja_ | 388 | Tup1, C-terminal domain {Baker's yeast (Saccharomy | 99.97 | |
| d1gxra_ | 337 | Groucho/tle1, C-terminal domain {Human (Homo sapie | 99.97 | |
| d1nr0a2 | 299 | Actin interacting protein 1 {Nematode (Caenorhabdi | 99.97 | |
| d1tbga_ | 340 | beta1-subunit of the signal-transducing G protein | 99.97 | |
| d1nexb2 | 355 | Cdc4 propeller domain {Baker's yeast (Saccharomyce | 99.96 | |
| d2ovrb2 | 342 | F-box/WD repeat-containing protein 7, FBXW7 {Human | 99.96 | |
| d1p22a2 | 293 | F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom | 99.96 | |
| d1vyhc1 | 317 | Platelet-activating factor acetylhydrolase IB subu | 99.95 | |
| d1gxra_ | 337 | Groucho/tle1, C-terminal domain {Human (Homo sapie | 99.95 | |
| d1nr0a1 | 311 | Actin interacting protein 1 {Nematode (Caenorhabdi | 99.95 | |
| d1pgua2 | 287 | Actin interacting protein 1 {Baker's yeast (Saccha | 99.95 | |
| d1k8kc_ | 371 | Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur | 99.95 | |
| d1k8kc_ | 371 | Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur | 99.95 | |
| d1nexb2 | 355 | Cdc4 propeller domain {Baker's yeast (Saccharomyce | 99.95 | |
| d1erja_ | 388 | Tup1, C-terminal domain {Baker's yeast (Saccharomy | 99.95 | |
| d2imqx1 | 280 | Salivary nitrophorin {Bedbug (Cimex lectularius) [ | 99.94 | |
| d1pgua1 | 325 | Actin interacting protein 1 {Baker's yeast (Saccha | 99.94 | |
| d1tbga_ | 340 | beta1-subunit of the signal-transducing G protein | 99.92 | |
| d2ovrb2 | 342 | F-box/WD repeat-containing protein 7, FBXW7 {Human | 99.92 | |
| d1sq9a_ | 393 | Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac | 99.92 | |
| d1yfqa_ | 342 | Cell cycle arrest protein BUB3 {Baker's yeast (Sac | 99.92 | |
| d1nr0a2 | 299 | Actin interacting protein 1 {Nematode (Caenorhabdi | 99.91 | |
| d1sq9a_ | 393 | Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac | 99.9 | |
| d1pgua1 | 325 | Actin interacting protein 1 {Baker's yeast (Saccha | 99.9 | |
| d1yfqa_ | 342 | Cell cycle arrest protein BUB3 {Baker's yeast (Sac | 99.87 | |
| d1p22a2 | 293 | F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom | 99.87 | |
| d1k32a3 | 360 | Tricorn protease domain 2 {Archaeon Thermoplasma a | 99.85 | |
| d1pgua2 | 287 | Actin interacting protein 1 {Baker's yeast (Saccha | 99.8 | |
| d1qksa2 | 432 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.8 | |
| d1hzua2 | 426 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.8 | |
| d1l0qa2 | 301 | Surface layer protein {Archaeon Methanosarcina maz | 99.76 | |
| d1hzua2 | 426 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.76 | |
| d1k32a3 | 360 | Tricorn protease domain 2 {Archaeon Thermoplasma a | 99.73 | |
| d1pbyb_ | 337 | Quinohemoprotein amine dehydrogenase B chain {Para | 99.7 | |
| d1qksa2 | 432 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.64 | |
| d1jmxb_ | 346 | Quinohemoprotein amine dehydrogenase B chain {Pseu | 99.61 | |
| d1pbyb_ | 337 | Quinohemoprotein amine dehydrogenase B chain {Para | 99.61 | |
| d1l0qa2 | 301 | Surface layer protein {Archaeon Methanosarcina maz | 99.53 | |
| d2bbkh_ | 355 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.52 | |
| d2madh_ | 373 | Methylamine dehydrogenase, H-chain {Gram negative | 99.49 | |
| d2madh_ | 373 | Methylamine dehydrogenase, H-chain {Gram negative | 99.45 | |
| d1ri6a_ | 333 | Putative isomerase YbhE {Escherichia coli [TaxId: | 99.42 | |
| d2bbkh_ | 355 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.33 | |
| d1jmxb_ | 346 | Quinohemoprotein amine dehydrogenase B chain {Pseu | 99.31 | |
| d1ri6a_ | 333 | Putative isomerase YbhE {Escherichia coli [TaxId: | 99.31 | |
| d1mdah_ | 368 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.1 | |
| d2bgra1 | 470 | Dipeptidyl peptidase IV/CD26, N-terminal domain {P | 98.96 | |
| d1mdah_ | 368 | Methylamine dehydrogenase, H-chain {Paracoccus den | 98.87 | |
| d1qnia2 | 441 | Nitrous oxide reductase, N-terminal domain {Pseudo | 98.43 | |
| d2ddra1 | 299 | Sphingomyelin phosphodiesterase C {Bacillus cereus | 98.39 | |
| d2p4oa1 | 302 | Hypothetical protein All0351 homologue {Nostoc pun | 98.37 | |
| d2bgra1 | 470 | Dipeptidyl peptidase IV/CD26, N-terminal domain {P | 98.33 | |
| d1zwxa1 | 293 | Sphingomyelin phosphodiesterase C {Listeria ivanov | 98.32 | |
| d1qnia2 | 441 | Nitrous oxide reductase, N-terminal domain {Pseudo | 98.28 | |
| d1q7fa_ | 279 | Brain tumor cg10719-pa {Fruit fly (Drosophila mela | 98.24 | |
| d2dg1a1 | 319 | Lactonase Drp35 {Staphylococcus aureus [TaxId: 128 | 97.72 | |
| d2hqsa1 | 269 | TolB, C-terminal domain {Escherichia coli [TaxId: | 97.6 | |
| d2dg1a1 | 319 | Lactonase Drp35 {Staphylococcus aureus [TaxId: 128 | 97.57 | |
| d2ghsa1 | 295 | Regucalcin {Agrobacterium tumefaciens [TaxId: 358] | 97.48 | |
| d1wdua_ | 228 | Endonuclease domain of TRAS1 retrotransposon (ORF2 | 97.43 | |
| d1pjxa_ | 314 | Diisopropylfluorophosphatase (phosphotriesterase, | 97.42 | |
| d1rwia_ | 260 | Serine/threonine-protein kinase PknD {Mycobacteriu | 97.39 | |
| d1pjxa_ | 314 | Diisopropylfluorophosphatase (phosphotriesterase, | 97.32 | |
| d1q7fa_ | 279 | Brain tumor cg10719-pa {Fruit fly (Drosophila mela | 97.32 | |
| d1vyba_ | 236 | Endonuclease domain of LINE-1 reverse transcriptas | 97.19 | |
| d2p4oa1 | 302 | Hypothetical protein All0351 homologue {Nostoc pun | 97.14 | |
| d1jofa_ | 365 | 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu | 97.02 | |
| d2f1na1 | 250 | Cytolethal distending toxin subunit B {Escherichia | 96.98 | |
| d1rwia_ | 260 | Serine/threonine-protein kinase PknD {Mycobacteriu | 96.94 | |
| d1k32a2 | 281 | Tricorn protease N-terminal domain {Archaeon Therm | 96.94 | |
| d1jofa_ | 365 | 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu | 96.84 | |
| d2a40b1 | 260 | Deoxyribonuclease I {Cow (Bos taurus) [TaxId: 9913 | 96.44 | |
| d2ghsa1 | 295 | Regucalcin {Agrobacterium tumefaciens [TaxId: 358] | 96.17 | |
| d1sr4b_ | 261 | Cytolethal distending toxin subunit B {Haemophilus | 95.66 | |
| d2hqsa1 | 269 | TolB, C-terminal domain {Escherichia coli [TaxId: | 94.7 | |
| d1hd7a_ | 275 | DNA repair endonuclease Hap1 {Human (Homo sapiens) | 89.7 | |
| d1akoa_ | 268 | DNA-repair enzyme exonuclease III {Escherichia col | 88.63 | |
| d1xfda1 | 465 | Dipeptidyl aminopeptidase-like protein 6, DPP6, N- | 86.41 | |
| d1npea_ | 263 | Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | 86.09 | |
| d1k32a2 | 281 | Tricorn protease N-terminal domain {Archaeon Therm | 81.51 |
| >d1i9za_ d.151.1.2 (A:) Synaptojanin, IPP5C domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: DNase I-like superfamily: DNase I-like family: Inositol polyphosphate 5-phosphatase (IPP5) domain: Synaptojanin, IPP5C domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=100.00 E-value=7.8e-55 Score=479.82 Aligned_cols=267 Identities=29% Similarity=0.495 Sum_probs=233.2
Q ss_pred CCCCcchhhhhhcccccccccccceeEEEEEEEeCCCCCCcccccccccCC-CCCceEEEEEeecc-cCccchhhhhhhh
Q 003171 528 PGPLDSILCKELAGKEFLYTRMENLKILAGTWNVGQGRASQDALISWLGSA-ASDVGIVVVGLQEV-EMGAGFLAMSAAK 605 (842)
Q Consensus 528 ~~~~d~~l~~~l~~r~~~y~~~~~~~i~~~twNv~~~~~~~~~l~~~l~~~-~~~~di~viglQE~-~~~~~~~~~~~~~ 605 (842)
|+|++.++.++|.+++.+|+...+++|+++|||||+.+|+ ++|.+||... ...||||||||||+ ++.++.+.
T Consensus 1 ~d~~~~~~~~~l~~r~~~~~~~~~l~I~v~TWNv~~~~~~-~~l~~~l~~~~~~~~DI~viglQEi~~~~~~~~~----- 74 (345)
T d1i9za_ 1 YDPIHEYVNHELRKRENEFSEHKNVKIFVASYNLNGCSAT-TKLENWLFPENTPLADIYVVGFQEIVQLTPQQVI----- 74 (345)
T ss_dssp CCHHHHHHHHHHHHTGGGTEEEEEEEEEEEEEECTTCCCC-SCCHHHHSCSSSCCCSEEEEEEECSSCCC----------
T ss_pred CCcHHHHHHHHHHHHHHhhcCCCceEEEEEEEcCCCccCC-cchHHhhccCCCCCCCEEEEEcccCCccchhhhc-----
Confidence 5788899999999999999999999999999999988875 5799999753 35589999999998 56543321
Q ss_pred hhcccCCCcchhhHHHHHhhhcc----CCCceEEEeeeeceeeEEEEEEeccccCccCceeeceeecccCcccCCCCeeE
Q 003171 606 ETVGLEGSAVGHWWLDMIGKILD----DGSTFERVGSRQLAGLLIAVWVRKNLKDYVGDVDVAAVPCGFGRAIGNKGAVG 681 (842)
Q Consensus 606 ~~~~~~~~~~~~~w~~~l~~~l~----~~~~y~~v~s~~l~g~~l~vf~r~~~~~~i~~v~~~~v~~G~~~~~gnKG~v~ 681 (842)
.+.+...+.|.+.+...++ .+..|++|.+.+|+|+.|+||+|+++.++|++|+++.+++|++|.+||||||+
T Consensus 75 ----~~~~~~~~~w~~~~~~~~~~~~~~~~~Y~~v~~~~~~g~~l~vf~r~~~~~~i~~v~~~~~~~g~~g~~gnKGaV~ 150 (345)
T d1i9za_ 75 ----SADPAKRREWESCVKRLLNGKCTSGPGYVQLRSGQLVGTALMIFCKESCLPSIKNVEGTVKKTGLGGVSGNKGAVA 150 (345)
T ss_dssp ----CCCHHHHHHHHHHHHHHHHHTCCSSCCEEEEEEEEETTEEEEEEEEGGGGGGEEEEEEEEEECCCC----CCEEEE
T ss_pred ----ccCchhhHHHHHHHHHhccccccCCCCeEEEEEecccCcEEEEEEcchhccccccceeEEEecCcCCcccCCceEE
Confidence 1223456789999987764 35689999999999999999999999999999999999999999999999999
Q ss_pred EEEEEeCeEEEEEeecCcCCcchHHHHHHHHHHHHHhcCcCCCCCccchhccCCCceeeecccCCCCCCCccCCCCCcCc
Q 003171 682 LRVRVYDRIMCFVNCHFAAHLEAVNRRNADFDHVYRTMTFCRPSNLCSAAAAGASSVVQMLRSTNPLSGLTVEGVPELSE 761 (842)
Q Consensus 682 i~~~i~~~~~~Fv~~HLaa~~~~~~~Rn~~~~~I~~~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 761 (842)
+||++++++||||||||+||++++++||+||..|+++|.|.... .+.+
T Consensus 151 vr~~i~~t~l~fvn~HL~ag~~~~~~R~~~~~~i~~~l~~~~~~--------------------------------~~~~ 198 (345)
T d1i9za_ 151 IRFDYEDTGLCFITSHLAAGYTNYDERDHDYRTIASGLRFRRGR--------------------------------SIFN 198 (345)
T ss_dssp EEEEETTEEEEEEEEECCCCSSCHHHHHHHHHHHHHHCCCGGGC--------------------------------CTTS
T ss_pred EEEEECCEEEEEEEecccCcccchHHHHHHHHHHHHhhcccccc--------------------------------cccc
Confidence 99999999999999999999999999999999999999776422 2467
Q ss_pred ccEEEEeccceeeecCCChHHHHHHhhhcchHHHHHhhhHHHHhhcCCcccCcccCCCCCCCCcccccCCCCCCccccC
Q 003171 762 ADMVIFLGDFNYRLDGITYDEARDFISQRCFDWLRERDQLRAEMEAGNVFQGMREADIKFPPTYKFEKHLAGLAEACSC 840 (842)
Q Consensus 762 ~d~vf~~GDlNyRi~~~~~~~~~~~i~~~~~~~L~~~DQL~~~~~~~~~f~gf~E~~I~F~PTYK~~~~~~~~~~Ydt~ 840 (842)
+|++|||||||||++. +.+++.+++.++.++.|+++|||+.+|+.+.+|.+|.|++|+|||||||+.++ +.||++
T Consensus 199 ~d~v~~~GDlN~R~~~-~~~~~~~~i~~~~~~~l~~~dql~~~~~~~~~~~~~~E~~I~F~PTyk~~~~~---~~yd~~ 273 (345)
T d1i9za_ 199 HDYVVWFGDFNYRISL-TYEEVVPCIAQGKLSYLFEYDQLNKQMLTGKVFPFFSELPITFPPTYKFDIGT---DIYDTS 273 (345)
T ss_dssp SSEEEEEEECCCCBSS-CHHHHHHHHHTTCHHHHHTTBHHHHHHHTTSSSTTCBCCCCCSCCCBCBCTTS---SCBCCS
T ss_pred CceeEEeccccccccC-chhhhHhhhhccchhHHHHHHHHHhhhhccCcccCcccCCCCCCCCCeEECCC---CccCCC
Confidence 8999999999999996 99999999999999999999999999999999999999999999999999998 678886
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=1.3e-30 Score=272.76 Aligned_cols=286 Identities=15% Similarity=0.195 Sum_probs=202.2
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCCC-EEEeeCCCcEEEEeC
Q 003171 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPW 269 (842)
Q Consensus 191 ~~~V~~la~dpdg~~LaSGs~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~ 269 (842)
.++|.||+|+|++++|+||+.||+||+||+.++ +...++++|.++|++++++|++. +++++.++++.+|+.
T Consensus 17 ~~~I~~l~~sp~~~~l~s~s~Dg~i~iWd~~~~--------~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (317)
T d1vyhc1 17 RSPVTRVIFHPVFSVMVSASEDATIKVWDYETG--------DFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDF 88 (317)
T ss_dssp SSCEEEEEECSSSSEEEEEESSSCEEEEETTTC--------CCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEET
T ss_pred CCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCC--------CEEEEEeCCCCcEEEEeeecccccccccccccccccccc
Confidence 889999999999999999999999999999987 67888999999999999999998 679999999999998
Q ss_pred CCccceeecCCCceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcCCCCEEEEeC-CCcEEEEEccCCcEEEEe
Q 003171 270 EAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVF 348 (842)
Q Consensus 270 ~t~~~~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s-~~tI~lWD~~tg~~l~~l 348 (842)
........... + ...+..+...+++..+++++ ++.+++||+.+++.+.++
T Consensus 89 ~~~~~~~~~~~-------------------~----------~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~ 139 (317)
T d1vyhc1 89 QGFECIRTMHG-------------------H----------DHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTF 139 (317)
T ss_dssp TSSCEEECCCC-------------------C----------SSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEE
T ss_pred ccccccccccc-------------------c----------cccceeeeccCCCceEEeeccCcceeEeecccceeeeEE
Confidence 65432221111 1 23455666777777777666 678999999999999998
Q ss_pred ecCCceEeeeecccCCCccc--ccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEee--cCc---cccCCCc
Q 003171 349 NIDGQIENRVDMSLLPDFAM--EDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAA--KGG---FGDDNRR 421 (842)
Q Consensus 349 ~~~~~~~~~~~~s~~~~~~~--~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~--~g~---~~~~~~~ 421 (842)
..+......+.+++.....+ ..+..++++.... ... ...+.++...+..+.. .+. .......
T Consensus 140 ~~~~~~~~~~~~~~~~~~l~~~~~d~~v~~~~~~~-~~~----------~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 208 (317)
T d1vyhc1 140 TGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVAT-KEC----------KAELREHRHVVECISWAPESSYSSISEATGS 208 (317)
T ss_dssp ECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT-CCE----------EEEECCCSSCEEEEEECCSCGGGGGGGCCSC
T ss_pred ccCCCcceeeecccCCCEEEEEeCCCeEEEEeecc-cee----------eEEEecCCCCceEEEEeeccccceeeccccc
Confidence 87766544444443222111 0000111111110 000 0011122222222221 000 0001111
Q ss_pred eEEEEECCCCcEEEEeCCCeEEEEcC-CCCeeeeeecCCccEEEEE--ecCCEEEEEecCcEEEEEeCC-Cccccccccc
Q 003171 422 TEALTTSIDGMIWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQCLC--TFGSQIWVGYMNGIVQVLDLE-GNLLGGWVAH 497 (842)
Q Consensus 422 v~al~~s~dg~l~Sgs~DgtIrlWD~-~g~~l~~l~~H~~~V~sls--~dG~~LasGs~DgtIrlWD~~-g~~i~~l~gH 497 (842)
.......+...+++|+.|++|++||. +++++.++.+|...|.+++ ++|++|++|+.||+|+|||+. ++++.++.+|
T Consensus 209 ~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h 288 (317)
T d1vyhc1 209 ETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAH 288 (317)
T ss_dssp C-------CCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEECC
T ss_pred eeeeeccCCceeEeccCCCEEEEEECCCCcEEEEEeCCCCCEEEEEECCCCCEEEEEECCCeEEEEECCCCcEEEEEcCC
Confidence 11111222334789999999999999 7899999999999999886 478999999999999999987 7899999999
Q ss_pred ccCEEEEEe--CCCEEEEEcCCCCeeecc
Q 003171 498 SSPVIKMAV--GAGYIFTLANHGGIRGWN 524 (842)
Q Consensus 498 ~~~V~sla~--dg~~l~S~S~DgtIrvWd 524 (842)
.+.|+++++ ++++|+|+|.|++|++||
T Consensus 289 ~~~V~~~~~s~~~~~l~s~s~Dg~i~iWd 317 (317)
T d1vyhc1 289 EHFVTSLDFHKTAPYVVTGSVDQTVKVWE 317 (317)
T ss_dssp SSCEEEEEECSSSSCEEEEETTSEEEEEC
T ss_pred CCCEEEEEEcCCCCEEEEEeCCCeEEEeC
Confidence 999999985 788999999999999997
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=99.98 E-value=6.8e-30 Score=275.23 Aligned_cols=263 Identities=11% Similarity=0.126 Sum_probs=205.1
Q ss_pred cCCEEEEecCCCEEEEeCCCCccccccccccccCCCCCCCCCCeeeeeecCCCeEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 003171 141 TEEQLWAGGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGHRDGRIMCWKM 220 (842)
Q Consensus 141 ~~~~l~~~~D~~vrvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~V~~la~dpdg~~LaSGs~DGtIrlWdl 220 (842)
+++.|..+.++.|.+||+++..... .|. .| ..+|.|++|+|+|++|+||+.||+|++||+
T Consensus 28 ~g~~l~~~~~~~v~i~~~~~~~~~~-----------------~~~--~H-~~~v~~~~~sp~g~~latg~~dg~i~iwd~ 87 (311)
T d1nr0a1 28 AGDKIQYCNGTSVYTVPVGSLTDTE-----------------IYT--EH-SHQTTVAKTSPSGYYCASGDVHGNVRIWDT 87 (311)
T ss_dssp TSSEEEEEETTEEEEEETTCSSCCE-----------------EEC--CC-SSCEEEEEECTTSSEEEEEETTSEEEEEES
T ss_pred CCCEEEEEeCCEEEEEECCCCceeE-----------------EEc--CC-CCCEEEEEEeCCCCeEeccccCceEeeeee
Confidence 4557777788899999997643221 122 34 789999999999999999999999999999
Q ss_pred CCCccCCCCCcceeEEecccCCcEEEEEEecCCC-EEEeeC--CCcEEEEeCCCccceeecCCCceeeeEEEEeeceeec
Q 003171 221 NARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSE--GGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDL 297 (842)
Q Consensus 221 ~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~--DgtIrvWd~~t~~~~l~~~~~~~~~~~l~~~~s~~~l 297 (842)
.++. ......+.+|.++|.+|+|+|+|+ |++++. +..++||++++++....+.
T Consensus 88 ~~~~------~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~~~~~~~~~v~~~~~~~~~~~l~------------------ 143 (311)
T d1nr0a1 88 TQTT------HILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLT------------------ 143 (311)
T ss_dssp SSTT------CCEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTTCCBCBCCC------------------
T ss_pred eccc------cccccccccccCcccccccccccccccccccccccccccccccccccccccc------------------
Confidence 8862 122356889999999999999998 677765 5679999998754322221
Q ss_pred ccceeccceeeeecCCEEEEEEcCCCC-EEEEeC-CCcEEEEEccCCcEEEEeecCCceEeeeecccCCCcccccceEEE
Q 003171 298 RSHLSVNGFSSILTSDIKNLLSDHSRA-KVWSAG-FLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTK 375 (842)
Q Consensus 298 ~~~~~~~~~~~~~s~~v~~las~~~~~-~v~s~s-~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~ 375 (842)
+| ...+.++++++++. .+++++ +++|++||+++++++..+.
T Consensus 144 -~h----------~~~v~~v~~~~~~~~~l~sgs~d~~i~i~d~~~~~~~~~~~-------------------------- 186 (311)
T d1nr0a1 144 -GQ----------ARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFG-------------------------- 186 (311)
T ss_dssp -CC----------SSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEEC--------------------------
T ss_pred -cc----------ccccccccccccceeeecccccccccccccccccccccccc--------------------------
Confidence 12 34577788877666 466665 6789999999877644332
Q ss_pred EEecCCCCccceeeeEeecCcceEEecCCcEEEEeecCccccCCCceEEEEECCCCc-EEEEeCCCeEEEEcC-CCCeee
Q 003171 376 IVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGM-IWTGGANGLLLQWDP-NGNRLQ 453 (842)
Q Consensus 376 ~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~al~~s~dg~-l~Sgs~DgtIrlWD~-~g~~l~ 453 (842)
.|...|.++.++|++. +++|+.|+.|++||. +++.+.
T Consensus 187 -----------------------------------------~~~~~i~~v~~~p~~~~l~~~~~d~~v~~~d~~~~~~~~ 225 (311)
T d1nr0a1 187 -----------------------------------------EHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTG 225 (311)
T ss_dssp -----------------------------------------CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEE
T ss_pred -----------------------------------------cccccccccccCccccccccccccccccccccccccccc
Confidence 2234466788899987 789999999999999 677766
Q ss_pred eee-------cCCccEEEEEe--cCCEEEEEecCcEEEEEeCC-Ccccccccccc---cCEEEEEeCCCEEEEEcCCCCe
Q 003171 454 DFQ-------YLPFAVQCLCT--FGSQIWVGYMNGIVQVLDLE-GNLLGGWVAHS---SPVIKMAVGAGYIFTLANHGGI 520 (842)
Q Consensus 454 ~l~-------~H~~~V~sls~--dG~~LasGs~DgtIrlWD~~-g~~i~~l~gH~---~~V~sla~dg~~l~S~S~DgtI 520 (842)
++. +|..+|+++++ +|++|++|+.||+|+|||++ +++++++..|. ..+.++.++++++++++.||.|
T Consensus 226 ~~~~~~~~~~~h~~~V~~~~~s~~~~~l~tgs~Dg~v~iwd~~t~~~~~~l~~~~~~~~~~~~~~~~~~~l~s~s~dG~i 305 (311)
T d1nr0a1 226 VFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFI 305 (311)
T ss_dssp ECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCE
T ss_pred cccccccccccccccccccccCCCCCEEEEEeCCCeEEEEECCCCcEEEEEECCCCccceEEEEEecCCEEEEEECCCEE
Confidence 654 68899999875 68999999999999999987 78888887664 4677888999999999999999
Q ss_pred eeccc
Q 003171 521 RGWNV 525 (842)
Q Consensus 521 rvWd~ 525 (842)
++||.
T Consensus 306 ~~wd~ 310 (311)
T d1nr0a1 306 NFVNP 310 (311)
T ss_dssp EEEET
T ss_pred EEEeC
Confidence 99995
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.97 E-value=8.6e-30 Score=278.45 Aligned_cols=294 Identities=18% Similarity=0.188 Sum_probs=211.0
Q ss_pred ceeEEEEec--CCEEEEecCCCEEEEeCCCCccccccccccccCCCCCCCCCCeeeeeecCCCeEEEEEcCCCCEEEEEe
Q 003171 133 CFLRTIVCT--EEQLWAGGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGH 210 (842)
Q Consensus 133 ~~~~~l~~~--~~~l~~~~D~~vrvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~V~~la~dpdg~~LaSGs 210 (842)
..+.+|+.+ ++.|.+|+|++|+|||+.+...... .....................+ ...|.|++|+|+|++|++|+
T Consensus 63 ~~V~~l~fs~dg~~lasg~d~~i~iW~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~V~~l~~s~~~~~l~s~~ 140 (388)
T d1erja_ 63 SVVCCVKFSNDGEYLATGCNKTTQVYRVSDGSLVAR-LSDDSAANKDPENLNTSSSPSS-DLYIRSVCFSPDGKFLATGA 140 (388)
T ss_dssp SCCCEEEECTTSSEEEEECBSCEEEEETTTCCEEEE-ECC-----------------CC-CCBEEEEEECTTSSEEEEEE
T ss_pred CcEEEEEECCCCCEEEEEeCCeEEEEEecccceEee-ecccccccccccccccccccCC-CCCEEEEEECCCCCcceecc
Confidence 356677765 3455568899999999977543321 0000000000000000111122 67899999999999999999
Q ss_pred CCCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCCC-EEEeeCCCcEEEEeCCCccceeecCCCceeeeEEE
Q 003171 211 RDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALI 289 (842)
Q Consensus 211 ~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~~t~~~~l~~~~~~~~~~~l~ 289 (842)
.||+|++|+...+ +....+.+|...|+++++++++. +++|+.++.|++||..+.........
T Consensus 141 ~dg~v~i~~~~~~--------~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~--------- 203 (388)
T d1erja_ 141 EDRLIRIWDIENR--------KIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSI--------- 203 (388)
T ss_dssp TTSCEEEEETTTT--------EEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEEC---------
T ss_pred ccccccccccccc--------ccccccccccccccccccccccccccccccceeeeeeecccccccccccc---------
Confidence 9999999999887 67788899999999999999987 78999999999999976432211110
Q ss_pred EeeceeecccceeccceeeeecCCEEEEEE-cCCCCEEEEeC-CCcEEEEEccCCcEEEEeecCCceEeeeecccCCCcc
Q 003171 290 VERSYIDLRSHLSVNGFSSILTSDIKNLLS-DHSRAKVWSAG-FLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFA 367 (842)
Q Consensus 290 ~~~s~~~l~~~~~~~~~~~~~s~~v~~las-~~~~~~v~s~s-~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~~ 367 (842)
......++. ..++..+++++ ++.|++||..++..+..+.....
T Consensus 204 ---------------------~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~-------------- 248 (388)
T d1erja_ 204 ---------------------EDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENE-------------- 248 (388)
T ss_dssp ---------------------SSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------------------
T ss_pred ---------------------ccccccccccCCCCCeEEEEcCCCeEEEeecccCccceeeccccc--------------
Confidence 112222333 33556676665 67899999999887655431100
Q ss_pred cccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEeecCccccCCCceEEEEECCCCc-EEEEeCCCeEEEEc
Q 003171 368 MEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGM-IWTGGANGLLLQWD 446 (842)
Q Consensus 368 ~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~al~~s~dg~-l~Sgs~DgtIrlWD 446 (842)
....|...|.+++++|++. |++|+.||+|++||
T Consensus 249 ----------------------------------------------~~~~h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd 282 (388)
T d1erja_ 249 ----------------------------------------------SGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWN 282 (388)
T ss_dssp ------------------------------------------------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred ----------------------------------------------cccCCCCCEEEEEECCCCCEEEEEECCCcEEEEe
Confidence 0223556688899999987 78999999999999
Q ss_pred C-CCC------------eeeeeecCCccEEEEEe--cCCEEEEEecCcEEEEEeCC-CcccccccccccCEEEEEe----
Q 003171 447 P-NGN------------RLQDFQYLPFAVQCLCT--FGSQIWVGYMNGIVQVLDLE-GNLLGGWVAHSSPVIKMAV---- 506 (842)
Q Consensus 447 ~-~g~------------~l~~l~~H~~~V~sls~--dG~~LasGs~DgtIrlWD~~-g~~i~~l~gH~~~V~sla~---- 506 (842)
+ +++ +......|...|.++++ +|++|++|+.||+|++||+. ++++.++.+|.+.|.+++.
T Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~l~~H~~~V~~~~~~~~~ 362 (388)
T d1erja_ 283 LQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGS 362 (388)
T ss_dssp C---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSC
T ss_pred ccCCccccccccccccceeeecccccceEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEeCCCCCEEEEEEecCc
Confidence 8 432 34455678999998865 78999999999999999987 8899999999999999863
Q ss_pred ----CCCEEEEEcCCCCeeecccc
Q 003171 507 ----GAGYIFTLANHGGIRGWNVT 526 (842)
Q Consensus 507 ----dg~~l~S~S~DgtIrvWd~~ 526 (842)
++++|+|||.||+||+|+++
T Consensus 363 ~~spd~~~l~s~s~Dg~I~iW~~~ 386 (388)
T d1erja_ 363 SLGPEYNVFATGSGDCKARIWKYK 386 (388)
T ss_dssp TTCTTCEEEEEEETTSEEEEEEEE
T ss_pred ccCCCCCEEEEEeCCCEEEEEeee
Confidence 67899999999999999974
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.97 E-value=1.5e-29 Score=274.05 Aligned_cols=274 Identities=14% Similarity=0.182 Sum_probs=209.5
Q ss_pred ceeEEEEec--CCEEEEecCCCEEEEeCCCCccccccccccccCCCCCCCCCCeeeeeecCCCeEEEEEcCCCCEEEEEe
Q 003171 133 CFLRTIVCT--EEQLWAGGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGH 210 (842)
Q Consensus 133 ~~~~~l~~~--~~~l~~~~D~~vrvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~V~~la~dpdg~~LaSGs 210 (842)
..+.+++.+ +..|.+++|+.|+|||+.+...... ...+....| .++|.|++|+|++++|++|+
T Consensus 52 ~~V~~v~fs~~g~~latg~dg~V~iWd~~~~~~~~~--------------~~~~~~~~h-~~~I~~v~~s~dg~~l~s~~ 116 (337)
T d1gxra_ 52 EVVCAVTISNPTRHVYTGGKGCVKVWDISHPGNKSP--------------VSQLDCLNR-DNYIRSCKLLPDGCTLIVGG 116 (337)
T ss_dssp SCCCEEEECSSSSEEEEECBSEEEEEETTSTTCCSC--------------SEEEECSCT-TSBEEEEEECTTSSEEEEEE
T ss_pred CcEEEEEECCCCCEEEEEECCEEEEEEccCCcccce--------------eEEeeecCC-CCcEEEEEEcCCCCEEEEee
Confidence 345666665 4467778899999999976432211 000111122 77899999999999999999
Q ss_pred CCCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCCC-EEEeeCCCcEEEEeCCCccceeecCCCceeeeEEE
Q 003171 211 RDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALI 289 (842)
Q Consensus 211 ~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~~t~~~~l~~~~~~~~~~~l~ 289 (842)
.||+|++||+.... .+....+.+|...|.+++|+|++. +++++.|++|++|++.+.+......
T Consensus 117 ~dg~i~iwd~~~~~------~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~~~~~~~~~~~~~---------- 180 (337)
T d1gxra_ 117 EASTLSIWDLAAPT------PRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQ---------- 180 (337)
T ss_dssp SSSEEEEEECCCC--------EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEEC----------
T ss_pred cccccccccccccc------cccccccccccccccccccccccccccccccccccccccccccccccccc----------
Confidence 99999999987642 144566889999999999999998 7899999999999997643221111
Q ss_pred EeeceeecccceeccceeeeecCCEEEEEEcCCCCEEEEeC-CCcEEEEEccCCcEEEEeecCCceEeeeecccCCCccc
Q 003171 290 VERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAM 368 (842)
Q Consensus 290 ~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s-~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~~~ 368 (842)
++ ...+.++++++.+..+++++ ++++++||+++++.++.+..
T Consensus 181 ---------~~----------~~~v~~l~~s~~~~~~~~~~~d~~v~i~d~~~~~~~~~~~~------------------ 223 (337)
T d1gxra_ 181 ---------GH----------TDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDF------------------ 223 (337)
T ss_dssp ---------CC----------SSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEEC------------------
T ss_pred ---------cc----------ccccccccccccccccccccccccccccccccceeeccccc------------------
Confidence 11 34577888888888777776 67899999999877554321
Q ss_pred ccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEeecCccccCCCceEEEEECCCCc-EEEEeCCCeEEEEcC
Q 003171 369 EDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGM-IWTGGANGLLLQWDP 447 (842)
Q Consensus 369 ~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~al~~s~dg~-l~Sgs~DgtIrlWD~ 447 (842)
...|.+++++|++. +++|+.|+.|++||+
T Consensus 224 --------------------------------------------------~~~i~~l~~~~~~~~l~~~~~d~~i~i~d~ 253 (337)
T d1gxra_ 224 --------------------------------------------------TSQIFSLGYCPTGEWLAVGMESSNVEVLHV 253 (337)
T ss_dssp --------------------------------------------------SSCEEEEEECTTSSEEEEEETTSCEEEEET
T ss_pred --------------------------------------------------ccceEEEEEcccccccceeccccccccccc
Confidence 12345677888887 789999999999999
Q ss_pred CCCeeeeeecCCccEEEEEe--cCCEEEEEecCcEEEEEeCC-CcccccccccccCEEEEEe--CCCEEEEEcCCCCeee
Q 003171 448 NGNRLQDFQYLPFAVQCLCT--FGSQIWVGYMNGIVQVLDLE-GNLLGGWVAHSSPVIKMAV--GAGYIFTLANHGGIRG 522 (842)
Q Consensus 448 ~g~~l~~l~~H~~~V~sls~--dG~~LasGs~DgtIrlWD~~-g~~i~~l~gH~~~V~sla~--dg~~l~S~S~DgtIrv 522 (842)
+.........|...|+++++ +|++|++|+.||+|++||+. ++.+..+ .|.+.|+++++ ++++|+++|.|++|++
T Consensus 254 ~~~~~~~~~~~~~~i~~v~~s~~g~~l~s~s~Dg~i~iwd~~~~~~~~~~-~~~~~v~~~~~s~d~~~l~t~s~D~~I~v 332 (337)
T d1gxra_ 254 NKPDKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQS-KESSSVLSCDISVDDKYIVTGSGDKKATV 332 (337)
T ss_dssp TSSCEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEE-ECSSCEEEEEECTTSCEEEEEETTSCEEE
T ss_pred cccccccccccccccceEEECCCCCEEEEEeCCCeEEEEECCCCCEEEEc-cCCCCEEEEEEeCCCCEEEEEeCCCeEEE
Confidence 54444456789999999864 78999999999999999987 6666654 58899999885 7889999999999999
Q ss_pred ccc
Q 003171 523 WNV 525 (842)
Q Consensus 523 Wd~ 525 (842)
||+
T Consensus 333 Wdl 335 (337)
T d1gxra_ 333 YEV 335 (337)
T ss_dssp EEE
T ss_pred EEE
Confidence 996
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=99.97 E-value=1.3e-28 Score=259.96 Aligned_cols=266 Identities=15% Similarity=0.173 Sum_probs=195.2
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEe-cccCCcEEEEEEecCCCEEEeeCCCcEEEEeC
Q 003171 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSW-QAHRGPVLSLCISSYGDLWSGSEGGGIKIWPW 269 (842)
Q Consensus 191 ~~~V~~la~dpdg~~LaSGs~DGtIrlWdl~~g~~~~~~~~~~~~~l-~gH~~~V~slafs~dG~L~SgS~DgtIrvWd~ 269 (842)
.++|.||+|+|+|++|+||+.||+|++||+.++ ++...+ .+|.++|++|+|+|+|++++++.|++|++|+.
T Consensus 12 ~~~V~~l~~s~dg~~l~s~s~Dg~v~vWd~~~~--------~~~~~~~~~h~~~v~~v~~~~~g~~~~~~~d~~v~~~~~ 83 (299)
T d1nr0a2 12 NKAITALSSSADGKTLFSADAEGHINSWDISTG--------ISNRVFPDVHATMITGIKTTSKGDLFTVSWDDHLKVVPA 83 (299)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSCEEEEETTTC--------CEEECSSCSCSSCEEEEEECTTSCEEEEETTTEEEEECS
T ss_pred CCCcEEEEECCCCCEEEEEcCCCeEEEEECCCC--------cEEEEEcCCCCCcEEEEEeeccceeecccceeeEEEecc
Confidence 889999999999999999999999999999987 556665 57999999999999999999999999999998
Q ss_pred CCccceeecCCCceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcCCCCEEEEeCCCcEEEEEccCCcEEEEee
Q 003171 270 EAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGFLSFALWDARTRELLKVFN 349 (842)
Q Consensus 270 ~t~~~~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s~~tI~lWD~~tg~~l~~l~ 349 (842)
...... .. ... .......+..++.++++..+.++.++.+++|+... ......
T Consensus 84 ~~~~~~-~~---~~~----------------------~~~~~~~~~~~~~s~~g~~~~~~~~~~i~~~~~~~--~~~~~~ 135 (299)
T d1nr0a2 84 GGSGVD-SS---KAV----------------------ANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGK--LTEVPI 135 (299)
T ss_dssp SSSSSC-TT---SCC----------------------EEECSSCEEEEEECTTSSCEEEEESSEEEEEETTE--EEEEEC
T ss_pred CCcccc-cc---ccc----------------------ccccccccccccccccccccccccccccccccccc--cccccc
Confidence 542210 00 000 00113456677888888888888888999998542 222211
Q ss_pred cCCceEeeeecccCCCcccccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEee--cC-----ccccCCCce
Q 003171 350 IDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAA--KG-----GFGDDNRRT 422 (842)
Q Consensus 350 ~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~--~g-----~~~~~~~~v 422 (842)
.+. . ..+.+.+++...++|..++..+++. .+ ....|...|
T Consensus 136 ~~~--~-------------------------------~~~~~s~~~~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~i 182 (299)
T d1nr0a2 136 SYN--S-------------------------------SCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEI 182 (299)
T ss_dssp SSC--E-------------------------------EEEEECTTSCEEEEEETTSEEEEEEEETTEEEEEEEEECSSCE
T ss_pred ccc--c-------------------------------ccccccccccccccccccccccccccccccccccccccccccc
Confidence 110 0 1123334444455566665555443 11 123467789
Q ss_pred EEEEECCCCc-EEEEeCCCeEEEEcC-CCCe---eeeeecCCccEEEEE--ecCCEEEEEecCcEEEEEeCC-Cc--ccc
Q 003171 423 EALTTSIDGM-IWTGGANGLLLQWDP-NGNR---LQDFQYLPFAVQCLC--TFGSQIWVGYMNGIVQVLDLE-GN--LLG 492 (842)
Q Consensus 423 ~al~~s~dg~-l~Sgs~DgtIrlWD~-~g~~---l~~l~~H~~~V~sls--~dG~~LasGs~DgtIrlWD~~-g~--~i~ 492 (842)
.+++++|++. |++|+.|+.|++||+ ++.. +..+.+|..+|++++ ++|++|++|+.||+|+|||++ ++ .+.
T Consensus 183 ~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~sgs~dg~i~iwd~~~~~~~~~~ 262 (299)
T d1nr0a2 183 TSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPII 262 (299)
T ss_dssp EEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCTTSCCEE
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccceEEEcCCCEEEEEECCCCCcceEE
Confidence 9999999987 789999999999999 5543 356678999999986 478999999999999999986 33 233
Q ss_pred cccc-cccCEEEEE-eCCCEEEEEcCCCCeeeccc
Q 003171 493 GWVA-HSSPVIKMA-VGAGYIFTLANHGGIRGWNV 525 (842)
Q Consensus 493 ~l~g-H~~~V~sla-~dg~~l~S~S~DgtIrvWd~ 525 (842)
...+ |...|.+++ .++++|+|+|.|++||+||+
T Consensus 263 ~~~~~~~~~v~~~~~~~~~~l~s~s~D~~i~iWdl 297 (299)
T d1nr0a2 263 IKGAHAMSSVNSVIWLNETTIVSAGQDSNIKFWNV 297 (299)
T ss_dssp ETTSSTTSCEEEEEEEETTEEEEEETTSCEEEEEC
T ss_pred EecCCCCCcEEEEEECCCCEEEEEeCCCEEEEEec
Confidence 3334 456777776 57889999999999999997
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.97 E-value=5.2e-28 Score=257.20 Aligned_cols=270 Identities=18% Similarity=0.213 Sum_probs=195.8
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCCC-EEEeeCCCcEEEEeC
Q 003171 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPW 269 (842)
Q Consensus 191 ~~~V~~la~dpdg~~LaSGs~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~ 269 (842)
.++|.||+|+|++++|+||+.||+|++||+.++ +.+..+.+|.++|++++|+|+|. +++|+.|++|++|+.
T Consensus 55 ~~~I~~l~~s~~~~~l~sgs~Dg~v~iWd~~~~--------~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~~i~~~~~ 126 (340)
T d1tbga_ 55 LAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTT--------NKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNL 126 (340)
T ss_dssp SSCEEEEEECTTSSEEEEEETTTEEEEEETTTT--------EEEEEEECSCSCEEEEEECTTSSEEEEEETTCCEEEEES
T ss_pred CCCEEEEEECCCCCEEEEEECCCceeeeecccc--------eeEEEEecccccEEeeEeeccceeeeeecccceeecccc
Confidence 889999999999999999999999999999987 67888999999999999999998 789999999999998
Q ss_pred CCccceeecCCCceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcCCCCEEEEeCCCcEEEEEccCCcEEEEee
Q 003171 270 EAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGFLSFALWDARTRELLKVFN 349 (842)
Q Consensus 270 ~t~~~~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s~~tI~lWD~~tg~~l~~l~ 349 (842)
......... .. .+.++ ...............+....+.+...|+..+........
T Consensus 127 ~~~~~~~~~------~~---------~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (340)
T d1tbga_ 127 KTREGNVRV------SR---------ELAGH----------TGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFT 181 (340)
T ss_dssp SSSCSCCCE------EE---------EECCC----------SSCEEEEEEEETTEEEEEETTTEEEEEETTTTEEEEEEE
T ss_pred ccccccccc------ce---------ecccc----------ccccccccccccccccccccccccccccccccccccccc
Confidence 653211100 00 01111 111222222223333334445677778777665544333
Q ss_pred cCCceEeeeecccCCCcccccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEee--c----CccccCCCceE
Q 003171 350 IDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAA--K----GGFGDDNRRTE 423 (842)
Q Consensus 350 ~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~--~----g~~~~~~~~v~ 423 (842)
........ ..+.+.....+.|..++..+++. . ..+..|...|.
T Consensus 182 ~~~~~~~~-------------------------------~~~~~~~~~~~~~~~d~~v~i~d~~~~~~~~~~~~h~~~i~ 230 (340)
T d1tbga_ 182 GHTGDVMS-------------------------------LSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDIN 230 (340)
T ss_dssp CCSSCEEE-------------------------------EEECTTSSEEEEEETTTEEEEEETTTTEEEEEECCCSSCEE
T ss_pred ccceeEee-------------------------------eccccccceeEEeecCceEEEEECCCCcEEEEEeCCCCCeE
Confidence 22211100 11111122334555555555543 1 13456788899
Q ss_pred EEEECCCCc-EEEEeCCCeEEEEcC-CCCeeeeee--cCCccEEEEEe--cCCEEEEEecCcEEEEEeCC-Ccccccccc
Q 003171 424 ALTTSIDGM-IWTGGANGLLLQWDP-NGNRLQDFQ--YLPFAVQCLCT--FGSQIWVGYMNGIVQVLDLE-GNLLGGWVA 496 (842)
Q Consensus 424 al~~s~dg~-l~Sgs~DgtIrlWD~-~g~~l~~l~--~H~~~V~sls~--dG~~LasGs~DgtIrlWD~~-g~~i~~l~g 496 (842)
+++++|++. +++|+.|++|++||. ..+.+..+. .|...|.++++ +|++|++|+.||+|++||+. ++++.++.+
T Consensus 231 ~v~~~p~~~~l~s~s~d~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~ 310 (340)
T d1tbga_ 231 AICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAG 310 (340)
T ss_dssp EEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECSSSCEEEEEETTSCEEEEETTTCCEEEEECC
T ss_pred EEEECCCCCEEEEEeCCCeEEEEeecccccccccccccccCceEEEEECCCCCEEEEEECCCEEEEEECCCCcEEEEEcC
Confidence 999999987 789999999999999 566666553 56677888765 78899999999999999986 889999999
Q ss_pred cccCEEEEEe--CCCEEEEEcCCCCeeecc
Q 003171 497 HSSPVIKMAV--GAGYIFTLANHGGIRGWN 524 (842)
Q Consensus 497 H~~~V~sla~--dg~~l~S~S~DgtIrvWd 524 (842)
|.+.|++|++ ++++|+|||.||+|++||
T Consensus 311 H~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd 340 (340)
T d1tbga_ 311 HDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp CSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred CCCCEEEEEEeCCCCEEEEEccCCEEEEeC
Confidence 9999999985 788999999999999997
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.96 E-value=5.3e-28 Score=257.39 Aligned_cols=292 Identities=13% Similarity=0.105 Sum_probs=191.1
Q ss_pred CCC-eEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCCCEEEeeCCCcEEEEeC
Q 003171 191 VSS-VMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGDLWSGSEGGGIKIWPW 269 (842)
Q Consensus 191 ~~~-V~~la~dpdg~~LaSGs~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~L~SgS~DgtIrvWd~ 269 (842)
... +.|+.++ +++|+||+.||+||+||+.++ +++.++++|.++|++|+|+|++.|+||+.|++|++|++
T Consensus 12 ~~~vitc~~~~--~~~l~tgs~Dg~i~vWd~~~~--------~~~~~l~~H~~~V~~l~~s~~~~l~s~s~D~~i~iw~~ 81 (355)
T d1nexb2 12 MTSVITCLQFE--DNYVITGADDKMIRVYDSINK--------KFLLQLSGHDGGVWALKYAHGGILVSGSTDRTVRVWDI 81 (355)
T ss_dssp SSSCEEEEEEE--TTEEEEEETTTEEEEEETTTT--------EEEEEEECCSSCEEEEEEETTTEEEEEETTCCEEEEET
T ss_pred CCCcEEEEEEC--CCEEEEEeCCCeEEEEECCCC--------cEEEEEECCCCCEEEEEEcCCCEEEEEecccccccccc
Confidence 555 5787775 689999999999999999987 78899999999999999999888999999999999999
Q ss_pred CCccceeecCCCceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcCCCCEEEEeC-CCcEEEEEccCCcEEEEe
Q 003171 270 EAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVF 348 (842)
Q Consensus 270 ~t~~~~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s-~~tI~lWD~~tg~~l~~l 348 (842)
............... .........+++..+++++ +++|++||+.++..+...
T Consensus 82 ~~~~~~~~~~~~~~~---------------------------~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~ 134 (355)
T d1nexb2 82 KKGCCTHVFEGHNST---------------------------VRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDH 134 (355)
T ss_dssp TTTEEEEEECCCSSC---------------------------EEEEEEEEETTEEEEEEEETTSEEEEEECCC-------
T ss_pred ccccccccccccccc---------------------------ccccccccccccceeeeecCCCcEEEEEccCCceeccc
Confidence 764332221111000 0112223334444455444 678999999988765443
Q ss_pred ecCCceEeeeecccCCCcccccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEee--cC----ccccCCCce
Q 003171 349 NIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAA--KG----GFGDDNRRT 422 (842)
Q Consensus 349 ~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~--~g----~~~~~~~~v 422 (842)
........ .......... ........ .. ........+...+.+..++..+++. .+ .+..+...+
T Consensus 135 ~~~~~~~~-~~~~~~~~~~-----~~~~~~~~--~~--~v~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~ 204 (355)
T d1nexb2 135 GEEHDYPL-VFHTPEENPY-----FVGVLRGH--MA--SVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRI 204 (355)
T ss_dssp ----CCCE-EESCTTTCTT-----EEEEEECC--SS--CEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCE
T ss_pred cccceecc-ceeccccccc-----eeeeeeec--cc--cccccccccceeeeecccceeeeeecccccceeeeecccccc
Confidence 22111100 0000000000 00000000 00 0112233344555666666555543 11 223455677
Q ss_pred EEEEECCCCc-EEEEeCCCeEEEEcC-CCCeeeeeecCCccEEEEEecCCEEEEEecCcEEEEEeCCCcccccccccccC
Q 003171 423 EALTTSIDGM-IWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQCLCTFGSQIWVGYMNGIVQVLDLEGNLLGGWVAHSSP 500 (842)
Q Consensus 423 ~al~~s~dg~-l~Sgs~DgtIrlWD~-~g~~l~~l~~H~~~V~sls~dG~~LasGs~DgtIrlWD~~g~~i~~l~gH~~~ 500 (842)
.++.+++++. +++++.|++|++||. ++.++..+.+|...|.++++++++|++|+.||+|++||++. ....+.+|...
T Consensus 205 ~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~ 283 (355)
T d1nexb2 205 YSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLSDKFLVSAAADGSIRGWDAND-YSRKFSYHHTN 283 (355)
T ss_dssp EEEEEETTTTEEEEEETTSCEEEEETTTCCEEEEECCCSSCCCEEEECSSEEEEECTTSEEEEEETTT-CCEEEEEECTT
T ss_pred ccccccccceeeecccccceEEeeeccccccccccccccccccccccccceeeeeecccccccccccc-cceecccccCC
Confidence 8888998887 789999999999999 78999999999999999999999999999999999999873 23456677777
Q ss_pred EEEEE---eCCCEEEEEcCCCCeeeccccCCCCC
Q 003171 501 VIKMA---VGAGYIFTLANHGGIRGWNVTSPGPL 531 (842)
Q Consensus 501 V~sla---~dg~~l~S~S~DgtIrvWd~~~~~~~ 531 (842)
+.++. .++..++++ .|++|++||+++...+
T Consensus 284 ~~~~~~~~~~~~~l~~g-~d~~i~vwd~~tg~~~ 316 (355)
T d1nexb2 284 LSAITTFYVSDNILVSG-SENQFNIYNLRSGKLV 316 (355)
T ss_dssp CCCCCEEEECSSEEEEE-ETTEEEEEETTTCCBC
T ss_pred ceEEEEEcCCCCEEEEE-eCCEEEEEECCCCCEE
Confidence 76643 466666555 5899999999876554
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.96 E-value=9e-27 Score=246.42 Aligned_cols=72 Identities=21% Similarity=0.249 Sum_probs=62.6
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCCCEEEeeCCCcEEEEeCC
Q 003171 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGDLWSGSEGGGIKIWPWE 270 (842)
Q Consensus 191 ~~~V~~la~dpdg~~LaSGs~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~L~SgS~DgtIrvWd~~ 270 (842)
.++|.+ +++++|++|+||+.||+||+||+.++ +++.++.+|.++|++++|+++ .|+|||.|+++++|+..
T Consensus 16 ~~~V~s-~~~~~g~~l~sgs~Dg~i~vWd~~~~--------~~~~~~~~h~~~V~~v~~~~~-~l~s~s~D~~~~~~~~~ 85 (342)
T d2ovrb2 16 DDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTG--------KCLRTLVGHTGGVWSSQMRDN-IIISGSTDRTLKVWNAE 85 (342)
T ss_dssp TTSCEE-EEEEETTEEEEEETTSCEEEEETTTC--------CEEEECCCCSSCEEEEEEETT-EEEEEETTSCEEEEETT
T ss_pred CCceEE-EEEECCCEEEEEeCCCeEEEEECCCC--------CEEEEEeCCCCCEEEEEeCCC-ccccceecccccccccc
Confidence 777754 24556899999999999999999987 678899999999999999974 68999999999999986
Q ss_pred Cc
Q 003171 271 AI 272 (842)
Q Consensus 271 t~ 272 (842)
..
T Consensus 86 ~~ 87 (342)
T d2ovrb2 86 TG 87 (342)
T ss_dssp TT
T ss_pred cc
Confidence 64
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.96 E-value=5.1e-27 Score=242.63 Aligned_cols=258 Identities=21% Similarity=0.256 Sum_probs=182.1
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCCC-EEEeeCCCcEEEEeC
Q 003171 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPW 269 (842)
Q Consensus 191 ~~~V~~la~dpdg~~LaSGs~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~ 269 (842)
...|+|+.+ +|++|+||+.||+||+||+.++ +++.++++|+++|++|+| +++ |+|||.|++|++|++
T Consensus 15 ~~~V~c~~~--d~~~l~sgs~Dg~i~vWd~~~~--------~~~~~l~~H~~~V~~v~~--~~~~l~s~s~D~~i~~~~~ 82 (293)
T d1p22a2 15 SKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTL--------ECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDV 82 (293)
T ss_dssp CCCEEEEEC--CSSEEEEEESSSCEEEEESSSC--------CEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEES
T ss_pred CCCEEEEEE--cCCEEEEEeCCCeEEEEECCCC--------cEEEEEecCCCCEeeeec--ccceeeccccccccccccc
Confidence 568999765 6899999999999999999987 778899999999999987 455 789999999999999
Q ss_pred CCccceeecCCCceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcCCCCEEEEeCCCcEEEEEccCCcEEE---
Q 003171 270 EAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGFLSFALWDARTRELLK--- 346 (842)
Q Consensus 270 ~t~~~~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s~~tI~lWD~~tg~~l~--- 346 (842)
..+.......... ..........+..+....++.+.+||..+.....
T Consensus 83 ~~~~~~~~~~~~~------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (293)
T d1p22a2 83 NTGEMLNTLIHHC------------------------------EAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRR 132 (293)
T ss_dssp SSCCEEEEECCCC------------------------------SCEEEEECCTTEEEEEETTSCEEEEECSSSSCCEEEE
T ss_pred ccccccccccccc------------------------------cccccccccccceeecccccceeEeeccccccccccc
Confidence 7654322211100 0111112222223333446789999998765322
Q ss_pred EeecCCceEeeeecccCCCcccccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEee--cC----ccccCCC
Q 003171 347 VFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAA--KG----GFGDDNR 420 (842)
Q Consensus 347 ~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~--~g----~~~~~~~ 420 (842)
.+..+......... .......+..++..+++. .+ .+..+..
T Consensus 133 ~~~~~~~~v~~~~~---------------------------------~~~~~~~~s~d~~i~~~d~~~~~~~~~~~~~~~ 179 (293)
T d1p22a2 133 VLVGHRAAVNVVDF---------------------------------DDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKR 179 (293)
T ss_dssp EECCCSSCEEEEEE---------------------------------ETTEEEEEETTSEEEEEETTTCCEEEEEECCSS
T ss_pred ccccccccccccee---------------------------------cccccccccCCCceeeecCCCCcEEEEEccccc
Confidence 22222111110000 011122333344333332 11 1233445
Q ss_pred ceEEEEECCCCcEEEEeCCCeEEEEcC-CCCeeeeeecCCccEEEEEecCCEEEEEecCcEEEEEeCC----------Cc
Q 003171 421 RTEALTTSIDGMIWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQCLCTFGSQIWVGYMNGIVQVLDLE----------GN 489 (842)
Q Consensus 421 ~v~al~~s~dg~l~Sgs~DgtIrlWD~-~g~~l~~l~~H~~~V~sls~dG~~LasGs~DgtIrlWD~~----------g~ 489 (842)
.+..+.+++ ..+++++.||+|++||+ +++++..+.+|...|.+++.++.+|++|+.||+|+|||+. ..
T Consensus 180 ~v~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~ 258 (293)
T d1p22a2 180 GIACLQYRD-RLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTL 258 (293)
T ss_dssp CEEEEEEET-TEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEECCSSEEEEEETTSCEEEEEHHHHTSTTSCTTTT
T ss_pred ccccccCCC-CeEEEecCCCEEEEEecccceeeeeecccceeeeeccccceEEEEEcCCCEEEEEECCCCccccccCCce
Confidence 565665543 35899999999999999 7889999999999999999999999999999999999953 13
Q ss_pred ccccccccccCEEEEEeCCCEEEEEcCCCCeeecc
Q 003171 490 LLGGWVAHSSPVIKMAVGAGYIFTLANHGGIRGWN 524 (842)
Q Consensus 490 ~i~~l~gH~~~V~sla~dg~~l~S~S~DgtIrvWd 524 (842)
+++++.+|.+.|++|++++++|+|+|.|++||+||
T Consensus 259 ~~~~~~~H~~~V~~v~~d~~~l~s~s~Dg~i~iWD 293 (293)
T d1p22a2 259 CLRTLVEHSGRVFRLQFDEFQIVSSSHDDTILIWD 293 (293)
T ss_dssp EEEEECCCSSCCCCEEECSSCEEECCSSSEEEEEC
T ss_pred eeEEecCCCCCEEEEEEcCCEEEEEecCCEEEEeC
Confidence 57889999999999999999999999999999997
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.95 E-value=9.4e-26 Score=235.37 Aligned_cols=285 Identities=14% Similarity=0.166 Sum_probs=210.7
Q ss_pred ceeEEEEec--CCEEEE-ecCCCEEEEeCCCCccccccccccccCCCCCCCCCCeeeeeecCCCeEEEEEcCCCCEEEEE
Q 003171 133 CFLRTIVCT--EEQLWA-GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSG 209 (842)
Q Consensus 133 ~~~~~l~~~--~~~l~~-~~D~~vrvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~V~~la~dpdg~~LaSG 209 (842)
..+.+|+.+ ++.|.+ +.|++|||||+.+...... + ..| ..+|.+++++|++.+++++
T Consensus 18 ~~I~~l~~sp~~~~l~s~s~Dg~i~iWd~~~~~~~~~-----------------~--~~h-~~~V~~~~~~~~~~~~~~~ 77 (317)
T d1vyhc1 18 SPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERT-----------------L--KGH-TDSVQDISFDHSGKLLASC 77 (317)
T ss_dssp SCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEE-----------------E--CCC-SSCEEEEEECTTSSEEEEE
T ss_pred CCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCEEEE-----------------E--eCC-CCcEEEEeeeccccccccc
Confidence 357778775 335555 5699999999976543211 1 123 7799999999999999999
Q ss_pred eCCCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCCC-EEEeeCCCcEEEEeCCCccceeecCCCceeeeEE
Q 003171 210 HRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEKALSLKPEERHTAAL 288 (842)
Q Consensus 210 s~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~~t~~~~l~~~~~~~~~~~l 288 (842)
..++++..|+.... .....+.+|...+.++.|++++. +++++.|+++++||+.++.....+.
T Consensus 78 ~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~--------- 140 (317)
T d1vyhc1 78 SADMTIKLWDFQGF--------ECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFT--------- 140 (317)
T ss_dssp ETTSCCCEEETTSS--------CEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEE---------
T ss_pred cccccccccccccc--------ccccccccccccceeeeccCCCceEEeeccCcceeEeecccceeeeEEc---------
Confidence 99999999998876 56677889999999999999998 7899999999999997654322211
Q ss_pred EEeeceeecccceeccceeeeecCCEEEEEEcCCCCEEEEeC-CCcEEEEEccCCcEEEEeecCCceEeeeecccCCCcc
Q 003171 289 IVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFA 367 (842)
Q Consensus 289 ~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s-~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~~ 367 (842)
++ ...+.+++..+++..+++++ +++|++||..+++++..+..+......+.+.+.....
T Consensus 141 ----------~~----------~~~~~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 200 (317)
T d1vyhc1 141 ----------GH----------REWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYS 200 (317)
T ss_dssp ----------CC----------SSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGG
T ss_pred ----------cC----------CCcceeeecccCCCEEEEEeCCCeEEEEeeccceeeEEEecCCCCceEEEEeeccccc
Confidence 11 34567778888888888776 6799999999999998888776655555544432221
Q ss_pred cccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEee--cC----ccccCCCceEEEEECCCCc-EEEEeCCC
Q 003171 368 MEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAA--KG----GFGDDNRRTEALTTSIDGM-IWTGGANG 440 (842)
Q Consensus 368 ~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~--~g----~~~~~~~~v~al~~s~dg~-l~Sgs~Dg 440 (842)
..... ...........+.....+..++..+++. .+ .+..|...|.+++++|++. |++|+.||
T Consensus 201 ~~~~~-----------~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg 269 (317)
T d1vyhc1 201 SISEA-----------TGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDK 269 (317)
T ss_dssp GGGGC-----------CSCC-------CCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSCEEEEETTT
T ss_pred eeecc-----------ccceeeeeccCCceeEeccCCCEEEEEECCCCcEEEEEeCCCCCEEEEEECCCCCEEEEEECCC
Confidence 10000 0000011122233445666777666654 22 3456788899999999987 88999999
Q ss_pred eEEEEcC-CCCeeeeeecCCccEEEEEe--cCCEEEEEecCcEEEEEe
Q 003171 441 LLLQWDP-NGNRLQDFQYLPFAVQCLCT--FGSQIWVGYMNGIVQVLD 485 (842)
Q Consensus 441 tIrlWD~-~g~~l~~l~~H~~~V~sls~--dG~~LasGs~DgtIrlWD 485 (842)
+|++||+ ++++++++.+|..+|+++++ +|++|++|+.||+|+|||
T Consensus 270 ~i~iwd~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~s~s~Dg~i~iWd 317 (317)
T d1vyhc1 270 TLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE 317 (317)
T ss_dssp EEEEECCTTSCCCEEEECCSSCEEEEEECSSSSCEEEEETTSEEEEEC
T ss_pred eEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEeC
Confidence 9999999 79999999999999999865 788999999999999997
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.95 E-value=1.6e-26 Score=249.92 Aligned_cols=240 Identities=19% Similarity=0.284 Sum_probs=186.9
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCCC-EEEeeCCCcEEEEeC
Q 003171 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPW 269 (842)
Q Consensus 191 ~~~V~~la~dpdg~~LaSGs~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~ 269 (842)
..+|.|++|+|+|++|+||+ ||+|++||+.++. ...........+|.++|++|+|+|+|+ |++|+.|++|++||+
T Consensus 51 ~~~V~~v~fs~~g~~latg~-dg~V~iWd~~~~~---~~~~~~~~~~~~h~~~I~~v~~s~dg~~l~s~~~dg~i~iwd~ 126 (337)
T d1gxra_ 51 GEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPG---NKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDL 126 (337)
T ss_dssp SSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTT---CCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEEC
T ss_pred CCcEEEEEECCCCCEEEEEE-CCEEEEEEccCCc---ccceeEEeeecCCCCcEEEEEEcCCCCEEEEeecccccccccc
Confidence 78999999999999999998 8999999998752 011122334578999999999999998 789999999999998
Q ss_pred CCccceeecCCCceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcCCCCEEEEeC-CCcEEEEEccCCcEEEEe
Q 003171 270 EAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVF 348 (842)
Q Consensus 270 ~t~~~~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s-~~tI~lWD~~tg~~l~~l 348 (842)
......... .+.++ ...+..++.++++..+++++ +..|++||+.++++....
T Consensus 127 ~~~~~~~~~-----------------~~~~~----------~~~v~~~~~~~~~~~l~s~~~d~~i~~~~~~~~~~~~~~ 179 (337)
T d1gxra_ 127 AAPTPRIKA-----------------ELTSS----------APACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQF 179 (337)
T ss_dssp CCC--EEEE-----------------EEECS----------SSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEE
T ss_pred ccccccccc-----------------ccccc----------ccccccccccccccccccccccccccccccccccccccc
Confidence 653221110 00111 34566777788888887766 578999999988764432
Q ss_pred ecCCceEeeeecccCCCcccccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEeecCccccCCCceEEEEEC
Q 003171 349 NIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTS 428 (842)
Q Consensus 349 ~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~al~~s 428 (842)
.. +...+.+++++
T Consensus 180 ~~-------------------------------------------------------------------~~~~v~~l~~s 192 (337)
T d1gxra_ 180 QG-------------------------------------------------------------------HTDGASCIDIS 192 (337)
T ss_dssp CC-------------------------------------------------------------------CSSCEEEEEEC
T ss_pred cc-------------------------------------------------------------------ccccccccccc
Confidence 21 22345567788
Q ss_pred CCCc-EEEEeCCCeEEEEcC-CCCeeeeeecCCccEEEEEe--cCCEEEEEecCcEEEEEeCCCcccccccccccCEEEE
Q 003171 429 IDGM-IWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQCLCT--FGSQIWVGYMNGIVQVLDLEGNLLGGWVAHSSPVIKM 504 (842)
Q Consensus 429 ~dg~-l~Sgs~DgtIrlWD~-~g~~l~~l~~H~~~V~sls~--dG~~LasGs~DgtIrlWD~~g~~i~~l~gH~~~V~sl 504 (842)
+++. +++|+.|++|++||+ ++++++.+ .|...|+++++ ++++|++|+.|+.|++||++........+|.+.|.++
T Consensus 193 ~~~~~~~~~~~d~~v~i~d~~~~~~~~~~-~~~~~i~~l~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~i~~v 271 (337)
T d1gxra_ 193 NDGTKLWTGGLDNTVRSWDLREGRQLQQH-DFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLHLHESCVLSL 271 (337)
T ss_dssp TTSSEEEEEETTSEEEEEETTTTEEEEEE-ECSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEEEECCCSSCEEEE
T ss_pred ccccccccccccccccccccccceeeccc-ccccceEEEEEcccccccceeccccccccccccccccccccccccccceE
Confidence 8876 789999999999999 68887776 47889999875 6889999999999999999855455677999999999
Q ss_pred Ee--CCCEEEEEcCCCCeeeccccCCC
Q 003171 505 AV--GAGYIFTLANHGGIRGWNVTSPG 529 (842)
Q Consensus 505 a~--dg~~l~S~S~DgtIrvWd~~~~~ 529 (842)
++ +++++++++.|++|++||+....
T Consensus 272 ~~s~~g~~l~s~s~Dg~i~iwd~~~~~ 298 (337)
T d1gxra_ 272 KFAYCGKWFVSTGKDNLLNAWRTPYGA 298 (337)
T ss_dssp EECTTSSEEEEEETTSEEEEEETTTCC
T ss_pred EECCCCCEEEEEeCCCeEEEEECCCCC
Confidence 84 78899999999999999976643
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=99.95 E-value=9.6e-27 Score=250.37 Aligned_cols=236 Identities=14% Similarity=0.096 Sum_probs=188.3
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCCC-EEEeeCCCcEEEEeC
Q 003171 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPW 269 (842)
Q Consensus 191 ~~~V~~la~dpdg~~LaSGs~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~ 269 (842)
.+.+.+++++|+|+.|+.++ ++.|.+|++.++ .....+.+|++.|++++|+|+|+ |+||+.||+|+|||+
T Consensus 17 r~~~~~~a~~~~g~~l~~~~-~~~v~i~~~~~~--------~~~~~~~~H~~~v~~~~~sp~g~~latg~~dg~i~iwd~ 87 (311)
T d1nr0a1 17 RGTAVVLGNTPAGDKIQYCN-GTSVYTVPVGSL--------TDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDT 87 (311)
T ss_dssp TTCCCCCEECTTSSEEEEEE-TTEEEEEETTCS--------SCCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEES
T ss_pred CCCeEEEEEcCCCCEEEEEe-CCEEEEEECCCC--------ceeEEEcCCCCCEEEEEEeCCCCeEeccccCceEeeeee
Confidence 44567889999999999985 567999999886 56677899999999999999998 789999999999999
Q ss_pred CCccceeecCCCceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcCCCCEEEEeCC---CcEEEEEccCCcEEE
Q 003171 270 EAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGF---LSFALWDARTRELLK 346 (842)
Q Consensus 270 ~t~~~~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s~---~tI~lWD~~tg~~l~ 346 (842)
.+....+... +.+| ...+.++++++++..++++++ ..+++||..+++.+.
T Consensus 88 ~~~~~~~~~~-----------------~~~~----------~~~v~~v~~s~d~~~l~~~~~~~~~~~~v~~~~~~~~~~ 140 (311)
T d1nr0a1 88 TQTTHILKTT-----------------IPVF----------SGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNG 140 (311)
T ss_dssp SSTTCCEEEE-----------------EECS----------SSCEEEEEECTTSCEEEEEECCSSCSEEEEETTTCCBCB
T ss_pred eccccccccc-----------------cccc----------cCccccccccccccccccccccccccccccccccccccc
Confidence 7754322110 1111 456888888888888887763 458999988765422
Q ss_pred EeecCCceEeeeecccCCCcccccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEeecCccccCCCceEEEE
Q 003171 347 VFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALT 426 (842)
Q Consensus 347 ~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~al~ 426 (842)
+ +..|...|.+++
T Consensus 141 ~-------------------------------------------------------------------l~~h~~~v~~v~ 153 (311)
T d1nr0a1 141 N-------------------------------------------------------------------LTGQARAMNSVD 153 (311)
T ss_dssp C-------------------------------------------------------------------CCCCSSCEEEEE
T ss_pred c-------------------------------------------------------------------cccccccccccc
Confidence 1 223445567788
Q ss_pred ECCCCc--EEEEeCCCeEEEEcC-CCCeeeeeecCCccEEEEEe--cCCEEEEEecCcEEEEEeCC-Cccc-------cc
Q 003171 427 TSIDGM--IWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQCLCT--FGSQIWVGYMNGIVQVLDLE-GNLL-------GG 493 (842)
Q Consensus 427 ~s~dg~--l~Sgs~DgtIrlWD~-~g~~l~~l~~H~~~V~sls~--dG~~LasGs~DgtIrlWD~~-g~~i-------~~ 493 (842)
|+|++. +++|+.|++|++||+ +++++..+.+|...|+++.. +|++|++|+.|+.|++||.. ++.+ ..
T Consensus 154 ~~~~~~~~l~sgs~d~~i~i~d~~~~~~~~~~~~~~~~i~~v~~~p~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~ 233 (311)
T d1nr0a1 154 FKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLK 233 (311)
T ss_dssp ECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSS
T ss_pred ccccceeeecccccccccccccccccccccccccccccccccccCccccccccccccccccccccccccccccccccccc
Confidence 998875 688999999999999 68899999999999999875 78999999999999999986 4332 23
Q ss_pred ccccccCEEEEEe--CCCEEEEEcCCCCeeeccccCCC
Q 003171 494 WVAHSSPVIKMAV--GAGYIFTLANHGGIRGWNVTSPG 529 (842)
Q Consensus 494 l~gH~~~V~sla~--dg~~l~S~S~DgtIrvWd~~~~~ 529 (842)
..+|.+.|+++++ ++++|+|+|.|++|++||+.+..
T Consensus 234 ~~~h~~~V~~~~~s~~~~~l~tgs~Dg~v~iwd~~t~~ 271 (311)
T d1nr0a1 234 NVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLK 271 (311)
T ss_dssp SCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTE
T ss_pred cccccccccccccCCCCCEEEEEeCCCeEEEEECCCCc
Confidence 4589999999985 78999999999999999987643
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.95 E-value=6.1e-27 Score=245.89 Aligned_cols=248 Identities=15% Similarity=0.152 Sum_probs=186.0
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCCCEEEeeCCCcEEEEeCC
Q 003171 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGDLWSGSEGGGIKIWPWE 270 (842)
Q Consensus 191 ~~~V~~la~dpdg~~LaSGs~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~L~SgS~DgtIrvWd~~ 270 (842)
..+|.||+++| |+||+.||+|++||+.++ .++|++.|.++++++++.++|+|.|++||+|+..
T Consensus 13 ~~~I~~l~~s~----l~sgs~Dg~v~~Wd~~~~-------------~~~h~~~V~~~~~~~~~~~~s~s~D~~v~~w~~~ 75 (287)
T d1pgua2 13 NKGITALTVNP----LISGSYDGRIMEWSSSSM-------------HQDHSNLIVSLDNSKAQEYSSISWDDTLKVNGIT 75 (287)
T ss_dssp SSCEEEEETTT----TEEEETTSCEEETTTTEE-------------ECCCCSCEEEEECCSTTCCEEEETTTEEEETTEE
T ss_pred CCceEEEEECc----EEEEeCCCeEEEEECCCC-------------CCCCCCCEEEEEecCCCeEEEEeecccccccccc
Confidence 88999999987 999999999999998764 2589999999999998889999999999999974
Q ss_pred CccceeecCCCceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcCCCCEEEEeCCCcEEEEEccCCcEEEEeec
Q 003171 271 AIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGFLSFALWDARTRELLKVFNI 350 (842)
Q Consensus 271 t~~~~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s~~tI~lWD~~tg~~l~~l~~ 350 (842)
..+ + ...+..++..+++..+.++.++.+.+|+..+++.++.+..
T Consensus 76 ~~~----~--------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (287)
T d1pgua2 76 KHE----F--------------------------------GSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRL 119 (287)
T ss_dssp EEE----C--------------------------------SSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEEC
T ss_pred ccc----c--------------------------------ccceeeeeeccCCceEEEeecccceeeeccceeeeeeccc
Confidence 311 1 1234455556666667777778899999999998887754
Q ss_pred CCceEeeeecccCCCcccccceEEEEEecCCCCccceeeeEeecCcceEEecCC-cEEEEee-c-----Cc-cccCCCce
Q 003171 351 DGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAAD-AVRRVAA-K-----GG-FGDDNRRT 422 (842)
Q Consensus 351 ~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~-~v~~v~~-~-----g~-~~~~~~~v 422 (842)
+.... . +.+.+...+++..+ ...+++. . .. ...+...+
T Consensus 120 ~~~~~---~-------------------------------~~~~~~~~~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v 165 (287)
T d1pgua2 120 NSPGS---A-------------------------------VSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKP 165 (287)
T ss_dssp SSCEE---E-------------------------------EEECSSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCE
T ss_pred cceee---e-------------------------------eeccCcceeeeccccceeeeeeccccceeeeeeeccCCce
Confidence 43221 1 11111112222222 2222221 0 01 12355678
Q ss_pred EEEEECCCCc-EEEEeCCCeEEEEcC-CCCee-eeeecCCccEEEEEe------------cCCEEEEEecCcEEEEEeCC
Q 003171 423 EALTTSIDGM-IWTGGANGLLLQWDP-NGNRL-QDFQYLPFAVQCLCT------------FGSQIWVGYMNGIVQVLDLE 487 (842)
Q Consensus 423 ~al~~s~dg~-l~Sgs~DgtIrlWD~-~g~~l-~~l~~H~~~V~sls~------------dG~~LasGs~DgtIrlWD~~ 487 (842)
.+++++|+|. |++|+.||.|++||+ +++.+ ..+.+|..+|+++++ ++.+|++|+.|++|+|||++
T Consensus 166 ~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~l~sgs~D~~i~iw~~~ 245 (287)
T d1pgua2 166 SYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVK 245 (287)
T ss_dssp EEEEECTTSSEEEEEETTSCEEEEETTTTEEEECCSCCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESS
T ss_pred eEEEeccCccccccccccccccceeecccccccccccccccccceeeecccccccccccCCCCeeEeecCCCeEEEEECC
Confidence 9999999998 889999999999999 56554 357789999999863 35699999999999999985
Q ss_pred --CcccccccccccCEEEEEe-CCCEEEEEcCCCCeeeccc
Q 003171 488 --GNLLGGWVAHSSPVIKMAV-GAGYIFTLANHGGIRGWNV 525 (842)
Q Consensus 488 --g~~i~~l~gH~~~V~sla~-dg~~l~S~S~DgtIrvWd~ 525 (842)
++++..+.+|.+.|+++++ ++..++|+|.|++||+|++
T Consensus 246 ~~~~~~~~~~~h~~~V~~v~~~~~~~l~s~g~D~~v~iW~i 286 (287)
T d1pgua2 246 RPMKIIKALNAHKDGVNNLLWETPSTLVSSGADACIKRWNV 286 (287)
T ss_dssp CTTCCEEETTSSTTCEEEEEEEETTEEEEEETTSCEEEEEE
T ss_pred CCCeEEEEeCCCCCCeEEEEECCCCEEEEEECCCeEEEEEE
Confidence 4678889999999999985 3457999999999999985
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.95 E-value=9.9e-27 Score=255.50 Aligned_cols=240 Identities=8% Similarity=0.029 Sum_probs=185.4
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCCC-EEEeeCCCcEEEEeC
Q 003171 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPW 269 (842)
Q Consensus 191 ~~~V~~la~dpdg~~LaSGs~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~ 269 (842)
..||.|++|+|+|++||+|+.||.|++|+..++. +.++..++||.++|++|+|+|+|+ |+|||.|++|+|||+
T Consensus 7 ~~pIt~~~~s~dg~~la~~~~~~~i~iw~~~~~~------~~~~~~l~gH~~~V~~l~fsp~~~~l~s~s~D~~i~vWd~ 80 (371)
T d1k8kc_ 7 VEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNK------WVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTL 80 (371)
T ss_dssp SSCCCEEEECTTSSEEEEECSSSEEEEEEEETTE------EEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEE
T ss_pred CCCeEEEEECCCCCEEEEEeCCCEEEEEECCCCC------EEEEEEecCCCCCEEEEEECCCCCEEEEEECCCeEEEEee
Confidence 4689999999999999999999999999998752 245677899999999999999998 789999999999999
Q ss_pred CCccceeecCCCceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcCCCCEEEEeC-CCcEEEEEccCCcEEEEe
Q 003171 270 EAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVF 348 (842)
Q Consensus 270 ~t~~~~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s-~~tI~lWD~~tg~~l~~l 348 (842)
.+....... .+.++ ...+.++.+++++..+++++ +++|++|+.........+
T Consensus 81 ~~~~~~~~~-----------------~~~~~----------~~~v~~i~~~p~~~~l~~~s~d~~i~i~~~~~~~~~~~~ 133 (371)
T d1k8kc_ 81 KGRTWKPTL-----------------VILRI----------NRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVC 133 (371)
T ss_dssp ETTEEEEEE-----------------ECCCC----------SSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEE
T ss_pred ccccccccc-----------------ccccc----------cccccccccccccccceeecccCcceeeeeecccccccc
Confidence 653211110 01111 34678888888888888776 678999987654321110
Q ss_pred ecCCceEeeeecccCCCcccccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEeecCccccCCCceEEEEEC
Q 003171 349 NIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTS 428 (842)
Q Consensus 349 ~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~al~~s 428 (842)
. . ....+...|.+++++
T Consensus 134 ~----------------------------~-----------------------------------~~~~~~~~v~~v~~~ 150 (371)
T d1k8kc_ 134 K----------------------------H-----------------------------------IKKPIRSTVLSLDWH 150 (371)
T ss_dssp E----------------------------E-----------------------------------ECTTCCSCEEEEEEC
T ss_pred c----------------------------c-----------------------------------ccccccccccccccc
Confidence 0 0 012344567788999
Q ss_pred CCCc-EEEEeCCCeEEEEcCC-C------------------CeeeeeecCCccEEEEE--ecCCEEEEEecCcEEEEEeC
Q 003171 429 IDGM-IWTGGANGLLLQWDPN-G------------------NRLQDFQYLPFAVQCLC--TFGSQIWVGYMNGIVQVLDL 486 (842)
Q Consensus 429 ~dg~-l~Sgs~DgtIrlWD~~-g------------------~~l~~l~~H~~~V~sls--~dG~~LasGs~DgtIrlWD~ 486 (842)
|+|+ |++|+.|++|++||.. + +++.+..+|...|++++ ++|++|++|+.|++|++||+
T Consensus 151 p~~~~l~s~s~D~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~ 230 (371)
T d1k8kc_ 151 PNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADA 230 (371)
T ss_dssp TTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEG
T ss_pred ccccceeccccCcEEEEEeeccCccccccccccccccccceeeeeeccCccCcEEEEEeecccccccccccCCcceEEee
Confidence 9987 7899999999999972 2 34556678999999886 47899999999999999998
Q ss_pred C-CcccccccccccCEEEEEe--CCCEEEEEcCCCCeeeccccC
Q 003171 487 E-GNLLGGWVAHSSPVIKMAV--GAGYIFTLANHGGIRGWNVTS 527 (842)
Q Consensus 487 ~-g~~i~~l~gH~~~V~sla~--dg~~l~S~S~DgtIrvWd~~~ 527 (842)
. ++++.++.+|..+|.++++ |++.+++ +.|+.+++|....
T Consensus 231 ~~~~~~~~~~~~~~~v~s~~fs~d~~~la~-g~d~~~~~~~~~~ 273 (371)
T d1k8kc_ 231 DKKMAVATLASETLPLLAVTFITESSLVAA-GHDCFPVLFTYDS 273 (371)
T ss_dssp GGTTEEEEEECSSCCEEEEEEEETTEEEEE-ETTSSCEEEEEET
T ss_pred ecccceeeeecccccceeeeecCCCCEEEE-EcCCceEEEEeeC
Confidence 7 7889999999999999874 6766665 4588888887543
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.95 E-value=1.2e-26 Score=254.80 Aligned_cols=295 Identities=13% Similarity=0.061 Sum_probs=202.6
Q ss_pred eeEEEEecC--CEEEE-ecCCCEEEEeCCCCccccccccccccCCCCCCCCCCeeeeeecCCCeEEEEEcCCCCEEEEEe
Q 003171 134 FLRTIVCTE--EQLWA-GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGH 210 (842)
Q Consensus 134 ~~~~l~~~~--~~l~~-~~D~~vrvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~V~~la~dpdg~~LaSGs 210 (842)
++.+++.+. +.|.+ +.|+.|+|||+++.... + ...+ ..| .++|.||+|+|++++|+||+
T Consensus 9 pIt~~~~s~dg~~la~~~~~~~i~iw~~~~~~~~-~--------------~~~l--~gH-~~~V~~l~fsp~~~~l~s~s 70 (371)
T d1k8kc_ 9 PISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWV-Q--------------VHEL--KEH-NGQVTGVDWAPDSNRIVTCG 70 (371)
T ss_dssp CCCEEEECTTSSEEEEECSSSEEEEEEEETTEEE-E--------------EEEE--ECC-SSCEEEEEEETTTTEEEEEE
T ss_pred CeEEEEECCCCCEEEEEeCCCEEEEEECCCCCEE-E--------------EEEe--cCC-CCCEEEEEECCCCCEEEEEE
Confidence 355666653 35544 45789999998643211 0 0011 123 78999999999999999999
Q ss_pred CCCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCCC-EEEeeCCCcEEEEeCCCccceeecCCCceeeeEEE
Q 003171 211 RDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALI 289 (842)
Q Consensus 211 ~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~~t~~~~l~~~~~~~~~~~l~ 289 (842)
.|++|++||+.++. ..+...+.+|...|++++|+|+++ |++|+.|++|++|+++..........
T Consensus 71 ~D~~i~vWd~~~~~------~~~~~~~~~~~~~v~~i~~~p~~~~l~~~s~d~~i~i~~~~~~~~~~~~~~--------- 135 (371)
T d1k8kc_ 71 TDRNAYVWTLKGRT------WKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKH--------- 135 (371)
T ss_dssp TTSCEEEEEEETTE------EEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEE---------
T ss_pred CCCeEEEEeecccc------cccccccccccccccccccccccccceeecccCcceeeeeecccccccccc---------
Confidence 99999999998752 134556789999999999999998 78999999999999865332111100
Q ss_pred EeeceeecccceeccceeeeecCCEEEEEEcCCCCEEEEeC-CCcEEEEEccCCcEEEEeecCCceEeeeecccCCCccc
Q 003171 290 VERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAM 368 (842)
Q Consensus 290 ~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s-~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~~~ 368 (842)
..+.+ ...+.++++++++..+++++ |++|++||+..+....... ... .
T Consensus 136 ------~~~~~----------~~~v~~v~~~p~~~~l~s~s~D~~v~v~~~~~~~~~~~~~----------~~~-----~ 184 (371)
T d1k8kc_ 136 ------IKKPI----------RSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPA----------PTP-----W 184 (371)
T ss_dssp ------ECTTC----------CSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCC----------CBT-----T
T ss_pred ------ccccc----------ccccccccccccccceeccccCcEEEEEeeccCccccccc----------ccc-----c
Confidence 00111 34678888888888888876 6899999987654211000 000 0
Q ss_pred ccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEeecCccccCCCceEEEEECCCCc-EEEEeCCCeEEEEcC
Q 003171 369 EDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGM-IWTGGANGLLLQWDP 447 (842)
Q Consensus 369 ~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~al~~s~dg~-l~Sgs~DgtIrlWD~ 447 (842)
... .. .+.... ....|...|.+++|+|+|. |++|+.|++|++||+
T Consensus 185 ---------~~~--~~-------------------~~~~~~----~~~~~~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~ 230 (371)
T d1k8kc_ 185 ---------GSK--MP-------------------FGELMF----ESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADA 230 (371)
T ss_dssp ---------BSC--CC-------------------TTCEEE----ECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEG
T ss_pred ---------ccc--cc-------------------ceeeee----eccCccCcEEEEEeecccccccccccCCcceEEee
Confidence 000 00 000000 1234667788999999987 889999999999999
Q ss_pred -CCCeeeeeecCCccEEEEE--ecCCEEEEEecCcEEEEEeC--C-Ccc--c----------------------------
Q 003171 448 -NGNRLQDFQYLPFAVQCLC--TFGSQIWVGYMNGIVQVLDL--E-GNL--L---------------------------- 491 (842)
Q Consensus 448 -~g~~l~~l~~H~~~V~sls--~dG~~LasGs~DgtIrlWD~--~-g~~--i---------------------------- 491 (842)
+++++.++.+|..+|++++ ++|++|++|+ |+.+++|+. . +++ .
T Consensus 231 ~~~~~~~~~~~~~~~v~s~~fs~d~~~la~g~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (371)
T d1k8kc_ 231 DKKMAVATLASETLPLLAVTFITESSLVAAGH-DCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKAS 309 (371)
T ss_dssp GGTTEEEEEECSSCCEEEEEEEETTEEEEEET-TSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCCC-
T ss_pred ecccceeeeecccccceeeeecCCCCEEEEEc-CCceEEEEeeCCCceEEEeeeecCccccccccccceeeEecccceeE
Confidence 7899999999999999885 5787777665 776666642 1 110 0
Q ss_pred ---------ccccccccCEEEEEe--C----CCEEEEEcCCCCeeeccccC
Q 003171 492 ---------GGWVAHSSPVIKMAV--G----AGYIFTLANHGGIRGWNVTS 527 (842)
Q Consensus 492 ---------~~l~gH~~~V~sla~--d----g~~l~S~S~DgtIrvWd~~~ 527 (842)
.....|.+.|++|++ . ...++|+|.||+||+||+++
T Consensus 310 ~~~~~~~~~~~~~~H~~~I~~i~~~~~~~~~~~~~~T~g~Dg~v~iW~~~~ 360 (371)
T d1k8kc_ 310 SEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRS 360 (371)
T ss_dssp --------CCCSSSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEHHH
T ss_pred EeccccccceecccccCCEEEEEEeCCCCcceEEEEEEcCCCeEEEEeCCc
Confidence 001249999999874 2 23688999999999999753
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.95 E-value=1.6e-25 Score=237.93 Aligned_cols=317 Identities=11% Similarity=0.134 Sum_probs=200.1
Q ss_pred eEEEEecCCEEEE-ecCCCEEEEeCCCCccccccccccccCCCCCCCCCCeeeeeecCCCeEEEEEcCCCCEEEEEeCCC
Q 003171 135 LRTIVCTEEQLWA-GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGHRDG 213 (842)
Q Consensus 135 ~~~l~~~~~~l~~-~~D~~vrvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~V~~la~dpdg~~LaSGs~DG 213 (842)
+.++..+++.|.+ +.|++|+|||+.+...... + ..| .++|.||+|+|+ ++|+||+.||
T Consensus 16 itc~~~~~~~l~tgs~Dg~i~vWd~~~~~~~~~-----------------l--~~H-~~~V~~l~~s~~-~~l~s~s~D~ 74 (355)
T d1nexb2 16 ITCLQFEDNYVITGADDKMIRVYDSINKKFLLQ-----------------L--SGH-DGGVWALKYAHG-GILVSGSTDR 74 (355)
T ss_dssp EEEEEEETTEEEEEETTTEEEEEETTTTEEEEE-----------------E--ECC-SSCEEEEEEETT-TEEEEEETTC
T ss_pred EEEEEECCCEEEEEeCCCeEEEEECCCCcEEEE-----------------E--ECC-CCCEEEEEEcCC-CEEEEEeccc
Confidence 4456778887776 4689999999976543211 1 234 789999999985 6899999999
Q ss_pred cEEEEECCCCccCCCCCcceeEEec--ccCCcEEEEEEecCCC-EEEeeCCCcEEEEeCCCccceeecCCCceeeeEEEE
Q 003171 214 RIMCWKMNARLLDSDDGFGEVLSWQ--AHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIV 290 (842)
Q Consensus 214 tIrlWdl~~g~~~~~~~~~~~~~l~--gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~~t~~~~l~~~~~~~~~~~l~~ 290 (842)
+|++|+.... ....... .+...+..+.+++++. +++++.|++|++|++.+........... .....
T Consensus 75 ~i~iw~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~-~~~~~-- 143 (355)
T d1nexb2 75 TVRVWDIKKG--------CCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEH-DYPLV-- 143 (355)
T ss_dssp CEEEEETTTT--------EEEEEECCCSSCEEEEEEEEETTEEEEEEEETTSEEEEEECCC------------CCCEE--
T ss_pred cccccccccc--------ccccccccccccccccccccccccceeeeecCCCcEEEEEccCCceeccccccc-eeccc--
Confidence 9999999886 3333333 3344556677888887 7899999999999997643221111000 00000
Q ss_pred eeceeecccceeccce--eeeecCCEEEEEEcCCCCEEEEeC-CCcEEEEEccCCcEEEEeecCCceEeeeecccCCCcc
Q 003171 291 ERSYIDLRSHLSVNGF--SSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFA 367 (842)
Q Consensus 291 ~~s~~~l~~~~~~~~~--~~~~s~~v~~las~~~~~~v~s~s-~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~~ 367 (842)
........... .......+.... .++..++.+. +..|++||+.+++.+..+..+.......
T Consensus 144 -----~~~~~~~~~~~~~~~~~~~~v~~~~--~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~--------- 207 (355)
T d1nexb2 144 -----FHTPEENPYFVGVLRGHMASVRTVS--GHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYST--------- 207 (355)
T ss_dssp -----ESCTTTCTTEEEEEECCSSCEEEEE--EETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEE---------
T ss_pred -----eeccccccceeeeeeeccccccccc--cccceeeeecccceeeeeecccccceeeeeccccccccc---------
Confidence 00000000000 000112222222 2344555544 6789999999998877765443322111
Q ss_pred cccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEee--c----CccccCCCceEEEEECCCCcEEEEeCCCe
Q 003171 368 MEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAA--K----GGFGDDNRRTEALTTSIDGMIWTGGANGL 441 (842)
Q Consensus 368 ~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~--~----g~~~~~~~~v~al~~s~dg~l~Sgs~Dgt 441 (842)
.+.+.+.....+..++..+++. . ..+..|...|.++++++ ..|++|+.||+
T Consensus 208 ----------------------~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~~~-~~l~~~~~dg~ 264 (355)
T d1nexb2 208 ----------------------IYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLSD-KFLVSAAADGS 264 (355)
T ss_dssp ----------------------EEETTTTEEEEEETTSCEEEEETTTCCEEEEECCCSSCCCEEEECS-SEEEEECTTSE
T ss_pred ----------------------cccccceeeecccccceEEeeecccccccccccccccccccccccc-ceeeeeecccc
Confidence 2222233344455555444443 1 13445777888888875 46899999999
Q ss_pred EEEEcC-CCCeeeeeecCCccEEE---EEecCCEEEEEecCcEEEEEeCC-Ccccc-cccccccCEEEEEeCCCE-EEEE
Q 003171 442 LLQWDP-NGNRLQDFQYLPFAVQC---LCTFGSQIWVGYMNGIVQVLDLE-GNLLG-GWVAHSSPVIKMAVGAGY-IFTL 514 (842)
Q Consensus 442 IrlWD~-~g~~l~~l~~H~~~V~s---ls~dG~~LasGs~DgtIrlWD~~-g~~i~-~l~gH~~~V~sla~dg~~-l~S~ 514 (842)
|++||+ ++.+ .+..|...+.+ +.+++.+|++| .|++|+|||++ |+++. .+.+|.+.|++++++++. ++++
T Consensus 265 i~iwd~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~~g-~d~~i~vwd~~tg~~~~~~~~~~~~~V~~v~~~~~~~~~~~ 341 (355)
T d1nexb2 265 IRGWDANDYSR--KFSYHHTNLSAITTFYVSDNILVSG-SENQFNIYNLRSGKLVHANILKDADQIWSVNFKGKTLVAAV 341 (355)
T ss_dssp EEEEETTTCCE--EEEEECTTCCCCCEEEECSSEEEEE-ETTEEEEEETTTCCBCCSCTTTTCSEEEEEEEETTEEEEEE
T ss_pred cccccccccce--ecccccCCceEEEEEcCCCCEEEEE-eCCEEEEEECCCCCEEEEEecCCCCCEEEEEEcCCeEEEEE
Confidence 999999 4543 45556665554 35567777765 58999999987 78775 678999999999987665 5578
Q ss_pred cCCCCeeeccc
Q 003171 515 ANHGGIRGWNV 525 (842)
Q Consensus 515 S~DgtIrvWd~ 525 (842)
|.||++++|.+
T Consensus 342 s~dg~~~l~~~ 352 (355)
T d1nexb2 342 EKDGQSFLEIL 352 (355)
T ss_dssp ESSSCEEEEEE
T ss_pred ECCCcEEEEEE
Confidence 89999777653
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.95 E-value=6.6e-26 Score=247.32 Aligned_cols=244 Identities=23% Similarity=0.304 Sum_probs=177.5
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCcc-----CC-----CCCcceeEEecccCCcEEEEEEecCCC-EEEee
Q 003171 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLL-----DS-----DDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGS 259 (842)
Q Consensus 191 ~~~V~~la~dpdg~~LaSGs~DGtIrlWdl~~g~~-----~~-----~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS 259 (842)
.++|+||+|+|+|++|+||+ |++|++||+.++.. .. ...........+|...|++|+|+|+|+ |++|+
T Consensus 62 ~~~V~~l~fs~dg~~lasg~-d~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~~l~s~~ 140 (388)
T d1erja_ 62 TSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGA 140 (388)
T ss_dssp SSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEEEEE
T ss_pred CCcEEEEEECCCCCEEEEEe-CCeEEEEEecccceEeeecccccccccccccccccccCCCCCEEEEEECCCCCcceecc
Confidence 88999999999999999997 89999999988621 00 000000112346788899999999998 78999
Q ss_pred CCCcEEEEeCCCccceeecCCCceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcCCCCEEEEeC-CCcEEEEE
Q 003171 260 EGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWD 338 (842)
Q Consensus 260 ~DgtIrvWd~~t~~~~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s-~~tI~lWD 338 (842)
.||+|++|+...++..... .+| ...+.++...+.+..+.+++ ++.+++||
T Consensus 141 ~dg~v~i~~~~~~~~~~~~-------------------~~h----------~~~v~~~~~~~~~~~~~~~~~~~~i~~~d 191 (388)
T d1erja_ 141 EDRLIRIWDIENRKIVMIL-------------------QGH----------EQDIYSLDYFPSGDKLVSGSGDRTVRIWD 191 (388)
T ss_dssp TTSCEEEEETTTTEEEEEE-------------------CCC----------SSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred ccccccccccccccccccc-------------------ccc----------cccccccccccccccccccccceeeeeee
Confidence 9999999998764322211 111 44577777777777777665 57899999
Q ss_pred ccCCcEEEEeecCCceEeeeecccCCCcccccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEeecCccccC
Q 003171 339 ARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDD 418 (842)
Q Consensus 339 ~~tg~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~ 418 (842)
..+...+.....+..
T Consensus 192 ~~~~~~~~~~~~~~~----------------------------------------------------------------- 206 (388)
T d1erja_ 192 LRTGQCSLTLSIEDG----------------------------------------------------------------- 206 (388)
T ss_dssp TTTTEEEEEEECSSC-----------------------------------------------------------------
T ss_pred ccccccccccccccc-----------------------------------------------------------------
Confidence 988766443322110
Q ss_pred CCceEEEEECCCCc-EEEEeCCCeEEEEcC-CCCeeeee-------ecCCccEEEEEe--cCCEEEEEecCcEEEEEeCC
Q 003171 419 NRRTEALTTSIDGM-IWTGGANGLLLQWDP-NGNRLQDF-------QYLPFAVQCLCT--FGSQIWVGYMNGIVQVLDLE 487 (842)
Q Consensus 419 ~~~v~al~~s~dg~-l~Sgs~DgtIrlWD~-~g~~l~~l-------~~H~~~V~sls~--dG~~LasGs~DgtIrlWD~~ 487 (842)
.+....+++++. +++|+.|+.|++||. ++..+..+ .+|...|+++.+ +|++|++|+.|++|++||+.
T Consensus 207 --~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~ 284 (388)
T d1erja_ 207 --VTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQ 284 (388)
T ss_dssp --EEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred --cccccccCCCCCeEEEEcCCCeEEEeecccCccceeeccccccccCCCCCEEEEEECCCCCEEEEEECCCcEEEEecc
Confidence 011122334555 789999999999999 67766554 368899999865 78999999999999999974
Q ss_pred -C------------cccccccccccCEEEEEe--CCCEEEEEcCCCCeeeccccCCCCC
Q 003171 488 -G------------NLLGGWVAHSSPVIKMAV--GAGYIFTLANHGGIRGWNVTSPGPL 531 (842)
Q Consensus 488 -g------------~~i~~l~gH~~~V~sla~--dg~~l~S~S~DgtIrvWd~~~~~~~ 531 (842)
+ .+......|...|.++++ ++++|++|+.||+|++||+.+..++
T Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~ 343 (388)
T d1erja_ 285 NANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPL 343 (388)
T ss_dssp --------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEE
T ss_pred CCccccccccccccceeeecccccceEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEE
Confidence 2 134566789999999984 7889999999999999998776543
|
| >d2imqx1 d.151.1.2 (X:3-282) Salivary nitrophorin {Bedbug (Cimex lectularius) [TaxId: 79782]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: DNase I-like superfamily: DNase I-like family: Inositol polyphosphate 5-phosphatase (IPP5) domain: Salivary nitrophorin species: Bedbug (Cimex lectularius) [TaxId: 79782]
Probab=99.94 E-value=2e-27 Score=251.02 Aligned_cols=232 Identities=18% Similarity=0.284 Sum_probs=181.9
Q ss_pred cceeEEEEEEEeCCCCCCcccccccccC-CCCCceEEEEEeecccCccchhhhhhhhhhcccCCCcchhhHHHHHhhhcc
Q 003171 550 ENLKILAGTWNVGQGRASQDALISWLGS-AASDVGIVVVGLQEVEMGAGFLAMSAAKETVGLEGSAVGHWWLDMIGKILD 628 (842)
Q Consensus 550 ~~~~i~~~twNv~~~~~~~~~l~~~l~~-~~~~~di~viglQE~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~l~~~l~ 628 (842)
..++|.++|||||+.+++ .++.+|+.. ...+||||||||||+.+... .....+.|...+.+.++
T Consensus 3 ~~~~v~I~TwNv~~~~~~-~~~~~~l~~i~~~~pDI~vI~lQE~~~~~~--------------~~~~~~~~~~~~~~~~~ 67 (280)
T d2imqx1 3 AQLSVHTVSWNSGHERAP-TNLEELLGLNSGETPDVIAVAVQGFGFQTD--------------KPQQGPACVKNFQSLLT 67 (280)
T ss_dssp SEEEEEEEEEEEETCCCC-SCCHHHHTCTTSCCCSEEEEEEEESCTTTC--------------TTCCHHHHHHHHHHHHH
T ss_pred CceEEEEEEECCCCCcCC-cCHHHHhcccccCCCCEEEEEeEecCcccc--------------ccchhHHHHHHHHHHhc
Confidence 467899999999987764 456777764 24679999999999965321 11233668888877774
Q ss_pred CCCceEEEeeeeceeeEEEEEEeccccCccCceeeceeecccCcccCCCCeeEEEEEEeCeEEEEEeecCcCCcchHHHH
Q 003171 629 DGSTFERVGSRQLAGLLIAVWVRKNLKDYVGDVDVAAVPCGFGRAIGNKGAVGLRVRVYDRIMCFVNCHFAAHLEAVNRR 708 (842)
Q Consensus 629 ~~~~y~~v~s~~l~g~~l~vf~r~~~~~~i~~v~~~~v~~G~~~~~gnKG~v~i~~~i~~~~~~Fv~~HLaa~~~~~~~R 708 (842)
...|..+...+++++.+++|+|.++..+. +....+.+|+++.++|||+|.+++.+.++.|+|+|+||.++..+..+|
T Consensus 68 -~~~y~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~v~~~~~i~~~~~~~in~hl~~~~~~~~~~ 144 (280)
T d2imqx1 68 -SKGYTKLKNTITETMGLTVYCLEKHLDQN--TLKNETIIVTVDDQKKSGGIVTSFTIYNKRFSFTTSRMSDEDVTSTNT 144 (280)
T ss_dssp -HTTEEEEEEEECSSEEEEEEEEGGGCCTT--TCCCEEEEEECSTTSCSEEEEEEEEETTEEEEEEEEECCTTCCCTTSS
T ss_pred -cCCeeEEEeeeeeceEEEEEEcccccccc--eecceeEeccCCcccCCcEEEEEEEECCEEEEeecccCCccchhHHHH
Confidence 35799999999999999999999998664 445567778888899999999999999999999999999887664444
Q ss_pred HHHHHHHHHhcCcCCCCCccchhccCCCceeeecccCCCCCCCccCCCCCcCcccEEEEeccceeeecCCChHHHHHHhh
Q 003171 709 NADFDHVYRTMTFCRPSNLCSAAAAGASSVVQMLRSTNPLSGLTVEGVPELSEADMVIFLGDFNYRLDGITYDEARDFIS 788 (842)
Q Consensus 709 n~~~~~I~~~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vf~~GDlNyRi~~~~~~~~~~~i~ 788 (842)
..+.... . ........++++||+||||+|.+. ......+.+.
T Consensus 145 ~~~~~~~--~-----------------------------------~~~~~~~~~~~vi~~GD~N~~~~~-~~~~~~~~~~ 186 (280)
T d2imqx1 145 KYAYDTR--L-----------------------------------DYSKKDDPSDFLFWIGDLNVRVET-NATHAKSLVD 186 (280)
T ss_dssp SSSCCGG--G-----------------------------------CTTSSSSCCSEEEEEEECSCCBCS-CHHHHHHHHH
T ss_pred HHHHHHh--h-----------------------------------hhhhhccCCCeeEEeccccccccc-ccHHHHhhhh
Confidence 2221100 0 001123467899999999999997 7778888888
Q ss_pred hcchHHHHHhhhHHHHhhcCCcccCcccCCCCCCCCcccccCCCCCCccccCC
Q 003171 789 QRCFDWLRERDQLRAEMEAGNVFQGMREADIKFPPTYKFEKHLAGLAEACSCL 841 (842)
Q Consensus 789 ~~~~~~L~~~DQL~~~~~~~~~f~gf~E~~I~F~PTYK~~~~~~~~~~Ydt~~ 841 (842)
...++.++..|||.... .+.+|.+|.|++++|.||||+..+. +.|+.++
T Consensus 187 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ft~~~~~~~~~---~~~~~~R 235 (280)
T d2imqx1 187 QNNIDGLMAFDQLKKAK-EQKLFDGWTEPQVTFKPTYKFKPNT---DEYDLSA 235 (280)
T ss_dssp TTCHHHHHTTBTHHHHH-HTTSSTTCBCCCCCSCCCBCBCTTS---SCBCTTS
T ss_pred cccchhhHHHHHHHHhh-hcchhhccccCCCCCCCcccccCcc---ccCCCcc
Confidence 88999999999998875 5789999999999999999999887 5777665
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.94 E-value=1.2e-25 Score=242.58 Aligned_cols=242 Identities=15% Similarity=0.184 Sum_probs=176.9
Q ss_pred CCCeEEEEEcC--CCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCCC-EEEe--eCCCcEE
Q 003171 191 VSSVMCMVGDE--ASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSG--SEGGGIK 265 (842)
Q Consensus 191 ~~~V~~la~dp--dg~~LaSGs~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~Sg--S~DgtIr 265 (842)
..+|.|++|+| +|.+|+||+.||+||+||+..+.............+..|.++|.+|+|+++|+ |+++ +.|+.++
T Consensus 63 ~~~v~~v~fsP~~~g~~lasgs~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~~~~~~~~ 142 (325)
T d1pgua1 63 SSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGV 142 (325)
T ss_dssp TSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEE
T ss_pred CCCEEEEEEeeCCCCCEEEEEeCCCCEEEeeecCCcceeeeecccccccccccCcEEEEEECCCCCccceeeccccceEE
Confidence 56899999997 67899999999999999987642100000111233567999999999999998 5544 4578999
Q ss_pred EEeCCCccceeecCCCceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcCCCC-EEEEeC-CCcEEEEEccCCc
Q 003171 266 IWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRA-KVWSAG-FLSFALWDARTRE 343 (842)
Q Consensus 266 vWd~~t~~~~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~-~v~s~s-~~tI~lWD~~tg~ 343 (842)
+|+++++.....+. +| ...+.++++.+.+. .+.+++ ++.+++||..+++
T Consensus 143 ~~~~~~~~~~~~~~-------------------~h----------~~~v~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~ 193 (325)
T d1pgua1 143 FISWDSGNSLGEVS-------------------GH----------SQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFK 193 (325)
T ss_dssp EEETTTCCEEEECC-------------------SC----------SSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBE
T ss_pred EEeecccccceeee-------------------ec----------ccccccccccccccceEEEeecccccccccccccc
Confidence 99997654322221 12 34567777776654 455554 6889999988765
Q ss_pred EEEEeecCCceEeeeecccCCCcccccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEeecCccccCCCceE
Q 003171 344 LLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTE 423 (842)
Q Consensus 344 ~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~ 423 (842)
....+.. +..+...|.
T Consensus 194 ~~~~~~~----------------------------------------------------------------~~~~~~~v~ 209 (325)
T d1pgua1 194 FSASDRT----------------------------------------------------------------HHKQGSFVR 209 (325)
T ss_dssp EEEEECS----------------------------------------------------------------SSCTTCCEE
T ss_pred cceeccc----------------------------------------------------------------ccCCCCccE
Confidence 4332210 123345577
Q ss_pred EEEECCCC-c-EEEEeCCCeEEEEcC-CCCeeeeeecCCccEE----EEE-ecCCEEEEEecCcEEEEEeCC-Ccccccc
Q 003171 424 ALTTSIDG-M-IWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQ----CLC-TFGSQIWVGYMNGIVQVLDLE-GNLLGGW 494 (842)
Q Consensus 424 al~~s~dg-~-l~Sgs~DgtIrlWD~-~g~~l~~l~~H~~~V~----sls-~dG~~LasGs~DgtIrlWD~~-g~~i~~l 494 (842)
+++|+||+ . +++|+.|++|++||+ ++++++++.+|..+|. +++ ++|++|++|+.|++|+|||++ +++++.+
T Consensus 210 ~v~~~pd~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~~~~~v~~~~~s~~~~dg~~l~s~s~D~~i~iwd~~~~~~~~~~ 289 (325)
T d1pgua1 210 DVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKW 289 (325)
T ss_dssp EEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEESSSSEEEEEETTSEEEEEETTTTEEEEEE
T ss_pred EeeeccccceeccccccccceeeeeeccccccccccccccccccceeeeeccCCCEEEEEeCCCeEEEEECCCCCEEEEE
Confidence 88999873 4 789999999999999 7999999999888765 443 479999999999999999997 7888888
Q ss_pred cccccCE----EEEEe-CCCEEEEEcCCCCeeeccc
Q 003171 495 VAHSSPV----IKMAV-GAGYIFTLANHGGIRGWNV 525 (842)
Q Consensus 495 ~gH~~~V----~sla~-dg~~l~S~S~DgtIrvWd~ 525 (842)
..|...+ .++.+ ...+++|+|.||+|++||+
T Consensus 290 ~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~vwdl 325 (325)
T d1pgua1 290 TLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYEL 325 (325)
T ss_dssp ECCTTCGGGCEEEEEEEETTEEEEEETTSCEEEEET
T ss_pred EecCCcccCeEEEEEECCCCEEEEEECCCEEEEEEC
Confidence 7766542 34444 4568999999999999985
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.92 E-value=6.9e-23 Score=217.15 Aligned_cols=269 Identities=16% Similarity=0.152 Sum_probs=197.0
Q ss_pred ceeEEEEecCC--EEEE-ecCCCEEEEeCCCCccccccccccccCCCCCCCCCCeeeeeecCCCeEEEEEcCCCCEEEEE
Q 003171 133 CFLRTIVCTEE--QLWA-GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSG 209 (842)
Q Consensus 133 ~~~~~l~~~~~--~l~~-~~D~~vrvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~V~~la~dpdg~~LaSG 209 (842)
..+.+|+.+.+ .|.+ +.|++|+|||+.+..... ....| ..+|.+++|+|++.++++|
T Consensus 56 ~~I~~l~~s~~~~~l~sgs~Dg~v~iWd~~~~~~~~-------------------~~~~~-~~~v~~v~~~~~~~~l~~~ 115 (340)
T d1tbga_ 56 AKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVH-------------------AIPLR-SSWVMTCAYAPSGNYVACG 115 (340)
T ss_dssp SCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEE-------------------EEECS-CSCEEEEEECTTSSEEEEE
T ss_pred CCEEEEEECCCCCEEEEEECCCceeeeecccceeEE-------------------EEecc-cccEEeeEeeccceeeeee
Confidence 35778887644 4554 569999999997654321 11234 7799999999999999999
Q ss_pred eCCCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCCCEEEeeCCCcEEEEeCCCccceeecCCCceeeeEEE
Q 003171 210 HRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGDLWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALI 289 (842)
Q Consensus 210 s~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~L~SgS~DgtIrvWd~~t~~~~l~~~~~~~~~~~l~ 289 (842)
+.|+++++|+..... ........+.+|...+.......+..+..+..|.+.+.|............
T Consensus 116 ~~d~~i~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------- 181 (340)
T d1tbga_ 116 GLDNICSIYNLKTRE----GNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFT---------- 181 (340)
T ss_dssp ETTCCEEEEESSSSC----SCCCEEEEECCCSSCEEEEEEEETTEEEEEETTTEEEEEETTTTEEEEEEE----------
T ss_pred cccceeecccccccc----cccccceeccccccccccccccccccccccccccccccccccccccccccc----------
Confidence 999999999987642 223455678899999888888877778899999999999875532111100
Q ss_pred EeeceeecccceeccceeeeecCCEEEEEEcCCCCEEEEeC-CCcEEEEEccCCcEEEEeecCCceEeeeecccCCCccc
Q 003171 290 VERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAM 368 (842)
Q Consensus 290 ~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s-~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~~~ 368 (842)
.....+......+....++++. +++|++||+++++++.++..|...+..+.+
T Consensus 182 -------------------~~~~~~~~~~~~~~~~~~~~~~~d~~v~i~d~~~~~~~~~~~~h~~~i~~v~~-------- 234 (340)
T d1tbga_ 182 -------------------GHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICF-------- 234 (340)
T ss_dssp -------------------CCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEECCCSSCEEEEEE--------
T ss_pred -------------------ccceeEeeeccccccceeEEeecCceEEEEECCCCcEEEEEeCCCCCeEEEEE--------
Confidence 0123455556666666666655 678999999999999888776554333333
Q ss_pred ccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEeecC--------ccccCCCceEEEEECCCCc-EEEEeCC
Q 003171 369 EDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKG--------GFGDDNRRTEALTTSIDGM-IWTGGAN 439 (842)
Q Consensus 369 ~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g--------~~~~~~~~v~al~~s~dg~-l~Sgs~D 439 (842)
.+++...++|..++..+++... ....+...+.+++++|++. |++|+.|
T Consensus 235 -----------------------~p~~~~l~s~s~d~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~d 291 (340)
T d1tbga_ 235 -----------------------FPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDD 291 (340)
T ss_dssp -----------------------CTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECSSSCEEEEEETT
T ss_pred -----------------------CCCCCEEEEEeCCCeEEEEeecccccccccccccccCceEEEEECCCCCEEEEEECC
Confidence 3333344555555555444310 1223556788999999987 7899999
Q ss_pred CeEEEEcC-CCCeeeeeecCCccEEEEEe--cCCEEEEEecCcEEEEEe
Q 003171 440 GLLLQWDP-NGNRLQDFQYLPFAVQCLCT--FGSQIWVGYMNGIVQVLD 485 (842)
Q Consensus 440 gtIrlWD~-~g~~l~~l~~H~~~V~sls~--dG~~LasGs~DgtIrlWD 485 (842)
|+|++||+ +++++.++.+|..+|+++++ +|++|++|+.||+|+|||
T Consensus 292 g~i~iwd~~~~~~~~~~~~H~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd 340 (340)
T d1tbga_ 292 FNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp SCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred CEEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEccCCEEEEeC
Confidence 99999999 79999999999999999865 788999999999999997
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.92 E-value=4.5e-23 Score=217.61 Aligned_cols=268 Identities=16% Similarity=0.244 Sum_probs=175.9
Q ss_pred ceeEEecccCCcEEEEEEecCCC-EEEeeCCCcEEEEeCCCccceeecCCCceeeeEEEEeeceeecccceeccceeeee
Q 003171 232 GEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSIL 310 (842)
Q Consensus 232 ~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~~t~~~~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~ 310 (842)
+....|+||+++|.+ +++++|+ |+|||.||+|||||+.+++...++. +|
T Consensus 7 ~~~~~l~GH~~~V~s-~~~~~g~~l~sgs~Dg~i~vWd~~~~~~~~~~~-------------------~h---------- 56 (342)
T d2ovrb2 7 KSPKVLKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLV-------------------GH---------- 56 (342)
T ss_dssp CCCEEEECSTTSCEE-EEEEETTEEEEEETTSCEEEEETTTCCEEEECC-------------------CC----------
T ss_pred CcCEEECCcCCceEE-EEEECCCEEEEEeCCCeEEEEECCCCCEEEEEe-------------------CC----------
Confidence 667789999999866 4677787 8999999999999998765432222 22
Q ss_pred cCCEEEEEEcCCCCEEEEeC-CCcEEEEEccCCcEEEEeecCCceEeeeecccCCCcccccceEEEEEecCCCCcc----
Q 003171 311 TSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKA---- 385 (842)
Q Consensus 311 s~~v~~las~~~~~~v~s~s-~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~---- 385 (842)
...|.++.+.+ ..+++++ |+++++|+................................+..+.++........
T Consensus 57 ~~~V~~v~~~~--~~l~s~s~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~ 134 (342)
T d2ovrb2 57 TGGVWSSQMRD--NIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLM 134 (342)
T ss_dssp SSCEEEEEEET--TEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEESSSCCEEEEEE
T ss_pred CCCEEEEEeCC--CccccceecccccccccccccceecccccceeEeeeecccccccccccceeEEEeecccccceeeee
Confidence 34566677654 3666665 6899999998877655443332211111111100000001111112221100000
Q ss_pred ---ceeeeEeecCcceEEecCCcEEEEeec------CccccCCCceEEEEECCCCc-EEEEeCCCeEEEEcC-CCCeeee
Q 003171 386 ---QSSFGFFQRSRNAIMGAADAVRRVAAK------GGFGDDNRRTEALTTSIDGM-IWTGGANGLLLQWDP-NGNRLQD 454 (842)
Q Consensus 386 ---~~s~~~~~~~~~~~~g~~~~v~~v~~~------g~~~~~~~~v~al~~s~dg~-l~Sgs~DgtIrlWD~-~g~~l~~ 454 (842)
.............+.+..++..+++.. ..+..+...+..+. +++. +++|+.||+|++||+ .++++++
T Consensus 135 ~~~~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~--~~~~~l~s~~~dg~i~~~d~~~~~~~~~ 212 (342)
T d2ovrb2 135 GHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQ--FDGIHVVSGSLDTSIRVWDVETGNCIHT 212 (342)
T ss_dssp CCSSCEEEEEECSSCEEEEETTSCEEEEEGGGTEEEEEECCCSSCEEEEE--ECSSEEEEEETTSCEEEEETTTCCEEEE
T ss_pred cccccceeeccccceeeeecCCCeEEEeecccceeeEEEcCccccccccc--CCCCEEEEEeCCCeEEEeecccceeeeE
Confidence 001122223345566666666666541 12334444444443 4554 899999999999999 7899999
Q ss_pred eecCCccEEEEEecCCEEEEEecCcEEEEEeCC-Ccc---cccccccccCEEEEEeCCCEEEEEcCCCCeeeccccCCCC
Q 003171 455 FQYLPFAVQCLCTFGSQIWVGYMNGIVQVLDLE-GNL---LGGWVAHSSPVIKMAVGAGYIFTLANHGGIRGWNVTSPGP 530 (842)
Q Consensus 455 l~~H~~~V~sls~dG~~LasGs~DgtIrlWD~~-g~~---i~~l~gH~~~V~sla~dg~~l~S~S~DgtIrvWd~~~~~~ 530 (842)
+.+|...|.++++++++|++|+.|++|++||.. .+. +.....|...+.++.++++++++++.||+|++||+.+...
T Consensus 213 ~~~~~~~v~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~Dg~i~iwd~~tg~~ 292 (342)
T d2ovrb2 213 LTGHQSLTSGMELKDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEF 292 (342)
T ss_dssp ECCCCSCEEEEEEETTEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEECSSEEEEEETTSEEEEEETTTCCE
T ss_pred ecccccceeEEecCCCEEEEEcCCCEEEEEecccccccccccccceeeeceeecccCCCeeEEEcCCCEEEEEECCCCCE
Confidence 999999999999999999999999999999986 443 3444567889999999999999999999999999987654
Q ss_pred Ccc
Q 003171 531 LDS 533 (842)
Q Consensus 531 ~d~ 533 (842)
+..
T Consensus 293 i~~ 295 (342)
T d2ovrb2 293 IRN 295 (342)
T ss_dssp EEE
T ss_pred EEE
Confidence 443
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.92 E-value=3e-23 Score=229.19 Aligned_cols=276 Identities=13% Similarity=0.133 Sum_probs=178.3
Q ss_pred eeEEEEecCCEEEE-ecCCCEEEEeCCCCccccccccccccCCCCCCCCCCeeeeeecCCC------eEEEEEcC-CCCE
Q 003171 134 FLRTIVCTEEQLWA-GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSS------VMCMVGDE-ASGV 205 (842)
Q Consensus 134 ~~~~l~~~~~~l~~-~~D~~vrvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~------V~~la~dp-dg~~ 205 (842)
.+.+++.+++.+.+ +.|++|||||..+...... .........+ ... ..++..+. ++.+
T Consensus 16 ~I~~v~~~~~~l~S~S~D~~iriWd~~~~~~~~~-------------~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 81 (393)
T d1sq9a_ 16 DIFSVSACNSFTVSCSGDGYLKVWDNKLLDNENP-------------KDKSYSHFVH-KSGLHHVDVLQAIERDAFELCL 81 (393)
T ss_dssp CEEEEEECSSEEEEEETTSEEEEEESBCCTTCCG-------------GGGEEEEECC-TTCEEEEEEEEEEETTTEEEEE
T ss_pred ccEEEEEeCCEEEEEECCCeEEEEECCCCCCCcc-------------cceeEeeeec-cCCceEeeeEeeeccCCCCCcE
Confidence 46677777777665 6799999999865432111 0000000011 111 12222221 2357
Q ss_pred EEEEeCCCcEEEEECCCCccCCCCCcceeE-------EecccCCcEEEEEEecCC-----C-EEEeeCCCcEEEEeCCCc
Q 003171 206 VWSGHRDGRIMCWKMNARLLDSDDGFGEVL-------SWQAHRGPVLSLCISSYG-----D-LWSGSEGGGIKIWPWEAI 272 (842)
Q Consensus 206 LaSGs~DGtIrlWdl~~g~~~~~~~~~~~~-------~l~gH~~~V~slafs~dG-----~-L~SgS~DgtIrvWd~~t~ 272 (842)
+++++.||+|++|++.... . ..... ....|...+.++++.+++ . +++++.||+|++|++...
T Consensus 82 ~~s~~~dg~v~~w~~~~~~----~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~~~~ 156 (393)
T d1sq9a_ 82 VATTSFSGDLLFYRITRED----E-TKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPF 156 (393)
T ss_dssp EEEEETTSCEEEEEEEECT----T-TCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESS
T ss_pred EEEEeCCCcEEEEEccCCC----c-eeeeeccccceeeeccCCCceEEEEEecCCCcccccEEEEEcCCCcEEEEEeecC
Confidence 8899999999999976542 0 01111 112456678888888764 2 689999999999998542
Q ss_pred cce-eecCCCceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcCCCCEEEEeC-CCcEEEEEccCCcEEEEeec
Q 003171 273 EKA-LSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVFNI 350 (842)
Q Consensus 273 ~~~-l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s-~~tI~lWD~~tg~~l~~l~~ 350 (842)
... ............+ ...... .......+.++++++++ .+++++ |++|+|||+.+++++..+..
T Consensus 157 ~~~~~~~~~~~~~~~~~--~~~~~~----------~~~~~~~~~~v~~s~dg-~lasgs~Dg~i~iwd~~~~~~~~~~~~ 223 (393)
T d1sq9a_ 157 ADESNSLTLNWSPTLEL--QGTVES----------PMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFES 223 (393)
T ss_dssp SSHHHHTTTCCCCEEEE--EEEECC----------SSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEEC
T ss_pred Ccccceeeeeeccceec--ccceec----------ccCCCCcEEEEEECCCC-EEEEEeCCCcEEEEeeccccccccccc
Confidence 211 1111100000000 000000 00012335677887765 777776 68999999999988765532
Q ss_pred CCceEeeeecccCCCcccccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEeecCccccCCCceEEEEECCC
Q 003171 351 DGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSID 430 (842)
Q Consensus 351 ~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~al~~s~d 430 (842)
.. .+.+|...|.+++|+||
T Consensus 224 ~~-------------------------------------------------------------~l~~h~~~V~~l~~spd 242 (393)
T d1sq9a_ 224 QH-------------------------------------------------------------SMINNSNSIRSVKFSPQ 242 (393)
T ss_dssp CC----------------------------------------------------------------CCCCCEEEEEECSS
T ss_pred cc-------------------------------------------------------------ccccccceEEEcccccc
Confidence 10 13356677889999999
Q ss_pred Cc-EEEEeCCCe---EEEEcC-CCCeeeeee-------------cCCccEEEEEe--cCCEEEEEecCcEEEEEeCC-Cc
Q 003171 431 GM-IWTGGANGL---LLQWDP-NGNRLQDFQ-------------YLPFAVQCLCT--FGSQIWVGYMNGIVQVLDLE-GN 489 (842)
Q Consensus 431 g~-l~Sgs~Dgt---IrlWD~-~g~~l~~l~-------------~H~~~V~sls~--dG~~LasGs~DgtIrlWD~~-g~ 489 (842)
|+ |++|+.|++ |++||+ +|+++.++. +|..+|+++++ +|++|++|+.|++|+|||++ |+
T Consensus 243 g~~l~sgs~D~t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~~l~S~s~D~~v~vWd~~~g~ 322 (393)
T d1sq9a_ 243 GSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKE 322 (393)
T ss_dssp TTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTE
T ss_pred cceeeeecCCCCcceeeecccccceeeeeeccccccccceeeeecccCceeeeccCCCCCeeEEECCCCEEEEEECCCCC
Confidence 98 789998874 999999 788887764 79999999875 78999999999999999997 89
Q ss_pred ccccccccccCEE
Q 003171 490 LLGGWVAHSSPVI 502 (842)
Q Consensus 490 ~i~~l~gH~~~V~ 502 (842)
+++++.+|.+.|.
T Consensus 323 ~~~~l~gH~~~v~ 335 (393)
T d1sq9a_ 323 RITTLNMHCDDIE 335 (393)
T ss_dssp EEEEEECCGGGCS
T ss_pred EEEEECCcCCccc
Confidence 9999999998875
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.92 E-value=1.4e-23 Score=220.87 Aligned_cols=277 Identities=10% Similarity=0.028 Sum_probs=177.8
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCCC--EEEeeCCCcEEEEe
Q 003171 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD--LWSGSEGGGIKIWP 268 (842)
Q Consensus 191 ~~~V~~la~dpdg~~LaSGs~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~--L~SgS~DgtIrvWd 268 (842)
...|.+|+|+|++++|+|||.||+||+||+.++. .........+|.++|++|+|+|++. |+||+.|++|++|+
T Consensus 11 ~d~I~~l~fsp~~~~L~s~s~Dg~v~iwd~~~~~-----~~~~~~~~~~h~~~V~~v~f~~~~~~~l~sg~~d~~v~~w~ 85 (342)
T d1yfqa_ 11 KDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQA-----KNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVD 85 (342)
T ss_dssp SSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTT-----TEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEEC
T ss_pred CCCEEEEEEeCCCCEEEEEECCCeEEEEEccCCC-----cceEEEEecCCCCCEEEEEEeCCCCCEEEEcccccceeeee
Confidence 6789999999999999999999999999987651 1122344458999999999999753 78999999999999
Q ss_pred CCCccceeecCCCceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcCCCCEEE-EeCCCcEEEEEccCCcEEEE
Q 003171 269 WEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVW-SAGFLSFALWDARTRELLKV 347 (842)
Q Consensus 269 ~~t~~~~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~-s~s~~tI~lWD~~tg~~l~~ 347 (842)
+............. ..........++...++ .+.++++++||++++.....
T Consensus 86 ~~~~~~~~~~~~~~----------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~ 137 (342)
T d1yfqa_ 86 LIGSPSFQALTNNE----------------------------ANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVI 137 (342)
T ss_dssp SSSSSSEEECBSCC----------------------------CCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTTBCE
T ss_pred cccccccccccccc----------------------------cccccccccccccccccccccccccceeecccccccee
Confidence 97644322221110 00111122222333444 44468999999976543222
Q ss_pred eecCCceEeeeecccCCCcccccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEeec--Cc-------cccC
Q 003171 348 FNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAK--GG-------FGDD 418 (842)
Q Consensus 348 l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~--g~-------~~~~ 418 (842)
+..+... .. . ........+.......+.+..++..+++.. +. ....
T Consensus 138 ~~~~~~~------~~---~----------------~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~ 192 (342)
T d1yfqa_ 138 AVKNLNS------NN---T----------------KVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDNGTIEESGL 192 (342)
T ss_dssp EEEESCS------SS---S----------------SSCCCEEEEEECSSEEEEEESTTEEEEEESSCCTTCCCEEEECSC
T ss_pred eeccccc------cc---c----------------cceeeeeeeeccCCceeeecCCCcEEEEecccCcccceeeeeccc
Confidence 2110000 00 0 000001112222334456666665555531 10 0112
Q ss_pred CCceEEEEE-CCCCc-EEEEeCCCeEEEEcCCC-Ce------e---------eeeecCCccEEEEEe--cCCEEEEEecC
Q 003171 419 NRRTEALTT-SIDGM-IWTGGANGLLLQWDPNG-NR------L---------QDFQYLPFAVQCLCT--FGSQIWVGYMN 478 (842)
Q Consensus 419 ~~~v~al~~-s~dg~-l~Sgs~DgtIrlWD~~g-~~------l---------~~l~~H~~~V~sls~--dG~~LasGs~D 478 (842)
...+.+... +.++. +++++.||.+.+|+... .. . ....+|...|+++++ ++++|++|+.|
T Consensus 193 ~~~~~~~~~~~~~~~~~~~~s~dg~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~lasg~~D 272 (342)
T d1yfqa_ 193 KYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSD 272 (342)
T ss_dssp SSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETT
T ss_pred ccceeeeEeecCCCCEEEeecCCCeEEEEEecCCcceeeccccceeeeeeeccCCCcccccceeEEecCCccEEEEECCC
Confidence 223444443 44444 78999999999998732 11 0 112357778988865 68899999999
Q ss_pred cEEEEEeCC-Cccccccc-ccccCEEEEEeCCCEEEEEcCCCCeeeccc
Q 003171 479 GIVQVLDLE-GNLLGGWV-AHSSPVIKMAVGAGYIFTLANHGGIRGWNV 525 (842)
Q Consensus 479 gtIrlWD~~-g~~i~~l~-gH~~~V~sla~dg~~l~S~S~DgtIrvWd~ 525 (842)
|+|+|||++ ++.+.++. .|...|.+++++++.+++++.|+++++|..
T Consensus 273 g~v~vWD~~~~~~l~~~~~~~~~~~~~~s~~~~~l~~a~sdd~~~~~~~ 321 (342)
T d1yfqa_ 273 GIISCWNLQTRKKIKNFAKFNEDSVVKIACSDNILCLATSDDTFKTNAA 321 (342)
T ss_dssp SCEEEEETTTTEEEEECCCCSSSEEEEEEECSSEEEEEEECTHHHHCSS
T ss_pred CEEEEEECCCCcEEEEecCCCCCEEEEEEeCCCEEEEEEcCCcEEEeee
Confidence 999999997 66777775 567778999999999999999999999974
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=99.91 E-value=3.1e-23 Score=218.30 Aligned_cols=242 Identities=12% Similarity=0.096 Sum_probs=168.5
Q ss_pred ceeEEecccCCcEEEEEEecCCC-EEEeeCCCcEEEEeCCCccceeecCCCceeeeEEEEeeceeecccceeccceeeee
Q 003171 232 GEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSIL 310 (842)
Q Consensus 232 ~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~~t~~~~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~ 310 (842)
...+.++||+++|++|+|+|||+ |+|||.||+||+||+++++....+.. +|
T Consensus 3 ~~~~~~~GH~~~V~~l~~s~dg~~l~s~s~Dg~v~vWd~~~~~~~~~~~~------------------~h---------- 54 (299)
T d1nr0a2 3 SIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPD------------------VH---------- 54 (299)
T ss_dssp EEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSC------------------SC----------
T ss_pred ccceEcCCCCCCcEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcC------------------CC----------
Confidence 34567899999999999999998 78999999999999977543322211 11
Q ss_pred cCCEEEEEEcCCCCEEEEeCCCcEEEEEccCCcEEEEeecCCceEeeeecccCCCcccccceEEEEEecCCCCccceeee
Q 003171 311 TSDIKNLLSDHSRAKVWSAGFLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFG 390 (842)
Q Consensus 311 s~~v~~las~~~~~~v~s~s~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~ 390 (842)
...+.++++.+++..+.++.++++++|+....... . ...... .. ......+.
T Consensus 55 ~~~v~~v~~~~~g~~~~~~~d~~v~~~~~~~~~~~-~---~~~~~~----------------------~~--~~~~~~~~ 106 (299)
T d1nr0a2 55 ATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVD-S---SKAVAN----------------------KL--SSQPLGLA 106 (299)
T ss_dssp SSCEEEEEECTTSCEEEEETTTEEEEECSSSSSSC-T---TSCCEE----------------------EC--SSCEEEEE
T ss_pred CCcEEEEEeeccceeecccceeeEEEeccCCcccc-c---cccccc----------------------cc--cccccccc
Confidence 34577888888887777778899999998653320 0 000000 00 00011223
Q ss_pred EeecCcceEEecCCcEEEEeecCcc--ccCCCceEEEEECCCCc-EEEEeCCCeEEEEcCC-CCeee-eeecCCccEEEE
Q 003171 391 FFQRSRNAIMGAADAVRRVAAKGGF--GDDNRRTEALTTSIDGM-IWTGGANGLLLQWDPN-GNRLQ-DFQYLPFAVQCL 465 (842)
Q Consensus 391 ~~~~~~~~~~g~~~~v~~v~~~g~~--~~~~~~v~al~~s~dg~-l~Sgs~DgtIrlWD~~-g~~l~-~l~~H~~~V~sl 465 (842)
+.+++..+..+..+.+..+.. +.. ......+.+++++|++. +++|+.||.|++||++ +++.. ....|..+|+++
T Consensus 107 ~s~~g~~~~~~~~~~i~~~~~-~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~ 185 (299)
T d1nr0a2 107 VSADGDIAVAACYKHIAIYSH-GKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSV 185 (299)
T ss_dssp ECTTSSCEEEEESSEEEEEET-TEEEEEECSSCEEEEEECTTSCEEEEEETTSEEEEEEEETTEEEEEEEEECSSCEEEE
T ss_pred ccccccccccccccccccccc-cccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 333333334444333333321 111 12334567889999987 7899999999999994 54433 345789999998
Q ss_pred Ee--cCCEEEEEecCcEEEEEeCC-Cc---ccccccccccCEEEEE--eCCCEEEEEcCCCCeeeccccCCCC
Q 003171 466 CT--FGSQIWVGYMNGIVQVLDLE-GN---LLGGWVAHSSPVIKMA--VGAGYIFTLANHGGIRGWNVTSPGP 530 (842)
Q Consensus 466 s~--dG~~LasGs~DgtIrlWD~~-g~---~i~~l~gH~~~V~sla--~dg~~l~S~S~DgtIrvWd~~~~~~ 530 (842)
++ ++++|++|+.|+.|++||+. +. ....+.+|.+.|.+++ ++++++++++.|++|++||+..+..
T Consensus 186 ~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~sgs~dg~i~iwd~~~~~~ 258 (299)
T d1nr0a2 186 AFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSD 258 (299)
T ss_dssp EECTTSSEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCTTS
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccceEEEcCCCEEEEEECCCCCc
Confidence 65 68899999999999999986 43 3567889999999998 4788999999999999999876543
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.90 E-value=1.1e-22 Score=224.60 Aligned_cols=269 Identities=14% Similarity=0.133 Sum_probs=166.6
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEe----cCC---C-EEEeeCCC
Q 003171 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCIS----SYG---D-LWSGSEGG 262 (842)
Q Consensus 191 ~~~V~~la~dpdg~~LaSGs~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs----~dG---~-L~SgS~Dg 262 (842)
.+.|+|+++++ ++|+|||.|++||+||..+.. ...+.........|...+..+... .++ . +++++.||
T Consensus 14 ~~~I~~v~~~~--~~l~S~S~D~~iriWd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~dg 89 (393)
T d1sq9a_ 14 DADIFSVSACN--SFTVSCSGDGYLKVWDNKLLD--NENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFSG 89 (393)
T ss_dssp SSCEEEEEECS--SEEEEEETTSEEEEEESBCCT--TCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEETTS
T ss_pred cCccEEEEEeC--CEEEEEECCCeEEEEECCCCC--CCcccceeEeeeeccCCceEeeeEeeeccCCCCCcEEEEEeCCC
Confidence 78999999874 799999999999999977642 112223344445666655444322 122 2 56999999
Q ss_pred cEEEEeCCCccceeecCCCceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcCC-----CCEEEE-eCCCcEEE
Q 003171 263 GIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHS-----RAKVWS-AGFLSFAL 336 (842)
Q Consensus 263 tIrvWd~~t~~~~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~-----~~~v~s-~s~~tI~l 336 (842)
+|++|++...........+ . ... +.... .......+..... +..+.+ +.++++++
T Consensus 90 ~v~~w~~~~~~~~~~~~~~--~-------~~~--~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~v 150 (393)
T d1sq9a_ 90 DLLFYRITREDETKKVIFE--K-------LDL--LDSDM--------KKHSFWALKWGASNDRLLSHRLVATDVKGTTYI 150 (393)
T ss_dssp CEEEEEEEECTTTCCEEEE--E-------ECC--SCTTG--------GGSCEEEEEEECCC----CEEEEEEETTSCEEE
T ss_pred cEEEEEccCCCceeeeecc--c-------cce--eeecc--------CCCceEEEEEecCCCcccccEEEEEcCCCcEEE
Confidence 9999998543221111000 0 000 00000 0112222222221 223333 44789999
Q ss_pred EEccCCcEEEEeecCCceEeeeecccCCCcccccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEeecCccc
Q 003171 337 WDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFG 416 (842)
Q Consensus 337 WD~~tg~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~ 416 (842)
||+...... .. ...... .. ..... + ......
T Consensus 151 w~~~~~~~~-------~~----~~~~~~----~~-----------------~~~~~--------~---------~~~~~~ 181 (393)
T d1sq9a_ 151 WKFHPFADE-------SN----SLTLNW----SP-----------------TLELQ--------G---------TVESPM 181 (393)
T ss_dssp EEEESSSSH-------HH----HTTTCC----CC-----------------EEEEE--------E---------EECCSS
T ss_pred EEeecCCcc-------cc----eeeeee----cc-----------------ceecc--------c---------ceeccc
Confidence 997542210 00 000000 00 00000 0 000112
Q ss_pred cCCCceEEEEECCCCcEEEEeCCCeEEEEcC-CCCeeee------eecCCccEEEEE--ecCCEEEEEecCc---EEEEE
Q 003171 417 DDNRRTEALTTSIDGMIWTGGANGLLLQWDP-NGNRLQD------FQYLPFAVQCLC--TFGSQIWVGYMNG---IVQVL 484 (842)
Q Consensus 417 ~~~~~v~al~~s~dg~l~Sgs~DgtIrlWD~-~g~~l~~------l~~H~~~V~sls--~dG~~LasGs~Dg---tIrlW 484 (842)
.+...+.+++++|||.+++|+.||+|++||+ +++++.. +.+|..+|++++ ++|++|++|+.|+ .|+||
T Consensus 182 ~~~~~~~~v~~s~dg~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~l~sgs~D~t~~~i~lw 261 (393)
T d1sq9a_ 182 TPSQFATSVDISERGLIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLY 261 (393)
T ss_dssp SSCCCCCEEEECTTSEEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEE
T ss_pred CCCCcEEEEEECCCCEEEEEeCCCcEEEEeecccccccccccccccccccceEEEcccccccceeeeecCCCCcceeeec
Confidence 2344567899999999999999999999999 6766544 457999999986 4899999999886 59999
Q ss_pred eCC-Ccccccc-------------cccccCEEEEEe--CCCEEEEEcCCCCeeeccccCCCCC
Q 003171 485 DLE-GNLLGGW-------------VAHSSPVIKMAV--GAGYIFTLANHGGIRGWNVTSPGPL 531 (842)
Q Consensus 485 D~~-g~~i~~l-------------~gH~~~V~sla~--dg~~l~S~S~DgtIrvWd~~~~~~~ 531 (842)
|++ ++++.++ .||.+.|++|++ |+++|+|+|.|++||+||+.+..++
T Consensus 262 d~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~~l~S~s~D~~v~vWd~~~g~~~ 324 (393)
T d1sq9a_ 262 ETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERI 324 (393)
T ss_dssp ETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEE
T ss_pred ccccceeeeeeccccccccceeeeecccCceeeeccCCCCCeeEEECCCCEEEEEECCCCCEE
Confidence 987 6555544 489999999985 7899999999999999998875443
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.90 E-value=1.3e-22 Score=218.45 Aligned_cols=246 Identities=15% Similarity=0.150 Sum_probs=178.7
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCc-EEEEECCCCccCCCCCcceeEEeccc-CCcEEEEEEecC--CC-EEEeeCCCcEE
Q 003171 191 VSSVMCMVGDEASGVVWSGHRDGR-IMCWKMNARLLDSDDGFGEVLSWQAH-RGPVLSLCISSY--GD-LWSGSEGGGIK 265 (842)
Q Consensus 191 ~~~V~~la~dpdg~~LaSGs~DGt-IrlWdl~~g~~~~~~~~~~~~~l~gH-~~~V~slafs~d--G~-L~SgS~DgtIr 265 (842)
.+.+.+++|+|+|+.|+.++.+.. |+.|+.... .......+.|| ..+|++|+|+|+ |+ |+||+.||+||
T Consensus 17 ~~~~t~l~~~~~~~~la~~~~~~~~i~~~~~~~~------~~~~~~~~~gh~~~~v~~v~fsP~~~g~~lasgs~Dg~i~ 90 (325)
T d1pgua1 17 RNFTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDS------KVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVI 90 (325)
T ss_dssp TTCCCCCEEETTTTEEEEEETTEEEEEECCSSCC------SSCSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEE
T ss_pred CCCeEEEEECCCCCEEEEEeCCCEEEEEEeCCCC------CccceEEEeCCCCCCEEEEEEeeCCCCCEEEEEeCCCCEE
Confidence 345778999999999999876653 667765442 23556778888 578999999984 55 68999999999
Q ss_pred EEeCCCccceeecCCCceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcCCCCEEEEeC---CCcEEEEEccCC
Q 003171 266 IWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG---FLSFALWDARTR 342 (842)
Q Consensus 266 vWd~~t~~~~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s---~~tI~lWD~~tg 342 (842)
|||+........... ... .........+..++.++++..+++++ +..+++|+..++
T Consensus 91 iWd~~~~~~~~~~~~---~~~------------------~~~~~~~~~v~~v~~s~~~~~l~~~~~~~~~~~~~~~~~~~ 149 (325)
T d1pgua1 91 VWGWTFDKESNSVEV---NVK------------------SEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSG 149 (325)
T ss_dssp EEEEEEEGGGTEEEE---EEE------------------EEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETTTC
T ss_pred EeeecCCcceeeeec---ccc------------------cccccccCcEEEEEECCCCCccceeeccccceEEEEeeccc
Confidence 999865332111100 000 00011245678888888888777654 347889998888
Q ss_pred cEEEEeecCCceEeeeecccCCCcccccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEeecCccccCCCce
Q 003171 343 ELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRT 422 (842)
Q Consensus 343 ~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v 422 (842)
+++..+.. |...|
T Consensus 150 ~~~~~~~~-------------------------------------------------------------------h~~~v 162 (325)
T d1pgua1 150 NSLGEVSG-------------------------------------------------------------------HSQRI 162 (325)
T ss_dssp CEEEECCS-------------------------------------------------------------------CSSCE
T ss_pred ccceeeee-------------------------------------------------------------------ccccc
Confidence 77555432 23345
Q ss_pred EEEEECCCCc--EEEEeCCCeEEEEcC-CCCeeee---eecCCccEEEEEe--c-CCEEEEEecCcEEEEEeCC-Ccccc
Q 003171 423 EALTTSIDGM--IWTGGANGLLLQWDP-NGNRLQD---FQYLPFAVQCLCT--F-GSQIWVGYMNGIVQVLDLE-GNLLG 492 (842)
Q Consensus 423 ~al~~s~dg~--l~Sgs~DgtIrlWD~-~g~~l~~---l~~H~~~V~sls~--d-G~~LasGs~DgtIrlWD~~-g~~i~ 492 (842)
.+++++|++. +++++.|+.|++||. .++.... +..|...|.++++ + +.+|++|+.|++|++||++ ++++.
T Consensus 163 ~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~v~~v~~~pd~~~~l~s~~~d~~i~iwd~~~~~~~~ 242 (325)
T d1pgua1 163 NACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLK 242 (325)
T ss_dssp EEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEE
T ss_pred ccccccccccceEEEeecccccccccccccccceecccccCCCCccEEeeeccccceeccccccccceeeeeeccccccc
Confidence 5677777764 678999999999999 5654444 4467888999875 4 5799999999999999987 78889
Q ss_pred cccccccCE----EEEE-eCCCEEEEEcCCCCeeeccccCCCC
Q 003171 493 GWVAHSSPV----IKMA-VGAGYIFTLANHGGIRGWNVTSPGP 530 (842)
Q Consensus 493 ~l~gH~~~V----~sla-~dg~~l~S~S~DgtIrvWd~~~~~~ 530 (842)
++.+|...| ++++ +++++++++|.|++|++||+.+..+
T Consensus 243 ~l~~~~~~v~~~~~s~~~~dg~~l~s~s~D~~i~iwd~~~~~~ 285 (325)
T d1pgua1 243 YIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKC 285 (325)
T ss_dssp ECCBTTBCCCSCEEEEEESSSSEEEEEETTSEEEEEETTTTEE
T ss_pred cccccccccccceeeeeccCCCEEEEEeCCCeEEEEECCCCCE
Confidence 999888765 4555 5889999999999999999876433
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.87 E-value=5.9e-21 Score=200.36 Aligned_cols=290 Identities=10% Similarity=0.048 Sum_probs=176.8
Q ss_pred eeEEEEec--CCEEEE-ecCCCEEEEeCCCCccccccccccccCCCCCCCCCCeeee-eecCCCeEEEEEcCCC-CEEEE
Q 003171 134 FLRTIVCT--EEQLWA-GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKES-VKGVSSVMCMVGDEAS-GVVWS 208 (842)
Q Consensus 134 ~~~~l~~~--~~~l~~-~~D~~vrvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~V~~la~dpdg-~~LaS 208 (842)
.|.+|+.+ ++.|.+ +.|++|||||+.+..... .+... .| .++|.|++|+|++ .+|+|
T Consensus 13 ~I~~l~fsp~~~~L~s~s~Dg~v~iwd~~~~~~~~-----------------~~~~~~~h-~~~V~~v~f~~~~~~~l~s 74 (342)
T d1yfqa_ 13 YISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNV-----------------DLLQSLRY-KHPLLCCNFIDNTDLQIYV 74 (342)
T ss_dssp CEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEE-----------------EEEEEEEC-SSCEEEEEEEESSSEEEEE
T ss_pred CEEEEEEeCCCCEEEEEECCCeEEEEEccCCCcce-----------------EEEEecCC-CCCEEEEEEeCCCCCEEEE
Confidence 46777765 445655 569999999986532211 11111 23 7899999999864 68999
Q ss_pred EeCCCcEEEEECCCCccCCCCCcceeEEeccc-CCcEEEEEEecCCC-EEEeeCCCcEEEEeCCCccceeecCCCceeee
Q 003171 209 GHRDGRIMCWKMNARLLDSDDGFGEVLSWQAH-RGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEKALSLKPEERHTA 286 (842)
Q Consensus 209 Gs~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH-~~~V~slafs~dG~-L~SgS~DgtIrvWd~~t~~~~l~~~~~~~~~~ 286 (842)
|+.||+|++|++..+ ........| ........+.+++. +++++.|+++++||+.+..........
T Consensus 75 g~~d~~v~~w~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~~~~~----- 141 (342)
T d1yfqa_ 75 GTVQGEILKVDLIGS--------PSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKN----- 141 (342)
T ss_dssp EETTSCEEEECSSSS--------SSEEECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTTBCEEEEE-----
T ss_pred cccccceeeeecccc--------cccccccccccccccccccccccccccccccccccceeeccccccceeeecc-----
Confidence 999999999999886 334444444 33444445555554 789999999999998653221110000
Q ss_pred EEEEeeceeecccceeccceeeeecCCEEEEEEcCCCCEEE-EeCCCcEEEEEccCCcEEEEeec---CCceEeeeeccc
Q 003171 287 ALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVW-SAGFLSFALWDARTRELLKVFNI---DGQIENRVDMSL 362 (842)
Q Consensus 287 ~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~-s~s~~tI~lWD~~tg~~l~~l~~---~~~~~~~~~~s~ 362 (842)
...+.. ............+..++ .+.+++|++||+.+++....+.. ...........
T Consensus 142 ----------~~~~~~--------~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 202 (342)
T d1yfqa_ 142 ----------LNSNNT--------KVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALL- 202 (342)
T ss_dssp ----------SCSSSS--------SSCCCEEEEEECSSEEEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEEC-
T ss_pred ----------cccccc--------cceeeeeeeeccCCceeeecCCCcEEEEecccCcccceeeeecccccceeeeEee-
Confidence 000000 00111222223334444 44478999999987654222111 00000000000
Q ss_pred CCCcccccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEee---------------------cCccccCCCc
Q 003171 363 LPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAA---------------------KGGFGDDNRR 421 (842)
Q Consensus 363 ~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~---------------------~g~~~~~~~~ 421 (842)
.........+..++...++. ......+...
T Consensus 203 -----------------------------~~~~~~~~~~s~dg~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (342)
T d1yfqa_ 203 -----------------------------PKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYP 253 (342)
T ss_dssp -----------------------------SGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCC
T ss_pred -----------------------------cCCCCEEEeecCCCeEEEEEecCCcceeeccccceeeeeeeccCCCccccc
Confidence 00011122223333222221 1112345667
Q ss_pred eEEEEECCCCc-EEEEeCCCeEEEEcC-CCCeeeeee-cCCccEEEEEecCCEEEEEecCcEEEEEeCCCcccccccccc
Q 003171 422 TEALTTSIDGM-IWTGGANGLLLQWDP-NGNRLQDFQ-YLPFAVQCLCTFGSQIWVGYMNGIVQVLDLEGNLLGGWVAHS 498 (842)
Q Consensus 422 v~al~~s~dg~-l~Sgs~DgtIrlWD~-~g~~l~~l~-~H~~~V~sls~dG~~LasGs~DgtIrlWD~~g~~i~~l~gH~ 498 (842)
+.+++|+|++. |+||+.||+|++||+ +++++.++. .|...+.+++++|++|++|+.|+++++|..- ..++..|.
T Consensus 254 v~~l~~sp~~~~lasg~~Dg~v~vWD~~~~~~l~~~~~~~~~~~~~~s~~~~~l~~a~sdd~~~~~~~~---~~~~~~~~ 330 (342)
T d1yfqa_ 254 VNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIACSDNILCLATSDDTFKTNAAI---DQTIELNA 330 (342)
T ss_dssp EEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSSEEEEEEECSSEEEEEEECTHHHHCSSS---CTTSCCCC
T ss_pred ceeEEecCCccEEEEECCCCEEEEEECCCCcEEEEecCCCCCEEEEEEeCCCEEEEEEcCCcEEEeeee---CCCccCCC
Confidence 88999999987 899999999999999 788888885 4677889999999999999999999988753 34566788
Q ss_pred cCEEEEE
Q 003171 499 SPVIKMA 505 (842)
Q Consensus 499 ~~V~sla 505 (842)
..|+.+.
T Consensus 331 ~~i~~~~ 337 (342)
T d1yfqa_ 331 SSIYIIF 337 (342)
T ss_dssp CEEEEEE
T ss_pred CeEEEEc
Confidence 8888664
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.87 E-value=4.1e-20 Score=190.04 Aligned_cols=230 Identities=16% Similarity=0.195 Sum_probs=164.1
Q ss_pred cceeEEecccCCcEEEEEEecCCC-EEEeeCCCcEEEEeCCCccceeecCCCceeeeEEEEeeceeecccceeccceeee
Q 003171 231 FGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSI 309 (842)
Q Consensus 231 ~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~~t~~~~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~ 309 (842)
++.+....+|...|+|+.| ||+ |+|||.||+|||||+.+++...++. +|
T Consensus 5 ~~~i~~~~~~~~~V~c~~~--d~~~l~sgs~Dg~i~vWd~~~~~~~~~l~-------------------~H--------- 54 (293)
T d1p22a2 5 LQRIHCRSETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKRILT-------------------GH--------- 54 (293)
T ss_dssp CCCEECCCSSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCCEEEEEC-------------------CC---------
T ss_pred EEEEeccCCCCCCEEEEEE--cCCEEEEEeCCCeEEEEECCCCcEEEEEe-------------------cC---------
Confidence 3556667788999998765 676 8999999999999998765433222 22
Q ss_pred ecCCEEEEEEcCCCCEEEEeC-CCcEEEEEccCCcEEEEeecCCceEeeeecccCCCcccccceEEEEEecCCCCcccee
Q 003171 310 LTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSS 388 (842)
Q Consensus 310 ~s~~v~~las~~~~~~v~s~s-~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s 388 (842)
...|.++.. ++..|++++ |++|++|++.++..................
T Consensus 55 -~~~V~~v~~--~~~~l~s~s~D~~i~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------------- 103 (293)
T d1p22a2 55 -TGSVLCLQY--DERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRF---------------------------- 103 (293)
T ss_dssp -SSCEEEEEC--CSSEEEEEETTSCEEEEESSSCCEEEEECCCCSCEEEEEC----------------------------
T ss_pred -CCCEeeeec--ccceeecccccccccccccccccccccccccccccccccc----------------------------
Confidence 345666654 456777766 679999999998876655432221100000
Q ss_pred eeEeecCcceEEecCCcEEEEeec---------CccccCCCceEEEEECCCCcEEEEeCCCeEEEEcC-CCCeeeeeecC
Q 003171 389 FGFFQRSRNAIMGAADAVRRVAAK---------GGFGDDNRRTEALTTSIDGMIWTGGANGLLLQWDP-NGNRLQDFQYL 458 (842)
Q Consensus 389 ~~~~~~~~~~~~g~~~~v~~v~~~---------g~~~~~~~~v~al~~s~dg~l~Sgs~DgtIrlWD~-~g~~l~~l~~H 458 (842)
.....+.+..++..+++.. ..+..+...+..+.+.+ ..+++++.|++|++||+ +++++..+.+|
T Consensus 104 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~s~d~~i~~~d~~~~~~~~~~~~~ 177 (293)
T d1p22a2 104 -----NNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDD-KYIVSASGDRTIKVWNTSTCEFVRTLNGH 177 (293)
T ss_dssp -----CTTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEET-TEEEEEETTSEEEEEETTTCCEEEEEECC
T ss_pred -----cccceeecccccceeEeeccccccccccccccccccccccceecc-cccccccCCCceeeecCCCCcEEEEEccc
Confidence 0001112222222222110 01233455555555543 34788999999999999 78999999999
Q ss_pred CccEEEEEecCCEEEEEecCcEEEEEeCC-CcccccccccccCEEEEEeCCCEEEEEcCCCCeeeccccC
Q 003171 459 PFAVQCLCTFGSQIWVGYMNGIVQVLDLE-GNLLGGWVAHSSPVIKMAVGAGYIFTLANHGGIRGWNVTS 527 (842)
Q Consensus 459 ~~~V~sls~dG~~LasGs~DgtIrlWD~~-g~~i~~l~gH~~~V~sla~dg~~l~S~S~DgtIrvWd~~~ 527 (842)
...|..+.+++.++++|+.|++|++||++ ++.+..+.+|...|..+..++.++++++.||+|++||+..
T Consensus 178 ~~~v~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~l~sg~~dg~i~iwd~~~ 247 (293)
T d1p22a2 178 KRGIACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDNKRIVSGAYDGKIKVWDLVA 247 (293)
T ss_dssp SSCEEEEEEETTEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEECCSSEEEEEETTSCEEEEEHHH
T ss_pred ccccccccCCCCeEEEecCCCEEEEEecccceeeeeecccceeeeeccccceEEEEEcCCCEEEEEECCC
Confidence 99999999999999999999999999997 6788899999999999999999999999999999999753
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.85 E-value=2.4e-20 Score=199.67 Aligned_cols=315 Identities=7% Similarity=0.002 Sum_probs=187.1
Q ss_pred eeEEEEe-cCCEEEEecCCCEEEEeCCCCccccccccccccCCCCCCCCCCeeeeeecCCCeEEEEEcCCCCEEEEEeCC
Q 003171 134 FLRTIVC-TEEQLWAGGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGHRD 212 (842)
Q Consensus 134 ~~~~l~~-~~~~l~~~~D~~vrvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~V~~la~dpdg~~LaSGs~D 212 (842)
|...... +++.+..+.++.|+|||+++.... ...| ...|.+++|+|||+.|++++.|
T Consensus 6 ~~~~fSP~dG~~~a~~~~g~v~v~d~~~~~~~---------------------~~~~-~~~v~~~~~spDg~~l~~~~~~ 63 (360)
T d1k32a3 6 FAEDFSPLDGDLIAFVSRGQAFIQDVSGTYVL---------------------KVPE-PLRIRYVRRGGDTKVAFIHGTR 63 (360)
T ss_dssp GEEEEEECGGGCEEEEETTEEEEECTTSSBEE---------------------ECSC-CSCEEEEEECSSSEEEEEEEET
T ss_pred hcccccCCCCCEEEEEECCeEEEEECCCCcEE---------------------EccC-CCCEEEEEECCCCCEEEEEEcC
Confidence 5556665 666666678899999998753321 1123 6789999999999999887655
Q ss_pred C--cEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCCC-EEEeeCCCcEEEEeCCCccceeecCCCceeeeEEE
Q 003171 213 G--RIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALI 289 (842)
Q Consensus 213 G--tIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~~t~~~~l~~~~~~~~~~~l~ 289 (842)
. +|++||+.++ +...+.+|.+.|.+++|+|||+ |++++.|+.+++|++++......+..+
T Consensus 64 ~g~~v~v~d~~~~---------~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-------- 126 (360)
T d1k32a3 64 EGDFLGIYDYRTG---------KAEKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSR-------- 126 (360)
T ss_dssp TEEEEEEEETTTC---------CEEECCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECS--------
T ss_pred CCCEEEEEECCCC---------cEEEeeCCCceEEeeeecccccccceeccccccccccccccceeeeeecc--------
Confidence 4 7999999885 4667889999999999999998 789999999999999775432221111
Q ss_pred EeeceeecccceeccceeeeecCCEEEEEEcCCCCEEEEe-----------CCCcEEEEEccCCcEEEEeecCCceEeee
Q 003171 290 VERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSA-----------GFLSFALWDARTRELLKVFNIDGQIENRV 358 (842)
Q Consensus 290 ~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~-----------s~~tI~lWD~~tg~~l~~l~~~~~~~~~~ 358 (842)
...+..++.++++..++.+ .+..+++||+.+++.......... ...+
T Consensus 127 ---------------------~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~-~~~~ 184 (360)
T d1k32a3 127 ---------------------EAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAATTENSH-DYAP 184 (360)
T ss_dssp ---------------------SSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEEEECSCSSSB-EEEE
T ss_pred ---------------------cccccchhhccceeeeeeeccccccceeeccccceeeeccccCceeeecccccc-cccc
Confidence 1122334444455444322 123689999999887655433322 2223
Q ss_pred ecccCCCcccccceEEEEEecCCCCccceeeeEeecCcceEE-ecCCcEEEEeecCccccCCCceEEEEECCCCc-EEEE
Q 003171 359 DMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIM-GAADAVRRVAAKGGFGDDNRRTEALTTSIDGM-IWTG 436 (842)
Q Consensus 359 ~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~-g~~~~v~~v~~~g~~~~~~~~v~al~~s~dg~-l~Sg 436 (842)
.+++.....+ ..+.. . .+..++....... .....+..+. .+...+..+.+++++. ++++
T Consensus 185 ~~spdg~~l~-------~~s~~--~----~~~~~d~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~s~~~~~~~~~ 245 (360)
T d1k32a3 185 AFDADSKNLY-------YLSYR--S----LDPSPDRVVLNFSFEVVSKPFVIP------LIPGSPNPTKLVPRSMTSEAG 245 (360)
T ss_dssp EECTTSCEEE-------EEESC--C----CCCEECSSSSCEECCSCBEEEEEE------SSTTCCCGGGCCCGGGSCCCC
T ss_pred cccCCCCEEE-------EEeCC--C----ceEcccccccceeeccccceEEEe------cccCccccceECCCcCccccc
Confidence 3333221110 00000 0 0001110000000 0000011110 0111122233455554 3333
Q ss_pred eCCC-----eEEEEcCCCCeeeeeecCCccEEEEEe--cC---CEEEEEecCcEEEEEeCCCcccccccccccCEEEEE-
Q 003171 437 GANG-----LLLQWDPNGNRLQDFQYLPFAVQCLCT--FG---SQIWVGYMNGIVQVLDLEGNLLGGWVAHSSPVIKMA- 505 (842)
Q Consensus 437 s~Dg-----tIrlWD~~g~~l~~l~~H~~~V~sls~--dG---~~LasGs~DgtIrlWD~~g~~i~~l~gH~~~V~sla- 505 (842)
..+. .+..++..+.....+..+.+.+..+.. .+ .++++++.++.|++||++++.+. .|.+.|.+++
T Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~---~~~~~v~~~~~ 322 (360)
T d1k32a3 246 EYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKVT---EVKNNLTDLRL 322 (360)
T ss_dssp CCCCTTGGGGCEECSCCCBCEEEEEECSSEEEEEECCCCCSHHHHHHCCCCCEEEEEEETTTCCEE---EEEEEEEEEEE
T ss_pred ceeecccccceeecccCcCceeEeeecCCCceEEEEEecCCCeeEEEecCCCCEEEEEECCCCeEE---EecCCcCEEEE
Confidence 3221 244445543334455566666666543 23 37888889999999999854333 4555688776
Q ss_pred -eCCCEEEEEcCCCCeeeccccCCCCC
Q 003171 506 -VGAGYIFTLANHGGIRGWNVTSPGPL 531 (842)
Q Consensus 506 -~dg~~l~S~S~DgtIrvWd~~~~~~~ 531 (842)
+||++|++++.||+|++||+..+...
T Consensus 323 SpDG~~l~~~~~Dg~i~v~d~~~~~~~ 349 (360)
T d1k32a3 323 SADRKTVMVRKDDGKIYTFPLEKPEDE 349 (360)
T ss_dssp CTTSCEEEEEETTSCEEEEESSCTTSC
T ss_pred CCCCCEEEEEECCCeEEEEECCCCCcc
Confidence 59999999999999999999876553
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.80 E-value=2.7e-18 Score=179.15 Aligned_cols=248 Identities=8% Similarity=-0.023 Sum_probs=167.8
Q ss_pred eeEEEEecCCEEEE-ecCCCEEEEeCCCCccccccccccccCCCCCCCCCCeeeeeecCCCeEEEEEcCCCCEEEEEeCC
Q 003171 134 FLRTIVCTEEQLWA-GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGHRD 212 (842)
Q Consensus 134 ~~~~l~~~~~~l~~-~~D~~vrvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~V~~la~dpdg~~LaSGs~D 212 (842)
.+++|+.+. |++ +.|++|++||+.+.. ..| .+.|.|++++++ +.++|++.|
T Consensus 15 ~I~~l~~s~--l~sgs~Dg~v~~Wd~~~~~------------------------~~h-~~~V~~~~~~~~-~~~~s~s~D 66 (287)
T d1pgua2 15 GITALTVNP--LISGSYDGRIMEWSSSSMH------------------------QDH-SNLIVSLDNSKA-QEYSSISWD 66 (287)
T ss_dssp CEEEEETTT--TEEEETTSCEEETTTTEEE------------------------CCC-CSCEEEEECCST-TCCEEEETT
T ss_pred ceEEEEECc--EEEEeCCCeEEEEECCCCC------------------------CCC-CCCEEEEEecCC-CeEEEEeec
Confidence 456666544 554 679999999986521 123 678999999864 678999999
Q ss_pred CcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCCCEEEeeCCCcEEEEeCCCccceeecCCCceeeeEEEEee
Q 003171 213 GRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGDLWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVER 292 (842)
Q Consensus 213 GtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~L~SgS~DgtIrvWd~~t~~~~l~~~~~~~~~~~l~~~~ 292 (842)
+++|+|++... . +...+..+++++++.++..+.++.+.+|+..++.....+..
T Consensus 67 ~~v~~w~~~~~------------~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------ 119 (287)
T d1pgua2 67 DTLKVNGITKH------------E---FGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRL------------ 119 (287)
T ss_dssp TEEEETTEEEE------------E---CSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEEC------------
T ss_pred ccccccccccc------------c---cccceeeeeeccCCceEEEeecccceeeeccceeeeeeccc------------
Confidence 99999987542 1 13356788999999876666777889998866432211110
Q ss_pred ceeecccceeccceeeeecCCEEEEEEcCCCCEEEEeC-C-CcEEEEEccCCcEEEEeecCCceEeeeecccCCCccccc
Q 003171 293 SYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-F-LSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMED 370 (842)
Q Consensus 293 s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s-~-~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~~~~~ 370 (842)
.....++ .+.+..++.++ + +.+++|++.+.+....+....
T Consensus 120 ------------------~~~~~~~--~~~~~~~~v~~~~~~~v~~~~~~~~~~~~~~~~~~------------------ 161 (287)
T d1pgua2 120 ------------------NSPGSAV--SLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPL------------------ 161 (287)
T ss_dssp ------------------SSCEEEE--EECSSEEEEEETTTSCEEEEETTEEEEEEECSSCC------------------
T ss_pred ------------------cceeeee--eccCcceeeeccccceeeeeeccccceeeeeeecc------------------
Confidence 1112222 22344444443 3 479999987655433322100
Q ss_pred ceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEeec-------CccccCCCceEEEEECCCC-----------c
Q 003171 371 EFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAK-------GGFGDDNRRTEALTTSIDG-----------M 432 (842)
Q Consensus 371 ~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~-------g~~~~~~~~v~al~~s~dg-----------~ 432 (842)
......+.|.+++..+++|..++..+++.. ..+..|...|.+++++|++ .
T Consensus 162 ------------~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~ 229 (287)
T d1pgua2 162 ------------RAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDL 229 (287)
T ss_dssp ------------SSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEECCSCCCSSCEEEEEECCCC------CCSCCE
T ss_pred ------------CCceeEEEeccCccccccccccccccceeecccccccccccccccccceeeecccccccccccCCCCe
Confidence 111223556666666677777776666541 2345678889999988754 3
Q ss_pred EEEEeCCCeEEEEcC-C-CCeeeeeecCCccEEEEEe-cCCEEEEEecCcEEEEEeC
Q 003171 433 IWTGGANGLLLQWDP-N-GNRLQDFQYLPFAVQCLCT-FGSQIWVGYMNGIVQVLDL 486 (842)
Q Consensus 433 l~Sgs~DgtIrlWD~-~-g~~l~~l~~H~~~V~sls~-dG~~LasGs~DgtIrlWD~ 486 (842)
+++|+.|++|++||+ + +++++.+.+|...|+++++ ++.+|++++.|++|++||+
T Consensus 230 l~sgs~D~~i~iw~~~~~~~~~~~~~~h~~~V~~v~~~~~~~l~s~g~D~~v~iW~i 286 (287)
T d1pgua2 230 VATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPSTLVSSGADACIKRWNV 286 (287)
T ss_dssp EEEEETTSCEEEEESSCTTCCEEETTSSTTCEEEEEEEETTEEEEEETTSCEEEEEE
T ss_pred eEeecCCCeEEEEECCCCCeEEEEeCCCCCCeEEEEECCCCEEEEEECCCeEEEEEE
Confidence 889999999999998 5 5778888999999999965 3457999999999999985
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Probab=99.80 E-value=7.6e-19 Score=197.34 Aligned_cols=332 Identities=8% Similarity=-0.028 Sum_probs=199.7
Q ss_pred ecCCCEEEEeCCCCccccccccccccCCCCCCCCCCeeeeeecCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCC
Q 003171 148 GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDS 227 (842)
Q Consensus 148 ~~D~~vrvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~V~~la~dpdg~~LaSGs~DGtIrlWdl~~g~~~~ 227 (842)
+.|++|+|||.++...... +.....+..++|||||++|++++.||+|++||+.++..
T Consensus 39 ~d~g~v~v~D~~t~~v~~~---------------------~~~g~~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~-- 95 (432)
T d1qksa2 39 RDAGQIALIDGSTYEIKTV---------------------LDTGYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEP-- 95 (432)
T ss_dssp TTTTEEEEEETTTCCEEEE---------------------EECSSCEEEEEECTTSCEEEEEETTSEEEEEETTSSSC--
T ss_pred cCCCEEEEEECCCCcEEEE---------------------EeCCCCeeEEEECCCCCEEEEEcCCCCEEEEEeeCCCc--
Confidence 5689999999987654321 11133689999999999999999999999999988620
Q ss_pred CCCcceeEEecccCCcEEEEEEecCCC-E-EEeeCCCcEEEEeCCCccceeecCCCceeeeEEEEeeceeecccceeccc
Q 003171 228 DDGFGEVLSWQAHRGPVLSLCISSYGD-L-WSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNG 305 (842)
Q Consensus 228 ~~~~~~~~~l~gH~~~V~slafs~dG~-L-~SgS~DgtIrvWd~~t~~~~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~ 305 (842)
....++....+|.+.+.+++|||||+ | ++++.|++|+|||.++++......... .....
T Consensus 96 -~~~~~i~~~~~~~~~~~s~~~SpDG~~l~vs~~~~~~v~i~d~~t~~~~~~~~~~~------------------~~~~~ 156 (432)
T d1qksa2 96 -TTVAEIKIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRG------------------MTYDE 156 (432)
T ss_dssp -CEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCE------------------ECTTT
T ss_pred -eEEEEEecCCCCCCeEEecccCCCCCEEEEEcCCCCeEEEEeCccccceeeeccCC------------------ccccc
Confidence 11112334467888999999999998 5 689999999999998765432221110 01111
Q ss_pred eeeeecCCEEEEEEcCCCCEE-EEeC-CCcEEEEEccCCcEEEEeec-CCceEeeeecccCCCccc---ccceEEEEEec
Q 003171 306 FSSILTSDIKNLLSDHSRAKV-WSAG-FLSFALWDARTRELLKVFNI-DGQIENRVDMSLLPDFAM---EDEFKTKIVTS 379 (842)
Q Consensus 306 ~~~~~s~~v~~las~~~~~~v-~s~s-~~tI~lWD~~tg~~l~~l~~-~~~~~~~~~~s~~~~~~~---~~~~~~~~~s~ 379 (842)
....+.+....+++++++..+ ++.. .+.|.+||..+++.+++... .+.....+.+++.....+ .....+.++..
T Consensus 157 ~~~~~~~~~~~v~~s~dg~~~~vs~~~~~~i~~~d~~~~~~~~~~~i~~g~~~~~~~~spdg~~~~va~~~~~~v~v~d~ 236 (432)
T d1qksa2 157 QEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDT 236 (432)
T ss_dssp CCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEET
T ss_pred eeccCCCceeEEEECCCCCEEEEEEccCCeEEEEEccCCCcceEEEEcccCccccceECCCCCEEEEeccccceEEEeec
Confidence 122234566677777777654 4444 36899999998876554332 222223445555433211 00111111111
Q ss_pred CCC------------CccceeeeEee--cCcceEEec-CCcEEEEee--cCccccCCCceEEEEECCCCc-EEEEeCCCe
Q 003171 380 SKK------------DKAQSSFGFFQ--RSRNAIMGA-ADAVRRVAA--KGGFGDDNRRTEALTTSIDGM-IWTGGANGL 441 (842)
Q Consensus 380 ~~~------------~~~~~s~~~~~--~~~~~~~g~-~~~v~~v~~--~g~~~~~~~~v~al~~s~dg~-l~Sgs~Dgt 441 (842)
... ........+.. .+......+ .++...++. ......+..++...++++++. +++++.+++
T Consensus 237 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~lg~~~v~~~~~~~~~~~~~~~~v~~~~~~~~g~~~~~~s~p~~ 316 (432)
T d1qksa2 237 KEGKLVAIEDTGGQTPHPGRGANFVHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGGGSLFIKTHPNS 316 (432)
T ss_dssp TTTEEEEEEECSSSSBCCTTCEEEEETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTC
T ss_pred ccceEEEEeccCccccccCcccceecCCCCceecccccCCceEEecccccccccccccEEEEEEEcCCCCeEEEEecCCc
Confidence 100 00000000110 011111111 122222222 123334566888899999876 889999999
Q ss_pred EEEEcCCCCeeeeeecCCccEEEEE-ecCCEEEEEecCcEEEEEeCCCcccccccccccCEEEEE--eCCCEEEEEc---
Q 003171 442 LLQWDPNGNRLQDFQYLPFAVQCLC-TFGSQIWVGYMNGIVQVLDLEGNLLGGWVAHSSPVIKMA--VGAGYIFTLA--- 515 (842)
Q Consensus 442 IrlWD~~g~~l~~l~~H~~~V~sls-~dG~~LasGs~DgtIrlWD~~g~~i~~l~gH~~~V~sla--~dg~~l~S~S--- 515 (842)
.++|+... +..|.....+++ +||+.|++|+.|+++++||+.. ...+..|...|.+++ +||++++...
T Consensus 317 ~~lw~~~~-----~~~~~~~~~sv~vpDg~~la~~s~d~~~k~w~~~~--~~~l~~~~~~v~~~~fS~DG~~v~~S~~~~ 389 (432)
T d1qksa2 317 QYLYVDAT-----LNPEAEISGSVAVFDIKAMTGDGSDPEFKTLPIAE--WAGITEGQPRVVQGEFNKDGTEVWFSVWNG 389 (432)
T ss_dssp SEEEEECT-----TCSSHHHHTCEEEEEGGGCCCSSSCCCEEEECHHH--HHTCCSSCCEEEEEEECTTSSEEEEEEECC
T ss_pred cceeeccc-----CCCCCCeeeEEEEEechhhcccccCCceEeccccc--ccccCCCCCcEEEeEECCCCCEEEEEEecC
Confidence 99998632 122332222332 7999999999999999999741 133446778898887 4888875332
Q ss_pred --CCCCeeeccccCC
Q 003171 516 --NHGGIRGWNVTSP 528 (842)
Q Consensus 516 --~DgtIrvWd~~~~ 528 (842)
.|+.|+|||..+.
T Consensus 390 ~~~~g~i~i~D~~T~ 404 (432)
T d1qksa2 390 KDQESALVVVDDKTL 404 (432)
T ss_dssp TTSCCEEEEEETTTT
T ss_pred CCCCCcEEEEECCCc
Confidence 4678999997664
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.80 E-value=4.4e-18 Score=189.82 Aligned_cols=320 Identities=9% Similarity=0.004 Sum_probs=176.8
Q ss_pred ecCCCEEEEeCCCCccccccccccccCCCCCCCCCCeeeeeecCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCC
Q 003171 148 GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDS 227 (842)
Q Consensus 148 ~~D~~vrvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~V~~la~dpdg~~LaSGs~DGtIrlWdl~~g~~~~ 227 (842)
+.|+.|+|||+++...... +.+...+..++|+|||++|++++.||+|++||+.++.+
T Consensus 39 ~~dg~v~vwD~~t~~~~~~---------------------l~~g~~~~~vafSPDGk~l~~~~~d~~v~vwd~~t~~~-- 95 (426)
T d1hzua2 39 RDAGQIALVDGDSKKIVKV---------------------IDTGYAVHISRMSASGRYLLVIGRDARIDMIDLWAKEP-- 95 (426)
T ss_dssp TTTTEEEEEETTTCSEEEE---------------------EECCSSEEEEEECTTSCEEEEEETTSEEEEEETTSSSC--
T ss_pred cCCCEEEEEECCCCcEEEE---------------------EeCCCCeeEEEECCCCCEEEEEeCCCCEEEEEccCCce--
Confidence 4689999999987654321 22134689999999999999999999999999998721
Q ss_pred CCCcceeEEecccCCcEEEEEEecCCC-E-EEeeCCCcEEEEeCCCccceeecCCCceeeeEEEEeeceeecccceeccc
Q 003171 228 DDGFGEVLSWQAHRGPVLSLCISSYGD-L-WSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNG 305 (842)
Q Consensus 228 ~~~~~~~~~l~gH~~~V~slafs~dG~-L-~SgS~DgtIrvWd~~t~~~~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~ 305 (842)
....++....+|.+.+.+++|+|||+ | ++++.++++++||..++........+. .....
T Consensus 96 -~~~~~i~~~~~~~~~~~s~~~spDG~~l~v~~~~~~~v~i~d~~~~~~~~~~~~~~------------------~~~~~ 156 (426)
T d1hzua2 96 -TKVAEIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRG------------------MTVDT 156 (426)
T ss_dssp -EEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCE------------------ECSSS
T ss_pred -eEEEEEeCCCCCcceEEeeeecCCCCEEEEeecCCCeEEEEcCCccceeEEeeccC------------------CCccc
Confidence 00011233457888899999999998 5 466789999999998754332221110 01111
Q ss_pred eeeeecCCEEEEEEcCCCCEEEEeCC--CcEEEEEccCCcEEEE-eecCCceEeeeecccCCCcccccceEEEEEecCCC
Q 003171 306 FSSILTSDIKNLLSDHSRAKVWSAGF--LSFALWDARTRELLKV-FNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKK 382 (842)
Q Consensus 306 ~~~~~s~~v~~las~~~~~~v~s~s~--~tI~lWD~~tg~~l~~-l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~ 382 (842)
....+.+....++.++++..++.... ..+.+++..++..+.. ..+++.....+.+++..... .+.....
T Consensus 157 ~~~~~~~~~~~i~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~--------~~a~~~~ 228 (426)
T d1hzua2 157 QTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLADGGWDSSHRYF--------MTAANNS 228 (426)
T ss_dssp CCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECSSSSSCEEEEEECCSSEEEEEECTTSCEE--------EEEETTC
T ss_pred eeecCCCceeEEEECCCCCEEEEecCCCCeEEEEEeccccceeeEEeccCCccEeeeECCCCcEE--------Eeeeecc
Confidence 12222444556666666665554432 3455665555432211 11222211122222211110 0000000
Q ss_pred CccceeeeEeecCcceEEecCCcEEEEeecCccccCCCceEEEEECCCCcEE--EEeCCCeEEEEcC--------CCCee
Q 003171 383 DKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGMIW--TGGANGLLLQWDP--------NGNRL 452 (842)
Q Consensus 383 ~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~al~~s~dg~l~--Sgs~DgtIrlWD~--------~g~~l 452 (842)
. .+... ......+......+... +............+.++ +.+.|+.+.+|+. .+++.
T Consensus 229 ~----~~~~~-------~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~d~~v~~~~~~~~~~~~~~~~~~ 296 (426)
T d1hzua2 229 N----KVAVI-------DSKDRRLSALVDVGKTP-HPGRGANFVHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKV 296 (426)
T ss_dssp S----EEEEE-------ETTTTEEEEEEECSSCC-CCSCCEEEEETTTEEEEEEECTTTCEEEEEECCTTTCTTTBTSEE
T ss_pred c----ceeee-------ecccccEEEEeccCCcc-cccceeeeecCCCCceEEeccCCCceEEEeeccccccccccceEe
Confidence 0 00000 00000011111011100 11111111111122222 2334566666654 24788
Q ss_pred eeeecCCccEEEEE--ecCCEEEE-------EecCcEEEEEeCC-Cccccc---------ccccccCEEEEE--eCCCEE
Q 003171 453 QDFQYLPFAVQCLC--TFGSQIWV-------GYMNGIVQVLDLE-GNLLGG---------WVAHSSPVIKMA--VGAGYI 511 (842)
Q Consensus 453 ~~l~~H~~~V~sls--~dG~~Las-------Gs~DgtIrlWD~~-g~~i~~---------l~gH~~~V~sla--~dg~~l 511 (842)
.++.+|...|.+++ |||++||+ |+.|++|+|||++ +++..+ +..|...|++++ +||+++
T Consensus 297 ~~l~g~~~~v~~v~~sPdg~~l~v~~~~~~s~~~~~tv~vwd~~t~~~~~~~~~~~~~~~~~~~~~rv~~~~fSpDGk~i 376 (426)
T d1hzua2 297 AELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEV 376 (426)
T ss_dssp EEEECSSSCCCCEECCTTCSEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCCEEEEEECSSSSEE
T ss_pred EEEecCCCceeEEEcCCCCceEEEeecCCCCcccCCEEEEEECCCCCcCeEEeccchhcccCCCCccEEEEEECCCCCEE
Confidence 89999999998775 58999994 5678999999986 554332 334566788877 588876
Q ss_pred E-EE----cCCCCeeeccccCCC
Q 003171 512 F-TL----ANHGGIRGWNVTSPG 529 (842)
Q Consensus 512 ~-S~----S~DgtIrvWd~~~~~ 529 (842)
+ |+ +.|++|+|||..+..
T Consensus 377 ~vs~~~~~~~~~~i~v~D~~T~k 399 (426)
T d1hzua2 377 WFSVWNGKNDSSALVVVDDKTLK 399 (426)
T ss_dssp EEEECCCTTSCCEEEEEETTTTE
T ss_pred EEEEecCCCCCCeEEEEECCCCe
Confidence 4 43 468889999987754
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Probab=99.76 E-value=3.8e-16 Score=162.23 Aligned_cols=250 Identities=9% Similarity=0.082 Sum_probs=170.9
Q ss_pred ecCCCEEEEeCCCCccccccccccccCCCCCCCCCCeeeeeecCCCeEEEEEcCCCCEE-EEEeCCCcEEEEECCCCccC
Q 003171 148 GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVV-WSGHRDGRIMCWKMNARLLD 226 (842)
Q Consensus 148 ~~D~~vrvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~V~~la~dpdg~~L-aSGs~DGtIrlWdl~~g~~~ 226 (842)
+.|++|+|||+++.+.... +.....+..++++|||++| ++++.+++|++||+.++
T Consensus 9 ~~~~~v~v~D~~t~~~~~~---------------------i~~g~~p~~va~spdG~~l~v~~~~~~~i~v~d~~t~--- 64 (301)
T d1l0qa2 9 SESDNISVIDVTSNKVTAT---------------------IPVGSNPMGAVISPDGTKVYVANAHSNDVSIIDTATN--- 64 (301)
T ss_dssp TTTTEEEEEETTTTEEEEE---------------------EECSSSEEEEEECTTSSEEEEEEGGGTEEEEEETTTT---
T ss_pred CCCCEEEEEECCCCeEEEE---------------------EECCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCC---
Confidence 4578999999987643221 1113356789999999987 57778999999999987
Q ss_pred CCCCcceeEEecccCCcEEEEEEecCCC-E-EEeeCCCcEEEEeCCCccceeecCCCceeeeEEEEeeceeecccceecc
Q 003171 227 SDDGFGEVLSWQAHRGPVLSLCISSYGD-L-WSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVN 304 (842)
Q Consensus 227 ~~~~~~~~~~l~gH~~~V~slafs~dG~-L-~SgS~DgtIrvWd~~t~~~~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~ 304 (842)
+.+.++..|.. +..++|+++|. + ++++.++.+++|+..+++....+..
T Consensus 65 -----~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------ 114 (301)
T d1l0qa2 65 -----NVIATVPAGSS-PQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKT------------------------ 114 (301)
T ss_dssp -----EEEEEEECSSS-EEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEEC------------------------
T ss_pred -----ceeeeeecccc-ccccccccccccccccccccceeeecccccceeeeeccc------------------------
Confidence 66777777765 57899999997 3 5778899999999976532221110
Q ss_pred ceeeeecCCEEEEEEcCCCCEEEEeC--CCcEEEEEccCCcEEEEeecCCceEeeeecccCCCcccccceEEEEEecCCC
Q 003171 305 GFSSILTSDIKNLLSDHSRAKVWSAG--FLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKK 382 (842)
Q Consensus 305 ~~~~~~s~~v~~las~~~~~~v~s~s--~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~ 382 (842)
.....++++++++..++.+. +.++.+|+..+++.+..+..+.
T Consensus 115 ------~~~~~~~~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------------ 158 (301)
T d1l0qa2 115 ------GKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVGR------------------------------ 158 (301)
T ss_dssp ------SSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECCS------------------------------
T ss_pred ------cccceEEEeecCCCeeeeeeccccceeeeeccccceeeecccCC------------------------------
Confidence 22345566777777665443 4678999998887765543211
Q ss_pred CccceeeeEeecCcceEEecCCcEEEEeecCccccCCCceEEEEECCCCc-EEEEeC-CCeEEEEcCC-CCeeeeeecCC
Q 003171 383 DKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGM-IWTGGA-NGLLLQWDPN-GNRLQDFQYLP 459 (842)
Q Consensus 383 ~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~al~~s~dg~-l~Sgs~-DgtIrlWD~~-g~~l~~l~~H~ 459 (842)
.+..+++++++. +++++. ++.+.+|+.. .+....+..+.
T Consensus 159 --------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (301)
T d1l0qa2 159 --------------------------------------SPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVKVEA 200 (301)
T ss_dssp --------------------------------------SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSS
T ss_pred --------------------------------------CceEEEeeccccceeeecccccccccccccceeeeecccccC
Confidence 122345666665 555554 4667788874 45555555444
Q ss_pred ccEEEE--EecCCEEEEEec---CcEEEEEeCC-CcccccccccccCEEEEE--eCCCEE-EEEcCCCCeeeccccC
Q 003171 460 FAVQCL--CTFGSQIWVGYM---NGIVQVLDLE-GNLLGGWVAHSSPVIKMA--VGAGYI-FTLANHGGIRGWNVTS 527 (842)
Q Consensus 460 ~~V~sl--s~dG~~LasGs~---DgtIrlWD~~-g~~i~~l~gH~~~V~sla--~dg~~l-~S~S~DgtIrvWd~~~ 527 (842)
.+..+ .++|++++++.. +++|++||+. ++++..+..+ ..+.+|+ +||++| ++++.|++|++||+.+
T Consensus 201 -~~~~~~~~~~g~~~~v~~~~~~~~~v~v~D~~t~~~~~~~~~~-~~~~~va~spdg~~l~va~~~~~~i~v~D~~t 275 (301)
T d1l0qa2 201 -APSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVG-PDPAGIAVTPDGKKVYVALSFCNTVSVIDTAT 275 (301)
T ss_dssp -EEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEECC-SSEEEEEECTTSSEEEEEETTTTEEEEEETTT
T ss_pred -CcceeeccccccccccccccceeeeeeeeecCCCeEEEEEcCC-CCEEEEEEeCCCCEEEEEECCCCeEEEEECCC
Confidence 34444 457887776543 4689999987 6777766554 4577777 588876 5888999999999765
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.76 E-value=2.1e-17 Score=184.22 Aligned_cols=279 Identities=10% Similarity=-0.045 Sum_probs=172.2
Q ss_pred CCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCCC-EEEeeCCCcEEEEeCCCccceeec-
Q 003171 201 EASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEKALSL- 278 (842)
Q Consensus 201 pdg~~LaSGs~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~~t~~~~l~~- 278 (842)
+.+-++++++.||+|++||+.++ +.+.++.+|. .+.+|+|||||+ |++++.|++|++||+.+++.....
T Consensus 30 ~~~~~~V~~~~dg~v~vwD~~t~--------~~~~~l~~g~-~~~~vafSPDGk~l~~~~~d~~v~vwd~~t~~~~~~~~ 100 (426)
T d1hzua2 30 LPNLFSVTLRDAGQIALVDGDSK--------KIVKVIDTGY-AVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAE 100 (426)
T ss_dssp GGGEEEEEETTTTEEEEEETTTC--------SEEEEEECCS-SEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEE
T ss_pred CCeEEEEEEcCCCEEEEEECCCC--------cEEEEEeCCC-CeeEEEECCCCCEEEEEeCCCCEEEEEccCCceeEEEE
Confidence 34446788999999999999997 7788888875 589999999998 789999999999999886533211
Q ss_pred -CCCceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcCCCCEEEEeC--CCcEEEEEccCCcEEEEeecCCceE
Q 003171 279 -KPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG--FLSFALWDARTRELLKVFNIDGQIE 355 (842)
Q Consensus 279 -~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s--~~tI~lWD~~tg~~l~~l~~~~~~~ 355 (842)
..... + ..-+...++++++..++++. +.++++||..+++++..+..+....
T Consensus 101 i~~~~~----------------~----------~~~~~s~~~spDG~~l~v~~~~~~~v~i~d~~~~~~~~~~~~~~~~~ 154 (426)
T d1hzua2 101 IKIGIE----------------A----------RSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTV 154 (426)
T ss_dssp EECCSE----------------E----------EEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECS
T ss_pred EeCCCC----------------C----------cceEEeeeecCCCCEEEEeecCCCeEEEEcCCccceeEEeeccCCCc
Confidence 10000 0 00111233455677665543 5789999999999988876544321
Q ss_pred eeeecccCCCcccccceEEEEEecCCCCccceeeeEeecCcceEEecC--CcEEEEee-cC-----ccccCCCceEEEEE
Q 003171 356 NRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAA--DAVRRVAA-KG-----GFGDDNRRTEALTT 427 (842)
Q Consensus 356 ~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~--~~v~~v~~-~g-----~~~~~~~~v~al~~ 427 (842)
....+....... .+.+.+++...+.... ..+..+.. .+ ....+...+..+++
T Consensus 155 ~~~~~~~~~~~~--------------------~i~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (426)
T d1hzua2 155 DTQTYHPEPRVA--------------------AIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLADGGW 214 (426)
T ss_dssp SSCCEESCCCEE--------------------EEEECSSSSEEEEEETTTTEEEEEECSSSSSCEEEEEECCSSEEEEEE
T ss_pred cceeecCCCcee--------------------EEEECCCCCEEEEecCCCCeEEEEEeccccceeeEEeccCCccEeeeE
Confidence 111111111000 0111111111111111 11111111 00 11234556778999
Q ss_pred CCCCc-EEEEe-CCCeEEEEcC-CCCeeeeeec----CCccEEEEEecCC---EEEEEecCcEEEEEeCC--------Cc
Q 003171 428 SIDGM-IWTGG-ANGLLLQWDP-NGNRLQDFQY----LPFAVQCLCTFGS---QIWVGYMNGIVQVLDLE--------GN 489 (842)
Q Consensus 428 s~dg~-l~Sgs-~DgtIrlWD~-~g~~l~~l~~----H~~~V~sls~dG~---~LasGs~DgtIrlWD~~--------g~ 489 (842)
+|+|+ ++++. .+..+.+|+. +++.+..+.. |......+...+. ..++.+.|+.+.+|+.. ++
T Consensus 215 ~~~g~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~~~~~~~~~~~~~~~~ 294 (426)
T d1hzua2 215 DSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWK 294 (426)
T ss_dssp CTTSCEEEEEETTCSEEEEEETTTTEEEEEEECSSCCCCSCCEEEEETTTEEEEEEECTTTCEEEEEECCTTTCTTTBTS
T ss_pred CCCCcEEEeeeecccceeeeecccccEEEEeccCCcccccceeeeecCCCCceEEeccCCCceEEEeeccccccccccce
Confidence 99998 44444 5677999999 6777666543 2222223333333 22334468899999853 35
Q ss_pred ccccccccccCEEEEE--eCCCEEE-------EEcCCCCeeeccccCCCCCcch
Q 003171 490 LLGGWVAHSSPVIKMA--VGAGYIF-------TLANHGGIRGWNVTSPGPLDSI 534 (842)
Q Consensus 490 ~i~~l~gH~~~V~sla--~dg~~l~-------S~S~DgtIrvWd~~~~~~~d~~ 534 (842)
+..++.+|...|.+++ +|+++++ +++.|++|++||+.+..+...+
T Consensus 295 ~~~~l~g~~~~v~~v~~sPdg~~l~v~~~~~~s~~~~~tv~vwd~~t~~~~~~~ 348 (426)
T d1hzua2 295 KVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQV 348 (426)
T ss_dssp EEEEEECSSSCCCCEECCTTCSEEEECCTTCSSHHHHTCEEEEETTCTTSCCEE
T ss_pred EeEEEecCCCceeEEEcCCCCceEEEeecCCCCcccCCEEEEEECCCCCcCeEE
Confidence 6788999999999888 5888988 5678999999999887665443
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.73 E-value=3.6e-17 Score=174.46 Aligned_cols=287 Identities=11% Similarity=0.052 Sum_probs=163.9
Q ss_pred eeEEEEec--CCEEEE-ecCC--CEEEEeCCCCccccccccccccCCCCCCCCCCeeeeeecCCCeEEEEEcCCCCEEEE
Q 003171 134 FLRTIVCT--EEQLWA-GGEN--GLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWS 208 (842)
Q Consensus 134 ~~~~l~~~--~~~l~~-~~D~--~vrvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~V~~la~dpdg~~LaS 208 (842)
.++.++.. ++.|+. +.+. .|++||+++..... +. .+ ...|.+++|+|+|++|++
T Consensus 44 ~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~~~~~~------------------~~--~~-~~~v~~~~~spdg~~l~~ 102 (360)
T d1k32a3 44 RIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKAEK------------------FE--EN-LGNVFAMGVDRNGKFAVV 102 (360)
T ss_dssp CEEEEEECSSSEEEEEEEETTEEEEEEEETTTCCEEE------------------CC--CC-CCSEEEEEECTTSSEEEE
T ss_pred CEEEEEECCCCCEEEEEEcCCCCEEEEEECCCCcEEE------------------ee--CC-CceEEeeeecccccccce
Confidence 35666665 435544 4443 79999997643211 11 12 678999999999999999
Q ss_pred EeCCCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCCC-EEE----------eeCCCcEEEEeCCCccceee
Q 003171 209 GHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWS----------GSEGGGIKIWPWEAIEKALS 277 (842)
Q Consensus 209 Gs~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~S----------gS~DgtIrvWd~~t~~~~l~ 277 (842)
++.|+.+++|++.++ +....+..|...+.+++|+|||+ |+. ++.++.+++|+..+++...
T Consensus 103 ~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~- 173 (360)
T d1k32a3 103 ANDRFEIMTVDLETG--------KPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFA- 173 (360)
T ss_dssp EETTSEEEEEETTTC--------CEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEEEE-
T ss_pred ecccccccccccccc--------ceeeeeecccccccchhhccceeeeeeeccccccceeeccccceeeeccccCceee-
Confidence 999999999999987 56677889999999999999998 542 3456679999997643221
Q ss_pred cCCCceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcCCCCEEEEeC-CCcEEEEEccCCcEEEEeecCCceEe
Q 003171 278 LKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVFNIDGQIEN 356 (842)
Q Consensus 278 ~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s-~~tI~lWD~~tg~~l~~l~~~~~~~~ 356 (842)
...+ ...+..++.++++..|+.++ +..+++||........ . ......
T Consensus 174 ~~~~-----------------------------~~~~~~~~~spdg~~l~~~s~~~~~~~~d~~~~~~~~--~-~~~~~~ 221 (360)
T d1k32a3 174 ATTE-----------------------------NSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSF--E-VVSKPF 221 (360)
T ss_dssp CSCS-----------------------------SSBEEEEEECTTSCEEEEEESCCCCCEECSSSSCEEC--C-SCBEEE
T ss_pred eccc-----------------------------ccccccccccCCCCEEEEEeCCCceEcccccccceee--c-cccceE
Confidence 1110 12344566677777777665 5688999987655321 0 010000
Q ss_pred eeecccCCCcccccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEee-cC---ccccCCCceEEEEECCCC-
Q 003171 357 RVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAA-KG---GFGDDNRRTEALTTSIDG- 431 (842)
Q Consensus 357 ~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~-~g---~~~~~~~~v~al~~s~dg- 431 (842)
.+.+......... ++............ ..+....+..+.. .+ .+..+...+..+.+...+
T Consensus 222 ~~~~~~~~~~~~~-------~s~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (360)
T d1k32a3 222 VIPLIPGSPNPTK-------LVPRSMTSEAGEYD--------LNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGE 286 (360)
T ss_dssp EEESSTTCCCGGG-------CCCGGGSCCCCCCC--------CTTGGGGCEECSCCCBCEEEEEECSSEEEEEECCCCCS
T ss_pred EEecccCccccce-------ECCCcCccccccee--------ecccccceeecccCcCceeEeeecCCCceEEEEEecCC
Confidence 1111110000000 00000000000000 0000000000000 00 011111222233333332
Q ss_pred --c-EEEEeCCCeEEEEcCCCCeeeeeecCCccEEEE--EecCCEEEEEecCcEEEEEeCC-CcccccccccccC
Q 003171 432 --M-IWTGGANGLLLQWDPNGNRLQDFQYLPFAVQCL--CTFGSQIWVGYMNGIVQVLDLE-GNLLGGWVAHSSP 500 (842)
Q Consensus 432 --~-l~Sgs~DgtIrlWD~~g~~l~~l~~H~~~V~sl--s~dG~~LasGs~DgtIrlWD~~-g~~i~~l~gH~~~ 500 (842)
. +++++.++.|++||+++..+..+ .+.|.++ ++||++|++++.||+|++||++ +....++.-+..+
T Consensus 287 ~~~~~~~~~~~~~i~~~d~~~~~~~~~---~~~v~~~~~SpDG~~l~~~~~Dg~i~v~d~~~~~~~~~~~~d~~~ 358 (360)
T d1k32a3 287 FAAYYQGAPEKGVLLKYDVKTRKVTEV---KNNLTDLRLSADRKTVMVRKDDGKIYTFPLEKPEDERTVETDKRP 358 (360)
T ss_dssp HHHHHHCCCCCEEEEEEETTTCCEEEE---EEEEEEEEECTTSCEEEEEETTSCEEEEESSCTTSCEECCCCSSC
T ss_pred CeeEEEecCCCCEEEEEECCCCeEEEe---cCCcCEEEECCCCCEEEEEECCCeEEEEECCCCCcceEEEecccc
Confidence 2 56788899999999965444444 3457665 5699999999999999999997 5555555444443
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.70 E-value=3.4e-15 Score=157.10 Aligned_cols=277 Identities=12% Similarity=0.058 Sum_probs=163.3
Q ss_pred ecCCCEEEEeCCCCccccccccccccCCCCCCCCCCeeeeeecCCCeEEEEEcCCCCEE-EEEeCCCcEEEEECCCCccC
Q 003171 148 GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVV-WSGHRDGRIMCWKMNARLLD 226 (842)
Q Consensus 148 ~~D~~vrvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~V~~la~dpdg~~L-aSGs~DGtIrlWdl~~g~~~ 226 (842)
+.|++|+|||+++...... +....+ ...+.+++++|||++| ++++.|++|++||+.++
T Consensus 8 ~~d~~v~v~D~~s~~~~~~-----------------i~~~~~-~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~--- 66 (337)
T d1pbyb_ 8 ARPDKLVVIDTEKMAVDKV-----------------ITIADA-GPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTG--- 66 (337)
T ss_dssp ETTTEEEEEETTTTEEEEE-----------------EECTTC-TTCCCCEEECTTSSEEEEEETTTTEEEEEETTTC---
T ss_pred cCCCEEEEEECCCCeEEEE-----------------EECCCC-CCCccEEEECCCCCEEEEEECCCCeEEEEECCCC---
Confidence 5689999999987543321 100001 3356789999999987 57788999999999997
Q ss_pred CCCCcceeEEecccC-----CcEEEEEEecCCC-EEEee------------CCCcEEEEeCCCccceeecCCCceeeeEE
Q 003171 227 SDDGFGEVLSWQAHR-----GPVLSLCISSYGD-LWSGS------------EGGGIKIWPWEAIEKALSLKPEERHTAAL 288 (842)
Q Consensus 227 ~~~~~~~~~~l~gH~-----~~V~slafs~dG~-L~SgS------------~DgtIrvWd~~t~~~~l~~~~~~~~~~~l 288 (842)
+.+..+..|. ..+..++|+|||+ +++++ .+..+.+||..+++......
T Consensus 67 -----~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~--------- 132 (337)
T d1pbyb_ 67 -----ETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFE--------- 132 (337)
T ss_dssp -----CEEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEE---------
T ss_pred -----cEEEEEecCCCcccccceeeEEEcCCCcEEEEeecCCcceeeeccccccceeeccccCCeEEEecc---------
Confidence 5666665543 3345789999998 55554 35667777775533211110
Q ss_pred EEeeceeecccceeccceeeeecCCEEEEEEcCCCCEEEEeCCCcEEEEEccCCcEEEEeecCCceEeeeecccCCCccc
Q 003171 289 IVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGFLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAM 368 (842)
Q Consensus 289 ~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s~~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~~~ 368 (842)
....+..+++++++..+++++ ..+.+||..+++++.++..+.... ...+++......
T Consensus 133 ---------------------~~~~~~~~~~s~dg~~l~~~~-~~~~~~d~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 189 (337)
T d1pbyb_ 133 ---------------------APRQITMLAWARDGSKLYGLG-RDLHVMDPEAGTLVEDKPIQSWEA-ETYAQPDVLAVW 189 (337)
T ss_dssp ---------------------CCSSCCCEEECTTSSCEEEES-SSEEEEETTTTEEEEEECSTTTTT-TTBCCCBCCCCC
T ss_pred ---------------------ccCCceEEEEcCCCCEEEEEc-CCcceeeeecCcEEEEeecCCccc-cceecCCcceee
Confidence 012344567778888887765 457899999999888775432210 001111000000
Q ss_pred -----ccceEEEEEecCCCCccceeeeEeecCcceEEecCC-cEEEEee-cC-----ccccCCCceEEEEECCCCcEEEE
Q 003171 369 -----EDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAAD-AVRRVAA-KG-----GFGDDNRRTEALTTSIDGMIWTG 436 (842)
Q Consensus 369 -----~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~-~v~~v~~-~g-----~~~~~~~~v~al~~s~dg~l~Sg 436 (842)
........... .++.. ....+... ++..+.. .+ .+..+...+..+++++++..+.+
T Consensus 190 ~~~~~~~~~~~~~~~~-----------~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (337)
T d1pbyb_ 190 NQHESSGVMATPFYTA-----------RKDID-PADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFG 257 (337)
T ss_dssp CCCTTTTEEEEEEEEE-----------BTTSC-TTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTSSEEEE
T ss_pred ccccccceeeeeeeee-----------eeccc-eeeecccCccEEEEEcCCCcEEEEEecCCCcceEEEEecccceEEEE
Confidence 00000000000 00000 00001111 1111111 11 12234455667788888875544
Q ss_pred eCCCeEEEEcC-CCCeeeeeecCCccEEEEE--ecCCEEEEEecCcEEEEEeCC-Ccccccccc
Q 003171 437 GANGLLLQWDP-NGNRLQDFQYLPFAVQCLC--TFGSQIWVGYMNGIVQVLDLE-GNLLGGWVA 496 (842)
Q Consensus 437 s~DgtIrlWD~-~g~~l~~l~~H~~~V~sls--~dG~~LasGs~DgtIrlWD~~-g~~i~~l~g 496 (842)
. +++|++||+ +++++..+. +...+.+++ +||++|++|+.|++|+|||++ ++.+.++..
T Consensus 258 ~-~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~s~dG~~l~v~~~~~~i~v~D~~t~~~v~~i~~ 319 (337)
T d1pbyb_ 258 A-YNVLESFDLEKNASIKRVP-LPHSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEKKGQVDL 319 (337)
T ss_dssp E-ESEEEEEETTTTEEEEEEE-CSSCCCEEEECTTSCEEEEESBSSEEEEEETTTCCEEEEEEC
T ss_pred c-cccEEEEECCCCcEEEEEc-CCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCcEEEEEEC
Confidence 3 688999999 688887775 456677765 589999999999999999987 666665543
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Probab=99.64 E-value=4.9e-15 Score=165.81 Aligned_cols=309 Identities=10% Similarity=0.008 Sum_probs=177.5
Q ss_pred CceeEEEEec--CCEEEE-ecCCCEEEEeCCCCccccccccccccCCCCCCCCCCee-eeeecCCCeEEEEEcCCCCEE-
Q 003171 132 GCFLRTIVCT--EEQLWA-GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFK-ESVKGVSSVMCMVGDEASGVV- 206 (842)
Q Consensus 132 ~~~~~~l~~~--~~~l~~-~~D~~vrvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~~~V~~la~dpdg~~L- 206 (842)
+.....++++ ++.+++ +.|++|++||+.+...... .... ...+ .+.+.+.+|+|||++|
T Consensus 61 g~~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~~---------------~~i~~~~~~-~~~~~s~~~SpDG~~l~ 124 (432)
T d1qksa2 61 GYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTV---------------AEIKIGSEA-RSIETSKMEGWEDKYAI 124 (432)
T ss_dssp SSCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEE---------------EEEECCSEE-EEEEECCSTTCTTTEEE
T ss_pred CCCeeEEEECCCCCEEEEEcCCCCEEEEEeeCCCceEE---------------EEEecCCCC-CCeEEecccCCCCCEEE
Confidence 3344455554 557776 5699999999976532110 0000 0011 3466777889999975
Q ss_pred EEEeCCCcEEEEECCCCccCCCCCcceeEEecc-----------cCCcEEEEEEecCCC--EEEeeCCCcEEEEeCCCcc
Q 003171 207 WSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQA-----------HRGPVLSLCISSYGD--LWSGSEGGGIKIWPWEAIE 273 (842)
Q Consensus 207 aSGs~DGtIrlWdl~~g~~~~~~~~~~~~~l~g-----------H~~~V~slafs~dG~--L~SgS~DgtIrvWd~~t~~ 273 (842)
++++.|++|++||.+++ +.+..+.+ +.+.+.+++++|+|. +++.+.++.|.+|+..+.+
T Consensus 125 vs~~~~~~v~i~d~~t~--------~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~vs~~~~~~i~~~d~~~~~ 196 (432)
T d1qksa2 125 AGAYWPPQYVIMDGETL--------EPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLN 196 (432)
T ss_dssp EEEEETTEEEEEETTTC--------CEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSS
T ss_pred EEcCCCCeEEEEeCccc--------cceeeeccCCccccceeccCCCceeEEEECCCCCEEEEEEccCCeEEEEEccCCC
Confidence 78899999999999987 44444443 345677899999997 3688889999999986543
Q ss_pred ceeecCCCceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcCCCCEEEEeC--CCcEEEEEccCCcEEEEeecC
Q 003171 274 KALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG--FLSFALWDARTRELLKVFNID 351 (842)
Q Consensus 274 ~~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s--~~tI~lWD~~tg~~l~~l~~~ 351 (842)
... ...+ .. ......+++++++..++.++ ...+.+||..+++.+..+...
T Consensus 197 ~~~--------~~~i-------------~~-------g~~~~~~~~spdg~~~~va~~~~~~v~v~d~~~~~~~~~~~~g 248 (432)
T d1qksa2 197 NLK--------TTEI-------------SA-------ERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTG 248 (432)
T ss_dssp EEE--------EEEE-------------EC-------CSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECS
T ss_pred cce--------EEEE-------------cc-------cCccccceECCCCCEEEEeccccceEEEeecccceEEEEeccC
Confidence 211 0000 00 11245677888888766665 357999999999887765432
Q ss_pred CceE---eeeecccCCCccc-----ccceEEEEEecCCCCc-----cceeeeEeecCcceEEecCCcEEEEeecCccccC
Q 003171 352 GQIE---NRVDMSLLPDFAM-----EDEFKTKIVTSSKKDK-----AQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDD 418 (842)
Q Consensus 352 ~~~~---~~~~~s~~~~~~~-----~~~~~~~~~s~~~~~~-----~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~ 418 (842)
.... ....+........ ..+..+.++....... ......+.+.+....++..+....++....+..+
T Consensus 249 ~~~~~~~~~~~~~~~~~g~~~~~~~lg~~~v~~~~~~~~~~~~~~~~v~~~~~~~~g~~~~~~s~p~~~~lw~~~~~~~~ 328 (432)
T d1qksa2 249 GQTPHPGRGANFVHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLNPE 328 (432)
T ss_dssp SSSBCCTTCEEEEETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCSEEEEECTTCSS
T ss_pred ccccccCcccceecCCCCceecccccCCceEEecccccccccccccEEEEEEEcCCCCeEEEEecCCccceeecccCCCC
Confidence 1100 0000000000000 0011122222211100 0111223333333444443333333333333333
Q ss_pred CCceEEEEECCCCc-EEEEeCCCeEEEEcC-CCCeeeeeecCCccEEEEE--ecCCEEEEEe-----cCcEEEEEeCC-C
Q 003171 419 NRRTEALTTSIDGM-IWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQCLC--TFGSQIWVGY-----MNGIVQVLDLE-G 488 (842)
Q Consensus 419 ~~~v~al~~s~dg~-l~Sgs~DgtIrlWD~-~g~~l~~l~~H~~~V~sls--~dG~~LasGs-----~DgtIrlWD~~-g 488 (842)
.....++++ ||++ +++++.|+++++||+ ++.++ ..|..+|.+++ +||++||++. .++.|+|||.+ +
T Consensus 329 ~~~~~sv~v-pDg~~la~~s~d~~~k~w~~~~~~~l---~~~~~~v~~~~fS~DG~~v~~S~~~~~~~~g~i~i~D~~T~ 404 (432)
T d1qksa2 329 AEISGSVAV-FDIKAMTGDGSDPEFKTLPIAEWAGI---TEGQPRVVQGEFNKDGTEVWFSVWNGKDQESALVVVDDKTL 404 (432)
T ss_dssp HHHHTCEEE-EEGGGCCCSSSCCCEEEECHHHHHTC---CSSCCEEEEEEECTTSSEEEEEEECCTTSCCEEEEEETTTT
T ss_pred CCeeeEEEE-EechhhcccccCCceEeccccccccc---CCCCCcEEEeEECCCCCEEEEEEecCCCCCCcEEEEECCCc
Confidence 333334555 7876 899999999999998 55433 35677888764 5899887664 46899999986 5
Q ss_pred cccccccc
Q 003171 489 NLLGGWVA 496 (842)
Q Consensus 489 ~~i~~l~g 496 (842)
++...+++
T Consensus 405 k~~~~i~~ 412 (432)
T d1qksa2 405 ELKHVIKD 412 (432)
T ss_dssp EEEEEECC
T ss_pred eEEeEecC
Confidence 66555544
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Probab=99.61 E-value=1.8e-14 Score=152.06 Aligned_cols=69 Identities=4% Similarity=-0.135 Sum_probs=59.1
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEec-ccCCcEEEEEEecCCC-E-EEeeCCCcEEEEeCCCcc
Q 003171 197 MVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQ-AHRGPVLSLCISSYGD-L-WSGSEGGGIKIWPWEAIE 273 (842)
Q Consensus 197 la~dpdg~~LaSGs~DGtIrlWdl~~g~~~~~~~~~~~~~l~-gH~~~V~slafs~dG~-L-~SgS~DgtIrvWd~~t~~ 273 (842)
+++++++++|++++.|++|.+||+.++ +.+.+++ .|...+.+|+|+|||+ | ++++.+++|++||+.+++
T Consensus 2 ~a~~~~~~~l~~~~~~~~v~v~D~~t~--------~~~~t~~~~~~~~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t~~ 73 (346)
T d1jmxb_ 2 PALKAGHEYMIVTNYPNNLHVVDVASD--------TVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCK 73 (346)
T ss_dssp CCCCTTCEEEEEEETTTEEEEEETTTT--------EEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTE
T ss_pred ccCCCCCcEEEEEcCCCEEEEEECCCC--------CEEEEEEcCCCCCcceEEECCCCCEEEEEECCCCcEEEEeCccCe
Confidence 467889999999999999999999997 6677776 5666788999999998 4 578899999999998754
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.61 E-value=6e-15 Score=155.15 Aligned_cols=282 Identities=9% Similarity=0.008 Sum_probs=156.2
Q ss_pred CEEEEEeCCCcEEEEECCCCccCCCCCcceeEEecc--cCCcEEEEEEecCCC-E-EEeeCCCcEEEEeCCCccceeecC
Q 003171 204 GVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQA--HRGPVLSLCISSYGD-L-WSGSEGGGIKIWPWEAIEKALSLK 279 (842)
Q Consensus 204 ~~LaSGs~DGtIrlWdl~~g~~~~~~~~~~~~~l~g--H~~~V~slafs~dG~-L-~SgS~DgtIrvWd~~t~~~~l~~~ 279 (842)
.++++++.|++|++||+.++ +.+.++.. +...+.+++|+|||+ | ++++.|+.|++||+.+++...+..
T Consensus 2 ~~~vt~~~d~~v~v~D~~s~--------~~~~~i~~~~~~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~~~~~~~~ 73 (337)
T d1pbyb_ 2 DYILAPARPDKLVVIDTEKM--------AVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRID 73 (337)
T ss_dssp EEEEEEETTTEEEEEETTTT--------EEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEE
T ss_pred eEEEEEcCCCEEEEEECCCC--------eEEEEEECCCCCCCccEEEECCCCCEEEEEECCCCeEEEEECCCCcEEEEEe
Confidence 47999999999999999997 56666643 445688999999998 5 578899999999998865433222
Q ss_pred CCceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcCCCCEEEEeC-------------CCcEEEEEccCCcEEE
Q 003171 280 PEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-------------FLSFALWDARTRELLK 346 (842)
Q Consensus 280 ~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s-------------~~tI~lWD~~tg~~l~ 346 (842)
....... ......+++++++..++.+. +..+.+||..+++++.
T Consensus 74 ~~~~~~~------------------------~~~~~~v~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 129 (337)
T d1pbyb_ 74 LSTPEER------------------------VKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRK 129 (337)
T ss_dssp CCBTTEE------------------------EECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEE
T ss_pred cCCCccc------------------------ccceeeEEEcCCCcEEEEeecCCcceeeeccccccceeeccccCCeEEE
Confidence 1100000 00111244455555554442 3468899999999988
Q ss_pred EeecCCceEeeeecccCCCccc--ccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEeecCccccCCCc--e
Q 003171 347 VFNIDGQIENRVDMSLLPDFAM--EDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRR--T 422 (842)
Q Consensus 347 ~l~~~~~~~~~~~~s~~~~~~~--~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~--v 422 (842)
.+...... ..+.+++.....+ ..+.. ++... ..+...++.... .........++.. ++.. ...... .
T Consensus 130 ~~~~~~~~-~~~~~s~dg~~l~~~~~~~~--~~d~~-~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~---~~~~~~~~~ 200 (337)
T d1pbyb_ 130 AFEAPRQI-TMLAWARDGSKLYGLGRDLH--VMDPE-AGTLVEDKPIQS-WEAETYAQPDVLA-VWNQ---HESSGVMAT 200 (337)
T ss_dssp EEECCSSC-CCEEECTTSSCEEEESSSEE--EEETT-TTEEEEEECSTT-TTTTTBCCCBCCC-CCCC---CTTTTEEEE
T ss_pred eccccCCc-eEEEEcCCCCEEEEEcCCcc--eeeee-cCcEEEEeecCC-ccccceecCCcce-eecc---ccccceeee
Confidence 87654432 2233333322211 01111 11100 000000000000 0000000000000 0000 000000 1
Q ss_pred EEEEE-CCCCcEEEEeCCCeEEEEcC-CCCeee-eeecCCccEEEEE--ecCCEEEEEecCcEEEEEeCC-Ccccccccc
Q 003171 423 EALTT-SIDGMIWTGGANGLLLQWDP-NGNRLQ-DFQYLPFAVQCLC--TFGSQIWVGYMNGIVQVLDLE-GNLLGGWVA 496 (842)
Q Consensus 423 ~al~~-s~dg~l~Sgs~DgtIrlWD~-~g~~l~-~l~~H~~~V~sls--~dG~~LasGs~DgtIrlWD~~-g~~i~~l~g 496 (842)
..... ........++.++.+.+||. +++... .+..|...+.++. +++.+++++ +++|++||++ ++++..+ .
T Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~v~d~~~~~~~~~~-~ 277 (337)
T d1pbyb_ 201 PFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRV-P 277 (337)
T ss_dssp EEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEE-E
T ss_pred eeeeeeeccceeeecccCccEEEEEcCCCcEEEEEecCCCcceEEEEecccceEEEEc--cccEEEEECCCCcEEEEE-c
Confidence 11111 12222333444667999999 676554 3555666666655 456777765 6899999998 5666655 3
Q ss_pred cccCEEEEE--eCCCEEEEEcCCCCeeeccccCCC
Q 003171 497 HSSPVIKMA--VGAGYIFTLANHGGIRGWNVTSPG 529 (842)
Q Consensus 497 H~~~V~sla--~dg~~l~S~S~DgtIrvWd~~~~~ 529 (842)
|...+.+++ +||+++++++.|++|++||+.+..
T Consensus 278 ~~~~~~~~~~s~dG~~l~v~~~~~~i~v~D~~t~~ 312 (337)
T d1pbyb_ 278 LPHSYYSVNVSTDGSTVWLGGALGDLAAYDAETLE 312 (337)
T ss_dssp CSSCCCEEEECTTSCEEEEESBSSEEEEEETTTCC
T ss_pred CCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCc
Confidence 556777877 589999999999999999987643
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Probab=99.53 E-value=2.7e-12 Score=132.48 Aligned_cols=231 Identities=11% Similarity=0.104 Sum_probs=149.9
Q ss_pred EEEEec--CCEEEEe--cCCCEEEEeCCCCccccccccccccCCCCCCCCCCeeeeeecCCCeEEEEEcCCCCEEE-EEe
Q 003171 136 RTIVCT--EEQLWAG--GENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVW-SGH 210 (842)
Q Consensus 136 ~~l~~~--~~~l~~~--~D~~vrvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~V~~la~dpdg~~La-SGs 210 (842)
+.++.+ ++.|+++ .++.|++||+.+...... +.....+..++++++++.++ ++.
T Consensus 35 ~~va~spdG~~l~v~~~~~~~i~v~d~~t~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~ 93 (301)
T d1l0qa2 35 MGAVISPDGTKVYVANAHSNDVSIIDTATNNVIAT---------------------VPAGSSPQGVAVSPDGKQVYVTNM 93 (301)
T ss_dssp EEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEE---------------------EECSSSEEEEEECTTSSEEEEEET
T ss_pred eEEEEeCCCCEEEEEECCCCEEEEEECCCCceeee---------------------eecccccccccccccccccccccc
Confidence 455554 5567753 478999999987543211 11133567899999998655 556
Q ss_pred CCCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCCC-E-EEeeCCCcEEEEeCCCccceeecCCCceeeeEE
Q 003171 211 RDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-L-WSGSEGGGIKIWPWEAIEKALSLKPEERHTAAL 288 (842)
Q Consensus 211 ~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L-~SgS~DgtIrvWd~~t~~~~l~~~~~~~~~~~l 288 (842)
.++.+++|+..++ +....+. +...+.+++|+|+|. + ++++.|+++++|+..+......+..
T Consensus 94 ~~~~~~~~~~~~~--------~~~~~~~-~~~~~~~~~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------- 156 (301)
T d1l0qa2 94 ASSTLSVIDTTSN--------TVAGTVK-TGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSV-------- 156 (301)
T ss_dssp TTTEEEEEETTTT--------EEEEEEE-CSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEEC--------
T ss_pred ccceeeecccccc--------eeeeecc-ccccceEEEeecCCCeeeeeeccccceeeeeccccceeeeccc--------
Confidence 7778999999886 4444444 445678899999998 3 5788899999999976432211110
Q ss_pred EEeeceeecccceeccceeeeecCCEEEEEEcCCCCEEEEeCC--CcEEEEEccCCcEEEEeecCCceEeeeecccCCCc
Q 003171 289 IVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGF--LSFALWDARTRELLKVFNIDGQIENRVDMSLLPDF 366 (842)
Q Consensus 289 ~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s~--~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~ 366 (842)
......++..+++..++++.. ..+.+|+....+....+..+
T Consensus 157 ----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------- 199 (301)
T d1l0qa2 157 ----------------------GRSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVKVE--------------- 199 (301)
T ss_dssp ----------------------CSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECS---------------
T ss_pred ----------------------CCCceEEEeeccccceeeecccccccccccccceeeeeccccc---------------
Confidence 123455666777776666542 35667776655543332211
Q ss_pred ccccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEeecCccccCCCceEEEEECCCCc-EEEEe---CCCeE
Q 003171 367 AMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGM-IWTGG---ANGLL 442 (842)
Q Consensus 367 ~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~g~~~~~~~~v~al~~s~dg~-l~Sgs---~DgtI 442 (842)
..+..++++++|. ++.++ .+++|
T Consensus 200 -----------------------------------------------------~~~~~~~~~~~g~~~~v~~~~~~~~~v 226 (301)
T d1l0qa2 200 -----------------------------------------------------AAPSGIAVNPEGTKAYVTNVDKYFNTV 226 (301)
T ss_dssp -----------------------------------------------------SEEEEEEECTTSSEEEEEEECSSCCEE
T ss_pred -----------------------------------------------------CCcceeeccccccccccccccceeeee
Confidence 1122345666665 44333 34689
Q ss_pred EEEcC-CCCeeeeeecCCccEEEEE--ecCCEEE-EEecCcEEEEEeCC-Cccccccc
Q 003171 443 LQWDP-NGNRLQDFQYLPFAVQCLC--TFGSQIW-VGYMNGIVQVLDLE-GNLLGGWV 495 (842)
Q Consensus 443 rlWD~-~g~~l~~l~~H~~~V~sls--~dG~~La-sGs~DgtIrlWD~~-g~~i~~l~ 495 (842)
++||+ +++++.++..+ ..+.+++ +||++|+ +++.|++|++||++ +++++++.
T Consensus 227 ~v~D~~t~~~~~~~~~~-~~~~~va~spdg~~l~va~~~~~~i~v~D~~t~~~~~~~~ 283 (301)
T d1l0qa2 227 SMIDTGTNKITARIPVG-PDPAGIAVTPDGKKVYVALSFCNTVSVIDTATNTITATMA 283 (301)
T ss_dssp EEEETTTTEEEEEEECC-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE
T ss_pred eeeecCCCeEEEEEcCC-CCEEEEEEeCCCCEEEEEECCCCeEEEEECCCCeEEEEEe
Confidence 99999 78888887654 4567665 5899875 66679999999987 67766653
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.52 E-value=6.6e-13 Score=141.33 Aligned_cols=277 Identities=9% Similarity=-0.013 Sum_probs=159.5
Q ss_pred EEEcCCCCEEEEEe-----CCCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCCC-EEE----------eeC
Q 003171 197 MVGDEASGVVWSGH-----RDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWS----------GSE 260 (842)
Q Consensus 197 la~dpdg~~LaSGs-----~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~S----------gS~ 260 (842)
.+.+|||+.++... .+++|.+||..++ +.+.++.++..+ .++|||||+ |+. ++.
T Consensus 7 ~a~spdg~~~~v~~~~~~~~~~~v~v~D~~tg--------~~~~~~~~g~~~--~~a~SpDg~~l~v~~~~~~~~~~g~~ 76 (355)
T d2bbkh_ 7 EAPAPDARRVYVNDPAHFAAVTQQFVIDGEAG--------RVIGMIDGGFLP--NPVVADDGSFIAHASTVFSRIARGER 76 (355)
T ss_dssp CCCCCCTTEEEEEECGGGCSSEEEEEEETTTT--------EEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEE
T ss_pred EeeCCCCCEEEEEecccCCCcCeEEEEECCCC--------cEEEEEECCCCC--ceEEcCCCCEEEEEeCCCccccccCC
Confidence 35578999988753 5668999999997 666777666555 799999998 653 345
Q ss_pred CCcEEEEeCCCccceeecCCCceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcCCCCEEEEeC---CCcEEEE
Q 003171 261 GGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG---FLSFALW 337 (842)
Q Consensus 261 DgtIrvWd~~t~~~~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s---~~tI~lW 337 (842)
|+.|++||+.+++..-........ .. .. ......+++++++..++.++ +..+.+|
T Consensus 77 d~~v~v~D~~t~~~~~~~~~~~~~----------------~~--~~----~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~ 134 (355)
T d2bbkh_ 77 TDYVEVFDPVTLLPTADIELPDAP----------------RF--LV----GTYPWMTSLTPDGKTLLFYQFSPAPAVGVV 134 (355)
T ss_dssp EEEEEEECTTTCCEEEEEEETTCC----------------CC--CB----SCCGGGEEECTTSSEEEEEECSSSCEEEEE
T ss_pred CCEEEEEECCCCCEEEEEecCCcc----------------ee--ec----CCCCceEEEecCCCeeEEecCCCCceeeee
Confidence 899999999875432221100000 00 00 01122355667777665543 3578999
Q ss_pred EccCCcEEEEeecCCceEeeeecccCCCcccccceEEEEEecCCCCccceeeeEeecCcceEEecC-Cc-EEEEeecCcc
Q 003171 338 DARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAA-DA-VRRVAAKGGF 415 (842)
Q Consensus 338 D~~tg~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~-~~-v~~v~~~g~~ 415 (842)
|..+++.+.++............ ....+.+.+++...++... .+ +.........
T Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~------------------------~~~~~~~~~dg~~~~v~~~~~~~~~~~~~~~~~ 190 (355)
T d2bbkh_ 135 DLEGKAFKRMLDVPDCYHIFPTA------------------------PDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFH 190 (355)
T ss_dssp ETTTTEEEEEEECCSEEEEEEEE------------------------TTEEEEEETTSCEEEEECCSSSCCEEEECCCCS
T ss_pred ecCCCcEeeEEecCCcceEeecC------------------------CcceEEEcCCCCEEEEEecCCCeEEEEeccccc
Confidence 99999998877654322100000 0001122222222222111 11 1111111001
Q ss_pred ccCCCceEEEEE-CCCCcEEEEeCCCeEEEEcCC-CCe--eeeeecC------------CccEEEEEecCCEEEEEecC-
Q 003171 416 GDDNRRTEALTT-SIDGMIWTGGANGLLLQWDPN-GNR--LQDFQYL------------PFAVQCLCTFGSQIWVGYMN- 478 (842)
Q Consensus 416 ~~~~~~v~al~~-s~dg~l~Sgs~DgtIrlWD~~-g~~--l~~l~~H------------~~~V~sls~dG~~LasGs~D- 478 (842)
..+...+...++ .+++.++.++.++.+.+|+.. ++. +.....| ......++++|.+++....+
T Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~d~~~~~~~~~~~ 270 (355)
T d2bbkh_ 191 PEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQR 270 (355)
T ss_dssp CTTSCBCSCCEEETTTTEEEEEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEEC
T ss_pred ceecceeeeccccCCCCeEEEecCCCeEEEEecCCCcEEEEeccCCcccceEeeeeeccceEEEEEeCCCCeEEEEeccC
Confidence 112222333333 445568888999999999994 432 2222222 12234566788877776543
Q ss_pred ---------cEEEEEeCC-CcccccccccccCEEEEE--eCCC--EEEEEcCCCCeeeccccCCCC
Q 003171 479 ---------GIVQVLDLE-GNLLGGWVAHSSPVIKMA--VGAG--YIFTLANHGGIRGWNVTSPGP 530 (842)
Q Consensus 479 ---------gtIrlWD~~-g~~i~~l~gH~~~V~sla--~dg~--~l~S~S~DgtIrvWd~~~~~~ 530 (842)
.+|++||+. ++.+..+..+ ..+.+++ +||+ .+++++.|++|++||+++...
T Consensus 271 ~~~~~~~~~~~v~v~d~~t~~~~~~~~~~-~~~~~~a~spDG~~~l~v~~~~d~~i~v~D~~tg~~ 335 (355)
T d2bbkh_ 271 DEWRHKTASRFVVVLDAKTGERLAKFEMG-HEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEE 335 (355)
T ss_dssp CTTCTTSCEEEEEEEETTTCCEEEEEEEE-EEECEEEECCSSSCEEEEEETTTTEEEEEETTTCCE
T ss_pred CceeecCCCCeEEEEeCCCCcEEEEecCC-CCEEEEEEcCCCCeEEEEEECCCCEEEEEECCCCCE
Confidence 479999987 6777776543 4467776 5787 356888999999999877543
|
| >d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]
Probab=99.49 E-value=8e-12 Score=134.11 Aligned_cols=284 Identities=7% Similarity=-0.114 Sum_probs=155.0
Q ss_pred CCCeEEEEEcCCCCEEEEE-----eCCCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCCC-EEEe------
Q 003171 191 VSSVMCMVGDEASGVVWSG-----HRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSG------ 258 (842)
Q Consensus 191 ~~~V~~la~dpdg~~LaSG-----s~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~Sg------ 258 (842)
.+++.+++++|||+.++.. +.++.+.+||..++ +.+.++.+|..+ .++|||||+ |+++
T Consensus 20 ~~p~~~~a~spdg~~~~~~~~~~~~~~~~v~v~D~~tg--------~~~~~~~~~~~~--~~a~SpDG~~l~va~~~~~~ 89 (373)
T d2madh_ 20 DGPTNDEAPGADGRRSYINLPAHHSAIIQQWVLDAGSG--------SILGHVNGGFLP--NPVAAHSGSEFALASTSFSR 89 (373)
T ss_pred CCCccccccCCCCCEEEEEcccccCCCceEEEEECCCC--------CEEEEEeCCCCc--cEEEcCCCCEEEEEeecCCc
Confidence 6789999999999998864 23457889998887 666677776654 799999998 5544
Q ss_pred ----eCCCcEEEEeCCCccceeecCCCceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcCCCCEE--EEeC-C
Q 003171 259 ----SEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKV--WSAG-F 331 (842)
Q Consensus 259 ----S~DgtIrvWd~~t~~~~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v--~s~s-~ 331 (842)
+.+++|++||+.+++............. .. ......+++++++..+ +... +
T Consensus 90 ~~~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~--------------------~~--~~~~~~~~~s~dg~~~~v~~~~~~ 147 (373)
T d2madh_ 90 IAKGKRTDYVEVFDPVTFLPIADIELPDAPRF--------------------DV--GPYSWMNANTPNNADLLFFQFAAG 147 (373)
T ss_pred ccccccceEEEEEECCCCcEEEEEecCCccee--------------------Ee--ccCCCcEEEEeCCCcEEEEEEcCC
Confidence 4578899999987654322211111000 00 1111223334444433 3322 3
Q ss_pred CcEEEEEccCCcEEEEeecCCceEeeeecccCCCcccccceEEEEEecCCCCccceeeeEeecCcceEEecCCc-EEEEe
Q 003171 332 LSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADA-VRRVA 410 (842)
Q Consensus 332 ~tI~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~-v~~v~ 410 (842)
..+.+|+..+++.+......... .+++..... ++... .++.........+ .....
T Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~----~~s~~g~~~--------~v~~~------------~dg~~~~~~~~~~~~~~~~ 203 (373)
T d2madh_ 148 PAVGLVVQGGSSDDQLLSSPTCY----HIHPGAPST--------FYLLC------------AQGGLAKTDHAGGAAGAGL 203 (373)
T ss_pred CceEEeeccCCeEEEEeccceeE----EEecCCCcE--------EEEEc------------CCCeEEEEEcCCceeeEEE
Confidence 46788888887765544321111 111111100 00000 0000000000000 00000
Q ss_pred ecC-ccccCCCceEEEEECCCCcEEEEeCCCeEEEEcCC-CCe--eeeeecCCcc------------EEEEEecCC----
Q 003171 411 AKG-GFGDDNRRTEALTTSIDGMIWTGGANGLLLQWDPN-GNR--LQDFQYLPFA------------VQCLCTFGS---- 470 (842)
Q Consensus 411 ~~g-~~~~~~~~v~al~~s~dg~l~Sgs~DgtIrlWD~~-g~~--l~~l~~H~~~------------V~sls~dG~---- 470 (842)
... ...........+.+++++.++..+.++++.+|+.. +.. +..+..+... ..+++++|.
T Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 283 (373)
T d2madh_ 204 VGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYL 283 (373)
T ss_pred eeeccccCccceeeeEEECCCceEEEecCCceEEEEEcCCCeEEEEEeeccccCcEEeeeeccCcceeeEEecCCCeEEE
Confidence 000 00111222334567777777777788889999984 322 2222222111 112233444
Q ss_pred ------EEEEEecCcEEEEEeCC-CcccccccccccCEEEEE--eCCCE--EEEEcCCCCeeeccccCCCCC
Q 003171 471 ------QIWVGYMNGIVQVLDLE-GNLLGGWVAHSSPVIKMA--VGAGY--IFTLANHGGIRGWNVTSPGPL 531 (842)
Q Consensus 471 ------~LasGs~DgtIrlWD~~-g~~i~~l~gH~~~V~sla--~dg~~--l~S~S~DgtIrvWd~~~~~~~ 531 (842)
.+++...+++|.+||+. ++.+..+. |...+.+++ +||+. +++++.|++|++||+.+...+
T Consensus 284 ~~~~~~~~~~~~~~~~v~~~d~~t~~~~~~~~-~~~~~~~~a~spDG~~~l~vt~~~d~~v~v~D~~tg~~~ 354 (373)
T d2madh_ 284 LTSEQSAWKLHAAAKEVTSVTGLVGQTSSQIS-LGHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQD 354 (373)
T ss_pred ecCCCceEEeecCCCeEEEEECCCCcEEEEec-CCCCeeEEEECCCCCEEEEEEeCCCCeEEEEECCCCCEE
Confidence 44455667899999986 66666553 556777777 48874 468999999999998875543
|
| >d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]
Probab=99.45 E-value=3.1e-11 Score=129.39 Aligned_cols=293 Identities=10% Similarity=-0.071 Sum_probs=155.7
Q ss_pred cCCEEEEe------cCCCEEEEeCCCCccccccccccccCCCCCCCCCCeeeeeecCCCeEEEEEcCCCCEEEEEe----
Q 003171 141 TEEQLWAG------GENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGH---- 210 (842)
Q Consensus 141 ~~~~l~~~------~D~~vrvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~V~~la~dpdg~~LaSGs---- 210 (842)
+++++|+. .++.|.+||.++..... .+. .+....++|+|||++|++++
T Consensus 31 dg~~~~~~~~~~~~~~~~v~v~D~~tg~~~~---------------------~~~-~~~~~~~a~SpDG~~l~va~~~~~ 88 (373)
T d2madh_ 31 DGRRSYINLPAHHSAIIQQWVLDAGSGSILG---------------------HVN-GGFLPNPVAAHSGSEFALASTSFS 88 (373)
T ss_pred CCCEEEEEcccccCCCceEEEEECCCCCEEE---------------------EEe-CCCCccEEEcCCCCEEEEEeecCC
Confidence 56677653 24578899987654322 122 22233689999999999875
Q ss_pred ------CCCcEEEEECCCCccCCCCCcceeEEecccCCcE-------EEEEEecCCC-EE--EeeCCCcEEEEeCCCccc
Q 003171 211 ------RDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPV-------LSLCISSYGD-LW--SGSEGGGIKIWPWEAIEK 274 (842)
Q Consensus 211 ------~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V-------~slafs~dG~-L~--SgS~DgtIrvWd~~t~~~ 274 (842)
.|+.|++||..++ +....+..|.... ..++|+++|+ ++ ....++.+.+|+..+.+.
T Consensus 89 ~~~~~~~~~~v~v~D~~t~--------~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~ 160 (373)
T d2madh_ 89 RIAKGKRTDYVEVFDPVTF--------LPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVVQGGSSD 160 (373)
T ss_pred cccccccceEEEEEECCCC--------cEEEEEecCCcceeEeccCCCcEEEEeCCCcEEEEEEcCCCceEEeeccCCeE
Confidence 4578999999987 5555665555443 4578888887 33 445567888888755321
Q ss_pred eeecCCCceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcCCCCEEE--EeCCCcEEEEEccCCcEEEEeecCC
Q 003171 275 ALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVW--SAGFLSFALWDARTRELLKVFNIDG 352 (842)
Q Consensus 275 ~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~--s~s~~tI~lWD~~tg~~l~~l~~~~ 352 (842)
.-. .....++++++++..++ ...++++.+||..+++.........
T Consensus 161 ~~~---------------------------------~~~~~~~~~s~~g~~~~v~~~~dg~~~~~~~~~~~~~~~~~~~~ 207 (373)
T d2madh_ 161 DQL---------------------------------LSSPTCYHIHPGAPSTFYLLCAQGGLAKTDHAGGAAGAGLVGAM 207 (373)
T ss_pred EEE---------------------------------eccceeEEEecCCCcEEEEEcCCCeEEEEEcCCceeeEEEeeec
Confidence 100 01122333444444332 2346789999999988876654321
Q ss_pred ceE------eeeecccCCCccc-ccceEEEEEecCCCCccceeeeEeecCcceEEecCCcEEEEeec-Cc---cc-cCCC
Q 003171 353 QIE------NRVDMSLLPDFAM-EDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAK-GG---FG-DDNR 420 (842)
Q Consensus 353 ~~~------~~~~~s~~~~~~~-~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~v~~v~~~-g~---~~-~~~~ 420 (842)
... ............. ..+.++.++.... ... ... ..+............. +. .. ....
T Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~----~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 278 (373)
T d2madh_ 208 LTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISA-AGA----TNK----APIDALSGGRKADTWRPGGWQQVAYLKSS 278 (373)
T ss_pred cccCccceeeeEEECCCceEEEecCCceEEEEEcCC-CeE----EEE----EeeccccCcEEeeeeccCcceeeEEecCC
Confidence 100 0000000000000 0000001111000 000 000 0000000000000000 00 00 0001
Q ss_pred ceEEEEECCCCcEEEEeCCCeEEEEcC-CCCeeeeeecCCccEEEEE--ecCCE--EEEEecCcEEEEEeCC-Ccccccc
Q 003171 421 RTEALTTSIDGMIWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQCLC--TFGSQ--IWVGYMNGIVQVLDLE-GNLLGGW 494 (842)
Q Consensus 421 ~v~al~~s~dg~l~Sgs~DgtIrlWD~-~g~~l~~l~~H~~~V~sls--~dG~~--LasGs~DgtIrlWD~~-g~~i~~l 494 (842)
....+...++..+++...+++|.+||. +++.+..+. +...+.+++ +||++ +++++.|++|+|||++ |+.++++
T Consensus 279 ~~~~~~~~~~~~~~~~~~~~~v~~~d~~t~~~~~~~~-~~~~~~~~a~spDG~~~l~vt~~~d~~v~v~D~~tg~~~~~~ 357 (373)
T d2madh_ 279 DGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQIS-LGHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQST 357 (373)
T ss_pred CeEEEecCCCceEEeecCCCeEEEEECCCCcEEEEec-CCCCeeEEEECCCCCEEEEEEeCCCCeEEEEECCCCCEEEEE
Confidence 111122222333566777889999999 788888775 455677664 58984 4578889999999997 8999999
Q ss_pred cccccCEEEEEe
Q 003171 495 VAHSSPVIKMAV 506 (842)
Q Consensus 495 ~gH~~~V~sla~ 506 (842)
.+|......|+.
T Consensus 358 ~~~g~~P~~l~~ 369 (373)
T d2madh_ 358 VELGSGPQVLSV 369 (373)
T ss_pred CCCCCCCcEEEE
Confidence 888776666664
|
| >d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Putative isomerase YbhE family: Putative isomerase YbhE domain: Putative isomerase YbhE species: Escherichia coli [TaxId: 562]
Probab=99.42 E-value=1e-11 Score=130.29 Aligned_cols=143 Identities=14% Similarity=0.221 Sum_probs=89.1
Q ss_pred ecCCCEEEEeCCCCccccccccccccCCCCCCCCCCeeeeeecCCCeEEEEEcCCCCEEEEEe-CCCcEEEEECCCCccC
Q 003171 148 GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGH-RDGRIMCWKMNARLLD 226 (842)
Q Consensus 148 ~~D~~vrvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~V~~la~dpdg~~LaSGs-~DGtIrlWdl~~g~~~ 226 (842)
+.|++|+|||+........ . ......+.|.+|+|+|||++|++++ .|++|++|++...
T Consensus 11 ~~~~~I~v~~~~~~~~l~~-----------------~-~~~~~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~--- 69 (333)
T d1ri6a_ 11 PESQQIHVWNLNHEGALTL-----------------T-QVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPD--- 69 (333)
T ss_dssp GGGTEEEEEEECTTSCEEE-----------------E-EEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTT---
T ss_pred CCCCcEEEEEEcCCCCeEE-----------------E-EEEcCCCCEeEEEEeCCCCEEEEEECCCCeEEEEEEeCC---
Confidence 3688999999864321110 1 1111256789999999999986555 5899999999875
Q ss_pred CCCCcceeEEec---ccCCcEEEEEEecCCC-EEEee-CCCcEEEEeCCCccceeecCCCceeeeEEEEeeceeecccce
Q 003171 227 SDDGFGEVLSWQ---AHRGPVLSLCISSYGD-LWSGS-EGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHL 301 (842)
Q Consensus 227 ~~~~~~~~~~l~---gH~~~V~slafs~dG~-L~SgS-~DgtIrvWd~~t~~~~l~~~~~~~~~~~l~~~~s~~~l~~~~ 301 (842)
....++. .+...+..|+|+|||+ |++++ .+++|++|+........... ...+
T Consensus 70 -----~~~~~~~~~~~~~~~p~~l~~spDg~~l~v~~~~~~~v~~~~~~~~~~~~~~~-----------------~~~~- 126 (333)
T d1ri6a_ 70 -----DGALTFAAESALPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVD-----------------VVEG- 126 (333)
T ss_dssp -----TCCEEEEEEEECSSCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEE-----------------EECC-
T ss_pred -----CCcEEEeeecccCCCceEEEEcCCCCEEeecccCCCceeeeccccccceeccc-----------------ccCC-
Confidence 2222222 3345577899999998 66665 57899999875432111000 0000
Q ss_pred eccceeeeecCCEEEEEEcCCCCEEEEeCC--CcEEEEEccCCc
Q 003171 302 SVNGFSSILTSDIKNLLSDHSRAKVWSAGF--LSFALWDARTRE 343 (842)
Q Consensus 302 ~~~~~~~~~s~~v~~las~~~~~~v~s~s~--~tI~lWD~~tg~ 343 (842)
...+..+.+++++..++.+.. ..|.+|+..+..
T Consensus 127 ---------~~~~~~v~~s~d~~~~~~~~~~~~~i~~~~~~~~~ 161 (333)
T d1ri6a_ 127 ---------LDGCHSANISPDNRTLWVPALKQDRICLFTVSDDG 161 (333)
T ss_dssp ---------CTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTS
T ss_pred ---------CccceEEEeeecceeeeccccccceeeEEEeccCC
Confidence 122334556677776666553 468899987654
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.33 E-value=3.8e-11 Score=127.35 Aligned_cols=103 Identities=7% Similarity=-0.056 Sum_probs=70.1
Q ss_pred cCCEEEEe------cCCCEEEEeCCCCccccccccccccCCCCCCCCCCeeeeeecCCCeEEEEEcCCCCEEEEE-----
Q 003171 141 TEEQLWAG------GENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSG----- 209 (842)
Q Consensus 141 ~~~~l~~~------~D~~vrvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~V~~la~dpdg~~LaSG----- 209 (842)
+++++|+. .+++|.|||.++..... .+. .+.+..++|+|||+.|+..
T Consensus 12 dg~~~~v~~~~~~~~~~~v~v~D~~tg~~~~---------------------~~~-~g~~~~~a~SpDg~~l~v~~~~~~ 69 (355)
T d2bbkh_ 12 DARRVYVNDPAHFAAVTQQFVIDGEAGRVIG---------------------MID-GGFLPNPVVADDGSFIAHASTVFS 69 (355)
T ss_dssp CTTEEEEEECGGGCSSEEEEEEETTTTEEEE---------------------EEE-ECSSCEEEECTTSSCEEEEEEEEE
T ss_pred CCCEEEEEecccCCCcCeEEEEECCCCcEEE---------------------EEE-CCCCCceEEcCCCCEEEEEeCCCc
Confidence 66677763 35579999998754332 122 2233368999999988864
Q ss_pred -----eCCCcEEEEECCCCccCCCCCcceeEEecccC-------CcEEEEEEecCCC-EE--EeeCCCcEEEEeCCCcc
Q 003171 210 -----HRDGRIMCWKMNARLLDSDDGFGEVLSWQAHR-------GPVLSLCISSYGD-LW--SGSEGGGIKIWPWEAIE 273 (842)
Q Consensus 210 -----s~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~-------~~V~slafs~dG~-L~--SgS~DgtIrvWd~~t~~ 273 (842)
..|+.|++||+.++ +....+..|. .....++|+|+|+ ++ +.+.+..+++|+..+++
T Consensus 70 ~~~~g~~d~~v~v~D~~t~--------~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~ 140 (355)
T d2bbkh_ 70 RIARGERTDYVEVFDPVTL--------LPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKA 140 (355)
T ss_dssp ETTEEEEEEEEEEECTTTC--------CEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTE
T ss_pred cccccCCCCEEEEEECCCC--------CEEEEEecCCcceeecCCCCceEEEecCCCeeEEecCCCCceeeeeecCCCc
Confidence 45889999999987 4444443322 2235679999998 44 44667899999997754
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Probab=99.31 E-value=2.3e-11 Score=127.65 Aligned_cols=80 Identities=11% Similarity=0.030 Sum_probs=59.8
Q ss_pred CCCceEEEEECCCCc-EEEEeCCCeEEEEcC-CCCeeeeeecCCccEEEE--EecCCEEEEEecCcEEEEEeCC-Ccccc
Q 003171 418 DNRRTEALTTSIDGM-IWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQCL--CTFGSQIWVGYMNGIVQVLDLE-GNLLG 492 (842)
Q Consensus 418 ~~~~v~al~~s~dg~-l~Sgs~DgtIrlWD~-~g~~l~~l~~H~~~V~sl--s~dG~~LasGs~DgtIrlWD~~-g~~i~ 492 (842)
+...+..+.+++++. ++++. ++.|++||. ++++++.+. +...+.++ ++||++|++|+.|++|++||++ ++++.
T Consensus 250 ~~~~~~~~~~~~~~~~~~~~~-~~~v~v~d~~~~~~~~~~~-~~~~~~~va~s~DG~~l~v~~~d~~v~v~D~~t~~~i~ 327 (346)
T d1jmxb_ 250 LTELYFTGLRSPKDPNQIYGV-LNRLAKYDLKQRKLIKAAN-LDHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKVK 327 (346)
T ss_dssp CSSCEEEEEECSSCTTEEEEE-ESEEEEEETTTTEEEEEEE-CSSCCCEEEECSSSSCEEEESBSSEEEEEETTTTEEEE
T ss_pred ccceeEEEEEeCCCCEEEEec-CCeEEEEECCCCcEEEEEc-CCCCEEEEEEcCCCCEEEEEeCCCcEEEEECccCCEEE
Confidence 444556666766655 66665 457999999 788887775 34456666 4689999999999999999997 78887
Q ss_pred ccccccc
Q 003171 493 GWVAHSS 499 (842)
Q Consensus 493 ~l~gH~~ 499 (842)
++..+.+
T Consensus 328 ~i~~p~g 334 (346)
T d1jmxb_ 328 NIKLPGG 334 (346)
T ss_dssp EEECSSS
T ss_pred EEECCCC
Confidence 7775544
|
| >d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Putative isomerase YbhE family: Putative isomerase YbhE domain: Putative isomerase YbhE species: Escherichia coli [TaxId: 562]
Probab=99.31 E-value=8.2e-11 Score=123.17 Aligned_cols=271 Identities=10% Similarity=0.089 Sum_probs=144.7
Q ss_pred EEEEEeCCCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCCC-EE-EeeCCCcEEEEeCCCccceeecCCCc
Q 003171 205 VVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LW-SGSEGGGIKIWPWEAIEKALSLKPEE 282 (842)
Q Consensus 205 ~LaSGs~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~-SgS~DgtIrvWd~~t~~~~l~~~~~~ 282 (842)
.+++++.|++|++|+++... . ..+.....|.+.|.+|+|||||+ |+ +++.|++|++|++......++...
T Consensus 6 v~v~~~~~~~I~v~~~~~~~-----~-l~~~~~~~~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~-- 77 (333)
T d1ri6a_ 6 VYIASPESQQIHVWNLNHEG-----A-LTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAA-- 77 (333)
T ss_dssp EEEEEGGGTEEEEEEECTTS-----C-EEEEEEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEE--
T ss_pred EEEECCCCCcEEEEEEcCCC-----C-eEEEEEEcCCCCEeEEEEeCCCCEEEEEECCCCeEEEEEEeCCCCcEEEee--
Confidence 45788899999999987641 0 12333457889999999999998 64 566799999999976433222110
Q ss_pred eeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcCCCCEEEEeC--CCcEEEEEccCCcEEEEeec--CCceEeee
Q 003171 283 RHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG--FLSFALWDARTRELLKVFNI--DGQIENRV 358 (842)
Q Consensus 283 ~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s--~~tI~lWD~~tg~~l~~l~~--~~~~~~~~ 358 (842)
+.. .......+++++++..|+++. +.++.+|+............ +......+
T Consensus 78 -----------------~~~-------~~~~p~~l~~spDg~~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v 133 (333)
T d1ri6a_ 78 -----------------ESA-------LPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSA 133 (333)
T ss_dssp -----------------EEE-------CSSCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCC
T ss_pred -----------------ecc-------cCCCceEEEEcCCCCEEeecccCCCceeeeccccccceecccccCCCccceEE
Confidence 000 012344578888888888775 35789998877655433221 11111111
Q ss_pred ecccCCCcccccceEEEEEecCCCCccceeeeEeecCcceEEecCCc-EEEEeecCccccCCCceEEEEECCCCcE--EE
Q 003171 359 DMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADA-VRRVAAKGGFGDDNRRTEALTTSIDGMI--WT 435 (842)
Q Consensus 359 ~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~~~-v~~v~~~g~~~~~~~~v~al~~s~dg~l--~S 435 (842)
.+++.....+ .... ... .+..+. ..... ...................+++++++.. ++
T Consensus 134 ~~s~d~~~~~--------~~~~-~~~---~i~~~~-------~~~~~~~~~~~~~~~~~~~g~~p~~i~~~~~~~~~~~~ 194 (333)
T d1ri6a_ 134 NISPDNRTLW--------VPAL-KQD---RICLFT-------VSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCV 194 (333)
T ss_dssp EECTTSSEEE--------EEEG-GGT---EEEEEE-------ECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEE
T ss_pred Eeeecceeee--------cccc-ccc---eeeEEE-------eccCCcceeeeceeeeeecCCCccEEEEeccceeEEee
Confidence 2222111110 0000 000 000000 00000 0000000001112334567899999873 34
Q ss_pred EeCCCeEEEEcCC--CCee---eeeec------CCccEE--EEEecCCEEEEEe-cCcEEEEEeCC-Ccccccc---ccc
Q 003171 436 GGANGLLLQWDPN--GNRL---QDFQY------LPFAVQ--CLCTFGSQIWVGY-MNGIVQVLDLE-GNLLGGW---VAH 497 (842)
Q Consensus 436 gs~DgtIrlWD~~--g~~l---~~l~~------H~~~V~--sls~dG~~LasGs-~DgtIrlWD~~-g~~i~~l---~gH 497 (842)
....+...+|+.. ...+ .++.. ...... .+++||++++... .++++.+|++. ....... ..+
T Consensus 195 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (333)
T d1ri6a_ 195 NELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPT 274 (333)
T ss_dssp ETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEEC
T ss_pred ccccCceEEEeecccccceeeeeeeeeeecCCCccccceeEEEecccCceeeecccCCeEEEEEEcCCCCEEEEEEEeCC
Confidence 4456677788763 2211 22211 122333 3456888666554 57899999975 2222222 223
Q ss_pred ccCEEEEE--eCCCEEEEE-cCCCCeeecccc
Q 003171 498 SSPVIKMA--VGAGYIFTL-ANHGGIRGWNVT 526 (842)
Q Consensus 498 ~~~V~sla--~dg~~l~S~-S~DgtIrvWd~~ 526 (842)
...+.+++ +||++|+.+ +.+++|++|++.
T Consensus 275 ~~~p~~~a~spDGk~l~va~~~~~~v~v~~id 306 (333)
T d1ri6a_ 275 ETQPRGFNVDHSGKYLIAAGQKSHHISVYEIV 306 (333)
T ss_dssp SSSCCCEEECTTSSEEEEECTTTCEEEEEEEE
T ss_pred CCCeeEEEEeCCCCEEEEEECCCCeEEEEEEE
Confidence 34455555 689987755 567899999763
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.10 E-value=7.4e-10 Score=119.25 Aligned_cols=280 Identities=9% Similarity=-0.097 Sum_probs=146.2
Q ss_pred CCeEEEEEcCCCCEE---EEEeCCCcEE--EEECCCCccCCCCCcceeEEecccCCcEEEEEEecCCC-EEEe-------
Q 003171 192 SSVMCMVGDEASGVV---WSGHRDGRIM--CWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSG------- 258 (842)
Q Consensus 192 ~~V~~la~dpdg~~L---aSGs~DGtIr--lWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~Sg------- 258 (842)
++...++..++++.. ++.+.+|+.+ +||..++ +.+.+..+|..+ .++|+|||+ |+..
T Consensus 20 g~~~~~a~~~~~~~~~v~~~~~~~g~~~~~~~d~~~~--------~~~~~~~~~~~~--~~a~spDg~~i~~~~~~~~~~ 89 (368)
T d1mdah_ 20 GSSCDHGPGAISRRSHITLPAYFAGTTENWVSCAGCG--------VTLGHSLGAFLS--LAVAGHSGSDFALASTSFARS 89 (368)
T ss_dssp CCCBCCCCCCCTTEEEEEECTTTCSSEEEEEEETTTT--------EEEEEEEECTTC--EEEECTTSSCEEEEEEEETTT
T ss_pred CCccccccCCCCcceeEEeeccCCCcceEEEEeCCCC--------cEEEEEeCCCCC--cceECCCCCEEEEEcccCccc
Confidence 344445566777753 3345667655 5587776 566667777665 589999998 6543
Q ss_pred ---eCCCcEEEEeCCCccceeecCCCceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcCCCCEEEEeC--CCc
Q 003171 259 ---SEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG--FLS 333 (842)
Q Consensus 259 ---S~DgtIrvWd~~t~~~~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s--~~t 333 (842)
+.|++|++||..+++........... .... -.....+++++++..++.+. +++
T Consensus 90 ~~g~~d~~v~v~D~~t~~~~~~i~~p~~~----------------~~~~------g~~p~~~a~SpDGk~l~va~~~~~~ 147 (368)
T d1mdah_ 90 AKGKRTDYVEVFDPVTFLPIADIELPDAP----------------RFSV------GPRVHIIGNCASSACLLFFLFGSSA 147 (368)
T ss_dssp TSSSEEEEEEEECTTTCCEEEEEEETTSC----------------SCCB------SCCTTSEEECTTSSCEEEEECSSSC
T ss_pred cccccCCeEEEEECCCCcEeeeecCCccc----------------eecc------cCCccceEECCCCCEEEEEeCCCCe
Confidence 45889999999875433221100000 0000 00111356677887776554 478
Q ss_pred EEEEEccCCcEEEEeecCCceEeeeecccCCCcccccceEEEEEecCCCCccceeeeEeecCcceEEecC-CcEEEE-ee
Q 003171 334 FALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAA-DAVRRV-AA 411 (842)
Q Consensus 334 I~lWD~~tg~~l~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~g~~-~~v~~v-~~ 411 (842)
+.+||+.+++++..+..+........... . .+.+..++....+... .+.... ..
T Consensus 148 v~~~d~~~~~~~~~~~~~~~~~~~~~~~~----~--------------------~v~~~~Dg~~~~~~~~~~~~~~~~~~ 203 (368)
T d1mdah_ 148 AAGLSVPGASDDQLTKSASCFHIHPGAAA----T--------------------HYLGSCPASLAASDLAAAPAAAGIVG 203 (368)
T ss_dssp EEEEEETTTEEEEEEECSSCCCCEEEETT----E--------------------EECCCCTTSCEEEECCSSCCCCEECC
T ss_pred EEEEECCCCcEeEEeeccCcceEccCCCc----e--------------------EEEEcCCCCEEEEEecCCceeeeeee
Confidence 99999999999887754432110000000 0 0001111111111100 000000 00
Q ss_pred cCccccCCCceEEEEECCCCcEEEEeCCCeEEEEcCCCCeee---e------------eecCCccEEEEEecCCEEEEEe
Q 003171 412 KGGFGDDNRRTEALTTSIDGMIWTGGANGLLLQWDPNGNRLQ---D------------FQYLPFAVQCLCTFGSQIWVGY 476 (842)
Q Consensus 412 ~g~~~~~~~~v~al~~s~dg~l~Sgs~DgtIrlWD~~g~~l~---~------------l~~H~~~V~sls~dG~~LasGs 476 (842)
...+..+...+....+.+++.++.. .++.+.+++..+..+. . +..+......+++++..++...
T Consensus 204 ~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~v~~ 282 (368)
T d1mdah_ 204 AQCTGAQNCSSQAAQANYPGMLVWA-VASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILT 282 (368)
T ss_dssp CCSCTTSCBCSCCEEETTTTEEEEC-BSSCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEE
T ss_pred cccccccccceeecccccCcEEEEe-cCCCEEEEeecCCceEEEeecccccceeeeeeecCCCceeEEEcCCCCEEEEEe
Confidence 0011122223334455566653322 2333444544221111 1 1122233456677888776653
Q ss_pred cC---------cEEEEEeCC-CcccccccccccCEEEEE--eCCCE--EEEEcCCCCeeeccccCCC
Q 003171 477 MN---------GIVQVLDLE-GNLLGGWVAHSSPVIKMA--VGAGY--IFTLANHGGIRGWNVTSPG 529 (842)
Q Consensus 477 ~D---------gtIrlWD~~-g~~i~~l~gH~~~V~sla--~dg~~--l~S~S~DgtIrvWd~~~~~ 529 (842)
.+ ..|++||.. ++.+.++..+ ..+.+++ +||+. +++.+.|++|++||..+..
T Consensus 283 ~~~~~~~~~~~~~v~v~D~~t~~~~~~~~~~-~~~~~~a~spDG~~~ly~s~~~~~~v~v~D~~tgk 348 (368)
T d1mdah_ 283 VEHSRSCLAAAENTSSVTASVGQTSGPISNG-HDSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQ 348 (368)
T ss_dssp EECSSCTTSCEEEEEEEESSSCCEEECCEEE-EEECEEEECCSSSCEEEEEETTTTEEEEEESSSCE
T ss_pred cCCCceeecCCceEEEEECCCCcEeEEecCC-CceeEEEECCCCCEEEEEEeCCCCeEEEEECCCCC
Confidence 22 469999987 6777777543 4577666 58863 4588899999999987643
|
| >d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl peptidase IV/CD26, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=98.96 E-value=1.1e-08 Score=113.70 Aligned_cols=107 Identities=12% Similarity=0.008 Sum_probs=78.8
Q ss_pred CCEEEEecCCCEEEEeCCCCccccccccccccCCCCCCCCCCeeeeeecCCCeEEEEEcCCCCEEEEEe---------CC
Q 003171 142 EEQLWAGGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGH---------RD 212 (842)
Q Consensus 142 ~~~l~~~~D~~vrvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~V~~la~dpdg~~LaSGs---------~D 212 (842)
+++++...|+++.+||+.+...... .....|.. + ...|.++.|||||+.|+.++ .+
T Consensus 27 d~~~~~~~~~~~~~~~~~t~~~~~~------------~~~~~~~~--~-~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~ 91 (470)
T d2bgra1 27 DHEYLYKQENNILVFNAEYGNSSVF------------LENSTFDE--F-GHSINDYSISPDGQFILLEYNYVKQWRHSYT 91 (470)
T ss_dssp SSEEEEESSSCEEEEETTTCCEEEE------------ECTTTTTT--S-SSCCCEEEECTTSSEEEEEEEEEECSSSCEE
T ss_pred CCEEEEEcCCcEEEEECCCCCEEEE------------Echhhhhh--c-cCccceeEECCCCCEEEEEECCcceeeeccC
Confidence 3455556788999999987643211 00011111 1 45789999999999999885 35
Q ss_pred CcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCCC-EEEeeCCCcEEEEeCCCcc
Q 003171 213 GRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIE 273 (842)
Q Consensus 213 GtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~~t~~ 273 (842)
+.+.+||+.++ ....+..|.+.+..+.|||||+ |+. ..|+.+.+|+..+++
T Consensus 92 ~~~~l~d~~~~---------~~~~l~~~~~~~~~~~~SPDG~~ia~-~~~~~l~~~~~~~g~ 143 (470)
T d2bgra1 92 ASYDIYDLNKR---------QLITEERIPNNTQWVTWSPVGHKLAY-VWNNDIYVKIEPNLP 143 (470)
T ss_dssp EEEEEEETTTT---------EECCSSCCCTTEEEEEECSSTTCEEE-EETTEEEEESSTTSC
T ss_pred ceEEEEECCCC---------cccccccCCccccccccccCcceeeE-eecccceEEECCCCc
Confidence 78899999985 4667889999999999999998 555 457889999988754
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=98.87 E-value=1.7e-08 Score=108.19 Aligned_cols=70 Identities=6% Similarity=-0.126 Sum_probs=52.3
Q ss_pred EEEEcCCCCEEEEEe----------CCCcEEEEECCCCccCCCCCcceeEEecccCC-------cEEEEEEecCCC-EEE
Q 003171 196 CMVGDEASGVVWSGH----------RDGRIMCWKMNARLLDSDDGFGEVLSWQAHRG-------PVLSLCISSYGD-LWS 257 (842)
Q Consensus 196 ~la~dpdg~~LaSGs----------~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~-------~V~slafs~dG~-L~S 257 (842)
.++++|||+.|+..+ .|++|++||..++ +....+..|.. ....++|||||+ |+.
T Consensus 69 ~~a~spDg~~i~~~~~~~~~~~~g~~d~~v~v~D~~t~--------~~~~~i~~p~~~~~~~g~~p~~~a~SpDGk~l~v 140 (368)
T d1mdah_ 69 LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTF--------LPIADIELPDAPRFSVGPRVHIIGNCASSACLLF 140 (368)
T ss_dssp EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTC--------CEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEE
T ss_pred cceECCCCCEEEEEcccCccccccccCCeEEEEECCCC--------cEeeeecCCccceecccCCccceEECCCCCEEEE
Confidence 478999999998754 4788999999987 55555543322 123689999998 665
Q ss_pred ee-CCCcEEEEeCCCcc
Q 003171 258 GS-EGGGIKIWPWEAIE 273 (842)
Q Consensus 258 gS-~DgtIrvWd~~t~~ 273 (842)
++ .+++|.+||+.+++
T Consensus 141 a~~~~~~v~~~d~~~~~ 157 (368)
T d1mdah_ 141 FLFGSSAAAGLSVPGAS 157 (368)
T ss_dssp EECSSSCEEEEEETTTE
T ss_pred EeCCCCeEEEEECCCCc
Confidence 54 67999999997754
|
| >d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Pseudomonas nautica [TaxId: 2743]
Probab=98.43 E-value=4.8e-07 Score=99.35 Aligned_cols=100 Identities=14% Similarity=0.086 Sum_probs=63.6
Q ss_pred EECCCCcEEEEeCCCeEEEEcC-CCCeeeeeecCCccE-EEEEecCCEEEE-EecCcEEEEEeCCC-------c--cccc
Q 003171 426 TTSIDGMIWTGGANGLLLQWDP-NGNRLQDFQYLPFAV-QCLCTFGSQIWV-GYMNGIVQVLDLEG-------N--LLGG 493 (842)
Q Consensus 426 ~~s~dg~l~Sgs~DgtIrlWD~-~g~~l~~l~~H~~~V-~sls~dG~~Las-Gs~DgtIrlWD~~g-------~--~i~~ 493 (842)
++++||+....+.++.+.+++. ..+.+..+..+..+- ..+++||+++++ |..+++|.|||++. + ...+
T Consensus 224 ~~~~dGk~~~v~~~~v~vvd~~~~~~v~~~IPvgksPhGv~vSPDGkyl~~~~~~~~tvsv~d~~k~~~~~~~~~~~~~~ 303 (441)
T d1qnia2 224 AAVKAGNFKTIGDSKVPVVDGRGESEFTRYIPVPKNPHGLNTSPDGKYFIANGKLSPTVSVIAIDKLDDLFEDKIELRDT 303 (441)
T ss_dssp HHHHTTCCBCCTTCCCCEEECSSSCSSEEEECCBSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHTTTSSCGGGG
T ss_pred EEecCCCEEEeCCCCcEEEEcccCCceEEEEeCCCCccCceECCCCCEEEEeCCcCCcEEEEEeehhhhHhhccCCcceE
Confidence 3567787554456788888887 456666666544432 246789998765 56799999999751 1 1223
Q ss_pred ccccccC---EEEEEeCC--CEEEEEcCCCCeeeccc
Q 003171 494 WVAHSSP---VIKMAVGA--GYIFTLANHGGIRGWNV 525 (842)
Q Consensus 494 l~gH~~~---V~sla~dg--~~l~S~S~DgtIrvWd~ 525 (842)
+.++... ....++|+ ....|...|..|..|++
T Consensus 304 ~~~~~~~glgplh~~fd~~g~~yts~~~ds~v~kw~~ 340 (441)
T d1qnia2 304 IVAEPELGLGPLHTTFDGRGNAYTTLFIDSQVCKWNI 340 (441)
T ss_dssp EEECCBCCSCEEEEEECSSSEEEEEETTTTEEEEEEH
T ss_pred EEeecccccCcccceecCCceEEEcccccceEEEecc
Confidence 3333322 12224554 45668899999999996
|
| >d2ddra1 d.151.1.3 (A:7-305) Sphingomyelin phosphodiesterase C {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: DNase I-like superfamily: DNase I-like family: Sphingomyelin phosphodiesterase-like domain: Sphingomyelin phosphodiesterase C species: Bacillus cereus [TaxId: 1396]
Probab=98.39 E-value=4.8e-07 Score=92.93 Aligned_cols=71 Identities=18% Similarity=0.293 Sum_probs=49.9
Q ss_pred cccCCCCeeEEEEEEeCeEEEEEeecCcCCcc------hHHHHHHHHHHHHHhcCcCCCCCccchhccCCCceeeecccC
Q 003171 672 RAIGNKGAVGLRVRVYDRIMCFVNCHFAAHLE------AVNRRNADFDHVYRTMTFCRPSNLCSAAAAGASSVVQMLRST 745 (842)
Q Consensus 672 ~~~gnKG~v~i~~~i~~~~~~Fv~~HLaa~~~------~~~~Rn~~~~~I~~~l~f~~~~~~~~~~~~~~~~~~~~~~~~ 745 (842)
....++|++.+++.+.+..|+++|+||.++.. ....|..+++.+...+.=.
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~~v~~~Hl~~~~~~~~~~~~~~~r~~q~~~~~~~~~~~----------------------- 176 (299)
T d2ddra1 120 DNLSNKGFVYTKIKKNDRFVHVIGTHLQAEDSMCGKTSPASVRTNQLKEIQDFIKNK----------------------- 176 (299)
T ss_dssp --CCCCEEEEEEEEETTEEEEEEEEECCCC-------CHHHHHHHHHHHHHHHHHHH-----------------------
T ss_pred ccccceeEEEEEEecCCeEEEEEEccccCCCCccchhhhHHHHHHHHHHHhhhhhhh-----------------------
Confidence 34678999999999999999999999998843 2344667777766544100
Q ss_pred CCCCCCccCCCCCcCcccEEEEeccceeeecC
Q 003171 746 NPLSGLTVEGVPELSEADMVIFLGDFNYRLDG 777 (842)
Q Consensus 746 ~~~~~~~~~~~~~~~~~d~vf~~GDlNyRi~~ 777 (842)
.+...+.||++||||.+-..
T Consensus 177 ------------~~~~~~~vi~~GDfN~~~~~ 196 (299)
T d2ddra1 177 ------------NIPNNEYVLIGGDMNVNKIN 196 (299)
T ss_dssp ------------TCCTTSCEEEEEECCCCCTT
T ss_pred ------------cccccceEEEEecCCCCccc
Confidence 01234579999999998654
|
| >d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: All0351-like domain: Hypothetical protein All0351 homologue species: Nostoc punctiforme [TaxId: 272131]
Probab=98.37 E-value=8.5e-05 Score=76.78 Aligned_cols=69 Identities=17% Similarity=0.213 Sum_probs=54.8
Q ss_pred CeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCCCEE-EeeCCCcEEEEeCCC
Q 003171 193 SVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGDLW-SGSEGGGIKIWPWEA 271 (842)
Q Consensus 193 ~V~~la~dpdg~~LaSGs~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~L~-SgS~DgtIrvWd~~t 271 (842)
.+..++++|||+++++...+++|..|+.++. ...+..+.+.+.+++|++||+|+ +...++.+.+|+...
T Consensus 29 ~~e~iAv~pdG~l~vt~~~~~~I~~i~p~g~----------~~~~~~~~~~~~gla~~~dG~l~v~~~~~~~~~~~~~~~ 98 (302)
T d2p4oa1 29 FLENLASAPDGTIFVTNHEVGEIVSITPDGN----------QQIHATVEGKVSGLAFTSNGDLVATGWNADSIPVVSLVK 98 (302)
T ss_dssp CEEEEEECTTSCEEEEETTTTEEEEECTTCC----------EEEEEECSSEEEEEEECTTSCEEEEEECTTSCEEEEEEC
T ss_pred CcCCEEECCCCCEEEEeCCCCEEEEEeCCCC----------EEEEEcCCCCcceEEEcCCCCeEEEecCCceEEEEEecc
Confidence 5778999999999999999999988886653 23344556789999999999965 666778888887644
|
| >d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl peptidase IV/CD26, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=98.33 E-value=3.2e-05 Score=84.81 Aligned_cols=112 Identities=5% Similarity=0.007 Sum_probs=81.2
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeE-----EecccCCcEEEEEEecCCC-EEEee---------CC
Q 003171 197 MVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVL-----SWQAHRGPVLSLCISSYGD-LWSGS---------EG 261 (842)
Q Consensus 197 la~dpdg~~LaSGs~DGtIrlWdl~~g~~~~~~~~~~~~-----~l~gH~~~V~slafs~dG~-L~SgS---------~D 261 (842)
+.+.+++.+++. .|+.|.+||+.++ ++.. ++.+|...|.++.|||||+ |+.++ .+
T Consensus 22 ~~W~~d~~~~~~--~~~~~~~~~~~t~--------~~~~~~~~~~~~~~~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~ 91 (470)
T d2bgra1 22 LRWISDHEYLYK--QENNILVFNAEYG--------NSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYT 91 (470)
T ss_dssp CEECSSSEEEEE--SSSCEEEEETTTC--------CEEEEECTTTTTTSSSCCCEEEECTTSSEEEEEEEEEECSSSCEE
T ss_pred CEeCCCCEEEEE--cCCcEEEEECCCC--------CEEEEEchhhhhhccCccceeEECCCCCEEEEEECCcceeeeccC
Confidence 567788888765 5889999999997 3333 3456678999999999998 66654 35
Q ss_pred CcEEEEeCCCccceeecCCCceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcCCCCEEEEeCCCcEEEEEccC
Q 003171 262 GGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGFLSFALWDART 341 (842)
Q Consensus 262 gtIrvWd~~t~~~~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s~~tI~lWD~~t 341 (842)
+.+.|||+++++. ..+.. + ...+....++++|.+|+...+..+.+|+..+
T Consensus 92 ~~~~l~d~~~~~~-~~l~~-------------------~----------~~~~~~~~~SPDG~~ia~~~~~~l~~~~~~~ 141 (470)
T d2bgra1 92 ASYDIYDLNKRQL-ITEER-------------------I----------PNNTQWVTWSPVGHKLAYVWNNDIYVKIEPN 141 (470)
T ss_dssp EEEEEEETTTTEE-CCSSC-------------------C----------CTTEEEEEECSSTTCEEEEETTEEEEESSTT
T ss_pred ceEEEEECCCCcc-ccccc-------------------C----------CccccccccccCcceeeEeecccceEEECCC
Confidence 6788999977531 11111 1 2345567778888888888888999999999
Q ss_pred CcEEEEe
Q 003171 342 RELLKVF 348 (842)
Q Consensus 342 g~~l~~l 348 (842)
++.++..
T Consensus 142 g~~~~~t 148 (470)
T d2bgra1 142 LPSYRIT 148 (470)
T ss_dssp SCCEECC
T ss_pred Cceeeee
Confidence 9876543
|
| >d1zwxa1 d.151.1.3 (A:41-333) Sphingomyelin phosphodiesterase C {Listeria ivanovii [TaxId: 1638]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: DNase I-like superfamily: DNase I-like family: Sphingomyelin phosphodiesterase-like domain: Sphingomyelin phosphodiesterase C species: Listeria ivanovii [TaxId: 1638]
Probab=98.32 E-value=6.7e-07 Score=91.49 Aligned_cols=48 Identities=13% Similarity=0.154 Sum_probs=36.5
Q ss_pred CcccCCCCeeEEEEEEeCeEEEEEeecCcCCcc------hHHHHHHHHHHHHHh
Q 003171 671 GRAIGNKGAVGLRVRVYDRIMCFVNCHFAAHLE------AVNRRNADFDHVYRT 718 (842)
Q Consensus 671 ~~~~gnKG~v~i~~~i~~~~~~Fv~~HLaa~~~------~~~~Rn~~~~~I~~~ 718 (842)
.....+||.+.+++.+.+..++|+|+||.++.. ....|..+++.+...
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~v~~~Hl~~~~~~~~~~~~~~~r~~~~~~~~~~ 172 (293)
T d1zwxa1 119 ADRLSNKGFAYVKIMKNGKPYHIIGTHTQADDSLISKDTSRAIRAEQMQEIQTF 172 (293)
T ss_dssp GGGGBCCEEEEEEEEETTEEEEEEEEECCCCCTTSCHHHHHHHHHHHHHHHHHH
T ss_pred ccccccceEEEEEEecCCceEEEEEeeeeccCCccchhHHHHHHHHHHHHhhhh
Confidence 345678999999999999999999999988743 334466666666554
|
| >d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Pseudomonas nautica [TaxId: 2743]
Probab=98.28 E-value=3.6e-07 Score=100.45 Aligned_cols=54 Identities=6% Similarity=0.012 Sum_probs=40.6
Q ss_pred CeEEEEEcCCCCEEEEEe-CCCcEEEEECCCCccCCCCCcceeEEe-cccCCcEEEEEEecCCC
Q 003171 193 SVMCMVGDEASGVVWSGH-RDGRIMCWKMNARLLDSDDGFGEVLSW-QAHRGPVLSLCISSYGD 254 (842)
Q Consensus 193 ~V~~la~dpdg~~LaSGs-~DGtIrlWdl~~g~~~~~~~~~~~~~l-~gH~~~V~slafs~dG~ 254 (842)
...+..++|||++|+... .+.+|.+||+.+. +....+ ..+...+..++|+|||+
T Consensus 73 ~~s~t~gtpDGr~lfV~d~~~~rVavIDl~t~--------k~~~ii~iP~g~gphgi~~spdg~ 128 (441)
T d1qnia2 73 HISMTDGRYDGKYLFINDKANTRVARIRLDIM--------KTDKITHIPNVQAIHGLRLQKVPK 128 (441)
T ss_dssp EEEEETTEEEEEEEEEEETTTTEEEEEETTTT--------EEEEEEECTTCCCEEEEEECCSSB
T ss_pred CcceecccCCCCEEEEEcCCCCEEEEEECCCC--------cEeeEEecCCCCCccceEEeccCC
Confidence 345555678999997665 6778999999986 443333 35677899999999997
|
| >d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Brain tumor cg10719-pa species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=98.24 E-value=0.0006 Score=69.33 Aligned_cols=108 Identities=8% Similarity=0.092 Sum_probs=74.2
Q ss_pred eEEEEECCCCcEE-EEeCCCeEEEEcCCCCeeeeee--cCCccEEEEEe--cCCEEEEEe-cCcEEEEEeCCCccccccc
Q 003171 422 TEALTTSIDGMIW-TGGANGLLLQWDPNGNRLQDFQ--YLPFAVQCLCT--FGSQIWVGY-MNGIVQVLDLEGNLLGGWV 495 (842)
Q Consensus 422 v~al~~s~dg~l~-Sgs~DgtIrlWD~~g~~l~~l~--~H~~~V~sls~--dG~~LasGs-~DgtIrlWD~~g~~i~~l~ 495 (842)
...++++++|.++ +....+.|+++|.+|+.+.++- ++......|+. +|+.+++-+ .++.|.+++.+|+++.++.
T Consensus 159 ~~~i~~d~~g~i~v~d~~~~~V~~~d~~G~~~~~~g~~g~~~~P~giavD~~G~i~Vad~~~~~~v~~f~~~G~~~~~~~ 238 (279)
T d1q7fa_ 159 PNGVVVNDKQEIFISDNRAHCVKVFNYEGQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQDGQLISALE 238 (279)
T ss_dssp EEEEEECSSSEEEEEEGGGTEEEEEETTCCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECTTSCEEEEEE
T ss_pred cceeeeccceeEEeeeccccceeeeecCCceeeeecccccccCCcccccccCCeEEEEECCCCcEEEEECCCCCEEEEEe
Confidence 4456778888865 4455678999999999888873 34445667766 466444433 3568999999999877765
Q ss_pred ccc--cCEEEEE--eCCCEEEEEcCCCCeeeccccCCCC
Q 003171 496 AHS--SPVIKMA--VGAGYIFTLANHGGIRGWNVTSPGP 530 (842)
Q Consensus 496 gH~--~~V~sla--~dg~~l~S~S~DgtIrvWd~~~~~~ 530 (842)
... ...+.|+ +||. |+.++.++.|++|......|
T Consensus 239 ~~~~~~~p~~vav~~dG~-l~V~~~n~~v~~fr~~~~~~ 276 (279)
T d1q7fa_ 239 SKVKHAQCFDVALMDDGS-VVLASKDYRLYIYRYVQLAP 276 (279)
T ss_dssp ESSCCSCEEEEEEETTTE-EEEEETTTEEEEEECSCCCC
T ss_pred CCCCCCCEeEEEEeCCCc-EEEEeCCCeEEEEEeeeecC
Confidence 432 3456666 4665 45556789999999766544
|
| >d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Lactonase Drp35 species: Staphylococcus aureus [TaxId: 1280]
Probab=97.72 E-value=0.0071 Score=62.41 Aligned_cols=59 Identities=12% Similarity=0.102 Sum_probs=45.0
Q ss_pred CeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCCCEEEee
Q 003171 193 SVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGDLWSGS 259 (842)
Q Consensus 193 ~V~~la~dpdg~~LaSGs~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~L~SgS 259 (842)
.+-.++||++|++.++-...++|..|+.+++ .....+.........|+|++||+|+.++
T Consensus 41 ~lEG~~~D~~G~Ly~~D~~~g~I~ri~p~g~--------~~~~~~~~~~~~p~gla~~~dG~l~va~ 99 (319)
T d2dg1a1 41 QLEGLNFDRQGQLFLLDVFEGNIFKINPETK--------EIKRPFVSHKANPAAIKIHKDGRLFVCY 99 (319)
T ss_dssp CEEEEEECTTSCEEEEETTTCEEEEECTTTC--------CEEEEEECSSSSEEEEEECTTSCEEEEE
T ss_pred CcEeCEECCCCCEEEEECCCCEEEEEECCCC--------eEEEEEeCCCCCeeEEEECCCCCEEEEe
Confidence 4567899999998888889999999998774 2233334445677899999999976554
|
| >d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: TolB, C-terminal domain family: TolB, C-terminal domain domain: TolB, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=97.60 E-value=0.012 Score=57.91 Aligned_cols=57 Identities=9% Similarity=-0.062 Sum_probs=41.4
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCC---cEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCCC-EE
Q 003171 191 VSSVMCMVGDEASGVVWSGHRDG---RIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LW 256 (842)
Q Consensus 191 ~~~V~~la~dpdg~~LaSGs~DG---tIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~ 256 (842)
...+..-+|||||+.||-..... .+.+.+..++ ....+..+.+.+....++|+|+ ++
T Consensus 38 ~~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~spdg~~i~ 98 (269)
T d2hqsa1 38 PQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANG---------AVRQVASFPRHNGAPAFSPDGSKLA 98 (269)
T ss_dssp SSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTC---------CEEEEECCSSCEEEEEECTTSSEEE
T ss_pred CCceeeeEECCCCCEEEEEEeeccCcceeeeecccC---------ceeEEeeeecccccceecCCCCeee
Confidence 56788899999999998655443 3445555553 3445566788899999999998 44
|
| >d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Lactonase Drp35 species: Staphylococcus aureus [TaxId: 1280]
Probab=97.57 E-value=0.037 Score=56.76 Aligned_cols=55 Identities=9% Similarity=0.085 Sum_probs=39.5
Q ss_pred EEEEECCCCcEEEEe-CCCeEEEEcCCCCeeeeee------cCCccEEEEEec--CCEEEEEec
Q 003171 423 EALTTSIDGMIWTGG-ANGLLLQWDPNGNRLQDFQ------YLPFAVQCLCTF--GSQIWVGYM 477 (842)
Q Consensus 423 ~al~~s~dg~l~Sgs-~DgtIrlWD~~g~~l~~l~------~H~~~V~sls~d--G~~LasGs~ 477 (842)
..++++.+|.||.+. .++.|.++|.+|+.+.++. ++...+.|+++. +..++..+.
T Consensus 231 dGl~vD~~G~l~Va~~~~g~V~~~~p~G~~l~~i~~P~~~~~~~~~~~~~~~~~~~~~~~~t~~ 294 (319)
T d2dg1a1 231 DSCCIDSDDNLYVAMYGQGRVLVFNKRGYPIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICSN 294 (319)
T ss_dssp EEEEEBTTCCEEEEEETTTEEEEECTTSCEEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEEE
T ss_pred eeeeEcCCCCEEEEEcCCCEEEEECCCCcEEEEEeCCCcCCCcCceeeeEEEeCCCCEEEEEcC
Confidence 357888999987665 5789999999999888775 344456777763 455655443
|
| >d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Regucalcin species: Agrobacterium tumefaciens [TaxId: 358]
Probab=97.48 E-value=0.038 Score=56.01 Aligned_cols=225 Identities=13% Similarity=0.096 Sum_probs=117.6
Q ss_pred EEEcC-CCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCCCEEEeeCCCcEEEEeCCCccce
Q 003171 197 MVGDE-ASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGDLWSGSEGGGIKIWPWEAIEKA 275 (842)
Q Consensus 197 la~dp-dg~~LaSGs~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~L~SgS~DgtIrvWd~~t~~~~ 275 (842)
..+++ ++.+.|+=-..++|..||..++. ...+. ....+.++++.++|.||.++.+ .|.++|..+++..
T Consensus 23 p~wd~~~~~l~wvDi~~~~I~r~d~~~g~---------~~~~~-~~~~~~~i~~~~dg~l~va~~~-gl~~~d~~tg~~~ 91 (295)
T d2ghsa1 23 PTFDPASGTAWWFNILERELHELHLASGR---------KTVHA-LPFMGSALAKISDSKQLIASDD-GLFLRDTATGVLT 91 (295)
T ss_dssp EEEETTTTEEEEEEGGGTEEEEEETTTTE---------EEEEE-CSSCEEEEEEEETTEEEEEETT-EEEEEETTTCCEE
T ss_pred CeEECCCCEEEEEECCCCEEEEEECCCCe---------EEEEE-CCCCcEEEEEecCCCEEEEEeC-ccEEeecccceee
Confidence 34665 56677776677899999998862 22221 2457889999999998877775 5888898775422
Q ss_pred eecCCCceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEcCCCCEEEEeCC------CcEEEEEccCCcEEEEee
Q 003171 276 LSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGF------LSFALWDARTRELLKVFN 349 (842)
Q Consensus 276 l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~~~~~~v~s~s~------~tI~lWD~~tg~~l~~l~ 349 (842)
.-...+.. . +......+..++.| .+|.++. ..-.+|.+..++....+.
T Consensus 92 ~l~~~~~~------------------~-------~~~~~nd~~vd~~G-~iw~~~~~~~~~~~~g~l~~~~~g~~~~~~~ 145 (295)
T d2ghsa1 92 LHAELESD------------------L-------PGNRSNDGRMHPSG-ALWIGTMGRKAETGAGSIYHVAKGKVTKLFA 145 (295)
T ss_dssp EEECSSTT------------------C-------TTEEEEEEEECTTS-CEEEEEEETTCCTTCEEEEEEETTEEEEEEE
T ss_pred EEeeeecC------------------C-------CcccceeeEECCCC-CEEEEeccccccccceeEeeecCCcEEEEee
Confidence 11111000 0 01113345556555 4565531 134566666776544432
Q ss_pred cCCceEeeeecccCCCcccccceEEEEEecCCCCccceeeeEeecCc-ceEEecCCcEEEEeecCccccCCCceEEEEEC
Q 003171 350 IDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSR-NAIMGAADAVRRVAAKGGFGDDNRRTEALTTS 428 (842)
Q Consensus 350 ~~~~~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~-~~~~g~~~~v~~v~~~g~~~~~~~~v~al~~s 428 (842)
.-. ..+.+.++...... . +......+. ..+.-+.. ....+.. ...+ .+.+.......++++
T Consensus 146 ~~~-~~Ng~~~s~d~~~l-------~-~~dt~~~~I---~~~~~d~~~~~~~~~~--~~~~----~~~~~~g~pdG~~vD 207 (295)
T d2ghsa1 146 DIS-IPNSICFSPDGTTG-------Y-FVDTKVNRL---MRVPLDARTGLPTGKA--EVFI----DSTGIKGGMDGSVCD 207 (295)
T ss_dssp EES-SEEEEEECTTSCEE-------E-EEETTTCEE---EEEEBCTTTCCBSSCC--EEEE----ECTTSSSEEEEEEEC
T ss_pred ccC-CcceeeecCCCceE-------E-Eeeccccee---eEeeecccccccccce--EEEe----ccCcccccccceEEc
Confidence 211 11222222211110 1 111100000 00000000 0000000 0000 011223345678889
Q ss_pred CCCcEEEEe-CCCeEEEEcCCCCeeeeeecCCccEEEEEec---CCEEEEEe
Q 003171 429 IDGMIWTGG-ANGLLLQWDPNGNRLQDFQYLPFAVQCLCTF---GSQIWVGY 476 (842)
Q Consensus 429 ~dg~l~Sgs-~DgtIrlWD~~g~~l~~l~~H~~~V~sls~d---G~~LasGs 476 (842)
.+|.||.+. ..+.|..+|.+|+.+..+..-...++++++- .+.|++.+
T Consensus 208 ~~GnlWva~~~~g~V~~~dp~G~~~~~i~lP~~~~T~~~FGG~d~~~LyvTt 259 (295)
T d2ghsa1 208 AEGHIWNARWGEGAVDRYDTDGNHIARYEVPGKQTTCPAFIGPDASRLLVTS 259 (295)
T ss_dssp TTSCEEEEEETTTEEEEECTTCCEEEEEECSCSBEEEEEEESTTSCEEEEEE
T ss_pred CCCCEEeeeeCCCceEEecCCCcEeeEecCCCCceEEEEEeCCCCCEEEEEE
Confidence 999999886 4567999999999998887766678888874 45666544
|
| >d1wdua_ d.151.1.1 (A:) Endonuclease domain of TRAS1 retrotransposon (ORF2) {Silkworm (Bombyx mori) [TaxId: 7091]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: DNase I-like superfamily: DNase I-like family: DNase I-like domain: Endonuclease domain of TRAS1 retrotransposon (ORF2) species: Silkworm (Bombyx mori) [TaxId: 7091]
Probab=97.43 E-value=8.7e-05 Score=72.55 Aligned_cols=110 Identities=15% Similarity=0.100 Sum_probs=59.9
Q ss_pred EEEEEEEeCCCCCCcccccccccCCCCCceEEEEEeecccCccchhhhhhhhhhcccCCCcchhhHHHHHhhhccCCCce
Q 003171 554 ILAGTWNVGQGRASQDALISWLGSAASDVGIVVVGLQEVEMGAGFLAMSAAKETVGLEGSAVGHWWLDMIGKILDDGSTF 633 (842)
Q Consensus 554 i~~~twNv~~~~~~~~~l~~~l~~~~~~~di~viglQE~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~l~~~l~~~~~y 633 (842)
+-|.||||+..+...+.|..++.. .++||++ |||.-.... .....+ .+..+
T Consensus 3 ~rV~~~Nv~~~~~~~~~l~~~i~~--~~~DIi~--lQE~~~~~~------------------------~~~~~~-~~~~~ 53 (228)
T d1wdua_ 3 YRVLQANLQRKKLATAELAIEAAT--RKAAIAL--IQEPYVGGA------------------------KSMKGF-RGVRV 53 (228)
T ss_dssp EEEEEEECTTCHHHHHHHHHHHHH--HTCSEEE--EESCCC------------------------------CCC-SSCEE
T ss_pred EEEEeeccCCChHHHHHHHHHHHh--cCCCEEE--EECCCcCCC------------------------Cccccc-cceEE
Confidence 468899999877766777777763 4677765 899643210 000111 11222
Q ss_pred EEEeeeeceeeEEEEEEeccccCccCceeeceeecccCcccCCCCeeEEEEEEeCeEEEEEeecCcCCcc
Q 003171 634 ERVGSRQLAGLLIAVWVRKNLKDYVGDVDVAAVPCGFGRAIGNKGAVGLRVRVYDRIMCFVNCHFAAHLE 703 (842)
Q Consensus 634 ~~v~s~~l~g~~l~vf~r~~~~~~i~~v~~~~v~~G~~~~~gnKG~v~i~~~i~~~~~~Fv~~HLaa~~~ 703 (842)
.......-+.....+++++... ...... .......+.+++......++++|+|+.+...
T Consensus 54 ~~~~~~~~~~~~~~~~~~~~~~------~~~~~~-----~~~~~~~~~~~i~~~~~~i~v~~~y~~~~~~ 112 (228)
T d1wdua_ 54 FQSTAQGDGTVKAAIAVFDHDL------DVIQYP-----QLTTNNIVVVGIRTRAWEITLVSYYFEPDKP 112 (228)
T ss_dssp EECCCCTTCCCCEEEEECCSSC------EEEECT-----TTCCSSEEEEEEECSSCEEEEEEEECCTTSC
T ss_pred EeccCCCCCCcceEEEEEcccc------ceeccc-----CCCCCCEEEEEEEcCCccEEEEEEEeCCccc
Confidence 2222222222333445555332 111110 1124466778888888999999999987643
|
| >d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP) species: Squid (Loligo vulgaris) [TaxId: 6622]
Probab=97.42 E-value=0.028 Score=57.62 Aligned_cols=65 Identities=12% Similarity=0.109 Sum_probs=47.8
Q ss_pred EEEEECCCCcEEEEe-CCCeEEEEcCC-CCeeeeeecCCccEEEEEe--cCCEEEEEe-cCcEEEEEeCC
Q 003171 423 EALTTSIDGMIWTGG-ANGLLLQWDPN-GNRLQDFQYLPFAVQCLCT--FGSQIWVGY-MNGIVQVLDLE 487 (842)
Q Consensus 423 ~al~~s~dg~l~Sgs-~DgtIrlWD~~-g~~l~~l~~H~~~V~sls~--dG~~LasGs-~DgtIrlWD~~ 487 (842)
..++++.+|.||.+. ..+.|.+||.+ ++.+.++..+.....++++ |++.|++.+ ..++|...++.
T Consensus 229 dGiavD~~GnlyVa~~~~g~I~~~dp~~g~~~~~i~~p~~~~t~~afg~d~~~lyVt~~~~g~i~~~~~~ 298 (314)
T d1pjxa_ 229 DGMDFDEDNNLLVANWGSSHIEVFGPDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQ 298 (314)
T ss_dssp EEEEEBTTCCEEEEEETTTEEEEECTTCBSCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECS
T ss_pred eeeEEecCCcEEEEEcCCCEEEEEeCCCCEEEEEEECCCCCEEEEEEeCCCCEEEEEECCCCcEEEEECC
Confidence 357888999987665 56789999995 5666667766667788776 566666654 57888888864
|
| >d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Serine/threonine-protein kinase PknD species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.39 E-value=0.02 Score=56.75 Aligned_cols=100 Identities=9% Similarity=-0.021 Sum_probs=61.3
Q ss_pred EEEEECCCCcEEEE-eCCCeEEEEcCCCCeeeeee-cCCccEEEEEec--CCEEEEEecCcEEEEEeCCCccccccc-cc
Q 003171 423 EALTTSIDGMIWTG-GANGLLLQWDPNGNRLQDFQ-YLPFAVQCLCTF--GSQIWVGYMNGIVQVLDLEGNLLGGWV-AH 497 (842)
Q Consensus 423 ~al~~s~dg~l~Sg-s~DgtIrlWD~~g~~l~~l~-~H~~~V~sls~d--G~~LasGs~DgtIrlWD~~g~~i~~l~-gH 497 (842)
..++++++|.++.+ ..++.|..+|.++.....+. ..-.....|+.| |...++-...+.|..++..+.....+. ..
T Consensus 143 ~~i~~~~~g~~~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~p~gi~~d~~g~l~vsd~~~~~i~~~~~~~~~~~~~~~~~ 222 (260)
T d1rwia_ 143 DGVAVDNSGNVYVTDTDNNRVVKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTVLPFTG 222 (260)
T ss_dssp CEEEECTTCCEEEEEGGGTEEEEECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEETTTTEEEEECTTCSCCEECCCCS
T ss_pred ceeeecCCCCEeeeccccccccccccccceeeeeeccccCCCccceeeeeeeeeeeecCCCEEEEEeCCCCeEEEEccCC
Confidence 45778888887554 55677999999765544443 344555677764 555555556788999988755333322 22
Q ss_pred ccCEEEEEe--CCCEEEEEcCCCCeee
Q 003171 498 SSPVIKMAV--GAGYIFTLANHGGIRG 522 (842)
Q Consensus 498 ~~~V~sla~--dg~~l~S~S~DgtIrv 522 (842)
-.....|+. +|...++-..++.|+.
T Consensus 223 ~~~P~~i~~d~~g~l~vad~~~~rI~~ 249 (260)
T d1rwia_ 223 LNTPLAVAVDSDRTVYVADRGNDRVVK 249 (260)
T ss_dssp CCCEEEEEECTTCCEEEEEGGGTEEEE
T ss_pred CCCeEEEEEeCCCCEEEEECCCCEEEE
Confidence 244567775 4555555555554443
|
| >d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP) species: Squid (Loligo vulgaris) [TaxId: 6622]
Probab=97.32 E-value=0.023 Score=58.31 Aligned_cols=104 Identities=5% Similarity=-0.048 Sum_probs=60.7
Q ss_pred EEEECCCC-----cEEE-EeCCCeEEEEcC--CCCee-----eeeec-CCccEEEEEe--cCCEEEEEecCcEEEEEeCC
Q 003171 424 ALTTSIDG-----MIWT-GGANGLLLQWDP--NGNRL-----QDFQY-LPFAVQCLCT--FGSQIWVGYMNGIVQVLDLE 487 (842)
Q Consensus 424 al~~s~dg-----~l~S-gs~DgtIrlWD~--~g~~l-----~~l~~-H~~~V~sls~--dG~~LasGs~DgtIrlWD~~ 487 (842)
.+++++++ .|+. -+..+.|..+|+ .|... ..+.+ +......++. +|+..++....+.|.+||.+
T Consensus 176 Gi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdGiavD~~GnlyVa~~~~g~I~~~dp~ 255 (314)
T d1pjxa_ 176 GIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHIEVFGPD 255 (314)
T ss_dssp EEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTEEEEECTT
T ss_pred eeEECCCCCcceeEEEEEeecccceEEeeccCccccceeeEEEEccccccccceeeEEecCCcEEEEEcCCCEEEEEeCC
Confidence 45565554 3544 355677888876 23221 12221 1122334655 46644444567899999988
Q ss_pred -CcccccccccccCEEEEEe--CCC-EEEEEcCCCCeeeccccC
Q 003171 488 -GNLLGGWVAHSSPVIKMAV--GAG-YIFTLANHGGIRGWNVTS 527 (842)
Q Consensus 488 -g~~i~~l~gH~~~V~sla~--dg~-~l~S~S~DgtIrvWd~~~ 527 (842)
++.+..+..+...+.++++ |++ ..++.+.+++|...++..
T Consensus 256 ~g~~~~~i~~p~~~~t~~afg~d~~~lyVt~~~~g~i~~~~~~~ 299 (314)
T d1pjxa_ 256 GGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQR 299 (314)
T ss_dssp CBSCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECSS
T ss_pred CCEEEEEEECCCCCEEEEEEeCCCCEEEEEECCCCcEEEEECCC
Confidence 4556666666677888886 454 445777777666555443
|
| >d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Brain tumor cg10719-pa species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=97.32 E-value=0.1 Score=51.96 Aligned_cols=65 Identities=11% Similarity=0.050 Sum_probs=45.8
Q ss_pred eEEEEECCCCcEEEEe--CCCeEEEEcCCCCeeeeeecCC--ccEEEEE--ecCCEEEEEecCcEEEEEeCC
Q 003171 422 TEALTTSIDGMIWTGG--ANGLLLQWDPNGNRLQDFQYLP--FAVQCLC--TFGSQIWVGYMNGIVQVLDLE 487 (842)
Q Consensus 422 v~al~~s~dg~l~Sgs--~DgtIrlWD~~g~~l~~l~~H~--~~V~sls--~dG~~LasGs~DgtIrlWD~~ 487 (842)
...++++++|.|+.+. .++.|.+++.+|+.+.++.... .....|+ ++|. |++++.+..|++|.-.
T Consensus 202 P~giavD~~G~i~Vad~~~~~~v~~f~~~G~~~~~~~~~~~~~~p~~vav~~dG~-l~V~~~n~~v~~fr~~ 272 (279)
T d1q7fa_ 202 PIGVGINSNGEILIADNHNNFNLTIFTQDGQLISALESKVKHAQCFDVALMDDGS-VVLASKDYRLYIYRYV 272 (279)
T ss_dssp EEEEEECTTCCEEEEECSSSCEEEEECTTSCEEEEEEESSCCSCEEEEEEETTTE-EEEEETTTEEEEEECS
T ss_pred CcccccccCCeEEEEECCCCcEEEEECCCCCEEEEEeCCCCCCCEeEEEEeCCCc-EEEEeCCCeEEEEEee
Confidence 3467888999977664 2457999999999888875432 2345555 4564 5666789999999853
|
| >d1vyba_ d.151.1.1 (A:) Endonuclease domain of LINE-1 reverse transcriptase homolog {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: DNase I-like superfamily: DNase I-like family: DNase I-like domain: Endonuclease domain of LINE-1 reverse transcriptase homolog species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.19 E-value=0.00032 Score=68.75 Aligned_cols=111 Identities=16% Similarity=0.165 Sum_probs=58.6
Q ss_pred EEEEEEEeCCCCC--CcccccccccCCCCCceEEEEEeecccCccchhhhhhhhhhcccCCCcchhhHHHHHhhhccCCC
Q 003171 554 ILAGTWNVGQGRA--SQDALISWLGSAASDVGIVVVGLQEVEMGAGFLAMSAAKETVGLEGSAVGHWWLDMIGKILDDGS 631 (842)
Q Consensus 554 i~~~twNv~~~~~--~~~~l~~~l~~~~~~~di~viglQE~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~l~~~l~~~~ 631 (842)
|-++||||++-.- ....+.+||.. .+||| |+|||+.....-. .+ . .......
T Consensus 6 ~kv~s~Nv~g~~~~~~~~~i~~~i~~--~~~DI--i~LQE~~~~~~~~----~~--~----------------~~~~~~~ 59 (236)
T d1vyba_ 6 ITILTLNINGLNSAIKRHRLASWIKS--QDPSV--CCIQETHLTCRDT----HR--L----------------KIKGWRK 59 (236)
T ss_dssp EEEEEEECSCCCSHHHHHHHHHHHHH--HCCSE--EEEECCCCCTTSG----GG--C----------------CCTTCCE
T ss_pred eEEEEEEcCCccchhhHHHHHHHHHH--CCCeE--EEEEcccCccccc----hh--h----------------hhcccce
Confidence 7789999976532 12467788875 45665 6899974321100 00 0 0011111
Q ss_pred ceEEEeeeeceeeEEEEEEeccccCccCceeeceeecccCcccCCCCeeEEEEEEeCeEEEEEeecCcCCc
Q 003171 632 TFERVGSRQLAGLLIAVWVRKNLKDYVGDVDVAAVPCGFGRAIGNKGAVGLRVRVYDRIMCFVNCHFAAHL 702 (842)
Q Consensus 632 ~y~~v~s~~l~g~~l~vf~r~~~~~~i~~v~~~~v~~G~~~~~gnKG~v~i~~~i~~~~~~Fv~~HLaa~~ 702 (842)
.|.........|+ ++|++..+.... ..+.... ..-.+.+.+.+.+..++++|.|+....
T Consensus 60 ~~~~~~~~~~~g~--~i~~k~~~~~~~-----~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~y~~~~~ 118 (236)
T d1vyba_ 60 IYQANGKQKKAGV--AILVSDKTDFKP-----TKIKRDK-----EGHYIMVKGSIQQEELTILNIYAPNTG 118 (236)
T ss_dssp EEEECCSSSSCCE--EEEECTTCCCEE-----EEEEECT-----TSSEEEEEEEETTEEEEEEEEECCSSS
T ss_pred EEEeeccccccce--eeEeeccccccc-----ccccccc-----cccceeeeeeeccCcceeEEecccccc
Confidence 1222222333343 567776543111 1121221 122456778888999999999997654
|
| >d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: All0351-like domain: Hypothetical protein All0351 homologue species: Nostoc punctiforme [TaxId: 272131]
Probab=97.14 E-value=0.04 Score=55.74 Aligned_cols=112 Identities=11% Similarity=0.007 Sum_probs=75.7
Q ss_pred CceeEEEEecCC-EEEEe--cCCCEEEEeCCCCccccccccccccCCCCCCCCCCeeeeeecCCCeEEEEEcCCCCEEEE
Q 003171 132 GCFLRTIVCTEE-QLWAG--GENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWS 208 (842)
Q Consensus 132 ~~~~~~l~~~~~-~l~~~--~D~~vrvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~V~~la~dpdg~~LaS 208 (842)
+.++..++.+.+ .||++ .++.|..||.+.... .+.. . .+.+.+++++++|+++++
T Consensus 27 ~~~~e~iAv~pdG~l~vt~~~~~~I~~i~p~g~~~-------------------~~~~--~-~~~~~gla~~~dG~l~v~ 84 (302)
T d2p4oa1 27 NTFLENLASAPDGTIFVTNHEVGEIVSITPDGNQQ-------------------IHAT--V-EGKVSGLAFTSNGDLVAT 84 (302)
T ss_dssp TCCEEEEEECTTSCEEEEETTTTEEEEECTTCCEE-------------------EEEE--C-SSEEEEEEECTTSCEEEE
T ss_pred CCCcCCEEECCCCCEEEEeCCCCEEEEEeCCCCEE-------------------EEEc--C-CCCcceEEEcCCCCeEEE
Confidence 346778887755 77764 366777777542111 1111 1 457899999999999999
Q ss_pred EeCCCcEEEEECCCCccCCCCCcceeEEe--cccCCcEEEEEEecCCCEE-EeeCCCcEEEEeCCCc
Q 003171 209 GHRDGRIMCWKMNARLLDSDDGFGEVLSW--QAHRGPVLSLCISSYGDLW-SGSEGGGIKIWPWEAI 272 (842)
Q Consensus 209 Gs~DGtIrlWdl~~g~~~~~~~~~~~~~l--~gH~~~V~slafs~dG~L~-SgS~DgtIrvWd~~t~ 272 (842)
+..++.+.+|+..... .....+ .......+.+++.++|+++ +-+.++.|..++..+.
T Consensus 85 ~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~n~i~~~~~g~~~v~~~~~~~i~~~~~~~~ 144 (302)
T d2p4oa1 85 GWNADSIPVVSLVKSD-------GTVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQP 144 (302)
T ss_dssp EECTTSCEEEEEECTT-------SCEEEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTT
T ss_pred ecCCceEEEEEecccc-------cceeeccccCCccccceeEEccCCCEEeeccccccceeeeccCC
Confidence 9999998888876542 122222 2345678999999999965 6667787777777553
|
| >d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme family: 3-carboxy-cis,cis-mucoante lactonizing enzyme domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme species: Neurospora crassa [TaxId: 5141]
Probab=97.02 E-value=0.0076 Score=63.46 Aligned_cols=107 Identities=7% Similarity=0.093 Sum_probs=59.7
Q ss_pred ceEEEEECCCCc-EEE-EeCCCeEEEEcCC-CC--eeeeeec-----------------CCccE--EEEEecCCEEEEEe
Q 003171 421 RTEALTTSIDGM-IWT-GGANGLLLQWDPN-GN--RLQDFQY-----------------LPFAV--QCLCTFGSQIWVGY 476 (842)
Q Consensus 421 ~v~al~~s~dg~-l~S-gs~DgtIrlWD~~-g~--~l~~l~~-----------------H~~~V--~sls~dG~~LasGs 476 (842)
....++|+|||+ +++ .-.+++|.+|+.+ ++ .+..... +.... ..+++||++|+++.
T Consensus 194 gPr~i~f~pdg~~~yv~~e~~~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvsn 273 (365)
T d1jofa_ 194 HPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASS 273 (365)
T ss_dssp CEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEE
T ss_pred ceEEEEECCCCceEEEeccCCCEEEEEEecCCCceEEEEeeeeccccccccccccccccccCCccceEECCCCCEEEEEc
Confidence 345678899998 434 4457889999884 22 2211110 11112 23567999998864
Q ss_pred c------CcEEEEEeCC--Ccccccc-----cccccCEEEE--Ee-CCCEEEEE-cCCCCeeeccccC
Q 003171 477 M------NGIVQVLDLE--GNLLGGW-----VAHSSPVIKM--AV-GAGYIFTL-ANHGGIRGWNVTS 527 (842)
Q Consensus 477 ~------DgtIrlWD~~--g~~i~~l-----~gH~~~V~sl--a~-dg~~l~S~-S~DgtIrvWd~~~ 527 (842)
. ...|..|++. +.+.... ......-..+ ++ +|++|+.+ ..+++|.+|++..
T Consensus 274 r~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~G~~p~~i~~~p~~G~~l~va~~~s~~v~v~~~~~ 341 (365)
T d1jofa_ 274 RANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKD 341 (365)
T ss_dssp EESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEET
T ss_pred ccCCCccceEEEEEEecCCCceeeEeEeeEEEcCCCCccEEEecCCCCCEEEEEeCCCCeEEEEEEeC
Confidence 3 2347777754 3321111 1111223334 44 68877654 6789999998643
|
| >d2f1na1 d.151.1.1 (A:1-250) Cytolethal distending toxin subunit B {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: DNase I-like superfamily: DNase I-like family: DNase I-like domain: Cytolethal distending toxin subunit B species: Escherichia coli [TaxId: 562]
Probab=96.98 E-value=0.00097 Score=65.88 Aligned_cols=39 Identities=15% Similarity=0.248 Sum_probs=23.3
Q ss_pred CCCeeEEEEEEeCeEEEEEeecCcCCcc-hHHHHHHHHHHHHHh
Q 003171 676 NKGAVGLRVRVYDRIMCFVNCHFAAHLE-AVNRRNADFDHVYRT 718 (842)
Q Consensus 676 nKG~v~i~~~i~~~~~~Fv~~HLaa~~~-~~~~Rn~~~~~I~~~ 718 (842)
+.+.+.+.+ ..+.++|.||.++.+ +-.++.+....+.+.
T Consensus 119 ~r~~~~~~~----~~~~v~n~Hl~~~~~~~~~~~~~~~~~~~~~ 158 (250)
T d2f1na1 119 GRPLLGIRI----GNDAFFTAHAIAMRNNDAPALVEEVYNFFRD 158 (250)
T ss_dssp CCCEEEEEE----TTEEEEEEECCSSSSCSHHHHHHHHHHHHHT
T ss_pred ccceeeEee----ceEEEEEEEcCCCCchhHHHHHHHHHHHHHH
Confidence 445555554 468899999987743 333344445454444
|
| >d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Serine/threonine-protein kinase PknD species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=96.94 E-value=0.17 Score=49.57 Aligned_cols=69 Identities=10% Similarity=0.056 Sum_probs=43.6
Q ss_pred CeEEEEEcCCCCEEEEEeCCCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCCCEEEe-eCCCcEEEEeCC
Q 003171 193 SVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGDLWSG-SEGGGIKIWPWE 270 (842)
Q Consensus 193 ~V~~la~dpdg~~LaSGs~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~L~Sg-S~DgtIrvWd~~ 270 (842)
....++++++|.+.++....+.+++++-.++ .......+ .....+|+++++|+||.+ .....+.+.+..
T Consensus 58 ~p~gvav~~~g~i~v~d~~~~~i~~~~~~~~--------~~~~~~~~-~~~p~~iavd~~g~i~v~d~~~~~~~~~~~~ 127 (260)
T d1rwia_ 58 QPQGLAVDGAGTVYVTDFNNRVVTLAAGSNN--------QTVLPFDG-LNYPEGLAVDTQGAVYVADRGNNRVVKLAAG 127 (260)
T ss_dssp SCCCEEECTTCCEEEEETTTEEEEECTTCSC--------CEECCCCS-CCSEEEEEECTTCCEEEEEGGGTEEEEECTT
T ss_pred CceEEEEcCCCCEEEeeeeeceeeeeeeccc--------eeeeeeee-eeecccccccccceeEeeccccccccccccc
Confidence 3456889999998887777777766654433 22222222 345689999999997644 344455555543
|
| >d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Tricorn protease N-terminal domain family: Tricorn protease N-terminal domain domain: Tricorn protease N-terminal domain species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=96.94 E-value=0.093 Score=51.06 Aligned_cols=64 Identities=14% Similarity=0.200 Sum_probs=41.5
Q ss_pred EEECCCCcEEEEeCCC--eEEEEcCCCCeeeeeec-CCccEEEEEecCCEEEEEecCcEEEEEeCCCc
Q 003171 425 LTTSIDGMIWTGGANG--LLLQWDPNGNRLQDFQY-LPFAVQCLCTFGSQIWVGYMNGIVQVLDLEGN 489 (842)
Q Consensus 425 l~~s~dg~l~Sgs~Dg--tIrlWD~~g~~l~~l~~-H~~~V~sls~dG~~LasGs~DgtIrlWD~~g~ 489 (842)
...+++..++....++ .|.++|++|+.++.++. ....+..+++||++|+- ..++.|.++|+++.
T Consensus 197 ~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~lt~~~~~~~~~~SpDG~~I~f-~~~~~l~~~d~~~g 263 (281)
T d1k32a2 197 PVIVGHRIYFITDIDGFGQIYSTDLDGKDLRKHTSFTDYYPRHLNTDGRRILF-SKGGSIYIFNPDTE 263 (281)
T ss_dssp EEEETTEEEEEECTTSSCEEEEEETTSCSCEECCCCCSSCEEEEEESSSCEEE-EETTEEEEECTTTC
T ss_pred eeeeccccceecccccccceEEEeCCCCceEEeecCCCcccccCcCCCCEEEE-EeCCEEEEEECCCC
Confidence 3444554444444333 46777887766665553 34467788999998776 45788999998843
|
| >d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme family: 3-carboxy-cis,cis-mucoante lactonizing enzyme domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme species: Neurospora crassa [TaxId: 5141]
Probab=96.84 E-value=0.022 Score=59.79 Aligned_cols=78 Identities=5% Similarity=-0.067 Sum_probs=46.7
Q ss_pred cEEEEEEecCCC-EEEee-CCCcEEEEeCCCccceeecCCCceeeeEEEEeeceeecccceeccceeeeecCCEEEEEEc
Q 003171 243 PVLSLCISSYGD-LWSGS-EGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSD 320 (842)
Q Consensus 243 ~V~slafs~dG~-L~SgS-~DgtIrvWd~~t~~~~l~~~~~~~~~~~l~~~~s~~~l~~~~~~~~~~~~~s~~v~~las~ 320 (842)
.+.+++|+|||+ |+++. ....|.+|+........ . .... .. .. +....+.++++
T Consensus 146 h~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~~~-~------~~~~------~~-----~~------~g~gPr~i~f~ 201 (365)
T d1jofa_ 146 GIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVE-L------VGSV------DA-----PD------PGDHPRWVAMH 201 (365)
T ss_dssp CEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEE-E------EEEE------EC-----SS------TTCCEEEEEEC
T ss_pred cceEEEECCCCCEEEEeeCCCCEEEEEEccCCCcee-e------ccce------ee-----cC------CCCceEEEEEC
Confidence 478999999998 65554 34578888764321110 0 0000 00 00 12345778888
Q ss_pred CCCCEEEEeC--CCcEEEEEccCCcE
Q 003171 321 HSRAKVWSAG--FLSFALWDARTREL 344 (842)
Q Consensus 321 ~~~~~v~s~s--~~tI~lWD~~tg~~ 344 (842)
+++..++... +.+|.+||..++..
T Consensus 202 pdg~~~yv~~e~~~~V~v~~~~~~~~ 227 (365)
T d1jofa_ 202 PTGNYLYALMEAGNRICEYVIDPATH 227 (365)
T ss_dssp TTSSEEEEEETTTTEEEEEEECTTTC
T ss_pred CCCceEEEeccCCCEEEEEEecCCCc
Confidence 8888877765 46789998876543
|
| >d2a40b1 d.151.1.1 (B:1-260) Deoxyribonuclease I {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: DNase I-like superfamily: DNase I-like family: DNase I-like domain: Deoxyribonuclease I species: Cow (Bos taurus) [TaxId: 9913]
Probab=96.44 E-value=0.00097 Score=64.10 Aligned_cols=41 Identities=12% Similarity=0.103 Sum_probs=24.0
Q ss_pred CCeeEEEEEEeC---eEEEEEeecCcCCcchHHHHHHHHHHHHHhc
Q 003171 677 KGAVGLRVRVYD---RIMCFVNCHFAAHLEAVNRRNADFDHVYRTM 719 (842)
Q Consensus 677 KG~v~i~~~i~~---~~~~Fv~~HLaa~~~~~~~Rn~~~~~I~~~l 719 (842)
.......+.... ..+.+++.|+.... ...|.+....+++.+
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~ 154 (260)
T d2a40b1 111 REPAVVKFSSHSTKVKEFAIVALHSAPSD--AVAEINSLYDVYLDV 154 (260)
T ss_dssp SCCEEEEEECTTSSSSEEEEEECCCCGGG--HHHHHHHHHHHHHHH
T ss_pred ccceeeeeecccccceEEEEEeeccccch--hhHHHHHHHHHHHHH
Confidence 333444443332 57888889987643 445556666666654
|
| >d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Regucalcin species: Agrobacterium tumefaciens [TaxId: 358]
Probab=96.17 E-value=0.7 Score=46.09 Aligned_cols=87 Identities=15% Similarity=0.107 Sum_probs=58.2
Q ss_pred ceEEEEECCCCc-E-EEEeCCCeEEEEcCCC---Ce---ee---eeecCCccEEEEEecCC-EEEEEe-cCcEEEEEeCC
Q 003171 421 RTEALTTSIDGM-I-WTGGANGLLLQWDPNG---NR---LQ---DFQYLPFAVQCLCTFGS-QIWVGY-MNGIVQVLDLE 487 (842)
Q Consensus 421 ~v~al~~s~dg~-l-~Sgs~DgtIrlWD~~g---~~---l~---~l~~H~~~V~sls~dG~-~LasGs-~DgtIrlWD~~ 487 (842)
....+++++++. + ++-+..+.|..++.+. .. .. .+.+.......++.|.. .||++. ..+.|..||.+
T Consensus 149 ~~Ng~~~s~d~~~l~~~dt~~~~I~~~~~d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~~GnlWva~~~~g~V~~~dp~ 228 (295)
T d2ghsa1 149 IPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDTD 228 (295)
T ss_dssp SEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECTT
T ss_pred CcceeeecCCCceEEEeecccceeeEeeecccccccccceEEEeccCcccccccceEEcCCCCEEeeeeCCCceEEecCC
Confidence 345688999986 4 5666677888887632 11 11 11222334556776533 566665 57889999999
Q ss_pred CcccccccccccCEEEEEeC
Q 003171 488 GNLLGGWVAHSSPVIKMAVG 507 (842)
Q Consensus 488 g~~i~~l~gH~~~V~sla~d 507 (842)
|+++..+......++++++.
T Consensus 229 G~~~~~i~lP~~~~T~~~FG 248 (295)
T d2ghsa1 229 GNHIARYEVPGKQTTCPAFI 248 (295)
T ss_dssp CCEEEEEECSCSBEEEEEEE
T ss_pred CcEeeEecCCCCceEEEEEe
Confidence 99988887777779999874
|
| >d1sr4b_ d.151.1.1 (B:) Cytolethal distending toxin subunit B {Haemophilus ducreyi [TaxId: 730]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: DNase I-like superfamily: DNase I-like family: DNase I-like domain: Cytolethal distending toxin subunit B species: Haemophilus ducreyi [TaxId: 730]
Probab=95.66 E-value=0.025 Score=54.83 Aligned_cols=38 Identities=18% Similarity=0.319 Sum_probs=23.2
Q ss_pred EEEEEEEeCCCCCCcc-----cccccccCCCCCceEEEEEeecccC
Q 003171 554 ILAGTWNVGQGRASQD-----ALISWLGSAASDVGIVVVGLQEVEM 594 (842)
Q Consensus 554 i~~~twNv~~~~~~~~-----~l~~~l~~~~~~~di~viglQE~~~ 594 (842)
+-++|||+.+.....+ .+...+. ...++| ||+|||+..
T Consensus 5 ~rv~TwNi~~~~~~~~~~~~~~~~~~~~-~~~~~D--Ii~LQEv~~ 47 (261)
T d1sr4b_ 5 FKVATWNLQGSSAVNESKWNINVRQLLS-GEQGAD--ILMVQEAGS 47 (261)
T ss_dssp SCEEEEECCCCSSSSHHHHHHHHHHHHC-STTCCS--EEEEESCCS
T ss_pred CEEEEEeCCcCCCCccccccHHHHHHHH-hcCCCC--EEEEEccCc
Confidence 4588999987544322 1222222 246788 589999964
|
| >d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: TolB, C-terminal domain family: TolB, C-terminal domain domain: TolB, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=94.70 E-value=1.9 Score=40.98 Aligned_cols=22 Identities=23% Similarity=0.229 Sum_probs=16.6
Q ss_pred EEecccCCcEEEEEEecCCC-EE
Q 003171 235 LSWQAHRGPVLSLCISSYGD-LW 256 (842)
Q Consensus 235 ~~l~gH~~~V~slafs~dG~-L~ 256 (842)
..+..+.+.+.+-+|||||+ |+
T Consensus 32 ~~l~~~~~~~~sP~wSPDGk~IA 54 (269)
T d2hqsa1 32 FVVHRSPQPLMSPAWSPDGSKLA 54 (269)
T ss_dssp EEEEEESSCEEEEEECTTSSEEE
T ss_pred EEEecCCCceeeeEECCCCCEEE
Confidence 33444567889999999998 65
|
| >d1hd7a_ d.151.1.1 (A:) DNA repair endonuclease Hap1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: DNase I-like superfamily: DNase I-like family: DNase I-like domain: DNA repair endonuclease Hap1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.70 E-value=0.17 Score=49.39 Aligned_cols=37 Identities=27% Similarity=0.452 Sum_probs=24.1
Q ss_pred eEEEEEEEeCCCCC-CcccccccccCCCCCceEEEEEeeccc
Q 003171 553 KILAGTWNVGQGRA-SQDALISWLGSAASDVGIVVVGLQEVE 593 (842)
Q Consensus 553 ~i~~~twNv~~~~~-~~~~l~~~l~~~~~~~di~viglQE~~ 593 (842)
.|-+.||||++-+. ....+.+||.. .+||| |||||+-
T Consensus 18 ~mki~S~NvnGlr~~~~~~~~~~i~~--~~pDI--i~LQE~k 55 (275)
T d1hd7a_ 18 TLKICSWNVDGLRAWIKKKGLDWVKE--EAPDI--LCLQETK 55 (275)
T ss_dssp CEEEEEEECSSHHHHHHTTHHHHHHH--HCCSE--EEEECCC
T ss_pred cEEEEEEEeccHHhhhhccHHHHHHh--CCCCE--EEEEccc
Confidence 47899999986321 12334567774 45675 6899973
|
| >d1akoa_ d.151.1.1 (A:) DNA-repair enzyme exonuclease III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: DNase I-like superfamily: DNase I-like family: DNase I-like domain: DNA-repair enzyme exonuclease III species: Escherichia coli [TaxId: 562]
Probab=88.63 E-value=0.045 Score=52.38 Aligned_cols=36 Identities=25% Similarity=0.308 Sum_probs=26.5
Q ss_pred EEEEEEeCCCCCCcccccccccCCCCCceEEEEEeecccC
Q 003171 555 LAGTWNVGQGRASQDALISWLGSAASDVGIVVVGLQEVEM 594 (842)
Q Consensus 555 ~~~twNv~~~~~~~~~l~~~l~~~~~~~di~viglQE~~~ 594 (842)
-+.||||++-+...+.+.+||.. .+|| ||||||+-.
T Consensus 2 ki~S~NvnG~r~r~~~i~~~i~~--~~~D--Ii~LQEv~~ 37 (268)
T d1akoa_ 2 KFVSFNINGLRARPHQLEAIVEK--HQPD--VIGLQETKV 37 (268)
T ss_dssp EEEEEECSCGGGCHHHHHHHHHH--HCCS--EEEEECCCC
T ss_pred EEEEEEeCCHHHhHHHHHHHHHH--CCCC--EEEEEeeec
Confidence 47899998755555678888874 4567 678999843
|
| >d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.41 E-value=21 Score=37.08 Aligned_cols=101 Identities=8% Similarity=-0.082 Sum_probs=59.4
Q ss_pred ecCCCEEEEeCCCCccccccccccccCCCCCCCCCCeeeeeecCCCeEEEEEcCCCCEEEEEe---------CCCcEEEE
Q 003171 148 GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGH---------RDGRIMCW 218 (842)
Q Consensus 148 ~~D~~vrvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~V~~la~dpdg~~LaSGs---------~DGtIrlW 218 (842)
..++.|.+||+.+...... .....+ . .-.+....+|||++.|+.++ ..+.+-++
T Consensus 34 ~~~g~i~~~~~~~~~~~~l------------~~~~~~----~-~~~~~~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~ 96 (465)
T d1xfda1 34 EQKGTVRLWNVETNTSTVL------------IEGKKI----E-SLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLS 96 (465)
T ss_dssp CSSSCEEEBCGGGCCCEEE------------ECTTTT----T-TTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEE
T ss_pred eCCCcEEEEECCCCCEEEE------------EcCccc----c-ccccceeEECCCCCeEEEEEcccceeEeeccccEEEE
Confidence 4577899999876543211 000000 1 12345567899999887763 45678889
Q ss_pred ECCCCccCCCCCcceeEEecccCCcEEEEEEecCCC-EEEeeCCCcEEEEeCCCc
Q 003171 219 KMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAI 272 (842)
Q Consensus 219 dl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG~-L~SgS~DgtIrvWd~~t~ 272 (842)
|+.++. ...+....+..+.+....|||||+ |+-.. ++-|.+.+..++
T Consensus 97 d~~~~~------~~~l~~~~~~~~~l~~~~wSPDG~~iafv~-~~nl~~~~~~~~ 144 (465)
T d1xfda1 97 KIPHGD------PQSLDPPEVSNAKLQYAGWGPKGQQLIFIF-ENNIYYCAHVGK 144 (465)
T ss_dssp ESSSCC------CEECCCTTCCSCCCSBCCBCSSTTCEEEEE-TTEEEEESSSSS
T ss_pred EccCCc------eeeccCccCCccccceeeeccCCceEEEEe-cceEEEEecCCC
Confidence 998862 112211223344556678999998 65443 566777776553
|
| >d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Nidogen species: Mouse (Mus musculus) [TaxId: 10090]
Probab=86.09 E-value=15 Score=35.10 Aligned_cols=72 Identities=13% Similarity=0.220 Sum_probs=49.2
Q ss_pred CCeEEEEEcCCCC-EEEEEeCCCcEEEEECCCCccCCCCCcceeEEecccCCcEEEEEEecCC-CE-EEeeCCCcEEEEe
Q 003171 192 SSVMCMVGDEASG-VVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYG-DL-WSGSEGGGIKIWP 268 (842)
Q Consensus 192 ~~V~~la~dpdg~-~LaSGs~DGtIrlWdl~~g~~~~~~~~~~~~~l~gH~~~V~slafs~dG-~L-~SgS~DgtIrvWd 268 (842)
..+.+|++|+..+ +.|+=..++.|+.-+++++. .......-...+.+|+++.-+ +| |+-...+.|.+.+
T Consensus 36 ~~~~~ld~D~~~~~iywsd~~~~~I~~~~l~g~~--------~~~v~~~~~~~p~~iAvD~~~~~lY~~d~~~~~I~~~~ 107 (263)
T d1npea_ 36 KVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGE--------PTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAK 107 (263)
T ss_dssp EEEEEEEEETTTTEEEEEETTTTEEEEEESSSCC--------CEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred CcEEEEEEEeCCCEEEEEECCCCeEEEEEcccCC--------cEEEEEeccccccEEEEeccCCeEEEeccCCCEEEEEe
Confidence 3577899998665 55555667889888887752 222222223568999998755 46 5767778999988
Q ss_pred CCC
Q 003171 269 WEA 271 (842)
Q Consensus 269 ~~t 271 (842)
++.
T Consensus 108 ~dg 110 (263)
T d1npea_ 108 MDG 110 (263)
T ss_dssp TTS
T ss_pred cCC
Confidence 865
|
| >d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Tricorn protease N-terminal domain family: Tricorn protease N-terminal domain domain: Tricorn protease N-terminal domain species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=81.51 E-value=1 Score=43.13 Aligned_cols=63 Identities=14% Similarity=0.007 Sum_probs=39.9
Q ss_pred EECCC--Cc-EEEEeCCCeEEEEcCCCCeeeeeecCCccEEE--EEecCCEEEEEec-C-----cEEEEEeCCCc
Q 003171 426 TTSID--GM-IWTGGANGLLLQWDPNGNRLQDFQYLPFAVQC--LCTFGSQIWVGYM-N-----GIVQVLDLEGN 489 (842)
Q Consensus 426 ~~s~d--g~-l~Sgs~DgtIrlWD~~g~~l~~l~~H~~~V~s--ls~dG~~LasGs~-D-----gtIrlWD~~g~ 489 (842)
..||| |. ++-.+ ++.|.+.|+.|...+.++.+...+.. +++||++||-... + ..|.++++.+.
T Consensus 5 ~~sPdi~G~~v~f~~-~~dl~~~d~~~g~~~~Lt~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~g 78 (281)
T d1k32a2 5 LLNPDIHGDRIIFVC-CDDLWEHDLKSGSTRKIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENG 78 (281)
T ss_dssp CEEEEEETTEEEEEE-TTEEEEEETTTCCEEEEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTT
T ss_pred ccCCCCCCCEEEEEe-CCcEEEEECCCCCEEEEecCCCcccCEEECCCCCEEEEEEeeCCCCCceEEEEEEecCC
Confidence 35677 76 44333 55687779966556667766666654 5789998885432 2 24667777643
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