Citrus Sinensis ID: 003181

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-
MATPAAAGGGWYRARVKAVPSGDSLVITALSNPNPGPPREKTLTLSSIITPRLARRGGLDEPFAWDSREFLRKLCIGKEVTFRVDYAVPNIGREFGTVILGDKNVAMLVVSEGWAKVKEQGSQKGEASPFLAELLRLEEQAKLQGLGRWSKVPGAAEASIRNLPPSAIGDSSNFNAMALLDANKGRPMQGIVEQARDGSTLRVYLLPEFQFVQVFVAGIQAPAVARRPAAIVDTDTEETNGDVSAAEAVAPLNSAQRLAASTASAGQQSTDEPFALDAKYFTEMRVLNREVRIVLEGVDKFKNLIGSVFYPDGETAKDLAMELVENGLAKYIEWSANMMEEDAKRRLKAADLQAKKTRLRMWTNYVPPQSNSKAIHDQNFTGKVVEVVSGDCIIVADDSIPYGNALAERRVNLSSIRCPKIGNPRKDEKPAAYAREAREFLRTRLIGRQVNVQMEYSRKVVVEAAPVAAGAKGPAGTKGPAGTKGQAAAKGPAGEESVGATETRIIDFGSIFLLSPIKGEGDDASAVAQSNAAGQPAGVNVAELVVSRGLGNVINHRDFEERSNYYDALLAAEARAKAGKKGCYSSKEPPVMHIQDLTMAPVKKARDFLPFLQRSRRIPAVVEYVLSGHRFKVLIPKETCSIAFSFSGVRCPGRNERYSNEALLLMRQKILQRDVEIEVETVDRTGTFLGSLWESRTNVAVILLEAGLAKLQTSFGSDRIPDSHLLEQAEKSAKSQKLKIWENYVEGEEVSNGAAVEGKQKEVLKVVVTEILGGGKFYVQQVGDQKVASVQQQLASLNLQEAPVIGAFNPKKGEIVLAQFSADNSWNRAMDNCLLSSSLLQ
ccccccccccEEEEEEEEEccccEEEEEEccccccccccEEEEEEEEcccccccccccccccHHHHHHHHHHHHHcccEEEEEEEEEccccccEEEEEEEccccHHHHHHHHccEEEEEcccccccccHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccHHHHHHHccccccccEEEEcccccEEEEEEccccEEEEEEEEEEEccccccccccccccccccccccccccccccccHHHHHHHcccccccccccccHHHHHHHHHHHHHHcccEEEEEEEEEcccccEEEEEEEccccccccHHHHHHHcccEEEEEcccccccHHHHHHHHHHHHHHHHcccccccccccccccccccccccEEEEEEEEEEccEEEEEccccccccccccEEEEEccccccccccccccccccHHHHHHHHHHHHHccccEEEEEEEEEEccccccccccccccccccccccccccccccccccccccccccccEEEEccccEEEcccccccccccHHHHHcccccccccccHHHHHHHcccEEEEEccccccccHHHHHHHHHHHHHHHccccccccccccccEEEccccHHHHHHHHccccccccccccEEEEEEEcccEEEEEEcccccEEEEEEEEEcccccccccHHHHHHHHHHHHcccEEEEEEEEEcccccEEEEEEcccccHHHHHHHcccEEEEEEccccccccHHHHHHHHHHHHHHccccccccccccccccccccccccEEEEEEEEEEEEcccEEEEEEcccHHHHHHHHHHHHHHHcccccccccccccccEEEEEEcccccEEEEEEEEEccccccc
cccccccccccEEEEEEEEEcccEEEEEEcccccccccccEEEEEEEEccccccccccccccHHHHHHHHHHHHHcccEEEEEEEEEccccccEEEEEEEccccHHHHHHHccccEEEEcccccccccHHHHHHHHHHHHHHHcccccccccccccccccccccccccccHHHHcHHHHHHHHccccccEEEEEEEcccEEEEEEccccEEEEEEEEEEEccccccccccccccccccccccccccccccccHHHHHHHHHccccccccccccHHHHHHHHHHHHHHcccEEEEEEEccccccEEEEEEcccccccHHHHHHHHHccccEEEcccHcccccHHHHHHHHHHHHHHHHHHccHcccccccccHHHHcccccEEEEEEEEcccEEEEEEcccccccccccEEEEEcccccccccccccccccccHHHHHHHHHHHHHcccEEEEEEEEEcccccccccEEccccccccccHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHHcccccccccccccccccccccccHHHHHHHccccEEEEccccHcccHHHHHHHHHHHHHHHHcccccccccccccEEEccccccHHHHHHHHHHHHHcccccEEEEEEccccEEEEEEccccEEEEEEEEcEEcccccccHHHHHHHHHHHHHHcccEEEEEEEccccccEEEEEEEcccHHHHHHHHHcccEEcccccHHccccHHHHHHHHHHHHHHHHccHHcccccHHHcccccHHHccccccEEEEEEEccccEEEEEEccccHHHHHHHHHHHHHHcccccccccccccccEEEEEEcccccHHHHHHEEccccHccc
matpaaagggwyrarvkavpsgdSLVITAlsnpnpgpprektltlssiitprlarrggldepfawDSREFLRKLCigkevtfrvdyavpnigrefgtvilgDKNVAMLVVSEGWAKVkeqgsqkgeasPFLAELLRLEEQAKLQGlgrwskvpgaaeasirnlppsaigdssnfNAMALLdankgrpmqgiveqardgstlrvyllpefQFVQVFVAGIqapavarrpaaivdtdteetngdvsaaeavAPLNSAQRLAASTasagqqstdepfalDAKYFTEMRVLNREVRIVLEGVDKFKNLIgsvfypdgetAKDLAMELVENGLAKYIEWSANMMEEDAKRRLKAADLQAKKTRLRmwtnyvppqsnskaihdqnftgKVVEVVSGdciivaddsipygNALAERRVNlssircpkignprkdekpAAYAREAREFLRTRLIGRQVNVQMEYSRKVVVeaapvaagakgpagtkgpagtkgqaaakgpageesvgatetriIDFGSifllspikgegddasavaqsnaagqpagVNVAELVVSRglgnvinhrdfeerSNYYDALLAAEARAKAgkkgcysskeppvmhiqdltmapvkkardflpflqrsrriPAVVEYVLSGhrfkvlipketcsiafsfsgvrcpgrnerySNEALLLMRQKILQRDVEIEVETVDRTGTFLGSLWESRTNVAVILLEAGLAKLQtsfgsdripdshLLEQAEKSAKSQKLKIWENYvegeevsngaavegkQKEVLKVVVTEILGGGKFYVQQVGDQKVASVQQQLASLnlqeapvigafnpkkGEIVLAQFSadnswnramdncllsssllq
matpaaagggwyrARVKAVPSGDSLVITAlsnpnpgpprekTLTLSSIItprlarrggldepfawdSREFLRKLCIGKEVTFRVDYAVPNIGREFGTVILGDKNVAMLVVSEGWAKVkeqgsqkgeASPFLAELLRLEEQAKLQGLGRWSKVPGAAEASIRNLPPSAIGDSSNFNAMALLDANKGRPMQGIVEQARDGSTLRVYLLPEFQFVQVFVAGIQAPAVARRPAAIVDTDTEETNGDVSAAEAVAPLNSAQRLAAStasagqqstdepFALDAKYFTEMRVLNREVRIVLEGVDKFKNLIGSVFYPDGETAKDLAMELVENGLAKYIEWSANMMEEDAKRRLKAADLQAKKTRLRMWTNYVppqsnskaihdqNFTGKVVEVVSGDCIIVADDSIPYGNALAErrvnlssircpkignprkdekpaaYAREAREFLrtrligrqvnvqmeySRKVVVEAApvaagakgpagtkgpagtKGQAAAKGPAGEESVGATETRIIDFGSIFLLSPIKGEGDDASAVAQSNAAGQPAGVNVAELVVSRGLGNVINHRDFEERSNYYDALLAAEARAKAGKKGCYSSKEPPVMHIQDLTMAPVKKARDFLpflqrsrriPAVVEYVLSGHRFKVLIPKETCSIAfsfsgvrcpgrnERYSNEALLLMRQKILQRDVEIEVETVDRTGtflgslwesrTNVAVILLEAGLAKLQTSFGSDRIPDSHLLEQAEKSAKSQKLKIWENYVEGEevsngaavegkqkeVLKVVVTEILGGGKFYVQQVGDQKVASVQQQLASLNLQEAPVIGAFNPKKGEIVLAQFSADNSWNRAMDNCLLSSSLLQ
MATPAAAGGGWYRARVKAVPSGDSLVITALSNPNPGPPREKTLTLSSIITPRLARRGGLDEPFAWDSREFLRKLCIGKEVTFRVDYAVPNIGREFGTVILGDKNVAMLVVSEGWAKVKEQGSQKGEASPFLAELLRLEEQAKLQGLGRWSKVPGAAEASIRNLPPSAIGDSSNFNAMALLDANKGRPMQGIVEQARDGSTLRVYLLPEFQFVQVFVAGiqapavarrpaaivDTDTEETNGDVSAAEAVAPLNSAQRLaastasagqqstDEPFALDAKYFTEMRVLNREVRIVLEGVDKFKNLIGSVFYPDGETAKDLAMELVENGLAKYIEWSANMMEEDAKRRLKAADLQAKKTRLRMWTNYVPPQSNSKAIHDQNFTGKVVEVVSGDCIIVADDSIPYGNALAERRVNLSSIRCPKIGNPRKDEKPAAYAREAREFLRTRLIGRQVNVQMEYSRKVVVEaapvaagakgpagtkgpagtkgqaaakgpagEESVGATETRIIDFGSIFLLSPIKGEGDDASAVAQSNAAGQPAGVNVAELVVSRGLGNVINHRDFEERSNYYDallaaearakagkkgCYSSKEPPVMHIQDLTMAPVKKARDFLPFLQRSRRIPAVVEYVLSGHRFKVLIPKETCSIAFSFSGVRCPGRNERYSNEALLLMRQKILQRDVEIEVETVDRTGTFLGSLWESRTNVAVILLEAGLAKLQTSFGSDRIPDSHLLEQAEKSAKSQKLKIWENYVEGEEVSNGAAVEGKQKEVLKVVVTEILGGGKFYVQQVGDQKVASVQQQLASLNLQEAPVIGAFNPKKGEIVLAQFSADNSWNRAMDNCLLSSSLLQ
*********GWYRARVKAVP**DSLVIT****************LSSIITPRLARRGGLDEPFAWDSREFLRKLCIGKEVTFRVDYAVPNIGREFGTVILGDKNVAMLVVSEGWAKV*************LAELLRL*****LQGLGRW*****************************************IVEQARDGSTLRVYLLPEFQFVQVFVAGIQAPAVARRPAAIV*****************************************FALDAKYFTEMRVLNREVRIVLEGVDKFKNLIGSVFYPDGETAKDLAMELVENGLAKYIEWSANM*****************KTRLRMWTNYVP******AIHDQNFTGKVVEVVSGDCIIVADDSIPYGNALAERRVNLSSIRCP****************EAREFLRTRLIGRQVNVQMEYSRKVVVEAA************************************ETRIIDFGSIFLLSPIK******************AGVNVAELVVSRGLGNVINHRDFEERSNYYDALLAAEARAK****GCY******VMHIQDLTMAPVKKARDFLPFLQRSRRIPAVVEYVLSGHRFKVLIPKETCSIAFSFSGVRCPGRNERYSNEALLLMRQKILQRDVEIEVETVDRTGTFLGSLWESRTNVAVILLEAGLAKLQTSF**********************LKIWENYVEGEEVSNGAAVEGKQKEVLKVVVTEILGGGKFYVQQVGDQKVASVQQQLASLNLQEAPVIGAFNPKKGEIVLAQFSADNSWNRAMDNCL*******
**********WYRARVKAVPSGDSLVITALSNPNPGPPREKTLTLSSIITPRLARRGGLDEPFAWDSREFLRKLCIGKEVTFRVDYAVPNIGREFGTVILGDKNVAMLVVSEGWAKVKEQGSQKGEASPFLAELLRLEEQAKLQGLGRWSKVPGAAEASIRNLPPSAIGDSSNFNAMALLDANKGRPMQGIVEQARDGSTLRVYLLPEFQFVQVFVAGIQAPAVARRPAAIVDTDTEETNGDVSAAEAVAPLNSAQRL*************EPFALDAKYFTEMRVLNREVRIVLEGVDKFKNLIGSVFYPDGETAKDLAMELVENGLAKYIEWSANMMEEDAKRRLKAADLQAKKTRLRMWTNY****************GKVVEVVSGDCIIVADDSIPYGNALAERRVNLS******************YAREAREFLRTRLIGRQVNVQMEYSRKVVVEAAPVAAGAKGPAGTKGPAGTKGQAAAKGPAGEESVGATETRIIDFGSIFL*******************AGQPAGVNVAELVVSRGLGNVINHRDFEERSNYYDA*************************IQDLTMAPVKKARDFLPFLQRSRRIPAVVEYVLSGHRFKVLIPKETCSIAFSFSGVRCPGRNERYSNEALLLMRQKILQRDVEIEVETVDRTGTFLGSLWESRTNVAVILLEAGLAKLQTSFGSDRIPDSHLLEQAEKSAKSQKLKIWENYVEGEEVSNGAAVEGKQKEVLKVVVTEILGGGKFYVQQVGDQKVASVQQ***************FNPKKGEIVLAQFSADNSWNRAMDNC********
**********WYRARVKAVPSGDSLVITALSNPNPGPPREKTLTLSSIITPRLARRGGLDEPFAWDSREFLRKLCIGKEVTFRVDYAVPNIGREFGTVILGDKNVAMLVVSEGWAK**********ASPFLAELLRLEEQAKLQGLGRWSKVPGAAEASIRNLPPSAIGDSSNFNAMALLDANKGRPMQGIVEQARDGSTLRVYLLPEFQFVQVFVAGIQAPAVARRPAAIVDTDTEETNGDVSAAEAVAPLNSA***************DEPFALDAKYFTEMRVLNREVRIVLEGVDKFKNLIGSVFYPDGETAKDLAMELVENGLAKYIEWSANMMEEDAKRRLKAADLQAKKTRLRMWTNYVPPQSNSKAIHDQNFTGKVVEVVSGDCIIVADDSIPYGNALAERRVNLSSIRCPKIGNP********YAREAREFLRTRLIGRQVNVQMEYSRKVVVEAAPVA*******************************ATETRIIDFGSIFLLSPIKGEGDDASAVAQSNAAGQPAGVNVAELVVSRGLGNVINHRDFEERSNYYDALLAAEA**********SSKEPPVMHIQDLTMAPVKKARDFLPFLQRSRRIPAVVEYVLSGHRFKVLIPKETCSIAFSFSGVRCPGRNERYSNEALLLMRQKILQRDVEIEVETVDRTGTFLGSLWESRTNVAVILLEAGLAKLQTSFGSDRIPDSHLLEQ*********LKIWENYVEGEEVSNGAAVEGKQKEVLKVVVTEILGGGKFYVQQVGDQKVASVQQQLASLNLQEAPVIGAFNPKKGEIVLAQFSADNSWNRAMDNCLLSSSLLQ
*********GWYRARVKAVPSGDSLVITALSNPNPGPPREKTLTLSSIITPRLARRGGLDEPFAWDSREFLRKLCIGKEVTFRVDYAVPNIGREFGTVILGDKNVAMLVVSEGWAKVKEQGSQKGEASPFLAELLRLEEQAKLQG*GR********EASIRNLPPSAIGDSSNFNAMALLDANKGRPMQGIVEQARDGSTLRVYLLPEFQFVQVFVAGIQAPAV********************************************STDEPFALDAKYFTEMRVLNREVRIVLEGVDKFKNLIGSVFYPDGETAKDLAMELVENGLAKYIEWSANMMEEDAKRRLKAADLQAKKTRLRMWTNYVPPQSNSKAIHDQNFTGKVVEVVSGDCIIVADDSIPYGNALAERRVNLSSIRCPKIGNPRKDEKPAAYAREAREFLRTRLIGRQVNVQMEYSRKVVVEAAPVAAGAKGPAGTKGPAGTKGQAAAKGPAGEESVGATETRIIDFGSIFLLSP***************A*GQPAGVNVAELVVSRGLGNVINHRDFEERSNYYDALLAAEARAKAGKKGCYSSKEPPVMHIQDLTMAPVKKARDFLPFLQRSRRIPAVVEYVLSGHRFKVLIPKETCSIAFSFSGVRCPGRNERYSNEALLLMRQKILQRDVEIEVETVDRTGTFLGSLWESRTNVAVILLEAGLAKLQTSFGSDRIPDSHLLEQAEKSAKSQKLKIWENYVEGEE*****A***KQKEVLKVVVTEILGGGKFYVQQVGDQKVASVQQQLASLNLQEAPVIGAFNPKKGEIVLAQFSADNSWNRAMDNCLLSS****
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MATPAAAGGGWYRARVKAVPSGDSLVITALSNPNPGPPREKTLTLSSIITPRLARRGGLDEPFAWDSREFLRKLCIGKEVTFRVDYAVPNIGREFGTVILGDKNVAMLVVSEGWAKVKEQGSQKGEASPFLAELLRLEEQAKLQGLGRWSKVPGAAEASIRNLPPSAIGDSSNFNAMALLDANKGRPMQGIVEQARDGSTLRVYLLPEFQFVQVFVAGIQAPAVARRPAAIVDTDTEETNGDVSAAEAVAPLNSAQRLAASTASAGQQSTDEPFALDAKYFTEMRVLNREVRIVLEGVDKFKNLIGSVFYPDGETAKDLAMELVENGLAKYIEWSANMMEEDAKRRLKAADLQAKKTRLRMWTNYVPPQSNSKAIHDQNFTGKVVEVVSGDCIIVADDSIPYGNALAERRVNLSSIRCPKIGNPRKDEKPAAYAREAREFLRTRLIGRQVNVQMEYSRKVVVEAAPVAAGAKGPAGTKGPAGTKGQAAAKGPAGEESVGATETRIIDFGSIFLLSPIKGEGDDASAVAQSNAAGQPAGVNVAELVVSRGLGNVINHRDFEERSNYYDALLAAEARAKAGKKGCYSSKEPPVMHIQDLTMAPVKKARDFLPFLQRSRRIPAVVEYVLSGHRFKVLIPKETCSIAFSFSGVRCPGRNERYSNEALLLMRQKILQRDVEIEVETVDRTGTFLGSLWESRTNVAVILLEAGLAKLQTSFGSDRIPDSHLLEQAEKSAKSQKLKIWENYVEGEEVSNGAAVEGKQKEVLKVVVTEILGGGKFYVQQVGDQKVASVQQQLASLNLQEAPVIGAFNPKKGEIVLAQFSADNSWNRAMDNCLLSSSLLQ
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query841 2.2.26 [Sep-21-2011]
Q66X93 909 Staphylococcal nuclease d yes no 0.822 0.761 0.349 1e-112
Q78PY7 910 Staphylococcal nuclease d yes no 0.822 0.760 0.349 1e-111
Q863B3 910 Staphylococcal nuclease d yes no 0.822 0.760 0.342 1e-110
Q7KZF4 910 Staphylococcal nuclease d yes no 0.822 0.760 0.342 1e-110
Q5REU4 910 Staphylococcal nuclease d yes no 0.822 0.760 0.343 1e-110
Q7ZT42 897 Staphylococcal nuclease d yes no 0.826 0.774 0.343 1e-110
Q9Y7U7878 Staphylococcal nuclease d yes no 0.455 0.436 0.281 1e-34
O60168230 Probable endonuclease C19 no no 0.203 0.743 0.237 3e-07
>sp|Q66X93|SND1_RAT Staphylococcal nuclease domain-containing protein 1 OS=Rattus norvegicus GN=Snd1 PE=2 SV=1 Back     alignment and function desciption
 Score =  405 bits (1041), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 298/853 (34%), Positives = 440/853 (51%), Gaps = 161/853 (18%)

Query: 13  RARVKAVPSGDSLVITALSNPNPGPPREKTLTLSSIITPRLARRGGL---------DEPF 63
           R  VK V SG ++++     P  GPP E+ + LS+I    LARR            DEP+
Sbjct: 20  RGIVKMVLSGCAIIVRG--QPRGGPPPERQINLSNIRAGNLARRAAATQPDGKDTPDEPW 77

Query: 64  AWDSREFLRKLCIGKEVTFRVDYAVPNIGREFGTVILGD----KNVAMLVVSEGWAKVKE 119
           A+ +REFLRK  IGKEV F ++   P  GRE+G + LG     +N+A  +V+EG A  +E
Sbjct: 78  AFPAREFLRKKLIGKEVCFTIENKTPQ-GREYGMIYLGKDTNGENIAESLVAEGLASRRE 136

Query: 120 QGSQKGEASPFLAELLRLEEQAKLQGLGRWSKVPGAAEASIRNLPPSAIGDSSNFNAMAL 179
            G +    +P    L   EEQAK    G WS+  G    +IR+L    I +  +F     
Sbjct: 137 -GMRAN--NPEQNRLSECEEQAKASKKGMWSE--GNGSHTIRDLK-YTIENPRHF----- 185

Query: 180 LDANKGRPMQGIVEQARDGSTLRVYLLPEFQFVQVFVAGIQAPAVARRPAAIVDTDTEET 239
           +D++  +P+  I+E  RDGS +R  LLP+   V V ++GI+ P   R           ET
Sbjct: 186 VDSHHQKPVNAIIEHVRDGSVVRALLLPDHYLVTVMLSGIKCPTFRR-----------ET 234

Query: 240 NGDVSAAEAVAPLNSAQRLAASTASAGQQSTDEPFALDAKYFTEMRVLNREVRIVLEGVD 299
           +G                            T EPFA +AK+FTE R+L R+V+I+LE   
Sbjct: 235 DG--------------------------SETPEPFAAEAKFFTESRLLQRDVQIILESCH 268

Query: 300 KFKNLIGSVFYPDGETAKDLAMELVENGLAKYIEWSANMMEEDAKRRLKAADLQAKKTRL 359
             +N++G++ +P+G    ++   L++ G A+ ++WS  +    A++ L+AA+  AK+ RL
Sbjct: 269 N-QNILGTILHPNG----NITELLLKEGFARCVDWSIAVYTRGAEK-LRAAERFAKERRL 322

Query: 360 RMWTNYVPPQSNSKAIHDQNFTGKVVEVVSGDCIIVADDSIPYGNALAERRVNLSSIRCP 419
           R+W +YVPP +N     D+ F  KV++V++ D I+V  +S  Y      + ++LSSIR P
Sbjct: 323 RIWRDYVPPTANLDQ-KDKQFVAKVMQVLNADAIVVKLNSGDY------KTIHLSSIRPP 375

Query: 420 K-----IGNPRKDEKP---AAYAREAREFLRTRLIGRQVNVQMEYSRKVVVEAAPVAAGA 471
           +     I +  K  +P     Y  EAREFLR +LIG++V+V ++Y R     A+P     
Sbjct: 376 RLEGDNIQDKNKKLRPLYDIPYMFEAREFLRKKLIGKKVSVTVDYIRP----ASP----- 426

Query: 472 KGPAGTKGPAGTKGQAAAKGPAGEESVGATETRIIDFGSIFLLSPIKGEGDDASAVAQSN 531
                          A    PA  E   AT T                            
Sbjct: 427 ---------------ATETVPAFSERTCATVT---------------------------- 443

Query: 532 AAGQPAGVNVAELVVSRGLGNVINHR-DFEERSNYYDALLAAEARAKAGKKGCYSSKEPP 590
                 G+N+AE +VS+GL  VI +R D ++RS++YD LLAAEARA    KG +S KE P
Sbjct: 444 ----IGGINIAEALVSKGLATVIRYRQDDDQRSSHYDELLAAEARAIKNGKGLHSKKEVP 499

Query: 591 VMHIQDLTMAPVKKARDFLPFLQRSRRIPAVVEYVLSGHRFKVLIPKETCSIAFSFSGVR 650
           +  + D++    +KA+ FLPFLQR+ R  AVVEYV SG R K+ +PKETC I F  +G+ 
Sbjct: 500 IHRVADIS-GDTQKAKQFLPFLQRAGRSEAVVEYVFSGSRLKLYLPKETCLITFLLAGIE 558

Query: 651 CP--GRN--------ERYSNEALLLMRQKILQRDVEIEVETVDRTGTFLGSLWESRTNVA 700
           CP   RN        E +S EA L  ++ +LQR+VE+EVE++D+ G F+G L     N++
Sbjct: 559 CPRGARNLPGLVQEGEPFSEEATLFTKELVLQREVEVEVESMDKAGNFIGWLHMDGANLS 618

Query: 701 VILLEAGLAKLQTSFGSDRIPDSHLLEQAEKSAKSQKLKIWENYVEG--EEVSNGAAVEG 758
           V+L+E  L+K+   F ++R      L  AE++AK +K K+W +Y E   EEV      + 
Sbjct: 619 VLLVEHALSKVH--FTAERSAYYKPLLSAEEAAKQRKEKVWAHYEEQPVEEVMPVLEEKE 676

Query: 759 KQKEVLKVVVTEILGGGKFYVQQV--GDQKVASVQQQLASLNLQEAPVIGAFNPKKGEIV 816
           +      V VTEI     FYVQ V  G Q +  + + + S      PV GA+ P++GE  
Sbjct: 677 RSASYKPVFVTEITDDLHFYVQDVETGTQ-LEKLMENMRSDISSHPPVEGAYAPRRGEFC 735

Query: 817 LAQFSADNSWNRA 829
           +A+F  D  W RA
Sbjct: 736 IAKF-VDGEWYRA 747
Functions as a bridging factor between STAT6 and the basal transcription factor. Plays a role in PIM1 regulation of MYB activity. Plays a role in cell viability. Functions as a transcriptional coactivator for STAT5. Plays a role in cell viability.
Rattus norvegicus (taxid: 10116)
>sp|Q78PY7|SND1_MOUSE Staphylococcal nuclease domain-containing protein 1 OS=Mus musculus GN=Snd1 PE=1 SV=1 Back     alignment and function description
>sp|Q863B3|SND1_BOVIN Staphylococcal nuclease domain-containing protein 1 OS=Bos taurus GN=SND1 PE=1 SV=1 Back     alignment and function description
>sp|Q7KZF4|SND1_HUMAN Staphylococcal nuclease domain-containing protein 1 OS=Homo sapiens GN=SND1 PE=1 SV=1 Back     alignment and function description
>sp|Q5REU4|SND1_PONAB Staphylococcal nuclease domain-containing protein 1 OS=Pongo abelii GN=SND1 PE=2 SV=1 Back     alignment and function description
>sp|Q7ZT42|SND1_DANRE Staphylococcal nuclease domain-containing protein 1 OS=Danio rerio GN=snd1 PE=2 SV=1 Back     alignment and function description
>sp|Q9Y7U7|SND1_SCHPO Staphylococcal nuclease domain-containing protein 1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=snd1 PE=1 SV=1 Back     alignment and function description
>sp|O60168|LCL3_SCHPO Probable endonuclease C19F8.04c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC19F8.04c PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query841
224136368 984 predicted protein [Populus trichocarpa] 0.941 0.804 0.756 0.0
449440482 988 PREDICTED: staphylococcal nuclease domai 0.944 0.803 0.752 0.0
307135996 988 short-chain dehydrogenase/reductase [Cuc 0.944 0.803 0.750 0.0
356516458 990 PREDICTED: staphylococcal nuclease domai 0.947 0.805 0.748 0.0
356508886 990 PREDICTED: staphylococcal nuclease domai 0.947 0.805 0.742 0.0
225447723 1000 PREDICTED: staphylococcal nuclease domai 0.946 0.796 0.749 0.0
255539999 988 ebna2 binding protein P100, putative [Ri 0.946 0.805 0.738 0.0
356527378 995 PREDICTED: staphylococcal nuclease domai 0.950 0.803 0.736 0.0
224122258 978 hypothetical protein POPTRDRAFT_806590 [ 0.935 0.804 0.737 0.0
357464897 992 nuclease domain-containing protein [Medi 0.947 0.803 0.731 0.0
>gi|224136368|ref|XP_002322312.1| predicted protein [Populus trichocarpa] gi|222869308|gb|EEF06439.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score = 1282 bits (3318), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 632/835 (75%), Positives = 711/835 (85%), Gaps = 43/835 (5%)

Query: 1   MATPAAAGGGWYRARVKAVPSGDSLVITALSNPNPGPPREKTLTLSSIITPRLARRGGLD 60
           MAT  A   GWYR +VKAVPSGDSLVI A+++  PGPP EKT+TLSS+I PRLARRGG+D
Sbjct: 1   MATSTAGATGWYRGKVKAVPSGDSLVIMAMTSSKPGPPPEKTITLSSLIAPRLARRGGVD 60

Query: 61  EPFAWDSREFLRKLCIGKEVTFRVDYAVPNIGREFGTVILGDKNVAMLVVSEGWAKVKEQ 120
           EPFAW+SRE+LRKLCIGKEVTF+VDYAVP+IGREFG+V LG+KNVA+LVVSEGWAKV+EQ
Sbjct: 61  EPFAWNSREYLRKLCIGKEVTFKVDYAVPSIGREFGSVFLGEKNVALLVVSEGWAKVREQ 120

Query: 121 GSQKGEASPFLAELLRLEEQAKLQGLGRWSKVPGAAEASIRNLPPSAIGDSSNFNAMALL 180
           G QKGEASPFLAELLRLEEQAK QGLGRWSK PGA+EASIRNLPPSAIGDSSNF+AM LL
Sbjct: 121 GQQKGEASPFLAELLRLEEQAKQQGLGRWSKAPGASEASIRNLPPSAIGDSSNFDAMGLL 180

Query: 181 DANKGRPMQGIVEQARDGSTLRVYLLPEFQFVQVFVAGIQAPAVARRPAAI-----VDTD 235
            ANKG PM+ IVEQ RDGST+RVYLLP+FQFVQVFVAGIQAP++ +R AAI       T 
Sbjct: 181 AANKGTPMECIVEQVRDGSTIRVYLLPDFQFVQVFVAGIQAPSMGKR-AAIETVGETVTT 239

Query: 236 TEETNGDVSAAEAVAPLNSAQRLAASTASAGQQSTDEPFALDAKYFTEMRVLNREVRIVL 295
           +  TNGD S  E  APL SAQRLAAS A    +   +PF ++AKYFTE+R LNR+VRIVL
Sbjct: 240 SNGTNGDTS--ETRAPLTSAQRLAASAAPP--EVAPDPFGMEAKYFTELRTLNRDVRIVL 295

Query: 296 EGVDKFKNLIGSVFYPDGETAKDLAMELVENGLAKYIEWSANMMEEDAKRRLKAADLQAK 355
           EGVDKF NLIGSV+YPDGE+AKDLA+ELVENGLAK++EWSANMMEEDAKR+LK A+LQAK
Sbjct: 296 EGVDKFSNLIGSVYYPDGESAKDLALELVENGLAKFVEWSANMMEEDAKRQLKTAELQAK 355

Query: 356 KTRLRMWTNYVPPQSNSKAIHDQNFTGKVVEVVSGDCIIVADDSIPYGNALAERRVNLSS 415
           K+RLR WTNYVPP +NSKAIHDQNFTGKVVEVVSGDC+IVADDS+PYG+ LAERRVNLSS
Sbjct: 356 KSRLRFWTNYVPPATNSKAIHDQNFTGKVVEVVSGDCVIVADDSVPYGSPLAERRVNLSS 415

Query: 416 IRCPKIGNPRKDEKPAAYAREAREFLRTRLIGRQVNVQMEYSRKVVVEAAPVAAGAKGPA 475
           IRCPK+GNPR+DEKPA YAREA+EFLRTRLIGRQVNV+MEYSRK+               
Sbjct: 416 IRCPKMGNPRRDEKPAPYAREAKEFLRTRLIGRQVNVRMEYSRKM--------------- 460

Query: 476 GTKGPAGTKGQAAAKGPAGEESVGATETRIIDFGSIFLLSPIKGEGDDASAVAQSNAAGQ 535
                  T G  AA  P         + R++DFGSIFLLSP KG   D ++ A S AAGQ
Sbjct: 461 -------TDGPTAAPVPG--------DARVMDFGSIFLLSPTKG---DEASTAPSTAAGQ 502

Query: 536 PAGVNVAELVVSRGLGNVINHRDFEERSNYYDALLAAEARAKAGKKGCYSSKEPPVMHIQ 595
             G+NVAELVVSRG G VI HRDFEERSN+YDALLAAE+RA AGKKG +S+K+PPVMHI 
Sbjct: 503 QPGINVAELVVSRGFGTVIRHRDFEERSNFYDALLAAESRAIAGKKGIHSAKDPPVMHIT 562

Query: 596 DLTMAPVKKARDFLPFLQRSRRIPAVVEYVLSGHRFKVLIPKETCSIAFSFSGVRCPGRN 655
           DLT +  KKA+DFLPFL RSRRI AVVEYVLSGHRFK+LIPKETCSIAFSFSGVRCPGR+
Sbjct: 563 DLTTSSSKKAKDFLPFLHRSRRISAVVEYVLSGHRFKLLIPKETCSIAFSFSGVRCPGRD 622

Query: 656 ERYSNEALLLMRQKILQRDVEIEVETVDRTGTFLGSLWESRTNVAVILLEAGLAKLQTSF 715
           E YS EA+ LMR+KI+QRDVEIEVETVDRTGTFLGSLWESRTN+AV LLEAGLA+ QTSF
Sbjct: 623 EPYSEEAIALMRRKIMQRDVEIEVETVDRTGTFLGSLWESRTNMAVTLLEAGLARFQTSF 682

Query: 716 GSDRIPDSHLLEQAEKSAKSQKLKIWENYVEGEEVSNGAAVEGKQKEVLKVVVTEILGGG 775
           G+DRIPD+HLLEQAE+SAK QKLKIWENYVEGEE+++G  VE KQKEVLKVVVTE+L GG
Sbjct: 683 GTDRIPDAHLLEQAEQSAKRQKLKIWENYVEGEEINSGPVVESKQKEVLKVVVTEVLDGG 742

Query: 776 KFYVQQVGDQKVASVQQQLASLNLQEAPVIGAFNPKKGEIVLAQFSADNSWNRAM 830
           +FYVQ V D+K+AS+QQQLASLNLQEAPVIGAFNPKKG+IVLAQFSADNSWNRAM
Sbjct: 743 RFYVQIVEDKKIASIQQQLASLNLQEAPVIGAFNPKKGDIVLAQFSADNSWNRAM 797

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|449440482|ref|XP_004138013.1| PREDICTED: staphylococcal nuclease domain-containing protein 1-like [Cucumis sativus] gi|449522262|ref|XP_004168146.1| PREDICTED: staphylococcal nuclease domain-containing protein 1-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|307135996|gb|ADN33852.1| short-chain dehydrogenase/reductase [Cucumis melo subsp. melo] Back     alignment and taxonomy information
>gi|356516458|ref|XP_003526911.1| PREDICTED: staphylococcal nuclease domain-containing protein 1-like [Glycine max] Back     alignment and taxonomy information
>gi|356508886|ref|XP_003523184.1| PREDICTED: staphylococcal nuclease domain-containing protein 1-like [Glycine max] Back     alignment and taxonomy information
>gi|225447723|ref|XP_002273150.1| PREDICTED: staphylococcal nuclease domain-containing protein 1 [Vitis vinifera] gi|296088151|emb|CBI35621.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|255539999|ref|XP_002511064.1| ebna2 binding protein P100, putative [Ricinus communis] gi|223550179|gb|EEF51666.1| ebna2 binding protein P100, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|356527378|ref|XP_003532288.1| PREDICTED: staphylococcal nuclease domain-containing protein 1-like [Glycine max] Back     alignment and taxonomy information
>gi|224122258|ref|XP_002318790.1| hypothetical protein POPTRDRAFT_806590 [Populus trichocarpa] gi|222859463|gb|EEE97010.1| hypothetical protein POPTRDRAFT_806590 [Populus trichocarpa] Back     alignment and taxonomy information
>gi|357464897|ref|XP_003602730.1| nuclease domain-containing protein [Medicago truncatula] gi|355491778|gb|AES72981.1| nuclease domain-containing protein [Medicago truncatula] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query841
TAIR|locus:2159218 985 Tudor2 "TUDOR-SN protein 2" [A 0.544 0.464 0.675 2e-283
ZFIN|ZDB-GENE-030131-3124 913 snd1 "staphylococcal nuclease 0.342 0.315 0.385 5.4e-99
RGD|631340 909 Snd1 "staphylococcal nuclease 0.341 0.315 0.384 7.4e-96
UNIPROTKB|Q66X93 909 Snd1 "Staphylococcal nuclease 0.341 0.315 0.384 7.4e-96
MGI|MGI:1929266 910 Snd1 "staphylococcal nuclease 0.341 0.315 0.377 1.2e-95
UNIPROTKB|Q863B3 910 SND1 "Staphylococcal nuclease 0.369 0.341 0.358 1.3e-95
UNIPROTKB|Q7KZF4 910 SND1 "Staphylococcal nuclease 0.341 0.315 0.377 3.3e-95
UNIPROTKB|E2RH91 910 SND1 "Uncharacterized protein" 0.341 0.315 0.377 1.8e-94
FB|FBgn0035121926 Tudor-SN "Tudor-SN" [Drosophil 0.223 0.203 0.411 2.1e-80
DICTYBASE|DDB_G0279659 921 snd1 "Staphylococcus nuclease 0.355 0.324 0.338 3.5e-75
TAIR|locus:2159218 Tudor2 "TUDOR-SN protein 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1610 (571.8 bits), Expect = 2.0e-283, Sum P(2) = 2.0e-283
 Identities = 315/466 (67%), Positives = 374/466 (80%)

Query:     1 MATPAAAGGGWYRARVKAVPSGDSLVITALSNPNPGPPREKTLTLSSIITPRLARRGGLD 60
             MAT AA    W + RVKAV SGD LVITAL++   GPP EKT+TLSS++ P++ARRGG+D
Sbjct:     1 MATGAATENQWLKGRVKAVTSGDCLVITALTHNRAGPPPEKTITLSSLMAPKMARRGGID 60

Query:    61 EPFAWDSREFLRKLCIGKEVTFRVDYAVPNI-GREFGTVILGDKNVAMLVVSEGWAKVKE 119
             EPFAW+SREFLRKLCIGKEV F+VDY V  I GREFG+V LG++N+A LVV  GWAKV+ 
Sbjct:    61 EPFAWESREFLRKLCIGKEVAFKVDYKVEAIAGREFGSVYLGNENLAKLVVQNGWAKVRR 120

Query:   120 QGSQ-KGEASPFLAELLRLEEQAKLQGLGRWSKVPGAAEASIRNLPPSAIGDSSNFNAMA 178
              G Q + + SP++AEL +LEEQA+ +G GRWSKVPGAAEASIRNLPPSA+GDS NF+AM 
Sbjct:   121 PGQQNQDKVSPYIAELEQLEEQAQQEGFGRWSKVPGAAEASIRNLPPSAVGDSGNFDAMG 180

Query:   179 LLDANKGRPMQGIVEQARDGSTLRVYLLPEFQFVQVFVAGXXXXXXX---XXXXXXXDTD 235
             LL A+KG+PM+GIVEQ RDGST+RVYLLPEFQFVQVFVAG                 D D
Sbjct:   181 LLAASKGKPMEGIVEQVRDGSTIRVYLLPEFQFVQVFVAGLQAPSMGRRQSTQEAVVDPD 240

Query:   236 -TEETNGDVSAAEAVAPLNSAQRLXXXXXXXXXXXXDEPFALDAKYFTEMRVLNREVRIV 294
              T  +NGD SA E   PL +AQRL            D PFA++AKYFTE+RVLNR+VRIV
Sbjct:   241 VTATSNGDASA-ETRGPLTTAQRLAASAASSVEVSSD-PFAMEAKYFTELRVLNRDVRIV 298

Query:   295 LEGVDKFKNLIGSVFYPDGETAKDLAMELVENGLAKYIEWSANMMEEDAKRRLKAADLQA 354
             LEGVDKF NLIGSV+Y DG+T KDL +ELVENGLAKY+EWSANM++E+AK++LKA +LQ 
Sbjct:   299 LEGVDKFNNLIGSVYYSDGDTVKDLGLELVENGLAKYVEWSANMLDEEAKKKLKATELQC 358

Query:   355 KKTRLRMWTNYVPPQSNSKAIHDQNFTGKVVEVVSGDCIIVADDSIPYGNALAERRVNLS 414
             KK R++MW NYVPP SNSKAIHDQNFTGKVVEVVSGDC++VADDSIP+G+ +AERRV LS
Sbjct:   359 KKNRVKMWANYVPPASNSKAIHDQNFTGKVVEVVSGDCLVVADDSIPFGSPMAERRVCLS 418

Query:   415 SIRCPKIGNPRKDEKPAAYAREAREFLRTRLIGRQVNVQMEYSRKV 460
             SIR PK+GNPR++EKPA YAREA+EFLR +LIG +V VQMEYSRK+
Sbjct:   419 SIRSPKMGNPRREEKPAPYAREAKEFLRQKLIGMEVIVQMEYSRKI 464
GO:0003676 "nucleic acid binding" evidence=IEA;ISS
GO:0004518 "nuclease activity" evidence=ISS
GO:0016442 "RNA-induced silencing complex" evidence=IEA
GO:0016788 "hydrolase activity, acting on ester bonds" evidence=IEA
GO:0031047 "gene silencing by RNA" evidence=IEA
GO:0046686 "response to cadmium ion" evidence=IEP;RCA
GO:0009686 "gibberellin biosynthetic process" evidence=IMP
GO:0009845 "seed germination" evidence=IMP
GO:0003723 "RNA binding" evidence=TAS
GO:0005635 "nuclear envelope" evidence=IDA
GO:0005783 "endoplasmic reticulum" evidence=IDA
GO:0005829 "cytosol" evidence=IDA
GO:0009306 "protein secretion" evidence=IGI
GO:0009651 "response to salt stress" evidence=IGI;RCA
GO:0009506 "plasmodesma" evidence=IDA
GO:0006007 "glucose catabolic process" evidence=RCA
GO:0006098 "pentose-phosphate shunt" evidence=RCA
ZFIN|ZDB-GENE-030131-3124 snd1 "staphylococcal nuclease domain containing 1" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
RGD|631340 Snd1 "staphylococcal nuclease and tudor domain containing 1" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|Q66X93 Snd1 "Staphylococcal nuclease domain-containing protein 1" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
MGI|MGI:1929266 Snd1 "staphylococcal nuclease and tudor domain containing 1" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|Q863B3 SND1 "Staphylococcal nuclease domain-containing protein 1" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|Q7KZF4 SND1 "Staphylococcal nuclease domain-containing protein 1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|E2RH91 SND1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
FB|FBgn0035121 Tudor-SN "Tudor-SN" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0279659 snd1 "Staphylococcus nuclease (SNase-like) domain-containing protein" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query841
smart00318137 smart00318, SNc, Staphylococcal nuclease homologue 5e-24
smart00318137 smart00318, SNc, Staphylococcal nuclease homologue 2e-23
cd00175129 cd00175, SNc, Staphylococcal nuclease homologues 2e-23
smart00318137 smart00318, SNc, Staphylococcal nuclease homologue 3e-22
cd00175129 cd00175, SNc, Staphylococcal nuclease homologues 1e-20
cd00175129 cd00175, SNc, Staphylococcal nuclease homologues 8e-20
pfam00565106 pfam00565, SNase, Staphylococcal nuclease homologu 1e-14
pfam00565106 pfam00565, SNase, Staphylococcal nuclease homologu 2e-14
pfam00567118 pfam00567, TUDOR, Tudor domain 5e-12
smart00318137 smart00318, SNc, Staphylococcal nuclease homologue 6e-12
pfam00565106 pfam00565, SNase, Staphylococcal nuclease homologu 5e-11
cd00175129 cd00175, SNc, Staphylococcal nuclease homologues 1e-10
COG1525192 COG1525, COG1525, Micrococcal nuclease (thermonucl 4e-08
cd00175129 cd00175, SNc, Staphylococcal nuclease homologues 4e-05
smart00318137 smart00318, SNc, Staphylococcal nuclease homologue 2e-04
COG1525192 COG1525, COG1525, Micrococcal nuclease (thermonucl 6e-04
pfam00565106 pfam00565, SNase, Staphylococcal nuclease homologu 8e-04
>gnl|CDD|214615 smart00318, SNc, Staphylococcal nuclease homologues Back     alignment and domain information 
 Score = 98.1 bits (245), Expect = 5e-24
 Identities = 51/144 (35%), Positives = 65/144 (45%), Gaps = 15/144 (10%)

Query: 12  YRARVKAVPSGDSLVITALSNPNPGPPREKTLTLSSIITPRLARRG----GLDEPFAWDS 67
            R  V+ V  GD++ +       P      T+ LS I  P  AR        DEPF  ++
Sbjct: 3   IRGVVERVIDGDTIRV--RLPKGP----LITIRLSGIDAPETARPNKGDGTPDEPFGEEA 56

Query: 68  REFLRKLCIGKEVTFRVDYAVPNIGREFGTVILGDK-NVAMLVVSEGWAKVKEQGSQKGE 126
           +EFL+KL +GK+V   VD      GR  GTV L    N+A  +V EG AKV        +
Sbjct: 57  KEFLKKLLLGKKVQVEVDSKDRY-GRFLGTVYLNGGNNIAEELVKEGLAKVYR---YADK 112

Query: 127 ASPFLAELLRLEEQAKLQGLGRWS 150
                 ELL  EE AK    G WS
Sbjct: 113 DEYVYDELLEAEEAAKKARKGLWS 136

Length = 137
>gnl|CDD|214615 smart00318, SNc, Staphylococcal nuclease homologues Back     alignment and domain information
>gnl|CDD|238102 cd00175, SNc, Staphylococcal nuclease homologues Back     alignment and domain information
>gnl|CDD|214615 smart00318, SNc, Staphylococcal nuclease homologues Back     alignment and domain information
>gnl|CDD|238102 cd00175, SNc, Staphylococcal nuclease homologues Back     alignment and domain information
>gnl|CDD|238102 cd00175, SNc, Staphylococcal nuclease homologues Back     alignment and domain information
>gnl|CDD|201310 pfam00565, SNase, Staphylococcal nuclease homologue Back     alignment and domain information
>gnl|CDD|201310 pfam00565, SNase, Staphylococcal nuclease homologue Back     alignment and domain information
>gnl|CDD|215998 pfam00567, TUDOR, Tudor domain Back     alignment and domain information
>gnl|CDD|214615 smart00318, SNc, Staphylococcal nuclease homologues Back     alignment and domain information
>gnl|CDD|201310 pfam00565, SNase, Staphylococcal nuclease homologue Back     alignment and domain information
>gnl|CDD|238102 cd00175, SNc, Staphylococcal nuclease homologues Back     alignment and domain information
>gnl|CDD|224442 COG1525, COG1525, Micrococcal nuclease (thermonuclease) homologs [DNA replication, recombination, and repair] Back     alignment and domain information
>gnl|CDD|238102 cd00175, SNc, Staphylococcal nuclease homologues Back     alignment and domain information
>gnl|CDD|214615 smart00318, SNc, Staphylococcal nuclease homologues Back     alignment and domain information
>gnl|CDD|224442 COG1525, COG1525, Micrococcal nuclease (thermonuclease) homologs [DNA replication, recombination, and repair] Back     alignment and domain information
>gnl|CDD|201310 pfam00565, SNase, Staphylococcal nuclease homologue Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 841
KOG2039 875 consensus Transcriptional coactivator p100 [Transc 100.0
smart00318138 SNc Staphylococcal nuclease homologues. 99.93
PRK06518177 hypothetical protein; Provisional 99.92
smart00318138 SNc Staphylococcal nuclease homologues. 99.92
cd00175129 SNc Staphylococcal nuclease homologues. SNase homo 99.92
KOG2039875 consensus Transcriptional coactivator p100 [Transc 99.91
cd00175129 SNc Staphylococcal nuclease homologues. SNase homo 99.9
COG1525192 Micrococcal nuclease (thermonuclease) homologs [DN 99.83
PF00565108 SNase: Staphylococcal nuclease homologue; InterPro 99.82
PRK06518177 hypothetical protein; Provisional 99.82
PF00565108 SNase: Staphylococcal nuclease homologue; InterPro 99.77
COG1525192 Micrococcal nuclease (thermonuclease) homologs [DN 99.71
PF00567121 TUDOR: Tudor domain; InterPro: IPR008191 There are 98.72
cd0450848 TUDOR Tudor domains are found in many eukaryotic o 97.97
smart0033357 TUDOR Tudor domain. Domain of unknown function pre 97.77
smart0074361 Agenet Tudor-like domain present in plant sequence 96.51
PF06003 264 SMN: Survival motor neuron protein (SMN); InterPro 94.86
PF1171755 Tudor-knot: RNA binding activity-knot of a chromod 85.74
KOG3026 262 consensus Splicing factor SPF30 [RNA processing an 80.06
>KOG2039 consensus Transcriptional coactivator p100 [Transcription] Back     alignment and domain information 
Probab=100.00  E-value=7.5e-67  Score=628.88  Aligned_cols=701  Identities=45%  Similarity=0.721  Sum_probs=595.3

Q ss_pred             eEEEEEeEEccCCEEEEeeCCCCCCCCCCeeEEEEEeecCCCCCCCC-CCCChhHHHHHHHHHHhcCCCEEEEEEccccC
Q 003181           11 WYRARVKAVPSGDSLVITALSNPNPGPPREKTLTLSSIITPRLARRG-GLDEPFAWDSREFLRKLCIGKEVTFRVDYAVP   89 (841)
Q Consensus        11 ~~~~~V~~V~dGDTi~v~~~~~~~~g~~~~~~VrL~gIdaPe~~~~~-~~~ep~g~eAre~Lr~ll~Gk~V~~~~~~~~d   89 (841)
                      ...+.|..|.|||.+.++..  ...+++++.+++|+.+.+|++.+++ +-++||+|++++|+|++.+|+.+.|..++-..
T Consensus         4 ~~~~~v~~v~s~d~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~g~d~p~~~~~~~~~~~~~~~k~~~v~~~~~~~   81 (875)
T KOG2039|consen    4 RLVGYVKAVLSGDAFVIRGS--PRAGPPPEFQINLSNVKAPNEARRDKGVDEPFAWESREFLRKSEIGKEVAVTRDQMSA   81 (875)
T ss_pred             EEeeeEEEEeccCccEEEcc--cccCCCCCceEEEeecCCccccccCCCCCCCcChhhHHHHHHHhccceeeeEEeeecc
Confidence            45689999999999999984  4567889999999999999999874 23799999999999999999999999997345


Q ss_pred             CCCcEEEEEEeCCccHHHHHHHcCCeEEEEecCCCCCCchhHHHHHHHHHHHHHhCCCCcCCCCCCcccccccCCCCcCC
Q 003181           90 NIGREFGTVILGDKNVAMLVVSEGWAKVKEQGSQKGEASPFLAELLRLEEQAKLQGLGRWSKVPGAAEASIRNLPPSAIG  169 (841)
Q Consensus        90 ~~gR~~~~V~~~g~~vn~~Lv~~G~A~v~~~~~~~~~~~~~~~~l~~aE~~Ak~~k~GiWs~~~~~~~~~~r~i~~~~~~  169 (841)
                      .++|.+|.+++++.+.++.|+..||+.+.....   .+++|...+...|.+|++.++|+|+..    ....+++.++   
T Consensus        82 ~~~~e~~~~~~~~~~~a~~lv~~g~~~~~~~~~---~~~~~~~~l~~~~~~~k~~~~g~w~~~----~~~~~~~~~~---  151 (875)
T KOG2039|consen   82 NNGREVGFIYLGDENSAESLVKEGLLDVRDEGV---RNSSYFKTLDEVEVQAKQSGRGIWSKL----DHFIRNLKDS---  151 (875)
T ss_pred             ccccccceeecCcchhHHHHHhccCCccccccc---ccchhhhhhhhhhhhhhhhcccccccc----ccceeecccc---
Confidence            679999999999999999999999999887653   227788999999999999999999932    3345778765   


Q ss_pred             CCchhhHHHhhhhcCCCcceeeEEEecCCC-EEEEEEcCCceEEEEEEeeeeCCCCCCCCCccccCcccccCCCcccccc
Q 003181          170 DSSNFNAMALLDANKGRPMQGIVEQARDGS-TLRVYLLPEFQFVQVFVAGIQAPAVARRPAAIVDTDTEETNGDVSAAEA  248 (841)
Q Consensus       170 ~~~~~~~~~~l~~~~~~~~~~~Ve~V~dG~-t~~v~~~~~~~~~~v~l~Gi~~P~~~~~~~~~~~~~~~~~~g~~~~~~~  248 (841)
                         ...+..|+..+.++++.++||+|++|+ +.||.+.+++..++++|+|+.||.+..+.           +++      
T Consensus       152 ---~~~p~~~~~~~~~~~~~~~ve~v~~~~~~~rv~~~p~~~~~~v~lSg~~~P~~~~~s-----------~~~------  211 (875)
T KOG2039|consen  152 ---ALNPAELVDAVGGKPVNAIVEHVRDGEDTVRVLLRPELKYVTVRLSGKRCPSQGPPS-----------DGS------  211 (875)
T ss_pred             ---ccccHHHHHhcCCceeeeehhhccChhhhhhHHhccccceeEEecccccCCCCCCCC-----------CCC------
Confidence               245688899888999999999999999 68888778778899999999999987632           121      


Q ss_pred             ccchhhHHHHhhhcccCCCCCCCchhHHHHHHHHHHhccCceEEEEEeeecCCCCEEEEEEecCCCchhhHHHHHHhcCc
Q 003181          249 VAPLNSAQRLAASTASAGQQSTDEPFALDAKYFTEMRVLNREVRIVLEGVDKFKNLIGSVFYPDGETAKDLAMELVENGL  328 (841)
Q Consensus       249 ~~~~~~~~~~~~~~~~~~~~~~~ep~a~eAk~f~~~~ll~r~V~i~~~~~D~yg~~~~~V~~~~g~~~~di~~~LL~~Gl  328 (841)
                                         ..-.+||+.+|+.|++.++++|+|.|.+++...+-.++|+|++++|+    +++.|+.+|+
T Consensus       212 -------------------~~~~~~~~~~a~~f~~~~~~~r~~~i~~~~~~~~~~~~g~v~~~~~~----i~~~~~~~~~  268 (875)
T KOG2039|consen  212 -------------------PSVPDPFADEAKLFSEDRLLQRAVAIPLESEENYVFFVGDVLYPDGN----IALELLSEGL  268 (875)
T ss_pred             -------------------CCCCCcHHHHHHHhcccchhhhceeeeeccccccccccccccccccc----eeeehhccch
Confidence                               12358999999999999999999999999999887899999999984    9999999999


Q ss_pred             EEEeecccccchHHHHHHHHHHHHHHHHhcccC-CcCCCCCCCCcccccccceeEEEEEEEeCcEEEEEeCCCCCCCccc
Q 003181          329 AKYIEWSANMMEEDAKRRLKAADLQAKKTRLRM-WTNYVPPQSNSKAIHDQNFTGKVVEVVSGDCIIVADDSIPYGNALA  407 (841)
Q Consensus       329 A~v~~~~~~~~~~~~~~~l~~AE~~Ak~~k~Gi-W~~~~~~~~~~~~~~~~~~~~~V~~V~sgd~i~v~~~~~~~~~~~~  407 (841)
                      +++.+|+.+.++.++...++++|..++..+..+ |++|..+.+.++.+..+.|.+.|++++.+||+.+...+   |.   
T Consensus       269 ~k~v~~s~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~q~~~s~~~~~~~~~~~~~v~e~~~~d~~~~~~~s---g~---  342 (875)
T KOG2039|consen  269 AKCVDWSKNEIPCGAAKKLRAAERLAKEHRLRVLWKNYQVPLSTSESIDDKGFSGKVVEVLVSDCVLVALDS---GS---  342 (875)
T ss_pred             HHHHHhhhhccCchhhhhhhHHhhccchhHHHHHHhccccccchheeeccccccceeeeeeccCceEEecCC---CC---
Confidence            999999999888877778999999999999999 99999998888776678899999999999999999865   22   


Q ss_pred             eEEEEeecccCCCCCCCCCCCc--chhhHHHHHHHHHhhcCCcEEEEEEeeeecccccccccccCCCCCCCCCCCCCCcc
Q 003181          408 ERRVNLSSIRCPKIGNPRKDEK--PAAYAREAREFLRTRLIGRQVNVQMEYSRKVVVEAAPVAAGAKGPAGTKGPAGTKG  485 (841)
Q Consensus       408 e~~v~Lssi~~p~~~~~~~~~~--~~~~~~eareflR~~~iGk~v~~~~~y~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  485 (841)
                      +.++.+++|+.|+.+++.+..+  .-||+++|++|+|+++||++|.++++|.++...                .      
T Consensus       343 ~~~~~~~~i~~pr~~~~~~~~~p~~~~~q~~a~~~~~~~~i~~~v~~~~~~~~~~~~----------------~------  400 (875)
T KOG2039|consen  343 ENKLFLSSIRLPRAGEPGRSLKPYISPVQLVAREFLRKKLIGKRVILQMDVIRPRRE----------------N------  400 (875)
T ss_pred             ceEEEeeeccCccccccccccCCccccHHHHhhhhhhhhccCceeeEeeeccccccc----------------c------
Confidence            7899999999999555444334  489999999999999999999999999976420                0      


Q ss_pred             ccccCCCCCCCCcccccceeeeeeeEEecCCCCCCCCCchhhhccccCCCCCCcchhHHHHhcccceeeecC-CcccccH
Q 003181          486 QAAAKGPAGEESVGATETRIIDFGSIFLLSPIKGEGDDASAVAQSNAAGQPAGVNVAELVVSRGLGNVINHR-DFEERSN  564 (841)
Q Consensus       486 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~g~nv~~~lv~~G~a~v~~~r-~~~~~s~  564 (841)
                                     ..  . ..+.+.+                      ..|+|+++.++.+|++++++|| ++..++.
T Consensus       401 ---------------~~--~-~~c~~~~----------------------~~~~~~a~~~~~kg~~~~v~~~~~~~~~s~  440 (875)
T KOG2039|consen  401 ---------------VP--T-KVCALPL----------------------GGGKNVAELLVKKGLATVVRKRQDDEQRSS  440 (875)
T ss_pred             ---------------cc--c-ccccccC----------------------CCcceeeEEEecccchhhhhhHhhhhhhcc
Confidence                           00  0 1111221                      1368999999999999999999 4567899


Q ss_pred             HHHHHHHHHHHHHhcCCCccCCCCCCceEEEeCCCCccccccccccccccCCccceEEEEEecCCEEEEEecCCcceEEE
Q 003181          565 YYDALLAAEARAKAGKKGCYSSKEPPVMHIQDLTMAPVKKARDFLPFLQRSRRIPAVVEYVLSGHRFKVLIPKETCSIAF  644 (841)
Q Consensus       565 ~y~~Lv~ae~~A~~~~~G~~~~~~~~~~~~~D~~~~n~~~~~~~l~~~~k~~~l~~~Ve~V~dGdtl~v~ip~~~~~i~v  644 (841)
                      .|+.|+.+|..|..+++|||+.+.+..+.+.+++.--...+..+++++++...+..+|+.+++|+++++++|++.|.+++
T Consensus       441 ~~d~ll~~E~~~~~~~~~~~s~~~~~~~~~~~~~~~i~~n~~~~~~~~~~~~~~~~~v~~~~~gs~~~~~~pk~~~~~~~  520 (875)
T KOG2039|consen  441 HYDLLLVAEAIAIKGKKGCHSKKLDPTLRITDLTVDIVRNKVQFLPSLDRGNRVEAIVEAVISGSRLRLYIPKETCYCQF  520 (875)
T ss_pred             hhhhhhcchHHHHhhhhhhcccCCCcceeechhhhhhhcCcEEeehhhccccceeeeeeeeeccccceeccCCcceeEEE
Confidence            99999999999999999999987775666777753222334489999999999999999999999999999999999999


Q ss_pred             EEeeecCCC-------CCcccHHHHHHHHHHHhcCceEEEEEEEEcCCCcEEEEEEeC-CcchhHHHHHcCCeecccccC
Q 003181          645 SFSGVRCPG-------RNERYSNEALLLMRQKILQRDVEIEVETVDRTGTFLGSLWES-RTNVAVILLEAGLAKLQTSFG  716 (841)
Q Consensus       645 ~LaGI~~P~-------~~e~~g~EA~~~l~~~ll~r~V~v~v~~~Dk~Gr~~g~v~~~-~~~i~~~Ll~~GlA~v~~~~~  716 (841)
                      .++|++||+       .+++|+.+|..|+..+++++++++.+..+|+.|++++..|.+ +.++...++++||+..+  +.
T Consensus       521 ~~~g~~~~~~~r~~~~~~e~~~~~~~~~~~~~vl~~~~~l~v~~~~~~~~~l~~~~~~~~~~~s~~~~e~~L~~~~--~~  598 (875)
T KOG2039|consen  521 ALAGIDCPSGARNDVQEGEPFSEEAIEFTRSLVLQREVELEVEITDKNGNFLGSLYEDSKTNLSLKLLEQGLAPEH--FA  598 (875)
T ss_pred             eeccccCcccccccccccCCccHHHHHHhhhheeccceEEEEeeeccCccccccccccccccchhhhhhhhcCccc--hh
Confidence            999999997       488999999999999999999999999999999999999988 88999999999999996  55


Q ss_pred             CCCCCchHHHHHHHHHHH-hccccccccccCCcccccCcc--ccCCcccEEEEEEEEEeeCCeEEEEecCc-hhHHHHHH
Q 003181          717 SDRIPDSHLLEQAEKSAK-SQKLKIWENYVEGEEVSNGAA--VEGKQKEVLKVVVTEILGGGKFYVQQVGD-QKVASVQQ  792 (841)
Q Consensus       717 ~~~~~~~~~l~~AE~~AK-~~k~GlW~~~~~~~~~~~~~~--~~~~~g~~~~v~Vs~V~s~~~f~iQ~~~~-~~L~~L~~  792 (841)
                      .++......+..++..|+ ..+.++|..+.++........  .......+..+.+++|..+..||+|..+. .+++++|.
T Consensus       599 ~e~~~~~~~~~s~~~~ak~~~k~~~~~~~v~~~~~e~~~~~~~~~~~~~~~~~~~~~i~p~~~F~~q~~~~~~~i~~~~~  678 (875)
T KOG2039|consen  599 AERSSEYPPLESAELPAKLEQKLKIWLNYVEPVVEEVVLCLEKDERDLNTLKVVVTEITPGKGFYVQSISDGSKITKIMT  678 (875)
T ss_pred             hhhhhhccchhhhhhccccchhcceeecccccchhhheecccccccccccceeeEeeecCCCcceeecccchHHHHHHHH
Confidence            555566677889999999 899999999877633211110  00122345678888887779999999984 89999999


Q ss_pred             HHHHhhccCCCCCCCCCCCCCCeEEEEECCCCcEeeEEEeeEcC
Q 003181          793 QLASLNLQEAPVIGAFNPKKGEIVLAQFSADNSWNRAMDNCLLS  836 (841)
Q Consensus       793 ~l~~~~~~~~~~~~~~~pk~G~~c~A~fs~D~~WYRAkV~~v~~  836 (841)
                      .|+.......+..+.+.|+.|++|+|+|+-||+||||+|+.|.+
T Consensus       679 ~~~~~~~~~~~~~~~~~p~~gd~c~A~y~~D~qwyRa~i~~V~~  722 (875)
T KOG2039|consen  679 NLSQLVELKPPSSGSYTPKRGDLCVAKYSLDGQWYRALIVEVLD  722 (875)
T ss_pred             HHHHHhhhcccccCCCCCCCCCeeeeeeccccceeeeeeeeecc
Confidence            99998887667767899999999999999999999999999876

>smart00318 SNc Staphylococcal nuclease homologues Back     alignment and domain information
>PRK06518 hypothetical protein; Provisional Back     alignment and domain information
>smart00318 SNc Staphylococcal nuclease homologues Back     alignment and domain information
>cd00175 SNc Staphylococcal nuclease homologues Back     alignment and domain information
>KOG2039 consensus Transcriptional coactivator p100 [Transcription] Back     alignment and domain information
>cd00175 SNc Staphylococcal nuclease homologues Back     alignment and domain information
>COG1525 Micrococcal nuclease (thermonuclease) homologs [DNA replication, recombination, and repair] Back     alignment and domain information
>PF00565 SNase: Staphylococcal nuclease homologue; InterPro: IPR006021 Staphylococcus aureus nuclease (SNase) homologues, previously thought to be restricted to bacteria and archaea, are also in eukaryotes Back     alignment and domain information
>PRK06518 hypothetical protein; Provisional Back     alignment and domain information
>PF00565 SNase: Staphylococcal nuclease homologue; InterPro: IPR006021 Staphylococcus aureus nuclease (SNase) homologues, previously thought to be restricted to bacteria and archaea, are also in eukaryotes Back     alignment and domain information
>COG1525 Micrococcal nuclease (thermonuclease) homologs [DNA replication, recombination, and repair] Back     alignment and domain information
>PF00567 TUDOR: Tudor domain; InterPro: IPR008191 There are multiple copies of this domain in the Drosophila melanogaster tudor protein and it has been identified in several RNA-binding proteins [] Back     alignment and domain information
>cd04508 TUDOR Tudor domains are found in many eukaryotic organisms and have been implicated in protein-protein interactions in which methylated protein substrates bind to these domains Back     alignment and domain information
>smart00333 TUDOR Tudor domain Back     alignment and domain information
>smart00743 Agenet Tudor-like domain present in plant sequences Back     alignment and domain information
>PF06003 SMN: Survival motor neuron protein (SMN); InterPro: IPR010304 This family consists of several eukaryotic survival motor neuron (SMN) proteins Back     alignment and domain information
>PF11717 Tudor-knot: RNA binding activity-knot of a chromodomain ; PDB: 2EKO_A 2RO0_A 2RNZ_A 1WGS_A 3E9G_A 3E9F_A 2K3X_A 2K3Y_A 2EFI_A 2F5K_F Back     alignment and domain information
>KOG3026 consensus Splicing factor SPF30 [RNA processing and modification] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query841
3bdl_A 570 Crystal Structure Of A Truncated Human Tudor-Sn Len 4e-47
2wac_A 218 Extended Tudor Domain Of Drosophila Melanogaster Tu 4e-06
3omg_A 261 Structure Of Human Snd1 Extended Tudor Domain In Co 9e-05
4j1m_A143 Crystal Structure Of Staphylococcal Nuclease Varian 3e-04
4iun_A143 Crystal Structure Of Staphylococcal Nuclease Varian 3e-04
3hej_A143 Crystal Structure Of Staphylococcal Nuclease Varian 4e-04
3mhb_A143 Crystal Structure Of Staphylococcal Nuclease Varian 5e-04
3sk8_A143 Crystal Structure Of Staphylococcal Nuclease Varian 9e-04
>pdb|3BDL|A Chain A, Crystal Structure Of A Truncated Human Tudor-Sn Length = 570 Back     alignment and structure 
Iteration: 1

 Score =  186 bits (472), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 116/307 (37%), Positives = 173/307 (56%), Gaps = 20/307 (6%)
Query: 538 GVNVAELVVSRGLGNVINHR-DFEERSNYYDXXXXXXXXXXXXXXXCYSSKEPPVMHIQD 596
           G+N+AE +VS+GL  VI +R D ++RS++YD                +S KE P+  + D
Sbjct: 129 GINIAEALVSKGLATVIRYRQDDDQRSSHYDELLAAEARAIKNGKGLHSKKEVPIHRVAD 188
Query: 597 LTMAPVKKARDFLPFLQRSRRIPAVVEYVLSGHRFKVLIPKETCSIAFSFSGVRCP--GR 654
           ++    +KA+ FLPFLQR+ R  AVVEYV SG R K+ +PKETC I F  +G+ CP   R
Sbjct: 189 IS-GDTQKAKQFLPFLQRAGRSEAVVEYVFSGSRLKLYLPKETCLITFLLAGIECPRGAR 247
Query: 655 N--------ERYSNEALLLMRQKILQRDVEIEVETVDRTGTFLGSLWESRTNVAVILLEA 706
           N        E +S EA L  ++ +LQR+VE+EVE++D+ G F+G L     N++V+L+E 
Sbjct: 248 NLPGLVQEGEPFSEEATLFTKELVLQREVEVEVESMDKAGNFIGWLHIDGANLSVLLVEH 307
Query: 707 GLAKLQTSFGSDRIPDSHLLEQAEKSAKSQKLKIWENYVEG--EEVSNGAAVEGKQKEVL 764
            L+K+   F ++R      L  AE++AK +K K+W +Y E   EEV      + +     
Sbjct: 308 ALSKVH--FTAERSSYYKSLLSAEEAAKQKKEKVWAHYEEQPVEEVMPVLEEKERSASYK 365
Query: 765 KVVVTEILGGGKFYVQQV--GDQKVASVQQQLASLNLQEAPVIGAFNPKKGEIVLAQFSA 822
            V VTEI     FYVQ V  G Q +  + + + +      PV G++ P++GE  +A+F  
Sbjct: 366 PVFVTEITDDLHFYVQDVETGTQ-LEKLMENMRNDIASHPPVEGSYAPRRGEFCIAKF-V 423
Query: 823 DNSWNRA 829
           D  W RA
Sbjct: 424 DGEWYRA 430
>pdb|2WAC|A Chain A, Extended Tudor Domain Of Drosophila Melanogaster Tudor-Sn ( P100) Length = 218 Back     alignment and structure
>pdb|3OMG|A Chain A, Structure Of Human Snd1 Extended Tudor Domain In Complex With The Symmetrically Dimethylated Arginine Piwil1 Peptide R14me2s Length = 261 Back     alignment and structure
>pdb|4J1M|A Chain A, Crystal Structure Of Staphylococcal Nuclease Variant Delta+phs R105e At Cryogenic Temperature Length = 143 Back     alignment and structure
>pdb|4IUN|A Chain A, Crystal Structure Of Staphylococcal Nuclease Variant Delta+phs R126e At Cryogenic Temperature Length = 143 Back     alignment and structure
>pdb|3HEJ|A Chain A, Crystal Structure Of Staphylococcal Nuclease Variant Delta+p Cryogenic Temperature Length = 143 Back     alignment and structure
>pdb|3MHB|A Chain A, Crystal Structure Of Staphylococcal Nuclease Variant Delta+phs L38a At Cryogenic Temperature Length = 143 Back     alignment and structure
>pdb|3SK8|A Chain A, Crystal Structure Of Staphylococcal Nuclease Variant Delta+phs M98g Apo Protein At Cryogenic Temperature Length = 143 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query841
3bdl_A 570 Staphylococcal nuclease domain-containing protein 4e-84
3bdl_A570 Staphylococcal nuclease domain-containing protein 2e-42
3bdl_A570 Staphylococcal nuclease domain-containing protein 2e-20
3bdl_A570 Staphylococcal nuclease domain-containing protein 3e-11
2hqx_A 246 P100 CO-activator tudor domain; human P100 tudor d 4e-14
2hqx_A246 P100 CO-activator tudor domain; human P100 tudor d 1e-08
2hqx_A246 P100 CO-activator tudor domain; human P100 tudor d 2e-04
2hqx_A246 P100 CO-activator tudor domain; human P100 tudor d 6e-04
2wac_A 218 CG7008-PA; unknown function, tudor, beta-barrel, n 4e-14
2wac_A218 CG7008-PA; unknown function, tudor, beta-barrel, n 4e-09
2wac_A218 CG7008-PA; unknown function, tudor, beta-barrel, n 1e-07
2wac_A218 CG7008-PA; unknown function, tudor, beta-barrel, n 4e-05
3ntk_A169 Maternal protein tudor; tudor domain, OB-fold, GER 2e-13
4eqp_A143 Thermonuclease; staphylococcal nuclease, hyperstab 6e-10
4eqp_A143 Thermonuclease; staphylococcal nuclease, hyperstab 1e-08
4eqp_A143 Thermonuclease; staphylococcal nuclease, hyperstab 3e-07
3pnw_C77 Tudor domain-containing protein 3; FAB, structural 9e-05
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-04
3fdr_A94 Tudor and KH domain-containing protein; TDRD2, str 8e-04
>3bdl_A Staphylococcal nuclease domain-containing protein 1; staphylococcal nuclease OB fold, tudor domain, cytoplasm, HOST-virus interaction, nucleus; HET: CIT; 1.90A {Homo sapiens} Length = 570 Back     alignment and structure
 Score =  279 bits (713), Expect = 4e-84
 Identities = 160/491 (32%), Positives = 240/491 (48%), Gaps = 92/491 (18%)

Query: 362 WTNYVPPQSNSKAIHDQNFTGKVVEVVSGDCIIVADDSIPYGNALAERRVNLSSIRCPKI 421
            +  VP  S+     D+ F  KV++V++ D I+V  +S         + ++LSSIR P++
Sbjct: 11  SSGLVPRGSHM----DKQFVAKVMQVLNADAIVVKLNSGD------YKTIHLSSIRPPRL 60

Query: 422 GNPRKDEKPA--------AYAREAREFLRTRLIGRQVNVQMEYSRKVVVEAAPVAAGAKG 473
                 +K           Y  EAREFLR +LIG++VNV ++Y R               
Sbjct: 61  EGENTQDKNKKLRPLYDIPYMFEAREFLRKKLIGKKVNVTVDYIRPA------------- 107

Query: 474 PAGTKGPAGTKGQAAAKGPAGEESVGATETRIIDFGSIFLLSPIKGEGDDASAVAQSNAA 533
                                 E+V A   R     ++ +                    
Sbjct: 108 ------------------SPATETVPAFSER--TCATVTI-------------------- 127

Query: 534 GQPAGVNVAELVVSRGLGNVINHR-DFEERSNYYDALLAAEARAKAGKKGCYSSKEPPVM 592
               G+N+AE +VS+GL  VI +R D ++RS++YD LLAAEARA    KG +S KE P+ 
Sbjct: 128 ---GGINIAEALVSKGLATVIRYRQDDDQRSSHYDELLAAEARAIKNGKGLHSKKEVPIH 184

Query: 593 HIQDLTMAPVKKARDFLPFLQRSRRIPAVVEYVLSGHRFKVLIPKETCSIAFSFSGVRCP 652
            + D      +KA+ FLPFLQR+ R  AVVEYV SG R K+ +PKETC I F  +G+ CP
Sbjct: 185 RVAD-ISGDTQKAKQFLPFLQRAGRSEAVVEYVFSGSRLKLYLPKETCLITFLLAGIECP 243

Query: 653 ----------GRNERYSNEALLLMRQKILQRDVEIEVETVDRTGTFLGSLWESRTNVAVI 702
                        E +S EA L  ++ +LQR+VE+EVE++D+ G F+G L     N++V+
Sbjct: 244 RGARNLPGLVQEGEPFSEEATLFTKELVLQREVEVEVESMDKAGNFIGWLHIDGANLSVL 303

Query: 703 LLEAGLAKLQTSFGSDRIPDSHLLEQAEKSAKSQKLKIWENY--VEGEEVSNGAAVEGKQ 760
           L+E  L+K+   F ++R      L  AE++AK +K K+W +Y     EEV      + + 
Sbjct: 304 LVEHALSKVH--FTAERSSYYKSLLSAEEAAKQKKEKVWAHYEEQPVEEVMPVLEEKERS 361

Query: 761 KEVLKVVVTEILGGGKFYVQQVGDQ-KVASVQQQLASLNLQEAPVIGAFNPKKGEIVLAQ 819
                V VTEI     FYVQ V    ++  + + + +      PV G++ P++GE  +A+
Sbjct: 362 ASYKPVFVTEITDDLHFYVQDVETGTQLEKLMENMRNDIASHPPVEGSYAPRRGEFCIAK 421

Query: 820 FSADNSWNRAM 830
           F  D  W RA 
Sbjct: 422 FV-DGEWYRAR 431
>3bdl_A Staphylococcal nuclease domain-containing protein 1; staphylococcal nuclease OB fold, tudor domain, cytoplasm, HOST-virus interaction, nucleus; HET: CIT; 1.90A {Homo sapiens} Length = 570 Back     alignment and structure
>3bdl_A Staphylococcal nuclease domain-containing protein 1; staphylococcal nuclease OB fold, tudor domain, cytoplasm, HOST-virus interaction, nucleus; HET: CIT; 1.90A {Homo sapiens} Length = 570 Back     alignment and structure
>3bdl_A Staphylococcal nuclease domain-containing protein 1; staphylococcal nuclease OB fold, tudor domain, cytoplasm, HOST-virus interaction, nucleus; HET: CIT; 1.90A {Homo sapiens} Length = 570 Back     alignment and structure
>2hqx_A P100 CO-activator tudor domain; human P100 tudor domain, proteolytic fragment, PSI, structural genomics; 1.42A {Homo sapiens} SCOP: b.34.9.1 PDB: 2hqe_A 3omc_A* 3omg_A* 2o4x_A 2e6n_A 2o4x_B Length = 246 Back     alignment and structure
>2hqx_A P100 CO-activator tudor domain; human P100 tudor domain, proteolytic fragment, PSI, structural genomics; 1.42A {Homo sapiens} SCOP: b.34.9.1 PDB: 2hqe_A 3omc_A* 3omg_A* 2o4x_A 2e6n_A 2o4x_B Length = 246 Back     alignment and structure
>2hqx_A P100 CO-activator tudor domain; human P100 tudor domain, proteolytic fragment, PSI, structural genomics; 1.42A {Homo sapiens} SCOP: b.34.9.1 PDB: 2hqe_A 3omc_A* 3omg_A* 2o4x_A 2e6n_A 2o4x_B Length = 246 Back     alignment and structure
>2hqx_A P100 CO-activator tudor domain; human P100 tudor domain, proteolytic fragment, PSI, structural genomics; 1.42A {Homo sapiens} SCOP: b.34.9.1 PDB: 2hqe_A 3omc_A* 3omg_A* 2o4x_A 2e6n_A 2o4x_B Length = 246 Back     alignment and structure
>2wac_A CG7008-PA; unknown function, tudor, beta-barrel, nuclease domain, tudor P100, SND1, methylated arginine, SDMA, splicing; 2.10A {Drosophila melanogaster} Length = 218 Back     alignment and structure
>2wac_A CG7008-PA; unknown function, tudor, beta-barrel, nuclease domain, tudor P100, SND1, methylated arginine, SDMA, splicing; 2.10A {Drosophila melanogaster} Length = 218 Back     alignment and structure
>2wac_A CG7008-PA; unknown function, tudor, beta-barrel, nuclease domain, tudor P100, SND1, methylated arginine, SDMA, splicing; 2.10A {Drosophila melanogaster} Length = 218 Back     alignment and structure
>2wac_A CG7008-PA; unknown function, tudor, beta-barrel, nuclease domain, tudor P100, SND1, methylated arginine, SDMA, splicing; 2.10A {Drosophila melanogaster} Length = 218 Back     alignment and structure
>3ntk_A Maternal protein tudor; tudor domain, OB-fold, GERM cell formation, transcription; 1.80A {Drosophila melanogaster} PDB: 3nth_A* 3nti_A* Length = 169 Back     alignment and structure
>4eqp_A Thermonuclease; staphylococcal nuclease, hyperstable, PDTP, ionizable group, hydrolase; HET: THP; 1.35A {Staphylococcus aureus} PDB: 3ero_A* 2rbm_A* 3d8g_A* 3bdc_A* 4f8m_A* 3lx0_A* 3nqt_A* 3nk9_A* 3pmf_A* 3sr1_A* 3t13_A* 3mxp_A* 3r3o_A* 4df7_A* 3np8_A* 3nxw_A* 3oso_A* 3mz5_A* 3mhb_A* 3dhq_A* ... Length = 143 Back     alignment and structure
>4eqp_A Thermonuclease; staphylococcal nuclease, hyperstable, PDTP, ionizable group, hydrolase; HET: THP; 1.35A {Staphylococcus aureus} PDB: 3ero_A* 2rbm_A* 3d8g_A* 3bdc_A* 4f8m_A* 3lx0_A* 3nqt_A* 3nk9_A* 3pmf_A* 3sr1_A* 3t13_A* 3mxp_A* 3r3o_A* 4df7_A* 3np8_A* 3nxw_A* 3oso_A* 3mz5_A* 3mhb_A* 3dhq_A* ... Length = 143 Back     alignment and structure
>4eqp_A Thermonuclease; staphylococcal nuclease, hyperstable, PDTP, ionizable group, hydrolase; HET: THP; 1.35A {Staphylococcus aureus} PDB: 3ero_A* 2rbm_A* 3d8g_A* 3bdc_A* 4f8m_A* 3lx0_A* 3nqt_A* 3nk9_A* 3pmf_A* 3sr1_A* 3t13_A* 3mxp_A* 3r3o_A* 4df7_A* 3np8_A* 3nxw_A* 3oso_A* 3mz5_A* 3mhb_A* 3dhq_A* ... Length = 143 Back     alignment and structure
>3pnw_C Tudor domain-containing protein 3; FAB, structural genomics consortium, antibody, SGC, protein immune system complex; 2.05A {Homo sapiens} Length = 77 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>3fdr_A Tudor and KH domain-containing protein; TDRD2, structural genomics, structural genomics consortium, SGC, alternative splicing, RNA-binding; 1.75A {Homo sapiens} Length = 94 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query841
3bdl_A 570 Staphylococcal nuclease domain-containing protein 100.0
3bdl_A570 Staphylococcal nuclease domain-containing protein 100.0
4eqp_A143 Thermonuclease; staphylococcal nuclease, hyperstab 99.95
4eqp_A143 Thermonuclease; staphylococcal nuclease, hyperstab 99.88
2wac_A218 CG7008-PA; unknown function, tudor, beta-barrel, n 99.54
2wac_A218 CG7008-PA; unknown function, tudor, beta-barrel, n 99.48
4b9w_A 201 TDRD1, tudor domain-containing protein 1; replicat 99.47
4b9x_A 226 TDRD1, tudor domain-containing protein 1; replicat 99.44
3ntk_A169 Maternal protein tudor; tudor domain, OB-fold, GER 99.4
2hqx_A246 P100 CO-activator tudor domain; human P100 tudor d 99.29
2hqx_A246 P100 CO-activator tudor domain; human P100 tudor d 99.19
3fdr_A94 Tudor and KH domain-containing protein; TDRD2, str 99.02
2eqk_A85 Tudor domain-containing protein 4; structural geno 98.82
2diq_A110 Tudor and KH domain-containing protein; tudor doma 98.8
4a4f_A64 SurviVal of motor neuron-related-splicing factor; 98.63
3s6w_A54 Tudor domain-containing protein 3; methylated argi 98.53
3pnw_C77 Tudor domain-containing protein 3; FAB, structural 98.5
1mhn_A59 SurviVal motor neuron protein; SMN, SMA, spinal mu 98.44
2d9t_A78 Tudor domain-containing protein 3; structural geno 98.44
1g5v_A88 SurviVal motor neuron protein 1; mRNA processing, 98.43
2equ_A74 PHD finger protein 20-like 1; tudor domain, struct 98.08
4b9x_A226 TDRD1, tudor domain-containing protein 1; replicat 97.92
4b9w_A201 TDRD1, tudor domain-containing protein 1; replicat 97.86
2ldm_A81 Uncharacterized protein; PHF20, tudor domain, epig 96.98
3ntk_A169 Maternal protein tudor; tudor domain, OB-fold, GER 96.78
3qii_A85 PHD finger protein 20; tudor domain, structural ge 95.77
3p8d_A67 Medulloblastoma antigen MU-MB-50.72; tudor domain, 95.59
2eqj_A66 Metal-response element-binding transcription facto 86.61
2l8d_A66 Lamin-B receptor; DNA binding protein; NMR {Gallus 86.59
3h8z_A128 FragIle X mental retardation syndrome-related Pro; 82.87
2dig_A68 Lamin-B receptor; tudor domain, integral nuclear e 81.51
>3bdl_A Staphylococcal nuclease domain-containing protein 1; staphylococcal nuclease OB fold, tudor domain, cytoplasm, HOST-virus interaction, nucleus; HET: CIT; 1.90A {Homo sapiens} Back     alignment and structure
Probab=100.00  E-value=2.4e-63  Score=584.75  Aligned_cols=394  Identities=39%  Similarity=0.625  Sum_probs=329.0

Q ss_pred             ccceeEEEEEEEeCcEEEEEeCCCCCCCccceEEEEeecccCCCCC-CCCCCC-------cchhhHHHHHHHHHhhcCCc
Q 003181          377 DQNFTGKVVEVVSGDCIIVADDSIPYGNALAERRVNLSSIRCPKIG-NPRKDE-------KPAAYAREAREFLRTRLIGR  448 (841)
Q Consensus       377 ~~~~~~~V~~V~sgd~i~v~~~~~~~~~~~~e~~v~Lssi~~p~~~-~~~~~~-------~~~~~~~eareflR~~~iGk  448 (841)
                      .+.+.|+|++|++||||.|...++      ++++|+|++|+||++. +++++.       .++||++|||||||++|+||
T Consensus        22 ~~~~~~~V~~V~DGDTi~v~~~~g------~~~~VRL~gIdaPe~~~~~~~~~~~~~~~~~~~p~g~eA~e~L~~~l~gk   95 (570)
T 3bdl_A           22 DKQFVAKVMQVLNADAIVVKLNSG------DYKTIHLSSIRPPRLEGENTQDKNKKLRPLYDIPYMFEAREFLRKKLIGK   95 (570)
T ss_dssp             CSEEEEEEEEEETTTEEEEECTTS------CEEEEEETTEECCCCTTSCCGGGTTTCCHHHHSTTHHHHHHHHHHHHTTC
T ss_pred             CcEEEEEEEEEccCCEEEEECCCC------CEEEEEEEEEcCCCcCCCCCccccccccCcccchhHHHHHHHHHHHhCCC
Confidence            368999999999999999985332      4899999999999984 222211       47899999999999999999


Q ss_pred             EEEEEEeeeecccccccccccCCCCCCCCCCCCCCccccccCCCCCCCCccccccee-eeeeeEEecCCCCCCCCCchhh
Q 003181          449 QVNVQMEYSRKVVVEAAPVAAGAKGPAGTKGPAGTKGQAAAKGPAGEESVGATETRI-IDFGSIFLLSPIKGEGDDASAV  527 (841)
Q Consensus       449 ~v~~~~~y~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~  527 (841)
                      +|.+.++|.++....              .+                    ..+... |.+++|++              
T Consensus        96 ~V~~~~~~~~~~~~~--------------~~--------------------~~D~yg~R~la~v~~--------------  127 (570)
T 3bdl_A           96 KVNVTVDYIRPASPA--------------TE--------------------TVPAFSERTCATVTI--------------  127 (570)
T ss_dssp             EEEEEEEEEESSCCC--------------SS--------------------CSSSSCCEEEEEEEE--------------
T ss_pred             EEEEEEEeecccccc--------------cc--------------------ccCCCCceEEEEEcc--------------
Confidence            999999998764210              00                    011223 66888887              


Q ss_pred             hccccCCCCCCcchhHHHHhcccceeeecC-CcccccHHHHHHHHHHHHHHhcCCCccCCCCCCceEEEeCCCCcccccc
Q 003181          528 AQSNAAGQPAGVNVAELVVSRGLGNVINHR-DFEERSNYYDALLAAEARAKAGKKGCYSSKEPPVMHIQDLTMAPVKKAR  606 (841)
Q Consensus       528 ~~~~~~~~~~g~nv~~~lv~~G~a~v~~~r-~~~~~s~~y~~Lv~ae~~A~~~~~G~~~~~~~~~~~~~D~~~~n~~~~~  606 (841)
                               +|.|||++||++|||.|.+|| .+++++..|+.|++||+.|+++++|+|+.+++++.+++|++ .+.++++
T Consensus       128 ---------~g~~v~~~lv~~G~A~v~~~~~~~~~~~~~~~~l~~aE~~A~~~~~GlW~~~~~~~~~~~d~~-~~~~~~~  197 (570)
T 3bdl_A          128 ---------GGINIAEALVSKGLATVIRYRQDDDQRSSHYDELLAAEARAIKNGKGLHSKKEVPIHRVADIS-GDTQKAK  197 (570)
T ss_dssp             ---------TTEEHHHHHHHTTSSEECCCSSTTSCCCTTHHHHHHHHHHHHHTTCGGGCCSCCCCCCCEECT-TCHHHHH
T ss_pred             ---------CCccHHHHHHhCcCEEEEeecCCccccChHHHHHHHHHHHHHHhCCCCCCCCCCCcceeeecC-CchHHHH
Confidence                     468999999999999999987 55567888999999999999999999998776767799997 4788999


Q ss_pred             ccccccccCCccceEEEEEecCCEEEEEecCCcceEEEEEeeecCCC----------CCcccHHHHHHHHHHHhcCceEE
Q 003181          607 DFLPFLQRSRRIPAVVEYVLSGHRFKVLIPKETCSIAFSFSGVRCPG----------RNERYSNEALLLMRQKILQRDVE  676 (841)
Q Consensus       607 ~~l~~~~k~~~l~~~Ve~V~dGdtl~v~ip~~~~~i~v~LaGI~~P~----------~~e~~g~EA~~~l~~~ll~r~V~  676 (841)
                      +|++++++.+++.|+|++|+|||||+|++|++++.++|||+||+||+          ..+|||.||++|++++|++|+|+
T Consensus       198 ~~l~~~~~~~~~~~~V~~V~DGDT~~v~~~~~~~~~~vRL~GIdaPe~~~~~~~~~~~~~~~g~eA~~~l~~~l~~r~V~  277 (570)
T 3bdl_A          198 QFLPFLQRAGRSEAVVEYVFSGSRLKLYLPKETCLITFLLAGIECPRGARNLPGLVQEGEPFSEEATLFTKELVLQREVE  277 (570)
T ss_dssp             HHHHHHHHTCEEEEEEEEESSSSEEEEEETTTTEEEEEEESSEECCCCCEEETTEEECCCTTHHHHHHHHHHHHTTCEEE
T ss_pred             HHHHHHhhCCeeeEEEEEEeCCCEEEEEEcCCCcEEEEEEEEEECCCCCCCCCCCccccChHHHHHHHHHHHHhcCCeEE
Confidence            99999988999999999999999999999888999999999999997          36799999999999999999999


Q ss_pred             EEEEEEcCCCcEEEEEEeCCcchhHHHHHcCCeecccccCCCCCCchHHHHHHHHHHHhccccccccccCCcccc--cCc
Q 003181          677 IEVETVDRTGTFLGSLWESRTNVAVILLEAGLAKLQTSFGSDRIPDSHLLEQAEKSAKSQKLKIWENYVEGEEVS--NGA  754 (841)
Q Consensus       677 v~v~~~Dk~Gr~~g~v~~~~~~i~~~Ll~~GlA~v~~~~~~~~~~~~~~l~~AE~~AK~~k~GlW~~~~~~~~~~--~~~  754 (841)
                      |++.+.|+|||++|+||+++.||+..||++|||+++  +...+..+...|.+||++||++++|||+.+.++....  ...
T Consensus       278 ~~~~~~D~ygR~la~v~~~~~~v~~~Lv~~GlA~~~--~~~~~~~~~~~~~~aE~~Ak~~~~GlW~~~~~~~~~~~~~~~  355 (570)
T 3bdl_A          278 VEVESMDKAGNFIGWLHIDGANLSVLLVEHALSKVH--FTAERSSYYKSLLSAEEAAKQKKEKVWAHYEEQPVEEVMPVL  355 (570)
T ss_dssp             EEEEEECTTSCEEEEEEETTEEHHHHHHHTTSSEEC--GGGTTSTTHHHHHHHHHHHHHHTCGGGC----------CCCC
T ss_pred             EEEEeEcCCCCEEEEEEECCEEHHHHHHHcCCcEEE--ecCCCcchHHHHHHHHHHHHHhCCCCCcccccccchhccccc
Confidence            999999999999999999999999999999999996  3344556778899999999999999999876652211  001


Q ss_pred             cccCCcccEEEEEEEEEeeCCeEEEEecCc-hhHHHHHHHHHHhhccCCCCCCCCCCCCCCeEEEEECCCCcEeeEEEee
Q 003181          755 AVEGKQKEVLKVVVTEILGGGKFYVQQVGD-QKVASVQQQLASLNLQEAPVIGAFNPKKGEIVLAQFSADNSWNRAMDNC  833 (841)
Q Consensus       755 ~~~~~~g~~~~v~Vs~V~s~~~f~iQ~~~~-~~L~~L~~~l~~~~~~~~~~~~~~~pk~G~~c~A~fs~D~~WYRAkV~~  833 (841)
                      ......+++++|+||+|.+|++||||..+. .+|++||++|..++.+..+.+..+.|++|++|+|+|+ |+.||||+|++
T Consensus       356 ~~~~~~~~~~~V~Vt~V~sp~~Fyvq~~~~~~~l~~l~~~l~~~~~~~~~l~~~~~~~~G~~c~a~~~-d~~wyRa~I~~  434 (570)
T 3bdl_A          356 EEKERSASYKPVFVTEITDDLHFYVQDVETGTQLEKLMENMRNDIASHPPVEGSYAPRRGEFCIAKFV-DGEWYRARVEK  434 (570)
T ss_dssp             CCSSCCCCCEEEEEEEECTTSEEEEEEGGGHHHHHHHHHHHHHHHHHSCCCTTCCCCCTTCEEEEECT-TSCEEEEEEEE
T ss_pred             ccCCCCCcEEEEEEEEEECCCeEEEEECCcHHHHHHHHHHHHHHHhcCCCCCCCcCCCcCCEEEEEEC-CCCEEEEEEEE
Confidence            111234678999999999999999999974 6799999999998876555544578999999999999 99999999999


Q ss_pred             EcCC
Q 003181          834 LLSS  837 (841)
Q Consensus       834 v~~~  837 (841)
                      +.++
T Consensus       435 v~~~  438 (570)
T 3bdl_A          435 VESP  438 (570)
T ss_dssp             EEET
T ss_pred             EcCC
Confidence            9763
>3bdl_A Staphylococcal nuclease domain-containing protein 1; staphylococcal nuclease OB fold, tudor domain, cytoplasm, HOST-virus interaction, nucleus; HET: CIT; 1.90A {Homo sapiens} Back     alignment and structure
>4eqp_A Thermonuclease; staphylococcal nuclease, hyperstable, PDTP, ionizable group, hydrolase; HET: THP; 1.35A {Staphylococcus aureus} PDB: 3ero_A* 2rbm_A* 3d8g_A* 3bdc_A* 4f8m_A* 3lx0_A* 3nqt_A* 3nk9_A* 3pmf_A* 3sr1_A* 3t13_A* 3mxp_A* 3r3o_A* 4df7_A* 3np8_A* 3nxw_A* 3oso_A* 3mz5_A* 3mhb_A* 3dhq_A* ... Back     alignment and structure
>4eqp_A Thermonuclease; staphylococcal nuclease, hyperstable, PDTP, ionizable group, hydrolase; HET: THP; 1.35A {Staphylococcus aureus} PDB: 3ero_A* 2rbm_A* 3d8g_A* 3bdc_A* 4f8m_A* 3lx0_A* 3nqt_A* 3nk9_A* 3pmf_A* 3sr1_A* 3t13_A* 3mxp_A* 3r3o_A* 4df7_A* 3np8_A* 3nxw_A* 3oso_A* 3mz5_A* 3mhb_A* 3dhq_A* ... Back     alignment and structure
>2wac_A CG7008-PA; unknown function, tudor, beta-barrel, nuclease domain, tudor P100, SND1, methylated arginine, SDMA, splicing; 2.10A {Drosophila melanogaster} Back     alignment and structure
>2wac_A CG7008-PA; unknown function, tudor, beta-barrel, nuclease domain, tudor P100, SND1, methylated arginine, SDMA, splicing; 2.10A {Drosophila melanogaster} Back     alignment and structure
>4b9w_A TDRD1, tudor domain-containing protein 1; replication; HET: 2MR; 2.10A {Mus musculus} Back     alignment and structure
>4b9x_A TDRD1, tudor domain-containing protein 1; replication; 2.80A {Mus musculus} Back     alignment and structure
>3ntk_A Maternal protein tudor; tudor domain, OB-fold, GERM cell formation, transcription; 1.80A {Drosophila melanogaster} PDB: 3nth_A* 3nti_A* Back     alignment and structure
>2hqx_A P100 CO-activator tudor domain; human P100 tudor domain, proteolytic fragment, PSI, structural genomics; 1.42A {Homo sapiens} SCOP: b.34.9.1 PDB: 2hqe_A 3omc_A* 3omg_A* 2o4x_A 2e6n_A 2o4x_B Back     alignment and structure
>2hqx_A P100 CO-activator tudor domain; human P100 tudor domain, proteolytic fragment, PSI, structural genomics; 1.42A {Homo sapiens} SCOP: b.34.9.1 PDB: 2hqe_A 3omc_A* 3omg_A* 2o4x_A 2e6n_A 2o4x_B Back     alignment and structure
>3fdr_A Tudor and KH domain-containing protein; TDRD2, structural genomics, structural genomics consortium, SGC, alternative splicing, RNA-binding; 1.75A {Homo sapiens} SCOP: b.34.9.1 Back     alignment and structure
>2eqk_A Tudor domain-containing protein 4; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>2diq_A Tudor and KH domain-containing protein; tudor domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.34.9.1 Back     alignment and structure
>4a4f_A SurviVal of motor neuron-related-splicing factor; RNA binding protein; HET: 2MR; NMR {Homo sapiens} PDB: 4a4h_A* Back     alignment and structure
>3s6w_A Tudor domain-containing protein 3; methylated arginine recognize, ISO-propanol, transcri; 1.78A {Homo sapiens} PDB: 3pmt_A* Back     alignment and structure
>3pnw_C Tudor domain-containing protein 3; FAB, structural genomics consortium, antibody, SGC, protein immune system complex; 2.05A {Homo sapiens} Back     alignment and structure
>1mhn_A SurviVal motor neuron protein; SMN, SMA, spinal muscular atrophy, RNA binding protein; 1.80A {Homo sapiens} SCOP: b.34.9.1 PDB: 4a4e_A* 4a4g_A* Back     alignment and structure
>2d9t_A Tudor domain-containing protein 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: b.34.9.1 Back     alignment and structure
>1g5v_A SurviVal motor neuron protein 1; mRNA processing, translation; NMR {Homo sapiens} SCOP: b.34.9.1 Back     alignment and structure
>2equ_A PHD finger protein 20-like 1; tudor domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>4b9x_A TDRD1, tudor domain-containing protein 1; replication; 2.80A {Mus musculus} Back     alignment and structure
>4b9w_A TDRD1, tudor domain-containing protein 1; replication; HET: 2MR; 2.10A {Mus musculus} Back     alignment and structure
>2ldm_A Uncharacterized protein; PHF20, tudor domain, epigenetics, methylated P53, transcript factor, transcription-protein binding complex; HET: M2L; NMR {Homo sapiens} Back     alignment and structure
>3ntk_A Maternal protein tudor; tudor domain, OB-fold, GERM cell formation, transcription; 1.80A {Drosophila melanogaster} PDB: 3nth_A* 3nti_A* Back     alignment and structure
>3qii_A PHD finger protein 20; tudor domain, structural genomics, structural GE consortium, SGC, transcription regulator; 2.30A {Homo sapiens} Back     alignment and structure
>3p8d_A Medulloblastoma antigen MU-MB-50.72; tudor domain, lysine-methylated P53 binding, histone binding binding; 2.00A {Homo sapiens} Back     alignment and structure
>2eqj_A Metal-response element-binding transcription factor 2; structure genomics,tudor domain, zinc-regulated factor 1, ZIRF1; NMR {Mus musculus} Back     alignment and structure
>2l8d_A Lamin-B receptor; DNA binding protein; NMR {Gallus gallus} Back     alignment and structure
>3h8z_A FragIle X mental retardation syndrome-related Pro; tudor domains, FXR2, structura genomics, structural genomics consortium, SGC; 1.92A {Homo sapiens} PDB: 3o8v_A 3kuf_A 2bkd_N* Back     alignment and structure
>2dig_A Lamin-B receptor; tudor domain, integral nuclear envelope inner membrane protein, nuclear protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.34.9.1 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 841
d1snoa_136 b.40.1.1 (A:) Staphylococcal nuclease {Staphylococ 8e-12
d1snoa_136 b.40.1.1 (A:) Staphylococcal nuclease {Staphylococ 5e-10
d1snoa_136 b.40.1.1 (A:) Staphylococcal nuclease {Staphylococ 3e-05
d1snoa_136 b.40.1.1 (A:) Staphylococcal nuclease {Staphylococ 0.003
d2hqxa190 b.34.9.1 (A:8-97) P100 co-activator, SND1 {Human ( 5e-04
d2diqa197 b.34.9.1 (A:8-104) Tudor and KH domain-containing 0.003
d2d9ta160 b.34.9.1 (A:8-67) Tudor domain-containing protein 0.003
>d1snoa_ b.40.1.1 (A:) Staphylococcal nuclease {Staphylococcus aureus [TaxId: 1280]} Length = 136 Back     information, alignment and structure

class: All beta proteins
fold: OB-fold
superfamily: Staphylococcal nuclease
family: Staphylococcal nuclease
domain: Staphylococcal nuclease
species: Staphylococcus aureus [TaxId: 1280]

 Score = 61.1 bits (147), Expect = 8e-12
 Identities = 25/142 (17%), Positives = 44/142 (30%), Gaps = 13/142 (9%)

Query: 12  YRARVKAVPSGDSLVITALSNPNPGPPREKTLTLSSIITPRLARRGGLDEPFAWDSREFL 71
             A +     GD++ +           +  T  L  + TP         E +  ++  F 
Sbjct: 5   EPATLIKAIDGDTVKLM-------YKGQPMTFRLLLVDTPETKHPKKGVEKYGPEASAFT 57

Query: 72  RKLCIGKEVTFRVDYAVPNIGREFG---TVILGDKNVAMLVVSEGWAKVKEQGSQKGEAS 128
           +K+    +             +       +    K V   +V +G AKV          +
Sbjct: 58  KKMVENAKKIEVEFDKGQRTDKYGRGLAYIYADGKMVNEALVRQGLAKVAYVYKPN---N 114

Query: 129 PFLAELLRLEEQAKLQGLGRWS 150
                L + E QAK + L  WS
Sbjct: 115 THEQLLRKSEAQAKKEKLNIWS 136
>d1snoa_ b.40.1.1 (A:) Staphylococcal nuclease {Staphylococcus aureus [TaxId: 1280]} Length = 136 Back     information, alignment and structure
>d1snoa_ b.40.1.1 (A:) Staphylococcal nuclease {Staphylococcus aureus [TaxId: 1280]} Length = 136 Back     information, alignment and structure
>d1snoa_ b.40.1.1 (A:) Staphylococcal nuclease {Staphylococcus aureus [TaxId: 1280]} Length = 136 Back     information, alignment and structure
>d2hqxa1 b.34.9.1 (A:8-97) P100 co-activator, SND1 {Human (Homo sapiens) [TaxId: 9606]} Length = 90 Back     information, alignment and structure
>d2diqa1 b.34.9.1 (A:8-104) Tudor and KH domain-containing protein TDRKH {Human (Homo sapiens) [TaxId: 9606]} Length = 97 Back     information, alignment and structure
>d2d9ta1 b.34.9.1 (A:8-67) Tudor domain-containing protein 3, TDRD3 {Mouse (Mus musculus) [TaxId: 10090]} Length = 60 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query841
d1snoa_136 Staphylococcal nuclease {Staphylococcus aureus [Ta 99.94
d1snoa_136 Staphylococcal nuclease {Staphylococcus aureus [Ta 99.89
d2hqxa190 P100 co-activator, SND1 {Human (Homo sapiens) [Tax 99.01
d2diqa197 Tudor and KH domain-containing protein TDRKH {Huma 98.76
d1mhna_59 Survival motor neuron protein 1, smn {Human (Homo 98.58
d2d9ta160 Tudor domain-containing protein 3, TDRD3 {Mouse (M 98.41
>d1snoa_ b.40.1.1 (A:) Staphylococcal nuclease {Staphylococcus aureus [TaxId: 1280]} Back     information, alignment and structure
class: All beta proteins
fold: OB-fold
superfamily: Staphylococcal nuclease
family: Staphylococcal nuclease
domain: Staphylococcal nuclease
species: Staphylococcus aureus [TaxId: 1280]

Probab=99.94  E-value=1.5e-27  Score=227.11  Aligned_cols=130  Identities=22%  Similarity=0.223  Sum_probs=115.5

Q ss_pred             eEEEEEeEEccCCEEEEeeCCCCCCCCCCeeEEEEEeecCCCCCCCCCCCChhHHHHHHHHHHhcC-CCEEEEEEcc--c
Q 003181           11 WYRARVKAVPSGDSLVITALSNPNPGPPREKTLTLSSIITPRLARRGGLDEPFAWDSREFLRKLCI-GKEVTFRVDY--A   87 (841)
Q Consensus        11 ~~~~~V~~V~dGDTi~v~~~~~~~~g~~~~~~VrL~gIdaPe~~~~~~~~ep~g~eAre~Lr~ll~-Gk~V~~~~~~--~   87 (841)
                      ...++|++|+|||||+|...+       ...+|||+||||||+.++....+|||.+|++||+++|. |+.|.+.++.  .
T Consensus         4 ~~~a~V~~V~DGDT~~v~~~~-------~~~~vRL~GIdaPE~~~~~~~~~~~g~eA~~~l~~ll~~~~~v~~~~~~~~~   76 (136)
T d1snoa_           4 KEPATLIKAIDGDTVKLMYKG-------QPMTFRLLLVDTPETKHPKKGVEKYGPEASAFTKKMVENAKKIEVEFDKGQR   76 (136)
T ss_dssp             EEEEEEEEECSSSEEEEEETT-------EEEEEEETTEECCCSSBTTTBSCTTHHHHHHHHHHHHHTCSCEEEEECSSCS
T ss_pred             ccceEEEEEEcCCEEEEEeCC-------cEEEEEEEEEcccccccCCcchhhhHHHHHHHHHHHhhcCceeEEEEecccc
Confidence            347899999999999999763       56899999999999988777789999999999999995 7999998864  3


Q ss_pred             cCCCCcEEEEEEeCCccHHHHHHHcCCeEEEEecCCCCCCchhHHHHHHHHHHHHHhCCCCcC
Q 003181           88 VPNIGREFGTVILGDKNVAMLVVSEGWAKVKEQGSQKGEASPFLAELLRLEEQAKLQGLGRWS  150 (841)
Q Consensus        88 ~d~~gR~~~~V~~~g~~vn~~Lv~~G~A~v~~~~~~~~~~~~~~~~l~~aE~~Ak~~k~GiWs  150 (841)
                      .|+|||.+|+||++|.|||++||++|||+++..+.   .+..+.+.|..||++|+++++||||
T Consensus        77 ~D~~gR~la~v~~~g~~l~~~Lv~~G~A~~~~~~~---~~~~~~~~l~~ae~~Ak~~~~GlWs  136 (136)
T d1snoa_          77 TDKYGRGLAYIYADGKMVNEALVRQGLAKVAYVYK---PNNTHEQLLRKSEAQAKKEKLNIWS  136 (136)
T ss_dssp             BCTTSCEEEEEEETTEEHHHHHHHTTSCEECCCBT---TBCTTHHHHHHHHHHHHHTTCGGGC
T ss_pred             CCccccceeEEEEecchhHHHHHHCCCEEEeeecC---CChhHHHHHHHHHHHHHHcCCCCCC
Confidence            68899999999999999999999999999987764   2345678899999999999999997
>d1snoa_ b.40.1.1 (A:) Staphylococcal nuclease {Staphylococcus aureus [TaxId: 1280]} Back     information, alignment and structure
>d2hqxa1 b.34.9.1 (A:8-97) P100 co-activator, SND1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2diqa1 b.34.9.1 (A:8-104) Tudor and KH domain-containing protein TDRKH {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1mhna_ b.34.9.1 (A:) Survival motor neuron protein 1, smn {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2d9ta1 b.34.9.1 (A:8-67) Tudor domain-containing protein 3, TDRD3 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure