Citrus Sinensis ID: 003176

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840--
MKLFAMGKGKLILICQSGGEFVTKDDGSLSYDGGEANAVAINPETHFGDLKLKLAELLNLEYKSLSVKYFLPGNKQTLITICNDKDLKRMFDFHEGSVTADVFVIGTSGFDREAFAIETGRASGIKLAETVSPSKASKALVTTDPVSTPAGPSAANLTPNSLADPADGTAHSPITYDVSATPADTVKKRRRAASRKNSTDAPTAAVTKTVRKTKKMAPRRKRMRKDYLTESDDDMEEERDTSAGLDGTNGALDVASEFNNLSPEEMVAMWKDSITGVGQEFKSVIEFRDALQRFSIAHRFRYKFKKNETSRASGMCAAEGCSWSFYASWVPSERVFKIKKMNETHTCGESSKTAHPTKNWLVSIIKDKLRESPHHKPKEISKSILRDFGVTLNYSQVYRGIEGAREQLQGSYKEAYNQLPWFCDKLLEANPGSFIKLLIDNDKKFQRLFISFDASIHGFQNGCRPLLFLDSTSLRSKYHEILLTATALDGDDCIFPVAFAIVDTENDDSWNWFLEELRSAVSSSRSITFVSDKQKGLMESVLKIFENAHHGYSIYHLLDNFMKNLKGPFHGEGKGSLPVNFLAAACAARLDSFRMSAEQVKKVSSNAFDWMMQIAPEYWTNAAFKGESYQHITFDVAESYANWIEEVWELPLIQKLERLLCKMTEMINNRRMNSSGWFTKLIPSREQLVKDASRRAHYLKVLFSSDTLFEVQGDSTHVVDMNKRDCSCLVWKATGLPCHHAIAVFNSTGRNVYDYCSSYFTVDSYRSTYSKSINLVEAIFKPPAKEKASVEEAEQVLPPSSTRTPTTHQKRRRKILGIEHRTVTCTKCKGIGHNKLSCKETS
ccEEEEcccEEEEEEEEccEEEEcccccEEEEcccccEEEccccccHHHHHHHHHHHcccccccEEEEEEEcccccccEEEEccHHHHHHHHHcccccEEEEEEEEEccccccccEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHccccccccccccccccccccccccccHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHcccEEEEEEEcccEEEEEEccccccEEEEEEEcccccEEEEEEcccccccccccccccccHHHHHHHHHHHHcccccccHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHccHHHHHccHHHHHHHHHHHccccEEEEEcccccccEEEEEcccccccccccccccEEEccccccccccccEEEEEEEEccccccccEEEEEEcccccccHHHHHHHHHHHccccccEEEEEcccccHHHHHHHHcccccccccHHHHHHHHHHHccccccccccccccccHHHHHHHHcHHHHHHHHHHHHHccHHHHHHHHHHcccHHHHcccccccEEEEcccHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHcccEEEEEEccccEEEEEcccEEEEEEcccEEEccccccccccccHHHHHHHHccccccccccccccHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccEEEcccccccccccccccccc
cEEEEEcccEEEEEEEEccEEEEcccccEEEccccEEEEEEcccccHHHHHHHHHHHcccccccEEEEEEccccccEEEEEEccHHHHHHHHHHccccEEEEEEEEcEccccccEEcccccccccccccccccccccccccccccccccccccccccccHccccccccccccccccccccccccccccccccHccccccccccccccccccccccccccccccccccccccccHHHcccccccccccccccHHcccccccccccccccccccccEEEcEEcccHHHHHHHHHHHHHHccccEEEEEccccEEEEEEEcccccEEEEEEEcccccEEEEEEEccccccccccccccccHHHHHHHHHHHHHccccccHHHHHHHHHHHcccEEcHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHccccEEEEEcccccHHHHEEEEHHHHHHHHHHccccEEEEEccEEccccccEEEEEEEEcccccEEEEEEEEEcccccHHHHHHHHHHHHHHcccccEEEEEcccHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHccHHHHHHHHHccHHHHHHHHcccccccccccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHcccEEEEEcccEEEEEEcccEEEEEEcccEccccccccccccHHHHHHHHHHccccHHHHHHHHccHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEccccccccccccccccc
mklfamgkGKLILICQsggefvtkddgslsydggeanavainpethfGDLKLKLAELLNLEYKSLSvkyflpgnkqtliticndkdlkrmfdfhegsvtaDVFVigtsgfdreAFAIETGRASGIKLAetvspskaskalvttdpvstpagpsaanltpnsladpadgtahspitydvsatpadtVKKRRRAAsrknstdaptaAVTKTVRKTkkmaprrkrmrkdyltesdddmeeerdtsagldgtngaldvasefnnlspEEMVAMWKDSITGVGQEFKSVIEFRDALQRFSIAHRFRYkfkknetsrasgmcaaegcswsfyaswvpserVFKIKKmnethtcgessktahptkNWLVSIIKDklresphhkpkeISKSILRDFGVTLNYSQVYRGIEGAREQLQGSYKEAYNQLPWFCDKlleanpgsfIKLLIDNDKKFQRLFISFDASihgfqngcrpllfldstslrsKYHEILLTAtaldgddcifPVAFAIvdtenddsWNWFLEELRSAvsssrsitfvsdKQKGLMESVLKIFENAHHGYSIYHLLDNFMknlkgpfhgegkgslpVNFLAAACAARLDSFRMSAEQVKKVSSNAFDWMMQIApeywtnaafkgesyqhITFDVAESYANWIEEVWELPLIQKLERLLCKMTEMInnrrmnssgwftkliPSREQLVKDASRRAHYLKVLFSsdtlfevqgdsthvvdmnkrdcsclvwkatglpchHAIAVFNstgrnvydycssyftvdsyrSTYSKSINLVEAifkppakekasveeaeqvlppsstrtptthqKRRRKIlgiehrtvtctkckgighnklsckets
MKLFAMGKGKLILICQSGGEFVTKDDGSLSYDGGEANAVAINPETHFGDLKLKLAELLNLEYKSLSvkyflpgnkqTLITICNDKDLKRMFDFHEGSVTADVFVIGTSGFDREAFAIETGRASGIKLAETVSPSKASKALVTTDPVSTPAGPSAANLTPNSLADPADGTAHSPitydvsatpadtvkkrrraasrknstdaptaavtktvrktkkmaprrkrmrkdyltesdddmeeERDTsagldgtngALDVASEFNNLSPEEMVAMWKDSITGVGQEFKSVIEFRDALQRFSIAHRFRYKFKKNETSRASGMCAAEGCSWSFYASWVPSERVFKIKKMNEthtcgessktahptknWLVSIIKdklresphhkpkeisksilrdfGVTLNYSQVYRGIEGAREQLQGSYKEAYNQLPWFCDKLLEANPGSFIKLLIDNDKKFQRLFISFDASIHGFQNGCRPLLFLDSTSLRSKYHEILLTataldgddCIFPVAFAIVDTENDDSWNWFLEELRsavsssrsitfvsdkQKGLMESVLKIFENAHHGYSIYHLLDNFMKNLKGPFHGEGKGSLPVNFLAAACAARLDSFRMSAEQVKKVSSNAFDWMMQIAPEYWTNAAFKGESYQHITFDVAESYANWIEEVWELPLIQKLERLLCKMTEMinnrrmnssgwftklIPSREQLVKDASRRAHYLKVlfssdtlfeVQGDSTHVVDMNKRDCSCLVWKATGLPCHHAIAVFNSTGRNVYDYCSSYFTVDSYRSTYSKSINLVEAIFKPPAKEKAsveeaeqvlppsstrtptthqkrrrkilgiehrtvtctkckgighnklsckets
MKLFAMGKGKLILICQSGGEFVTKDDGSLSYDGGEANAVAINPETHFGDlklklaellnleYKSLSVKYFLPGNKQTLITICNDKDLKRMFDFHEGSVTADVFVIGTSGFDREAFAIETGRASGIKLAETVSPSKASKALVTTDPVSTPAGPSAANLTPNSLADPADGTAHSPITYDVSATPADTVkkrrraasrkNSTDaptaavtktvrktkkmaprrkrmrkDYLTESDDDMEEERDTSAGLDGTNGALDVASEFNNLSPEEMVAMWKDSITGVGQEFKSVIEFRDALQRFSIAHRFRYKFKKNETSRASGMCAAEGCSWSFYASWVPSERVFKIKKMNETHTCGESSKTAHPTKNWLVSIIKDKLRESPHHKPKEISKSILRDFGVTLNYSQVYRGIEGAREQLQGSYKEAYNQLPWFCDKLLEANPGSFIKLLIDNDKKFQRLFISFDASIHGFQNGCRPLLFLDSTSLRSKYHEILLTATALDGDDCIFPVAFAIVDTENDDSWNWFLEELRSAVSSSRSITFVSDKQKGLMESVLKIFENAHHGYSIYHLLDNFMKNLKGPFHGEGKGSLPVNFLAAACAARLDSFRMSAEQVKKVSSNAFDWMMQIAPEYWTNAAFKGESYQHITFDVAESYANWIEEVWELPLIQKLERLLCKMTEMINNRRMNSSGWFTKLIPSREQLVKDASRRAHYLKVLFSSDTLFEVQGDSTHVVDMNKRDCSCLVWKATGLPCHHAIAVFNSTGRNVYDYCSSYFTVDSYRSTYSKSINLVEAIFKPPAKEKASVEEAEQVLPPSSTRTPTTHQKRRRKILGIEHRTVTCTKCKGIGHNKLSCKETS
***FAMGKGKLILICQSGGEFVTKDDGSLSYDGGEANAVAINPETHFGDLKLKLAELLNLEYKSLSVKYFLPGNKQTLITICNDKDLKRMFDFHEGSVTADVFVIGTSGFDREAFAIETGRASGI*******************************************************************************************************************************************EMVAMWKDSITGVGQEFKSVIEFRDALQRFSIAHRFRYKFKKNETSRASGMCAAEGCSWSFYASWVPSERVFKIKKMNET************TKNWLVSIIKD***************SILRDFGVTLNYSQVYRGIEGAREQLQGSYKEAYNQLPWFCDKLLEANPGSFIKLLIDNDKKFQRLFISFDASIHGFQNGCRPLLFLDSTSLRSKYHEILLTATALDGDDCIFPVAFAIVDTENDDSWNWFLEELRSAVSSSRSITFVSDKQKGLMESVLKIFENAHHGYSIYHLLDNFMKNLKGPFHGEGKGSLPVNFLAAACAARLDSFRMSAEQVKKVSSNAFDWMMQIAPEYWTNAAFKGESYQHITFDVAESYANWIEEVWELPLIQKLERLLCKMTEMINNRRMNSSGWFTKLIPSREQLVKDASRRAHYLKVLFSSDTLFEVQGDSTHVVDMNKRDCSCLVWKATGLPCHHAIAVFNSTGRNVYDYCSSYFTVDSYRSTYSKSINLVEAIF**********************************ILGIEHRTVTCTKCKGIGH*********
*KL****KGKLILICQSGGEFVTKDDGSLSYDGGEANAVAINPETHFGDLKLKLAELLNLEYKSLSVKYFLPGNKQTLITICNDKDLKRMFDFHEGSVTADVFVIGTSGFDR*********************************************************AHSPIT***SA***********AASRKNSTDAPTAAVTKT**********************************************SEF**LSPEEMVAMWKDSITGVGQEFKSVIEFRDALQRFSIAHRFRYKFKKNETSRASGMCAAEGCSWSFYASWVPSERVFKIKKMNETHTCGESSKTAHPTKNWLVSIIKDKLRESPHHKPKEISKSILRDFGVTLNYSQVYRGIEGAREQLQGSYKEAYNQLPWFCDKLLEANPGSFIKLLIDNDKKFQRLFISFDASIHGFQNGCRPLLFLDSTSLRSKYHEILLTATALDGDDCIFPVAFAIVDTENDDSWNWFLEELRSAVSSSRSITFVSDKQKGLMESVLKIFENAHHGYSIYHLLDNFMKNLKGPFHGEGKGSLPVNFLAAACAARLDSFRMSAEQVKKVSSNAFDWMMQIAPEYWTNAAFKGESYQHITFDVAESYANWIEEVWELPLIQKLERLLCKMTEMINNRRMNSSGWFTKLIPSREQLVKDASRRAHYLKVLFSSDTLFEVQGDSTHVVDMNKRDCSCLVWKATGLPCHHAIAVFNSTGRNVYDYCSSYFTVDSYRSTYSKSINLVEAIFKPPAKEKASVEEAEQ******************************TKCKGIG**********
MKLFAMGKGKLILICQSGGEFVTKDDGSLSYDGGEANAVAINPETHFGDLKLKLAELLNLEYKSLSVKYFLPGNKQTLITICNDKDLKRMFDFHEGSVTADVFVIGTSGFDREAFAIETGRASGIKLAETVSPSKASKALVTTDPVSTPAGPSAANLTPNSLADPADGTAHSPITYDVSATPAD**************************************MRKDYLT*************AGLDGTNGALDVASEFNNLSPEEMVAMWKDSITGVGQEFKSVIEFRDALQRFSIAHRFRYKFKK*********CAAEGCSWSFYASWVPSERVFKIKKMNE***********HPTKNWLVSIIKDKLRESPHHKPKEISKSILRDFGVTLNYSQVYRGIEGAREQLQGSYKEAYNQLPWFCDKLLEANPGSFIKLLIDNDKKFQRLFISFDASIHGFQNGCRPLLFLDSTSLRSKYHEILLTATALDGDDCIFPVAFAIVDTENDDSWNWFLEELRS*************KQKGLMESVLKIFENAHHGYSIYHLLDNFMKNLKGPFHGEGKGSLPVNFLAAACAARLDSFRMSAEQVKKVSSNAFDWMMQIAPEYWTNAAFKGESYQHITFDVAESYANWIEEVWELPLIQKLERLLCKMTEMINNRRMNSSGWFTKLIPSREQLVKDASRRAHYLKVLFSSDTLFEVQGDSTHVVDMNKRDCSCLVWKATGLPCHHAIAVFNSTGRNVYDYCSSYFTVDSYRSTYSKSINLVEAIFKPPA***************************RRKILGIEHRTVTCTKCKGIGHNKLSCKETS
MKLFAMGKGKLILICQSGGEFVTKDDGSLSYDGGEANAVAINPETHFGDLKLKLAELLNLEYKSLSVKYFLPGNKQTLITICNDKDLKRMFDFHEGSVTADVFVIGTSGFDREAFAIE*******************************************************************************************************************************************FNNLSPEEMVAMWKDSITGVGQEFKSVIEFRDALQRFSIAHRFRYKFKKNETSRASGMCAAEGCSWSFYASWVPSERVFKIKKMNETHTCGESSKTAHPTKNWLVSIIKDKLRESPHHKPKEISKSILRDFGVTLNYSQVYRGIEGAREQLQGSYKEAYNQLPWFCDKLLEANPGSFIKLLIDNDKKFQRLFISFDASIHGFQNGCRPLLFLDSTSLRSKYHEILLTATALDGDDCIFPVAFAIVDTENDDSWNWFLEELRSAVSSSRSITFVSDKQKGLMESVLKIFENAHHGYSIYHLLDNFMKNLKGPFHGEGKGSLPVNFLAAACAARLDSFRMSAEQVKKVSSNAFDWMMQIAPEYWTNAAFKGESYQHITFDVAESYANWIEEVWELPLIQKLERLLCKMTEMINNRRMNSSGWFTKLIPSREQLVKDASRRAHYLKVLFSSDTLFEVQGDSTHVVDMNKRDCSCLVWKATGLPCHHAIAVFNSTGRNVYDYCSSYFTVDSYRSTYSKSINLVEAIFKPPAK****VEEAEQVLP********************EHRTVTCTKCKG*******C****
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MKLFAMGKGKLILICQSGGEFVTKDDGSLSYDGGEANAVAINPETHFGDLKLKLAELLNLEYKSLSVKYFLPGNKQTLITICNDKDLKRMFDFHEGSVTADVFVIGTSGFDREAFAIETGRASGIKLAETVSPSKASKALVTTDPVSTPAGPSAANLTPNSLADPADGTAHSPITYDVSATPADTVKKRRRAASRKNSTDAPTAAVTKTVRKTKKMAPRRKRMRKDYLTESDDDMEEERDTSAGLDGTNGALDVASEFNNLSPEEMVAMWKDSITGVGQEFKSVIEFRDALQRFSIAHRFRYKFKKNETSRASGMCAAEGCSWSFYASWVPSERVFKIKKMNETHTCGESSKTAHPTKNWLVSIIKDKLRESPHHKPKEISKSILRDFGVTLNYSQVYRGIEGAREQLQGSYKEAYNQLPWFCDKLLEANPGSFIKLLIDNDKKFQRLFISFDASIHGFQNGCRPLLFLDSTSLRSKYHEILLTATALDGDDCIFPVAFAIVDTENDDSWNWFLEELRSAVSSSRSITFVSDKQKGLMESVLKIFENAHHGYSIYHLLDNFMKNLKGPFHGEGKGSLPVNFLAAACAARLDSFRMSAEQVKKVSSNAFDWMMQIAPEYWTNAAFKGESYQHITFDVAESYANWIEEVWELPLIQKLERLLCKMTEMINNRRMNSSGWFTKLIPSREQLVKDASRRAHYLKVLFSSDTLFEVQGDSTHVVDMNKRDCSCLVWKATGLPCHHAIAVFNSTGRNVYDYCSSYFTVDSYRSTYSKSINLVEAIFKPPAKEKASVEEAEQVLPPSSTRTPTTHQKRRRKILGIEHRTVTCTKCKGIGHNKLSCKETS
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query842
225446217922 PREDICTED: uncharacterized protein LOC10 0.986 0.901 0.532 0.0
147819272856 hypothetical protein VITISV_009875 [Viti 0.928 0.913 0.532 0.0
224144106 1041 predicted protein [Populus trichocarpa] 0.972 0.786 0.505 0.0
224120502 1018 predicted protein [Populus trichocarpa] 0.849 0.702 0.562 0.0
6714398777 unknown protein [Arabidopsis thaliana] g 0.912 0.988 0.402 1e-174
225432189746 PREDICTED: uncharacterized protein LOC10 0.687 0.776 0.490 1e-165
356548025748 PREDICTED: uncharacterized protein LOC10 0.697 0.784 0.467 1e-162
356565507748 PREDICTED: uncharacterized protein LOC10 0.693 0.780 0.467 1e-161
147865779 1147 hypothetical protein VITISV_020810 [Viti 0.672 0.493 0.486 1e-159
449456080770 PREDICTED: uncharacterized protein LOC10 0.720 0.788 0.440 1e-157
>gi|225446217|ref|XP_002263415.1| PREDICTED: uncharacterized protein LOC100254040 [Vitis vinifera] Back     alignment and taxonomy information
 Score =  949 bits (2454), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 493/926 (53%), Positives = 628/926 (67%), Gaps = 95/926 (10%)

Query: 6   MGKGKLILICQSGGEFVTKDDGSLSYDGGEANAVAINPETHFGDLKLKLAELLNLEYKSL 65
           MG+GKLILICQSGG+FVT D+GSLSY GGEA+AV IN ET F DLKLKLAE+ NLEY+SL
Sbjct: 1   MGRGKLILICQSGGKFVTNDEGSLSYTGGEAHAVNINHETFFDDLKLKLAEMWNLEYQSL 60

Query: 66  SVKYFLPGNKQTLITICNDKDLKRMFDFHEGSVTADVFVIGTSGFDREAFAIETGRASGI 125
           S+KYFLPGN++TLIT+  DKDLKRM  FH  SVTADVFV+G  GFD  A  I   R SGI
Sbjct: 61  SIKYFLPGNRKTLITLSTDKDLKRMIGFHGDSVTADVFVMGREGFDSHALNIHACRESGI 120

Query: 126 KLAETV-------SPSKASKALVTTDPVSTPAGPSAA-------NLTPNSLADPADGTAH 171
           KLAETV       +P+ A +      PVS    PS A        +T  +  D     AH
Sbjct: 121 KLAETVNHIAVSMTPAVAPQPFAIA-PVSLGVMPSGAFPIDPVTVVTDVASPDTTTTVAH 179

Query: 172 --------SPITYDVSATPADTVKKRRRAASRKN------------------STDAPTAA 205
                   +P T+ VS T AD++      A   N                  S  APT  
Sbjct: 180 AAVTVSPVAPATFLVS-TVADSLTAVDATAQSLNGISTTANPFAAFTITGDPSAAAPTPT 238

Query: 206 V-----------------------TKTVRKTKKMAPRRKRMRKDYLTESDDDMEEERDTS 242
           V                         TV+K ++ A  +       +    DD+  ++ T 
Sbjct: 239 VPVVIAAIDATAHGSVILDITSTPADTVKKRRRTASWKFGANSPTIVSVTDDVGGKKRT- 297

Query: 243 AGLDGTNGALDVASEFNNLSPEEMVAMWKD-------------------------SITGV 277
           A     + + +     +N+  ++    WKD                          ITGV
Sbjct: 298 ASRKKNSRSQNTVPVADNVEQQQENGPWKDDFNGSSSLVASDDVPLEKLVASWKDGITGV 357

Query: 278 GQEFKSVIEFRDALQRFSIAHRFRYKFKKNETSRASGMCAAEGCSWSFYASWVPSERVFK 337
           GQEFKSV EFR+ALQ+++IAHRF Y+ KKN+T+RASG C AEGCSW  +ASWVP+ + F+
Sbjct: 358 GQEFKSVYEFREALQKYAIAHRFVYRLKKNDTNRASGRCVAEGCSWRIHASWVPAAQSFR 417

Query: 338 IKKMNETHTC-GESSKTAHPTKNWLVSIIKDKLRESPHHKPKEISKSILRDFGVTLNYSQ 396
           IKKM ++HTC G+S K+AHPTKNWLVSIIKD+L+++PHHKPK+I+K I +DFG+ LNY+Q
Sbjct: 418 IKKMTKSHTCGGQSWKSAHPTKNWLVSIIKDRLQDTPHHKPKDIAKCIFQDFGIELNYTQ 477

Query: 397 VYRGIEGAREQLQGSYKEAYNQLPWFCDKLLEANPGSFIKLLIDNDKKFQRLFISFDASI 456
           V+RGIE AREQLQGSYKEAYN LPWFC+KL+E NPGS  KLLI++DK+F+RLF+SF AS+
Sbjct: 478 VWRGIEDAREQLQGSYKEAYNLLPWFCEKLVETNPGSVAKLLINDDKRFERLFVSFHASL 537

Query: 457 HGFQNGCRPLLFLDSTSLRSKYHEILLTATALDGDDCIFPVAFAIVDTENDDSWNWFLEE 516
           HGFQNGCRPLLFLD+TSL+SKY EILL ATA+DG++  FPVAFAIVD E DD+W WFLE+
Sbjct: 538 HGFQNGCRPLLFLDATSLKSKYQEILLIATAVDGNEGFFPVAFAIVDVETDDNWLWFLEQ 597

Query: 517 LRSAVSSSRSITFVSDKQKGLMESVLKIFENAHHGYSIYHLLDNFMKNLKGPFHGEGKGS 576
           L+SA+S+ + +TFVSD++KGL +SVL++FENAHHGYSIY+L++NF KNLKGPFHG+G+GS
Sbjct: 598 LKSAISTLQPMTFVSDREKGLKKSVLEVFENAHHGYSIYYLMENFKKNLKGPFHGDGRGS 657

Query: 577 LPVNFLAAACAARLDSFRMSAEQVKKVSSNAFDWMMQIAPEYWTNAAFKGESYQHITFDV 636
           LP+NFLAA  A RLD F+ S EQ+K+VSS A++W+MQI PE W   +F+GE Y  IT DV
Sbjct: 658 LPINFLAATHAIRLDGFKKSTEQIKRVSSKAYNWVMQIEPECWATVSFEGEHYNQITVDV 717

Query: 637 AESYANWIEEVWELPLIQKLERLLCKMTEMINNRRMNSSGWFTKLIPSREQLVKDASRRA 696
             +Y N IEEV ELP+IQK+E L+C + E IN  + +SS W ++L PS+E+ ++D   +A
Sbjct: 718 IHAYINLIEEVRELPIIQKIEALICMIMESINTCQTDSSTWSSQLTPSKEEKLQDEIIKA 777

Query: 697 HYLKVLFSSDTLFEVQGDSTHVVDMNKRDCSCLVWKATGLPCHHAIAVFNSTGRNVYDYC 756
             LKVLFS+DTLFEV  DS +VV+++  DCSCL WKATGLPC HAIAVFN TGR+VYDYC
Sbjct: 778 RSLKVLFSTDTLFEVHDDSINVVNIDSWDCSCLQWKATGLPCCHAIAVFNCTGRSVYDYC 837

Query: 757 SSYFTVDSYRSTYSKSINLVEAIFKPPAKEKASVEEAEQVLPPSSTRTPTTHQKRRR-KI 815
           S YFT++S+R TYS+SIN + +I K    E+A++     VLPP + R P + QKR+R K 
Sbjct: 838 SRYFTLNSFRLTYSESINPLPSIIKSLDNEEAALHTL-NVLPPCTLR-PLSQQKRKRVKT 895

Query: 816 LGIEHRTVTCTKCKGIGHNKLSCKET 841
             +  R V+CT+CK  GHNK +CK T
Sbjct: 896 EEVMRRAVSCTRCKLAGHNKATCKAT 921

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|147819272|emb|CAN71232.1| hypothetical protein VITISV_009875 [Vitis vinifera] Back     alignment and taxonomy information
>gi|224144106|ref|XP_002325188.1| predicted protein [Populus trichocarpa] gi|222866622|gb|EEF03753.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224120502|ref|XP_002331063.1| predicted protein [Populus trichocarpa] gi|222872993|gb|EEF10124.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|6714398|gb|AAF26087.1|AC012393_13 unknown protein [Arabidopsis thaliana] gi|30793999|gb|AAP40449.1| unknown protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|225432189|ref|XP_002268620.1| PREDICTED: uncharacterized protein LOC100247698 [Vitis vinifera] Back     alignment and taxonomy information
>gi|356548025|ref|XP_003542404.1| PREDICTED: uncharacterized protein LOC100776940 [Glycine max] Back     alignment and taxonomy information
>gi|356565507|ref|XP_003550981.1| PREDICTED: uncharacterized protein LOC100809446 [Glycine max] Back     alignment and taxonomy information
>gi|147865779|emb|CAN81145.1| hypothetical protein VITISV_020810 [Vitis vinifera] Back     alignment and taxonomy information
>gi|449456080|ref|XP_004145778.1| PREDICTED: uncharacterized protein LOC101203656 [Cucumis sativus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query842
TAIR|locus:2014230719 AT1G64260 "AT1G64260" [Arabido 0.667 0.781 0.231 3.9e-29
TAIR|locus:2197122785 AT1G49920 "AT1G49920" [Arabido 0.439 0.471 0.246 8.5e-27
TAIR|locus:1006230722750 AT1G64255 [Arabidopsis thalian 0.657 0.738 0.235 8.8e-26
TAIR|locus:2082420764 FRS7 "FAR1-related sequence 7" 0.347 0.383 0.223 0.00045
TAIR|locus:2014230 AT1G64260 "AT1G64260" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 355 (130.0 bits), Expect = 3.9e-29, P = 3.9e-29
 Identities = 140/606 (23%), Positives = 247/606 (40%)

Query:   228 LTESDDDMEEERDTSAGL-DGTNGALDVASEFNN---LSPEEMVAMW--KDSITGVGQEF 281
             L   D   + +R T   + D  +G+  +  +  N   L P  +  +W   D    +G  F
Sbjct:   132 LESPDSSSKRQRITQQEIVDNNSGSAGILVKVVNSGALKPCLLPRLWIDDDHDMHLGLCF 191

Query:   282 KSVIEFRDALQRFSIAHRFRYKFKKNETSRASGMCAAEGCSWSFYASWVPSERVFKIKKM 341
             K   E + A+  + I  R     ++ E    +  C    C WS  A+ +    + +I K 
Sbjct:   192 KDRDELKKAVDWWCIRRRRNCIVRETEKEMYTFECVRWKCKWSLRAARMEEHGLVEITKY 251

Query:   342 NETHTCGESSKTAHPTKNWLVSIIKDKLRESPHHKPKEISKSILRDFGVTLNYSQVYRGI 401
                HTC         ++ +    I+  +R  P     E+ K      G  L  S++  G 
Sbjct:   252 TGPHTCSHEYPNDFESE-FAADEIERVVRIQPTLSIAELKKWWKEKTGYELQTSKMRDGK 310

Query:   402 EGAREQLQGSYKEAYNQLPWFCDKLLEANPGSFIKLLID---NDK--KFQRLFISFDASI 456
                 +++ G   +++  +P        +N G  +    D   N     F+ +F SF  SI
Sbjct:   311 LEVIKRVFGDEDQSFRVMPKLISAFHSSN-GLLVDWQYDLFPNPDFASFRGVFWSFSQSI 369

Query:   457 HGFQNGCRPLLFLDSTSLRSKYHEILLTATALDGDDCIFPVAFAIVDTENDDSWNWFLEE 516
              GFQ+ CRPL+ +D+ SL  KY   L+ A+ +D  +  FP+AFA+    + DSW WF  +
Sbjct:   370 EGFQH-CRPLIVVDTKSLNGKYQLKLMIASGVDAANKFFPLAFAVTKEVSTDSWRWFFTK 428

Query:   517 LRSAVSSSRSITFVSDKQKGLMESVLK---IFEN--AHHGYSIYHLLDNFMKNLKGPFHG 571
             +R  V+  + +  +S   + ++  V +   +++   AHH + + HL   F+    G F  
Sbjct:   429 IREKVTQRKDLCLISSPLRDIVAVVNEPGSLWQEPWAHHKFCLNHLRSQFL----GVFRD 484

Query:   572 EGKGSLPVNFLAAACAARLDSFRMSAEQVKKVSSNAFDWMMQIAPEYWTNAAFKGESYQH 631
                 SL      A    + + F      +K+ +  A+ W+ QI    W  A   G  Y  
Sbjct:   485 YNLESLVEQ---AGSTNQKEEFDSYMNDIKEKNPEAWKWLDQIPRHKWALAHDSGLRYGI 541

Query:   632 ITFDVAESYA-----NWIEEVWELPLIQKLERLLCKMTEMINN--RRMNSSGWFTKLIPS 684
             I  D    +A      +        ++   + L     + +++    +N    +T+  P 
Sbjct:   542 IEIDREALFAVCRGFPYCTVAMTGGVMLMFDELRSSFDKSLSSIYSSLNRGVVYTE--PF 599

Query:   685 REQLVKDASRRAHYLKVLFSSDTLFEVQGDSTH---VVDMNKRDCSCLVWKATGLPCHHA 741
              ++L +  +    Y+      D+ F+V   S     +V +N   C+C  +++   PC HA
Sbjct:   600 MDKLEEFMTDSIPYVITQLERDS-FKVSESSEKEEWIVQLNVSTCTCRKFQSYKFPCLHA 658

Query:   742 IAVFNSTGRNVYDYCSSYFTVDSYRSTYSKSINLVEAIFKPPAKEKASVEEAEQVLPPSS 801
             +AVF     N   Y    +TV+ Y  TY+ + + V  +   P  E   V     + PPS 
Sbjct:   659 LAVFEKLKINPLQYVDECYTVEQYCKTYAATFSPVPDVAAWP--EDCRVPT---LFPPSQ 713

Query:   802 TRTPTT 807
               +P T
Sbjct:   714 QLSPNT 719
GO:0005575 "cellular_component" evidence=ND
GO:0008150 "biological_process" evidence=ND
GO:0008270 "zinc ion binding" evidence=IEA
TAIR|locus:2197122 AT1G49920 "AT1G49920" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:1006230722 AT1G64255 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2082420 FRS7 "FAR1-related sequence 7" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query842
cd0641097 cd06410, PB1_UP2, Uncharacterized protein 2 9e-25
pfam1055188 pfam10551, MULE, MULE transposase domain 1e-21
pfam0310867 pfam03108, DBD_Tnp_Mut, MuDR family transposase 2e-16
cd0599281 cd05992, PB1, The PB1 domain is a modular domain m 6e-08
smart0066681 smart00666, PB1, PB1 domain 1e-07
smart0057528 smart00575, ZnF_PMZ, plant mutator transposase zin 9e-07
pfam0056484 pfam00564, PB1, PB1 domain 1e-06
pfam0443438 pfam04434, SWIM, SWIM zinc finger 9e-06
PLN03097 846 PLN03097, FHY3, Protein FAR-RED ELONGATED HYPOCOTY 3e-05
PRK00708209 PRK00708, PRK00708, sec-independent translocase; P 8e-04
pfam00872381 pfam00872, Transposase_mut, Transposase, Mutator f 0.003
>gnl|CDD|99731 cd06410, PB1_UP2, Uncharacterized protein 2 Back     alignment and domain information 
 Score = 98.8 bits (247), Expect = 9e-25
 Identities = 33/98 (33%), Positives = 50/98 (51%), Gaps = 7/98 (7%)

Query: 14  ICQSGGEFV-TKDDGSLSYDGGEANAVAINPETHFGDLKLKLAELLNLEYKSLSVKYFLP 72
           +C  GG  +    DG L Y GGE   V+++    F +L  KL+EL       +++KY LP
Sbjct: 1   LCSYGGRILPRPPDGQLRYVGGETRIVSVDRSISFKELVSKLSELFGAGV-VVTLKYQLP 59

Query: 73  GNKQT-LITICNDKDLKRMFDFHE----GSVTADVFVI 105
                 LI++ ND+DLK M + ++    GS    VF+ 
Sbjct: 60  DEDLDALISVSNDEDLKNMMEEYDRLSGGSARLRVFLF 97

The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. Length = 97
>gnl|CDD|220806 pfam10551, MULE, MULE transposase domain Back     alignment and domain information
>gnl|CDD|190526 pfam03108, DBD_Tnp_Mut, MuDR family transposase Back     alignment and domain information
>gnl|CDD|99716 cd05992, PB1, The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity Back     alignment and domain information
>gnl|CDD|214770 smart00666, PB1, PB1 domain Back     alignment and domain information
>gnl|CDD|128845 smart00575, ZnF_PMZ, plant mutator transposase zinc finger Back     alignment and domain information
>gnl|CDD|215996 pfam00564, PB1, PB1 domain Back     alignment and domain information
>gnl|CDD|218087 pfam04434, SWIM, SWIM zinc finger Back     alignment and domain information
>gnl|CDD|178645 PLN03097, FHY3, Protein FAR-RED ELONGATED HYPOCOTYL 3; Provisional Back     alignment and domain information
>gnl|CDD|234818 PRK00708, PRK00708, sec-independent translocase; Provisional Back     alignment and domain information
>gnl|CDD|216166 pfam00872, Transposase_mut, Transposase, Mutator family Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 842
PLN03097 846 FHY3 Protein FAR-RED ELONGATED HYPOCOTYL 3; Provis 100.0
cd0641097 PB1_UP2 Uncharacterized protein 2. The PB1 domain 99.97
PF1055193 MULE: MULE transposase domain; InterPro: IPR018289 99.85
PF00872381 Transposase_mut: Transposase, Mutator family; Inte 99.79
PF0310867 DBD_Tnp_Mut: MuDR family transposase; InterPro: IP 99.63
COG3328379 Transposase and inactivated derivatives [DNA repli 99.5
smart0066681 PB1 PB1 domain. Phox and Bem1p domain, present in 99.01
smart0057528 ZnF_PMZ plant mutator transposase zinc finger. 98.74
PF08731111 AFT: Transcription factor AFT; InterPro: IPR014842 98.68
cd0599281 PB1 The PB1 domain is a modular domain mediating s 98.46
PF0056484 PB1: PB1 domain; InterPro: IPR000270 The Phox and 98.39
PF0310191 FAR1: FAR1 DNA-binding domain; InterPro: IPR004330 98.31
cd0640782 PB1_NLP A PB1 domain is present in NIN like protei 98.28
PF0443440 SWIM: SWIM zinc finger; InterPro: IPR007527 Zinc f 97.84
cd0639891 PB1_Joka2 The PB1 domain is present in the Nicotia 97.69
cd0640886 PB1_NoxR The PB1 domain is present in the Epichloe 97.68
cd0640579 PB1_Mekk2_3 The PB1 domain is present in the two m 97.56
cd0640680 PB1_P67 A PB1 domain is present in p67 proteins wh 97.54
cd0639782 PB1_UP1 Uncharacterized protein 1. The PB1 domain 97.26
cd0640181 PB1_TFG The PB1 domain found in TFG protein, an on 97.08
cd0640483 PB1_aPKC PB1 domain is an essential modular domain 97.06
cd0640380 PB1_Par6 The PB1 domain is an essential part of Pa 96.92
cd0640287 PB1_p62 The PB1 domain is an essential part of p62 96.83
cd0639681 PB1_NBR1 The PB1 domain is an essential part of NB 96.83
cd0641178 PB1_p51 The PB1 domain is present in the p51 prote 96.66
cd0640986 PB1_MUG70 The MUG70 protein is a product of the me 95.78
PF0009818 zf-CCHC: Zinc knuckle; InterPro: IPR001878 Zinc fi 94.65
PF06782470 UPF0236: Uncharacterised protein family (UPF0236); 94.46
PF13610140 DDE_Tnp_IS240: DDE domain 93.54
PF01610249 DDE_Tnp_ISL3: Transposase; InterPro: IPR002560 Aut 93.19
PF1528840 zf-CCHC_6: Zinc knuckle 92.71
PF1369632 zf-CCHC_2: Zinc knuckle 89.89
PF0310660 WRKY: WRKY DNA -binding domain; InterPro: IPR00365 89.24
COG3316215 Transposase and inactivated derivatives [DNA repli 88.24
PF04684496 BAF1_ABF1: BAF1 / ABF1 chromatin reorganising fact 85.36
PF0450062 FLYWCH: FLYWCH zinc finger domain; InterPro: IPR00 85.35
cd0639992 PB1_P40 The PB1 domain is essential part of the p4 84.92
cd0179975 Hoil1_N Ubiquitin-like domain of HOIL1. HOIL1_N HO 84.23
PF00665120 rve: Integrase core domain; InterPro: IPR001584 In 83.08
cd0179671 DDI1_N DNA damage inducible protein 1 ubiquitin-li 82.59
cd0180774 GDX_N ubiquitin-like domain of GDX. GDX contains a 81.37
cd0181271 BAG1_N Ubiquitin-like domain of BAG1. BAG1_N N-ter 81.35
PF1197672 Rad60-SLD: Ubiquitin-2 like Rad60 SUMO-like; Inter 81.1
PF1456087 Ubiquitin_2: Ubiquitin-like domain; PDB: 1WJN_A 2K 80.68
PHA02517277 putative transposase OrfB; Reviewed 80.43
>PLN03097 FHY3 Protein FAR-RED ELONGATED HYPOCOTYL 3; Provisional Back     alignment and domain information 
Probab=100.00  E-value=9.2e-71  Score=649.91  Aligned_cols=472  Identities=16%  Similarity=0.243  Sum_probs=374.6

Q ss_pred             CCCCCCceeCCHHHHHHHHHHHHHhcceeEEEEeeCcc-------EEEEEec----------------------------
Q 003176          273 SITGVGQEFKSVIEFRDALQRFSIAHRFRYKFKKNETS-------RASGMCA----------------------------  317 (842)
Q Consensus       273 ~~~~vG~~F~s~ee~k~ai~~yAi~~gf~~r~~ks~~~-------r~~~~C~----------------------------  317 (842)
                      ..+.+||+|+|.+|++.+|+.||...||.+|+.++.++       ..+++|+                            
T Consensus        72 ~~P~vGMeF~S~eeA~~FYn~YA~~~GFsVRi~~srrsk~~~~ii~r~fvCsreG~~~~~~~~~~~~~~~~~k~~~~~~~  151 (846)
T PLN03097         72 LEPLSGMEFESHGEAYSFYQEYARSMGFNTAIQNSRRSKTSREFIDAKFACSRYGTKREYDKSFNRPRARQTKQDPENGT  151 (846)
T ss_pred             ccCcCCCeECCHHHHHHHHHHHHhhcCceEEeeceeccCCCCcEEEEEEEEcCCCCCcccccccccccccccccCccccc
Confidence            35789999999999999999999999999998654322       1245554                            


Q ss_pred             ------CCCCceEEEEEEeCCcceEEEEeecCCCccC--CCCCCCCccchhhHHHHHhHhhcCCCCChhHHHHHHHHhcC
Q 003176          318 ------AEGCSWSFYASWVPSERVFKIKKMNETHTCG--ESSKTAHPTKNWLVSIIKDKLRESPHHKPKEISKSILRDFG  389 (842)
Q Consensus       318 ------~~gCpwri~as~~~~~~~w~I~~~~~~HnC~--~~~~~~~~t~~~ia~~~~~~l~~~~~~~~~~I~~~l~~~~g  389 (842)
                            ++||+++|++++.. .+.|+|+.+..+|||+  +.......+++.+....+ .+....++     . .++.+. 
T Consensus       152 ~rR~~tRtGC~A~m~Vk~~~-~gkW~V~~fv~eHNH~L~p~~~~~~~~r~~~~~~~~-~~~~~~~v-----~-~~~~d~-  222 (846)
T PLN03097        152 GRRSCAKTDCKASMHVKRRP-DGKWVIHSFVKEHNHELLPAQAVSEQTRKMYAAMAR-QFAEYKNV-----V-GLKNDS-  222 (846)
T ss_pred             ccccccCCCCceEEEEEEcC-CCeEEEEEEecCCCCCCCCccccchhhhhhHHHHHh-hhhccccc-----c-ccchhh-
Confidence                  34799999998754 4689999999999999  322211111111111000 00000000     0 000000 


Q ss_pred             cccchhhhHHHHHHHHHhhhCCHHHHhhchHHHHHHHHHhCCCcEEEEEecCCcceeEEEEEehhhHHHHHhcCCCeEEe
Q 003176          390 VTLNYSQVYRGIEGAREQLQGSYKEAYNQLPWFCDKLLEANPGSFIKLLIDNDKKFQRLFISFDASIHGFQNGCRPLLFL  469 (842)
Q Consensus       390 ~~~sy~~~~rak~~a~~~~~g~~~esy~~L~~y~~~l~~~NPg~~~~v~~d~d~~f~~lF~a~~~s~~~f~~~~~~vl~i  469 (842)
                        .++  .-+.+...   +.   ......|..||+++++.||+|+|++++|++++++++|||++.|+.+|.+ |+|||.|
T Consensus       223 --~~~--~~~~r~~~---~~---~gD~~~ll~yf~~~q~~nP~Ffy~~qlDe~~~l~niFWaD~~sr~~Y~~-FGDvV~f  291 (846)
T PLN03097        223 --KSS--FDKGRNLG---LE---AGDTKILLDFFTQMQNMNSNFFYAVDLGEDQRLKNLFWVDAKSRHDYGN-FSDVVSF  291 (846)
T ss_pred             --cch--hhHHHhhh---cc---cchHHHHHHHHHHHHhhCCCceEEEEEccCCCeeeEEeccHHHHHHHHh-cCCEEEE
Confidence              001  11111111   11   2245679999999999999999999999999999999999999999999 9999999


Q ss_pred             ccccccccccceEEEEEEecCCCCeEEEEEEEecCCChhhHHHHHHHHHHhhcCCCcEEEEecCchhHHHHHHhhcccCc
Q 003176          470 DSTSLRSKYHEILLTATALDGDDCIFPVAFAIVDTENDDSWNWFLEELRSAVSSSRSITFVSDKQKGLMESVLKIFENAH  549 (842)
Q Consensus       470 D~T~~~~~y~~~Ll~a~g~D~~~~~~plafalv~~Et~es~~WfL~~lk~~~~~~~p~~iisD~~~~l~~AI~~vfP~a~  549 (842)
                      |+||++|+|++||+.++|+|+|+|++++|+||+.+|+.++|.|+|++|+++|++..|.+||||++.+|.+||++|||++.
T Consensus       292 DTTY~tN~y~~Pfa~FvGvNhH~qtvlfGcaLl~dEt~eSf~WLf~tfl~aM~gk~P~tIiTDqd~am~~AI~~VfP~t~  371 (846)
T PLN03097        292 DTTYVRNKYKMPLALFVGVNQHYQFMLLGCALISDESAATYSWLMQTWLRAMGGQAPKVIITDQDKAMKSVISEVFPNAH  371 (846)
T ss_pred             eceeeccccCcEEEEEEEecCCCCeEEEEEEEcccCchhhHHHHHHHHHHHhCCCCCceEEecCCHHHHHHHHHHCCCce
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eEecHHHHHHHHHhhcCCCCCccccCchhHHHHHHHH-hhhHHHHHHHHHHHH-hhChhHHHHHHhh--ccccccccccc
Q 003176          550 HGYSIYHLLDNFMKNLKGPFHGEGKGSLPVNFLAAAC-AARLDSFRMSAEQVK-KVSSNAFDWMMQI--APEYWTNAAFK  625 (842)
Q Consensus       550 h~~C~~Hi~~N~~~~~~~~~~~e~k~~~~~~~~~~~~-a~t~~eFe~~~~~l~-~~~~~~~~yL~~~--~~~~Wa~a~f~  625 (842)
                      |++|+|||++|+.++++..+..  .+.|...|..+++ +.+++||+..|..|. +++...++||..+  .|++|+++|++
T Consensus       372 Hr~C~wHI~~~~~e~L~~~~~~--~~~f~~~f~~cv~~s~t~eEFE~~W~~mi~ky~L~~n~WL~~LY~~RekWapaY~k  449 (846)
T PLN03097        372 HCFFLWHILGKVSENLGQVIKQ--HENFMAKFEKCIYRSWTEEEFGKRWWKILDRFELKEDEWMQSLYEDRKQWVPTYMR  449 (846)
T ss_pred             ehhhHHHHHHHHHHHhhHHhhh--hhHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhcccccHHHHHHHHhHhhhhHHHhc
Confidence            9999999999999999875532  3589999999998 679999999999886 4568999999998  99999999999


Q ss_pred             cCCcccc-ccchhhhhHHHHhhhh--ccchHHHHHHHHHHHHHHHHhhh--------c---------ccccccccCcchH
Q 003176          626 GESYQHI-TFDVAESYANWIEEVW--ELPLIQKLERLLCKMTEMINNRR--------M---------NSSGWFTKLIPSR  685 (842)
Q Consensus       626 ~~~~~~~-TtN~~Es~N~~lk~~r--~lpi~~lve~ir~~l~~~~~~rr--------~---------~~~~~~~~~tp~~  685 (842)
                      +.+++.| ||+++||+|++|++..  ..+|..|++.+...+..+.....        .         ...+.+..|||.+
T Consensus       450 ~~F~agm~sTqRSES~Ns~fk~yv~~~tsL~~Fv~qye~~l~~~~ekE~~aD~~s~~~~P~l~t~~piEkQAs~iYT~~i  529 (846)
T PLN03097        450 DAFLAGMSTVQRSESINAFFDKYVHKKTTVQEFVKQYETILQDRYEEEAKADSDTWNKQPALKSPSPLEKSVSGVYTHAV  529 (846)
T ss_pred             ccccCCcccccccccHHHHHHHHhCcCCCHHHHHHHHHHHHHHHHHHHHHhhhhcccCCcccccccHHHHHHHHHhHHHH
Confidence            8887766 7889999999999864  67888888877665543332111        1         1123478999999


Q ss_pred             HHHHHHHHHhccceEEEEeC----CceEEEEc---CceeEee----cCCccccccchhccCCchhhHHHHHHhcCCC--c
Q 003176          686 EQLVKDASRRAHYLKVLFSS----DTLFEVQG---DSTHVVD----MNKRDCSCLVWKATGLPCHHAIAVFNSTGRN--V  752 (842)
Q Consensus       686 ~~kl~~~~~~a~~~~V~~~~----~~~feV~~---~~~~~V~----l~~~~CsC~~~~~~GiPC~Halav~~~~~~~--~  752 (842)
                      |++||+++..+..|.+....    ..+|.|.+   ...|.|.    ....+|+|++|+..||||+|||.||...++.  |
T Consensus       530 F~kFQ~El~~~~~~~~~~~~~dg~~~~y~V~~~~~~~~~~V~~d~~~~~v~CsC~kFE~~GILCrHaLkVL~~~~v~~IP  609 (846)
T PLN03097        530 FKKFQVEVLGAVACHPKMESQDETSITFRVQDFEKNQDFTVTWNQTKLEVSCICRLFEYKGYLCRHALVVLQMCQLSAIP  609 (846)
T ss_pred             HHHHHHHHHHhhheEEeeeccCCceEEEEEEEecCCCcEEEEEecCCCeEEeeccCeecCccchhhHHHHHhhcCcccCc
Confidence            99999999999888876532    25788865   3456663    2478999999999999999999999999984  9


Q ss_pred             cccccccceecccc
Q 003176          753 YDYCSSYFTVDSYR  766 (842)
Q Consensus       753 ~~yv~~~yt~~~~~  766 (842)
                      ..||.++||.++-.
T Consensus       610 ~~YILkRWTKdAK~  623 (846)
T PLN03097        610 SQYILKRWTKDAKS  623 (846)
T ss_pred             hhhhhhhchhhhhh
Confidence            99999999977654

>cd06410 PB1_UP2 Uncharacterized protein 2 Back     alignment and domain information
>PF10551 MULE: MULE transposase domain; InterPro: IPR018289 This entry represents a domain found in Mutator-like elements (MULE)-encoded tranposases, some of which also contain a zinc-finger motif [, ] Back     alignment and domain information
>PF00872 Transposase_mut: Transposase, Mutator family; InterPro: IPR001207 Autonomous mobile genetic elements such as transposon or insertion sequences (IS) encode an enzyme, transposase, that is required for excising and inserting the mobile element Back     alignment and domain information
>PF03108 DBD_Tnp_Mut: MuDR family transposase; InterPro: IPR004332 The plant MuDR transposase domain is present in plant proteins that are presumed to be the transposases for Mutator transposable elements [, ] Back     alignment and domain information
>COG3328 Transposase and inactivated derivatives [DNA replication, recombination, and repair] Back     alignment and domain information
>smart00666 PB1 PB1 domain Back     alignment and domain information
>smart00575 ZnF_PMZ plant mutator transposase zinc finger Back     alignment and domain information
>PF08731 AFT: Transcription factor AFT; InterPro: IPR014842 AFT (activator of iron transcription) is an iron regulated transcriptional activator that regulates the expression of genes involved in iron homeostasis Back     alignment and domain information
>cd05992 PB1 The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity Back     alignment and domain information
>PF00564 PB1: PB1 domain; InterPro: IPR000270 The Phox and Bem1p domain, is present in many eukaryotic cytoplasmic signalling proteins Back     alignment and domain information
>PF03101 FAR1: FAR1 DNA-binding domain; InterPro: IPR004330 Phytochrome A is the primary photoreceptor for mediating various far-red light-induced responses in higher plants Back     alignment and domain information
>cd06407 PB1_NLP A PB1 domain is present in NIN like proteins (NLP), a key enzyme in a process of establishment of symbiosis betweeen legumes and nitrogen fixing bacteria (Rhizobium) Back     alignment and domain information
>PF04434 SWIM: SWIM zinc finger; InterPro: IPR007527 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule Back     alignment and domain information
>cd06398 PB1_Joka2 The PB1 domain is present in the Nicotiana plumbaginifolia Joka2 protein which interacts with sulfur stress inducible UP9 protein Back     alignment and domain information
>cd06408 PB1_NoxR The PB1 domain is present in the Epichloe festucae NoxR protein (NADPH oxidase regulator), a key regulator of NADPH oxidase isoform, NoxA Back     alignment and domain information
>cd06405 PB1_Mekk2_3 The PB1 domain is present in the two mitogen-activated protein kinase kinases MEKK2 and MEKK3 which are two members of the signaling kinase cascade involved in angiogenesis and early cardiovascular development Back     alignment and domain information
>cd06406 PB1_P67 A PB1 domain is present in p67 proteins which forms a signaling complex with p40, a crucial step for activation of NADPH oxidase during phagocytosis Back     alignment and domain information
>cd06397 PB1_UP1 Uncharacterized protein 1 Back     alignment and domain information
>cd06401 PB1_TFG The PB1 domain found in TFG protein, an oncogenic gene product and fusion partner to nerve growth factor tyrosine kinase receptor TrkA and to the tyrosine kinase ALK Back     alignment and domain information
>cd06404 PB1_aPKC PB1 domain is an essential modular domain of the atypical protein kinase C (aPKC) which in complex with Par6 and Par3 proteins is crucial for establishment of apical-basal polarity of animal cells Back     alignment and domain information
>cd06403 PB1_Par6 The PB1 domain is an essential part of Par6 protein which in complex with Par3 and aPKC proteins is crucial for establishment of apical-basal polarity of animal cells Back     alignment and domain information
>cd06402 PB1_p62 The PB1 domain is an essential part of p62 scaffold protein (alias sequestosome 1,SQSTM) involved in cell signaling, receptor internalization, and protein turnover Back     alignment and domain information
>cd06396 PB1_NBR1 The PB1 domain is an essential part of NBR1 protein, next to BRCA1, a scaffold protein mediating specific protein-protein interaction with both titin protein kinase and with another scaffold protein p62 Back     alignment and domain information
>cd06411 PB1_p51 The PB1 domain is present in the p51 protein, a homolog of the p67 protein Back     alignment and domain information
>cd06409 PB1_MUG70 The MUG70 protein is a product of the meiotically up-regulated gene 70 which has a role in meiosis and harbors a PB1 domain Back     alignment and domain information
>PF00098 zf-CCHC: Zinc knuckle; InterPro: IPR001878 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule Back     alignment and domain information
>PF06782 UPF0236: Uncharacterised protein family (UPF0236); InterPro: IPR009620 This is a group of proteins of unknown function Back     alignment and domain information
>PF13610 DDE_Tnp_IS240: DDE domain Back     alignment and domain information
>PF01610 DDE_Tnp_ISL3: Transposase; InterPro: IPR002560 Autonomous mobile genetic elements such as transposon or insertion sequences (IS) encode an enzyme, transposase, that is required for excising and inserting the mobile element Back     alignment and domain information
>PF15288 zf-CCHC_6: Zinc knuckle Back     alignment and domain information
>PF13696 zf-CCHC_2: Zinc knuckle Back     alignment and domain information
>PF03106 WRKY: WRKY DNA -binding domain; InterPro: IPR003657 The WRKY domain is a 60 amino acid region that is defined by the conserved amino acid sequence WRKYGQK at its N-terminal end, together with a novel zinc-finger- like motif Back     alignment and domain information
>COG3316 Transposase and inactivated derivatives [DNA replication, recombination, and repair] Back     alignment and domain information
>PF04684 BAF1_ABF1: BAF1 / ABF1 chromatin reorganising factor; InterPro: IPR006774 ABF1 is a sequence-specific DNA binding protein involved in transcription activation, gene silencing and initiation of DNA replication Back     alignment and domain information
>PF04500 FLYWCH: FLYWCH zinc finger domain; InterPro: IPR007588 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule Back     alignment and domain information
>cd06399 PB1_P40 The PB1 domain is essential part of the p40 adaptor protein which plays an important role in activating phagocyte NADPH oxidase during phagocytosis Back     alignment and domain information
>cd01799 Hoil1_N Ubiquitin-like domain of HOIL1 Back     alignment and domain information
>PF00665 rve: Integrase core domain; InterPro: IPR001584 Integrase comprises three domains capable of folding independently and whose three-dimensional structures are known Back     alignment and domain information
>cd01796 DDI1_N DNA damage inducible protein 1 ubiquitin-like domain Back     alignment and domain information
>cd01807 GDX_N ubiquitin-like domain of GDX Back     alignment and domain information
>cd01812 BAG1_N Ubiquitin-like domain of BAG1 Back     alignment and domain information
>PF11976 Rad60-SLD: Ubiquitin-2 like Rad60 SUMO-like; InterPro: IPR022617 This entry includes small ubiquitin-related modifier (SUMO) proteins Back     alignment and domain information
>PF14560 Ubiquitin_2: Ubiquitin-like domain; PDB: 1WJN_A 2KJ6_A 2KJR_A 1V6E_A 1T0Y_A Back     alignment and domain information
>PHA02517 putative transposase OrfB; Reviewed Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query842
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-07
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 5e-05
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 7e-05
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
 Score = 53.3 bits (127), Expect = 3e-07
 Identities = 84/642 (13%), Positives = 174/642 (27%), Gaps = 195/642 (30%)

Query: 223 MRKDYLTESD-DDMEEERDTSAGLD---------GTNGALDVASEFNNLSPEEMVAMWKD 272
           M K  L++ + D +   +D  +G                     E   ++ + +++  K 
Sbjct: 41  MPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKT 100

Query: 273 SITGVGQEFKSVIEFRDAL----QRFSIAHRFRYKFKKN------ETSRAS-----GM-- 315
                    +  IE RD L    Q F+  +  R +          E   A      G+  
Sbjct: 101 EQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLG 160

Query: 316 C-----AAEGCS-------WSFYASWV-------PSERVFKIKKMNETHTCGESSKTAHP 356
                 A + C          F   W+       P   +  ++K+        +S++ H 
Sbjct: 161 SGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHS 220

Query: 357 TKNWL-VSIIKDKLRESPHHKPKEISKSILRD---------FG------VTLNYSQVYRG 400
           +   L +  I+ +LR     KP E    +L +         F       +T  + QV   
Sbjct: 221 SNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDF 280

Query: 401 IEGAR------EQLQGSYKEAYNQ---LPWF---CDKL-LEA---NP---GSFIKLLIDN 441
           +  A       +    +      +   L +       L  E    NP       + + D 
Sbjct: 281 LSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDG 340

Query: 442 DKKFQR-LFISFDASIHGFQNGCRPLLFLDSTSLRSKYHEILLTATALDGDDCIFPVAFA 500
              +     ++ D      ++    L  L+    R  +  +            +FP    
Sbjct: 341 LATWDNWKHVNCDKLTTIIESS---LNVLEPAEYRKMFDRL-----------SVFP---- 382

Query: 501 IVDTENDDSW--NWFLEELRSAVSSSRSITFVSD-KQKGLMESVLKIFENAHHGYSIYHL 557
                   +      L  +   V  S  +  V+   +  L+E      +      SI  +
Sbjct: 383 ------PSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEK-----QPKESTISIPSI 431

Query: 558 LDNFMKNLKGPFHGEGKGSLPVNFLAAACAARLDSFRMSAEQVKKVSSNAFDWMMQIAPE 617
                         E + +L  +         +D + +     K   S+  D +     +
Sbjct: 432 YLELKV------KLENEYALHRSI--------VDHYNIP----KTFDSD--DLIPPYLDQ 471

Query: 618 YWTNAAFKGESYQHITFDVAESYANWIEEVWELPLI--------QKLER--LLCKMTEMI 667
           Y+         Y HI   +        E +    ++        QK+         +  I
Sbjct: 472 YF---------YSHIGHHLKN--IEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSI 520

Query: 668 NN---RRMNSSGWFTKLIPSREQLVKDASRRAHYLKVLFSSDTLFEVQGDSTHVVDMNKR 724
            N   +      +     P  E+LV         L  L              +++     
Sbjct: 521 LNTLQQLKFYKPYICDNDPKYERLVNA------ILDFLPKI---------EENLI---CS 562

Query: 725 DCSCLVWKATGLPCHHAIAVFNSTGRNVYDYCSSYFTVDSYR 766
             + L+           IA+       +++        ++++
Sbjct: 563 KYTDLL----------RIALMAEDE-AIFE--------EAHK 585
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query842
2cu1_A103 Mitogen-activated protein kinase kinase kinase 2; 99.01
1vd2_A89 Protein kinase C, IOTA type; PB1 domain, OPCA moti 98.08
2jrh_A94 Mitogen-activated protein kinase kinase kinase 3; 97.69
1oey_A83 P67-PHOX, neutrophil cytosol factor 2; immune syst 97.64
2c60_A111 Human mitogen-activated protein kinase kinase kina 97.59
2npt_B100 Mitogen-activated protein kinase kinase kinase 2; 97.58
2kkc_A102 Sequestosome-1; P62, PB1, autophagy, ubiquitin-pro 97.41
1wmh_B86 Partitioning defective-6 homolog alpha; kinase, PB 97.33
1q1o_A98 Cell division control protein 24; PB1 domain, PCCR 97.26
2ktr_A117 Sequestosome-1; autophagy, NF-KB signaling, HOMO-o 97.17
1pqs_A77 Cell division control protein 24; alpha and beta p 96.77
1ip9_A85 BEM1 protein; ubiquitin alpha/beta roll, signaling 95.28
2bkf_A87 Zinc-finger protein NBR1 (NEXT to breast cancer 1; 94.06
1wj6_A101 KIAA0049 protein, RSGI RUH-024; PB1 domain, protei 92.17
1nc8_A29 Nucleocapsid protein; HIV-2, RNA recognition, zinc 91.69
1oey_J107 P40-PHOX, neutrophil cytosol factor 4; immune syst 89.47
1a6b_B40 Momulv, zinc finger protein NCP10; nucleocapsid pr 88.64
2ayd_A76 WRKY transcription factor 1; beta strands, zinc fi 88.62
1dsq_A26 Nucleic acid binding protein P14; CCHC type zinc f 87.97
1wj2_A78 Probable WRKY transcription factor 4; DNA-binding 87.79
3hot_A345 Transposable element mariner, complete CDS; protei 87.37
1u6p_A56 GAG polyprotein; MLV, A-minor K-turn, stem loop, b 85.29
2ec7_A49 GAG polyprotein (PR55GAG); nucleocapsid protein, H 83.93
>2cu1_A Mitogen-activated protein kinase kinase kinase 2; PB1 domain, MAPK/ERK kinase kinase 2, MEK kinase 2, MEKK 2, signaling protein; NMR {Homo sapiens} SCOP: d.15.2.2 Back     alignment and structure
Probab=99.01  E-value=9.6e-10  Score=93.94  Aligned_cols=69  Identities=17%  Similarity=0.354  Sum_probs=60.8

Q ss_pred             cCceEEEEeCCCCChHHHHHHHHHHhCCCCcceEEEEecCCCCCceEeecChHHHHHHHhccCCc---eeEEEEEecc
Q 003176           33 GGEANAVAINPETHFGDLKLKLAELLNLEYKSLSVKYFLPGNKQTLITICNDKDLKRMFDFHEGS---VTADVFVIGT  107 (842)
Q Consensus        33 gg~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~y~l~~~~~~l~~~~~d~dl~~m~~~~~~~---~~~~v~~~~~  107 (842)
                      |||+|||.++|.++|+||.+|+.+.||   .++.|.|+   |.+.||+|.+.|||++.+|..|.+   ..++|++.+-
T Consensus        16 ~GEkRIi~f~RPv~f~eL~~Kv~~~fG---q~ldL~y~---n~EllIpl~sQeDLDkaIellDrss~~kSLrIlL~~~   87 (103)
T 2cu1_A           16 RGEKRILQFPRPVKLEDLRSKAKIAFG---QSMDLHYT---NNELVIPLTTQDDLDKAVELLDRSIHMKSLKILLVIN   87 (103)
T ss_dssp             TTEEEEEEEESSCCHHHHHHHHHHHHS---SCEEEEEC---SSSSCEECCSHHHHHHHHHHHHHCSSCCSEEEEEEEC
T ss_pred             cCeEEEEeccCCccHHHHHHHHHHHhC---CeeeEEEe---cceEEEeccCHHHHHHHHHHHccCCcccceEEEEecC
Confidence            899999999999999999999999999   68899999   779999999999999988854432   4578877763
>1vd2_A Protein kinase C, IOTA type; PB1 domain, OPCA motif, APKC, ZIP/P62, MEK5, molecular recognition, transferase; NMR {Homo sapiens} SCOP: d.15.2.2 PDB: 1wmh_A Back     alignment and structure
>2jrh_A Mitogen-activated protein kinase kinase kinase 3; kinase signaling domain, transferase; NMR {Homo sapiens} PDB: 2pph_A Back     alignment and structure
>1oey_A P67-PHOX, neutrophil cytosol factor 2; immune system, PB1 heterodimer/complex, NADPH oxidase, PB1 D heterodimerization; 2.0A {Homo sapiens} SCOP: d.15.2.2 Back     alignment and structure
>2c60_A Human mitogen-activated protein kinase kinase kinase 3 isoform 2; MAP3K3, MAP/ERK kinase kinase 3, MAPKKK3, MEKK3, serine threonine phosphorylation; HET: MSE; 1.25A {Homo sapiens} SCOP: d.15.2.2 PDB: 2o2v_B Back     alignment and structure
>2npt_B Mitogen-activated protein kinase kinase kinase 2; MAP2K5, MEK5, MKK PRKMK5, MAP kinase kinase 5, PHOX, PHOX-domain; 1.75A {Homo sapiens} SCOP: d.15.2.2 Back     alignment and structure
>2kkc_A Sequestosome-1; P62, PB1, autophagy, ubiquitin-proteasome system, NF-KB signaling, alternative splicing, apoptosis, cytoplasm, differentiation; NMR {Rattus norvegicus} PDB: 2ktr_B Back     alignment and structure
>1wmh_B Partitioning defective-6 homolog alpha; kinase, PB1 domain, OPCA motif, APKC, cell polarity, transferase/cell cycle complex; 1.50A {Homo sapiens} SCOP: d.15.2.2 Back     alignment and structure
>1q1o_A Cell division control protein 24; PB1 domain, PCCR, PC motif, OPCA motif, yeast, cell polarity, protein-protein interaction; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 2kfj_A 2kfk_B Back     alignment and structure
>2ktr_A Sequestosome-1; autophagy, NF-KB signaling, HOMO-oligomer, PB1 dimer, signaling protein, transport protein; NMR {Rattus norvegicus} Back     alignment and structure
>1pqs_A Cell division control protein 24; alpha and beta protein, cell cycle; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 1tz1_A Back     alignment and structure
>1ip9_A BEM1 protein; ubiquitin alpha/beta roll, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 1ipg_A 2kfk_A Back     alignment and structure
>2bkf_A Zinc-finger protein NBR1 (NEXT to breast cancer 1; PB1 domain, interaction domain, Z finger; 1.56A {Homo sapiens} SCOP: d.15.2.2 PDB: 2g4s_A Back     alignment and structure
>1wj6_A KIAA0049 protein, RSGI RUH-024; PB1 domain, protein binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Homo sapiens} SCOP: d.15.2.2 Back     alignment and structure
>1nc8_A Nucleocapsid protein; HIV-2, RNA recognition, zinc finger, viral protein; NMR {Human immunodeficiency virus 2} SCOP: g.40.1.1 PDB: 2di2_A Back     alignment and structure
>1oey_J P40-PHOX, neutrophil cytosol factor 4; immune system, PB1 heterodimer/complex, NADPH oxidase, PB1 D heterodimerization; 2.0A {Homo sapiens} SCOP: d.15.2.2 Back     alignment and structure
>1a6b_B Momulv, zinc finger protein NCP10; nucleocapsid protein, intercalation, nucleic acid, retrovirus, viral protein/DNA complex; HET: DNA; NMR {Synthetic} SCOP: g.40.1.1 Back     alignment and structure
>2ayd_A WRKY transcription factor 1; beta strands, zinc finger; 1.60A {Arabidopsis thaliana} Back     alignment and structure
>1dsq_A Nucleic acid binding protein P14; CCHC type zinc finger, virus/viral protein; NMR {Mouse mammary tumor virus} SCOP: g.40.1.1 Back     alignment and structure
>1wj2_A Probable WRKY transcription factor 4; DNA-binding domain, zinc-binding, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.79.1.1 PDB: 2lex_A* Back     alignment and structure
>3hot_A Transposable element mariner, complete CDS; protein-DNA complex, synaptic complex, transposase, inverted DNA, DNA binding protein-DNA complex; HET: 5IU; 3.25A {Drosophila mauritiana} PDB: 3hos_A* Back     alignment and structure
>1u6p_A GAG polyprotein; MLV, A-minor K-turn, stem loop, bulge, G-U mismatch, G-A MIS U mismatch, A-C mismatch, zinc finger, NC, viral protein-RN; HET: AP7; NMR {Moloney murine leukemia virus} SCOP: g.40.1.1 PDB: 1wwd_A 1wwe_A 1wwf_A 1wwg_A Back     alignment and structure
>2ec7_A GAG polyprotein (PR55GAG); nucleocapsid protein, HIV-2, RNA recognition, zinc finger, viral protein; NMR {Human immunodeficiency virus type 2} SCOP: g.40.1.1 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query842
d1ip9a_85 Bud emergence mediator Bemp1 {Baker's yeast (Sacch 98.17
d2c60a180 Mitogen-activated protein kinase kinase kinase 3, 97.72
d2nptb182 Mitogen-activated protein kinase kinase kinase 2, 97.61
d2bkfa185 Next to BRCA1 gene 1 protein, NBR1 (KIAA0049) {Hum 96.9
d1oeya_82 Neutrophil cytosol factor 2 (p67phox component of 96.33
d1nc8a_29 HIV nucleocapsid {Human immunodeficiency virus typ 94.17
d1wmha_83 Protein kinase C, iota type {Human (Homo sapiens) 93.03
d1wj2a_71 WRKY DNA-binding protein 4 {Thale cress (Arabidops 91.97
d1oeyj_105 Neutrophil cytosol factor 4 (p40phox component of 89.61
d1pqsa_77 Cell division control protein 24, CDC24, C-termina 88.41
d2npta1105 Mitogen activated protein kinase kinase 5, Map2k5 88.03
d2exfa142 HIV nucleocapsid {Human immunodeficiency virus typ 86.84
d2exfa142 HIV nucleocapsid {Human immunodeficiency virus typ 81.67
>d1ip9a_ d.15.2.2 (A:) Bud emergence mediator Bemp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: CAD & PB1 domains
family: PB1 domain
domain: Bud emergence mediator Bemp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.17  E-value=2.7e-06  Score=71.16  Aligned_cols=59  Identities=12%  Similarity=0.151  Sum_probs=52.2

Q ss_pred             cCceEEEEeCCCCChHHHHHHHHHHhCCCCcceEEEEecCCCCCceEeecChHHHHHHHhccC
Q 003176           33 GGEANAVAINPETHFGDLKLKLAELLNLEYKSLSVKYFLPGNKQTLITICNDKDLKRMFDFHE   95 (842)
Q Consensus        33 gg~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~y~l~~~~~~l~~~~~d~dl~~m~~~~~   95 (842)
                      ||+++.+.|+.+++|.||..++.+.|++  +.+.|||+  .|+.-++++.+|+||+++|+...
T Consensus        20 ~~D~~~~~l~~~it~~dL~~kI~~rf~~--~~~~lkY~--Dedgd~v~i~sD~Dl~~ai~~~~   78 (85)
T d1ip9a_          20 KDDIFALMLKGDTTYKELRSKIAPRIDT--DNFKLQTK--LFDGSGEEIKTDSQVSNIIQAKL   78 (85)
T ss_dssp             TTCCEEEEECSCCCHHHHHHHHHHHHTS--SCEEEEEC--CSSSCCSCCCSHHHHHHHHHTTC
T ss_pred             CCcEEEEEeCCCCCHHHHHHHHHHHhCC--CceEEEEE--cCCCCEEEEeCHHHHHHHHHhcC
Confidence            6889999999999999999999999975  46999996  55577789999999999998554
>d2c60a1 d.15.2.2 (A:43-122) Mitogen-activated protein kinase kinase kinase 3, MEKK 3 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2nptb1 d.15.2.2 (B:42-123) Mitogen-activated protein kinase kinase kinase 2, MEKK 2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2bkfa1 d.15.2.2 (A:1-85) Next to BRCA1 gene 1 protein, NBR1 (KIAA0049) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1oeya_ d.15.2.2 (A:) Neutrophil cytosol factor 2 (p67phox component of NADPH oxidase) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1nc8a_ g.40.1.1 (A:) HIV nucleocapsid {Human immunodeficiency virus type 2 [TaxId: 11709]} Back     information, alignment and structure
>d1wmha_ d.15.2.2 (A:) Protein kinase C, iota type {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wj2a_ g.79.1.1 (A:) WRKY DNA-binding protein 4 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1oeyj_ d.15.2.2 (J:) Neutrophil cytosol factor 4 (p40phox component of NADPH oxidase) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1pqsa_ d.15.2.2 (A:) Cell division control protein 24, CDC24, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2npta1 d.15.2.2 (A:4-108) Mitogen activated protein kinase kinase 5, Map2k5 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2exfa1 g.40.1.1 (A:12-53) HIV nucleocapsid {Human immunodeficiency virus type 1, different isolates [TaxId: 11676]} Back     information, alignment and structure
>d2exfa1 g.40.1.1 (A:12-53) HIV nucleocapsid {Human immunodeficiency virus type 1, different isolates [TaxId: 11676]} Back     information, alignment and structure