Citrus Sinensis ID: 003193
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 840 | 2.2.26 [Sep-21-2011] | |||||||
| O81825 | 919 | Probable disease resistan | yes | no | 0.689 | 0.630 | 0.285 | 3e-46 | |
| Q9T048 | 985 | Disease resistance protei | no | no | 0.679 | 0.579 | 0.262 | 9e-41 | |
| Q42484 | 909 | Disease resistance protei | no | no | 0.605 | 0.559 | 0.263 | 6e-31 | |
| Q9LVT4 | 843 | Probable disease resistan | no | no | 0.380 | 0.379 | 0.296 | 1e-21 | |
| Q9C8T9 | 898 | Putative disease resistan | no | no | 0.433 | 0.405 | 0.264 | 9e-19 | |
| Q9FLB4 | 874 | Putative disease resistan | no | no | 0.334 | 0.321 | 0.285 | 6e-18 | |
| Q7XBQ9 | 970 | Disease resistance protei | N/A | no | 0.611 | 0.529 | 0.246 | 8e-17 | |
| Q9SI85 | 893 | Probable disease resistan | no | no | 0.617 | 0.581 | 0.233 | 2e-15 | |
| Q8RXS5 | 888 | Probable disease resistan | no | no | 0.370 | 0.350 | 0.280 | 6e-15 | |
| Q7XA42 | 979 | Putative disease resistan | N/A | no | 0.365 | 0.313 | 0.281 | 6e-15 |
| >sp|O81825|DRL28_ARATH Probable disease resistance protein At4g27220 OS=Arabidopsis thaliana GN=At4g27220 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 187 bits (475), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 176/616 (28%), Positives = 286/616 (46%), Gaps = 37/616 (6%)
Query: 15 LSNEEASHLFEKIVGHSAKKSDFETIGVEIVAKCGGLPIAIKTIANALKNKSP-RIWKDA 73
L +EA LF VG A + + I ++ +C GLP+AI TI L+ K +WK
Sbjct: 272 LQEKEAWELFCHNVGEVANSDNVKPIAKDVSHECCGLPLAIITIGRTLRGKPQVEVWKHT 331
Query: 74 VNQLSNSNPRKIQGMDADLSSIELSYEFLKCKEVKSLFQLCGLLKDGSRIAVDDLLRYVM 133
+N L S P I + +++LSY+FL+ +KS F C L + I V +L+ Y +
Sbjct: 332 LNLLKRSAP-SIDTEEKIFGTLKLSYDFLQ-DNMKSCFLFCALFPEDYSIKVSELIMYWV 389
Query: 134 GLRLLTNADTLEAARNRVHTLIDNLKSASLLFDGDSEDHAKMHRIIHAIAVSIAAEK--- 190
LL E N TL++ LK + LL DGDS D KMH ++ A+ + +
Sbjct: 390 AEGLLDGQHHYEDMMNEGVTLVERLKDSCLLEDGDSCDTVKMHDVVRDFAIWFMSSQGEG 449
Query: 191 ---LLFNIQNVADLKEELDKIDEAPTAISIPFRGIYELPERL--GFLKLKLFLFFTENLS 245
L+ + + + + DK + +S+ + LP + G L L L ++
Sbjct: 450 FHSLVMAGRGLIEFPQ--DKFVSSVQRVSLMANKLERLPNNVIEGVETLVLLLQGNSHVK 507
Query: 246 LQIPDPFFEGMTELRVLDLTGFRFHSLPSSLGCLINLRTLSLENC-LVVDVAIIGDLKKL 304
++P+ F + LR+LDL+G R +LP S L +LR+L L NC + ++ + L KL
Sbjct: 508 -EVPNGFLQAFPNLRILDLSGVRIRTLPDSFSNLHSLRSLVLRNCKKLRNLPSLESLVKL 566
Query: 305 EILSLKHSSIEQLPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGNSFTQW 364
+ L L S+I +LPR + L+ L+ + +SN +L+ I I L+ LE L M S W
Sbjct: 567 QFLDLHESAIRELPRGLEALSSLRYICVSNTYQLQSIPAGTILQLSSLEVLDMAGSAYSW 626
Query: 365 KVEG---QSNASLGELKQLSRLTTLEVHIPDAQVMPQ--DLVFVELERFRICIGDVWSWS 419
++G + A+L E+ L L L + + D D + L +F+ + S S
Sbjct: 627 GIKGEEREGQATLDEVTCLPHLQFLAIKLLDVLSFSYEFDSLTKRLTKFQFLFSPIRSVS 686
Query: 420 DGYETSKTLKLQLNNSTYLGYGMKMLLKRTEDLHLDELAG----FKNVVHELDDEEGFAR 475
L + N + G LL+ L L+ G F+N+V + + F
Sbjct: 687 PPGTGEGCLAISDVNVSNASIG--WLLQHVTSLDLNYCEGLNGMFENLVTK--SKSSFVA 742
Query: 476 LRHLHVHNGPEILHILNSDGRVGTFPLLESLFLHNLINLEKVCDGKVRLNEDDKSFSNLR 535
++ L +H P + + ++ FP LE L L N +NLE + + L L+
Sbjct: 743 MKALSIHYFPSLSLASGCESQLDLFPNLEELSLDN-VNLESIGELNGFLG---MRLQKLK 798
Query: 536 IIKVEGCHRVKHLFPFSLVKNLL-QLQKVKVTDCTNLKLIVGKESENSAHKNGSISGVYF 594
+++V GC ++K LF ++ L LQ++KV C L+ + S S+
Sbjct: 799 LLQVSGCRQLKRLFSDQILAGTLPNLQEIKVVSCLRLEELFNFSSVPVDFCAESL----L 854
Query: 595 RKLHFLKLQHLPQLTS 610
KL +KL++LPQL S
Sbjct: 855 PKLTVIKLKYLPQLRS 870
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Probable disease resistance protein. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9T048|DRL27_ARATH Disease resistance protein At4g27190 OS=Arabidopsis thaliana GN=At4g27190 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 169 bits (428), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 165/629 (26%), Positives = 294/629 (46%), Gaps = 58/629 (9%)
Query: 15 LSNEEASHLFEKIVGHSAKKSDFETIGVEIVAKCGGLPIAIKTIANALKNK-SPRIWKDA 73
L E+A LF K G + I + +CGGLP+AI T+ A++ K + ++W
Sbjct: 302 LLEEDAWELFCKNAGDVVRSDHVRKIAKAVSQECGGLPLAIITVGTAMRGKKNVKLWNHV 361
Query: 74 VNQLSNSNPRKIQGMDADLSSIELSYEFLKCKEVKSLFQLCGLLKDGSRIAVDDLLRYVM 133
+++LS S P + ++LSY+FL+ K K F LC L + I V +++RY M
Sbjct: 362 LSKLSKSVPWIKSIEEKIFQPLKLSYDFLEDK-AKFCFLLCALFPEDYSIEVTEVVRYWM 420
Query: 134 GLRLLTNADTLEAARNRVHTLIDNLKSASLLFDGDSEDHAKMHRIIHAIAVSIAAEK--- 190
+ + E + N T +++LK LL DGD D KMH ++ A+ I +
Sbjct: 421 AEGFMEELGSQEDSMNEGITTVESLKDYCLLEDGDRRDTVKMHDVVRDFAIWIMSSSQDD 480
Query: 191 ---LLFNIQNVADLKEELDKIDEAPTAISIPFRGIYELPERLG--FLKLKLFLFFTENLS 245
L+ + + D+++ DK+ + +S+ + LP+ + +K + L L
Sbjct: 481 SHSLVMSGTGLQDIRQ--DKLAPSLRRVSLMNNKLESLPDLVEEFCVKTSVLLLQGNFLL 538
Query: 246 LQIPDPFFEGMTELRVLDLTGFRFHSLPS-SLGCLINLRTLSLENCL-VVDVAIIGDLKK 303
++P F + LR+L+L+G R S PS SL L +L +L L +C +V + + L K
Sbjct: 539 KEVPIGFLQAFPTLRILNLSGTRIKSFPSCSLLRLFSLHSLFLRDCFKLVKLPSLETLAK 598
Query: 304 LEILSLKHSSIEQLPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGNSFTQ 363
LE+L L + I + PR + +L + LDLS L+ I V+S L+ LE L M +S +
Sbjct: 599 LELLDLCGTHILEFPRGLEELKRFRHLDLSRTLHLESIPARVVSRLSSLETLDMTSSHYR 658
Query: 364 WKVEGQS---NASLGELKQLSRLTTLEVHIPDAQVM--PQDLVFVELERFRICIGDVWSW 418
W V+G++ A++ E+ L RL L + + + + ++ L++F++ +G +
Sbjct: 659 WSVQGETQKGQATVEEIGCLQRLQVLSIRLHSSPFLLNKRNTWIKRLKKFQLVVGSRYIL 718
Query: 419 SDGYETSKTLKLQLNNSTY-LGYGMKMLLKRTEDLHLDELAGFKNVVHEL-DDEEGFARL 476
++ + LN S +G+ LL T L L+ G + ++ +L D +GF L
Sbjct: 719 RTRHDKRRLTISHLNVSQVSIGW----LLAYTTSLALNHCQGIEAMMKKLVSDNKGFKNL 774
Query: 477 RHLHVHNGPEILHILNSDGRV---------------GTFPLLESLFLHNLINLEKVCDGK 521
+ L + N I+N++ V P LE L L ++LE + +
Sbjct: 775 KSLTIENV-----IINTNSWVEMVSTNTSKQSSDILDLLPNLEELHLRR-VDLETFSELQ 828
Query: 522 VRLNEDDKSFSNLRIIKVEGCHRVKHLFPFSLVKNLLQLQKVKVTDCTNLKLIVGKESEN 581
L L+II++ C +++ L + L++++++ C +L+
Sbjct: 829 THLG---LKLETLKIIEITMCRKLRTLLDKRNFLTIPNLEEIEISYCDSLQ--------- 876
Query: 582 SAHKNGSISGVYFRKLHFLKLQHLPQLTS 610
+ H+ + L LKL++LP L S
Sbjct: 877 NLHEALLYHQPFVPNLRVLKLRNLPNLVS 905
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Disease resistance protein. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q42484|RPS2_ARATH Disease resistance protein RPS2 OS=Arabidopsis thaliana GN=RPS2 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 136 bits (343), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 162/615 (26%), Positives = 271/615 (44%), Gaps = 106/615 (17%)
Query: 19 EASHLFEKIVGHSAKKSDFETIGVE-----IVAKCGGLPIAIKTIANALKNK-SPRIWKD 72
E H +E +K E+ + IV+KCGGLP+A+ T+ A+ ++ + W
Sbjct: 311 EKKHAWELFCSKVWRKDLLESSSIRRLAEIIVSKCGGLPLALITLGGAMAHRETEEEWIH 370
Query: 73 AVNQLSNSNPRKIQGMDADLSSIELSYEFLKCKEVKSLFQLCGLLKDGSRIAVDDLLRYV 132
A L+ P +++GM+ + ++ SY+ L+ ++S F C L + I ++ L+ Y
Sbjct: 371 ASEVLTRF-PAEMKGMNYVFALLKFSYDNLESDLLRSCFLYCALFPEEHSIEIEQLVEYW 429
Query: 133 MGLRLLTNADTLEAARNRVHTLIDNLKSASLLFDGDSEDHAKMHRIIHAIAVSIAAEKLL 192
+G LT++ + + + LI +LK+A LL GD + KMH ++ + A+ +A+E+
Sbjct: 430 VGEGFLTSSHGVNTIY-KGYFLIGDLKAACLLETGDEKTQVKMHNVVRSFALWMASEQGT 488
Query: 193 FNIQNVADLKEELDKIDEAPTA--------ISIPFRGIYELPERLGFLKLKLFLFFTENL 244
+ L E EAP A IS+ I LPE+L KL L +N
Sbjct: 489 YK---ELILVEPSMGHTEAPKAENWRQALVISLLDNRIQTLPEKLICPKLTT-LMLQQNS 544
Query: 245 SLQ-IPDPFFEGMTELRVLDLTGFRFHSLPSSLGCLINLRTLSLENCLVVDVAIIGDLKK 303
SL+ IP FF M LRVLDL+ +P S+ L+ L LS+
Sbjct: 545 SLKKIPTGFFMHMPVLRVLDLSFTSITEIPLSIKYLVELYHLSMSG-------------- 590
Query: 304 LEILSLKHSSIEQLPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGNSFTQ 363
+ I LP+E+G L LK LDL L+ I + I L++LE L + S+
Sbjct: 591 --------TKISVLPQELGNLRKLKHLDLQRTQFLQTIPRDAICWLSKLEVLNLYYSYAG 642
Query: 364 WKVE--GQSNA---SLGELKQLSRLTTLEVHIPDAQVMPQDLVFVELERFRICIGDVWSW 418
W+++ G+ A +L+ L LTTL + +
Sbjct: 643 WELQSFGEDEAEELGFADLEYLENLTTLGITVL--------------------------- 675
Query: 419 SDGYETSKTLKLQLNNSTYLGYGMKMLLKRTEDLHLDELAGFKNVVHELDDEEGFAR-LR 477
ET KTL + L K + LH++E + L R LR
Sbjct: 676 --SLETLKTL-----------FEFGALHKHIQHLHVEECNEL--LYFNLPSLTNHGRNLR 720
Query: 478 HLHVHNGPEILHILN-SDGRVGTFPLLESLFLHNLINLEKVCDGKVRLNEDDKSFSNLRI 536
L + + ++ +++ +D P LE L LH+L NL +V V N+R
Sbjct: 721 RLSIKSCHDLEYLVTPADFENDWLPSLEVLTLHSLHNLTRVWGNSV----SQDCLRNIRC 776
Query: 537 IKVEGCHRVKHLFPFSLVKNLLQLQKVKVTDCTNLKLIVGKESENSAHKNGSISG-VYFR 595
I + C+++K++ S V+ L +L+ +++ DC ++ ++ S H++ S+ F
Sbjct: 777 INISHCNKLKNV---SWVQKLPKLEVIELFDCREIEELI------SEHESPSVEDPTLFP 827
Query: 596 KLHFLKLQHLPQLTS 610
L L+ + LP+L S
Sbjct: 828 SLKTLRTRDLPELNS 842
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Disease resistance (R) protein that specifically recognizes the AvrRpt2 type III effector avirulence protein from Pseudomonas syringae. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via an indirect interaction with this avirulence protein. That triggers a defense system including the hypersensitive response, which restricts the pathogen growth. Acts via its interaction with RIN4, and probably triggers the plant resistance when RIN4 is degraded by AvrRpt2. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LVT4|DRL37_ARATH Probable disease resistance protein At5g47250 OS=Arabidopsis thaliana GN=At5g47250 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 105 bits (263), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 106/358 (29%), Positives = 171/358 (47%), Gaps = 38/358 (10%)
Query: 7 SEDFLDWLLSNEEASHLFEKIVGHSAKKSDFETIGVEIVAKCGGLPIAIKTIANALKNKS 66
+ED LS +A LF+ V H ++ I +IVAKC GLP+A++ I + +KS
Sbjct: 305 NEDIEVQCLSENDAWDLFDMKV-HCDGLNEISDIAKKIVAKCCGLPLALEVIRKTMASKS 363
Query: 67 PRI-WKDAVNQLSNSNPRKIQGMDADLSSI-ELSYEFLKCKEVKSLFQLCGLLKDGSRIA 124
I W+ A++ L S +++G + + + +LSY++LK K K F C L I
Sbjct: 364 TVIQWRRALDTL-ESYRSEMKGTEKGIFQVLKLSYDYLKTKNAKC-FLYCALFPKAYYIK 421
Query: 125 VDDLLRYVMGLRLLTNADTLEAARNRVHTLIDNLKSASLLFDGDSEDHAKMHRIIHAIAV 184
D+L+ Y +G + D E A++R + +IDNL A LL +S MH +I +A+
Sbjct: 422 QDELVEYWIGEGFIDEKDGRERAKDRGYEIIDNLVGAGLLL--ESNKKVYMHDMIRDMAL 479
Query: 185 SIAAE---KLLFNIQNVADLKEELDKIDEAP-TAISIPFRGIYELPERLGFLKLK--LFL 238
I +E + ++ A L + D D T +S+ I +P+ F + L
Sbjct: 480 WIVSEFRDGERYVVKTDAGLSQLPDVTDWTTVTKMSLFNNEIKNIPDDPEFPDQTNLVTL 539
Query: 239 FFTENLSLQIPDPFFEGMTELRVLDLT-GFRFHSLPSSLGCLINLRTLSLENCLVVDVAI 297
F N + I FF M+ L VLDL+ F+ LP + L++LR
Sbjct: 540 FLQNNRLVDIVGKFFLVMSTLVVLDLSWNFQITELPKGISALVSLR-------------- 585
Query: 298 IGDLKKLEILSLKHSSIEQLPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEEL 355
+L+L +SI+ LP +G L+ L L+L + S L+ + +IS L +L+ L
Sbjct: 586 --------LLNLSGTSIKHLPEGLGVLSKLIHLNLESTSNLRSV--GLISELQKLQVL 633
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Probable disease resistance protein. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9C8T9|DRL19_ARATH Putative disease resistance protein At1g63350 OS=Arabidopsis thaliana GN=At1g63350 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 96.3 bits (238), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 109/412 (26%), Positives = 188/412 (45%), Gaps = 48/412 (11%)
Query: 15 LSNEEASHLFEKIVGHSAKKSDFET--IGVEIVAKCGGLPIAIKTIANALKNK-SPRIWK 71
L++ +A LF+K VG SD E + + KC GLP+A+ ++ + K + + W+
Sbjct: 309 LADNDAYDLFQKKVGQITLGSDPEIRELSRVVAKKCCGLPLALNVVSETMSCKRTVQEWR 368
Query: 72 DAVNQLSNSNPRKIQGMDAD-LSSIELSYEFLKCKEVKSLFQLCGLLKDGSRIAVDDLLR 130
A+ L NS K GMD L ++ SY+ LK ++VK C L + ++I ++L+
Sbjct: 369 HAIYVL-NSYAAKFSGMDDKILPLLKYSYDSLKGEDVKMCLLYCALFPEDAKIRKENLIE 427
Query: 131 YVMGLRLLTNADTLEAARNRVHTLIDNLKSASLLFDGDSEDHAK---MHRIIHAIAVSIA 187
Y + ++ ++ ++ A N+ + +I +L ASLL + D A +H ++ +A+ IA
Sbjct: 428 YWICEEIIDGSEGIDKAENQGYEIIGSLVRASLLMEEVELDGANIVCLHDVVREMALWIA 487
Query: 188 A----EKLLFNIQNVADLKEELDKIDEAPTA--ISIPFRGIYELPERLGFLKLKLFLFFT 241
+ + F ++ L+E L K++ +S+ I L RL ++L L +
Sbjct: 488 SDLGKQNEAFIVRASVGLREIL-KVENWNVVRRMSLMKNNIAHLDGRLDCMELTTLLLQS 546
Query: 242 ENLSLQIPDPFFEGMTELRVLDLTG-FRFHSLPSSLGCLINLRTLSLENCLVVDVAIIGD 300
+L +I FF M +L VLDL+G + LP+ I +
Sbjct: 547 THLE-KISSEFFNSMPKLAVLDLSGNYYLSELPNG----------------------ISE 583
Query: 301 LKKLEILSLKHSSIEQLPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGNS 360
L L+ L+L + I LP+ + +L L L L S+L + IS L L+ L + S
Sbjct: 584 LVSLQYLNLSSTGIRHLPKGLQELKKLIHLYLERTSQLGSMVG--ISCLHNLKVLKLSGS 641
Query: 361 FTQWKVEGQSNASLGELKQLSRLTTLEVHIPDAQVMPQDLVFVELERFRICI 412
W ++ ++ EL+ L L L I D + F+ R CI
Sbjct: 642 SYAWDLD-----TVKELEALEHLEVLTTTIDDCTLGTDQ--FLSSHRLMSCI 686
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Potential disease resistance protein. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FLB4|DRL31_ARATH Putative disease resistance protein At5g05400 OS=Arabidopsis thaliana GN=At5g05400 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 93.6 bits (231), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 93/326 (28%), Positives = 154/326 (47%), Gaps = 45/326 (13%)
Query: 40 IGVEIVAKCGGLPIAIKTIANAL-KNKSPRIWKDAVNQLSNSNPRKIQGMDADLSSI-EL 97
+ I KC GLP+A+ I + + KS W DAV S G++AD+ SI +
Sbjct: 337 VAKSIARKCNGLPLALNVIGETMARKKSIEEWHDAVGVFS--------GIEADILSILKF 388
Query: 98 SYEFLKCKEVKSLFQLCGLLKDGSRIAVDDLLRYVMGLRLLTNADTLEAARNRVHTLIDN 157
SY+ LKC++ KS F L + I DDL+ Y +G ++ + + + +T+I
Sbjct: 389 SYDDLKCEKTKSCFLFSALFPEDYEIGKDDLIEYWVGQGIILGSKGINY---KGYTIIGT 445
Query: 158 LKSASLLFDGDSEDHAKMHRIIHAIAVSIAA------EKLLFNIQNVADLKEELDKIDE- 210
L A LL + ++++ KMH ++ +A+ I++ +K + ++ A L+ ++ KI++
Sbjct: 446 LTRAYLLKESETKEKVKMHDVVREMALWISSGCGDQKQKNVLVVEANAQLR-DIPKIEDQ 504
Query: 211 -APTAISIPFRGIYELPERLGFLKLKLFL-------------------FFTENLSLQ--- 247
A +S+ + I E E L KL+ L +LSL
Sbjct: 505 KAVRRMSLIYNQIEEACESLHCPKLETLLLRDNRLRKISREFLSHVPILMVLDLSLNPNL 564
Query: 248 IPDPFFEGMTELRVLDLTGFRFHSLPSSLGCLINLRTLSLENCLVVD-VAIIGDLKKLEI 306
I P F + LR L+L+ SLP L L NL L+LE+ ++ + I DL LE+
Sbjct: 565 IELPSFSPLYSLRFLNLSCTGITSLPDGLYALRNLLYLNLEHTYMLKRIYEIHDLPNLEV 624
Query: 307 LSLKHSSIEQLPREIGQLTCLKLLDL 332
L L S I+ + + Q+ +K L L
Sbjct: 625 LKLYASGIDITDKLVRQIQAMKHLYL 650
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Potential disease resistance protein. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q7XBQ9|RGA2_SOLBU Disease resistance protein RGA2 OS=Solanum bulbocastanum GN=RGA2 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 89.7 bits (221), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 155/628 (24%), Positives = 264/628 (42%), Gaps = 114/628 (18%)
Query: 1 MQSYEYSEDFLDWLLSNEEASHLF-EKIVGHSAK-KSDFETIGVEIVAKCGGLPIAIKTI 58
+Q YE S LS E+ LF ++ GH + + IG EIV K GG+P+A KT+
Sbjct: 304 LQPYELSN------LSQEDCWLLFMQRAFGHQEEINPNLVAIGKEIVKKSGGVPLAAKTL 357
Query: 59 ANALK-NKSPRIWKDAVNQLSNSNPRKIQGMDADLSSIELSYEFLKCKEVKSLFQLCGLL 117
L + R W+ + + P Q + L ++ LSY L ++K F C +
Sbjct: 358 GGILCFKREERAWEHVRDSPIWNLP---QDESSILPALRLSYHQLPL-DLKQCFAYCAVF 413
Query: 118 KDGSRIAVDDLLRYVM--GLRLLTNADTLEAARNRVHTLIDNLKSASLLFDGDSEDHAKM 175
+++ + L+ M G L LE + V + + D + + KM
Sbjct: 414 PKDAKMEKEKLISLWMAHGFLLSKGNMELEDVGDEVWKELYLRSFFQEIEVKDGKTYFKM 473
Query: 176 HRIIHAIAVSIAAEKLLFNIQNVADLKEELDKIDEAPTAISIPFRGI---YELPERLGFL 232
H +IH +A S LF+ + E++K +SI F + Y LP F+
Sbjct: 474 HDLIHDLATS------LFSANTSSSNIREINK-HSYTHMMSIGFAEVVFFYTLPPLEKFI 526
Query: 233 KLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPSSLGCLINLRTLSLENC-- 290
L++ L ++ ++P + + LR L+L G SLP L L NL+TL L+ C
Sbjct: 527 SLRV-LNLGDSTFNKLPSSIGD-LVHLRYLNLYGSGMRSLPKQLCKLQNLQTLDLQYCTK 584
Query: 291 ---LVVDVAIIGDLKKLEILSLKHSSIEQLPREIGQLTCLKLL----------------- 330
L + + +G L+ L L S+ +P IG LTCLK L
Sbjct: 585 LCCLPKETSKLGSLRNL--LLDGSQSLTCMPPRIGSLTCLKTLGQFVVGRKKGYQLGELG 642
Query: 331 --------DLSNCSKLKEIRPNVISNLT---RLEELYMG-NSFTQWKVEGQSNASLGELK 378
+S+ ++K + +NL+ L L M N+F E + L LK
Sbjct: 643 NLNLYGSIKISHLERVKNDKDAKEANLSAKGNLHSLSMSWNNFGPHIYESEEVKVLEALK 702
Query: 379 QLSRLTTLEV------HIPD--AQVMPQDLVFVELERFRIC-----IGDVWSWSDGYETS 425
S LT+L++ H+P+ + +++V + + FR C GD+
Sbjct: 703 PHSNLTSLKIYGFRGIHLPEWMNHSVLKNIVSILISNFRNCSCLPPFGDL-------PCL 755
Query: 426 KTLKLQLNNSTYLGYGMKMLLKRTEDLHLDELAGFKNVVHELDDEEGFARLRHLHVHNGP 485
++L+L ++ ++ E++ +D +GF + F LR L + +
Sbjct: 756 ESLELHWGSAD---------VEYVEEVDIDVHSGFPTRIR-------FPSLRKLDIWDFG 799
Query: 486 EILHILNSDGRVGTFPLLESLFLHNLINLEKVCDGKVRLNEDDKSFSNLRIIKVEGCH-R 544
+ +L +G FP+LE + +H L L+ + ++ ++LRI C+ +
Sbjct: 800 SLKGLLKKEGE-EQFPVLEEMIIHECPFL--------TLSSNLRALTSLRI-----CYNK 845
Query: 545 VKHLFPFSLVKNLLQLQKVKVTDCTNLK 572
V FP + KNL L+ + ++ C NLK
Sbjct: 846 VATSFPEEMFKNLANLKYLTISRCNNLK 873
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Disease resistance protein. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via a direct or indirect interaction with this avirulence protein. That triggers a defense system which restricts the pathogen growth. Confers a broad resistance to all known races of P.infestans. Solanum bulbocastanum (taxid: 147425) |
| >sp|Q9SI85|DRL14_ARATH Probable disease resistance protein At1g62630 OS=Arabidopsis thaliana GN=At1g62630 PE=3 SV=2 | Back alignment and function description |
|---|
Score = 85.1 bits (209), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 143/613 (23%), Positives = 264/613 (43%), Gaps = 94/613 (15%)
Query: 20 ASHLFEKIVGHSAKKSD--FETIGVEIVAKCGGLPIAIKTIANALKNK-SPRIWKDAVNQ 76
A LF+K VG SD + + KC GLP+A+ I + K + + W++A++
Sbjct: 314 AFDLFQKKVGQKTLGSDPGIPQLARIVAKKCCGLPLALNVIGETMSCKRTIQEWRNAIHV 373
Query: 77 LSNSNPRKIQGM-DADLSSIELSYEFLKCKEVKSLFQLCGLLKDGSRIAVDDLLRYVMGL 135
L NS + GM D L ++ SY+ LK + VKS C L + ++I +DL+ + +
Sbjct: 374 L-NSYAAEFIGMEDKILPLLKYSYDNLKGEHVKSSLLYCALYPEDAKIRKEDLIEHWICE 432
Query: 136 RLLTNADTLEAARNRVHTLIDNLKSASLLF---DGDSEDHAKMHRIIHAIAVSIAAEKLL 192
++ ++ +E A ++ + +I +L ASLL D + MH ++ +A+ IA+E
Sbjct: 433 EIIDGSEGIEKAEDKGYDIIGSLVRASLLMECVDLKGKSSVIMHDVVREMALWIASE--- 489
Query: 193 FNIQNVADLKEELDKIDEAPTA--------ISIPFRGIYELPERLGFLKL-KLFLFFTEN 243
IQ A + + E P +S+ I+ L ++L L L E
Sbjct: 490 LGIQKEAFIVRAGVGVREIPKVKNWNVVRRMSLMGNKIHHLVGSYECMELTTLLLGEGEY 549
Query: 244 LSL-------QIPDPFFEGMTELRVLDLTGFR-FHSLPSSLGCLINLRTLSLENCLVVDV 295
S+ I FF M +L VLDL+ + LP + L++L+
Sbjct: 550 GSIWRWSEIKTISSEFFNCMPKLAVLDLSHNQSLFELPEEISNLVSLK------------ 597
Query: 296 AIIGDLKKLEILSLKHSSIEQLPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEEL 355
L+L H+ I L + I +L + L+L + SKL+ I + IS+L L+ L
Sbjct: 598 ----------YLNLSHTGIRHLSKGIQELKKIIHLNLEHTSKLESI--DGISSLHNLKVL 645
Query: 356 YMGNSFTQWKVEGQSNASLGELKQLSRLTTLEVHIPDAQVMPQDLVFVELERFRICIGDV 415
+ S W L +K+L L LE I + P+ F+ R
Sbjct: 646 KLYGSRLPW--------DLNTVKELETLEHLE--ILTTTIDPRAKQFLSSHRL------- 688
Query: 416 WSWSDGYETSKTLKLQLNNSTYLGYGMKMLLKRTEDLHLDELAGFKNVVHELDDEE---- 471
S++ LQ+ S ++ + + D+L F+ + + + +
Sbjct: 689 --------MSRSRLLQIFGSNIFSPDRQL---ESLSVSTDKLREFEIMCCSISEIKMGGI 737
Query: 472 -GFARLRHLHVHN--GPEILHILNSDGRVGTFPLLESLFLHNLINLEKVCDGKVRLNEDD 528
F L + ++N G L L ++ + ++++ L ++IN EK C+G+ +
Sbjct: 738 CNFLSLVDVTIYNCEGLRELTFLIFAPKLRSLSVVDAKDLEDIINEEKACEGE---DSGI 794
Query: 529 KSFSNLRIIKVEGCHRVKHLFPFSLVKNLLQLQKVKVTDCTNLKLIVGKESENSAHKNGS 588
F L+ + ++ ++K+++ L L L+K+ + +C NL+ + +NG
Sbjct: 795 VPFPELKYLNLDDLPKLKNIYRRPL--PFLCLEKITIGECPNLRKLPLDSRSGKQGENGC 852
Query: 589 ISGVYFRKLHFLK 601
I ++++ +LK
Sbjct: 853 I--IHYKDSRWLK 863
|
Probable disease resistance protein. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q8RXS5|DRL40_ARATH Probable disease resistance protein At5g63020 OS=Arabidopsis thaliana GN=At5g63020 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 83.6 bits (205), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 93/331 (28%), Positives = 167/331 (50%), Gaps = 20/331 (6%)
Query: 15 LSNEEASHLFEKIVGHSAKKS--DFETIGVEIVAKCGGLPIAIKTIANALKNK-SPRIWK 71
L+ ++A LF K VG S + T+ + KC GLP+A+ I + K + + W+
Sbjct: 311 LAPDDAWDLFTKKVGEITLGSHPEIPTVARTVAKKCRGLPLALNVIGETMAYKRTVQEWR 370
Query: 72 DAVNQLSNSNPRKIQGM-DADLSSIELSYEFLKCKEVKSLFQLCGLLKDGSRIAVDDLLR 130
A++ L++S + GM D L ++ SY+ LK +++K FQ C L + I +DL+
Sbjct: 371 SAIDVLTSSAA-EFSGMEDEILPILKYSYDNLKSEQLKLCFQYCALFPEDHNIEKNDLVD 429
Query: 131 YVMGLRLLTNADTLEAARNRVHTLIDNLKSASLLFDGDSEDHAKMHRIIHAIAVSIAA-- 188
Y +G + A N+ + +I L + LL + ++++ KMH ++ +A+ IA+
Sbjct: 430 YWIGEGFIDRNKG--KAENQGYEIIGILVRSCLLME-ENQETVKMHDVVREMALWIASDF 486
Query: 189 --EKLLFNIQNVADLKEE-LDKIDEAPTA--ISIPFRGIYELPERLGFLKLKLFLFFTEN 243
+K F +Q A L+ + +I++ A +S+ F I + + +L + L +N
Sbjct: 487 GKQKENFIVQ--AGLQSRNIPEIEKWKVARRVSLMFNNIESIRDAPESPQL-ITLLLRKN 543
Query: 244 LSLQIPDPFFEGMTELRVLDLTGFR-FHSLPSSLGCLINLRTLSLENCLV-VDVAIIGDL 301
I FF M L VLDL+ R LP+ + ++L+ LSL + + A + +L
Sbjct: 544 FLGHISSSFFRLMPMLVVLDLSMNRDLRHLPNEISECVSLQYLSLSRTRIRIWPAGLVEL 603
Query: 302 KKLEILSLKHSSIEQLPREIGQLTCLKLLDL 332
+KL L+L+++ + + I LT LK+L L
Sbjct: 604 RKLLYLNLEYTRMVESICGISGLTSLKVLRL 634
|
Probable disease resistance protein. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q7XA42|RGA1_SOLBU Putative disease resistance protein RGA1 OS=Solanum bulbocastanum GN=RGA1 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 83.6 bits (205), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 97/345 (28%), Positives = 158/345 (45%), Gaps = 38/345 (11%)
Query: 1 MQSYEYSEDFLDWLLSNEEASHLF-EKIVGHSAK-KSDFETIGVEIVAKCGGLPIAIKTI 58
+Q YE S LS E+ LF ++ GH + + IG EIV KCGG+P+A KT+
Sbjct: 303 LQPYELSN------LSPEDCWFLFMQRAFGHQEEINPNLMAIGKEIVKKCGGVPLAAKTL 356
Query: 59 ANALK-NKSPRIWKDAVNQLSNSNPRKIQGMDADLSSIELSYEFLKCKEVKSLFQLCGLL 117
L+ + R W+ + + P Q + L ++ LSY L +++ F C +
Sbjct: 357 GGILRFKREEREWEHVRDSPIWNLP---QDESSILPALRLSYHHLPL-DLRQCFVYCAVF 412
Query: 118 KDGSRIAVDDLLRYVMGLRLLTNADTLEAARNRVHTLIDNLKSASLLFDGDSED---HAK 174
+++A ++L+ + M L + LE + + + + L S + + E + K
Sbjct: 413 PKDTKMAKENLIAFWMAHGFLLSKGNLE-LEDVGNEVWNELYLRSFFQEIEVESGKTYFK 471
Query: 175 MHRIIHAIAVSIAAEKLLFNIQNVADLKEELDKIDEAPTAISIPFRGI---YELPERLGF 231
MH +IH +A S+ + + N+ ++ D +SI F + Y F
Sbjct: 472 MHDLIHDLATSLFSANT--SSSNIREINANYDGY-----MMSIGFAEVVSSYSPSLLQKF 524
Query: 232 LKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTG-FRFHSLPSSLGCLINLRTLSLE-- 288
+ L++ NL+ Q+P + + LR LDL+G FR +LP L L NL+TL L
Sbjct: 525 VSLRVLNLRNSNLN-QLPSSIGD-LVHLRYLDLSGNFRIRNLPKRLCKLQNLQTLDLHYC 582
Query: 289 ---NCLVVDVAIIGDLKKLEILSLKHSSIEQLPREIGQLTCLKLL 330
+CL + +G L+ L L S+ P IG LTCLK L
Sbjct: 583 DSLSCLPKQTSKLGSLRN---LLLDGCSLTSTPPRIGLLTCLKSL 624
|
Disease resistance protein. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via a direct or indirect interaction with this avirulence protein. That triggers a defense system which restricts the pathogen growth. Solanum bulbocastanum (taxid: 147425) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 840 | ||||||
| 255563252 | 1603 | Disease resistance protein RPS5, putativ | 0.921 | 0.482 | 0.466 | 1e-171 | |
| 224111296 | 1315 | cc-nbs-lrr resistance protein [Populus t | 0.929 | 0.593 | 0.450 | 1e-171 | |
| 224111284 | 1340 | cc-nbs-lrr resistance protein [Populus t | 0.9 | 0.564 | 0.453 | 1e-161 | |
| 296087872 | 1152 | unnamed protein product [Vitis vinifera] | 0.914 | 0.666 | 0.418 | 1e-160 | |
| 224143316 | 1337 | cc-nbs-lrr resistance protein [Populus t | 0.927 | 0.582 | 0.443 | 1e-159 | |
| 224083434 | 1144 | cc-nbs-lrr resistance protein [Populus t | 0.934 | 0.686 | 0.419 | 1e-154 | |
| 359488027 | 1520 | PREDICTED: disease resistance protein At | 0.889 | 0.491 | 0.412 | 1e-151 | |
| 255542484 | 2460 | phosphoprotein phosphatase, putative [Ri | 0.940 | 0.321 | 0.418 | 1e-149 | |
| 147865073 | 1694 | hypothetical protein VITISV_021876 [Viti | 0.875 | 0.433 | 0.412 | 1e-141 | |
| 359488095 | 1347 | PREDICTED: probable disease resistance p | 0.901 | 0.561 | 0.401 | 1e-139 |
| >gi|255563252|ref|XP_002522629.1| Disease resistance protein RPS5, putative [Ricinus communis] gi|223538105|gb|EEF39716.1| Disease resistance protein RPS5, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 610 bits (1573), Expect = e-171, Method: Compositional matrix adjust.
Identities = 382/818 (46%), Positives = 518/818 (63%), Gaps = 44/818 (5%)
Query: 14 LLSNEEASHLFEKIVGHSAKKSDFETIGVEIVAKCGGLPIAIKTIANALKNKSPRIWKDA 73
+L EEA LFE +VG K +F++ E+ KC GLP+ I TIA ALKNK +WKDA
Sbjct: 309 VLQEEEALSLFEMMVG-DVKGGEFQSAASEVTKKCAGLPVLIVTIARALKNKDLYVWKDA 367
Query: 74 VNQLSNSNPRKIQGMDADLSSIELSYEFLKCKEVKSLFQLCGLLKDGSRIAVDDLLRYVM 133
V QLS + +IQ + S++ELSY L EVKSLF LCGLL S IA+ DLL Y
Sbjct: 368 VKQLSRCDNEEIQ--EKVYSALELSYNHLIGAEVKSLFLLCGLLGK-SDIAILDLLMYST 424
Query: 134 GLRLLTNADTLEAARNRVHTLIDNLKSASLLFDGDSEDHAKMHRIIHAIAVSIAAE-KLL 192
GL L DTL ARNRVH LI +LK+A LL D D + K+H ++ +A+SIA+ + L
Sbjct: 425 GLGLFKGIDTLGDARNRVHKLISDLKAACLLLDSDIKGRVKIHDVVRDVAISIASRMQHL 484
Query: 193 FNIQNVADLKEELDK-IDEAPTAISIPFRGIYELPERLGFLKLKLFLFFTENLSLQIPDP 251
F ++N A LKE +K + ++ T IS+P+ I+ LPE L +L+LFL FT+++SL++PD
Sbjct: 485 FTVRNGALLKEWPNKDVCKSCTRISLPYNDIHGLPEVLECPELELFLLFTQDISLKVPDL 544
Query: 252 FFEGMTELRVLDLTGFRFHSLPSSLGCLINLRTLSLENCLVVDVAIIGDLKKLEILSLKH 311
FE LRVL+ TG F SLP SLG L NL TL L+ C + DVAIIG+L L ILS KH
Sbjct: 545 CFELTKNLRVLNFTGMHFSSLPPSLGFLKNLFTLCLDWCALRDVAIIGELTGLTILSFKH 604
Query: 312 SSIEQLPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGNSFTQWKVEG--- 368
S I +LPREI QLT LK LDLS+C KLK I +IS LT+LEELYM NSF W V+G
Sbjct: 605 SDIVELPREIRQLTKLKFLDLSHCLKLKVIPAKIISELTQLEELYMNNSFDLWDVQGINN 664
Query: 369 QSNASLGELKQLSRLTTLEVHIPDAQVMPQDLVFVELERFRICIGDVWSWSDGYETSKTL 428
Q NASL EL+ L LTTLE+ + DA+++P+DL F +LERFRI IGDVWS + Y TS+TL
Sbjct: 665 QRNASLAELECLPYLTTLEICVLDAKILPKDLFFRKLERFRIFIGDVWSGTGDYGTSRTL 724
Query: 429 KLQLNNST-YLGYGMKMLLKRTEDLHLDELAGFKNVVHELDDEEGFARLRHLHVHNGPEI 487
KL+LN S+ +L +G+ +LL+ TEDL+L E+ G K+V+++LD +GF +L+HL V N PEI
Sbjct: 725 KLKLNTSSIHLEHGLSILLEVTEDLYLAEVKGIKSVLYDLDS-QGFTQLKHLDVQNDPEI 783
Query: 488 LHILNSDGR--VGTFPLLESLFLHNLINLEKVCDGKVRLNEDDKSFSNLRIIKVEGCHRV 545
+I++ + R FP+LESL+L NL++LEK+C GK+ SFS LR + V C R+
Sbjct: 784 QYIIDPNRRSPCNAFPILESLYLDNLMSLEKICCGKLTTG----SFSKLRSLTVVKCDRL 839
Query: 546 KHLFPFSLVKNLLQLQKVKVTDCTNLKLIVGKESENSAHKNGSISGVYFRKLHFLKLQHL 605
K+LF FS+++ LLQLQ++KV DC NL+ IV SE++ + V +L L L+ L
Sbjct: 840 KNLFSFSMMRCLLQLQQMKVVDCANLEEIVACGSEDT---DNDYEAVKLTQLCSLTLKRL 896
Query: 606 P---------QLTSSGFDLETPTNTQGSNPGIIAEGDPKDFTSLFNERVVFPSLKKLKLS 656
P +++ ++ T I +G+ D LFNE FP+L+ L+LS
Sbjct: 897 PMFKSFCSKKKVSPISLRVQKQLTTDTGLKEIAPKGELGDPLPLFNEMFCFPNLENLELS 956
Query: 657 SINVEKIWLNSFSAIESWGKNLTKLTVEKCGRLKFLFSSSMVNGLEQLQQLDISHCKSMN 716
SI EKI + SAI S NL L VE+C LK+LF+SS+V L L++L++ C S+
Sbjct: 957 SIACEKICDDQLSAISS---NLMSLIVERCWNLKYLFTSSLVKNLLLLKRLEVFDCMSVE 1013
Query: 717 EVI-NTRVGRDDNMIEMVFPKLVSLQLSHLPKLTRFGIGDSVEFPSLCQLQIACCPNLKI 775
+I + ++ + +FP+L L+L +LP +TRF G VEF SL +L I CP L +
Sbjct: 1014 GIIVAEELVEEERNRKKLFPELDFLKLKNLPHITRFCDGYPVEFSSLRKLLIENCPALNM 1073
Query: 776 FICSC----------TEEMSSEKNIHTTQTQPLFDEKV 803
F+ + M+SEKN H T+TQPLF+EKV
Sbjct: 1074 FVSKSPSADMIESREAKGMNSEKN-HHTETQPLFNEKV 1110
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224111296|ref|XP_002332952.1| cc-nbs-lrr resistance protein [Populus trichocarpa] gi|222834264|gb|EEE72741.1| cc-nbs-lrr resistance protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 610 bits (1572), Expect = e-171, Method: Compositional matrix adjust.
Identities = 370/821 (45%), Positives = 505/821 (61%), Gaps = 40/821 (4%)
Query: 7 SEDFLDWLLSNEEASHLFEKIVGHSAKKSDFETIGVEIVAKCGGLPIAIKTIANALKNKS 66
+ +F +L EA +LFEK+VG + KK + E+ +C GLPI + T+A ALKNK
Sbjct: 295 NRNFPIQVLPASEAWNLFEKMVGVAVKKHSVRLVAAEVARRCAGLPILLATVARALKNKD 354
Query: 67 PRIWKDAVNQLSNSNPRKIQGMDADLSSIELSYEFLKCKEVKSLFQLCGLLKDGSRIAVD 126
WK A+ QL+ + I D +ELSY+ L+ E+KSLF LCG L+ + I +
Sbjct: 355 LYAWKKALKQLTRFDKDDID--DQVYLGLELSYKSLRGDEIKSLFLLCGQLRSNN-ILIS 411
Query: 127 DLLRYVMGLRLLTNADTLEAARNRVHTLIDNLKSASLLFDGDSEDHAKMHRIIHAIAVSI 186
DLLRY +GL L TLE RN + TL+D LK++ LL +GD + KMH ++H+ A+S+
Sbjct: 412 DLLRYGIGLDLFKGCSTLEETRNSLLTLVDELKASCLLLEGDKDGSVKMHDVVHSFAISV 471
Query: 187 AAEKLLFNIQNVADLKEELDKID--EAPTAISIPFRGIYELPERLGFLKLKLFLFFTENL 244
A ++ VAD +E D + TAIS+PFR I +LP L L FL ++
Sbjct: 472 ALRD--HHVLTVADEFKEWPANDVLQQYTAISLPFRKIPDLPAILECPNLNSFLLLNKDP 529
Query: 245 SLQIPDPFFEGMTELRVLDLTGFRFHSLPSSLGCLINLRTLSLENCLVVDVAIIGDLKKL 304
SLQIPD FF M EL++LDLT LPSSL L NL+TL L++C++ D++IIG+L KL
Sbjct: 530 SLQIPDSFFREMKELKILDLTEVNLSPLPSSLQFLENLQTLCLDHCVLEDISIIGELNKL 589
Query: 305 EILSLKHSSIEQLPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGNSFTQW 364
++LSL S+I +LPREIG++T L+LLDLSNC +L+ I PN +S+LTRLE+LYMGNSF +W
Sbjct: 590 KVLSLMSSNIVRLPREIGKVTRLQLLDLSNCERLEVISPNALSSLTRLEDLYMGNSFVKW 649
Query: 365 KVEGQS----NASLGELKQLSRLTTLEVHIPDAQVMPQDLV--FVELERFRICIGDVWSW 418
+ EG S NA L ELK LS L+TL + I DA MP+DL F LERFRI IGD W W
Sbjct: 650 ETEGSSSQRNNACLSELKHLSNLSTLHMQITDADNMPKDLFSSFQNLERFRIFIGDGWDW 709
Query: 419 SDGYETSKTLKLQLNNSTYLGYGMKMLLKRTEDLHLDELAGFKNVVHELDDEEGFARLRH 478
S TS+TLKL+LN L G+ LLK TE+LHL EL G K+++++LD EGF +LRH
Sbjct: 710 SVKDATSRTLKLKLNTVIQLEEGVNTLLKITEELHLQELNGVKSILNDLDG-EGFPQLRH 768
Query: 479 LHVHNGPEILHILNS--DGRVGTFPLLESLFLHNLINLEKVCDGKVRLNEDDKSFSNLRI 536
LHV N P + +I+NS G F L+SLFL NL NLEK+C G++ +S NLRI
Sbjct: 769 LHVQNCPGVQYIINSIRMGPRTAFLNLDSLFLENLDNLEKICHGQLMA----ESLGNLRI 824
Query: 537 IKVEGCHRVKHLFPFSLVKNLLQLQKVKVTDCTNLKLIVGKESENSAHKNGSISGVYFRK 596
+KVE CHR+K+LF S+ + L++L+++ + DC ++ +V +ESEN A I + F +
Sbjct: 825 LKVESCHRLKNLFSVSMARRLVRLEEITIIDCKIMEEVVAEESENDAADGEPI--IEFTQ 882
Query: 597 LHFLKLQHLPQLTSSGFDLETPTNTQGSNPGIIAEGDPKDFT---------SLFNERVVF 647
L L LQ LPQ TS ++E +++Q + +E K+ SLFN +++F
Sbjct: 883 LRRLTLQCLPQFTSFHSNVEESSDSQRRQKLLASEARSKEIVAGNELGTSMSLFNTKILF 942
Query: 648 PSLKKLKLSSINVEKIWLNSFSAIESWGKNLTKLTVEKCGRLKFLFSSSMVNGLEQLQQL 707
P+L+ LKLSSI VEKIW + S KNL + VE C L +L +SSMV L QL++L
Sbjct: 943 PNLEDLKLSSIKVEKIWHDQPSVQSPCVKNLASIAVENCRNLNYLLTSSMVESLAQLKKL 1002
Query: 708 DISHCKSMNE-VINTRVGRDDNMIEMVFPKLVSLQLSHLPKLTRFGIGDSVEFPSLCQLQ 766
+I +CKSM E V+ +G M +M+FPKL+ L L LPKLTRF + +E SL L
Sbjct: 1003 EICNCKSMEEIVVPEDIGEGKMMSKMLFPKLLILSLIRLPKLTRFCTSNLLECHSLKVLT 1062
Query: 767 IACCPNLKIFI----CSCTEEMSSEKNIHTTQTQPLFDEKV 803
+ CP LK FI + MS N + LFD+KV
Sbjct: 1063 VGNCPELKEFISIPSSADVPAMSKPDNTKSA----LFDDKV 1099
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224111284|ref|XP_002332949.1| cc-nbs-lrr resistance protein [Populus trichocarpa] gi|222834261|gb|EEE72738.1| cc-nbs-lrr resistance protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 575 bits (1482), Expect = e-161, Method: Compositional matrix adjust.
Identities = 356/785 (45%), Positives = 488/785 (62%), Gaps = 29/785 (3%)
Query: 7 SEDFLDWLLSNEEASHLFEKIVGHSAKKSDFETIGVEIVAKCGGLPIAIKTIANALKNKS 66
+ +F +L EA + FEK+VG + K + + E+ +C GLPI + T+A ALKN+
Sbjct: 295 NRNFQVQVLPVREAWNFFEKMVGVTVKNPSVQPVAAEVAKRCAGLPILLATVARALKNED 354
Query: 67 PRIWKDAVNQLSNSNPRKIQGMDADLSSIELSYEFLKCKEVKSLFQLCG--LLKDGSRIA 124
WKDA+ QL+ + +I + S +ELSY+ L+ E+KSLF LCG L D S
Sbjct: 355 LYAWKDALKQLTRFDKDEID--NQVYSCLELSYKALRGDEIKSLFLLCGQFLTYDSS--- 409
Query: 125 VDDLLRYVMGLRLLTNADTLEAARNRVHTLIDNLKSASLLFDGDSEDHAKMHRIIHAIAV 184
+ DLL+Y +GL L TLE ARNR+ TL+D LK++ LL +GD + KMH ++ + A
Sbjct: 410 ISDLLKYAIGLDLFKGRSTLEEARNRLRTLVDELKASCLLLEGDKDGRVKMHDVVQSFAF 469
Query: 185 SIAAEKLLFNIQNVADLKEELDKID--EAPTAISIPFRGIYELPERLGFLKLKLFLFFTE 242
S+A+ ++ VAD +E D + TAIS+P+R I +LP L L F+ +
Sbjct: 470 SVASRD--HHVLIVADEFKEWPTSDVLQQYTAISLPYRKIPDLPAILECPNLNSFILLNK 527
Query: 243 NLSLQIPDPFFEGMTELRVLDLTGFRFHSLPSSLGCLINLRTLSLENCLVVDVAIIGDLK 302
+ SLQIPD FF M EL+VLDLT LPSSL L NL+TL L+ C++ D++I+G+LK
Sbjct: 528 DPSLQIPDNFFREMKELKVLDLTRVNLSPLPSSLQFLENLQTLCLDGCVLEDISIVGELK 587
Query: 303 KLEILSLKHSSIEQLPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGNSFT 362
KL++LSL S I LPREIG+LT L LLDLSNC +L+ I PNV+S+LTRLEELYMGNSF
Sbjct: 588 KLKVLSLISSDIVCLPREIGKLTRLLLLDLSNCERLEVISPNVLSSLTRLEELYMGNSFV 647
Query: 363 QWKVEGQS----NASLGELKQLSRLTTLEVHIPDAQVMPQDLVFV--ELERFRICIGDVW 416
+W+ EG S NA L ELK+LS L TL + I DA M +DL F+ +LERFRI IGD W
Sbjct: 648 KWETEGSSSQRNNACLSELKRLSNLITLHMQITDADNMLKDLSFLFQKLERFRIFIGDGW 707
Query: 417 SWSDGYETSKTLKLQLNNSTYLGYGMKMLLKRTEDLHLDELAGFKNVVHELDDEEGFARL 476
WS Y TS+TLKL+LN L + LLK TE+LHL EL G K+++++LD E+ F RL
Sbjct: 708 DWSVKYATSRTLKLKLNTVIQLEEWVNTLLKSTEELHLQELKGVKSILNDLDGED-FPRL 766
Query: 477 RHLHVHNGPEILHILNS--DGRVGTFPLLESLFLHNLINLEKVCDGKVRLNEDDKSFSNL 534
+HLHV N P + +I+NS G F L+SLFL NL NLEK+C G++ +S L
Sbjct: 767 KHLHVQNCPGVQYIINSIRMGPRTAFLNLDSLFLENLDNLEKICHGQLMA----ESLGKL 822
Query: 535 RIIKVEGCHRVKHLFPFSLVKNLLQLQKVKVTDCTNLKLIVGKESENSAHKNGSISGVYF 594
RI+KVE CHR+K+LF S+ + L++L+++ + DC ++ +V +ESEN I F
Sbjct: 823 RILKVESCHRLKNLFSVSMARRLVRLEEITIIDCKIMEEVVAEESENDTADGEPIE---F 879
Query: 595 RKLHFLKLQHLPQLTSSGFDLETP-TNTQGSNPGIIAEGDPKDFTSLFNERVVFPSLKKL 653
+L L LQ LPQ TS + + + I+A + SLFN +++FP+L+ L
Sbjct: 880 AQLRRLTLQCLPQFTSFHSNRRQKLLASDVRSKEIVAGNELGTSMSLFNTKILFPNLEDL 939
Query: 654 KLSSINVEKIWLNSFSAIESWGKNLTKLTVEKCGRLKFLFSSSMVNGLEQLQQLDISHCK 713
KLSSI VEKIW + + KNL + VE C L +L +SSMV L QL++L+I +C+
Sbjct: 940 KLSSIKVEKIWHDQPAVQPPCVKNLASMVVESCSNLNYLLTSSMVESLAQLERLEICNCE 999
Query: 714 SMNE-VINTRVGRDDNMIEMVFPKLVSLQLSHLPKLTRFGIGDSVEFPSLCQLQIACCPN 772
SM E V+ +G M +M+FPKL L+LS LPKLTRF + +E SL L + CP
Sbjct: 1000 SMEEIVVPEGIGEGKMMSKMLFPKLHLLELSGLPKLTRFCTSNLLECHSLKVLMVGNCPE 1059
Query: 773 LKIFI 777
LK FI
Sbjct: 1060 LKEFI 1064
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|296087872|emb|CBI35155.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 572 bits (1473), Expect = e-160, Method: Compositional matrix adjust.
Identities = 356/851 (41%), Positives = 516/851 (60%), Gaps = 83/851 (9%)
Query: 15 LSNEEASHLFEKIVGHSAKKSDFETIGVEIVAKCGGLPIAIKTIANALKNKSPRIWKDAV 74
L EEA LF+K+ G S ++ D ++I +++ +C GLPIAI T+A ALKNK IW+DA+
Sbjct: 128 LQEEEALILFKKMAGDSIEEPDLQSIAIDVAKECAGLPIAIVTVAKALKNKGLSIWEDAL 187
Query: 75 NQLSNSNPRKIQGMDADL-SSIELSYEFLKCKEVKSLFQLCGLLKDGSRIAVDDLLRYVM 133
QL S P I+GMDA + S++ELSY+ L+ EVKSLF LCGL+ + +I +DDLL+Y M
Sbjct: 188 RQLKRSIPTNIKGMDAMVYSTLELSYKHLEGDEVKSLFLLCGLMSN--KIYIDDLLKYGM 245
Query: 134 GLRLLTNADTLEAARNRVHTLIDNLKSASLLFDGDSEDHAKMHRIIHAIAVSIAAEKLLF 193
GLRL +TLE A+NR+ TL+D+LK++ LL D +MH ++ +A++I ++
Sbjct: 246 GLRLFQGTNTLEEAKNRIDTLVDSLKASKLLLDTGHNSFVRMHDVVRDVAIAIVSK---- 301
Query: 194 NIQNVADLKE----ELDKIDEAPTA--ISIPFRGIYELPERLGFLKLKLFLFF-TENLSL 246
+ V L+E E K+DE T +S+ + I ELP L +L+LFLF+ T + L
Sbjct: 302 -VHRVFSLREDELVEWPKMDELQTCTKMSLAYNDICELPIELVCPELELFLFYHTIDYHL 360
Query: 247 QIPDPFFEGMTELRVLDLTGFRFHSLPSSLGCLINLRTLSLENCLVVDVAIIGDLKKLEI 306
+IP+ FFE M +L+VLDL+ F SLPSSL CL NLRTLSL C + D++II +LKKLE
Sbjct: 361 KIPETFFEEMKKLKVLDLSNMHFTSLPSSLRCLTNLRTLSLNWCKLGDISIIVELKKLEF 420
Query: 307 LSLKHSSIEQLPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGNSFTQWKV 366
S S+IE+LPREI QLT L+L DL +CSKL+EI PNVIS+L++LE L M NSFT W+V
Sbjct: 421 FSFMGSNIEKLPREIAQLTHLRLFDLRDCSKLREIPPNVISSLSKLENLCMENSFTLWEV 480
Query: 367 EGQSNASLGELKQLSRLTTLEVHIPDAQVMPQDLVFVELERFRICIGDVWSWSDGYETSK 426
EG+SNAS+ E K L LTTL++ IPDA+++ D++F +L R+RI IGDVWSW T+K
Sbjct: 481 EGKSNASIAEFKYLPYLTTLDIQIPDAELLLTDVLFEKLIRYRIFIGDVWSWDKNCPTTK 540
Query: 427 TLKL-QLNNSTYLGYGMKMLLKRTEDLHLDELAGFKNVVHELDDEEGFARLRHLHVHNGP 485
TLKL +L+ S L G+ +LLK +DLHL EL+G NV +L D EGF +L+ LHV P
Sbjct: 541 TLKLNKLDTSLRLADGISLLLKGAKDLHLRELSGAANVFPKL-DREGFLQLKCLHVERSP 599
Query: 486 EILHILNSDGRV---GTFPLLESLFLHNLINLEKVCDGKVRLNEDDKSFSNLRIIKVEGC 542
E+ HI+NS + FP+LESLFL+ LINL++VC G++ + SFS LRI+KVE C
Sbjct: 600 EMQHIMNSMDPILSPCAFPVLESLFLNQLINLQEVCHGQLLVG----SFSYLRIVKVEYC 655
Query: 543 HRVKHLFPFSLVKNLLQLQKVKVTDCTNLKLIVGKESENSAHKNGSISGVYFRKLHFLKL 602
+K LF S+ + L +L+K+++T C N+ +V + E+ + ++ + F +L +L L
Sbjct: 656 DGLKFLFSMSMARGLSRLEKIEITRCKNMYKMVAQGKEDG---DDAVDAILFAELRYLTL 712
Query: 603 QHLPQLTSSGFDLETPTNTQGSNP-------GIIAEGDPKDFTSLFNERVVFPS------ 649
QHLP+L + + +T +T +P GI +EG+ + TS+FN+ V S
Sbjct: 713 QHLPKLRNFCLEGKTMPSTTKRSPTTNVRFNGICSEGELDNQTSVFNQLVCHSSIILSNY 772
Query: 650 -LKKLK------------------LSSINV-EKIWLNSFSAI---------ESWGK---- 676
LK+L+ + INV E + + S + + W K
Sbjct: 773 MLKRLQSLQFLKAVDCSSLEEVFDMEGINVKEAVAVTQLSKLILQFLPKVKQIWNKEPRG 832
Query: 677 -----NLTKLTVEKCGRLKFLFSSSMVNGLEQLQQLDISHCKSMNEVINTRVGRDDNMIE 731
NL + +++C LK LF +S+V L QLQ+L + C EVI + +
Sbjct: 833 ILTFQNLKSVMIDQCQSLKNLFPASLVRDLVQLQELQVWSCGI--EVIVAKDNGVKTAAK 890
Query: 732 MVFPKLVSLQLSHLPKLTRFGIG-DSVEFPSLCQLQIACCPNLKIFI--CSCTEEMSSEK 788
VFPK+ SL+LSHL +L F G + ++P L +L++ CP + +F +++
Sbjct: 891 FVFPKVTSLRLSHLHQLRSFYPGAHTSQWPLLKELKVHECPEVDLFAFETPTFQQIHHMG 950
Query: 789 NIHTTQTQPLF 799
N+ QPLF
Sbjct: 951 NLDMLIHQPLF 961
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224143316|ref|XP_002336027.1| cc-nbs-lrr resistance protein [Populus trichocarpa] gi|222838884|gb|EEE77235.1| cc-nbs-lrr resistance protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 569 bits (1466), Expect = e-159, Method: Compositional matrix adjust.
Identities = 361/814 (44%), Positives = 496/814 (60%), Gaps = 35/814 (4%)
Query: 7 SEDFLDWLLSNEEASHLFEKIVGHSAKKSDFETIGVEIVAKCGGLPIAIKTIANALKNKS 66
+ +F +L EA + FEK+VG + K + + E+ +C GLPI + T+A ALKN+
Sbjct: 295 NRNFQIQILPVREAWNFFEKMVGVTVKNPSVQLVAAEVAKRCAGLPILLATVARALKNED 354
Query: 67 PRIWKDAVNQLSNSNPRKIQGMDADLSSIELSYEFLKCKEVKSLFQLCGLLKDGSRIAVD 126
WK+A+ QL+ + I S +ELSY+ L+ E+KSLF LCG + + +
Sbjct: 355 LYAWKEALTQLTRFDKDDID--KTAYSCLELSYKALRDDEIKSLFLLCGQILTYDAL-IS 411
Query: 127 DLLRYVMGLRLLTNADTLEAARNRVHTLIDNLKSASLLFDGDSEDHAKMHRIIHAIAVSI 186
DLL+Y +GL L T E ARNR+HTL+D LK++ LL +GD++ KMH ++ + A+S+
Sbjct: 412 DLLKYAIGLDLFKGRSTSEEARNRLHTLVDELKASCLLLEGDNDGSVKMHDVVRSFAISV 471
Query: 187 AAEKLLFNIQNVADLKEELDKID--EAPTAISIPFRGIYELPERLGFLKLKLFLFFTENL 244
A ++ VAD +E D + TAIS+PFR I +LP L L FL + +
Sbjct: 472 ALRD--HHVLIVADEFKEWPTNDVLQQYTAISLPFRKIPDLPAILECPNLNSFLLLSTDP 529
Query: 245 SLQIPDPFFEGMTELRVLDLTGFRFHSLPSSLGCLINLRTLSLENCLVVDVAIIGDLKKL 304
SLQIP+ FF M EL+VLDLTG LPSSL L NL+TL L+ C++ D++I+G+LKKL
Sbjct: 530 SLQIPENFFREMKELKVLDLTGVNLSPLPSSLQFLENLQTLCLDFCVLEDISIVGELKKL 589
Query: 305 EILSLKHSSIEQLPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGNSFTQW 364
++LSL S I LPREIG+LT L LLDLSNC +L+ I PNV+S+LTRLEELYMGNSF +W
Sbjct: 590 KVLSLMGSDIVCLPREIGKLTRLLLLDLSNCERLEVISPNVLSSLTRLEELYMGNSFLKW 649
Query: 365 KVEGQS----NASLGELKQLSRLTTLEVHIPDAQVMPQD--LVFVELERFRICIGDVWSW 418
+ EG S +A L ELK L+ L TL++ I DA MP+D L F +LERFRI IGD W W
Sbjct: 650 EAEGPSSERNSACLSELKLLANLITLDMQITDADHMPKDLFLCFQKLERFRIFIGDGWDW 709
Query: 419 SDGYETSKTLKLQLNNSTYLGYGMKMLLKRTEDLHLDELAGFKNVVHELDDEEGFARLRH 478
S Y TS+TLKL+LN L + LLK TE+LHL EL G K+++++L DEEGF +L+
Sbjct: 710 SVKYATSRTLKLKLNTVIQLEERVNTLLKITEELHLQELNGVKSILNDL-DEEGFCQLKD 768
Query: 479 LHVHNGPEILHILNSDGRVG---TFPLLESLFLHNLINLEKVCDGKVRLNEDDKSFSNLR 535
LHV N P + +I+NS R+G F L+SLFL NL NLEK+C G++ +S NLR
Sbjct: 769 LHVQNCPGVQYIINS-MRMGPRTAFLNLDSLFLENLDNLEKICHGQLMA----ESLGNLR 823
Query: 536 IIKVEGCHRVKHLFPFSLVKNLLQLQKVKVTDCTNLKLIVGKESENSAHKNGSISGVYFR 595
I+KVE CHR+K+LF S+ + +++L+++ + DC ++ +V +ESEN I F
Sbjct: 824 ILKVESCHRLKNLFSVSIARRVVRLEEITIIDCKIMEEVVAEESENDTADGEPIE---FT 880
Query: 596 KLHFLKLQHLPQLTSSGFDLETP-TNTQGSNPGIIAEGDPKDFTSLFNERVVFPSLKKLK 654
+L L LQ LPQ TS + + + I+A + SLFN +++FP L+ L
Sbjct: 881 QLRRLTLQCLPQFTSFHSNRRQKLLASDVRSKEIVAGNELGTSMSLFNTKILFPKLEDLM 940
Query: 655 LSSINVEKIWLNSFSAIESWGKNLTKLTVEKCGRLKFLFSSSMVNGLEQLQQLDISHCKS 714
LSSI VEKIW + + KNL + VE C L +L +SSMV L QL+ L+I +CKS
Sbjct: 941 LSSIKVEKIWHDQHAVQPPCVKNLASIVVESCSNLNYLLTSSMVESLAQLKSLEICNCKS 1000
Query: 715 MNE-VINTRVGRDDNMIEMVFPKLVSLQLSHLPKLTRFGIGDSVEFPSLCQLQIACCPNL 773
M E V+ +G M +M+FPKL L L LPKLTRF + +E SL L + CP L
Sbjct: 1001 MEEIVVPEGIGEGKMMSKMLFPKLHILSLIRLPKLTRFCTSNLLECHSLKVLTLGKCPEL 1060
Query: 774 KIFI----CSCTEEMSSEKNIHTTQTQPLFDEKV 803
K FI + MS N + LFD+KV
Sbjct: 1061 KEFISIPSSADVPAMSKPDNTKSA----LFDDKV 1090
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224083434|ref|XP_002307025.1| cc-nbs-lrr resistance protein [Populus trichocarpa] gi|222856474|gb|EEE94021.1| cc-nbs-lrr resistance protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 553 bits (1424), Expect = e-154, Method: Compositional matrix adjust.
Identities = 352/839 (41%), Positives = 497/839 (59%), Gaps = 54/839 (6%)
Query: 15 LSNEEASHLFEKIVGHSAKKSDFETIGVEIVAKCGGLPIAIKTIANALKNKSPRIWKDAV 74
LS EE LF+K+ G + D +++ +E+ C GLP+AI T+A ALKNK+ WK+A+
Sbjct: 311 LSEEETWELFKKMAGDHVEHPDLQSLAIEVAKMCAGLPVAIVTVARALKNKNLSQWKNAL 370
Query: 75 NQLSNSNPRKIQGMDADL-SSIELSYEFLKCKEVKSLFQLCGLLKDGSRIAVDDLLRYVM 133
+L +PR G+ D+ ++IELSY L+ KE+KS F LC + G + DLL+Y M
Sbjct: 371 RELKRPSPRNFAGVQEDVYAAIELSYNHLESKELKSTFLLCSRM--GYNASTRDLLKYGM 428
Query: 134 GLRLLTNADTLEAARNRVHTLIDNLKSASLLFDGDSEDHAKMHRIIHAIAVSIAAEKLLF 193
GL L + T+E A++RVH+L+ LK++ LL + S+ MH + +A+SIA F
Sbjct: 429 GLGLFSGFVTVEEAQDRVHSLVHKLKASGLLLENHSDWQFSMHDAVRDVAISIA-----F 483
Query: 194 NIQNVADLKEELDKIDEAPTAISIPFRGIY-----ELPERLGFLKLKLFLFFTENLSLQI 248
+V +E++ A + ++ I+ EL + + +LK +E+ SL+I
Sbjct: 484 RDCHVFVGGDEVEPKWSAKNMLK-KYKEIWLSSNIELLREMEYPQLKFLHVRSEDPSLEI 542
Query: 249 PDPFFEGMTELRVLDLTGFRFHSLPSSLGCLINLRTLSLENCLVVDVAIIGDLKKLEILS 308
GM +L+VL LT SLPS L L NLRTL L + ++A IG+LKKLEILS
Sbjct: 543 SSNICRGMHKLKVLVLTNISLVSLPSPLHFLKNLRTLCLHQSSLGEIADIGELKKLEILS 602
Query: 309 LKHSSIEQLPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGNSFTQWKVEG 368
S+I+ LPR+IGQLT L++LDLS+C +L I PN+ SNL+ LEEL MGNSF W EG
Sbjct: 603 FAKSNIKHLPRQIGQLTKLRMLDLSDCFELDVIPPNIFSNLSMLEELCMGNSFHHWATEG 662
Query: 369 QSNASLGELKQLSRLTTLEVHIPDAQVMPQDLVFVELERFRICIGDVWSWSDGYETSKTL 428
+ NASL EL L LT +++H+ D+ VM + ++ LERFRI IGDVW W Y++ +TL
Sbjct: 663 EDNASLVELDHLPHLTNVDIHVLDSHVMSKGMLSKRLERFRIFIGDVWDWDGVYQSLRTL 722
Query: 429 KLQLNNS-TYLGYGMKMLLKRTEDLHLDELAGFKNVVHELDDEEGFARLRHLHVHNGPEI 487
KL+LN S + L +G+ MLLKRT+DL+L EL G NVV ELD EGF +LRHLH+HN +I
Sbjct: 723 KLKLNTSASNLEHGVLMLLKRTQDLYLLELKGVNNVVSELDT-EGFLQLRHLHLHNSSDI 781
Query: 488 LHILNSDGRVGT--FPLLESLFLHNLINLEKVCDGKVRLNEDDKSFSNLRIIKVEGCHRV 545
+I+N+ + FP+LESLFL+NL++LEK+C G + +SF L II+V C ++
Sbjct: 782 QYIINTSSEFPSHVFPVLESLFLYNLVSLEKLCHGILTA----ESFRKLTIIEVGNCVKL 837
Query: 546 KHLFPFSLVKNLLQLQKVKVTDCTNLKLIVGKESENSAHKNGSISGVYFRKLHFLKLQHL 605
KHLFPFS+ + L QLQ + ++ C ++ +V +E + I + F +L L LQ L
Sbjct: 838 KHLFPFSVARGLSQLQTINISFCLTMEEVVAEEGDEFEDSCTEIDVMEFNQLSSLSLQCL 897
Query: 606 PQLTSSGFDLETPTNTQGS-NP-----GI----IAEGDPKDFTSLFNERVVFPSLKKLKL 655
P L + +T Q NP G+ I+E +P++ LF E+++ P LKKL+L
Sbjct: 898 PHLKNFCSREKTSRLCQAQLNPVATSVGLQSKEISEDEPRNPLQLFCEKILIPKLKKLEL 957
Query: 656 SSINVEKIWLNSFSAIESWG-KNLTKLTVEKCGRLKFLFSSSMVNGLEQLQQLDISHCKS 714
SINVEKIW ++ +NL L V+ C LK+LFS SMV L QL+ L + +CKS
Sbjct: 958 VSINVEKIWHGQLHRENTFPVQNLQTLYVDDCHSLKYLFSPSMVKSLVQLKYLTVRNCKS 1017
Query: 715 MNEVINTR-VGRDDNMIEMVFPKLVSLQLSHLPKLTRFGIGDSVEFPSLCQLQIACCPNL 773
M E+I+ V + M EM F KL ++LS LP+LT F G ++ L QL I CP
Sbjct: 1018 MEEIISVEGVEEGEMMSEMCFDKLEDVELSDLPRLTWFCAGSLIKCKVLKQLYICYCPEF 1077
Query: 774 KIFICSCTE-----------EMSSEKNIHTTQTQPLFDEKVE-----VSFAATS--SYI 814
K FI SC + E+ S ++ H QPLFDEKV +SFA S SYI
Sbjct: 1078 KTFI-SCPDSANMTVDIEPGELHSRESDHNA-VQPLFDEKVTSSSILLSFALPSFTSYI 1134
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359488027|ref|XP_002269288.2| PREDICTED: disease resistance protein At4g27190-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 540 bits (1392), Expect = e-151, Method: Compositional matrix adjust.
Identities = 351/850 (41%), Positives = 503/850 (59%), Gaps = 103/850 (12%)
Query: 8 EDFLDWLLSNEEASHLFEKIVGHSAKKSDFETIGVEIVAKCGGLPIAIKTIANALKNKSP 67
+DF L EEA LF+K+ G S ++ D ++I +++ +C GLPIAI T+A ALKNK
Sbjct: 301 KDFPVEHLQEEEALILFKKMAGDSIEEPDLQSIAIDVAKECAGLPIAIVTVAKALKNKGL 360
Query: 68 RIWKDAVNQLSNSNPRKIQGMDADL-SSIELSYEFLKCKEVKSLFQLCGLLKDGSRIAVD 126
IW+DA+ QL S P I+GMDA + S++ELSY+ L+ EVKSLF LCGL+ + +I +D
Sbjct: 361 SIWEDALRQLKRSIPTNIKGMDAMVYSTLELSYKHLEGDEVKSLFLLCGLMSN--KIYID 418
Query: 127 DLLRYVMGLRLLTNADTLEAARNRVHTLIDNLKSASLLFDGDSEDHAKMHRIIHAIAVSI 186
DLL+Y MGLRL +TLE A+NR+ TL+D+LK++ LL D +MH ++ +A++I
Sbjct: 419 DLLKYGMGLRLFQGTNTLEEAKNRIDTLVDSLKASKLLLDTGHNSFVRMHDVVRDVAIAI 478
Query: 187 AAEKLLFNIQNVADLKE----ELDKIDEAPTA--ISIPFRGIYELPERLGFLKLKLFLFF 240
++ + V L+E E K+DE T +S+ + I ELP L +L+LFLF+
Sbjct: 479 VSK-----VHRVFSLREDELVEWPKMDELQTCTKMSLAYNDICELPIELVCPELELFLFY 533
Query: 241 -TENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPSSLGCLINLRTLSLENCLVVDVAIIG 299
T + L+IP+ FFE M +L+VLDL+ F SLPSSL CL NLRTLSL C + D++II
Sbjct: 534 HTIDYHLKIPETFFEEMKKLKVLDLSNMHFTSLPSSLRCLTNLRTLSLNWCKLGDISIIV 593
Query: 300 DLKKLEILSLKHSSIEQLPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGN 359
+LKKLE S S+IE+LPREI QLT L+L DL +CSKL+EI PNVIS+L++LE L M N
Sbjct: 594 ELKKLEFFSFMGSNIEKLPREIAQLTHLRLFDLRDCSKLREIPPNVISSLSKLENLCMEN 653
Query: 360 SFTQWKVEGQSNASLGELKQLSRLTTLEVHIPDAQVMPQDLVFVELERFRICIGDVWSWS 419
SFT W+VEG+SNAS+ E K L LTTL++ IPDA+++ D++F +L R+RI IGDVWSW
Sbjct: 654 SFTLWEVEGKSNASIAEFKYLPYLTTLDIQIPDAELLLTDVLFEKLIRYRIFIGDVWSWD 713
Query: 420 DGYETSKTLKL-QLNNSTYLGYGMKMLLKRTEDLHLDELAGFKNVVHELDDEEGFARLRH 478
T+KTLKL +L+ S L G+ +LLK +DLHL EL+G NV +L D EGF +L+
Sbjct: 714 KNCPTTKTLKLNKLDTSLRLADGISLLLKGAKDLHLRELSGAANVFPKL-DREGFLQLKC 772
Query: 479 LHVHNGPEILHILNSDGRV---GTFPLLESLFLHNLINLEKVCDGKVRLNEDDKSFSNLR 535
LHV PE+ HI+NS + FP+LESLFL+ LINL++VC G++ + SFS LR
Sbjct: 773 LHVERSPEMQHIMNSMDPILSPCAFPVLESLFLNQLINLQEVCHGQLLVG----SFSYLR 828
Query: 536 IIKVEGCHRVKHLFPFSLVKNLLQLQKVKVTDCTNLKLIVGKESENSAHKNGSISGVYFR 595
I+KVE C +K LF S+ + L +L+K+++T C N+ +V + E+ + ++ + F
Sbjct: 829 IVKVEYCDGLKFLFSMSMARGLSRLEKIEITRCKNMYKMVAQGKEDG---DDAVDAILFA 885
Query: 596 KLHFLKLQHLPQLTSSGFDLETPTNTQGSNP-------GIIAEGDPKDFTSLFNE----- 643
+L +L LQHLP+L + + +T +T +P GI +EG+ + TS+FN+
Sbjct: 886 ELRYLTLQHLPKLRNFCLEGKTMPSTTKRSPTTNVRFNGICSEGELDNQTSVFNQLEGWH 945
Query: 644 ----------------------RVVFPSL------------------------KKLKLSS 657
+V+ PSL +K L S
Sbjct: 946 GQLLLSFCNLQSLKIKNCASLLKVLPPSLLQNLQNLEVLIVENYDIPVAVLFNEKAALPS 1005
Query: 658 I---------NVEKIWLNSFSAIESWGKNLTKLTVEKCGRLKFLFSSSMVNGLEQLQQLD 708
+ NV+KIW N +S+ K L + V CG+L +F SSM+ L+ LQ L
Sbjct: 1006 LELLNISGLDNVKKIWHNQLPQ-DSFTK-LKDVKVASCGQLLNIFPSSMLKRLQSLQFLK 1063
Query: 709 ISHCKSMNEVINTRVGRDDNMIEMV-FPKLVSLQLSHLPKLTRFGIGDS---VEFPSLCQ 764
C S+ EV + N+ E V +L L L LPK+ + + + F +L
Sbjct: 1064 AVDCSSLEEVFDM---EGINVKEAVAVTQLSKLILQFLPKVKQIWNKEPRGILTFQNLKS 1120
Query: 765 LQIACCPNLK 774
+ I C +LK
Sbjct: 1121 VMIDQCQSLK 1130
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255542484|ref|XP_002512305.1| phosphoprotein phosphatase, putative [Ricinus communis] gi|223548266|gb|EEF49757.1| phosphoprotein phosphatase, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 535 bits (1378), Expect = e-149, Method: Compositional matrix adjust.
Identities = 346/827 (41%), Positives = 504/827 (60%), Gaps = 37/827 (4%)
Query: 10 FLDWLLSNEEASHLFEKIVGHSAKKSDFETIGVEIVAKCGGLPIAIKTIANALKNKSPRI 69
FL +L +EEA LFEK G K I +I KC GLP+ I +A ALKNK
Sbjct: 256 FLLRVLQDEEAWQLFEKKAGE-VKDPTLHPIATQIARKCAGLPVLIVAVATALKNKELCE 314
Query: 70 WKDAVNQLSNSNPRKIQGMDADLSSIELSYEFLKCKEVKSLFQLCGLLKDGSRIAVDDLL 129
W+DA+ L N +G +A ++++LSY FL +E KSLF LCG LK I V DLL
Sbjct: 315 WRDALEDL---NKFDKEGYEASYTALKLSYNFLGAEE-KSLFVLCGQLK-AHYIVVSDLL 369
Query: 130 RYVMGLRLLTNADTLEAARNRVHTLIDNLKSASLLFDGDSEDHAKMHRIIHAIAVSIAA- 188
+Y +GL L T++AARNR+ ++++LK + LL +GD +D +MH ++H A +A+
Sbjct: 370 KYSLGLGLFNQRTTVKAARNRLLKVVNDLKRSCLLLEGDDDDEVRMHDVVHNFATLVASR 429
Query: 189 EKLLFNIQNVADLKEELDK-IDEAPTAISIPFRGIYELPERLGFLKLKLFLFFTENLSLQ 247
+ +F + + L+E +K I E TAIS+P I +LPE L+ FL + ++ SL+
Sbjct: 430 DHHVFAVACDSGLEEWPEKDILEQFTAISLPDCKIPKLPEVFECPDLQSFLLYNKDSSLK 489
Query: 248 IPDPFFEGMTELRVLDLTGFRFHSLPSSLGCLINLRTLSLENCLVVDVAIIGDLKKLEIL 307
IPD FF M +L+++DL+ +P SL CL NL+TL L+ C + D+A IG+LKKL++L
Sbjct: 490 IPDNFFSRMKKLKLMDLSNVHLSPMPLSLQCLENLQTLCLDRCTLEDIAAIGELKKLQVL 549
Query: 308 SLKHSSIEQLPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGNSFTQWKVE 367
S S++ QLPRE+G+LT L+LLDLS C KL+ I V+S LT+LEELYMGNSF QW+ E
Sbjct: 550 SFIGSTMVQLPREVGKLTRLQLLDLSRCQKLEVIPKGVLSCLTKLEELYMGNSFVQWESE 609
Query: 368 ----GQSNASLGELKQLSRLTTLEVHIPDAQVMPQDLVFVELERFRICIGDVWSWSDGYE 423
++NASL ELK L L TLE+HI +A+++P+D+ +L+ +++ IG+ WSW YE
Sbjct: 610 EHDGDRNNASLDELKLLPNLVTLELHIINAEILPRDVFSEKLDLYKVFIGEEWSWFGKYE 669
Query: 424 TSKTLKLQLNNSTYLGYGMKMLLKRTEDLHLDELAGFKNVVHELDDEEGFARLRHLHVHN 483
S+TLKL+LN+S + +K+LL TEDL+LDEL G +NV++ELD +GF +L+HLH+ N
Sbjct: 670 ASRTLKLKLNSSIEIE-KVKVLLMTTEDLYLDELEGVRNVLYELDG-QGFPQLKHLHIQN 727
Query: 484 GPEILHI---LNSDGRVGTFPLLESLFLHNLINLEKVCDGKVRLNEDDKSFSNLRIIKVE 540
EI +I L+ FP LESL + NL NL ++C G++ SFS LR +KVE
Sbjct: 728 SSEIQYIVDCLSMGNHYIAFPRLESLLVDNLNNLGQICYGQLM----SGSFSKLRKLKVE 783
Query: 541 GCHRVKHLFPFSLVKNLLQLQKVKVTDCTNLKLIVGKESENSAHKNGSISGVYFRKLHFL 600
C+ +K+LF FS+ + L+QL+++ V+ C ++ IV +E E+ + ++ I + R L
Sbjct: 784 HCNALKNLFYFSMFRGLVQLEEIDVSSCNIMEEIVVEEIEDDSGRDEIIKPIRLRT---L 840
Query: 601 KLQHLPQLTSSGFDLETPTNTQGSNPG---IIAEGDPKDFTSLFNERVVFPSLKKLKLSS 657
L++LP+ TS F + G + G II+E + LF +++ F +L LKLSS
Sbjct: 841 TLEYLPRFTS--FCSQRMQKLAGLDAGCAQIISETP----SVLFGQKIEFSNLLNLKLSS 894
Query: 658 I-NVEKIWLNSFSAIESWGKNLTKLTVEKCGRLKFLFSSSMVNGLEQLQQLDISHCKSMN 716
I N+EKIW N S +NLT L VE CG+L +LF+SSMV L QL+ L+IS C M
Sbjct: 895 INNMEKIWRNQVKEPPSSVQNLTSLIVEGCGKLSYLFTSSMVENLSQLEYLEISDCSFME 954
Query: 717 EVINTRVGRDDNMIEMVFPKLVSLQLSHLPKLTRFGIGDSVEFPSLCQLQIACCPNLKIF 776
E+I G + ++ FP L +L+L LP L RF G+ +E PSL L+I CP L F
Sbjct: 955 EIIVAE-GLTKHNSKLHFPILHTLKLKSLPNLIRFCFGNLIECPSLNALRIENCPRLLKF 1013
Query: 777 I-CSCTEEMSSEKNIHTTQTQPLFDEKVEVSFAATSSYIFILDLHIL 822
I S + M + + T + LFDEKV +++ +L ++
Sbjct: 1014 ISSSASTNMEANRGGRETNST-LFDEKVSFPILEKLEIVYMNNLRMI 1059
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147865073|emb|CAN83232.1| hypothetical protein VITISV_021876 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 507 bits (1306), Expect = e-141, Method: Compositional matrix adjust.
Identities = 329/797 (41%), Positives = 474/797 (59%), Gaps = 62/797 (7%)
Query: 8 EDFLDWLLSNEEASHLFEKIVGHSAKKSDFETIGVEIVAKCGGLPIAIKTIANALKNKSP 67
+DF L +E LF+ G S + + + I V++ +C GLPIAI T+A ALKNK+
Sbjct: 298 KDFRVQHLQEDETWILFKNTAGDSIENPELQPIAVDVAKECAGLPIAIVTVAKALKNKNV 357
Query: 68 RIWKDAVNQLSNSNPRKIQGMDADL-SSIELSYEFLKCKEVKSLFQLCGLLKDGSRIAVD 126
IWKDA+ QL++ I GM+ + SS++LSYE L+ EVKSLF LCGL + I +
Sbjct: 358 SIWKDALQQLNSQTSTNITGMETKVYSSLKLSYEHLEGDEVKSLFLLCGLFSN--YIYIR 415
Query: 127 DLLRYVMGLRLLTNADTLEAARNRVHTLIDNLKSASLLFDGDSEDHAKMHRIIHAIAVSI 186
DLL+Y MGLRL +TLE A+NR+ TL+DNLKS++LL + +MH ++ ++A+ I
Sbjct: 416 DLLKYGMGLRLFQGTNTLEEAKNRIDTLVDNLKSSNLLLETGHNAVVRMHDVVRSVALDI 475
Query: 187 AA-EKLLFNIQNVADLKEELDKIDEAPTAISIPFR--GIYELPERLGFLKLKLFLF-FTE 242
++ + +F +Q E+ +IDE I + I+ELPE L KLKLF+
Sbjct: 476 SSKDHHVFTLQQTTGRVEKWPRIDELQKVIWVNQDECDIHELPEGLVCPKLKLFICCLKT 535
Query: 243 NLSLQIPDPFFEGMTELRVLDLTGFRFHSLPSSLGCLINLRTLSLENCLVVDVAIIGDLK 302
N +++IP+ FFEGM +L+VLD T SLPSSL CL NL+TL L C + D+ II +LK
Sbjct: 536 NSAVKIPNTFFEGMKQLQVLDFTQMHLPSLPSSLQCLANLQTLLLYGCKLGDIGIITELK 595
Query: 303 KLEILSLKHSSIEQLPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGNSFT 362
KLEILSL S IEQLPREI QLT L+LLDLS+ S +K I VIS+L++LE+L M NSFT
Sbjct: 596 KLEILSLIDSDIEQLPREIAQLTHLRLLDLSDSSTIKVIPSGVISSLSQLEDLCMENSFT 655
Query: 363 QWKVEGQSNASLGELKQLSRLTTLEVHIPDAQVMPQDLVFVELERFRICIGDVWSWSDGY 422
QW+ EG+SNA L ELK LS LT+L++ IPDA+++P+D+VF L R+RI +GDVW W + Y
Sbjct: 656 QWEGEGKSNACLAELKHLSHLTSLDIQIPDAKLLPKDVVFENLVRYRIFVGDVWIWEENY 715
Query: 423 ETSKTLKL-QLNNSTYLGYGMKMLLKRTEDLHLDELAGFKNVVHELDDEEGFARLRHLHV 481
+T++TLKL + + S +L G+ LLK TEDLHL EL G NV+ +LD EGF +L+HL+V
Sbjct: 716 KTNRTLKLKKFDTSLHLVDGISKLLKITEDLHLRELCGGTNVLSKLDG-EGFFKLKHLNV 774
Query: 482 HNGPEILHILNS---DGRVGTFPLLESLFLHNLINLEKVCDGKVRLNEDDK-SFSNLRII 537
+ PEI +I+NS G FP++E+L L+ LINL++VC G+ + K SF LR +
Sbjct: 775 ESSPEIQYIVNSLDLTSPHGAFPVMETLSLNQLINLQEVCHGQFPVESSRKQSFGCLRKV 834
Query: 538 KVEGCHRVKHLFPFSLVKNLLQLQKVKVTDCTNLKLIVGKESENSAHKNGSISGVYFRKL 597
+VE C +K LF S+ + L QL+++KVT C ++ +V +E + ++ F +L
Sbjct: 835 EVEDCDGLKFLFSLSVARGLSQLEEIKVTRCKSMVEMVSQERKEIREDADNVP--LFPEL 892
Query: 598 HFLKLQHLPQLTSSGFDLETPTNTQGSNPGIIAEGDPKDFTSLFNERVVFPSLKKLKLSS 657
L L+ LP+L++ F+ NP + PK ++ +V PS L
Sbjct: 893 RHLTLEDLPKLSNFCFE---------ENPVL-----PKPAST-----IVGPSTPPLNQPE 933
Query: 658 INVEKIWLNSFSAIESWGKNLTKLTVEKCGRLKFLFSSSMVNGLEQLQQLDISHCKSMNE 717
I ++ L S+G NL L ++ C L LF S+ L+ L++L + +C +
Sbjct: 934 IRDGQLLL-------SFGGNLRSLKLKNCMSLLKLFPPSL---LQNLEELIVENCGQLEH 983
Query: 718 VIN-TRVGRDDNMIEMVFPKLVSLQLSHLPKLTRF-GIGDS---------------VEFP 760
V + + DD +E++ PKL L+L LPKL G S + FP
Sbjct: 984 VFDLEELNVDDGHVELL-PKLKELRLIGLPKLRHICNCGSSRNHFPSSMASAPVGNIIFP 1042
Query: 761 SLCQLQIACCPNLKIFI 777
L + + PNL F+
Sbjct: 1043 KLSDITLESLPNLTSFV 1059
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359488095|ref|XP_002270726.2| PREDICTED: probable disease resistance protein At4g27220-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 503 bits (1294), Expect = e-139, Method: Compositional matrix adjust.
Identities = 330/822 (40%), Positives = 477/822 (58%), Gaps = 65/822 (7%)
Query: 8 EDFLDWLLSNEEASHLFEKIVGHSAKKSDFETIGVEIVAKCGGLPIAIKTIANALKNKSP 67
+DF L +E LF+ G S K + + I V++ +C GLPIAI T+A ALKNK+
Sbjct: 298 KDFRVQHLQEDETWILFKNTAGDSIKNPELQPIAVDVAKECAGLPIAIVTVAKALKNKNV 357
Query: 68 RIWKDAVNQLSNSNPRKIQGMDADL-SSIELSYEFLKCKEVKSLFQLCGLLKDGSRIAVD 126
IWKDA+ QL + I GM+ + SS++LSYE L+ EVKSL LCGL S I +
Sbjct: 358 SIWKDALQQLKSQTSTNITGMETKVYSSLKLSYEHLEGDEVKSLCLLCGLF--SSDIHIG 415
Query: 127 DLLRYVMGLRLLTNADTLEAARNRVHTLIDNLKSASLLFDGDSEDHAKMHRIIHAIAVSI 186
DLL+Y +GLRL +TLE A+NR+ TL+DNLKS++ L + D + +MH ++ + A I
Sbjct: 416 DLLKYGVGLRLFQGTNTLEEAKNRIDTLVDNLKSSNFLLETDHNAYVRMHDLVRSTARKI 475
Query: 187 AAE-KLLFNIQNVADLKEELDKIDE-APTAISIPFRGIYELPERLGFLKLKLF-LFFTEN 243
A+E + +F Q EE +IDE T + + I+ELPE L KL+ F F +
Sbjct: 476 ASEQRHVFTHQKTTVRVEEWSRIDELQVTWVKLHDCDIHELPEGLVCPKLEFFECFLKTH 535
Query: 244 LSLQIPDPFFEGMTELRVLDLTGFRFHSLPSSLGCLINLRTLSLENCLVVDVAIIGDLKK 303
+++IP+ FFEGM +L+VLD + + SLP S+ CL NLRTL L+ C + D+ II +LKK
Sbjct: 536 SAVKIPNTFFEGMKQLKVLDFSRMQLPSLPLSIQCLANLRTLCLDGCKLGDIVIIAELKK 595
Query: 304 LEILSLKHSSIEQLPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGNSFTQ 363
LEILSL S +EQLPREI QLT L+LLDLS+ S +K I VIS+L RLE+L M NSFTQ
Sbjct: 596 LEILSLMSSDMEQLPREIAQLTHLRLLDLSDSSTIKVIPSGVISSLFRLEDLCMENSFTQ 655
Query: 364 WKVEGQSNASLGELKQLSRLTTLEVHIPDAQVMPQDLVFVELERFRICIGDVWSWSDGYE 423
W+ EG+SNA L ELK LS LT L++ IPDA+++P+D+VF L R+RI +GDVWSW + +E
Sbjct: 656 WEGEGKSNACLAELKHLSHLTFLDIQIPDAKLLPKDIVFENLVRYRILVGDVWSWEEIFE 715
Query: 424 TSKTLKL-QLNNSTYLGYGMKMLLKRTEDLHLDELAGFKNVVHELDDEEGFARLRHLHVH 482
+ TLKL + + S +L G+ LLKRTEDLHL EL G NV+ +L + EGF +L+HL+V
Sbjct: 716 ANSTLKLNKFDTSLHLVDGISKLLKRTEDLHLRELCGGTNVLSKL-NREGFLKLKHLNVE 774
Query: 483 NGPEILHILNS---DGRVGTFPLLESLFLHNLINLEKVCDGKVRLNEDDKSFSNLRIIKV 539
+ PEI +I+NS G FP++E+L L+ LINL++VC G+ S LR ++V
Sbjct: 775 SSPEIQYIVNSMDLTSSHGAFPVMETLSLNQLINLQEVCHGQFPAG----SLGCLRKVEV 830
Query: 540 EGCHRVKHLFPFSLVKNLLQLQKVKVTDCTNLKLIVGKESENSAHKNGSISGVYFRKLHF 599
E C +K LF S+ + L +L++ KVT C ++ +V + + K +++ F +L +
Sbjct: 831 EDCDGLKFLFSLSVARGLSRLEETKVTRCKSMVEMVSQGRKEI--KEDAVNVPLFPELRY 888
Query: 600 LKLQHLPQLTSSGFDLETPTNTQGSNPGIIAEGDPKDFTSLFNERVVFPSLKKLKLSSIN 659
L L+ LP+L++ F+ E P ++ ++ +V PS L I
Sbjct: 889 LTLEDLPKLSNFCFE-ENPVLSKPAS------------------TIVGPSTPPLNQPEIR 929
Query: 660 VEKIWLNSFSAIESWGKNLTKLTVEKCGRLKFLFSSSMVNGLEQLQQLDISHCKSMNEVI 719
++ L S G NL L ++ C L LF S+ L+ L++L + +C + V
Sbjct: 930 DGQLLL-------SLGGNLRSLKLKNCMSLLKLFPPSL---LQNLEELIVENCGQLEHVF 979
Query: 720 N-TRVGRDDNMIEMVFPKLVSLQLSHLPKLTRF-GIGDS---------------VEFPSL 762
+ + DD +E++ PKL L+LS LPKL G S + FP L
Sbjct: 980 DLEELNVDDGHVELL-PKLKELRLSGLPKLRHICNCGSSRNHFPSSMASAPVGNIIFPKL 1038
Query: 763 CQLQIACCPNLKIFICSCTEEMSSEKNIHTTQTQP-LFDEKV 803
+++ PNL F+ + + P LFDE+V
Sbjct: 1039 SDIKLESLPNLTSFVSPGYHSLQRLHHADLDTPFPVLFDERV 1080
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 840 | ||||||
| TAIR|locus:2131689 | 919 | AT4G27220 [Arabidopsis thalian | 0.695 | 0.635 | 0.273 | 3.5e-46 | |
| TAIR|locus:2136447 | 985 | AT4G27190 [Arabidopsis thalian | 0.691 | 0.589 | 0.261 | 4.6e-39 | |
| TAIR|locus:2005517 | 909 | RPS2 "RESISTANT TO P. SYRINGAE | 0.435 | 0.402 | 0.279 | 2.9e-28 | |
| TAIR|locus:2031366 | 898 | AT1G63350 "AT1G63350" [Arabido | 0.396 | 0.370 | 0.284 | 5.8e-24 | |
| TAIR|locus:2171579 | 843 | AT5G47250 [Arabidopsis thalian | 0.378 | 0.377 | 0.291 | 6.7e-23 | |
| TAIR|locus:2132741 | 892 | AT4G10780 [Arabidopsis thalian | 0.4 | 0.376 | 0.273 | 2.1e-20 | |
| TAIR|locus:2008440 | 899 | AT1G61180 [Arabidopsis thalian | 0.4 | 0.373 | 0.261 | 2.9e-20 | |
| TAIR|locus:2166320 | 888 | AT5G63020 [Arabidopsis thalian | 0.466 | 0.441 | 0.259 | 4.1e-20 | |
| TAIR|locus:2171589 | 948 | AT5G47260 [Arabidopsis thalian | 0.45 | 0.398 | 0.253 | 4.2e-19 | |
| TAIR|locus:2031356 | 884 | AT1G63360 [Arabidopsis thalian | 0.435 | 0.414 | 0.261 | 7.8e-18 |
| TAIR|locus:2131689 AT4G27220 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 490 (177.5 bits), Expect = 3.5e-46, Sum P(2) = 3.5e-46
Identities = 167/611 (27%), Positives = 271/611 (44%)
Query: 15 LSNEEASHLFEKIVGHSAKKSDFETIGVEIVAKCGGLPIAIKTIANALKNKSP-RIWKDA 73
L +EA LF VG A + + I ++ +C GLP+AI TI L+ K +WK
Sbjct: 272 LQEKEAWELFCHNVGEVANSDNVKPIAKDVSHECCGLPLAIITIGRTLRGKPQVEVWKHT 331
Query: 74 VNQLSNSNPRKIQGMDADLSSIELSYEFLKCKEVKSLFQLCGLLKDGSRIAVDDLLRYVM 133
+N L S P I + +++LSY+FL+ +KS F C L + I V +L+ Y +
Sbjct: 332 LNLLKRSAP-SIDTEEKIFGTLKLSYDFLQ-DNMKSCFLFCALFPEDYSIKVSELIMYWV 389
Query: 134 GLRLLTNADTLEAARNRVHTLIDNLKSASLLFDGDSEDHAKMHRIIHAIAV-SIAAEKLL 192
LL E N TL++ LK + LL DGDS D KMH ++ A+ ++++
Sbjct: 390 AEGLLDGQHHYEDMMNEGVTLVERLKDSCLLEDGDSCDTVKMHDVVRDFAIWFMSSQGEG 449
Query: 193 FNIQNVAD---LKEELDKIDEAPTAISIPFRGIYELPERLGXXXXXXXXXXTENLSL-QI 248
F+ +A ++ DK + +S+ + LP + N + ++
Sbjct: 450 FHSLVMAGRGLIEFPQDKFVSSVQRVSLMANKLERLPNNVIEGVETLVLLLQGNSHVKEV 509
Query: 249 PDPFFEGMTELRVLDLTGFRFHSLPSSLGCLINLRTLSLENCLVV-DVAIIGDLKKLEIL 307
P+ F + LR+LDL+G R +LP S L +LR+L L NC + ++ + L KL+ L
Sbjct: 510 PNGFLQAFPNLRILDLSGVRIRTLPDSFSNLHSLRSLVLRNCKKLRNLPSLESLVKLQFL 569
Query: 308 SLKHSSIEQLPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGNSFTQWKVE 367
L S+I +LPR + L+ L+ + +SN +L+ I I L+ LE L M S W ++
Sbjct: 570 DLHESAIRELPRGLEALSSLRYICVSNTYQLQSIPAGTILQLSSLEVLDMAGSAYSWGIK 629
Query: 368 GQSN---ASLGELKQLSRLTTLEVHIPDAQVMPQ--DLVFVELERFRICIGDVWSWSDGY 422
G+ A+L E+ L L L + + D D + L +F+ + S S
Sbjct: 630 GEEREGQATLDEVTCLPHLQFLAIKLLDVLSFSYEFDSLTKRLTKFQFLFSPIRSVSPPG 689
Query: 423 ETSKTLKLQLNNSTYLGYGMKMLLKRTEDLHLDELAGFKNVVHEL--DDEEGFARLRHLH 480
L + N + G LL+ L L+ G + L + F ++ L
Sbjct: 690 TGEGCLAISDVNVSNASIGW--LLQHVTSLDLNYCEGLNGMFENLVTKSKSSFVAMKALS 747
Query: 481 VHNGPEILHILNSDGRVGTFPLLESLFLHNLINLEKVCDGKVRLNEDDKSFSNLRIIKVE 540
+H P + + ++ FP LE L L N +NLE + + L L++++V
Sbjct: 748 IHYFPSLSLASGCESQLDLFPNLEELSLDN-VNLESIGELNGFLG---MRLQKLKLLQVS 803
Query: 541 GCHRVKHLFPFSXXXXXX-XXXXXXXTDCTNLKLIVGKESENSAHKNGSISGVYFRKLHF 599
GC ++K LF C L+ + S S+ KL
Sbjct: 804 GCRQLKRLFSDQILAGTLPNLQEIKVVSCLRLEELFNFSSVPVDFCAESL----LPKLTV 859
Query: 600 LKLQHLPQLTS 610
+KL++LPQL S
Sbjct: 860 IKLKYLPQLRS 870
|
|
| TAIR|locus:2136447 AT4G27190 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 449 (163.1 bits), Expect = 4.6e-39, P = 4.6e-39
Identities = 164/626 (26%), Positives = 295/626 (47%)
Query: 11 LDWLLSNEEASHLFEKIVGHSAKKSDFETIGVEIVAKCGGLPIAIKTIANALKNK-SPRI 69
+D LL E+A LF K G + I + +CGGLP+AI T+ A++ K + ++
Sbjct: 299 VDCLLE-EDAWELFCKNAGDVVRSDHVRKIAKAVSQECGGLPLAIITVGTAMRGKKNVKL 357
Query: 70 WKDAVNQLSNSNPRKIQGMDADL-SSIELSYEFLKCKEVKSLFQLCGLLKDGSRIAVDDL 128
W +++LS S P I+ ++ + ++LSY+FL+ K K F LC L + I V ++
Sbjct: 358 WNHVLSKLSKSVPW-IKSIEEKIFQPLKLSYDFLEDK-AKFCFLLCALFPEDYSIEVTEV 415
Query: 129 LRYVMGLRLLTNADTLEAARNRVHTLIDNLKSASLLFDGDSEDHAKMHRIIHAIAVSIAA 188
+RY M + + E + N T +++LK LL DGD D KMH ++ A+ I +
Sbjct: 416 VRYWMAEGFMEELGSQEDSMNEGITTVESLKDYCLLEDGDRRDTVKMHDVVRDFAIWIMS 475
Query: 189 EK------LLFNIQNVADLKEELDKIDEAPTAISIPFRGIYELPERLGXXXXXXXXXXTE 242
L+ + + D+++ DK+ + +S+ + LP+ + +
Sbjct: 476 SSQDDSHSLVMSGTGLQDIRQ--DKLAPSLRRVSLMNNKLESLPDLVEEFCVKTSVLLLQ 533
Query: 243 -NLSL-QIPDPFFEGMTELRVLDLTGFRFHSLPS-SLGCLINLRTLSLENCL-VVDVAII 298
N L ++P F + LR+L+L+G R S PS SL L +L +L L +C +V + +
Sbjct: 534 GNFLLKEVPIGFLQAFPTLRILNLSGTRIKSFPSCSLLRLFSLHSLFLRDCFKLVKLPSL 593
Query: 299 GDLKKLEILSLKHSSIEQLPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMG 358
L KLE+L L + I + PR + +L + LDLS L+ I V+S L+ LE L M
Sbjct: 594 ETLAKLELLDLCGTHILEFPRGLEELKRFRHLDLSRTLHLESIPARVVSRLSSLETLDMT 653
Query: 359 NSFTQWKVEGQSN---ASLGELKQLSRLTTLEVHIPDAQVM--PQDLVFVELERFRICIG 413
+S +W V+G++ A++ E+ L RL L + + + + ++ L++F++ +G
Sbjct: 654 SSHYRWSVQGETQKGQATVEEIGCLQRLQVLSIRLHSSPFLLNKRNTWIKRLKKFQLVVG 713
Query: 414 DVWSWSDGYETSKTLKLQLNNSTYLGYGMKMLLKRTEDLHLDELAGFKNVVHEL-DDEEG 472
+ ++ + L + N + + G LL T L L+ G + ++ +L D +G
Sbjct: 714 SRYILRTRHD-KRRLTISHLNVSQVSIGW--LLAYTTSLALNHCQGIEAMMKKLVSDNKG 770
Query: 473 FARLRHLHVHNGPEILHILNSDGRVGTFPLLESLFLHNLI-NLEKVCDGKVRLNEDDK-- 529
F L+ L + N I++ + V T +S + +L+ NLE++ +V L +
Sbjct: 771 FKNLKSLTIEN--VIINTNSWVEMVSTNTSKQSSDILDLLPNLEELHLRRVDLETFSELQ 828
Query: 530 -----SFSNLRIIKVEGCHRVKHLFPFSXXXXXXXXXXXXXTDCTNLKLIVGKESENSAH 584
L+II++ C +++ L + C +L+ + H
Sbjct: 829 THLGLKLETLKIIEITMCRKLRTLLDKRNFLTIPNLEEIEISYCDSLQ---------NLH 879
Query: 585 KNGSISGVYFRKLHFLKLQHLPQLTS 610
+ + L LKL++LP L S
Sbjct: 880 EALLYHQPFVPNLRVLKLRNLPNLVS 905
|
|
| TAIR|locus:2005517 RPS2 "RESISTANT TO P. SYRINGAE 2" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 279 (103.3 bits), Expect = 2.9e-28, Sum P(2) = 2.9e-28
Identities = 108/387 (27%), Positives = 187/387 (48%)
Query: 33 KKSDFETIGVEIVAKCGGLPIAIKTIANALKNK-SPRIWKDAVNQLSNSNPRKIQGMDAD 91
+ S + IV+KCGGLP+A+ T+ A+ ++ + W A L+ P +++GM+
Sbjct: 330 ESSSIRRLAEIIVSKCGGLPLALITLGGAMAHRETEEEWIHASEVLTRF-PAEMKGMNYV 388
Query: 92 LSSIELSYEFLKCKEVKSLFQLCGLLKDGSRIAVDDLLRYVMGLRLLTNADTLEAARNRV 151
+ ++ SY+ L+ ++S F C L + I ++ L+ Y +G LT++ + +
Sbjct: 389 FALLKFSYDNLESDLLRSCFLYCALFPEEHSIEIEQLVEYWVGEGFLTSSHGVNTIY-KG 447
Query: 152 HTLIDNLKSASLLFDGDSEDHAKMHRIIHAIAVSIAAEKLLFNIQNVADLK---EELDKI 208
+ LI +LK+A LL GD + KMH ++ + A+ +A+E+ + + + E K
Sbjct: 448 YFLIGDLKAACLLETGDEKTQVKMHNVVRSFALWMASEQGTYKELILVEPSMGHTEAPKA 507
Query: 209 DEAPTA--ISIPFRGIYELPERLGXXXXXXXXXXTENLSLQ-IPDPFFEGMTELRVLDLT 265
+ A IS+ I LPE+L +N SL+ IP FF M LRVLDL+
Sbjct: 508 ENWRQALVISLLDNRIQTLPEKL-ICPKLTTLMLQQNSSLKKIPTGFFMHMPVLRVLDLS 566
Query: 266 GFRFHSLPSSLGCLINLRTLSLENCLV-VDVAIIGDLKKLEILSLKHSS-IEQLPRE-IG 322
+P S+ L+ L LS+ + V +G+L+KL+ L L+ + ++ +PR+ I
Sbjct: 567 FTSITEIPLSIKYLVELYHLSMSGTKISVLPQELGNLRKLKHLDLQRTQFLQTIPRDAIC 626
Query: 323 QLTCLKLLDL--SNCS-KLKEIRPNVISNLTRLEELYMGNSFTQWKVEGQSNASLGELKQ 379
L+ L++L+L S +L+ + L + Y+ N T G + SL LK
Sbjct: 627 WLSKLEVLNLYYSYAGWELQSFGEDEAEELGFADLEYLENLTTL----GITVLSLETLKT 682
Query: 380 LSRLTTLEVHIPDAQVMP-QDLVFVEL 405
L L HI V +L++ L
Sbjct: 683 LFEFGALHKHIQHLHVEECNELLYFNL 709
|
|
| TAIR|locus:2031366 AT1G63350 "AT1G63350" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 272 (100.8 bits), Expect = 5.8e-24, Sum P(2) = 5.8e-24
Identities = 102/359 (28%), Positives = 181/359 (50%)
Query: 15 LSNEEASHLFEKIVGHSAKKSDFETIGVE-IVAK-CGGLPIAIKTIANALKNK-SPRIWK 71
L++ +A LF+K VG SD E + +VAK C GLP+A+ ++ + K + + W+
Sbjct: 309 LADNDAYDLFQKKVGQITLGSDPEIRELSRVVAKKCCGLPLALNVVSETMSCKRTVQEWR 368
Query: 72 DAVNQLSNSNPRKIQGMDAD-LSSIELSYEFLKCKEVKSLFQLCGLLKDGSRIAVDDLLR 130
A+ L NS K GMD L ++ SY+ LK ++VK C L + ++I ++L+
Sbjct: 369 HAIYVL-NSYAAKFSGMDDKILPLLKYSYDSLKGEDVKMCLLYCALFPEDAKIRKENLIE 427
Query: 131 YVMGLRLLTNADTLEAARNRVHTLIDNLKSASLLFDGDSEDHAK---MHRIIHAIAVSIA 187
Y + ++ ++ ++ A N+ + +I +L ASLL + D A +H ++ +A+ IA
Sbjct: 428 YWICEEIIDGSEGIDKAENQGYEIIGSLVRASLLMEEVELDGANIVCLHDVVREMALWIA 487
Query: 188 AE----KLLFNIQNVADLKEELDKIDE--APTAISIPFRGIYELPERLGXXXXXXXXXXT 241
++ F ++ L+E L K++ +S+ I L RL +
Sbjct: 488 SDLGKQNEAFIVRASVGLREIL-KVENWNVVRRMSLMKNNIAHLDGRLDCMELTTLLLQS 546
Query: 242 ENLSLQIPDPFFEGMTELRVLDLTG-FRFHSLPSSLGCLINLRTLSLENCLVVDVAI-IG 299
+L +I FF M +L VLDL+G + LP+ + L++L+ L+L + + + +
Sbjct: 547 THLE-KISSEFFNSMPKLAVLDLSGNYYLSELPNGISELVSLQYLNLSSTGIRHLPKGLQ 605
Query: 300 DLKKLEILSLKHSSIEQLPREIGQLTCL---KLLDLSNCSKLKEIRPNVISNLTRLEEL 355
+LKKL L L+ +S QL +G ++CL K+L LS S ++ + + L LE L
Sbjct: 606 ELKKLIHLYLERTS--QLGSMVG-ISCLHNLKVLKLSGSSYAWDL--DTVKELEALEHL 659
|
|
| TAIR|locus:2171579 AT5G47250 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 270 (100.1 bits), Expect = 6.7e-23, Sum P(2) = 6.7e-23
Identities = 98/336 (29%), Positives = 164/336 (48%)
Query: 7 SEDFLDWLLSNEEASHLFEKIVGHSAKKSDFETIGVEIVAKCGGLPIAIKTIANALKNKS 66
+ED LS +A LF+ V H ++ I +IVAKC GLP+A++ I + +KS
Sbjct: 305 NEDIEVQCLSENDAWDLFDMKV-HCDGLNEISDIAKKIVAKCCGLPLALEVIRKTMASKS 363
Query: 67 PRI-WKDAVNQLSNSNPRKIQGMDADLSSI-ELSYEFLKCKEVKSLFQLCGLLKDGSRIA 124
I W+ A++ L S +++G + + + +LSY++LK K K F C L I
Sbjct: 364 TVIQWRRALDTLE-SYRSEMKGTEKGIFQVLKLSYDYLKTKNAKC-FLYCALFPKAYYIK 421
Query: 125 VDDLLRYVMGLRLLTNADTLEAARNRVHTLIDNLKSASLLFDGDSEDHAKMHRIIHAIAV 184
D+L+ Y +G + D E A++R + +IDNL A LL + + + + MH +I +A+
Sbjct: 422 QDELVEYWIGEGFIDEKDGRERAKDRGYEIIDNLVGAGLLLESNKKVY--MHDMIRDMAL 479
Query: 185 SIAAEKL---LFNIQNVADLKEELDKID-EAPTAISIPFRGIYELPE--RLGXXXXXXXX 238
I +E + ++ A L + D D T +S+ I +P+
Sbjct: 480 WIVSEFRDGERYVVKTDAGLSQLPDVTDWTTVTKMSLFNNEIKNIPDDPEFPDQTNLVTL 539
Query: 239 XXTENLSLQIPDPFFEGMTELRVLDLT-GFRFHSLPSSLGCLINLRTLSLENCLVVDVAI 297
N + I FF M+ L VLDL+ F+ LP + L++LR L+L + +
Sbjct: 540 FLQNNRLVDIVGKFFLVMSTLVVLDLSWNFQITELPKGISALVSLRLLNLSGTSIKHLPE 599
Query: 298 -IGDLKKLEILSLKHSSIEQLPREIGQLTCLKLLDL 332
+G L KL L+L+ +S L R +G ++ L+ L +
Sbjct: 600 GLGVLSKLIHLNLESTS--NL-RSVGLISELQKLQV 632
|
|
| TAIR|locus:2132741 AT4G10780 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 221 (82.9 bits), Expect = 2.1e-20, Sum P(2) = 2.1e-20
Identities = 97/355 (27%), Positives = 162/355 (45%)
Query: 15 LSNEEASHLFEKIVGHSAKKS--DFETIGVEIVAKCGGLPIAIKTIANALKNK-SPRIWK 71
LS +A LF++ VG + S D + ++ KC GLP+A+ I + K + + W
Sbjct: 310 LSTNDAWELFQEKVGQISLGSHPDILELAKKVAGKCRGLPLALNVIGETMAGKRAVQEWH 369
Query: 72 DAVNQLSNSNPRKIQGMDADLSSI-ELSYEFLKCKEVKSLFQLCGLLKDGSRIAVDDLLR 130
AV+ L+ S + GMD + I + SY+ L K V+S FQ C L + I L+
Sbjct: 370 HAVDVLT-SYAAEFSGMDDHILLILKYSYDNLNDKHVRSCFQYCALYPEDYSIKKYRLID 428
Query: 131 YVMGLRLLTNADTLEAARNRVHTLIDNLKSASLLFD-GDSEDHAKMHRIIHAIAV----S 185
Y + + E A N+ + ++ L A LL + G ++ KMH ++ +A+
Sbjct: 429 YWICEGFIDGNIGKERAVNQGYEILGTLVRACLLSEEGKNKLEVKMHDVVREMALWTLSD 488
Query: 186 IAAEKLLFNIQNVADLKEELDKIDE--APTAISIPFRGIYELPERLGXXXXXXXXXXTEN 243
+ K +Q + L++ + K+++ A +S+ GI E+ EN
Sbjct: 489 LGKNKERCIVQAGSGLRK-VPKVEDWGAVRRLSLMNNGIEEISGS-PECPELTTLFLQEN 546
Query: 244 LSL-QIPDPFFEGMTELRVLDLT-GFRFHSLPSSLGCLINLRTLSLENCLVVDV-AIIGD 300
SL I FF M +L VLDL+ + LP + L+ LR L L + + + A + D
Sbjct: 547 KSLVHISGEFFRHMRKLVVLDLSENHQLDGLPEQISELVALRYLDLSHTNIEGLPACLQD 606
Query: 301 LKKLEILSLKHSSIEQLPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEEL 355
LK L L+L+ I +L+ L+ L L N + + ++ + L LE L
Sbjct: 607 LKTLIHLNLECMRRLGSIAGISKLSSLRTLGLRNSNIMLDVMS--VKELHLLEHL 659
|
|
| TAIR|locus:2008440 AT1G61180 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 238 (88.8 bits), Expect = 2.9e-20, Sum P(2) = 2.9e-20
Identities = 92/352 (26%), Positives = 162/352 (46%)
Query: 15 LSNEEASHLFEKIVGHSAKKSD--FETIGVEIVAKCGGLPIAIKTIANALKNKSP-RIWK 71
L E+A LF+ VG + SD + E+ KC GLP+A+ I + +K+ + W+
Sbjct: 309 LEPEDAWELFKNKVGDNTLSSDPVIVELAREVAQKCRGLPLALNVIGETMSSKTMVQEWE 368
Query: 72 DAVNQLSNSNPRKIQGMDADLSSIELSYEFLKCKEVKSLFQLCGLLKDGSRIAVDDLLRY 131
A++ + S + L ++ SY+ L + +KS F C L + I + L+ Y
Sbjct: 369 HAIHVFNTSAAEFSDMQNKILPILKYSYDSLGDEHIKSCFLYCALFPEDGEIYNEKLIDY 428
Query: 132 VMGLRLLTNADTLEAARNRVHTLIDNLKSASLLFDGDSEDHAKMHRIIHAIAVSIAAE-- 189
+ + ++ ARN+ + ++ L A+LL + + MH ++ +A+ IA++
Sbjct: 429 WICEGFIGEDQVIKRARNKGYAMLGTLTRANLLTKVGTY-YCVMHDVVREMALWIASDFG 487
Query: 190 --KLLFNIQNVADLKEELDKIDE--APTAISIPFRGIYELPERLGXXXXXXXXXXTENLS 245
K F +Q L E+ K+ + A +S+ I E+ + L
Sbjct: 488 KQKENFVVQAGVGL-HEIPKVKDWGAVRKMSLMDNDIEEITCESKCSELTTLFLQSNKLK 546
Query: 246 LQIPDPFFEGMTELRVLDLTGFR-FHSLPSSLGCLINLRTLSLENCLVVDVAI-IGDLKK 303
+P F M +L VLDL+ R F+ LP + L++L+ L L N + + I + +LKK
Sbjct: 547 -NLPGAFIRYMQKLVVLDLSYNRDFNKLPEQISGLVSLQFLDLSNTSIEHMPIGLKELKK 605
Query: 304 LEILSLKHSSIEQLPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEEL 355
L L L ++ I +L L+LL L SK+ +V+ L +L+ L
Sbjct: 606 LTFLDLTYTDRLCSISGISRLLSLRLLRLLG-SKVHG-DASVLKELQQLQNL 655
|
|
| TAIR|locus:2166320 AT5G63020 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 249 (92.7 bits), Expect = 4.1e-20, Sum P(2) = 4.1e-20
Identities = 108/416 (25%), Positives = 192/416 (46%)
Query: 15 LSNEEASHLFEKIVGHSAKKS--DFETIGVEIVAKCGGLPIAIKTIANALKNK-SPRIWK 71
L+ ++A LF K VG S + T+ + KC GLP+A+ I + K + + W+
Sbjct: 311 LAPDDAWDLFTKKVGEITLGSHPEIPTVARTVAKKCRGLPLALNVIGETMAYKRTVQEWR 370
Query: 72 DAVNQLSNSNPRKIQGMDADLSSI-ELSYEFLKCKEVKSLFQLCGLLKDGSRIAVDDLLR 130
A++ L++S + GM+ ++ I + SY+ LK +++K FQ C L + I +DL+
Sbjct: 371 SAIDVLTSS-AAEFSGMEDEILPILKYSYDNLKSEQLKLCFQYCALFPEDHNIEKNDLVD 429
Query: 131 YVMGLRLLTNADTLEAARNRVHTLIDNLKSASLLFDGDSEDHAKMHRIIHAIAVSIAAE- 189
Y +G + A N+ + +I L + LL + ++++ KMH ++ +A+ IA++
Sbjct: 430 YWIGEGFIDR--NKGKAENQGYEIIGILVRSCLLME-ENQETVKMHDVVREMALWIASDF 486
Query: 190 -KLLFNIQNVADLKEE-LDKIDEAPTA--ISIPFRGIYELPERLGXXXXXXXXXXTENLS 245
K N A L+ + +I++ A +S+ F I + + +N
Sbjct: 487 GKQKENFIVQAGLQSRNIPEIEKWKVARRVSLMFNNIESIRDA-PESPQLITLLLRKNFL 545
Query: 246 LQIPDPFFEGMTELRVLDLTGFR-FHSLPSSLGCLINLRTLSLENCLV-VDVAIIGDLKK 303
I FF M L VLDL+ R LP+ + ++L+ LSL + + A + +L+K
Sbjct: 546 GHISSSFFRLMPMLVVLDLSMNRDLRHLPNEISECVSLQYLSLSRTRIRIWPAGLVELRK 605
Query: 304 LEILSLKHSSIEQLPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELY-MGNSFT 362
L L+L+++ + + I LT LK+L L S E P V++ L LE L + +
Sbjct: 606 LLYLNLEYTRMVESICGISGLTSLKVLRLF-VSGFPE-DPCVLNELQLLENLQTLTITLG 663
Query: 363 QWKVEGQ--SNASLGELKQLSRLTTLEVHIPDAQVMPQDLVFVELERFRICIGDVW 416
+ Q SN L + R+ L P + V+ L+ D+W
Sbjct: 664 LASILEQFLSNQRLASCTRALRIENLN---PQSSVISFVATMDSLQELHFADSDIW 716
|
|
| TAIR|locus:2171589 AT5G47260 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 227 (85.0 bits), Expect = 4.2e-19, Sum P(2) = 4.2e-19
Identities = 101/399 (25%), Positives = 178/399 (44%)
Query: 15 LSNEEASHLFEKIVGHSAKKS--DFETIGVEIVAKCGGLPIAIKTIANALKNK-SPRIWK 71
LS EEA LF++ VG + +S D + + + C GLP+A+ I A+ K + R W+
Sbjct: 301 LSPEEAWDLFQETVGENTLRSHQDIPKLARVVASTCRGLPLALNLIGEAMSGKRTVREWR 360
Query: 72 DAVNQLSNSNPRKIQGMDADLSSIELSYEFLKCKEVKSLFQLCGLLKDGSRIAVDDLLRY 131
++ L++S D L ++ Y+ + + ++ F C L + I +DL+ Y
Sbjct: 361 YTIHVLASSTAEFPDMEDGTLPILKSIYDNMSDEIIRLCFLYCALFPENLDIGKEDLVNY 420
Query: 132 VMGLRLLTNADTLEAARNRVHTLIDNLKSASLLFDGDSEDHAKMHRIIHAIAVSIAAEK- 190
+ +L D E A + + +I +L LL + + + KMH ++ +A+ IA+E
Sbjct: 421 WICEGILAKEDR-EEAEIQGYEIICDLVRMRLLMESGNGNCVKMHGMVREMALWIASEHF 479
Query: 191 LLFNIQNVADLKEELD-KIDEAPTAISIPFRGIYELPERLGXXXXXXXXXXTENLSLQ-I 248
++ + + + D ++ + S + I + P+ N L+ I
Sbjct: 480 VVVGGERIHQMLNVNDWRMIRRMSVTSTQIQNISDSPQ----CSELTTLVFRRNRHLKWI 535
Query: 249 PDPFFEGMTELRVLDLTGFR-FHSLPSSLGCLINLRTLSLENCLVVDVAI-IGDLKKLEI 306
FF+ MT L VLDL+ R LP + L+ LR L+L + + + + +LK L
Sbjct: 536 SGAFFQWMTGLVVLDLSFNRELAELPEEVSSLVLLRFLNLSWTCIKGLPLGLKELKSLIH 595
Query: 307 LSLKHSSIEQLPREIGQLTCLKLLDL--SNCSKLKEIRP-NVISNLTRLEELYMGNSFTQ 363
L L ++S Q I L L++L L S LK + ++ +L L G+S Q
Sbjct: 596 LDLDYTSNLQEVDVIASLLNLQVLRLFHSVSMDLKLMEDIQLLKSLKELSLTVRGSSVLQ 655
Query: 364 WKVEGQSNASLGELKQLSRLTTLEVHIPDAQVMPQDLVF 402
+ Q AS + RL E I D ++ + +F
Sbjct: 656 RLLSIQRLAS-----SIRRLHLTETTIVDGGILSLNAIF 689
|
|
| TAIR|locus:2031356 AT1G63360 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 226 (84.6 bits), Expect = 7.8e-18, Sum P(2) = 7.8e-18
Identities = 104/397 (26%), Positives = 181/397 (45%)
Query: 15 LSNEEASHLFEKIVGHSAKKSD--FETIGVEIVAKCGGLPIAIKTIANALKNKSP-RIWK 71
L A LF+K VG + SD + + KC GLP+A+ I + K + W+
Sbjct: 309 LEENVAFDLFQKKVGQTTLGSDPGIPQLARIVAKKCCGLPLALNVIGETMSCKRTIQEWR 368
Query: 72 DAVNQLSNSNPRKIQGM-DADLSSIELSYEFLKCKEVKSLFQLCGLLKDGSRIAVDDLLR 130
A++ L NS + GM D L ++ SY+ LK ++VKS C L + ++I +DL+
Sbjct: 369 HAIHVL-NSYAAEFIGMEDKVLPLLKYSYDNLKGEQVKSSLLYCALYPEDAKILKEDLIE 427
Query: 131 YVMGLRLLTNADTLEAARNRVHTLIDNLKSASLLF---DGDSEDHAKMHRIIHAIAVSIA 187
+ + ++ ++ +E A ++ + +I L ASLL DGD MH ++ +A+ IA
Sbjct: 428 HWICEEIIDGSEGIEKAEDKGYEIIGCLVRASLLMEWDDGDGRRAVCMHDVVREMALWIA 487
Query: 188 AE----KLLFNIQNVADLKEELDKIDE--APTAISIPFR------GIYELPERLGXXXXX 235
+E K F ++ ++E + KI +S+ G YE E
Sbjct: 488 SELGIQKEAFIVRAGVGVRE-IPKIKNWNVVRRMSLMENKIHHLVGSYECMELTTLLLGK 546
Query: 236 XXXXXTENLSLQIPDPFFEGMTELRVLDLTGFR-FHSLPSSLGCLINLRTLSLENCLVVD 294
+ I FF M +L VLDL+ + LP + L++L+ L+L +
Sbjct: 547 REYGSIRSQLKTISSEFFNCMPKLAVLDLSHNKSLFELPEEISNLVSLKYLNLLYTEISH 606
Query: 295 VAI-IGDLKKLEILSLKHSSIEQLPREIGQLTCLKLLDLSNCSKLK-EIRPNVISNLTRL 352
+ I +LKK+ L+L+++ + I L LK+L L S+L ++ N + L L
Sbjct: 607 LPKGIQELKKIIHLNLEYTRKLESITGISSLHNLKVLKLFR-SRLPWDL--NTVKELETL 663
Query: 353 EELYMGNSFTQWKVEGQSNASLGELKQLSRLTTLEVH 389
E L + + ++ ++ L + LS LE++
Sbjct: 664 EHLEILTT----TIDPRAKQFLSSHRLLSHSRLLEIY 696
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 840 | |||
| pfam00931 | 285 | pfam00931, NB-ARC, NB-ARC domain | 3e-14 | |
| PLN03210 | 1153 | PLN03210, PLN03210, Resistant to P | 4e-06 | |
| PLN00113 | 968 | PLN00113, PLN00113, leucine-rich repeat receptor-l | 6e-05 | |
| PLN00113 | 968 | PLN00113, PLN00113, leucine-rich repeat receptor-l | 1e-04 | |
| pfam13855 | 60 | pfam13855, LRR_8, Leucine rich repeat | 0.001 |
| >gnl|CDD|216202 pfam00931, NB-ARC, NB-ARC domain | Back alignment and domain information |
|---|
Score = 73.9 bits (182), Expect = 3e-14
Identities = 36/129 (27%), Positives = 57/129 (44%), Gaps = 5/129 (3%)
Query: 14 LLSNEEASHLFEKIVGH--SAKKSDFETIGVEIVAKCGGLPIAIKTIANALKNKS-PRIW 70
L EE+ LF V + E + EIV KC GLP+A+K + L KS + W
Sbjct: 155 SLEPEESWELFSNKVFEKELPPCPELEEVAKEIVEKCKGLPLALKVLGGLLAFKSTVQEW 214
Query: 71 KDAVNQLSNSNPRKIQGMDADLSSIELSYEFLKCKEVKSLFQLCGLLKDGSRIAVDDLLR 130
+ + QL+N G++ LS + LSY+ L +K F L + I + L++
Sbjct: 215 EHVLEQLNNE-LAGRDGLNEVLSILSLSYDNLP-MHLKRCFLYLALFPEDYNIRKEQLIK 272
Query: 131 YVMGLRLLT 139
+ +
Sbjct: 273 LWIAEGFVI 281
|
Length = 285 |
| >gnl|CDD|215633 PLN03210, PLN03210, Resistant to P | Back alignment and domain information |
|---|
Score = 50.6 bits (121), Expect = 4e-06
Identities = 95/383 (24%), Positives = 161/383 (42%), Gaps = 91/383 (23%)
Query: 36 DFETIGVEIVAKCGGLPIAIKTIANALKNKSPRIWKDAVNQLSNSNPRKIQGMDADLSSI 95
F + E+ + G LP+ + + + L+ + W D + +L N KI+ ++
Sbjct: 373 GFMELASEVALRAGNLPLGLNVLGSYLRGRDKEDWMDMLPRLRNGLDGKIE------KTL 426
Query: 96 ELSYEFLKCKEVKSLFQLCGLLKDGSRIAVDDLLRYVMGLRLLTNADTLEAARNRVHTLI 155
+SY+ L K+ K++F+ L +G + V+D+ +LL L+ V+ +
Sbjct: 427 RVSYDGLNNKKDKAIFRHIACLFNGEK--VNDI-------KLLLANSDLD-----VNIGL 472
Query: 156 DNLKSASLLFDGDSEDHAKMHRIIHAIAVSI--------AAEKLLFNIQNVADLKE---- 203
NL SL+ ED +MH ++ + I + L + +++ D+ E
Sbjct: 473 KNLVDKSLIHV--REDIVEMHSLLQEMGKEIVRAQSNEPGEREFLVDAKDICDVLEDNTG 530
Query: 204 ---------ELDKIDEAPTAISIPFRGI--------------------YELPERLGFLKL 234
++D+IDE + F+G+ + LPE +L
Sbjct: 531 TKKVLGITLDIDEIDELHIHEN-AFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPP 589
Query: 235 KLFL--------------FFTENL-SLQIP----DPFFEG---MTELRVLDLTGFRFHSL 272
KL L F ENL LQ+ + ++G +T LR +DL G +
Sbjct: 590 KLRLLRWDKYPLRCMPSNFRPENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKE 649
Query: 273 PSSLGCLINLRTLSLENC--LVVDVAIIGDLKKLEILSLKH-SSIEQLPREIGQLTCLKL 329
L NL TL L +C LV + I L KLE L + ++E LP I L L
Sbjct: 650 IPDLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYR 708
Query: 330 LDLSNCSKLKEIRPNVISNLTRL 352
L+LS CS+LK P++ +N++ L
Sbjct: 709 LNLSGCSRLK-SFPDISTNISWL 730
|
syringae 6; Provisional. Length = 1153 |
| >gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional | Back alignment and domain information |
|---|
Score = 46.4 bits (110), Expect = 6e-05
Identities = 52/169 (30%), Positives = 73/169 (43%), Gaps = 35/169 (20%)
Query: 243 NLSLQIPDPFFEGMTELRVLDLTGFRFHSLPSSLGCLINLRTLSLENCL----------- 291
LS IPD F + LR L+L+ F + G + NL TL L N +
Sbjct: 104 QLSGPIPDDIFTTSSSLRYLNLSNNNF-TGSIPRGSIPNLETLDLSNNMLSGEIPNDIGS 162
Query: 292 -----VVDV----------AIIGDLKKLEILSLKHSS-IEQLPREIGQLTCLKLLDLSNC 335
V+D+ + +L LE L+L + + Q+PRE+GQ+ LK + L
Sbjct: 163 FSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYN 222
Query: 336 SKLKEIRPNVISNLTRLEEL-YMGNSFTQWKVEGQSNASLGELKQLSRL 383
+ EI P I LT L L + N+ T G +SLG LK L L
Sbjct: 223 NLSGEI-PYEIGGLTSLNHLDLVYNNLT-----GPIPSSLGNLKNLQYL 265
|
Length = 968 |
| >gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional | Back alignment and domain information |
|---|
Score = 45.2 bits (107), Expect = 1e-04
Identities = 49/155 (31%), Positives = 80/155 (51%), Gaps = 13/155 (8%)
Query: 259 LRVLDLTG-FRFHSLPSSLGCLINLRTLSL-ENCLVVDV-AIIGDLKKLEILSLKHSSIE 315
L+VLDL G +P+SL L +L L+L N LV + +G +K L+ + L ++++
Sbjct: 166 LKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLS 225
Query: 316 -QLPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGNSFTQWKVEGQSNASL 374
++P EIG LT L LDL + I P+ + NL L+ L++ Q K+ G S+
Sbjct: 226 GEIPYEIGGLTSLNHLDLVYNNLTGPI-PSSLGNLKNLQYLFL----YQNKLSGPIPPSI 280
Query: 375 GELKQLSRL----TTLEVHIPDAQVMPQDLVFVEL 405
L++L L +L IP+ + Q+L + L
Sbjct: 281 FSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHL 315
|
Length = 968 |
| >gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat | Back alignment and domain information |
|---|
Score = 37.5 bits (88), Expect = 0.001
Identities = 18/58 (31%), Positives = 25/58 (43%), Gaps = 2/58 (3%)
Query: 303 KLEILSLKHSSIEQLPREI-GQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGN 359
L+ L L ++ + +P L LK+LDLS L I P S L L L +
Sbjct: 1 NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGN-NLTSISPEAFSGLPSLRSLDLSG 57
|
Length = 60 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 840 | |||
| KOG4658 | 889 | consensus Apoptotic ATPase [Signal transduction me | 100.0 | |
| PLN03210 | 1153 | Resistant to P. syringae 6; Provisional | 100.0 | |
| PLN00113 | 968 | leucine-rich repeat receptor-like protein kinase; | 100.0 | |
| PLN00113 | 968 | leucine-rich repeat receptor-like protein kinase; | 100.0 | |
| PLN03210 | 1153 | Resistant to P. syringae 6; Provisional | 99.92 | |
| KOG4194 | 873 | consensus Membrane glycoprotein LIG-1 [Signal tran | 99.9 | |
| KOG0472 | 565 | consensus Leucine-rich repeat protein [Function un | 99.89 | |
| KOG4194 | 873 | consensus Membrane glycoprotein LIG-1 [Signal tran | 99.88 | |
| KOG0472 | 565 | consensus Leucine-rich repeat protein [Function un | 99.87 | |
| KOG0618 | 1081 | consensus Serine/threonine phosphatase 2C containi | 99.87 | |
| KOG0444 | 1255 | consensus Cytoskeletal regulator Flightless-I (con | 99.86 | |
| KOG0444 | 1255 | consensus Cytoskeletal regulator Flightless-I (con | 99.85 | |
| KOG0618 | 1081 | consensus Serine/threonine phosphatase 2C containi | 99.85 | |
| PF00931 | 287 | NB-ARC: NB-ARC domain; InterPro: IPR002182 This is | 99.81 | |
| KOG0617 | 264 | consensus Ras suppressor protein (contains leucine | 99.59 | |
| KOG0617 | 264 | consensus Ras suppressor protein (contains leucine | 99.59 | |
| KOG4237 | 498 | consensus Extracellular matrix protein slit, conta | 99.59 | |
| PRK15387 | 788 | E3 ubiquitin-protein ligase SspH2; Provisional | 99.55 | |
| PRK15387 | 788 | E3 ubiquitin-protein ligase SspH2; Provisional | 99.52 | |
| PRK15370 | 754 | E3 ubiquitin-protein ligase SlrP; Provisional | 99.48 | |
| PRK15370 | 754 | E3 ubiquitin-protein ligase SlrP; Provisional | 99.44 | |
| KOG4658 | 889 | consensus Apoptotic ATPase [Signal transduction me | 99.36 | |
| KOG4341 | 483 | consensus F-box protein containing LRR [General fu | 99.06 | |
| KOG4341 | 483 | consensus F-box protein containing LRR [General fu | 99.01 | |
| KOG0532 | 722 | consensus Leucine-rich repeat (LRR) protein, conta | 99.0 | |
| KOG4237 | 498 | consensus Extracellular matrix protein slit, conta | 98.98 | |
| cd00116 | 319 | LRR_RI Leucine-rich repeats (LRRs), ribonuclease i | 98.97 | |
| KOG0532 | 722 | consensus Leucine-rich repeat (LRR) protein, conta | 98.95 | |
| PF14580 | 175 | LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ | 98.94 | |
| PF14580 | 175 | LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ | 98.94 | |
| cd00116 | 319 | LRR_RI Leucine-rich repeats (LRRs), ribonuclease i | 98.94 | |
| KOG1259 | 490 | consensus Nischarin, modulator of integrin alpha5 | 98.92 | |
| COG4886 | 394 | Leucine-rich repeat (LRR) protein [Function unknow | 98.71 | |
| KOG1259 | 490 | consensus Nischarin, modulator of integrin alpha5 | 98.71 | |
| COG4886 | 394 | Leucine-rich repeat (LRR) protein [Function unknow | 98.71 | |
| KOG3207 | 505 | consensus Beta-tubulin folding cofactor E [Posttra | 98.63 | |
| PLN03150 | 623 | hypothetical protein; Provisional | 98.49 | |
| KOG3207 | 505 | consensus Beta-tubulin folding cofactor E [Posttra | 98.45 | |
| PLN03150 | 623 | hypothetical protein; Provisional | 98.4 | |
| PF13855 | 61 | LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF | 98.39 | |
| PRK15386 | 426 | type III secretion protein GogB; Provisional | 98.35 | |
| PF13855 | 61 | LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF | 98.31 | |
| PRK15386 | 426 | type III secretion protein GogB; Provisional | 98.24 | |
| KOG0531 | 414 | consensus Protein phosphatase 1, regulatory subuni | 98.08 | |
| KOG3665 | 699 | consensus ZYG-1-like serine/threonine protein kina | 98.08 | |
| KOG0531 | 414 | consensus Protein phosphatase 1, regulatory subuni | 98.07 | |
| KOG2120 | 419 | consensus SCF ubiquitin ligase, Skp2 component [Po | 98.07 | |
| KOG1859 | 1096 | consensus Leucine-rich repeat proteins [General fu | 98.05 | |
| PF12799 | 44 | LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_ | 98.01 | |
| PF12799 | 44 | LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_ | 97.93 | |
| KOG2120 | 419 | consensus SCF ubiquitin ligase, Skp2 component [Po | 97.86 | |
| KOG1947 | 482 | consensus Leucine rich repeat proteins, some prote | 97.72 | |
| KOG3665 | 699 | consensus ZYG-1-like serine/threonine protein kina | 97.68 | |
| KOG1909 | 382 | consensus Ran GTPase-activating protein [RNA proce | 97.66 | |
| KOG1859 | 1096 | consensus Leucine-rich repeat proteins [General fu | 97.64 | |
| KOG4579 | 177 | consensus Leucine-rich repeat (LRR) protein associ | 97.61 | |
| KOG2982 | 418 | consensus Uncharacterized conserved protein [Funct | 97.54 | |
| KOG1644 | 233 | consensus U2-associated snRNP A' protein [RNA proc | 97.49 | |
| KOG1644 | 233 | consensus U2-associated snRNP A' protein [RNA proc | 97.39 | |
| KOG1947 | 482 | consensus Leucine rich repeat proteins, some prote | 97.35 | |
| KOG4579 | 177 | consensus Leucine-rich repeat (LRR) protein associ | 97.18 | |
| KOG2982 | 418 | consensus Uncharacterized conserved protein [Funct | 97.15 | |
| KOG1909 | 382 | consensus Ran GTPase-activating protein [RNA proce | 97.13 | |
| COG5238 | 388 | RNA1 Ran GTPase-activating protein (RanGAP) involv | 96.96 | |
| KOG2739 | 260 | consensus Leucine-rich acidic nuclear protein [Cel | 96.23 | |
| KOG2123 | 388 | consensus Uncharacterized conserved protein [Funct | 95.95 | |
| KOG2739 | 260 | consensus Leucine-rich acidic nuclear protein [Cel | 95.85 | |
| PF00560 | 22 | LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le | 95.83 | |
| KOG3864 | 221 | consensus Uncharacterized conserved protein [Funct | 95.8 | |
| KOG2123 | 388 | consensus Uncharacterized conserved protein [Funct | 95.49 | |
| KOG3864 | 221 | consensus Uncharacterized conserved protein [Funct | 95.05 | |
| PF00560 | 22 | LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le | 95.04 | |
| COG5238 | 388 | RNA1 Ran GTPase-activating protein (RanGAP) involv | 94.81 | |
| PF13504 | 17 | LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO | 94.22 | |
| PF13306 | 129 | LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_ | 93.89 | |
| PF13306 | 129 | LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_ | 93.66 | |
| PF13504 | 17 | LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO | 93.06 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 91.08 | |
| KOG0473 | 326 | consensus Leucine-rich repeat protein [Function un | 90.66 | |
| smart00370 | 26 | LRR Leucine-rich repeats, outliers. | 89.94 | |
| smart00369 | 26 | LRR_TYP Leucine-rich repeats, typical (most popula | 89.94 | |
| KOG0473 | 326 | consensus Leucine-rich repeat protein [Function un | 85.86 | |
| smart00370 | 26 | LRR Leucine-rich repeats, outliers. | 85.75 | |
| smart00369 | 26 | LRR_TYP Leucine-rich repeats, typical (most popula | 85.75 |
| >KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-60 Score=546.73 Aligned_cols=357 Identities=29% Similarity=0.436 Sum_probs=282.7
Q ss_pred CCCCCceEEccCCCHHHHHHHHHHHhCCC--CCCCchhhHHHHHHHHhCCCchhHHHHHHHhcCC-CHHHHHHHHHHhhc
Q 003193 3 SYEYSEDFLDWLLSNEEASHLFEKIVGHS--AKKSDFETIGVEIVAKCGGLPIAIKTIANALKNK-SPRIWKDAVNQLSN 79 (840)
Q Consensus 3 ~~~~~~~~~l~~L~~~~s~~Lf~~~a~~~--~~~~~~~~i~~~i~~~c~GlPLai~~~g~~L~~~-~~~~W~~~l~~l~~ 79 (840)
+||+..++++++|+++|||+||++.||+. ..++.++++|++||+||+|+|||++++|+.|+.| +.++|+++.+.+.+
T Consensus 305 ~m~~~~~~~v~~L~~~eaW~LF~~~v~~~~~~~~~~i~~lak~v~~kC~GLPLAl~viG~~ma~K~t~~eW~~~~~~l~s 384 (889)
T KOG4658|consen 305 AMGVDYPIEVECLTPEEAWDLFQKKVGPNTLGSHPDIEELAKEVAEKCGGLPLALNVLGGLLACKKTVQEWRRALNVLKS 384 (889)
T ss_pred cccCCccccccccCccccHHHHHHhhccccccccccHHHHHHHHHHHhCChHHHHHHHHHHhcCCCcHHHHHHHHccccc
Confidence 48999999999999999999999999944 4556699999999999999999999999999977 88999999999988
Q ss_pred CCCCCccccccc-ccceeecccccCchhhhhHHHhccCCCCCCccCHHHHHHHHhhcccccccchHHHHHHHHHHHHHHH
Q 003193 80 SNPRKIQGMDAD-LSSIELSYEFLKCKEVKSLFQLCGLLKDGSRIAVDDLLRYVMGLRLLTNADTLEAARNRVHTLIDNL 158 (840)
Q Consensus 80 ~~~~~~~~~~~~-~~~l~lSY~~L~~~~lk~cfl~~~~fp~~~~i~~~~li~~wia~gfi~~~~~~~~~~~~~~~~~~~L 158 (840)
....++.++++. +++|++|||+||++ +|.||+|||+|||||+|++++|+.+||||||+++....+.+++.|++|+.+|
T Consensus 385 ~~~~~~~~~~~~i~~iLklSyd~L~~~-lK~CFLycalFPED~~I~~e~Li~yWiaEGfi~~~~~~~~~~d~G~~~i~~L 463 (889)
T KOG4658|consen 385 SLAADFSGMEESILPILKLSYDNLPEE-LKSCFLYCALFPEDYEIKKEKLIEYWIAEGFIDPLDGGETAEDVGYDYIEEL 463 (889)
T ss_pred cccCCCCchhhhhHHhhhccHhhhhHH-HHHHHHhhccCCcccccchHHHHHHHHhccCcCccccccchhcchHHHHHHH
Confidence 866566666666 89999999999965 9999999999999999999999999999999988666778899999999999
Q ss_pred hhccccccCC---CCCceEeehhHHHHHHHHHh-----hceEeEEecCccchhhhh-hccCCCcEEEeccCCcccCCccc
Q 003193 159 KSASLLFDGD---SEDHAKMHRIIHAIAVSIAA-----EKLLFNIQNVADLKEELD-KIDEAPTAISIPFRGIYELPERL 229 (840)
Q Consensus 159 ~~~~l~~~~~---~~~~~~mhdli~~l~~~i~~-----~e~~~~~~~~~~~~~~~~-~~~~~l~~L~l~~~~~~~l~~~~ 229 (840)
+.+++++..+ +..+|+|||+|||||.++|+ ++..+ +..+......|+ ..+..+|++++.++.+..++...
T Consensus 464 V~~~Ll~~~~~~~~~~~~kmHDvvRe~al~ias~~~~~~e~~i-v~~~~~~~~~~~~~~~~~~rr~s~~~~~~~~~~~~~ 542 (889)
T KOG4658|consen 464 VRASLLIEERDEGRKETVKMHDVVREMALWIASDFGKQEENQI-VSDGVGLSEIPQVKSWNSVRRMSLMNNKIEHIAGSS 542 (889)
T ss_pred HHHHHHhhcccccceeEEEeeHHHHHHHHHHhccccccccceE-EECCcCccccccccchhheeEEEEeccchhhccCCC
Confidence 9999998875 45789999999999999999 55522 444334444555 66789999999999999999888
Q ss_pred CCCcceeEeeccCcc-ccCCCchhhcCCCCCcEEEcCCCC-CCCCChhhcCCCCCCEEEccCCccCCcccccCCCCCCEE
Q 003193 230 GFLKLKLFLFFTENL-SLQIPDPFFEGMTELRVLDLTGFR-FHSLPSSLGCLINLRTLSLENCLVVDVAIIGDLKKLEIL 307 (840)
Q Consensus 230 ~~~~L~~L~l~~~~~-~~~~~~~~~~~l~~Lr~L~l~~~~-~~~lp~~l~~l~~L~~L~L~~~~~~~~~~i~~L~~L~~L 307 (840)
.+++|++|.+.+|.. ...++..+|..++.||+||+++|. +..+|++|++|.|||||+++++.+
T Consensus 543 ~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I--------------- 607 (889)
T KOG4658|consen 543 ENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGI--------------- 607 (889)
T ss_pred CCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCc---------------
Confidence 899999999999874 557888889999999999999764 568888888888777777776654
Q ss_pred eecCCCCcccChhhcCCCCCCEEEccCCCCCCccCcccccCCCCCcEEEccCCcccceecCCCCCCcccccCCCCCCeEE
Q 003193 308 SLKHSSIEQLPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGNSFTQWKVEGQSNASLGELKQLSRLTTLE 387 (840)
Q Consensus 308 ~l~~~~l~~lp~~i~~L~~L~~L~L~~~~~l~~~p~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~l~~L~~L~ 387 (840)
+.+|.++++|+.|.+|++..+..+..+| +.+..|.+||+|.+..... ..+...+.++.++.+|+.+.
T Consensus 608 -------~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~-~i~~~L~~Lr~L~l~~s~~-----~~~~~~l~el~~Le~L~~ls 674 (889)
T KOG4658|consen 608 -------SHLPSGLGNLKKLIYLNLEVTGRLESIP-GILLELQSLRVLRLPRSAL-----SNDKLLLKELENLEHLENLS 674 (889)
T ss_pred -------cccchHHHHHHhhheecccccccccccc-chhhhcccccEEEeecccc-----ccchhhHHhhhcccchhhhe
Confidence 4555555555555555555544443332 2234455666555543321 11123345555555565555
Q ss_pred Ee
Q 003193 388 VH 389 (840)
Q Consensus 388 l~ 389 (840)
+.
T Consensus 675 ~~ 676 (889)
T KOG4658|consen 675 IT 676 (889)
T ss_pred ee
Confidence 53
|
|
| >PLN03210 Resistant to P | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-52 Score=507.26 Aligned_cols=580 Identities=21% Similarity=0.286 Sum_probs=385.1
Q ss_pred CCCCCceEEccCCCHHHHHHHHHHHhCC-CCCCCchhhHHHHHHHHhCCCchhHHHHHHHhcCCCHHHHHHHHHHhhcCC
Q 003193 3 SYEYSEDFLDWLLSNEEASHLFEKIVGH-SAKKSDFETIGVEIVAKCGGLPIAIKTIANALKNKSPRIWKDAVNQLSNSN 81 (840)
Q Consensus 3 ~~~~~~~~~l~~L~~~~s~~Lf~~~a~~-~~~~~~~~~i~~~i~~~c~GlPLai~~~g~~L~~~~~~~W~~~l~~l~~~~ 81 (840)
.++++++|+++.|+++|||+||+++||. ..+++++++++++||++|+|+||||+++|+.|++++.++|+++++++++..
T Consensus 339 ~~~~~~~~~v~~l~~~ea~~LF~~~Af~~~~~~~~~~~l~~~iv~~c~GLPLAl~vlgs~L~~k~~~~W~~~l~~L~~~~ 418 (1153)
T PLN03210 339 AHGIDHIYEVCLPSNELALEMFCRSAFKKNSPPDGFMELASEVALRAGNLPLGLNVLGSYLRGRDKEDWMDMLPRLRNGL 418 (1153)
T ss_pred hcCCCeEEEecCCCHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhCCCcHHHHHHHHHHcCCCHHHHHHHHHHHHhCc
Confidence 5678899999999999999999999994 445668999999999999999999999999999999999999999988654
Q ss_pred CCCcccccccccceeecccccCchhhhhHHHhccCCCCCCccCHHHHHHHHhhcccccccchHHHHHHHHHHHHHHHhhc
Q 003193 82 PRKIQGMDADLSSIELSYEFLKCKEVKSLFQLCGLLKDGSRIAVDDLLRYVMGLRLLTNADTLEAARNRVHTLIDNLKSA 161 (840)
Q Consensus 82 ~~~~~~~~~~~~~l~lSY~~L~~~~lk~cfl~~~~fp~~~~i~~~~li~~wia~gfi~~~~~~~~~~~~~~~~~~~L~~~ 161 (840)
..+| .++|++|||+|+++..|.||+|||+||.++.+ + .+..|+|.+.+.. ...++.|+++
T Consensus 419 ~~~I------~~~L~~SYd~L~~~~~k~~Fl~ia~ff~~~~~--~-~v~~~l~~~~~~~-----------~~~l~~L~~k 478 (1153)
T PLN03210 419 DGKI------EKTLRVSYDGLNNKKDKAIFRHIACLFNGEKV--N-DIKLLLANSDLDV-----------NIGLKNLVDK 478 (1153)
T ss_pred cHHH------HHHHHHhhhccCccchhhhhheehhhcCCCCH--H-HHHHHHHhcCCCc-----------hhChHHHHhc
Confidence 3222 78899999999874489999999999998544 3 3666777765431 1248889999
Q ss_pred cccccCCCCCceEeehhHHHHHHHHHhhce------EeEEecCccchhhhh--hccCCCcEEEeccCCcccCC--c--cc
Q 003193 162 SLLFDGDSEDHAKMHRIIHAIAVSIAAEKL------LFNIQNVADLKEELD--KIDEAPTAISIPFRGIYELP--E--RL 229 (840)
Q Consensus 162 ~l~~~~~~~~~~~mhdli~~l~~~i~~~e~------~~~~~~~~~~~~~~~--~~~~~l~~L~l~~~~~~~l~--~--~~ 229 (840)
||++.. .+.++|||++|+||+.+++++. .+.+... ++..+.. ...++++.+++..+.+..+. . ..
T Consensus 479 sLi~~~--~~~~~MHdLl~~~~r~i~~~~~~~~~~r~~l~~~~-di~~vl~~~~g~~~v~~i~l~~~~~~~~~i~~~aF~ 555 (1153)
T PLN03210 479 SLIHVR--EDIVEMHSLLQEMGKEIVRAQSNEPGEREFLVDAK-DICDVLEDNTGTKKVLGITLDIDEIDELHIHENAFK 555 (1153)
T ss_pred CCEEEc--CCeEEhhhHHHHHHHHHHHhhcCCCCcceeEeCHH-HHHHHHHhCcccceeeEEEeccCccceeeecHHHHh
Confidence 999775 3579999999999999998763 1112211 1111111 23456777777766554321 1 12
Q ss_pred CCCcceeEeeccCc------cccCCCchhhcCCCCCcEEEcCCCCCCCCChhhcCCCCCCEEEccCCccCC-cccccCCC
Q 003193 230 GFLKLKLFLFFTEN------LSLQIPDPFFEGMTELRVLDLTGFRFHSLPSSLGCLINLRTLSLENCLVVD-VAIIGDLK 302 (840)
Q Consensus 230 ~~~~L~~L~l~~~~------~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~-~~~i~~L~ 302 (840)
++++|+.|.+..+. ....+|..+..-..+||.|++.++.++.+|..+ ...+|+.|++.+|.+.. +..+..++
T Consensus 556 ~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f-~~~~L~~L~L~~s~l~~L~~~~~~l~ 634 (1153)
T PLN03210 556 GMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSNF-RPENLVKLQMQGSKLEKLWDGVHSLT 634 (1153)
T ss_pred cCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCCCCCCcC-CccCCcEEECcCccccccccccccCC
Confidence 57777777775432 223455554332345777777777777777666 45677777777777666 66667777
Q ss_pred CCCEEeecCC-CCcccChhhcCCCCCCEEEccCCCCCCccCcccccCCCCCcEEEccCCcccceecCCCCCCcccccCCC
Q 003193 303 KLEILSLKHS-SIEQLPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGNSFTQWKVEGQSNASLGELKQLS 381 (840)
Q Consensus 303 ~L~~L~l~~~-~l~~lp~~i~~L~~L~~L~L~~~~~l~~~p~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~l~ 381 (840)
+|++|+++++ .++.+|. ++.+++|++|++++|..+..+|.. ++++++|+.|++++|......+ ..+ +++
T Consensus 635 ~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~s-i~~L~~L~~L~L~~c~~L~~Lp-------~~i-~l~ 704 (1153)
T PLN03210 635 GLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSS-IQYLNKLEDLDMSRCENLEILP-------TGI-NLK 704 (1153)
T ss_pred CCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchh-hhccCCCCEEeCCCCCCcCccC-------CcC-CCC
Confidence 7777777765 4566663 667777777777777777777765 6777777777777654222111 011 344
Q ss_pred CCCeEEEecCCCCCCCCcccccCcceEEEEEcCccCCCCCccccceEEEeeCCCccchhhHHHHHhcccceeeccccccc
Q 003193 382 RLTTLEVHIPDAQVMPQDLVFVELERFRICIGDVWSWSDGYETSKTLKLQLNNSTYLGYGMKMLLKRTEDLHLDELAGFK 461 (840)
Q Consensus 382 ~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~ 461 (840)
+|+.|+++++... +. +|. ..++|+.|++.++. ++
T Consensus 705 sL~~L~Lsgc~~L-----------~~------------------------------~p~----~~~nL~~L~L~~n~-i~ 738 (1153)
T PLN03210 705 SLYRLNLSGCSRL-----------KS------------------------------FPD----ISTNISWLDLDETA-IE 738 (1153)
T ss_pred CCCEEeCCCCCCc-----------cc------------------------------ccc----ccCCcCeeecCCCc-cc
Confidence 4445444432110 00 000 02345555555443 22
Q ss_pred cccccccchhhcccccEEEeecCCCeEEEEeCCCccccccccceeecccccccccccccccccCCCCcccCCccEEEEec
Q 003193 462 NVVHELDDEEGFARLRHLHVHNGPEILHILNSDGRVGTFPLLESLFLHNLINLEKVCDGKVRLNEDDKSFSNLRIIKVEG 541 (840)
Q Consensus 462 ~~~~~l~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~~~~~L~~L~l~~ 541 (840)
.+|..+ .+++|++|.+.++.....+ . .+..+. + .....+++|+.|++++
T Consensus 739 ~lP~~~----~l~~L~~L~l~~~~~~~l~-~--------------------~~~~l~----~--~~~~~~~sL~~L~Ls~ 787 (1153)
T PLN03210 739 EFPSNL----RLENLDELILCEMKSEKLW-E--------------------RVQPLT----P--LMTMLSPSLTRLFLSD 787 (1153)
T ss_pred cccccc----cccccccccccccchhhcc-c--------------------cccccc----h--hhhhccccchheeCCC
Confidence 333221 3455555555444311100 0 000000 0 0012357899999999
Q ss_pred CCCcccccchhHHhhcccccEEEEecccccceeeccccccccccCCccccccccccceeecccCcccccccCCCCCCCcc
Q 003193 542 CHRVKHLFPFSLVKNLLQLQKVKVTDCTNLKLIVGKESENSAHKNGSISGVYFRKLHFLKLQHLPQLTSSGFDLETPTNT 621 (840)
Q Consensus 542 c~~L~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~c~~L~~~~~~~~~~~~~ 621 (840)
|+.+..+|. .+.++++|+.|+|.+|..++.++.. ..+++|+.|++++|.++..++..
T Consensus 788 n~~l~~lP~--si~~L~~L~~L~Ls~C~~L~~LP~~--------------~~L~sL~~L~Ls~c~~L~~~p~~------- 844 (1153)
T PLN03210 788 IPSLVELPS--SIQNLHKLEHLEIENCINLETLPTG--------------INLESLESLDLSGCSRLRTFPDI------- 844 (1153)
T ss_pred CCCccccCh--hhhCCCCCCEEECCCCCCcCeeCCC--------------CCccccCEEECCCCCcccccccc-------
Confidence 988888863 3678899999999999988887631 15889999999999888776531
Q ss_pred CCCCCcccccCCCCCcccccccccccCCcceEecccccchhhcccCCccccccCCCceEEEecccCCcceeechhhHhhh
Q 003193 622 QGSNPGIIAEGDPKDFTSLFNERVVFPSLKKLKLSSINVEKIWLNSFSAIESWGKNLTKLTVEKCGRLKFLFSSSMVNGL 701 (840)
Q Consensus 622 ~~~~l~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~l~~~~~~~~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~~l 701 (840)
.++|+.|+++++.++.+|.. ...+++|+.|++.+|++++.++.. ...+
T Consensus 845 -------------------------~~nL~~L~Ls~n~i~~iP~s-----i~~l~~L~~L~L~~C~~L~~l~~~--~~~L 892 (1153)
T PLN03210 845 -------------------------STNISDLNLSRTGIEEVPWW-----IEKFSNLSFLDMNGCNNLQRVSLN--ISKL 892 (1153)
T ss_pred -------------------------ccccCEeECCCCCCccChHH-----HhcCCCCCEEECCCCCCcCccCcc--cccc
Confidence 46888999999988876643 246799999999999999998653 6778
Q ss_pred cccceeeecccccchhhhccCcc---cc--cCccccccccccccccccCCcce
Q 003193 702 EQLQQLDISHCKSMNEVINTRVG---RD--DNMIEMVFPKLVSLQLSHLPKLT 749 (840)
Q Consensus 702 ~sL~~L~i~~C~~L~~i~~~~~~---~~--~~~~~~~l~sL~~L~i~~c~~L~ 749 (840)
++|+.|++++|++++.+.. +.. .. .......+|+...+.+.+|.+|.
T Consensus 893 ~~L~~L~l~~C~~L~~~~l-~~~~~~~~~~~~n~~~~~p~~~~l~f~nC~~L~ 944 (1153)
T PLN03210 893 KHLETVDFSDCGALTEASW-NGSPSEVAMATDNIHSKLPSTVCINFINCFNLD 944 (1153)
T ss_pred cCCCeeecCCCcccccccC-CCCchhhhhhcccccccCCchhccccccccCCC
Confidence 9999999999998876632 110 00 00011124555666677776664
|
syringae 6; Provisional |
| >PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-34 Score=352.31 Aligned_cols=483 Identities=18% Similarity=0.157 Sum_probs=221.8
Q ss_pred cCCCcEEEeccCCcc-cCCccc--CCCcceeEeeccCccccCCCchhhcCCCCCcEEEcCCCCCC-CCChhhcCCCCCCE
Q 003193 209 DEAPTAISIPFRGIY-ELPERL--GFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFH-SLPSSLGCLINLRT 284 (840)
Q Consensus 209 ~~~l~~L~l~~~~~~-~l~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~-~lp~~l~~l~~L~~ 284 (840)
.++++.|++++|.+. .+|... .+++|++|++++|.+.+.+|. ..+++|++|++++|.+. .+|..++++++|++
T Consensus 92 l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~---~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~ 168 (968)
T PLN00113 92 LPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR---GSIPNLETLDLSNNMLSGEIPNDIGSFSSLKV 168 (968)
T ss_pred CCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCc---cccCCCCEEECcCCcccccCChHHhcCCCCCE
Confidence 344444444444442 333322 344445555444444444442 23444455555554443 34444555555555
Q ss_pred EEccCCccCC--cccccCCCCCCEEeecCCCCc-ccChhhcCCCCCCEEEccCCCCCCccCcccccCCCCCcEEEccCCc
Q 003193 285 LSLENCLVVD--VAIIGDLKKLEILSLKHSSIE-QLPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGNSF 361 (840)
Q Consensus 285 L~L~~~~~~~--~~~i~~L~~L~~L~l~~~~l~-~lp~~i~~L~~L~~L~L~~~~~l~~~p~~~l~~L~~L~~L~l~~~~ 361 (840)
|++++|.+.. |..++++++|++|++++|.+. .+|..++++++|++|++++|.....+|.. ++++++|++|++++|.
T Consensus 169 L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~L~~n~ 247 (968)
T PLN00113 169 LDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYE-IGGLTSLNHLDLVYNN 247 (968)
T ss_pred EECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChh-HhcCCCCCEEECcCce
Confidence 5555554433 444455555555555554443 34444555555555555543322233333 4455555555554443
Q ss_pred ccceecCCCCCCcccccCCCCCCeEEEecCCCC-CCCCcc-cccCcceEEEEEcC----ccCCCCCccccceEEEeeCCC
Q 003193 362 TQWKVEGQSNASLGELKQLSRLTTLEVHIPDAQ-VMPQDL-VFVELERFRICIGD----VWSWSDGYETSKTLKLQLNNS 435 (840)
Q Consensus 362 ~~~~~~~~~~~~l~~l~~l~~L~~L~l~~~~~~-~~~~~~-~~~~L~~L~l~~~~----~~~~~~~~~~l~~L~l~~~~~ 435 (840)
+.... ...+.++++|+.|+++.|.+. ..|..+ .+.+|+.|++..+. .+.++...++|+.|++.++..
T Consensus 248 l~~~~-------p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~ 320 (968)
T PLN00113 248 LTGPI-------PSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNF 320 (968)
T ss_pred ecccc-------ChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCcc
Confidence 32211 133444445555555444432 122222 34444444443322 122233344444444444333
Q ss_pred cc-chhhHHHHHhcccceeeccccccccccccccchhhcccccEEEeecCCCeEEEEeCCCccccccccceeeccccccc
Q 003193 436 TY-LGYGMKMLLKRTEDLHLDELAGFKNVVHELDDEEGFARLRHLHVHNGPEILHILNSDGRVGTFPLLESLFLHNLINL 514 (840)
Q Consensus 436 ~~-~~~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~~~~L 514 (840)
.. .|.++. .+++|+.|++++|.....++..+ +.+++|+.|++++|.....+ +.....+++|+.|.+.++.-.
T Consensus 321 ~~~~~~~~~-~l~~L~~L~L~~n~l~~~~p~~l---~~~~~L~~L~Ls~n~l~~~~---p~~~~~~~~L~~L~l~~n~l~ 393 (968)
T PLN00113 321 TGKIPVALT-SLPRLQVLQLWSNKFSGEIPKNL---GKHNNLTVLDLSTNNLTGEI---PEGLCSSGNLFKLILFSNSLE 393 (968)
T ss_pred CCcCChhHh-cCCCCCEEECcCCCCcCcCChHH---hCCCCCcEEECCCCeeEeeC---ChhHhCcCCCCEEECcCCEec
Confidence 21 222221 23444444444444333333333 33444444444444311111 111223344444444443211
Q ss_pred ccccccccccCCCCcccCCccEEEEecCCCcccccchhHHhhcccccEEEEecccccceeeccccccccccCCccccccc
Q 003193 515 EKVCDGKVRLNEDDKSFSNLRIIKVEGCHRVKHLFPFSLVKNLLQLQKVKVTDCTNLKLIVGKESENSAHKNGSISGVYF 594 (840)
Q Consensus 515 ~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~l~~l 594 (840)
..++ .....+++|+.|++.+|.-...+| ..+..+++|+.|+++++.-...++. ....+
T Consensus 394 ~~~p-------~~~~~~~~L~~L~L~~n~l~~~~p--~~~~~l~~L~~L~Ls~N~l~~~~~~-------------~~~~l 451 (968)
T PLN00113 394 GEIP-------KSLGACRSLRRVRLQDNSFSGELP--SEFTKLPLVYFLDISNNNLQGRINS-------------RKWDM 451 (968)
T ss_pred ccCC-------HHHhCCCCCCEEECcCCEeeeECC--hhHhcCCCCCEEECcCCcccCccCh-------------hhccC
Confidence 1111 112234555555555543222222 1234455555555554432221110 12245
Q ss_pred cccceeecccCcccccccCCCCCCCccCCCCCcccccCCCCCcccccccccccCCcceEecccccchhhcccCCcccccc
Q 003193 595 RKLHFLKLQHLPQLTSSGFDLETPTNTQGSNPGIIAEGDPKDFTSLFNERVVFPSLKKLKLSSINVEKIWLNSFSAIESW 674 (840)
Q Consensus 595 ~~L~~L~l~~c~~L~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~l~~~~~~~~~~~~~~ 674 (840)
++|+.|++.+|.-...++.. ...++|+.|++++|.+.......+ ..
T Consensus 452 ~~L~~L~L~~n~~~~~~p~~------------------------------~~~~~L~~L~ls~n~l~~~~~~~~----~~ 497 (968)
T PLN00113 452 PSLQMLSLARNKFFGGLPDS------------------------------FGSKRLENLDLSRNQFSGAVPRKL----GS 497 (968)
T ss_pred CCCcEEECcCceeeeecCcc------------------------------cccccceEEECcCCccCCccChhh----hh
Confidence 55555555555433322221 134677778887776654322222 45
Q ss_pred CCCceEEEecccCCcceeechhhHhhhcccceeeecccccchhhhccCcccccCccccccccccccccccCCcceeecCC
Q 003193 675 GKNLTKLTVEKCGRLKFLFSSSMVNGLEQLQQLDISHCKSMNEVINTRVGRDDNMIEMVFPKLVSLQLSHLPKLTRFGIG 754 (840)
Q Consensus 675 l~~L~~L~i~~C~~L~~l~~~~~~~~l~sL~~L~i~~C~~L~~i~~~~~~~~~~~~~~~l~sL~~L~i~~c~~L~~l~~~ 754 (840)
+++|+.|++++|.-...+| ..+.++++|+.|++++|.-...+ |+.+.. +++|+.|++++|.-...+|.
T Consensus 498 l~~L~~L~Ls~N~l~~~~p--~~~~~l~~L~~L~Ls~N~l~~~~---p~~~~~------l~~L~~L~Ls~N~l~~~~p~- 565 (968)
T PLN00113 498 LSELMQLKLSENKLSGEIP--DELSSCKKLVSLDLSHNQLSGQI---PASFSE------MPVLSQLDLSQNQLSGEIPK- 565 (968)
T ss_pred hhccCEEECcCCcceeeCC--hHHcCccCCCEEECCCCcccccC---ChhHhC------cccCCEEECCCCcccccCCh-
Confidence 6777788887664333443 23667777888888776543333 444433 77788888877765545553
Q ss_pred CCccCCCcceEEeccCCCcceee
Q 003193 755 DSVEFPSLCQLQIACCPNLKIFI 777 (840)
Q Consensus 755 ~~~~l~sL~~L~i~~C~~L~~l~ 777 (840)
.+.++++|+.|++++|+-...+|
T Consensus 566 ~l~~l~~L~~l~ls~N~l~~~~p 588 (968)
T PLN00113 566 NLGNVESLVQVNISHNHLHGSLP 588 (968)
T ss_pred hHhcCcccCEEeccCCcceeeCC
Confidence 33456778888888877665555
|
|
| >PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-33 Score=339.36 Aligned_cols=481 Identities=17% Similarity=0.152 Sum_probs=360.4
Q ss_pred ccCCCcEEEeccCCcccCCcccCCCcceeEeeccCccccCCCchhhcCCCCCcEEEcCCCCCC-CCChhhcCCCCCCEEE
Q 003193 208 IDEAPTAISIPFRGIYELPERLGFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFH-SLPSSLGCLINLRTLS 286 (840)
Q Consensus 208 ~~~~l~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~-~lp~~l~~l~~L~~L~ 286 (840)
...++++|++++|.+....+...+++|++|++++|.+.+.+|..+ .++++|++|++++|.+. .+|..++++++|++|+
T Consensus 116 ~l~~L~~L~Ls~n~l~~~~p~~~l~~L~~L~Ls~n~~~~~~p~~~-~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ 194 (968)
T PLN00113 116 TSSSLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNMLSGEIPNDI-GSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLT 194 (968)
T ss_pred cCCCCCEEECcCCccccccCccccCCCCEEECcCCcccccCChHH-hcCCCCCEEECccCcccccCChhhhhCcCCCeee
Confidence 568999999999988543333468999999999999987888775 89999999999999986 7899999999999999
Q ss_pred ccCCccCC--cccccCCCCCCEEeecCCCCc-ccChhhcCCCCCCEEEccCCCCCCccCcccccCCCCCcEEEccCCccc
Q 003193 287 LENCLVVD--VAIIGDLKKLEILSLKHSSIE-QLPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGNSFTQ 363 (840)
Q Consensus 287 L~~~~~~~--~~~i~~L~~L~~L~l~~~~l~-~lp~~i~~L~~L~~L~L~~~~~l~~~p~~~l~~L~~L~~L~l~~~~~~ 363 (840)
+++|.+.. |..++++++|++|++++|+++ .+|..++++++|++|++++|...+.+|.. ++++++|++|++++|.+.
T Consensus 195 L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~L~~n~l~ 273 (968)
T PLN00113 195 LASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSS-LGNLKNLQYLFLYQNKLS 273 (968)
T ss_pred ccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChh-HhCCCCCCEEECcCCeee
Confidence 99999876 889999999999999999887 78999999999999999996555566765 899999999999998765
Q ss_pred ceecCCCCCCcccccCCCCCCeEEEecCCCC-CCCCcc-cccCcceEEEEEcCc----cCCCCCccccceEEEeeCCCc-
Q 003193 364 WKVEGQSNASLGELKQLSRLTTLEVHIPDAQ-VMPQDL-VFVELERFRICIGDV----WSWSDGYETSKTLKLQLNNST- 436 (840)
Q Consensus 364 ~~~~~~~~~~l~~l~~l~~L~~L~l~~~~~~-~~~~~~-~~~~L~~L~l~~~~~----~~~~~~~~~l~~L~l~~~~~~- 436 (840)
... ...+.++++|+.|++++|.+. .+|..+ .+++|+.|++..+.. +.++...++|+.|+++++...
T Consensus 274 ~~~-------p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~ 346 (968)
T PLN00113 274 GPI-------PPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSG 346 (968)
T ss_pred ccC-------chhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcC
Confidence 332 256778899999999988775 344443 678899998876543 345667889999999987765
Q ss_pred cchhhHHHHHhcccceeeccccccccccccccchhhcccccEEEeecCCCeEEEEeCCCccccccccceeeccccccccc
Q 003193 437 YLGYGMKMLLKRTEDLHLDELAGFKNVVHELDDEEGFARLRHLHVHNGPEILHILNSDGRVGTFPLLESLFLHNLINLEK 516 (840)
Q Consensus 437 ~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~~~~L~~ 516 (840)
..|.++.. +++|+.|++++|......+..+ ..+++|+.|++.+|.....+ ......+++|+.|++.++.--..
T Consensus 347 ~~p~~l~~-~~~L~~L~Ls~n~l~~~~p~~~---~~~~~L~~L~l~~n~l~~~~---p~~~~~~~~L~~L~L~~n~l~~~ 419 (968)
T PLN00113 347 EIPKNLGK-HNNLTVLDLSTNNLTGEIPEGL---CSSGNLFKLILFSNSLEGEI---PKSLGACRSLRRVRLQDNSFSGE 419 (968)
T ss_pred cCChHHhC-CCCCcEEECCCCeeEeeCChhH---hCcCCCCEEECcCCEecccC---CHHHhCCCCCCEEECcCCEeeeE
Confidence 45555543 6899999999998776677666 66889999999998632222 22346789999999998753322
Q ss_pred ccccccccCCCCcccCCccEEEEecCCCcccccchhHHhhcccccEEEEecccccceeeccccccccccCCccccccccc
Q 003193 517 VCDGKVRLNEDDKSFSNLRIIKVEGCHRVKHLFPFSLVKNLLQLQKVKVTDCTNLKLIVGKESENSAHKNGSISGVYFRK 596 (840)
Q Consensus 517 ~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~l~~l~~ 596 (840)
.+ .....+++|+.|+++++. +....+. ....+++|+.|++++|.....++. ....++
T Consensus 420 ~p-------~~~~~l~~L~~L~Ls~N~-l~~~~~~-~~~~l~~L~~L~L~~n~~~~~~p~--------------~~~~~~ 476 (968)
T PLN00113 420 LP-------SEFTKLPLVYFLDISNNN-LQGRINS-RKWDMPSLQMLSLARNKFFGGLPD--------------SFGSKR 476 (968)
T ss_pred CC-------hhHhcCCCCCEEECcCCc-ccCccCh-hhccCCCCcEEECcCceeeeecCc--------------cccccc
Confidence 22 124578999999999875 4443332 245789999999999976654442 114578
Q ss_pred cceeecccCcccccccCCCCCCCccCCCCCcccccCCCCCcccccccccccCCcceEecccccchhhcccCCccccccCC
Q 003193 597 LHFLKLQHLPQLTSSGFDLETPTNTQGSNPGIIAEGDPKDFTSLFNERVVFPSLKKLKLSSINVEKIWLNSFSAIESWGK 676 (840)
Q Consensus 597 L~~L~l~~c~~L~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~l~~~~~~~~~~~~~~l~ 676 (840)
|+.|+++++.-...++.. +..+++|+.|++++|.+....... ...++
T Consensus 477 L~~L~ls~n~l~~~~~~~-----------------------------~~~l~~L~~L~Ls~N~l~~~~p~~----~~~l~ 523 (968)
T PLN00113 477 LENLDLSRNQFSGAVPRK-----------------------------LGSLSELMQLKLSENKLSGEIPDE----LSSCK 523 (968)
T ss_pred ceEEECcCCccCCccChh-----------------------------hhhhhccCEEECcCCcceeeCChH----HcCcc
Confidence 999999988644443322 245788889999998766432222 24678
Q ss_pred CceEEEecccCCcceeechhhHhhhcccceeeecccccchhhhccCcccccCccccccccccccccccCCcceeecCCCC
Q 003193 677 NLTKLTVEKCGRLKFLFSSSMVNGLEQLQQLDISHCKSMNEVINTRVGRDDNMIEMVFPKLVSLQLSHLPKLTRFGIGDS 756 (840)
Q Consensus 677 ~L~~L~i~~C~~L~~l~~~~~~~~l~sL~~L~i~~C~~L~~i~~~~~~~~~~~~~~~l~sL~~L~i~~c~~L~~l~~~~~ 756 (840)
+|+.|+|++|.-...+| ..+..+++|++|++++|.-...+ |..+.. +++|+.|++++|+-...+|..+
T Consensus 524 ~L~~L~Ls~N~l~~~~p--~~~~~l~~L~~L~Ls~N~l~~~~---p~~l~~------l~~L~~l~ls~N~l~~~~p~~~- 591 (968)
T PLN00113 524 KLVSLDLSHNQLSGQIP--ASFSEMPVLSQLDLSQNQLSGEI---PKNLGN------VESLVQVNISHNHLHGSLPSTG- 591 (968)
T ss_pred CCCEEECCCCcccccCC--hhHhCcccCCEEECCCCcccccC---ChhHhc------CcccCEEeccCCcceeeCCCcc-
Confidence 89999997775433333 34778889999999987755555 665544 7889999999988666777543
Q ss_pred ccCCCcceEEeccCCCc
Q 003193 757 VEFPSLCQLQIACCPNL 773 (840)
Q Consensus 757 ~~l~sL~~L~i~~C~~L 773 (840)
.+.++....+.+.|.+
T Consensus 592 -~~~~~~~~~~~~n~~l 607 (968)
T PLN00113 592 -AFLAINASAVAGNIDL 607 (968)
T ss_pred -hhcccChhhhcCCccc
Confidence 3444444455555544
|
|
| >PLN03210 Resistant to P | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.3e-23 Score=256.85 Aligned_cols=345 Identities=20% Similarity=0.261 Sum_probs=264.6
Q ss_pred hccCCCcEEEeccCCc-------ccCCccc-CC-CcceeEeeccCccccCCCchhhcCCCCCcEEEcCCCCCCCCChhhc
Q 003193 207 KIDEAPTAISIPFRGI-------YELPERL-GF-LKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPSSLG 277 (840)
Q Consensus 207 ~~~~~l~~L~l~~~~~-------~~l~~~~-~~-~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~l~ 277 (840)
..+.+++.|.+..+.. ..+|..+ .+ .+||.|.+.++.. ..+|..+ ...+|+.|++.++.+..+|..+.
T Consensus 555 ~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l-~~lP~~f--~~~~L~~L~L~~s~l~~L~~~~~ 631 (1153)
T PLN03210 555 KGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPL-RCMPSNF--RPENLVKLQMQGSKLEKLWDGVH 631 (1153)
T ss_pred hcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCC-CCCCCcC--CccCCcEEECcCccccccccccc
Confidence 4577888888865532 2345544 23 4699999988765 3677765 57899999999999999999999
Q ss_pred CCCCCCEEEccCCc-cCCcccccCCCCCCEEeecCC-CCcccChhhcCCCCCCEEEccCCCCCCccCcccccCCCCCcEE
Q 003193 278 CLINLRTLSLENCL-VVDVAIIGDLKKLEILSLKHS-SIEQLPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEEL 355 (840)
Q Consensus 278 ~l~~L~~L~L~~~~-~~~~~~i~~L~~L~~L~l~~~-~l~~lp~~i~~L~~L~~L~L~~~~~l~~~p~~~l~~L~~L~~L 355 (840)
.+++|++|+++++. +..++.++.+++|++|++++| .+..+|..++++++|++|++++|+.++.+|.. + ++++|+.|
T Consensus 632 ~l~~Lk~L~Ls~~~~l~~ip~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~-i-~l~sL~~L 709 (1153)
T PLN03210 632 SLTGLRNIDLRGSKNLKEIPDLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTG-I-NLKSLYRL 709 (1153)
T ss_pred cCCCCCEEECCCCCCcCcCCccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCc-C-CCCCCCEE
Confidence 99999999999886 445667999999999999998 78899999999999999999999999999986 3 89999999
Q ss_pred EccCCcccceecCCCCCCcccccCCCCCCeEEEecCCCCCCCCcccccCcceEEEEEcCccCCCCCccccceEEEeeCCC
Q 003193 356 YMGNSFTQWKVEGQSNASLGELKQLSRLTTLEVHIPDAQVMPQDLVFVELERFRICIGDVWSWSDGYETSKTLKLQLNNS 435 (840)
Q Consensus 356 ~l~~~~~~~~~~~~~~~~l~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~l~~~~~ 435 (840)
++++|......+ . ...+|+.|+++.+.+..+|..+.+++|+.|.+....... +.. ..
T Consensus 710 ~Lsgc~~L~~~p--------~--~~~nL~~L~L~~n~i~~lP~~~~l~~L~~L~l~~~~~~~------------l~~-~~ 766 (1153)
T PLN03210 710 NLSGCSRLKSFP--------D--ISTNISWLDLDETAIEEFPSNLRLENLDELILCEMKSEK------------LWE-RV 766 (1153)
T ss_pred eCCCCCCccccc--------c--ccCCcCeeecCCCccccccccccccccccccccccchhh------------ccc-cc
Confidence 999985432221 1 235789999999998888887777788777664211100 000 00
Q ss_pred ccchhhHHHHHhcccceeeccccccccccccccchhhcccccEEEeecCCCeEEEEeCCCccccccccceeecccccccc
Q 003193 436 TYLGYGMKMLLKRTEDLHLDELAGFKNVVHELDDEEGFARLRHLHVHNGPEILHILNSDGRVGTFPLLESLFLHNLINLE 515 (840)
Q Consensus 436 ~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~~~~L~ 515 (840)
...+......+++|+.|++++|.....+|..+ +++++|+.|++++|..++.++.. ..+++|+.|++++|..+.
T Consensus 767 ~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si---~~L~~L~~L~Ls~C~~L~~LP~~----~~L~sL~~L~Ls~c~~L~ 839 (1153)
T PLN03210 767 QPLTPLMTMLSPSLTRLFLSDIPSLVELPSSI---QNLHKLEHLEIENCINLETLPTG----INLESLESLDLSGCSRLR 839 (1153)
T ss_pred cccchhhhhccccchheeCCCCCCccccChhh---hCCCCCCEEECCCCCCcCeeCCC----CCccccCEEECCCCCccc
Confidence 11111122234689999999998888888877 78999999999999888877543 268899999999998887
Q ss_pred cccccccccCCCCcccCCccEEEEecCCCcccccchhHHhhcccccEEEEecccccceeeccccccccccCCcccccccc
Q 003193 516 KVCDGKVRLNEDDKSFSNLRIIKVEGCHRVKHLFPFSLVKNLLQLQKVKVTDCTNLKLIVGKESENSAHKNGSISGVYFR 595 (840)
Q Consensus 516 ~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~l~~l~ 595 (840)
.++. ..++|+.|++++. .++.+|. .+..+++|+.|++.+|++++.++. ....++
T Consensus 840 ~~p~----------~~~nL~~L~Ls~n-~i~~iP~--si~~l~~L~~L~L~~C~~L~~l~~-------------~~~~L~ 893 (1153)
T PLN03210 840 TFPD----------ISTNISDLNLSRT-GIEEVPW--WIEKFSNLSFLDMNGCNNLQRVSL-------------NISKLK 893 (1153)
T ss_pred cccc----------cccccCEeECCCC-CCccChH--HHhcCCCCCEEECCCCCCcCccCc-------------cccccc
Confidence 6532 3468999999874 6777753 467899999999999999988764 334788
Q ss_pred ccceeecccCccccccc
Q 003193 596 KLHFLKLQHLPQLTSSG 612 (840)
Q Consensus 596 ~L~~L~l~~c~~L~~~~ 612 (840)
+|+.+.+.+|++|+.++
T Consensus 894 ~L~~L~l~~C~~L~~~~ 910 (1153)
T PLN03210 894 HLETVDFSDCGALTEAS 910 (1153)
T ss_pred CCCeeecCCCccccccc
Confidence 89999999999887654
|
syringae 6; Provisional |
| >KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.9e-24 Score=222.80 Aligned_cols=394 Identities=19% Similarity=0.188 Sum_probs=251.7
Q ss_pred hhhccCCCcEEEeccCCcccCCcc----cCCCcceeEeeccCccccCCCchhhcCCCCCcEEEcCCCCCCCCChhhcCCC
Q 003193 205 LDKIDEAPTAISIPFRGIYELPER----LGFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPSSLGCLI 280 (840)
Q Consensus 205 ~~~~~~~l~~L~l~~~~~~~l~~~----~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~l~~l~ 280 (840)
|....-..+-++.+.+.+..+... .-.+.-++|++++|.+. .+...+|.++++|+.+++..|.++.+|...+...
T Consensus 47 pa~c~c~~~lldcs~~~lea~~~~~l~g~lp~~t~~LdlsnNkl~-~id~~~f~nl~nLq~v~l~~N~Lt~IP~f~~~sg 125 (873)
T KOG4194|consen 47 PATCPCNTRLLDCSDRELEAIDKSRLKGFLPSQTQTLDLSNNKLS-HIDFEFFYNLPNLQEVNLNKNELTRIPRFGHESG 125 (873)
T ss_pred CCcCCCCceeeecCccccccccccccCCcCccceeeeeccccccc-cCcHHHHhcCCcceeeeeccchhhhccccccccc
Confidence 444455666777777776554322 12345567888877765 3444556788888888888888888887777777
Q ss_pred CCCEEEccCCccCC--cccccCCCCCCEEeecCCCCcccCh-hhcCCCCCCEEEccCCCCCCccCcccccCCCCCcEEEc
Q 003193 281 NLRTLSLENCLVVD--VAIIGDLKKLEILSLKHSSIEQLPR-EIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYM 357 (840)
Q Consensus 281 ~L~~L~L~~~~~~~--~~~i~~L~~L~~L~l~~~~l~~lp~-~i~~L~~L~~L~L~~~~~l~~~p~~~l~~L~~L~~L~l 357 (840)
||+.|+|.+|.|.. -+.+.-++.||.|||+.|.|+++|. .+..-.++++|+|++ +.++.+..+.|..+.+|-+|.+
T Consensus 126 hl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~-N~It~l~~~~F~~lnsL~tlkL 204 (873)
T KOG4194|consen 126 HLEKLDLRHNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLAS-NRITTLETGHFDSLNSLLTLKL 204 (873)
T ss_pred ceeEEeeeccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeecc-ccccccccccccccchheeeec
Confidence 78888888888777 4667778888888888888887763 345556788888887 6777777777778888888888
Q ss_pred cCCcccceecCCCCCCcccccCCCCCCeEEEecCCCCCCCCcccccCcceEEEEEcCccCCCCCccccceEEEeeCCCcc
Q 003193 358 GNSFTQWKVEGQSNASLGELKQLSRLTTLEVHIPDAQVMPQDLVFVELERFRICIGDVWSWSDGYETSKTLKLQLNNSTY 437 (840)
Q Consensus 358 ~~~~~~~~~~~~~~~~l~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~l~~~~~~~ 437 (840)
+.|.+.... ...+++|++|+.|++..|.+..+.. -.+..+++++.+++..+....
T Consensus 205 srNrittLp-------~r~Fk~L~~L~~LdLnrN~irive~------------------ltFqgL~Sl~nlklqrN~I~k 259 (873)
T KOG4194|consen 205 SRNRITTLP-------QRSFKRLPKLESLDLNRNRIRIVEG------------------LTFQGLPSLQNLKLQRNDISK 259 (873)
T ss_pred ccCcccccC-------HHHhhhcchhhhhhccccceeeehh------------------hhhcCchhhhhhhhhhcCccc
Confidence 877765322 2556777778888877766543221 113344455556666666666
Q ss_pred chhhHHHHHhcccceeeccccccccccccccchhhcccccEEEeecCCCeEEEEeCCCccccccccceeecccccccccc
Q 003193 438 LGYGMKMLLKRTEDLHLDELAGFKNVVHELDDEEGFARLRHLHVHNGPEILHILNSDGRVGTFPLLESLFLHNLINLEKV 517 (840)
Q Consensus 438 ~~~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~ 517 (840)
+.++++..+.++++|+|+.|.....-..++ -++..|+.|+++.+. ++.+.. ..-...++|+.|+++. +.+.++
T Consensus 260 L~DG~Fy~l~kme~l~L~~N~l~~vn~g~l---fgLt~L~~L~lS~Na-I~rih~--d~WsftqkL~~LdLs~-N~i~~l 332 (873)
T KOG4194|consen 260 LDDGAFYGLEKMEHLNLETNRLQAVNEGWL---FGLTSLEQLDLSYNA-IQRIHI--DSWSFTQKLKELDLSS-NRITRL 332 (873)
T ss_pred ccCcceeeecccceeecccchhhhhhcccc---cccchhhhhccchhh-hheeec--chhhhcccceeEeccc-cccccC
Confidence 666666667788888888776554444455 457888888888875 333321 1113456778888776 556666
Q ss_pred cccccccCCCCcccCCccEEEEecCCCcccccchhHHhhcccccEEEEecccccceeeccccccccccCCcccccccccc
Q 003193 518 CDGKVRLNEDDKSFSNLRIIKVEGCHRVKHLFPFSLVKNLLQLQKVKVTDCTNLKLIVGKESENSAHKNGSISGVYFRKL 597 (840)
Q Consensus 518 ~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~l~~l~~L 597 (840)
..+.+ ..+..|++|.++. +++.++. ...+..+.+|++|++++..---.+ ++....+..+|+|
T Consensus 333 ~~~sf------~~L~~Le~LnLs~-Nsi~~l~-e~af~~lssL~~LdLr~N~ls~~I----------EDaa~~f~gl~~L 394 (873)
T KOG4194|consen 333 DEGSF------RVLSQLEELNLSH-NSIDHLA-EGAFVGLSSLHKLDLRSNELSWCI----------EDAAVAFNGLPSL 394 (873)
T ss_pred ChhHH------HHHHHhhhhcccc-cchHHHH-hhHHHHhhhhhhhcCcCCeEEEEE----------ecchhhhccchhh
Confidence 54443 2567777777776 4555552 234566778888877764321111 1111244467777
Q ss_pred ceeecccCcccccccCCCCCCCccCCCCCcccccCCCCCcccccccccccCCcceEecccccchhhcccCCccccccCCC
Q 003193 598 HFLKLQHLPQLTSSGFDLETPTNTQGSNPGIIAEGDPKDFTSLFNERVVFPSLKKLKLSSINVEKIWLNSFSAIESWGKN 677 (840)
Q Consensus 598 ~~L~l~~c~~L~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~l~~~~~~~~~~~~~~l~~ 677 (840)
++|.+.+. ++++++... +..+++|+.|++.+|.+.++-...+. .+ .
T Consensus 395 rkL~l~gN-qlk~I~krA----------------------------fsgl~~LE~LdL~~NaiaSIq~nAFe----~m-~ 440 (873)
T KOG4194|consen 395 RKLRLTGN-QLKSIPKRA----------------------------FSGLEALEHLDLGDNAIASIQPNAFE----PM-E 440 (873)
T ss_pred hheeecCc-eeeecchhh----------------------------hccCcccceecCCCCcceeecccccc----cc-h
Confidence 77777763 556555421 24567777777777777666555542 22 5
Q ss_pred ceEEEec
Q 003193 678 LTKLTVE 684 (840)
Q Consensus 678 L~~L~i~ 684 (840)
|++|.+.
T Consensus 441 Lk~Lv~n 447 (873)
T KOG4194|consen 441 LKELVMN 447 (873)
T ss_pred hhhhhhc
Confidence 6666553
|
|
| >KOG0472 consensus Leucine-rich repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.89 E-value=7.9e-27 Score=229.99 Aligned_cols=477 Identities=19% Similarity=0.206 Sum_probs=261.5
Q ss_pred cEEEeccCCcccCCccc-CCCcceeEeeccCccccCCCchhhcCCCCCcEEEcCCCCCCCCChhhcCCCCCCEEEccCCc
Q 003193 213 TAISIPFRGIYELPERL-GFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPSSLGCLINLRTLSLENCL 291 (840)
Q Consensus 213 ~~L~l~~~~~~~l~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~l~~l~~L~~L~L~~~~ 291 (840)
..+.++.|.+..+.... .+..+.++.+++|... .+|+++ +.+..+..|+.++|++..+|+.++.+..|+.|+.++|.
T Consensus 48 ~~lils~N~l~~l~~dl~nL~~l~vl~~~~n~l~-~lp~ai-g~l~~l~~l~vs~n~ls~lp~~i~s~~~l~~l~~s~n~ 125 (565)
T KOG0472|consen 48 QKLILSHNDLEVLREDLKNLACLTVLNVHDNKLS-QLPAAI-GELEALKSLNVSHNKLSELPEQIGSLISLVKLDCSSNE 125 (565)
T ss_pred hhhhhccCchhhccHhhhcccceeEEEeccchhh-hCCHHH-HHHHHHHHhhcccchHhhccHHHhhhhhhhhhhccccc
Confidence 34455555554443333 4556666666666554 445544 55566666666666666666666666666666666666
Q ss_pred cCC-cccccCCCCCCEEeecCCCCcccChhhcCCCCCCEEEccCCCCCCccCcccccCCCCCcEEEccCCcccceecCCC
Q 003193 292 VVD-VAIIGDLKKLEILSLKHSSIEQLPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGNSFTQWKVEGQS 370 (840)
Q Consensus 292 ~~~-~~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~L~~~~~l~~~p~~~l~~L~~L~~L~l~~~~~~~~~~~~~ 370 (840)
+.. +++|+.+..|+.|+..+|+++.+|.+++++.+|..|++.+ ++++.+|++.+. ++.|++|+...|...
T Consensus 126 ~~el~~~i~~~~~l~dl~~~~N~i~slp~~~~~~~~l~~l~~~~-n~l~~l~~~~i~-m~~L~~ld~~~N~L~------- 196 (565)
T KOG0472|consen 126 LKELPDSIGRLLDLEDLDATNNQISSLPEDMVNLSKLSKLDLEG-NKLKALPENHIA-MKRLKHLDCNSNLLE------- 196 (565)
T ss_pred eeecCchHHHHhhhhhhhccccccccCchHHHHHHHHHHhhccc-cchhhCCHHHHH-HHHHHhcccchhhhh-------
Confidence 655 6666666666666666666666666666666666666666 556666655333 666666665554332
Q ss_pred CCCcccccCCCCCCeEEEecCCCCCCCCcccccCcceEEEEEcCcc----CCCCCccccceEEEeeCCCccchhhHHHHH
Q 003193 371 NASLGELKQLSRLTTLEVHIPDAQVMPQDLVFVELERFRICIGDVW----SWSDGYETSKTLKLQLNNSTYLGYGMKMLL 446 (840)
Q Consensus 371 ~~~l~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~----~~~~~~~~l~~L~l~~~~~~~~~~~~~~~l 446 (840)
....+++.+.+|..|++..|.+..+|+.-++..|..+++..+.+. +.....+.+..|++..+.....|..+.- +
T Consensus 197 -tlP~~lg~l~~L~~LyL~~Nki~~lPef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklke~Pde~cl-L 274 (565)
T KOG0472|consen 197 -TLPPELGGLESLELLYLRRNKIRFLPEFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLKEVPDEICL-L 274 (565)
T ss_pred -cCChhhcchhhhHHHHhhhcccccCCCCCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccccccCchHHHH-h
Confidence 222555556666666666666665554334455555544333211 1133556677788888888888877764 6
Q ss_pred hcccceeeccccccccccccccchhhcccccEEEeecCCCeEEEEeCCCccccccccceeec-cccccccccccc-----
Q 003193 447 KRTEDLHLDELAGFKNVVHELDDEEGFARLRHLHVHNGPEILHILNSDGRVGTFPLLESLFL-HNLINLEKVCDG----- 520 (840)
Q Consensus 447 ~~L~~L~L~~~~~~~~~~~~l~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l-~~~~~L~~~~~~----- 520 (840)
.+|+.|+++++. +..+|..+ +++ .|+.|.+.+++ ++.+-.+....+.-.-|++|.= ..+..+..-..+
T Consensus 275 rsL~rLDlSNN~-is~Lp~sL---gnl-hL~~L~leGNP-lrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~ 348 (565)
T KOG0472|consen 275 RSLERLDLSNND-ISSLPYSL---GNL-HLKFLALEGNP-LRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAM 348 (565)
T ss_pred hhhhhhcccCCc-cccCCccc---ccc-eeeehhhcCCc-hHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccC
Confidence 788899998765 45667777 777 88999988887 2221111000011111222221 001111100000
Q ss_pred ccc-c-CCCCcccCCccEEEEecCCCcccccchhHHhhcc--cccEEEEecccccceeeccccccccccCCccccccccc
Q 003193 521 KVR-L-NEDDKSFSNLRIIKVEGCHRVKHLFPFSLVKNLL--QLQKVKVTDCTNLKLIVGKESENSAHKNGSISGVYFRK 596 (840)
Q Consensus 521 ~~~-~-~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~l~--~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~l~~l~~ 596 (840)
..+ . ......+.+.+.|.+++ ..++.+|.. .++.-. -...++++. ..+.++|. .+..+..
T Consensus 349 t~~~~~~~~~~~~i~tkiL~~s~-~qlt~VPdE-Vfea~~~~~Vt~Vnfsk-NqL~elPk-------------~L~~lke 412 (565)
T KOG0472|consen 349 TLPSESFPDIYAIITTKILDVSD-KQLTLVPDE-VFEAAKSEIVTSVNFSK-NQLCELPK-------------RLVELKE 412 (565)
T ss_pred CCCCCcccchhhhhhhhhhcccc-cccccCCHH-HHHHhhhcceEEEeccc-chHhhhhh-------------hhHHHHH
Confidence 000 0 01123456677888876 467777543 322221 133444444 23444432 1222222
Q ss_pred cceeecccCcccccccCCCCCCCccCCCCCcccccCCCCCcccccccccccCCcceEecccccchhhcccCCccccccCC
Q 003193 597 LHFLKLQHLPQLTSSGFDLETPTNTQGSNPGIIAEGDPKDFTSLFNERVVFPSLKKLKLSSINVEKIWLNSFSAIESWGK 676 (840)
Q Consensus 597 L~~L~l~~c~~L~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~l~~~~~~~~~~~~~~l~ 676 (840)
+.+.-+.+...+..++. .+..+++|..|++++|-+.++|.+.. .+.
T Consensus 413 lvT~l~lsnn~isfv~~-----------------------------~l~~l~kLt~L~L~NN~Ln~LP~e~~-----~lv 458 (565)
T KOG0472|consen 413 LVTDLVLSNNKISFVPL-----------------------------ELSQLQKLTFLDLSNNLLNDLPEEMG-----SLV 458 (565)
T ss_pred HHHHHHhhcCccccchH-----------------------------HHHhhhcceeeecccchhhhcchhhh-----hhh
Confidence 22222222222222111 12457888888888887777776543 456
Q ss_pred CceEEEecccCCcceeechhhHhhhcccceeeecccccchhhhccCcccccCccccccccccccccccCCcceeecCCCC
Q 003193 677 NLTKLTVEKCGRLKFLFSSSMVNGLEQLQQLDISHCKSMNEVINTRVGRDDNMIEMVFPKLVSLQLSHLPKLTRFGIGDS 756 (840)
Q Consensus 677 ~L~~L~i~~C~~L~~l~~~~~~~~l~sL~~L~i~~C~~L~~i~~~~~~~~~~~~~~~l~sL~~L~i~~c~~L~~l~~~~~ 756 (840)
.|+.|+|+.. +.+.+| .....+..|+.+-+++ .++.++. +.|+.. +.+|.+|++.+. .++.+|. .+
T Consensus 459 ~Lq~LnlS~N-rFr~lP--~~~y~lq~lEtllas~-nqi~~vd--~~~l~n------m~nL~tLDL~nN-dlq~IPp-~L 524 (565)
T KOG0472|consen 459 RLQTLNLSFN-RFRMLP--ECLYELQTLETLLASN-NQIGSVD--PSGLKN------MRNLTTLDLQNN-DLQQIPP-IL 524 (565)
T ss_pred hhheeccccc-ccccch--HHHhhHHHHHHHHhcc-ccccccC--hHHhhh------hhhcceeccCCC-chhhCCh-hh
Confidence 7888888554 666664 2244444555555554 5666663 334433 778888888665 5777775 34
Q ss_pred ccCCCcceEEeccCCC
Q 003193 757 VEFPSLCQLQIACCPN 772 (840)
Q Consensus 757 ~~l~sL~~L~i~~C~~ 772 (840)
.++++|++|.+++-|-
T Consensus 525 gnmtnL~hLeL~gNpf 540 (565)
T KOG0472|consen 525 GNMTNLRHLELDGNPF 540 (565)
T ss_pred ccccceeEEEecCCcc
Confidence 4788888888888763
|
|
| >KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.88 E-value=4.8e-23 Score=212.52 Aligned_cols=338 Identities=17% Similarity=0.213 Sum_probs=227.1
Q ss_pred hccCCCcEEEeccCCcccCCcccC-CCcceeEeeccCccccCCCchhhcCCCCCcEEEcCCCCCCCCCh-hhcCCCCCCE
Q 003193 207 KIDEAPTAISIPFRGIYELPERLG-FLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPS-SLGCLINLRT 284 (840)
Q Consensus 207 ~~~~~l~~L~l~~~~~~~l~~~~~-~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~-~l~~l~~L~~ 284 (840)
....+++.+++..|.+..+|.... ..+++.|++.+|.+. .+..+-+.-++.||+|||+.|.++++|. ++..=.++++
T Consensus 99 ~nl~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~N~I~-sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~ 177 (873)
T KOG4194|consen 99 YNLPNLQEVNLNKNELTRIPRFGHESGHLEKLDLRHNLIS-SVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKK 177 (873)
T ss_pred hcCCcceeeeeccchhhhcccccccccceeEEeeeccccc-cccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceE
Confidence 345667777777777777776663 445777777777665 3334444667777777777777776653 3555567777
Q ss_pred EEccCCccCC--cccccCCCCCCEEeecCCCCcccChh-hcCCCCCCEEEccCCCCCCccCcccccCCCCCcEEEccCCc
Q 003193 285 LSLENCLVVD--VAIIGDLKKLEILSLKHSSIEQLPRE-IGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGNSF 361 (840)
Q Consensus 285 L~L~~~~~~~--~~~i~~L~~L~~L~l~~~~l~~lp~~-i~~L~~L~~L~L~~~~~l~~~p~~~l~~L~~L~~L~l~~~~ 361 (840)
|+|++|.|+. ...|..+.+|-+|.|+.|+++.+|.. +.+|++|+.|+|.. +.++.+..-.|..|.+|+.|.+..|.
T Consensus 178 L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnr-N~irive~ltFqgL~Sl~nlklqrN~ 256 (873)
T KOG4194|consen 178 LNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNR-NRIRIVEGLTFQGLPSLQNLKLQRND 256 (873)
T ss_pred EeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccc-cceeeehhhhhcCchhhhhhhhhhcC
Confidence 7777777777 46677777777777777777777754 44577777777777 56666544446777777777777765
Q ss_pred ccceecCCCCCCcccccCCCCCCeEEEecCCCCCCCCc--ccccCcceEEEEEcCccC----CCCCccccceEEEeeCCC
Q 003193 362 TQWKVEGQSNASLGELKQLSRLTTLEVHIPDAQVMPQD--LVFVELERFRICIGDVWS----WSDGYETSKTLKLQLNNS 435 (840)
Q Consensus 362 ~~~~~~~~~~~~l~~l~~l~~L~~L~l~~~~~~~~~~~--~~~~~L~~L~l~~~~~~~----~~~~~~~l~~L~l~~~~~ 435 (840)
+..-.+ +.+-.+.++++|++..|.+..+.+. .++..|+.|+++.+.+.. .....+.|+.|+|+.+..
T Consensus 257 I~kL~D-------G~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i 329 (873)
T KOG4194|consen 257 ISKLDD-------GAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRI 329 (873)
T ss_pred cccccC-------cceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEecccccc
Confidence 543222 3444567777888887777766554 277777777777665432 234567788888888888
Q ss_pred ccchhhHHHHHhcccceeeccccccccccccccchhhcccccEEEeecCCCeEEEEeCCCccccccccceeecccccccc
Q 003193 436 TYLGYGMKMLLKRTEDLHLDELAGFKNVVHELDDEEGFARLRHLHVHNGPEILHILNSDGRVGTFPLLESLFLHNLINLE 515 (840)
Q Consensus 436 ~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~~~~L~ 515 (840)
..+++.-...+..|+.|.|+.|....-....| .++.+|++|+++++.---.+.+....+.++|+|++|.+.+ ++++
T Consensus 330 ~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af---~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~g-Nqlk 405 (873)
T KOG4194|consen 330 TRLDEGSFRVLSQLEELNLSHNSIDHLAEGAF---VGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTG-NQLK 405 (873)
T ss_pred ccCChhHHHHHHHhhhhcccccchHHHHhhHH---HHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecC-ceee
Confidence 88888877778888888888876432222233 6688888888888875444444444446788888888888 6777
Q ss_pred cccccccccCCCCcccCCccEEEEecCCCcccccchhHHhhcccccEEEEe
Q 003193 516 KVCDGKVRLNEDDKSFSNLRIIKVEGCHRVKHLFPFSLVKNLLQLQKVKVT 566 (840)
Q Consensus 516 ~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~i~ 566 (840)
.++...+ ..+++|++|++.+. -+.++.+. .+..+ .|++|.+.
T Consensus 406 ~I~krAf------sgl~~LE~LdL~~N-aiaSIq~n-AFe~m-~Lk~Lv~n 447 (873)
T KOG4194|consen 406 SIPKRAF------SGLEALEHLDLGDN-AIASIQPN-AFEPM-ELKELVMN 447 (873)
T ss_pred ecchhhh------ccCcccceecCCCC-cceeeccc-ccccc-hhhhhhhc
Confidence 7765443 36788888888774 35555332 23444 67777654
|
|
| >KOG0472 consensus Leucine-rich repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.6e-25 Score=220.91 Aligned_cols=455 Identities=19% Similarity=0.214 Sum_probs=311.5
Q ss_pred CCCcceeEeeccCccccCCCchhhcCCCCCcEEEcCCCCCCCCChhhcCCCCCCEEEccCCccCC-cccccCCCCCCEEe
Q 003193 230 GFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPSSLGCLINLRTLSLENCLVVD-VAIIGDLKKLEILS 308 (840)
Q Consensus 230 ~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~-~~~i~~L~~L~~L~ 308 (840)
.-..+..+.+++|..... .++. .++..|.+|++++|.+..+|++++.+..++.|+.++|.+.. |+.++.+.+|+.|+
T Consensus 43 ~qv~l~~lils~N~l~~l-~~dl-~nL~~l~vl~~~~n~l~~lp~aig~l~~l~~l~vs~n~ls~lp~~i~s~~~l~~l~ 120 (565)
T KOG0472|consen 43 EQVDLQKLILSHNDLEVL-REDL-KNLACLTVLNVHDNKLSQLPAAIGELEALKSLNVSHNKLSELPEQIGSLISLVKLD 120 (565)
T ss_pred hhcchhhhhhccCchhhc-cHhh-hcccceeEEEeccchhhhCCHHHHHHHHHHHhhcccchHhhccHHHhhhhhhhhhh
Confidence 345577788888887643 3343 78999999999999999999999999999999999999999 99999999999999
Q ss_pred ecCCCCcccChhhcCCCCCCEEEccCCCCCCccCcccccCCCCCcEEEccCCcccceecCCCCCCcccccCCCCCCeEEE
Q 003193 309 LKHSSIEQLPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGNSFTQWKVEGQSNASLGELKQLSRLTTLEV 388 (840)
Q Consensus 309 l~~~~l~~lp~~i~~L~~L~~L~L~~~~~l~~~p~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~l~~L~~L~l 388 (840)
.++|.+.++|++++.+..|..|+..+ +.+..+|++ ++.+.+|..|++.+|.... ...+.-+++.|++|+.
T Consensus 121 ~s~n~~~el~~~i~~~~~l~dl~~~~-N~i~slp~~-~~~~~~l~~l~~~~n~l~~--------l~~~~i~m~~L~~ld~ 190 (565)
T KOG0472|consen 121 CSSNELKELPDSIGRLLDLEDLDATN-NQISSLPED-MVNLSKLSKLDLEGNKLKA--------LPENHIAMKRLKHLDC 190 (565)
T ss_pred ccccceeecCchHHHHhhhhhhhccc-cccccCchH-HHHHHHHHHhhccccchhh--------CCHHHHHHHHHHhccc
Confidence 99999999999999999999999888 789999988 7899999999999887653 2244445788999999
Q ss_pred ecCCCCCCCCcc-cccCcceEEEEEcCcc--CCCCCccccceEEEeeCCCccchhhHHHHHhcccceeeccccccccccc
Q 003193 389 HIPDAQVMPQDL-VFVELERFRICIGDVW--SWSDGYETSKTLKLQLNNSTYLGYGMKMLLKRTEDLHLDELAGFKNVVH 465 (840)
Q Consensus 389 ~~~~~~~~~~~~-~~~~L~~L~l~~~~~~--~~~~~~~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~ 465 (840)
..|....+|.++ .+.+|+.|++..+.+. ..+++++.+..+++..+....+|..+...++++..|++++++ ++.+|.
T Consensus 191 ~~N~L~tlP~~lg~l~~L~~LyL~~Nki~~lPef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNk-lke~Pd 269 (565)
T KOG0472|consen 191 NSNLLETLPPELGGLESLELLYLRRNKIRFLPEFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNK-LKEVPD 269 (565)
T ss_pred chhhhhcCChhhcchhhhHHHHhhhcccccCCCCCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccc-cccCch
Confidence 999999999987 7888888888766643 257888999999999999888998888788999999999986 566787
Q ss_pred cccchhhcccccEEEeecCCCeEEEEeCCCccccccccceeecccccccccccccccccCCCCcccCCccEEEEecCCCc
Q 003193 466 ELDDEEGFARLRHLHVHNGPEILHILNSDGRVGTFPLLESLFLHNLINLEKVCDGKVRLNEDDKSFSNLRIIKVEGCHRV 545 (840)
Q Consensus 466 ~l~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L 545 (840)
++ ..+.+|.+|+++++. +..-+...+.+ .|+.|.+.+.| ++.+-...+.. ....-+..|+. .+ .|..+
T Consensus 270 e~---clLrsL~rLDlSNN~----is~Lp~sLgnl-hL~~L~leGNP-lrTiRr~ii~~-gT~~vLKyLrs-~~-~~dgl 337 (565)
T KOG0472|consen 270 EI---CLLRSLERLDLSNND----ISSLPYSLGNL-HLKFLALEGNP-LRTIRREIISK-GTQEVLKYLRS-KI-KDDGL 337 (565)
T ss_pred HH---HHhhhhhhhcccCCc----cccCCcccccc-eeeehhhcCCc-hHHHHHHHHcc-cHHHHHHHHHH-hh-ccCCC
Confidence 77 678999999999996 33334455677 88888888854 22221111100 00001111111 00 01000
Q ss_pred -------------ccccchhHHhhcccccEEEEecccccceeeccccccccccCCccccccccccceeecccCccccccc
Q 003193 546 -------------KHLFPFSLVKNLLQLQKVKVTDCTNLKLIVGKESENSAHKNGSISGVYFRKLHFLKLQHLPQLTSSG 612 (840)
Q Consensus 546 -------------~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~c~~L~~~~ 612 (840)
... +..-.....+.+.|++++ ..+..+|....... .-.-....++++. .+..+|
T Consensus 338 S~se~~~e~~~t~~~~-~~~~~~~~i~tkiL~~s~-~qlt~VPdEVfea~----------~~~~Vt~VnfskN-qL~elP 404 (565)
T KOG0472|consen 338 SQSEGGTETAMTLPSE-SFPDIYAIITTKILDVSD-KQLTLVPDEVFEAA----------KSEIVTSVNFSKN-QLCELP 404 (565)
T ss_pred CCCcccccccCCCCCC-cccchhhhhhhhhhcccc-cccccCCHHHHHHh----------hhcceEEEecccc-hHhhhh
Confidence 011 112234567788888877 45555554321100 0001122233221 222332
Q ss_pred CCCCCCCccCCCCCcccccCCCCCcccccccccccCCcce-EecccccchhhcccCCccccccCCCceEEEecccCCcce
Q 003193 613 FDLETPTNTQGSNPGIIAEGDPKDFTSLFNERVVFPSLKK-LKLSSINVEKIWLNSFSAIESWGKNLTKLTVEKCGRLKF 691 (840)
Q Consensus 613 ~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~l~~L~~-L~l~~c~l~~~~~~~~~~~~~~l~~L~~L~i~~C~~L~~ 691 (840)
.. +..+..+.+ +.++++.+..++. . ...+++|..|++++ +-+.+
T Consensus 405 k~-----------------------------L~~lkelvT~l~lsnn~isfv~~-~----l~~l~kLt~L~L~N-N~Ln~ 449 (565)
T KOG0472|consen 405 KR-----------------------------LVELKELVTDLVLSNNKISFVPL-E----LSQLQKLTFLDLSN-NLLND 449 (565)
T ss_pred hh-----------------------------hHHHHHHHHHHHhhcCccccchH-H----HHhhhcceeeeccc-chhhh
Confidence 22 223334433 4444444443322 2 24569999999954 56888
Q ss_pred eechhhHhhhcccceeeecccccchhhhccCcccccCccccccccccccccccCCcceeecCCCCccCCCcceEEeccC
Q 003193 692 LFSSSMVNGLEQLQQLDISHCKSMNEVINTRVGRDDNMIEMVFPKLVSLQLSHLPKLTRFGIGDSVEFPSLCQLQIACC 770 (840)
Q Consensus 692 l~~~~~~~~l~sL~~L~i~~C~~L~~i~~~~~~~~~~~~~~~l~sL~~L~i~~c~~L~~l~~~~~~~l~sL~~L~i~~C 770 (840)
+|.. +..+..|+.|+|+.. ....+ |+-.-. +..|+.+-. .-..+.+++..++.+...|..|++.+-
T Consensus 450 LP~e--~~~lv~Lq~LnlS~N-rFr~l---P~~~y~------lq~lEtlla-s~nqi~~vd~~~l~nm~nL~tLDL~nN 515 (565)
T KOG0472|consen 450 LPEE--MGSLVRLQTLNLSFN-RFRML---PECLYE------LQTLETLLA-SNNQIGSVDPSGLKNMRNLTTLDLQNN 515 (565)
T ss_pred cchh--hhhhhhhheeccccc-ccccc---hHHHhh------HHHHHHHHh-ccccccccChHHhhhhhhcceeccCCC
Confidence 8765 678888999999984 44444 543321 233444444 434688887766667778888887654
|
|
| >KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.5e-24 Score=235.67 Aligned_cols=81 Identities=15% Similarity=0.019 Sum_probs=43.5
Q ss_pred CccccceEEEeeCCCccchhhHHHHHhcccceeeccccccccccccccchhhcccccEEEeecCCCeEEEEeCCCccccc
Q 003193 421 GYETSKTLKLQLNNSTYLGYGMKMLLKRTEDLHLDELAGFKNVVHELDDEEGFARLRHLHVHNGPEILHILNSDGRVGTF 500 (840)
Q Consensus 421 ~~~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~ 500 (840)
.+.+++.++++.+....+|.|+.. +.+|+.+....+.. ..++..+ ....+|+.|.+..|. +++++ ....++
T Consensus 239 ~p~nl~~~dis~n~l~~lp~wi~~-~~nle~l~~n~N~l-~~lp~ri---~~~~~L~~l~~~~ne-l~yip---~~le~~ 309 (1081)
T KOG0618|consen 239 VPLNLQYLDISHNNLSNLPEWIGA-CANLEALNANHNRL-VALPLRI---SRITSLVSLSAAYNE-LEYIP---PFLEGL 309 (1081)
T ss_pred ccccceeeecchhhhhcchHHHHh-cccceEecccchhH-HhhHHHH---hhhhhHHHHHhhhhh-hhhCC---Cccccc
Confidence 345566666666666666666655 46666666665544 3333333 335556666655553 33332 223445
Q ss_pred cccceeeccc
Q 003193 501 PLLESLFLHN 510 (840)
Q Consensus 501 ~~L~~L~l~~ 510 (840)
.+|++|++..
T Consensus 310 ~sL~tLdL~~ 319 (1081)
T KOG0618|consen 310 KSLRTLDLQS 319 (1081)
T ss_pred ceeeeeeehh
Confidence 5566666655
|
|
| >KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.86 E-value=8.3e-24 Score=219.31 Aligned_cols=341 Identities=20% Similarity=0.236 Sum_probs=262.9
Q ss_pred hccCCCcEEEeccCCcccCCccc-CCCcceeEeeccCccccCCCchhhcCCCCCcEEEcCCCCCC--CCChhhcCCCCCC
Q 003193 207 KIDEAPTAISIPFRGIYELPERL-GFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFH--SLPSSLGCLINLR 283 (840)
Q Consensus 207 ~~~~~l~~L~l~~~~~~~l~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~--~lp~~l~~l~~L~ 283 (840)
..+..++.|.+....+..+|... .+.+|+.|.+.+|++. .+... +..++.||.+++..|++. .+|..|.++..|.
T Consensus 29 ~qMt~~~WLkLnrt~L~~vPeEL~~lqkLEHLs~~HN~L~-~vhGE-Ls~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt 106 (1255)
T KOG0444|consen 29 EQMTQMTWLKLNRTKLEQVPEELSRLQKLEHLSMAHNQLI-SVHGE-LSDLPRLRSVIVRDNNLKNSGIPTDIFRLKDLT 106 (1255)
T ss_pred HHhhheeEEEechhhhhhChHHHHHHhhhhhhhhhhhhhH-hhhhh-hccchhhHHHhhhccccccCCCCchhcccccce
Confidence 45677888888888888888776 6888999999888865 33333 377889999999999886 6899999999999
Q ss_pred EEEccCCccCC-cccccCCCCCCEEeecCCCCcccChh-hcCCCCCCEEEccCCCCCCccCcccccCCCCCcEEEccCCc
Q 003193 284 TLSLENCLVVD-VAIIGDLKKLEILSLKHSSIEQLPRE-IGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGNSF 361 (840)
Q Consensus 284 ~L~L~~~~~~~-~~~i~~L~~L~~L~l~~~~l~~lp~~-i~~L~~L~~L~L~~~~~l~~~p~~~l~~L~~L~~L~l~~~~ 361 (840)
+|||++|++.+ |..+..-+++-+|+|++|+|..+|.. +-+|+.|-.|||++ +.+..+|+. +..|.+|++|.+++|.
T Consensus 107 ~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~-NrLe~LPPQ-~RRL~~LqtL~Ls~NP 184 (1255)
T KOG0444|consen 107 ILDLSHNQLREVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSN-NRLEMLPPQ-IRRLSMLQTLKLSNNP 184 (1255)
T ss_pred eeecchhhhhhcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhcccc-chhhhcCHH-HHHHhhhhhhhcCCCh
Confidence 99999999998 99999999999999999999999966 47899999999998 789999998 7999999999999886
Q ss_pred ccceecCCCCCCcccccCCCCCCeEEEecCCC--CCCCCcc-cccCcceEEEEEcCc---cCCCCCccccceEEEeeCCC
Q 003193 362 TQWKVEGQSNASLGELKQLSRLTTLEVHIPDA--QVMPQDL-VFVELERFRICIGDV---WSWSDGYETSKTLKLQLNNS 435 (840)
Q Consensus 362 ~~~~~~~~~~~~l~~l~~l~~L~~L~l~~~~~--~~~~~~~-~~~~L~~L~l~~~~~---~~~~~~~~~l~~L~l~~~~~ 435 (840)
+.. ..+..+..++.|+.|.+++.+- ..+|..+ .+.+|..++++.+.. ++.+....+|+.|+|+++..
T Consensus 185 L~h-------fQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp~vPecly~l~~LrrLNLS~N~i 257 (1255)
T KOG0444|consen 185 LNH-------FQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLPIVPECLYKLRNLRRLNLSGNKI 257 (1255)
T ss_pred hhH-------HHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCCcchHHHhhhhhhheeccCcCce
Confidence 532 2345666777788888887653 3566665 778888888876664 34566778888888888888
Q ss_pred ccchhhHHHHHhcccceeeccccccccccccccchhhcccccEEEeecCCCeEEEEeCCCccccccccceeecccccccc
Q 003193 436 TYLGYGMKMLLKRTEDLHLDELAGFKNVVHELDDEEGFARLRHLHVHNGPEILHILNSDGRVGTFPLLESLFLHNLINLE 515 (840)
Q Consensus 436 ~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~~~~L~ 515 (840)
..+...... ..+|++|+++.+.. +.+|..+ ..++.|+.|.+.++.- . +.+.+...+.+.+|+.+...+ ++|+
T Consensus 258 teL~~~~~~-W~~lEtLNlSrNQL-t~LP~av---cKL~kL~kLy~n~NkL-~-FeGiPSGIGKL~~Levf~aan-N~LE 329 (1255)
T KOG0444|consen 258 TELNMTEGE-WENLETLNLSRNQL-TVLPDAV---CKLTKLTKLYANNNKL-T-FEGIPSGIGKLIQLEVFHAAN-NKLE 329 (1255)
T ss_pred eeeeccHHH-Hhhhhhhccccchh-ccchHHH---hhhHHHHHHHhccCcc-c-ccCCccchhhhhhhHHHHhhc-cccc
Confidence 777655554 46788888888754 4566666 6788888888877752 1 223344456777788888776 5666
Q ss_pred cccccccccCCCCcccCCccEEEEecCCCcccccchhHHhhcccccEEEEecccccceeec
Q 003193 516 KVCDGKVRLNEDDKSFSNLRIIKVEGCHRVKHLFPFSLVKNLLQLQKVKVTDCTNLKLIVG 576 (840)
Q Consensus 516 ~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~ 576 (840)
-.|.+ ...++.|+.|.+. |+.|..+| ..+.-++.|+.|+++..+++..-|.
T Consensus 330 lVPEg-------lcRC~kL~kL~L~-~NrLiTLP--eaIHlL~~l~vLDlreNpnLVMPPK 380 (1255)
T KOG0444|consen 330 LVPEG-------LCRCVKLQKLKLD-HNRLITLP--EAIHLLPDLKVLDLRENPNLVMPPK 380 (1255)
T ss_pred cCchh-------hhhhHHHHHhccc-ccceeech--hhhhhcCCcceeeccCCcCccCCCC
Confidence 65544 5568889999885 57777776 4467789999999999988876543
|
|
| >KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.1e-23 Score=216.33 Aligned_cols=329 Identities=19% Similarity=0.269 Sum_probs=265.4
Q ss_pred cCccchhhhh--hccCCCcEEEeccCCcccCCccc-CCCcceeEeeccCcccc-CCCchhhcCCCCCcEEEcCCCCCCCC
Q 003193 197 NVADLKEELD--KIDEAPTAISIPFRGIYELPERL-GFLKLKLFLFFTENLSL-QIPDPFFEGMTELRVLDLTGFRFHSL 272 (840)
Q Consensus 197 ~~~~~~~~~~--~~~~~l~~L~l~~~~~~~l~~~~-~~~~L~~L~l~~~~~~~-~~~~~~~~~l~~Lr~L~l~~~~~~~l 272 (840)
+...+..+|. ....++.||++..|++..+.... .++.||.+.+..|++.. -+|.++| +++.|.+|||++|++++.
T Consensus 40 nrt~L~~vPeEL~~lqkLEHLs~~HN~L~~vhGELs~Lp~LRsv~~R~N~LKnsGiP~diF-~l~dLt~lDLShNqL~Ev 118 (1255)
T KOG0444|consen 40 NRTKLEQVPEELSRLQKLEHLSMAHNQLISVHGELSDLPRLRSVIVRDNNLKNSGIPTDIF-RLKDLTILDLSHNQLREV 118 (1255)
T ss_pred chhhhhhChHHHHHHhhhhhhhhhhhhhHhhhhhhccchhhHHHhhhccccccCCCCchhc-ccccceeeecchhhhhhc
Confidence 3445566666 66889999999999997665544 79999999999988643 5888885 699999999999999999
Q ss_pred ChhhcCCCCCCEEEccCCccCC-cc-cccCCCCCCEEeecCCCCcccChhhcCCCCCCEEEccCCCCCCccCcccccCCC
Q 003193 273 PSSLGCLINLRTLSLENCLVVD-VA-IIGDLKKLEILSLKHSSIEQLPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLT 350 (840)
Q Consensus 273 p~~l~~l~~L~~L~L~~~~~~~-~~-~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~L~~~~~l~~~p~~~l~~L~ 350 (840)
|..+..-+++-+|+|++|+|.. |. -+-+|..|-+|||++|++..+|+.+..|.+|++|+|++ +.+..+.-..+..++
T Consensus 119 P~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe~LPPQ~RRL~~LqtL~Ls~-NPL~hfQLrQLPsmt 197 (1255)
T KOG0444|consen 119 PTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLEMLPPQIRRLSMLQTLKLSN-NPLNHFQLRQLPSMT 197 (1255)
T ss_pred chhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchhhhcCHHHHHHhhhhhhhcCC-ChhhHHHHhcCccch
Confidence 9999999999999999999998 64 45699999999999999999999999999999999999 455444333355678
Q ss_pred CCcEEEccCCcccceecCCCCCCcccccCCCCCCeEEEecCCCCCCCCcc-cccCcceEEEEEcCccCC---CCCccccc
Q 003193 351 RLEELYMGNSFTQWKVEGQSNASLGELKQLSRLTTLEVHIPDAQVMPQDL-VFVELERFRICIGDVWSW---SDGYETSK 426 (840)
Q Consensus 351 ~L~~L~l~~~~~~~~~~~~~~~~l~~l~~l~~L~~L~l~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~---~~~~~~l~ 426 (840)
+|++|.+++..-+. ......+..+.+|+.++++.|++..+|+-+ .+.+|++|+++.+.+... .+...+++
T Consensus 198 sL~vLhms~TqRTl------~N~Ptsld~l~NL~dvDlS~N~Lp~vPecly~l~~LrrLNLS~N~iteL~~~~~~W~~lE 271 (1255)
T KOG0444|consen 198 SLSVLHMSNTQRTL------DNIPTSLDDLHNLRDVDLSENNLPIVPECLYKLRNLRRLNLSGNKITELNMTEGEWENLE 271 (1255)
T ss_pred hhhhhhcccccchh------hcCCCchhhhhhhhhccccccCCCcchHHHhhhhhhheeccCcCceeeeeccHHHHhhhh
Confidence 89999998764321 123356777889999999999999999876 889999999987775542 34457899
Q ss_pred eEEEeeCCCccchhhHHHHHhcccceeeccccc-cccccccccchhhcccccEEEeecCCCeEEEEeCCCccccccccce
Q 003193 427 TLKLQLNNSTYLGYGMKMLLKRTEDLHLDELAG-FKNVVHELDDEEGFARLRHLHVHNGPEILHILNSDGRVGTFPLLES 505 (840)
Q Consensus 427 ~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~-~~~~~~~l~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~ 505 (840)
+|+++.+....+|..+.. +++|+.|.+.++.. .+.+|+.+ +.+.+|+.+...++. ++-+ +.....++.|+.
T Consensus 272 tLNlSrNQLt~LP~avcK-L~kL~kLy~n~NkL~FeGiPSGI---GKL~~Levf~aanN~-LElV---PEglcRC~kL~k 343 (1255)
T KOG0444|consen 272 TLNLSRNQLTVLPDAVCK-LTKLTKLYANNNKLTFEGIPSGI---GKLIQLEVFHAANNK-LELV---PEGLCRCVKLQK 343 (1255)
T ss_pred hhccccchhccchHHHhh-hHHHHHHHhccCcccccCCccch---hhhhhhHHHHhhccc-cccC---chhhhhhHHHHH
Confidence 999999999999998876 78999999988763 45667766 789999999988875 4444 334567889999
Q ss_pred eecccccccccccccccccCCCCcccCCccEEEEecCCCccccc
Q 003193 506 LFLHNLINLEKVCDGKVRLNEDDKSFSNLRIIKVEGCHRVKHLF 549 (840)
Q Consensus 506 L~l~~~~~L~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~ 549 (840)
|.+.. +.|-.+|.+ ...++.|+.|++...|+|..-|
T Consensus 344 L~L~~-NrLiTLPea-------IHlL~~l~vLDlreNpnLVMPP 379 (1255)
T KOG0444|consen 344 LKLDH-NRLITLPEA-------IHLLPDLKVLDLRENPNLVMPP 379 (1255)
T ss_pred hcccc-cceeechhh-------hhhcCCcceeeccCCcCccCCC
Confidence 99975 566666543 5678999999999999987543
|
|
| >KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.3e-23 Score=228.43 Aligned_cols=99 Identities=22% Similarity=0.290 Sum_probs=56.8
Q ss_pred CcEEEeccCCcccCCccc-CCCcceeEeeccCccccCCCchhhcCCCCCcEEEcCCCCCCCCChhhcCCCCCCEEEccCC
Q 003193 212 PTAISIPFRGIYELPERL-GFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPSSLGCLINLRTLSLENC 290 (840)
Q Consensus 212 l~~L~l~~~~~~~l~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~l~~l~~L~~L~L~~~ 290 (840)
+..|++++|.+..+|..+ .+.+|+.|.++.|.+. .+|.+. .++++|++|.|.+|.+..+|.++..+++|++|+++.|
T Consensus 47 L~~l~lsnn~~~~fp~~it~l~~L~~ln~s~n~i~-~vp~s~-~~~~~l~~lnL~~n~l~~lP~~~~~lknl~~LdlS~N 124 (1081)
T KOG0618|consen 47 LKSLDLSNNQISSFPIQITLLSHLRQLNLSRNYIR-SVPSSC-SNMRNLQYLNLKNNRLQSLPASISELKNLQYLDLSFN 124 (1081)
T ss_pred eEEeeccccccccCCchhhhHHHHhhcccchhhHh-hCchhh-hhhhcchhheeccchhhcCchhHHhhhcccccccchh
Confidence 555666666665555544 4556666666555543 344333 5556666666666666666666666666666666666
Q ss_pred ccCC-cccccCCCCCCEEeecCC
Q 003193 291 LVVD-VAIIGDLKKLEILSLKHS 312 (840)
Q Consensus 291 ~~~~-~~~i~~L~~L~~L~l~~~ 312 (840)
.+.. |..+..+..+..++.++|
T Consensus 125 ~f~~~Pl~i~~lt~~~~~~~s~N 147 (1081)
T KOG0618|consen 125 HFGPIPLVIEVLTAEEELAASNN 147 (1081)
T ss_pred ccCCCchhHHhhhHHHHHhhhcc
Confidence 6555 555555555555555555
|
|
| >PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals [] | Back alignment and domain information |
|---|
Probab=99.81 E-value=6.5e-21 Score=199.33 Aligned_cols=133 Identities=32% Similarity=0.521 Sum_probs=108.9
Q ss_pred CceEEccCCCHHHHHHHHHHHhCCC--CCCCchhhHHHHHHHHhCCCchhHHHHHHHhcCC-CHHHHHHHHHHhhcCCCC
Q 003193 7 SEDFLDWLLSNEEASHLFEKIVGHS--AKKSDFETIGVEIVAKCGGLPIAIKTIANALKNK-SPRIWKDAVNQLSNSNPR 83 (840)
Q Consensus 7 ~~~~~l~~L~~~~s~~Lf~~~a~~~--~~~~~~~~i~~~i~~~c~GlPLai~~~g~~L~~~-~~~~W~~~l~~l~~~~~~ 83 (840)
..+|++++|+++||++||++.|+.. ..++.+++++++|+++|+|+||||+++|+.|+.+ +..+|+++++++.+...
T Consensus 149 ~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLal~~~a~~l~~~~~~~~w~~~~~~l~~~~~- 227 (287)
T PF00931_consen 149 DKVIELEPLSEEEALELFKKRAGRKESESPEDLEDLAKEIVEKCGGLPLALKLIASYLRSKSTVDEWEEALEELENSLR- 227 (287)
T ss_dssp EEEEECSS--HHHHHHHHHHHHTSHS----TTSCTHHHHHHHHTTT-HHHHHHHHHHHHHHHSSSSHHHHHHHHHHCHT-
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-
Confidence 5689999999999999999999943 3566778999999999999999999999999754 78999999999887654
Q ss_pred Cccccccc-ccceeecccccCchhhhhHHHhccCCCCCCccCHHHHHHHHhhccccccc
Q 003193 84 KIQGMDAD-LSSIELSYEFLKCKEVKSLFQLCGLLKDGSRIAVDDLLRYVMGLRLLTNA 141 (840)
Q Consensus 84 ~~~~~~~~-~~~l~lSY~~L~~~~lk~cfl~~~~fp~~~~i~~~~li~~wia~gfi~~~ 141 (840)
+..+.... .+++.+||+.||++ +|+||+|||+||+++.|+++.++++|+|+|||+..
T Consensus 228 ~~~~~~~~~~~~l~~s~~~L~~~-~~~~f~~L~~f~~~~~i~~~~li~lW~~e~~i~~~ 285 (287)
T PF00931_consen 228 ESRDYDRSVFSALELSYDSLPDE-LRRCFLYLSIFPEGVPIPRERLIRLWVAEGFISSK 285 (287)
T ss_dssp CSSGSCHHHHHHHHHHHHSSHTC-CHHHHHHGGGSGTTS-EEHHHHHHHHTT-HHTC--
T ss_pred ccccccccccccceechhcCCcc-HHHHHhhCcCCCCCceECHHHHHHHHHHCCCCccc
Confidence 22222333 89999999999997 99999999999999999999999999999999754
|
This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A. |
| >KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.59 E-value=2.1e-17 Score=144.63 Aligned_cols=151 Identities=23% Similarity=0.378 Sum_probs=101.0
Q ss_pred ccCCCcEEEeccCCcccCCccc-CCCcceeEeeccCccccCCCchhhcCCCCCcEEEcCCCCCCCCChhhcCCCCCCEEE
Q 003193 208 IDEAPTAISIPFRGIYELPERL-GFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPSSLGCLINLRTLS 286 (840)
Q Consensus 208 ~~~~l~~L~l~~~~~~~l~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~l~~l~~L~~L~ 286 (840)
..+.+++|.++.|.+..+|+.+ .+.+|++|++++|++. .+|.++ +.+++||.|++.-|++..+|..|+.++.|++||
T Consensus 31 ~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie-~lp~~i-ssl~klr~lnvgmnrl~~lprgfgs~p~levld 108 (264)
T KOG0617|consen 31 NMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIE-ELPTSI-SSLPKLRILNVGMNRLNILPRGFGSFPALEVLD 108 (264)
T ss_pred chhhhhhhhcccCceeecCCcHHHhhhhhhhhcccchhh-hcChhh-hhchhhhheecchhhhhcCccccCCCchhhhhh
Confidence 3556666777777776666655 5667777777666654 556555 666777777777666666677777777777777
Q ss_pred ccCCccCC---cccccCCCCCCEEeecCCCCcccChhhcCCCCCCEEEccCCCCCCccCcccccCCCCCcEEEccCCcc
Q 003193 287 LENCLVVD---VAIIGDLKKLEILSLKHSSIEQLPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGNSFT 362 (840)
Q Consensus 287 L~~~~~~~---~~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~L~~~~~l~~~p~~~l~~L~~L~~L~l~~~~~ 362 (840)
|++|++.+ |..|..++.|+.|+++.|.+.-+|..++++++||.|.+.. +.+-.+|.+ ++.++.|++|++.+|..
T Consensus 109 ltynnl~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrd-ndll~lpke-ig~lt~lrelhiqgnrl 185 (264)
T KOG0617|consen 109 LTYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRD-NDLLSLPKE-IGDLTRLRELHIQGNRL 185 (264)
T ss_pred ccccccccccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeecc-CchhhCcHH-HHHHHHHHHHhccccee
Confidence 77666655 6666666667777777776666777777777777777666 455566665 56666666666666654
|
|
| >KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.59 E-value=2.3e-17 Score=144.47 Aligned_cols=167 Identities=24% Similarity=0.381 Sum_probs=148.8
Q ss_pred cccCCcccCCCcceeEeeccCccccCCCchhhcCCCCCcEEEcCCCCCCCCChhhcCCCCCCEEEccCCccCC-cccccC
Q 003193 222 IYELPERLGFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPSSLGCLINLRTLSLENCLVVD-VAIIGD 300 (840)
Q Consensus 222 ~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~-~~~i~~ 300 (840)
+..++..+.+.++..|.++.|.++ .+|+.+ ..+++|++|++.+|+++++|.+++.++.||.|++.-|.+.. |..||.
T Consensus 23 f~~~~gLf~~s~ITrLtLSHNKl~-~vppni-a~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~~lprgfgs 100 (264)
T KOG0617|consen 23 FEELPGLFNMSNITRLTLSHNKLT-VVPPNI-AELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLNILPRGFGS 100 (264)
T ss_pred HhhcccccchhhhhhhhcccCcee-ecCCcH-HHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhhhcCccccCC
Confidence 456677778999999999999987 466666 78999999999999999999999999999999999999888 999999
Q ss_pred CCCCCEEeecCCCCc--ccChhhcCCCCCCEEEccCCCCCCccCcccccCCCCCcEEEccCCcccceecCCCCCCccccc
Q 003193 301 LKKLEILSLKHSSIE--QLPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGNSFTQWKVEGQSNASLGELK 378 (840)
Q Consensus 301 L~~L~~L~l~~~~l~--~lp~~i~~L~~L~~L~L~~~~~l~~~p~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~l~~l~ 378 (840)
++-|+.||+.+|++. .+|..+..++.|+.|++++ +.+..+|+. ++++++||.|.+.+|... ....+++
T Consensus 101 ~p~levldltynnl~e~~lpgnff~m~tlralyl~d-ndfe~lp~d-vg~lt~lqil~lrdndll--------~lpkeig 170 (264)
T KOG0617|consen 101 FPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGD-NDFEILPPD-VGKLTNLQILSLRDNDLL--------SLPKEIG 170 (264)
T ss_pred CchhhhhhccccccccccCCcchhHHHHHHHHHhcC-CCcccCChh-hhhhcceeEEeeccCchh--------hCcHHHH
Confidence 999999999999877 7899999999999999999 788999998 899999999999988654 2447888
Q ss_pred CCCCCCeEEEecCCCCCCCCcc
Q 003193 379 QLSRLTTLEVHIPDAQVMPQDL 400 (840)
Q Consensus 379 ~l~~L~~L~l~~~~~~~~~~~~ 400 (840)
.+..|++|++.+|..+.+|..+
T Consensus 171 ~lt~lrelhiqgnrl~vlppel 192 (264)
T KOG0617|consen 171 DLTRLRELHIQGNRLTVLPPEL 192 (264)
T ss_pred HHHHHHHHhcccceeeecChhh
Confidence 8999999999999998888754
|
|
| >KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.59 E-value=3e-17 Score=162.71 Aligned_cols=141 Identities=23% Similarity=0.324 Sum_probs=101.6
Q ss_pred cCccchhhhhhccCCCcEEEeccCCcccCCcccCCCcceeEeeccCccccCCCchhhcCCCCCcEEEcCCCCCCCC-Chh
Q 003193 197 NVADLKEELDKIDEAPTAISIPFRGIYELPERLGFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSL-PSS 275 (840)
Q Consensus 197 ~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~l-p~~ 275 (840)
.+..+.++|...+.....+.+..|.|. .+|+..|+.+++||.|||+.|.|+.+ |+.
T Consensus 54 r~~GL~eVP~~LP~~tveirLdqN~I~-----------------------~iP~~aF~~l~~LRrLdLS~N~Is~I~p~A 110 (498)
T KOG4237|consen 54 RGKGLTEVPANLPPETVEIRLDQNQIS-----------------------SIPPGAFKTLHRLRRLDLSKNNISFIAPDA 110 (498)
T ss_pred cCCCcccCcccCCCcceEEEeccCCcc-----------------------cCChhhccchhhhceecccccchhhcChHh
Confidence 445555666555555666666555554 45666678888888888888888866 777
Q ss_pred hcCCCCCCEEEccC-CccCC-c-ccccCCCCCCEEeecCCCCcccC-hhhcCCCCCCEEEccCCCCCCccCcccccCCCC
Q 003193 276 LGCLINLRTLSLEN-CLVVD-V-AIIGDLKKLEILSLKHSSIEQLP-REIGQLTCLKLLDLSNCSKLKEIRPNVISNLTR 351 (840)
Q Consensus 276 l~~l~~L~~L~L~~-~~~~~-~-~~i~~L~~L~~L~l~~~~l~~lp-~~i~~L~~L~~L~L~~~~~l~~~p~~~l~~L~~ 351 (840)
|.++..|-.|-+.+ |+|++ | ..|++|..|+.|.+.-|++.-++ ..+..|++|..|.+.+ +.+..++.+.+..+..
T Consensus 111 F~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyD-n~~q~i~~~tf~~l~~ 189 (498)
T KOG4237|consen 111 FKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYD-NKIQSICKGTFQGLAA 189 (498)
T ss_pred hhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccc-hhhhhhccccccchhc
Confidence 88888776666655 67777 3 56778888888888887777554 4568888888888888 6788888777788888
Q ss_pred CcEEEccCCc
Q 003193 352 LEELYMGNSF 361 (840)
Q Consensus 352 L~~L~l~~~~ 361 (840)
++++.+..|.
T Consensus 190 i~tlhlA~np 199 (498)
T KOG4237|consen 190 IKTLHLAQNP 199 (498)
T ss_pred cchHhhhcCc
Confidence 8888776654
|
|
| >PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional | Back alignment and domain information |
|---|
Probab=99.55 E-value=9e-14 Score=157.82 Aligned_cols=244 Identities=18% Similarity=0.087 Sum_probs=124.9
Q ss_pred cchhhhhhccCCCcEEEeccCCcccCCcccCCCcceeEeeccCccccCCCchhhcCCCCCcEEEcCCCCCCCCChhhcCC
Q 003193 200 DLKEELDKIDEAPTAISIPFRGIYELPERLGFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPSSLGCL 279 (840)
Q Consensus 200 ~~~~~~~~~~~~l~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~l~~l 279 (840)
.+..+|.....+++.|++..|++..+|.. .++|++|++++|.+. .+|. ..++|+.|++++|.++.+|...
T Consensus 212 ~LtsLP~~l~~~L~~L~L~~N~Lt~LP~l--p~~Lk~LdLs~N~Lt-sLP~----lp~sL~~L~Ls~N~L~~Lp~lp--- 281 (788)
T PRK15387 212 GLTTLPDCLPAHITTLVIPDNNLTSLPAL--PPELRTLEVSGNQLT-SLPV----LPPGLLELSIFSNPLTHLPALP--- 281 (788)
T ss_pred CCCcCCcchhcCCCEEEccCCcCCCCCCC--CCCCcEEEecCCccC-cccC----cccccceeeccCCchhhhhhch---
Confidence 34445554455667777777766666643 456677777666654 3442 2346666677776666665422
Q ss_pred CCCCEEEccCCccCC-cccccCCCCCCEEeecCCCCcccChhhcCCCCCCEEEccCCCCCCccCcccccCCCCCcEEEcc
Q 003193 280 INLRTLSLENCLVVD-VAIIGDLKKLEILSLKHSSIEQLPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMG 358 (840)
Q Consensus 280 ~~L~~L~L~~~~~~~-~~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~L~~~~~l~~~p~~~l~~L~~L~~L~l~ 358 (840)
.+|+.|++++|.++. |. .+++|++|++++|+++.+|... .+|+.|++++ +.+..+|. + ..+|++|+++
T Consensus 282 ~~L~~L~Ls~N~Lt~LP~---~p~~L~~LdLS~N~L~~Lp~lp---~~L~~L~Ls~-N~L~~LP~--l--p~~Lq~LdLS 350 (788)
T PRK15387 282 SGLCKLWIFGNQLTSLPV---LPPGLQELSVSDNQLASLPALP---SELCKLWAYN-NQLTSLPT--L--PSGLQELSVS 350 (788)
T ss_pred hhcCEEECcCCccccccc---cccccceeECCCCccccCCCCc---cccccccccc-Cccccccc--c--ccccceEecC
Confidence 456666666666665 32 2355667777776666665422 3455566666 45555553 1 1456666666
Q ss_pred CCcccceecCCCCCCcccccCCCCCCeEEEecCCCCCCCCcccccCcceEEEEEcCccCCCCCccccceEEEeeCCCccc
Q 003193 359 NSFTQWKVEGQSNASLGELKQLSRLTTLEVHIPDAQVMPQDLVFVELERFRICIGDVWSWSDGYETSKTLKLQLNNSTYL 438 (840)
Q Consensus 359 ~~~~~~~~~~~~~~~l~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~l~~~~~~~~ 438 (840)
+|.+.. ++ .+ ..+|+.|+++.|.+..+|.. ..+|+.|++..+.+.........++.|+++++....+
T Consensus 351 ~N~Ls~-LP--------~l--p~~L~~L~Ls~N~L~~LP~l--~~~L~~LdLs~N~Lt~LP~l~s~L~~LdLS~N~LssI 417 (788)
T PRK15387 351 DNQLAS-LP--------TL--PSELYKLWAYNNRLTSLPAL--PSGLKELIVSGNRLTSLPVLPSELKELMVSGNRLTSL 417 (788)
T ss_pred CCccCC-CC--------CC--CcccceehhhccccccCccc--ccccceEEecCCcccCCCCcccCCCEEEccCCcCCCC
Confidence 665432 11 01 13455566666665555432 2345555554433222212223444444444444444
Q ss_pred hhhHHHHHhcccceeeccccccccccccccchhhcccccEEEeecCC
Q 003193 439 GYGMKMLLKRTEDLHLDELAGFKNVVHELDDEEGFARLRHLHVHNGP 485 (840)
Q Consensus 439 ~~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~~~~l~~L~~L~l~~~~ 485 (840)
|.. +.+|+.|++++|.. +.+|..+ ..+++|+.|++++|+
T Consensus 418 P~l----~~~L~~L~Ls~NqL-t~LP~sl---~~L~~L~~LdLs~N~ 456 (788)
T PRK15387 418 PML----PSGLLSLSVYRNQL-TRLPESL---IHLSSETTVNLEGNP 456 (788)
T ss_pred Ccc----hhhhhhhhhccCcc-cccChHH---hhccCCCeEECCCCC
Confidence 321 12344444444432 2333333 344445555554443
|
|
| >PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.3e-13 Score=156.67 Aligned_cols=255 Identities=20% Similarity=0.166 Sum_probs=174.9
Q ss_pred CCCcEEEeccCCcccCCcccCCCcceeEeeccCccccCCCchhhcCCCCCcEEEcCCCCCCCCChhhcCCCCCCEEEccC
Q 003193 210 EAPTAISIPFRGIYELPERLGFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPSSLGCLINLRTLSLEN 289 (840)
Q Consensus 210 ~~l~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~l~~l~~L~~L~L~~ 289 (840)
..-..|+++.+.+..+|..+. ++|+.|.+.+|++. .+|. .+++|++|++++|.++.+|.. .++|+.|++++
T Consensus 201 ~~~~~LdLs~~~LtsLP~~l~-~~L~~L~L~~N~Lt-~LP~----lp~~Lk~LdLs~N~LtsLP~l---p~sL~~L~Ls~ 271 (788)
T PRK15387 201 NGNAVLNVGESGLTTLPDCLP-AHITTLVIPDNNLT-SLPA----LPPELRTLEVSGNQLTSLPVL---PPGLLELSIFS 271 (788)
T ss_pred CCCcEEEcCCCCCCcCCcchh-cCCCEEEccCCcCC-CCCC----CCCCCcEEEecCCccCcccCc---ccccceeeccC
Confidence 345678999999998988663 48999999998876 4664 367899999999999999853 46899999999
Q ss_pred CccCC-cccccCCCCCCEEeecCCCCcccChhhcCCCCCCEEEccCCCCCCccCcccccCCCCCcEEEccCCcccceecC
Q 003193 290 CLVVD-VAIIGDLKKLEILSLKHSSIEQLPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGNSFTQWKVEG 368 (840)
Q Consensus 290 ~~~~~-~~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~L~~~~~l~~~p~~~l~~L~~L~~L~l~~~~~~~~~~~ 368 (840)
|.+.. |.. ..+|+.|++++|+++.+|.. +++|+.|++++ +.+..+|.. ..+|+.|++++|.+.. ++
T Consensus 272 N~L~~Lp~l---p~~L~~L~Ls~N~Lt~LP~~---p~~L~~LdLS~-N~L~~Lp~l----p~~L~~L~Ls~N~L~~-LP- 338 (788)
T PRK15387 272 NPLTHLPAL---PSGLCKLWIFGNQLTSLPVL---PPGLQELSVSD-NQLASLPAL----PSELCKLWAYNNQLTS-LP- 338 (788)
T ss_pred Cchhhhhhc---hhhcCEEECcCCcccccccc---ccccceeECCC-CccccCCCC----cccccccccccCcccc-cc-
Confidence 99887 442 35788999999999999863 57899999999 678888752 2467788888886542 11
Q ss_pred CCCCCcccccCCCCCCeEEEecCCCCCCCCcccccCcceEEEEEcCccCCCCCccccceEEEeeCCCccchhhHHHHHhc
Q 003193 369 QSNASLGELKQLSRLTTLEVHIPDAQVMPQDLVFVELERFRICIGDVWSWSDGYETSKTLKLQLNNSTYLGYGMKMLLKR 448 (840)
Q Consensus 369 ~~~~~l~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~l~~ 448 (840)
.+ ..+|+.|++++|.+..+|.. ..+|+.|.+ +.+....+|.. .++
T Consensus 339 -------~l--p~~Lq~LdLS~N~Ls~LP~l--p~~L~~L~L--------------------s~N~L~~LP~l----~~~ 383 (788)
T PRK15387 339 -------TL--PSGLQELSVSDNQLASLPTL--PSELYKLWA--------------------YNNRLTSLPAL----PSG 383 (788)
T ss_pred -------cc--ccccceEecCCCccCCCCCC--Ccccceehh--------------------hccccccCccc----ccc
Confidence 11 14789999999988877653 234444443 33333333321 246
Q ss_pred ccceeeccccccccccccccchhhcccccEEEeecCCCeEEEEeCCCccccccccceeecccccccccccccccccCCCC
Q 003193 449 TEDLHLDELAGFKNVVHELDDEEGFARLRHLHVHNGPEILHILNSDGRVGTFPLLESLFLHNLINLEKVCDGKVRLNEDD 528 (840)
Q Consensus 449 L~~L~L~~~~~~~~~~~~l~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~ 528 (840)
|+.|++++|... .+|. ..++|+.|++++|. +..++. .+.+|+.|++++ ++++.++.. .
T Consensus 384 L~~LdLs~N~Lt-~LP~------l~s~L~~LdLS~N~-LssIP~------l~~~L~~L~Ls~-NqLt~LP~s-------l 441 (788)
T PRK15387 384 LKELIVSGNRLT-SLPV------LPSELKELMVSGNR-LTSLPM------LPSGLLSLSVYR-NQLTRLPES-------L 441 (788)
T ss_pred cceEEecCCccc-CCCC------cccCCCEEEccCCc-CCCCCc------chhhhhhhhhcc-CcccccChH-------H
Confidence 777777776432 3332 23567888888775 333221 234677777776 455555432 3
Q ss_pred cccCCccEEEEecCC
Q 003193 529 KSFSNLRIIKVEGCH 543 (840)
Q Consensus 529 ~~~~~L~~L~l~~c~ 543 (840)
..+++|+.|++++++
T Consensus 442 ~~L~~L~~LdLs~N~ 456 (788)
T PRK15387 442 IHLSSETTVNLEGNP 456 (788)
T ss_pred hhccCCCeEECCCCC
Confidence 467888888888764
|
|
| >PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional | Back alignment and domain information |
|---|
Probab=99.48 E-value=2.7e-13 Score=155.18 Aligned_cols=243 Identities=16% Similarity=0.212 Sum_probs=110.4
Q ss_pred cEEEeccCCcccCCcccCCCcceeEeeccCccccCCCchhhcCCCCCcEEEcCCCCCCCCChhhcCCCCCCEEEccCCcc
Q 003193 213 TAISIPFRGIYELPERLGFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPSSLGCLINLRTLSLENCLV 292 (840)
Q Consensus 213 ~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~l~~l~~L~~L~L~~~~~ 292 (840)
..|.++++.+..+|..+ .++++.|++++|.+. .+|..++ .+|++|++++|.++.+|..+. .+|+.|++++|.+
T Consensus 181 ~~L~L~~~~LtsLP~~I-p~~L~~L~Ls~N~Lt-sLP~~l~---~nL~~L~Ls~N~LtsLP~~l~--~~L~~L~Ls~N~L 253 (754)
T PRK15370 181 TELRLKILGLTTIPACI-PEQITTLILDNNELK-SLPENLQ---GNIKTLYANSNQLTSIPATLP--DTIQEMELSINRI 253 (754)
T ss_pred eEEEeCCCCcCcCCccc-ccCCcEEEecCCCCC-cCChhhc---cCCCEEECCCCccccCChhhh--ccccEEECcCCcc
Confidence 44445444444444332 134555555555443 3444332 245555555555555554332 2455555555554
Q ss_pred CC-cccccCCCCCCEEeecCCCCcccChhhcCCCCCCEEEccCCCCCCccCcccccCCCCCcEEEccCCcccceecCCCC
Q 003193 293 VD-VAIIGDLKKLEILSLKHSSIEQLPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGNSFTQWKVEGQSN 371 (840)
Q Consensus 293 ~~-~~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~L~~~~~l~~~p~~~l~~L~~L~~L~l~~~~~~~~~~~~~~ 371 (840)
.. |..+. .+|++|++++|+++.+|..+. .+|++|++++ +.+..+|.. +. ++|+.|++++|.+.. .+
T Consensus 254 ~~LP~~l~--s~L~~L~Ls~N~L~~LP~~l~--~sL~~L~Ls~-N~Lt~LP~~-lp--~sL~~L~Ls~N~Lt~-LP---- 320 (754)
T PRK15370 254 TELPERLP--SALQSLDLFHNKISCLPENLP--EELRYLSVYD-NSIRTLPAH-LP--SGITHLNVQSNSLTA-LP---- 320 (754)
T ss_pred CcCChhHh--CCCCEEECcCCccCccccccC--CCCcEEECCC-CccccCccc-ch--hhHHHHHhcCCcccc-CC----
Confidence 44 33332 245555555555555554332 3455555555 344444432 11 244455555443321 00
Q ss_pred CCcccccCCCCCCeEEEecCCCCCCCCcccccCcceEEEEEcCccCCC-CCccccceEEEeeCCCccchhhHHHHHhccc
Q 003193 372 ASLGELKQLSRLTTLEVHIPDAQVMPQDLVFVELERFRICIGDVWSWS-DGYETSKTLKLQLNNSTYLGYGMKMLLKRTE 450 (840)
Q Consensus 372 ~~l~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~l~~L~l~~~~~~~~~~~~~~~l~~L~ 450 (840)
..+ .++|+.|+++.|.+..+|..+. ++|+.|++..+...... ...+.|+.|+++++....+|..+. ..|+
T Consensus 321 ---~~l--~~sL~~L~Ls~N~Lt~LP~~l~-~sL~~L~Ls~N~L~~LP~~lp~~L~~LdLs~N~Lt~LP~~l~---~sL~ 391 (754)
T PRK15370 321 ---ETL--PPGLKTLEAGENALTSLPASLP-PELQVLDVSKNQITVLPETLPPTITTLDVSRNALTNLPENLP---AALQ 391 (754)
T ss_pred ---ccc--cccceeccccCCccccCChhhc-CcccEEECCCCCCCcCChhhcCCcCEEECCCCcCCCCCHhHH---HHHH
Confidence 000 1244455555544444443221 33444444333211100 012356666666666666665543 3567
Q ss_pred ceeeccccccccccccccch-hhcccccEEEeecCC
Q 003193 451 DLHLDELAGFKNVVHELDDE-EGFARLRHLHVHNGP 485 (840)
Q Consensus 451 ~L~L~~~~~~~~~~~~l~~~-~~l~~L~~L~l~~~~ 485 (840)
.|++++|.. ..+|..+... ..++++..|.+.+++
T Consensus 392 ~LdLs~N~L-~~LP~sl~~~~~~~~~l~~L~L~~Np 426 (754)
T PRK15370 392 IMQASRNNL-VRLPESLPHFRGEGPQPTRIIVEYNP 426 (754)
T ss_pred HHhhccCCc-ccCchhHHHHhhcCCCccEEEeeCCC
Confidence 777777653 3444433110 234666777777765
|
|
| >PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional | Back alignment and domain information |
|---|
Probab=99.44 E-value=3.6e-13 Score=154.12 Aligned_cols=245 Identities=18% Similarity=0.212 Sum_probs=184.3
Q ss_pred cchhhhhhccCCCcEEEeccCCcccCCcccCCCcceeEeeccCccccCCCchhhcCCCCCcEEEcCCCCCCCCChhhcCC
Q 003193 200 DLKEELDKIDEAPTAISIPFRGIYELPERLGFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPSSLGCL 279 (840)
Q Consensus 200 ~~~~~~~~~~~~l~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~l~~l 279 (840)
.+..+|...++.++.|++++|.+..+|... .++|++|++++|.+. .+|..+. .+|+.|++++|.+..+|..+.
T Consensus 189 ~LtsLP~~Ip~~L~~L~Ls~N~LtsLP~~l-~~nL~~L~Ls~N~Lt-sLP~~l~---~~L~~L~Ls~N~L~~LP~~l~-- 261 (754)
T PRK15370 189 GLTTIPACIPEQITTLILDNNELKSLPENL-QGNIKTLYANSNQLT-SIPATLP---DTIQEMELSINRITELPERLP-- 261 (754)
T ss_pred CcCcCCcccccCCcEEEecCCCCCcCChhh-ccCCCEEECCCCccc-cCChhhh---ccccEEECcCCccCcCChhHh--
Confidence 455566666788999999999999888765 368999999998876 6776552 479999999999999998775
Q ss_pred CCCCEEEccCCccCC-cccccCCCCCCEEeecCCCCcccChhhcCCCCCCEEEccCCCCCCccCcccccCCCCCcEEEcc
Q 003193 280 INLRTLSLENCLVVD-VAIIGDLKKLEILSLKHSSIEQLPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMG 358 (840)
Q Consensus 280 ~~L~~L~L~~~~~~~-~~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~L~~~~~l~~~p~~~l~~L~~L~~L~l~ 358 (840)
.+|++|++++|.+.. |..+. .+|++|++++|+++.+|..+. .+|++|++++ +.+..+|.. + .++|+.|+++
T Consensus 262 s~L~~L~Ls~N~L~~LP~~l~--~sL~~L~Ls~N~Lt~LP~~lp--~sL~~L~Ls~-N~Lt~LP~~-l--~~sL~~L~Ls 333 (754)
T PRK15370 262 SALQSLDLFHNKISCLPENLP--EELRYLSVYDNSIRTLPAHLP--SGITHLNVQS-NSLTALPET-L--PPGLKTLEAG 333 (754)
T ss_pred CCCCEEECcCCccCccccccC--CCCcEEECCCCccccCcccch--hhHHHHHhcC-CccccCCcc-c--cccceecccc
Confidence 589999999999888 66554 589999999999999987654 4789999998 677788764 2 3689999999
Q ss_pred CCcccceecCCCCCCcccccCCCCCCeEEEecCCCCCCCCcccccCcceEEEEEcCccCCCC-CccccceEEEeeCCCcc
Q 003193 359 NSFTQWKVEGQSNASLGELKQLSRLTTLEVHIPDAQVMPQDLVFVELERFRICIGDVWSWSD-GYETSKTLKLQLNNSTY 437 (840)
Q Consensus 359 ~~~~~~~~~~~~~~~l~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~l~~L~l~~~~~~~ 437 (840)
+|.+.. ++ ..+ .++|+.|++++|.+..+|..+ .++|+.|++..+....... ....++.|+++.+....
T Consensus 334 ~N~Lt~-LP-------~~l--~~sL~~L~Ls~N~L~~LP~~l-p~~L~~LdLs~N~Lt~LP~~l~~sL~~LdLs~N~L~~ 402 (754)
T PRK15370 334 ENALTS-LP-------ASL--PPELQVLDVSKNQITVLPETL-PPTITTLDVSRNALTNLPENLPAALQIMQASRNNLVR 402 (754)
T ss_pred CCcccc-CC-------hhh--cCcccEEECCCCCCCcCChhh-cCCcCEEECCCCcCCCCCHhHHHHHHHHhhccCCccc
Confidence 887642 22 122 257999999999888777654 3688899887766443221 12368888999988888
Q ss_pred chhhHHHH---HhcccceeeccccccccccccccchhhcccccEE
Q 003193 438 LGYGMKML---LKRTEDLHLDELAGFKNVVHELDDEEGFARLRHL 479 (840)
Q Consensus 438 ~~~~~~~~---l~~L~~L~L~~~~~~~~~~~~l~~~~~l~~L~~L 479 (840)
+|..+... .+++..|++.+|.... ..+++|+.|
T Consensus 403 LP~sl~~~~~~~~~l~~L~L~~Npls~---------~tl~~L~~L 438 (754)
T PRK15370 403 LPESLPHFRGEGPQPTRIIVEYNPFSE---------RTIQNMQRL 438 (754)
T ss_pred CchhHHHHhhcCCCccEEEeeCCCccH---------HHHHHHHHh
Confidence 88776654 3567888888876431 445556555
|
|
| >KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.36 E-value=9.1e-13 Score=153.22 Aligned_cols=126 Identities=22% Similarity=0.308 Sum_probs=97.5
Q ss_pred ccCCCcEEEeccCC--cccCCcc--cCCCcceeEeeccCccccCCCchhhcCCCCCcEEEcCCCCCCCCChhhcCCCCCC
Q 003193 208 IDEAPTAISIPFRG--IYELPER--LGFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPSSLGCLINLR 283 (840)
Q Consensus 208 ~~~~l~~L~l~~~~--~~~l~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~l~~l~~L~ 283 (840)
...+++.|-+..|. +..++.. ..++.||+|++++|...+.+|..+ +++-+||+|+++++.++.+|.++++|+.|.
T Consensus 543 ~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I-~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~ 621 (889)
T KOG4658|consen 543 ENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSI-GELVHLRYLDLSDTGISHLPSGLGNLKKLI 621 (889)
T ss_pred CCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHH-hhhhhhhcccccCCCccccchHHHHHHhhh
Confidence 34478999999886 5556553 379999999999998888999887 899999999999999999999999999999
Q ss_pred EEEccCCccCC--cccccCCCCCCEEeecCCCCccc---ChhhcCCCCCCEEEccC
Q 003193 284 TLSLENCLVVD--VAIIGDLKKLEILSLKHSSIEQL---PREIGQLTCLKLLDLSN 334 (840)
Q Consensus 284 ~L~L~~~~~~~--~~~i~~L~~L~~L~l~~~~l~~l---p~~i~~L~~L~~L~L~~ 334 (840)
+|++..+.... +.....|++||+|.+.......- -..+.+|.+|+.+....
T Consensus 622 ~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~ 677 (889)
T KOG4658|consen 622 YLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITI 677 (889)
T ss_pred eeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeec
Confidence 99999887544 45556699999999977642211 12334455555554433
|
|
| >KOG4341 consensus F-box protein containing LRR [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.06 E-value=1.2e-12 Score=131.52 Aligned_cols=142 Identities=18% Similarity=0.248 Sum_probs=82.1
Q ss_pred cccCCcceEecccc-cchhhcccCCccccccCCCceEEEecccCCcceeechhhHhhhcccceeeecccccchhhhccCc
Q 003193 645 VVFPSLKKLKLSSI-NVEKIWLNSFSAIESWGKNLTKLTVEKCGRLKFLFSSSMVNGLEQLQQLDISHCKSMNEVINTRV 723 (840)
Q Consensus 645 ~~l~~L~~L~l~~c-~l~~~~~~~~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~~l~sL~~L~i~~C~~L~~i~~~~~ 723 (840)
++.++|+.|.+..| .+++..-.. ...+++.|+.|++.+|-..++-...+...+++.|+.|.++.|..+++-
T Consensus 317 ~~~~~L~~l~l~~c~~fsd~~ft~---l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~----- 388 (483)
T KOG4341|consen 317 QHCHNLQVLELSGCQQFSDRGFTM---LGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDE----- 388 (483)
T ss_pred cCCCceEEEeccccchhhhhhhhh---hhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhh-----
Confidence 44567777777777 444432222 235667777777777766655423344567777888888877766532
Q ss_pred cccc-CccccccccccccccccCCcceeecCCCCccCCCcceEEeccCCCcceeecccccccccccccccccCcccc
Q 003193 724 GRDD-NMIEMVFPKLVSLQLSHLPKLTRFGIGDSVEFPSLCQLQIACCPNLKIFICSCTEEMSSEKNIHTTQTQPLF 799 (840)
Q Consensus 724 ~~~~-~~~~~~l~sL~~L~i~~c~~L~~l~~~~~~~l~sL~~L~i~~C~~L~~l~~~~~~~~~~~~~i~~~~~~~l~ 799 (840)
|... .........|..+.+.+||.++.--...+..+++|+.+++.+|....+-+.. .-..|+|.+.+-.+|
T Consensus 389 gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vtk~~i~-----~~~~~lp~i~v~a~~ 460 (483)
T KOG4341|consen 389 GIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDVTKEAIS-----RFATHLPNIKVHAYF 460 (483)
T ss_pred hhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhhhhhhhH-----HHHhhCccceehhhc
Confidence 2211 0011225677788888888766543333446778888888888776554321 122466655444443
|
|
| >KOG4341 consensus F-box protein containing LRR [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.01 E-value=4.8e-12 Score=127.41 Aligned_cols=273 Identities=20% Similarity=0.219 Sum_probs=160.0
Q ss_pred cccceeeccccccccccccccchhhcccccEEEeecCCCeEEEEeCCCccccccccceeecccccccccccccccccCCC
Q 003193 448 RTEDLHLDELAGFKNVVHELDDEEGFARLRHLHVHNGPEILHILNSDGRVGTFPLLESLFLHNLINLEKVCDGKVRLNED 527 (840)
Q Consensus 448 ~L~~L~L~~~~~~~~~~~~l~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~ 527 (840)
.|+.|.++++.....-+..... ..+|++++|.+.+|..++...- .......++|+.|.+..|+.++...-...
T Consensus 139 ~lk~LSlrG~r~v~~sslrt~~-~~CpnIehL~l~gc~~iTd~s~-~sla~~C~~l~~l~L~~c~~iT~~~Lk~l----- 211 (483)
T KOG4341|consen 139 FLKELSLRGCRAVGDSSLRTFA-SNCPNIEHLALYGCKKITDSSL-LSLARYCRKLRHLNLHSCSSITDVSLKYL----- 211 (483)
T ss_pred ccccccccccccCCcchhhHHh-hhCCchhhhhhhcceeccHHHH-HHHHHhcchhhhhhhcccchhHHHHHHHH-----
Confidence 4666777776655433221111 4566666666666653322100 00113455666666666666554432111
Q ss_pred CcccCCccEEEEecCCCcccccchhHHhhcccccEEEEecccccceeeccccccccccCCccccccccccceeecccCcc
Q 003193 528 DKSFSNLRIIKVEGCHRVKHLFPFSLVKNLLQLQKVKVTDCTNLKLIVGKESENSAHKNGSISGVYFRKLHFLKLQHLPQ 607 (840)
Q Consensus 528 ~~~~~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~c~~ 607 (840)
...+++|++|+++.|+.++.-.-....++...++++...+|..++.-.... .-...+-+.++++..|..
T Consensus 212 a~gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~-----------~~~~~~~i~~lnl~~c~~ 280 (483)
T KOG4341|consen 212 AEGCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLK-----------AAAYCLEILKLNLQHCNQ 280 (483)
T ss_pred HHhhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHH-----------HhccChHhhccchhhhcc
Confidence 234666666666666665552211223445555555555555443221100 011344455555556655
Q ss_pred cccccCCCCCCCccCCCCCcccccCCCCCcccccccccccCCcceEecccc-cchhhcccCCccccccCCCceEEEeccc
Q 003193 608 LTSSGFDLETPTNTQGSNPGIIAEGDPKDFTSLFNERVVFPSLKKLKLSSI-NVEKIWLNSFSAIESWGKNLTKLTVEKC 686 (840)
Q Consensus 608 L~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c-~l~~~~~~~~~~~~~~l~~L~~L~i~~C 686 (840)
+++.. ++..-..+..|+.|+.++| .+++.+...+. ....+|+.|.+.+|
T Consensus 281 lTD~~---------------------------~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg---~~~~~L~~l~l~~c 330 (483)
T KOG4341|consen 281 LTDED---------------------------LWLIACGCHALQVLCYSSCTDITDEVLWALG---QHCHNLQVLELSGC 330 (483)
T ss_pred ccchH---------------------------HHHHhhhhhHhhhhcccCCCCCchHHHHHHh---cCCCceEEEecccc
Confidence 54421 1222234778999999999 77776665553 46699999999999
Q ss_pred CCcceeechhhHhhhcccceeeecccccchhhhccCcccccCccccccccccccccccCCcceeecCCC----CccCCCc
Q 003193 687 GRLKFLFSSSMVNGLEQLQQLDISHCKSMNEVINTRVGRDDNMIEMVFPKLVSLQLSHLPKLTRFGIGD----SVEFPSL 762 (840)
Q Consensus 687 ~~L~~l~~~~~~~~l~sL~~L~i~~C~~L~~i~~~~~~~~~~~~~~~l~sL~~L~i~~c~~L~~l~~~~----~~~l~sL 762 (840)
.++++.--.....+.+.|+.+++.+|....+-. +. ....++|.|+.|.+++|...++-.... ......|
T Consensus 331 ~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~t-----L~--sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l 403 (483)
T KOG4341|consen 331 QQFSDRGFTMLGRNCPHLERLDLEECGLITDGT-----LA--SLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGL 403 (483)
T ss_pred chhhhhhhhhhhcCChhhhhhcccccceehhhh-----Hh--hhccCCchhccCChhhhhhhhhhhhhhhhhcccccccc
Confidence 998887554556788999999999998765431 11 112348999999999999887762211 1245678
Q ss_pred ceEEeccCCCcce
Q 003193 763 CQLQIACCPNLKI 775 (840)
Q Consensus 763 ~~L~i~~C~~L~~ 775 (840)
+.+.+.+||.+..
T Consensus 404 ~~lEL~n~p~i~d 416 (483)
T KOG4341|consen 404 EVLELDNCPLITD 416 (483)
T ss_pred ceeeecCCCCchH
Confidence 9999999988744
|
|
| >KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.00 E-value=1.5e-11 Score=128.31 Aligned_cols=178 Identities=22% Similarity=0.364 Sum_probs=146.9
Q ss_pred cCCCcEEEeccCCcccCCccc-CCCcceeEeeccCccccCCCchhhcCCCCCcEEEcCCCCCCCCChhhcCCCCCCEEEc
Q 003193 209 DEAPTAISIPFRGIYELPERL-GFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPSSLGCLINLRTLSL 287 (840)
Q Consensus 209 ~~~l~~L~l~~~~~~~l~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~l~~l~~L~~L~L 287 (840)
.......+++.|.+..+|... .+..|..+.+..|.+. .+|..+ .++..|.+||++.|+++.+|..++.|+ |++|-+
T Consensus 74 ltdt~~aDlsrNR~~elp~~~~~f~~Le~liLy~n~~r-~ip~~i-~~L~~lt~l~ls~NqlS~lp~~lC~lp-Lkvli~ 150 (722)
T KOG0532|consen 74 LTDTVFADLSRNRFSELPEEACAFVSLESLILYHNCIR-TIPEAI-CNLEALTFLDLSSNQLSHLPDGLCDLP-LKVLIV 150 (722)
T ss_pred ccchhhhhccccccccCchHHHHHHHHHHHHHHhccce-ecchhh-hhhhHHHHhhhccchhhcCChhhhcCc-ceeEEE
Confidence 344566788888888888766 5777888888877765 566665 788999999999999999999888775 899999
Q ss_pred cCCccCC-cccccCCCCCCEEeecCCCCcccChhhcCCCCCCEEEccCCCCCCccCcccccCCCCCcEEEccCCccccee
Q 003193 288 ENCLVVD-VAIIGDLKKLEILSLKHSSIEQLPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGNSFTQWKV 366 (840)
Q Consensus 288 ~~~~~~~-~~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~L~~~~~l~~~p~~~l~~L~~L~~L~l~~~~~~~~~ 366 (840)
++|+++. |..|+.+..|..||.+.|.+..+|..++.+.+|+.|++.. +.+..+|++ +.. -.|..|+++.|.+..
T Consensus 151 sNNkl~~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrR-n~l~~lp~E-l~~-LpLi~lDfScNkis~-- 225 (722)
T KOG0532|consen 151 SNNKLTSLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRR-NHLEDLPEE-LCS-LPLIRLDFSCNKISY-- 225 (722)
T ss_pred ecCccccCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhh-hhhhhCCHH-HhC-CceeeeecccCceee--
Confidence 9999988 8899999999999999999999999999999999999988 778888887 564 468889999887652
Q ss_pred cCCCCCCcccccCCCCCCeEEEecCCCCCCCCcc
Q 003193 367 EGQSNASLGELKQLSRLTTLEVHIPDAQVMPQDL 400 (840)
Q Consensus 367 ~~~~~~~l~~l~~l~~L~~L~l~~~~~~~~~~~~ 400 (840)
....+.+|++|+.|-+.+|.+..-|..+
T Consensus 226 ------iPv~fr~m~~Lq~l~LenNPLqSPPAqI 253 (722)
T KOG0532|consen 226 ------LPVDFRKMRHLQVLQLENNPLQSPPAQI 253 (722)
T ss_pred ------cchhhhhhhhheeeeeccCCCCCChHHH
Confidence 3367888899999999999888777665
|
|
| >KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.98 E-value=1.1e-11 Score=123.65 Aligned_cols=258 Identities=17% Similarity=0.205 Sum_probs=158.4
Q ss_pred cchhhhh---hccCCCcEEEeccCCcccCCcc-c-CCCcceeEeeccCccccCCCchhhcCCCCCcEEEcCCCCCCCC-C
Q 003193 200 DLKEELD---KIDEAPTAISIPFRGIYELPER-L-GFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSL-P 273 (840)
Q Consensus 200 ~~~~~~~---~~~~~l~~L~l~~~~~~~l~~~-~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~l-p 273 (840)
.+..+|. +..+++|+|+++.|+|+.+.+. + +++++.+|.+.+++....+|.+.|.++..|+.|.+.-|.+..+ .
T Consensus 78 ~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNan~i~Cir~ 157 (498)
T KOG4237|consen 78 QISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNANHINCIRQ 157 (498)
T ss_pred CcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcChhhhcchhH
Confidence 3444555 5678899999999999887554 3 7888888888886666689999999999999999999988865 5
Q ss_pred hhhcCCCCCCEEEccCCccCC-c-ccccCCCCCCEEeecCCCCc---c----------cChhhcCCCCCCEEEccCCCCC
Q 003193 274 SSLGCLINLRTLSLENCLVVD-V-AIIGDLKKLEILSLKHSSIE---Q----------LPREIGQLTCLKLLDLSNCSKL 338 (840)
Q Consensus 274 ~~l~~l~~L~~L~L~~~~~~~-~-~~i~~L~~L~~L~l~~~~l~---~----------lp~~i~~L~~L~~L~L~~~~~l 338 (840)
+.+..+++|+.|.+.+|.+.. + ..+..+..++++.+..|.+. . .|..++.....+-..+.+ ..+
T Consensus 158 ~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~~p~rl~~-~Ri 236 (498)
T KOG4237|consen 158 DALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCVSPYRLYY-KRI 236 (498)
T ss_pred HHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccceecchHHHHH-HHh
Confidence 678889999999999988877 3 47888888888888776421 1 122222222222222222 222
Q ss_pred CccCccccc-CCCCCcEEEccCCcccceecCCCCCCcccccCCCCCCeEEEecCCCCCCCCcccccCcceEEEEEcCccC
Q 003193 339 KEIRPNVIS-NLTRLEELYMGNSFTQWKVEGQSNASLGELKQLSRLTTLEVHIPDAQVMPQDLVFVELERFRICIGDVWS 417 (840)
Q Consensus 339 ~~~p~~~l~-~L~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 417 (840)
..++...+. .+..+..=..+.++.. ...-..-++.|++|++|++++|.++.+.+.
T Consensus 237 ~q~~a~kf~c~~esl~s~~~~~d~~d------~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~------------------ 292 (498)
T KOG4237|consen 237 NQEDARKFLCSLESLPSRLSSEDFPD------SICPAKCFKKLPNLRKLNLSNNKITRIEDG------------------ 292 (498)
T ss_pred cccchhhhhhhHHhHHHhhccccCcC------CcChHHHHhhcccceEeccCCCccchhhhh------------------
Confidence 223222111 0111111011111110 011123367788888888888777655433
Q ss_pred CCCCccccceEEEeeCCCccchhhHHHHHhcccceeeccccccccccccccchhhcccccEEEeecCC
Q 003193 418 WSDGYETSKTLKLQLNNSTYLGYGMKMLLKRTEDLHLDELAGFKNVVHELDDEEGFARLRHLHVHNGP 485 (840)
Q Consensus 418 ~~~~~~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~~~~l~~L~~L~l~~~~ 485 (840)
|+.....++.|.|..+....+...++..+..|+.|+|.++......+..| +.+..|.+|.+-.++
T Consensus 293 aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF---~~~~~l~~l~l~~Np 357 (498)
T KOG4237|consen 293 AFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAF---QTLFSLSTLNLLSNP 357 (498)
T ss_pred hhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccc---cccceeeeeehccCc
Confidence 23344445555555566666666666666777777777776655555555 456666666666554
|
|
| >cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily | Back alignment and domain information |
|---|
Probab=98.97 E-value=1.7e-10 Score=122.85 Aligned_cols=158 Identities=19% Similarity=0.181 Sum_probs=84.8
Q ss_pred CCCcceeEeeccCccccC----CCchhhcCCCCCcEEEcCCCCCCC-------CChhhcCCCCCCEEEccCCccCC--cc
Q 003193 230 GFLKLKLFLFFTENLSLQ----IPDPFFEGMTELRVLDLTGFRFHS-------LPSSLGCLINLRTLSLENCLVVD--VA 296 (840)
Q Consensus 230 ~~~~L~~L~l~~~~~~~~----~~~~~~~~l~~Lr~L~l~~~~~~~-------lp~~l~~l~~L~~L~L~~~~~~~--~~ 296 (840)
.+.+|+.+.+.++.+... ++. .+...+.++.|+++++.+.. ++..+..+++|++|++++|.+.. +.
T Consensus 21 ~l~~L~~l~l~~~~l~~~~~~~i~~-~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~ 99 (319)
T cd00116 21 KLLCLQVLRLEGNTLGEEAAKALAS-ALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCG 99 (319)
T ss_pred HHhhccEEeecCCCCcHHHHHHHHH-HHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHH
Confidence 345577777776665321 222 23455667777777766542 23455566677777777776653 33
Q ss_pred cccCCCC---CCEEeecCCCCc-----ccChhhcCC-CCCCEEEccCCCCCC-----ccCcccccCCCCCcEEEccCCcc
Q 003193 297 IIGDLKK---LEILSLKHSSIE-----QLPREIGQL-TCLKLLDLSNCSKLK-----EIRPNVISNLTRLEELYMGNSFT 362 (840)
Q Consensus 297 ~i~~L~~---L~~L~l~~~~l~-----~lp~~i~~L-~~L~~L~L~~~~~l~-----~~p~~~l~~L~~L~~L~l~~~~~ 362 (840)
.+..+.+ |++|++++|++. .+...+..+ ++|+.|++++|. +. .++.. +..+++|++|++++|.+
T Consensus 100 ~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~-l~~~~~~~~~~~-~~~~~~L~~L~l~~n~l 177 (319)
T cd00116 100 VLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNR-LEGASCEALAKA-LRANRDLKELNLANNGI 177 (319)
T ss_pred HHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCc-CCchHHHHHHHH-HHhCCCcCEEECcCCCC
Confidence 3333333 777777777665 223344555 677777777743 32 12222 45556677777766654
Q ss_pred cceecCCCCCCcccccCCCCCCeEEEecCCC
Q 003193 363 QWKVEGQSNASLGELKQLSRLTTLEVHIPDA 393 (840)
Q Consensus 363 ~~~~~~~~~~~l~~l~~l~~L~~L~l~~~~~ 393 (840)
.... .......+..+++|+.|+++++.+
T Consensus 178 ~~~~---~~~l~~~l~~~~~L~~L~L~~n~i 205 (319)
T cd00116 178 GDAG---IRALAEGLKANCNLEVLDLNNNGL 205 (319)
T ss_pred chHH---HHHHHHHHHhCCCCCEEeccCCcc
Confidence 3210 001112334445666666665544
|
LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). |
| >KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.95 E-value=4.1e-11 Score=125.18 Aligned_cols=149 Identities=24% Similarity=0.365 Sum_probs=100.6
Q ss_pred cCCCcEEEeccCCcccCCccc-CCCcceeEeeccCccccCCCchhhcCCCCCcEEEcCCCCCCCCChhhcCCCCCCEEEc
Q 003193 209 DEAPTAISIPFRGIYELPERL-GFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPSSLGCLINLRTLSL 287 (840)
Q Consensus 209 ~~~l~~L~l~~~~~~~l~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~l~~l~~L~~L~L 287 (840)
...+..+.+..|.+..+|..+ .+..|..++++.|.+. .+|..+ ..+ -|++|-+++|+++.+|+.++.+.+|..||.
T Consensus 97 f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~NqlS-~lp~~l-C~l-pLkvli~sNNkl~~lp~~ig~~~tl~~ld~ 173 (722)
T KOG0532|consen 97 FVSLESLILYHNCIRTIPEAICNLEALTFLDLSSNQLS-HLPDGL-CDL-PLKVLIVSNNKLTSLPEEIGLLPTLAHLDV 173 (722)
T ss_pred HHHHHHHHHHhccceecchhhhhhhHHHHhhhccchhh-cCChhh-hcC-cceeEEEecCccccCCcccccchhHHHhhh
Confidence 334455556666666666555 5666777777777665 455544 222 467777777777777777777777777777
Q ss_pred cCCccCC-cccccCCCCCCEEeecCCCCcccChhhcCCCCCCEEEccCCCCCCccCcccccCCCCCcEEEccCCccc
Q 003193 288 ENCLVVD-VAIIGDLKKLEILSLKHSSIEQLPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGNSFTQ 363 (840)
Q Consensus 288 ~~~~~~~-~~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~L~~~~~l~~~p~~~l~~L~~L~~L~l~~~~~~ 363 (840)
+.|.+.. |..++.+..|+.|+++.|++..+|..++.| .|..||++. |++..+|.. |.+|+.||+|-+.+|.+.
T Consensus 174 s~nei~slpsql~~l~slr~l~vrRn~l~~lp~El~~L-pLi~lDfSc-Nkis~iPv~-fr~m~~Lq~l~LenNPLq 247 (722)
T KOG0532|consen 174 SKNEIQSLPSQLGYLTSLRDLNVRRNHLEDLPEELCSL-PLIRLDFSC-NKISYLPVD-FRKMRHLQVLQLENNPLQ 247 (722)
T ss_pred hhhhhhhchHHhhhHHHHHHHHHhhhhhhhCCHHHhCC-ceeeeeccc-Cceeecchh-hhhhhhheeeeeccCCCC
Confidence 7777666 777777777777777777777777777743 467777765 677777766 677777777777776553
|
|
| >PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A | Back alignment and domain information |
|---|
Probab=98.94 E-value=9.8e-10 Score=102.29 Aligned_cols=118 Identities=25% Similarity=0.348 Sum_probs=32.1
Q ss_pred CCcEEEeccCCcccCCccc-CCCcceeEeeccCccccCCCchhhcCCCCCcEEEcCCCCCCCCChhhc-CCCCCCEEEcc
Q 003193 211 APTAISIPFRGIYELPERL-GFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPSSLG-CLINLRTLSLE 288 (840)
Q Consensus 211 ~l~~L~l~~~~~~~l~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~l~-~l~~L~~L~L~ 288 (840)
+.+.|++.+|.+..+.... .+.+|+.|++++|.+.. +.. +..+++|++|++++|.++++++.+. .+++|+.|+++
T Consensus 20 ~~~~L~L~~n~I~~Ie~L~~~l~~L~~L~Ls~N~I~~-l~~--l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~L~ 96 (175)
T PF14580_consen 20 KLRELNLRGNQISTIENLGATLDKLEVLDLSNNQITK-LEG--LPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELYLS 96 (175)
T ss_dssp ----------------S--TT-TT--EEE-TTS--S---TT------TT--EEE--SS---S-CHHHHHH-TT--EEE-T
T ss_pred ccccccccccccccccchhhhhcCCCEEECCCCCCcc-ccC--ccChhhhhhcccCCCCCCccccchHHhCCcCCEEECc
Confidence 4566666666665554332 34555566665555442 221 2445555666666665555544332 45556666665
Q ss_pred CCccCC---cccccCCCCCCEEeecCCCCcccCh----hhcCCCCCCEEE
Q 003193 289 NCLVVD---VAIIGDLKKLEILSLKHSSIEQLPR----EIGQLTCLKLLD 331 (840)
Q Consensus 289 ~~~~~~---~~~i~~L~~L~~L~l~~~~l~~lp~----~i~~L~~L~~L~ 331 (840)
+|.+.+ ...++.+++|++|++.+|.++.-+. -+..+++|+.||
T Consensus 97 ~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD 146 (175)
T PF14580_consen 97 NNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLD 146 (175)
T ss_dssp TS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEET
T ss_pred CCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeC
Confidence 555544 2344455555555555555543331 234444444444
|
|
| >PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A | Back alignment and domain information |
|---|
Probab=98.94 E-value=6e-10 Score=103.68 Aligned_cols=106 Identities=26% Similarity=0.405 Sum_probs=33.0
Q ss_pred CCCCCcEEEcCCCCCCCCChhhc-CCCCCCEEEccCCccCCcccccCCCCCCEEeecCCCCcccChhh-cCCCCCCEEEc
Q 003193 255 GMTELRVLDLTGFRFHSLPSSLG-CLINLRTLSLENCLVVDVAIIGDLKKLEILSLKHSSIEQLPREI-GQLTCLKLLDL 332 (840)
Q Consensus 255 ~l~~Lr~L~l~~~~~~~lp~~l~-~l~~L~~L~L~~~~~~~~~~i~~L~~L~~L~l~~~~l~~lp~~i-~~L~~L~~L~L 332 (840)
+..++|.|+|.+|.++.+. .++ .+.+|+.|++++|.++..+.+..+++|++|++++|+|+.++..+ ..+++|++|++
T Consensus 17 n~~~~~~L~L~~n~I~~Ie-~L~~~l~~L~~L~Ls~N~I~~l~~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~L 95 (175)
T PF14580_consen 17 NPVKLRELNLRGNQISTIE-NLGATLDKLEVLDLSNNQITKLEGLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELYL 95 (175)
T ss_dssp --------------------S--TT-TT--EEE-TTS--S--TT----TT--EEE--SS---S-CHHHHHH-TT--EEE-
T ss_pred ccccccccccccccccccc-chhhhhcCCCEEECCCCCCccccCccChhhhhhcccCCCCCCccccchHHhCCcCCEEEC
Confidence 4445677777777776653 344 46677777777777777666777777777777777777776555 35677777777
Q ss_pred cCCCCCCccCc-ccccCCCCCcEEEccCCcc
Q 003193 333 SNCSKLKEIRP-NVISNLTRLEELYMGNSFT 362 (840)
Q Consensus 333 ~~~~~l~~~p~-~~l~~L~~L~~L~l~~~~~ 362 (840)
++ +.+..+.. ..++.+++|++|++.+|.+
T Consensus 96 ~~-N~I~~l~~l~~L~~l~~L~~L~L~~NPv 125 (175)
T PF14580_consen 96 SN-NKISDLNELEPLSSLPKLRVLSLEGNPV 125 (175)
T ss_dssp TT-S---SCCCCGGGGG-TT--EEE-TT-GG
T ss_pred cC-CcCCChHHhHHHHcCCCcceeeccCCcc
Confidence 76 45544322 2255667777777776654
|
|
| >cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily | Back alignment and domain information |
|---|
Probab=98.94 E-value=3.5e-10 Score=120.55 Aligned_cols=180 Identities=21% Similarity=0.146 Sum_probs=115.4
Q ss_pred cCCCcEEEeccCCcc-----cCCccc-CCCcceeEeeccCcccc------CCCchhhcCCCCCcEEEcCCCCCC-CCChh
Q 003193 209 DEAPTAISIPFRGIY-----ELPERL-GFLKLKLFLFFTENLSL------QIPDPFFEGMTELRVLDLTGFRFH-SLPSS 275 (840)
Q Consensus 209 ~~~l~~L~l~~~~~~-----~l~~~~-~~~~L~~L~l~~~~~~~------~~~~~~~~~l~~Lr~L~l~~~~~~-~lp~~ 275 (840)
...++.+.+.++.+. .++... ..+.++.+.+.++.... .++ ..+..+++|+.|++++|.+. ..+..
T Consensus 22 l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~-~~l~~~~~L~~L~l~~~~~~~~~~~~ 100 (319)
T cd00116 22 LLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLL-QGLTKGCGLQELDLSDNALGPDGCGV 100 (319)
T ss_pred HhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHH-HHHHhcCceeEEEccCCCCChhHHHH
Confidence 344777777777762 233322 45668888887765541 111 23466788888888888876 34455
Q ss_pred hcCCCC---CCEEEccCCccCC------cccccCC-CCCCEEeecCCCCc-----ccChhhcCCCCCCEEEccCCCCCCc
Q 003193 276 LGCLIN---LRTLSLENCLVVD------VAIIGDL-KKLEILSLKHSSIE-----QLPREIGQLTCLKLLDLSNCSKLKE 340 (840)
Q Consensus 276 l~~l~~---L~~L~L~~~~~~~------~~~i~~L-~~L~~L~l~~~~l~-----~lp~~i~~L~~L~~L~L~~~~~l~~ 340 (840)
+..+.+ |++|++++|.+.. ...+..+ ++|+.|++++|.++ .++..+..+++|++|++++| .+..
T Consensus 101 ~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n-~l~~ 179 (319)
T cd00116 101 LESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANN-GIGD 179 (319)
T ss_pred HHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCC-CCch
Confidence 555554 8888888888763 2345566 88888888888777 44556677788888888885 3431
Q ss_pred -----cCcccccCCCCCcEEEccCCcccceecCCCCCCcccccCCCCCCeEEEecCCCC
Q 003193 341 -----IRPNVISNLTRLEELYMGNSFTQWKVEGQSNASLGELKQLSRLTTLEVHIPDAQ 394 (840)
Q Consensus 341 -----~p~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~l~~L~~L~l~~~~~~ 394 (840)
++.. +..+++|++|++++|.+..... ......+..+++|+.|++++|.+.
T Consensus 180 ~~~~~l~~~-l~~~~~L~~L~L~~n~i~~~~~---~~l~~~~~~~~~L~~L~ls~n~l~ 234 (319)
T cd00116 180 AGIRALAEG-LKANCNLEVLDLNNNGLTDEGA---SALAETLASLKSLEVLNLGDNNLT 234 (319)
T ss_pred HHHHHHHHH-HHhCCCCCEEeccCCccChHHH---HHHHHHhcccCCCCEEecCCCcCc
Confidence 2222 4556788888888886532110 111234556778888888877654
|
LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). |
| >KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.92 E-value=1.7e-10 Score=110.91 Aligned_cols=135 Identities=21% Similarity=0.219 Sum_probs=115.3
Q ss_pred CCCCCcEEEcCCCCCCCCChhhcCCCCCCEEEccCCccCCcccccCCCCCCEEeecCCCCcccChhhcCCCCCCEEEccC
Q 003193 255 GMTELRVLDLTGFRFHSLPSSLGCLINLRTLSLENCLVVDVAIIGDLKKLEILSLKHSSIEQLPREIGQLTCLKLLDLSN 334 (840)
Q Consensus 255 ~l~~Lr~L~l~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~L~~ 334 (840)
..+.|..+|+++|.++.+-++..-++.+|+|++++|.+....++..|.+|+.||+++|.++++-.+-.+|.|.++|.+.+
T Consensus 282 TWq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v~nLa~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~La~ 361 (490)
T KOG1259|consen 282 TWQELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTVQNLAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKLAQ 361 (490)
T ss_pred hHhhhhhccccccchhhhhhhhhhccceeEEeccccceeeehhhhhcccceEeecccchhHhhhhhHhhhcCEeeeehhh
Confidence 45679999999999999989999999999999999999998889999999999999999998887778899999999999
Q ss_pred CCCCCccCcccccCCCCCcEEEccCCcccceecCCCCCCcccccCCCCCCeEEEecCCCCCCCC
Q 003193 335 CSKLKEIRPNVISNLTRLEELYMGNSFTQWKVEGQSNASLGELKQLSRLTTLEVHIPDAQVMPQ 398 (840)
Q Consensus 335 ~~~l~~~p~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~l~~L~~L~l~~~~~~~~~~ 398 (840)
+.+..+.. +++|-+|..|++++|++... .....+++++.|+.+.+.+|.+..+++
T Consensus 362 -N~iE~LSG--L~KLYSLvnLDl~~N~Ie~l------deV~~IG~LPCLE~l~L~~NPl~~~vd 416 (490)
T KOG1259|consen 362 -NKIETLSG--LRKLYSLVNLDLSSNQIEEL------DEVNHIGNLPCLETLRLTGNPLAGSVD 416 (490)
T ss_pred -hhHhhhhh--hHhhhhheeccccccchhhH------HHhcccccccHHHHHhhcCCCccccch
Confidence 78887754 89999999999999976531 233567788888888888887766554
|
|
| >COG4886 Leucine-rich repeat (LRR) protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.71 E-value=1.3e-08 Score=111.71 Aligned_cols=169 Identities=28% Similarity=0.371 Sum_probs=77.2
Q ss_pred CCcceeEeeccCccccCCCchhhcCCC-CCcEEEcCCCCCCCCChhhcCCCCCCEEEccCCccCC-cccccCCCCCCEEe
Q 003193 231 FLKLKLFLFFTENLSLQIPDPFFEGMT-ELRVLDLTGFRFHSLPSSLGCLINLRTLSLENCLVVD-VAIIGDLKKLEILS 308 (840)
Q Consensus 231 ~~~L~~L~l~~~~~~~~~~~~~~~~l~-~Lr~L~l~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~-~~~i~~L~~L~~L~ 308 (840)
.+.+..|.+.+|.+. .++... ..++ +|+.|++++|.+..+|..++.+++|+.|++++|++.+ +...+.+.+|+.|+
T Consensus 115 ~~~l~~L~l~~n~i~-~i~~~~-~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~L~ 192 (394)
T COG4886 115 LTNLTSLDLDNNNIT-DIPPLI-GLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLD 192 (394)
T ss_pred ccceeEEecCCcccc-cCcccc-ccchhhcccccccccchhhhhhhhhccccccccccCCchhhhhhhhhhhhhhhhhee
Confidence 344455555444443 232222 2232 4555555555555554445555555555555555555 33333555555555
Q ss_pred ecCCCCcccChhhcCCCCCCEEEccCCCCCCccCcccccCCCCCcEEEccCCcccceecCCCCCCcccccCCCCCCeEEE
Q 003193 309 LKHSSIEQLPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGNSFTQWKVEGQSNASLGELKQLSRLTTLEV 388 (840)
Q Consensus 309 l~~~~l~~lp~~i~~L~~L~~L~L~~~~~l~~~p~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~l~~L~~L~l 388 (840)
+++|+++.+|..++.+.+|++|.+++ +.....+.. +.++.++..+.+.++.... .+..++.+.+++.|++
T Consensus 193 ls~N~i~~l~~~~~~~~~L~~l~~~~-N~~~~~~~~-~~~~~~l~~l~l~~n~~~~--------~~~~~~~l~~l~~L~~ 262 (394)
T COG4886 193 LSGNKISDLPPEIELLSALEELDLSN-NSIIELLSS-LSNLKNLSGLELSNNKLED--------LPESIGNLSNLETLDL 262 (394)
T ss_pred ccCCccccCchhhhhhhhhhhhhhcC-Ccceecchh-hhhcccccccccCCceeee--------ccchhccccccceecc
Confidence 55555555555444444455555554 212222222 4445555555444443211 0133334444555555
Q ss_pred ecCCCCCCCCcccccCcceEEEE
Q 003193 389 HIPDAQVMPQDLVFVELERFRIC 411 (840)
Q Consensus 389 ~~~~~~~~~~~~~~~~L~~L~l~ 411 (840)
+.|.+..++......+++.+.+.
T Consensus 263 s~n~i~~i~~~~~~~~l~~L~~s 285 (394)
T COG4886 263 SNNQISSISSLGSLTNLRELDLS 285 (394)
T ss_pred ccccccccccccccCccCEEecc
Confidence 55555444443344444444443
|
|
| >KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.71 E-value=1.6e-09 Score=104.39 Aligned_cols=128 Identities=27% Similarity=0.334 Sum_probs=81.7
Q ss_pred CCcceeEeeccCccccCCCchhhcCCCCCcEEEcCCCCCCCCChhhcCCCCCCEEEccCCccCC-cccccCCCCCCEEee
Q 003193 231 FLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPSSLGCLINLRTLSLENCLVVD-VAIIGDLKKLEILSL 309 (840)
Q Consensus 231 ~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~-~~~i~~L~~L~~L~l 309 (840)
+..|.++++++|.+. .+..++ .-.+.+|+|++++|.+..+-. +..|++|+.|||++|.++. ...-.+|-|.++|.+
T Consensus 283 Wq~LtelDLS~N~I~-~iDESv-KL~Pkir~L~lS~N~i~~v~n-La~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~L 359 (490)
T KOG1259|consen 283 WQELTELDLSGNLIT-QIDESV-KLAPKLRRLILSQNRIRTVQN-LAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKL 359 (490)
T ss_pred Hhhhhhccccccchh-hhhhhh-hhccceeEEeccccceeeehh-hhhcccceEeecccchhHhhhhhHhhhcCEeeeeh
Confidence 556666777766654 333333 455677777777777766543 6667777777777777666 344446667777777
Q ss_pred cCCCCcccChhhcCCCCCCEEEccCCCCCCccCc-ccccCCCCCcEEEccCCccc
Q 003193 310 KHSSIEQLPREIGQLTCLKLLDLSNCSKLKEIRP-NVISNLTRLEELYMGNSFTQ 363 (840)
Q Consensus 310 ~~~~l~~lp~~i~~L~~L~~L~L~~~~~l~~~p~-~~l~~L~~L~~L~l~~~~~~ 363 (840)
++|.|..+. ++++|.+|..||+++ +.+..+.. ..||+|+.|+++.+.+|.+.
T Consensus 360 a~N~iE~LS-GL~KLYSLvnLDl~~-N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~ 412 (490)
T KOG1259|consen 360 AQNKIETLS-GLRKLYSLVNLDLSS-NQIEELDEVNHIGNLPCLETLRLTGNPLA 412 (490)
T ss_pred hhhhHhhhh-hhHhhhhheeccccc-cchhhHHHhcccccccHHHHHhhcCCCcc
Confidence 777666663 567777777777777 45554432 22677777777777776554
|
|
| >COG4886 Leucine-rich repeat (LRR) protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.71 E-value=1.5e-08 Score=111.08 Aligned_cols=172 Identities=30% Similarity=0.423 Sum_probs=89.4
Q ss_pred CCCcEEEeccCCcccCCcccCCC--cceeEeeccCccccCCCchhhcCCCCCcEEEcCCCCCCCCChhhcCCCCCCEEEc
Q 003193 210 EAPTAISIPFRGIYELPERLGFL--KLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPSSLGCLINLRTLSL 287 (840)
Q Consensus 210 ~~l~~L~l~~~~~~~l~~~~~~~--~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~l~~l~~L~~L~L 287 (840)
..++.+++..+.+..++...... +|+.|++.+|.+. .+|.. ...++.|+.|++++|++..+|...+.+..|+.|++
T Consensus 116 ~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~-~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~L~l 193 (394)
T COG4886 116 TNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIE-SLPSP-LRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLDL 193 (394)
T ss_pred cceeEEecCCcccccCccccccchhhcccccccccchh-hhhhh-hhccccccccccCCchhhhhhhhhhhhhhhhheec
Confidence 34555555555555555544332 5556665555543 22222 24555556666666655555555555555666666
Q ss_pred cCCccCC-cccccCCCCCCEEeecCCCCcccChhhcCCCCCCEEEccCCCCCCccCcccccCCCCCcEEEccCCccccee
Q 003193 288 ENCLVVD-VAIIGDLKKLEILSLKHSSIEQLPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGNSFTQWKV 366 (840)
Q Consensus 288 ~~~~~~~-~~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~L~~~~~l~~~p~~~l~~L~~L~~L~l~~~~~~~~~ 366 (840)
++|.+.. |..++.+.+|++|.+++|.+...+..+.++.++..+.+.+ +.+..++.. ++.+.+++.|++++|.+.
T Consensus 194 s~N~i~~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~-n~~~~~~~~-~~~l~~l~~L~~s~n~i~--- 268 (394)
T COG4886 194 SGNKISDLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSN-NKLEDLPES-IGNLSNLETLDLSNNQIS--- 268 (394)
T ss_pred cCCccccCchhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCC-ceeeeccch-hccccccceecccccccc---
Confidence 6655555 4444455555566655555455555555555555555444 344443332 455555555555555432
Q ss_pred cCCCCCCcccccCCCCCCeEEEecCCCC
Q 003193 367 EGQSNASLGELKQLSRLTTLEVHIPDAQ 394 (840)
Q Consensus 367 ~~~~~~~l~~l~~l~~L~~L~l~~~~~~ 394 (840)
.+..+..+.+|+.|+++++...
T Consensus 269 ------~i~~~~~~~~l~~L~~s~n~~~ 290 (394)
T COG4886 269 ------SISSLGSLTNLRELDLSGNSLS 290 (394)
T ss_pred ------ccccccccCccCEEeccCcccc
Confidence 1122445555555555555443
|
|
| >KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.63 E-value=7.6e-09 Score=105.32 Aligned_cols=189 Identities=19% Similarity=0.126 Sum_probs=126.7
Q ss_pred hccCCCcEEEeccCCcccCCc--cc-CCCcceeEeeccCcccc-CCCchhhcCCCCCcEEEcCCCCCCCCChh--hcCCC
Q 003193 207 KIDEAPTAISIPFRGIYELPE--RL-GFLKLKLFLFFTENLSL-QIPDPFFEGMTELRVLDLTGFRFHSLPSS--LGCLI 280 (840)
Q Consensus 207 ~~~~~l~~L~l~~~~~~~l~~--~~-~~~~L~~L~l~~~~~~~-~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~--l~~l~ 280 (840)
...+++|.+++.++.+...+. .. .+++++.|+++.|-+.. ..--.+...+++|+.|+++.|.+...-++ -..+.
T Consensus 118 sn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~ 197 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLS 197 (505)
T ss_pred hhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhh
Confidence 567889999999888876663 22 69999999998876532 12234567899999999999987643222 23678
Q ss_pred CCCEEEccCCccCC---cccccCCCCCCEEeecCC-CCcccChhhcCCCCCCEEEccCCCCCCccC-cccccCCCCCcEE
Q 003193 281 NLRTLSLENCLVVD---VAIIGDLKKLEILSLKHS-SIEQLPREIGQLTCLKLLDLSNCSKLKEIR-PNVISNLTRLEEL 355 (840)
Q Consensus 281 ~L~~L~L~~~~~~~---~~~i~~L~~L~~L~l~~~-~l~~lp~~i~~L~~L~~L~L~~~~~l~~~p-~~~l~~L~~L~~L 355 (840)
+|+.|.++.|.++. ......+++|+.|++.+| .+..-......+..|+.|||++++ +...+ ...++.++.|+.|
T Consensus 198 ~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~-li~~~~~~~~~~l~~L~~L 276 (505)
T KOG3207|consen 198 HLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNN-LIDFDQGYKVGTLPGLNQL 276 (505)
T ss_pred hhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCc-ccccccccccccccchhhh
Confidence 89999999998876 244556788999999888 333222334556788999999844 44444 1226788888888
Q ss_pred EccCCcccceecCCCCCCcccccCCCCCCeEEEecCCCCCCC
Q 003193 356 YMGNSFTQWKVEGQSNASLGELKQLSRLTTLEVHIPDAQVMP 397 (840)
Q Consensus 356 ~l~~~~~~~~~~~~~~~~l~~l~~l~~L~~L~l~~~~~~~~~ 397 (840)
+++.|.+.. +.............+.+|+.|++..|.+...+
T Consensus 277 nls~tgi~s-i~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~ 317 (505)
T KOG3207|consen 277 NLSSTGIAS-IAEPDVESLDKTHTFPKLEYLNISENNIRDWR 317 (505)
T ss_pred hccccCcch-hcCCCccchhhhcccccceeeecccCcccccc
Confidence 888776532 11122222333455677788888777765444
|
|
| >PLN03150 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.49 E-value=3.8e-07 Score=104.76 Aligned_cols=104 Identities=21% Similarity=0.365 Sum_probs=85.7
Q ss_pred CCcEEEcCCCCCC-CCChhhcCCCCCCEEEccCCccCC--cccccCCCCCCEEeecCCCCc-ccChhhcCCCCCCEEEcc
Q 003193 258 ELRVLDLTGFRFH-SLPSSLGCLINLRTLSLENCLVVD--VAIIGDLKKLEILSLKHSSIE-QLPREIGQLTCLKLLDLS 333 (840)
Q Consensus 258 ~Lr~L~l~~~~~~-~lp~~l~~l~~L~~L~L~~~~~~~--~~~i~~L~~L~~L~l~~~~l~-~lp~~i~~L~~L~~L~L~ 333 (840)
.++.|+|++|.+. .+|..++.+++|++|+|++|.+.. |..++.+++|++|++++|+++ .+|..++++++|++|+++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 4788899999887 678889999999999999998875 778999999999999999887 788889999999999999
Q ss_pred CCCCCCccCcccccC-CCCCcEEEccCCcc
Q 003193 334 NCSKLKEIRPNVISN-LTRLEELYMGNSFT 362 (840)
Q Consensus 334 ~~~~l~~~p~~~l~~-L~~L~~L~l~~~~~ 362 (840)
+|.....+|.. ++. ..++..+++.+|..
T Consensus 499 ~N~l~g~iP~~-l~~~~~~~~~l~~~~N~~ 527 (623)
T PLN03150 499 GNSLSGRVPAA-LGGRLLHRASFNFTDNAG 527 (623)
T ss_pred CCcccccCChH-HhhccccCceEEecCCcc
Confidence 86655677766 454 35677888877743
|
|
| >KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.45 E-value=4e-08 Score=100.20 Aligned_cols=181 Identities=19% Similarity=0.161 Sum_probs=132.7
Q ss_pred hccCCCcEEEeccCCcccCCcc---c-CCCcceeEeeccCccccCCCchhhcCCCCCcEEEcCCCCCC--CCChhhcCCC
Q 003193 207 KIDEAPTAISIPFRGIYELPER---L-GFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFH--SLPSSLGCLI 280 (840)
Q Consensus 207 ~~~~~l~~L~l~~~~~~~l~~~---~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~--~lp~~l~~l~ 280 (840)
....++|.|+++.|-+...... . .+|+|+.|+++.|.+........-..+++|+.|.+++|.++ .+-..+..++
T Consensus 143 k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fP 222 (505)
T KOG3207|consen 143 KILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFP 222 (505)
T ss_pred hhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhCC
Confidence 5678999999999877544322 2 69999999999998754443333346889999999999987 3444566789
Q ss_pred CCCEEEccCCc-cCC-cccccCCCCCCEEeecCCCCcccC--hhhcCCCCCCEEEccCCCCCCccC--cc----cccCCC
Q 003193 281 NLRTLSLENCL-VVD-VAIIGDLKKLEILSLKHSSIEQLP--REIGQLTCLKLLDLSNCSKLKEIR--PN----VISNLT 350 (840)
Q Consensus 281 ~L~~L~L~~~~-~~~-~~~i~~L~~L~~L~l~~~~l~~lp--~~i~~L~~L~~L~L~~~~~l~~~p--~~----~l~~L~ 350 (840)
+|..|+|.+|. +.. -.....++.|+.|||++|++...+ ..++.++.|+.|+++. +.+.++. +. ....++
T Consensus 223 sl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~-tgi~si~~~d~~s~~kt~~f~ 301 (505)
T KOG3207|consen 223 SLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSS-TGIASIAEPDVESLDKTHTFP 301 (505)
T ss_pred cHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhhccc-cCcchhcCCCccchhhhcccc
Confidence 99999999995 332 455567889999999999888777 5679999999999998 4555432 21 125678
Q ss_pred CCcEEEccCCcccceecCCCCCCcccccCCCCCCeEEEecCCCC
Q 003193 351 RLEELYMGNSFTQWKVEGQSNASLGELKQLSRLTTLEVHIPDAQ 394 (840)
Q Consensus 351 ~L~~L~l~~~~~~~~~~~~~~~~l~~l~~l~~L~~L~l~~~~~~ 394 (840)
+|+.|++..|.+.. -..+..+..+.+|+.|.+..+.+.
T Consensus 302 kL~~L~i~~N~I~~------w~sl~~l~~l~nlk~l~~~~n~ln 339 (505)
T KOG3207|consen 302 KLEYLNISENNIRD------WRSLNHLRTLENLKHLRITLNYLN 339 (505)
T ss_pred cceeeecccCcccc------ccccchhhccchhhhhhccccccc
Confidence 99999999987631 134466666777777776665443
|
|
| >PLN03150 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.40 E-value=6.9e-07 Score=102.65 Aligned_cols=105 Identities=25% Similarity=0.296 Sum_probs=84.1
Q ss_pred CCCEEEccCCccCC--cccccCCCCCCEEeecCCCCc-ccChhhcCCCCCCEEEccCCCCCCccCcccccCCCCCcEEEc
Q 003193 281 NLRTLSLENCLVVD--VAIIGDLKKLEILSLKHSSIE-QLPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYM 357 (840)
Q Consensus 281 ~L~~L~L~~~~~~~--~~~i~~L~~L~~L~l~~~~l~-~lp~~i~~L~~L~~L~L~~~~~l~~~p~~~l~~L~~L~~L~l 357 (840)
.++.|+|++|.+.. |..++++++|++|+|++|.++ .+|..++.+++|+.|++++|.....+|.. ++++++|++|++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~-l~~L~~L~~L~L 497 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPES-LGQLTSLRILNL 497 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchH-HhcCCCCCEEEC
Confidence 47889999999876 788999999999999999987 88989999999999999996544567765 899999999999
Q ss_pred cCCcccceecCCCCCCcccccC-CCCCCeEEEecCCC
Q 003193 358 GNSFTQWKVEGQSNASLGELKQ-LSRLTTLEVHIPDA 393 (840)
Q Consensus 358 ~~~~~~~~~~~~~~~~l~~l~~-l~~L~~L~l~~~~~ 393 (840)
++|.+...++ ..+.. ..++..+++.+|..
T Consensus 498 s~N~l~g~iP-------~~l~~~~~~~~~l~~~~N~~ 527 (623)
T PLN03150 498 NGNSLSGRVP-------AALGGRLLHRASFNFTDNAG 527 (623)
T ss_pred cCCcccccCC-------hHHhhccccCceEEecCCcc
Confidence 9998765444 33333 23566788877653
|
|
| >PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A | Back alignment and domain information |
|---|
Probab=98.39 E-value=2.6e-07 Score=70.40 Aligned_cols=55 Identities=31% Similarity=0.459 Sum_probs=24.6
Q ss_pred CCcEEEcCCCCCCCCC-hhhcCCCCCCEEEccCCccCC--cccccCCCCCCEEeecCC
Q 003193 258 ELRVLDLTGFRFHSLP-SSLGCLINLRTLSLENCLVVD--VAIIGDLKKLEILSLKHS 312 (840)
Q Consensus 258 ~Lr~L~l~~~~~~~lp-~~l~~l~~L~~L~L~~~~~~~--~~~i~~L~~L~~L~l~~~ 312 (840)
+|++|++++|.++.+| ..|.++++|++|++++|.+.. +..+.++++|++|++++|
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCC
Confidence 3444444444444443 233444444444444444443 233444444444444444
|
... |
| >PRK15386 type III secretion protein GogB; Provisional | Back alignment and domain information |
|---|
Probab=98.35 E-value=9.6e-07 Score=92.45 Aligned_cols=37 Identities=16% Similarity=0.372 Sum_probs=16.6
Q ss_pred CCccEEEEecCCCcccccchhHHhhcccccEEEEeccccccee
Q 003193 532 SNLRIIKVEGCHRVKHLFPFSLVKNLLQLQKVKVTDCTNLKLI 574 (840)
Q Consensus 532 ~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~i~~c~~l~~~ 574 (840)
++++.|++++| .++.+|. -.++|++|.+.+|..+..+
T Consensus 52 ~~l~~L~Is~c-~L~sLP~-----LP~sLtsL~Lsnc~nLtsL 88 (426)
T PRK15386 52 RASGRLYIKDC-DIESLPV-----LPNELTEITIENCNNLTTL 88 (426)
T ss_pred cCCCEEEeCCC-CCcccCC-----CCCCCcEEEccCCCCcccC
Confidence 44445555554 4444431 1124555555555554443
|
|
| >PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A | Back alignment and domain information |
|---|
Probab=98.31 E-value=5.9e-07 Score=68.44 Aligned_cols=58 Identities=36% Similarity=0.556 Sum_probs=35.4
Q ss_pred CCCEEeecCCCCcccCh-hhcCCCCCCEEEccCCCCCCccCcccccCCCCCcEEEccCCc
Q 003193 303 KLEILSLKHSSIEQLPR-EIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGNSF 361 (840)
Q Consensus 303 ~L~~L~l~~~~l~~lp~-~i~~L~~L~~L~L~~~~~l~~~p~~~l~~L~~L~~L~l~~~~ 361 (840)
+|++|++++|+++.+|. .+..+++|++|++++ +.++.++++.+..+++|++|++++|.
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~-N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSN-NNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETS-SSESEEETTTTTTSTTESEEEETSSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccC-CccCccCHHHHcCCCCCCEEeCcCCc
Confidence 45666666666666653 445666666666665 55666666556666666666666553
|
... |
| >PRK15386 type III secretion protein GogB; Provisional | Back alignment and domain information |
|---|
Probab=98.24 E-value=2.3e-06 Score=89.70 Aligned_cols=42 Identities=12% Similarity=0.180 Sum_probs=33.0
Q ss_pred hhcccccEEEEecccccceeeccccccccccCCccccccccccceeecccCcccccccC
Q 003193 555 KNLLQLQKVKVTDCTNLKLIVGKESENSAHKNGSISGVYFRKLHFLKLQHLPQLTSSGF 613 (840)
Q Consensus 555 ~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~c~~L~~~~~ 613 (840)
..+.+++.|+|++| .++.++. ..++|++|.+.+|.+++.++.
T Consensus 49 ~~~~~l~~L~Is~c-~L~sLP~----------------LP~sLtsL~Lsnc~nLtsLP~ 90 (426)
T PRK15386 49 EEARASGRLYIKDC-DIESLPV----------------LPNELTEITIENCNNLTTLPG 90 (426)
T ss_pred HHhcCCCEEEeCCC-CCcccCC----------------CCCCCcEEEccCCCCcccCCc
Confidence 44688999999999 6776651 234799999999999988765
|
|
| >KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.08 E-value=3.6e-07 Score=100.33 Aligned_cols=128 Identities=27% Similarity=0.368 Sum_probs=91.9
Q ss_pred CCCcceeEeeccCccccCCCchhhcCCCCCcEEEcCCCCCCCCChhhcCCCCCCEEEccCCccCCcccccCCCCCCEEee
Q 003193 230 GFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPSSLGCLINLRTLSLENCLVVDVAIIGDLKKLEILSL 309 (840)
Q Consensus 230 ~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~~i~~L~~L~~L~l 309 (840)
.+..+..+.+..|.+.. + ..-...+++|.+|++.+|.+..+...+..+++|++|++++|.|+....+..+..|+.|++
T Consensus 70 ~l~~l~~l~l~~n~i~~-~-~~~l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~~l~~l~~L~~L~l 147 (414)
T KOG0531|consen 70 SLTSLKELNLRQNLIAK-I-LNHLSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLEGLSTLTLLKELNL 147 (414)
T ss_pred HhHhHHhhccchhhhhh-h-hcccccccceeeeeccccchhhcccchhhhhcchheeccccccccccchhhccchhhhee
Confidence 34555556666665542 1 121367788888888888888776557788888888888888888888888888888888
Q ss_pred cCCCCcccChhhcCCCCCCEEEccCCCCCCccCc-ccccCCCCCcEEEccCCcc
Q 003193 310 KHSSIEQLPREIGQLTCLKLLDLSNCSKLKEIRP-NVISNLTRLEELYMGNSFT 362 (840)
Q Consensus 310 ~~~~l~~lp~~i~~L~~L~~L~L~~~~~l~~~p~-~~l~~L~~L~~L~l~~~~~ 362 (840)
.+|.|+.++ .+..+++|+.+++++ +.+..+.. . ...+.+++.+++.+|.+
T Consensus 148 ~~N~i~~~~-~~~~l~~L~~l~l~~-n~i~~ie~~~-~~~~~~l~~l~l~~n~i 198 (414)
T KOG0531|consen 148 SGNLISDIS-GLESLKSLKLLDLSY-NRIVDIENDE-LSELISLEELDLGGNSI 198 (414)
T ss_pred ccCcchhcc-CCccchhhhcccCCc-chhhhhhhhh-hhhccchHHHhccCCch
Confidence 888888775 355588888888888 55666654 1 36677788787777754
|
|
| >KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.08 E-value=1.5e-06 Score=99.28 Aligned_cols=126 Identities=21% Similarity=0.251 Sum_probs=86.8
Q ss_pred ccCCCcEEEeccCCc--ccCCccc--CCCcceeEeeccCccccCCCchhhcCCCCCcEEEcCCCCCCCCChhhcCCCCCC
Q 003193 208 IDEAPTAISIPFRGI--YELPERL--GFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPSSLGCLINLR 283 (840)
Q Consensus 208 ~~~~l~~L~l~~~~~--~~l~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~l~~l~~L~ 283 (840)
...++++|++++... ..-+..+ .+|.|++|.+.+-.+...--..++.++++|+.||+++++++.+ .++++|++|+
T Consensus 120 sr~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq 198 (699)
T KOG3665|consen 120 SRQNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQ 198 (699)
T ss_pred HHHhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHHhccccHH
Confidence 345688888877543 1122222 5889999998876554332334567888999999999998888 6888999999
Q ss_pred EEEccCCccCC---cccccCCCCCCEEeecCCCCcccChh-------hcCCCCCCEEEccC
Q 003193 284 TLSLENCLVVD---VAIIGDLKKLEILSLKHSSIEQLPRE-------IGQLTCLKLLDLSN 334 (840)
Q Consensus 284 ~L~L~~~~~~~---~~~i~~L~~L~~L~l~~~~l~~lp~~-------i~~L~~L~~L~L~~ 334 (840)
+|.+.+-.+.. ...+.+|++|++||+|..+-..-+.- -..|++||.||.++
T Consensus 199 ~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSg 259 (699)
T KOG3665|consen 199 VLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSG 259 (699)
T ss_pred HHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCC
Confidence 99888877665 46778888888888887644433311 12366666666665
|
|
| >KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.07 E-value=4.3e-07 Score=99.69 Aligned_cols=172 Identities=21% Similarity=0.280 Sum_probs=121.7
Q ss_pred CCCcEEEeccCCcccCCc-ccCCCcceeEeeccCccccCCCchhhcCCCCCcEEEcCCCCCCCCChhhcCCCCCCEEEcc
Q 003193 210 EAPTAISIPFRGIYELPE-RLGFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPSSLGCLINLRTLSLE 288 (840)
Q Consensus 210 ~~l~~L~l~~~~~~~l~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~l~~l~~L~~L~L~ 288 (840)
..+..+++..|.+..+.. ...+.+|..+++.+|.+... ... +..+.+|++|++++|.|+.+. .+..+..|+.|+++
T Consensus 72 ~~l~~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n~i~~i-~~~-l~~~~~L~~L~ls~N~I~~i~-~l~~l~~L~~L~l~ 148 (414)
T KOG0531|consen 72 TSLKELNLRQNLIAKILNHLSKLKSLEALDLYDNKIEKI-ENL-LSSLVNLQVLDLSFNKITKLE-GLSTLTLLKELNLS 148 (414)
T ss_pred HhHHhhccchhhhhhhhcccccccceeeeeccccchhhc-ccc-hhhhhcchheecccccccccc-chhhccchhhheec
Confidence 344555577777765333 33688999999998887632 221 367889999999999998874 57788889999999
Q ss_pred CCccCCcccccCCCCCCEEeecCCCCcccChh-hcCCCCCCEEEccCCCCCCccCcccccCCCCCcEEEccCCcccceec
Q 003193 289 NCLVVDVAIIGDLKKLEILSLKHSSIEQLPRE-IGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGNSFTQWKVE 367 (840)
Q Consensus 289 ~~~~~~~~~i~~L~~L~~L~l~~~~l~~lp~~-i~~L~~L~~L~L~~~~~l~~~p~~~l~~L~~L~~L~l~~~~~~~~~~ 367 (840)
+|.+.....+..+.+|+.+++++|.++.+... ...+.+|+.+++.+ +.+..+.. +..+..+..+++..|.+..
T Consensus 149 ~N~i~~~~~~~~l~~L~~l~l~~n~i~~ie~~~~~~~~~l~~l~l~~-n~i~~i~~--~~~~~~l~~~~l~~n~i~~--- 222 (414)
T KOG0531|consen 149 GNLISDISGLESLKSLKLLDLSYNRIVDIENDELSELISLEELDLGG-NSIREIEG--LDLLKKLVLLSLLDNKISK--- 222 (414)
T ss_pred cCcchhccCCccchhhhcccCCcchhhhhhhhhhhhccchHHHhccC-Cchhcccc--hHHHHHHHHhhccccccee---
Confidence 99999888888899999999999998888764 57888999999888 55655543 4555555555666654421
Q ss_pred CCCCCCcccccCCCC--CCeEEEecCCCCCC
Q 003193 368 GQSNASLGELKQLSR--LTTLEVHIPDAQVM 396 (840)
Q Consensus 368 ~~~~~~l~~l~~l~~--L~~L~l~~~~~~~~ 396 (840)
+..+..+.. |+.+++..+.+...
T Consensus 223 ------~~~l~~~~~~~L~~l~l~~n~i~~~ 247 (414)
T KOG0531|consen 223 ------LEGLNELVMLHLRELYLSGNRISRS 247 (414)
T ss_pred ------ccCcccchhHHHHHHhcccCccccc
Confidence 122222222 67777777766554
|
|
| >KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.07 E-value=9.6e-08 Score=92.41 Aligned_cols=84 Identities=31% Similarity=0.383 Sum_probs=41.8
Q ss_pred CCcEEEcCCCCCC--CCChhhcCCCCCCEEEccCCccCCcccccCCCCCCEEeecCCCCcccChhhcCCCCCCEEEccCC
Q 003193 258 ELRVLDLTGFRFH--SLPSSLGCLINLRTLSLENCLVVDVAIIGDLKKLEILSLKHSSIEQLPREIGQLTCLKLLDLSNC 335 (840)
Q Consensus 258 ~Lr~L~l~~~~~~--~lp~~l~~l~~L~~L~L~~~~~~~~~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~L~~~ 335 (840)
.|++|||++..++ .+-.-+..+..|+.|.+.++.+.+ .+-..|.+=.+|+.|+++.|
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD---------------------~I~~~iAkN~~L~~lnlsm~ 244 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDD---------------------PIVNTIAKNSNLVRLNLSMC 244 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCc---------------------HHHHHHhccccceeeccccc
Confidence 3555566555554 233334444455555555544444 22233444455555666555
Q ss_pred CCCCccCcc-cccCCCCCcEEEccCCcc
Q 003193 336 SKLKEIRPN-VISNLTRLEELYMGNSFT 362 (840)
Q Consensus 336 ~~l~~~p~~-~l~~L~~L~~L~l~~~~~ 362 (840)
+.+++.... .+.+++.|+.|++++|..
T Consensus 245 sG~t~n~~~ll~~scs~L~~LNlsWc~l 272 (419)
T KOG2120|consen 245 SGFTENALQLLLSSCSRLDELNLSWCFL 272 (419)
T ss_pred cccchhHHHHHHHhhhhHhhcCchHhhc
Confidence 555443221 245566666666666643
|
|
| >KOG1859 consensus Leucine-rich repeat proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.05 E-value=4.3e-08 Score=105.72 Aligned_cols=176 Identities=20% Similarity=0.155 Sum_probs=123.2
Q ss_pred ccCCCcEEEeccCCcccCCcccC-CCcceeEeeccCc---------cccCCCchhhcCCCCCcEEEcCCCCCCCCChhhc
Q 003193 208 IDEAPTAISIPFRGIYELPERLG-FLKLKLFLFFTEN---------LSLQIPDPFFEGMTELRVLDLTGFRFHSLPSSLG 277 (840)
Q Consensus 208 ~~~~l~~L~l~~~~~~~l~~~~~-~~~L~~L~l~~~~---------~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~l~ 277 (840)
..+.+|+|-+.+++++....... -..|+.|...+.- ..+.+..++ ....|.+-+.++|.+..+-.++.
T Consensus 107 pF~sLr~LElrg~~L~~~~GL~~lr~qLe~LIC~~Sl~Al~~v~ascggd~~ns~--~Wn~L~~a~fsyN~L~~mD~SLq 184 (1096)
T KOG1859|consen 107 PFRSLRVLELRGCDLSTAKGLQELRHQLEKLICHNSLDALRHVFASCGGDISNSP--VWNKLATASFSYNRLVLMDESLQ 184 (1096)
T ss_pred cccceeeEEecCcchhhhhhhHHHHHhhhhhhhhccHHHHHHHHHHhccccccch--hhhhHhhhhcchhhHHhHHHHHH
Confidence 35678888888888765332222 2234444443211 011111111 23467888889998888888888
Q ss_pred CCCCCCEEEccCCccCCcccccCCCCCCEEeecCCCCcccChh-hcCCCCCCEEEccCCCCCCccCcccccCCCCCcEEE
Q 003193 278 CLINLRTLSLENCLVVDVAIIGDLKKLEILSLKHSSIEQLPRE-IGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELY 356 (840)
Q Consensus 278 ~l~~L~~L~L~~~~~~~~~~i~~L~~L~~L~l~~~~l~~lp~~-i~~L~~L~~L~L~~~~~l~~~p~~~l~~L~~L~~L~ 356 (840)
-+++|+.|+|++|++.+...+..+.+|++|||++|.++.+|.- ...+ +|+.|.+++ |.++.+-. +.+|++|+.|+
T Consensus 185 ll~ale~LnLshNk~~~v~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc-~L~~L~lrn-N~l~tL~g--ie~LksL~~LD 260 (1096)
T KOG1859|consen 185 LLPALESLNLSHNKFTKVDNLRRLPKLKHLDLSYNCLRHVPQLSMVGC-KLQLLNLRN-NALTTLRG--IENLKSLYGLD 260 (1096)
T ss_pred HHHHhhhhccchhhhhhhHHHHhcccccccccccchhccccccchhhh-hheeeeecc-cHHHhhhh--HHhhhhhhccc
Confidence 8999999999999999977899999999999999999988852 2223 499999998 67877754 78999999999
Q ss_pred ccCCcccceecCCCCCCcccccCCCCCCeEEEecCCCCC
Q 003193 357 MGNSFTQWKVEGQSNASLGELKQLSRLTTLEVHIPDAQV 395 (840)
Q Consensus 357 l~~~~~~~~~~~~~~~~l~~l~~l~~L~~L~l~~~~~~~ 395 (840)
+++|-+... ..+.-|..|..|+.|.+.+|.+..
T Consensus 261 lsyNll~~h------seL~pLwsLs~L~~L~LeGNPl~c 293 (1096)
T KOG1859|consen 261 LSYNLLSEH------SELEPLWSLSSLIVLWLEGNPLCC 293 (1096)
T ss_pred hhHhhhhcc------hhhhHHHHHHHHHHHhhcCCcccc
Confidence 998865421 233445566678888888887643
|
|
| >PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B | Back alignment and domain information |
|---|
Probab=98.01 E-value=6.3e-06 Score=57.24 Aligned_cols=37 Identities=41% Similarity=0.542 Sum_probs=18.0
Q ss_pred CCcEEEcCCCCCCCCChhhcCCCCCCEEEccCCccCC
Q 003193 258 ELRVLDLTGFRFHSLPSSLGCLINLRTLSLENCLVVD 294 (840)
Q Consensus 258 ~Lr~L~l~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~ 294 (840)
+|++|++++|.++.+|+.+++|++|++|++++|++++
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~ 38 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISD 38 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSB
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCC
Confidence 4555555555555555445555555555555554443
|
... |
| >PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B | Back alignment and domain information |
|---|
Probab=97.93 E-value=1.4e-05 Score=55.45 Aligned_cols=38 Identities=39% Similarity=0.631 Sum_probs=19.6
Q ss_pred CCCEEeecCCCCcccChhhcCCCCCCEEEccCCCCCCcc
Q 003193 303 KLEILSLKHSSIEQLPREIGQLTCLKLLDLSNCSKLKEI 341 (840)
Q Consensus 303 ~L~~L~l~~~~l~~lp~~i~~L~~L~~L~L~~~~~l~~~ 341 (840)
+|++|++++|+|+.+|..+++|++|++|++++ +.++++
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~-N~i~~i 39 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSN-NPISDI 39 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETS-SCCSBE
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecC-CCCCCC
Confidence 45555555555555555555555555555555 344444
|
... |
| >KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.86 E-value=4.2e-07 Score=88.12 Aligned_cols=173 Identities=23% Similarity=0.189 Sum_probs=124.2
Q ss_pred CCCcEEEeccCCccc--CCccc-CCCcceeEeeccCccccCCCchhhcCCCCCcEEEcCCCC-CCC--CChhhcCCCCCC
Q 003193 210 EAPTAISIPFRGIYE--LPERL-GFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFR-FHS--LPSSLGCLINLR 283 (840)
Q Consensus 210 ~~l~~L~l~~~~~~~--l~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~-~~~--lp~~l~~l~~L~ 283 (840)
..+++++++...++. +.... .|.+|+.|.+.++.....+-..+ .+-.+|+.|+++.+. +++ +.--+.+++.|.
T Consensus 185 sRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~i-AkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~ 263 (419)
T KOG2120|consen 185 SRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTI-AKNSNLVRLNLSMCSGFTENALQLLLSSCSRLD 263 (419)
T ss_pred hhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHH-hccccceeeccccccccchhHHHHHHHhhhhHh
Confidence 457889998877632 22222 68899999999888776555554 677899999999886 442 233467899999
Q ss_pred EEEccCCccCCc------ccccCCCCCCEEeecCCC--C--cccChhhcCCCCCCEEEccCCCCCCccCcccccCCCCCc
Q 003193 284 TLSLENCLVVDV------AIIGDLKKLEILSLKHSS--I--EQLPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLE 353 (840)
Q Consensus 284 ~L~L~~~~~~~~------~~i~~L~~L~~L~l~~~~--l--~~lp~~i~~L~~L~~L~L~~~~~l~~~p~~~l~~L~~L~ 353 (840)
.|++++|.+..+ ..|+ .+|..|+++|+. + ..+..-..++++|.+|||++|..++.--...+.+++.|+
T Consensus 264 ~LNlsWc~l~~~~Vtv~V~his--e~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~ 341 (419)
T KOG2120|consen 264 ELNLSWCFLFTEKVTVAVAHIS--ETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQ 341 (419)
T ss_pred hcCchHhhccchhhhHHHhhhc--hhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchhe
Confidence 999999986652 2222 468888999872 2 233333578899999999998877764344478899999
Q ss_pred EEEccCCcccceecCCCCCCcccccCCCCCCeEEEecC
Q 003193 354 ELYMGNSFTQWKVEGQSNASLGELKQLSRLTTLEVHIP 391 (840)
Q Consensus 354 ~L~l~~~~~~~~~~~~~~~~l~~l~~l~~L~~L~l~~~ 391 (840)
+|.++.|... .+..+-+++..+.|.+|++.+.
T Consensus 342 ~lSlsRCY~i------~p~~~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 342 HLSLSRCYDI------IPETLLELNSKPSLVYLDVFGC 373 (419)
T ss_pred eeehhhhcCC------ChHHeeeeccCcceEEEEeccc
Confidence 9999998642 2345567788888888888753
|
|
| >KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.72 E-value=2.8e-06 Score=96.36 Aligned_cols=118 Identities=14% Similarity=0.072 Sum_probs=70.1
Q ss_pred Hhcccceeecccccccccc--ccccchhhcccccEEEeecC-CCeEEEEeC-CCccccccccceeecccccccccccccc
Q 003193 446 LKRTEDLHLDELAGFKNVV--HELDDEEGFARLRHLHVHNG-PEILHILNS-DGRVGTFPLLESLFLHNLINLEKVCDGK 521 (840)
Q Consensus 446 l~~L~~L~L~~~~~~~~~~--~~l~~~~~l~~L~~L~l~~~-~~l~~~~~~-~~~~~~~~~L~~L~l~~~~~L~~~~~~~ 521 (840)
.++|+.|.+.++....... ... ...++|+.|++.++ ......... ......+++|+.|.+..+..+.+.....
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~---~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~ 263 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALA---LKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSA 263 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHH---hhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHH
Confidence 4677888888776655421 222 56788888888773 211111100 0112445777777777776544432211
Q ss_pred cccCCCCcccCCccEEEEecCCCcccccchhHHhhcccccEEEEeccccc
Q 003193 522 VRLNEDDKSFSNLRIIKVEGCHRVKHLFPFSLVKNLLQLQKVKVTDCTNL 571 (840)
Q Consensus 522 ~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~i~~c~~l 571 (840)
+ ...+++|+.|.+.+|..+++..-......+++|++|++++|..+
T Consensus 264 l-----~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~ 308 (482)
T KOG1947|consen 264 L-----ASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGL 308 (482)
T ss_pred H-----HhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccc
Confidence 1 12367888888777877665544445567777888888887776
|
|
| >KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.68 E-value=2.5e-05 Score=89.52 Aligned_cols=104 Identities=24% Similarity=0.334 Sum_probs=65.3
Q ss_pred CCcceeEeeccCcc-ccCCCchhhcCCCCCcEEEcCCCCCC--CCChhhcCCCCCCEEEccCCccCCcccccCCCCCCEE
Q 003193 231 FLKLKLFLFFTENL-SLQIPDPFFEGMTELRVLDLTGFRFH--SLPSSLGCLINLRTLSLENCLVVDVAIIGDLKKLEIL 307 (840)
Q Consensus 231 ~~~L~~L~l~~~~~-~~~~~~~~~~~l~~Lr~L~l~~~~~~--~lp~~l~~l~~L~~L~L~~~~~~~~~~i~~L~~L~~L 307 (840)
-.+|+.|++.+... ....|..+...+|.||.|.+++-.+. .+-.-..++++|+.||+++++++....+++|++||+|
T Consensus 121 r~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl~GIS~LknLq~L 200 (699)
T KOG3665|consen 121 RQNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNLSGISRLKNLQVL 200 (699)
T ss_pred HHhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCcHHHhccccHHHH
Confidence 45677777766542 23345555566777777777776553 2233445667777777777777777777777777777
Q ss_pred eecCCCCcccC--hhhcCCCCCCEEEccC
Q 003193 308 SLKHSSIEQLP--REIGQLTCLKLLDLSN 334 (840)
Q Consensus 308 ~l~~~~l~~lp--~~i~~L~~L~~L~L~~ 334 (840)
.+.+=.+..-. ..+.+|++|++||++.
T Consensus 201 ~mrnLe~e~~~~l~~LF~L~~L~vLDIS~ 229 (699)
T KOG3665|consen 201 SMRNLEFESYQDLIDLFNLKKLRVLDISR 229 (699)
T ss_pred hccCCCCCchhhHHHHhcccCCCeeeccc
Confidence 77654444222 3456677777777766
|
|
| >KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.66 E-value=5.9e-06 Score=82.45 Aligned_cols=181 Identities=14% Similarity=0.122 Sum_probs=113.9
Q ss_pred CCcEEEeccCCcc--cCCc---cc-CCCcceeEeeccCccccCCC------------chhhcCCCCCcEEEcCCCCCCCC
Q 003193 211 APTAISIPFRGIY--ELPE---RL-GFLKLKLFLFFTENLSLQIP------------DPFFEGMTELRVLDLTGFRFHSL 272 (840)
Q Consensus 211 ~l~~L~l~~~~~~--~l~~---~~-~~~~L~~L~l~~~~~~~~~~------------~~~~~~l~~Lr~L~l~~~~~~~l 272 (840)
+++.++++.|.+. .++. .+ .+..|+.|.+.+|.+...-- ..-..+-+.||++...+|++..-
T Consensus 93 ~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ 172 (382)
T KOG1909|consen 93 KLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENG 172 (382)
T ss_pred ceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccc
Confidence 6788888888773 2222 12 57788888887776431100 01123456788888888887643
Q ss_pred C-----hhhcCCCCCCEEEccCCccCCc------ccccCCCCCCEEeecCCCCc-----ccChhhcCCCCCCEEEccCCC
Q 003193 273 P-----SSLGCLINLRTLSLENCLVVDV------AIIGDLKKLEILSLKHSSIE-----QLPREIGQLTCLKLLDLSNCS 336 (840)
Q Consensus 273 p-----~~l~~l~~L~~L~L~~~~~~~~------~~i~~L~~L~~L~l~~~~l~-----~lp~~i~~L~~L~~L~L~~~~ 336 (840)
+ ..+...+.|+.+.+..|.+... ..+..+++|+.|||+.|-++ .+...+..+++|+.|++++|.
T Consensus 173 ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcl 252 (382)
T KOG1909|consen 173 GATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCL 252 (382)
T ss_pred cHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccc
Confidence 3 3466677888888888876652 45678888888888888666 344556677888888888874
Q ss_pred CCCc----cCcccccCCCCCcEEEccCCcccceecCCCCCCcccccCCCCCCeEEEecCCCC
Q 003193 337 KLKE----IRPNVISNLTRLEELYMGNSFTQWKVEGQSNASLGELKQLSRLTTLEVHIPDAQ 394 (840)
Q Consensus 337 ~l~~----~p~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~l~~L~~L~l~~~~~~ 394 (840)
--.. +-...-...++|++|.+.+|.+...... .....+...+.|..|++++|...
T Consensus 253 l~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~---~la~~~~ek~dL~kLnLngN~l~ 311 (382)
T KOG1909|consen 253 LENEGAIAFVDALKESAPSLEVLELAGNEITRDAAL---ALAACMAEKPDLEKLNLNGNRLG 311 (382)
T ss_pred cccccHHHHHHHHhccCCCCceeccCcchhHHHHHH---HHHHHHhcchhhHHhcCCccccc
Confidence 2221 1111113367888888888866532211 11122334678888888888764
|
|
| >KOG1859 consensus Leucine-rich repeat proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.64 E-value=1.2e-06 Score=95.06 Aligned_cols=123 Identities=19% Similarity=0.166 Sum_probs=60.3
Q ss_pred cCCCcEEEeccCCcccCCccc-CCCcceeEeeccCccccCCCchhhcCCCCCcEEEcCCCCCCCCChhhcCCCCCCEEEc
Q 003193 209 DEAPTAISIPFRGIYELPERL-GFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPSSLGCLINLRTLSL 287 (840)
Q Consensus 209 ~~~l~~L~l~~~~~~~l~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~l~~l~~L~~L~L 287 (840)
+.++...++++|.+..+.... -++.++.|+++.|.+... +++..+.+|+.|||++|.+..+|.-=..--+|+.|.+
T Consensus 163 Wn~L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~~v---~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~L~~L~l 239 (1096)
T KOG1859|consen 163 WNKLATASFSYNRLVLMDESLQLLPALESLNLSHNKFTKV---DNLRRLPKLKHLDLSYNCLRHVPQLSMVGCKLQLLNL 239 (1096)
T ss_pred hhhHhhhhcchhhHHhHHHHHHHHHHhhhhccchhhhhhh---HHHHhcccccccccccchhccccccchhhhhheeeee
Confidence 334555555555554444433 245555666655554421 1235555566666666655555431111112555555
Q ss_pred cCCccCCcccccCCCCCCEEeecCCCCcccC--hhhcCCCCCCEEEccC
Q 003193 288 ENCLVVDVAIIGDLKKLEILSLKHSSIEQLP--REIGQLTCLKLLDLSN 334 (840)
Q Consensus 288 ~~~~~~~~~~i~~L~~L~~L~l~~~~l~~lp--~~i~~L~~L~~L~L~~ 334 (840)
++|.++....|.+|++|+.||+++|-+.... .-++.|..|+.|.|.+
T Consensus 240 rnN~l~tL~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeG 288 (1096)
T KOG1859|consen 240 RNNALTTLRGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEG 288 (1096)
T ss_pred cccHHHhhhhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcC
Confidence 5555555555555555555555555433211 1134455555555555
|
|
| >KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.61 E-value=5.9e-06 Score=70.89 Aligned_cols=107 Identities=15% Similarity=0.237 Sum_probs=63.2
Q ss_pred cEEEeccCCcccCCccc----CCCcceeEeeccCccccCCCchhhcCCCCCcEEEcCCCCCCCCChhhcCCCCCCEEEcc
Q 003193 213 TAISIPFRGIYELPERL----GFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPSSLGCLINLRTLSLE 288 (840)
Q Consensus 213 ~~L~l~~~~~~~l~~~~----~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~l~~l~~L~~L~L~ 288 (840)
..++++.+.+..+++.. +..+|...++++|.+. ..|+.+-.+++....|++++|.++.+|..+..++.||.|+++
T Consensus 30 h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~ 108 (177)
T KOG4579|consen 30 HFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLR 108 (177)
T ss_pred hhcccccchhhHHHHHHHHHhCCceEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcccc
Confidence 34555555554443321 4455555666666554 455555556666666666666666666666666666666666
Q ss_pred CCccCC-cccccCCCCCCEEeecCCCCcccChh
Q 003193 289 NCLVVD-VAIIGDLKKLEILSLKHSSIEQLPRE 320 (840)
Q Consensus 289 ~~~~~~-~~~i~~L~~L~~L~l~~~~l~~lp~~ 320 (840)
.|.+.. |..|..|.+|-+|+..+|.+.++|-.
T Consensus 109 ~N~l~~~p~vi~~L~~l~~Lds~~na~~eid~d 141 (177)
T KOG4579|consen 109 FNPLNAEPRVIAPLIKLDMLDSPENARAEIDVD 141 (177)
T ss_pred cCccccchHHHHHHHhHHHhcCCCCccccCcHH
Confidence 666655 55555666666666666655555543
|
|
| >KOG2982 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.54 E-value=1.6e-05 Score=77.38 Aligned_cols=64 Identities=23% Similarity=0.320 Sum_probs=29.8
Q ss_pred hcCCCCCCEEEccCCCCCCccCcccc-cCCCCCcEEEccCCcccceecCCCCCCcccccCCCCCCeEEEecCC
Q 003193 321 IGQLTCLKLLDLSNCSKLKEIRPNVI-SNLTRLEELYMGNSFTQWKVEGQSNASLGELKQLSRLTTLEVHIPD 392 (840)
Q Consensus 321 i~~L~~L~~L~L~~~~~l~~~p~~~l-~~L~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~l~~L~~L~l~~~~ 392 (840)
+.+|+.|++|+++. +.+...... + ..+.+|++|-+.+....|... -..+..++.++.|+++.|.
T Consensus 93 le~lP~l~~LNls~-N~L~s~I~~-lp~p~~nl~~lVLNgT~L~w~~~------~s~l~~lP~vtelHmS~N~ 157 (418)
T KOG2982|consen 93 LEQLPALTTLNLSC-NSLSSDIKS-LPLPLKNLRVLVLNGTGLSWTQS------TSSLDDLPKVTELHMSDNS 157 (418)
T ss_pred HhcCccceEeeccC-CcCCCcccc-CcccccceEEEEEcCCCCChhhh------hhhhhcchhhhhhhhccch
Confidence 34555555555554 222221111 1 133566666666655544321 1334555666666666553
|
|
| >KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.00016 Score=66.75 Aligned_cols=81 Identities=27% Similarity=0.361 Sum_probs=44.2
Q ss_pred cCCCCCcEEEcCCCCCCCCChhhcC-CCCCCEEEccCCccCC---cccccCCCCCCEEeecCCCCcccCh----hhcCCC
Q 003193 254 EGMTELRVLDLTGFRFHSLPSSLGC-LINLRTLSLENCLVVD---VAIIGDLKKLEILSLKHSSIEQLPR----EIGQLT 325 (840)
Q Consensus 254 ~~l~~Lr~L~l~~~~~~~lp~~l~~-l~~L~~L~L~~~~~~~---~~~i~~L~~L~~L~l~~~~l~~lp~----~i~~L~ 325 (840)
..++.|.+|.+.+|+|+.+-+.+.. +++|..|.|.+|.+.. ..-+..++.|++|.+-+|.++.-+. -+.+++
T Consensus 61 p~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~klp 140 (233)
T KOG1644|consen 61 PHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLLGNPVEHKKNYRLYVLYKLP 140 (233)
T ss_pred CCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeeecCCchhcccCceeEEEEecC
Confidence 4455555555555555554333332 3346666666655444 3444555666666666665554332 256677
Q ss_pred CCCEEEccC
Q 003193 326 CLKLLDLSN 334 (840)
Q Consensus 326 ~L~~L~L~~ 334 (840)
+|++||..+
T Consensus 141 ~l~~LDF~k 149 (233)
T KOG1644|consen 141 SLRTLDFQK 149 (233)
T ss_pred cceEeehhh
Confidence 777777665
|
|
| >KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.00035 Score=64.60 Aligned_cols=100 Identities=25% Similarity=0.291 Sum_probs=57.3
Q ss_pred CCcEEEcCCCCCCCCChhhcCCCCCCEEEccCCccCC-cccc-cCCCCCCEEeecCCCCcccC--hhhcCCCCCCEEEcc
Q 003193 258 ELRVLDLTGFRFHSLPSSLGCLINLRTLSLENCLVVD-VAII-GDLKKLEILSLKHSSIEQLP--REIGQLTCLKLLDLS 333 (840)
Q Consensus 258 ~Lr~L~l~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~-~~~i-~~L~~L~~L~l~~~~l~~lp--~~i~~L~~L~~L~L~ 333 (840)
....+|+++|.+..++ .+..++.|.+|.+.+|.|+. -+.+ ..+++|..|.+.+|+|.++. ..+..+++|++|.+-
T Consensus 43 ~~d~iDLtdNdl~~l~-~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll 121 (233)
T KOG1644|consen 43 QFDAIDLTDNDLRKLD-NLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLL 121 (233)
T ss_pred ccceecccccchhhcc-cCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeeec
Confidence 4456666666666553 35566677777777777666 2233 33456777777777666553 224556666666666
Q ss_pred CCCCCCccC---cccccCCCCCcEEEccC
Q 003193 334 NCSKLKEIR---PNVISNLTRLEELYMGN 359 (840)
Q Consensus 334 ~~~~l~~~p---~~~l~~L~~L~~L~l~~ 359 (840)
+ +.+.+-. .-.+.++++|++|++..
T Consensus 122 ~-Npv~~k~~YR~yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 122 G-NPVEHKKNYRLYVLYKLPSLRTLDFQK 149 (233)
T ss_pred C-CchhcccCceeEEEEecCcceEeehhh
Confidence 5 3332221 12356667777776654
|
|
| >KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.35 E-value=3.2e-05 Score=87.74 Aligned_cols=222 Identities=21% Similarity=0.241 Sum_probs=125.9
Q ss_pred cccccceeecccccccccccccccccCCCCcccCCccEEEEecC-CCccccc--chhHHhhcccccEEEEecccccceee
Q 003193 499 TFPLLESLFLHNLINLEKVCDGKVRLNEDDKSFSNLRIIKVEGC-HRVKHLF--PFSLVKNLLQLQKVKVTDCTNLKLIV 575 (840)
Q Consensus 499 ~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~~~~~L~~L~l~~c-~~L~~l~--~~~~~~~l~~L~~L~i~~c~~l~~~~ 575 (840)
..|.|+.|.+.+|..+.......+ ....+.|+.|++..| ......+ .......+++|+.|++..|..+.+..
T Consensus 186 ~~~~L~~l~l~~~~~~~~~~~~~~-----~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~ 260 (482)
T KOG1947|consen 186 SCPLLKRLSLSGCSKITDDSLDAL-----ALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIG 260 (482)
T ss_pred hCchhhHhhhcccccCChhhHHHH-----HhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchh
Confidence 478888888888877765321111 346788888888873 3322221 12344567888888888887654443
Q ss_pred ccccccccccCCccccccccccceeecccCcccccccCCCCCCCccCCCCCcccccCCCCCcccccccccccCCcceEec
Q 003193 576 GKESENSAHKNGSISGVYFRKLHFLKLQHLPQLTSSGFDLETPTNTQGSNPGIIAEGDPKDFTSLFNERVVFPSLKKLKL 655 (840)
Q Consensus 576 ~~~~~~~~~~~~~~~l~~l~~L~~L~l~~c~~L~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~l~~L~~L~l 655 (840)
.... ...+|+|+.|.+.+|+.++.-. +......+++|++|+|
T Consensus 261 l~~l-----------~~~c~~L~~L~l~~c~~lt~~g---------------------------l~~i~~~~~~L~~L~l 302 (482)
T KOG1947|consen 261 LSAL-----------ASRCPNLETLSLSNCSNLTDEG---------------------------LVSIAERCPSLRELDL 302 (482)
T ss_pred HHHH-----------HhhCCCcceEccCCCCccchhH---------------------------HHHHHHhcCcccEEee
Confidence 2111 1137788888888887654421 1122245788999999
Q ss_pred ccc-cchhhcccCCccccccCCCceEEEecc---cCCcceeechhhHhhh-cccceeeecccccchhhhccCcccccCcc
Q 003193 656 SSI-NVEKIWLNSFSAIESWGKNLTKLTVEK---CGRLKFLFSSSMVNGL-EQLQQLDISHCKSMNEVINTRVGRDDNMI 730 (840)
Q Consensus 656 ~~c-~l~~~~~~~~~~~~~~l~~L~~L~i~~---C~~L~~l~~~~~~~~l-~sL~~L~i~~C~~L~~i~~~~~~~~~~~~ 730 (840)
++| .+++-..... ...+++|+.|.+.. |+.++.+......... ..+..+.+.+|++++.+.. ....
T Consensus 303 ~~c~~~~d~~l~~~---~~~c~~l~~l~~~~~~~c~~l~~~~l~~~~~~~~d~~~~~~~~~~~~l~~~~l--~~~~---- 373 (482)
T KOG1947|consen 303 SGCHGLTDSGLEAL---LKNCPNLRELKLLSLNGCPSLTDLSLSGLLTLTSDDLAELILRSCPKLTDLSL--SYCG---- 373 (482)
T ss_pred ecCccchHHHHHHH---HHhCcchhhhhhhhcCCCccHHHHHHHHhhccCchhHhHHHHhcCCCcchhhh--hhhh----
Confidence 988 5533211111 12356555554444 4456655221111112 2678888888888876632 1100
Q ss_pred cccccccc-ccccccCCcce-eecCCCCccCCCcceEEeccCCCccee
Q 003193 731 EMVFPKLV-SLQLSHLPKLT-RFGIGDSVEFPSLCQLQIACCPNLKIF 776 (840)
Q Consensus 731 ~~~l~sL~-~L~i~~c~~L~-~l~~~~~~~l~sL~~L~i~~C~~L~~l 776 (840)
..... .+.+.+|++|+ .+... .....+|+.|.+..|......
T Consensus 374 ---~~~~~~~~~l~gc~~l~~~l~~~-~~~~~~l~~L~l~~~~~~t~~ 417 (482)
T KOG1947|consen 374 ---ISDLGLELSLRGCPNLTESLELR-LCRSDSLRVLNLSDCRLVTDK 417 (482)
T ss_pred ---ccCcchHHHhcCCcccchHHHHH-hccCCccceEecccCcccccc
Confidence 11222 56778888883 33211 113344899999999866554
|
|
| >KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.18 E-value=6.5e-05 Score=64.69 Aligned_cols=90 Identities=24% Similarity=0.319 Sum_probs=62.3
Q ss_pred cCCCCCcEEEcCCCCCCCCChhhcCC-CCCCEEEccCCccCC-cccccCCCCCCEEeecCCCCcccChhhcCCCCCCEEE
Q 003193 254 EGMTELRVLDLTGFRFHSLPSSLGCL-INLRTLSLENCLVVD-VAIIGDLKKLEILSLKHSSIEQLPREIGQLTCLKLLD 331 (840)
Q Consensus 254 ~~l~~Lr~L~l~~~~~~~lp~~l~~l-~~L~~L~L~~~~~~~-~~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~ 331 (840)
.+..+|...++++|.+..+|+.|... +.+..|++++|.+.+ |..+..++.|+.|+++.|.+...|.-|..|.+|-.|+
T Consensus 50 ~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~N~l~~~p~vi~~L~~l~~Ld 129 (177)
T KOG4579|consen 50 SKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLRFNPLNAEPRVIAPLIKLDMLD 129 (177)
T ss_pred hCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcccccCccccchHHHHHHHhHHHhc
Confidence 44556777777777777777766543 367777777777777 6667777777777777777777777777777777777
Q ss_pred ccCCCCCCccCcc
Q 003193 332 LSNCSKLKEIRPN 344 (840)
Q Consensus 332 L~~~~~l~~~p~~ 344 (840)
..+ +....+|..
T Consensus 130 s~~-na~~eid~d 141 (177)
T KOG4579|consen 130 SPE-NARAEIDVD 141 (177)
T ss_pred CCC-CccccCcHH
Confidence 666 455555543
|
|
| >KOG2982 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.00014 Score=70.97 Aligned_cols=85 Identities=24% Similarity=0.185 Sum_probs=41.7
Q ss_pred CCCcceeEeeccCcccc-CCCchhhcCCCCCcEEEcCCCCCCCCChhh-cCCCCCCEEEccCCccCC---cccccCCCCC
Q 003193 230 GFLKLKLFLFFTENLSL-QIPDPFFEGMTELRVLDLTGFRFHSLPSSL-GCLINLRTLSLENCLVVD---VAIIGDLKKL 304 (840)
Q Consensus 230 ~~~~L~~L~l~~~~~~~-~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~l-~~l~~L~~L~L~~~~~~~---~~~i~~L~~L 304 (840)
.+..++.+++.+|.++. .-...++.++++|++|+++.|++...-.++ ..+.+|++|-|.++.+.. -.....++.+
T Consensus 69 ~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~v 148 (418)
T KOG2982|consen 69 SVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKV 148 (418)
T ss_pred HhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhh
Confidence 34555555555555431 111233456666666666666554221111 234566666666655443 2344455555
Q ss_pred CEEeecCCCC
Q 003193 305 EILSLKHSSI 314 (840)
Q Consensus 305 ~~L~l~~~~l 314 (840)
+.|.++.|++
T Consensus 149 telHmS~N~~ 158 (418)
T KOG2982|consen 149 TELHMSDNSL 158 (418)
T ss_pred hhhhhccchh
Confidence 5555555533
|
|
| >KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.00019 Score=72.01 Aligned_cols=127 Identities=20% Similarity=0.213 Sum_probs=68.1
Q ss_pred ccCCCcEEEeccCCcccCCcc-----c-CCCcceeEeeccCccccC---CCchhhcCCCCCcEEEcCCCCCCC-----CC
Q 003193 208 IDEAPTAISIPFRGIYELPER-----L-GFLKLKLFLFFTENLSLQ---IPDPFFEGMTELRVLDLTGFRFHS-----LP 273 (840)
Q Consensus 208 ~~~~l~~L~l~~~~~~~l~~~-----~-~~~~L~~L~l~~~~~~~~---~~~~~~~~l~~Lr~L~l~~~~~~~-----lp 273 (840)
...++|.+....|.+..-+.. + ..+.|+.+.+..|.+... ....-|..+++|++|||..|.++. +.
T Consensus 155 ~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~La 234 (382)
T KOG1909|consen 155 SKPKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALA 234 (382)
T ss_pred CCcceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHH
Confidence 345666776776666443321 1 345666666666654321 111224566777777777776652 34
Q ss_pred hhhcCCCCCCEEEccCCccCC--ccc-----ccCCCCCCEEeecCCCCc-----ccChhhcCCCCCCEEEccC
Q 003193 274 SSLGCLINLRTLSLENCLVVD--VAI-----IGDLKKLEILSLKHSSIE-----QLPREIGQLTCLKLLDLSN 334 (840)
Q Consensus 274 ~~l~~l~~L~~L~L~~~~~~~--~~~-----i~~L~~L~~L~l~~~~l~-----~lp~~i~~L~~L~~L~L~~ 334 (840)
..++.+++||.|++++|.+.. ... -...++|++|.+.+|.|+ .+-..+...+.|+.|+|++
T Consensus 235 kaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLng 307 (382)
T KOG1909|consen 235 KALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNG 307 (382)
T ss_pred HHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCc
Confidence 455566677777777776555 111 112456666666666555 1222334455555555555
|
|
| >COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.00036 Score=67.35 Aligned_cols=87 Identities=25% Similarity=0.324 Sum_probs=51.2
Q ss_pred cCCCCCcEEEcCCCCCCC-----CChhhcCCCCCCEEEccCCccCC-----c-------ccccCCCCCCEEeecCCCCc-
Q 003193 254 EGMTELRVLDLTGFRFHS-----LPSSLGCLINLRTLSLENCLVVD-----V-------AIIGDLKKLEILSLKHSSIE- 315 (840)
Q Consensus 254 ~~l~~Lr~L~l~~~~~~~-----lp~~l~~l~~L~~L~L~~~~~~~-----~-------~~i~~L~~L~~L~l~~~~l~- 315 (840)
..+..+..++||||.+.+ +...|.+-.+|+..+++.-.... + +.+-++++|+..+|+.|.+.
T Consensus 27 ~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~ 106 (388)
T COG5238 27 EMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGS 106 (388)
T ss_pred HhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCc
Confidence 346778888999988762 45556667788888877543211 1 23455666666666666443
Q ss_pred ccC----hhhcCCCCCCEEEccCCCCCCcc
Q 003193 316 QLP----REIGQLTCLKLLDLSNCSKLKEI 341 (840)
Q Consensus 316 ~lp----~~i~~L~~L~~L~L~~~~~l~~~ 341 (840)
+.| .-|.+-+.|.||.+++ +.++.+
T Consensus 107 ~~~e~L~d~is~~t~l~HL~l~N-nGlGp~ 135 (388)
T COG5238 107 EFPEELGDLISSSTDLVHLKLNN-NGLGPI 135 (388)
T ss_pred ccchHHHHHHhcCCCceeEEeec-CCCCcc
Confidence 222 2345556666666665 344433
|
|
| >KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only] | Back alignment and domain information |
|---|
Probab=96.23 E-value=0.0018 Score=62.79 Aligned_cols=81 Identities=28% Similarity=0.448 Sum_probs=38.4
Q ss_pred cCCCCCcEEEcCCCCCCCCChhhcCCCCCCEEEccCC--ccCC--cccccCCCCCCEEeecCCCCcccC--hhhcCCCCC
Q 003193 254 EGMTELRVLDLTGFRFHSLPSSLGCLINLRTLSLENC--LVVD--VAIIGDLKKLEILSLKHSSIEQLP--REIGQLTCL 327 (840)
Q Consensus 254 ~~l~~Lr~L~l~~~~~~~lp~~l~~l~~L~~L~L~~~--~~~~--~~~i~~L~~L~~L~l~~~~l~~lp--~~i~~L~~L 327 (840)
..+..|..|++.+..++++- .+-.|++|++|.++.| .+.. +....++++|++|++++|+++.+- ..+.++.+|
T Consensus 40 d~~~~le~ls~~n~gltt~~-~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL 118 (260)
T KOG2739|consen 40 DEFVELELLSVINVGLTTLT-NFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENL 118 (260)
T ss_pred ccccchhhhhhhccceeecc-cCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcch
Confidence 34445555555555544331 2334556666666666 2222 223334466666666666544210 113444555
Q ss_pred CEEEccCC
Q 003193 328 KLLDLSNC 335 (840)
Q Consensus 328 ~~L~L~~~ 335 (840)
..|++.+|
T Consensus 119 ~~Ldl~n~ 126 (260)
T KOG2739|consen 119 KSLDLFNC 126 (260)
T ss_pred hhhhcccC
Confidence 55555554
|
|
| >KOG2123 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.95 E-value=0.00025 Score=68.67 Aligned_cols=78 Identities=27% Similarity=0.417 Sum_probs=39.5
Q ss_pred CCCEEEccCCccCCcccccCCCCCCEEeecCCCCcccChhhcCCCCCCEEEccCCCCCCccCc-ccccCCCCCcEEEccC
Q 003193 281 NLRTLSLENCLVVDVAIIGDLKKLEILSLKHSSIEQLPREIGQLTCLKLLDLSNCSKLKEIRP-NVISNLTRLEELYMGN 359 (840)
Q Consensus 281 ~L~~L~L~~~~~~~~~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~L~~~~~l~~~p~-~~l~~L~~L~~L~l~~ 359 (840)
+.+.|+..+|.+.++....+++.|++|.|+-|+|+.|.. +..+++|+.|+|.. |.+..+.+ .-+.++++|++|++..
T Consensus 20 ~vkKLNcwg~~L~DIsic~kMp~lEVLsLSvNkIssL~p-l~rCtrLkElYLRk-N~I~sldEL~YLknlpsLr~LWL~E 97 (388)
T KOG2123|consen 20 NVKKLNCWGCGLDDISICEKMPLLEVLSLSVNKISSLAP-LQRCTRLKELYLRK-NCIESLDELEYLKNLPSLRTLWLDE 97 (388)
T ss_pred HhhhhcccCCCccHHHHHHhcccceeEEeeccccccchh-HHHHHHHHHHHHHh-cccccHHHHHHHhcCchhhhHhhcc
Confidence 344455555555554445555555555555555555532 45555555555555 33433322 1134556666666655
Q ss_pred C
Q 003193 360 S 360 (840)
Q Consensus 360 ~ 360 (840)
|
T Consensus 98 N 98 (388)
T KOG2123|consen 98 N 98 (388)
T ss_pred C
Confidence 4
|
|
| >KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only] | Back alignment and domain information |
|---|
Probab=95.85 E-value=0.0038 Score=60.64 Aligned_cols=82 Identities=24% Similarity=0.291 Sum_probs=50.3
Q ss_pred cCCCCCcEEEcCCCC--CC-CCChhhcCCCCCCEEEccCCccCC---cccccCCCCCCEEeecCCCCcccC----hhhcC
Q 003193 254 EGMTELRVLDLTGFR--FH-SLPSSLGCLINLRTLSLENCLVVD---VAIIGDLKKLEILSLKHSSIEQLP----REIGQ 323 (840)
Q Consensus 254 ~~l~~Lr~L~l~~~~--~~-~lp~~l~~l~~L~~L~L~~~~~~~---~~~i~~L~~L~~L~l~~~~l~~lp----~~i~~ 323 (840)
-.+++|+.|.++.|. +. .++....++++|++|++++|++.. .....++.+|..|++..|..+.+- ..+.-
T Consensus 62 P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~~~~~l~dyre~vf~l 141 (260)
T KOG2739|consen 62 PKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNCSVTNLDDYREKVFLL 141 (260)
T ss_pred CCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhhhhcccCCccccccHHHHHHHH
Confidence 345566666666663 22 344444555777777777776654 344556667777777777666542 22456
Q ss_pred CCCCCEEEccCC
Q 003193 324 LTCLKLLDLSNC 335 (840)
Q Consensus 324 L~~L~~L~L~~~ 335 (840)
+++|.+||-..+
T Consensus 142 l~~L~~LD~~dv 153 (260)
T KOG2739|consen 142 LPSLKYLDGCDV 153 (260)
T ss_pred hhhhcccccccc
Confidence 778888876653
|
|
| >PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape [] | Back alignment and domain information |
|---|
Probab=95.83 E-value=0.0038 Score=35.86 Aligned_cols=21 Identities=24% Similarity=0.510 Sum_probs=13.7
Q ss_pred CCCEEeecCCCCcccChhhcC
Q 003193 303 KLEILSLKHSSIEQLPREIGQ 323 (840)
Q Consensus 303 ~L~~L~l~~~~l~~lp~~i~~ 323 (840)
+|++||+++|+++.+|.++++
T Consensus 1 ~L~~Ldls~n~l~~ip~~~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPSSFSN 21 (22)
T ss_dssp TESEEEETSSEESEEGTTTTT
T ss_pred CccEEECCCCcCEeCChhhcC
Confidence 466777777777777765544
|
LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A .... |
| >KOG3864 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.80 E-value=0.0015 Score=60.64 Aligned_cols=10 Identities=10% Similarity=0.228 Sum_probs=3.9
Q ss_pred ceEecccccc
Q 003193 651 KKLKLSSINV 660 (840)
Q Consensus 651 ~~L~l~~c~l 660 (840)
+.++-+++.+
T Consensus 104 eaVDAsds~I 113 (221)
T KOG3864|consen 104 EAVDASDSSI 113 (221)
T ss_pred EEEecCCchH
Confidence 3334444433
|
|
| >KOG2123 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.49 E-value=0.00091 Score=64.92 Aligned_cols=77 Identities=23% Similarity=0.233 Sum_probs=38.9
Q ss_pred CCcceeEeeccCccccCCCchhhcCCCCCcEEEcCCCCCCCCChhhcCCCCCCEEEccCCccCC---cccccCCCCCCEE
Q 003193 231 FLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPSSLGCLINLRTLSLENCLVVD---VAIIGDLKKLEIL 307 (840)
Q Consensus 231 ~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~---~~~i~~L~~L~~L 307 (840)
+.+.+.|++.++.+.. -++..+|+.|+||.|+-|.++++- .+..+++|+.|.|+.|.|.+ ..-+.++++|++|
T Consensus 18 l~~vkKLNcwg~~L~D---Isic~kMp~lEVLsLSvNkIssL~-pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~L 93 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDD---ISICEKMPLLEVLSLSVNKISSLA-PLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTL 93 (388)
T ss_pred HHHhhhhcccCCCccH---HHHHHhcccceeEEeeccccccch-hHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhH
Confidence 3445555555555432 123456666666666666666552 34555555555555555444 2233344444444
Q ss_pred eecC
Q 003193 308 SLKH 311 (840)
Q Consensus 308 ~l~~ 311 (840)
.|..
T Consensus 94 WL~E 97 (388)
T KOG2123|consen 94 WLDE 97 (388)
T ss_pred hhcc
Confidence 4443
|
|
| >KOG3864 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.05 E-value=0.0055 Score=57.05 Aligned_cols=69 Identities=17% Similarity=0.295 Sum_probs=49.0
Q ss_pred ccccccceeecccccccccccccccccCCCCcccCCccEEEEecCCCcccccchhHHhhcccccEEEEecccccc
Q 003193 498 GTFPLLESLFLHNLINLEKVCDGKVRLNEDDKSFSNLRIIKVEGCHRVKHLFPFSLVKNLLQLQKVKVTDCTNLK 572 (840)
Q Consensus 498 ~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~i~~c~~l~ 572 (840)
..++.++.|.+.+|..+.+|+.+.+. +-+|+|+.|+|++|+.+++- ....+..+++|+.|.+.+.+.+.
T Consensus 122 ~~l~~i~~l~l~~ck~~dD~~L~~l~-----~~~~~L~~L~lsgC~rIT~~-GL~~L~~lknLr~L~l~~l~~v~ 190 (221)
T KOG3864|consen 122 RDLRSIKSLSLANCKYFDDWCLERLG-----GLAPSLQDLDLSGCPRITDG-GLACLLKLKNLRRLHLYDLPYVA 190 (221)
T ss_pred hccchhhhheeccccchhhHHHHHhc-----ccccchheeeccCCCeechh-HHHHHHHhhhhHHHHhcCchhhh
Confidence 45667788888888888888755444 36788999999989888875 33445667777777776655443
|
|
| >PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape [] | Back alignment and domain information |
|---|
Probab=95.04 E-value=0.0066 Score=34.88 Aligned_cols=21 Identities=43% Similarity=0.659 Sum_probs=12.7
Q ss_pred CCcEEEcCCCCCCCCChhhcC
Q 003193 258 ELRVLDLTGFRFHSLPSSLGC 278 (840)
Q Consensus 258 ~Lr~L~l~~~~~~~lp~~l~~ 278 (840)
+|++||+++|.++.+|++|++
T Consensus 1 ~L~~Ldls~n~l~~ip~~~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPSSFSN 21 (22)
T ss_dssp TESEEEETSSEESEEGTTTTT
T ss_pred CccEEECCCCcCEeCChhhcC
Confidence 356666666666666655543
|
LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A .... |
| >COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification] | Back alignment and domain information |
|---|
Probab=94.81 E-value=0.025 Score=55.08 Aligned_cols=88 Identities=14% Similarity=0.119 Sum_probs=58.8
Q ss_pred CCCcceeEeeccCccccCCCc---hhhcCCCCCcEEEcCCCCCC----CCC-------hhhcCCCCCCEEEccCCccCC-
Q 003193 230 GFLKLKLFLFFTENLSLQIPD---PFFEGMTELRVLDLTGFRFH----SLP-------SSLGCLINLRTLSLENCLVVD- 294 (840)
Q Consensus 230 ~~~~L~~L~l~~~~~~~~~~~---~~~~~l~~Lr~L~l~~~~~~----~lp-------~~l~~l~~L~~L~L~~~~~~~- 294 (840)
.+..+..+++++|.+...-.. ..+.+-++|++.+++.-... .+| +.+-+|++|+..+|+.|-+..
T Consensus 28 ~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~ 107 (388)
T COG5238 28 MMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSE 107 (388)
T ss_pred hhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcc
Confidence 467788888888876543222 22355677888877765322 223 345678888999998887665
Q ss_pred -c----ccccCCCCCCEEeecCCCCccc
Q 003193 295 -V----AIIGDLKKLEILSLKHSSIEQL 317 (840)
Q Consensus 295 -~----~~i~~L~~L~~L~l~~~~l~~l 317 (840)
| ..|++-+.|.+|.+++|.+-.+
T Consensus 108 ~~e~L~d~is~~t~l~HL~l~NnGlGp~ 135 (388)
T COG5238 108 FPEELGDLISSSTDLVHLKLNNNGLGPI 135 (388)
T ss_pred cchHHHHHHhcCCCceeEEeecCCCCcc
Confidence 3 3567778888888888876533
|
|
| >PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D | Back alignment and domain information |
|---|
Probab=94.22 E-value=0.033 Score=29.56 Aligned_cols=16 Identities=31% Similarity=0.617 Sum_probs=7.3
Q ss_pred CCCEEeecCCCCcccC
Q 003193 303 KLEILSLKHSSIEQLP 318 (840)
Q Consensus 303 ~L~~L~l~~~~l~~lp 318 (840)
+|++|++++|+++++|
T Consensus 2 ~L~~L~l~~n~L~~lP 17 (17)
T PF13504_consen 2 NLRTLDLSNNRLTSLP 17 (17)
T ss_dssp T-SEEEETSS--SSE-
T ss_pred ccCEEECCCCCCCCCc
Confidence 4566666666665554
|
... |
| >PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A | Back alignment and domain information |
|---|
Probab=93.89 E-value=0.16 Score=45.35 Aligned_cols=103 Identities=17% Similarity=0.326 Sum_probs=42.4
Q ss_pred chhhcCCCCCcEEEcCCCCCCCCC-hhhcCCCCCCEEEccCCccCC--cccccCCCCCCEEeecCCCCcccCh-hhcCCC
Q 003193 250 DPFFEGMTELRVLDLTGFRFHSLP-SSLGCLINLRTLSLENCLVVD--VAIIGDLKKLEILSLKHSSIEQLPR-EIGQLT 325 (840)
Q Consensus 250 ~~~~~~l~~Lr~L~l~~~~~~~lp-~~l~~l~~L~~L~L~~~~~~~--~~~i~~L~~L~~L~l~~~~l~~lp~-~i~~L~ 325 (840)
...|.++.+|+.+.+.. .+..++ ..|..+.+|+.+.+.++ +.. ...+.++.+|+.+.+.. .+..++. .+..++
T Consensus 5 ~~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~ 81 (129)
T PF13306_consen 5 NNAFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCT 81 (129)
T ss_dssp TTTTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-T
T ss_pred HHHHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccc
Confidence 34455555566665553 344442 23455555666665543 333 23455555566666644 3444433 234456
Q ss_pred CCCEEEccCCCCCCccCcccccCCCCCcEEEcc
Q 003193 326 CLKLLDLSNCSKLKEIRPNVISNLTRLEELYMG 358 (840)
Q Consensus 326 ~L~~L~L~~~~~l~~~p~~~l~~L~~L~~L~l~ 358 (840)
+|+.+++.. .+..++...+.+. +|+.+.+.
T Consensus 82 ~l~~i~~~~--~~~~i~~~~f~~~-~l~~i~~~ 111 (129)
T PF13306_consen 82 NLKNIDIPS--NITEIGSSSFSNC-NLKEINIP 111 (129)
T ss_dssp TECEEEETT--T-BEEHTTTTTT--T--EEE-T
T ss_pred cccccccCc--cccEEchhhhcCC-CceEEEEC
Confidence 666666643 2445555445554 56655544
|
|
| >PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A | Back alignment and domain information |
|---|
Probab=93.66 E-value=0.18 Score=44.96 Aligned_cols=115 Identities=16% Similarity=0.275 Sum_probs=59.6
Q ss_pred CCCcceeEeeccCccccCCCchhhcCCCCCcEEEcCCCCCCCCC-hhhcCCCCCCEEEccCCccCC--cccccCCCCCCE
Q 003193 230 GFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLP-SSLGCLINLRTLSLENCLVVD--VAIIGDLKKLEI 306 (840)
Q Consensus 230 ~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp-~~l~~l~~L~~L~L~~~~~~~--~~~i~~L~~L~~ 306 (840)
.+.+|+.+.+.. . ...++...|..+..|+.+.+.++ +..++ ..+.++..|+.+.+.+ .+.. ...+..+.+|+.
T Consensus 10 ~~~~l~~i~~~~-~-~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~ 85 (129)
T PF13306_consen 10 NCSNLESITFPN-T-IKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKN 85 (129)
T ss_dssp T-TT--EEEETS-T---EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECE
T ss_pred CCCCCCEEEECC-C-eeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccccccc
Confidence 456777777763 2 22566667788888888888774 66554 3467777888888865 3333 456677888999
Q ss_pred EeecCCCCcccCh-hhcCCCCCCEEEccCCCCCCccCcccccCCCCC
Q 003193 307 LSLKHSSIEQLPR-EIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRL 352 (840)
Q Consensus 307 L~l~~~~l~~lp~-~i~~L~~L~~L~L~~~~~l~~~p~~~l~~L~~L 352 (840)
+++..+ ++.++. .+.+. +|+.+.+.. .+..++...+.+.++|
T Consensus 86 i~~~~~-~~~i~~~~f~~~-~l~~i~~~~--~~~~i~~~~F~~~~~l 128 (129)
T PF13306_consen 86 IDIPSN-ITEIGSSSFSNC-NLKEINIPS--NITKIEENAFKNCTKL 128 (129)
T ss_dssp EEETTT--BEEHTTTTTT--T--EEE-TT--B-SS----GGG-----
T ss_pred cccCcc-ccEEchhhhcCC-CceEEEECC--CccEECCccccccccC
Confidence 998764 666654 35565 888888764 5666776667666665
|
|
| >PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D | Back alignment and domain information |
|---|
Probab=93.06 E-value=0.058 Score=28.63 Aligned_cols=16 Identities=56% Similarity=0.860 Sum_probs=7.3
Q ss_pred CCcEEEcCCCCCCCCC
Q 003193 258 ELRVLDLTGFRFHSLP 273 (840)
Q Consensus 258 ~Lr~L~l~~~~~~~lp 273 (840)
+|++|++++|+++++|
T Consensus 2 ~L~~L~l~~n~L~~lP 17 (17)
T PF13504_consen 2 NLRTLDLSNNRLTSLP 17 (17)
T ss_dssp T-SEEEETSS--SSE-
T ss_pred ccCEEECCCCCCCCCc
Confidence 4666666666665554
|
... |
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=91.08 E-value=0.79 Score=56.56 Aligned_cols=150 Identities=13% Similarity=0.229 Sum_probs=92.6
Q ss_pred eEEcc----CCCHHHHHHHHHHHhCCCCCCCchhhHHHHHHHHhCCCchhHHHHHHHhcCCCHHHHHHHHHHhhcCCCCC
Q 003193 9 DFLDW----LLSNEEASHLFEKIVGHSAKKSDFETIGVEIVAKCGGLPIAIKTIANALKNKSPRIWKDAVNQLSNSNPRK 84 (840)
Q Consensus 9 ~~~l~----~L~~~~s~~Lf~~~a~~~~~~~~~~~i~~~i~~~c~GlPLai~~~g~~L~~~~~~~W~~~l~~l~~~~~~~ 84 (840)
..++. .++.+|+-++|....+..-. .+...+|.+.|+|.|+++..++..++..... -......+.......
T Consensus 176 ~~~l~~~~l~f~~~e~~~ll~~~~~~~~~----~~~~~~l~~~t~Gwp~~l~l~~~~~~~~~~~-~~~~~~~~~~~~~~~ 250 (903)
T PRK04841 176 LLEIGSQQLAFDHQEAQQFFDQRLSSPIE----AAESSRLCDDVEGWATALQLIALSARQNNSS-LHDSARRLAGINASH 250 (903)
T ss_pred ceecCHHhCCCCHHHHHHHHHhccCCCCC----HHHHHHHHHHhCChHHHHHHHHHHHhhCCCc-hhhhhHhhcCCCchh
Confidence 34555 89999999999876553222 3556789999999999999998877643210 011111111000001
Q ss_pred cccccccccce-eecccccCchhhhhHHHhccCCCCCCccCHHHHHHHHhhcccccccchHHHHHHHHHHHHHHHhhccc
Q 003193 85 IQGMDADLSSI-ELSYEFLKCKEVKSLFQLCGLLKDGSRIAVDDLLRYVMGLRLLTNADTLEAARNRVHTLIDNLKSASL 163 (840)
Q Consensus 85 ~~~~~~~~~~l-~lSY~~L~~~~lk~cfl~~~~fp~~~~i~~~~li~~wia~gfi~~~~~~~~~~~~~~~~~~~L~~~~l 163 (840)
+ ...+ .--++.||++ .+..+...|+++ .++.+ +...- .+.. + ..+.+++|.+.++
T Consensus 251 ~------~~~l~~~v~~~l~~~-~~~~l~~~a~~~---~~~~~-l~~~l-----~~~~----~----~~~~L~~l~~~~l 306 (903)
T PRK04841 251 L------SDYLVEEVLDNVDLE-TRHFLLRCSVLR---SMNDA-LIVRV-----TGEE----N----GQMRLEELERQGL 306 (903)
T ss_pred H------HHHHHHHHHhcCCHH-HHHHHHHhcccc---cCCHH-HHHHH-----cCCC----c----HHHHHHHHHHCCC
Confidence 1 1111 2237799998 999999999987 35533 22211 1111 1 2347888888998
Q ss_pred ccc-CC-CCCceEeehhHHHHHHHHH
Q 003193 164 LFD-GD-SEDHAKMHRIIHAIAVSIA 187 (840)
Q Consensus 164 ~~~-~~-~~~~~~mhdli~~l~~~i~ 187 (840)
|.. .+ ....|+.|++++++.+...
T Consensus 307 ~~~~~~~~~~~yr~H~L~r~~l~~~l 332 (903)
T PRK04841 307 FIQRMDDSGEWFRYHPLFASFLRHRC 332 (903)
T ss_pred eeEeecCCCCEEehhHHHHHHHHHHH
Confidence 753 22 3347899999999988754
|
|
| >KOG0473 consensus Leucine-rich repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=90.66 E-value=0.0069 Score=57.40 Aligned_cols=80 Identities=16% Similarity=0.126 Sum_probs=40.5
Q ss_pred CCCCCcEEEcCCCCCCCCChhhcCCCCCCEEEccCCccCC-cccccCCCCCCEEeecCCCCcccChhhcCCCCCCEEEcc
Q 003193 255 GMTELRVLDLTGFRFHSLPSSLGCLINLRTLSLENCLVVD-VAIIGDLKKLEILSLKHSSIEQLPREIGQLTCLKLLDLS 333 (840)
Q Consensus 255 ~l~~Lr~L~l~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~-~~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~L~ 333 (840)
.++...+||++.|++..+-..++.+..|..|+++.|.+.. |..++.+..++.+++..|+.+..|.+.+++++++++++.
T Consensus 40 ~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~~~~~p~s~~k~~~~k~~e~k 119 (326)
T KOG0473|consen 40 SFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNNHSQQPKSQKKEPHPKKNEQK 119 (326)
T ss_pred ccceeeeehhhhhHHHhhccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccchhhCCccccccCCcchhhhc
Confidence 3444555555555544444444444555555555554444 444555555555555555555555555555555555544
Q ss_pred C
Q 003193 334 N 334 (840)
Q Consensus 334 ~ 334 (840)
+
T Consensus 120 ~ 120 (326)
T KOG0473|consen 120 K 120 (326)
T ss_pred c
Confidence 4
|
|
| >smart00370 LRR Leucine-rich repeats, outliers | Back alignment and domain information |
|---|
Probab=89.94 E-value=0.27 Score=29.45 Aligned_cols=19 Identities=26% Similarity=0.455 Sum_probs=11.9
Q ss_pred CCCCEEeecCCCCcccChh
Q 003193 302 KKLEILSLKHSSIEQLPRE 320 (840)
Q Consensus 302 ~~L~~L~l~~~~l~~lp~~ 320 (840)
.+|++|++++|.++.+|..
T Consensus 2 ~~L~~L~L~~N~l~~lp~~ 20 (26)
T smart00370 2 PNLRELDLSNNQLSSLPPG 20 (26)
T ss_pred CCCCEEECCCCcCCcCCHH
Confidence 4566666666666666654
|
|
| >smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily | Back alignment and domain information |
|---|
Probab=89.94 E-value=0.27 Score=29.45 Aligned_cols=19 Identities=26% Similarity=0.455 Sum_probs=11.9
Q ss_pred CCCCEEeecCCCCcccChh
Q 003193 302 KKLEILSLKHSSIEQLPRE 320 (840)
Q Consensus 302 ~~L~~L~l~~~~l~~lp~~ 320 (840)
.+|++|++++|.++.+|..
T Consensus 2 ~~L~~L~L~~N~l~~lp~~ 20 (26)
T smart00369 2 PNLRELDLSNNQLSSLPPG 20 (26)
T ss_pred CCCCEEECCCCcCCcCCHH
Confidence 4566666666666666654
|
|
| >KOG0473 consensus Leucine-rich repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=85.86 E-value=0.027 Score=53.51 Aligned_cols=86 Identities=13% Similarity=0.070 Sum_probs=75.2
Q ss_pred hhcCCCCCCEEEccCCccCC-cccccCCCCCCEEeecCCCCcccChhhcCCCCCCEEEccCCCCCCccCcccccCCCCCc
Q 003193 275 SLGCLINLRTLSLENCLVVD-VAIIGDLKKLEILSLKHSSIEQLPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLE 353 (840)
Q Consensus 275 ~l~~l~~L~~L~L~~~~~~~-~~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~L~~~~~l~~~p~~~l~~L~~L~ 353 (840)
.+.....-.+||++.|++.. -..++.++.|..||++.|.+..+|...+++..++++++.. +.....|.. +++++.++
T Consensus 37 ei~~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~-n~~~~~p~s-~~k~~~~k 114 (326)
T KOG0473|consen 37 EIASFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHK-NNHSQQPKS-QKKEPHPK 114 (326)
T ss_pred hhhccceeeeehhhhhHHHhhccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhc-cchhhCCcc-ccccCCcc
Confidence 46677889999999998777 6778889999999999999999999999999999999887 778889988 79999999
Q ss_pred EEEccCCcc
Q 003193 354 ELYMGNSFT 362 (840)
Q Consensus 354 ~L~l~~~~~ 362 (840)
.++..++.+
T Consensus 115 ~~e~k~~~~ 123 (326)
T KOG0473|consen 115 KNEQKKTEF 123 (326)
T ss_pred hhhhccCcc
Confidence 998877653
|
|
| >smart00370 LRR Leucine-rich repeats, outliers | Back alignment and domain information |
|---|
Probab=85.75 E-value=0.82 Score=27.34 Aligned_cols=21 Identities=38% Similarity=0.616 Sum_probs=14.8
Q ss_pred CCCCcEEEcCCCCCCCCChhh
Q 003193 256 MTELRVLDLTGFRFHSLPSSL 276 (840)
Q Consensus 256 l~~Lr~L~l~~~~~~~lp~~l 276 (840)
+++|++|++++|.++.+|...
T Consensus 1 L~~L~~L~L~~N~l~~lp~~~ 21 (26)
T smart00370 1 LPNLRELDLSNNQLSSLPPGA 21 (26)
T ss_pred CCCCCEEECCCCcCCcCCHHH
Confidence 356777777777777777653
|
|
| >smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily | Back alignment and domain information |
|---|
Probab=85.75 E-value=0.82 Score=27.34 Aligned_cols=21 Identities=38% Similarity=0.616 Sum_probs=14.8
Q ss_pred CCCCcEEEcCCCCCCCCChhh
Q 003193 256 MTELRVLDLTGFRFHSLPSSL 276 (840)
Q Consensus 256 l~~Lr~L~l~~~~~~~lp~~l 276 (840)
+++|++|++++|.++.+|...
T Consensus 1 L~~L~~L~L~~N~l~~lp~~~ 21 (26)
T smart00369 1 LPNLRELDLSNNQLSSLPPGA 21 (26)
T ss_pred CCCCCEEECCCCcCCcCCHHH
Confidence 356777777777777777653
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A* Length = 549 | Back alignment and structure |
|---|
Score = 100 bits (249), Expect = 5e-22
Identities = 26/187 (13%), Positives = 54/187 (28%), Gaps = 11/187 (5%)
Query: 15 LSNEEASHLFEKIVGHSAKKSDFETIGVEIVAKCGGLPIAIKTIANALKNKSPRIWKDAV 74
L +E E E + + + G P + + + K+
Sbjct: 293 LEIDECYDFLEAYGMPMPVGEKEEDVLNKTIELSSGNPATLMMFFKSCEPKTFEKMAQLN 352
Query: 75 NQLSNSNPRKIQGMDAD-----LSSIELSYEFLKCKEVKSLFQLCGLLKDGSRIAVDDLL 129
N+L + ++ + +++ E L E +S ++ G I V
Sbjct: 353 NKLESRGLVGVECITPYSYKSLAMALQRCVEVLSD-EDRSALAFAVVMPPGVDIPVKLWS 411
Query: 130 RYVMGLRLLTNADTLEAARNRVHTLIDNLKSASLLFDGD--SEDHAKMHRIIHAIAVSIA 187
+ + L+ + V + L L G K+ IIH +
Sbjct: 412 CVIPVDICSNEEEQLD---DEVADRLKRLSKRGALLSGKRMPVLTFKIDHIIHMFLKHVV 468
Query: 188 AEKLLFN 194
+ + N
Sbjct: 469 DAQTIAN 475
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328 | Back alignment and structure |
|---|
Score = 92.7 bits (231), Expect = 1e-20
Identities = 29/173 (16%), Positives = 54/173 (31%), Gaps = 17/173 (9%)
Query: 222 IYELPERLGFLKLKLFLFFTENLSLQIPDPFFEG-MTELRVLDLTGFRFHSLPSSLGCLI 280
+ R T D + L+L P L
Sbjct: 45 RWHSAWRQANSNNPQIETRTGRALKATADLLEDATQPGRVALELRSVPLPQFPDQAFRLS 104
Query: 281 NLRTLSLENCLVVDV-AIIGDLKKLEILSLKHSSIEQLPREIGQLTCLKLLDLSNCSKLK 339
+L+ ++++ ++++ + LE L+L + + LP I L L+ L + C +L
Sbjct: 105 HLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSIRACPELT 164
Query: 340 EI--------RPNVISNLTRLEELYM-GNSFTQWKVEGQSNASLGELKQLSRL 383
E+ L L+ L + AS+ L+ L L
Sbjct: 165 ELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSL------PASIANLQNLKSL 211
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328 | Back alignment and structure |
|---|
Score = 92.3 bits (230), Expect = 2e-20
Identities = 37/149 (24%), Positives = 57/149 (38%), Gaps = 12/149 (8%)
Query: 224 ELPERLGFLKLKLFLFFTENL--------SLQIPDPFFEGMTELRVLDLTGFRFHSLPSS 275
ELPE L NL ++ + L+ L + +L +
Sbjct: 165 ELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGPA 224
Query: 276 LGCLINLRTLSLENC--LVVDVAIIGDLKKLEILSLKH-SSIEQLPREIGQLTCLKLLDL 332
+ L L L L C L I G L+ L LK S++ LP +I +LT L+ LDL
Sbjct: 225 IHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDL 284
Query: 333 SNCSKLKEIRPNVISNLTRLEELYMGNSF 361
C L + P++I+ L + +
Sbjct: 285 RGCVNLSRL-PSLIAQLPANCIILVPPHL 312
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328 | Back alignment and structure |
|---|
Score = 86.5 bits (215), Expect = 2e-18
Identities = 40/179 (22%), Positives = 68/179 (37%), Gaps = 29/179 (16%)
Query: 222 IYELPERLGFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGF-RFHSLPSSLG--- 277
+ ELP+ + L N +P + LR L + LP L
Sbjct: 116 LMELPDTMQQFAGLETLTLARNPLRALPA-SIASLNRLRELSIRACPELTELPEPLASTD 174
Query: 278 ------CLINLRTLSLENCLVVDV-AIIGDLKKLEILSLKHSSIEQLPREIGQLTCLKLL 330
L+NL++L LE + + A I +L+ L+ L +++S + L I L L+ L
Sbjct: 175 ASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEEL 234
Query: 331 DLSNCSKLKEIRPNVISNLTRLEELYMGNSFTQWKVEGQSN------ASLGELKQLSRL 383
DL C+ L+ P + L+ L + + + + L QL +L
Sbjct: 235 DLRGCTALRNY-PPIFGGRAPLKRLILKD----------CSNLLTLPLDIHRLTQLEKL 282
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328 | Back alignment and structure |
|---|
Score = 64.2 bits (157), Expect = 5e-11
Identities = 13/132 (9%), Positives = 33/132 (25%), Gaps = 14/132 (10%)
Query: 256 MTELRVLDLTG-FRFHSLPSSLGCLINLRTLSLENCLVVDVAIIGDLKKLEILSLKHSSI 314
+ L G L + +I + ++
Sbjct: 11 SSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHS--AWRQANSNNPQIETRTGRAL 68
Query: 315 EQLPREIGQLTCLKL--LDLSNCSKLKEIRPNVISNLTRLEELYM-GNSFTQWKVEGQSN 371
+ + T L+L + L + P+ L+ L+ + + +
Sbjct: 69 KATADLLEDATQPGRVALELRSV-PLPQF-PDQAFRLSHLQHMTIDAAGLMEL------P 120
Query: 372 ASLGELKQLSRL 383
++ + L L
Sbjct: 121 DTMQQFAGLETL 132
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328 | Back alignment and structure |
|---|
Score = 52.3 bits (126), Expect = 3e-07
Identities = 21/103 (20%), Positives = 34/103 (33%), Gaps = 5/103 (4%)
Query: 222 IYELPERLGFLK-LKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGF-RFHSLPSSLGCL 279
+ L + L L+ P F G L+ L L +LP + L
Sbjct: 218 LSALGPAIHHLPKLEELDLRGCTALRNYPP-IFGGRAPLKRLILKDCSNLLTLPLDIHRL 276
Query: 280 INLRTLSLENCLVVDV--AIIGDLKKLEILSLKHSSIEQLPRE 320
L L L C+ + ++I L I+ + QL +
Sbjct: 277 TQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQAQLDQH 319
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636 | Back alignment and structure |
|---|
Score = 81.2 bits (201), Expect = 5e-16
Identities = 19/163 (11%), Positives = 47/163 (28%), Gaps = 5/163 (3%)
Query: 228 RLGFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPSSLGCLINLRTLSL 287
R F L ++ I + + + ++ L LR +
Sbjct: 155 REDFSDLIKDCINSDPQQKSIK-KSSRITLKDTQIGQLSNNITFVSKAVMRLTKLRQFYM 213
Query: 288 ENCLVVDVAIIGDLKKLEILSLKHSSIEQLPREIGQLTCLKLLDLSNCSKLKEIRPNVIS 347
N V I + + + L L +++ NC L ++ P +
Sbjct: 214 GNSPFVAENICEAWENENSEYAQQYKT--EDLKWDNLKDLTDVEVYNCPNLTKL-PTFLK 270
Query: 348 NLTRLEELYM-GNSFTQWKVEGQSNASLGELKQLSRLTTLEVH 389
L ++ + + N + +L + ++ + +
Sbjct: 271 ALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIG 313
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636 | Back alignment and structure |
|---|
Score = 79.7 bits (197), Expect = 2e-15
Identities = 25/176 (14%), Positives = 63/176 (35%), Gaps = 23/176 (13%)
Query: 225 LPERLGFLK-LKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLP---------S 274
+ LK L + ++P F + + E++++++ R S +
Sbjct: 241 EDLKWDNLKDLTDVEVYNCPNLTKLP-TFLKALPEMQLINVACNRGISGEQLKDDWQALA 299
Query: 275 SLGCLINLRTLSLENCLVVDVAI---IGDLKKLEILSLKHSSIEQLPREIGQLTCLKLLD 331
++ + + + + + +KKL +L ++ +E G L L+
Sbjct: 300 DAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLPAFGSEIKLASLN 359
Query: 332 LSNCSKLKEIRPNVISNLTRLEELYM-GNSFTQWKVEGQSNASLGELKQLSRLTTL 386
L+ ++ EI N ++E L N ++ + K +S ++ +
Sbjct: 360 LAYN-QITEIPANFCGFTEQVENLSFAHNKLK-------YIPNIFDAKSVSVMSAI 407
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636 | Back alignment and structure |
|---|
Score = 70.1 bits (172), Expect = 1e-12
Identities = 22/157 (14%), Positives = 57/157 (36%), Gaps = 17/157 (10%)
Query: 243 NLSLQIPDPFFEGMTELRVLDLTGFRFHSLPSSL-GCLINLRTLSLENCL---VVDVAII 298
L ++P F +L L+L + +P++ G + LS + + ++
Sbjct: 341 QLEGKLPA--FGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDA 398
Query: 299 GDLKKLEILSLKH--------SSIEQLPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLT 350
+ + + + + + L + + ++LSN ++ + + S +
Sbjct: 399 KSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNN-QISKFPKELFSTGS 457
Query: 351 RLEELYM-GNSFTQWKVEGQSNASLGELKQLSRLTTL 386
L + + GN T+ + + K LT++
Sbjct: 458 PLSSINLMGNMLTEIPKNSLKDENE-NFKNTYLLTSI 493
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636 | Back alignment and structure |
|---|
Score = 63.5 bits (155), Expect = 2e-10
Identities = 25/158 (15%), Positives = 49/158 (31%), Gaps = 14/158 (8%)
Query: 216 SIPFRGIYELPERLGFLKLKLFLFFTEN-LSLQIPDPFFEG-MTELRVLDLTGFRFHSLP 273
IP + + E L + N L+ ++ D F + L +DL+ F P
Sbjct: 471 EIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSKFP 529
Query: 274 SSLGCLINLRTLSLENCLVVDV--------AIIGDLKKLEILSLKHSSIEQLPREIGQLT 325
+ L+ + N I L L + + I ++ +I
Sbjct: 530 TQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRKVNEKI--TP 587
Query: 326 CLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGNSFTQ 363
+ +LD+ + I + + + TQ
Sbjct: 588 NISVLDIKDN-PNISIDLSYVCPYIEAGMYMLFYDKTQ 624
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636 | Back alignment and structure |
|---|
Score = 62.0 bits (151), Expect = 5e-10
Identities = 27/167 (16%), Positives = 53/167 (31%), Gaps = 30/167 (17%)
Query: 216 SIPFRGIYELPERLGFLKLKLFLFFTENLSLQ------IPDPFFEGMTELRVLDLTGFRF 269
S+ + L + +++L P F + L ++L G
Sbjct: 416 SVDGKNFDPLDPTPFKGI-NV-----SSINLSNNQISKFPKELFSTGSPLSSINLMGNML 469
Query: 270 HSLP--------SSLGCLINLRTLSLENCL---VVDVAIIGDLKKLEILSLKHSSIEQLP 318
+P + L ++ L + D L L + L ++S + P
Sbjct: 470 TEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSKFP 529
Query: 319 REIGQLTCLKLLDLSNC------SKLKEIRPNVISNLTRLEELYMGN 359
+ + LK + N L+E P I+ L +L +G+
Sbjct: 530 TQPLNSSTLKGFGIRNQRDAQGNRTLREW-PEGITLCPSLTQLQIGS 575
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636 | Back alignment and structure |
|---|
Score = 58.5 bits (142), Expect = 6e-09
Identities = 17/158 (10%), Positives = 42/158 (26%), Gaps = 21/158 (13%)
Query: 243 NLSLQIPDPFFEGMTELRVLDL-----TGFRFHSLPSSLGCLINLRTLSLENCLVVDVAI 297
S ++P +TEL VL L P + ++
Sbjct: 92 GASGRVP-DAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQK-TF 149
Query: 298 IGDLKKLEILSLKH------SSIEQLPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTR 351
+ + + L + + + + + + + + + LT+
Sbjct: 150 VDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLS-NNITFV-SKAVMRLTK 207
Query: 352 LEELYM-GNSFTQWKVEGQSNASLGELKQLSRLTTLEV 388
L + YM + F ++ E + +
Sbjct: 208 LRQFYMGNSPFV-----AENICEAWENENSEYAQQYKT 240
|
| >1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens} Length = 591 | Back alignment and structure |
|---|
Score = 81.0 bits (200), Expect = 5e-16
Identities = 33/191 (17%), Positives = 68/191 (35%), Gaps = 23/191 (12%)
Query: 15 LSNEEASHLFEKIVGHSAKKSDFETIGVEIVAKCGGLPIAIKTIANALKNKSPRIWKDAV 74
L E+ + V KK+D I+ +C G P+ + I L++ P W+ +
Sbjct: 286 LGKEKGLEILSLFVNM--KKADLPEQAHSIIKECKGSPLVVSLIGALLRDF-PNRWEYYL 342
Query: 75 NQLSNSNPRKIQG-MDADLSSI----ELSYEFLKCKEVKSLFQLCGLLKDGSRIAVDDLL 129
QL N ++I+ D ++ +S E L+ ++K + +L+ ++ L
Sbjct: 343 KQLQNKQFKRIRKSSSYDYEALDEAMSISVEMLRE-DIKDYYTDLSILQKDVKVPTKVLC 401
Query: 130 RYVMGLRLLTNADTLEAARNRVHTLIDNLKSASLLF-DGDSEDHA-KMHRIIHAIAVSIA 187
V ++ + SLLF D + + +H +
Sbjct: 402 ILWD------------METEEVEDILQEFVNKSLLFCDRNGKSFRYYLHDLQVDFLTEKN 449
Query: 188 AEKLLFNIQNV 198
+L + +
Sbjct: 450 CSQLQDLHKKI 460
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 81.1 bits (199), Expect = 9e-16
Identities = 54/353 (15%), Positives = 108/353 (30%), Gaps = 108/353 (30%)
Query: 4 YEYSEDFLDWLLSNEEASHLFEKIVGHSAKKSDFETIGVEIVAKCGGLPIAIKTIANALK 63
S D L+ +E L K + + E P + IA +++
Sbjct: 287 THISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREV--------LTTNPRRLSIIAESIR 338
Query: 64 NKSPRI--WKD-AVNQLSNSNPRKIQGMDADLSSIELSYEFLKCKEVKSLFQLCGLLKDG 120
+ WK ++L+ IE S L+ E + +F +
Sbjct: 339 DGLATWDNWKHVNCDKLTTI--------------IESSLNVLEPAEYRKMFDRLSVFPPS 384
Query: 121 SRIAVDDLLRYVMGLRLLTNADTLEAARNRVHTLIDNLKSASLLFDGDSEDHAKMHRI-I 179
+ I ++ L + + + V +++ L SL+ E K I I
Sbjct: 385 AHIPTI-----LLSL-IWFDVIKSD-----VMVVVNKLHKYSLV-----EKQPKESTISI 428
Query: 180 HAIAVSIAAEKLLFNIQNVADLKEELDKIDEAPTAISIPFRGIYELPERLGFLKLKLFLF 239
+I + +L ++N L + +D Y +P+ F
Sbjct: 429 PSIYL-----ELKVKLENEYALHRSI--VDH------------YNIPKT----------F 459
Query: 240 FTENLSLQIPDPFF--------------EGMTELRVLDLTGFRF------HSLPSSLGCL 279
+++L D +F E MT R++ L FRF H +
Sbjct: 460 DSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLD-FRFLEQKIRHDSTAWNASG 518
Query: 280 INLRTLS---------LENCLVVDVAIIGDLKKL------EILSLKHSSIEQL 317
L TL +N + ++ + ++ K++ + ++
Sbjct: 519 SILNTLQQLKFYKPYICDNDPKYE-RLVNAILDFLPKIEENLICSKYTDLLRI 570
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 80.3 bits (197), Expect = 2e-15
Identities = 90/592 (15%), Positives = 205/592 (34%), Gaps = 146/592 (24%)
Query: 5 EYSEDFLDWLLSNEEASHLFEKIVGHSAKKSD--FETI---GVEIVAKC--GGLPIAIKT 57
+ +D +LS EE H+ + + F T+ E+V K L I K
Sbjct: 36 KDVQDMPKSILSKEEIDHIIM--SKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKF 93
Query: 58 IANALK--NKSP----RIWKDAVNQLSNSNPRKIQGMDADLSSIELSYEFLKCKEVKSLF 111
+ + +K + P R++ + ++L N N + ++S ++ Y L+ ++L
Sbjct: 94 LMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKY---NVSRLQP-YLKLR----QALL 145
Query: 112 QLCGLLKDGSRIAVDDLL---RYVMGLRLLTNADTLEAARNRVH-----------TLIDN 157
+ L+ + +D +L + + L + + ++ T+++
Sbjct: 146 E----LRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEM 201
Query: 158 LKSASLLFDGDSEDHAK-MHRIIHAIAVSIAAEKLLFNIQ----------NVADLKEELD 206
L+ D + + I I A + L + NV + + +
Sbjct: 202 LQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQN-AKAWN 260
Query: 207 KID-EAPTAISIPFRGIYELPERLGFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDL- 264
+ ++ F+ + + L T ++SL D +T V L
Sbjct: 261 AFNLSCKILLTTRFKQVT---DFLSAAT-------TTHISL---DHHSMTLTPDEVKSLL 307
Query: 265 ---TGFRFHSLPSSLGCLINLRTLSLENCLVVDVAIIGDLKKLEILS---LKHSSIEQLP 318
R LP + N R LS+ I + + + + KH + ++L
Sbjct: 308 LKYLDCRPQDLPREV-LTTNPRRLSI----------IAESIRDGLATWDNWKHVNCDKLT 356
Query: 319 REIGQLTCLKLLDLSNCSKLKE----------IRPNVIS----NLTRLEELYMGNSFTQW 364
I + L +L+ + K+ + I ++S ++ + + + + N ++
Sbjct: 357 TIIE--SSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKY 414
Query: 365 K-VEGQSNASLGELKQLSRLTTLEVHIPDAQVMPQDLVFVELERFRICIGDVWSWSDGYE 423
VE Q S + + L+V + + + + +V + + I ++
Sbjct: 415 SLVEKQPKESTISIPSIYLE--LKVKLENEYALHRSIV----DHYNI--------PKTFD 460
Query: 424 TSKTLKLQLNN--STYLGYGMKMLLKRTEDLHLDELAGFKNVVHELDDEEGF--ARLRHL 479
+ + L+ +++G+ +K + H + + F+ V LD F ++RH
Sbjct: 461 SDDLIPPYLDQYFYSHIGHHLKNI------EHPERMTLFRMVF--LDF--RFLEQKIRHD 510
Query: 480 HV-HNGPEIL------------HILNSDGRVGTFPLLESLFLHNLINLEKVC 518
N + +I ++D + L + L L +E+
Sbjct: 511 STAWNASGSILNTLQQLKFYKPYICDND---PKYERLVNAILDFLPKIEENL 559
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 58.3 bits (140), Expect = 9e-09
Identities = 71/457 (15%), Positives = 132/457 (28%), Gaps = 136/457 (29%)
Query: 294 DVAIIGDLKKLEILS---LKHSSIEQLPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLT 350
D + D+ K ILS + H I + L+L SK +E+ + +
Sbjct: 34 DCKDVQDMPK-SILSKEEIDH--IIMSKDAVSGT--LRLFWTL-LSKQEEMVQKFVEEV- 86
Query: 351 RLEELYMGNSF--TQWKVEGQSNASLGEL--KQLSRLTTLEVHIPDAQVMPQDLVFVELE 406
L Y F + K E + + + + +Q RL D QV + V
Sbjct: 87 -LRINY---KFLMSPIKTEQRQPSMMTRMYIEQRDRLYN------DNQVFAKYNV----S 132
Query: 407 RFRICIGDVWSWSDGYETSKTLKLQLNNSTYLG-YGMK------MLLKRTEDLHLDELAG 459
R + Y + L+L + + G+ + L +
Sbjct: 133 RLQP-----------YLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMD 181
Query: 460 FK----NVVHELDDEEGFARLRHLHVHNGPE-----------ILHILNSDGRVGTFPLLE 504
FK N+ + E L+ L P L I + + L
Sbjct: 182 FKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRL-LKS 240
Query: 505 SLFLHNLINLEKVCDGKV--------------RLNEDDKSFSNLRIIKVEGCHR--VKHL 548
+ + L+ L V + K R K ++ + H H
Sbjct: 241 KPYENCLLVLLNVQNAKAWNAFNLSCKILLTTR----FKQVTD-FLSAATTTHISLDHHS 295
Query: 549 FPFSLVKNLLQLQKV---KVTD-----CTN----LKLIVGKESENSAHKNGSISGVYFRK 596
+ + L K + D T L +I + A + ++
Sbjct: 296 MTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWD------NWKH 349
Query: 597 LHFLKLQHLPQLTSSGFDLETPTNTQGSNPGIIAEGDPKDFTSLFNERVVFPSLKKLKLS 656
++ KL + + + + +P ++ +F+ VFP +
Sbjct: 350 VNCDKLTTIIESS-------------------LNVLEPAEYRKMFDRLSVFP--PSAHIP 388
Query: 657 SINVEKIW--------------LNSFSAIESWGKNLT 679
+I + IW L+ +S +E K T
Sbjct: 389 TILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKEST 425
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876 | Back alignment and structure |
|---|
Score = 80.3 bits (198), Expect = 1e-15
Identities = 23/168 (13%), Positives = 51/168 (30%), Gaps = 6/168 (3%)
Query: 224 ELPERLGFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPSSLGCLINLR 283
+ +RL L I + + ++ +LT R + ++ L L+
Sbjct: 393 DYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTN-RITFISKAIQRLTKLQ 451
Query: 284 TLSLENCLVVDVAIIGDLKKLEILSLKHSSIEQLPREIGQLTCLKLLDLSNCSKLKEIRP 343
+ N + + S E L L ++L NC + ++ P
Sbjct: 452 IIYFANSPFT--YDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQL-P 508
Query: 344 NVISNLTRLEELYM-GNSFTQWKVEGQSNASL-GELKQLSRLTTLEVH 389
+ + +L L+ L + N L + ++ +
Sbjct: 509 DFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMG 556
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876 | Back alignment and structure |
|---|
Score = 71.4 bits (175), Expect = 7e-13
Identities = 29/175 (16%), Positives = 59/175 (33%), Gaps = 17/175 (9%)
Query: 224 ELPERLGFLKLKL-FLFFTENLSLQIPD---------PFFEGMTELRVLDLTGFRFHSLP 273
+LP+ L L +L L N + + ++++ + P
Sbjct: 506 QLPDFLYDLP-ELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFP 564
Query: 274 SS--LGCLINLRTLSLENCLVVDVAIIGDLKKLEILSLKHSSIEQLPREIGQ-LTCLKLL 330
+S L ++ L L + V + G KL L L ++ IE++P + ++ L
Sbjct: 565 ASASLQKMVKLGLLDCVHNKVRHLEAFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGL 624
Query: 331 DLSNCSKLKEIRPNV-ISNLTRLEELYM-GNSFTQWKVEGQSNASLGELKQLSRL 383
S+ KLK I ++ + + N + + S +
Sbjct: 625 GFSHN-KLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTV 678
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876 | Back alignment and structure |
|---|
Score = 69.9 bits (171), Expect = 2e-12
Identities = 18/171 (10%), Positives = 48/171 (28%), Gaps = 30/171 (17%)
Query: 222 IYELPERLGFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRF-HSLPSSLGCLI 280
+ + + + + + +L ++L LP L L
Sbjct: 460 FTYDNIAVDWEDANS----DYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLP 515
Query: 281 NLRTLSLENCLVVDVAIIGDLKKLEILSLKHSSIEQLPREIGQLTCLKLLDLSNCSKLKE 340
L++L++ + + + +L + +++ + L+E
Sbjct: 516 ELQSLNIACN------------RGISAAQLKADWTRLADDEDTGPKIQIFYMGYN-NLEE 562
Query: 341 IRPNV-ISNLTRLEELYM-GNSFTQWKVEGQSNASLGELKQLSRLTTLEVH 389
+ + + +L L N L +LT L++
Sbjct: 563 FPASASLQKMVKLGLLDCVHNKVR----------HLEAFGTNVKLTDLKLD 603
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876 | Back alignment and structure |
|---|
Score = 69.9 bits (171), Expect = 2e-12
Identities = 21/160 (13%), Positives = 46/160 (28%), Gaps = 22/160 (13%)
Query: 222 IYELPERLGFLKLKLFLFFTENLSL------QIPDPFFEGMTELRVLDLTG--------F 267
I + ++L + P F + + + L+
Sbjct: 656 IGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPEN 715
Query: 268 RFHSLPSSLGCLINLRTLSL-ENCL--VVDVAIIGDLKKLEILSLKHSSIEQLPREIGQL 324
+ L T+ L N L + D L L + + ++ P +
Sbjct: 716 SLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCFSSFPTQPLNS 775
Query: 325 TCLKLLDLS-----NCSKLKEIRPNVISNLTRLEELYMGN 359
+ LK + +++ P I+ L +L +G+
Sbjct: 776 SQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGS 815
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876 | Back alignment and structure |
|---|
Score = 57.6 bits (139), Expect = 1e-08
Identities = 33/192 (17%), Positives = 55/192 (28%), Gaps = 56/192 (29%)
Query: 243 NLSLQIPDPFFEGMTELRVLDLTGFRFHSLPS--------------------------SL 276
++PD + +TEL+VL L
Sbjct: 334 GAKGRVPDAIGQ-LTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFL 392
Query: 277 GCLINLRTLSLENCLVVDVAIIGDLKKLEILSLKHSS-------IEQLPREIGQLTCLKL 329
L L + + +KK +SLK + I + + I +LT L++
Sbjct: 393 DYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQI 452
Query: 330 LDLSNCS------------------KLKEIRPNVISNLTRLEELYMGNSFTQWKVEGQSN 371
+ +N K E SNL L ++ + N Q
Sbjct: 453 IYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYN----CPNMTQLP 508
Query: 372 ASLGELKQLSRL 383
L +L +L L
Sbjct: 509 DFLYDLPELQSL 520
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876 | Back alignment and structure |
|---|
Score = 57.2 bits (138), Expect = 2e-08
Identities = 21/154 (13%), Positives = 49/154 (31%), Gaps = 11/154 (7%)
Query: 216 SIPFRGIYELPERLGFLKLKLFLFFTENLSLQIPDPF-FEGMTELRVLDLTGFRFHSLPS 274
SIP + L + N + D F + L +D++ F S P+
Sbjct: 711 SIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCFSSFPT 770
Query: 275 SLGCLINLRTLSLENCLVVDV--------AIIGDLKKLEILSLKHSSIEQLPREIGQLTC 326
L+ + + + I L L + + I ++ ++
Sbjct: 771 QPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIRKVDEKL--TPQ 828
Query: 327 LKLLDLSNCSKLKEIRPNVISNLTRLEELYMGNS 360
L +LD+++ + +V + + + +
Sbjct: 829 LYILDIADNPNISIDVTSVCPYIEAGMYVLLYDK 862
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606 | Back alignment and structure |
|---|
Score = 75.8 bits (187), Expect = 3e-14
Identities = 32/183 (17%), Positives = 66/183 (36%), Gaps = 12/183 (6%)
Query: 220 RGIYELPERLGFLKLK--LFLFFTENLSLQIPDPFFEGMTE--LRVLDLTGFRFHSL-PS 274
+ + + + L ++ F + I FEG+ E + ++L F ++ +
Sbjct: 213 QNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSN 272
Query: 275 SLGCLINLRTLSLENCLVVDV-AIIGDLKKLEILSLKHSSIEQLP-REIGQLTCLKLLDL 332
+ C L+ L L + ++ + + L L+ L L + E L L L +
Sbjct: 273 TFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSI 332
Query: 333 SNCSKLKEIRPNVISNLTRLEELYMG-NSFTQWKVEGQSNASLGELKQLS----RLTTLE 387
+K E+ + NL L EL + + +L L+ L+ +L+
Sbjct: 333 KGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLK 392
Query: 388 VHI 390
Sbjct: 393 TEA 395
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606 | Back alignment and structure |
|---|
Score = 61.6 bits (150), Expect = 8e-10
Identities = 80/516 (15%), Positives = 147/516 (28%), Gaps = 108/516 (20%)
Query: 237 FLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPS-SLGCLINLRTLSLENCL--VV 293
FL T I + F+ L L LT + +L L+ L +
Sbjct: 61 FLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSI 120
Query: 294 DVAIIGDLKKLEILSLKHSSIEQLP-REIGQLTCLKLLDLSNCSKLKEIRPNVISNL--- 349
D + + K LE L L + I + + LK+LD N + + +S+L
Sbjct: 121 DFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNN-AIHYLSKEDMSSLQQA 179
Query: 350 ----------------------TRLEELYM-GNSFTQWKVEGQSNASLGELKQLS----R 382
+ L G +G N+++ L +
Sbjct: 180 TNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMD 239
Query: 383 LTTLEVHIPDAQVMPQDLVFVELERFRICIGDVWSWSDGYETSKTLKLQLNNSTYLGYGM 442
+ + + + + L++ + + + L L + + L G+
Sbjct: 240 DEDISPAVFEGLCEMS-VESINLQKHYF-FNISSNTFHCFSGLQELDLTATHLSELPSGL 297
Query: 443 KMLLKRTEDLHLDELAGFKNVVHELDDE--EGFARLRHLHVHNGPEILHILNSDGRVGTF 500
L + L L N L F L HL + + L + G +
Sbjct: 298 VGL-STLKKLVLS-----ANKFENLCQISASNFPSLTHLSIKGNTKRLEL--GTGCLENL 349
Query: 501 PLLESLFL-HNLINLEKVCDGKVRLNEDDKSFSNLRIIKVEGCHRVKHLFP--FSLVKNL 557
L L L H+ I C+ + ++ S+L+ + + L F L
Sbjct: 350 ENLRELDLSHDDIETSDCCNLQ------LRNLSHLQSLNLSYN-EPLSLKTEAFKECPQL 402
Query: 558 --LQLQKVKVTDCTNLKLIVGKESENSAHKNGSISGVYFRKLHFLKLQHLPQLTSSGFDL 615
L L ++ L L L H
Sbjct: 403 ELLDLAFTRLKVKDAQSPFQN-----------------LHLLKVLNLSH----------- 434
Query: 616 ETPTNTQGSNPGIIAEGDPKDFTSLFNERVVFPSLKKLKLSSINVEKIWLNSFSAIESWG 675
+ S+ + F L P+L+ L L + K + +++
Sbjct: 435 ---SLLDISSEQL--------FDGL-------PALQHLNLQGNHFPKGNIQKTNSL-QTL 475
Query: 676 KNLTKLTVEKCGRLKFLFSSSMVNGLEQLQQLDISH 711
L L + C L + L+ + +D+SH
Sbjct: 476 GRLEILVLSFC-DLSSI-DQHAFTSLKMMNHVDLSH 509
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606 | Back alignment and structure |
|---|
Score = 59.3 bits (144), Expect = 4e-09
Identities = 84/543 (15%), Positives = 157/543 (28%), Gaps = 112/543 (20%)
Query: 260 RVLDLTGFRFHSLP----------------------SSLGCLINLRTLSLENC--LVVDV 295
+ + + +P ++ LINL L L C +
Sbjct: 15 KTYNCENLGLNEIPGTLPNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHE 74
Query: 296 AIIGDLKKLEILSLKHSSIEQLPREI-GQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEE 354
+L+ L L + + + LK L + I + N LE
Sbjct: 75 DTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQT-GISSIDFIPLHNQKTLES 133
Query: 355 LYM-GNSFTQWKVEGQSNASLGELKQLS----RLTTLEVHIPDAQVMPQDLVFVELERFR 409
LY+ N + ++ +LK L + L + Q + L
Sbjct: 134 LYLGSNHIS--SIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSS---LQQATNLSLNLNG 188
Query: 410 ICIGDVWSWSDGYETSKTLKLQLNNSTYLGYGMKMLLKRTEDLHLDELAGFKNVVHELDD 469
I + + ++L + + + LK + L F+++ E
Sbjct: 189 NDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKG---LKNSTIQSLWLG-TFEDMDDEDIS 244
Query: 470 EEGFARLRHLHVHNGPEILHILNSDGRVGTFPLLESLFLHNLINLEKVCDGKVRLNEDDK 529
F L + V E +++ + S H L+++ L+E
Sbjct: 245 PAVFEGLCEMSV----ESINL--QKHYFFN---ISSNTFHCFSGLQELDLTATHLSELPS 295
Query: 530 SFSNLRIIKVEGCHRVKHLFPFSLVKNLLQ-LQKVKVTDCTNLK-LIVGKESENSAHKNG 587
L +K L L N + L ++ ++ +L L + ++ G
Sbjct: 296 GLVGLS--------TLKKL---VLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTG 344
Query: 588 SISGVYFRKLHFLKLQHLPQLTSSGFDLETPTNTQGSNPGIIAEGDPKDFTSLFNERVVF 647
+ L L L H + +S +L
Sbjct: 345 CLEN--LENLRELDLSH-DDIETSDCCNLQ-------------------LRNL------- 375
Query: 648 PSLKKLKLSSINVEKIWLNSFSAIESWGKNLTKLTVEKCGRLKFLFSSSMVNGLEQLQQL 707
L+ L LS + +F L L + RLK + S L L+ L
Sbjct: 376 SHLQSLNLSYNEPLSLKTEAFKEC----PQLELLDLAFT-RLKVKDAQSPFQNLHLLKVL 430
Query: 708 DISHCKSMNEVINTRVGRDDNMIEMVFPKLVSLQ---LSHLPKLTRFGIGDSVEFPSLCQ 764
++SH ++ E +F L +LQ L + I + +L +
Sbjct: 431 NLSHSL-----LD-------ISSEQLFDGLPALQHLNLQGN-HFPKGNIQKTNSLQTLGR 477
Query: 765 LQI 767
L+I
Sbjct: 478 LEI 480
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452 | Back alignment and structure |
|---|
Score = 74.4 bits (183), Expect = 5e-14
Identities = 33/138 (23%), Positives = 55/138 (39%), Gaps = 7/138 (5%)
Query: 248 IPDPFFEGMTELRVLDLTGF-RFHSLPS-SLGCLINLRTLSLENCLVVDVAIIGDLKKLE 305
IP F + L LDL + + + L NL+ L+L C + D+ + L LE
Sbjct: 162 IPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMPNLTPLVGLE 221
Query: 306 ILSLKHSSIEQLPRE-IGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYM-GNSFTQ 363
L + + ++ L+ LK L + N ++ I N L L EL + N+ +
Sbjct: 222 ELEMSGNHFPEIRPGSFHGLSSLKKLWVMNS-QVSLIERNAFDGLASLVELNLAHNNLS- 279
Query: 364 WKVEGQSNASLGELKQLS 381
+ L L +L
Sbjct: 280 -SLPHDLFTPLRYLVELH 296
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452 | Back alignment and structure |
|---|
Score = 68.6 bits (168), Expect = 3e-12
Identities = 38/160 (23%), Positives = 57/160 (35%), Gaps = 21/160 (13%)
Query: 241 TENLSLQ------IPDPFFEGMTELRVLDLTGFRFHSLPS-SLGCLINLRTLSLENCL-- 291
T L+L I F + L VL L + + L +L TL L +
Sbjct: 77 TRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLT 136
Query: 292 VVDVAIIGDLKKLEILSLKHSSIEQLPREI-GQLTCLKLLDLSNCSKLKEIRPNVISNLT 350
V+ L KL L L+++ IE +P ++ L LDL KL+ I L
Sbjct: 137 VIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLF 196
Query: 351 RLEELYM-GNSFTQWKVEGQSNASLGELKQLSRLTTLEVH 389
L+ L + + + L L L LE+
Sbjct: 197 NLKYLNLGMCNIK----------DMPNLTPLVGLEELEMS 226
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452 | Back alignment and structure |
|---|
Score = 57.1 bits (138), Expect = 1e-08
Identities = 40/180 (22%), Positives = 64/180 (35%), Gaps = 33/180 (18%)
Query: 238 LFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPS-SLGCLINLRTLSLENCLVVDVA 296
L N QI F G+ L L+L +PS + L LR L L N + +
Sbjct: 104 LQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIP 163
Query: 297 --IIGDLKKLEILSLKHS-SIEQLPREI-GQLTCLKLLDLSNCS---------------- 336
+ L L L +E + L LK L+L C+
Sbjct: 164 SYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMPNLTPLVGLEEL 223
Query: 337 -----KLKEIRPNVISNLTRLEELYM-GNSFTQWKVEGQSNASLGELKQLS----RLTTL 386
EIRP L+ L++L++ + + +E + L L +L+ L++L
Sbjct: 224 EMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSL--IERNAFDGLASLVELNLAHNNLSSL 281
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440 | Back alignment and structure |
|---|
Score = 74.4 bits (183), Expect = 5e-14
Identities = 34/138 (24%), Positives = 58/138 (42%), Gaps = 7/138 (5%)
Query: 248 IPDPFFEGMTELRVLDLTGF-RFHSLPS-SLGCLINLRTLSLENCLVVDVAIIGDLKKLE 305
IP F + LR LDL R + + L NLR L+L C + ++ + L KL+
Sbjct: 151 IPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPNLTPLIKLD 210
Query: 306 ILSLKHSSIEQLPREI-GQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYM-GNSFTQ 363
L L + + + L L+ L + +++ I N NL L E+ + N+ T
Sbjct: 211 ELDLSGNHLSAIRPGSFQGLMHLQKLWMIQS-QIQVIERNAFDNLQSLVEINLAHNNLT- 268
Query: 364 WKVEGQSNASLGELKQLS 381
+ L L+++
Sbjct: 269 -LLPHDLFTPLHHLERIH 285
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440 | Back alignment and structure |
|---|
Score = 71.3 bits (175), Expect = 4e-13
Identities = 35/160 (21%), Positives = 62/160 (38%), Gaps = 21/160 (13%)
Query: 241 TENLSLQ------IPDPFFEGMTELRVLDLTGFRFHSLPS-SLGCLINLRTLSLENCLVV 293
T L+L I F+ + L +L L+ ++ + L NL TL L + +
Sbjct: 66 TRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLT 125
Query: 294 DVA--IIGDLKKLEILSLKHSSIEQLPREI-GQLTCLKLLDLSNCSKLKEIRPNVISNLT 350
+ L KL+ L L+++ IE +P ++ L+ LDL +L I L+
Sbjct: 126 TIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLS 185
Query: 351 RLEELYM-GNSFTQWKVEGQSNASLGELKQLSRLTTLEVH 389
L L + + + L L +L L++
Sbjct: 186 NLRYLNLAMCNLR----------EIPNLTPLIKLDELDLS 215
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567 | Back alignment and structure |
|---|
Score = 73.6 bits (180), Expect = 1e-13
Identities = 33/233 (14%), Positives = 79/233 (33%), Gaps = 11/233 (4%)
Query: 127 DLLRYVMGLRLLTNADTLEAARNRVHTLIDNLKSASLLFDGDSEDHAKMHRIIHAIAVSI 186
R L + + + +++ K L + + ++ A+ +
Sbjct: 340 CWCRDSATDEQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLL 399
Query: 187 AAEKLLFNIQNVADLKEELDKIDEAPTAISIPFRGIYELPERLGFLKLKLFLFFTENLSL 246
++ L + + +D A + + + E L
Sbjct: 400 YEKETLQYFSTL----KAVD-PMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLT 454
Query: 247 QIPDPFFEGMTELRVLDLTGFRFHSLPSSLGCLINLRTLSLENCLVVDVAIIGDLKKLEI 306
+ E + + LDL+ R +LP +L L L L + + +V + +L +L+
Sbjct: 455 VLC--HLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDGVANLPRLQE 512
Query: 307 LSLKHSSIEQLP--REIGQLTCLKLLDLSN--CSKLKEIRPNVISNLTRLEEL 355
L L ++ ++Q + + L LL+L + + I+ + L + +
Sbjct: 513 LLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSI 565
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567 | Back alignment and structure |
|---|
Score = 44.0 bits (103), Expect = 2e-04
Identities = 31/198 (15%), Positives = 67/198 (33%), Gaps = 28/198 (14%)
Query: 190 KLLFNIQNVADLKEELDKIDEAPTAISIPFRGIYELPERLGFLKLKLFLFFTENLSLQIP 249
+ + + + ++K + + + + EL + L + L L
Sbjct: 343 RDSATDEQLFRCELSVEKSTVLQSELE-SCKELQELEPENKWCLLTIILLMRALDPLLYE 401
Query: 250 DPFFEGMTELRVLDLTGFRFHSLPSSLGCLINLRTLSLENCLVVDVAIIGDLKKLEILSL 309
+ + L+ +D + S L+ + + + + +L L
Sbjct: 402 KETLQYFSTLKAVDPMRAAYLDDLRS-------------KFLLENSVLKMEYADVRVLHL 448
Query: 310 KHSSIEQLPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYM-GNSFTQWKVEG 368
H + L + QL + LDLS+ +L+ + P ++ L LE L N+
Sbjct: 449 AHKDLTVLC-HLEQLLLVTHLDLSHN-RLRAL-PPALAALRCLEVLQASDNALE------ 499
Query: 369 QSNASLGELKQLSRLTTL 386
++ + L RL L
Sbjct: 500 ----NVDGVANLPRLQEL 513
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549 | Back alignment and structure |
|---|
Score = 73.6 bits (181), Expect = 1e-13
Identities = 100/572 (17%), Positives = 179/572 (31%), Gaps = 116/572 (20%)
Query: 241 TENLSL------QIPDPFFEGMTELRVLDLTGFRFHSLP-SSLGCLINLRTLSLENCL-- 291
++L L I L+VL L R +++ + L +L L L +
Sbjct: 28 MKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLS 87
Query: 292 VVDVAIIGDLKKLEILSLKHSSIEQLPR--EIGQLTCLKLLDLSNCSKLKEIRPNVISNL 349
+ + G L L+ L+L + + L LT L+ L + N EIR + L
Sbjct: 88 SLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGL 147
Query: 350 TRLEELYM-GNSFTQWKVEGQSNASLGELKQLSRLTTLEVHIPDAQVMPQDLVFVELERF 408
T L EL + S N LK + + L +H+ ++ + ++ L
Sbjct: 148 TSLNELEIKALSLR--------NYQSQSLKSIRDIHHLTLHLSESAFLL-EIFADILSSV 198
Query: 409 RICIGDVWSWSDGYETSKTLKLQLNNSTYLGYGMKMLLKRTEDLHLDELAGFKNVVHELD 468
R L+L+ N + + + + + F+ V +
Sbjct: 199 R-----------------YLELRDTNLARFQFSPLPVDEVSSPMKKL---AFRGSVLTDE 238
Query: 469 DEEGFARLRHLHVHNGPEILHILNSDGRVGTFPLLESLFLHNLINLEKVCDGKVRLNEDD 528
+L + E+ + +G F ES + L +E V ++ + +
Sbjct: 239 SFNELLKLLRYILEL-SEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFY 297
Query: 529 ---------KSFSNLRIIKVEGCHRVKHLFPFSLVKNLLQLQKVKVTDCTNLKLIVGKES 579
++ I VE L P S ++L L+ + +++ + K S
Sbjct: 298 LFYDLSTVYSLLEKVKRITVENSKV--FLVPCSFSQHLKSLEFLDLSEN-LMVEEYLKNS 354
Query: 580 ENSAHKNGSISGVYFRKLHFLKLQH--LPQLTSSGFDLETPTNTQG---SNPGIIAEGDP 634
+ L L L L + +G L T N S P
Sbjct: 355 ACKGA---------WPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTF--HPMP 403
Query: 635 KDFTSLFNERVVFPSLKKLKLSSINVEKIWLNSFSAIESWGKNLTKLTVEKCGRLKFLFS 694
++ L LSS + + L L V L
Sbjct: 404 DSCQWP-------EKMRFLNLSSTGIRVVKTCIPQ-------TLEVLDVSNN-NLDSFSL 448
Query: 695 SSMVNGLEQLQQLDISHCKSMNEVINTRVGRDDNMIEMV-----FPKLVSLQLSHLPKLT 749
L +LQ+L IS N ++ + FP L+ +++S +L
Sbjct: 449 -----FLPRLQELYISR----------------NKLKTLPDASLFPVLLVMKISRN-QLK 486
Query: 750 RFGIGDSVEFPSLCQLQIACCPNLKIFICSCT 781
G SL ++ + P + CSC
Sbjct: 487 SVPDGIFDRLTSLQKIWLHTNP----WDCSCP 514
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549 | Back alignment and structure |
|---|
Score = 60.9 bits (148), Expect = 1e-09
Identities = 20/145 (13%), Positives = 50/145 (34%), Gaps = 13/145 (8%)
Query: 228 RLGFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPSSLG-CLINLRTLS 286
++ + ++ L + + + +++ + + + +P S L +L L
Sbjct: 282 KVETVTIR-RLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLD 340
Query: 287 LENCLVVDVAI-----IGDLKKLEILSLKHSSIEQLPREIGQLTC---LKLLDLSNCSKL 338
L L+V+ + G L+ L L + + + + L L LD+S
Sbjct: 341 LSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRN-TF 399
Query: 339 KEIRPNVISNLTRLEELYM-GNSFT 362
+ P+ ++ L +
Sbjct: 400 HPM-PDSCQWPEKMRFLNLSSTGIR 423
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549 | Back alignment and structure |
|---|
Score = 42.4 bits (100), Expect = 5e-04
Identities = 22/157 (14%), Positives = 55/157 (35%), Gaps = 23/157 (14%)
Query: 226 PERLGFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPSS----LGCLIN 281
+ L ++ L + S + + F + ++ +R L+L S
Sbjct: 165 SQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSP 224
Query: 282 LRTLSLENCLVVDVAI---------IGDLKKLEILSLKHSSIEQLP-------REIGQLT 325
++ L+ ++ D + I +L ++E + + E+G++
Sbjct: 225 MKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVE 284
Query: 326 CLKL--LDLSNCSKLKEIRPNVISNLTRLEELYMGNS 360
+ + L + L V S L +++ + + NS
Sbjct: 285 TVTIRRLHIPQF-YLFYDLSTVYSLLEKVKRITVENS 320
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306 | Back alignment and structure |
|---|
Score = 71.2 bits (175), Expect = 2e-13
Identities = 29/152 (19%), Positives = 59/152 (38%), Gaps = 11/152 (7%)
Query: 245 SLQIPDPFFEGMTELRVLDLTGFRFHSLPSSLGCLINLRTLSLENCL---VVDVAIIGDL 301
G T L+ LDL+ ++ S+ L L L ++ + + ++ L
Sbjct: 66 FKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSL 125
Query: 302 KKLEILSLKHSSIEQLPREI-GQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYM-GN 359
+ L L + H+ I L+ L++L ++ S + P++ + L L L +
Sbjct: 126 RNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQC 185
Query: 360 SFTQWKVEGQSNASLGELKQLS----RLTTLE 387
Q + + SL L+ L+ +L+
Sbjct: 186 QLEQ--LSPTAFNSLSSLQVLNMSHNNFFSLD 215
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306 | Back alignment and structure |
|---|
Score = 62.7 bits (153), Expect = 1e-10
Identities = 39/159 (24%), Positives = 65/159 (40%), Gaps = 15/159 (9%)
Query: 238 LFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPSSLGC---LINLRTLSL-ENCLVV 293
L N +P F+ +T+L L L+ +L+ L L N ++
Sbjct: 33 LELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT 92
Query: 294 DVAIIGDLKKLEILSLKHSSIEQLPRE--IGQLTCLKLLDLSNCSKLKEIRPNVISNLTR 351
+ L++LE L +HS+++Q+ L L LD+S+ + + + L+
Sbjct: 93 MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHT-HTRVAFNGIFNGLSS 151
Query: 352 LEELYM-GNSFTQWKVEGQSNASLGELKQLSRLTTLEVH 389
LE L M GNSF Q N +L LT L++
Sbjct: 152 LEVLKMAGNSF-------QENFLPDIFTELRNLTFLDLS 183
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306 | Back alignment and structure |
|---|
Score = 62.0 bits (151), Expect = 2e-10
Identities = 28/146 (19%), Positives = 52/146 (35%), Gaps = 11/146 (7%)
Query: 222 IYELPERLGFLKLK--LFLFFTENLSLQIPDP-FFEGMTELRVLDLTGFRFHSLPS-SLG 277
+ + FL L+ L F + Q+ + F + L LD++ +
Sbjct: 90 VITMSS--NFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFN 147
Query: 278 CLINLRTLSLENCLVVDV---AIIGDLKKLEILSLKHSSIEQLPREI-GQLTCLKLLDLS 333
L +L L + + I +L+ L L L +EQL L+ L++L++S
Sbjct: 148 GLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMS 207
Query: 334 NCSKLKEIRPNVISNLTRLEELYMGN 359
+ + L L+ L
Sbjct: 208 HN-NFFSLDTFPYKCLNSLQVLDYSL 232
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306 | Back alignment and structure |
|---|
Score = 53.9 bits (130), Expect = 9e-08
Identities = 24/119 (20%), Positives = 42/119 (35%), Gaps = 10/119 (8%)
Query: 247 QIPDPFFEGMTELRVLDLTGFRFHSLPSS-LGCLINLRTLSLENCLVVDVAIIGD----L 301
+P + L+L + SLP L L LSL + +
Sbjct: 21 SVPTGIP---SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGT 77
Query: 302 KKLEILSLKHSSIEQLPREIGQLTCLKLLDLSNCSKLKEIRP-NVISNLTRLEELYMGN 359
L+ L L + + + L L+ LD + LK++ +V +L L L + +
Sbjct: 78 TSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHS-NLKQMSEFSVFLSLRNLIYLDISH 135
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306 | Back alignment and structure |
|---|
Score = 48.1 bits (115), Expect = 5e-06
Identities = 19/104 (18%), Positives = 38/104 (36%), Gaps = 6/104 (5%)
Query: 237 FLFFTENLSLQ-IPDPFFEGMTELRVLDLTGFRFHSLPS-SLGCLINLRTLSLENC--LV 292
L N + F + L LDL+ + L + L +L+ L++ +
Sbjct: 154 VLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFS 213
Query: 293 VDVAIIGDLKKLEILSLKHSSIEQLPREI--GQLTCLKLLDLSN 334
+D L L++L + I ++ + L L+L+
Sbjct: 214 LDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQ 257
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 | Back alignment and structure |
|---|
Score = 72.7 bits (179), Expect = 2e-13
Identities = 36/161 (22%), Positives = 66/161 (40%), Gaps = 21/161 (13%)
Query: 238 LFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSL---PSSLGCLINLRTLSLENC--LV 292
++ + N LQ+ F + L+ L L ++ PS L NL L L N
Sbjct: 435 IYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIAN 494
Query: 293 VDVAIIGDLKKLEILSLKHSSIEQLPRE---------IGQLTCLKLLDLSNCSKLKEIRP 343
++ ++ L+KLEIL L+H+++ +L + + L+ L +L+L + EI
Sbjct: 495 INDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESN-GFDEIPV 553
Query: 344 NVISNLTRLEELYM-GNSFTQWKVEGQSNASLGELKQLSRL 383
V +L L+ + + N+ + L L
Sbjct: 554 EVFKDLFELKIIDLGLNNLN-----TLPASVFNNQVSLKSL 589
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 | Back alignment and structure |
|---|
Score = 72.7 bits (179), Expect = 3e-13
Identities = 83/489 (16%), Positives = 172/489 (35%), Gaps = 87/489 (17%)
Query: 247 QIPDPFFEGMTELRVLDLTGFRFHSL-PSSLGCLINLRTLSLENCLV--VDVAIIGDLKK 303
Q+PD T + VL+LT + L ++ L +L + + ++ + L
Sbjct: 18 QVPDDLP---TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPM 74
Query: 304 LEILSLKHSSIEQLPRE-IGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMG-NSF 361
L++L+L+H+ + QL + T L L L + +++I+ N L L + N
Sbjct: 75 LKVLNLQHNELSQLSDKTFAFCTNLTELHLMSN-SIQKIKNNPFVKQKNLITLDLSHNGL 133
Query: 362 TQWKVEGQSNASLGELKQLS----RLTTLEVHIPDAQVMPQDLVFVELERFRICIGDVWS 417
+ + + L L++L ++ L+ ++L +
Sbjct: 134 SS--TKLGTQVQLENLQELLLSNNKIQALK---------SEELDIFANSSLK-------- 174
Query: 418 WSDGYETSKTLKLQLNNSTYLGYGMKMLLKRTEDLHLDELAGFKNVVHELDDEEGFARLR 477
L+L N G + R L L+ + ++ +L E +R
Sbjct: 175 ---------KLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIR 225
Query: 478 HLHVHNGPEILHILNSDGRVGTFPLLESLFL-HNLINLEKVCDGKVRLNEDD-KSFSNLR 535
+L + N ++ N+ + L L L +N +N + D L
Sbjct: 226 NLSLSNS-QLSTTSNTTFLGLKWTNLTMLDLSYNNLN---------VVGNDSFAWLPQLE 275
Query: 536 IIKVEGCHRVKHLFPFSLVKNLLQLQKVKVTDCTNLKLIVGKESENSAHKNGSISGVYFR 595
+E + ++HLF SL L ++ + + + + + S +
Sbjct: 276 YFFLEYNN-IQHLFSHSL-HGLFNVRYLNLKR--SFTKQSISLASLPKIDDFSFQW--LK 329
Query: 596 KLHFLKLQH--LPQLTSSGF---------DLETPTNTQGSNPGIIAEGDPKDFTSLFNER 644
L L ++ +P + S+ F L ++ + + F SL +
Sbjct: 330 CLEHLNMEDNDIPGIKSNMFTGLINLKYLSL-------SNSFTSLRTLTNETFVSLAH-- 380
Query: 645 VVFPSLKKLKLSSINVEKIWLNSFSAIESWGKNLTKLTVEKCGRLKFLFSSSMVNGLEQL 704
L L L+ + KI ++FS + +L L + + + GLE +
Sbjct: 381 ---SPLHILNLTKNKISKIESDAFSWL----GHLEVLDLGLN-EIGQELTGQEWRGLENI 432
Query: 705 QQLDISHCK 713
++ +S+ K
Sbjct: 433 FEIYLSYNK 441
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 | Back alignment and structure |
|---|
Score = 70.8 bits (174), Expect = 9e-13
Identities = 94/531 (17%), Positives = 159/531 (29%), Gaps = 105/531 (19%)
Query: 247 QIPDPFFEGMTELRVLDLTGFRFHSL-PSSLGCLINLRTLSL-ENCL-VVDVAIIGDLKK 303
Q+ D F T L L L + + NL TL L N L + L+
Sbjct: 87 QLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLEN 146
Query: 304 LEILSLKHSSIEQLPRE---IGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYM-GN 359
L+ L L ++ I+ L E I + LK L+LS+ ++KE P + RL L++
Sbjct: 147 LQELLLSNNKIQALKSEELDIFANSSLKKLELSSN-QIKEFSPGCFHAIGRLFGLFLNNV 205
Query: 360 SFTQWKVEGQSNASLGELKQLSRLTTLEVHIPDAQVMPQDLVFVELERFRICIGDVWSWS 419
L + + L + F+ L+ +
Sbjct: 206 QLG-----PSLTEKLCLELANTSIRNLSLSNSQLSTTSNT-TFLGLKWTNL--------- 250
Query: 420 DGYETSKTLKLQLNNSTYLGYGMKMLLKRTEDLHLDELAGFKNVVHELDDE--EGFARLR 477
L L NN +G L + E L+ N + L G +R
Sbjct: 251 ------TMLDLSYNNLNVVGNDSFAWLPQLEYFFLEY-----NNIQHLFSHSLHGLFNVR 299
Query: 478 HLHVHNGPEILHILNSDGRVGTFPLLESLFLHNLINLEKVCDGKVRLNEDDKSFSNLRII 537
+L++ I + P ++ L LE + + +++ I
Sbjct: 300 YLNLKRSFTKQSISLAS-----LPKIDDFSFQWLKCLEHL----------NMEDNDIPGI 344
Query: 538 KVEGCHRVKHLFPFSLVKNLLQLQKVKVTDCTNLKLIVGKE---SENSAHKNGSISGVY- 593
K + +L SL + L+ + +L ++N IS +
Sbjct: 345 KSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNK------ISKIES 398
Query: 594 --FRKLHFLKLQHLPQLTSSGFDLETPTNTQGSNPGI---------IAEGDPKDFTSLFN 642
F L L+ L L + E I + F +
Sbjct: 399 DAFSWLG--HLEVL-DLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALV-- 453
Query: 643 ERVVFPSLKKLKLSSINVEKIWLNSFSAIESWGKNLTKLTVEKCGRLKFL---------F 693
PSL++L L + ++S L L L
Sbjct: 454 -----PSLQRLMLRR--------VALKNVDSSPSPFQPLR-----NLTILDLSNNNIANI 495
Query: 694 SSSMVNGLEQLQQLDISHCKSMNEVINTRVGRDDNMIEMVFPKLVSLQLSH 744
+ M+ GLE+L+ LD+ H + G ++ L L L
Sbjct: 496 NDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKG-LSHLHILNLES 545
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 | Back alignment and structure |
|---|
Score = 61.6 bits (150), Expect = 8e-10
Identities = 35/173 (20%), Positives = 66/173 (38%), Gaps = 13/173 (7%)
Query: 219 FRGIYELPERLGFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPSSLGC 278
G++ + L + + +I D F+ + L L++ + S++
Sbjct: 292 LHGLFNV-RYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFT 350
Query: 279 -LINLRTLSLENCLVVDVAIIGD------LKKLEILSLKHSSIEQLPRE-IGQLTCLKLL 330
LINL+ LSL N + + L IL+L + I ++ + L L++L
Sbjct: 351 GLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVL 410
Query: 331 DLSNCSKLKEIRPNVISNLTRLEELYMGNSFTQWKVEGQSNASLGELKQLSRL 383
DL +E+ L + E+Y+ + K + S + L RL
Sbjct: 411 DLGLNEIGQELTGQEWRGLENIFEIYLSYN----KYLQLTRNSFALVPSLQRL 459
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 | Back alignment and structure |
|---|
Score = 60.8 bits (148), Expect = 1e-09
Identities = 28/153 (18%), Positives = 52/153 (33%), Gaps = 17/153 (11%)
Query: 243 NLSLQIPDPF-FEGMTELRVLDLTGFRFHSL-PSSLGCLINLRTLSLENC-----LVVDV 295
+ + + L+ L+L+ + P + L L L N L +
Sbjct: 156 KIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKL 215
Query: 296 AIIGDLKKLEILSLKHSSIEQLPREIG---QLTCLKLLDLSNCSKLKEIRPNVISNLTRL 352
+ + LSL +S + + T L +LDLS L + + + L +L
Sbjct: 216 CLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYN-NLNVVGNDSFAWLPQL 274
Query: 353 EELYM-GNSFTQWKVEGQSNASLGELKQLSRLT 384
E ++ N+ + SL L + L
Sbjct: 275 EYFFLEYNNIQ-----HLFSHSLHGLFNVRYLN 302
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 | Back alignment and structure |
|---|
Score = 60.4 bits (147), Expect = 2e-09
Identities = 31/168 (18%), Positives = 57/168 (33%), Gaps = 26/168 (15%)
Query: 237 FLFFTENLSLQIPDPFFEGMTELRVLDLTG---------FRFHSL-PSSLGCLINLRTLS 286
+ F N + G+ +R L+L + S L L L+
Sbjct: 276 YFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLN 335
Query: 287 LENCLVVDV--AIIGDLKKLEILSLKHSSIEQLPREIGQL-----TCLKLLDLSNCSKLK 339
+E+ + + + L L+ LSL +S + L +L+L+ K+
Sbjct: 336 MEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKN-KIS 394
Query: 340 EIRPNVISNLTRLEELYM-GNSFTQWKVEGQSNASLGELKQLSRLTTL 386
+I + S L LE L + N Q + E + L + +
Sbjct: 395 KIESDAFSWLGHLEVLDLGLNEIGQ-------ELTGQEWRGLENIFEI 435
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 | Back alignment and structure |
|---|
Score = 59.2 bits (144), Expect = 4e-09
Identities = 29/131 (22%), Positives = 54/131 (41%), Gaps = 14/131 (10%)
Query: 245 SLQIPDPFFEGMTELRVLDLTGFRFHSLPSS-LGCLINLRTLSLEN----------CLVV 293
++ F+ + L +LDL+ ++ L L L L L++
Sbjct: 468 NVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGG 527
Query: 294 DVAIIGDLKKLEILSLKHSSIEQLPRE-IGQLTCLKLLDLSNCSKLKEIRPNVISNLTRL 352
+ + L L IL+L+ + +++P E L LK++DL L + +V +N L
Sbjct: 528 PIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLN-NLNTLPASVFNNQVSL 586
Query: 353 EELYM-GNSFT 362
+ L + N T
Sbjct: 587 KSLNLQKNLIT 597
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 | Back alignment and structure |
|---|
Score = 55.4 bits (134), Expect = 5e-08
Identities = 38/158 (24%), Positives = 58/158 (36%), Gaps = 15/158 (9%)
Query: 238 LFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSL-PSSLGCLINLRTLSLENC----LV 292
L N +I + F L LDL+ S + L NL+ L L N L
Sbjct: 102 LHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALK 161
Query: 293 VDVAIIGDLKKLEILSLKHSSIEQL-PREIGQLTCLKLLDLSNCSKLKEIRPNVIS---N 348
+ I L+ L L + I++ P + L L L+N +L +
Sbjct: 162 SEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNV-QLGPSLTEKLCLELA 220
Query: 349 LTRLEELYMGNSFTQWKVEGQSNASLGELKQLSRLTTL 386
T + L + NS ++ SN + LK + LT L
Sbjct: 221 NTSIRNLSLSNS----QLSTTSNTTFLGLK-WTNLTML 253
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 | Back alignment and structure |
|---|
Score = 52.3 bits (126), Expect = 5e-07
Identities = 75/494 (15%), Positives = 147/494 (29%), Gaps = 91/494 (18%)
Query: 248 IPDPFFEGMTELRVLDL-----TGFRFHSLPSSLGCLINLRTLSLENC--LVVDVAIIGD 300
F + L L L L L ++R LSL N
Sbjct: 186 FSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELA-NTSIRNLSLSNSQLSTTSNTTFLG 244
Query: 301 LK--KLEILSLKHSSIEQL-PREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYM 357
LK L +L L ++++ + L L+ L ++ + + + L + L +
Sbjct: 245 LKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYN-NIQHLFSHSLHGLFNVRYLNL 303
Query: 358 GNSFTQWKVEGQS-----NASLGELKQLSRLT----TLEVHIPDAQVMPQDLVFVELERF 408
SFT+ + S + S LK L L + + +L ++ L
Sbjct: 304 KRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNS 363
Query: 409 RICIGDV--WSWSDGYETS-KTLKLQLNNSTYLGYGMKMLLKRTEDLHLDELAGFKNVVH 465
+ + ++ + L L N + + L E L L N +
Sbjct: 364 FTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGL-----NEIG 418
Query: 466 ELDDEEGFARLRHLHV----HNGPEILHILNSDGRVGTFPLLESLFL-HNLINLEKVCDG 520
+ + + L ++ +N + L + + P L+ L L +
Sbjct: 419 QELTGQEWRGLENIFEIYLSYN--KYLQL--TRNSFALVPSLQRLMLRRVALK------- 467
Query: 521 KVRLNEDDKSF---SNLRIIKVEGCHRVKHLFPFSLVKNLLQLQKVKVTDCTNLKLIVGK 577
++ F NL I+ + + +++ L +L+ + + NL
Sbjct: 468 --NVDSSPSPFQPLRNLTILDLSNNN--IANINDDMLEGLEKLEILDLQHN-NLA----- 517
Query: 578 ESENSAHKNGSISGVYFRKLHFLKLQHLPQLTSSGFDLETPTNTQGSNPGIIAEGDPKDF 637
+ L+ L L +L SN E + F
Sbjct: 518 ----------RLWKHANPGGPIYFLKGLSHLHI--LNL-------ESNG--FDEIPVEVF 556
Query: 638 TSLFNERVVFPSLKKLKLSSINVEKIWLNSFSAIESWGKNLTKLTVEKCGRLKFLFSSSM 697
L LK + L N+ + + F+ +L L ++K + +
Sbjct: 557 KDL-------FELKIIDLGLNNLNTLPASVFNNQ----VSLKSLNLQKN-LITSVEKKVF 604
Query: 698 VNGLEQLQQLDISH 711
L +LD+
Sbjct: 605 GPAFRNLTELDMRF 618
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197 | Back alignment and structure |
|---|
Score = 68.4 bits (168), Expect = 2e-13
Identities = 25/143 (17%), Positives = 50/143 (34%), Gaps = 14/143 (9%)
Query: 247 QIPDPFFEGMTELRVLDLTGFRFHSLPSSLGCLINLRTLSLENCLVVDVAIIGDLKKLEI 306
+ M L + L L + + N++ L++ N + I L LE
Sbjct: 34 STANITEAQMNSLTYITLANINVTDL-TGIEYAHNIKDLTINNIHATNYNPISGLSNLER 92
Query: 307 LSLKHSSI-EQLPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGNSFTQWK 365
L + + + LT L LLD+S+ + I+ L ++ + +
Sbjct: 93 LRIMGKDVTSDKIPNLSGLTSLTLLDISHS-AHDDSILTKINTLPKVNSIDL-------- 143
Query: 366 VEGQSNASLGELKQLSRLTTLEV 388
N ++ ++ L L L+
Sbjct: 144 ---SYNGAITDIMPLKTLPELKS 163
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197 | Back alignment and structure |
|---|
Score = 61.1 bits (149), Expect = 8e-11
Identities = 31/178 (17%), Positives = 66/178 (37%), Gaps = 16/178 (8%)
Query: 187 AAEKLLFNIQNVADL-KEELDKIDEAPTAISIPFRGIYELPERLGFLKLKLFLFFTENLS 245
A L + A++ + +++ + T I++ + +L +K L
Sbjct: 24 AYLNGLLGQSSTANITEAQMNSL----TYITLANINVTDLTGIEYAHNIK-DLTINNI-- 76
Query: 246 LQIPD-PFFEGMTELRVLDLTGFRFHSL-PSSLGCLINLRTLSLENCLVVDVAI--IGDL 301
+ G++ L L + G S +L L +L L + + D + I L
Sbjct: 77 -HATNYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTL 135
Query: 302 KKLEILSLKHSSIEQLPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGN 359
K+ + L ++ + L LK L++ + + R I + +L +LY +
Sbjct: 136 PKVNSIDLSYNGAITDIMPLKTLPELKSLNIQFD-GVHDYRG--IEDFPKLNQLYAFS 190
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197 | Back alignment and structure |
|---|
Score = 43.8 bits (104), Expect = 6e-05
Identities = 13/68 (19%), Positives = 25/68 (36%), Gaps = 3/68 (4%)
Query: 251 PFFEGMTELRVLDLTGFRFHSLPSSLGCLINLRTLSLENCLVVDVAIIGDLKKLEILSLK 310
+ ++ +DL+ + L L L++L+++ V D I D KL L
Sbjct: 130 TKINTLPKVNSIDLSYNGAITDIMPLKTLPELKSLNIQFDGVHDYRGIEDFPKLNQLYAF 189
Query: 311 H---SSIE 315
+
Sbjct: 190 SQTIGGKK 197
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347 | Back alignment and structure |
|---|
Score = 69.9 bits (172), Expect = 6e-13
Identities = 33/137 (24%), Positives = 55/137 (40%), Gaps = 14/137 (10%)
Query: 251 PFFEGMTELRVLDLTGFRFHSLPSSLGCLINLRTLSLENCLVVDVAIIGDLKKLEILSLK 310
MT L L + + L L L L L + + D+ + DL KL++L++
Sbjct: 215 TPVANMTRLNSLKIGNNKITDLSP-LANLSQLTWLEIGTNQISDINAVKDLTKLKMLNVG 273
Query: 311 HSSIEQLPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYM-GNSFTQWKVEGQ 369
+ I + + L+ L L L+N +L VI LT L L++ N T
Sbjct: 274 SNQISDIS-VLNNLSQLNSLFLNNN-QLGNEDMEVIGGLTNLTTLFLSQNHIT------- 324
Query: 370 SNASLGELKQLSRLTTL 386
+ L LS++ +
Sbjct: 325 ---DIRPLASLSKMDSA 338
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347 | Back alignment and structure |
|---|
Score = 69.9 bits (172), Expect = 6e-13
Identities = 30/140 (21%), Positives = 56/140 (40%), Gaps = 15/140 (10%)
Query: 251 PFFEGMTELRVLDLTGFRFHSLPSSLGCLINLRTLSLENCLVVDVAIIGDLKKLEILSLK 310
+ +L L + + + + L L NLR L L + D++ + +L K+ L+L
Sbjct: 82 SPLSNLVKLTNLYIGTNKITDISA-LQNLTNLRELYLNEDNISDISPLANLTKMYSLNLG 140
Query: 311 HSSIEQLPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMG-NSFTQWKVEGQ 369
+ + +T L L ++ K+K++ P I+NLT L L + N
Sbjct: 141 ANHNLSDLSPLSNMTGLNYLTVTES-KVKDVTP--IANLTDLYSLSLNYNQIE------- 190
Query: 370 SNASLGELKQLSRLTTLEVH 389
+ L L+ L +
Sbjct: 191 ---DISPLASLTSLHYFTAY 207
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347 | Back alignment and structure |
|---|
Score = 69.5 bits (171), Expect = 8e-13
Identities = 27/137 (19%), Positives = 60/137 (43%), Gaps = 14/137 (10%)
Query: 251 PFFEGMTELRVLDLTGFRFHSLPSSLGCLINLRTLSLENCLVVDVAIIGDLKKLEILSLK 310
+T L + + + + L +L + N + D++ + +L +L L +
Sbjct: 193 SPLASLTSLHYFTAYVNQITDITP-VANMTRLNSLKIGNNKITDLSPLANLSQLTWLEIG 251
Query: 311 HSSIEQLPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYM-GNSFTQWKVEGQ 369
+ I + + LT LK+L++ + ++ +I ++NL++L L++ N
Sbjct: 252 TNQISDIN-AVKDLTKLKMLNVGSN-QISDISV--LNNLSQLNSLFLNNNQLG------- 300
Query: 370 SNASLGELKQLSRLTTL 386
N + + L+ LTTL
Sbjct: 301 -NEDMEVIGGLTNLTTL 316
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347 | Back alignment and structure |
|---|
Score = 66.8 bits (164), Expect = 7e-12
Identities = 34/153 (22%), Positives = 64/153 (41%), Gaps = 17/153 (11%)
Query: 238 LFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPSSLGCLINLRTLSLENCLVVDVAI 297
L N +L P MT L L +T + + + L +L +LSL + D++
Sbjct: 137 LNLGANHNLSDLSPL-SNMTGLNYLTVTESKVKDVTP-IANLTDLYSLSLNYNQIEDISP 194
Query: 298 IGDLKKLEILSLKHSSIEQLPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYM 357
+ L L + + I + + +T L L + N K+ ++ P ++NL++L L +
Sbjct: 195 LASLTSLHYFTAYVNQITDIT-PVANMTRLNSLKIGNN-KITDLSP--LANLSQLTWLEI 250
Query: 358 -GNSFTQWKVEGQSNASLGELKQLSRLTTLEVH 389
N + + +K L++L L V
Sbjct: 251 GTNQIS----------DINAVKDLTKLKMLNVG 273
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347 | Back alignment and structure |
|---|
Score = 65.3 bits (160), Expect = 2e-11
Identities = 23/110 (20%), Positives = 55/110 (50%), Gaps = 5/110 (4%)
Query: 251 PFFEGMTELRVLDLTGFRFHSLPSSLGCLINLRTLSLENCLVVDVAIIGDLKKLEILSLK 310
+++L L++ + + + + L L+ L++ + + D++++ +L +L L L
Sbjct: 237 SPLANLSQLTWLEIGTNQISDINA-VKDLTKLKMLNVGSNQISDISVLNNLSQLNSLFLN 295
Query: 311 HSSIEQL-PREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGN 359
++ + IG LT L L LS + +IRP +++L++++ N
Sbjct: 296 NNQLGNEDMEVIGGLTNLTTLFLSQN-HITDIRP--LASLSKMDSADFAN 342
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347 | Back alignment and structure |
|---|
Score = 58.7 bits (143), Expect = 2e-09
Identities = 28/132 (21%), Positives = 51/132 (38%), Gaps = 16/132 (12%)
Query: 259 LRVLDLTGFRFHSLPSSLGCLINLRTLSLENCLVVDVAIIGDLKKLEILSLKHSSIEQLP 318
L + + L L+ V DV +L+ + L + + +
Sbjct: 2 AATLATLPAPINQI-FPDADLAEGIRAVLQKASVTDVVTQEELESITKLVVAGEKVASIQ 60
Query: 319 REIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYM-GNSFTQWKVEGQSNASLGEL 377
I LT L+ L+L+ ++ +I P +SNL +L LY+ N T + L
Sbjct: 61 -GIEYLTNLEYLNLNGN-QITDISP--LSNLVKLTNLYIGTNKIT----------DISAL 106
Query: 378 KQLSRLTTLEVH 389
+ L+ L L ++
Sbjct: 107 QNLTNLRELYLN 118
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347 | Back alignment and structure |
|---|
Score = 42.1 bits (100), Expect = 5e-04
Identities = 14/67 (20%), Positives = 28/67 (41%), Gaps = 1/67 (1%)
Query: 251 PFFEGMTELRVLDLTGFRFHSL-PSSLGCLINLRTLSLENCLVVDVAIIGDLKKLEILSL 309
+++L L L + + +G L NL TL L + D+ + L K++
Sbjct: 281 SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRPLASLSKMDSADF 340
Query: 310 KHSSIEQ 316
+ I++
Sbjct: 341 ANQVIKK 347
|
| >3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605 | Back alignment and structure |
|---|
Score = 71.2 bits (175), Expect = 6e-13
Identities = 92/493 (18%), Positives = 142/493 (28%), Gaps = 100/493 (20%)
Query: 243 NLSLQIPDPFFEGMTELRVLDLTGFRFHSL-PSSLGCLINLRTLSLENC--LVVDVAIIG 299
N +IPD + LDL+ L S L+ L L C ++
Sbjct: 18 NFY-KIPDNLP---FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQ 73
Query: 300 DLKKLEILSLKHSSIEQLPRE-IGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYM- 357
L L L L + I+ L L+ L+ L + L + I +L L+EL +
Sbjct: 74 SLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETN-LASLENFPIGHLKTLKELNVA 132
Query: 358 GNSFTQWKVEGQSNASLGELKQLSRL----TTLEVHIPDAQVMPQDLVFVELERFRICIG 413
N + L L L ++ L + +
Sbjct: 133 HNLIQ----SFKLPEYFSNLTNLEHLDLSSNKIQSIYCTD--------LRVLHQMPL--- 177
Query: 414 DVWSWSDGYETSKTLKLQLNNSTYLGYGMKMLLKRTEDLHLDELAGFKNVVHELDDEEGF 473
+ +L L LN ++ G + R L L N +
Sbjct: 178 ----------LNLSLDLSLNPMNFIQPGAFKEI-RLHKLTLRN-----NFDSLNVMKTCI 221
Query: 474 ARLRHLHVHNGPEILHILNSDGRVGTFPLLESLFLHNLINLEKVCDGKVRLNEDDKSFSN 533
L L VH G LE L L + + RL D +
Sbjct: 222 QGLAGLEVHR--------LVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDD 273
Query: 534 LRIIKVEGCHRVKHLFPFSLVKNL--LQLQKVKVTDCTNLKLIVGKESENSAHKNGSISG 591
+ + F+ + N+ L V + + S N ++ +
Sbjct: 274 IIDL-------------FNCLTNVSSFSLVSVTIERVKDF-------SYNFGWQHLELVN 313
Query: 592 VYFRKLHFLKLQHLPQLTSSGFDLETPTNTQG---------SNPGIIAEGDPKDFTSLFN 642
F + LKL+ L +LT + + S G+ +G S F
Sbjct: 314 CKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQ--SDFG 371
Query: 643 ERVVFPSLKKLKLSSINVEKIWLNSFSAIESWGKNLTKLTVEKCG--RLKFLFSSSMVNG 700
SLK L LS N + S L +L LK + S+
Sbjct: 372 ----TTSLKYLDLSF--------NGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLS 419
Query: 701 LEQLQQLDISHCK 713
L L LDISH
Sbjct: 420 LRNLIYLDISHTH 432
|
| >3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605 | Back alignment and structure |
|---|
Score = 70.4 bits (173), Expect = 1e-12
Identities = 28/153 (18%), Positives = 53/153 (34%), Gaps = 10/153 (6%)
Query: 236 LFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPSSLGCLINLRTLSLENCL---V 292
L L G T L+ LDL+ ++ S+ L L L ++ +
Sbjct: 352 LDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQM 411
Query: 293 VDVAIIGDLKKLEILSLKHSSIEQL-PREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTR 351
+ ++ L+ L L + H+ L+ L++L ++ S + P++ + L
Sbjct: 412 SEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRN 471
Query: 352 LEELYM-GNSFTQWKVEGQSNASLGELKQLSRL 383
L L + S + L L L
Sbjct: 472 LTFLDLSQCQLE-----QLSPTAFNSLSSLQVL 499
|
| >3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605 | Back alignment and structure |
|---|
Score = 65.8 bits (161), Expect = 3e-11
Identities = 39/154 (25%), Positives = 63/154 (40%), Gaps = 14/154 (9%)
Query: 237 FLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSL--PSSLGCLINLRTLSLENCL--V 292
+L + N + + F G+ +L LD + S L NL L + + V
Sbjct: 377 YLDLSFNGVITMSSNFL-GLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRV 435
Query: 293 VDVAIIGDLKKLEILSLKHSSIEQ--LPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLT 350
I L LE+L + +S ++ LP +L L LDLS C +L+++ P ++L+
Sbjct: 436 AFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQC-QLEQLSPTAFNSLS 494
Query: 351 RLEELYM-GNSFTQWKVEGQSNASLGELKQLSRL 383
L+ L M N+F L L L
Sbjct: 495 SLQVLNMSHNNFF-----SLDTFPYKCLNSLQVL 523
|
| >3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605 | Back alignment and structure |
|---|
Score = 65.4 bits (160), Expect = 4e-11
Identities = 29/148 (19%), Positives = 50/148 (33%), Gaps = 8/148 (5%)
Query: 222 IYELPERLGFLKLKLFLFFTEN-LSLQIPDPFFEGMTELRVLDLTGFRFHSL-PSSLGCL 279
+ + L+ L F + L F + L LD++ L
Sbjct: 385 VITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGL 444
Query: 280 INLRTLSL-ENCLVVDV--AIIGDLKKLEILSLKHSSIEQL-PREIGQLTCLKLLDLSNC 335
+L L + N + I +L+ L L L +EQL P L+ L++L++S+
Sbjct: 445 SSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHN 504
Query: 336 SKLKEIRPNVISNLTRLEELYM-GNSFT 362
+ L L+ L N
Sbjct: 505 -NFFSLDTFPYKCLNSLQVLDYSLNHIM 531
|
| >3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605 | Back alignment and structure |
|---|
Score = 64.3 bits (157), Expect = 9e-11
Identities = 41/169 (24%), Positives = 64/169 (37%), Gaps = 12/169 (7%)
Query: 220 RGIYELPERLGFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSL-PSSLGC 278
Y++P+ L K L + N + F EL+VLDL+ ++ +
Sbjct: 17 LNFYKIPDNL-PFSTK-NLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQS 74
Query: 279 LINLRTLSLENC--LVVDVAIIGDLKKLEILSLKHSSIEQL-PREIGQLTCLKLLDLSNC 335
L +L TL L + + L L+ L +++ L IG L LK L++++
Sbjct: 75 LSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHN 134
Query: 336 SKLKEIRPNVISNLTRLEELYM-GNSFTQWKVEGQSNASLGELKQLSRL 383
P SNLT LE L + N L L Q+ L
Sbjct: 135 LIQSFKLPEYFSNLTNLEHLDLSSNKIQ-----SIYCTDLRVLHQMPLL 178
|
| >3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605 | Back alignment and structure |
|---|
Score = 55.0 bits (133), Expect = 8e-08
Identities = 25/160 (15%), Positives = 41/160 (25%), Gaps = 14/160 (8%)
Query: 229 LGFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPSSLGCLINLRTLSLE 288
+ L Q P + + L G S L +L L L
Sbjct: 300 FSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKG----GNAFSEVDLPSLEFLDLS 355
Query: 289 NCLVVDVAII----GDLKKLEILSLKHSSIEQLPREIGQLTCLKLLDLSNCSKLKEIRPN 344
+ L+ L L + + + L L+ LD + + + +
Sbjct: 356 RNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFS 415
Query: 345 VISNLTRLEELYM-GNSFTQWKVEGQSNASLGELKQLSRL 383
V +L L L + N L L L
Sbjct: 416 VFLSLRNLIYLDISHTHTR-----VAFNGIFNGLSSLEVL 450
|
| >3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605 | Back alignment and structure |
|---|
Score = 50.8 bits (122), Expect = 1e-06
Identities = 89/513 (17%), Positives = 151/513 (29%), Gaps = 100/513 (19%)
Query: 235 KLFLFFTENLSLQIPDPFFEGMTELRVLDLTG--FRFHSLPSSLGCLINLRTLSLENCLV 292
KL T NL+ P + L+ L++ + LP L NL L L + +
Sbjct: 104 KLVAVET-NLASLENFPIG-HLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 161
Query: 293 VDV--AIIGDLKKLEI----LSLKHSSIEQLPREIGQLTCLKLLDLSNCSKLKEIRPNVI 346
+ + L ++ + L L + + + + L L L N + I
Sbjct: 162 QSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCI 221
Query: 347 SNLTRLEE--LYMGNSFTQWKVEGQSNASLGELKQLS----RLTTLEVHIPDAQVMPQDL 400
L LE L +G + +E ++L L L+ RL L+ ++ D + L
Sbjct: 222 QGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCL 281
Query: 401 VFVELERFRIC-IGDVWSWSDGYETSKTLKLQLNNSTYLGYGMKMLLKRTEDLHLDELAG 459
V I V +S + + L+L L L
Sbjct: 282 TNVSSFSLVSVTIERVKDFSYNF-GWQHLELVNCKFGQFPTLK--------LKSLKRLTF 332
Query: 460 FKNVVHELDDEEGFARLRHLHV-HNGPEILHILNSDGRVGTFPLLESLFL-HNLINLEKV 517
N E L L + NG + L+ L L N +
Sbjct: 333 TSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQS--DFGTTSLKYLDLSFNGVI---- 386
Query: 518 CDGKVRLNEDDKSFSNLRIIKVEGCHRVKHLFPFSLVKNLLQLQKVKVTDCTNLKLIVGK 577
++ + L + + +K + FS+ +L L L +
Sbjct: 387 -----TMSSNFLGLEQLEHLDFQHS-NLKQMSEFSVFLSLRNLIY--------LDI---- 428
Query: 578 ESENSAHKNGSISGV--YFRKLHFLKLQH--------------LPQLTSSGFDLETPTNT 621
S H + +G+ L LK+ L LT DL
Sbjct: 429 -SHT--HTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTF--LDL------ 477
Query: 622 QGSNPGIIAEGDPKDFTSLFNERVVFPSLKKLKLSSINVEKIWLNSFSA-IESWGKNLTK 680
+ + P F SL SL+ L +S N+F + K L
Sbjct: 478 -SQCQ--LEQLSPTAFNSL-------SSLQVLNMSH--------NNFFSLDTFPYKCLNS 519
Query: 681 LTVEKCG--RLKFLFSSSMVNGLEQLQQLDISH 711
L V + + + L L+++
Sbjct: 520 LQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQ 552
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570 | Back alignment and structure |
|---|
Score = 70.9 bits (174), Expect = 8e-13
Identities = 90/491 (18%), Positives = 148/491 (30%), Gaps = 71/491 (14%)
Query: 257 TELRVLDLTGFRFHSLPS-SLGCLINLRTLSLENC--LVVDVAIIGDLKKLEILSLKHSS 313
+ LDL+ L S S L+ L L C ++ L L L L +
Sbjct: 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP 87
Query: 314 IEQLPREI-GQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYM-GNSFTQWKVEGQSN 371
I+ L L+ L+ L L + I +L L+EL + N S
Sbjct: 88 IQSLALGAFSGLSSLQKLVAVET-NLASLENFPIGHLKTLKELNVAHNLIQ-------SF 139
Query: 372 ASLGELKQLSRLTTLEVHIPDAQVMPQDLVFVELERFRICIGDVWSWSDGYETSKTLKLQ 431
L+ L L DL +++ I D+ + +L L
Sbjct: 140 KLPEYFSNLTNLEHL------------DLSSNKIQS--IYCTDLRVLHQMPLLNLSLDLS 185
Query: 432 LNNSTYLGYGMKMLLKRTEDLHLDELAGFKNVVHELDDEEGFARLRHLHVHNGPEILHIL 491
LN ++ G +++ L +L N + L L VH
Sbjct: 186 LNPMNFIQPGA------FKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRN 239
Query: 492 N---SDGRVGTFPLLESLFLHNLINLEKVCDGKVRLNEDDKSFSNLRIIKVEGCH--RVK 546
L +L + L + L++ F+ L + ++
Sbjct: 240 EGNLEKFDKSALEGLCNLTIEEF-RLAYL---DYYLDDIIDLFNCLTNVSSFSLVSVTIE 295
Query: 547 HLFPFSLVKNL--LQLQKVKVTDCTNLKLIVGKESENSAHKNGSI-SGVYFRKLHFLKLQ 603
+ FS L+L K LKL K +++K G+ S V L FL L
Sbjct: 296 RVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLS 355
Query: 604 H--LPQLTSSGFDLETPTNTQ----GSNPGIIAEGDPKDFTSL------------FNERV 645
L T+ + N I + L +E
Sbjct: 356 RNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFS 415
Query: 646 VF---PSLKKLKLSSINVEKIWLNSFSAIESWGKNLTKLTVEKCGRLKFLFSSSMVNGLE 702
VF +L L +S + + F+ + +L L + + F + L
Sbjct: 416 VFLSLRNLIYLDISHTHTRVAFNGIFNGLS----SLEVLKMAGN-SFQENFLPDIFTELR 470
Query: 703 QLQQLDISHCK 713
L LD+S C+
Sbjct: 471 NLTFLDLSQCQ 481
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570 | Back alignment and structure |
|---|
Score = 57.8 bits (140), Expect = 9e-09
Identities = 55/340 (16%), Positives = 99/340 (29%), Gaps = 36/340 (10%)
Query: 238 LFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSL--PSSLGCLINLRTLSLENCL--VV 293
L E + + + L+ L++ S P L NL L L + +
Sbjct: 105 LVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI 164
Query: 294 DVAIIGDLKKLEI----LSLKHSSIEQLPREIGQLTCLKLLDLSNCSKLKEIRPNVISNL 349
+ L ++ + L L + + + + L L L N + I L
Sbjct: 165 YCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGL 224
Query: 350 TRLEE--LYMGNSFTQWKVEGQSNASLGELKQLS----RLTTLEVHIPDAQVMPQDLVFV 403
LE L +G + +E ++L L L+ RL L+ ++ D + L V
Sbjct: 225 AGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNV 284
Query: 404 ELERFRICIGDVWSWSDGYETSKTLKLQLNNSTYLGYGMKMLLKRTEDLHLDELAGFKNV 463
+ D L+L N + + L L N
Sbjct: 285 SSFSLVSV--TIERVKDFSYNFGWQHLELVNCKF------GQFPTLKLKSLKRLTFTSNK 336
Query: 464 VHELDDEEGFARLRHLHV-HNGPEILHILNSDGRVGTFPLLESLFL-HNLINLEKVCDGK 521
E L L + N + L+ L L N +
Sbjct: 337 GGNAFSEVDLPSLEFLDLSRN--GLSFKGCCSQSDFGTTSLKYLDLSFNGVI-------- 386
Query: 522 VRLNEDDKSFSNLRIIKVEGCHRVKHLFPFSLVKNLLQLQ 561
++ + L + + +K + FS+ +L L
Sbjct: 387 -TMSSNFLGLEQLEHLDFQHS-NLKQMSEFSVFLSLRNLI 424
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606 | Back alignment and structure |
|---|
Score = 70.4 bits (173), Expect = 1e-12
Identities = 81/504 (16%), Positives = 149/504 (29%), Gaps = 74/504 (14%)
Query: 243 NLSLQIPDPFFEGMTELRVLDLTGFRFHSLP-SSLGCLINLRTLSLENC--LVVDVAIIG 299
LS ++PD + + +DL+ L S L+ L L C ++
Sbjct: 22 KLS-KVPDDIP---SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWH 77
Query: 300 DLKKLEILSLKHSSIEQLPRE-IGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYM- 357
L L L L + I+ LT L+ L L + I L L++L +
Sbjct: 78 GLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETK-LASLESFPIGQLITLKKLNVA 136
Query: 358 GNSFTQWKVEGQSNASLGELKQLSRLTTLEVHIPDAQVMPQDLVFVELERFRICIGDVWS 417
N + A L L + DL + ++ I + D+
Sbjct: 137 HNFIH----SCKLPAYFSNLTNLVHV---------------DLSYNYIQT--ITVNDLQF 175
Query: 418 WSDGYETSKTLKLQLNNSTYLGYGMKMLLKRTEDLHLDELAGFKNVVHELDDEEGFARLR 477
+ + + +L + LN ++ +K +L L N + L
Sbjct: 176 LRENPQVNLSLDMSLNPIDFIQDQAFQGIK-LHELTLRG-----NFNSSNIMKTCLQNLA 229
Query: 478 HLHVHNGPEILHILNSDGRVGTFPLLESLFLHNLINLEKVCDGKVRLNEDD-KSFSNLRI 536
LHVH + + ++E L + + +N+
Sbjct: 230 GLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSA 289
Query: 537 IKVEGCH--RVKHLFPFSLVKNL----LQLQKVKVTDCTNLKLIVGKESENSAHKNGSIS 590
+ + G ++ + ++L QL++ D LK + + N +
Sbjct: 290 MSLAGVSIKYLEDVPKHFKWQSLSIIRCQLKQFPTLDLPFLKSLT--LTMNKGSISFKKV 347
Query: 591 GVYFRKLHFLKLQH--LPQLTSSGFDLETPTNTQ----GSNPGIIAEGDPKDFTSL---- 640
L +L L L + + + N II + L
Sbjct: 348 A--LPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLD 405
Query: 641 --------FNERVVF---PSLKKLKLSSINVEKIWLNSFSAIESWGKNLTKLTVEKCGRL 689
E F L L +S N + + F + +L L +
Sbjct: 406 FQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGL----TSLNTLKMAGN-SF 460
Query: 690 KFLFSSSMVNGLEQLQQLDISHCK 713
K S++ L LD+S C+
Sbjct: 461 KDNTLSNVFANTTNLTFLDLSKCQ 484
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606 | Back alignment and structure |
|---|
Score = 69.3 bits (170), Expect = 3e-12
Identities = 31/170 (18%), Positives = 53/170 (31%), Gaps = 13/170 (7%)
Query: 221 GIYELPERLGFLKLKLFLFFTEN-LSLQIPDPFFEGMTELRVLDLTGFRFHSLP-SSLGC 278
G + L+ L F + L F + +L LD++
Sbjct: 387 GAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLG 446
Query: 279 LINLRTLSLENCLVVDV---AIIGDLKKLEILSLKHSSIEQLPREI-GQLTCLKLLDLSN 334
L +L TL + D + + L L L +EQ+ + L L+LL++S+
Sbjct: 447 LTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSH 506
Query: 335 CSKLKEIRPNVISNLTRLEELYM-GNSFTQWKVEGQSNASLGELKQLSRL 383
L + + + L L L N K L+
Sbjct: 507 N-NLLFLDSSHYNQLYSLSTLDCSFNRIE-----TSKGILQHFPKSLAFF 550
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606 | Back alignment and structure |
|---|
Score = 67.7 bits (166), Expect = 7e-12
Identities = 38/151 (25%), Positives = 53/151 (35%), Gaps = 16/151 (10%)
Query: 243 NLSLQIPDPFFEGMTELRVLDLTGFRFHSLP--SSLGCLINLRTLSLENCL--VVDVAII 298
I F G+ EL+ LD + S+ L L L + + I
Sbjct: 385 FNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIF 444
Query: 299 GDLKKLEILSLKHSSIEQ--LPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELY 356
L L L + +S + L T L LDLS C +L++I V L RL+ L
Sbjct: 445 LGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKC-QLEQISWGVFDTLHRLQLLN 503
Query: 357 M-GNSFTQWKVEGQSNASLGELKQLSRLTTL 386
M N+ QL L+TL
Sbjct: 504 MSHNNLLFL--------DSSHYNQLYSLSTL 526
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606 | Back alignment and structure |
|---|
Score = 65.1 bits (159), Expect = 6e-11
Identities = 34/146 (23%), Positives = 56/146 (38%), Gaps = 9/146 (6%)
Query: 243 NLSLQIPDPF-FEGMTELRVLDLTGFRFHSLPSSLGCLINLRTLSL-ENCL--VVDVAII 298
LS + G LR LDL+ + ++ L L+ L + L V + +
Sbjct: 361 ALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAF 420
Query: 299 GDLKKLEILSLKHSSIEQLPREI-GQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYM 357
L+KL L + +++ + I LT L L ++ S NV +N T L L +
Sbjct: 421 LSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDL 480
Query: 358 GNSFTQWKVEGQSNASLGELKQLSRL 383
++E S L +L L
Sbjct: 481 SKC----QLEQISWGVFDTLHRLQLL 502
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606 | Back alignment and structure |
|---|
Score = 60.4 bits (147), Expect = 2e-09
Identities = 33/126 (26%), Positives = 52/126 (41%), Gaps = 6/126 (4%)
Query: 237 FLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSL-PSSLGCLINLRTLSLENCL--VV 293
+L + I D + G+ L L LTG S P S L +L L +
Sbjct: 60 WLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASL 119
Query: 294 DVAIIGDLKKLEILSLKHSSIE--QLPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTR 351
+ IG L L+ L++ H+ I +LP LT L +DLS ++ I N + L
Sbjct: 120 ESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYN-YIQTITVNDLQFLRE 178
Query: 352 LEELYM 357
++ +
Sbjct: 179 NPQVNL 184
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606 | Back alignment and structure |
|---|
Score = 58.9 bits (143), Expect = 4e-09
Identities = 28/157 (17%), Positives = 52/157 (33%), Gaps = 10/157 (6%)
Query: 238 LFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHS--LPSSLGCLINLRTLSLENCL--VV 293
L E + + L+ L++ HS LP+ L NL + L +
Sbjct: 109 LVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTI 168
Query: 294 DVAIIGDLKKL----EILSLKHSSIEQLPREIGQLTCLKLLDLSNCSKLKEIRPNVISNL 349
V + L++ L + + I+ + + Q L L L I + NL
Sbjct: 169 TVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNL 228
Query: 350 TRLEE--LYMGNSFTQWKVEGQSNASLGELKQLSRLT 384
L L +G + +E + + L ++
Sbjct: 229 AGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDE 265
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606 | Back alignment and structure |
|---|
Score = 56.6 bits (137), Expect = 2e-08
Identities = 31/158 (19%), Positives = 52/158 (32%), Gaps = 9/158 (5%)
Query: 228 RLGFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFR---FHSLPSSLGCLINLRT 284
L +L L F E EG+ ++ + + F CL N+
Sbjct: 230 GLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSA 289
Query: 285 LSLENCLVVDVAIIGDLKKLEILSLKHSSIEQLPREIGQLTCLKLLDLSNCSKLKEIRPN 344
+SL + + + K + LS+ ++Q P L LK L L+ K
Sbjct: 290 MSLAGVSIKYLEDVPKHFKWQSLSIIRCQLKQFP--TLDLPFLKSLTLTMN-KGSISFKK 346
Query: 345 VISNLTRLEELYM-GNSFTQWKVEGQSNASLGELKQLS 381
L L L + N+ + S+ L+ L
Sbjct: 347 --VALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLD 382
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466 | Back alignment and structure |
|---|
Score = 70.0 bits (172), Expect = 1e-12
Identities = 35/140 (25%), Positives = 61/140 (43%), Gaps = 16/140 (11%)
Query: 251 PFFEGMTELRVLDLTGFRFHSLPSSLGCLINLRTLSLENCLVVDVAIIGDLKKLEILSLK 310
G+T+L L L + ++ L L L L L + D++ I +LK L L+L
Sbjct: 259 APLSGLTKLTELKLGANQISNISP-LAGLTALTNLELNENQLEDISPISNLKNLTYLTLY 317
Query: 311 HSSIEQLPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYM-GNSFTQWKVEGQ 369
++I + + LT L+ L N K+ ++ ++NLT + L N +
Sbjct: 318 FNNISDIS-PVSSLTKLQRLFFYNN-KVSDVSS--LANLTNINWLSAGHNQIS------- 366
Query: 370 SNASLGELKQLSRLTTLEVH 389
L L L+R+T L ++
Sbjct: 367 ---DLTPLANLTRITQLGLN 383
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466 | Back alignment and structure |
|---|
Score = 69.6 bits (171), Expect = 1e-12
Identities = 35/134 (26%), Positives = 51/134 (38%), Gaps = 13/134 (9%)
Query: 251 PFFEGMTELRVLDLTGFRFHSLPSSLGCLINLRTLSLENCLVVDVAIIGDLKKLEILSLK 310
+T L L T + + LG L NL LSL + D+ + L L L L
Sbjct: 193 SVLAKLTNLESLIATNNQISDITP-LGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLA 251
Query: 311 HSSIEQLPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYM-GNSFTQWKVEGQ 369
++ I L + LT L L L ++ I P ++ LT L L + N
Sbjct: 252 NNQISNLA-PLSGLTKLTELKLGAN-QISNISP--LAGLTALTNLELNENQLEDIS---- 303
Query: 370 SNASLGELKQLSRL 383
+ LK L+ L
Sbjct: 304 ---PISNLKNLTYL 314
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466 | Back alignment and structure |
|---|
Score = 69.6 bits (171), Expect = 1e-12
Identities = 29/140 (20%), Positives = 55/140 (39%), Gaps = 16/140 (11%)
Query: 251 PFFEGMTELRVLDLTGFRFHSLPSSLGCLINLRTLSLENCLVVDVAIIGDLKKLEILSLK 310
+ ++ L S+ + L NL ++ N + D+ + +L KL + +
Sbjct: 40 VSQTDLDQVTTLQADRLGIKSI-DGVEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMN 98
Query: 311 HSSIEQLPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYM-GNSFTQWKVEGQ 369
++ I + + LT L L L N ++ +I P + NLT L L + N+ +
Sbjct: 99 NNQIADIT-PLANLTNLTGLTLFNN-QITDIDP--LKNLTNLNRLELSSNTIS------- 147
Query: 370 SNASLGELKQLSRLTTLEVH 389
+ L L+ L L
Sbjct: 148 ---DISALSGLTSLQQLSFG 164
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466 | Back alignment and structure |
|---|
Score = 66.5 bits (163), Expect = 2e-11
Identities = 28/125 (22%), Positives = 60/125 (48%), Gaps = 6/125 (4%)
Query: 251 PFFEGMTELRVLDLTGFRFHSLPSSLGCLINLRTLSLENCLVVDVAIIGDLKKLEILSLK 310
G+T L L+L + + + L NL L+L + D++ + L KL+ L
Sbjct: 281 SPLAGLTALTNLELNENQLEDISP-ISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFY 339
Query: 311 HSSIEQLPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYM-GNSFTQWKVEGQ 369
++ + + + LT + L + ++ ++ P ++NLTR+ +L + ++T V +
Sbjct: 340 NNKVSDVS-SLANLTNINWLSAGHN-QISDLTP--LANLTRITQLGLNDQAWTNAPVNYK 395
Query: 370 SNASL 374
+N S+
Sbjct: 396 ANVSI 400
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466 | Back alignment and structure |
|---|
Score = 65.8 bits (161), Expect = 3e-11
Identities = 35/139 (25%), Positives = 62/139 (44%), Gaps = 17/139 (12%)
Query: 251 PFFEGMTELRVLDLTGFRFHSLPSSLGCLINLRTLSLENCLVVDVAIIGDLKKLEILSLK 310
G+T L+ L + L L L L + + V D++++ L LE L
Sbjct: 150 SALSGLTSLQQLSFG--NQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIAT 207
Query: 311 HSSIEQLPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYM-GNSFTQWKVEGQ 369
++ I + +G LT L L L+ +LK+I +++LT L +L + N +
Sbjct: 208 NNQISDIT-PLGILTNLDELSLNGN-QLKDIGT--LASLTNLTDLDLANNQIS------- 256
Query: 370 SNASLGELKQLSRLTTLEV 388
+L L L++LT L++
Sbjct: 257 ---NLAPLSGLTKLTELKL 272
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466 | Back alignment and structure |
|---|
Score = 64.2 bits (157), Expect = 8e-11
Identities = 35/140 (25%), Positives = 60/140 (42%), Gaps = 17/140 (12%)
Query: 251 PFFEGMTELRVLDLTGFRFHSLPSSLGCLINLRTLSLENCLVVDVAIIGDLKKLEILSLK 310
+T L L L + + L L NL L L + + D++ + L L+ LS
Sbjct: 106 TPLANLTNLTGLTLFNNQITDIDP-LKNLTNLNRLELSSNTISDISALSGLTSLQQLSFG 164
Query: 311 HSSIEQLPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMG-NSFTQWKVEGQ 369
+ + P + LT L+ LD+S+ K+ +I +V++ LT LE L N +
Sbjct: 165 NQVTDLKP--LANLTTLERLDISSN-KVSDI--SVLAKLTNLESLIATNNQIS------- 212
Query: 370 SNASLGELKQLSRLTTLEVH 389
+ L L+ L L ++
Sbjct: 213 ---DITPLGILTNLDELSLN 229
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466 | Back alignment and structure |
|---|
Score = 63.1 bits (154), Expect = 2e-10
Identities = 29/144 (20%), Positives = 54/144 (37%), Gaps = 17/144 (11%)
Query: 247 QIPDPF-FEGMTELRVLDLTGFRFHSLPSSLGCLINLRTLSLENCLVVDVAIIGDLKKLE 305
I F + E L S L + TL + + + + L L
Sbjct: 13 PINQIFTDTALAEKMKTVLGKTNVTDTVS-QTDLDQVTTLQADRLGIKSIDGVEYLNNLT 71
Query: 306 ILSLKHSSIEQLPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYM-GNSFTQW 364
++ ++ + + + LT L + ++N ++ +I P ++NLT L L + N T
Sbjct: 72 QINFSNNQLTDIT-PLKNLTKLVDILMNNN-QIADITP--LANLTNLTGLTLFNNQIT-- 125
Query: 365 KVEGQSNASLGELKQLSRLTTLEV 388
+ LK L+ L LE+
Sbjct: 126 --------DIDPLKNLTNLNRLEL 141
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466 | Back alignment and structure |
|---|
Score = 55.0 bits (133), Expect = 7e-08
Identities = 19/106 (17%), Positives = 37/106 (34%), Gaps = 3/106 (2%)
Query: 251 PFFEGMTELRVLDLTGFRFHSLPSSLGCLINLRTLSLENCLVVDVAIIGDLKKLEILSLK 310
+T+L+ L + + S L L N+ LS + + D+ + +L ++ L L
Sbjct: 325 SPVSSLTKLQRLFFYNNKVSDVSS-LANLTNINWLSAGHNQISDLTPLANLTRITQLGLN 383
Query: 311 HSSIEQLPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELY 356
+ P + + + I P IS+ E
Sbjct: 384 DQAWTNAPVNYKAN--VSIPNTVKNVTGALIAPATISDGGSYTEPD 427
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390 | Back alignment and structure |
|---|
Score = 69.3 bits (170), Expect = 1e-12
Identities = 28/180 (15%), Positives = 63/180 (35%), Gaps = 15/180 (8%)
Query: 220 RGIYELPERLGFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPS-SLGC 278
+ +Y E + K+ + F + ++P + ++ +L+L + + + +
Sbjct: 33 QDVYFGFEDITLNNQKI-VTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAY 91
Query: 279 LINLRTLSLENCL--VVDVAIIGDLKKLEILSLKHSSIEQLPREI-GQLTCLKLLDLSNC 335
++ L + + + ++ L +L L+ + + LPR I L L +SN
Sbjct: 92 AHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNN 151
Query: 336 SKLKEIRPNVISNLTRLEELYMGN---------SFTQWKVEGQSNASLGELKQLSRLTTL 386
L+ I + T L+ L + + S L L + L
Sbjct: 152 -NLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEEL 210
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390 | Back alignment and structure |
|---|
Score = 63.1 bits (154), Expect = 1e-10
Identities = 19/104 (18%), Positives = 37/104 (35%), Gaps = 3/104 (2%)
Query: 251 PFFEGMTELRVLDLTGFRFHSLP-SSLGCLINLRTLSLE-NCLVVDVAIIGDLKKLEILS 308
+ L +DL+ + + L L + N LV + L++L
Sbjct: 242 AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLD 301
Query: 309 LKHSSIEQLPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRL 352
L H+ + + R Q L+ L L + + ++ + L L
Sbjct: 302 LSHNHLLHVERNQPQFDRLENLYLDHN-SIVTLKLSTHHTLKNL 344
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390 | Back alignment and structure |
|---|
Score = 60.1 bits (146), Expect = 1e-09
Identities = 39/166 (23%), Positives = 65/166 (39%), Gaps = 24/166 (14%)
Query: 247 QIPDPFFEGMTELRVLDLTGFRFHSLP-----------------SSLGCLINLRTLSLEN 289
+I D F+ T L+ L L+ R + S+L I + L +
Sbjct: 155 RIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASH 214
Query: 290 CLVVDVAIIGDLKKLEILSLKHSSIEQLPREIGQLTCLKLLDLSNCSKLKEIRPNVISNL 349
+ V +L IL L+H+++ + L +DLS +L++I + +
Sbjct: 215 NSINVVR-GPVNVELTILKLQHNNLTDTA-WLLNYPGLVEVDLSYN-ELEKIMYHPFVKM 271
Query: 350 TRLEELYM-GNSFTQWKVEGQSNASLGELKQLS--RLTTLEVHIPD 392
RLE LY+ N + GQ +L L LS L +E + P
Sbjct: 272 QRLERLYISNNRLVALNLYGQPIPTLKVL-DLSHNHLLHVERNQPQ 316
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390 | Back alignment and structure |
|---|
Score = 52.0 bits (125), Expect = 4e-07
Identities = 23/131 (17%), Positives = 55/131 (41%), Gaps = 11/131 (8%)
Query: 268 RFHSLPSSLGCLINLRTLSLEN--CLVVDVAIIGDLKKLEILSLKHSSIEQLPREI-GQL 324
+ + S+L + ++ V L +I++ K+S++ +LP +
Sbjct: 9 EYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSF 68
Query: 325 TCLKLLDLSNCSKLKEIRPNVISNLTRLEELYM-GNSFTQWKVEGQSNASLGELKQLS-- 381
++LL+L++ +++EI + +++LYM N+ + ++ L L
Sbjct: 69 RQVELLNLNDL-QIEEIDTYAFAYAHTIQKLYMGFNAIRY--LPPHVFQNVPLLTVLVLE 125
Query: 382 --RLTTLEVHI 390
L++L I
Sbjct: 126 RNDLSSLPRGI 136
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285 | Back alignment and structure |
|---|
Score = 67.3 bits (165), Expect = 2e-12
Identities = 30/127 (23%), Positives = 48/127 (37%), Gaps = 6/127 (4%)
Query: 238 LFFTENLSLQ-IPDPFFEGMTELRVLDLTGFRFHSLPS-SLGCLINLRTLSLENCLVVDV 295
L ++N L+ + F G+ L L L L L L+ L L++ + +
Sbjct: 85 LDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQAL 144
Query: 296 A--IIGDLKKLEILSLKHSSIEQLPREI-GQLTCLKLLDLSNCSKLKEIRPNVISNLTRL 352
DL L L L + I +P L L L L ++ + P+ +L RL
Sbjct: 145 PDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQN-RVAHVHPHAFRDLGRL 203
Query: 353 EELYMGN 359
LY+
Sbjct: 204 MTLYLFA 210
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285 | Back alignment and structure |
|---|
Score = 61.2 bits (149), Expect = 3e-10
Identities = 34/163 (20%), Positives = 61/163 (37%), Gaps = 19/163 (11%)
Query: 241 TENLSLQ------IPDPFFEGMTELRVLDLTGFRFHSLPS-SLGCLINLRTLSLE-NCL- 291
++ + L +P F L +L L + + + L L L L N
Sbjct: 34 SQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQL 93
Query: 292 -VVDVAIIGDLKKLEILSLKHSSIEQLPREI-GQLTCLKLLDLSNCSKLKEIRPNVISNL 349
VD A L +L L L +++L + L L+ L L + L+ + + +L
Sbjct: 94 RSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDN-ALQALPDDTFRDL 152
Query: 350 TRLEELYM-GNSFTQWKVEGQSNASLGELKQLS----RLTTLE 387
L L++ GN + V ++ L L +L R+ +
Sbjct: 153 GNLTHLFLHGNRISS--VPERAFRGLHSLDRLLLHQNRVAHVH 193
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285 | Back alignment and structure |
|---|
Score = 59.6 bits (145), Expect = 1e-09
Identities = 37/160 (23%), Positives = 64/160 (40%), Gaps = 13/160 (8%)
Query: 237 FLFFTENLSLQIPDPFFEGMTELRVLDLTG-FRFHSLPSS-LGCLINLRTLSLENCLV-- 292
L+ N+ +I F G+ L LDL+ + S+ + L L TL L+ C +
Sbjct: 60 ILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQE 119
Query: 293 VDVAIIGDLKKLEILSLKHSSIEQLPREI-GQLTCLKLLDLSNCSKLKEIRPNVISNLTR 351
+ + L L+ L L+ ++++ LP + L L L L +++ + L
Sbjct: 120 LGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHG-NRISSVPERAFRGLHS 178
Query: 352 LEELYM-GNSFTQWKVEGQSNASLGELKQLS----RLTTL 386
L+ L + N V + LG L L L+ L
Sbjct: 179 LDRLLLHQNRVAH--VHPHAFRDLGRLMTLYLFANNLSAL 216
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285 | Back alignment and structure |
|---|
Score = 46.9 bits (112), Expect = 1e-05
Identities = 25/133 (18%), Positives = 46/133 (34%), Gaps = 12/133 (9%)
Query: 262 LDLTGFRFHSLPSSLGCLINLRTLSLENCL--VVDVAIIGDLKKLEILSLKHSSIEQLPR 319
++P + + + L V A + L IL L + + ++
Sbjct: 16 TSCPQQGLQAVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDA 73
Query: 320 EI-GQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYM-GNSFTQWKVEGQSNASLGEL 377
L L+ LDLS+ ++L+ + P L RL L++ ++ L L
Sbjct: 74 AAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQ--ELGPGLFRGLAAL 131
Query: 378 KQLS----RLTTL 386
+ L L L
Sbjct: 132 QYLYLQDNALQAL 144
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597 | Back alignment and structure |
|---|
Score = 68.4 bits (167), Expect = 4e-12
Identities = 28/180 (15%), Positives = 63/180 (35%), Gaps = 15/180 (8%)
Query: 220 RGIYELPERLGFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPS-SLGC 278
+ +Y E + K+ + F + ++P + ++ +L+L + + + +
Sbjct: 39 QDVYFGFEDITLNNQKI-VTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAY 97
Query: 279 LINLRTLSLENCL--VVDVAIIGDLKKLEILSLKHSSIEQLPREI-GQLTCLKLLDLSNC 335
++ L + + + ++ L +L L+ + + LPR I L L +SN
Sbjct: 98 AHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNN 157
Query: 336 SKLKEIRPNVISNLTRLEELYMGN---------SFTQWKVEGQSNASLGELKQLSRLTTL 386
L+ I + T L+ L + + S L L + L
Sbjct: 158 -NLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEEL 216
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597 | Back alignment and structure |
|---|
Score = 61.5 bits (149), Expect = 7e-10
Identities = 19/104 (18%), Positives = 37/104 (35%), Gaps = 3/104 (2%)
Query: 251 PFFEGMTELRVLDLTGFRFHSLP-SSLGCLINLRTLSLE-NCLVVDVAIIGDLKKLEILS 308
+ L +DL+ + + L L + N LV + L++L
Sbjct: 248 AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLD 307
Query: 309 LKHSSIEQLPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRL 352
L H+ + + R Q L+ L L + + ++ + L L
Sbjct: 308 LSHNHLLHVERNQPQFDRLENLYLDHN-SIVTLKLSTHHTLKNL 350
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597 | Back alignment and structure |
|---|
Score = 59.2 bits (143), Expect = 4e-09
Identities = 39/165 (23%), Positives = 65/165 (39%), Gaps = 24/165 (14%)
Query: 247 QIPDPFFEGMTELRVLDLTGFRFHSLP-----------------SSLGCLINLRTLSLEN 289
+I D F+ T L+ L L+ R + S+L I + L +
Sbjct: 161 RIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASH 220
Query: 290 CLVVDVAIIGDLKKLEILSLKHSSIEQLPREIGQLTCLKLLDLSNCSKLKEIRPNVISNL 349
+ V +L IL L+H+++ + L +DLS +L++I + +
Sbjct: 221 NSINVVR-GPVNVELTILKLQHNNLTDTA-WLLNYPGLVEVDLSYN-ELEKIMYHPFVKM 277
Query: 350 TRLEELYM-GNSFTQWKVEGQSNASLGELKQLS--RLTTLEVHIP 391
RLE LY+ N + GQ +L L LS L +E + P
Sbjct: 278 QRLERLYISNNRLVALNLYGQPIPTLKVL-DLSHNHLLHVERNQP 321
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597 | Back alignment and structure |
|---|
Score = 50.3 bits (120), Expect = 2e-06
Identities = 20/97 (20%), Positives = 46/97 (47%), Gaps = 9/97 (9%)
Query: 300 DLKKLEILSLKHSSIEQLPREI-GQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYM- 357
L +I++ K+S++ +LP + ++LL+L++ +++EI + +++LYM
Sbjct: 49 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDL-QIEEIDTYAFAYAHTIQKLYMG 107
Query: 358 GNSFTQWKVEGQSNASLGELKQLS----RLTTLEVHI 390
N+ + ++ L L L++L I
Sbjct: 108 FNAIRY--LPPHVFQNVPLLTVLVLERNDLSSLPRGI 142
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477 | Back alignment and structure |
|---|
Score = 67.8 bits (166), Expect = 6e-12
Identities = 37/150 (24%), Positives = 62/150 (41%), Gaps = 12/150 (8%)
Query: 247 QIPDPFFEGMTELRVLDLTGFRFHSLPS-SLGCLINLRTLSLE--NCLVVDVAIIGDLKK 303
IP + L VL L +++ S L L+ L + L
Sbjct: 166 SIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLN 225
Query: 304 LEILSLKHSSIEQLPRE-IGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYM-GNSF 361
L LS+ H ++ +P + L L+ L+LS + + I +++ L RL+E+ + G
Sbjct: 226 LTSLSITHCNLTAVPYLAVRHLVYLRFLNLSY-NPISTIEGSMLHELLRLQEIQLVGGQL 284
Query: 362 TQWKVEGQSNASLGELKQLS----RLTTLE 387
VE + L L+ L+ +LTTLE
Sbjct: 285 A--VVEPYAFRGLNYLRVLNVSGNQLTTLE 312
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477 | Back alignment and structure |
|---|
Score = 65.1 bits (159), Expect = 5e-11
Identities = 34/162 (20%), Positives = 59/162 (36%), Gaps = 18/162 (11%)
Query: 241 TENLSLQ------IPDPFFEGMTELRVLDLTGFRFHSLPS-SLGCLINLRTLSLENCL-- 291
T L L + F L L+L ++ + L NLRTL L +
Sbjct: 34 TRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLK 93
Query: 292 VVDVAIIGDLKKLEILSLKHSSIEQLPREI-GQLTCLKLLDLSNCSKLKEIRPNVISNLT 350
++ + + L L L + + I L + L LK L++ + L I S L
Sbjct: 94 LIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDN-DLVYISHRAFSGLN 152
Query: 351 RLEELYM-GNSFTQWKVEGQSNASLGELKQLS----RLTTLE 387
LE+L + + T + ++ + L L L + +
Sbjct: 153 SLEQLTLEKCNLT--SIPTEALSHLHGLIVLRLRHLNINAIR 192
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477 | Back alignment and structure |
|---|
Score = 63.6 bits (155), Expect = 1e-10
Identities = 35/155 (22%), Positives = 54/155 (34%), Gaps = 14/155 (9%)
Query: 238 LFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPS-SLGCLINLRTLSLENCL--VVD 294
L EN+ + F + LR L L R +P L NL L + ++
Sbjct: 61 LELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILL 120
Query: 295 VAIIGDLKKLEILSLKHSSIEQLPREI-GQLTCLKLLDLSNCSKLKEIRPNVISNLTRLE 353
+ DL L+ L + + + + L L+ L L C L I +S+L L
Sbjct: 121 DYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKC-NLTSIPTEALSHLHGLI 179
Query: 354 ELYM-GNSFTQWKVEGQSNASLGELKQLSRLTTLE 387
L + + K+L RL LE
Sbjct: 180 VLRLRHLNIN--------AIRDYSFKRLYRLKVLE 206
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477 | Back alignment and structure |
|---|
Score = 61.7 bits (150), Expect = 6e-10
Identities = 27/146 (18%), Positives = 57/146 (39%), Gaps = 7/146 (4%)
Query: 222 IYELPER-LGFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPS-SLGCL 279
I + + L L + L P L L +T ++P ++ L
Sbjct: 188 INAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHL 247
Query: 280 INLRTLSLENCLVVDVA--IIGDLKKLEILSLKHSSIEQLPREI-GQLTCLKLLDLSNCS 336
+ LR L+L + + ++ +L +L+ + L + + L L++L++S
Sbjct: 248 VYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGN- 306
Query: 337 KLKEIRPNVISNLTRLEELYM-GNSF 361
+L + +V ++ LE L + N
Sbjct: 307 QLTTLEESVFHSVGNLETLILDSNPL 332
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317 | Back alignment and structure |
|---|
Score = 66.6 bits (163), Expect = 6e-12
Identities = 21/115 (18%), Positives = 38/115 (33%), Gaps = 4/115 (3%)
Query: 247 QIPDPFFEGMTELRVLDLTGFRFHSLP--SSLGCLINLRTLSLENCLVVDVAIIGDLKKL 304
+ D + ++ LDL ++ L L+L+ + DV KL
Sbjct: 134 MLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVVFAKL 193
Query: 305 EILSLKHSSIEQLPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGN 359
+ L L + + + E + + L N KL I + LE +
Sbjct: 194 KTLDLSSNKLAFMGPEFQSAAGVTWISLRNN-KLVLI-EKALRFSQNLEHFDLRG 246
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317 | Back alignment and structure |
|---|
Score = 60.4 bits (147), Expect = 7e-10
Identities = 24/156 (15%), Positives = 50/156 (32%), Gaps = 24/156 (15%)
Query: 247 QIPDPFFEGMTELRVLDLTGFRFHSLP-SSLGCLINLRTLSLENCLVVDVAIIGDLKKLE 305
Q + ++ LDL+G + + L L L+L + ++ + + L L
Sbjct: 24 QALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLDLESLSTLR 83
Query: 306 ILSLKHSSIEQLPR-----------------EIGQLTCLKLLDLSNCSKLKEIRPNVISN 348
L L ++ +++L + K + L+N K+ +R
Sbjct: 84 TLDLNNNYVQELLVGPSIETLHAANNNISRVSCSRGQGKKNIYLANN-KITMLRDLDEGC 142
Query: 349 LTRLEELYM-GNSFTQWKVEGQSNASLGELKQLSRL 383
+R++ L + N L L
Sbjct: 143 RSRVQYLDLKLNEID----TVNFAELAASSDTLEHL 174
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317 | Back alignment and structure |
|---|
Score = 58.1 bits (141), Expect = 4e-09
Identities = 15/140 (10%), Positives = 44/140 (31%), Gaps = 3/140 (2%)
Query: 249 PDPFFEGMTELRVLDLTGFRFHSLPSSLGCLINLRTLSLENCLVVDV-AIIGDLKKLEIL 307
L L+L + + + L+TL L + + + + +
Sbjct: 161 FAELAASSDTLEHLNLQYNFIYDVKGQV-VFAKLKTLDLSSNKLAFMGPEFQSAAGVTWI 219
Query: 308 SLKHSSIEQLPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGNSFTQWKVE 367
SL+++ + + + + L+ DL + S R++ + + + +
Sbjct: 220 SLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVA-KQTVKKLTGQ 278
Query: 368 GQSNASLGELKQLSRLTTLE 387
+ ++ L +
Sbjct: 279 NEEECTVPTLGHYGAYCCED 298
|
| >1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605 | Back alignment and structure |
|---|
Score = 67.4 bits (164), Expect = 1e-11
Identities = 37/146 (25%), Positives = 64/146 (43%), Gaps = 11/146 (7%)
Query: 238 LFFTENLSLQIPD-PFFEGMTELRVLDLTGFRFHSLPSSLGCLINLRTLSLENCLVVDVA 296
LF EN +I D + + +L+ L L + + L L L +L L N + D+
Sbjct: 92 LFLDEN---KIKDLSSLKDLKKLKSLSLEHNGISDI-NGLVHLPQLESLYLGNNKITDIT 147
Query: 297 IIGDLKKLEILSLKHSSIEQLPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELY 356
++ L KL+ LSL+ + I + + LT L+ L LS + ++R ++ L L+ L
Sbjct: 148 VLSRLTKLDTLSLEDNQISDIV-PLAGLTKLQNLYLSKN-HISDLRA--LAGLKNLDVLE 203
Query: 357 M-GNSFTQWKVEGQSN-ASLGELKQL 380
+ + QSN +K
Sbjct: 204 LFSQECLNKPINHQSNLVVPNTVKNT 229
|
| >1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605 | Back alignment and structure |
|---|
Score = 65.1 bits (158), Expect = 5e-11
Identities = 37/136 (27%), Positives = 63/136 (46%), Gaps = 16/136 (11%)
Query: 252 FFEGMTELRVLDLTGFRFHSLPSSLGCLINLRTLSLENCLVVDVAIIGDLKKLEILSLKH 311
+ + + L L G + + L L NL L L+ + D++ + DLKKL+ LSL+H
Sbjct: 60 GIQYLPNVTKLFLNGNKLTDI-KPLTNLKNLGWLFLDENKIKDLSSLKDLKKLKSLSLEH 118
Query: 312 SSIEQLPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYM-GNSFTQWKVEGQS 370
+ I + + L L+ L L N K+ +I +S LT+L+ L + N +
Sbjct: 119 NGISDIN-GLVHLPQLESLYLGNN-KITDITV--LSRLTKLDTLSLEDNQIS-------- 166
Query: 371 NASLGELKQLSRLTTL 386
+ L L++L L
Sbjct: 167 --DIVPLAGLTKLQNL 180
|
| >1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605 | Back alignment and structure |
|---|
Score = 57.8 bits (139), Expect = 1e-08
Identities = 24/116 (20%), Positives = 44/116 (37%), Gaps = 13/116 (11%)
Query: 274 SSLGCLINLRTLSLENCLVVDVAIIGDLKKLEILSLKHSSIEQLPREIGQLTCLKLLDLS 333
+L+ V D +L ++ + +S I+ + I L + L L+
Sbjct: 15 FPDDAFAETIKDNLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLN 73
Query: 334 NCSKLKEIRPNVISNLTRLEELYMGNSFTQWKVEGQSNASLGELKQLSRLTTLEVH 389
KL +I+P ++NL L L++ L LK L +L +L +
Sbjct: 74 GN-KLTDIKP--LTNLKNLGWLFLDE---------NKIKDLSSLKDLKKLKSLSLE 117
|
| >1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605 | Back alignment and structure |
|---|
Score = 42.0 bits (98), Expect = 7e-04
Identities = 13/105 (12%), Positives = 32/105 (30%), Gaps = 13/105 (12%)
Query: 282 LRTLSLENCLVVDVAIIGDLKKLEILSLKHSSIEQLPREIGQLTCLKLLDLSNCSKLKEI 341
+ + + + + +LK S+ +L + + +N +K +
Sbjct: 1 MGETITVSTPIKQIFPDDAFAETIKDNLKKKSVTDAV-TQNELNSIDQIIANNS-DIKSV 58
Query: 342 RPNVISNLTRLEELYMGNSFTQWKVEGQSNASLGELKQLSRLTTL 386
+ I L + +L++ + L L L L
Sbjct: 59 QG--IQYLPNVTKLFLNG---------NKLTDIKPLTNLKNLGWL 92
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844 | Back alignment and structure |
|---|
Score = 67.5 bits (165), Expect = 1e-11
Identities = 108/631 (17%), Positives = 191/631 (30%), Gaps = 77/631 (12%)
Query: 230 GFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPSS-LGCLINLRTLSLE 288
+L+L ++ L I F + LR+LDL + + L L +L L L
Sbjct: 46 FLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLY 105
Query: 289 NC----LVVDVAIIGDLKKLEILSLKHSSIEQLPRE--IGQLTCLKLLDLSNCSKLKEIR 342
C V+ +LK L L L + I L G+L LK +D S+ ++ +
Sbjct: 106 FCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSN-QIFLVC 164
Query: 343 PNVISNLT--RLEELYMGNSFTQWKVEGQSNASLGELKQLSRLTTLEVHIPDAQVMPQDL 400
+ + L L + + +V + + + L L+V V
Sbjct: 165 EHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMV-LEILDVSGNGWTVDITGN 223
Query: 401 VFVELERFRICIGDVWSWSDGYETSKTLKLQLNNSTYLGYGMKMLLKRTEDLHLDELAGF 460
+ + + +N L R+ HLD L+
Sbjct: 224 FSNAISKSQA------FSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLD-LSH- 275
Query: 461 KNVVHELDDE--EGFARLRHLHVHNGPEILHILNSDGRVGTFPLLESLFL-HNLINLEKV 517
V L+ E L+ L++ +I I +D L+ L L +NL+
Sbjct: 276 -GFVFSLNSRVFETLKDLKVLNLAYN-KINKI--ADEAFYGLDNLQVLNLSYNLLGELY- 330
Query: 518 CDGKVRLNEDDKSFSNLRIIKVEGCHRVKHLFPFSLVKNLLQLQKVKVTDC--TNLKLIV 575
+ + + I ++ H + + + K L +LQ + + D T + I
Sbjct: 331 -------SSNFYGLPKVAYIDLQKNH-IAIIQDQTF-KFLEKLQTLDLRDNALTTIHFIP 381
Query: 576 GKESENSAHKNGSISGVYFRKLHFLKLQH--LPQLTSSGFDLETPTNTQ---GSNPGIIA 630
+ + + L L L F L P N
Sbjct: 382 SIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQN----- 436
Query: 631 EGDPKDFTSLFNERV--VFPSLKKLKLSSINVEKIWLNSFSAIESWG-KNLTKLTVEKCG 687
F+S ++ PSL++L L ++ W G +L L +
Sbjct: 437 -----RFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHN- 490
Query: 688 RLKFLFSSSMVNGLEQLQQLDISHCKSMNEVINTRVGRDDNMIEMVFPKLVSLQLSHLPK 747
L L + + L L+ L ++ + + + L L +S
Sbjct: 491 YLNSL-PPGVFSHLTALRGLSLNSNR-----LTV------LSHNDLPANLEILDISR--- 535
Query: 748 LTRFGIGDSVEFPSLCQLQIACCPNLKIFICSCTEEMSSEKNIHTTQTQPLFDEKVEVSF 807
+ + F SL L I FIC C HT T + +
Sbjct: 536 -NQLLAPNPDVFVSLSVLDITHNK----FICECELSTFINWLNHTNVTIAGPPADIYCVY 590
Query: 808 AATSSYIFILDLHILSFGFLLYFLASCFSFL 838
+ S + + L + FS
Sbjct: 591 PDSFSGVSLFSLSTEGCDEEEVLKSLKFSLF 621
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844 | Back alignment and structure |
|---|
Score = 44.4 bits (105), Expect = 2e-04
Identities = 68/420 (16%), Positives = 110/420 (26%), Gaps = 98/420 (23%)
Query: 300 DLKKLEILSLKHSSIEQLPREI-GQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMG 358
L E L L + I + L L+LL+L + I NL L L +G
Sbjct: 22 VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLG 81
Query: 359 NSFTQWKVEGQSNASLGELKQLSRLTTLEVHIPDAQVMPQDLVFVELERFRICIGDVWSW 418
+ S++ L F L
Sbjct: 82 S---------------------SKIYFLH-----------PDAFQGLFHL---------- 99
Query: 419 SDGYETSKTLKLQLNNSTYLGYGMKML--LKRTEDLHLDELAGFKNVVHELDDEEGFARL 476
L+L + LK L L KN + L F +L
Sbjct: 100 -------FELRLYFCGLSDAVLKDGYFRNLKALTRLDLS-----KNQIRSLYLHPSFGKL 147
Query: 477 RHLHVHN--GPEILHILNSDGRVGTFPLLESLFLHNLINLEKVCDGKVRLNEDDKSFSNL 534
L + +I + + L L +L + L
Sbjct: 148 NSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAAN-SLYSRVSVDWGKCMNPFRNMVL 206
Query: 535 RIIKVEGCHRVKHLFPFSLVKNLLQLQKVKVTDCTNLKLIVGKESENSAHKN-GSISGVY 593
I+ V G +++ + + +L L N
Sbjct: 207 EILDVSGNG-------WTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNT 259
Query: 594 FRKLHFLKLQHLPQLTSSGFDLETPTNTQGSNPGIIAEGDPKDFTSLFNERVVFPSLKKL 653
F L ++HL DL + + + F +L LK L
Sbjct: 260 FAGLARSSVRHL--------DLS-------HGF--VFSLNSRVFETL-------KDLKVL 295
Query: 654 KLSSINVEKIWLNSFSAIESWGKNLTKLTVEKCGRLKFLFSSSMVNGLEQLQQLDISHCK 713
L+ + KI +F NL L + L L+SS+ GL ++ +D+
Sbjct: 296 NLAYNKINKIADEAF----YGLDNLQVLNLSYN-LLGELYSSNF-YGLPKVAYIDLQKNH 349
|
| >1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330 | Back alignment and structure |
|---|
Score = 65.0 bits (159), Expect = 2e-11
Identities = 30/146 (20%), Positives = 60/146 (41%), Gaps = 10/146 (6%)
Query: 245 SLQIPDPFFEGMTELRVLDLTGFRFHSLPSSLGCLINLRTLSLENCL--VVDVAIIGDLK 302
S I + F+GM +L + + ++P L +L L L+ VD A + L
Sbjct: 159 SSGIENGAFQGMKKLSYIRIADTNITTIPQGL--PPSLTELHLDGNKITKVDAASLKGLN 216
Query: 303 KLEILSLKHSSIEQLPREI-GQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYM-GNS 360
L L L +SI + L+ L L+N KL ++ P +++ ++ +Y+ N+
Sbjct: 217 NLAKLGLSFNSISAVDNGSLANTPHLRELHLNNN-KLVKV-PGGLADHKYIQVVYLHNNN 274
Query: 361 FTQWKVEGQSNASLGELKQLSRLTTL 386
+ + G + + + +
Sbjct: 275 IS--AIGSNDFCPPGYNTKKASYSGV 298
|
| >1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330 | Back alignment and structure |
|---|
Score = 56.2 bits (136), Expect = 2e-08
Identities = 33/159 (20%), Positives = 67/159 (42%), Gaps = 15/159 (9%)
Query: 243 NLSLQ-IPDPFFEGMTELRVLDLTGFRFHSLP-SSLGCLINLRTLSLENCLVVDVA--II 298
+L L+ +P + +LDL + + L NL TL L N + ++
Sbjct: 40 DLGLEKVPKDLP---PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAF 96
Query: 299 GDLKKLEILSLKHSSIEQLPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMG 358
L KLE L L + +++LP L+ L + ++ ++R +V + L ++ + +G
Sbjct: 97 APLVKLERLYLSKNQLKELPE--KMPKTLQELRVHEN-EITKVRKSVFNGLNQMIVVELG 153
Query: 359 -NSFTQWKVEGQSNASLGELKQLS----RLTTLEVHIPD 392
N +E + + +L + +TT+ +P
Sbjct: 154 TNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPP 192
|
| >1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330 | Back alignment and structure |
|---|
Score = 55.0 bits (133), Expect = 4e-08
Identities = 25/128 (19%), Positives = 50/128 (39%), Gaps = 10/128 (7%)
Query: 241 TENLSLQ------IPDPFFEGMTELRVLDLTGFRFHSL-PSSLGCLINLRTLSLENCLVV 293
T L LQ I D F+ + L L L + + P + L+ L L L +
Sbjct: 54 TALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK 113
Query: 294 DVAIIGDLKKLEILSLKHSSIEQLPREI-GQLTCLKLLDLS-NCSKLKEIRPNVISNLTR 351
++ K L+ L + + I ++ + + L + +++L N K I + +
Sbjct: 114 ELP-EKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKK 172
Query: 352 LEELYMGN 359
L + + +
Sbjct: 173 LSYIRIAD 180
|
| >1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330 | Back alignment and structure |
|---|
Score = 51.5 bits (124), Expect = 5e-07
Identities = 35/186 (18%), Positives = 66/186 (35%), Gaps = 36/186 (19%)
Query: 238 LFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPSSL-------------------GC 278
L N +I F + +L L L+ + LP +
Sbjct: 81 LILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSV 140
Query: 279 ---LINLRTLSL-ENCL---VVDVAIIGDLKKLEILSLKHSSIEQLPREIGQLTCLKLLD 331
L + + L N L ++ +KKL + + ++I +P+ G L L
Sbjct: 141 FNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQ--GLPPSLTELH 198
Query: 332 LSNCSKLKEIRPNVISNLTRLEELYM-GNSFTQWKVEGQSNASLGELKQLS----RLTTL 386
L K+ ++ + L L +L + NS + V+ S A+ L++L +L +
Sbjct: 199 LDGN-KITKVDAASLKGLNNLAKLGLSFNSIS--AVDNGSLANTPHLRELHLNNNKLVKV 255
Query: 387 EVHIPD 392
+ D
Sbjct: 256 PGGLAD 261
|
| >1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330 | Back alignment and structure |
|---|
Score = 45.0 bits (107), Expect = 6e-05
Identities = 16/113 (14%), Positives = 34/113 (30%), Gaps = 16/113 (14%)
Query: 248 IPDPFFEGMTELRVLDLTGFRFHSLPSSLGCLINLRTLSLENCLVVDVAIIGDLKKLEIL 307
+ + LR L L + +P L ++ + L N ++ +
Sbjct: 231 VDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHN---------NNISAIGSN 281
Query: 308 SLKHSSIEQLPREIGQLTCLKLLDLS-NCSKLKEIRPNVISNLTRLEELYMGN 359
P + + L N + EI+P+ + + +GN
Sbjct: 282 DFCP------PGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGN 328
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768 | Back alignment and structure |
|---|
Score = 66.5 bits (163), Expect = 2e-11
Identities = 29/137 (21%), Positives = 52/137 (37%), Gaps = 14/137 (10%)
Query: 259 LRVLDLTG----FRFHSLPSSLGCLINLRTLSL-ENCLVVDVAIIGDLKKLEILSLKHSS 313
+ +DL+ F ++ SSL L L +L L + + V+ L L L +S
Sbjct: 52 VTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVSGFKCSASLTSLDLSRNS 111
Query: 314 IE-QLP--REIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYM-GNSFTQWKVEGQ 369
+ + +G + LK L++S+ + + + L LE L + NS + G
Sbjct: 112 LSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSIS-----GA 166
Query: 370 SNASLGELKQLSRLTTL 386
+ L L
Sbjct: 167 NVVGWVLSDGCGELKHL 183
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768 | Back alignment and structure |
|---|
Score = 66.1 bits (162), Expect = 3e-11
Identities = 26/127 (20%), Positives = 45/127 (35%), Gaps = 10/127 (7%)
Query: 243 NLSLQIPDPFFEGMTELRVLDLTGFRFH-SLPSSL---GCLINLRTLSLENCLVVDVAII 298
L + L VLDL+ + L+ L++ + +
Sbjct: 137 TLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDV 196
Query: 299 GDLKKLEILSLKHSSIE-QLPREIGQLTCLKLLDLSNCSKLK-EIRPNVISNLTRLEELY 356
LE L + ++ +P +G + L+ LD+S KL + IS T L+ L
Sbjct: 197 SRCVNLEFLDVSSNNFSTGIP-FLGDCSALQHLDISGN-KLSGDF-SRAISTCTELKLLN 253
Query: 357 M-GNSFT 362
+ N F
Sbjct: 254 ISSNQFV 260
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768 | Back alignment and structure |
|---|
Score = 64.2 bits (157), Expect = 1e-10
Identities = 24/140 (17%), Positives = 51/140 (36%), Gaps = 28/140 (20%)
Query: 251 PFFEGMTELRVLDLTGFRFH-SLPSSLGCLINLRTLSLENCL--------------VVDV 295
PF + L+ LD++G + ++ L+ L++ + + +
Sbjct: 217 PFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLPLKSLQYLSL 276
Query: 296 A-----------IIGDLKKLEILSLKHSSIE-QLPREIGQLTCLKLLDLSNCSKLKEIRP 343
A + G L L L + +P G + L+ L LS+ + E+
Sbjct: 277 AENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPM 336
Query: 344 NVISNLTRLEELYMG-NSFT 362
+ + + L+ L + N F+
Sbjct: 337 DTLLKMRGLKVLDLSFNEFS 356
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768 | Back alignment and structure |
|---|
Score = 63.4 bits (155), Expect = 2e-10
Identities = 50/169 (29%), Positives = 73/169 (43%), Gaps = 17/169 (10%)
Query: 224 ELPERLGFLKLK--LFLFFTEN-LSLQIPDPFFEGMTELRVLDLTGFRFH-SLPSSLGCL 279
+ L L+ N + +IP P +EL L L+ ++PSSLG L
Sbjct: 383 PILPNLCQNPKNTLQELYLQNNGFTGKIP-PTLSNCSELVSLHLSFNYLSGTIPSSLGSL 441
Query: 280 INLRTLSL-ENCLVVDV-AIIGDLKKLEILSLKHSSIE-QLPREIGQLTCLKLLDLSNCS 336
LR L L N L ++ + +K LE L L + + ++P + T L + LSN
Sbjct: 442 SKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNN- 500
Query: 337 KLK-EIRPNVISNLTRLEELYM-GNSFTQWKVEGQSNASLGELKQLSRL 383
+L EI P I L L L + NSF+ G A LG+ + L L
Sbjct: 501 RLTGEI-PKWIGRLENLAILKLSNNSFS-----GNIPAELGDCRSLIWL 543
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768 | Back alignment and structure |
|---|
Score = 61.1 bits (149), Expect = 1e-09
Identities = 36/167 (21%), Positives = 65/167 (38%), Gaps = 16/167 (9%)
Query: 226 PERLGFLK-LKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFH-SLPSSLG--CLIN 281
+ L ++ LK+ S ++P+ L LDL+ F + +L
Sbjct: 336 MDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNT 395
Query: 282 LRTLSLENCLVVDV--AIIGDLKKLEILSLKHSSIE-QLPREIGQLTCLKLLDLSNCSKL 338
L+ L L+N + + +L L L + + +P +G L+ L+ L L L
Sbjct: 396 LQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLN-ML 454
Query: 339 K-EIRPNVISNLTRLEELYM-GNSFTQWKVEGQSNASLGELKQLSRL 383
+ EI P + + LE L + N T G+ + L L+ +
Sbjct: 455 EGEI-PQELMYVKTLETLILDFNDLT-----GEIPSGLSNCTNLNWI 495
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768 | Back alignment and structure |
|---|
Score = 59.2 bits (144), Expect = 4e-09
Identities = 42/184 (22%), Positives = 65/184 (35%), Gaps = 27/184 (14%)
Query: 224 ELPERLGFLK-LKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFH-SLPSSLGCLIN 281
+P LG L L+ + L +IP + L L L +PS L N
Sbjct: 433 TIPSSLGSLSKLRDLKLWLNMLEGEIPQELMY-VKTLETLILDFNDLTGEIPSGLSNCTN 491
Query: 282 LRTLSLENCLVVDV--AIIGDLKKLEILSLKHSSIE-QLPREIGQLTCLKLLDLS----- 333
L +SL N + IG L+ L IL L ++S +P E+G L LDL+
Sbjct: 492 LNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFN 551
Query: 334 --------NCS------KLKEIRPNVISNLTRLEELYMGNSFTQWKVEGQSNASLGELKQ 379
S + R I N +E + + +++ G + L L
Sbjct: 552 GTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQ--GIRSEQLNRLST 609
Query: 380 LSRL 383
+
Sbjct: 610 RNPC 613
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768 | Back alignment and structure |
|---|
Score = 57.2 bits (139), Expect = 2e-08
Identities = 28/145 (19%), Positives = 47/145 (32%), Gaps = 14/145 (9%)
Query: 243 NLSLQIPDPFFEGMTELRVLDLTGFRFHSLPSSLGCLINLRTLSLENCLVVDV--AIIGD 300
+S + L LD++ F + LG L+ L + + I
Sbjct: 189 KISGDVD---VSRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFSRAIST 245
Query: 301 LKKLEILSLKHSSIE-QLPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYM-G 358
+L++L++ + +P L L+ L L+ EI + L L + G
Sbjct: 246 CTELKLLNISSNQFVGPIPPLP--LKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSG 303
Query: 359 NSFTQWKVEGQSNASLGELKQLSRL 383
N F G G L L
Sbjct: 304 NHFY-----GAVPPFFGSCSLLESL 323
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768 | Back alignment and structure |
|---|
Score = 55.3 bits (134), Expect = 6e-08
Identities = 32/155 (20%), Positives = 55/155 (35%), Gaps = 25/155 (16%)
Query: 243 NLSLQIPDPFFEGMTELRVLDLTGFRFH-SLPS--SLGCLINLRTLSLENC---LVVDVA 296
+++ + F+ L LDL+ + + SLG L+ L++ + V+
Sbjct: 88 HINGSVSG--FKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVS 145
Query: 297 IIGDLKKLEILSLKHSSIE-QLPREI---GQLTCLKLLDLSNCSKLKEIRPNVISNLTRL 352
L LE+L L +SI LK L +S ++ +S L
Sbjct: 146 GGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDV-D--VSRCVNL 202
Query: 353 EELYM-GNSFTQWKVEGQSNASLGELKQLSRLTTL 386
E L + N+F+ + L S L L
Sbjct: 203 EFLDVSSNNFST---------GIPFLGDCSALQHL 228
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768 | Back alignment and structure |
|---|
Score = 45.7 bits (109), Expect = 6e-05
Identities = 22/168 (13%), Positives = 58/168 (34%), Gaps = 19/168 (11%)
Query: 224 ELPERLGFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFH---SLPSSLGCLI 280
+P + K+ ++ + + + + G L L
Sbjct: 553 TIPAAMFKQSGKIAA---NFIAGKRY-VYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLS 608
Query: 281 NLRTLSLENCLV--VDVAIIGDLKKLEILSLKHSSIE-QLPREIGQLTCLKLLDLSNCSK 337
++ + + + + L + ++ + +P+EIG + L +L+L + +
Sbjct: 609 TRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGH-ND 667
Query: 338 LK-EIRPNVISNLTRLEELYM-GNSFTQWKVEGQSNASLGELKQLSRL 383
+ I P+ + +L L L + N G+ ++ L L+ +
Sbjct: 668 ISGSI-PDEVGDLRGLNILDLSSNKLD-----GRIPQAMSALTMLTEI 709
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487 | Back alignment and structure |
|---|
Score = 64.9 bits (158), Expect = 5e-11
Identities = 21/115 (18%), Positives = 39/115 (33%), Gaps = 4/115 (3%)
Query: 247 QIPDPFFEGMTELRVLDLTGFRFHSLPSS--LGCLINLRTLSLENCLVVDVAIIGDLKKL 304
+ D + ++ LDL ++ + L L+L+ + DV KL
Sbjct: 134 MLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVVFAKL 193
Query: 305 EILSLKHSSIEQLPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGN 359
+ L L + + + E + + L N KL I + LE +
Sbjct: 194 KTLDLSSNKLAFMGPEFQSAAGVTWISLRNN-KLVLI-EKALRFSQNLEHFDLRG 246
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487 | Back alignment and structure |
|---|
Score = 58.7 bits (142), Expect = 5e-09
Identities = 71/488 (14%), Positives = 160/488 (32%), Gaps = 91/488 (18%)
Query: 253 FEGMTELRVLDLTGFRFHSLPSS-LGCLINLRTLSL-ENCL-VVDVAIIGDLKKLEILSL 309
+ ++ +T +S N++ L L N L + A + KLE+L+L
Sbjct: 6 KQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNL 65
Query: 310 KHSSIEQLPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYM-GNSFTQWKVEG 368
+ + + ++ L+ L+ LDL+N ++E+ +E L+ N+ + +V
Sbjct: 66 SSNVLYETL-DLESLSTLRTLDLNNN-YVQEL-----LVGPSIETLHAANNNIS--RVSC 116
Query: 369 QSNASLGELKQLS--RLTTLEVHIPDAQVMPQDLVFVELERFRICIGDVWSWSDGYETSK 426
+ L+ ++T L +DL R +
Sbjct: 117 SRGQGKKNI-YLANNKITML-----------RDLDEGCRSRVQ----------------- 147
Query: 427 TLKLQLNNSTYLGYG-MKMLLKRTEDLHLDELAGFKNVVHELDDEEGFARLRHLHV-HNG 484
L L+LN + + + E L+L N ++++ + FA+L+ L + N
Sbjct: 148 YLDLKLNEIDTVNFAELAASSDTLEHLNLQ-----YNFIYDVKGQVVFAKLKTLDLSSN- 201
Query: 485 PEILHILNSDGRVGTFPLLESLFL-HNLINLEKVCDGKVRLNEDDKSFSNLRIIKVEG-- 541
+ + + + L +N + V + + + NL + G
Sbjct: 202 ----KLAFMGPEFQSAAGVTWISLRNNKL---------VLIEKALRFSQNLEHFDLRGNG 248
Query: 542 --CHRVKHLFPFSLVKNLLQLQKVK-VTDCTNLKLIVGKESENSAHKNGSISGVYFRKLH 598
C ++ F + + Q VK +T + V A+ + + +L
Sbjct: 249 FHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLI 308
Query: 599 FLKLQHLPQLTSSGFDLETPTNTQGSNPGI---------IAEGDPKDFTSLFNERVVFPS 649
LK + L+ G + E + + + +
Sbjct: 309 ALKRKEHALLSGQGSETERLECERENQARQREIDALKEQYRTVIDQVTLRK-------QA 361
Query: 650 LKKLKLSSINVEKIWLNSFSAIESWGKNLTKLTVEKCGRLKFLFSSSMVNGLEQLQQLDI 709
L+ +++ N A L + G+++ ++ + L+ L+ +
Sbjct: 362 KITLEQKKKALDEQVSNGRRAH----AELDGTLQQAVGQIELQHATEEQSPLQLLRAIVK 417
Query: 710 SHCKSMNE 717
+ + E
Sbjct: 418 RYEEMYVE 425
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487 | Back alignment and structure |
|---|
Score = 58.3 bits (141), Expect = 7e-09
Identities = 24/156 (15%), Positives = 50/156 (32%), Gaps = 24/156 (15%)
Query: 247 QIPDPFFEGMTELRVLDLTGFRFHSL-PSSLGCLINLRTLSLENCLVVDVAIIGDLKKLE 305
Q + ++ LDL+G + + L L L+L + ++ + + L L
Sbjct: 24 QALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLDLESLSTLR 83
Query: 306 ILSLKHSSIEQLPR-----------------EIGQLTCLKLLDLSNCSKLKEIRPNVISN 348
L L ++ +++L + K + L+N K+ +R
Sbjct: 84 TLDLNNNYVQELLVGPSIETLHAANNNISRVSCSRGQGKKNIYLANN-KITMLRDLDEGC 142
Query: 349 LTRLEELYM-GNSFTQWKVEGQSNASLGELKQLSRL 383
+R++ L + N L L
Sbjct: 143 RSRVQYLDLKLNEIDTV----NFAELAASSDTLEHL 174
|
| >1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308 | Back alignment and structure |
|---|
Score = 63.2 bits (154), Expect = 7e-11
Identities = 47/203 (23%), Positives = 87/203 (42%), Gaps = 27/203 (13%)
Query: 188 AEKLLFNIQNVADLK--EELDKIDEAPTAISIPFRGIYELPERLGFLKLKLFLFFTENLS 245
A K+ NV D +LD I T +S G+ + L L +N
Sbjct: 21 AIKIAAGKSNVTDTVTQADLDGI----TTLSAFGTGVTTIEGVQYLNNLI-GLELKDN-- 73
Query: 246 LQIPD-PFFEGMTELRVLDLTGFRFHSLPSSLGCLINLRTLSLENCLVVDVAIIGDLKKL 304
QI D + +T++ L+L+G ++ S++ L +++TL L + + DV + L L
Sbjct: 74 -QITDLAPLKNLTKITELELSGNPLKNV-SAIAGLQSIKTLDLTSTQITDVTPLAGLSNL 131
Query: 305 EILSLKHSSIEQLPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYM-GNSFTQ 363
++L L + I + + LT L+ L + N ++ ++ P ++NL++L L N +
Sbjct: 132 QVLYLDLNQITNIS-PLAGLTNLQYLSIGNA-QVSDLTP--LANLSKLTTLKADDNKIS- 186
Query: 364 WKVEGQSNASLGELKQLSRLTTL 386
+ L L L +
Sbjct: 187 ---------DISPLASLPNLIEV 200
|
| >1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308 | Back alignment and structure |
|---|
Score = 61.2 bits (149), Expect = 4e-10
Identities = 35/135 (25%), Positives = 62/135 (45%), Gaps = 10/135 (7%)
Query: 242 ENLSL---QIPD-PFFEGMTELRVLDLTGFRFHSLPSSLGCLINLRTLSLENCLVVDVAI 297
+ L L QI D G++ L+VL L + ++ S L L NL+ LS+ N V D+
Sbjct: 110 KTLDLTSTQITDVTPLAGLSNLQVLYLDLNQITNI-SPLAGLTNLQYLSIGNAQVSDLTP 168
Query: 298 IGDLKKLEILSLKHSSIEQLPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYM 357
+ +L KL L + I + + L L + L N ++ ++ P ++N + L + +
Sbjct: 169 LANLSKLTTLKADDNKISDIS-PLASLPNLIEVHLKNN-QISDVSP--LANTSNLFIVTL 224
Query: 358 -GNSFTQWKVEGQSN 371
+ T V +N
Sbjct: 225 TNQTITNQPVFYNNN 239
|
| >1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308 | Back alignment and structure |
|---|
Score = 54.7 bits (132), Expect = 4e-08
Identities = 23/116 (19%), Positives = 46/116 (39%), Gaps = 13/116 (11%)
Query: 274 SSLGCLINLRTLSLENCLVVDVAIIGDLKKLEILSLKHSSIEQLPREIGQLTCLKLLDLS 333
L N ++ V D DL + LS + + + + L L L+L
Sbjct: 13 FPDPALANAIKIAAGKSNVTDTVTQADLDGITTLSAFGTGVTTIE-GVQYLNNLIGLELK 71
Query: 334 NCSKLKEIRPNVISNLTRLEELYMGNSFTQWKVEGQSNASLGELKQLSRLTTLEVH 389
+ ++ ++ P + NLT++ EL + S K ++ + L + TL++
Sbjct: 72 DN-QITDLAP--LKNLTKITELEL--SGNPLK-------NVSAIAGLQSIKTLDLT 115
|
| >1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308 | Back alignment and structure |
|---|
Score = 48.1 bits (115), Expect = 6e-06
Identities = 21/98 (21%), Positives = 40/98 (40%), Gaps = 3/98 (3%)
Query: 251 PFFEGMTELRVLDLTGFRFHSLPSSLGCLINLRTLSLENCLVVDVAIIGDLKKLEILSLK 310
+++L L + + S L L NL + L+N + DV+ + + L I++L
Sbjct: 167 TPLANLSKLTTLKADDNKISDI-SPLASLPNLIEVHLKNNQISDVSPLANTSNLFIVTLT 225
Query: 311 HSSIEQLPREIGQLTCLKLLDLSNCSKLKEIRPNVISN 348
+ +I P L + ++ I P IS+
Sbjct: 226 NQTITNQPVFYNNN--LVVPNVVKGPSGAPIAPATISD 261
|
| >2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270 | Back alignment and structure |
|---|
Score = 62.3 bits (152), Expect = 9e-11
Identities = 37/129 (28%), Positives = 60/129 (46%), Gaps = 11/129 (8%)
Query: 241 TENLSLQ------IPDPFFEGMTELRVLDLTGFRFHSLPSSL-GCLINLRTLSLENCL-- 291
T+ L LQ +P F +T+LR+L L + +LP+ + L NL TL + +
Sbjct: 39 TKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQ 98
Query: 292 VVDVAIIGDLKKLEILSLKHSSIEQLPREI-GQLTCLKLLDLSNCSKLKEIRPNVISNLT 350
+ + + L L L L + ++ LP + LT L L L +L+ + V LT
Sbjct: 99 ALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYN-ELQSLPKGVFDKLT 157
Query: 351 RLEELYMGN 359
L+EL + N
Sbjct: 158 SLKELRLYN 166
|
| >2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353 | Back alignment and structure |
|---|
Score = 61.7 bits (150), Expect = 3e-10
Identities = 35/168 (20%), Positives = 61/168 (36%), Gaps = 18/168 (10%)
Query: 241 TENLSLQ------IPDPFFEGMTELRVLDLTGFRFHSLPS-SLGCLINLRTLSLENCL-- 291
++L L I + + L+ L LT +++ S L +L L L
Sbjct: 54 VKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLS 113
Query: 292 VVDVAIIGDLKKLEILSLKHSSIEQLPREI--GQLTCLKLLDLSNCSKLKEIRPNVISNL 349
+ + L L L+L + + L LT L++L + N +I+ + L
Sbjct: 114 NLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGL 173
Query: 350 TRLEELYM-GNSFTQWKVEGQSNASLGELKQLS----RLTTLEVHIPD 392
T LEEL + + E +S S+ + L + L D
Sbjct: 174 TFLEELEIDASDLQ--SYEPKSLKSIQNVSHLILHMKQHILLLEIFVD 219
|
| >2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353 | Back alignment and structure |
|---|
Score = 49.3 bits (118), Expect = 3e-06
Identities = 20/123 (16%), Positives = 45/123 (36%), Gaps = 14/123 (11%)
Query: 237 FLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPSSLGCLINLRTLSLENCLVVDVA 296
L + + + F + + + L+L + S L T SL
Sbjct: 202 HLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSE--LSTGETNSLIK------- 252
Query: 297 IIGDLKKLEILSLKHSSIEQLPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELY 356
+ + S+ Q+ + + Q++ L L+ S +LK + + LT L++++
Sbjct: 253 ----KFTFRNVKITDESLFQVMKLLNQISGLLELEFSRN-QLKSVPDGIFDRLTSLQKIW 307
Query: 357 MGN 359
+
Sbjct: 308 LHT 310
|
| >1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291 | Back alignment and structure |
|---|
Score = 61.2 bits (149), Expect = 3e-10
Identities = 31/130 (23%), Positives = 57/130 (43%), Gaps = 7/130 (5%)
Query: 253 FEGMTELRVLDLTGFRFHSLPSSLGCLINLRTLSLENCLVVDVAIIGDLKKLEILSLKHS 312
+ + +L+ L L + + L L L +L L N + D+ ++ L KL+ LSL+ +
Sbjct: 108 LKDLKKLKSLSLEHNGISDI-NGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDN 166
Query: 313 SIEQLPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYM-GNSFTQWKVEGQSN 371
I + + LT L+ L LS + ++R ++ L L+ L + + QSN
Sbjct: 167 QISDIV-PLAGLTKLQNLYLSKN-HISDLRA--LAGLKNLDVLELFSQECLNKPINHQSN 222
Query: 372 -ASLGELKQL 380
+K
Sbjct: 223 LVVPNTVKNT 232
|
| >1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291 | Back alignment and structure |
|---|
Score = 60.1 bits (146), Expect = 6e-10
Identities = 38/137 (27%), Positives = 63/137 (45%), Gaps = 16/137 (11%)
Query: 251 PFFEGMTELRVLDLTGFRFHSLPSSLGCLINLRTLSLENCLVVDVAIIGDLKKLEILSLK 310
+ + + L L G + + L L NL L L+ V D++ + DLKKL+ LSL+
Sbjct: 62 QGIQYLPNVTKLFLNGNKLTDI-KPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLE 120
Query: 311 HSSIEQLPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYM-GNSFTQWKVEGQ 369
H+ I + + L L+ L L N K+ +I +S LT+L+ L + N +
Sbjct: 121 HNGISDIN-GLVHLPQLESLYLGNN-KITDITV--LSRLTKLDTLSLEDNQIS------- 169
Query: 370 SNASLGELKQLSRLTTL 386
+ L L++L L
Sbjct: 170 ---DIVPLAGLTKLQNL 183
|
| >1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291 | Back alignment and structure |
|---|
Score = 52.7 bits (127), Expect = 2e-07
Identities = 25/116 (21%), Positives = 45/116 (38%), Gaps = 13/116 (11%)
Query: 274 SSLGCLINLRTLSLENCLVVDVAIIGDLKKLEILSLKHSSIEQLPREIGQLTCLKLLDLS 333
S +L+ V D +L ++ + +S I+ + I L + L L+
Sbjct: 18 FSDDAFAETIKDNLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLN 76
Query: 334 NCSKLKEIRPNVISNLTRLEELYMGNSFTQWKVEGQSNASLGELKQLSRLTTLEVH 389
KL +I+P ++NL L L++ L LK L +L +L +
Sbjct: 77 GN-KLTDIKP--LANLKNLGWLFLDE---------NKVKDLSSLKDLKKLKSLSLE 120
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454 | Back alignment and structure |
|---|
Score = 62.3 bits (152), Expect = 3e-10
Identities = 20/113 (17%), Positives = 44/113 (38%), Gaps = 10/113 (8%)
Query: 251 PFFEGMTELRVLDLTGFRFHSLPSSLGCLINLRTLSLENCLVVDVAIIGDLKKLEILSLK 310
P + + L + LP +L ++ N ++ ++ + +L L +
Sbjct: 189 PELQNLPFLTAIYADNNSLKKLPDLPL---SLESIVAGNNILEELPELQNLPFLTTIYAD 245
Query: 311 HSSIEQLPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGNSFTQ 363
++ ++ LP L L + D L ++ P + +LT L+ N F+
Sbjct: 246 NNLLKTLPDLPPSLEALNVRDN----YLTDL-PELPQSLTFLDVSE--NIFSG 291
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454 | Back alignment and structure |
|---|
Score = 58.5 bits (142), Expect = 4e-09
Identities = 33/196 (16%), Positives = 61/196 (31%), Gaps = 47/196 (23%)
Query: 224 ELPERLGFLK-LKLFLFFTENLSLQIPDPFFEG------------MTELRVLDLTGFRFH 270
E+P +K + P E + L+L
Sbjct: 25 EMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLS 84
Query: 271 SLPSSLGCLINLRTLSLENCLVVDV-AIIGDLKKLEILSLKHSSIEQLPR---------- 319
SLP +L +L + ++ + LK L + + ++ LP
Sbjct: 85 SLPELPP---HLESLVASCNSLTELPELPQSLKSLLVDNNNLKALSDLPPLLEYLGVSNN 141
Query: 320 ------EIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGNSFTQWKVEGQSNAS 373
E+ + LK++D+ N LK++ P++ +L + N
Sbjct: 142 QLEKLPELQNSSFLKIIDVDNN-SLKKL-PDLPPSLEFIAAGN--NQLE----------E 187
Query: 374 LGELKQLSRLTTLEVH 389
L EL+ L LT +
Sbjct: 188 LPELQNLPFLTAIYAD 203
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454 | Back alignment and structure |
|---|
Score = 56.9 bits (138), Expect = 1e-08
Identities = 39/180 (21%), Positives = 69/180 (38%), Gaps = 27/180 (15%)
Query: 221 GIYELPERLGFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPSSLGCLI 280
G+ LPE L+ L + N ++P+ + L V + LP
Sbjct: 82 GLSSLPELPPHLE-SLVA--SCNSLTELPELPQS-LKSLLVDNNNLKALSDLPP------ 131
Query: 281 NLRTLSLENCLVVDVAIIGDLKKLEILSLKHSSIEQLPREIGQLTCLKLLDLSNCSKLKE 340
L L + N + + + + L+I+ + ++S+++LP L + N +L+E
Sbjct: 132 LLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLE---FIAAGNN-QLEE 187
Query: 341 IRPNVISNLTRLEELYM-GNSFTQWKVEGQS--------N--ASLGELKQLSRLTTLEVH 389
+ + NL L +Y NS + S N L EL+ L LTT+
Sbjct: 188 LPE--LQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLTTIYAD 245
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454 | Back alignment and structure |
|---|
Score = 53.1 bits (128), Expect = 2e-07
Identities = 35/163 (21%), Positives = 62/163 (38%), Gaps = 22/163 (13%)
Query: 224 ELPERLGFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPSSLGCLINLR 283
LP+ L+ L +N +P E L LD++ F L NL
Sbjct: 251 TLPDLPPSLEA---LNVRDNYLTDLP----ELPQSLTFLDVSENIFSGLSELPP---NLY 300
Query: 284 TLSLENCLVVDVAIIGDLKKLEILSLKHSSIEQLPREIGQLTCLKLLDLSNCSKLKEIRP 343
L+ + + + LE L++ ++ + +LP + L+ L S L E+ P
Sbjct: 301 YLNASSNEIRS--LCDLPPSLEELNVSNNKLIELPALPPR---LERLIASFN-HLAEV-P 353
Query: 344 NVISNLTRLEELYMGNSFTQWKVEGQSNASLGELKQLSRLTTL 386
+ NL +L Y N ++ S+ +L+ S L +
Sbjct: 354 ELPQNLKQLHVEY--NPLREFPDI---PESVEDLRMNSHLAEV 391
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454 | Back alignment and structure |
|---|
Score = 51.9 bits (125), Expect = 5e-07
Identities = 20/138 (14%), Positives = 46/138 (33%), Gaps = 17/138 (12%)
Query: 222 IYELPERLGFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPSSLGCLIN 281
+ ELP L+ L + N ++P E L+ L + P + +
Sbjct: 329 LIELPALPPRLE---RLIASFNHLAEVP----ELPQNLKQLHVEYNPLREFPDIPESVED 381
Query: 282 LRTLSLENCLVVDVAIIGDLKKLEILSLKHSSIEQLPREIGQLTCLKLLDLSNCSKLKEI 341
LR S + + L+ L ++ + + + P + L++ ++ +
Sbjct: 382 LRMNSHLA------EVPELPQNLKQLHVETNPLREFPDIPESVEDLRMNSE----RVVDP 431
Query: 342 RPNVISNLTRLEELYMGN 359
+LE+ +
Sbjct: 432 YEFAHETTDKLEDDVFEH 449
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454 | Back alignment and structure |
|---|
Score = 48.5 bits (116), Expect = 6e-06
Identities = 24/158 (15%), Positives = 43/158 (27%), Gaps = 28/158 (17%)
Query: 255 GMTELRVLDLTGFRFHSLPSSLGCLINLRTLSLENCLVVDVAIIGDL------------- 301
T L+ +P + + A G+
Sbjct: 9 SNTFLQEPLRHSSNLTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDC 68
Query: 302 --KKLEILSLKHSSIEQLPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYM-G 358
++ L L + + LP L L +C+ L E+ P + +L L
Sbjct: 69 LDRQAHELELNNLGLSSLPELPPHLESLVA----SCNSLTEL-PELPQSLKSLLVDNNNL 123
Query: 359 NSFTQW-------KVEGQSNASLGELKQLSRLTTLEVH 389
+ + V L EL+ S L ++V
Sbjct: 124 KALSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVD 161
|
| >1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290 | Back alignment and structure |
|---|
Score = 60.1 bits (146), Expect = 6e-10
Identities = 30/124 (24%), Positives = 50/124 (40%), Gaps = 4/124 (3%)
Query: 238 LFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPSSLGCLINLRTLSLENCLVVDV-A 296
L +ENL T L L+L L L L TL L + + +
Sbjct: 36 LHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGT-LPVLGTLDLSHNQLQSLPL 94
Query: 297 IIGDLKKLEILSLKHSSIEQLPREI-GQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEEL 355
+ L L +L + + + LP L L+ L L ++LK + P +++ +LE+L
Sbjct: 95 LGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKG-NELKTLPPGLLTPTPKLEKL 153
Query: 356 YMGN 359
+ N
Sbjct: 154 SLAN 157
|
| >1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290 | Back alignment and structure |
|---|
Score = 58.2 bits (141), Expect = 3e-09
Identities = 25/104 (24%), Positives = 46/104 (44%), Gaps = 2/104 (1%)
Query: 257 TELRVLDLTGFRFHSLPSS-LGCLINLRTLSLENCLVVDVAIIGDLKKLEILSLKHSSIE 315
+ +L L+ ++ + L L L+L+ + + + G L L L L H+ ++
Sbjct: 31 KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQ 90
Query: 316 QLPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGN 359
LP L L +LD+S +L + + L L+ELY+
Sbjct: 91 SLPLLGQTLPALTVLDVSFN-RLTSLPLGALRGLGELQELYLKG 133
|
| >1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290 | Back alignment and structure |
|---|
Score = 58.2 bits (141), Expect = 3e-09
Identities = 26/112 (23%), Positives = 48/112 (42%), Gaps = 4/112 (3%)
Query: 251 PFFEGMTELRVLDLTGFRFHSLPSSLGCLINLRTLSLENCL--VVDVAIIGDLKKLEILS 308
+ L LDL+ + SLP L L L + + + + L +L+ L
Sbjct: 71 QVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELY 130
Query: 309 LKHSSIEQLPREI-GQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGN 359
LK + ++ LP + L+ L L+N + L E+ +++ L L+ L +
Sbjct: 131 LKGNELKTLPPGLLTPTPKLEKLSLAN-NNLTELPAGLLNGLENLDTLLLQE 181
|
| >3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571 | Back alignment and structure |
|---|
Score = 60.4 bits (146), Expect = 1e-09
Identities = 36/240 (15%), Positives = 63/240 (26%), Gaps = 38/240 (15%)
Query: 224 ELPERLGFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPSSLGCLINLR 283
LPE L+ ++ N +P E T L VL + + LP +L
Sbjct: 134 MLPELPALLE---YINADNNQLTMLP----ELPTSLEVLSVRNNQLTFLPELPE---SLE 183
Query: 284 TLSLENCLVVDV-AIIGDLKKLE----ILSLKHSSIEQLPREIGQLTCLKLLDLSNCSKL 338
L + L+ + A+ E + + I +P I L + L + L
Sbjct: 184 ALDVSTNLLESLPAVPVRNHHSEETEIFFRCRENRITHIPENILSLDPTCTIILEDN-PL 242
Query: 339 KEIRPNVISNLTRLEELYMGN-------------------SFTQWKVEGQSNASLGELKQ 379
+S T + + + T W E + +
Sbjct: 243 SSRIRESLSQQTAQPDYHGPRIYFSMSDGQQNTLHRPLADAVTAWFPENKQSDVSQIWHA 302
Query: 380 LSRLTTLEVHIPDAQVMPQDLVFVELERFRICIGDVWSWSDGYETSKTLKLQLNNSTYLG 439
+ + FR V +W + S L+ Q
Sbjct: 303 FEHEEHANTFSAFLDRLSDTVSARNTSGFR---EQVAAWLEKLSASAELRQQSFAVAADA 359
|
| >3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571 | Back alignment and structure |
|---|
Score = 48.8 bits (116), Expect = 7e-06
Identities = 18/113 (15%), Positives = 37/113 (32%), Gaps = 10/113 (8%)
Query: 243 NLSLQIPDPFFEGMTELRVLDLTGFRFHSLPSSL--GCLINLRTLSLENCLVVDV-AIIG 299
N +F + L G + S L + L L + + +
Sbjct: 20 NTISGTYADYFSAWDKWEKQALPGENRNEAVSLLKECLINQFSELQLNRLNLSSLPDNLP 79
Query: 300 DLKKLEILSLKHSSIEQLPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRL 352
++ +L + +++ LP L L D +L + P + ++L L
Sbjct: 80 --PQITVLEITQNALISLPELPASLEYLDACDN----RLSTL-PELPASLKHL 125
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622 | Back alignment and structure |
|---|
Score = 60.3 bits (146), Expect = 2e-09
Identities = 29/166 (17%), Positives = 55/166 (33%), Gaps = 17/166 (10%)
Query: 222 IYELPERLGFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPSSLGCLIN 281
+ LP L L+ N +P + L+ L ++G R SLP
Sbjct: 193 LASLPTLPSELY---KLWAYNNRLTSLP----ALPSGLKELIVSGNRLTSLPVLPS---E 242
Query: 282 LRTLSLENCLVVDV-AIIGDLKKLEILSLKHSSIEQLPREIGQLTCLKLLDLSNCSKLKE 340
L+ L + + + + L L S+ + + +LP + L+ ++L L E
Sbjct: 243 LKELMVSGNRLTSLPMLPSGLLSL---SVYRNQLTRLPESLIHLSSETTVNLEGN-PLSE 298
Query: 341 IRPNVISNLTRLEELYMGNSFTQWKVEGQSNASLGELKQLSRLTTL 386
+ +T ++ + G S L+ L
Sbjct: 299 RTLQALREITSAPGY--SGPIIRFDMAGASAPRETRALHLAAADWL 342
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622 | Back alignment and structure |
|---|
Score = 58.8 bits (142), Expect = 5e-09
Identities = 37/171 (21%), Positives = 61/171 (35%), Gaps = 28/171 (16%)
Query: 220 RGIYELPERLGFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPSSLGCL 279
G+ LP+ L L + +N +P ELR L+++G + SLP L
Sbjct: 50 SGLTTLPDCLPAHITTLVIP--DNNLTSLP----ALPPELRTLEVSGNQLTSLPVLPPGL 103
Query: 280 INLRTLSLENCLVVDVAIIGDLKKLEILSLKHSSIEQLPREIGQLTCLKLLDLSNCSKLK 339
+ L S + L L + + + LP L L +S+ +L
Sbjct: 104 LELSIFSNPLT-----HLPALPSGLCKLWIFGNQLTSLPVLPPGLQE---LSVSDN-QLA 154
Query: 340 EIRPNVISNLTRLEELYMGNSFTQWKVEGQSNASLGELKQLS----RLTTL 386
+ P + S L +L N T L++LS +L +L
Sbjct: 155 SL-PALPSELCKLWAY--NNQLT------SLPMLPSGLQELSVSDNQLASL 196
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622 | Back alignment and structure |
|---|
Score = 54.5 bits (131), Expect = 1e-07
Identities = 40/188 (21%), Positives = 63/188 (33%), Gaps = 47/188 (25%)
Query: 222 IYELPERLGFLK-LKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPSSLGCLI 280
+ LP L L +F +L + L L + G + SLP
Sbjct: 93 LTSLPVLPPGLLELSIFSNPLTHLPALP--------SGLCKLWIFGNQLTSLPVLPP--- 141
Query: 281 NLRTLSLENCLVVDV-AIIGDLKKLEI-----------------LSLKHSSIEQLPREIG 322
L+ LS+ + + + A+ +L KL LS+ + + LP
Sbjct: 142 GLQELSVSDNQLASLPALPSELCKLWAYNNQLTSLPMLPSGLQELSVSDNQLASLPTLPS 201
Query: 323 QLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGNSFTQWKVEGQSNASLGELKQLS- 381
+L L + +L + P + S L L N T ELK+L
Sbjct: 202 ELYKLWAYNN----RLTSL-PALPSGLKELIVSG--NRLTSL------PVLPSELKELMV 248
Query: 382 ---RLTTL 386
RLT+L
Sbjct: 249 SGNRLTSL 256
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622 | Back alignment and structure |
|---|
Score = 53.0 bits (127), Expect = 3e-07
Identities = 18/97 (18%), Positives = 35/97 (36%), Gaps = 9/97 (9%)
Query: 257 TELRVLDLTGFRFHSLPSSLGCLINLRTLSLENCLVVDVAIIGDLKKLEILSLKHSSIEQ 316
VL++ +LP L ++ TL + + + + +L L + + +
Sbjct: 40 NGNAVLNVGESGLTTLPDCLP--AHITTLVIPDNNLTS--LPALPPELRTLEVSGNQLTS 95
Query: 317 LPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLE 353
LP L L + + L P + S L +L
Sbjct: 96 LPVLPPGLLELSIFSNPL-THL----PALPSGLCKLW 127
|
| >2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276 | Back alignment and structure |
|---|
Score = 58.4 bits (142), Expect = 2e-09
Identities = 31/115 (26%), Positives = 52/115 (45%), Gaps = 6/115 (5%)
Query: 248 IPDPFFEGMTELRVLDLTGFRFHSLPSSL-GCLINLRTLSLENCLVVDVA--IIGDLKKL 304
I D ++ ++ L L LTG SL L +L+ L + + IG LK L
Sbjct: 67 IEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTL 126
Query: 305 EILSLKHSSIEQLPRE--IGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYM 357
+ L++ H+ I+ LT L+ LDLS+ K++ I + L ++ L +
Sbjct: 127 KELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSN-KIQSIYCTDLRVLHQMPLLNL 180
|
| >2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276 | Back alignment and structure |
|---|
Score = 54.2 bits (131), Expect = 5e-08
Identities = 33/129 (25%), Positives = 53/129 (41%), Gaps = 10/129 (7%)
Query: 241 TENLSLQ------IPDPFFEGMTELRVLDLTGFRFHSLPSSL-GCLINLRTLSLENCLV- 292
T+NL L + F EL+VLDL+ ++ L +L TL L +
Sbjct: 30 TKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ 89
Query: 293 -VDVAIIGDLKKLEILSLKHSSIEQLPREI-GQLTCLKLLDLSNCSKLKEIRPNVISNLT 350
+ + L L+ L +++ L G L LK L++++ P SNLT
Sbjct: 90 SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLT 149
Query: 351 RLEELYMGN 359
LE L + +
Sbjct: 150 NLEHLDLSS 158
|
| >2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276 | Back alignment and structure |
|---|
Score = 52.7 bits (127), Expect = 2e-07
Identities = 30/139 (21%), Positives = 52/139 (37%), Gaps = 11/139 (7%)
Query: 257 TELRVLDLTGFRFHSLPS-SLGCLINLRTLSLENCL--VVDVAIIGDLKKLEILSLKHSS 313
+ LDL+ L S S L+ L L C ++ L L L L +
Sbjct: 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP 87
Query: 314 IEQLPREI-GQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMG-NSFTQWKVEGQSN 371
I+ L L+ L+ L L + I +L L+EL + N +K+
Sbjct: 88 IQSLALGAFSGLSSLQKLVAVET-NLASLENFPIGHLKTLKELNVAHNLIQSFKLPE-YF 145
Query: 372 ASLGELKQLS----RLTTL 386
++L L+ L ++ ++
Sbjct: 146 SNLTNLEHLDLSSNKIQSI 164
|
| >2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276 | Back alignment and structure |
|---|
Score = 45.0 bits (107), Expect = 5e-05
Identities = 22/130 (16%), Positives = 46/130 (35%), Gaps = 9/130 (6%)
Query: 238 LFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPSS--LGCLINLRTLSLENCL--VV 293
L E + + + L+ L++ S L NL L L + +
Sbjct: 105 LVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI 164
Query: 294 DVAIIGDLKKLEI----LSLKHSSIEQLPREIGQLTCLKLLDLSNCSKLKEIRPNVISNL 349
+ L ++ + L L + + + + LK L L +LK + + L
Sbjct: 165 YCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTN-QLKSVPDGIFDRL 223
Query: 350 TRLEELYMGN 359
T L+++++
Sbjct: 224 TSLQKIWLHT 233
|
| >1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313 | Back alignment and structure |
|---|
Score = 57.9 bits (141), Expect = 4e-09
Identities = 36/136 (26%), Positives = 55/136 (40%), Gaps = 14/136 (10%)
Query: 255 GMTELRVLDLTGFRFH---SLPSSLGCLINLRTLSL--ENCLVVDV-AIIGDLKKLEILS 308
+ LDL+G +PSSL L L L + N LV + I L +L L
Sbjct: 48 QTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLY 107
Query: 309 LKHSSIE-QLPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYM-GNSFTQWKV 366
+ H+++ +P + Q+ L LD S + + P IS+L L + GN +
Sbjct: 108 ITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTL-PPSISSLPNLVGITFDGNRIS---- 162
Query: 367 EGQSNASLGELKQLSR 382
G S G +L
Sbjct: 163 -GAIPDSYGSFSKLFT 177
|
| >1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313 | Back alignment and structure |
|---|
Score = 48.3 bits (116), Expect = 4e-06
Identities = 31/116 (26%), Positives = 50/116 (43%), Gaps = 7/116 (6%)
Query: 224 ELPERLGFL-KLKLFLFFTEN-LSLQIPDPFFEGMTELRVLDLTGFRFH-SLPSSLGCLI 280
+P+ G KL + + N L+ +IP F L +DL+ G
Sbjct: 164 AIPDSYGSFSKLFTSMTISRNRLTGKIPPTF--ANLNLAFVDLSRNMLEGDASVLFGSDK 221
Query: 281 NLRTLSLE-NCLVVDVAIIGDLKKLEILSLKHSSIE-QLPREIGQLTCLKLLDLSN 334
N + + L N L D+ +G K L L L+++ I LP+ + QL L L++S
Sbjct: 222 NTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSF 277
|
| >1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313 | Back alignment and structure |
|---|
Score = 47.1 bits (113), Expect = 1e-05
Identities = 20/91 (21%), Positives = 35/91 (38%), Gaps = 11/91 (12%)
Query: 298 IGDLKKLEILSLKHSSIE---QLPREIGQLTCLKLLDLSNCSKLK-EIRPNVISNLTRLE 353
++ L L ++ +P + L L L + + L I P I+ LT+L
Sbjct: 46 DTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPI-PPAIAKLTQLH 104
Query: 354 ELYM-GNSFTQWKVEGQSNASLGELKQLSRL 383
LY+ + + G L ++K L L
Sbjct: 105 YLYITHTNVS-----GAIPDFLSQIKTLVTL 130
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520 | Back alignment and structure |
|---|
Score = 57.6 bits (139), Expect = 1e-08
Identities = 76/494 (15%), Positives = 161/494 (32%), Gaps = 86/494 (17%)
Query: 241 TENLSL------QIPDPFFEGMTELRVLDLTGFRFHSLPSS-LGCLINLRTLSLENCLVV 293
T L++ ++ +++LR+L ++ R L S L L L + +V
Sbjct: 23 TTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLV 82
Query: 294 DVAIIGDLKKLEILSLKHSSIEQLPR--EIGQLTCLKLLDLSNCSKLKEIRPNVISNLTR 351
++ L+ L L ++ + LP E G ++ LK L LS L++ I++L
Sbjct: 83 KIS-CHPTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTT-HLEKSSVLPIAHLNI 140
Query: 352 LEELYMGNSFTQWKVEGQSNASLGELKQLSRLTTLEVHIPDAQVMPQDLVFVELERFRIC 411
+ L + ++ + + L T +HI V P + F + +
Sbjct: 141 SKVLLVLG---------ETYGEKEDPEGLQDFNTESLHI----VFPTNKEFHFILDVSVK 187
Query: 412 IGDVWSWSDGYETSKTLKLQLNNSTYLGYGMKMLLKRTEDLHLDELAGFKNVVHELDDEE 471
S L+ + + +L L+ + N +
Sbjct: 188 TVANLELS---NIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLV 244
Query: 472 GFARLRHLHVHNGPEILHILNSDGRVGTFPLLESLFLHNLINL------EKVCDGKVRLN 525
+ + + N + L+ + L++L +H +++ + + +N
Sbjct: 245 WHTTVWYFSISNVK-LQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMN 303
Query: 526 EDDKSFSNLRIIKVEGCHRVKHLFPFSLVKNLLQLQKVKVTDCTNLKLIVGKESENSAHK 585
+ + S R++ H+ S + L L D +N L
Sbjct: 304 IKNFTVSGTRMV---------HMLCPSKISPFLHL------DFSNNLLT----------- 337
Query: 586 NGSISGVYFRKLHFL--------KLQHLPQLTSSGFDLETPTNTQGSNPGIIAEGDPKDF 637
L L +L+ L ++ +++ S + + D
Sbjct: 338 --DTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDC 395
Query: 638 TSLFNERVVFPSLKKLKLSSINVEKIWLNSFSAIESWGKNLTKLTVEKCGRLKFLFSSSM 697
+ SL L +SS N + F + + L + ++K +
Sbjct: 396 SWT-------KSLLSLNMSS-N--ILTDTIFRCLPP---RIKVLDLHSN-KIKSI--PKQ 439
Query: 698 VNGLEQLQQLDISH 711
V LE LQ+L+++
Sbjct: 440 VVKLEALQELNVAS 453
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520 | Back alignment and structure |
|---|
Score = 54.1 bits (130), Expect = 1e-07
Identities = 20/117 (17%), Positives = 55/117 (47%), Gaps = 3/117 (2%)
Query: 245 SLQIPDPFFEGMTELRVLDLTG--FRFHSLPSSLGCLINLRTLSLENCLVVDVAIIGDLK 302
L M L+ LD++ + +L +L++ + ++ D
Sbjct: 362 ELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLPP 421
Query: 303 KLEILSLKHSSIEQLPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGN 359
++++L L + I+ +P+++ +L L+ L++++ +LK + + LT L+++++
Sbjct: 422 RIKVLDLHSNKIKSIPKQVVKLEALQELNVASN-QLKSVPDGIFDRLTSLQKIWLHT 477
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520 | Back alignment and structure |
|---|
Score = 53.3 bits (128), Expect = 2e-07
Identities = 37/291 (12%), Positives = 90/291 (30%), Gaps = 13/291 (4%)
Query: 75 NQLSNSNPRKIQGMDADLSSIELSYEFLKCKEVKSLFQLCGLLKDGSRIAVDDLLRYVMG 134
L S+ I ++ + L + + ++ + L + +++
Sbjct: 125 THLEKSSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDF-NTESLHIVFPTNKEFHFILD 183
Query: 135 LRLLTNADTLEAARNRVHTLIDNLKSASLLFDGDSEDHAKMHRIIHAIAVSIAAEKLLFN 194
+ + T A+ + V S+L + + + + ++L
Sbjct: 184 VSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQL 243
Query: 195 IQNVADLKEELDKIDEAPTAISIPFRGIYELPERLGFLKLKLFLFFTENLSLQIPDPFFE 254
+ + + + F + L ++ +F +E
Sbjct: 244 VWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGF------PQSYIYE 297
Query: 255 GMTELRVLDLTGFRFHSLPS-SLGCLINLRTLSLENCLVVDVA--IIGDLKKLEILSLKH 311
+ + + + T + + L N L+ D G L +LE L L+
Sbjct: 298 IFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQM 357
Query: 312 SSIEQLPREIG---QLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGN 359
+ +++L + Q+ L+ LD+S S + + S L L M +
Sbjct: 358 NQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSS 408
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520 | Back alignment and structure |
|---|
Score = 45.6 bits (108), Expect = 5e-05
Identities = 61/414 (14%), Positives = 125/414 (30%), Gaps = 55/414 (13%)
Query: 304 LEILSLKHSSIEQLPRE-IGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGNSFT 362
IL++ + I +L I L+ L++L +S+ +++ + +V LE L +
Sbjct: 23 TTILNISQNYISELWTSDILSLSKLRILIISHN-RIQYLDISVFKFNQELEYLDL----- 76
Query: 363 QWKVEGQSNASLGEL--KQLSRLTTLEVHIPDAQVMPQDLVFVELERFRICIGDVWSWSD 420
S+ L ++ L L++ +P F + + +
Sbjct: 77 -------SHNKLVKISCHPTVNLKHLDLSFNAFDALPICKEFGNMSQLK----------- 118
Query: 421 GYETSKTLKLQLNNSTYLGYGMKMLLKRTEDLHLDELAGFKNVVHELDDEEGFARLRHLH 480
L L + L L E +D EG
Sbjct: 119 ------FLGLSTTHLEKSSVLPIAHLN-----ISKVLLVLGETYGEKEDPEGLQDFNTES 167
Query: 481 VHNGPEILHILNSDGRVGTFPLLESLFLHNLINLEKVCDGKVRLNEDDKSFSNLRIIKVE 540
+H + V + + +L L N+ + + L+ K +N ++ +
Sbjct: 168 LHIVFPTNKEFHFILDV-SVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLT 226
Query: 541 GCHRVKHLFPFSLVKNLLQLQKVKVTDCTNLKLIVGKESENSAHKNGSISGVYFRKLHFL 600
+ F + L+ V +N+KL + + + S+ + ++
Sbjct: 227 LNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSD 286
Query: 601 KLQHLPQLTSSGFDLETPTNTQGSNPGIIAEGDPKDFTSLFNERVVFPSLKKLKLSSINV 660
F N S ++ P + L S+ +
Sbjct: 287 VFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPF----------LHLDFSNNLL 336
Query: 661 EKIWLNSFSAIESWGKNLTKLTVEKCGRLKFLFS-SSMVNGLEQLQQLDISHCK 713
+ + L L ++ +LK L + M ++ LQQLDIS
Sbjct: 337 TDTVFENCGHL----TELETLILQMN-QLKELSKIAEMTTQMKSLQQLDISQNS 385
|
| >3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455 | Back alignment and structure |
|---|
Score = 57.4 bits (139), Expect = 1e-08
Identities = 30/116 (25%), Positives = 53/116 (45%), Gaps = 5/116 (4%)
Query: 248 IPDPFFEGMTELRVLDLTGFRFHSLPS-SLGCLINLRTLSL-ENCL-VVDVAIIGDLKKL 304
+ F T+L L L + + + L +L L+L +N L +D + +L KL
Sbjct: 290 LLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKL 349
Query: 305 EILSLKHSSIEQLPREI-GQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGN 359
E+L L ++ I L + L LK L L +LK + + LT L+++++
Sbjct: 350 EVLDLSYNHIRALGDQSFLGLPNLKELALDTN-QLKSVPDGIFDRLTSLQKIWLHT 404
|
| >3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455 | Back alignment and structure |
|---|
Score = 51.3 bits (123), Expect = 9e-07
Identities = 33/157 (21%), Positives = 63/157 (40%), Gaps = 11/157 (7%)
Query: 243 NLSLQIPDPFFEGMTELRVLDLTGFRFHSLPSS-LGCLINLRTLSLENCLVVDVAIIGD- 300
L I + F G++ L +L L +F L + L NL L+L C + + G+
Sbjct: 65 TPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNF 124
Query: 301 ---LKKLEILSLKHSSIEQLPREI--GQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEEL 355
L LE+L L+ ++I+++ + +LDL+ +K+K I + N
Sbjct: 125 FKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTF-NKVKSICEEDLLNFQGKHFT 183
Query: 356 YM---GNSFTQWKVEGQSNASLGELKQLSRLTTLEVH 389
+ + G + + +TTL++
Sbjct: 184 LLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLS 220
|
| >3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455 | Back alignment and structure |
|---|
Score = 49.0 bits (117), Expect = 4e-06
Identities = 26/135 (19%), Positives = 50/135 (37%), Gaps = 19/135 (14%)
Query: 243 NLSLQIPDPFFEGMTELRVLDLTGFRFHSLPSSLGCLI---------------NLRTLSL 287
+ FF+ + ++ L +++ SS G ++T L
Sbjct: 223 GFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDL 282
Query: 288 E-NCL-VVDVAIIGDLKKLEILSLKHSSIEQLPREI-GQLTCLKLLDLSNCSKLKEIRPN 344
+ + + ++ LE L+L + I ++ LT L L+LS + L I
Sbjct: 283 SKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQ-NFLGSIDSR 341
Query: 345 VISNLTRLEELYMGN 359
+ NL +LE L +
Sbjct: 342 MFENLDKLEVLDLSY 356
|
| >3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455 | Back alignment and structure |
|---|
Score = 48.6 bits (116), Expect = 7e-06
Identities = 24/127 (18%), Positives = 41/127 (32%), Gaps = 28/127 (22%)
Query: 241 TENLSLQ------IPDPFFEGMTELRVLDLTGFRFHSLPSSLGCLINLRTLSLENCLVVD 294
+ L + + F + +L+ L + L + N
Sbjct: 32 VNYVDLSLNSIAELNETSFSRLQDLQFLKVEQ--------------QTPGLVIRN----- 72
Query: 295 VAIIGDLKKLEILSLKHSSIEQLPREI-GQLTCLKLLDLSNCS-KLKEIRPNVISNLTRL 352
L L IL L ++ QL L L++L L+ C+ + N LT L
Sbjct: 73 -NTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSL 131
Query: 353 EELYMGN 359
E L + +
Sbjct: 132 EMLVLRD 138
|
| >1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176 | Back alignment and structure |
|---|
Score = 53.9 bits (130), Expect = 2e-08
Identities = 27/132 (20%), Positives = 54/132 (40%), Gaps = 8/132 (6%)
Query: 238 LFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPSSLGCLINLRTLSLENCLVVDVAI 297
+ T L Q + R LDL G++ + + L + + + +
Sbjct: 2 VKLTAELIEQAAQ--YTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDG 59
Query: 298 IGDLKKLEILSLKHSSIEQLPREIGQ-LTCLKLLDLSNC--SKLKEIRPNVISNLTRLEE 354
L++L+ L + ++ I ++ + Q L L L L+N +L ++ P +++L L
Sbjct: 60 FPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDP--LASLKSLTY 117
Query: 355 LY-MGNSFTQWK 365
L + N T K
Sbjct: 118 LCILRNPVTNKK 129
|
| >1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198 | Back alignment and structure |
|---|
Score = 53.5 bits (129), Expect = 3e-08
Identities = 28/130 (21%), Positives = 51/130 (39%), Gaps = 11/130 (8%)
Query: 258 ELRVLDLTGFRFHSLPSSLGCLINLRTLSLENCLVVDVAIIGDLKKLEILSLKHSSIEQL 317
E L + ++L L + L+L + ++ + ++ L ILSL + I+++
Sbjct: 26 EKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKISSLSGMENLRILSLGRNLIKKI 85
Query: 318 PREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMG-NSFTQWKVEGQSNASLGE 376
L+ L +S ++ + I L L LYM N T W + +
Sbjct: 86 ENLDAVADTLEELWISYN-QIASLSG--IEKLVNLRVLYMSNNKITNWG-------EIDK 135
Query: 377 LKQLSRLTTL 386
L L +L L
Sbjct: 136 LAALDKLEDL 145
|
| >1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198 | Back alignment and structure |
|---|
Score = 44.3 bits (105), Expect = 4e-05
Identities = 23/113 (20%), Positives = 42/113 (37%), Gaps = 11/113 (9%)
Query: 254 EGMTELRVLDLTGFRFHSLPSSLGCLINLRTLSLENCLVVDVAIIGDLKKLEILSLKHSS 313
GM LR+L L + + L L + + ++ I L L +L + ++
Sbjct: 67 SGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLSGIEKLVNLRVLYMSNNK 126
Query: 314 IEQLP--REIGQLTCLKLLDLSN---------CSKLKEIRPNVISNLTRLEEL 355
I ++ L L+ L L+ + E R V+ L L++L
Sbjct: 127 ITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKL 179
|
| >2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168 | Back alignment and structure |
|---|
Score = 52.8 bits (127), Expect = 4e-08
Identities = 29/130 (22%), Positives = 49/130 (37%), Gaps = 7/130 (5%)
Query: 240 FTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPSSLGCLINLRTLSLENCLVVDVAIIG 299
+ L++ + + EL VLD + +NL LSL N ++ V+ +
Sbjct: 10 MKRRIHLELRNRTPAAVREL-VLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISVSNLP 68
Query: 300 DLKKLEILSLKHSSIEQLPREIGQ-LTCLKLLDLSNC--SKLKEIRPNVISNLTRLEELY 356
L KL+ L L + I + + L L L+LS + + P + L L+ L
Sbjct: 69 KLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEP--LKKLECLKSLD 126
Query: 357 -MGNSFTQWK 365
T
Sbjct: 127 LFNCEVTNLN 136
|
| >4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350 | Back alignment and structure |
|---|
Score = 54.8 bits (132), Expect = 5e-08
Identities = 22/117 (18%), Positives = 47/117 (40%), Gaps = 5/117 (4%)
Query: 248 IPDPFFEGMTELRVLDLTGFRFHSLPSSLGC-LINLRTLSL-ENCLVVDV---AIIGDLK 302
I F+ + L+ L ++ LP + L + +N + + + +G
Sbjct: 95 INPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSF 154
Query: 303 KLEILSLKHSSIEQLPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGN 359
+ IL L + I+++ T L L+LS+ + L+E+ +V + L +
Sbjct: 155 ESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISR 211
|
| >4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350 | Back alignment and structure |
|---|
Score = 51.8 bits (124), Expect = 5e-07
Identities = 22/132 (16%), Positives = 44/132 (33%), Gaps = 13/132 (9%)
Query: 241 TENLSLQ------IPDPFFEGMTELRVLDLTGFRFHSL--PSSLGCLINLRTLSLENC-- 290
L I F G +L ++++ + L L + +E
Sbjct: 32 AIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANN 91
Query: 291 -LVVDVAIIGDLKKLEILSLKHSSIEQLPREIGQ-LTCLKLLDLSNCSKLKEIRPNVISN 348
L ++ +L L+ L + ++ I+ LP LLD+ + + I N
Sbjct: 92 LLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVG 151
Query: 349 LT-RLEELYMGN 359
L+ L++
Sbjct: 152 LSFESVILWLNK 163
|
| >1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263 | Back alignment and structure |
|---|
Score = 53.1 bits (128), Expect = 1e-07
Identities = 22/86 (25%), Positives = 41/86 (47%), Gaps = 4/86 (4%)
Query: 274 SSLGCLINLRTLSLENCLVVDVAIIGDLKKLEILSLKHSSIEQLPREIGQLTCLKLLDLS 333
L N +L V D+ +L ++ + +S+I+ L + T LK L LS
Sbjct: 13 FPDPGLANAVKQNLGKQSVTDLVSQKELSGVQNFNGDNSNIQSLA-GMQFFTNLKELHLS 71
Query: 334 NCSKLKEIRPNVISNLTRLEELYMGN 359
+ ++ ++ P + +LT+LEEL +
Sbjct: 72 HN-QISDLSP--LKDLTKLEELSVNR 94
|
| >1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263 | Back alignment and structure |
|---|
Score = 48.1 bits (115), Expect = 5e-06
Identities = 27/118 (22%), Positives = 44/118 (37%), Gaps = 6/118 (5%)
Query: 242 ENLSL---QIPDPFFEGMTELRVLDLTGFRFHSLPSSLGCLINLRTLSLENCLVVDVAII 298
E LS+ ++ + L L L SL L NL LS+ N + + ++
Sbjct: 88 EELSVNRNRLKNLNGIPSACLSRLFLDNNELRDT-DSLIHLKNLEILSIRNNKLKSIVML 146
Query: 299 GDLKKLEILSLKHSSIEQLPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELY 356
G L KLE+L L + I + +L + +DL+ K L +
Sbjct: 147 GFLSKLEVLDLHGNEITNTG-GLTRLKKVNWIDLTGQ-KCVNEPVKYQPELYITNTVK 202
|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361 | Back alignment and structure |
|---|
Score = 53.7 bits (129), Expect = 1e-07
Identities = 38/144 (26%), Positives = 58/144 (40%), Gaps = 10/144 (6%)
Query: 222 IYELPERLGFLKLKL--FLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPS-SLGC 278
+ L +L L + N I F + LR LDL+ H+L
Sbjct: 51 LSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSD 110
Query: 279 LINLRTLSLENCLVVDVA--IIGDLKKLEILSLKHSSIEQLPREI----GQLTCLKLLDL 332
L L L L N +V V D+ +L+ L L + I + P E+ +L L LLDL
Sbjct: 111 LQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDL 170
Query: 333 SNCSKLKEIRPNVISNLTRLEELY 356
S+ +KLK++ + L +
Sbjct: 171 SS-NKLKKLPLTDLQKLPAWVKNG 193
|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361 | Back alignment and structure |
|---|
Score = 49.1 bits (117), Expect = 4e-06
Identities = 18/60 (30%), Positives = 28/60 (46%), Gaps = 2/60 (3%)
Query: 301 LKKLEILSLKHSSIEQLPREI-GQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGN 359
L L L L H+ + + E + L+ LDLS+ L + + S+L LE L + N
Sbjct: 63 LTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSN-HLHTLDEFLFSDLQALEVLLLYN 121
|
| >2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239 | Back alignment and structure |
|---|
Score = 51.5 bits (124), Expect = 3e-07
Identities = 23/134 (17%), Positives = 49/134 (36%), Gaps = 9/134 (6%)
Query: 238 LFFTENLSLQIPDPFFEGMTELRVLDLTG-FRFHSLPS-SLGCLINLRTLSLENC---LV 292
L E IP F + + + ++ L S S L + + + N
Sbjct: 36 LKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTY 95
Query: 293 VDVAIIGDLKKLEILSLKHSSIEQLP--REIGQLTCLKLLDLSNCSKLKEIRPNVISNLT 350
+D + +L L+ L + ++ ++ P ++ +L++++ + I N L
Sbjct: 96 IDPDALKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLC 155
Query: 351 R-LEELYM-GNSFT 362
L + N FT
Sbjct: 156 NETLTLKLYNNGFT 169
|
| >2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239 | Back alignment and structure |
|---|
Score = 46.9 bits (112), Expect = 8e-06
Identities = 18/107 (16%), Positives = 40/107 (37%), Gaps = 7/107 (6%)
Query: 257 TELRVLDLTGFRFHSLPSSLGCLINLRTLSLENCL--VVDVAIIGDLKKLEILSLKHS-S 313
+ +T +PS + +TL L + +L + + + +
Sbjct: 11 HQEEDFRVTCKDIQRIPSLP---PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVT 67
Query: 314 IEQLPREI-GQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGN 359
++QL L+ + +++ N L I P+ + L L+ L + N
Sbjct: 68 LQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFN 114
|
| >2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239 | Back alignment and structure |
|---|
Score = 45.8 bits (109), Expect = 2e-05
Identities = 17/130 (13%), Positives = 39/130 (30%), Gaps = 8/130 (6%)
Query: 238 LFFTENLSLQ-IPDPFFEGMTELRVLDLTGFRFHSLP--SSLGCLINLRTLSL-ENCLVV 293
+ +L I + + L+ L + P + + L + +N +
Sbjct: 85 IEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMT 144
Query: 294 DV---AIIGDLKKLEILSLKHSSIEQLPREIGQLTCLKLLDLSNCSKLKEIRPNVISNL- 349
+ A G + L L ++ + T L + L+ L I + +
Sbjct: 145 SIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVY 204
Query: 350 TRLEELYMGN 359
+ L +
Sbjct: 205 SGPSLLDVSQ 214
|
| >2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220 | Back alignment and structure |
|---|
Score = 51.2 bits (123), Expect = 3e-07
Identities = 28/137 (20%), Positives = 55/137 (40%), Gaps = 12/137 (8%)
Query: 257 TELRVLDLTGFRFHSLPS-SLGCLINLRTLSLENCLVVDVA--IIGDLKKLEILSLKHSS 313
+ + L +P + LR + L N + ++A L+ L L L +
Sbjct: 32 ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNK 91
Query: 314 IEQLPREI-GQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGNSFTQWKVEGQSNA 372
I +LP+ + L L+LL L+ +K+ +R + +L L L + ++ Q
Sbjct: 92 ITELPKSLFEGLFSLQLLLLNA-NKINCLRVDAFQDLHNLNLLSLYDNKLQ-------TI 143
Query: 373 SLGELKQLSRLTTLEVH 389
+ G L + T+ +
Sbjct: 144 AKGTFSPLRAIQTMHLA 160
|
| >2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220 | Back alignment and structure |
|---|
Score = 51.2 bits (123), Expect = 3e-07
Identities = 31/129 (24%), Positives = 56/129 (43%), Gaps = 11/129 (8%)
Query: 241 TENLSLQ------IPDPFFEGMTELRVLDLTGFRFHSLPS-SLGCLINLRTLSL-ENCL- 291
+ L+ IP F +LR +DL+ + L + L +L +L L N +
Sbjct: 34 ITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKIT 93
Query: 292 VVDVAIIGDLKKLEILSLKHSSIEQLPREIGQ-LTCLKLLDLSNCSKLKEIRPNVISNLT 350
+ ++ L L++L L + I L + Q L L LL L + +KL+ I S L
Sbjct: 94 ELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYD-NKLQTIAKGTFSPLR 152
Query: 351 RLEELYMGN 359
++ +++
Sbjct: 153 AIQTMHLAQ 161
|
| >3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457 | Back alignment and structure |
|---|
Score = 52.4 bits (126), Expect = 4e-07
Identities = 13/107 (12%), Positives = 30/107 (28%), Gaps = 8/107 (7%)
Query: 253 FEGMTELRVLDLTGFRFHSLPSSLGCLINLRTLSLENCLVVDVAIIGDLKKLEILSLKHS 312
L L+ + + L L + + +L L +
Sbjct: 123 VSQNPLLTYLNCARNTLTEID--VSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDCSFN 180
Query: 313 SIEQLPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGN 359
I +L + Q L L+ + ++ ++ +L L +
Sbjct: 181 KITELD--VSQNKLLNRLNCDTN-NITKL---DLNQNIQLTFLDCSS 221
|
| >3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457 | Back alignment and structure |
|---|
Score = 47.0 bits (112), Expect = 2e-05
Identities = 26/119 (21%), Positives = 43/119 (36%), Gaps = 11/119 (9%)
Query: 241 TENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPSSLGCLINLRTLSLENCLVVDVAIIGD 300
T++ + PD F ++ + S L L +L N + D+ I
Sbjct: 8 TQSFNDWFPDDNFASEVAAA-FEMQA----TDTISEEQLATLTSLDCHNSSITDMTGIEK 62
Query: 301 LKKLEILSLKHSSIEQLPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGN 359
L L L ++I L + Q T L L + KL + ++ LT+L L
Sbjct: 63 LTGLTKLICTSNNITTLD--LSQNTNLTYLACDSN-KLTNL---DVTPLTKLTYLNCDT 115
|
| >3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457 | Back alignment and structure |
|---|
Score = 43.5 bits (103), Expect = 2e-04
Identities = 15/88 (17%), Positives = 28/88 (31%), Gaps = 2/88 (2%)
Query: 247 QIPDPFFEGMTELRVLDLTGFRFHSLPSSLGCLINLRTLSLENCLVVDVAIIGDLKKLEI 306
I + +L L L L + L++LS N + D + +G + L
Sbjct: 308 GITELDLSQNPKLVYLYLNNTELTELD--VSHNTKLKSLSCVNAHIQDFSSVGKIPALNN 365
Query: 307 LSLKHSSIEQLPREIGQLTCLKLLDLSN 334
+P+E L + +
Sbjct: 366 NFEAEGQTITMPKETLTNNSLTIAVSPD 393
|
| >3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457 | Back alignment and structure |
|---|
Score = 42.8 bits (101), Expect = 4e-04
Identities = 20/122 (16%), Positives = 43/122 (35%), Gaps = 7/122 (5%)
Query: 229 LGFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPSSLGCLINLRTLSLE 288
L ++ ++ D T+L +LD L L L L L
Sbjct: 271 LTHNTQLIYFQAEGCRKIKELD--VTHNTQLYLLDCQAAGITELD--LSQNPKLVYLYLN 326
Query: 289 NCLVVDVAIIGDLKKLEILSLKHSSIEQLPREIGQLTCLKLLDLSNCSKLKEIRPNVISN 348
N + ++ + KL+ LS ++ I+ +G++ L + + + ++N
Sbjct: 327 NTELTELD-VSHNTKLKSLSCVNAHIQDFS-SVGKIPALNNNFEAE-GQTITMPKETLTN 383
Query: 349 LT 350
+
Sbjct: 384 NS 385
|
| >2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149 | Back alignment and structure |
|---|
Score = 48.5 bits (116), Expect = 8e-07
Identities = 28/128 (21%), Positives = 45/128 (35%), Gaps = 7/128 (5%)
Query: 242 ENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPSSLGCLINLRTLSLENCLVVDVAIIGDL 301
+ L++ + + EL VLD + L L LS N + +A + L
Sbjct: 5 RRIHLELRNRTPSDVKEL-VLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIANLPKL 63
Query: 302 KKLEILSLKHSSIEQLPREIGQ-LTCLKLLDLSNC--SKLKEIRPNVISNLTRLEELY-M 357
KL+ L L + + + + L L+LS L I P + L L+ L
Sbjct: 64 NKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEP--LKKLENLKSLDLF 121
Query: 358 GNSFTQWK 365
T
Sbjct: 122 NCEVTNLN 129
|
| >2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332 | Back alignment and structure |
|---|
Score = 50.4 bits (121), Expect = 1e-06
Identities = 33/184 (17%), Positives = 67/184 (36%), Gaps = 33/184 (17%)
Query: 238 LFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPSSLGCLINLRTLSLENCL--VVDV 295
L N +I + F + +L+ L ++ +P +L +L L + + V
Sbjct: 83 LVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEIPPNL--PSSLVELRIHDNRIRKVPK 140
Query: 296 AIIGDLKKLEILSLKHSSIEQLPREIGQLTCLKL--LDLSNCS----------------- 336
+ L+ + + + + +E E G LKL L +S
Sbjct: 141 GVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPKDLPETLNELHL 200
Query: 337 ---KLKEIRPNVISNLTRLEELYM-GNSFTQWKVEGQSNASLGELKQLS----RLTTLEV 388
K++ I + ++L L + N +E S + L L++L +L+ +
Sbjct: 201 DHNKIQAIELEDLLRYSKLYRLGLGHNQIR--MIENGSLSFLPTLRELHLDNNKLSRVPA 258
Query: 389 HIPD 392
+PD
Sbjct: 259 GLPD 262
|
| >2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332 | Back alignment and structure |
|---|
Score = 46.2 bits (110), Expect = 3e-05
Identities = 18/113 (15%), Positives = 35/113 (30%), Gaps = 16/113 (14%)
Query: 248 IPDPFFEGMTELRVLDLTGFRFHSLPSSLGCLINLRTLSLENCLVVDVAIIGDLKKLEIL 307
I + + LR L L + +P+ L L L+ + L I
Sbjct: 232 IENGSLSFLPTLRELHLDNNKLSRVPAGLPDLKLLQVVYLHTN--------------NIT 277
Query: 308 SLKHSSIEQLPREIGQLTCLKLLDLS-NCSKLKEIRPNVISNLTRLEELYMGN 359
+ + + + + + L N E++P +T + GN
Sbjct: 278 KVGVNDFCPVGFGV-KRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGN 329
|
| >3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251 | Back alignment and structure |
|---|
Score = 49.7 bits (119), Expect = 1e-06
Identities = 38/129 (29%), Positives = 62/129 (48%), Gaps = 11/129 (8%)
Query: 241 TENLSLQ------IPDPFFEGMTELRVLDLTGFRFHSLPSSL-GCLINLRTLSLE-NCL- 291
TE L LQ + D F G+T+L L+L + +L + + L L TL L N L
Sbjct: 37 TEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLA 96
Query: 292 VVDVAIIGDLKKLEILSLKHSSIEQLPREI-GQLTCLKLLDLSNCSKLKEIRPNVISNLT 350
+ + + L +L+ L L + ++ LP + +LT LK L L+ ++L+ I LT
Sbjct: 97 SLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNT-NQLQSIPAGAFDKLT 155
Query: 351 RLEELYMGN 359
L+ L +
Sbjct: 156 NLQTLSLST 164
|
| >3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* Length = 1249 | Back alignment and structure |
|---|
Score = 50.6 bits (121), Expect = 2e-06
Identities = 39/250 (15%), Positives = 79/250 (31%), Gaps = 36/250 (14%)
Query: 15 LSNEEASHLFEKIVGHSAKKSDFETIGVEIVAKCGGLPIAIKTIANALKNKSPRIWKDAV 74
L E+ + V KK D I+ +C G P+ + I L++ R W +
Sbjct: 286 LGREKGLEILSLFVNM--KKEDLPAEAHSIIKECKGSPLVVSLIGALLRDFPNR-WAYYL 342
Query: 75 NQLSNSNPRKIQGMDAD-----LSSIELSYEFLKCKEVKSLFQLCGLLKDGSRIAVDDLL 129
QL N ++I+ + ++ +S E L+ +++K + +L+ ++ L
Sbjct: 343 RQLQNKQFKRIRKSSSYDYEALDEAMSISVEMLR-EDIKDYYTDLSILQKDVKVPTKVLC 401
Query: 130 RYVMGLRLLTNADTLEAARNRVHTLIDNLKSASLLFDGDSEDHAKMHRIIHAIAVSIAAE 189
+ V ++ + SLLF + +H + V E
Sbjct: 402 VL------------WDLETEEVEDILQEFVNKSLLFCNRNGKSF--CYYLHDLQVDFLTE 447
Query: 190 KLLFNIQ-----NVADLKEELDKIDEAPTAISIPFRGIYELPERLG-------FLKLKLF 237
K +Q V + +P + L + L
Sbjct: 448 KNRSQLQDLHRKMVTQFQRYYQPHTLSPDQEDCMYW-YNFLAYHMASANMHKELCALMFS 506
Query: 238 LFFTENLSLQ 247
L + + +
Sbjct: 507 LDWIKAKTEL 516
|
| >3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562 | Back alignment and structure |
|---|
Score = 49.5 bits (118), Expect = 4e-06
Identities = 22/116 (18%), Positives = 54/116 (46%), Gaps = 5/116 (4%)
Query: 248 IPDPFFE--GMTELRVLDLTGFRFHSLPSSLGC--LINLRTLSLENCLVVDVAIIGDLKK 303
M+ L LD++ +S C ++ L+L + ++ K
Sbjct: 392 FFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLPPK 451
Query: 304 LEILSLKHSSIEQLPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGN 359
+++L L ++ I +P+++ L L+ L++++ ++LK + V LT L+ +++ +
Sbjct: 452 VKVLDLHNNRIMSIPKDVTHLQALQELNVAS-NQLKSVPDGVFDRLTSLQYIWLHD 506
|
| >3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562 | Back alignment and structure |
|---|
Score = 48.3 bits (115), Expect = 8e-06
Identities = 61/391 (15%), Positives = 114/391 (29%), Gaps = 52/391 (13%)
Query: 253 FEGMTELRVLDLTGFRFHSLPSSL-GCLINLRTLSL-ENCLVVDVAI-IGDLKKLEILSL 309
++ELRVL L+ R SL + +L L + N L I + L L L
Sbjct: 72 ISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRL---QNISCCPMASLRHLDL 128
Query: 310 KHSSIEQLPR--EIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGNSFTQWKVE 367
+ + LP E G LT L L LS +K +++ + L + + ++
Sbjct: 129 SFNDFDVLPVCKEFGNLTKLTFLGLSA-AKFRQLDLL---PVAHLHLSCILLDLVSYHIK 184
Query: 368 GQSNASLGELK------QLSRLTTLEVHIPDAQVMPQDLVFVELERFRICIGDVWSWSDG 421
G SL + V + + L ++ + ++
Sbjct: 185 GGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSE 244
Query: 422 YET-SKTLKLQLNNSTYLGYGMKMLLKRTEDLHLDELAGFKNVVHELDDEEGFARLRHLH 480
L + L + L + ++ L + + E D E F +
Sbjct: 245 LTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFT-----Y 299
Query: 481 VHNGPEILHILNSDGRVGTFPLLESLFLHNLINLEKVCDGKVRLNEDDKSFSNLRIIKVE 540
+ L I + +V F E + +N S S+ I +
Sbjct: 300 SETALKSLMIEHVKNQVFLFS------------KEALYSVFAEMNIKMLSISDTPFIHMV 347
Query: 541 GCHRVKHLFPFSLVKNLLQLQKVKVTDC-TNLKLIVGKESENSAHKNG--SISGVYFRKL 597
+ +N+ + L+ + +NG + V
Sbjct: 348 CPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTL-------ILQRNGLKNFFKVALMTK 400
Query: 598 HFLKLQHLP----QLTSSGFDLET--PTNTQ 622
+ L+ L L S +D +
Sbjct: 401 NMSSLETLDVSLNSLNSHAYDRTCAWAESIL 431
|
| >3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592 | Back alignment and structure |
|---|
Score = 48.4 bits (115), Expect = 9e-06
Identities = 52/397 (13%), Positives = 112/397 (28%), Gaps = 60/397 (15%)
Query: 215 ISIPFRGIYELPERLGFLK-LKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLP 273
+ ++EL + L+ L ++ +S + + L + + F L
Sbjct: 177 SEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELV 236
Query: 274 SSLGCLINLRTLSLENC-----LVVDVAIIGDLKKLEILSLKHSSIEQLPREIGQLTCLK 328
NL + + + +KL L L + ++P ++
Sbjct: 237 GFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIR 296
Query: 329 LLDLSNCSKLKEIRPNVISNLTRLEELYMGNSFTQWKVEGQSNASLGEL-KQLSRLTTLE 387
LDL E +I LE L N + L L + +L L
Sbjct: 297 KLDLLYALLETEDHCTLIQKCPNLEVLETRNVIG--------DRGLEVLAQYCKQLKRLR 348
Query: 388 VHIPDAQVMPQDLVFVELERFRICIGDVWSWSDGYETSKTLKLQLNNSTYLG-YGMKMLL 446
+ D +E E + + + + G + + + + +++ T + L
Sbjct: 349 IE------RGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYL 402
Query: 447 KRTEDLHLDELAGFKNVVHELDDE------EGFARLRHLHVHNGPE------ILHILNSD 494
K D L L + + D G +LR + + +I
Sbjct: 403 KNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQY- 461
Query: 495 GRVGTFPLLESLFLHN-------LINLEKVCDGKVRLNEDD------------KSFSNLR 535
P + + L L+ + C +L +LR
Sbjct: 462 -----SPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLR 516
Query: 536 IIKVEGCH-RVKHLFPFSLVKNLLQLQKVKVTDCTNL 571
+ V+G + + + ++ + +
Sbjct: 517 YLWVQGYRASMTGQDLMQMARPYWNIELIPSRRVPEV 553
|
| >3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592 | Back alignment and structure |
|---|
Score = 44.2 bits (104), Expect = 2e-04
Identities = 41/269 (15%), Positives = 76/269 (28%), Gaps = 41/269 (15%)
Query: 531 FSNLRIIKVEGCHRVK--HLFPFSLVKNLLQLQKVKVTDCTNLKLIVGKESENSAHKNGS 588
F NLR +K++G R +L P + + + LK + + S
Sbjct: 72 FPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDR 131
Query: 589 ISGVYFRKLHFLKLQHLPQLTSSGF-------------DLETPTNTQGSNPGIIAEGDPK 635
++ L LKL T+ G +E + ++ +
Sbjct: 132 LAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQH- 190
Query: 636 DFTSLFNERVVFPSLKKLKLSSINVEKIWLNSFSAIESWGKNLTKLTVEKCGRLKFLFSS 695
SL+ L KI I ++L + V L+ +
Sbjct: 191 -----------NTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFF 239
Query: 696 SMVNGLEQLQQLDISHCKSMNEVINTRVG-----------RDDNMIEMVF---PKLVSLQ 741
LE+ ++ M E V N + ++F ++ L
Sbjct: 240 KAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLD 299
Query: 742 LSHLPKLTRFGIGDSVEFPSLCQLQIACC 770
L + T + P+L L+
Sbjct: 300 LLYALLETEDHCTLIQKCPNLEVLETRNV 328
|
| >3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592 | Back alignment and structure |
|---|
Score = 42.6 bits (100), Expect = 5e-04
Identities = 72/554 (12%), Positives = 172/554 (31%), Gaps = 94/554 (16%)
Query: 260 RVLDLTGFRFHSLPSSLGCLINLRTLSLENCLVVD-----------------VAIIGDLK 302
+ + + NLR+L L+ I +L+
Sbjct: 53 EHVTMALCYTATPDRLSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLR 112
Query: 303 KLEILSLKHSSI--EQLPREIGQLTC--LKLLDLSNCSKLKEIRP-NVISNLTRLEELYM 357
+L+ + + + L + + L+ L L CS +++++ +++ L M
Sbjct: 113 QLKSVHFRRMIVSDLDL-DRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLM 171
Query: 358 GNSFTQWKVEGQSNASLGELKQLSRLTTLEVHIPDAQVMPQDLVFVELERFRICIGDVWS 417
S + L EL T+LEV L F E +I D+ +
Sbjct: 172 EES----SFSEKDGKWLHEL--AQHNTSLEV-----------LNFYMTEFAKISPKDLET 214
Query: 418 WSDGYETSKTLKLQLNNSTYLGYGMKMLLKRTEDLHLDELAGFKNVVHELDDEEGFARLR 477
+ + ++K+ L G E+ L + + + +L
Sbjct: 215 IARNCRSLVSVKVGDFEILEL-VGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLC 273
Query: 478 HLHVHN-GPEILHILNSDGRVGTFPLLESLFLHNLINLEKVCDGKVRLNEDDKSFSNLRI 536
L + GP + IL + L +L+ + L + NL +
Sbjct: 274 RLGLSYMGPNEMPILFPFA-----AQIRKL---DLLYALLETEDHCTLI---QKCPNLEV 322
Query: 537 IKVEGCHRVKHLFPFSLVKNLLQLQKVKVTDCTNLKLIVGKESENSAHKNGSISGVYFRK 596
++ + L L + QL+++++ + + + +E S +++ ++
Sbjct: 323 LETRNVIGDRGL--EVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALA-QGCQE 379
Query: 597 LHFLKLQHLPQLTSSGFDLETPTNTQGSNPGIIAEGDPKDFTSLFNERVV------FPSL 650
L ++ + ++ +T+ + + ++ + T L + V L
Sbjct: 380 LEYMAV-YVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKL 438
Query: 651 KKLKLSSINVEKIWLNSFSAIESWGKNLTKLTVEKCGR----LKFLFSS----------- 695
++ + S I + N+ + + G L
Sbjct: 439 RRFAFYL-RQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRG 497
Query: 696 ---------SMVNGLEQLQQLDISHCKSMNEVINTRVGRDDNMIEMVFPKLVSLQLSHLP 746
+ V L L+ L + ++ + G+D + + + + +P
Sbjct: 498 CCFSERAIAAAVTKLPSLRYLWVQGYRA------SMTGQDLMQMARPYWNIELIPSRRVP 551
Query: 747 KLTRFGIGDSVEFP 760
++ + G +E P
Sbjct: 552 EVNQQGEIREMEHP 565
|
| >2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220 | Back alignment and structure |
|---|
Score = 45.0 bits (107), Expect = 3e-05
Identities = 26/141 (18%), Positives = 49/141 (34%), Gaps = 25/141 (17%)
Query: 222 IYELPERLGFLKLKL--FLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPSSLGCL 279
L F KL + F+ N I + FEG + + + LT R ++
Sbjct: 44 FTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHK---- 99
Query: 280 INLRTLSLENCLVVDVAIIGDLKKLEILSLKHSSIEQLPREI-GQLTCLKLLDLSNCSKL 338
+ L+ L+ L L+ + I + + L+ ++LL L + ++
Sbjct: 100 -----------------MFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDN-QI 141
Query: 339 KEIRPNVISNLTRLEELYMGN 359
+ P L L L +
Sbjct: 142 TTVAPGAFDTLHSLSTLNLLA 162
|
| >2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594 | Back alignment and structure |
|---|
Score = 46.4 bits (110), Expect = 4e-05
Identities = 78/567 (13%), Positives = 158/567 (27%), Gaps = 117/567 (20%)
Query: 259 LRVLDLTGFRFHSLPSSLGCLINLRTLSLENCLVVD---VAIIGDLKKLEILSLKH---- 311
L G+ + + + L + L+ +V D I K ++L L
Sbjct: 84 LVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGF 143
Query: 312 --SSIEQLPREIGQLTCLKLLDLSNCSKLK---EIRPNVISNLTRLEELYMGNSFTQWKV 366
+ + LK LDL + T L L + ++
Sbjct: 144 STDGLAAIAAT---CRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSF 200
Query: 367 EG-----QSNASLGELKQLSRLTTLEVHIPDAQVMPQDLVFVELERFRICIGDVWSWSDG 421
+L LK L+R LE Q PQ L + + +
Sbjct: 201 SALERLVTRCPNLKSLK-LNRAVPLEKLATLLQRAPQ-LEELGTGGYTAEVRPDVYSGLS 258
Query: 422 YETSKTLKLQ-LNNSTYLGYGMKMLLKRTEDLHLDELAGFKNVVHELDDEEGFARLRHLH 480
S +L+ L+ +L + +RL L+
Sbjct: 259 VALSGCKELRCLSGFWDAV-----------PAYLPAVY------------SVCSRLTTLN 295
Query: 481 VHNGPEILHILNSDGR--VGTFPLLESLFLHNLIN---LEKVCDGKVRLNEDDKSFSNLR 535
+ + + D + P L+ L++ + I LE + L E
Sbjct: 296 LSY----ATVQSYDLVKLLCQCPKLQRLWVLDYIEDAGLEVLASTCKDLRELR--VFPSE 349
Query: 536 IIKVEGCHRVKHLFPFSLVKNLLQLQKVKVTDCTNLKLIVGKESENSAHKNGSISGV--Y 593
+E + S+ +L+ V + C + N ++ +
Sbjct: 350 PFVMEPNVALTEQGLVSVSMGCPKLESV-LYFCRQMT-------------NAALITIARN 395
Query: 594 FRKLHFLKLQHLPQLTSSGFDLETPTNTQGSNPGIIAEGDPKDFTSLFNERVVFPSLKKL 653
+ +L + L + + G A + L++L
Sbjct: 396 RPNMTRFRLCIIEPKAPDYLTL------EPLDIGFGAIVEH------------CKDLRRL 437
Query: 654 KLSSINVEKIWLNSFSAIESWGKNLTKLTVEKCG-RLKFLFSSSMVNGLEQLQQLDISHC 712
LS + F I ++ K + L+V G + +++G + L++L+I C
Sbjct: 438 SLS----GLLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGM--HHVLSGCDSLRKLEIRDC 491
Query: 713 KSMNEVINTRVGRDDNMIEMVFPKLVSLQLSHLPKLTRFGIGDSVEFPSLCQLQIACCPN 772
++ + + + SL +S ++ L Q P
Sbjct: 492 PFGDKALLANASK--------LETMRSLWMSSC-SVSFGACK------LLGQ----KMPK 532
Query: 773 LKIFICSCTEEMSSEKNIHTTQTQPLF 799
L + + S + ++
Sbjct: 533 LNVEVIDERGAPDSRPESCPVERVFIY 559
|
| >2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594 | Back alignment and structure |
|---|
Score = 43.0 bits (101), Expect = 4e-04
Identities = 30/151 (19%), Positives = 50/151 (33%), Gaps = 21/151 (13%)
Query: 252 FFEGMTELRVLDLTGFRF---HSLPSSLGCLINLRTLSLENCLVVDV------AIIGDLK 302
+ +VL L+ L + NL+ L L V DV
Sbjct: 125 IAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYT 184
Query: 303 KLEILSLK-------HSSIEQLPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEEL 355
L L++ S++E+L + LK L L+ L+++ ++ +LEEL
Sbjct: 185 SLVSLNISCLASEVSFSALERLVT---RCPNLKSLKLNRAVPLEKLAT-LLQRAPQLEEL 240
Query: 356 YMGNSFTQWKVEGQSNASLGELKQLSRLTTL 386
G +T + L L L
Sbjct: 241 GTG-GYTAEVRPDVYSGLSVALSGCKELRCL 270
|
| >3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229 | Back alignment and structure |
|---|
Score = 44.7 bits (106), Expect = 5e-05
Identities = 34/133 (25%), Positives = 52/133 (39%), Gaps = 20/133 (15%)
Query: 241 TENLSLQ------IPDPFFEGMTELRVLDLTGFRFHSLPSSL-GCLINLRTLSL-ENCL- 291
+ L L + F+ + L+ L L + +LP + L L L L N L
Sbjct: 42 AQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLT 101
Query: 292 -----VVDVAIIGDLKKLEILSLKHSSIEQLPREIGQLTCLKLLDLSNCSKLKEIRPNVI 346
V D L L+ L + + + +LPR I +LT L L L ++LK I
Sbjct: 102 VLPSAVFD-----RLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQ-NQLKSIPHGAF 155
Query: 347 SNLTRLEELYMGN 359
L+ L Y+
Sbjct: 156 DRLSSLTHAYLFG 168
|
| >3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272 | Back alignment and structure |
|---|
Score = 44.2 bits (105), Expect = 8e-05
Identities = 35/113 (30%), Positives = 59/113 (52%), Gaps = 5/113 (4%)
Query: 251 PFFEGMTELRVLDLTGFRFHSLPSSL-GCLINLRTLSLE-NCL-VVDVAIIGDLKKLEIL 307
+ +T L L LTG + SLP+ + L NL+ L L N L + + L L L
Sbjct: 79 SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYL 138
Query: 308 SLKHSSIEQLPREI-GQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGN 359
+L H+ ++ LP+ + +LT L LDL + ++L+ + V LT+L++L +
Sbjct: 139 NLAHNQLQSLPKGVFDKLTNLTELDL-SYNQLQSLPEGVFDKLTQLKDLRLYQ 190
|
| >1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312 | Back alignment and structure |
|---|
Score = 43.3 bits (102), Expect = 2e-04
Identities = 34/142 (23%), Positives = 52/142 (36%), Gaps = 14/142 (9%)
Query: 224 ELPERLGFLKLKL-FLFFTENLSLQIPDPFFEGMTELRVLDLTGFRF---HSLPSSL--G 277
L E +LK L L + SL L LDL+ L S+L
Sbjct: 139 WLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPL 198
Query: 278 CLINLRTLSLENCL-----VVDVAIIGDLKKLEILSLKHSSIEQLPREIGQ--LTCLKLL 330
L+ L+L N V A+ +L+ L L H+S+ + L L
Sbjct: 199 KFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSL 258
Query: 331 DLSNCSKLKEIRPNVISNLTRL 352
+LS LK++ + + L+ L
Sbjct: 259 NLSFT-GLKQVPKGLPAKLSVL 279
|
| >2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336 | Back alignment and structure |
|---|
Score = 42.6 bits (100), Expect = 3e-04
Identities = 20/106 (18%), Positives = 42/106 (39%), Gaps = 5/106 (4%)
Query: 259 LRVLDLTGFRFHSLPSSLGCLINLRTLSLENCLVVD---VAIIGDLKKLEILSLKHSSI- 314
+ + ++ + L N ++ I+ KL+ LSL+ +
Sbjct: 72 VIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLS 131
Query: 315 EQLPREIGQLTCLKLLDLSNCSKLKEIRPNVI-SNLTRLEELYMGN 359
+ + + + + L L+LS CS E + S+ +RL+EL +
Sbjct: 132 DPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSW 177
|
| >2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193 | Back alignment and structure |
|---|
Score = 41.1 bits (97), Expect = 5e-04
Identities = 15/55 (27%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
Query: 305 EILSLKHSSIEQLPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGN 359
L L + +P+E+ L L+DLSN +++ + SN+T+L L +
Sbjct: 34 TELYLDGNQFTLVPKELSNYKHLTLIDLSN-NRISTLSNQSFSNMTQLLTLILSY 87
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 840 | |||
| 3rgz_A | 768 | Protein brassinosteroid insensitive 1; phytohormon | 100.0 | |
| 3vq2_A | 606 | TLR4, TOLL-like receptor 4; leucine rich repeat MD | 100.0 | |
| 1ziw_A | 680 | TOLL-like receptor 3; innate immunity, immune syst | 100.0 | |
| 3vq2_A | 606 | TLR4, TOLL-like receptor 4; leucine rich repeat MD | 100.0 | |
| 3t6q_A | 606 | CD180 antigen; protein-protein complex, leucine ri | 100.0 | |
| 3rgz_A | 768 | Protein brassinosteroid insensitive 1; phytohormon | 100.0 | |
| 1ziw_A | 680 | TOLL-like receptor 3; innate immunity, immune syst | 100.0 | |
| 3t6q_A | 606 | CD180 antigen; protein-protein complex, leucine ri | 100.0 | |
| 2z63_A | 570 | TOLL-like receptor 4, variable lymphocyte recepto; | 100.0 | |
| 2z81_A | 549 | CD282 antigen, TOLL-like receptor 2, variable lymp | 100.0 | |
| 3j0a_A | 844 | TOLL-like receptor 5; membrane protein, leucine-ri | 99.97 | |
| 2z63_A | 570 | TOLL-like receptor 4, variable lymphocyte recepto; | 99.97 | |
| 2z81_A | 549 | CD282 antigen, TOLL-like receptor 2, variable lymp | 99.97 | |
| 3j0a_A | 844 | TOLL-like receptor 5; membrane protein, leucine-ri | 99.97 | |
| 2z7x_B | 520 | TOLL-like receptor 1, variable lymphocyte recepto; | 99.97 | |
| 4eco_A | 636 | Uncharacterized protein; leucine-rich repeats, pro | 99.97 | |
| 4ecn_A | 876 | Leucine-rich repeat protein; leucine-rich repeats, | 99.96 | |
| 4g8a_A | 635 | TOLL-like receptor 4; leucine rich repeat MD-2 rel | 99.96 | |
| 4eco_A | 636 | Uncharacterized protein; leucine-rich repeats, pro | 99.96 | |
| 4ecn_A | 876 | Leucine-rich repeat protein; leucine-rich repeats, | 99.96 | |
| 2z7x_B | 520 | TOLL-like receptor 1, variable lymphocyte recepto; | 99.95 | |
| 3a79_B | 562 | TLR6, VLRB.59, TOLL-like receptor 6, variable lymp | 99.95 | |
| 4g8a_A | 635 | TOLL-like receptor 4; leucine rich repeat MD-2 rel | 99.95 | |
| 1o6v_A | 466 | Internalin A; bacterial infection, extracellular r | 99.94 | |
| 3a79_B | 562 | TLR6, VLRB.59, TOLL-like receptor 6, variable lymp | 99.94 | |
| 3bz5_A | 457 | Internalin-J, INLJ; leucine rich repeat (LRR), cys | 99.93 | |
| 3v47_A | 455 | TOLL-like receptor 5B and variable lymphocyte REC | 99.93 | |
| 1jl5_A | 454 | Outer protein YOPM; leucine-rich repeat, molecular | 99.93 | |
| 1jl5_A | 454 | Outer protein YOPM; leucine-rich repeat, molecular | 99.93 | |
| 2a5y_B | 549 | CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis | 99.93 | |
| 4fmz_A | 347 | Internalin; leucine rich repeat, structural genomi | 99.92 | |
| 3o6n_A | 390 | APL1; leucine-rich repeat, protein binding; HET: N | 99.92 | |
| 3v47_A | 455 | TOLL-like receptor 5B and variable lymphocyte REC | 99.92 | |
| 1o6v_A | 466 | Internalin A; bacterial infection, extracellular r | 99.92 | |
| 3bz5_A | 457 | Internalin-J, INLJ; leucine rich repeat (LRR), cys | 99.91 | |
| 4fmz_A | 347 | Internalin; leucine rich repeat, structural genomi | 99.91 | |
| 2id5_A | 477 | Lingo-1, leucine rich repeat neuronal 6A; CNS-spec | 99.91 | |
| 3oja_B | 597 | Anopheles plasmodium-responsive leucine-rich REPE | 99.91 | |
| 2id5_A | 477 | Lingo-1, leucine rich repeat neuronal 6A; CNS-spec | 99.91 | |
| 3o6n_A | 390 | APL1; leucine-rich repeat, protein binding; HET: N | 99.91 | |
| 3oja_B | 597 | Anopheles plasmodium-responsive leucine-rich REPE | 99.88 | |
| 2ft3_A | 332 | Biglycan; proteoglycan, dimer interface, structura | 99.88 | |
| 1xku_A | 330 | Decorin; proteoglycan, leucine-rich repeat, struct | 99.87 | |
| 3ogk_B | 592 | Coronatine-insensitive protein 1; leucine rich rep | 99.86 | |
| 1ogq_A | 313 | PGIP-2, polygalacturonase inhibiting protein; inhi | 99.86 | |
| 4fcg_A | 328 | Uncharacterized protein; structural genomics, PSI- | 99.86 | |
| 4fcg_A | 328 | Uncharacterized protein; structural genomics, PSI- | 99.85 | |
| 2ft3_A | 332 | Biglycan; proteoglycan, dimer interface, structura | 99.85 | |
| 1xku_A | 330 | Decorin; proteoglycan, leucine-rich repeat, struct | 99.83 | |
| 2z80_A | 353 | TOLL-like receptor 2, variable lymphocyte recepto; | 99.83 | |
| 3ogk_B | 592 | Coronatine-insensitive protein 1; leucine rich rep | 99.83 | |
| 2z66_A | 306 | Variable lymphocyte receptor B, TOLL-like recepto; | 99.83 | |
| 1ozn_A | 285 | Reticulon 4 receptor; NOGO receptor, MAD, myelinat | 99.82 | |
| 3zyi_A | 452 | Leucine-rich repeat-containing protein 4; cell adh | 99.82 | |
| 3zyj_A | 440 | Leucine-rich repeat-containing protein 4C; cell ad | 99.82 | |
| 2z80_A | 353 | TOLL-like receptor 2, variable lymphocyte recepto; | 99.82 | |
| 2p1m_B | 594 | Transport inhibitor response 1 protein; F-BOX, leu | 99.82 | |
| 1z7x_W | 461 | Ribonuclease inhibitor; leucine-rich repeat, enzym | 99.82 | |
| 1ogq_A | 313 | PGIP-2, polygalacturonase inhibiting protein; inhi | 99.81 | |
| 2p1m_B | 594 | Transport inhibitor response 1 protein; F-BOX, leu | 99.81 | |
| 1ozn_A | 285 | Reticulon 4 receptor; NOGO receptor, MAD, myelinat | 99.8 | |
| 3zyj_A | 440 | Leucine-rich repeat-containing protein 4C; cell ad | 99.79 | |
| 3g06_A | 622 | SSPH2 (leucine-rich repeat protein); E3 ubiquitin | 99.78 | |
| 3zyi_A | 452 | Leucine-rich repeat-containing protein 4; cell adh | 99.78 | |
| 2z66_A | 306 | Variable lymphocyte receptor B, TOLL-like recepto; | 99.78 | |
| 3g06_A | 622 | SSPH2 (leucine-rich repeat protein); E3 ubiquitin | 99.77 | |
| 3sfz_A | 1249 | APAF-1, apoptotic peptidase activating factor 1; a | 99.76 | |
| 2o6q_A | 270 | Variable lymphocyte receptor A; leucine-rich repea | 99.75 | |
| 2o6q_A | 270 | Variable lymphocyte receptor A; leucine-rich repea | 99.75 | |
| 1p9a_G | 290 | Platelet glycoprotein IB alpha chain precursor; pl | 99.74 | |
| 1z7x_W | 461 | Ribonuclease inhibitor; leucine-rich repeat, enzym | 99.74 | |
| 1wwl_A | 312 | Monocyte differentiation antigen CD14; LPS, immune | 99.74 | |
| 3o53_A | 317 | Protein LRIM1, AGAP006348-PA; leucine-rich repeat, | 99.74 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 99.73 | |
| 3o53_A | 317 | Protein LRIM1, AGAP006348-PA; leucine-rich repeat, | 99.73 | |
| 1h6u_A | 308 | Internalin H; cell adhesion, leucine rich repeat, | 99.72 | |
| 2z62_A | 276 | TOLL-like receptor 4, variable lymphocyte recepto; | 99.72 | |
| 2z62_A | 276 | TOLL-like receptor 4, variable lymphocyte recepto; | 99.72 | |
| 1wwl_A | 312 | Monocyte differentiation antigen CD14; LPS, immune | 99.72 | |
| 3rfs_A | 272 | Internalin B, repeat modules, variable lymphocyte | 99.71 | |
| 1p9a_G | 290 | Platelet glycoprotein IB alpha chain precursor; pl | 99.71 | |
| 2xwt_C | 239 | Thyrotropin receptor; signaling protein-immune sys | 99.71 | |
| 3m19_A | 251 | Variable lymphocyte receptor A diversity region; a | 99.7 | |
| 3oja_A | 487 | Leucine-rich immune molecule 1; coiled-coil, helix | 99.7 | |
| 1h6u_A | 308 | Internalin H; cell adhesion, leucine rich repeat, | 99.68 | |
| 2xwt_C | 239 | Thyrotropin receptor; signaling protein-immune sys | 99.67 | |
| 1h6t_A | 291 | Internalin B; cell adhesion, leucine rich repeat, | 99.66 | |
| 3oja_A | 487 | Leucine-rich immune molecule 1; coiled-coil, helix | 99.66 | |
| 3m19_A | 251 | Variable lymphocyte receptor A diversity region; a | 99.66 | |
| 3rfs_A | 272 | Internalin B, repeat modules, variable lymphocyte | 99.62 | |
| 1z6t_A | 591 | APAF-1, apoptotic protease activating factor 1; ca | 99.62 | |
| 4glp_A | 310 | Monocyte differentiation antigen CD14; alpha beta | 99.62 | |
| 4ay9_X | 350 | Follicle-stimulating hormone receptor; hormone-rec | 99.62 | |
| 1h6t_A | 291 | Internalin B; cell adhesion, leucine rich repeat, | 99.61 | |
| 3e6j_A | 229 | Variable lymphocyte receptor diversity region; var | 99.61 | |
| 2v70_A | 220 | SLIT-2, SLIT homolog 2 protein N-product; neurogen | 99.6 | |
| 4ay9_X | 350 | Follicle-stimulating hormone receptor; hormone-rec | 99.6 | |
| 1m9s_A | 605 | Internalin B; cell invasion, GW domains, SH3 domai | 99.59 | |
| 2ast_B | 336 | S-phase kinase-associated protein 2; SCF-substrate | 99.59 | |
| 2o6s_A | 208 | Variable lymphocyte receptor B; leucine-rich repea | 99.59 | |
| 2v9t_B | 220 | SLIT homolog 2 protein N-product; structural prote | 99.58 | |
| 4glp_A | 310 | Monocyte differentiation antigen CD14; alpha beta | 99.58 | |
| 4ezg_A | 197 | Putative uncharacterized protein; internalin-A, le | 99.57 | |
| 1xeu_A | 263 | Internalin C; cellular invasion, leucine-rich repe | 99.57 | |
| 4ezg_A | 197 | Putative uncharacterized protein; internalin-A, le | 99.57 | |
| 2ast_B | 336 | S-phase kinase-associated protein 2; SCF-substrate | 99.56 | |
| 2ca6_A | 386 | RAN GTPase-activating protein 1; GAP, GTPase activ | 99.55 | |
| 1m9s_A | 605 | Internalin B; cell invasion, GW domains, SH3 domai | 99.54 | |
| 2o6s_A | 208 | Variable lymphocyte receptor B; leucine-rich repea | 99.53 | |
| 2xot_A | 361 | Amphoterin-induced protein 1; cell adhesion, neuro | 99.52 | |
| 2v9t_B | 220 | SLIT homolog 2 protein N-product; structural prote | 99.52 | |
| 3cvr_A | 571 | Invasion plasmid antigen; leucine rich repeat and | 99.51 | |
| 1xeu_A | 263 | Internalin C; cellular invasion, leucine-rich repe | 99.51 | |
| 2xot_A | 361 | Amphoterin-induced protein 1; cell adhesion, neuro | 99.51 | |
| 2v70_A | 220 | SLIT-2, SLIT homolog 2 protein N-product; neurogen | 99.5 | |
| 3e6j_A | 229 | Variable lymphocyte receptor diversity region; var | 99.49 | |
| 3goz_A | 362 | Leucine-rich repeat-containing protein; LEGL7, NES | 99.48 | |
| 3cvr_A | 571 | Invasion plasmid antigen; leucine rich repeat and | 99.47 | |
| 2ell_A | 168 | Acidic leucine-rich nuclear phosphoprotein 32 FAM | 99.46 | |
| 3goz_A | 362 | Leucine-rich repeat-containing protein; LEGL7, NES | 99.46 | |
| 2ca6_A | 386 | RAN GTPase-activating protein 1; GAP, GTPase activ | 99.45 | |
| 2ell_A | 168 | Acidic leucine-rich nuclear phosphoprotein 32 FAM | 99.45 | |
| 2je0_A | 149 | Acidic leucine-rich nuclear phosphoprotein 32 FAM | 99.43 | |
| 2wfh_A | 193 | SLIT homolog 2 protein C-product; developmental pr | 99.41 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 99.4 | |
| 2je0_A | 149 | Acidic leucine-rich nuclear phosphoprotein 32 FAM | 99.39 | |
| 1w8a_A | 192 | SLIT protein; signaling protein, secreted protein, | 99.38 | |
| 1w8a_A | 192 | SLIT protein; signaling protein, secreted protein, | 99.37 | |
| 1a9n_A | 176 | U2A', U2A'; complex (nuclear protein/RNA), RNA, sn | 99.36 | |
| 4b8c_D | 727 | Glucose-repressible alcohol dehydrogenase transcr | 99.35 | |
| 2wfh_A | 193 | SLIT homolog 2 protein C-product; developmental pr | 99.32 | |
| 1a9n_A | 176 | U2A', U2A'; complex (nuclear protein/RNA), RNA, sn | 99.32 | |
| 4b8c_D | 727 | Glucose-repressible alcohol dehydrogenase transcr | 99.3 | |
| 2o6r_A | 177 | Variable lymphocyte receptor B; leucine-rich repea | 99.28 | |
| 2o6r_A | 177 | Variable lymphocyte receptor B; leucine-rich repea | 99.27 | |
| 1ds9_A | 198 | Outer arm dynein; leucine-rich repeat, beta-BETA-a | 99.25 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 99.24 | |
| 2r9u_A | 174 | Variable lymphocyte receptor; adaptive immunity, V | 99.2 | |
| 3g39_A | 170 | Variable lymphocyte receptor VLRB.2D; antibody, X- | 99.19 | |
| 1ds9_A | 198 | Outer arm dynein; leucine-rich repeat, beta-BETA-a | 99.13 | |
| 2r9u_A | 174 | Variable lymphocyte receptor; adaptive immunity, V | 99.07 | |
| 3g39_A | 170 | Variable lymphocyte receptor VLRB.2D; antibody, X- | 99.01 | |
| 3sb4_A | 329 | Hypothetical leucine rich repeat protein; LRR, rig | 98.96 | |
| 3sb4_A | 329 | Hypothetical leucine rich repeat protein; LRR, rig | 98.86 | |
| 2ifg_A | 347 | High affinity nerve growth factor receptor; TRK, T | 98.8 | |
| 4fdw_A | 401 | Leucine rich hypothetical protein; putative cell s | 98.7 | |
| 3un9_A | 372 | NLR family member X1; leucine rich repeat (LRR), a | 98.67 | |
| 4fdw_A | 401 | Leucine rich hypothetical protein; putative cell s | 98.66 | |
| 2ifg_A | 347 | High affinity nerve growth factor receptor; TRK, T | 98.65 | |
| 3un9_A | 372 | NLR family member X1; leucine rich repeat (LRR), a | 98.6 | |
| 3e4g_A | 176 | ATP synthase subunit S, mitochondrial; leucine-ric | 98.4 | |
| 4fs7_A | 394 | Uncharacterized protein; leucine-rich repeats, pro | 98.33 | |
| 3e4g_A | 176 | ATP synthase subunit S, mitochondrial; leucine-ric | 98.32 | |
| 4fs7_A | 394 | Uncharacterized protein; leucine-rich repeats, pro | 98.2 | |
| 2ra8_A | 362 | Uncharacterized protein Q64V53_bacfr; WGR domain, | 98.12 | |
| 1io0_A | 185 | Tropomodulin; LRR protein, right-handed super-heli | 97.97 | |
| 3rw6_A | 267 | Nuclear RNA export factor 1; retroviral constituti | 97.78 | |
| 2ra8_A | 362 | Uncharacterized protein Q64V53_bacfr; WGR domain, | 97.78 | |
| 1io0_A | 185 | Tropomodulin; LRR protein, right-handed super-heli | 97.74 | |
| 3rw6_A | 267 | Nuclear RNA export factor 1; retroviral constituti | 97.58 | |
| 4gt6_A | 394 | Cell surface protein; leucine rich repeats, putati | 97.5 | |
| 4gt6_A | 394 | Cell surface protein; leucine rich repeats, putati | 97.26 | |
| 4h09_A | 379 | Hypothetical leucine rich repeat protein; two LRR_ | 96.4 | |
| 4h09_A | 379 | Hypothetical leucine rich repeat protein; two LRR_ | 95.29 | |
| 3rfe_A | 130 | Platelet glycoprotein IB beta chain; platelet surf | 94.81 | |
| 3rfe_A | 130 | Platelet glycoprotein IB beta chain; platelet surf | 94.69 | |
| 1pgv_A | 197 | TMD-1, tropomodulin TMD-1; structural genomics, PS | 94.1 | |
| 1w5s_A | 412 | Origin recognition complex subunit 2 ORC2; replica | 92.25 | |
| 1pgv_A | 197 | TMD-1, tropomodulin TMD-1; structural genomics, PS | 91.94 | |
| 2fna_A | 357 | Conserved hypothetical protein; structural genomic | 89.79 | |
| 1hqc_A | 324 | RUVB; extended AAA-ATPase domain, complex with nuc | 80.51 |
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.4e-36 Score=355.65 Aligned_cols=514 Identities=16% Similarity=0.050 Sum_probs=291.3
Q ss_pred hccCCCcEEEeccCCcc-cCCc--cc-CCCcceeEeeccCccccCCCchhhcCCCCCcEEEcCCCCCCCC-Chh---hcC
Q 003193 207 KIDEAPTAISIPFRGIY-ELPE--RL-GFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSL-PSS---LGC 278 (840)
Q Consensus 207 ~~~~~l~~L~l~~~~~~-~l~~--~~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~l-p~~---l~~ 278 (840)
....++++|++++|.+. .+|. .+ .+++|++|++++|.+.+.+|..++.++++|++|++++|.++.. |.. +.+
T Consensus 97 ~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~ 176 (768)
T 3rgz_A 97 KCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDG 176 (768)
T ss_dssp CCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCEEETHHHHHHTTC
T ss_pred ccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCCccCCcCChhhhhhcc
Confidence 34567888888888774 3454 33 6788888888888777677766667778888888888877644 333 667
Q ss_pred CCCCCEEEccCCccCCcccccCCCCCCEEeecCCCCcccChhhcCCCCCCEEEccCCCCCCccCcccccCCCCCcEEEcc
Q 003193 279 LINLRTLSLENCLVVDVAIIGDLKKLEILSLKHSSIEQLPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMG 358 (840)
Q Consensus 279 l~~L~~L~L~~~~~~~~~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~L~~~~~l~~~p~~~l~~L~~L~~L~l~ 358 (840)
+++|++|++++|.+.....++++++|++|++++|.++..++.++++++|++|++++|.....+|.. ++++++|++|+++
T Consensus 177 l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~-l~~l~~L~~L~Ls 255 (768)
T 3rgz_A 177 CGELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFSRA-ISTCTELKLLNIS 255 (768)
T ss_dssp CTTCCEEECCSSEEESCCBCTTCTTCCEEECCSSCCCSCCCBCTTCCSCCEEECCSSCCCSCHHHH-TTTCSSCCEEECC
T ss_pred CCCCCEEECCCCcccccCCcccCCcCCEEECcCCcCCCCCcccccCCCCCEEECcCCcCCCcccHH-HhcCCCCCEEECC
Confidence 777777777777776644447777777777777777654434777777777777774333344443 6777777777777
Q ss_pred CCcccceecCCCCCCcccccCCCCCCeEEEecCCCC-CCCCcc-c-ccCcceEEEEEcC----ccCCCCCccccceEEEe
Q 003193 359 NSFTQWKVEGQSNASLGELKQLSRLTTLEVHIPDAQ-VMPQDL-V-FVELERFRICIGD----VWSWSDGYETSKTLKLQ 431 (840)
Q Consensus 359 ~~~~~~~~~~~~~~~l~~l~~l~~L~~L~l~~~~~~-~~~~~~-~-~~~L~~L~l~~~~----~~~~~~~~~~l~~L~l~ 431 (840)
+|.+....+ .. .+++|+.|++++|.+. .+|..+ . +++|+.|++..+. .+..+..+++|+.|+++
T Consensus 256 ~n~l~~~~~--------~~-~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~ 326 (768)
T 3rgz_A 256 SNQFVGPIP--------PL-PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALS 326 (768)
T ss_dssp SSCCEESCC--------CC-CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECC
T ss_pred CCcccCccC--------cc-ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECC
Confidence 776543221 11 4555666666655544 344433 1 2555555554332 23334445555555555
Q ss_pred eCCCc-cchhhHHHHHhcccceeeccccccccccccccchhhcc-cccEEEeecCCCeEEEE------------------
Q 003193 432 LNNST-YLGYGMKMLLKRTEDLHLDELAGFKNVVHELDDEEGFA-RLRHLHVHNGPEILHIL------------------ 491 (840)
Q Consensus 432 ~~~~~-~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~~~~l~-~L~~L~l~~~~~l~~~~------------------ 491 (840)
.+... .+|......+++|+.|++++|.....++..+ ..++ +|++|++++|.....++
T Consensus 327 ~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l---~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~ 403 (768)
T 3rgz_A 327 SNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESL---TNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQN 403 (768)
T ss_dssp SSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTH---HHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCS
T ss_pred CCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHH---HhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCC
Confidence 54443 3343322234555555555554433344333 3333 44555544443111110
Q ss_pred -----eCCCccccccccceeecccccccccccccccccCCCCcccCCccEEEEecCCCcccccchhHHhhcccccEEEEe
Q 003193 492 -----NSDGRVGTFPLLESLFLHNLINLEKVCDGKVRLNEDDKSFSNLRIIKVEGCHRVKHLFPFSLVKNLLQLQKVKVT 566 (840)
Q Consensus 492 -----~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~i~ 566 (840)
........+++|++|+++++.--..++ ...+.+++|+.|++++|.-...+| ..+..+++|++|+++
T Consensus 404 n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p-------~~l~~l~~L~~L~L~~n~l~~~~p--~~~~~l~~L~~L~L~ 474 (768)
T 3rgz_A 404 NGFTGKIPPTLSNCSELVSLHLSFNYLSGTIP-------SSLGSLSKLRDLKLWLNMLEGEIP--QELMYVKTLETLILD 474 (768)
T ss_dssp SEEEEECCGGGGGCTTCCEEECCSSEEESCCC-------GGGGGCTTCCEEECCSSCCCSCCC--GGGGGCTTCCEEECC
T ss_pred CccccccCHHHhcCCCCCEEECcCCcccCccc-------HHHhcCCCCCEEECCCCcccCcCC--HHHcCCCCceEEEec
Confidence 011223444555555555532111111 113345556666665554222332 123455666666666
Q ss_pred cccccceeeccccccccccCCccccccccccceeecccCcccccccCCCCCCCccCCCCCcccccCCCCCcccccccccc
Q 003193 567 DCTNLKLIVGKESENSAHKNGSISGVYFRKLHFLKLQHLPQLTSSGFDLETPTNTQGSNPGIIAEGDPKDFTSLFNERVV 646 (840)
Q Consensus 567 ~c~~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~c~~L~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~ 646 (840)
+|.-...++ ..+..+++|++|++.++.-...++.. .....+++.+....+.-....+..+..
T Consensus 475 ~N~l~~~~p-------------~~l~~l~~L~~L~L~~N~l~~~~p~~-----~~~l~~L~~L~L~~N~l~~~~p~~l~~ 536 (768)
T 3rgz_A 475 FNDLTGEIP-------------SGLSNCTNLNWISLSNNRLTGEIPKW-----IGRLENLAILKLSNNSFSGNIPAELGD 536 (768)
T ss_dssp SSCCCSCCC-------------GGGGGCTTCCEEECCSSCCCSCCCGG-----GGGCTTCCEEECCSSCCEEECCGGGGG
T ss_pred CCcccCcCC-------------HHHhcCCCCCEEEccCCccCCcCChH-----HhcCCCCCEEECCCCcccCcCCHHHcC
Confidence 554332222 23456777777777777544343332 234556777777776655566666777
Q ss_pred cCCcceEecccccch-hhcccC----------------------------------------------------------
Q 003193 647 FPSLKKLKLSSINVE-KIWLNS---------------------------------------------------------- 667 (840)
Q Consensus 647 l~~L~~L~l~~c~l~-~~~~~~---------------------------------------------------------- 667 (840)
+++|+.|++++|.++ .+|...
T Consensus 537 l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~ 616 (768)
T 3rgz_A 537 CRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNIT 616 (768)
T ss_dssp CTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTT
T ss_pred CCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccc
Confidence 888888888887554 222110
Q ss_pred -------CccccccCCCceEEEecccCCcc-eeechhhHhhhcccceeeecccccchhhhccCcccccCccccccccccc
Q 003193 668 -------FSAIESWGKNLTKLTVEKCGRLK-FLFSSSMVNGLEQLQQLDISHCKSMNEVINTRVGRDDNMIEMVFPKLVS 739 (840)
Q Consensus 668 -------~~~~~~~l~~L~~L~i~~C~~L~-~l~~~~~~~~l~sL~~L~i~~C~~L~~i~~~~~~~~~~~~~~~l~sL~~ 739 (840)
.+.....+++|+.|+++++ +++ .+| ..++++++|+.|+++++.--..+ |+.+.. +++|+.
T Consensus 617 ~~~~~g~~~~~~~~l~~L~~LdLs~N-~l~g~ip--~~l~~l~~L~~L~Ls~N~l~g~i---p~~l~~------L~~L~~ 684 (768)
T 3rgz_A 617 SRVYGGHTSPTFDNNGSMMFLDMSYN-MLSGYIP--KEIGSMPYLFILNLGHNDISGSI---PDEVGD------LRGLNI 684 (768)
T ss_dssp SCEEEEECCCSCSSSBCCCEEECCSS-CCBSCCC--GGGGGCTTCCEEECCSSCCCSCC---CGGGGG------CTTCCE
T ss_pred cceecccCchhhhccccccEEECcCC-cccccCC--HHHhccccCCEEeCcCCccCCCC---ChHHhC------CCCCCE
Confidence 0111234567788888665 444 443 33777888888888886533344 665554 778888
Q ss_pred cccccCCcceeecCCCCccCCCcceEEeccCCCc
Q 003193 740 LQLSHLPKLTRFGIGDSVEFPSLCQLQIACCPNL 773 (840)
Q Consensus 740 L~i~~c~~L~~l~~~~~~~l~sL~~L~i~~C~~L 773 (840)
|+++++.--..+|. .+.++++|++|++++|+--
T Consensus 685 LdLs~N~l~g~ip~-~l~~l~~L~~L~ls~N~l~ 717 (768)
T 3rgz_A 685 LDLSSNKLDGRIPQ-AMSALTMLTEIDLSNNNLS 717 (768)
T ss_dssp EECCSSCCEECCCG-GGGGCCCCSEEECCSSEEE
T ss_pred EECCCCcccCcCCh-HHhCCCCCCEEECcCCccc
Confidence 88887753334443 3446778888888877533
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-34 Score=334.64 Aligned_cols=510 Identities=18% Similarity=0.167 Sum_probs=358.4
Q ss_pred cCccchhhhhhccCCCcEEEeccCCcccCCc-cc-CCCcceeEeeccCccccCCCchhhcCCCCCcEEEcCCCCCCCC-C
Q 003193 197 NVADLKEELDKIDEAPTAISIPFRGIYELPE-RL-GFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSL-P 273 (840)
Q Consensus 197 ~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~~-~~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~l-p 273 (840)
.+..+..+|...++++++|++++|.+..++. .+ ++++|++|++++|.+.. +++..|.++++|++|++++|.++.+ |
T Consensus 19 ~~~~l~~ip~~~~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~-i~~~~~~~l~~L~~L~Ls~n~l~~~~p 97 (606)
T 3vq2_A 19 MDQKLSKVPDDIPSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIET-IEDKAWHGLHHLSNLILTGNPIQSFSP 97 (606)
T ss_dssp TTSCCSSCCTTSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCE-ECTTTTTTCTTCCEEECTTCCCCCCCT
T ss_pred cCCCcccCCCCCCCCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccc-cCHHHhhchhhcCEeECCCCcccccCh
Confidence 4456777777778899999999999977765 33 78999999999988774 4444458899999999999999877 7
Q ss_pred hhhcCCCCCCEEEccCCccCC--cccccCCCCCCEEeecCCCCc--ccChhhcCCCCCCEEEccCCCCCCccCcccccCC
Q 003193 274 SSLGCLINLRTLSLENCLVVD--VAIIGDLKKLEILSLKHSSIE--QLPREIGQLTCLKLLDLSNCSKLKEIRPNVISNL 349 (840)
Q Consensus 274 ~~l~~l~~L~~L~L~~~~~~~--~~~i~~L~~L~~L~l~~~~l~--~lp~~i~~L~~L~~L~L~~~~~l~~~p~~~l~~L 349 (840)
..|+++++|++|++++|.+.. +..++++++|++|++++|.++ .+|..++++++|++|++++ +.+..+++..++.+
T Consensus 98 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~-n~l~~~~~~~~~~l 176 (606)
T 3vq2_A 98 GSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSY-NYIQTITVNDLQFL 176 (606)
T ss_dssp TSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCS-SCCCEECTTTTHHH
T ss_pred hhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccC-CcceecChhhhhhh
Confidence 889999999999999999887 467999999999999999887 4788899999999999998 56777766556666
Q ss_pred CCCc----EEEccCCcccceecCCCCCCcccccCCCCCCeEEEecCCCC--CCCCcc-cccCcceEEEEEcCccC-----
Q 003193 350 TRLE----ELYMGNSFTQWKVEGQSNASLGELKQLSRLTTLEVHIPDAQ--VMPQDL-VFVELERFRICIGDVWS----- 417 (840)
Q Consensus 350 ~~L~----~L~l~~~~~~~~~~~~~~~~l~~l~~l~~L~~L~l~~~~~~--~~~~~~-~~~~L~~L~l~~~~~~~----- 417 (840)
++|+ +|++++|.+....+ ..+. ..+|+.|++++|... ..+..+ .+++|+.+.+..+....
T Consensus 177 ~~L~~~l~~L~l~~n~l~~~~~-------~~~~-~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~ 248 (606)
T 3vq2_A 177 RENPQVNLSLDMSLNPIDFIQD-------QAFQ-GIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLE 248 (606)
T ss_dssp HHCTTCCCEEECTTCCCCEECT-------TTTT-TCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCS
T ss_pred hccccccceeeccCCCcceeCc-------cccc-CceeeeeeccCCccchhHHHHHhccccccccccccccccccCCccc
Confidence 6655 79999887653222 1222 237889999988654 122222 55666666665443211
Q ss_pred -----CCCCcc--ccceEEEee-CCCccchhhHHHHHhcccceeeccccccccccccccchhhcccccEEEeecCCCeEE
Q 003193 418 -----WSDGYE--TSKTLKLQL-NNSTYLGYGMKMLLKRTEDLHLDELAGFKNVVHELDDEEGFARLRHLHVHNGPEILH 489 (840)
Q Consensus 418 -----~~~~~~--~l~~L~l~~-~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~~~~l~~L~~L~l~~~~~l~~ 489 (840)
...... .++.+.+.. +........ ...+++|+.|++.++.. +.++ .+ ..+++|++|++++|.. ..
T Consensus 249 ~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~-~~l~-~l---~~~~~L~~L~l~~n~l-~~ 321 (606)
T 3vq2_A 249 IFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVK-FHCLANVSAMSLAGVSI-KYLE-DV---PKHFKWQSLSIIRCQL-KQ 321 (606)
T ss_dssp CCCGGGGTTGGGSEEEEEEECCCTTCCGGGGS-CGGGTTCSEEEEESCCC-CCCC-CC---CTTCCCSEEEEESCCC-SS
T ss_pred ccChHHhhhhhhccHhheeccccccccccccc-cccCCCCCEEEecCccc-hhhh-hc---cccccCCEEEcccccC-cc
Confidence 111111 233333322 222221111 23467888898888765 3444 44 6788999999998873 33
Q ss_pred EEeCCCccccccccceeecccccccccccccccccCCCCcccCCccEEEEecCCCccccc-chhHHhhcccccEEEEecc
Q 003193 490 ILNSDGRVGTFPLLESLFLHNLINLEKVCDGKVRLNEDDKSFSNLRIIKVEGCHRVKHLF-PFSLVKNLLQLQKVKVTDC 568 (840)
Q Consensus 490 ~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~-~~~~~~~l~~L~~L~i~~c 568 (840)
++ .. .+++|++|++.++..+..+ + ...+++|+.|+++++ .++... ....+..+++|++|++++|
T Consensus 322 lp----~~-~l~~L~~L~l~~n~~~~~~-----~----~~~l~~L~~L~ls~n-~l~~~~~~~~~~~~~~~L~~L~L~~n 386 (606)
T 3vq2_A 322 FP----TL-DLPFLKSLTLTMNKGSISF-----K----KVALPSLSYLDLSRN-ALSFSGCCSYSDLGTNSLRHLDLSFN 386 (606)
T ss_dssp CC----CC-CCSSCCEEEEESCSSCEEC-----C----CCCCTTCCEEECCSS-CEEEEEECCHHHHCCSCCCEEECCSC
T ss_pred cc----cC-CCCccceeeccCCcCccch-----h----hccCCCCCEEECcCC-ccCCCcchhhhhccCCcccEeECCCC
Confidence 32 23 7888999999887554433 2 457889999999886 344442 1134578899999999987
Q ss_pred cccceeeccccccccccCCccccccccccceeecccCcccccccCCCCCCCccCCCCCcccccCCCCCcccccccccccC
Q 003193 569 TNLKLIVGKESENSAHKNGSISGVYFRKLHFLKLQHLPQLTSSGFDLETPTNTQGSNPGIIAEGDPKDFTSLFNERVVFP 648 (840)
Q Consensus 569 ~~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~c~~L~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~l~ 648 (840)
. +..++. .+..+++|+.|++.++.-....+. .......+++.+....+.-....+..+..++
T Consensus 387 ~-l~~~~~-------------~~~~l~~L~~L~l~~n~l~~~~~~----~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~ 448 (606)
T 3vq2_A 387 G-AIIMSA-------------NFMGLEELQHLDFQHSTLKRVTEF----SAFLSLEKLLYLDISYTNTKIDFDGIFLGLT 448 (606)
T ss_dssp S-EEEECC-------------CCTTCTTCCEEECTTSEEESTTTT----TTTTTCTTCCEEECTTSCCEECCTTTTTTCT
T ss_pred c-cccchh-------------hccCCCCCCeeECCCCccCCccCh----hhhhccccCCEEECcCCCCCccchhhhcCCC
Confidence 6 444431 345788899999988754333221 1233556777777777765555556677899
Q ss_pred CcceEecccccchh-hcccCCccccccCCCceEEEecccCCcceeechhhHhhhcccceeeecccccchhhhccCccccc
Q 003193 649 SLKKLKLSSINVEK-IWLNSFSAIESWGKNLTKLTVEKCGRLKFLFSSSMVNGLEQLQQLDISHCKSMNEVINTRVGRDD 727 (840)
Q Consensus 649 ~L~~L~l~~c~l~~-~~~~~~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~~l~sL~~L~i~~C~~L~~i~~~~~~~~~ 727 (840)
+|++|++++|.++. +.... .+.+++|+.|++++| +++.+++ ..+.++++|++|++++|. +..+. |..+..
T Consensus 449 ~L~~L~l~~n~l~~~~~~~~----~~~l~~L~~L~Ls~n-~l~~~~~-~~~~~l~~L~~L~Ls~N~-l~~~~--~~~~~~ 519 (606)
T 3vq2_A 449 SLNTLKMAGNSFKDNTLSNV----FANTTNLTFLDLSKC-QLEQISW-GVFDTLHRLQLLNMSHNN-LLFLD--SSHYNQ 519 (606)
T ss_dssp TCCEEECTTCEEGGGEECSC----CTTCTTCCEEECTTS-CCCEECT-TTTTTCTTCCEEECCSSC-CSCEE--GGGTTT
T ss_pred CCCEEECCCCcCCCcchHHh----hccCCCCCEEECCCC-cCCccCh-hhhcccccCCEEECCCCc-CCCcC--HHHccC
Confidence 99999999998775 22233 357799999999887 6776644 457889999999999975 44442 555544
Q ss_pred CccccccccccccccccCCcceeecCCCCccCC-CcceEEeccCCCc
Q 003193 728 NMIEMVFPKLVSLQLSHLPKLTRFGIGDSVEFP-SLCQLQIACCPNL 773 (840)
Q Consensus 728 ~~~~~~l~sL~~L~i~~c~~L~~l~~~~~~~l~-sL~~L~i~~C~~L 773 (840)
+++|+.|++++|. ++.+|.. +..++ +|++|++.++|-.
T Consensus 520 ------l~~L~~L~l~~N~-l~~~p~~-~~~l~~~L~~l~l~~N~~~ 558 (606)
T 3vq2_A 520 ------LYSLSTLDCSFNR-IETSKGI-LQHFPKSLAFFNLTNNSVA 558 (606)
T ss_dssp ------CTTCCEEECTTSC-CCCEESC-GGGSCTTCCEEECCSCCCC
T ss_pred ------CCcCCEEECCCCc-CcccCHh-HhhhcccCcEEEccCCCcc
Confidence 8999999999995 8889875 55676 6999999998765
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-34 Score=338.27 Aligned_cols=533 Identities=16% Similarity=0.121 Sum_probs=323.3
Q ss_pred CccchhhhhhccCCCcEEEeccCCcccCCcc-c-CCCcceeEeeccCccccCCCchhhcCCCCCcEEEcCCCCCCCCCh-
Q 003193 198 VADLKEELDKIDEAPTAISIPFRGIYELPER-L-GFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPS- 274 (840)
Q Consensus 198 ~~~~~~~~~~~~~~l~~L~l~~~~~~~l~~~-~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~- 274 (840)
+..+..+|...+.++++|++++|.+..++.. + .+++|++|++++|.+....| ..|.++++|++|++++|.++.+|+
T Consensus 13 ~~~L~~ip~~~~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~l~~~ 91 (680)
T 1ziw_A 13 HLKLTQVPDDLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEP-ELCQKLPMLKVLNLQHNELSQLSDK 91 (680)
T ss_dssp SSCCSSCCSCSCTTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCT-THHHHCTTCCEEECCSSCCCCCCTT
T ss_pred CCCccccccccCCCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCH-HHHhcccCcCEEECCCCccCccChh
Confidence 4456667776778999999999999888764 3 78999999999998875444 456889999999999999999886
Q ss_pred hhcCCCCCCEEEccCCccCC--cccccCCCCCCEEeecCCCCccc-ChhhcCCCCCCEEEccCCCCCCccCccccc--CC
Q 003193 275 SLGCLINLRTLSLENCLVVD--VAIIGDLKKLEILSLKHSSIEQL-PREIGQLTCLKLLDLSNCSKLKEIRPNVIS--NL 349 (840)
Q Consensus 275 ~l~~l~~L~~L~L~~~~~~~--~~~i~~L~~L~~L~l~~~~l~~l-p~~i~~L~~L~~L~L~~~~~l~~~p~~~l~--~L 349 (840)
.|+++++|++|++++|.+.. +..++++++|++|++++|.++.. |..++++++|++|++++ +.+..+++..++ .+
T Consensus 92 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~~~~ 170 (680)
T 1ziw_A 92 TFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSN-NKIQALKSEELDIFAN 170 (680)
T ss_dssp TTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCS-SCCCCBCHHHHGGGTT
T ss_pred hhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccC-CcccccCHHHhhcccc
Confidence 59999999999999999888 46799999999999999988865 45688999999999999 567777765443 56
Q ss_pred CCCcEEEccCCcccceecCCCCCCccccc------------------------CCCCCCeEEEecCCCCCCCCc-c-cc-
Q 003193 350 TRLEELYMGNSFTQWKVEGQSNASLGELK------------------------QLSRLTTLEVHIPDAQVMPQD-L-VF- 402 (840)
Q Consensus 350 ~~L~~L~l~~~~~~~~~~~~~~~~l~~l~------------------------~l~~L~~L~l~~~~~~~~~~~-~-~~- 402 (840)
++|++|++++|.+....+. .+..+. ..++|+.|+++++.+...+.. + .+
T Consensus 171 ~~L~~L~L~~n~l~~~~~~----~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~ 246 (680)
T 1ziw_A 171 SSLKKLELSSNQIKEFSPG----CFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLK 246 (680)
T ss_dssp CEESEEECTTCCCCCBCTT----GGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGG
T ss_pred ccccEEECCCCcccccChh----hhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccC
Confidence 8999999999876533221 111111 125677777777766544332 2 22
Q ss_pred -cCcceEEEEEcCc----cCCCCCccccceEEEeeCCCccchhhHHHHHhcccceeeccccccc-----cccc----ccc
Q 003193 403 -VELERFRICIGDV----WSWSDGYETSKTLKLQLNNSTYLGYGMKMLLKRTEDLHLDELAGFK-----NVVH----ELD 468 (840)
Q Consensus 403 -~~L~~L~l~~~~~----~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~-----~~~~----~l~ 468 (840)
++|+.|++..+.. +.++..+++++.|+++++.....+......+++|+.|++.++.... .++. .+
T Consensus 247 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~- 325 (680)
T 1ziw_A 247 WTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSF- 325 (680)
T ss_dssp GSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTT-
T ss_pred cCCCCEEECCCCCcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhc-
Confidence 3477777765442 2345666777888877766555443323335677777776543211 1111 22
Q ss_pred chhhcccccEEEeecCCCeEEEEeCCCccccccccceeeccccc-ccccccccccc--------------------cCCC
Q 003193 469 DEEGFARLRHLHVHNGPEILHILNSDGRVGTFPLLESLFLHNLI-NLEKVCDGKVR--------------------LNED 527 (840)
Q Consensus 469 ~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~~~-~L~~~~~~~~~--------------------~~~~ 527 (840)
..+++|++|++++|.- ..+. ......+++|++|+++++. .+..++...+. .+..
T Consensus 326 --~~l~~L~~L~l~~n~l-~~~~--~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~ 400 (680)
T 1ziw_A 326 --QWLKCLEHLNMEDNDI-PGIK--SNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDA 400 (680)
T ss_dssp --TTCTTCCEEECCSCCB-CCCC--TTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTT
T ss_pred --ccCCCCCEEECCCCcc-CCCC--hhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhh
Confidence 4567777777776641 1111 1223556667777766542 11111111110 0011
Q ss_pred CcccCCccEEEEecCCCcccccchhHHhhcccccEEEEecccccceeeccccccccccCCccccccccccceeecccCcc
Q 003193 528 DKSFSNLRIIKVEGCHRVKHLFPFSLVKNLLQLQKVKVTDCTNLKLIVGKESENSAHKNGSISGVYFRKLHFLKLQHLPQ 607 (840)
Q Consensus 528 ~~~~~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~c~~ 607 (840)
...+++|+.|+++++.-...+++ ..+..+++|++|++++|. +..+.. ..+..+|+|+.|++.++.-
T Consensus 401 ~~~l~~L~~L~L~~N~l~~~~~~-~~~~~l~~L~~L~Ls~n~-l~~~~~------------~~~~~~~~L~~L~l~~n~l 466 (680)
T 1ziw_A 401 FSWLGHLEVLDLGLNEIGQELTG-QEWRGLENIFEIYLSYNK-YLQLTR------------NSFALVPSLQRLMLRRVAL 466 (680)
T ss_dssp TTTCTTCCEEECCSSCCEEECCS-GGGTTCTTCCEEECCSCS-EEECCT------------TTTTTCTTCCEEECTTSCC
T ss_pred hhCCCCCCEEeCCCCcCccccCc-ccccCcccccEEecCCCC-cceeCh------------hhhhcCcccccchhccccc
Confidence 22344555555554432222221 223445555555555543 111111 1233556666666655431
Q ss_pred --cccccCCCCCCCccCCCCCcccccCCCCCcccccccccccCCcceEecccccchhhcccCCcc----ccccCCCceEE
Q 003193 608 --LTSSGFDLETPTNTQGSNPGIIAEGDPKDFTSLFNERVVFPSLKKLKLSSINVEKIWLNSFSA----IESWGKNLTKL 681 (840)
Q Consensus 608 --L~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~l~~~~~~~~~~----~~~~l~~L~~L 681 (840)
+..++. ......+++.+....+.-.......+..+++|++|++++|.++.++...++. ....+++|+.|
T Consensus 467 ~~~~~~p~-----~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L 541 (680)
T 1ziw_A 467 KNVDSSPS-----PFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHIL 541 (680)
T ss_dssp BCTTCSSC-----TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEE
T ss_pred cccccCCc-----ccccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEE
Confidence 111111 1223445555555444322222233456777888888887777765543321 13566778888
Q ss_pred EecccCCcceeechhhHhhhcccceeeecccccchhhhccCcccccCccccccccccccccccCCcceeecCCCCc-cCC
Q 003193 682 TVEKCGRLKFLFSSSMVNGLEQLQQLDISHCKSMNEVINTRVGRDDNMIEMVFPKLVSLQLSHLPKLTRFGIGDSV-EFP 760 (840)
Q Consensus 682 ~i~~C~~L~~l~~~~~~~~l~sL~~L~i~~C~~L~~i~~~~~~~~~~~~~~~l~sL~~L~i~~c~~L~~l~~~~~~-~l~ 760 (840)
+++++ +++.+|. ..+.++++|+.|++++ +.++.+ |.+.... +++|+.|+++++ +++.++...+. .++
T Consensus 542 ~L~~N-~l~~i~~-~~~~~l~~L~~L~Ls~-N~l~~l---~~~~~~~-----l~~L~~L~L~~N-~l~~~~~~~~~~~~~ 609 (680)
T 1ziw_A 542 NLESN-GFDEIPV-EVFKDLFELKIIDLGL-NNLNTL---PASVFNN-----QVSLKSLNLQKN-LITSVEKKVFGPAFR 609 (680)
T ss_dssp ECCSS-CCCCCCT-TTTTTCTTCCEEECCS-SCCCCC---CTTTTTT-----CTTCCEEECTTS-CCCBCCHHHHHHHHT
T ss_pred ECCCC-CCCCCCH-HHcccccCcceeECCC-CCCCcC---CHhHhCC-----CCCCCEEECCCC-cCCccChhHhccccc
Confidence 88554 5666643 3467777888888876 446655 4433211 677888888777 56666543222 467
Q ss_pred CcceEEeccCCCc
Q 003193 761 SLCQLQIACCPNL 773 (840)
Q Consensus 761 sL~~L~i~~C~~L 773 (840)
+|+.|++.++|-.
T Consensus 610 ~L~~l~l~~N~~~ 622 (680)
T 1ziw_A 610 NLTELDMRFNPFD 622 (680)
T ss_dssp TCSEEECTTCCCC
T ss_pred ccCEEEccCCCcc
Confidence 7888888877654
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-34 Score=334.21 Aligned_cols=476 Identities=18% Similarity=0.149 Sum_probs=288.4
Q ss_pred hccCCCcEEEeccCCcccCCc-cc-CCCcceeEeeccCccccCCCchhhcCCCCCcEEEcCCCCCCCCC-hhhcCCCCCC
Q 003193 207 KIDEAPTAISIPFRGIYELPE-RL-GFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLP-SSLGCLINLR 283 (840)
Q Consensus 207 ~~~~~l~~L~l~~~~~~~l~~-~~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp-~~l~~l~~L~ 283 (840)
....++++|++++|.+..++. .+ .+++|++|++++|.+....|.. |.++++|++|++++|.++.+| ..++++++|+
T Consensus 53 ~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~-~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 131 (606)
T 3vq2_A 53 SNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGS-FSGLTSLENLVAVETKLASLESFPIGQLITLK 131 (606)
T ss_dssp TTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTS-STTCTTCCEEECTTSCCCCSSSSCCTTCTTCC
T ss_pred cCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhh-cCCcccCCEEEccCCccccccccccCCCCCCC
Confidence 467899999999999987754 33 7999999999999987554554 599999999999999999876 7799999999
Q ss_pred EEEccCCccCC---cccccCCCCCCEEeecCCCCcccC-hhhcCCCCCC----EEEccCCCCCCccCcccccCCCCCcEE
Q 003193 284 TLSLENCLVVD---VAIIGDLKKLEILSLKHSSIEQLP-REIGQLTCLK----LLDLSNCSKLKEIRPNVISNLTRLEEL 355 (840)
Q Consensus 284 ~L~L~~~~~~~---~~~i~~L~~L~~L~l~~~~l~~lp-~~i~~L~~L~----~L~L~~~~~l~~~p~~~l~~L~~L~~L 355 (840)
+|++++|.+.. |..++++++|++|++++|.++.++ ..++.+++|+ +|++++ +.+..+++..+. ..+|++|
T Consensus 132 ~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~~-n~l~~~~~~~~~-~~~L~~L 209 (606)
T 3vq2_A 132 KLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSL-NPIDFIQDQAFQ-GIKLHEL 209 (606)
T ss_dssp EEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEECTT-CCCCEECTTTTT-TCEEEEE
T ss_pred EEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhccccccceeeccC-CCcceeCccccc-Cceeeee
Confidence 99999999874 788999999999999999999774 4566666655 899999 678888887544 4499999
Q ss_pred EccCCcccceecCCCCCCcccccCCCCCCeEEEecCCCCCCCC-----ccccc-----CcceEEEEEcC-----ccCCCC
Q 003193 356 YMGNSFTQWKVEGQSNASLGELKQLSRLTTLEVHIPDAQVMPQ-----DLVFV-----ELERFRICIGD-----VWSWSD 420 (840)
Q Consensus 356 ~l~~~~~~~~~~~~~~~~l~~l~~l~~L~~L~l~~~~~~~~~~-----~~~~~-----~L~~L~l~~~~-----~~~~~~ 420 (840)
++++|.+... .....+.++++|+.+++..+....... ...+. .++.+.+.... .+. +.
T Consensus 210 ~L~~n~~~~~------~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~-~~ 282 (606)
T 3vq2_A 210 TLRGNFNSSN------IMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVK-FH 282 (606)
T ss_dssp EEESCCSCHH------HHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGS-CG
T ss_pred eccCCccchh------HHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHhheeccccccccccccc-cc
Confidence 9999865421 112445666667666665433221100 00111 12222221110 111 33
Q ss_pred CccccceEEEeeCCCccchhhHHHHHhcccceeeccccccccccccccchhhcccccEEEeecCCCeEEEEeCCCccccc
Q 003193 421 GYETSKTLKLQLNNSTYLGYGMKMLLKRTEDLHLDELAGFKNVVHELDDEEGFARLRHLHVHNGPEILHILNSDGRVGTF 500 (840)
Q Consensus 421 ~~~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~ 500 (840)
.+.+++.+++.++....+| ++.. +++|+.|++++|.. +.++ .+ .+++|++|++++|.....+ ....+
T Consensus 283 ~l~~L~~L~l~~~~~~~l~-~l~~-~~~L~~L~l~~n~l-~~lp-~~----~l~~L~~L~l~~n~~~~~~-----~~~~l 349 (606)
T 3vq2_A 283 CLANVSAMSLAGVSIKYLE-DVPK-HFKWQSLSIIRCQL-KQFP-TL----DLPFLKSLTLTMNKGSISF-----KKVAL 349 (606)
T ss_dssp GGTTCSEEEEESCCCCCCC-CCCT-TCCCSEEEEESCCC-SSCC-CC----CCSSCCEEEEESCSSCEEC-----CCCCC
T ss_pred cCCCCCEEEecCccchhhh-hccc-cccCCEEEcccccC-cccc-cC----CCCccceeeccCCcCccch-----hhccC
Confidence 3445555555554444443 2211 34555555555543 3333 11 3455555555555433221 22345
Q ss_pred cccceeecccccccccccccccccCCCCcccCCccEEEEecCCCcccccchhHHhhcccccEEEEecccccceeeccccc
Q 003193 501 PLLESLFLHNLINLEKVCDGKVRLNEDDKSFSNLRIIKVEGCHRVKHLFPFSLVKNLLQLQKVKVTDCTNLKLIVGKESE 580 (840)
Q Consensus 501 ~~L~~L~l~~~~~L~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~ 580 (840)
++|++|+++++ .+....... .....+++|+.|++++|. ++.++ ..+..+++|++|++++|.-....+.
T Consensus 350 ~~L~~L~ls~n-~l~~~~~~~----~~~~~~~~L~~L~L~~n~-l~~~~--~~~~~l~~L~~L~l~~n~l~~~~~~---- 417 (606)
T 3vq2_A 350 PSLSYLDLSRN-ALSFSGCCS----YSDLGTNSLRHLDLSFNG-AIIMS--ANFMGLEELQHLDFQHSTLKRVTEF---- 417 (606)
T ss_dssp TTCCEEECCSS-CEEEEEECC----HHHHCCSCCCEEECCSCS-EEEEC--CCCTTCTTCCEEECTTSEEESTTTT----
T ss_pred CCCCEEECcCC-ccCCCcchh----hhhccCCcccEeECCCCc-cccch--hhccCCCCCCeeECCCCccCCccCh----
Confidence 55555555543 222211000 002334555555555543 33332 2234455555555555432211110
Q ss_pred cccccCCccccccccccceeecccCcccccccCCCCCCCccCCCCCcccccCCCCCcc-cccccccccCCcceEeccccc
Q 003193 581 NSAHKNGSISGVYFRKLHFLKLQHLPQLTSSGFDLETPTNTQGSNPGIIAEGDPKDFT-SLFNERVVFPSLKKLKLSSIN 659 (840)
Q Consensus 581 ~~~~~~~~~~l~~l~~L~~L~l~~c~~L~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~-~~~~~~~~l~~L~~L~l~~c~ 659 (840)
..+..+++|++|++++|.-....+.. .....+++.+....+.-.. ..+..+..+++|++|++++|.
T Consensus 418 --------~~~~~l~~L~~L~l~~n~l~~~~~~~-----~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~ 484 (606)
T 3vq2_A 418 --------SAFLSLEKLLYLDISYTNTKIDFDGI-----FLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQ 484 (606)
T ss_dssp --------TTTTTCTTCCEEECTTSCCEECCTTT-----TTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSC
T ss_pred --------hhhhccccCCEEECcCCCCCccchhh-----hcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCc
Confidence 02224455555555554322211111 1223344444444433222 123445678999999999998
Q ss_pred chhhcccCCccccccCCCceEEEecccCCcceeechhhHhhhcccceeeecccccchhhhccCcccccCccccccc-ccc
Q 003193 660 VEKIWLNSFSAIESWGKNLTKLTVEKCGRLKFLFSSSMVNGLEQLQQLDISHCKSMNEVINTRVGRDDNMIEMVFP-KLV 738 (840)
Q Consensus 660 l~~~~~~~~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~~l~sL~~L~i~~C~~L~~i~~~~~~~~~~~~~~~l~-sL~ 738 (840)
++.++...+ ..+++|++|++++| +++.+.+ ..+.++++|++|++++|. ++.+ |.++.. ++ +|+
T Consensus 485 l~~~~~~~~----~~l~~L~~L~Ls~N-~l~~~~~-~~~~~l~~L~~L~l~~N~-l~~~---p~~~~~------l~~~L~ 548 (606)
T 3vq2_A 485 LEQISWGVF----DTLHRLQLLNMSHN-NLLFLDS-SHYNQLYSLSTLDCSFNR-IETS---KGILQH------FPKSLA 548 (606)
T ss_dssp CCEECTTTT----TTCTTCCEEECCSS-CCSCEEG-GGTTTCTTCCEEECTTSC-CCCE---ESCGGG------SCTTCC
T ss_pred CCccChhhh----cccccCCEEECCCC-cCCCcCH-HHccCCCcCCEEECCCCc-Cccc---CHhHhh------hcccCc
Confidence 887765544 57799999999888 5676644 457889999999999975 7766 665544 66 699
Q ss_pred ccccccCC
Q 003193 739 SLQLSHLP 746 (840)
Q Consensus 739 ~L~i~~c~ 746 (840)
.|+++++|
T Consensus 549 ~l~l~~N~ 556 (606)
T 3vq2_A 549 FFNLTNNS 556 (606)
T ss_dssp EEECCSCC
T ss_pred EEEccCCC
Confidence 99999987
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=9.6e-34 Score=329.05 Aligned_cols=525 Identities=14% Similarity=0.107 Sum_probs=331.8
Q ss_pred cCccchhhhhhccCCCcEEEeccCCcccCCc-cc-CCCcceeEeeccCccccCCCchhhcCCCCCcEEEcCCCCCCCC-C
Q 003193 197 NVADLKEELDKIDEAPTAISIPFRGIYELPE-RL-GFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSL-P 273 (840)
Q Consensus 197 ~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~~-~~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~l-p 273 (840)
.+..+..+|...+..+++|++++|.+..++. .+ .+++|++|++++|.+....|.. |.++++|++|++++|.++.+ |
T Consensus 20 ~~~~l~~iP~~l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~-~~~l~~L~~L~Ls~n~l~~~~~ 98 (606)
T 3t6q_A 20 ENLGLNEIPGTLPNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDT-FQSQHRLDTLVLTANPLIFMAE 98 (606)
T ss_dssp TTSCCSSCCTTSCTTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTT-TTTCTTCCEEECTTCCCSEECT
T ss_pred CCCCcccCcCCCCCcCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhh-ccCccccCeeeCCCCcccccCh
Confidence 3445667777778889999999998877743 33 7889999999988877544444 58899999999999988765 7
Q ss_pred hhhcCCCCCCEEEccCCccCC--cccccCCCCCCEEeecCCCCcccC-hhhcCCCCCCEEEccCCCCCCccCcccccCCC
Q 003193 274 SSLGCLINLRTLSLENCLVVD--VAIIGDLKKLEILSLKHSSIEQLP-REIGQLTCLKLLDLSNCSKLKEIRPNVISNLT 350 (840)
Q Consensus 274 ~~l~~l~~L~~L~L~~~~~~~--~~~i~~L~~L~~L~l~~~~l~~lp-~~i~~L~~L~~L~L~~~~~l~~~p~~~l~~L~ 350 (840)
..++++++|++|++++|.+.. +..++++++|++|++++|.++.++ ..+..+++|++|++++ +.+..+++..++.++
T Consensus 99 ~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~ 177 (606)
T 3t6q_A 99 TALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQN-NAIHYLSKEDMSSLQ 177 (606)
T ss_dssp TTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCS-SCCCEECHHHHHTTT
T ss_pred hhhcccccccEeeccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEccc-CcccccChhhhhhhc
Confidence 788899999999999998888 577889999999999999888763 3344588999999988 577777766688888
Q ss_pred CCc--EEEccCCcccceecCCCCCCcccccCCCCCCeEEEecCCCCCCCCcc-cccCcceEEEEEcCccC---------C
Q 003193 351 RLE--ELYMGNSFTQWKVEGQSNASLGELKQLSRLTTLEVHIPDAQVMPQDL-VFVELERFRICIGDVWS---------W 418 (840)
Q Consensus 351 ~L~--~L~l~~~~~~~~~~~~~~~~l~~l~~l~~L~~L~l~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~---------~ 418 (840)
+|+ +|++++|.+....+ .. -...+|+.|+++++.. .+... .+.++....+..+.... .
T Consensus 178 ~L~~l~L~l~~n~l~~~~~-------~~-~~~~~L~~L~l~~~~~--~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~ 247 (606)
T 3t6q_A 178 QATNLSLNLNGNDIAGIEP-------GA-FDSAVFQSLNFGGTQN--LLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAV 247 (606)
T ss_dssp TCCSEEEECTTCCCCEECT-------TT-TTTCEEEEEECTTCSC--HHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGG
T ss_pred ccceeEEecCCCccCccCh-------hH-hhhccccccccCCchh--HHHHhhhccccchhheechhhccccccccChhH
Confidence 888 88888887654332 11 2234677787776541 11110 12222222221111000 0
Q ss_pred CCCc--cccceEEEeeCCCccchhhHHHHHhcccceeeccccccccccccccchhhcccccEEEeecCCCeEEEEeCCCc
Q 003193 419 SDGY--ETSKTLKLQLNNSTYLGYGMKMLLKRTEDLHLDELAGFKNVVHELDDEEGFARLRHLHVHNGPEILHILNSDGR 496 (840)
Q Consensus 419 ~~~~--~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~~~~l~~L~~L~l~~~~~l~~~~~~~~~ 496 (840)
+... ..++.++++.+.....+......+++|+.|+++++.. +.+|..+ ..+++|++|++++|.-. .+. ...
T Consensus 248 ~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l-~~lp~~l---~~l~~L~~L~l~~n~l~-~~~--~~~ 320 (606)
T 3t6q_A 248 FEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHL-SELPSGL---VGLSTLKKLVLSANKFE-NLC--QIS 320 (606)
T ss_dssp GGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCC-SCCCSSC---CSCTTCCEEECTTCCCS-BGG--GGC
T ss_pred hchhhcCceeEEEeecCccCccCHHHhccccCCCEEeccCCcc-CCCChhh---cccccCCEEECccCCcC-cCc--hhh
Confidence 1111 1456666666655555544333456777777777643 3455555 55677777777776521 110 123
Q ss_pred cccccccceeecccccccccccccccccCCCCcccCCccEEEEecCCCcccccc-hhHHhhcccccEEEEecccccceee
Q 003193 497 VGTFPLLESLFLHNLINLEKVCDGKVRLNEDDKSFSNLRIIKVEGCHRVKHLFP-FSLVKNLLQLQKVKVTDCTNLKLIV 575 (840)
Q Consensus 497 ~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~-~~~~~~l~~L~~L~i~~c~~l~~~~ 575 (840)
...+++|++|++.++.....++.+. ...+++|++|+++++. ++.... ...+..+++|++|++++|.- ..+.
T Consensus 321 ~~~l~~L~~L~l~~n~~~~~~~~~~------~~~l~~L~~L~l~~n~-l~~~~~~~~~~~~l~~L~~L~l~~n~l-~~~~ 392 (606)
T 3t6q_A 321 ASNFPSLTHLSIKGNTKRLELGTGC------LENLENLRELDLSHDD-IETSDCCNLQLRNLSHLQSLNLSYNEP-LSLK 392 (606)
T ss_dssp GGGCTTCSEEECCSCSSCCBCCSST------TTTCTTCCEEECCSSC-CCEEEESTTTTTTCTTCCEEECCSCSC-EEEC
T ss_pred hhccCcCCEEECCCCCcccccchhh------hhccCcCCEEECCCCc-cccccCcchhcccCCCCCEEECCCCcC-CcCC
Confidence 3566777777777654322332211 3456777777777653 333320 12345667777777776643 2221
Q ss_pred ccccccccccCCccccccccccceeecccCcccccccCCCCCCCccCCCCCcccccCCCCCcccccccccccCCcceEec
Q 003193 576 GKESENSAHKNGSISGVYFRKLHFLKLQHLPQLTSSGFDLETPTNTQGSNPGIIAEGDPKDFTSLFNERVVFPSLKKLKL 655 (840)
Q Consensus 576 ~~~~~~~~~~~~~~~l~~l~~L~~L~l~~c~~L~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~l~~L~~L~l 655 (840)
. ..+..+++|++|++.++.--...+.. ......+++.+....+.-....+..+..+++|++|++
T Consensus 393 ~------------~~~~~l~~L~~L~l~~n~l~~~~~~~----~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L 456 (606)
T 3t6q_A 393 T------------EAFKECPQLELLDLAFTRLKVKDAQS----PFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNL 456 (606)
T ss_dssp T------------TTTTTCTTCSEEECTTCCEECCTTCC----TTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEEC
T ss_pred H------------HHhcCCccCCeEECCCCcCCCcccch----hhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEEC
Confidence 1 13335677777777766432221111 1223455666666555443334445567899999999
Q ss_pred ccccchhhcccCCccccccCCCceEEEecccCCcceeechhhHhhhcccceeeecccccchhhhccCcccccCccccccc
Q 003193 656 SSINVEKIWLNSFSAIESWGKNLTKLTVEKCGRLKFLFSSSMVNGLEQLQQLDISHCKSMNEVINTRVGRDDNMIEMVFP 735 (840)
Q Consensus 656 ~~c~l~~~~~~~~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~~l~sL~~L~i~~C~~L~~i~~~~~~~~~~~~~~~l~ 735 (840)
++|.++...... ......+++|+.|++++| +++.+++ ..+..+++|++|++++|. +..+. |+.+.. ++
T Consensus 457 ~~n~l~~~~~~~-~~~~~~l~~L~~L~Ls~n-~l~~~~~-~~~~~l~~L~~L~Ls~N~-l~~~~--~~~l~~------l~ 524 (606)
T 3t6q_A 457 QGNHFPKGNIQK-TNSLQTLGRLEILVLSFC-DLSSIDQ-HAFTSLKMMNHVDLSHNR-LTSSS--IEALSH------LK 524 (606)
T ss_dssp TTCBCGGGEECS-SCGGGGCTTCCEEECTTS-CCCEECT-TTTTTCTTCCEEECCSSC-CCGGG--GGGGTT------CC
T ss_pred CCCCCCcccccc-chhhccCCCccEEECCCC-ccCccCh-hhhccccCCCEEECCCCc-cCcCC--hhHhCc------cc
Confidence 999776532111 111357799999999887 5777644 447889999999999975 44442 555544 78
Q ss_pred cccccccccCCcceeecCCCCccCCCcceEEeccCCCcceeeccccc
Q 003193 736 KLVSLQLSHLPKLTRFGIGDSVEFPSLCQLQIACCPNLKIFICSCTE 782 (840)
Q Consensus 736 sL~~L~i~~c~~L~~l~~~~~~~l~sL~~L~i~~C~~L~~l~~~~~~ 782 (840)
+| .|+++++. ++.++...+..+++|+.|++.++|-- |+|+.
T Consensus 525 ~L-~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N~~~----c~c~~ 565 (606)
T 3t6q_A 525 GI-YLNLASNH-ISIILPSLLPILSQQRTINLRQNPLD----CTCSN 565 (606)
T ss_dssp SC-EEECCSSC-CCCCCGGGHHHHHTSSEEECTTCCEE----CSGGG
T ss_pred cc-EEECcCCc-ccccCHhhcccCCCCCEEeCCCCCcc----ccCCc
Confidence 88 89999984 66666544457899999999999843 56654
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-34 Score=340.75 Aligned_cols=527 Identities=16% Similarity=0.099 Sum_probs=335.8
Q ss_pred cCCCcEEEeccCCcccCCcccCCCcceeEeeccCccccCCCchhhcCCCCCcEEEcCCCCCC-CCChhhcCCCCCCEEEc
Q 003193 209 DEAPTAISIPFRGIYELPERLGFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFH-SLPSSLGCLINLRTLSL 287 (840)
Q Consensus 209 ~~~l~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~-~lp~~l~~l~~L~~L~L 287 (840)
..++++|++++|.+........+++|++|++++|.+.+.+|. +.++++|++|++++|.++ .+|..++++++|++|++
T Consensus 177 l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~--l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L 254 (768)
T 3rgz_A 177 CGELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGIPF--LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNI 254 (768)
T ss_dssp CTTCCEEECCSSEEESCCBCTTCTTCCEEECCSSCCCSCCCB--CTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEEC
T ss_pred CCCCCEEECCCCcccccCCcccCCcCCEEECcCCcCCCCCcc--cccCCCCCEEECcCCcCCCcccHHHhcCCCCCEEEC
Confidence 455666666666654433334667777777777776655554 467777777777777776 45666777777777777
Q ss_pred cCCccCC-cccccCCCCCCEEeecCCCCc-ccChhhcCC-CCCCEEEccCCCCCCccCcccccCCCCCcEEEccCCcccc
Q 003193 288 ENCLVVD-VAIIGDLKKLEILSLKHSSIE-QLPREIGQL-TCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGNSFTQW 364 (840)
Q Consensus 288 ~~~~~~~-~~~i~~L~~L~~L~l~~~~l~-~lp~~i~~L-~~L~~L~L~~~~~l~~~p~~~l~~L~~L~~L~l~~~~~~~ 364 (840)
++|.+.. .+.. .+++|++|++++|.++ .+|..+..+ ++|++|++++|.....+|.. ++++++|++|++++|.+..
T Consensus 255 s~n~l~~~~~~~-~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~-~~~l~~L~~L~L~~n~l~~ 332 (768)
T 3rgz_A 255 SSNQFVGPIPPL-PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPF-FGSCSLLESLALSSNNFSG 332 (768)
T ss_dssp CSSCCEESCCCC-CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGG-GGGCTTCCEEECCSSEEEE
T ss_pred CCCcccCccCcc-ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchH-HhcCCCccEEECCCCcccC
Confidence 7777655 2222 6777777777777766 677776664 77888888774333344444 7778888888887776543
Q ss_pred eecCCCCCCcccccCCCCCCeEEEecCCCC-CCCCcc-ccc-CcceEEEEEcC----ccCCCCC--ccccceEEEeeCCC
Q 003193 365 KVEGQSNASLGELKQLSRLTTLEVHIPDAQ-VMPQDL-VFV-ELERFRICIGD----VWSWSDG--YETSKTLKLQLNNS 435 (840)
Q Consensus 365 ~~~~~~~~~l~~l~~l~~L~~L~l~~~~~~-~~~~~~-~~~-~L~~L~l~~~~----~~~~~~~--~~~l~~L~l~~~~~ 435 (840)
.++ ...+.++++|+.|+++.|.+. .+|..+ .+. +|+.|++..+. .+.+... .++++.|+++.+..
T Consensus 333 ~ip------~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l 406 (768)
T 3rgz_A 333 ELP------MDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGF 406 (768)
T ss_dssp ECC------HHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEE
T ss_pred cCC------HHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCcc
Confidence 222 123677888888888887765 555554 444 78888876543 2333333 66788888888766
Q ss_pred c-cchhhHHHHHhcccceeeccccccccccccccchhhcccccEEEeecCCCeEEEEeCCCccccccccceeeccccccc
Q 003193 436 T-YLGYGMKMLLKRTEDLHLDELAGFKNVVHELDDEEGFARLRHLHVHNGPEILHILNSDGRVGTFPLLESLFLHNLINL 514 (840)
Q Consensus 436 ~-~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~~~~L 514 (840)
. ..|.++.. +++|+.|++++|......+..+ +.+++|+.|++++|.....+ ......+++|++|+++++.--
T Consensus 407 ~~~~p~~l~~-l~~L~~L~Ls~N~l~~~~p~~l---~~l~~L~~L~L~~n~l~~~~---p~~~~~l~~L~~L~L~~N~l~ 479 (768)
T 3rgz_A 407 TGKIPPTLSN-CSELVSLHLSFNYLSGTIPSSL---GSLSKLRDLKLWLNMLEGEI---PQELMYVKTLETLILDFNDLT 479 (768)
T ss_dssp EEECCGGGGG-CTTCCEEECCSSEEESCCCGGG---GGCTTCCEEECCSSCCCSCC---CGGGGGCTTCCEEECCSSCCC
T ss_pred ccccCHHHhc-CCCCCEEECcCCcccCcccHHH---hcCCCCCEEECCCCcccCcC---CHHHcCCCCceEEEecCCccc
Confidence 5 44554443 6788999998887666667666 77889999999888632222 223467888999999886432
Q ss_pred ccccccccccCCCCcccCCccEEEEecCCCcccccchhHHhhcccccEEEEecccccceeeccccccccccCCccccccc
Q 003193 515 EKVCDGKVRLNEDDKSFSNLRIIKVEGCHRVKHLFPFSLVKNLLQLQKVKVTDCTNLKLIVGKESENSAHKNGSISGVYF 594 (840)
Q Consensus 515 ~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~l~~l 594 (840)
..++ .....+++|+.|++++|.-...+| ..+..+++|++|++++|.-...++. .+..+
T Consensus 480 ~~~p-------~~l~~l~~L~~L~L~~N~l~~~~p--~~~~~l~~L~~L~L~~N~l~~~~p~-------------~l~~l 537 (768)
T 3rgz_A 480 GEIP-------SGLSNCTNLNWISLSNNRLTGEIP--KWIGRLENLAILKLSNNSFSGNIPA-------------ELGDC 537 (768)
T ss_dssp SCCC-------GGGGGCTTCCEEECCSSCCCSCCC--GGGGGCTTCCEEECCSSCCEEECCG-------------GGGGC
T ss_pred CcCC-------HHHhcCCCCCEEEccCCccCCcCC--hHHhcCCCCCEEECCCCcccCcCCH-------------HHcCC
Confidence 2222 124578999999999876443443 3457889999999999876555543 45688
Q ss_pred cccceeecccCcccccccCCCCCCCccCCCCC-----------------------------------cccc------cCC
Q 003193 595 RKLHFLKLQHLPQLTSSGFDLETPTNTQGSNP-----------------------------------GIIA------EGD 633 (840)
Q Consensus 595 ~~L~~L~l~~c~~L~~~~~~~~~~~~~~~~~l-----------------------------------~~l~------~~~ 633 (840)
++|+.|++.+++-...+|.............. ..+. ...
T Consensus 538 ~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~ 617 (768)
T 3rgz_A 538 RSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITS 617 (768)
T ss_dssp TTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTS
T ss_pred CCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhcccccccccccc
Confidence 99999999998765565543211000000000 0000 000
Q ss_pred CCCcccccccccccCCcceEecccccchhhcccCCccccccCCCceEEEecccCCcceeechhhHhhhcccceeeecccc
Q 003193 634 PKDFTSLFNERVVFPSLKKLKLSSINVEKIWLNSFSAIESWGKNLTKLTVEKCGRLKFLFSSSMVNGLEQLQQLDISHCK 713 (840)
Q Consensus 634 ~~~~~~~~~~~~~l~~L~~L~l~~c~l~~~~~~~~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~~l~sL~~L~i~~C~ 713 (840)
..-....+.....+++|+.|++++|.++..... ..+.+++|+.|+++++.--..+| ..+.++++|+.|+++++.
T Consensus 618 ~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~----~l~~l~~L~~L~Ls~N~l~g~ip--~~l~~L~~L~~LdLs~N~ 691 (768)
T 3rgz_A 618 RVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPK----EIGSMPYLFILNLGHNDISGSIP--DEVGDLRGLNILDLSSNK 691 (768)
T ss_dssp CEEEEECCCSCSSSBCCCEEECCSSCCBSCCCG----GGGGCTTCCEEECCSSCCCSCCC--GGGGGCTTCCEEECCSSC
T ss_pred ceecccCchhhhccccccEEECcCCcccccCCH----HHhccccCCEEeCcCCccCCCCC--hHHhCCCCCCEEECCCCc
Confidence 000001122345678999999999988743222 24678999999997774333554 348899999999999976
Q ss_pred cchhhhccCcccccCccccccccccccccccCCcceeecCCCCccCCCcceEEeccCCCcceee-----ccccccccccc
Q 003193 714 SMNEVINTRVGRDDNMIEMVFPKLVSLQLSHLPKLTRFGIGDSVEFPSLCQLQIACCPNLKIFI-----CSCTEEMSSEK 788 (840)
Q Consensus 714 ~L~~i~~~~~~~~~~~~~~~l~sL~~L~i~~c~~L~~l~~~~~~~l~sL~~L~i~~C~~L~~l~-----~~~~~~~~~~~ 788 (840)
--..+ |+.+.. +++|+.|++++++--..+|.++ .+.++....+.++|.|--.| ...+++|+.++
T Consensus 692 l~g~i---p~~l~~------l~~L~~L~ls~N~l~g~iP~~~--~~~~~~~~~~~gN~~Lcg~~l~~C~~~~~~~~~~~~ 760 (768)
T 3rgz_A 692 LDGRI---PQAMSA------LTMLTEIDLSNNNLSGPIPEMG--QFETFPPAKFLNNPGLCGYPLPRCDPSNADGYAHHQ 760 (768)
T ss_dssp CEECC---CGGGGG------CCCCSEEECCSSEEEEECCSSS--SGGGSCGGGGCSCTEEESTTSCCCCSCC--------
T ss_pred ccCcC---ChHHhC------CCCCCEEECcCCcccccCCCch--hhccCCHHHhcCCchhcCCCCcCCCCCccCCCCCCC
Confidence 44455 666655 8999999999997666777654 46777777788888764332 23335799999
Q ss_pred ccc
Q 003193 789 NIH 791 (840)
Q Consensus 789 ~i~ 791 (840)
|+|
T Consensus 761 ~~~ 763 (768)
T 3rgz_A 761 RSH 763 (768)
T ss_dssp ---
T ss_pred Ccc
Confidence 988
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.2e-33 Score=327.34 Aligned_cols=509 Identities=16% Similarity=0.110 Sum_probs=294.7
Q ss_pred cEEEeccCCcccCCcccCCCcceeEeeccCccccCCCchhhcCCCCCcEEEcCCCCCCCC-ChhhcCCCCCCEEEccCCc
Q 003193 213 TAISIPFRGIYELPERLGFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSL-PSSLGCLINLRTLSLENCL 291 (840)
Q Consensus 213 ~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~l-p~~l~~l~~L~~L~L~~~~ 291 (840)
+.++.+++++..+|..+. +++++|++++|.+. .++...|.++++|++|++++|.++.+ |..++++++|++|++++|.
T Consensus 7 ~~~~cs~~~L~~ip~~~~-~~l~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~ 84 (680)
T 1ziw_A 7 EVADCSHLKLTQVPDDLP-TNITVLNLTHNQLR-RLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNE 84 (680)
T ss_dssp SEEECCSSCCSSCCSCSC-TTCSEEECCSSCCC-CCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSC
T ss_pred CeeECCCCCccccccccC-CCCcEEECCCCCCC-CcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCc
Confidence 467888888888987664 79999999999877 46666679999999999999999876 7789999999999999999
Q ss_pred cCC-cc-cccCCCCCCEEeecCCCCcccC-hhhcCCCCCCEEEccCCCCCCccCcccccCCCCCcEEEccCCcccceecC
Q 003193 292 VVD-VA-IIGDLKKLEILSLKHSSIEQLP-REIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGNSFTQWKVEG 368 (840)
Q Consensus 292 ~~~-~~-~i~~L~~L~~L~l~~~~l~~lp-~~i~~L~~L~~L~L~~~~~l~~~p~~~l~~L~~L~~L~l~~~~~~~~~~~ 368 (840)
+.. |. .++++++|++|++++|+++.+| ..++++++|++|++++ +.+...++..++++++|++|++++|.+....+
T Consensus 85 l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~-n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~- 162 (680)
T 1ziw_A 85 LSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSH-NGLSSTKLGTQVQLENLQELLLSNNKIQALKS- 162 (680)
T ss_dssp CCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCS-SCCSCCCCCSSSCCTTCCEEECCSSCCCCBCH-
T ss_pred cCccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCC-CcccccCchhhcccccCCEEEccCCcccccCH-
Confidence 988 44 6999999999999999999887 5799999999999999 46666666668999999999999987653221
Q ss_pred CCCCCcccc--cCCCCCCeEEEecCCCCCCCCcc--cccCcceEEEEEcCccCC-------CCCccccceEEEeeCCCcc
Q 003193 369 QSNASLGEL--KQLSRLTTLEVHIPDAQVMPQDL--VFVELERFRICIGDVWSW-------SDGYETSKTLKLQLNNSTY 437 (840)
Q Consensus 369 ~~~~~l~~l--~~l~~L~~L~l~~~~~~~~~~~~--~~~~L~~L~l~~~~~~~~-------~~~~~~l~~L~l~~~~~~~ 437 (840)
..+ ..+++|+.|++++|.+...+... .+.+|+.+.+........ ......++.|+++++....
T Consensus 163 ------~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~ 236 (680)
T 1ziw_A 163 ------EELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLST 236 (680)
T ss_dssp ------HHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCE
T ss_pred ------HHhhccccccccEEECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccc
Confidence 222 24578999999998877655432 344444444321110000 0011344444444433332
Q ss_pred ch-hhHHHHHh--cccceeeccccccccccccccchhhcccccEEEeecCCCeEEEEeCCCccccc--------------
Q 003193 438 LG-YGMKMLLK--RTEDLHLDELAGFKNVVHELDDEEGFARLRHLHVHNGPEILHILNSDGRVGTF-------------- 500 (840)
Q Consensus 438 ~~-~~~~~~l~--~L~~L~L~~~~~~~~~~~~l~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~-------------- 500 (840)
.+ .++.. ++ +|+.|++++|......+..+ +.+++|++|++++|.- ..+. ......+
T Consensus 237 ~~~~~~~~-l~~~~L~~L~Ls~n~l~~~~~~~~---~~l~~L~~L~L~~n~l-~~~~--~~~~~~l~~L~~L~L~~~~~~ 309 (680)
T 1ziw_A 237 TSNTTFLG-LKWTNLTMLDLSYNNLNVVGNDSF---AWLPQLEYFFLEYNNI-QHLF--SHSLHGLFNVRYLNLKRSFTK 309 (680)
T ss_dssp ECTTTTGG-GGGSCCCEEECTTSCCCEECTTTT---TTCTTCCEEECCSCCB-SEEC--TTTTTTCTTCCEEECTTCBCC
T ss_pred cChhHhhc-cCcCCCCEEECCCCCcCccCcccc---cCcccccEeeCCCCcc-CccC--hhhhcCCCCccEEeccchhhh
Confidence 21 11111 22 25555555444332222233 3445555555554431 1111 1122334
Q ss_pred -------------------cccceeecccccccccccccccccCCCCcccCCccEEEEecCC-CcccccchhHHhh--cc
Q 003193 501 -------------------PLLESLFLHNLINLEKVCDGKVRLNEDDKSFSNLRIIKVEGCH-RVKHLFPFSLVKN--LL 558 (840)
Q Consensus 501 -------------------~~L~~L~l~~~~~L~~~~~~~~~~~~~~~~~~~L~~L~l~~c~-~L~~l~~~~~~~~--l~ 558 (840)
++|++|+++++ .+..+... ....+++|++|++++|. .+..++... +.. .+
T Consensus 310 ~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n-~l~~~~~~------~~~~l~~L~~L~Ls~n~~~~~~l~~~~-f~~~~~~ 381 (680)
T 1ziw_A 310 QSISLASLPKIDDFSFQWLKCLEHLNMEDN-DIPGIKSN------MFTGLINLKYLSLSNSFTSLRTLTNET-FVSLAHS 381 (680)
T ss_dssp C------CCEECTTTTTTCTTCCEEECCSC-CBCCCCTT------TTTTCTTCCEEECTTCBSCCCEECTTT-TGGGTTS
T ss_pred cccccccccccChhhcccCCCCCEEECCCC-ccCCCChh------HhccccCCcEEECCCCchhhhhcchhh-hcccccC
Confidence 44444444442 12221111 12234445555544432 111111100 000 12
Q ss_pred cccEEEEecccccceeeccccccccccCCccccccccccceeecccCcccccccCCC--------------------CCC
Q 003193 559 QLQKVKVTDCTNLKLIVGKESENSAHKNGSISGVYFRKLHFLKLQHLPQLTSSGFDL--------------------ETP 618 (840)
Q Consensus 559 ~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~c~~L~~~~~~~--------------------~~~ 618 (840)
+|+.|++++|.- ..+.. ..+..+++|+.|++.++.--..++... ...
T Consensus 382 ~L~~L~L~~n~l-~~~~~------------~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~ 448 (680)
T 1ziw_A 382 PLHILNLTKNKI-SKIES------------DAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRN 448 (680)
T ss_dssp CCCEEECTTSCC-CEECT------------TTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTT
T ss_pred cCceEECCCCCC-CeECh------------hhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChh
Confidence 333333333221 11110 122344555555554443221111100 000
Q ss_pred CccCCCCCcccccCCCC--CcccccccccccCCcceEecccccchhhcccCCccccccCCCceEEEecccCCcceeech-
Q 003193 619 TNTQGSNPGIIAEGDPK--DFTSLFNERVVFPSLKKLKLSSINVEKIWLNSFSAIESWGKNLTKLTVEKCGRLKFLFSS- 695 (840)
Q Consensus 619 ~~~~~~~l~~l~~~~~~--~~~~~~~~~~~l~~L~~L~l~~c~l~~~~~~~~~~~~~~l~~L~~L~i~~C~~L~~l~~~- 695 (840)
......+++.+....+. .....+..+..+++|+.|++++|.++.++...+ ..+++|+.|+++++ +++.++..
T Consensus 449 ~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~----~~l~~L~~L~Ls~N-~l~~~~~~~ 523 (680)
T 1ziw_A 449 SFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDML----EGLEKLEILDLQHN-NLARLWKHA 523 (680)
T ss_dssp TTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTT----TTCTTCCEEECCSS-CCGGGGSTT
T ss_pred hhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCCCCcCChhhh----ccccccCEEeCCCC-Cccccchhh
Confidence 11123344444443332 122334445667788888888887776665444 45678888888665 45554211
Q ss_pred ------hhHhhhcccceeeecccccchhhhccCcc-cccCccccccccccccccccCCcceeecCCCCccCCCcceEEec
Q 003193 696 ------SMVNGLEQLQQLDISHCKSMNEVINTRVG-RDDNMIEMVFPKLVSLQLSHLPKLTRFGIGDSVEFPSLCQLQIA 768 (840)
Q Consensus 696 ------~~~~~l~sL~~L~i~~C~~L~~i~~~~~~-~~~~~~~~~l~sL~~L~i~~c~~L~~l~~~~~~~l~sL~~L~i~ 768 (840)
..+.++++|+.|+++++ .++.+ |.+ +.. +++|+.|+++++ +++.++...+..+++|+.|++.
T Consensus 524 ~~~~~~~~~~~l~~L~~L~L~~N-~l~~i---~~~~~~~------l~~L~~L~Ls~N-~l~~l~~~~~~~l~~L~~L~L~ 592 (680)
T 1ziw_A 524 NPGGPIYFLKGLSHLHILNLESN-GFDEI---PVEVFKD------LFELKIIDLGLN-NLNTLPASVFNNQVSLKSLNLQ 592 (680)
T ss_dssp STTSCCCTTTTCTTCCEEECCSS-CCCCC---CTTTTTT------CTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECT
T ss_pred ccCCcchhhcCCCCCCEEECCCC-CCCCC---CHHHccc------ccCcceeECCCC-CCCcCCHhHhCCCCCCCEEECC
Confidence 12567788888888875 45555 443 222 788888888776 5778876655577888888888
Q ss_pred cCCCccee
Q 003193 769 CCPNLKIF 776 (840)
Q Consensus 769 ~C~~L~~l 776 (840)
++ +++.+
T Consensus 593 ~N-~l~~~ 599 (680)
T 1ziw_A 593 KN-LITSV 599 (680)
T ss_dssp TS-CCCBC
T ss_pred CC-cCCcc
Confidence 87 34433
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-33 Score=326.81 Aligned_cols=469 Identities=16% Similarity=0.106 Sum_probs=290.5
Q ss_pred hccCCCcEEEeccCCcccCC-ccc-CCCcceeEeeccCccccCCCchhhcCCCCCcEEEcCCCCCCCC-ChhhcCCCCCC
Q 003193 207 KIDEAPTAISIPFRGIYELP-ERL-GFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSL-PSSLGCLINLR 283 (840)
Q Consensus 207 ~~~~~l~~L~l~~~~~~~l~-~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~l-p~~l~~l~~L~ 283 (840)
....++++|++++|.+..+. ..+ .+++|++|++++|.+....|.. |.++++|++|++++|.++.+ |..++++++|+
T Consensus 54 ~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~-~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~ 132 (606)
T 3t6q_A 54 SRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETA-LSGPKALKHLFFIQTGISSIDFIPLHNQKTLE 132 (606)
T ss_dssp TTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTT-TSSCTTCCEEECTTSCCSCGGGSCCTTCTTCC
T ss_pred ccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhh-hcccccccEeeccccCcccCCcchhccCCccc
Confidence 56789999999999997664 434 7999999999999987555554 58999999999999999987 67799999999
Q ss_pred EEEccCCccCC--cccccCCCCCCEEeecCCCCccc-ChhhcCCCCCC--EEEccCCCCCCccCcccccCCCCCcEEEcc
Q 003193 284 TLSLENCLVVD--VAIIGDLKKLEILSLKHSSIEQL-PREIGQLTCLK--LLDLSNCSKLKEIRPNVISNLTRLEELYMG 358 (840)
Q Consensus 284 ~L~L~~~~~~~--~~~i~~L~~L~~L~l~~~~l~~l-p~~i~~L~~L~--~L~L~~~~~l~~~p~~~l~~L~~L~~L~l~ 358 (840)
+|++++|.+.. ++.+..+++|++|++++|.++.+ |..++.+++|+ +|++++ +.+..+++.. ....+|++|+++
T Consensus 133 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~-n~l~~~~~~~-~~~~~L~~L~l~ 210 (606)
T 3t6q_A 133 SLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNG-NDIAGIEPGA-FDSAVFQSLNFG 210 (606)
T ss_dssp EEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTT-CCCCEECTTT-TTTCEEEEEECT
T ss_pred EEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCC-CccCccChhH-hhhccccccccC
Confidence 99999999887 36666799999999999999987 56689999999 999999 5777777764 455789999998
Q ss_pred CCcccceec----------------------CCCCCCcccccCCCCCCeEEEecCCCCCCCCcc--cccCcceEEEEEcC
Q 003193 359 NSFTQWKVE----------------------GQSNASLGELKQLSRLTTLEVHIPDAQVMPQDL--VFVELERFRICIGD 414 (840)
Q Consensus 359 ~~~~~~~~~----------------------~~~~~~l~~l~~l~~L~~L~l~~~~~~~~~~~~--~~~~L~~L~l~~~~ 414 (840)
+|....... ......+..+..+ +|+.|+++.+.+..++... .+++|+.|++..+.
T Consensus 211 ~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~-~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 289 (606)
T 3t6q_A 211 GTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEM-SVESINLQKHYFFNISSNTFHCFSGLQELDLTATH 289 (606)
T ss_dssp TCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGS-EEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSC
T ss_pred CchhHHHHhhhccccchhheechhhccccccccChhHhchhhcC-ceeEEEeecCccCccCHHHhccccCCCEEeccCCc
Confidence 874210000 0000011111111 4556666666555554432 45555555554333
Q ss_pred ---ccCCCCCccccceEEEeeCCCccchhhHHHHHhcccceeecccccccccccc-ccchhhcccccEEEeecCCCeEEE
Q 003193 415 ---VWSWSDGYETSKTLKLQLNNSTYLGYGMKMLLKRTEDLHLDELAGFKNVVHE-LDDEEGFARLRHLHVHNGPEILHI 490 (840)
Q Consensus 415 ---~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~-l~~~~~l~~L~~L~l~~~~~l~~~ 490 (840)
.+..+..+++++.|+++++.....+......+++|+.|++++|.....++.. + ..+++|++|+++++. +..+
T Consensus 290 l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~---~~l~~L~~L~l~~n~-l~~~ 365 (606)
T 3t6q_A 290 LSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCL---ENLENLRELDLSHDD-IETS 365 (606)
T ss_dssp CSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTT---TTCTTCCEEECCSSC-CCEE
T ss_pred cCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhh---hccCcCCEEECCCCc-cccc
Confidence 2223444455555555555444433222222455666666555443333322 2 445566666665554 2222
Q ss_pred EeCCCccccccccceeecccccccccccccccccCCCCcccCCccEEEEecCCCcccccchhHHhhcccccEEEEecccc
Q 003193 491 LNSDGRVGTFPLLESLFLHNLINLEKVCDGKVRLNEDDKSFSNLRIIKVEGCHRVKHLFPFSLVKNLLQLQKVKVTDCTN 570 (840)
Q Consensus 491 ~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~i~~c~~ 570 (840)
.........+++|++|+++++. +..+... ....+++|+.|++++|. ++...+...+..+++|++|++++|.-
T Consensus 366 ~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~------~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~l~~n~l 437 (606)
T 3t6q_A 366 DCCNLQLRNLSHLQSLNLSYNE-PLSLKTE------AFKECPQLELLDLAFTR-LKVKDAQSPFQNLHLLKVLNLSHSLL 437 (606)
T ss_dssp EESTTTTTTCTTCCEEECCSCS-CEEECTT------TTTTCTTCSEEECTTCC-EECCTTCCTTTTCTTCCEEECTTCCC
T ss_pred cCcchhcccCCCCCEEECCCCc-CCcCCHH------HhcCCccCCeEECCCCc-CCCcccchhhhCcccCCEEECCCCcc
Confidence 2112233455566666665532 2222111 12345556666665543 22222222234555666666655532
Q ss_pred cceeeccccccccccCCccccccccccceeecccCcccccccCCCCCCCccCCCCCcccccCCCCCcccccccccccCCc
Q 003193 571 LKLIVGKESENSAHKNGSISGVYFRKLHFLKLQHLPQLTSSGFDLETPTNTQGSNPGIIAEGDPKDFTSLFNERVVFPSL 650 (840)
Q Consensus 571 l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~c~~L~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~l~~L 650 (840)
-...+ ..+..+++|++|++++++--... ......+..+++|
T Consensus 438 ~~~~~-------------~~~~~l~~L~~L~L~~n~l~~~~--------------------------~~~~~~~~~l~~L 478 (606)
T 3t6q_A 438 DISSE-------------QLFDGLPALQHLNLQGNHFPKGN--------------------------IQKTNSLQTLGRL 478 (606)
T ss_dssp BTTCT-------------TTTTTCTTCCEEECTTCBCGGGE--------------------------ECSSCGGGGCTTC
T ss_pred CCcCH-------------HHHhCCCCCCEEECCCCCCCccc--------------------------cccchhhccCCCc
Confidence 11111 12334556666666555321100 0011234568999
Q ss_pred ceEecccccchhhcccCCccccccCCCceEEEecccCCcceeechhhHhhhcccceeeecccccchhhhccCcccccCcc
Q 003193 651 KKLKLSSINVEKIWLNSFSAIESWGKNLTKLTVEKCGRLKFLFSSSMVNGLEQLQQLDISHCKSMNEVINTRVGRDDNMI 730 (840)
Q Consensus 651 ~~L~l~~c~l~~~~~~~~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~~l~sL~~L~i~~C~~L~~i~~~~~~~~~~~~ 730 (840)
++|++++|.++.++...+ ..+++|+.|++++| +++..++ ..+.++++| .|++++|. +..+. |+.+..
T Consensus 479 ~~L~Ls~n~l~~~~~~~~----~~l~~L~~L~Ls~N-~l~~~~~-~~l~~l~~L-~L~L~~N~-l~~~~--~~~~~~--- 545 (606)
T 3t6q_A 479 EILVLSFCDLSSIDQHAF----TSLKMMNHVDLSHN-RLTSSSI-EALSHLKGI-YLNLASNH-ISIIL--PSLLPI--- 545 (606)
T ss_dssp CEEECTTSCCCEECTTTT----TTCTTCCEEECCSS-CCCGGGG-GGGTTCCSC-EEECCSSC-CCCCC--GGGHHH---
T ss_pred cEEECCCCccCccChhhh----ccccCCCEEECCCC-ccCcCCh-hHhCccccc-EEECcCCc-ccccC--Hhhccc---
Confidence 999999998887765544 56799999999777 5666543 457889999 99999964 54442 333333
Q ss_pred ccccccccccccccCC
Q 003193 731 EMVFPKLVSLQLSHLP 746 (840)
Q Consensus 731 ~~~l~sL~~L~i~~c~ 746 (840)
+++|+.|+++++|
T Consensus 546 ---l~~L~~L~l~~N~ 558 (606)
T 3t6q_A 546 ---LSQQRTINLRQNP 558 (606)
T ss_dssp ---HHTSSEEECTTCC
T ss_pred ---CCCCCEEeCCCCC
Confidence 8899999999987
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-32 Score=313.28 Aligned_cols=487 Identities=18% Similarity=0.185 Sum_probs=334.7
Q ss_pred cCccchhhhhhccCCCcEEEeccCCcccCCcc--cCCCcceeEeeccCccccCCCchhhcCCCCCcEEEcCCCCCCCCC-
Q 003193 197 NVADLKEELDKIDEAPTAISIPFRGIYELPER--LGFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLP- 273 (840)
Q Consensus 197 ~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp- 273 (840)
.+..+..+|...+..+++|++++|.+..++.. ..+++|++|++++|.+.. ++...|.++++|++|++++|.++.+|
T Consensus 15 ~~~~l~~ip~~l~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~-i~~~~~~~l~~L~~L~L~~n~l~~~~~ 93 (570)
T 2z63_A 15 MELNFYKIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQT-IEDGAYQSLSHLSTLILTGNPIQSLAL 93 (570)
T ss_dssp CSSCCSSCCSSSCSSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCE-ECTTTTTTCTTCCEEECTTCCCCEECT
T ss_pred CCCCccccCCCccccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCc-cCcccccCchhCCEEeCcCCcCCccCH
Confidence 34556667776778999999999999877643 379999999999998764 55556689999999999999998775
Q ss_pred hhhcCCCCCCEEEccCCccCC-c-ccccCCCCCCEEeecCCCCcc--cChhhcCCCCCCEEEccCCCCCCccCcccccCC
Q 003193 274 SSLGCLINLRTLSLENCLVVD-V-AIIGDLKKLEILSLKHSSIEQ--LPREIGQLTCLKLLDLSNCSKLKEIRPNVISNL 349 (840)
Q Consensus 274 ~~l~~l~~L~~L~L~~~~~~~-~-~~i~~L~~L~~L~l~~~~l~~--lp~~i~~L~~L~~L~L~~~~~l~~~p~~~l~~L 349 (840)
..|+++++|++|++++|.+.. + ..++++++|++|++++|.++. +|..++++++|++|++++ +.+..+++..++.+
T Consensus 94 ~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~l 172 (570)
T 2z63_A 94 GAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSS-NKIQSIYCTDLRVL 172 (570)
T ss_dssp TTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTT-SCCCEECGGGGHHH
T ss_pred hhhcCccccccccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcC-CccceecHHHccch
Confidence 689999999999999999888 3 369999999999999999885 789999999999999999 57777776668888
Q ss_pred CCC----cEEEccCCcccceecCCCCCCcccccCCCCCCeEEEecCCCCC--CCCcc-cccCcceEEEEEcCccC-----
Q 003193 350 TRL----EELYMGNSFTQWKVEGQSNASLGELKQLSRLTTLEVHIPDAQV--MPQDL-VFVELERFRICIGDVWS----- 417 (840)
Q Consensus 350 ~~L----~~L~l~~~~~~~~~~~~~~~~l~~l~~l~~L~~L~l~~~~~~~--~~~~~-~~~~L~~L~l~~~~~~~----- 417 (840)
++| ++|++++|.+....+ ..+... +|+.|+++.+.... ++..+ .+++++...+..+....
T Consensus 173 ~~L~~~~~~L~l~~n~l~~~~~-------~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~ 244 (570)
T 2z63_A 173 HQMPLLNLSLDLSLNPMNFIQP-------GAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLE 244 (570)
T ss_dssp HTCTTCCCEEECTTCCCCEECT-------TTTTTC-EEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCE
T ss_pred hccchhhhhcccCCCCceecCH-------HHhccC-cceeEecccccccccchhhhhcCccccceeeeccccccCchhhh
Confidence 888 899999987654332 223333 68888888763221 11111 34444444443221110
Q ss_pred -----CCCCccc--cceEEEeeC-CCc-cchhhHHHHHhcccceeeccccccccccccccchhhcccccEEEeecCCCeE
Q 003193 418 -----WSDGYET--SKTLKLQLN-NST-YLGYGMKMLLKRTEDLHLDELAGFKNVVHELDDEEGFARLRHLHVHNGPEIL 488 (840)
Q Consensus 418 -----~~~~~~~--l~~L~l~~~-~~~-~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~~~~l~~L~~L~l~~~~~l~ 488 (840)
.+..... ++.+.+..+ ... ..+.++. .+++|+.|++.++... .++..+ ..+ +|++|++.+|...
T Consensus 245 ~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~-~l~~L~~L~l~~~~l~-~l~~~~---~~~-~L~~L~l~~n~~~- 317 (570)
T 2z63_A 245 KFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFN-CLTNVSSFSLVSVTIE-RVKDFS---YNF-GWQHLELVNCKFG- 317 (570)
T ss_dssp ECCTTTTGGGGGSEEEEEEEEETTEEESCSTTTTG-GGTTCSEEEEESCEEC-SCCBCC---SCC-CCSEEEEESCBCS-
T ss_pred hcchhhhccccccchhhhhhhcchhhhhhchhhhc-CcCcccEEEecCccch-hhhhhh---ccC-CccEEeeccCccc-
Confidence 1111111 233333332 111 1222222 3577888888877543 455555 445 8888888887622
Q ss_pred EEEeCCCccccccccceeecccccccccccccccccCCCCcccCCccEEEEecCCCcccccc-hhHHhhcccccEEEEec
Q 003193 489 HILNSDGRVGTFPLLESLFLHNLINLEKVCDGKVRLNEDDKSFSNLRIIKVEGCHRVKHLFP-FSLVKNLLQLQKVKVTD 567 (840)
Q Consensus 489 ~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~-~~~~~~l~~L~~L~i~~ 567 (840)
.+ ....+++|++|++.++...... + ...+++|+.|++++|. ++.... ...+..+++|++|++++
T Consensus 318 ~l-----~~~~l~~L~~L~l~~n~~~~~~-----~----~~~~~~L~~L~l~~n~-l~~~~~~~~~~~~~~~L~~L~l~~ 382 (570)
T 2z63_A 318 QF-----PTLKLKSLKRLTFTSNKGGNAF-----S----EVDLPSLEFLDLSRNG-LSFKGCCSQSDFGTTSLKYLDLSF 382 (570)
T ss_dssp SC-----CBCBCSSCCEEEEESCBSCCBC-----C----CCBCTTCCEEECCSSC-CBEEEEEEHHHHTCSCCCEEECCS
T ss_pred cc-----CcccccccCEEeCcCCcccccc-----c----cccCCCCCEEeCcCCc-cCccccccccccccCccCEEECCC
Confidence 11 1246788888888876532211 1 2567888888888764 443320 13456788888888888
Q ss_pred ccccceeeccccccccccCCccccccccccceeecccCcccccccCCCCCCCccCCCCCcccccCCCCCccccccccccc
Q 003193 568 CTNLKLIVGKESENSAHKNGSISGVYFRKLHFLKLQHLPQLTSSGFDLETPTNTQGSNPGIIAEGDPKDFTSLFNERVVF 647 (840)
Q Consensus 568 c~~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~c~~L~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~l 647 (840)
|.- ..++. .+..+++|++|++.++.-....+. .....+
T Consensus 383 n~l-~~~~~-------------~~~~l~~L~~L~l~~n~l~~~~~~----------------------------~~~~~l 420 (570)
T 2z63_A 383 NGV-ITMSS-------------NFLGLEQLEHLDFQHSNLKQMSEF----------------------------SVFLSL 420 (570)
T ss_dssp CSE-EEEEE-------------EEETCTTCCEEECTTSEEESCTTS----------------------------CTTTTC
T ss_pred Ccc-ccccc-------------cccccCCCCEEEccCCccccccch----------------------------hhhhcC
Confidence 753 33322 234778888888887643222111 112468
Q ss_pred CCcceEecccccchhhcccCCccccccCCCceEEEecccCCc-ceeechhhHhhhcccceeeecccccchhhhccCcccc
Q 003193 648 PSLKKLKLSSINVEKIWLNSFSAIESWGKNLTKLTVEKCGRL-KFLFSSSMVNGLEQLQQLDISHCKSMNEVINTRVGRD 726 (840)
Q Consensus 648 ~~L~~L~l~~c~l~~~~~~~~~~~~~~l~~L~~L~i~~C~~L-~~l~~~~~~~~l~sL~~L~i~~C~~L~~i~~~~~~~~ 726 (840)
++|++|++++|.++......+ ..+++|+.|++++|.-. ..+| ..+..+++|++|++++|. +..+. |..+.
T Consensus 421 ~~L~~L~l~~n~l~~~~~~~~----~~l~~L~~L~l~~n~l~~~~~p--~~~~~l~~L~~L~l~~n~-l~~~~--~~~~~ 491 (570)
T 2z63_A 421 RNLIYLDISHTHTRVAFNGIF----NGLSSLEVLKMAGNSFQENFLP--DIFTELRNLTFLDLSQCQ-LEQLS--PTAFN 491 (570)
T ss_dssp TTCCEEECTTSCCEECCTTTT----TTCTTCCEEECTTCEEGGGEEC--SCCTTCTTCCEEECTTSC-CCEEC--TTTTT
T ss_pred CCCCEEeCcCCcccccchhhh----hcCCcCcEEECcCCcCccccch--hhhhcccCCCEEECCCCc-cccCC--hhhhh
Confidence 999999999997776544433 56799999999888533 2344 447889999999999975 44442 44444
Q ss_pred cCccccccccccccccccCCcceeecCCCCccCCCcceEEeccCCCc
Q 003193 727 DNMIEMVFPKLVSLQLSHLPKLTRFGIGDSVEFPSLCQLQIACCPNL 773 (840)
Q Consensus 727 ~~~~~~~l~sL~~L~i~~c~~L~~l~~~~~~~l~sL~~L~i~~C~~L 773 (840)
. +++|+.|++++| +++.++...+.++++|++|++.++|--
T Consensus 492 ~------l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~N~~~ 531 (570)
T 2z63_A 492 S------LSSLQVLNMASN-QLKSVPDGIFDRLTSLQKIWLHTNPWD 531 (570)
T ss_dssp T------CTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred c------ccCCCEEeCCCC-cCCCCCHHHhhcccCCcEEEecCCccc
Confidence 4 899999999998 588887666668999999999998733
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6e-32 Score=310.09 Aligned_cols=475 Identities=15% Similarity=0.130 Sum_probs=231.1
Q ss_pred eccCCcccCCcccCCCcceeEeeccCccccCCCchhhcCCCCCcEEEcCCCCCCCCC-hhhcCCCCCCEEEccCCccCC-
Q 003193 217 IPFRGIYELPERLGFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLP-SSLGCLINLRTLSLENCLVVD- 294 (840)
Q Consensus 217 l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp-~~l~~l~~L~~L~L~~~~~~~- 294 (840)
.+++.+..+|..+. +++++|++++|.+....|.. |.++++|++|++++|.++.++ ..|+++++|++|++++|.+..
T Consensus 12 ~~~~~l~~ip~~~~-~~L~~L~Ls~n~l~~~~~~~-~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~ 89 (549)
T 2z81_A 12 GRSRSFTSIPSGLT-AAMKSLDLSFNKITYIGHGD-LRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSL 89 (549)
T ss_dssp CTTSCCSSCCSCCC-TTCCEEECCSSCCCEECSST-TSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSC
T ss_pred CCCCccccccccCC-CCccEEECcCCccCccChhh-hhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCcc
Confidence 33444444444332 44555555555544322222 355555555555555555432 345555555555555555554
Q ss_pred c-ccccCCCCCCEEeecCCCCcc--cChhhcCCCCCCEEEccCCCCCCccCcccccCCCCCcEEEccCCcccceecCCCC
Q 003193 295 V-AIIGDLKKLEILSLKHSSIEQ--LPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGNSFTQWKVEGQSN 371 (840)
Q Consensus 295 ~-~~i~~L~~L~~L~l~~~~l~~--lp~~i~~L~~L~~L~L~~~~~l~~~p~~~l~~L~~L~~L~l~~~~~~~~~~~~~~ 371 (840)
+ ..++++++|++|++++|.++. .|..++++++|++|++++|..++.+|...++++++|++|++++|.+....+
T Consensus 90 ~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~---- 165 (549)
T 2z81_A 90 SSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQS---- 165 (549)
T ss_dssp CHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECT----
T ss_pred CHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccCh----
Confidence 2 225555555555555555542 234455555555555555433444544335555555555555554432221
Q ss_pred CCcccccCCCCCCeEEEecCCCCCCCCcc--cccCcceEEEEEcCccC-------CCCCccccceEEEeeCCCccc-hhh
Q 003193 372 ASLGELKQLSRLTTLEVHIPDAQVMPQDL--VFVELERFRICIGDVWS-------WSDGYETSKTLKLQLNNSTYL-GYG 441 (840)
Q Consensus 372 ~~l~~l~~l~~L~~L~l~~~~~~~~~~~~--~~~~L~~L~l~~~~~~~-------~~~~~~~l~~L~l~~~~~~~~-~~~ 441 (840)
..+..+++|+.|+++.+....++... .+++|+.|++..+.... ......+++.+++.++..... +..
T Consensus 166 ---~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~ 242 (549)
T 2z81_A 166 ---QSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNE 242 (549)
T ss_dssp ---TTTTTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHH
T ss_pred ---hhhhccccCceEecccCcccccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHH
Confidence 33444445555555554443333322 24445554444333211 112234455555554322211 111
Q ss_pred HH---HHHhcccceeecccccccc--ccc-cccchhhcccccEEEeecCCCeEEE--EeCCCccccccccceeecccccc
Q 003193 442 MK---MLLKRTEDLHLDELAGFKN--VVH-ELDDEEGFARLRHLHVHNGPEILHI--LNSDGRVGTFPLLESLFLHNLIN 513 (840)
Q Consensus 442 ~~---~~l~~L~~L~L~~~~~~~~--~~~-~l~~~~~l~~L~~L~l~~~~~l~~~--~~~~~~~~~~~~L~~L~l~~~~~ 513 (840)
+. ..+++|+.+++.+|..... .+. .......+++|+.|.+.++..-... .+.......+++|++|.+.++ +
T Consensus 243 l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n-~ 321 (549)
T 2z81_A 243 LLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENS-K 321 (549)
T ss_dssp HHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESS-C
T ss_pred HHHHhhhhccccccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccC-c
Confidence 11 1123455555555432210 000 0000133455555555544310000 000000012334555555543 2
Q ss_pred cccccccccccCCCCcccCCccEEEEecCCCcccccc-hhHHhhcccccEEEEecccccceeeccccccccccCCccccc
Q 003193 514 LEKVCDGKVRLNEDDKSFSNLRIIKVEGCHRVKHLFP-FSLVKNLLQLQKVKVTDCTNLKLIVGKESENSAHKNGSISGV 592 (840)
Q Consensus 514 L~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~-~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~l~ 592 (840)
++.++... ...+++|+.|+++++.-...+++ ...+..+++|++|++++|. +..++... ..+.
T Consensus 322 l~~ip~~~------~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~----------~~~~ 384 (549)
T 2z81_A 322 VFLVPCSF------SQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNH-LRSMQKTG----------EILL 384 (549)
T ss_dssp CCCCCHHH------HHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSC-CCCHHHHH----------HHGG
T ss_pred cccCCHHH------HhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCc-ccccccch----------hhhh
Confidence 33222110 01345555555555432211111 0112344555555555542 22111000 0122
Q ss_pred cccccceeecccCcccccccCCCCCCCccCCCCCcccccCCCCCcccccccccccCCcceEecccccchhhcccCCcccc
Q 003193 593 YFRKLHFLKLQHLPQLTSSGFDLETPTNTQGSNPGIIAEGDPKDFTSLFNERVVFPSLKKLKLSSINVEKIWLNSFSAIE 672 (840)
Q Consensus 593 ~l~~L~~L~l~~c~~L~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~l~~~~~~~~~~~~ 672 (840)
.+++|++|+++++ .++.+ +.....+++|++|++++|.++.++...
T Consensus 385 ~l~~L~~L~Ls~N-~l~~l-----------------------------p~~~~~~~~L~~L~Ls~N~l~~l~~~~----- 429 (549)
T 2z81_A 385 TLKNLTSLDISRN-TFHPM-----------------------------PDSCQWPEKMRFLNLSSTGIRVVKTCI----- 429 (549)
T ss_dssp GCTTCCEEECTTC-CCCCC-----------------------------CSCCCCCTTCCEEECTTSCCSCCCTTS-----
T ss_pred cCCCCCEEECCCC-CCccC-----------------------------ChhhcccccccEEECCCCCcccccchh-----
Confidence 4555555555554 23332 333456789999999999887765332
Q ss_pred ccCCCceEEEecccCCcceeechhhHhhhcccceeeecccccchhhhccCcccccCccccccccccccccccCCcceeec
Q 003193 673 SWGKNLTKLTVEKCGRLKFLFSSSMVNGLEQLQQLDISHCKSMNEVINTRVGRDDNMIEMVFPKLVSLQLSHLPKLTRFG 752 (840)
Q Consensus 673 ~~l~~L~~L~i~~C~~L~~l~~~~~~~~l~sL~~L~i~~C~~L~~i~~~~~~~~~~~~~~~l~sL~~L~i~~c~~L~~l~ 752 (840)
.++|+.|++++| +++.. ...+++|++|++++| .++.+ |.. .. +++|+.|+++++ +++.++
T Consensus 430 --~~~L~~L~Ls~N-~l~~~-----~~~l~~L~~L~Ls~N-~l~~i---p~~-~~------l~~L~~L~Ls~N-~l~~~~ 489 (549)
T 2z81_A 430 --PQTLEVLDVSNN-NLDSF-----SLFLPRLQELYISRN-KLKTL---PDA-SL------FPVLLVMKISRN-QLKSVP 489 (549)
T ss_dssp --CTTCSEEECCSS-CCSCC-----CCCCTTCCEEECCSS-CCSSC---CCG-GG------CTTCCEEECCSS-CCCCCC
T ss_pred --cCCceEEECCCC-Chhhh-----cccCChhcEEECCCC-ccCcC---CCc-cc------CccCCEEecCCC-ccCCcC
Confidence 268999999777 57665 247889999999996 56666 542 12 889999999998 588877
Q ss_pred CCCCccCCCcceEEeccCCCc
Q 003193 753 IGDSVEFPSLCQLQIACCPNL 773 (840)
Q Consensus 753 ~~~~~~l~sL~~L~i~~C~~L 773 (840)
...+..+++|+.|++.+||-.
T Consensus 490 ~~~~~~l~~L~~L~l~~N~~~ 510 (549)
T 2z81_A 490 DGIFDRLTSLQKIWLHTNPWD 510 (549)
T ss_dssp TTGGGGCTTCCEEECCSSCBC
T ss_pred HHHHhcCcccCEEEecCCCcc
Confidence 655668899999999999853
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.5e-30 Score=312.06 Aligned_cols=494 Identities=18% Similarity=0.177 Sum_probs=340.1
Q ss_pred ecCccchhhhhhccCCCcEEEeccCCcccCC-ccc-CCCcceeEeeccCccccCCCchhhcCCCCCcEEEcCCCCCCCC-
Q 003193 196 QNVADLKEELDKIDEAPTAISIPFRGIYELP-ERL-GFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSL- 272 (840)
Q Consensus 196 ~~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~-~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~l- 272 (840)
.....+..+|. .+.++++|++++|.+..++ ..+ .+++|++|++++|.....+++..|.++++|++|++++|.+..+
T Consensus 11 cs~~~L~~vP~-lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~ 89 (844)
T 3j0a_A 11 YRFCNLTQVPQ-VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLH 89 (844)
T ss_dssp ESCCCSSCCCS-SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEEC
T ss_pred ccCCCCCCCCC-CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccC
Confidence 34556777787 8899999999999997764 333 8999999999999877777667779999999999999999865
Q ss_pred ChhhcCCCCCCEEEccCCccCC--ccc--ccCCCCCCEEeecCCCCcccC--hhhcCCCCCCEEEccCCCCCCccCcccc
Q 003193 273 PSSLGCLINLRTLSLENCLVVD--VAI--IGDLKKLEILSLKHSSIEQLP--REIGQLTCLKLLDLSNCSKLKEIRPNVI 346 (840)
Q Consensus 273 p~~l~~l~~L~~L~L~~~~~~~--~~~--i~~L~~L~~L~l~~~~l~~lp--~~i~~L~~L~~L~L~~~~~l~~~p~~~l 346 (840)
|..|+++++|++|++++|.+.. +.. ++++++|++|++++|.++.++ ..++++++|++|++++ +.+..+.+..+
T Consensus 90 p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~-N~i~~~~~~~l 168 (844)
T 3j0a_A 90 PDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSS-NQIFLVCEHEL 168 (844)
T ss_dssp TTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEES-SCCCCCCSGGG
T ss_pred HhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCC-CcCCeeCHHHc
Confidence 8899999999999999999886 544 999999999999999998763 5799999999999999 55666554447
Q ss_pred cCC--CCCcEEEccCCcccceecCCCCCCcccccCCCCCCeEEEecCCCCC-CCCc------------------------
Q 003193 347 SNL--TRLEELYMGNSFTQWKVEGQSNASLGELKQLSRLTTLEVHIPDAQV-MPQD------------------------ 399 (840)
Q Consensus 347 ~~L--~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~l~~L~~L~l~~~~~~~-~~~~------------------------ 399 (840)
+.+ ++|+.|++++|.+....+.........+.+. .|+.|++++|.... .+..
T Consensus 169 ~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~-~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~ 247 (844)
T 3j0a_A 169 EPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNM-VLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGF 247 (844)
T ss_dssp HHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTC-CBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSS
T ss_pred ccccCCccceEECCCCccccccccchhhcCCccccC-ceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccc
Confidence 766 8899999988876543221111111111111 37778877764321 0000
Q ss_pred ---------------ccccCcceEEEEEcCc----cCCCCCccccceEEEeeCCCccchhhHHHHHhcccceeecccccc
Q 003193 400 ---------------LVFVELERFRICIGDV----WSWSDGYETSKTLKLQLNNSTYLGYGMKMLLKRTEDLHLDELAGF 460 (840)
Q Consensus 400 ---------------~~~~~L~~L~l~~~~~----~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~ 460 (840)
....+|+.|++..+.. +..+..+++++.|+++.+.....+......+++|+.|++++|...
T Consensus 248 ~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~ 327 (844)
T 3j0a_A 248 GFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLG 327 (844)
T ss_dssp SCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCS
T ss_pred cccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCC
Confidence 0125677777765442 345677889999999998877765544445789999999998765
Q ss_pred ccccccccchhhcccccEEEeecCCCeEEEEeCCCccccccccceeecccccccccccccccccCCCCcccCCccEEEEe
Q 003193 461 KNVVHELDDEEGFARLRHLHVHNGPEILHILNSDGRVGTFPLLESLFLHNLINLEKVCDGKVRLNEDDKSFSNLRIIKVE 540 (840)
Q Consensus 461 ~~~~~~l~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~~~~~L~~L~l~ 540 (840)
...+..+ ..+++|+.|++++|. +..+. ......+++|+.|+++++ .++.+ ..+++|+.|.++
T Consensus 328 ~~~~~~~---~~l~~L~~L~L~~N~-i~~~~--~~~~~~l~~L~~L~Ls~N-~l~~i-----------~~~~~L~~L~l~ 389 (844)
T 3j0a_A 328 ELYSSNF---YGLPKVAYIDLQKNH-IAIIQ--DQTFKFLEKLQTLDLRDN-ALTTI-----------HFIPSIPDIFLS 389 (844)
T ss_dssp CCCSCSC---SSCTTCCEEECCSCC-CCCCC--SSCSCSCCCCCEEEEETC-CSCCC-----------SSCCSCSEEEEE
T ss_pred ccCHHHh---cCCCCCCEEECCCCC-CCccC--hhhhcCCCCCCEEECCCC-CCCcc-----------cCCCCcchhccC
Confidence 5556666 679999999999985 33322 123467899999999985 34332 347899999998
Q ss_pred cCCCcccccchhHHhhcccccEEEEecccccceeeccccccccccCCccccccccccceeecccCcccccccCCCCCCCc
Q 003193 541 GCHRVKHLFPFSLVKNLLQLQKVKVTDCTNLKLIVGKESENSAHKNGSISGVYFRKLHFLKLQHLPQLTSSGFDLETPTN 620 (840)
Q Consensus 541 ~c~~L~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~c~~L~~~~~~~~~~~~ 620 (840)
++ +++.++. ...+++.|+++++. +..+... ..+..+++|+.|+++++. +..++...
T Consensus 390 ~N-~l~~l~~-----~~~~l~~L~ls~N~-l~~l~~~-----------~~~~~l~~L~~L~Ls~N~-l~~~~~~~----- 445 (844)
T 3j0a_A 390 GN-KLVTLPK-----INLTANLIHLSENR-LENLDIL-----------YFLLRVPHLQILILNQNR-FSSCSGDQ----- 445 (844)
T ss_dssp SC-CCCCCCC-----CCTTCCEEECCSCC-CCSSTTH-----------HHHTTCTTCCEEEEESCC-CCCCCSSS-----
T ss_pred CC-Ccccccc-----cccccceeecccCc-cccCchh-----------hhhhcCCccceeeCCCCc-cccccccc-----
Confidence 86 4566643 24678888888754 2222110 123367888888888764 22221110
Q ss_pred cCCCCCcccccCCCCCcccccccccccCCcceEecccccchhhcccCC-ccccccCCCceEEEecccCCcceeechhhHh
Q 003193 621 TQGSNPGIIAEGDPKDFTSLFNERVVFPSLKKLKLSSINVEKIWLNSF-SAIESWGKNLTKLTVEKCGRLKFLFSSSMVN 699 (840)
Q Consensus 621 ~~~~~l~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~l~~~~~~~~-~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~ 699 (840)
....+++|+.|++++|.++..+.... +.....+++|+.|++++| +++.+++ ..+.
T Consensus 446 ----------------------~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~-~~~~ 501 (844)
T 3j0a_A 446 ----------------------TPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHN-YLNSLPP-GVFS 501 (844)
T ss_dssp ----------------------SSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHH-HHTTCCT-TSSS
T ss_pred ----------------------ccccCCccccccCCCCccccccccccchhhhcCcccccEEECCCC-cccccCh-hHcc
Confidence 01236778888888887765543221 122356677888888666 6776654 3456
Q ss_pred hhcccceeeecccccchhhhccCcccccCccccccccccccccccCCcceeecCCCCccCCCcceEEeccCCCc
Q 003193 700 GLEQLQQLDISHCKSMNEVINTRVGRDDNMIEMVFPKLVSLQLSHLPKLTRFGIGDSVEFPSLCQLQIACCPNL 773 (840)
Q Consensus 700 ~l~sL~~L~i~~C~~L~~i~~~~~~~~~~~~~~~l~sL~~L~i~~c~~L~~l~~~~~~~l~sL~~L~i~~C~~L 773 (840)
++++|++|+++++ .++.+ |.+.. .++|+.|+++++. ++.++.. .+++|+.|++.+.|-.
T Consensus 502 ~l~~L~~L~Ls~N-~l~~l---~~~~~-------~~~L~~L~Ls~N~-l~~~~~~---~~~~L~~l~l~~Np~~ 560 (844)
T 3j0a_A 502 HLTALRGLSLNSN-RLTVL---SHNDL-------PANLEILDISRNQ-LLAPNPD---VFVSLSVLDITHNKFI 560 (844)
T ss_dssp SCCSCSEEEEESC-CCSSC---CCCCC-------CSCCCEEEEEEEC-CCCCCSC---CCSSCCEEEEEEECCC
T ss_pred chhhhheeECCCC-CCCcc---Chhhh-------hccccEEECCCCc-CCCCChh---HhCCcCEEEecCCCcc
Confidence 7788888888874 46555 32221 3678888887774 5555433 2567888888776544
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=3.6e-30 Score=296.87 Aligned_cols=475 Identities=17% Similarity=0.172 Sum_probs=317.4
Q ss_pred CcEEEeccCCcccCCcccCCCcceeEeeccCccccCCCchhhcCCCCCcEEEcCCCCCCCC-ChhhcCCCCCCEEEccCC
Q 003193 212 PTAISIPFRGIYELPERLGFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSL-PSSLGCLINLRTLSLENC 290 (840)
Q Consensus 212 l~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~l-p~~l~~l~~L~~L~L~~~ 290 (840)
.+.++-++.++..+|..+ .+++++|++++|.+.. ++...|.++++|++|++++|.++.+ |..|+++++|++|++++|
T Consensus 9 ~~~~~c~~~~l~~ip~~l-~~~l~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n 86 (570)
T 2z63_A 9 NITYQCMELNFYKIPDNL-PFSTKNLDLSFNPLRH-LGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN 86 (570)
T ss_dssp TTEEECCSSCCSSCCSSS-CSSCCEEECCSCCCCE-ECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTC
T ss_pred CcEEEeCCCCccccCCCc-cccccEEEccCCccCc-cChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCC
Confidence 345666777778888754 3679999999999874 4444568999999999999999977 467999999999999999
Q ss_pred ccCC--cccccCCCCCCEEeecCCCCcccCh-hhcCCCCCCEEEccCCCCCCc--cCcccccCCCCCcEEEccCCcccce
Q 003193 291 LVVD--VAIIGDLKKLEILSLKHSSIEQLPR-EIGQLTCLKLLDLSNCSKLKE--IRPNVISNLTRLEELYMGNSFTQWK 365 (840)
Q Consensus 291 ~~~~--~~~i~~L~~L~~L~l~~~~l~~lp~-~i~~L~~L~~L~L~~~~~l~~--~p~~~l~~L~~L~~L~l~~~~~~~~ 365 (840)
.+.. +..++++++|++|++++|+++.+|. .++++++|++|++++ +.+.. +|.. ++++++|++|++++|.+...
T Consensus 87 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~-n~l~~~~lp~~-~~~l~~L~~L~l~~n~l~~~ 164 (570)
T 2z63_A 87 PIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAH-NLIQSFKLPEY-FSNLTNLEHLDLSSNKIQSI 164 (570)
T ss_dssp CCCEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCS-SCCCCCCCCGG-GGGCTTCCEEECTTSCCCEE
T ss_pred cCCccCHhhhcCccccccccccccccccCCCccccccccccEEecCC-CccceecChhh-hcccCCCCEEeCcCCcccee
Confidence 9988 5789999999999999999999886 689999999999999 45655 5665 89999999999999977543
Q ss_pred ecCCCCCCcccccCCCCC----CeEEEecCCCCCCCCcc-cccCcceEEEEEcCc-----cCCCCCccccceEEEeeCC-
Q 003193 366 VEGQSNASLGELKQLSRL----TTLEVHIPDAQVMPQDL-VFVELERFRICIGDV-----WSWSDGYETSKTLKLQLNN- 434 (840)
Q Consensus 366 ~~~~~~~~l~~l~~l~~L----~~L~l~~~~~~~~~~~~-~~~~L~~L~l~~~~~-----~~~~~~~~~l~~L~l~~~~- 434 (840)
.+ ..+..+++| +.|+++.|.+..++... ...+|+.+.+..+.. .........++...+....
T Consensus 165 ~~-------~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~ 237 (570)
T 2z63_A 165 YC-------TDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEF 237 (570)
T ss_dssp CG-------GGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEEC
T ss_pred cH-------HHccchhccchhhhhcccCCCCceecCHHHhccCcceeEecccccccccchhhhhcCccccceeeeccccc
Confidence 22 334444455 78999998887665543 344677777764321 1112223333333332210
Q ss_pred -----CccchhhHHHHHh--cccceeeccc-cccccccccccchhhcccccEEEeecCCCeEEEEeCCCcccccccccee
Q 003193 435 -----STYLGYGMKMLLK--RTEDLHLDEL-AGFKNVVHELDDEEGFARLRHLHVHNGPEILHILNSDGRVGTFPLLESL 506 (840)
Q Consensus 435 -----~~~~~~~~~~~l~--~L~~L~L~~~-~~~~~~~~~l~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L 506 (840)
...++.+....++ .++.+.+.++ ......+..+ ..+++|++|++.++. +.. .......+ +|++|
T Consensus 238 ~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~---~~l~~L~~L~l~~~~-l~~---l~~~~~~~-~L~~L 309 (570)
T 2z63_A 238 RNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLF---NCLTNVSSFSLVSVT-IER---VKDFSYNF-GWQHL 309 (570)
T ss_dssp CCCSSCEECCTTTTGGGGGSEEEEEEEEETTEEESCSTTTT---GGGTTCSEEEEESCE-ECS---CCBCCSCC-CCSEE
T ss_pred cCchhhhhcchhhhccccccchhhhhhhcchhhhhhchhhh---cCcCcccEEEecCcc-chh---hhhhhccC-CccEE
Confidence 0111111111111 2334444444 2222333344 567788888887774 222 12223445 77888
Q ss_pred ecccccccccccccccccCCCCcccCCccEEEEecCCCcccccchhHHhhcccccEEEEecccccceeeccccccccccC
Q 003193 507 FLHNLINLEKVCDGKVRLNEDDKSFSNLRIIKVEGCHRVKHLFPFSLVKNLLQLQKVKVTDCTNLKLIVGKESENSAHKN 586 (840)
Q Consensus 507 ~l~~~~~L~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~ 586 (840)
++.++. +..+ + ...+++|+.|++.++......+ . ..+++|++|++++|.- ......
T Consensus 310 ~l~~n~-~~~l-----~----~~~l~~L~~L~l~~n~~~~~~~-~---~~~~~L~~L~l~~n~l-~~~~~~--------- 365 (570)
T 2z63_A 310 ELVNCK-FGQF-----P----TLKLKSLKRLTFTSNKGGNAFS-E---VDLPSLEFLDLSRNGL-SFKGCC--------- 365 (570)
T ss_dssp EEESCB-CSSC-----C----BCBCSSCCEEEEESCBSCCBCC-C---CBCTTCCEEECCSSCC-BEEEEE---------
T ss_pred eeccCc-cccc-----C----cccccccCEEeCcCCccccccc-c---ccCCCCCEEeCcCCcc-Cccccc---------
Confidence 877753 2222 2 2457778888887765433332 1 5677888888877643 222100
Q ss_pred CccccccccccceeecccCcccccccCCCCCCCccCCCCCcccccCCCCCcccccccccccCCcceEecccccchhhccc
Q 003193 587 GSISGVYFRKLHFLKLQHLPQLTSSGFDLETPTNTQGSNPGIIAEGDPKDFTSLFNERVVFPSLKKLKLSSINVEKIWLN 666 (840)
Q Consensus 587 ~~~~l~~l~~L~~L~l~~c~~L~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~l~~~~~~ 666 (840)
...+..+++|++|++.++. +..++ .....+++|++|++++|.+...+..
T Consensus 366 -~~~~~~~~~L~~L~l~~n~-l~~~~-----------------------------~~~~~l~~L~~L~l~~n~l~~~~~~ 414 (570)
T 2z63_A 366 -SQSDFGTTSLKYLDLSFNG-VITMS-----------------------------SNFLGLEQLEHLDFQHSNLKQMSEF 414 (570)
T ss_dssp -EHHHHTCSCCCEEECCSCS-EEEEE-----------------------------EEEETCTTCCEEECTTSEEESCTTS
T ss_pred -cccccccCccCEEECCCCc-ccccc-----------------------------ccccccCCCCEEEccCCccccccch
Confidence 0123467778888877764 22221 1135689999999999987765432
Q ss_pred CCccccccCCCceEEEecccCCcceeechhhHhhhcccceeeecccccch-hhhccCcccccCccccccccccccccccC
Q 003193 667 SFSAIESWGKNLTKLTVEKCGRLKFLFSSSMVNGLEQLQQLDISHCKSMN-EVINTRVGRDDNMIEMVFPKLVSLQLSHL 745 (840)
Q Consensus 667 ~~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~~l~sL~~L~i~~C~~L~-~i~~~~~~~~~~~~~~~l~sL~~L~i~~c 745 (840)
.. ...+++|+.|++++|. ++..++ ..+.++++|++|++++|.-.. .+ |..+.. +++|+.|++++|
T Consensus 415 ~~---~~~l~~L~~L~l~~n~-l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~---p~~~~~------l~~L~~L~l~~n 480 (570)
T 2z63_A 415 SV---FLSLRNLIYLDISHTH-TRVAFN-GIFNGLSSLEVLKMAGNSFQENFL---PDIFTE------LRNLTFLDLSQC 480 (570)
T ss_dssp CT---TTTCTTCCEEECTTSC-CEECCT-TTTTTCTTCCEEECTTCEEGGGEE---CSCCTT------CTTCCEEECTTS
T ss_pred hh---hhcCCCCCEEeCcCCc-ccccch-hhhhcCCcCcEEECcCCcCccccc---hhhhhc------ccCCCEEECCCC
Confidence 11 2577999999998885 444433 457889999999999987432 23 655544 899999999999
Q ss_pred CcceeecCCCCccCCCcceEEeccCCCccee
Q 003193 746 PKLTRFGIGDSVEFPSLCQLQIACCPNLKIF 776 (840)
Q Consensus 746 ~~L~~l~~~~~~~l~sL~~L~i~~C~~L~~l 776 (840)
. ++.++...+.++++|++|++.+| ++..+
T Consensus 481 ~-l~~~~~~~~~~l~~L~~L~l~~n-~l~~~ 509 (570)
T 2z63_A 481 Q-LEQLSPTAFNSLSSLQVLNMASN-QLKSV 509 (570)
T ss_dssp C-CCEECTTTTTTCTTCCEEECCSS-CCSCC
T ss_pred c-cccCChhhhhcccCCCEEeCCCC-cCCCC
Confidence 5 77775445568899999999998 45444
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=1.1e-30 Score=299.57 Aligned_cols=463 Identities=16% Similarity=0.172 Sum_probs=330.6
Q ss_pred ccchhhhhhccCCCcEEEeccCCcccCCc-cc-CCCcceeEeeccCccccCCCchhhcCCCCCcEEEcCCCCCCCCChh-
Q 003193 199 ADLKEELDKIDEAPTAISIPFRGIYELPE-RL-GFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPSS- 275 (840)
Q Consensus 199 ~~~~~~~~~~~~~l~~L~l~~~~~~~l~~-~~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~- 275 (840)
..+..+|....+.+++|++++|.+..++. .+ .+++|++|++++|.+....| ..|.++++|++|++++|.++.+|..
T Consensus 15 ~~l~~ip~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~-~~~~~l~~L~~L~Ls~n~l~~~~~~~ 93 (549)
T 2z81_A 15 RSFTSIPSGLTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEG-DAFYSLGSLEHLDLSDNHLSSLSSSW 93 (549)
T ss_dssp SCCSSCCSCCCTTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECT-TTTTTCTTCCEEECTTSCCCSCCHHH
T ss_pred CccccccccCCCCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccCh-hhccccccCCEEECCCCccCccCHHH
Confidence 45566676667899999999999977753 33 79999999999999875444 4568999999999999999988765
Q ss_pred hcCCCCCCEEEccCCccCC---cccccCCCCCCEEeecCCC-CcccC-hhhcCCCCCCEEEccCCCCCCccCcccccCCC
Q 003193 276 LGCLINLRTLSLENCLVVD---VAIIGDLKKLEILSLKHSS-IEQLP-REIGQLTCLKLLDLSNCSKLKEIRPNVISNLT 350 (840)
Q Consensus 276 l~~l~~L~~L~L~~~~~~~---~~~i~~L~~L~~L~l~~~~-l~~lp-~~i~~L~~L~~L~L~~~~~l~~~p~~~l~~L~ 350 (840)
++++++|++|++++|.+.. +..++++++|++|++++|. +..+| ..++++++|++|++++| .+....+..+++++
T Consensus 94 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~l~~l~ 172 (549)
T 2z81_A 94 FGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKAL-SLRNYQSQSLKSIR 172 (549)
T ss_dssp HTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEET-TCCEECTTTTTTCS
T ss_pred hccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCC-cccccChhhhhccc
Confidence 9999999999999999875 5789999999999999997 77887 57999999999999995 56554444489999
Q ss_pred CCcEEEccCCcccceecCCCCCCcccccCCCCCCeEEEecCCCCCCC---Cc--ccccCcceEEEEEcCcc--------C
Q 003193 351 RLEELYMGNSFTQWKVEGQSNASLGELKQLSRLTTLEVHIPDAQVMP---QD--LVFVELERFRICIGDVW--------S 417 (840)
Q Consensus 351 ~L~~L~l~~~~~~~~~~~~~~~~l~~l~~l~~L~~L~l~~~~~~~~~---~~--~~~~~L~~L~l~~~~~~--------~ 417 (840)
+|++|++++|....... ..+..+++|+.|++++|.+...+ .. ....+|+.|.+..+... .
T Consensus 173 ~L~~L~l~~n~~~~~~~-------~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~ 245 (549)
T 2z81_A 173 DIHHLTLHLSESAFLLE-------IFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLK 245 (549)
T ss_dssp EEEEEEEECSBSTTHHH-------HHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHG
T ss_pred cCceEecccCcccccch-------hhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHH
Confidence 99999999886532111 12346889999999999877642 11 25678888888754422 1
Q ss_pred CCCCccccceEEEeeCCCccchhh------HHHHHhcccceeecccccccccc-ccccc-hhhcccccEEEeecCCCeEE
Q 003193 418 WSDGYETSKTLKLQLNNSTYLGYG------MKMLLKRTEDLHLDELAGFKNVV-HELDD-EEGFARLRHLHVHNGPEILH 489 (840)
Q Consensus 418 ~~~~~~~l~~L~l~~~~~~~~~~~------~~~~l~~L~~L~L~~~~~~~~~~-~~l~~-~~~l~~L~~L~l~~~~~l~~ 489 (840)
.......++.+.+..+.....+.+ ....+++++.|.+.++....... ..+.. ...+++|+.|+++++. +..
T Consensus 246 ~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~-l~~ 324 (549)
T 2z81_A 246 LLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSK-VFL 324 (549)
T ss_dssp GGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSC-CCC
T ss_pred HhhhhccccccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCc-ccc
Confidence 234556788888877543322110 01124678888887764322110 00000 0346789999999886 332
Q ss_pred EEeCCCcc-ccccccceeecccccccccccccccccCCCCcccCCccEEEEecCCCcccccc-hhHHhhcccccEEEEec
Q 003193 490 ILNSDGRV-GTFPLLESLFLHNLINLEKVCDGKVRLNEDDKSFSNLRIIKVEGCHRVKHLFP-FSLVKNLLQLQKVKVTD 567 (840)
Q Consensus 490 ~~~~~~~~-~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~-~~~~~~l~~L~~L~i~~ 567 (840)
++ ... ..+++|++|+++++.--..++... ...+.+++|+.|++++| .++.+++ ...+..+++|++|++++
T Consensus 325 ip---~~~~~~l~~L~~L~Ls~N~l~~~~~~~~----~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~~~l~~L~~L~Ls~ 396 (549)
T 2z81_A 325 VP---CSFSQHLKSLEFLDLSENLMVEEYLKNS----ACKGAWPSLQTLVLSQN-HLRSMQKTGEILLTLKNLTSLDISR 396 (549)
T ss_dssp CC---HHHHHHCTTCCEEECCSSCCCHHHHHHH----TCTTSSTTCCEEECTTS-CCCCHHHHHHHGGGCTTCCEEECTT
T ss_pred CC---HHHHhcCccccEEEccCCccccccccch----hhhhccccCcEEEccCC-cccccccchhhhhcCCCCCEEECCC
Confidence 21 112 468999999999865332222111 11457899999999997 5666643 13467899999999999
Q ss_pred ccccceeeccccccccccCCccccccccccceeecccCcccccccCCCCCCCccCCCCCcccccCCCCCccccccccccc
Q 003193 568 CTNLKLIVGKESENSAHKNGSISGVYFRKLHFLKLQHLPQLTSSGFDLETPTNTQGSNPGIIAEGDPKDFTSLFNERVVF 647 (840)
Q Consensus 568 c~~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~c~~L~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~l 647 (840)
| .+..++. .+..+++|++|+++++. ++.++... .
T Consensus 397 N-~l~~lp~-------------~~~~~~~L~~L~Ls~N~-l~~l~~~~-------------------------------~ 430 (549)
T 2z81_A 397 N-TFHPMPD-------------SCQWPEKMRFLNLSSTG-IRVVKTCI-------------------------------P 430 (549)
T ss_dssp C-CCCCCCS-------------CCCCCTTCCEEECTTSC-CSCCCTTS-------------------------------C
T ss_pred C-CCccCCh-------------hhcccccccEEECCCCC-cccccchh-------------------------------c
Confidence 8 4555542 34478999999999875 44443321 4
Q ss_pred CCcceEecccccchhhcccCCccccccCCCceEEEecccCCcceeechhhHhhhcccceeeecccccchhhhccCccccc
Q 003193 648 PSLKKLKLSSINVEKIWLNSFSAIESWGKNLTKLTVEKCGRLKFLFSSSMVNGLEQLQQLDISHCKSMNEVINTRVGRDD 727 (840)
Q Consensus 648 ~~L~~L~l~~c~l~~~~~~~~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~~l~sL~~L~i~~C~~L~~i~~~~~~~~~ 727 (840)
++|++|++++|+++.++ ..+++|++|++++| +++.+|. ...+++|+.|++++| .++.+. |+.+..
T Consensus 431 ~~L~~L~Ls~N~l~~~~--------~~l~~L~~L~Ls~N-~l~~ip~---~~~l~~L~~L~Ls~N-~l~~~~--~~~~~~ 495 (549)
T 2z81_A 431 QTLEVLDVSNNNLDSFS--------LFLPRLQELYISRN-KLKTLPD---ASLFPVLLVMKISRN-QLKSVP--DGIFDR 495 (549)
T ss_dssp TTCSEEECCSSCCSCCC--------CCCTTCCEEECCSS-CCSSCCC---GGGCTTCCEEECCSS-CCCCCC--TTGGGG
T ss_pred CCceEEECCCCChhhhc--------ccCChhcEEECCCC-ccCcCCC---cccCccCCEEecCCC-ccCCcC--HHHHhc
Confidence 68999999999887653 35689999999776 7888864 356889999999996 466552 333433
Q ss_pred CccccccccccccccccCC
Q 003193 728 NMIEMVFPKLVSLQLSHLP 746 (840)
Q Consensus 728 ~~~~~~l~sL~~L~i~~c~ 746 (840)
+++|+.|++++++
T Consensus 496 ------l~~L~~L~l~~N~ 508 (549)
T 2z81_A 496 ------LTSLQKIWLHTNP 508 (549)
T ss_dssp ------CTTCCEEECCSSC
T ss_pred ------CcccCEEEecCCC
Confidence 8899999999887
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=3.5e-30 Score=308.93 Aligned_cols=491 Identities=17% Similarity=0.113 Sum_probs=329.9
Q ss_pred cEEEeccCCcccCCcccCCCcceeEeeccCccccCCCchhhcCCCCCcEEEcCCCCC-CCC-ChhhcCCCCCCEEEccCC
Q 003193 213 TAISIPFRGIYELPERLGFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRF-HSL-PSSLGCLINLRTLSLENC 290 (840)
Q Consensus 213 ~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~-~~l-p~~l~~l~~L~~L~L~~~ 290 (840)
+..+.+++++..+|. -.+++++|++++|.+....|.. |.++++|++|++++|.. ..+ |..|+++++|++|+|++|
T Consensus 7 ~~~dcs~~~L~~vP~--lp~~l~~LdLs~N~i~~i~~~~-~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N 83 (844)
T 3j0a_A 7 RIAFYRFCNLTQVPQ--VLNTTERLLLSFNYIRTVTASS-FPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSS 83 (844)
T ss_dssp EEEEESCCCSSCCCS--SCTTCCEEEEESCCCCEECSSS-CSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTC
T ss_pred eEEEccCCCCCCCCC--CCCCcCEEECCCCcCCccChhH-CcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCC
Confidence 467778888899998 5689999999999987555554 59999999999999954 456 788999999999999999
Q ss_pred ccCC--cccccCCCCCCEEeecCCCCcc-cChh--hcCCCCCCEEEccCCCCCCcc-CcccccCCCCCcEEEccCCcccc
Q 003193 291 LVVD--VAIIGDLKKLEILSLKHSSIEQ-LPRE--IGQLTCLKLLDLSNCSKLKEI-RPNVISNLTRLEELYMGNSFTQW 364 (840)
Q Consensus 291 ~~~~--~~~i~~L~~L~~L~l~~~~l~~-lp~~--i~~L~~L~~L~L~~~~~l~~~-p~~~l~~L~~L~~L~l~~~~~~~ 364 (840)
.+.. |..++++++|++|++++|.++. +|.. ++++++|++|++++| .+..+ +...++++++|++|++++|.+..
T Consensus 84 ~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N-~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~ 162 (844)
T 3j0a_A 84 KIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKN-QIRSLYLHPSFGKLNSLKSIDFSSNQIFL 162 (844)
T ss_dssp CCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESC-CCCCCCCCGGGGTCSSCCEEEEESSCCCC
T ss_pred cCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCC-cccccccchhHhhCCCCCEEECCCCcCCe
Confidence 9987 7899999999999999999985 5655 899999999999995 55555 33458999999999999997653
Q ss_pred eecCCCCCCcccccCC--CCCCeEEEecCCCCCCC-Ccc-c------ccCcceEEEEEcCccC----CC---CCccccce
Q 003193 365 KVEGQSNASLGELKQL--SRLTTLEVHIPDAQVMP-QDL-V------FVELERFRICIGDVWS----WS---DGYETSKT 427 (840)
Q Consensus 365 ~~~~~~~~~l~~l~~l--~~L~~L~l~~~~~~~~~-~~~-~------~~~L~~L~l~~~~~~~----~~---~~~~~l~~ 427 (840)
..+ ..+..+ ++|+.|+++.|.+.... ..+ . ...|+.|++..+.... .+ .....+..
T Consensus 163 ~~~-------~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~ 235 (844)
T 3j0a_A 163 VCE-------HELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFS 235 (844)
T ss_dssp CCS-------GGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSE
T ss_pred eCH-------HHcccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccc
Confidence 322 444444 78999999988765422 211 1 2248888876553211 11 11234445
Q ss_pred EEEeeC---------CCccch-hhHHH-HHhcccceeeccccccccccccccchhhcccccEEEeecCCCeEEEEeCCCc
Q 003193 428 LKLQLN---------NSTYLG-YGMKM-LLKRTEDLHLDELAGFKNVVHELDDEEGFARLRHLHVHNGPEILHILNSDGR 496 (840)
Q Consensus 428 L~l~~~---------~~~~~~-~~~~~-~l~~L~~L~L~~~~~~~~~~~~l~~~~~l~~L~~L~l~~~~~l~~~~~~~~~ 496 (840)
+.+..+ ...... ..+.. ..++|+.|+++++......+..+ ..+++|+.|++++|. +..+. ...
T Consensus 236 L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~---~~l~~L~~L~L~~n~-i~~~~--~~~ 309 (844)
T 3j0a_A 236 LILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVF---ETLKDLKVLNLAYNK-INKIA--DEA 309 (844)
T ss_dssp EECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCS---SSCCCCCEEEEESCC-CCEEC--TTT
T ss_pred eecccccccccccccccCCCChhhhhccccCCccEEECCCCcccccChhhh---hcCCCCCEEECCCCc-CCCCC--hHH
Confidence 554411 000111 01111 12578888888887655555555 678889999998886 33332 233
Q ss_pred cccccccceeecccccccccccccccccCCCCcccCCccEEEEecCCCcccccchhHHhhcccccEEEEecccccceeec
Q 003193 497 VGTFPLLESLFLHNLINLEKVCDGKVRLNEDDKSFSNLRIIKVEGCHRVKHLFPFSLVKNLLQLQKVKVTDCTNLKLIVG 576 (840)
Q Consensus 497 ~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~ 576 (840)
...+++|++|+++++ .+..+... ....+++|+.|+++++ .+..+++. .+..+++|++|+++++. +..+
T Consensus 310 ~~~l~~L~~L~Ls~N-~l~~~~~~------~~~~l~~L~~L~L~~N-~i~~~~~~-~~~~l~~L~~L~Ls~N~-l~~i-- 377 (844)
T 3j0a_A 310 FYGLDNLQVLNLSYN-LLGELYSS------NFYGLPKVAYIDLQKN-HIAIIQDQ-TFKFLEKLQTLDLRDNA-LTTI-- 377 (844)
T ss_dssp TTTCSSCCEEEEESC-CCSCCCSC------SCSSCTTCCEEECCSC-CCCCCCSS-CSCSCCCCCEEEEETCC-SCCC--
T ss_pred hcCCCCCCEEECCCC-CCCccCHH------HhcCCCCCCEEECCCC-CCCccChh-hhcCCCCCCEEECCCCC-CCcc--
Confidence 467888899988875 44443222 2456788889988886 56666442 34678888899888864 2222
Q ss_pred cccccccccCCccccccccccceeecccCcccccccCCCCCCCccCCCCCcccccCCCCCcccccccccccCCcceEecc
Q 003193 577 KESENSAHKNGSISGVYFRKLHFLKLQHLPQLTSSGFDLETPTNTQGSNPGIIAEGDPKDFTSLFNERVVFPSLKKLKLS 656 (840)
Q Consensus 577 ~~~~~~~~~~~~~~l~~l~~L~~L~l~~c~~L~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~ 656 (840)
..+++|+.|.+.++. +..++............ .-.+...+. ......+|+|+.|+++
T Consensus 378 ---------------~~~~~L~~L~l~~N~-l~~l~~~~~~l~~L~ls---~N~l~~l~~----~~~~~~l~~L~~L~Ls 434 (844)
T 3j0a_A 378 ---------------HFIPSIPDIFLSGNK-LVTLPKINLTANLIHLS---ENRLENLDI----LYFLLRVPHLQILILN 434 (844)
T ss_dssp ---------------SSCCSCSEEEEESCC-CCCCCCCCTTCCEEECC---SCCCCSSTT----HHHHTTCTTCCEEEEE
T ss_pred ---------------cCCCCcchhccCCCC-cccccccccccceeecc---cCccccCch----hhhhhcCCccceeeCC
Confidence 246777777776653 33333321110000100 000000000 0112368999999999
Q ss_pred cccchhhcccCCccccccCCCceEEEecccCCcceeec----hhhHhhhcccceeeecccccchhhhccCcccccCcccc
Q 003193 657 SINVEKIWLNSFSAIESWGKNLTKLTVEKCGRLKFLFS----SSMVNGLEQLQQLDISHCKSMNEVINTRVGRDDNMIEM 732 (840)
Q Consensus 657 ~c~l~~~~~~~~~~~~~~l~~L~~L~i~~C~~L~~l~~----~~~~~~l~sL~~L~i~~C~~L~~i~~~~~~~~~~~~~~ 732 (840)
+|.++.++..... ..+++|+.|+++++ .++..+. ...+.++++|+.|++++| .++.+. +..+..
T Consensus 435 ~N~l~~~~~~~~~---~~~~~L~~L~Ls~N-~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~--~~~~~~----- 502 (844)
T 3j0a_A 435 QNRFSSCSGDQTP---SENPSLEQLFLGEN-MLQLAWETELCWDVFEGLSHLQVLYLNHN-YLNSLP--PGVFSH----- 502 (844)
T ss_dssp SCCCCCCCSSSSS---CSCTTCCBCEEESC-CCSSSCCSCCCSSCSSCBCCEECCCCCHH-HHTTCC--TTSSSS-----
T ss_pred CCccccccccccc---ccCCccccccCCCC-ccccccccccchhhhcCcccccEEECCCC-cccccC--hhHccc-----
Confidence 9988876544332 35699999999876 4543321 134678899999999996 566662 333333
Q ss_pred ccccccccccccCCcceeecCCCCccCCCcceEEeccCC
Q 003193 733 VFPKLVSLQLSHLPKLTRFGIGDSVEFPSLCQLQIACCP 771 (840)
Q Consensus 733 ~l~sL~~L~i~~c~~L~~l~~~~~~~l~sL~~L~i~~C~ 771 (840)
+++|+.|+++++ +++.++...+ .++|+.|+++++.
T Consensus 503 -l~~L~~L~Ls~N-~l~~l~~~~~--~~~L~~L~Ls~N~ 537 (844)
T 3j0a_A 503 -LTALRGLSLNSN-RLTVLSHNDL--PANLEILDISRNQ 537 (844)
T ss_dssp -CCSCSEEEEESC-CCSSCCCCCC--CSCCCEEEEEEEC
T ss_pred -hhhhheeECCCC-CCCccChhhh--hccccEEECCCCc
Confidence 899999999999 6888886554 2899999999874
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.9e-29 Score=286.92 Aligned_cols=454 Identities=15% Similarity=0.129 Sum_probs=250.7
Q ss_pred cEEEeccCCcccCCcccCCCcceeEeeccCccccCCCchhhcCCCCCcEEEcCCCCCCCC-ChhhcCCCCCCEEEccCCc
Q 003193 213 TAISIPFRGIYELPERLGFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSL-PSSLGCLINLRTLSLENCL 291 (840)
Q Consensus 213 ~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~l-p~~l~~l~~L~~L~L~~~~ 291 (840)
++++++++.+..+|..+. +++++|++++|.+.. ++...|.++++|++|++++|.++.+ |..|+++++|++|++++|.
T Consensus 3 ~~l~ls~n~l~~ip~~~~-~~L~~L~Ls~n~i~~-~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~ 80 (520)
T 2z7x_B 3 FLVDRSKNGLIHVPKDLS-QKTTILNISQNYISE-LWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNK 80 (520)
T ss_dssp CEEECTTSCCSSCCCSCC-TTCSEEECCSSCCCC-CCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSC
T ss_pred ceEecCCCCccccccccc-ccccEEECCCCcccc-cChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCc
Confidence 577888888877776554 778888888777653 4444457788888888888887765 6677788888888888887
Q ss_pred cCC-cccccCCCCCCEEeecCCCCcc--cChhhcCCCCCCEEEccCCCCCCccCcccccCCCCC--cEEEccCCcc--cc
Q 003193 292 VVD-VAIIGDLKKLEILSLKHSSIEQ--LPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRL--EELYMGNSFT--QW 364 (840)
Q Consensus 292 ~~~-~~~i~~L~~L~~L~l~~~~l~~--lp~~i~~L~~L~~L~L~~~~~l~~~p~~~l~~L~~L--~~L~l~~~~~--~~ 364 (840)
++. |.. .+++|++|++++|.++. +|..++++++|++|++++ +.+.. ..++.+++| ++|++++|.+ ..
T Consensus 81 l~~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~-n~l~~---~~~~~l~~L~L~~L~l~~n~l~~~~ 154 (520)
T 2z7x_B 81 LVKISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLST-THLEK---SSVLPIAHLNISKVLLVLGETYGEK 154 (520)
T ss_dssp CCEEECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEE-SSCCG---GGGGGGTTSCEEEEEEEECTTTTSS
T ss_pred eeecCcc--ccCCccEEeccCCccccccchhhhccCCcceEEEecC-cccch---hhccccccceeeEEEeecccccccc
Confidence 777 444 77788888888887775 467778888888888877 34444 225666666 7777777755 21
Q ss_pred eecCCCCCCcccccCCCC-CCeEEEecCCCCCCCCcccccCcceEEEEEcCccCCCCCccccceEEEeeCC----Cccch
Q 003193 365 KVEGQSNASLGELKQLSR-LTTLEVHIPDAQVMPQDLVFVELERFRICIGDVWSWSDGYETSKTLKLQLNN----STYLG 439 (840)
Q Consensus 365 ~~~~~~~~~l~~l~~l~~-L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~l~~~~----~~~~~ 439 (840)
. ....+..+.. ...++++.+......... ....++.++.++++.+. .....
T Consensus 155 ~-------~~~~l~~l~~~~l~l~l~~n~~~~~~~~~-----------------~~~~l~~L~~L~l~~n~~~~~~~~~~ 210 (520)
T 2z7x_B 155 E-------DPEGLQDFNTESLHIVFPTNKEFHFILDV-----------------SVKTVANLELSNIKCVLEDNKCSYFL 210 (520)
T ss_dssp C-------CTTTTTTCCEEEEEEECCSSSCCCCCCCC-----------------CCTTCSEEEECCEEECCSTTTTHHHH
T ss_pred c-------ccccccccccceEEEEeccCcchhhhhhh-----------------hhhcccceeeccccccccccccceee
Confidence 1 1122333221 112233333322111111 11122333333333322 00000
Q ss_pred hhHH--HHHhcccceeeccccccccccccccchhhcccccEEEeecCCCeEEEEeCCCcc-----ccccccceeeccccc
Q 003193 440 YGMK--MLLKRTEDLHLDELAGFKNVVHELDDEEGFARLRHLHVHNGPEILHILNSDGRV-----GTFPLLESLFLHNLI 512 (840)
Q Consensus 440 ~~~~--~~l~~L~~L~L~~~~~~~~~~~~l~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~-----~~~~~L~~L~l~~~~ 512 (840)
..+. ..+++|+.|++.++......+..+.+....++|++|++++|.-...+ +... ..+++|+.+++.++.
T Consensus 211 ~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~---p~~~~~~~~~~l~~L~~l~l~~n~ 287 (520)
T 2z7x_B 211 SILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQL---DFRDFDYSGTSLKALSIHQVVSDV 287 (520)
T ss_dssp HHHHGGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCC---CCCCCCCCSCCCCEEEEEEEEECC
T ss_pred cchhhhccccchhhccccccccCHHHHHHHHHHhhhCcccEEEeecccccCcc---ccchhhcccccCceeEeccccccc
Confidence 0000 01334555555444322211111100011235555555555311011 1111 334444444444422
Q ss_pred ccccccccccccCCCCccc---CCccEEEEecCCCcccccchhHHhhcccccEEEEecccccceeeccccccccccCCcc
Q 003193 513 NLEKVCDGKVRLNEDDKSF---SNLRIIKVEGCHRVKHLFPFSLVKNLLQLQKVKVTDCTNLKLIVGKESENSAHKNGSI 589 (840)
Q Consensus 513 ~L~~~~~~~~~~~~~~~~~---~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~ 589 (840)
- .++... ...+ ++|+.|+++++. +...+ ....+++|++|++++|.--..++ .
T Consensus 288 ~--~~p~~~------~~~~~~~~~L~~L~l~~n~-l~~~~---~~~~l~~L~~L~Ls~n~l~~~~~-------------~ 342 (520)
T 2z7x_B 288 F--GFPQSY------IYEIFSNMNIKNFTVSGTR-MVHML---CPSKISPFLHLDFSNNLLTDTVF-------------E 342 (520)
T ss_dssp C--CSCTHH------HHHHHHTCCCSEEEEESSC-CCCCC---CCSSCCCCCEEECCSSCCCTTTT-------------T
T ss_pred e--ecchhh------hhcccccCceeEEEcCCCc-ccccc---chhhCCcccEEEeECCccChhhh-------------h
Confidence 1 111000 0011 346666665543 22221 11345566666666553222111 1
Q ss_pred ccccccccceeecccCcccccccCCCCCCCccCCCCCcccccCCCCCcccccccccccCCcceEecccccchh-hcccCC
Q 003193 590 SGVYFRKLHFLKLQHLPQLTSSGFDLETPTNTQGSNPGIIAEGDPKDFTSLFNERVVFPSLKKLKLSSINVEK-IWLNSF 668 (840)
Q Consensus 590 ~l~~l~~L~~L~l~~c~~L~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~l~~-~~~~~~ 668 (840)
.+..+++|++|++.++.- ..+ ..++..+..+++|++|++++|.++. ++.+.+
T Consensus 343 ~~~~l~~L~~L~L~~N~l-~~l--------------------------~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~ 395 (520)
T 2z7x_B 343 NCGHLTELETLILQMNQL-KEL--------------------------SKIAEMTTQMKSLQQLDISQNSVSYDEKKGDC 395 (520)
T ss_dssp TCCCCSSCCEEECCSSCC-CBH--------------------------HHHHHHHTTCTTCCEEECCSSCCBCCGGGCSC
T ss_pred hhccCCCCCEEEccCCcc-Ccc--------------------------ccchHHHhhCCCCCEEECCCCcCCcccccchh
Confidence 233556666666665531 111 0112234568899999999998877 765544
Q ss_pred ccccccCCCceEEEecccCCcceeechhhHhhh-cccceeeecccccchhhhccCcccccCccccccccccccccccCCc
Q 003193 669 SAIESWGKNLTKLTVEKCGRLKFLFSSSMVNGL-EQLQQLDISHCKSMNEVINTRVGRDDNMIEMVFPKLVSLQLSHLPK 747 (840)
Q Consensus 669 ~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~~l-~sL~~L~i~~C~~L~~i~~~~~~~~~~~~~~~l~sL~~L~i~~c~~ 747 (840)
..+++|++|++++|.--...| ..+ ++|+.|++++| .++.+ |.++.. +++|+.|++++| +
T Consensus 396 ----~~l~~L~~L~Ls~N~l~~~~~-----~~l~~~L~~L~Ls~N-~l~~i---p~~~~~------l~~L~~L~L~~N-~ 455 (520)
T 2z7x_B 396 ----SWTKSLLSLNMSSNILTDTIF-----RCLPPRIKVLDLHSN-KIKSI---PKQVVK------LEALQELNVASN-Q 455 (520)
T ss_dssp ----CCCTTCCEEECCSSCCCGGGG-----GSCCTTCCEEECCSS-CCCCC---CGGGGG------CTTCCEEECCSS-C
T ss_pred ----ccCccCCEEECcCCCCCcchh-----hhhcccCCEEECCCC-ccccc---chhhhc------CCCCCEEECCCC-c
Confidence 456899999998875323222 223 68999999996 46666 666544 899999999998 5
Q ss_pred ceeecCCCCccCCCcceEEeccCCCc
Q 003193 748 LTRFGIGDSVEFPSLCQLQIACCPNL 773 (840)
Q Consensus 748 L~~l~~~~~~~l~sL~~L~i~~C~~L 773 (840)
++.+|...+.++++|++|++.++|--
T Consensus 456 l~~l~~~~~~~l~~L~~L~l~~N~~~ 481 (520)
T 2z7x_B 456 LKSVPDGIFDRLTSLQKIWLHTNPWD 481 (520)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred CCccCHHHhccCCcccEEECcCCCCc
Confidence 88888765567899999999998743
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} | Back alignment and structure |
|---|
Probab=99.97 E-value=7.6e-30 Score=295.64 Aligned_cols=361 Identities=14% Similarity=0.139 Sum_probs=224.0
Q ss_pred CCchhhcCCCCCcEEEcCCCCCCC------------------CChhhc--CCCCCCEEEccCCccCC--cccccCCCCCC
Q 003193 248 IPDPFFEGMTELRVLDLTGFRFHS------------------LPSSLG--CLINLRTLSLENCLVVD--VAIIGDLKKLE 305 (840)
Q Consensus 248 ~~~~~~~~l~~Lr~L~l~~~~~~~------------------lp~~l~--~l~~L~~L~L~~~~~~~--~~~i~~L~~L~ 305 (840)
+|.. ++++++|++|++++|.++. +|+.++ ++++|++|++++|.+.. |..++++++|+
T Consensus 198 ip~~-l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~ 276 (636)
T 4eco_A 198 VSKA-VMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQ 276 (636)
T ss_dssp ECGG-GGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCC
T ss_pred CCHH-HhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCC
Confidence 5555 4788899999999998887 888888 89999999999888766 78888999999
Q ss_pred EEeecCCC-Cc--ccChhhcCC------CCCCEEEccCCCCCCccCc-ccccCCCCCcEEEccCCcccceecCCCCCCcc
Q 003193 306 ILSLKHSS-IE--QLPREIGQL------TCLKLLDLSNCSKLKEIRP-NVISNLTRLEELYMGNSFTQWKVEGQSNASLG 375 (840)
Q Consensus 306 ~L~l~~~~-l~--~lp~~i~~L------~~L~~L~L~~~~~l~~~p~-~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~l~ 375 (840)
+|++++|+ ++ .+|..++++ ++|++|++++ +.+..+|. +.++++++|++|++++|.+.+.+ .
T Consensus 277 ~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~-n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~i--------p 347 (636)
T 4eco_A 277 LINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGY-NNLKTFPVETSLQKMKKLGMLECLYNQLEGKL--------P 347 (636)
T ss_dssp EEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCS-SCCSSCCCHHHHTTCTTCCEEECCSCCCEEEC--------C
T ss_pred EEECcCCCCCccccchHHHHhhhccccCCCCCEEECCC-CcCCccCchhhhccCCCCCEEeCcCCcCccch--------h
Confidence 99999987 87 488888876 8999999988 46668887 13788899999999888765322 1
Q ss_pred cccCCCCCCeEEEecCCCCCCCCcc-cccCcceEEEEEcCccCCCCCccccceEEEeeCCCccchhhHHHH-Hhccccee
Q 003193 376 ELKQLSRLTTLEVHIPDAQVMPQDL-VFVELERFRICIGDVWSWSDGYETSKTLKLQLNNSTYLGYGMKML-LKRTEDLH 453 (840)
Q Consensus 376 ~l~~l~~L~~L~l~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~-l~~L~~L~ 453 (840)
.+..+++|+.|++++|.+..+|..+ .+++ +|+.|+++.+....+|.++... +++|+.|+
T Consensus 348 ~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~-------------------~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~ 408 (636)
T 4eco_A 348 AFGSEIKLASLNLAYNQITEIPANFCGFTE-------------------QVENLSFAHNKLKYIPNIFDAKSVSVMSAID 408 (636)
T ss_dssp CCEEEEEESEEECCSSEEEECCTTSEEECT-------------------TCCEEECCSSCCSSCCSCCCTTCSSCEEEEE
T ss_pred hhCCCCCCCEEECCCCccccccHhhhhhcc-------------------cCcEEEccCCcCcccchhhhhcccCccCEEE
Confidence 4566678888888887766555443 3333 0444444444444444433221 23677788
Q ss_pred eccccccccccccccch----hhcccccEEEeecCCCeEEEEeCCCc-cccccccceeecccccccccccccccccC-CC
Q 003193 454 LDELAGFKNVVHELDDE----EGFARLRHLHVHNGPEILHILNSDGR-VGTFPLLESLFLHNLINLEKVCDGKVRLN-ED 527 (840)
Q Consensus 454 L~~~~~~~~~~~~l~~~----~~l~~L~~L~l~~~~~l~~~~~~~~~-~~~~~~L~~L~l~~~~~L~~~~~~~~~~~-~~ 527 (840)
+++|......|..+.+. -.+++|++|++++|.- ..+ ... ...+++|++|+++++ .+..++...+... ..
T Consensus 409 Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l-~~l---p~~~~~~l~~L~~L~Ls~N-~l~~i~~~~~~~~~~~ 483 (636)
T 4eco_A 409 FSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQI-SKF---PKELFSTGSPLSSINLMGN-MLTEIPKNSLKDENEN 483 (636)
T ss_dssp CCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCC-CSC---CTHHHHTTCCCSEEECCSS-CCSBCCSSSSEETTEE
T ss_pred CcCCcCCCcchhhhcccccccccCCCCCEEECcCCcc-CcC---CHHHHccCCCCCEEECCCC-CCCCcCHHHhcccccc
Confidence 87776665555544200 0456788888887752 211 111 134677888888774 3444443222100 00
Q ss_pred CcccCCccEEEEecCCCcccccchhHHhhcccccEEEEecccccceeeccccccccccCCccccccccccceeecccCcc
Q 003193 528 DKSFSNLRIIKVEGCHRVKHLFPFSLVKNLLQLQKVKVTDCTNLKLIVGKESENSAHKNGSISGVYFRKLHFLKLQHLPQ 607 (840)
Q Consensus 528 ~~~~~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~c~~ 607 (840)
...+++|+.|+++++ .++.+|.......+++|++|++++|.- ..++. .+..+++|+.|++++++.
T Consensus 484 ~~~l~~L~~L~Ls~N-~l~~lp~~~~~~~l~~L~~L~Ls~N~l-~~ip~-------------~~~~l~~L~~L~Ls~N~~ 548 (636)
T 4eco_A 484 FKNTYLLTSIDLRFN-KLTKLSDDFRATTLPYLVGIDLSYNSF-SKFPT-------------QPLNSSTLKGFGIRNQRD 548 (636)
T ss_dssp CTTGGGCCEEECCSS-CCCBCCGGGSTTTCTTCCEEECCSSCC-SSCCC-------------GGGGCSSCCEEECCSCBC
T ss_pred ccccCCccEEECcCC-cCCccChhhhhccCCCcCEEECCCCCC-CCcCh-------------hhhcCCCCCEEECCCCcc
Confidence 112237777887775 455664321113677777777777643 22332 344677777777765442
Q ss_pred cccccCCCCCCCccCCCCCcccccCCCCCcccccccccccCCcceEecccccchhhcccCCccccccCCCceEEEecccC
Q 003193 608 LTSSGFDLETPTNTQGSNPGIIAEGDPKDFTSLFNERVVFPSLKKLKLSSINVEKIWLNSFSAIESWGKNLTKLTVEKCG 687 (840)
Q Consensus 608 L~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~l~~~~~~~~~~~~~~l~~L~~L~i~~C~ 687 (840)
+..= .-....+..+..+++|++|+|++|.+..+|... .++|+.|++++|+
T Consensus 549 ls~N-----------------------~l~~~~p~~l~~l~~L~~L~Ls~N~l~~ip~~~-------~~~L~~L~Ls~N~ 598 (636)
T 4eco_A 549 AQGN-----------------------RTLREWPEGITLCPSLTQLQIGSNDIRKVNEKI-------TPNISVLDIKDNP 598 (636)
T ss_dssp TTCC-----------------------BCCCCCCTTGGGCSSCCEEECCSSCCCBCCSCC-------CTTCCEEECCSCT
T ss_pred cccC-----------------------cccccChHHHhcCCCCCEEECCCCcCCccCHhH-------hCcCCEEECcCCC
Confidence 1110 000111222345677777777777666655431 1667777776653
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.96 E-value=3.7e-29 Score=294.00 Aligned_cols=401 Identities=14% Similarity=0.155 Sum_probs=252.9
Q ss_pred CCCcEEEeccCCc-ccCCccc-CCCcceeEee-ccCccccC---------------------------------------
Q 003193 210 EAPTAISIPFRGI-YELPERL-GFLKLKLFLF-FTENLSLQ--------------------------------------- 247 (840)
Q Consensus 210 ~~l~~L~l~~~~~-~~l~~~~-~~~~L~~L~l-~~~~~~~~--------------------------------------- 247 (840)
.+++.|+++++++ +.+|+.+ .+++|++|++ ++|.+.+.
T Consensus 323 ~~V~~L~Ls~~~L~G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~ 402 (876)
T 4ecn_A 323 GRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSD 402 (876)
T ss_dssp SCEEEEECTTTCCEEEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCH
T ss_pred CCEEEEECccCCCCCcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhH
Confidence 5788899999988 4677666 7999999999 55543222
Q ss_pred -------------------------------------CCchhhcCCCCCcEEEcCCCCCCC------------------C
Q 003193 248 -------------------------------------IPDPFFEGMTELRVLDLTGFRFHS------------------L 272 (840)
Q Consensus 248 -------------------------------------~~~~~~~~l~~Lr~L~l~~~~~~~------------------l 272 (840)
+|.. +.++++|++|++++|.++. +
T Consensus 403 l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~IP~~-l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~i 481 (876)
T 4ecn_A 403 LLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKA-IQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYE 481 (876)
T ss_dssp HHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECGG-GGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHT
T ss_pred HHHHHhhhCccccccccccccchhhceeccccCcccchhHH-HhcCCCCCEEECcCCcCCCCcccccccccccccccccC
Confidence 5554 4778888888888888887 8
Q ss_pred Chhhc--CCCCCCEEEccCCccCC--cccccCCCCCCEEeecCCC-Ccc--cChhhcCCC-------CCCEEEccCCCCC
Q 003193 273 PSSLG--CLINLRTLSLENCLVVD--VAIIGDLKKLEILSLKHSS-IEQ--LPREIGQLT-------CLKLLDLSNCSKL 338 (840)
Q Consensus 273 p~~l~--~l~~L~~L~L~~~~~~~--~~~i~~L~~L~~L~l~~~~-l~~--lp~~i~~L~-------~L~~L~L~~~~~l 338 (840)
|+.++ ++++|++|+|++|.+.. |..++++++|++|++++|+ ++. +|..+++++ +|++|++++ +.+
T Consensus 482 P~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~-N~L 560 (876)
T 4ecn_A 482 NEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGY-NNL 560 (876)
T ss_dssp TSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCS-SCC
T ss_pred ChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeC-CcC
Confidence 88877 88888888888887665 7788888888888888887 774 787777666 888888888 466
Q ss_pred CccCc-ccccCCCCCcEEEccCCcccceecCCCCCCcccccCCCCCCeEEEecCCCCCCCCcc-cccC-cceEEEEEcCc
Q 003193 339 KEIRP-NVISNLTRLEELYMGNSFTQWKVEGQSNASLGELKQLSRLTTLEVHIPDAQVMPQDL-VFVE-LERFRICIGDV 415 (840)
Q Consensus 339 ~~~p~-~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~l~~L~~L~l~~~~~~~~~~~~-~~~~-L~~L~l~~~~~ 415 (840)
..+|. ..++++++|++|++++|.+. . +..+..+++|+.|++++|.+..+|..+ .+++ |+.|+
T Consensus 561 ~~ip~~~~l~~L~~L~~L~Ls~N~l~-~--------lp~~~~L~~L~~L~Ls~N~l~~lp~~l~~l~~~L~~L~------ 625 (876)
T 4ecn_A 561 EEFPASASLQKMVKLGLLDCVHNKVR-H--------LEAFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLG------ 625 (876)
T ss_dssp CBCCCHHHHTTCTTCCEEECTTSCCC-B--------CCCCCTTSEESEEECCSSCCSCCCTTSCEECTTCCEEE------
T ss_pred CccCChhhhhcCCCCCEEECCCCCcc-c--------chhhcCCCcceEEECcCCccccchHHHhhccccCCEEE------
Confidence 68877 23788888888888888654 1 125677788888888888777666543 3344 44444
Q ss_pred cCCCCCccccceEEEeeCCCccchhhHHHH-Hhcccceeeccccccccccccccchh--hcccccEEEeecCCCeEEEEe
Q 003193 416 WSWSDGYETSKTLKLQLNNSTYLGYGMKML-LKRTEDLHLDELAGFKNVVHELDDEE--GFARLRHLHVHNGPEILHILN 492 (840)
Q Consensus 416 ~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~-l~~L~~L~L~~~~~~~~~~~~l~~~~--~l~~L~~L~l~~~~~l~~~~~ 492 (840)
++.+....+|.++... .++|+.|++++|.....++....... .+++|+.|++++|.- ..+
T Consensus 626 --------------Ls~N~L~~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L-~~l-- 688 (876)
T 4ecn_A 626 --------------FSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEI-QKF-- 688 (876)
T ss_dssp --------------CCSSCCCSCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCC-CSC--
T ss_pred --------------CcCCCCCcCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcC-Ccc--
Confidence 4444333344332210 13477777777765443321110002 234788888887752 211
Q ss_pred CCCcc-ccccccceeecccccccccccccccccC-CCCcccCCccEEEEecCCCcccccchhHHhhcccccEEEEecccc
Q 003193 493 SDGRV-GTFPLLESLFLHNLINLEKVCDGKVRLN-EDDKSFSNLRIIKVEGCHRVKHLFPFSLVKNLLQLQKVKVTDCTN 570 (840)
Q Consensus 493 ~~~~~-~~~~~L~~L~l~~~~~L~~~~~~~~~~~-~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~i~~c~~ 570 (840)
+... ..+++|+.|+++++ .+..++...+... .....+++|+.|++++| +++.+|.......+++|+.|++++|.
T Consensus 689 -p~~~~~~l~~L~~L~Ls~N-~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N-~L~~lp~~l~~~~l~~L~~L~Ls~N~- 764 (876)
T 4ecn_A 689 -PTELFATGSPISTIILSNN-LMTSIPENSLKPKDGNYKNTYLLTTIDLRFN-KLTSLSDDFRATTLPYLSNMDVSYNC- 764 (876)
T ss_dssp -CHHHHHTTCCCSEEECCSC-CCSCCCTTSSSCTTSCCTTGGGCCEEECCSS-CCCCCCGGGSTTTCTTCCEEECCSSC-
T ss_pred -CHHHHccCCCCCEEECCCC-cCCccChHHhccccccccccCCccEEECCCC-CCccchHHhhhccCCCcCEEEeCCCC-
Confidence 1111 35677888888774 4555543322100 00123447888888876 56666532111377888888888764
Q ss_pred cceeeccccccccccCCccccccccccceeecccCcccccccCCCCCCCccCCCCCcccccCCCCCcccccccccccCCc
Q 003193 571 LKLIVGKESENSAHKNGSISGVYFRKLHFLKLQHLPQLTSSGFDLETPTNTQGSNPGIIAEGDPKDFTSLFNERVVFPSL 650 (840)
Q Consensus 571 l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~c~~L~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~l~~L 650 (840)
+..++. .+..+++|+.|++++++.+.. +.-....+..+..+++|
T Consensus 765 L~~lp~-------------~l~~L~~L~~L~Ls~N~~ls~-----------------------N~l~~~ip~~l~~L~~L 808 (876)
T 4ecn_A 765 FSSFPT-------------QPLNSSQLKAFGIRHQRDAEG-----------------------NRILRQWPTGITTCPSL 808 (876)
T ss_dssp CSSCCC-------------GGGGCTTCCEEECCCCBCTTC-----------------------CBCCCCCCTTGGGCSSC
T ss_pred CCccch-------------hhhcCCCCCEEECCCCCCccc-----------------------ccccccChHHHhcCCCC
Confidence 333332 344778888888877552211 00001122334567788
Q ss_pred ceEecccccchhhcccCCccccccCCCceEEEecccCCccee
Q 003193 651 KKLKLSSINVEKIWLNSFSAIESWGKNLTKLTVEKCGRLKFL 692 (840)
Q Consensus 651 ~~L~l~~c~l~~~~~~~~~~~~~~l~~L~~L~i~~C~~L~~l 692 (840)
+.|+|++|.+..+|.... ++|+.|+|++|+ +..+
T Consensus 809 ~~L~Ls~N~L~~Ip~~l~-------~~L~~LdLs~N~-l~~i 842 (876)
T 4ecn_A 809 IQLQIGSNDIRKVDEKLT-------PQLYILDIADNP-NISI 842 (876)
T ss_dssp CEEECCSSCCCBCCSCCC-------SSSCEEECCSCT-TCEE
T ss_pred CEEECCCCCCCccCHhhc-------CCCCEEECCCCC-CCcc
Confidence 888888887766655421 678888887765 4444
|
| >4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=7.8e-28 Score=281.46 Aligned_cols=518 Identities=18% Similarity=0.173 Sum_probs=315.1
Q ss_pred cCccchhhhhhccCCCcEEEeccCCcccCCcc-c-CCCcceeEeeccCccccCCCchhhcCCCCCcEEEcCCCCCCCCCh
Q 003193 197 NVADLKEELDKIDEAPTAISIPFRGIYELPER-L-GFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPS 274 (840)
Q Consensus 197 ~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~~~-~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~ 274 (840)
.+..+..+|...+..+++|++++|.+..++.. + ++++|++|++++|.+. .+++..|.++++|++|+|++|+++.+|.
T Consensus 39 ~~~~l~~vP~~lp~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~-~i~~~~f~~L~~L~~L~Ls~N~l~~l~~ 117 (635)
T 4g8a_A 39 MELNFYKIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGNPIQSLAL 117 (635)
T ss_dssp TTSCCSSCCSSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCC-EECTTTTTTCTTCCEEECTTCCCCEECG
T ss_pred CCCCcCccCCCCCcCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCC-CcChhHhcCCCCCCEEEccCCcCCCCCH
Confidence 44567777877888899999999999888753 3 7899999999988876 4666667889999999999999988875
Q ss_pred -hhcCCCCCCEEEccCCccCC--cccccCCCCCCEEeecCCCCcc--cChhhcCCCCCCEEEccCCCCCCccCcccccCC
Q 003193 275 -SLGCLINLRTLSLENCLVVD--VAIIGDLKKLEILSLKHSSIEQ--LPREIGQLTCLKLLDLSNCSKLKEIRPNVISNL 349 (840)
Q Consensus 275 -~l~~l~~L~~L~L~~~~~~~--~~~i~~L~~L~~L~l~~~~l~~--lp~~i~~L~~L~~L~L~~~~~l~~~p~~~l~~L 349 (840)
.|.++++|++|++++|.++. +..++++++|++|++++|.++. +|..++.+++|++|++++ +.+..+++..+..+
T Consensus 118 ~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~-N~l~~~~~~~l~~L 196 (635)
T 4g8a_A 118 GAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSS-NKIQSIYCTDLRVL 196 (635)
T ss_dssp GGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCS-SCCCEECGGGGHHH
T ss_pred HHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccC-ccccccccccccch
Confidence 57889999999999998888 3468899999999999998874 577888899999999988 57777766556555
Q ss_pred CCCc----EEEccCCcccceecCCCCCCcccccCCCCCCeEEEecCCCCC-CCCc-c-cccCcceEEEEEcCcc------
Q 003193 350 TRLE----ELYMGNSFTQWKVEGQSNASLGELKQLSRLTTLEVHIPDAQV-MPQD-L-VFVELERFRICIGDVW------ 416 (840)
Q Consensus 350 ~~L~----~L~l~~~~~~~~~~~~~~~~l~~l~~l~~L~~L~l~~~~~~~-~~~~-~-~~~~L~~L~l~~~~~~------ 416 (840)
.+++ .++++.|.+....+ .......+..+++..+.... .... + .+..++...+..+...
T Consensus 197 ~~l~~~~~~~~ls~n~l~~i~~--------~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~ 268 (635)
T 4g8a_A 197 HQMPLLNLSLDLSLNPMNFIQP--------GAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLE 268 (635)
T ss_dssp HTCTTCCCEEECTTCCCCEECT--------TTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCS
T ss_pred hhhhhhhhhhhcccCcccccCc--------ccccchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccc
Confidence 5443 56666665543221 11111223445554432210 0000 0 2333333333222111
Q ss_pred ----CCCCCccccceEEEeeCCCccc---hhhHHHHHhcccceeeccccccccccccccchhhcccccEEEeecCCCeEE
Q 003193 417 ----SWSDGYETSKTLKLQLNNSTYL---GYGMKMLLKRTEDLHLDELAGFKNVVHELDDEEGFARLRHLHVHNGPEILH 489 (840)
Q Consensus 417 ----~~~~~~~~l~~L~l~~~~~~~~---~~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~~~~l~~L~~L~l~~~~~l~~ 489 (840)
........+....+........ .........+++.+.+.++...... .+ ....+|+.|++.++.
T Consensus 269 ~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~--~~---~~~~~L~~L~l~~~~---- 339 (635)
T 4g8a_A 269 KFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVK--DF---SYNFGWQHLELVNCK---- 339 (635)
T ss_dssp CCCTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEECG--GG---GSCCCCSEEEEESCE----
T ss_pred cccccccccccchhhhhhhhhhhcccccchhhhhhhhccccccccccccccccc--cc---ccchhhhhhhccccc----
Confidence 0111222233333322111100 0001112345556655554432211 11 345667777777664
Q ss_pred EEeCCCccccccccceeecccccccccccccccccCCCCcccCCccEEEEecCCCcccccchhHHhhcccccEEEEeccc
Q 003193 490 ILNSDGRVGTFPLLESLFLHNLINLEKVCDGKVRLNEDDKSFSNLRIIKVEGCHRVKHLFPFSLVKNLLQLQKVKVTDCT 569 (840)
Q Consensus 490 ~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~i~~c~ 569 (840)
+. ......++.|+.+.+.+... ... . ....+++|+.|++++..--...........+.+|+.+++..+.
T Consensus 340 ~~--~~~~~~l~~L~~l~l~~n~~-~~~----~----~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~ 408 (635)
T 4g8a_A 340 FG--QFPTLKLKSLKRLTFTSNKG-GNA----F----SEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNG 408 (635)
T ss_dssp ES--SCCCCBCTTCCEEEEESCCS-CCB----C----CCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCS
T ss_pred cc--CcCcccchhhhhcccccccC-CCC----c----ccccccccccchhhccccccccccccchhhhhhhhhhhccccc
Confidence 11 11123556666666665321 111 1 1345677888887764322111111233556778888777654
Q ss_pred ccceeeccccccccccCCccccccccccceeecccCcccccccCCCCCCCccCCCCCcccccCCCCCcccccccccccCC
Q 003193 570 NLKLIVGKESENSAHKNGSISGVYFRKLHFLKLQHLPQLTSSGFDLETPTNTQGSNPGIIAEGDPKDFTSLFNERVVFPS 649 (840)
Q Consensus 570 ~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~c~~L~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~l~~ 649 (840)
..... .....+++|+.+.+..+......+.. ......++..+....+.-..........+++
T Consensus 409 ~~~~~--------------~~~~~l~~L~~l~l~~~~~~~~~~~~----~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~ 470 (635)
T 4g8a_A 409 VITMS--------------SNFLGLEQLEHLDFQHSNLKQMSEFS----VFLSLRNLIYLDISHTHTRVAFNGIFNGLSS 470 (635)
T ss_dssp EEEEC--------------SCCTTCTTCCEEECTTSEEESTTSSC----TTTTCTTCCEEECTTSCCEECCTTTTTTCTT
T ss_pred ccccc--------------ccccccccccchhhhhcccccccccc----ccccccccccccccccccccccccccccchh
Confidence 32211 12336777888877766544433221 1223334444444433333333344567899
Q ss_pred cceEeccccc-chhhcccCCccccccCCCceEEEecccCCcceeechhhHhhhcccceeeecccccchhhhccCcccccC
Q 003193 650 LKKLKLSSIN-VEKIWLNSFSAIESWGKNLTKLTVEKCGRLKFLFSSSMVNGLEQLQQLDISHCKSMNEVINTRVGRDDN 728 (840)
Q Consensus 650 L~~L~l~~c~-l~~~~~~~~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~~l~sL~~L~i~~C~~L~~i~~~~~~~~~~ 728 (840)
|+.|++++|. ...+..+.+ ..+++|+.|++++| +++.+++ ..+.++++|++|+++++ +++.+. +..+..
T Consensus 471 L~~L~Ls~N~~~~~~~~~~~----~~l~~L~~L~Ls~N-~L~~l~~-~~f~~l~~L~~L~Ls~N-~l~~l~--~~~~~~- 540 (635)
T 4g8a_A 471 LEVLKMAGNSFQENFLPDIF----TELRNLTFLDLSQC-QLEQLSP-TAFNSLSSLQVLNMSHN-NFFSLD--TFPYKC- 540 (635)
T ss_dssp CCEEECTTCEEGGGEECSCC----TTCTTCCEEECTTS-CCCEECT-TTTTTCTTCCEEECTTS-CCCBCC--CGGGTT-
T ss_pred hhhhhhhhcccccccCchhh----hhccccCEEECCCC-ccCCcCh-HHHcCCCCCCEEECCCC-cCCCCC--hhHHhC-
Confidence 9999999994 444443333 57799999999887 7888855 45889999999999995 566662 233333
Q ss_pred ccccccccccccccccCCcceeecCCCCccC-CCcceEEeccCCCcceeeccccc
Q 003193 729 MIEMVFPKLVSLQLSHLPKLTRFGIGDSVEF-PSLCQLQIACCPNLKIFICSCTE 782 (840)
Q Consensus 729 ~~~~~l~sL~~L~i~~c~~L~~l~~~~~~~l-~sL~~L~i~~C~~L~~l~~~~~~ 782 (840)
+++|+.|+++++ +++.++...+.++ ++|+.|++.+.|-- |+|.-
T Consensus 541 -----l~~L~~L~Ls~N-~l~~~~~~~l~~l~~~L~~L~L~~Np~~----C~C~~ 585 (635)
T 4g8a_A 541 -----LNSLQVLDYSLN-HIMTSKKQELQHFPSSLAFLNLTQNDFA----CTCEH 585 (635)
T ss_dssp -----CTTCCEEECTTS-CCCBCCSSCTTCCCTTCCEEECTTCCBC----CSGGG
T ss_pred -----CCCCCEEECCCC-cCCCCCHHHHHhhhCcCCEEEeeCCCCc----ccCCc
Confidence 899999999998 5777776665566 68999999988743 66653
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} | Back alignment and structure |
|---|
Probab=99.96 E-value=4.6e-29 Score=289.05 Aligned_cols=447 Identities=14% Similarity=0.108 Sum_probs=263.9
Q ss_pred CcceeEeeccCccccCCCchhhcCCCCCcEEEcCCCCCC-------------CCChhh---------------------c
Q 003193 232 LKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFH-------------SLPSSL---------------------G 277 (840)
Q Consensus 232 ~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~-------------~lp~~l---------------------~ 277 (840)
.+++.|++.++.+.+.+|+.+ +++++|++|++++|.+. .+|... +
T Consensus 81 ~~V~~L~L~~~~l~g~lp~~l-~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~ 159 (636)
T 4eco_A 81 GRVTGLSLEGFGASGRVPDAI-GQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFS 159 (636)
T ss_dssp CCEEEEECTTSCCEEEECGGG-GGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSC
T ss_pred CCEEEEEecCcccCCcCChHH-hcCccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHH
Confidence 578999999999999999766 89999999999999651 111110 0
Q ss_pred -------------------CCCCCCEEEcc--CCccCC-cccccCCCCCCEEeecCCCCcc------------------c
Q 003193 278 -------------------CLINLRTLSLE--NCLVVD-VAIIGDLKKLEILSLKHSSIEQ------------------L 317 (840)
Q Consensus 278 -------------------~l~~L~~L~L~--~~~~~~-~~~i~~L~~L~~L~l~~~~l~~------------------l 317 (840)
....++.+.+. +|.++. |..++++++|++|++++|.++. +
T Consensus 160 ~~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~i 239 (636)
T 4eco_A 160 DLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITFVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYK 239 (636)
T ss_dssp HHHHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHT
T ss_pred HHHHHHhhcCccccccccccccchhhhhhccccCCCccCCHHHhcccCCCEEECcCCccccccccccccccccchhcccC
Confidence 01112222222 345555 6778888888888888888887 8
Q ss_pred Chhhc--CCCCCCEEEccCCCCCCccCcccccCCCCCcEEEccCCc-ccc-eecCCCCCCcccccC------CCCCCeEE
Q 003193 318 PREIG--QLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGNSF-TQW-KVEGQSNASLGELKQ------LSRLTTLE 387 (840)
Q Consensus 318 p~~i~--~L~~L~~L~L~~~~~l~~~p~~~l~~L~~L~~L~l~~~~-~~~-~~~~~~~~~l~~l~~------l~~L~~L~ 387 (840)
|..++ ++++|++|++++|...+.+|.. ++++++|++|++++|. +.. ..+ ..+.. +++|+.|+
T Consensus 240 p~~l~~~~l~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~Ls~n~~l~~~~lp-------~~~~~L~~~~~l~~L~~L~ 311 (636)
T 4eco_A 240 TEDLKWDNLKDLTDVEVYNCPNLTKLPTF-LKALPEMQLINVACNRGISGEQLK-------DDWQALADAPVGEKIQIIY 311 (636)
T ss_dssp TSCCCGGGCTTCCEEEEECCTTCSSCCTT-TTTCSSCCEEECTTCTTSCHHHHH-------HHHHHHHHSGGGGTCCEEE
T ss_pred chhhhhcccCCCCEEEecCCcCCccChHH-HhcCCCCCEEECcCCCCCccccch-------HHHHhhhccccCCCCCEEE
Confidence 88888 8888888888887666777765 7888888888888886 543 222 23333 37888888
Q ss_pred EecCCCCCCCC--cc-cccCcceEEEEEcCccCCCCCccccceEEEeeCCCc-cchhhHHHHHhcccceeeccccccccc
Q 003193 388 VHIPDAQVMPQ--DL-VFVELERFRICIGDVWSWSDGYETSKTLKLQLNNST-YLGYGMKMLLKRTEDLHLDELAGFKNV 463 (840)
Q Consensus 388 l~~~~~~~~~~--~~-~~~~L~~L~l~~~~~~~~~~~~~~l~~L~l~~~~~~-~~~~~~~~~l~~L~~L~L~~~~~~~~~ 463 (840)
+++|.+..+|. .+ .+++|+.|++. .+... .+| .+. .+++|+.|++++|... .+
T Consensus 312 L~~n~l~~ip~~~~l~~l~~L~~L~L~--------------------~N~l~g~ip-~~~-~l~~L~~L~L~~N~l~-~l 368 (636)
T 4eco_A 312 IGYNNLKTFPVETSLQKMKKLGMLECL--------------------YNQLEGKLP-AFG-SEIKLASLNLAYNQIT-EI 368 (636)
T ss_dssp CCSSCCSSCCCHHHHTTCTTCCEEECC--------------------SCCCEEECC-CCE-EEEEESEEECCSSEEE-EC
T ss_pred CCCCcCCccCchhhhccCCCCCEEeCc--------------------CCcCccchh-hhC-CCCCCCEEECCCCccc-cc
Confidence 88887776665 32 44444444433 32222 222 111 1467777777776544 55
Q ss_pred cccccchhhccc-ccEEEeecCCCeEEEEeCCCccccccccceeecccccccccccccccc-cCCCCcccCCccEEEEec
Q 003193 464 VHELDDEEGFAR-LRHLHVHNGPEILHILNSDGRVGTFPLLESLFLHNLINLEKVCDGKVR-LNEDDKSFSNLRIIKVEG 541 (840)
Q Consensus 464 ~~~l~~~~~l~~-L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~-~~~~~~~~~~L~~L~l~~ 541 (840)
|..+ ..+++ |++|++++|. +..++.. .....+++|+.|+++++.--...+. .++ .....-.+++|+.|++++
T Consensus 369 p~~l---~~l~~~L~~L~Ls~N~-l~~lp~~-~~~~~l~~L~~L~Ls~N~l~~~~p~-~l~~~~~~~~~~~~L~~L~Ls~ 442 (636)
T 4eco_A 369 PANF---CGFTEQVENLSFAHNK-LKYIPNI-FDAKSVSVMSAIDFSYNEIGSVDGK-NFDPLDPTPFKGINVSSINLSN 442 (636)
T ss_dssp CTTS---EEECTTCCEEECCSSC-CSSCCSC-CCTTCSSCEEEEECCSSCTTTTTTC-SSCTTCSSCCCCCCEEEEECCS
T ss_pred cHhh---hhhcccCcEEEccCCc-Ccccchh-hhhcccCccCEEECcCCcCCCcchh-hhcccccccccCCCCCEEECcC
Confidence 5555 56777 8888888776 2222211 1112344778888877532211111 000 000011456788888887
Q ss_pred CCCcccccchhHHhhcccccEEEEecccccceeeccccccccccCCccccccccccceeecccCcccccccCCCCCCCcc
Q 003193 542 CHRVKHLFPFSLVKNLLQLQKVKVTDCTNLKLIVGKESENSAHKNGSISGVYFRKLHFLKLQHLPQLTSSGFDLETPTNT 621 (840)
Q Consensus 542 c~~L~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~c~~L~~~~~~~~~~~~~ 621 (840)
+ .++.+|+ .....+++|++|++++|.- ..++...... .......+++|++|+++++. ++.++..
T Consensus 443 N-~l~~lp~-~~~~~l~~L~~L~Ls~N~l-~~i~~~~~~~-----~~~~~~~l~~L~~L~Ls~N~-l~~lp~~------- 506 (636)
T 4eco_A 443 N-QISKFPK-ELFSTGSPLSSINLMGNML-TEIPKNSLKD-----ENENFKNTYLLTSIDLRFNK-LTKLSDD------- 506 (636)
T ss_dssp S-CCCSCCT-HHHHTTCCCSEEECCSSCC-SBCCSSSSEE-----TTEECTTGGGCCEEECCSSC-CCBCCGG-------
T ss_pred C-ccCcCCH-HHHccCCCCCEEECCCCCC-CCcCHHHhcc-----ccccccccCCccEEECcCCc-CCccChh-------
Confidence 5 4556643 4456678888888887653 3443211100 00001123477777777763 3343322
Q ss_pred CCCCCcccccCCCCCccccccccc--ccCCcceEecccccchhhcccCCccccccCCCceEEEecc------cCCcceee
Q 003193 622 QGSNPGIIAEGDPKDFTSLFNERV--VFPSLKKLKLSSINVEKIWLNSFSAIESWGKNLTKLTVEK------CGRLKFLF 693 (840)
Q Consensus 622 ~~~~l~~l~~~~~~~~~~~~~~~~--~l~~L~~L~l~~c~l~~~~~~~~~~~~~~l~~L~~L~i~~------C~~L~~l~ 693 (840)
.. .+++|++|++++|.++.+|.. ...+++|+.|++++ +.-...+|
T Consensus 507 ----------------------~~~~~l~~L~~L~Ls~N~l~~ip~~-----~~~l~~L~~L~Ls~N~~ls~N~l~~~~p 559 (636)
T 4eco_A 507 ----------------------FRATTLPYLVGIDLSYNSFSKFPTQ-----PLNSSTLKGFGIRNQRDAQGNRTLREWP 559 (636)
T ss_dssp ----------------------GSTTTCTTCCEEECCSSCCSSCCCG-----GGGCSSCCEEECCSCBCTTCCBCCCCCC
T ss_pred ----------------------hhhccCCCcCEEECCCCCCCCcChh-----hhcCCCCCEEECCCCcccccCcccccCh
Confidence 12 577888888888877665432 23567888888854 22233333
Q ss_pred chhhHhhhcccceeeecccccchhhhccCcccccCccccccccccccccccCCcceeecCCCC--------ccCCCcceE
Q 003193 694 SSSMVNGLEQLQQLDISHCKSMNEVINTRVGRDDNMIEMVFPKLVSLQLSHLPKLTRFGIGDS--------VEFPSLCQL 765 (840)
Q Consensus 694 ~~~~~~~l~sL~~L~i~~C~~L~~i~~~~~~~~~~~~~~~l~sL~~L~i~~c~~L~~l~~~~~--------~~l~sL~~L 765 (840)
..+..+++|++|++++|. +..+ |..+ .++|+.|++++|+ ++++..... ..+...+..
T Consensus 560 --~~l~~l~~L~~L~Ls~N~-l~~i---p~~~--------~~~L~~L~Ls~N~-l~~~~~~~~~~~~~~~~~~l~~~~~~ 624 (636)
T 4eco_A 560 --EGITLCPSLTQLQIGSND-IRKV---NEKI--------TPNISVLDIKDNP-NISIDLSYVCPYIEAGMYMLFYDKTQ 624 (636)
T ss_dssp --TTGGGCSSCCEEECCSSC-CCBC---CSCC--------CTTCCEEECCSCT-TCEEECTTTHHHHHTTCCEEECCTTS
T ss_pred --HHHhcCCCCCEEECCCCc-CCcc---CHhH--------hCcCCEEECcCCC-CccccHHhcchhhhcccceeecCCcc
Confidence 236677788888888755 3555 5543 4678888888775 444432221 122333555
Q ss_pred EeccCCCcc
Q 003193 766 QIACCPNLK 774 (840)
Q Consensus 766 ~i~~C~~L~ 774 (840)
+|.+|+.|+
T Consensus 625 ~i~~C~~L~ 633 (636)
T 4eco_A 625 DIRGCDALD 633 (636)
T ss_dssp EEESCGGGC
T ss_pred ccCCCcccc
Confidence 777777764
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.96 E-value=4.6e-29 Score=293.20 Aligned_cols=426 Identities=16% Similarity=0.138 Sum_probs=255.3
Q ss_pred CcceeEeeccCccccCCCchhhcCCCCCcEEEc-CCCCCCCC-Chh----------------------------------
Q 003193 232 LKLKLFLFFTENLSLQIPDPFFEGMTELRVLDL-TGFRFHSL-PSS---------------------------------- 275 (840)
Q Consensus 232 ~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~l-~~~~~~~l-p~~---------------------------------- 275 (840)
.++..|+++++.+.+.+|+.+ +++++|++|+| ++|.+... |-.
T Consensus 323 ~~V~~L~Ls~~~L~G~ip~~l-~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s 401 (876)
T 4ecn_A 323 GRVTGLSLAGFGAKGRVPDAI-GQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLS 401 (876)
T ss_dssp SCEEEEECTTTCCEEEECGGG-GGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSC
T ss_pred CCEEEEECccCCCCCcCchHH-hccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhh
Confidence 578889999999988888766 88999999999 66643210 000
Q ss_pred ---------------h--cCCCCCCEEEccC--CccCC-cccccCCCCCCEEeecCCCCcc------------------c
Q 003193 276 ---------------L--GCLINLRTLSLEN--CLVVD-VAIIGDLKKLEILSLKHSSIEQ------------------L 317 (840)
Q Consensus 276 ---------------l--~~l~~L~~L~L~~--~~~~~-~~~i~~L~~L~~L~l~~~~l~~------------------l 317 (840)
+ .....++.+.+.. |.++. |..++++++|++|++++|.++. +
T Consensus 402 ~l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~i 481 (876)
T 4ecn_A 402 DLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYE 481 (876)
T ss_dssp HHHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHT
T ss_pred HHHHHHhhhCccccccccccccchhhceeccccCcccchhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccC
Confidence 0 1112233333332 45555 7778888888888888888887 8
Q ss_pred Chhhc--CCCCCCEEEccCCCCCCccCcccccCCCCCcEEEccCCc-ccc-eecCCCCCCcc----cccCCCCCCeEEEe
Q 003193 318 PREIG--QLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGNSF-TQW-KVEGQSNASLG----ELKQLSRLTTLEVH 389 (840)
Q Consensus 318 p~~i~--~L~~L~~L~L~~~~~l~~~p~~~l~~L~~L~~L~l~~~~-~~~-~~~~~~~~~l~----~l~~l~~L~~L~l~ 389 (840)
|..++ ++++|++|++++|...+.+|.. ++++++|++|++++|. +.. .++ ..+. .+..+++|+.|+++
T Consensus 482 P~~l~f~~L~~L~~L~Ls~N~l~~~iP~~-l~~L~~L~~L~Ls~N~~lsg~~iP----~~i~~L~~~~~~l~~L~~L~Ls 556 (876)
T 4ecn_A 482 NEELSWSNLKDLTDVELYNCPNMTQLPDF-LYDLPELQSLNIACNRGISAAQLK----ADWTRLADDEDTGPKIQIFYMG 556 (876)
T ss_dssp TSCCCGGGCTTCCEEEEESCTTCCSCCGG-GGGCSSCCEEECTTCTTSCHHHHH----HHHHHHHHCTTTTTTCCEEECC
T ss_pred ChhhhhccCCCCCEEECcCCCCCccChHH-HhCCCCCCEEECcCCCCcccccch----HHHHhhhhcccccCCccEEEee
Confidence 88877 8888888888887667777765 7888888888888886 543 222 1111 23355688888888
Q ss_pred cCCCCCCCC--cc-cccCcceEEEEEcCccCCCCCccccceEEEeeCCCccchhhHHHHHhcccceeecccccccccccc
Q 003193 390 IPDAQVMPQ--DL-VFVELERFRICIGDVWSWSDGYETSKTLKLQLNNSTYLGYGMKMLLKRTEDLHLDELAGFKNVVHE 466 (840)
Q Consensus 390 ~~~~~~~~~--~~-~~~~L~~L~l~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~ 466 (840)
+|.+..+|. .+ .+++|+.|++ +.+....+| .+. .+++|+.|++++|... .+|..
T Consensus 557 ~N~L~~ip~~~~l~~L~~L~~L~L--------------------s~N~l~~lp-~~~-~L~~L~~L~Ls~N~l~-~lp~~ 613 (876)
T 4ecn_A 557 YNNLEEFPASASLQKMVKLGLLDC--------------------VHNKVRHLE-AFG-TNVKLTDLKLDYNQIE-EIPED 613 (876)
T ss_dssp SSCCCBCCCHHHHTTCTTCCEEEC--------------------TTSCCCBCC-CCC-TTSEESEEECCSSCCS-CCCTT
T ss_pred CCcCCccCChhhhhcCCCCCEEEC--------------------CCCCcccch-hhc-CCCcceEEECcCCccc-cchHH
Confidence 887776665 32 3444444443 333333333 111 2567778888777654 56655
Q ss_pred ccchhhccc-ccEEEeecCCCeEEEEeCCCcccc--ccccceeecccccccccccccccccCCCCcccCCccEEEEecCC
Q 003193 467 LDDEEGFAR-LRHLHVHNGPEILHILNSDGRVGT--FPLLESLFLHNLINLEKVCDGKVRLNEDDKSFSNLRIIKVEGCH 543 (840)
Q Consensus 467 l~~~~~l~~-L~~L~l~~~~~l~~~~~~~~~~~~--~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~~~~~L~~L~l~~c~ 543 (840)
+ ..+++ |+.|++++|. +..++ ..... .++|+.|+++++.--..++. ++........++|+.|++++|
T Consensus 614 l---~~l~~~L~~L~Ls~N~-L~~lp---~~~~~~~~~~L~~L~Ls~N~l~g~ip~--l~~~l~~~~~~~L~~L~Ls~N- 683 (876)
T 4ecn_A 614 F---CAFTDQVEGLGFSHNK-LKYIP---NIFNAKSVYVMGSVDFSYNKIGSEGRN--ISCSMDDYKGINASTVTLSYN- 683 (876)
T ss_dssp S---CEECTTCCEEECCSSC-CCSCC---SCCCTTCSSCEEEEECCSSCTTTTSSS--CSSCTTTCCCCCEEEEECCSS-
T ss_pred H---hhccccCCEEECcCCC-CCcCc---hhhhccccCCCCEEECcCCcCCCcccc--chhhhccccCCCcCEEEccCC-
Confidence 5 56777 8888888876 22222 12222 34488888877532211110 000000113457888888876
Q ss_pred CcccccchhHHhhcccccEEEEecccccceeeccccccccccCCccccccccccceeecccCcccccccCCCCCCCccCC
Q 003193 544 RVKHLFPFSLVKNLLQLQKVKVTDCTNLKLIVGKESENSAHKNGSISGVYFRKLHFLKLQHLPQLTSSGFDLETPTNTQG 623 (840)
Q Consensus 544 ~L~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~c~~L~~~~~~~~~~~~~~~ 623 (840)
.++.+| ......+++|+.|++++| .+..++...... .......+++|+.|+|++| ++..++...
T Consensus 684 ~L~~lp-~~~~~~l~~L~~L~Ls~N-~L~~ip~~~~~~-----~~~~l~nl~~L~~L~Ls~N-~L~~lp~~l-------- 747 (876)
T 4ecn_A 684 EIQKFP-TELFATGSPISTIILSNN-LMTSIPENSLKP-----KDGNYKNTYLLTTIDLRFN-KLTSLSDDF-------- 747 (876)
T ss_dssp CCCSCC-HHHHHTTCCCSEEECCSC-CCSCCCTTSSSC-----TTSCCTTGGGCCEEECCSS-CCCCCCGGG--------
T ss_pred cCCccC-HHHHccCCCCCEEECCCC-cCCccChHHhcc-----ccccccccCCccEEECCCC-CCccchHHh--------
Confidence 455664 344567788888888886 344444321110 0001223457777877776 344443321
Q ss_pred CCCcccccCCCCCcccccccccccCCcceEecccccchhhcccCCccccccCCCceEEEeccc-----CCc-ceeechhh
Q 003193 624 SNPGIIAEGDPKDFTSLFNERVVFPSLKKLKLSSINVEKIWLNSFSAIESWGKNLTKLTVEKC-----GRL-KFLFSSSM 697 (840)
Q Consensus 624 ~~l~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~l~~~~~~~~~~~~~~l~~L~~L~i~~C-----~~L-~~l~~~~~ 697 (840)
....+++|+.|+|++|.++.+|.. ...+++|+.|+++++ +++ ..+| ..
T Consensus 748 -------------------~~~~l~~L~~L~Ls~N~L~~lp~~-----l~~L~~L~~L~Ls~N~~ls~N~l~~~ip--~~ 801 (876)
T 4ecn_A 748 -------------------RATTLPYLSNMDVSYNCFSSFPTQ-----PLNSSQLKAFGIRHQRDAEGNRILRQWP--TG 801 (876)
T ss_dssp -------------------STTTCTTCCEEECCSSCCSSCCCG-----GGGCTTCCEEECCCCBCTTCCBCCCCCC--TT
T ss_pred -------------------hhccCCCcCEEEeCCCCCCccchh-----hhcCCCCCEEECCCCCCcccccccccCh--HH
Confidence 001477888888888877665332 246678888888652 233 3332 33
Q ss_pred HhhhcccceeeecccccchhhhccCcccccCccccccccccccccccCCcceee
Q 003193 698 VNGLEQLQQLDISHCKSMNEVINTRVGRDDNMIEMVFPKLVSLQLSHLPKLTRF 751 (840)
Q Consensus 698 ~~~l~sL~~L~i~~C~~L~~i~~~~~~~~~~~~~~~l~sL~~L~i~~c~~L~~l 751 (840)
+.++++|+.|++++|. +..+ |..+ .++|+.|+|++|+ +..+
T Consensus 802 l~~L~~L~~L~Ls~N~-L~~I---p~~l--------~~~L~~LdLs~N~-l~~i 842 (876)
T 4ecn_A 802 ITTCPSLIQLQIGSND-IRKV---DEKL--------TPQLYILDIADNP-NISI 842 (876)
T ss_dssp GGGCSSCCEEECCSSC-CCBC---CSCC--------CSSSCEEECCSCT-TCEE
T ss_pred HhcCCCCCEEECCCCC-CCcc---CHhh--------cCCCCEEECCCCC-CCcc
Confidence 6677788888888765 3555 5543 4678888887776 4333
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.2e-27 Score=272.15 Aligned_cols=435 Identities=14% Similarity=0.081 Sum_probs=282.7
Q ss_pred ccchhhhhhccCCCcEEEeccCCcccCCc-c-cCCCcceeEeeccCccccCCCchhhcCCCCCcEEEcCCCCCCCCChhh
Q 003193 199 ADLKEELDKIDEAPTAISIPFRGIYELPE-R-LGFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPSSL 276 (840)
Q Consensus 199 ~~~~~~~~~~~~~l~~L~l~~~~~~~l~~-~-~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~l 276 (840)
..+..+|....+++++|++++|.+..++. . ..+++|++|++++|.+....|. .|.++++|++|++++|.++.+|..
T Consensus 10 n~l~~ip~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~Ls~N~l~~lp~~- 87 (520)
T 2z7x_B 10 NGLIHVPKDLSQKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDIS-VFKFNQELEYLDLSHNKLVKISCH- 87 (520)
T ss_dssp SCCSSCCCSCCTTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGG-GGTTCTTCCEEECCSSCCCEEECC-
T ss_pred CCcccccccccccccEEECCCCcccccChhhccccccccEEecCCCccCCcChH-HhhcccCCCEEecCCCceeecCcc-
Confidence 34556666566899999999999988874 3 3799999999999998754444 459999999999999999999877
Q ss_pred cCCCCCCEEEccCCccCC---cccccCCCCCCEEeecCCCCcccChhhcCCCCC--CEEEccCCCC--CCccCcccccCC
Q 003193 277 GCLINLRTLSLENCLVVD---VAIIGDLKKLEILSLKHSSIEQLPREIGQLTCL--KLLDLSNCSK--LKEIRPNVISNL 349 (840)
Q Consensus 277 ~~l~~L~~L~L~~~~~~~---~~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L--~~L~L~~~~~--l~~~p~~~l~~L 349 (840)
.+++|++|++++|.+.. |..++++++|++|++++|.++. ..+..+++| ++|++++|.. ....|.. ++.+
T Consensus 88 -~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~--~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~-l~~l 163 (520)
T 2z7x_B 88 -PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK--SSVLPIAHLNISKVLLVLGETYGEKEDPEG-LQDF 163 (520)
T ss_dssp -CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG--GGGGGGTTSCEEEEEEEECTTTTSSCCTTT-TTTC
T ss_pred -ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch--hhccccccceeeEEEeeccccccccccccc-cccc
Confidence 89999999999999876 5799999999999999999886 457788888 9999999644 3444433 5554
Q ss_pred CC-CcEEEccCCcccceecCCCCCCcccccCCCCCCeEEEecCC-------CC-CCCCcccccCcceEEEEEcCccCC--
Q 003193 350 TR-LEELYMGNSFTQWKVEGQSNASLGELKQLSRLTTLEVHIPD-------AQ-VMPQDLVFVELERFRICIGDVWSW-- 418 (840)
Q Consensus 350 ~~-L~~L~l~~~~~~~~~~~~~~~~l~~l~~l~~L~~L~l~~~~-------~~-~~~~~~~~~~L~~L~l~~~~~~~~-- 418 (840)
+. .-.+++++|....... -..+.++++|+.|++++|. .. .++.-..+++|+.|.+..+.....
T Consensus 164 ~~~~l~l~l~~n~~~~~~~------~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~ 237 (520)
T 2z7x_B 164 NTESLHIVFPTNKEFHFIL------DVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSF 237 (520)
T ss_dssp CEEEEEEECCSSSCCCCCC------CCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEHHHH
T ss_pred ccceEEEEeccCcchhhhh------hhhhhcccceeeccccccccccccceeecchhhhccccchhhccccccccCHHHH
Confidence 42 2234444444322111 1233445566666666553 10 111111445555555543321110
Q ss_pred -----CCCccccceEEEeeCCCc-cchhhHH----HHHhcccceeecccccccccc-ccccchhhc---ccccEEEeecC
Q 003193 419 -----SDGYETSKTLKLQLNNST-YLGYGMK----MLLKRTEDLHLDELAGFKNVV-HELDDEEGF---ARLRHLHVHNG 484 (840)
Q Consensus 419 -----~~~~~~l~~L~l~~~~~~-~~~~~~~----~~l~~L~~L~L~~~~~~~~~~-~~l~~~~~l---~~L~~L~l~~~ 484 (840)
.....+++.|+++++... .+|.++. ..+++|+.+++.++.. .+| ..+ ..+ ++|+.|+++++
T Consensus 238 ~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~--~~p~~~~---~~~~~~~~L~~L~l~~n 312 (520)
T 2z7x_B 238 IRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF--GFPQSYI---YEIFSNMNIKNFTVSGT 312 (520)
T ss_dssp HHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC--CSCTHHH---HHHHHTCCCSEEEEESS
T ss_pred HHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccce--ecchhhh---hcccccCceeEEEcCCC
Confidence 001235666666655433 3443331 1245666666666554 233 122 222 45778887777
Q ss_pred CCeEEEEeCCCccccccccceeecccccccccccccccccCCCCcccCCccEEEEecCCCcccccch-hHHhhcccccEE
Q 003193 485 PEILHILNSDGRVGTFPLLESLFLHNLINLEKVCDGKVRLNEDDKSFSNLRIIKVEGCHRVKHLFPF-SLVKNLLQLQKV 563 (840)
Q Consensus 485 ~~l~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~-~~~~~l~~L~~L 563 (840)
... . ......+++|++|+++++. +..... .....+++|+.|++++|. ++.++.. ..+..+++|++|
T Consensus 313 ~l~-~----~~~~~~l~~L~~L~Ls~n~-l~~~~~------~~~~~l~~L~~L~L~~N~-l~~l~~~~~~~~~l~~L~~L 379 (520)
T 2z7x_B 313 RMV-H----MLCPSKISPFLHLDFSNNL-LTDTVF------ENCGHLTELETLILQMNQ-LKELSKIAEMTTQMKSLQQL 379 (520)
T ss_dssp CCC-C----CCCCSSCCCCCEEECCSSC-CCTTTT------TTCCCCSSCCEEECCSSC-CCBHHHHHHHHTTCTTCCEE
T ss_pred ccc-c----ccchhhCCcccEEEeECCc-cChhhh------hhhccCCCCCEEEccCCc-cCccccchHHHhhCCCCCEE
Confidence 521 1 1111467788888888753 332111 124578899999998864 5544221 235788999999
Q ss_pred EEecccccceeeccccccccccCCccccccccccceeecccCcccccccCCCCCCCccCCCCCcccccCCCCCccccccc
Q 003193 564 KVTDCTNLKLIVGKESENSAHKNGSISGVYFRKLHFLKLQHLPQLTSSGFDLETPTNTQGSNPGIIAEGDPKDFTSLFNE 643 (840)
Q Consensus 564 ~i~~c~~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~c~~L~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~ 643 (840)
++++|.-...++.. .+..+++|++|+++++.--..++...
T Consensus 380 ~Ls~N~l~~~l~~~------------~~~~l~~L~~L~Ls~N~l~~~~~~~l---------------------------- 419 (520)
T 2z7x_B 380 DISQNSVSYDEKKG------------DCSWTKSLLSLNMSSNILTDTIFRCL---------------------------- 419 (520)
T ss_dssp ECCSSCCBCCGGGC------------SCCCCTTCCEEECCSSCCCGGGGGSC----------------------------
T ss_pred ECCCCcCCcccccc------------hhccCccCCEEECcCCCCCcchhhhh----------------------------
Confidence 99987644334321 23467899999999875333332211
Q ss_pred ccccCCcceEecccccchhhcccCCccccccCCCceEEEecccCCcceeechhhHhhhcccceeeecccc
Q 003193 644 RVVFPSLKKLKLSSINVEKIWLNSFSAIESWGKNLTKLTVEKCGRLKFLFSSSMVNGLEQLQQLDISHCK 713 (840)
Q Consensus 644 ~~~l~~L~~L~l~~c~l~~~~~~~~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~~l~sL~~L~i~~C~ 713 (840)
.++|+.|++++|+++.+|... ..+++|++|++++| +++.+|.. .+..+++|++|++++++
T Consensus 420 ---~~~L~~L~Ls~N~l~~ip~~~-----~~l~~L~~L~L~~N-~l~~l~~~-~~~~l~~L~~L~l~~N~ 479 (520)
T 2z7x_B 420 ---PPRIKVLDLHSNKIKSIPKQV-----VKLEALQELNVASN-QLKSVPDG-IFDRLTSLQKIWLHTNP 479 (520)
T ss_dssp ---CTTCCEEECCSSCCCCCCGGG-----GGCTTCCEEECCSS-CCCCCCTT-TTTTCTTCCEEECCSSC
T ss_pred ---cccCCEEECCCCcccccchhh-----hcCCCCCEEECCCC-cCCccCHH-HhccCCcccEEECcCCC
Confidence 268999999999888766433 36689999999776 68887653 57788999999999866
|
| >3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.95 E-value=3.8e-27 Score=270.19 Aligned_cols=461 Identities=16% Similarity=0.134 Sum_probs=267.7
Q ss_pred CcEEEeccCCcccCCcccCCCcceeEeeccCccccCCCchhhcCCCCCcEEEcCCCCCCCC-ChhhcCCCCCCEEEccCC
Q 003193 212 PTAISIPFRGIYELPERLGFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSL-PSSLGCLINLRTLSLENC 290 (840)
Q Consensus 212 l~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~l-p~~l~~l~~L~~L~L~~~ 290 (840)
.++++++++++..+|..+. +++++|++++|.+. .++...|.++++|++|++++|.++.+ |..|+++++|++|++++|
T Consensus 33 ~~~l~ls~~~L~~ip~~~~-~~L~~L~Ls~N~i~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N 110 (562)
T 3a79_B 33 ESMVDYSNRNLTHVPKDLP-PRTKALSLSQNSIS-ELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHN 110 (562)
T ss_dssp CCEEECTTSCCCSCCTTSC-TTCCEEECCSSCCC-CCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTS
T ss_pred CcEEEcCCCCCccCCCCCC-CCcCEEECCCCCcc-ccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCC
Confidence 3778888888877776543 67777777777765 34444457777777777777777765 566777777777777777
Q ss_pred ccCC-cccccCCCCCCEEeecCCCCcccC--hhhcCCCCCCEEEccCCCCCCccCcccccCCCCC--cEEEccCCcc--c
Q 003193 291 LVVD-VAIIGDLKKLEILSLKHSSIEQLP--REIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRL--EELYMGNSFT--Q 363 (840)
Q Consensus 291 ~~~~-~~~i~~L~~L~~L~l~~~~l~~lp--~~i~~L~~L~~L~L~~~~~l~~~p~~~l~~L~~L--~~L~l~~~~~--~ 363 (840)
.++. |.. .+++|++|++++|.++.+| ..++++++|++|++++ +.+.... ++.+++| ++|++++|.+ .
T Consensus 111 ~l~~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~-n~l~~~~---~~~l~~L~L~~L~L~~n~l~~~ 184 (562)
T 3a79_B 111 RLQNISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSA-AKFRQLD---LLPVAHLHLSCILLDLVSYHIK 184 (562)
T ss_dssp CCCEECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEEC-SBCCTTT---TGGGTTSCEEEEEEEESSCCCC
T ss_pred cCCccCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCC-CccccCc---hhhhhhceeeEEEeeccccccc
Confidence 7776 444 6777777777777777654 5677777777777777 4454432 3444444 7777777654 2
Q ss_pred ceecCCCCCCcccccCCCCCC--eEEEecCCCCCCCCcccccCcceEEEEEcCccCCCCCccccceEEEeeCC--Cccch
Q 003193 364 WKVEGQSNASLGELKQLSRLT--TLEVHIPDAQVMPQDLVFVELERFRICIGDVWSWSDGYETSKTLKLQLNN--STYLG 439 (840)
Q Consensus 364 ~~~~~~~~~~l~~l~~l~~L~--~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~l~~~~--~~~~~ 439 (840)
... ...+..+.. + .++++.|.......... .....+++.++++.+. ...++
T Consensus 185 ~~~-------~~~l~~l~~-~~l~l~l~~n~~~~~~~~~~-----------------~~~l~~L~~L~l~~n~~~~~~l~ 239 (562)
T 3a79_B 185 GGE-------TESLQIPNT-TVLHLVFHPNSLFSVQVNMS-----------------VNALGHLQLSNIKLNDENCQRLM 239 (562)
T ss_dssp SSS-------CCEEEECCE-EEEEEEECSSSCCCCCCEEE-----------------ESSEEEEEEEEEECCSTTHHHHH
T ss_pred ccC-------cccccccCc-ceEEEEecCccchhhhhhhc-----------------ccccceEEEecccccccccchHH
Confidence 111 122332221 1 22333333222111111 1223344555555542 11122
Q ss_pred hhHH--HHHhcccceeeccccccccccccccchhhcccccEEEeecCCCeEEEEeCCCccccccccceeecccccccc-c
Q 003193 440 YGMK--MLLKRTEDLHLDELAGFKNVVHELDDEEGFARLRHLHVHNGPEILHILNSDGRVGTFPLLESLFLHNLINLE-K 516 (840)
Q Consensus 440 ~~~~--~~l~~L~~L~L~~~~~~~~~~~~l~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~~~~L~-~ 516 (840)
..+. ..+++|+.|++.++.........+.+....++|++|++++|.-...++.... ....++|+.|.+.++..-. .
T Consensus 240 ~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~-~~~~~~L~~L~~~~~~~~~~~ 318 (562)
T 3a79_B 240 TFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEF-TYSETALKSLMIEHVKNQVFL 318 (562)
T ss_dssp HHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCC-CCCSCSCCEEEEEEEEECCCS
T ss_pred HHHHHHhccCcceEEEecCCcCcHHHHHHHHHhhhcccccEEEEeccEeeccccchhh-hcccccchheehhhcccceee
Confidence 2221 1235666677766543222111111002234788888887751111111100 0012455555554432211 1
Q ss_pred ccccccccCCCCcccCCccEEEEecCCCcccccchhHHhhcccccEEEEecccccceeeccccccccccCCccccccccc
Q 003193 517 VCDGKVRLNEDDKSFSNLRIIKVEGCHRVKHLFPFSLVKNLLQLQKVKVTDCTNLKLIVGKESENSAHKNGSISGVYFRK 596 (840)
Q Consensus 517 ~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~l~~l~~ 596 (840)
++...+. .....++|+.|+++++. +...+ ....+++|++|+++++.--..++ ..+..+++
T Consensus 319 ~p~~~~~---~~~~~~~L~~L~l~~n~-~~~~~---~~~~l~~L~~L~l~~n~l~~~~~-------------~~~~~l~~ 378 (562)
T 3a79_B 319 FSKEALY---SVFAEMNIKMLSISDTP-FIHMV---CPPSPSSFTFLNFTQNVFTDSVF-------------QGCSTLKR 378 (562)
T ss_dssp SCHHHHH---HHHHTCCCSEEEEESSC-CCCCC---CCSSCCCCCEEECCSSCCCTTTT-------------TTCCSCSS
T ss_pred cChhhhh---hhhccCcceEEEccCCC-ccccc---CccCCCCceEEECCCCccccchh-------------hhhcccCC
Confidence 1100000 00012468888888764 33221 12467788888888765332221 13446778
Q ss_pred cceeecccCcccccccCCCCCCCccCCCCCcccccCCCCCcccccccccccCCcceEecccccchh-hcccCCccccccC
Q 003193 597 LHFLKLQHLPQLTSSGFDLETPTNTQGSNPGIIAEGDPKDFTSLFNERVVFPSLKKLKLSSINVEK-IWLNSFSAIESWG 675 (840)
Q Consensus 597 L~~L~l~~c~~L~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~l~~-~~~~~~~~~~~~l 675 (840)
|++|++.++ .++.++. .+..+..+++|++|++++|.++. ++.+.+ ..+
T Consensus 379 L~~L~L~~N-~l~~~~~--------------------------~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~----~~l 427 (562)
T 3a79_B 379 LQTLILQRN-GLKNFFK--------------------------VALMTKNMSSLETLDVSLNSLNSHAYDRTC----AWA 427 (562)
T ss_dssp CCEEECCSS-CCCBTTH--------------------------HHHTTTTCTTCCEEECTTSCCBSCCSSCCC----CCC
T ss_pred CCEEECCCC-CcCCccc--------------------------chhhhcCCCCCCEEECCCCcCCCccChhhh----cCc
Confidence 888888775 3333211 11223568999999999998877 665544 467
Q ss_pred CCceEEEecccCCcceeechhhHhhh-cccceeeecccccchhhhccCcccccCccccccccccccccccCCcceeecCC
Q 003193 676 KNLTKLTVEKCGRLKFLFSSSMVNGL-EQLQQLDISHCKSMNEVINTRVGRDDNMIEMVFPKLVSLQLSHLPKLTRFGIG 754 (840)
Q Consensus 676 ~~L~~L~i~~C~~L~~l~~~~~~~~l-~sL~~L~i~~C~~L~~i~~~~~~~~~~~~~~~l~sL~~L~i~~c~~L~~l~~~ 754 (840)
++|+.|++++|. ++.. ....+ ++|++|++++| .++.+ |.+... +++|+.|+++++ +++.+|..
T Consensus 428 ~~L~~L~l~~n~-l~~~----~~~~l~~~L~~L~L~~N-~l~~i---p~~~~~------l~~L~~L~L~~N-~l~~l~~~ 491 (562)
T 3a79_B 428 ESILVLNLSSNM-LTGS----VFRCLPPKVKVLDLHNN-RIMSI---PKDVTH------LQALQELNVASN-QLKSVPDG 491 (562)
T ss_dssp TTCCEEECCSSC-CCGG----GGSSCCTTCSEEECCSS-CCCCC---CTTTTS------SCCCSEEECCSS-CCCCCCTT
T ss_pred ccCCEEECCCCC-CCcc----hhhhhcCcCCEEECCCC-cCccc---ChhhcC------CCCCCEEECCCC-CCCCCCHH
Confidence 999999998875 4432 12334 68999999997 67776 666654 899999999998 58888875
Q ss_pred CCccCCCcceEEeccCCCc
Q 003193 755 DSVEFPSLCQLQIACCPNL 773 (840)
Q Consensus 755 ~~~~l~sL~~L~i~~C~~L 773 (840)
.+..+++|+.|++.++|--
T Consensus 492 ~~~~l~~L~~L~l~~N~~~ 510 (562)
T 3a79_B 492 VFDRLTSLQYIWLHDNPWD 510 (562)
T ss_dssp STTTCTTCCCEECCSCCBC
T ss_pred HHhcCCCCCEEEecCCCcC
Confidence 4568899999999998743
|
| >4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=3e-26 Score=267.96 Aligned_cols=497 Identities=15% Similarity=0.120 Sum_probs=307.2
Q ss_pred EEEeccCCcccCCcccCCCcceeEeeccCccccCCCchhhcCCCCCcEEEcCCCCCCCCCh-hhcCCCCCCEEEccCCcc
Q 003193 214 AISIPFRGIYELPERLGFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPS-SLGCLINLRTLSLENCLV 292 (840)
Q Consensus 214 ~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~-~l~~l~~L~~L~L~~~~~ 292 (840)
..+-++.++..+|..+. +.+++|++++|.+. .+|+..|.++++|++|+|++|.++.+|+ +|.++++|++|+|++|.+
T Consensus 35 ~~~c~~~~l~~vP~~lp-~~~~~LdLs~N~i~-~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l 112 (635)
T 4g8a_A 35 TYQCMELNFYKIPDNLP-FSTKNLDLSFNPLR-HLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPI 112 (635)
T ss_dssp EEECTTSCCSSCCSSSC-TTCCEEECTTSCCC-EECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCC
T ss_pred EEECCCCCcCccCCCCC-cCCCEEEeeCCCCC-CCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcC
Confidence 44455556778887552 47999999999887 5666667999999999999999998854 689999999999999999
Q ss_pred CC-c-ccccCCCCCCEEeecCCCCcccCh-hhcCCCCCCEEEccCCCCCCccC-cccccCCCCCcEEEccCCcccceecC
Q 003193 293 VD-V-AIIGDLKKLEILSLKHSSIEQLPR-EIGQLTCLKLLDLSNCSKLKEIR-PNVISNLTRLEELYMGNSFTQWKVEG 368 (840)
Q Consensus 293 ~~-~-~~i~~L~~L~~L~l~~~~l~~lp~-~i~~L~~L~~L~L~~~~~l~~~p-~~~l~~L~~L~~L~l~~~~~~~~~~~ 368 (840)
+. | ..|+++++|++|++++|+++.+|. .++++++|++|++++ +.+..++ +..++.+++|++|++++|.+....+
T Consensus 113 ~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~-N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~- 190 (635)
T 4g8a_A 113 QSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAH-NLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYC- 190 (635)
T ss_dssp CEECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCS-SCCCCCCCCGGGGGCTTCCEEECCSSCCCEECG-
T ss_pred CCCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeecccc-CccccCCCchhhccchhhhhhcccCcccccccc-
Confidence 88 4 568999999999999999999886 489999999999999 5565442 2337889999999999997764332
Q ss_pred CCCCCcccccCCCC-CCeEEEecCCCCCCCCcc-cccCcceEEEEEcCcc-----CCCCCccccceEEEeeCCCc---c-
Q 003193 369 QSNASLGELKQLSR-LTTLEVHIPDAQVMPQDL-VFVELERFRICIGDVW-----SWSDGYETSKTLKLQLNNST---Y- 437 (840)
Q Consensus 369 ~~~~~l~~l~~l~~-L~~L~l~~~~~~~~~~~~-~~~~L~~L~l~~~~~~-----~~~~~~~~l~~L~l~~~~~~---~- 437 (840)
..+..+.++.. +..++++.+.+..++... ....+..+.+..+... ..+.....++...+...... .
T Consensus 191 ---~~l~~L~~l~~~~~~~~ls~n~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l 267 (635)
T 4g8a_A 191 ---TDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNL 267 (635)
T ss_dssp ---GGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCC
T ss_pred ---ccccchhhhhhhhhhhhcccCcccccCcccccchhhhhhhhhcccccccccchhhcCCccccccccccccccccccc
Confidence 23334444432 335777777766555442 3333444444322110 11222333333333221100 0
Q ss_pred --chhhHHHHHhcccceeeccccccc---cccccccchhhcccccEEEeecCCCeEEEEeCCCccccccccceeeccccc
Q 003193 438 --LGYGMKMLLKRTEDLHLDELAGFK---NVVHELDDEEGFARLRHLHVHNGPEILHILNSDGRVGTFPLLESLFLHNLI 512 (840)
Q Consensus 438 --~~~~~~~~l~~L~~L~L~~~~~~~---~~~~~l~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~~~ 512 (840)
...........+....+....... .....+ ..+.+++.+.+.++.. .. .......+.|+.|.+.++.
T Consensus 268 ~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~---~~~~~l~~l~~~~~~~-~~----~~~~~~~~~L~~L~l~~~~ 339 (635)
T 4g8a_A 268 EKFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLF---NCLTNVSSFSLVSVTI-ER----VKDFSYNFGWQHLELVNCK 339 (635)
T ss_dssp SCCCTTTTGGGGGSEEEEEEEECCCSCEEECTTTT---GGGTTCSEEEEESCEE-EE----CGGGGSCCCCSEEEEESCE
T ss_pred ccccccccccccchhhhhhhhhhhcccccchhhhh---hhhccccccccccccc-cc----ccccccchhhhhhhccccc
Confidence 000000011222222222221111 111112 4456666776666541 11 1122445567777777653
Q ss_pred ccccccccccccCCCCcccCCccEEEEecCCCcccccchhHHhhcccccEEEEecccccceeeccccccccccCCccccc
Q 003193 513 NLEKVCDGKVRLNEDDKSFSNLRIIKVEGCHRVKHLFPFSLVKNLLQLQKVKVTDCTNLKLIVGKESENSAHKNGSISGV 592 (840)
Q Consensus 513 ~L~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~l~ 592 (840)
+..+ + ...++.|+.+.+..... ...+. ...+++|+.++++++..-...... ....
T Consensus 340 -~~~~-----~----~~~l~~L~~l~l~~n~~-~~~~~---~~~l~~L~~L~ls~n~l~~~~~~~-----------~~~~ 394 (635)
T 4g8a_A 340 -FGQF-----P----TLKLKSLKRLTFTSNKG-GNAFS---EVDLPSLEFLDLSRNGLSFKGCCS-----------QSDF 394 (635)
T ss_dssp -ESSC-----C----CCBCTTCCEEEEESCCS-CCBCC---CCBCTTCCEEECCSSCCBEEEECC-----------HHHH
T ss_pred -ccCc-----C----cccchhhhhcccccccC-CCCcc---cccccccccchhhccccccccccc-----------cchh
Confidence 2211 1 34567778887776532 22222 235778888888775432211110 1223
Q ss_pred cccccceeecccCcccccccCCCCCCCccCCCCCcccccCCCCCcccc-cccccccCCcceEecccccchhhcccCCccc
Q 003193 593 YFRKLHFLKLQHLPQLTSSGFDLETPTNTQGSNPGIIAEGDPKDFTSL-FNERVVFPSLKKLKLSSINVEKIWLNSFSAI 671 (840)
Q Consensus 593 ~l~~L~~L~l~~c~~L~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~-~~~~~~l~~L~~L~l~~c~l~~~~~~~~~~~ 671 (840)
..++|+.+++..+..... +. .......++.+....+...... ......+++++.++++.|.+..+..+.+
T Consensus 395 ~~~~L~~L~~~~~~~~~~-~~-----~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~--- 465 (635)
T 4g8a_A 395 GTISLKYLDLSFNGVITM-SS-----NFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIF--- 465 (635)
T ss_dssp SCSCCCEEECCSCSEEEE-CS-----CCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTT---
T ss_pred hhhhhhhhhccccccccc-cc-----cccccccccchhhhhcccccccccccccccccccccccccccccccccccc---
Confidence 567788887776543222 11 1123334444443332221111 2234567889999999997776655444
Q ss_pred cccCCCceEEEecccCCcceeechhhHhhhcccceeeecccccchhhhccCcccccCccccccccccccccccCCcceee
Q 003193 672 ESWGKNLTKLTVEKCGRLKFLFSSSMVNGLEQLQQLDISHCKSMNEVINTRVGRDDNMIEMVFPKLVSLQLSHLPKLTRF 751 (840)
Q Consensus 672 ~~~l~~L~~L~i~~C~~L~~l~~~~~~~~l~sL~~L~i~~C~~L~~i~~~~~~~~~~~~~~~l~sL~~L~i~~c~~L~~l 751 (840)
..+++|+.|++++++.....++ ..+..+++|++|++++| +++.+. |..+.. +++|+.|+++++ +++.+
T Consensus 466 -~~~~~L~~L~Ls~N~~~~~~~~-~~~~~l~~L~~L~Ls~N-~L~~l~--~~~f~~------l~~L~~L~Ls~N-~l~~l 533 (635)
T 4g8a_A 466 -NGLSSLEVLKMAGNSFQENFLP-DIFTELRNLTFLDLSQC-QLEQLS--PTAFNS------LSSLQVLNMSHN-NFFSL 533 (635)
T ss_dssp -TTCTTCCEEECTTCEEGGGEEC-SCCTTCTTCCEEECTTS-CCCEEC--TTTTTT------CTTCCEEECTTS-CCCBC
T ss_pred -ccchhhhhhhhhhcccccccCc-hhhhhccccCEEECCCC-ccCCcC--hHHHcC------CCCCCEEECCCC-cCCCC
Confidence 4679999999998877766544 45788999999999997 466663 444444 899999999998 68888
Q ss_pred cCCCCccCCCcceEEeccCC
Q 003193 752 GIGDSVEFPSLCQLQIACCP 771 (840)
Q Consensus 752 ~~~~~~~l~sL~~L~i~~C~ 771 (840)
+...+.++++|+.|+++++.
T Consensus 534 ~~~~~~~l~~L~~L~Ls~N~ 553 (635)
T 4g8a_A 534 DTFPYKCLNSLQVLDYSLNH 553 (635)
T ss_dssp CCGGGTTCTTCCEEECTTSC
T ss_pred ChhHHhCCCCCCEEECCCCc
Confidence 76666688999999999984
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A | Back alignment and structure |
|---|
Probab=99.94 E-value=6.2e-26 Score=253.59 Aligned_cols=299 Identities=21% Similarity=0.277 Sum_probs=204.4
Q ss_pred hccCCCcEEEeccCCcccCCcccCCCcceeEeeccCccccCCCchhhcCCCCCcEEEcCCCCCCCCChhhcCCCCCCEEE
Q 003193 207 KIDEAPTAISIPFRGIYELPERLGFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPSSLGCLINLRTLS 286 (840)
Q Consensus 207 ~~~~~l~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~l~~l~~L~~L~ 286 (840)
....+++.|++.++.+..+|....+++|++|++++|.+.. ++. +.++++|++|++++|.+..++. ++++++|++|+
T Consensus 43 ~~l~~l~~L~l~~~~i~~l~~~~~l~~L~~L~Ls~n~l~~-~~~--~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~ 118 (466)
T 1o6v_A 43 TDLDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTD-ITP--LKNLTKLVDILMNNNQIADITP-LANLTNLTGLT 118 (466)
T ss_dssp HHHHTCCEEECCSSCCCCCTTGGGCTTCCEEECCSSCCCC-CGG--GTTCTTCCEEECCSSCCCCCGG-GTTCTTCCEEE
T ss_pred hHhccccEEecCCCCCccCcchhhhcCCCEEECCCCccCC-chh--hhccccCCEEECCCCccccChh-hcCCCCCCEEE
Confidence 4467899999999999888876689999999999998764 444 6899999999999999998877 99999999999
Q ss_pred ccCCccCCcccccCCCCCCEEeecCCCCcccChhhcCCCCCCEEEccCCCCCCccCcccccCCCCCcEEEccCCccccee
Q 003193 287 LENCLVVDVAIIGDLKKLEILSLKHSSIEQLPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGNSFTQWKV 366 (840)
Q Consensus 287 L~~~~~~~~~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~L~~~~~l~~~p~~~l~~L~~L~~L~l~~~~~~~~~ 366 (840)
+++|.+...+.++++++|++|++++|.++.+|. ++++++|++|++++ .+..+++ ++++++|++|++++|.+.
T Consensus 119 L~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~--~~~~~~~--~~~l~~L~~L~l~~n~l~--- 190 (466)
T 1o6v_A 119 LFNNQITDIDPLKNLTNLNRLELSSNTISDISA-LSGLTSLQQLSFGN--QVTDLKP--LANLTTLERLDISSNKVS--- 190 (466)
T ss_dssp CCSSCCCCCGGGTTCTTCSEEEEEEEEECCCGG-GTTCTTCSEEEEEE--SCCCCGG--GTTCTTCCEEECCSSCCC---
T ss_pred CCCCCCCCChHHcCCCCCCEEECCCCccCCChh-hccCCcccEeecCC--cccCchh--hccCCCCCEEECcCCcCC---
Confidence 999999885459999999999999999998874 89999999999974 4555554 789999999999998753
Q ss_pred cCCCCCCcccccCCCCCCeEEEecCCCCCCCCcccccCcceEEEEEcCccCCCCCccccceEEEeeCCCccchhhHHHHH
Q 003193 367 EGQSNASLGELKQLSRLTTLEVHIPDAQVMPQDLVFVELERFRICIGDVWSWSDGYETSKTLKLQLNNSTYLGYGMKMLL 446 (840)
Q Consensus 367 ~~~~~~~l~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~l 446 (840)
.+..+..+++|+.|++++|.+...+....+++|+.|++ +++.....+. + ..+
T Consensus 191 ------~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l--------------------~~n~l~~~~~-l-~~l 242 (466)
T 1o6v_A 191 ------DISVLAKLTNLESLIATNNQISDITPLGILTNLDELSL--------------------NGNQLKDIGT-L-ASL 242 (466)
T ss_dssp ------CCGGGGGCTTCSEEECCSSCCCCCGGGGGCTTCCEEEC--------------------CSSCCCCCGG-G-GGC
T ss_pred ------CChhhccCCCCCEEEecCCcccccccccccCCCCEEEC--------------------CCCCcccchh-h-hcC
Confidence 23457788999999999887765543223344444433 3332222211 1 124
Q ss_pred hcccceeeccccccccccccccchhhcccccEEEeecCCCeEEEEeCCCccccccccceeecccccccccccccccccCC
Q 003193 447 KRTEDLHLDELAGFKNVVHELDDEEGFARLRHLHVHNGPEILHILNSDGRVGTFPLLESLFLHNLINLEKVCDGKVRLNE 526 (840)
Q Consensus 447 ~~L~~L~L~~~~~~~~~~~~l~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~ 526 (840)
++|+.|++++|......+ + ..+++|++|++++|.- ..+ .....+++|+.|+++++ .++.+..
T Consensus 243 ~~L~~L~l~~n~l~~~~~--~---~~l~~L~~L~l~~n~l-~~~----~~~~~l~~L~~L~L~~n-~l~~~~~------- 304 (466)
T 1o6v_A 243 TNLTDLDLANNQISNLAP--L---SGLTKLTELKLGANQI-SNI----SPLAGLTALTNLELNEN-QLEDISP------- 304 (466)
T ss_dssp TTCSEEECCSSCCCCCGG--G---TTCTTCSEEECCSSCC-CCC----GGGTTCTTCSEEECCSS-CCSCCGG-------
T ss_pred CCCCEEECCCCccccchh--h---hcCCCCCEEECCCCcc-Ccc----ccccCCCccCeEEcCCC-cccCchh-------
Confidence 566666666654332211 2 5566666666666641 111 11345566666666653 2332211
Q ss_pred CCcccCCccEEEEecCCCcccccchhHHhhcccccEEEEecc
Q 003193 527 DDKSFSNLRIIKVEGCHRVKHLFPFSLVKNLLQLQKVKVTDC 568 (840)
Q Consensus 527 ~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~i~~c 568 (840)
...+++|+.|++++| .++.+++ +..+++|++|++++|
T Consensus 305 -~~~l~~L~~L~L~~n-~l~~~~~---~~~l~~L~~L~l~~n 341 (466)
T 1o6v_A 305 -ISNLKNLTYLTLYFN-NISDISP---VSSLTKLQRLFFYNN 341 (466)
T ss_dssp -GGGCTTCSEEECCSS-CCSCCGG---GGGCTTCCEEECCSS
T ss_pred -hcCCCCCCEEECcCC-cCCCchh---hccCccCCEeECCCC
Confidence 335566666666665 3444433 345566666666655
|
| >3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.94 E-value=1.1e-25 Score=258.04 Aligned_cols=440 Identities=15% Similarity=0.078 Sum_probs=264.6
Q ss_pred cCccchhhhhhccCCCcEEEeccCCcccCCc-cc-CCCcceeEeeccCccccCCCchhhcCCCCCcEEEcCCCCCCCCCh
Q 003193 197 NVADLKEELDKIDEAPTAISIPFRGIYELPE-RL-GFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPS 274 (840)
Q Consensus 197 ~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~~-~~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~ 274 (840)
.+..+..+|...++++++|++++|.+..++. .+ .+++|++|++++|.+....| +.|.++++|++|++++|.++.+|.
T Consensus 39 s~~~L~~ip~~~~~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~lp~ 117 (562)
T 3a79_B 39 SNRNLTHVPKDLPPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDF-HVFLFNQDLEYLDVSHNRLQNISC 117 (562)
T ss_dssp TTSCCCSCCTTSCTTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECT-TTTTTCTTCCEEECTTSCCCEECS
T ss_pred CCCCCccCCCCCCCCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCH-HHhCCCCCCCEEECCCCcCCccCc
Confidence 3445666777677899999999999988874 33 89999999999999875444 456899999999999999999998
Q ss_pred hhcCCCCCCEEEccCCccCC---cccccCCCCCCEEeecCCCCcccChhhcCCCCC--CEEEccCCCC--CCccCccccc
Q 003193 275 SLGCLINLRTLSLENCLVVD---VAIIGDLKKLEILSLKHSSIEQLPREIGQLTCL--KLLDLSNCSK--LKEIRPNVIS 347 (840)
Q Consensus 275 ~l~~l~~L~~L~L~~~~~~~---~~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L--~~L~L~~~~~--l~~~p~~~l~ 347 (840)
. .+++|++|++++|.+.. |..++++++|++|++++|.++.. .+..+++| ++|++++|.. ....|.. +.
T Consensus 118 ~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~--~~~~l~~L~L~~L~L~~n~l~~~~~~~~~-l~ 192 (562)
T 3a79_B 118 C--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL--DLLPVAHLHLSCILLDLVSYHIKGGETES-LQ 192 (562)
T ss_dssp C--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT--TTGGGTTSCEEEEEEEESSCCCCSSSCCE-EE
T ss_pred c--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccC--chhhhhhceeeEEEeecccccccccCccc-cc
Confidence 7 89999999999999887 37899999999999999998863 45666666 9999999543 2333332 55
Q ss_pred CCC--CCcEEEccCCcccceecCCCCCCcccccCCCCCCeEEEecCCCC--CCCC---c-ccccCcceEEEEEcCccCC-
Q 003193 348 NLT--RLEELYMGNSFTQWKVEGQSNASLGELKQLSRLTTLEVHIPDAQ--VMPQ---D-LVFVELERFRICIGDVWSW- 418 (840)
Q Consensus 348 ~L~--~L~~L~l~~~~~~~~~~~~~~~~l~~l~~l~~L~~L~l~~~~~~--~~~~---~-~~~~~L~~L~l~~~~~~~~- 418 (840)
.+. .| .+++++|.+.... .-..+..+++|+.++++.|... .++. . ...++|+.+.+........
T Consensus 193 ~l~~~~l-~l~l~~n~~~~~~------~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~ 265 (562)
T 3a79_B 193 IPNTTVL-HLVFHPNSLFSVQ------VNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKC 265 (562)
T ss_dssp ECCEEEE-EEEECSSSCCCCC------CEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHH
T ss_pred ccCcceE-EEEecCccchhhh------hhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHH
Confidence 443 12 3344444332211 1122344555666666655310 0000 0 1233444444432221100
Q ss_pred ------CCCccccceEEEeeCCCc-cchhhHHH-HHhcccceeeccccccc-ccc-ccccchhhcccccEEEeecCCCeE
Q 003193 419 ------SDGYETSKTLKLQLNNST-YLGYGMKM-LLKRTEDLHLDELAGFK-NVV-HELDDEEGFARLRHLHVHNGPEIL 488 (840)
Q Consensus 419 ------~~~~~~l~~L~l~~~~~~-~~~~~~~~-~l~~L~~L~L~~~~~~~-~~~-~~l~~~~~l~~L~~L~l~~~~~l~ 488 (840)
.....+++.|+++.+... .+|.++.. ..++|+.|.+.++.... .++ ..+...-..++|++|+++++.-.
T Consensus 266 ~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~~- 344 (562)
T 3a79_B 266 SVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFI- 344 (562)
T ss_dssp HHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCCC-
T ss_pred HHHHHHhhhcccccEEEEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEccCCCcc-
Confidence 001124555555554332 23332210 01233333333322111 111 01100001245777777776521
Q ss_pred EEEeCCCccccccccceeecccccccccccccccccCCCCcccCCccEEEEecCCCcccccch-hHHhhcccccEEEEec
Q 003193 489 HILNSDGRVGTFPLLESLFLHNLINLEKVCDGKVRLNEDDKSFSNLRIIKVEGCHRVKHLFPF-SLVKNLLQLQKVKVTD 567 (840)
Q Consensus 489 ~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~-~~~~~l~~L~~L~i~~ 567 (840)
. ......+++|++|+++++. +..... .....+++|+.|+++++ +++.+++. ..+..+++|++|++++
T Consensus 345 ~----~~~~~~l~~L~~L~l~~n~-l~~~~~------~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~~~l~~L~~L~l~~ 412 (562)
T 3a79_B 345 H----MVCPPSPSSFTFLNFTQNV-FTDSVF------QGCSTLKRLQTLILQRN-GLKNFFKVALMTKNMSSLETLDVSL 412 (562)
T ss_dssp C----CCCCSSCCCCCEEECCSSC-CCTTTT------TTCCSCSSCCEEECCSS-CCCBTTHHHHTTTTCTTCCEEECTT
T ss_pred c----ccCccCCCCceEEECCCCc-cccchh------hhhcccCCCCEEECCCC-CcCCcccchhhhcCCCCCCEEECCC
Confidence 1 0111456777777777742 332111 12456788888888875 56655322 2246778888888888
Q ss_pred ccccceeeccccccccccCCccccccccccceeecccCcccccccCCCCCCCccCCCCCcccccCCCCCccccccccccc
Q 003193 568 CTNLKLIVGKESENSAHKNGSISGVYFRKLHFLKLQHLPQLTSSGFDLETPTNTQGSNPGIIAEGDPKDFTSLFNERVVF 647 (840)
Q Consensus 568 c~~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~c~~L~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~l 647 (840)
|.--..++.. .+..+++|++|+++++.--..++. .+
T Consensus 413 N~l~~~~~~~------------~~~~l~~L~~L~l~~n~l~~~~~~--------------------------------~l 448 (562)
T 3a79_B 413 NSLNSHAYDR------------TCAWAESILVLNLSSNMLTGSVFR--------------------------------CL 448 (562)
T ss_dssp SCCBSCCSSC------------CCCCCTTCCEEECCSSCCCGGGGS--------------------------------SC
T ss_pred CcCCCccChh------------hhcCcccCCEEECCCCCCCcchhh--------------------------------hh
Confidence 7643323321 233678888888888753222221 12
Q ss_pred -CCcceEecccccchhhcccCCccccccCCCceEEEecccCCcceeechhhHhhhcccceeeecccc
Q 003193 648 -PSLKKLKLSSINVEKIWLNSFSAIESWGKNLTKLTVEKCGRLKFLFSSSMVNGLEQLQQLDISHCK 713 (840)
Q Consensus 648 -~~L~~L~l~~c~l~~~~~~~~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~~l~sL~~L~i~~C~ 713 (840)
++|++|++++|.++.+|.+.. .+++|+.|+++++ +++.+|.. .+..+++|+.|++++++
T Consensus 449 ~~~L~~L~L~~N~l~~ip~~~~-----~l~~L~~L~L~~N-~l~~l~~~-~~~~l~~L~~L~l~~N~ 508 (562)
T 3a79_B 449 PPKVKVLDLHNNRIMSIPKDVT-----HLQALQELNVASN-QLKSVPDG-VFDRLTSLQYIWLHDNP 508 (562)
T ss_dssp CTTCSEEECCSSCCCCCCTTTT-----SSCCCSEEECCSS-CCCCCCTT-STTTCTTCCCEECCSCC
T ss_pred cCcCCEEECCCCcCcccChhhc-----CCCCCCEEECCCC-CCCCCCHH-HHhcCCCCCEEEecCCC
Confidence 588888888888877665432 5688888888665 67777643 46788888888888865
|
| >3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.93 E-value=2e-24 Score=239.09 Aligned_cols=165 Identities=15% Similarity=0.155 Sum_probs=112.2
Q ss_pred ccCCCcEEEeccCCcccCCcccCCCcceeEeeccCccccCCCchhhcCCCCCcEEEcCCCCCCCCChhhcCCCCCCEEEc
Q 003193 208 IDEAPTAISIPFRGIYELPERLGFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPSSLGCLINLRTLSL 287 (840)
Q Consensus 208 ~~~~l~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~l~~l~~L~~L~L 287 (840)
..+++++|++++|.+..+|....+++|++|++++|.+.. +| +..+++|++|++++|.++.+| ++++++|++|++
T Consensus 40 ~l~~L~~L~Ls~n~l~~~~~l~~l~~L~~L~Ls~n~l~~-~~---~~~l~~L~~L~Ls~N~l~~~~--~~~l~~L~~L~L 113 (457)
T 3bz5_A 40 QLATLTSLDCHNSSITDMTGIEKLTGLTKLICTSNNITT-LD---LSQNTNLTYLACDSNKLTNLD--VTPLTKLTYLNC 113 (457)
T ss_dssp HHTTCCEEECCSSCCCCCTTGGGCTTCSEEECCSSCCSC-CC---CTTCTTCSEEECCSSCCSCCC--CTTCTTCCEEEC
T ss_pred HcCCCCEEEccCCCcccChhhcccCCCCEEEccCCcCCe-Ec---cccCCCCCEEECcCCCCceee--cCCCCcCCEEEC
Confidence 456778888888877776654467777777777777654 33 467777777777777777664 677777777777
Q ss_pred cCCccCCcccccCCCCCCEEeecCCCCcccChhhcCCCCCCEEEccCCCCCCccCcccccCCCCCcEEEccCCcccceec
Q 003193 288 ENCLVVDVAIIGDLKKLEILSLKHSSIEQLPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGNSFTQWKVE 367 (840)
Q Consensus 288 ~~~~~~~~~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~L~~~~~l~~~p~~~l~~L~~L~~L~l~~~~~~~~~~ 367 (840)
++|.++..+ ++++++|++|++++|+++.+| ++++++|++|++++|..++.++ ++.+++|++|++++|.+..
T Consensus 114 ~~N~l~~l~-~~~l~~L~~L~l~~N~l~~l~--l~~l~~L~~L~l~~n~~~~~~~---~~~l~~L~~L~ls~n~l~~--- 184 (457)
T 3bz5_A 114 DTNKLTKLD-VSQNPLLTYLNCARNTLTEID--VSHNTQLTELDCHLNKKITKLD---VTPQTQLTTLDCSFNKITE--- 184 (457)
T ss_dssp CSSCCSCCC-CTTCTTCCEEECTTSCCSCCC--CTTCTTCCEEECTTCSCCCCCC---CTTCTTCCEEECCSSCCCC---
T ss_pred CCCcCCeec-CCCCCcCCEEECCCCccceec--cccCCcCCEEECCCCCcccccc---cccCCcCCEEECCCCccce---
Confidence 777776632 677777777777777777764 6677777777777765666552 5667777777777765432
Q ss_pred CCCCCCcccccCCCCCCeEEEecCCCC
Q 003193 368 GQSNASLGELKQLSRLTTLEVHIPDAQ 394 (840)
Q Consensus 368 ~~~~~~l~~l~~l~~L~~L~l~~~~~~ 394 (840)
+. +..+++|+.|++++|.+.
T Consensus 185 ------l~-l~~l~~L~~L~l~~N~l~ 204 (457)
T 3bz5_A 185 ------LD-VSQNKLLNRLNCDTNNIT 204 (457)
T ss_dssp ------CC-CTTCTTCCEEECCSSCCS
T ss_pred ------ec-cccCCCCCEEECcCCcCC
Confidence 11 455666666666665544
|
| >3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=3.5e-25 Score=247.38 Aligned_cols=174 Identities=18% Similarity=0.221 Sum_probs=105.8
Q ss_pred EEEeccCCcccCCcccCCCcceeEeeccCccccCCCchhhcCCCCCcEEEcCCCCCC-CC-ChhhcCCCCCCEEEccCCc
Q 003193 214 AISIPFRGIYELPERLGFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFH-SL-PSSLGCLINLRTLSLENCL 291 (840)
Q Consensus 214 ~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~-~l-p~~l~~l~~L~~L~L~~~~ 291 (840)
.++.+++.+..+|. -.+++++|++++|.+....|.. |.++++|++|++++|.+. .+ |..|.++++|++|++++|.
T Consensus 14 ~~~c~~~~l~~lp~--l~~~l~~L~Ls~n~i~~~~~~~-~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~ 90 (455)
T 3v47_A 14 NAICINRGLHQVPE--LPAHVNYVDLSLNSIAELNETS-FSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQ 90 (455)
T ss_dssp EEECCSSCCSSCCC--CCTTCCEEECCSSCCCEECTTT-TSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCT
T ss_pred ccCcCCCCcccCCC--CCCccCEEEecCCccCcCChhH-hccCccccEEECcCCcccceECcccccccccCCEEeCCCCc
Confidence 45555566666665 2356777777777665433433 467777777777777765 33 4557777777777777777
Q ss_pred cCC--cccccCCCCCCEEeecCCCCcc-cChh--hcCCCCCCEEEccCCCCCCcc-CcccccCCCCCcEEEccCCcccce
Q 003193 292 VVD--VAIIGDLKKLEILSLKHSSIEQ-LPRE--IGQLTCLKLLDLSNCSKLKEI-RPNVISNLTRLEELYMGNSFTQWK 365 (840)
Q Consensus 292 ~~~--~~~i~~L~~L~~L~l~~~~l~~-lp~~--i~~L~~L~~L~L~~~~~l~~~-p~~~l~~L~~L~~L~l~~~~~~~~ 365 (840)
+.. |..++++++|++|++++|.++. +|.. ++++++|++|++++ +.+..+ |...++++++|++|++++|.+...
T Consensus 91 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~ 169 (455)
T 3v47_A 91 FLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRD-NNIKKIQPASFFLNMRRFHVLDLTFNKVKSI 169 (455)
T ss_dssp TCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCS-SBCCSCCCCGGGGGCTTCCEEECTTCCBSCC
T ss_pred cCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCC-CccCccCcccccCCCCcccEEeCCCCccccc
Confidence 665 5667777777777777777764 3333 67777777777777 345544 333366777777777777755432
Q ss_pred ecCCCCCCcccccCCCCCCeEEEecCCCCCC
Q 003193 366 VEGQSNASLGELKQLSRLTTLEVHIPDAQVM 396 (840)
Q Consensus 366 ~~~~~~~~l~~l~~l~~L~~L~l~~~~~~~~ 396 (840)
.+ ..+..+. ..+|+.|+++.+.+..+
T Consensus 170 ~~----~~l~~l~-~~~L~~L~l~~n~l~~~ 195 (455)
T 3v47_A 170 CE----EDLLNFQ-GKHFTLLRLSSITLQDM 195 (455)
T ss_dssp CT----TTSGGGT-TCEEEEEECTTCBCTTC
T ss_pred Ch----hhhhccc-cccccccccccCccccc
Confidence 21 1112221 13456666665554433
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A | Back alignment and structure |
|---|
Probab=99.93 E-value=5.5e-25 Score=243.35 Aligned_cols=404 Identities=16% Similarity=0.120 Sum_probs=204.8
Q ss_pred cCCCcEEEeccCCcccCCccc-CCCcceeEeeccCccccCCCchhhcCCCC-------------CcEEEcCCCCCCCCCh
Q 003193 209 DEAPTAISIPFRGIYELPERL-GFLKLKLFLFFTENLSLQIPDPFFEGMTE-------------LRVLDLTGFRFHSLPS 274 (840)
Q Consensus 209 ~~~l~~L~l~~~~~~~l~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~-------------Lr~L~l~~~~~~~lp~ 274 (840)
...++.+++++|.++.+|..+ .+++|++|++++|.+.+.+|..+ +++++ +++|++++|.++.+|.
T Consensus 10 ~~~L~~L~l~~n~l~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~-~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~lp~ 88 (454)
T 1jl5_A 10 NTFLQEPLRHSSNLTEMPVEAENVKSKTEYYNAWSEWERNAPPGN-GEQREMAVSRLRDCLDRQAHELELNNLGLSSLPE 88 (454)
T ss_dssp ------------------------CCHHHHHHHHHHHHHTSCTTS-CCCHHHHHHHHHHHHHHTCSEEECTTSCCSCCCS
T ss_pred cccchhhhcccCchhhCChhHhcccchhhhhccCCcccccCCccc-ccchhcchhhhhhhhccCCCEEEecCCccccCCC
Confidence 457888999999998898776 79999999999999888888776 66665 4999999999998886
Q ss_pred hhcCCCCCCEEEccCCccCC-cccccCCCCCCEEeecCCCCcccChhhcCCCCCCEEEccCCCCCCccCcccccCCCCCc
Q 003193 275 SLGCLINLRTLSLENCLVVD-VAIIGDLKKLEILSLKHSSIEQLPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLE 353 (840)
Q Consensus 275 ~l~~l~~L~~L~L~~~~~~~-~~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~L~~~~~l~~~p~~~l~~L~~L~ 353 (840)
. .++|++|++++|.++. |.. +.+|++|++++|.++.+|.. .++|++|++++ +.+..+| . ++++++|+
T Consensus 89 ~---~~~L~~L~l~~n~l~~lp~~---~~~L~~L~l~~n~l~~l~~~---~~~L~~L~L~~-n~l~~lp-~-~~~l~~L~ 156 (454)
T 1jl5_A 89 L---PPHLESLVASCNSLTELPEL---PQSLKSLLVDNNNLKALSDL---PPLLEYLGVSN-NQLEKLP-E-LQNSSFLK 156 (454)
T ss_dssp C---CTTCSEEECCSSCCSSCCCC---CTTCCEEECCSSCCSCCCSC---CTTCCEEECCS-SCCSSCC-C-CTTCTTCC
T ss_pred C---cCCCCEEEccCCcCCccccc---cCCCcEEECCCCccCcccCC---CCCCCEEECcC-CCCCCCc-c-cCCCCCCC
Confidence 3 4789999999999888 432 47899999999998887742 27899999998 5777788 3 89999999
Q ss_pred EEEccCCcccceecCCCCCCcccccCCCCCCeEEEecCCCCCCCCcccccCcceEEEEEcCccCCCCCccccceEEEeeC
Q 003193 354 ELYMGNSFTQWKVEGQSNASLGELKQLSRLTTLEVHIPDAQVMPQDLVFVELERFRICIGDVWSWSDGYETSKTLKLQLN 433 (840)
Q Consensus 354 ~L~l~~~~~~~~~~~~~~~~l~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~l~~~ 433 (840)
+|++++|.+.. ++ . ...+|+.|++++|.+..++....+++|+.| +++++
T Consensus 157 ~L~l~~N~l~~-lp--------~--~~~~L~~L~L~~n~l~~l~~~~~l~~L~~L--------------------~l~~N 205 (454)
T 1jl5_A 157 IIDVDNNSLKK-LP--------D--LPPSLEFIAAGNNQLEELPELQNLPFLTAI--------------------YADNN 205 (454)
T ss_dssp EEECCSSCCSC-CC--------C--CCTTCCEEECCSSCCSSCCCCTTCTTCCEE--------------------ECCSS
T ss_pred EEECCCCcCcc-cC--------C--CcccccEEECcCCcCCcCccccCCCCCCEE--------------------ECCCC
Confidence 99999987642 11 1 124889999998887766532244444444 44443
Q ss_pred CCccchhhHHHHHhcccceeeccccccccccccccchhhcccccEEEeecCCCeEEEEeCCCccccccccceeecccccc
Q 003193 434 NSTYLGYGMKMLLKRTEDLHLDELAGFKNVVHELDDEEGFARLRHLHVHNGPEILHILNSDGRVGTFPLLESLFLHNLIN 513 (840)
Q Consensus 434 ~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~~~~ 513 (840)
....+|.. .++|+.|++++|... .++ .+ +.+++|++|++++|. +..++ ..+++|++|+++++ .
T Consensus 206 ~l~~l~~~----~~~L~~L~l~~n~l~-~lp-~~---~~l~~L~~L~l~~N~-l~~l~------~~~~~L~~L~l~~N-~ 268 (454)
T 1jl5_A 206 SLKKLPDL----PLSLESIVAGNNILE-ELP-EL---QNLPFLTTIYADNNL-LKTLP------DLPPSLEALNVRDN-Y 268 (454)
T ss_dssp CCSSCCCC----CTTCCEEECCSSCCS-SCC-CC---TTCTTCCEEECCSSC-CSSCC------SCCTTCCEEECCSS-C
T ss_pred cCCcCCCC----cCcccEEECcCCcCC-ccc-cc---CCCCCCCEEECCCCc-CCccc------ccccccCEEECCCC-c
Confidence 33333322 246777777776543 444 24 567777777777764 11111 13466777777664 2
Q ss_pred cccccccccccCCCCcccCCccEEEEecCCCcccccchhHHhhcccccEEEEecccccceeeccccccccccCCcccccc
Q 003193 514 LEKVCDGKVRLNEDDKSFSNLRIIKVEGCHRVKHLFPFSLVKNLLQLQKVKVTDCTNLKLIVGKESENSAHKNGSISGVY 593 (840)
Q Consensus 514 L~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~l~~ 593 (840)
++.++ ..+++|+.|++++| .++.++.. .++|+.|++++|. +..++ .
T Consensus 269 l~~l~----------~~~~~L~~L~ls~N-~l~~l~~~-----~~~L~~L~l~~N~-l~~i~-----------------~ 314 (454)
T 1jl5_A 269 LTDLP----------ELPQSLTFLDVSEN-IFSGLSEL-----PPNLYYLNASSNE-IRSLC-----------------D 314 (454)
T ss_dssp CSCCC----------CCCTTCCEEECCSS-CCSEESCC-----CTTCCEEECCSSC-CSEEC-----------------C
T ss_pred ccccC----------cccCcCCEEECcCC-ccCcccCc-----CCcCCEEECcCCc-CCccc-----------------C
Confidence 33321 12356667776664 24443211 2466666666543 22221 1
Q ss_pred c-cccceeecccCcccccccCCCCCCCccCCCCCcccccCCCCCcccccccccccCCcceEecccccchhhcccCCcccc
Q 003193 594 F-RKLHFLKLQHLPQLTSSGFDLETPTNTQGSNPGIIAEGDPKDFTSLFNERVVFPSLKKLKLSSINVEKIWLNSFSAIE 672 (840)
Q Consensus 594 l-~~L~~L~l~~c~~L~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~l~~~~~~~~~~~~ 672 (840)
+ ++|++|+++++. +..++. .+++|++|++++|.++.+|.
T Consensus 315 ~~~~L~~L~Ls~N~-l~~lp~--------------------------------~~~~L~~L~L~~N~l~~lp~------- 354 (454)
T 1jl5_A 315 LPPSLEELNVSNNK-LIELPA--------------------------------LPPRLERLIASFNHLAEVPE------- 354 (454)
T ss_dssp CCTTCCEEECCSSC-CSCCCC--------------------------------CCTTCCEEECCSSCCSCCCC-------
T ss_pred CcCcCCEEECCCCc-cccccc--------------------------------cCCcCCEEECCCCccccccc-------
Confidence 2 356666665532 222221 13566666666665555443
Q ss_pred ccCCCceEEEecccCCcceeechhhHhhhcccceeeecccccchhhhccCcccccCccccccccccccccccCCcceeec
Q 003193 673 SWGKNLTKLTVEKCGRLKFLFSSSMVNGLEQLQQLDISHCKSMNEVINTRVGRDDNMIEMVFPKLVSLQLSHLPKLTRFG 752 (840)
Q Consensus 673 ~~l~~L~~L~i~~C~~L~~l~~~~~~~~l~sL~~L~i~~C~~L~~i~~~~~~~~~~~~~~~l~sL~~L~i~~c~~L~~l~ 752 (840)
.+++|+.|+++++ +++.++.. ..++..|.. +.....+ |. .+++|+.|++++++ ++.++
T Consensus 355 -~l~~L~~L~L~~N-~l~~l~~i-----p~~l~~L~~--n~~~~~i---~~---------~~~~L~~L~ls~N~-l~~~~ 412 (454)
T 1jl5_A 355 -LPQNLKQLHVEYN-PLREFPDI-----PESVEDLRM--NSHLAEV---PE---------LPQNLKQLHVETNP-LREFP 412 (454)
T ss_dssp -CCTTCCEEECCSS-CCSSCCCC-----CTTCCEEEC--CC---------------------------------------
T ss_pred -hhhhccEEECCCC-CCCcCCCC-----hHHHHhhhh--ccccccc---cc---------ccCcCCEEECCCCc-CCccc
Confidence 1256666666544 33332110 011222221 1111222 11 15789999998885 55544
Q ss_pred CCCCccCCCcceEEeccCCCc
Q 003193 753 IGDSVEFPSLCQLQIACCPNL 773 (840)
Q Consensus 753 ~~~~~~l~sL~~L~i~~C~~L 773 (840)
.. .++|+.|.+.+|.--
T Consensus 413 ~i----P~sl~~L~~~~~~~~ 429 (454)
T 1jl5_A 413 DI----PESVEDLRMNSERVV 429 (454)
T ss_dssp ---------------------
T ss_pred cc----hhhHhheeCcCcccC
Confidence 32 267888888887543
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A | Back alignment and structure |
|---|
Probab=99.93 E-value=8.4e-26 Score=249.87 Aligned_cols=151 Identities=23% Similarity=0.215 Sum_probs=83.3
Q ss_pred CcccCCCcceeEeeccCccccCCCchhhcCCCCCcEEEcCCCCCC-CCChhhcCCCCC-------------CEEEccCCc
Q 003193 226 PERLGFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFH-SLPSSLGCLINL-------------RTLSLENCL 291 (840)
Q Consensus 226 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~-~lp~~l~~l~~L-------------~~L~L~~~~ 291 (840)
|+.+..++|++|.+++|.+ +.+|.++ +++++|++|++++|.+. .+|.+++++.+| ++|++++|.
T Consensus 5 p~~~~~~~L~~L~l~~n~l-~~iP~~i-~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~ 82 (454)
T 1jl5_A 5 PRNVSNTFLQEPLRHSSNL-TEMPVEA-ENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLG 82 (454)
T ss_dssp -------------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSC
T ss_pred ccccccccchhhhcccCch-hhCChhH-hcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCc
Confidence 3445667788888888877 6777765 78888888888888776 678888777764 777777777
Q ss_pred cCC-cccccCCCCCCEEeecCCCCcccChhhcCCCCCCEEEccCCCCCCccCcccccCCCCCcEEEccCCcccceecCCC
Q 003193 292 VVD-VAIIGDLKKLEILSLKHSSIEQLPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGNSFTQWKVEGQS 370 (840)
Q Consensus 292 ~~~-~~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~L~~~~~l~~~p~~~l~~L~~L~~L~l~~~~~~~~~~~~~ 370 (840)
++. |. + .++|++|++++|.++.+|.. +++|++|++++ +.+..+|.. .++|++|++++|.+..
T Consensus 83 l~~lp~-~--~~~L~~L~l~~n~l~~lp~~---~~~L~~L~l~~-n~l~~l~~~----~~~L~~L~L~~n~l~~------ 145 (454)
T 1jl5_A 83 LSSLPE-L--PPHLESLVASCNSLTELPEL---PQSLKSLLVDN-NNLKALSDL----PPLLEYLGVSNNQLEK------ 145 (454)
T ss_dssp CSCCCS-C--CTTCSEEECCSSCCSSCCCC---CTTCCEEECCS-SCCSCCCSC----CTTCCEEECCSSCCSS------
T ss_pred cccCCC-C--cCCCCEEEccCCcCCccccc---cCCCcEEECCC-CccCcccCC----CCCCCEEECcCCCCCC------
Confidence 776 33 2 36777778877777777753 36777777777 456655431 1577777777775531
Q ss_pred CCCcccccCCCCCCeEEEecCCCCCCCC
Q 003193 371 NASLGELKQLSRLTTLEVHIPDAQVMPQ 398 (840)
Q Consensus 371 ~~~l~~l~~l~~L~~L~l~~~~~~~~~~ 398 (840)
+..+.++++|+.|++++|.+..+|.
T Consensus 146 ---lp~~~~l~~L~~L~l~~N~l~~lp~ 170 (454)
T 1jl5_A 146 ---LPELQNSSFLKIIDVDNNSLKKLPD 170 (454)
T ss_dssp ---CCCCTTCTTCCEEECCSSCCSCCCC
T ss_pred ---CcccCCCCCCCEEECCCCcCcccCC
Confidence 1246677777777777776655443
|
| >2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=1.3e-26 Score=262.60 Aligned_cols=174 Identities=13% Similarity=0.096 Sum_probs=132.4
Q ss_pred CCceEEccCCCHHHHHHHHHHHhCCCCCCCchhhHHHHHHHHhCCCchhHHHHHHHhcCCCHHHHHHHHHHhhcCCCCCc
Q 003193 6 YSEDFLDWLLSNEEASHLFEKIVGHSAKKSDFETIGVEIVAKCGGLPIAIKTIANALKNKSPRIWKDAVNQLSNSNPRKI 85 (840)
Q Consensus 6 ~~~~~~l~~L~~~~s~~Lf~~~a~~~~~~~~~~~i~~~i~~~c~GlPLai~~~g~~L~~~~~~~W~~~l~~l~~~~~~~~ 85 (840)
+..+|+|++|+++|||+||.++||....++++++++++|+++|+|+||||+++|+.|+.++ .+|.+.+.+..+..
T Consensus 284 ~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~I~~~c~GlPLAl~~~g~~l~~~~-w~~~~~l~~~l~~~---- 358 (549)
T 2a5y_B 284 TCEFIEVTSLEIDECYDFLEAYGMPMPVGEKEEDVLNKTIELSSGNPATLMMFFKSCEPKT-FEKMAQLNNKLESR---- 358 (549)
T ss_dssp CEEEEECCCCCHHHHHHHHHHTSCCCC--CHHHHHHHHHHHHHTTCHHHHHHHHTTCCSSS-HHHHHHHHHHHHHH----
T ss_pred CCeEEECCCCCHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHhCCChHHHHHHHHHhccch-HHHHHHhHHHhhcc----
Confidence 4468999999999999999999996555688999999999999999999999999998774 23333333211100
Q ss_pred ccccccccceeecccccCchhhhhHHH-----------hccCCCCCCccCHHHHHHHHhhc--ccccccchHHHHHHHHH
Q 003193 86 QGMDADLSSIELSYEFLKCKEVKSLFQ-----------LCGLLKDGSRIAVDDLLRYVMGL--RLLTNADTLEAARNRVH 152 (840)
Q Consensus 86 ~~~~~~~~~l~lSY~~L~~~~lk~cfl-----------~~~~fp~~~~i~~~~li~~wia~--gfi~~~~~~~~~~~~~~ 152 (840)
......+++++||++||.+ +|.||+ |||+||+|+.|+ +++|+|+ ||+.........++.+.
T Consensus 359 -~~~~i~~~l~~Sy~~L~~~-lk~~f~~Ls~~er~l~~~ls~fp~~~~i~----i~~w~a~~~G~i~~~~~~~~~~~~~~ 432 (549)
T 2a5y_B 359 -GLVGVECITPYSYKSLAMA-LQRCVEVLSDEDRSALAFAVVMPPGVDIP----VKLWSCVIPVDICSNEEEQLDDEVAD 432 (549)
T ss_dssp -CSSTTCCCSSSSSSSHHHH-HHHHHHTSCHHHHHHTTGGGSSCTTCCEE----HHHHHHHSCC-------CCCTHHHHH
T ss_pred -cHHHHHHHHhcccccccHH-HHHHHhccchhhhhHhhheeeeCCCCeee----eeeeeeeccceeccCCCCCCHHHHHH
Confidence 1122288999999999998 999999 999999999998 8999999 99975421111233334
Q ss_pred HHHHHHhhccccccCC--CCCceEeehhHHHHHHHHHhhce
Q 003193 153 TLIDNLKSASLLFDGD--SEDHAKMHRIIHAIAVSIAAEKL 191 (840)
Q Consensus 153 ~~~~~L~~~~l~~~~~--~~~~~~mhdli~~l~~~i~~~e~ 191 (840)
++++|+++||++... ....|+|||+||++|+.++++++
T Consensus 433 -~l~~L~~rsLl~~~~~~~~~~~~mHdlv~~~a~~~~~~~~ 472 (549)
T 2a5y_B 433 -RLKRLSKRGALLSGKRMPVLTFKIDHIIHMFLKHVVDAQT 472 (549)
T ss_dssp -HHHHTTTBSSCSEEECSSSCEEECCHHHHHHHHTTSCTHH
T ss_pred -HHHHHHHcCCeeEecCCCceEEEeChHHHHHHHHHHHHHH
Confidence 899999999998753 34679999999999999887765
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} | Back alignment and structure |
|---|
Probab=99.92 E-value=6.2e-24 Score=228.02 Aligned_cols=304 Identities=16% Similarity=0.184 Sum_probs=193.8
Q ss_pred hccCCCcEEEeccCCcccCCcccCCCcceeEeeccCccccCCCchhhcCCCCCcEEEcCCCCCCCCChhhcCCCCCCEEE
Q 003193 207 KIDEAPTAISIPFRGIYELPERLGFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPSSLGCLINLRTLS 286 (840)
Q Consensus 207 ~~~~~l~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~l~~l~~L~~L~ 286 (840)
...+++++++++++.+..++....+++|++|++++|.+. .++. +.++++|++|++++|.++.+| .+.++++|++|+
T Consensus 41 ~~l~~L~~L~l~~~~i~~~~~~~~~~~L~~L~l~~n~i~-~~~~--~~~l~~L~~L~L~~n~i~~~~-~~~~l~~L~~L~ 116 (347)
T 4fmz_A 41 EELESITKLVVAGEKVASIQGIEYLTNLEYLNLNGNQIT-DISP--LSNLVKLTNLYIGTNKITDIS-ALQNLTNLRELY 116 (347)
T ss_dssp HHHTTCSEEECCSSCCCCCTTGGGCTTCCEEECCSSCCC-CCGG--GTTCTTCCEEECCSSCCCCCG-GGTTCTTCSEEE
T ss_pred hhcccccEEEEeCCccccchhhhhcCCccEEEccCCccc-cchh--hhcCCcCCEEEccCCcccCch-HHcCCCcCCEEE
Confidence 456677888888877776665446677777777766654 2333 466777777777777766654 466777777777
Q ss_pred ccCCccCCcccccCCCCCCEEeecCCCCcccChhhcCCCCCCEEEccCCCCCCccCcccccCCCCCcEEEccCCccccee
Q 003193 287 LENCLVVDVAIIGDLKKLEILSLKHSSIEQLPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGNSFTQWKV 366 (840)
Q Consensus 287 L~~~~~~~~~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~L~~~~~l~~~p~~~l~~L~~L~~L~l~~~~~~~~~ 366 (840)
+++|.+...+.+.++++|++|++++|.....+..+..+++|++|++++ +.+..++. ++.+++|++|++++|.+..
T Consensus 117 l~~n~i~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~-~~~~~~~~--~~~l~~L~~L~l~~n~l~~-- 191 (347)
T 4fmz_A 117 LNEDNISDISPLANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTE-SKVKDVTP--IANLTDLYSLSLNYNQIED-- 191 (347)
T ss_dssp CTTSCCCCCGGGTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCS-SCCCCCGG--GGGCTTCSEEECTTSCCCC--
T ss_pred CcCCcccCchhhccCCceeEEECCCCCCcccccchhhCCCCcEEEecC-CCcCCchh--hccCCCCCEEEccCCcccc--
Confidence 777776663336677777777777763333333466777777777776 34555544 5666777777776665431
Q ss_pred cCCCCCCcccccCCCCCCeEEEecCCCCCCCCcccccCcceEEEEEcCccCCCCCccccceEEEeeCCCccchhhHHHHH
Q 003193 367 EGQSNASLGELKQLSRLTTLEVHIPDAQVMPQDLVFVELERFRICIGDVWSWSDGYETSKTLKLQLNNSTYLGYGMKMLL 446 (840)
Q Consensus 367 ~~~~~~~l~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~l 446 (840)
+..+..+++|+.|+++++.+...+.. ..+
T Consensus 192 -------~~~~~~l~~L~~L~l~~n~l~~~~~~--------------------------------------------~~~ 220 (347)
T 4fmz_A 192 -------ISPLASLTSLHYFTAYVNQITDITPV--------------------------------------------ANM 220 (347)
T ss_dssp -------CGGGGGCTTCCEEECCSSCCCCCGGG--------------------------------------------GGC
T ss_pred -------cccccCCCccceeecccCCCCCCchh--------------------------------------------hcC
Confidence 12255566666666666554432210 114
Q ss_pred hcccceeeccccccccccccccchhhcccccEEEeecCCCeEEEEeCCCccccccccceeecccccccccccccccccCC
Q 003193 447 KRTEDLHLDELAGFKNVVHELDDEEGFARLRHLHVHNGPEILHILNSDGRVGTFPLLESLFLHNLINLEKVCDGKVRLNE 526 (840)
Q Consensus 447 ~~L~~L~L~~~~~~~~~~~~l~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~ 526 (840)
++|+.|++++|.... .+. + ..+++|++|++++|. +.. ......+++|++|+++++ .+..++.
T Consensus 221 ~~L~~L~l~~n~l~~-~~~-~---~~l~~L~~L~l~~n~-l~~----~~~~~~l~~L~~L~l~~n-~l~~~~~------- 282 (347)
T 4fmz_A 221 TRLNSLKIGNNKITD-LSP-L---ANLSQLTWLEIGTNQ-ISD----INAVKDLTKLKMLNVGSN-QISDISV------- 282 (347)
T ss_dssp TTCCEEECCSSCCCC-CGG-G---TTCTTCCEEECCSSC-CCC----CGGGTTCTTCCEEECCSS-CCCCCGG-------
T ss_pred CcCCEEEccCCccCC-Ccc-h---hcCCCCCEEECCCCc-cCC----ChhHhcCCCcCEEEccCC-ccCCChh-------
Confidence 566777777665432 222 3 667888888888875 222 133467788888888875 4444421
Q ss_pred CCcccCCccEEEEecCCCcccccchhHHhhcccccEEEEecccccceeeccccccccccCCccccccccccceeecccCc
Q 003193 527 DDKSFSNLRIIKVEGCHRVKHLFPFSLVKNLLQLQKVKVTDCTNLKLIVGKESENSAHKNGSISGVYFRKLHFLKLQHLP 606 (840)
Q Consensus 527 ~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~c~ 606 (840)
...+++|+.|++++|+ ++..++ ..+..+++|++|++++|+ +..++ .+..+++|++|++.+++
T Consensus 283 -~~~l~~L~~L~L~~n~-l~~~~~-~~l~~l~~L~~L~L~~n~-l~~~~--------------~~~~l~~L~~L~l~~N~ 344 (347)
T 4fmz_A 283 -LNNLSQLNSLFLNNNQ-LGNEDM-EVIGGLTNLTTLFLSQNH-ITDIR--------------PLASLSKMDSADFANQV 344 (347)
T ss_dssp -GGGCTTCSEEECCSSC-CCGGGH-HHHHTCTTCSEEECCSSS-CCCCG--------------GGGGCTTCSEESSSCC-
T ss_pred -hcCCCCCCEEECcCCc-CCCcCh-hHhhccccCCEEEccCCc-ccccc--------------Chhhhhccceeehhhhc
Confidence 4578899999999884 555433 446788999999999986 44332 24478999999998875
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.92 E-value=5e-24 Score=232.57 Aligned_cols=305 Identities=14% Similarity=0.189 Sum_probs=200.1
Q ss_pred cCCCcceeEeeccCccccCCCchhhcCCCCCcEEEcCCCCCCCCC-hhhcCCCCCCEEEccCCccCC--cccccCCCCCC
Q 003193 229 LGFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLP-SSLGCLINLRTLSLENCLVVD--VAIIGDLKKLE 305 (840)
Q Consensus 229 ~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp-~~l~~l~~L~~L~L~~~~~~~--~~~i~~L~~L~ 305 (840)
..+++++.+.+.++.+. .+|..+|.++++|++|++++|.++.+| ..++.+++|++|++++|.+.. +..++++++|+
T Consensus 42 ~~l~~l~~l~l~~~~l~-~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 120 (390)
T 3o6n_A 42 ITLNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLT 120 (390)
T ss_dssp GGGCCCSEEEEESCEES-EECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred cccCCceEEEecCCchh-hCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCC
Confidence 34566777777666544 466666677777777777777777654 367777777777777777766 34567777777
Q ss_pred EEeecCCCCcccChhh-cCCCCCCEEEccCCCCCCccCcccccCCCCCcEEEccCCcccceecCCCCCCcccccCCCCCC
Q 003193 306 ILSLKHSSIEQLPREI-GQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGNSFTQWKVEGQSNASLGELKQLSRLT 384 (840)
Q Consensus 306 ~L~l~~~~l~~lp~~i-~~L~~L~~L~L~~~~~l~~~p~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~l~~L~ 384 (840)
+|++++|.++.+|..+ +++++|++|++++ +.+..+++..++++++|++|++++|.+.. ..+..+++|+
T Consensus 121 ~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~l~~n~l~~----------~~~~~l~~L~ 189 (390)
T 3o6n_A 121 VLVLERNDLSSLPRGIFHNTPKLTTLSMSN-NNLERIEDDTFQATTSLQNLQLSSNRLTH----------VDLSLIPSLF 189 (390)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCCEEECCS-SCCCBCCTTTTSSCTTCCEEECCSSCCSB----------CCGGGCTTCS
T ss_pred EEECCCCccCcCCHHHhcCCCCCcEEECCC-CccCccChhhccCCCCCCEEECCCCcCCc----------cccccccccc
Confidence 7777777777777653 6777777777777 45666665556777777777777765432 1244556677
Q ss_pred eEEEecCCCCCCCCcccccCcceEEEEEcCccCCCCCccccceEEEeeCCCccchhhHHHHHhcccceeecccccccccc
Q 003193 385 TLEVHIPDAQVMPQDLVFVELERFRICIGDVWSWSDGYETSKTLKLQLNNSTYLGYGMKMLLKRTEDLHLDELAGFKNVV 464 (840)
Q Consensus 385 ~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~ 464 (840)
.|++++|.+..++. ...++.++++++.....+... .++|+.|+++++.... .
T Consensus 190 ~L~l~~n~l~~~~~-----------------------~~~L~~L~l~~n~l~~~~~~~---~~~L~~L~l~~n~l~~-~- 241 (390)
T 3o6n_A 190 HANVSYNLLSTLAI-----------------------PIAVEELDASHNSINVVRGPV---NVELTILKLQHNNLTD-T- 241 (390)
T ss_dssp EEECCSSCCSEEEC-----------------------CSSCSEEECCSSCCCEEECCC---CSSCCEEECCSSCCCC-C-
T ss_pred eeecccccccccCC-----------------------CCcceEEECCCCeeeeccccc---cccccEEECCCCCCcc-c-
Confidence 77776665443221 123334444444333333221 3578888888776443 2
Q ss_pred ccccchhhcccccEEEeecCCCeEEEEeCCCccccccccceeecccccccccccccccccCCCCcccCCccEEEEecCCC
Q 003193 465 HELDDEEGFARLRHLHVHNGPEILHILNSDGRVGTFPLLESLFLHNLINLEKVCDGKVRLNEDDKSFSNLRIIKVEGCHR 544 (840)
Q Consensus 465 ~~l~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~ 544 (840)
..+ ..+++|++|++++|. +..+. ......+++|++|+++++ +++.++.. ...+++|+.|++++| .
T Consensus 242 ~~l---~~l~~L~~L~Ls~n~-l~~~~--~~~~~~l~~L~~L~L~~n-~l~~~~~~-------~~~l~~L~~L~L~~n-~ 306 (390)
T 3o6n_A 242 AWL---LNYPGLVEVDLSYNE-LEKIM--YHPFVKMQRLERLYISNN-RLVALNLY-------GQPIPTLKVLDLSHN-H 306 (390)
T ss_dssp GGG---GGCTTCSEEECCSSC-CCEEE--SGGGTTCSSCCEEECCSS-CCCEEECS-------SSCCTTCCEEECCSS-C
T ss_pred HHH---cCCCCccEEECCCCc-CCCcC--hhHccccccCCEEECCCC-cCcccCcc-------cCCCCCCCEEECCCC-c
Confidence 234 678889999998886 33322 233467888999999884 45554321 346899999999987 5
Q ss_pred cccccchhHHhhcccccEEEEecccccceeeccccccccccCCccccccccccceeecccCc
Q 003193 545 VKHLFPFSLVKNLLQLQKVKVTDCTNLKLIVGKESENSAHKNGSISGVYFRKLHFLKLQHLP 606 (840)
Q Consensus 545 L~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~c~ 606 (840)
++.+++. +..+++|++|++++|+ +..+ .+..+++|++|++.+++
T Consensus 307 l~~~~~~--~~~l~~L~~L~L~~N~-i~~~---------------~~~~~~~L~~L~l~~N~ 350 (390)
T 3o6n_A 307 LLHVERN--QPQFDRLENLYLDHNS-IVTL---------------KLSTHHTLKNLTLSHND 350 (390)
T ss_dssp CCCCGGG--HHHHTTCSEEECCSSC-CCCC---------------CCCTTCCCSEEECCSSC
T ss_pred ceecCcc--ccccCcCCEEECCCCc-ccee---------------CchhhccCCEEEcCCCC
Confidence 6777543 5778999999999976 3333 23478999999998875
|
| >3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=1.5e-24 Score=242.34 Aligned_cols=375 Identities=18% Similarity=0.171 Sum_probs=259.0
Q ss_pred cCccchhhhhhccCCCcEEEeccCCcccC-Cccc-CCCcceeEeeccCccccCCCchhhcCCCCCcEEEcCCCCCCCC-C
Q 003193 197 NVADLKEELDKIDEAPTAISIPFRGIYEL-PERL-GFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSL-P 273 (840)
Q Consensus 197 ~~~~~~~~~~~~~~~l~~L~l~~~~~~~l-~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~l-p 273 (840)
.+..+..+|. .++++++|++++|.+..+ |..+ .+++|++|++++|.+...++...|.++++|++|++++|.++.+ |
T Consensus 18 ~~~~l~~lp~-l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~ 96 (455)
T 3v47_A 18 INRGLHQVPE-LPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLET 96 (455)
T ss_dssp CSSCCSSCCC-CCTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECT
T ss_pred CCCCcccCCC-CCCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccCh
Confidence 3445666665 678999999999999776 4444 8999999999999987777777789999999999999999865 8
Q ss_pred hhhcCCCCCCEEEccCCccCC--ccc--ccCCCCCCEEeecCCCCccc-Chh-hcCCCCCCEEEccCCCCCCccCccccc
Q 003193 274 SSLGCLINLRTLSLENCLVVD--VAI--IGDLKKLEILSLKHSSIEQL-PRE-IGQLTCLKLLDLSNCSKLKEIRPNVIS 347 (840)
Q Consensus 274 ~~l~~l~~L~~L~L~~~~~~~--~~~--i~~L~~L~~L~l~~~~l~~l-p~~-i~~L~~L~~L~L~~~~~l~~~p~~~l~ 347 (840)
..++++++|++|++++|.+.. +.. ++++++|++|++++|.++.+ |.. ++++++|++|++++ +.+..+++..+.
T Consensus 97 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~l~ 175 (455)
T 3v47_A 97 GAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTF-NKVKSICEEDLL 175 (455)
T ss_dssp TTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTT-CCBSCCCTTTSG
T ss_pred hhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCC-CcccccChhhhh
Confidence 889999999999999999987 444 99999999999999999977 554 89999999999999 566666555566
Q ss_pred CC--CCCcEEEccCCcccceecCCC-CCCcccccCCCCCCeEEEecCCCCCCCC-c----ccccCcceEEEEEcCccCCC
Q 003193 348 NL--TRLEELYMGNSFTQWKVEGQS-NASLGELKQLSRLTTLEVHIPDAQVMPQ-D----LVFVELERFRICIGDVWSWS 419 (840)
Q Consensus 348 ~L--~~L~~L~l~~~~~~~~~~~~~-~~~l~~l~~l~~L~~L~l~~~~~~~~~~-~----~~~~~L~~L~l~~~~~~~~~ 419 (840)
.+ .+|+.|++++|.+........ ......+..+++|+.|++++|.+..... . ....+|+.+.+..+......
T Consensus 176 ~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 255 (455)
T 3v47_A 176 NFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSS 255 (455)
T ss_dssp GGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCC
T ss_pred ccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccc
Confidence 65 789999999987643221000 0001223456789999999887653221 1 12356666666433221110
Q ss_pred CCccccceEEEeeCCCccchhhHHHHHhcccceeeccccccccccccccchhhcccccEEEeecCCCeEEEEeCCCcccc
Q 003193 420 DGYETSKTLKLQLNNSTYLGYGMKMLLKRTEDLHLDELAGFKNVVHELDDEEGFARLRHLHVHNGPEILHILNSDGRVGT 499 (840)
Q Consensus 420 ~~~~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~ 499 (840)
.....+... ....+. . ...++|+.|+++++......+..+ ..+++|++|++++|. +..+. ......
T Consensus 256 ~~~~~~~~~-----~~~~~~-~--~~~~~L~~L~l~~n~l~~~~~~~~---~~l~~L~~L~Ls~n~-l~~~~--~~~~~~ 321 (455)
T 3v47_A 256 FGHTNFKDP-----DNFTFK-G--LEASGVKTCDLSKSKIFALLKSVF---SHFTDLEQLTLAQNE-INKID--DNAFWG 321 (455)
T ss_dssp TTCCSSCCC-----CTTTTG-G--GTTSCCCEEECCSSCCCEECTTTT---TTCTTCCEEECTTSC-CCEEC--TTTTTT
T ss_pred cchhhhccC-----cccccc-c--ccccCceEEEecCccccccchhhc---ccCCCCCEEECCCCc-ccccC--hhHhcC
Confidence 000000000 000000 0 013578888888887666556556 678889999998886 33321 224467
Q ss_pred ccccceeecccccccccccccccccCCCCcccCCccEEEEecCCCcccccchhHHhhcccccEEEEecccccceeecccc
Q 003193 500 FPLLESLFLHNLINLEKVCDGKVRLNEDDKSFSNLRIIKVEGCHRVKHLFPFSLVKNLLQLQKVKVTDCTNLKLIVGKES 579 (840)
Q Consensus 500 ~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~ 579 (840)
+++|++|+++++ .+..+.... ...+++|++|++++| .++.+++ ..+..+++|++|+++++. +..++..
T Consensus 322 l~~L~~L~Ls~N-~l~~~~~~~------~~~l~~L~~L~Ls~N-~l~~~~~-~~~~~l~~L~~L~L~~N~-l~~~~~~-- 389 (455)
T 3v47_A 322 LTHLLKLNLSQN-FLGSIDSRM------FENLDKLEVLDLSYN-HIRALGD-QSFLGLPNLKELALDTNQ-LKSVPDG-- 389 (455)
T ss_dssp CTTCCEEECCSS-CCCEECGGG------GTTCTTCCEEECCSS-CCCEECT-TTTTTCTTCCEEECCSSC-CSCCCTT--
T ss_pred cccCCEEECCCC-ccCCcChhH------hcCcccCCEEECCCC-cccccCh-hhccccccccEEECCCCc-cccCCHh--
Confidence 888999999885 444443222 346888999999887 4566644 335778899999998864 4444431
Q ss_pred ccccccCCccccccccccceeecccCcccc
Q 003193 580 ENSAHKNGSISGVYFRKLHFLKLQHLPQLT 609 (840)
Q Consensus 580 ~~~~~~~~~~~l~~l~~L~~L~l~~c~~L~ 609 (840)
.+..+++|++|++.+++--.
T Consensus 390 ----------~~~~l~~L~~L~l~~N~l~~ 409 (455)
T 3v47_A 390 ----------IFDRLTSLQKIWLHTNPWDC 409 (455)
T ss_dssp ----------TTTTCTTCCEEECCSSCBCC
T ss_pred ----------HhccCCcccEEEccCCCccc
Confidence 23478899999998876543
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A | Back alignment and structure |
|---|
Probab=99.92 E-value=1.4e-23 Score=234.55 Aligned_cols=327 Identities=19% Similarity=0.212 Sum_probs=241.7
Q ss_pred hhhhh-hccCCCcEEEeccCCcccCCcccCCCcceeEeeccCccccCCCchhhcCCCCCcEEEcCCCCCCCCChhhcCCC
Q 003193 202 KEELD-KIDEAPTAISIPFRGIYELPERLGFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPSSLGCLI 280 (840)
Q Consensus 202 ~~~~~-~~~~~l~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~l~~l~ 280 (840)
..++. ...+++++|++++|.+..++....+++|++|++.+|.+.. ++. +.++++|++|++++|.++.+|. +.+++
T Consensus 59 ~~l~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~l~~n~l~~-~~~--~~~l~~L~~L~L~~n~l~~~~~-~~~l~ 134 (466)
T 1o6v_A 59 KSIDGVEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIAD-ITP--LANLTNLTGLTLFNNQITDIDP-LKNLT 134 (466)
T ss_dssp CCCTTGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCC-CGG--GTTCTTCCEEECCSSCCCCCGG-GTTCT
T ss_pred ccCcchhhhcCCCEEECCCCccCCchhhhccccCCEEECCCCcccc-Chh--hcCCCCCCEEECCCCCCCCChH-HcCCC
Confidence 33344 5678999999999999888875589999999999998764 333 6899999999999999999876 99999
Q ss_pred CCCEEEccCCccCCcccccCCCCCCEEeecCCCCcccChhhcCCCCCCEEEccCCCCCCccCcccccCCCCCcEEEccCC
Q 003193 281 NLRTLSLENCLVVDVAIIGDLKKLEILSLKHSSIEQLPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGNS 360 (840)
Q Consensus 281 ~L~~L~L~~~~~~~~~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~L~~~~~l~~~p~~~l~~L~~L~~L~l~~~ 360 (840)
+|++|++++|.+...+.++++++|++|+++ +.+..++. +.++++|++|++++ +.+..++. +.++++|++|++++|
T Consensus 135 ~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~-~~~~~~~~-~~~l~~L~~L~l~~-n~l~~~~~--l~~l~~L~~L~l~~n 209 (466)
T 1o6v_A 135 NLNRLELSSNTISDISALSGLTSLQQLSFG-NQVTDLKP-LANLTTLERLDISS-NKVSDISV--LAKLTNLESLIATNN 209 (466)
T ss_dssp TCSEEEEEEEEECCCGGGTTCTTCSEEEEE-ESCCCCGG-GTTCTTCCEEECCS-SCCCCCGG--GGGCTTCSEEECCSS
T ss_pred CCCEEECCCCccCCChhhccCCcccEeecC-CcccCchh-hccCCCCCEEECcC-CcCCCChh--hccCCCCCEEEecCC
Confidence 999999999999986679999999999996 45666654 89999999999999 46777754 799999999999998
Q ss_pred cccceecCCCCCCcccccCCCCCCeEEEecCCCCCCCCcccccCcceEEEEEcCccCCCCCccccceEEEeeCCCccchh
Q 003193 361 FTQWKVEGQSNASLGELKQLSRLTTLEVHIPDAQVMPQDLVFVELERFRICIGDVWSWSDGYETSKTLKLQLNNSTYLGY 440 (840)
Q Consensus 361 ~~~~~~~~~~~~~l~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~ 440 (840)
.+.. +..+..+++|+.|++++|.+..++....+++|+.|++. ++.....+.
T Consensus 210 ~l~~---------~~~~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~--------------------~n~l~~~~~ 260 (466)
T 1o6v_A 210 QISD---------ITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLA--------------------NNQISNLAP 260 (466)
T ss_dssp CCCC---------CGGGGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECC--------------------SSCCCCCGG
T ss_pred cccc---------cccccccCCCCEEECCCCCcccchhhhcCCCCCEEECC--------------------CCccccchh
Confidence 7642 12367789999999999988766543355555555554 333333322
Q ss_pred hHHHHHhcccceeeccccccccccccccchhhcccccEEEeecCCCeEEEEeCCCccccccccceeeccccccccccccc
Q 003193 441 GMKMLLKRTEDLHLDELAGFKNVVHELDDEEGFARLRHLHVHNGPEILHILNSDGRVGTFPLLESLFLHNLINLEKVCDG 520 (840)
Q Consensus 441 ~~~~~l~~L~~L~L~~~~~~~~~~~~l~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~ 520 (840)
...+++|+.|++++|.... .+. + ..+++|++|++++|. +.. ......+++|+.|+++++ .+..+.
T Consensus 261 --~~~l~~L~~L~l~~n~l~~-~~~-~---~~l~~L~~L~L~~n~-l~~----~~~~~~l~~L~~L~L~~n-~l~~~~-- 325 (466)
T 1o6v_A 261 --LSGLTKLTELKLGANQISN-ISP-L---AGLTALTNLELNENQ-LED----ISPISNLKNLTYLTLYFN-NISDIS-- 325 (466)
T ss_dssp --GTTCTTCSEEECCSSCCCC-CGG-G---TTCTTCSEEECCSSC-CSC----CGGGGGCTTCSEEECCSS-CCSCCG--
T ss_pred --hhcCCCCCEEECCCCccCc-ccc-c---cCCCccCeEEcCCCc-ccC----chhhcCCCCCCEEECcCC-cCCCch--
Confidence 1225677888887775433 222 3 667888888888875 222 122467788888888876 344332
Q ss_pred ccccCCCCcccCCccEEEEecCCCcccccchhHHhhcccccEEEEecccccceeeccccccccccCCcccccccccccee
Q 003193 521 KVRLNEDDKSFSNLRIIKVEGCHRVKHLFPFSLVKNLLQLQKVKVTDCTNLKLIVGKESENSAHKNGSISGVYFRKLHFL 600 (840)
Q Consensus 521 ~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L 600 (840)
+ ...+++|+.|++++| .++.++ .+..+++|++|++++|.- ..+. .+..+++|+.|
T Consensus 326 --~----~~~l~~L~~L~l~~n-~l~~~~---~l~~l~~L~~L~l~~n~l-~~~~--------------~~~~l~~L~~L 380 (466)
T 1o6v_A 326 --P----VSSLTKLQRLFFYNN-KVSDVS---SLANLTNINWLSAGHNQI-SDLT--------------PLANLTRITQL 380 (466)
T ss_dssp --G----GGGCTTCCEEECCSS-CCCCCG---GGTTCTTCCEEECCSSCC-CBCG--------------GGTTCTTCCEE
T ss_pred --h----hccCccCCEeECCCC-ccCCch---hhccCCCCCEEeCCCCcc-Cccc--------------hhhcCCCCCEE
Confidence 1 356788888888887 466553 346788888888888753 2222 23478888888
Q ss_pred ecccCc
Q 003193 601 KLQHLP 606 (840)
Q Consensus 601 ~l~~c~ 606 (840)
++.+|+
T Consensus 381 ~l~~n~ 386 (466)
T 1o6v_A 381 GLNDQA 386 (466)
T ss_dssp ECCCEE
T ss_pred eccCCc
Confidence 888875
|
| >3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.91 E-value=1.7e-23 Score=231.67 Aligned_cols=314 Identities=20% Similarity=0.180 Sum_probs=205.8
Q ss_pred CCCcceeEeeccCccccCCCchhhcCCCCCcEEEcCCCCCCCCChhhcCCCCCCEEEccCCccCCcccccCCCCCCEEee
Q 003193 230 GFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPSSLGCLINLRTLSLENCLVVDVAIIGDLKKLEILSL 309 (840)
Q Consensus 230 ~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~~i~~L~~L~~L~l 309 (840)
.+++|++|++++|.+.+ +| . +..+++|++|++++|.++.+| ++.+++|++|++++|.++..+ ++++++|++|++
T Consensus 40 ~l~~L~~L~Ls~n~l~~-~~-~-l~~l~~L~~L~Ls~n~l~~~~--~~~l~~L~~L~Ls~N~l~~~~-~~~l~~L~~L~L 113 (457)
T 3bz5_A 40 QLATLTSLDCHNSSITD-MT-G-IEKLTGLTKLICTSNNITTLD--LSQNTNLTYLACDSNKLTNLD-VTPLTKLTYLNC 113 (457)
T ss_dssp HHTTCCEEECCSSCCCC-CT-T-GGGCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSCCC-CTTCTTCCEEEC
T ss_pred HcCCCCEEEccCCCccc-Ch-h-hcccCCCCEEEccCCcCCeEc--cccCCCCCEEECcCCCCceee-cCCCCcCCEEEC
Confidence 57888999998888764 45 3 578899999999999988886 888899999999999888853 888999999999
Q ss_pred cCCCCcccChhhcCCCCCCEEEccCCCCCCccCcccccCCCCCcEEEccCCcccceecCCCCCCcccccCCCCCCeEEEe
Q 003193 310 KHSSIEQLPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGNSFTQWKVEGQSNASLGELKQLSRLTTLEVH 389 (840)
Q Consensus 310 ~~~~l~~lp~~i~~L~~L~~L~L~~~~~l~~~p~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~l~~L~~L~l~ 389 (840)
++|+++.+| ++++++|++|++++ +.+..++ ++++++|++|++++|..... + .+..+++|+.|+++
T Consensus 114 ~~N~l~~l~--~~~l~~L~~L~l~~-N~l~~l~---l~~l~~L~~L~l~~n~~~~~--------~-~~~~l~~L~~L~ls 178 (457)
T 3bz5_A 114 DTNKLTKLD--VSQNPLLTYLNCAR-NTLTEID---VSHNTQLTELDCHLNKKITK--------L-DVTPQTQLTTLDCS 178 (457)
T ss_dssp CSSCCSCCC--CTTCTTCCEEECTT-SCCSCCC---CTTCTTCCEEECTTCSCCCC--------C-CCTTCTTCCEEECC
T ss_pred CCCcCCeec--CCCCCcCCEEECCC-Cccceec---cccCCcCCEEECCCCCcccc--------c-ccccCCcCCEEECC
Confidence 999888886 88889999999988 5677764 67888999999988843211 1 36677888888888
Q ss_pred cCCCCCCCCcccccCcceEEEEEcCccCCCCCccccceEEEeeCCCccchhhHHHHHhcccceeeccccccccccccccc
Q 003193 390 IPDAQVMPQDLVFVELERFRICIGDVWSWSDGYETSKTLKLQLNNSTYLGYGMKMLLKRTEDLHLDELAGFKNVVHELDD 469 (840)
Q Consensus 390 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~ 469 (840)
+|.+..++ ... +++|+.|++++|.... + .+
T Consensus 179 ~n~l~~l~-l~~--------------------------------------------l~~L~~L~l~~N~l~~-~--~l-- 208 (457)
T 3bz5_A 179 FNKITELD-VSQ--------------------------------------------NKLLNRLNCDTNNITK-L--DL-- 208 (457)
T ss_dssp SSCCCCCC-CTT--------------------------------------------CTTCCEEECCSSCCSC-C--CC--
T ss_pred CCccceec-ccc--------------------------------------------CCCCCEEECcCCcCCe-e--cc--
Confidence 87765543 111 2344445554443222 1 12
Q ss_pred hhhcccccEEEeecCCCeEEEEeCCCccccccccceeecccccccccccccccccCCCCcccCCccEEEEecCCCccccc
Q 003193 470 EEGFARLRHLHVHNGPEILHILNSDGRVGTFPLLESLFLHNLINLEKVCDGKVRLNEDDKSFSNLRIIKVEGCHRVKHLF 549 (840)
Q Consensus 470 ~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~ 549 (840)
+.+++|++|++++|. +..+ + ...+++|+.|+++++ .++.++ .+.+++|+.|.+++
T Consensus 209 -~~l~~L~~L~Ls~N~-l~~i----p-~~~l~~L~~L~l~~N-~l~~~~---------~~~l~~L~~L~l~~-------- 263 (457)
T 3bz5_A 209 -NQNIQLTFLDCSSNK-LTEI----D-VTPLTQLTYFDCSVN-PLTELD---------VSTLSKLTTLHCIQ-------- 263 (457)
T ss_dssp -TTCTTCSEEECCSSC-CSCC----C-CTTCTTCSEEECCSS-CCSCCC---------CTTCTTCCEEECTT--------
T ss_pred -ccCCCCCEEECcCCc-cccc----C-ccccCCCCEEEeeCC-cCCCcC---------HHHCCCCCEEeccC--------
Confidence 456666666666664 1111 1 345566666666653 333221 33456666665433
Q ss_pred chhHHhhcccccEEEEecccccceeeccccccccccCCccccccccccceeecccCcccccccCCCCCCCccCCCCCccc
Q 003193 550 PFSLVKNLLQLQKVKVTDCTNLKLIVGKESENSAHKNGSISGVYFRKLHFLKLQHLPQLTSSGFDLETPTNTQGSNPGII 629 (840)
Q Consensus 550 ~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~c~~L~~~~~~~~~~~~~~~~~l~~l 629 (840)
.+|+.|++++|..+..++. ..+++|+.|++++|+.+..++... ..++.+
T Consensus 264 --------n~L~~L~l~~n~~~~~~~~---------------~~l~~L~~L~Ls~n~~l~~l~~~~--------~~L~~L 312 (457)
T 3bz5_A 264 --------TDLLEIDLTHNTQLIYFQA---------------EGCRKIKELDVTHNTQLYLLDCQA--------AGITEL 312 (457)
T ss_dssp --------CCCSCCCCTTCTTCCEEEC---------------TTCTTCCCCCCTTCTTCCEEECTT--------CCCSCC
T ss_pred --------CCCCEEECCCCccCCcccc---------------cccccCCEEECCCCcccceeccCC--------CcceEe
Confidence 2455556666665554432 256777777777777666655321 122222
Q ss_pred ccCCCCCcccccccccccCCcceEecccccchhhcccCCccccccCCCceEEEecccCCcce
Q 003193 630 AEGDPKDFTSLFNERVVFPSLKKLKLSSINVEKIWLNSFSAIESWGKNLTKLTVEKCGRLKF 691 (840)
Q Consensus 630 ~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~l~~~~~~~~~~~~~~l~~L~~L~i~~C~~L~~ 691 (840)
. +..+++|++|++++|+++.++ ...+++|+.|+++++ +++.
T Consensus 313 ~-------------l~~~~~L~~L~L~~N~l~~l~-------l~~l~~L~~L~l~~N-~l~~ 353 (457)
T 3bz5_A 313 D-------------LSQNPKLVYLYLNNTELTELD-------VSHNTKLKSLSCVNA-HIQD 353 (457)
T ss_dssp C-------------CTTCTTCCEEECTTCCCSCCC-------CTTCTTCSEEECCSS-CCCB
T ss_pred c-------------hhhcccCCEEECCCCcccccc-------cccCCcCcEEECCCC-CCCC
Confidence 1 123578888888888777653 245688888888654 4554
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} | Back alignment and structure |
|---|
Probab=99.91 E-value=3.9e-23 Score=221.81 Aligned_cols=287 Identities=17% Similarity=0.232 Sum_probs=221.1
Q ss_pred chhhhh-hccCCCcEEEeccCCcccCCcccCCCcceeEeeccCccccCCCchhhcCCCCCcEEEcCCCCCCCCChhhcCC
Q 003193 201 LKEELD-KIDEAPTAISIPFRGIYELPERLGFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPSSLGCL 279 (840)
Q Consensus 201 ~~~~~~-~~~~~l~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~l~~l 279 (840)
+..++. ...+++++|++++|.+..++....+++|++|++++|.+.. ++ .+.++++|++|++++|.+..+|. +..+
T Consensus 56 i~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~l~~L~~L~L~~n~i~~-~~--~~~~l~~L~~L~l~~n~i~~~~~-~~~l 131 (347)
T 4fmz_A 56 VASIQGIEYLTNLEYLNLNGNQITDISPLSNLVKLTNLYIGTNKITD-IS--ALQNLTNLRELYLNEDNISDISP-LANL 131 (347)
T ss_dssp CCCCTTGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCC-CG--GGTTCTTCSEEECTTSCCCCCGG-GTTC
T ss_pred cccchhhhhcCCccEEEccCCccccchhhhcCCcCCEEEccCCcccC-ch--HHcCCCcCCEEECcCCcccCchh-hccC
Confidence 344444 5688999999999999888886689999999999998763 43 36899999999999999999876 9999
Q ss_pred CCCCEEEccCCccCC-cccccCCCCCCEEeecCCCCcccChhhcCCCCCCEEEccCCCCCCccCcccccCCCCCcEEEcc
Q 003193 280 INLRTLSLENCLVVD-VAIIGDLKKLEILSLKHSSIEQLPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMG 358 (840)
Q Consensus 280 ~~L~~L~L~~~~~~~-~~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~L~~~~~l~~~p~~~l~~L~~L~~L~l~ 358 (840)
++|++|++++|.... +..++++++|++|++++|.+..++. +..+++|++|++++ +.+..++. +..+++|+.|+++
T Consensus 132 ~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~l~~L~~L~l~~-n~l~~~~~--~~~l~~L~~L~l~ 207 (347)
T 4fmz_A 132 TKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVTP-IANLTDLYSLSLNY-NQIEDISP--LASLTSLHYFTAY 207 (347)
T ss_dssp TTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSSCCCCCGG-GGGCTTCSEEECTT-SCCCCCGG--GGGCTTCCEEECC
T ss_pred CceeEEECCCCCCcccccchhhCCCCcEEEecCCCcCCchh-hccCCCCCEEEccC-Cccccccc--ccCCCccceeecc
Confidence 999999999996554 7779999999999999999998876 89999999999999 57777776 7899999999999
Q ss_pred CCcccceecCCCCCCcccccCCCCCCeEEEecCCCCCCCCcccccCcceEEEEEcCccCCCCCccccceEEEeeCCCccc
Q 003193 359 NSFTQWKVEGQSNASLGELKQLSRLTTLEVHIPDAQVMPQDLVFVELERFRICIGDVWSWSDGYETSKTLKLQLNNSTYL 438 (840)
Q Consensus 359 ~~~~~~~~~~~~~~~l~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~l~~~~~~~~ 438 (840)
+|.+.. +..+..+++|+.|++++|.+...+....
T Consensus 208 ~n~l~~---------~~~~~~~~~L~~L~l~~n~l~~~~~~~~------------------------------------- 241 (347)
T 4fmz_A 208 VNQITD---------ITPVANMTRLNSLKIGNNKITDLSPLAN------------------------------------- 241 (347)
T ss_dssp SSCCCC---------CGGGGGCTTCCEEECCSSCCCCCGGGTT-------------------------------------
T ss_pred cCCCCC---------CchhhcCCcCCEEEccCCccCCCcchhc-------------------------------------
Confidence 986642 2337788999999999887765443111
Q ss_pred hhhHHHHHhcccceeeccccccccccccccchhhcccccEEEeecCCCeEEEEeCCCccccccccceeeccccccccccc
Q 003193 439 GYGMKMLLKRTEDLHLDELAGFKNVVHELDDEEGFARLRHLHVHNGPEILHILNSDGRVGTFPLLESLFLHNLINLEKVC 518 (840)
Q Consensus 439 ~~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~ 518 (840)
+++|+.|++++|... .+ ..+ ..+++|++|++++|. +..+ .....+++|+.|+++++. +....
T Consensus 242 -------l~~L~~L~l~~n~l~-~~-~~~---~~l~~L~~L~l~~n~-l~~~----~~~~~l~~L~~L~L~~n~-l~~~~ 303 (347)
T 4fmz_A 242 -------LSQLTWLEIGTNQIS-DI-NAV---KDLTKLKMLNVGSNQ-ISDI----SVLNNLSQLNSLFLNNNQ-LGNED 303 (347)
T ss_dssp -------CTTCCEEECCSSCCC-CC-GGG---TTCTTCCEEECCSSC-CCCC----GGGGGCTTCSEEECCSSC-CCGGG
T ss_pred -------CCCCCEEECCCCccC-CC-hhH---hcCCCcCEEEccCCc-cCCC----hhhcCCCCCCEEECcCCc-CCCcC
Confidence 345666666665432 22 223 667888888888875 2222 234677888888888863 33332
Q ss_pred ccccccCCCCcccCCccEEEEecCCCcccccchhHHhhcccccEEEEeccc
Q 003193 519 DGKVRLNEDDKSFSNLRIIKVEGCHRVKHLFPFSLVKNLLQLQKVKVTDCT 569 (840)
Q Consensus 519 ~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~i~~c~ 569 (840)
... ...+++|+.|++++|+ ++.+++ +..+++|++|++++|+
T Consensus 304 ~~~------l~~l~~L~~L~L~~n~-l~~~~~---~~~l~~L~~L~l~~N~ 344 (347)
T 4fmz_A 304 MEV------IGGLTNLTTLFLSQNH-ITDIRP---LASLSKMDSADFANQV 344 (347)
T ss_dssp HHH------HHTCTTCSEEECCSSS-CCCCGG---GGGCTTCSEESSSCC-
T ss_pred hhH------hhccccCCEEEccCCc-cccccC---hhhhhccceeehhhhc
Confidence 211 3468999999999986 677655 5788999999998875
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.91 E-value=6.9e-23 Score=230.05 Aligned_cols=289 Identities=19% Similarity=0.187 Sum_probs=126.3
Q ss_pred cceeEeeccCccccCCCchhhcCCCCCcEEEcCCCCCCCC-ChhhcCCCCCCEEEccCCccCC-c-ccccCCCCCCEEee
Q 003193 233 KLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSL-PSSLGCLINLRTLSLENCLVVD-V-AIIGDLKKLEILSL 309 (840)
Q Consensus 233 ~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~l-p~~l~~l~~L~~L~L~~~~~~~-~-~~i~~L~~L~~L~l 309 (840)
+++.|++++|.+... +...|.++++|++|++++|.++.+ |..|+++++|++|+|++|.+.. + ..++++++|++|++
T Consensus 33 ~l~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 111 (477)
T 2id5_A 33 ETRLLDLGKNRIKTL-NQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDI 111 (477)
T ss_dssp TCSEEECCSSCCCEE-CTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEEC
T ss_pred CCcEEECCCCccceE-CHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEEC
Confidence 444444444444322 222234444444444444444433 3444444444444444444444 2 23444444444444
Q ss_pred cCCCCccc-ChhhcCCCCCCEEEccCCCCCCccCcccccCCCCCcEEEccCCcccceecCCCCCCcccccCCCCCCeEEE
Q 003193 310 KHSSIEQL-PREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGNSFTQWKVEGQSNASLGELKQLSRLTTLEV 388 (840)
Q Consensus 310 ~~~~l~~l-p~~i~~L~~L~~L~L~~~~~l~~~p~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~l~~L~~L~l 388 (840)
++|.++.+ |..+.++++|++|++++ +.+..+++..++.+++|++|++++|.+... ....+.++++|+.|++
T Consensus 112 s~n~i~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-------~~~~l~~l~~L~~L~l 183 (477)
T 2id5_A 112 SENKIVILLDYMFQDLYNLKSLEVGD-NDLVYISHRAFSGLNSLEQLTLEKCNLTSI-------PTEALSHLHGLIVLRL 183 (477)
T ss_dssp TTSCCCEECTTTTTTCTTCCEEEECC-TTCCEECTTSSTTCTTCCEEEEESCCCSSC-------CHHHHTTCTTCCEEEE
T ss_pred CCCccccCChhHccccccCCEEECCC-CccceeChhhccCCCCCCEEECCCCcCccc-------ChhHhcccCCCcEEeC
Confidence 44444433 23344444444444444 333333333344444444444444433211 1122344444444444
Q ss_pred ecCCCCCCCCcc--cccCcceEEEEEcCcc----CCCCCccccceEEEeeCCCccchhhHHHHHhcccceeecccccccc
Q 003193 389 HIPDAQVMPQDL--VFVELERFRICIGDVW----SWSDGYETSKTLKLQLNNSTYLGYGMKMLLKRTEDLHLDELAGFKN 462 (840)
Q Consensus 389 ~~~~~~~~~~~~--~~~~L~~L~l~~~~~~----~~~~~~~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~ 462 (840)
+.|.+..++... .+++|+.|++..+... .......+|+.|+++++....+|....
T Consensus 184 ~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~------------------- 244 (477)
T 2id5_A 184 RHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAV------------------- 244 (477)
T ss_dssp ESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHH-------------------
T ss_pred CCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHh-------------------
Confidence 444443332211 2333333333322111 011111133333443333333332222
Q ss_pred ccccccchhhcccccEEEeecCCCeEEEEeCCCccccccccceeecccccccccccccccccCCCCcccCCccEEEEecC
Q 003193 463 VVHELDDEEGFARLRHLHVHNGPEILHILNSDGRVGTFPLLESLFLHNLINLEKVCDGKVRLNEDDKSFSNLRIIKVEGC 542 (840)
Q Consensus 463 ~~~~l~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~~~~~L~~L~l~~c 542 (840)
..+++|++|++++|. +..+. ......+++|+.|++.++ .+..+.... ...+++|+.|+++++
T Consensus 245 --------~~l~~L~~L~Ls~n~-l~~~~--~~~~~~l~~L~~L~L~~n-~l~~~~~~~------~~~l~~L~~L~L~~N 306 (477)
T 2id5_A 245 --------RHLVYLRFLNLSYNP-ISTIE--GSMLHELLRLQEIQLVGG-QLAVVEPYA------FRGLNYLRVLNVSGN 306 (477)
T ss_dssp --------TTCTTCCEEECCSSC-CCEEC--TTSCTTCTTCCEEECCSS-CCSEECTTT------BTTCTTCCEEECCSS
T ss_pred --------cCccccCeeECCCCc-CCccC--hhhccccccCCEEECCCC-ccceECHHH------hcCcccCCEEECCCC
Confidence 345555555555554 22221 112345556666666553 333332111 345677777777775
Q ss_pred CCcccccchhHHhhcccccEEEEeccc
Q 003193 543 HRVKHLFPFSLVKNLLQLQKVKVTDCT 569 (840)
Q Consensus 543 ~~L~~l~~~~~~~~l~~L~~L~i~~c~ 569 (840)
.++.+++ ..+..+++|++|++.+++
T Consensus 307 -~l~~~~~-~~~~~l~~L~~L~l~~N~ 331 (477)
T 2id5_A 307 -QLTTLEE-SVFHSVGNLETLILDSNP 331 (477)
T ss_dssp -CCSCCCG-GGBSCGGGCCEEECCSSC
T ss_pred -cCceeCH-hHcCCCcccCEEEccCCC
Confidence 4565543 334567777777777665
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.91 E-value=3.8e-23 Score=238.16 Aligned_cols=305 Identities=14% Similarity=0.174 Sum_probs=205.1
Q ss_pred cCCCcceeEeeccCccccCCCchhhcCCCCCcEEEcCCCCCCCCC-hhhcCCCCCCEEEccCCccCC--cccccCCCCCC
Q 003193 229 LGFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLP-SSLGCLINLRTLSLENCLVVD--VAIIGDLKKLE 305 (840)
Q Consensus 229 ~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp-~~l~~l~~L~~L~L~~~~~~~--~~~i~~L~~L~ 305 (840)
+.+.+++.+.+.++.+. .+|..+|.++++|++|++++|.++.+| ..|+.+++|++|+|++|.+.. +..++++++|+
T Consensus 48 l~l~~l~~l~l~~~~l~-~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 126 (597)
T 3oja_B 48 ITLNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLT 126 (597)
T ss_dssp GGGCCCSEEEESSCEES-EECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred ccCCCceEEEeeCCCCC-CcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCC
Confidence 35667777777766654 566666777777888888877777654 467777788888888777777 34567778888
Q ss_pred EEeecCCCCcccChhh-cCCCCCCEEEccCCCCCCccCcccccCCCCCcEEEccCCcccceecCCCCCCcccccCCCCCC
Q 003193 306 ILSLKHSSIEQLPREI-GQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGNSFTQWKVEGQSNASLGELKQLSRLT 384 (840)
Q Consensus 306 ~L~l~~~~l~~lp~~i-~~L~~L~~L~L~~~~~l~~~p~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~l~~L~ 384 (840)
+|++++|.++.+|..+ +++++|++|++++ +.+..+++..++++++|++|++++|.+.. ..+..+++|+
T Consensus 127 ~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~-N~l~~~~~~~~~~l~~L~~L~L~~N~l~~----------~~~~~l~~L~ 195 (597)
T 3oja_B 127 VLVLERNDLSSLPRGIFHNTPKLTTLSMSN-NNLERIEDDTFQATTSLQNLQLSSNRLTH----------VDLSLIPSLF 195 (597)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCCEEECCS-SCCCBCCTTTTTTCTTCCEEECTTSCCSB----------CCGGGCTTCS
T ss_pred EEEeeCCCCCCCCHHHhccCCCCCEEEeeC-CcCCCCChhhhhcCCcCcEEECcCCCCCC----------cChhhhhhhh
Confidence 8888887777777664 7777888888877 45666666557777788888877776542 1244566777
Q ss_pred eEEEecCCCCCCCCcccccCcceEEEEEcCccCCCCCccccceEEEeeCCCccchhhHHHHHhcccceeecccccccccc
Q 003193 385 TLEVHIPDAQVMPQDLVFVELERFRICIGDVWSWSDGYETSKTLKLQLNNSTYLGYGMKMLLKRTEDLHLDELAGFKNVV 464 (840)
Q Consensus 385 ~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~ 464 (840)
.|++++|.+..++ ....++.|+++++....++..+ .++|+.|++++|.... +
T Consensus 196 ~L~l~~n~l~~l~-----------------------~~~~L~~L~ls~n~l~~~~~~~---~~~L~~L~L~~n~l~~--~ 247 (597)
T 3oja_B 196 HANVSYNLLSTLA-----------------------IPIAVEELDASHNSINVVRGPV---NVELTILKLQHNNLTD--T 247 (597)
T ss_dssp EEECCSSCCSEEE-----------------------CCTTCSEEECCSSCCCEEECSC---CSCCCEEECCSSCCCC--C
T ss_pred hhhcccCcccccc-----------------------CCchhheeeccCCccccccccc---CCCCCEEECCCCCCCC--C
Confidence 7777766544322 1123444444444443333222 2578888888776443 2
Q ss_pred ccccchhhcccccEEEeecCCCeEEEEeCCCccccccccceeecccccccccccccccccCCCCcccCCccEEEEecCCC
Q 003193 465 HELDDEEGFARLRHLHVHNGPEILHILNSDGRVGTFPLLESLFLHNLINLEKVCDGKVRLNEDDKSFSNLRIIKVEGCHR 544 (840)
Q Consensus 465 ~~l~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~ 544 (840)
..+ ..+++|+.|++++|.-. .+. ......+++|+.|+++++ .+..++.. ...+|+|+.|++++| .
T Consensus 248 ~~l---~~l~~L~~L~Ls~N~l~-~~~--~~~~~~l~~L~~L~Ls~N-~l~~l~~~-------~~~l~~L~~L~Ls~N-~ 312 (597)
T 3oja_B 248 AWL---LNYPGLVEVDLSYNELE-KIM--YHPFVKMQRLERLYISNN-RLVALNLY-------GQPIPTLKVLDLSHN-H 312 (597)
T ss_dssp GGG---GGCTTCSEEECCSSCCC-EEE--SGGGTTCSSCCEEECTTS-CCCEEECS-------SSCCTTCCEEECCSS-C
T ss_pred hhh---ccCCCCCEEECCCCccC-CCC--HHHhcCccCCCEEECCCC-CCCCCCcc-------cccCCCCcEEECCCC-C
Confidence 334 67888999999888633 222 234567888999999884 55554321 346899999999987 4
Q ss_pred cccccchhHHhhcccccEEEEecccccceeeccccccccccCCccccccccccceeecccCc
Q 003193 545 VKHLFPFSLVKNLLQLQKVKVTDCTNLKLIVGKESENSAHKNGSISGVYFRKLHFLKLQHLP 606 (840)
Q Consensus 545 L~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~c~ 606 (840)
++.+|+. +..+++|+.|++++|.- ..+ .+..+++|+.|++.+++
T Consensus 313 l~~i~~~--~~~l~~L~~L~L~~N~l-~~~---------------~~~~~~~L~~L~l~~N~ 356 (597)
T 3oja_B 313 LLHVERN--QPQFDRLENLYLDHNSI-VTL---------------KLSTHHTLKNLTLSHND 356 (597)
T ss_dssp CCCCGGG--HHHHTTCSEEECCSSCC-CCC---------------CCCTTCCCSEEECCSSC
T ss_pred CCccCcc--cccCCCCCEEECCCCCC-CCc---------------ChhhcCCCCEEEeeCCC
Confidence 6677532 57889999999999763 322 23478999999998876
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.91 E-value=1.2e-22 Score=228.00 Aligned_cols=314 Identities=19% Similarity=0.216 Sum_probs=193.8
Q ss_pred eeEeeccCccccCCCchhhcCCCCCcEEEcCCCCCCCC-ChhhcCCCCCCEEEccCCccCC--cccccCCCCCCEEeecC
Q 003193 235 KLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSL-PSSLGCLINLRTLSLENCLVVD--VAIIGDLKKLEILSLKH 311 (840)
Q Consensus 235 ~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~l-p~~l~~l~~L~~L~L~~~~~~~--~~~i~~L~~L~~L~l~~ 311 (840)
+.++..++.+. .+|..+ .+++++|++++|.++.+ |..|.++++|++|+|++|.+.. |..++++++|++|++++
T Consensus 14 ~~v~c~~~~l~-~ip~~~---~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~ 89 (477)
T 2id5_A 14 RAVLCHRKRFV-AVPEGI---PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRS 89 (477)
T ss_dssp TEEECCSCCCS-SCCSCC---CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEEEeCCCCcC-cCCCCC---CCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCC
Confidence 34555555543 566544 35788888888888866 5678888888888888888777 67788888888888888
Q ss_pred CCCcccChh-hcCCCCCCEEEccCCCCCCccCcccccCCCCCcEEEccCCcccceecCCCCCCcccccCCCCCCeEEEec
Q 003193 312 SSIEQLPRE-IGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGNSFTQWKVEGQSNASLGELKQLSRLTTLEVHI 390 (840)
Q Consensus 312 ~~l~~lp~~-i~~L~~L~~L~L~~~~~l~~~p~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~l~~L~~L~l~~ 390 (840)
|.++.+|.. +.++++|++|++++ +.+..+++..+.++++|++|++++|.+....+ ..+.++++|+.|++++
T Consensus 90 n~l~~~~~~~~~~l~~L~~L~Ls~-n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-------~~~~~l~~L~~L~l~~ 161 (477)
T 2id5_A 90 NRLKLIPLGVFTGLSNLTKLDISE-NKIVILLDYMFQDLYNLKSLEVGDNDLVYISH-------RAFSGLNSLEQLTLEK 161 (477)
T ss_dssp SCCCSCCTTSSTTCTTCCEEECTT-SCCCEECTTTTTTCTTCCEEEECCTTCCEECT-------TSSTTCTTCCEEEEES
T ss_pred CcCCccCcccccCCCCCCEEECCC-CccccCChhHccccccCCEEECCCCccceeCh-------hhccCCCCCCEEECCC
Confidence 888888764 57888888888888 56666655557888888888888776543222 3455667777777776
Q ss_pred CCCCCCCCcccccCcceEEEEEcCccCCCCCccccceEEEeeCCCccchhhHHHHHhcccceeeccccccccccccccch
Q 003193 391 PDAQVMPQDLVFVELERFRICIGDVWSWSDGYETSKTLKLQLNNSTYLGYGMKMLLKRTEDLHLDELAGFKNVVHELDDE 470 (840)
Q Consensus 391 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~~ 470 (840)
|.+..++.. ....+++|+.|+++++......+..+
T Consensus 162 n~l~~~~~~------------------------------------------~l~~l~~L~~L~l~~n~i~~~~~~~~--- 196 (477)
T 2id5_A 162 CNLTSIPTE------------------------------------------ALSHLHGLIVLRLRHLNINAIRDYSF--- 196 (477)
T ss_dssp CCCSSCCHH------------------------------------------HHTTCTTCCEEEEESCCCCEECTTCS---
T ss_pred CcCcccChh------------------------------------------HhcccCCCcEEeCCCCcCcEeChhhc---
Confidence 654433211 11112344444444443222222222
Q ss_pred hhcccccEEEeecCCCeEEEEeCCCccccccccceeecccccccccccccccccCCCCcccCCccEEEEecCCCcccccc
Q 003193 471 EGFARLRHLHVHNGPEILHILNSDGRVGTFPLLESLFLHNLINLEKVCDGKVRLNEDDKSFSNLRIIKVEGCHRVKHLFP 550 (840)
Q Consensus 471 ~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~ 550 (840)
..+++|++|++++|. .+..++.. .....+|+.|++++| +++.+++
T Consensus 197 ~~l~~L~~L~l~~~~---------------------------~~~~~~~~-------~~~~~~L~~L~l~~n-~l~~~~~ 241 (477)
T 2id5_A 197 KRLYRLKVLEISHWP---------------------------YLDTMTPN-------CLYGLNLTSLSITHC-NLTAVPY 241 (477)
T ss_dssp CSCTTCCEEEEECCT---------------------------TCCEECTT-------TTTTCCCSEEEEESS-CCCSCCH
T ss_pred ccCcccceeeCCCCc---------------------------cccccCcc-------cccCccccEEECcCC-cccccCH
Confidence 334445555554443 33333221 112347888888776 4666642
Q ss_pred hhHHhhcccccEEEEecccccceeeccccccccccCCccccccccccceeecccCcccccccCCCCCCCccCCCCCcccc
Q 003193 551 FSLVKNLLQLQKVKVTDCTNLKLIVGKESENSAHKNGSISGVYFRKLHFLKLQHLPQLTSSGFDLETPTNTQGSNPGIIA 630 (840)
Q Consensus 551 ~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~c~~L~~~~~~~~~~~~~~~~~l~~l~ 630 (840)
..+..+++|++|+++++. +..++.. .+..+++|++|++.++. +..+..
T Consensus 242 -~~~~~l~~L~~L~Ls~n~-l~~~~~~------------~~~~l~~L~~L~L~~n~-l~~~~~----------------- 289 (477)
T 2id5_A 242 -LAVRHLVYLRFLNLSYNP-ISTIEGS------------MLHELLRLQEIQLVGGQ-LAVVEP----------------- 289 (477)
T ss_dssp -HHHTTCTTCCEEECCSSC-CCEECTT------------SCTTCTTCCEEECCSSC-CSEECT-----------------
T ss_pred -HHhcCccccCeeECCCCc-CCccChh------------hccccccCCEEECCCCc-cceECH-----------------
Confidence 345677888888888765 3333321 33467777777777653 222211
Q ss_pred cCCCCCcccccccccccCCcceEecccccchhhcccCCccccccCCCceEEEecccC
Q 003193 631 EGDPKDFTSLFNERVVFPSLKKLKLSSINVEKIWLNSFSAIESWGKNLTKLTVEKCG 687 (840)
Q Consensus 631 ~~~~~~~~~~~~~~~~l~~L~~L~l~~c~l~~~~~~~~~~~~~~l~~L~~L~i~~C~ 687 (840)
..+..+++|+.|+|++|.++.++...+ ..+++|+.|++++++
T Consensus 290 -----------~~~~~l~~L~~L~L~~N~l~~~~~~~~----~~l~~L~~L~l~~N~ 331 (477)
T 2id5_A 290 -----------YAFRGLNYLRVLNVSGNQLTTLEESVF----HSVGNLETLILDSNP 331 (477)
T ss_dssp -----------TTBTTCTTCCEEECCSSCCSCCCGGGB----SCGGGCCEEECCSSC
T ss_pred -----------HHhcCcccCCEEECCCCcCceeCHhHc----CCCcccCEEEccCCC
Confidence 112356788888888887777665444 355778888886654
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.91 E-value=2.5e-23 Score=227.01 Aligned_cols=302 Identities=18% Similarity=0.167 Sum_probs=236.9
Q ss_pred ccCCCcEEEeccCCcccCCccc--CCCcceeEeeccCccccCCCchhhcCCCCCcEEEcCCCCCCCCC-hhhcCCCCCCE
Q 003193 208 IDEAPTAISIPFRGIYELPERL--GFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLP-SSLGCLINLRT 284 (840)
Q Consensus 208 ~~~~l~~L~l~~~~~~~l~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp-~~l~~l~~L~~ 284 (840)
...+++.+++.++.+..+|... .+++|++|++++|.+.. ++...|..+++|++|++++|.++.+| ..++++++|++
T Consensus 43 ~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 121 (390)
T 3o6n_A 43 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEE-IDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTV 121 (390)
T ss_dssp GGCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCE-ECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred ccCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccc-cChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCE
Confidence 4688999999999999998864 79999999999998764 45555699999999999999999874 56899999999
Q ss_pred EEccCCccCC-ccc-ccCCCCCCEEeecCCCCcccCh-hhcCCCCCCEEEccCCCCCCccCcccccCCCCCcEEEccCCc
Q 003193 285 LSLENCLVVD-VAI-IGDLKKLEILSLKHSSIEQLPR-EIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGNSF 361 (840)
Q Consensus 285 L~L~~~~~~~-~~~-i~~L~~L~~L~l~~~~l~~lp~-~i~~L~~L~~L~L~~~~~l~~~p~~~l~~L~~L~~L~l~~~~ 361 (840)
|++++|.+.. |.. ++++++|++|++++|.++.++. .++++++|++|++++ +.+..++ ++.+++|++|++++|.
T Consensus 122 L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~-n~l~~~~---~~~l~~L~~L~l~~n~ 197 (390)
T 3o6n_A 122 LVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSS-NRLTHVD---LSLIPSLFHANVSYNL 197 (390)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCS-SCCSBCC---GGGCTTCSEEECCSSC
T ss_pred EECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCC-CcCCccc---cccccccceeeccccc
Confidence 9999999998 544 6899999999999999998854 589999999999999 5777775 5778999999999886
Q ss_pred ccceecCCCCCCcccccCCCCCCeEEEecCCCCCCCCcccccCcceEEEEEcCccCCCCCccccceEEEeeCCCccchhh
Q 003193 362 TQWKVEGQSNASLGELKQLSRLTTLEVHIPDAQVMPQDLVFVELERFRICIGDVWSWSDGYETSKTLKLQLNNSTYLGYG 441 (840)
Q Consensus 362 ~~~~~~~~~~~~l~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~ 441 (840)
+. .+....+|+.|++++|.+..++... .. +++.|+++++.....+ +
T Consensus 198 l~------------~~~~~~~L~~L~l~~n~l~~~~~~~-~~--------------------~L~~L~l~~n~l~~~~-~ 243 (390)
T 3o6n_A 198 LS------------TLAIPIAVEELDASHNSINVVRGPV-NV--------------------ELTILKLQHNNLTDTA-W 243 (390)
T ss_dssp CS------------EEECCSSCSEEECCSSCCCEEECCC-CS--------------------SCCEEECCSSCCCCCG-G
T ss_pred cc------------ccCCCCcceEEECCCCeeeeccccc-cc--------------------cccEEECCCCCCcccH-H
Confidence 53 3344568999999998877654432 23 4455555554444332 2
Q ss_pred HHHHHhcccceeeccccccccccccccchhhcccccEEEeecCCCeEEEEeCCCccccccccceeecccccccccccccc
Q 003193 442 MKMLLKRTEDLHLDELAGFKNVVHELDDEEGFARLRHLHVHNGPEILHILNSDGRVGTFPLLESLFLHNLINLEKVCDGK 521 (840)
Q Consensus 442 ~~~~l~~L~~L~L~~~~~~~~~~~~l~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~ 521 (840)
+. .+++|+.|++++|......+..+ ..+++|++|++++|. +..++. ....+|+|++|+++++ .+..++..
T Consensus 244 l~-~l~~L~~L~Ls~n~l~~~~~~~~---~~l~~L~~L~L~~n~-l~~~~~---~~~~l~~L~~L~L~~n-~l~~~~~~- 313 (390)
T 3o6n_A 244 LL-NYPGLVEVDLSYNELEKIMYHPF---VKMQRLERLYISNNR-LVALNL---YGQPIPTLKVLDLSHN-HLLHVERN- 313 (390)
T ss_dssp GG-GCTTCSEEECCSSCCCEEESGGG---TTCSSCCEEECCSSC-CCEEEC---SSSCCTTCCEEECCSS-CCCCCGGG-
T ss_pred Hc-CCCCccEEECCCCcCCCcChhHc---cccccCCEEECCCCc-CcccCc---ccCCCCCCCEEECCCC-cceecCcc-
Confidence 22 36889999999987665556666 779999999999986 444432 3367899999999996 55555422
Q ss_pred cccCCCCcccCCccEEEEecCCCcccccchhHHhhcccccEEEEeccc
Q 003193 522 VRLNEDDKSFSNLRIIKVEGCHRVKHLFPFSLVKNLLQLQKVKVTDCT 569 (840)
Q Consensus 522 ~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~i~~c~ 569 (840)
...+++|+.|++++++ ++.++ ...+++|++|++++++
T Consensus 314 ------~~~l~~L~~L~L~~N~-i~~~~----~~~~~~L~~L~l~~N~ 350 (390)
T 3o6n_A 314 ------QPQFDRLENLYLDHNS-IVTLK----LSTHHTLKNLTLSHND 350 (390)
T ss_dssp ------HHHHTTCSEEECCSSC-CCCCC----CCTTCCCSEEECCSSC
T ss_pred ------ccccCcCCEEECCCCc-cceeC----chhhccCCEEEcCCCC
Confidence 3568999999999975 66663 3678999999999875
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.88 E-value=4e-22 Score=229.59 Aligned_cols=303 Identities=18% Similarity=0.155 Sum_probs=237.0
Q ss_pred ccCCCcEEEeccCCcccCCccc--CCCcceeEeeccCccccCCCchhhcCCCCCcEEEcCCCCCCCCCh-hhcCCCCCCE
Q 003193 208 IDEAPTAISIPFRGIYELPERL--GFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPS-SLGCLINLRT 284 (840)
Q Consensus 208 ~~~~l~~L~l~~~~~~~l~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~-~l~~l~~L~~ 284 (840)
...+++.+++.++.+..+|... .+++|++|++++|.+.. ++...|..+++|++|++++|.++.+|+ .++++++|++
T Consensus 49 ~l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 127 (597)
T 3oja_B 49 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEE-IDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTV 127 (597)
T ss_dssp GGCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCE-ECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred cCCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCC-CChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCE
Confidence 4678999999999999998764 79999999999999875 444456899999999999999998754 5799999999
Q ss_pred EEccCCccCC-ccc-ccCCCCCCEEeecCCCCcccCh-hhcCCCCCCEEEccCCCCCCccCcccccCCCCCcEEEccCCc
Q 003193 285 LSLENCLVVD-VAI-IGDLKKLEILSLKHSSIEQLPR-EIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGNSF 361 (840)
Q Consensus 285 L~L~~~~~~~-~~~-i~~L~~L~~L~l~~~~l~~lp~-~i~~L~~L~~L~L~~~~~l~~~p~~~l~~L~~L~~L~l~~~~ 361 (840)
|++++|.+.. |.. ++++++|++|++++|.++.+|. .++++++|++|++++ +.+..++ ++.+++|++|++++|.
T Consensus 128 L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~-N~l~~~~---~~~l~~L~~L~l~~n~ 203 (597)
T 3oja_B 128 LVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSS-NRLTHVD---LSLIPSLFHANVSYNL 203 (597)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTT-SCCSBCC---GGGCTTCSEEECCSSC
T ss_pred EEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcC-CCCCCcC---hhhhhhhhhhhcccCc
Confidence 9999999998 544 6999999999999999998765 689999999999999 5777775 5678999999999886
Q ss_pred ccceecCCCCCCcccccCCCCCCeEEEecCCCCCCCCcccccCcceEEEEEcCccCCCCCccccceEEEeeCCCccchhh
Q 003193 362 TQWKVEGQSNASLGELKQLSRLTTLEVHIPDAQVMPQDLVFVELERFRICIGDVWSWSDGYETSKTLKLQLNNSTYLGYG 441 (840)
Q Consensus 362 ~~~~~~~~~~~~l~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~ 441 (840)
+. .+....+|+.|++++|.+..++... . .+++.|+++++..... .+
T Consensus 204 l~------------~l~~~~~L~~L~ls~n~l~~~~~~~-~--------------------~~L~~L~L~~n~l~~~-~~ 249 (597)
T 3oja_B 204 LS------------TLAIPIAVEELDASHNSINVVRGPV-N--------------------VELTILKLQHNNLTDT-AW 249 (597)
T ss_dssp CS------------EEECCTTCSEEECCSSCCCEEECSC-C--------------------SCCCEEECCSSCCCCC-GG
T ss_pred cc------------cccCCchhheeeccCCccccccccc-C--------------------CCCCEEECCCCCCCCC-hh
Confidence 53 3445568999999998876555432 1 2455555555544433 22
Q ss_pred HHHHHhcccceeeccccccccccccccchhhcccccEEEeecCCCeEEEEeCCCccccccccceeecccccccccccccc
Q 003193 442 MKMLLKRTEDLHLDELAGFKNVVHELDDEEGFARLRHLHVHNGPEILHILNSDGRVGTFPLLESLFLHNLINLEKVCDGK 521 (840)
Q Consensus 442 ~~~~l~~L~~L~L~~~~~~~~~~~~l~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~ 521 (840)
+. .+++|+.|++++|......+..+ ..+++|+.|++++|. +..++. ....+|+|+.|+++++ .+..++..
T Consensus 250 l~-~l~~L~~L~Ls~N~l~~~~~~~~---~~l~~L~~L~Ls~N~-l~~l~~---~~~~l~~L~~L~Ls~N-~l~~i~~~- 319 (597)
T 3oja_B 250 LL-NYPGLVEVDLSYNELEKIMYHPF---VKMQRLERLYISNNR-LVALNL---YGQPIPTLKVLDLSHN-HLLHVERN- 319 (597)
T ss_dssp GG-GCTTCSEEECCSSCCCEEESGGG---TTCSSCCEEECTTSC-CCEEEC---SSSCCTTCCEEECCSS-CCCCCGGG-
T ss_pred hc-cCCCCCEEECCCCccCCCCHHHh---cCccCCCEEECCCCC-CCCCCc---ccccCCCCcEEECCCC-CCCccCcc-
Confidence 22 36889999999987766666666 779999999999986 444432 3367899999999986 45554322
Q ss_pred cccCCCCcccCCccEEEEecCCCcccccchhHHhhcccccEEEEecccc
Q 003193 522 VRLNEDDKSFSNLRIIKVEGCHRVKHLFPFSLVKNLLQLQKVKVTDCTN 570 (840)
Q Consensus 522 ~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~i~~c~~ 570 (840)
...+++|+.|++++|+ ++.++ +..+++|+.|++++++-
T Consensus 320 ------~~~l~~L~~L~L~~N~-l~~~~----~~~~~~L~~L~l~~N~~ 357 (597)
T 3oja_B 320 ------QPQFDRLENLYLDHNS-IVTLK----LSTHHTLKNLTLSHNDW 357 (597)
T ss_dssp ------HHHHTTCSEEECCSSC-CCCCC----CCTTCCCSEEECCSSCE
T ss_pred ------cccCCCCCEEECCCCC-CCCcC----hhhcCCCCEEEeeCCCC
Confidence 4578999999999975 56653 35789999999998763
|
| >2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.88 E-value=8.4e-22 Score=209.69 Aligned_cols=237 Identities=19% Similarity=0.281 Sum_probs=147.9
Q ss_pred cceeEeeccCccccCCCchhhcCCCCCcEEEcCCCCCCCC-ChhhcCCCCCCEEEccCCccCC--cccccCCCCCCEEee
Q 003193 233 KLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSL-PSSLGCLINLRTLSLENCLVVD--VAIIGDLKKLEILSL 309 (840)
Q Consensus 233 ~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~l-p~~l~~l~~L~~L~L~~~~~~~--~~~i~~L~~L~~L~l 309 (840)
+++.++++++.+. .+|..+ .++|++|++++|.++.+ |..+.++++|++|++++|.++. +..++++++|++|++
T Consensus 34 ~l~~l~~~~~~l~-~ip~~~---~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 109 (332)
T 2ft3_A 34 HLRVVQCSDLGLK-AVPKEI---SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYI 109 (332)
T ss_dssp ETTEEECCSSCCS-SCCSCC---CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEEC
T ss_pred cCCEEECCCCCcc-ccCCCC---CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEEC
Confidence 5777777777654 566654 35788888888888866 4578888888888888888777 567888888888888
Q ss_pred cCCCCcccChhhcCCCCCCEEEccCCCCCCccCcccccCCCCCcEEEccCCcccceecCCCCCCcccccCCCCCCeEEEe
Q 003193 310 KHSSIEQLPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGNSFTQWKVEGQSNASLGELKQLSRLTTLEVH 389 (840)
Q Consensus 310 ~~~~l~~lp~~i~~L~~L~~L~L~~~~~l~~~p~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~l~~L~~L~l~ 389 (840)
++|.++.+|..+. ++|++|++++ +.+..+|...++++++|++|++++|.+... +.....+..+ +|+.|+++
T Consensus 110 ~~n~l~~l~~~~~--~~L~~L~l~~-n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~-----~~~~~~~~~l-~L~~L~l~ 180 (332)
T 2ft3_A 110 SKNHLVEIPPNLP--SSLVELRIHD-NRIRKVPKGVFSGLRNMNCIEMGGNPLENS-----GFEPGAFDGL-KLNYLRIS 180 (332)
T ss_dssp CSSCCCSCCSSCC--TTCCEEECCS-SCCCCCCSGGGSSCSSCCEEECCSCCCBGG-----GSCTTSSCSC-CCSCCBCC
T ss_pred CCCcCCccCcccc--ccCCEEECCC-CccCccCHhHhCCCccCCEEECCCCccccC-----CCCcccccCC-ccCEEECc
Confidence 8888888887665 7888888888 567778777678888888888888765321 1122344555 78888888
Q ss_pred cCCCCCCCCcccccCcceEEEEEcCccCCCCCccccceEEEeeCCCccchhhHHHHHhcccceeeccccccccccccccc
Q 003193 390 IPDAQVMPQDLVFVELERFRICIGDVWSWSDGYETSKTLKLQLNNSTYLGYGMKMLLKRTEDLHLDELAGFKNVVHELDD 469 (840)
Q Consensus 390 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~ 469 (840)
+|.+..+|..+. ++|+.| +++++.....+......+++|+.|++++|......+..+
T Consensus 181 ~n~l~~l~~~~~-~~L~~L--------------------~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~-- 237 (332)
T 2ft3_A 181 EAKLTGIPKDLP-ETLNEL--------------------HLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSL-- 237 (332)
T ss_dssp SSBCSSCCSSSC-SSCSCC--------------------BCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGG--
T ss_pred CCCCCccCcccc-CCCCEE--------------------ECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHh--
Confidence 877766654321 233333 333222222221111123455666666554333222233
Q ss_pred hhhcccccEEEeecCCCeEEEEeCCCccccccccceeeccc
Q 003193 470 EEGFARLRHLHVHNGPEILHILNSDGRVGTFPLLESLFLHN 510 (840)
Q Consensus 470 ~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~ 510 (840)
..+++|++|++++|. +..+ +.....+++|+.|++++
T Consensus 238 -~~l~~L~~L~L~~N~-l~~l---p~~l~~l~~L~~L~l~~ 273 (332)
T 2ft3_A 238 -SFLPTLRELHLDNNK-LSRV---PAGLPDLKLLQVVYLHT 273 (332)
T ss_dssp -GGCTTCCEEECCSSC-CCBC---CTTGGGCTTCCEEECCS
T ss_pred -hCCCCCCEEECCCCc-Ceec---ChhhhcCccCCEEECCC
Confidence 455666666666654 2221 12234455555555555
|
| >1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=4.3e-21 Score=204.06 Aligned_cols=154 Identities=20% Similarity=0.345 Sum_probs=96.8
Q ss_pred cceeEeeccCccccCCCchhhcCCCCCcEEEcCCCCCCCCCh-hhcCCCCCCEEEccCCccCC--cccccCCCCCCEEee
Q 003193 233 KLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPS-SLGCLINLRTLSLENCLVVD--VAIIGDLKKLEILSL 309 (840)
Q Consensus 233 ~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~-~l~~l~~L~~L~L~~~~~~~--~~~i~~L~~L~~L~l 309 (840)
+++.++++++.+. .+|..+ .+.|++|++++|.++.+|. .++++++|++|++++|.+.. |..++++++|++|++
T Consensus 32 ~l~~l~~~~~~l~-~lp~~~---~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 107 (330)
T 1xku_A 32 HLRVVQCSDLGLE-KVPKDL---PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYL 107 (330)
T ss_dssp ETTEEECTTSCCC-SCCCSC---CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEEC
T ss_pred CCeEEEecCCCcc-ccCccC---CCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEEC
Confidence 4555555555443 344433 2466777777777766644 56777777777777777666 556777777777777
Q ss_pred cCCCCcccChhhcCCCCCCEEEccCCCCCCccCcccccCCCCCcEEEccCCcccceecCCCCCCcccccCCCCCCeEEEe
Q 003193 310 KHSSIEQLPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGNSFTQWKVEGQSNASLGELKQLSRLTTLEVH 389 (840)
Q Consensus 310 ~~~~l~~lp~~i~~L~~L~~L~L~~~~~l~~~p~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~l~~L~~L~l~ 389 (840)
++|.++.+|..+. ++|++|++++ +.+..++...++++++|++|++++|.+... +.....+.++++|+.|+++
T Consensus 108 s~n~l~~l~~~~~--~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-----~~~~~~~~~l~~L~~L~l~ 179 (330)
T 1xku_A 108 SKNQLKELPEKMP--KTLQELRVHE-NEITKVRKSVFNGLNQMIVVELGTNPLKSS-----GIENGAFQGMKKLSYIRIA 179 (330)
T ss_dssp CSSCCSBCCSSCC--TTCCEEECCS-SCCCBBCHHHHTTCTTCCEEECCSSCCCGG-----GBCTTGGGGCTTCCEEECC
T ss_pred CCCcCCccChhhc--ccccEEECCC-CcccccCHhHhcCCccccEEECCCCcCCcc-----CcChhhccCCCCcCEEECC
Confidence 7777777766554 6777777776 456666666567777777777777654310 1122445666777777777
Q ss_pred cCCCCCCCC
Q 003193 390 IPDAQVMPQ 398 (840)
Q Consensus 390 ~~~~~~~~~ 398 (840)
+|.+..++.
T Consensus 180 ~n~l~~l~~ 188 (330)
T 1xku_A 180 DTNITTIPQ 188 (330)
T ss_dssp SSCCCSCCS
T ss_pred CCccccCCc
Confidence 766655543
|
| >3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* | Back alignment and structure |
|---|
Probab=99.86 E-value=2.9e-23 Score=240.29 Aligned_cols=152 Identities=18% Similarity=0.247 Sum_probs=99.0
Q ss_pred CCCcceeEeeccCccc---cCCCc-----------hhhcCCCCCcEEEcCCCCCCC-CChhhcCC--CCCCEEEccCCc-
Q 003193 230 GFLKLKLFLFFTENLS---LQIPD-----------PFFEGMTELRVLDLTGFRFHS-LPSSLGCL--INLRTLSLENCL- 291 (840)
Q Consensus 230 ~~~~L~~L~l~~~~~~---~~~~~-----------~~~~~l~~Lr~L~l~~~~~~~-lp~~l~~l--~~L~~L~L~~~~- 291 (840)
.+++|+.|.+.++... +.+|. .++..+++|++|++++|.++. .+..+... .+|++|++++|.
T Consensus 71 ~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~ 150 (592)
T 3ogk_B 71 RFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSG 150 (592)
T ss_dssp HCTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEE
T ss_pred hCCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCC
Confidence 5788999999765421 12221 222367889999999887663 34445553 349999998886
Q ss_pred cCC---cccccCCCCCCEEeecCCCCcc-----cChhhcCCCCCCEEEccCCCCCCccCc----ccccCCCCCcEEEccC
Q 003193 292 VVD---VAIIGDLKKLEILSLKHSSIEQ-----LPREIGQLTCLKLLDLSNCSKLKEIRP----NVISNLTRLEELYMGN 359 (840)
Q Consensus 292 ~~~---~~~i~~L~~L~~L~l~~~~l~~-----lp~~i~~L~~L~~L~L~~~~~l~~~p~----~~l~~L~~L~~L~l~~ 359 (840)
+.. +..+.++++|++|++++|.++. ++.....+++|++|+++++ .+..+.. ..+.++++|++|++++
T Consensus 151 ~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n-~~~~~~~~~l~~~~~~~~~L~~L~L~~ 229 (592)
T 3ogk_B 151 FTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMT-EFAKISPKDLETIARNCRSLVSVKVGD 229 (592)
T ss_dssp EEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTC-CCSSCCHHHHHHHHHHCTTCCEEECSS
T ss_pred cCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeecc-CCCccCHHHHHHHHhhCCCCcEEeccC
Confidence 222 2334478889999998887653 3444567888999998874 4442221 2246788899998888
Q ss_pred CcccceecCCCCCCcccccCCCCCCeEEEec
Q 003193 360 SFTQWKVEGQSNASLGELKQLSRLTTLEVHI 390 (840)
Q Consensus 360 ~~~~~~~~~~~~~~l~~l~~l~~L~~L~l~~ 390 (840)
|.+.. ....+..+++|+.|+++.
T Consensus 230 ~~~~~--------l~~~~~~~~~L~~L~l~~ 252 (592)
T 3ogk_B 230 FEILE--------LVGFFKAAANLEEFCGGS 252 (592)
T ss_dssp CBGGG--------GHHHHHHCTTCCEEEECB
T ss_pred ccHHH--------HHHHHhhhhHHHhhcccc
Confidence 75432 224566778888888874
|
| >1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 | Back alignment and structure |
|---|
Probab=99.86 E-value=2.2e-21 Score=204.09 Aligned_cols=245 Identities=17% Similarity=0.173 Sum_probs=175.8
Q ss_pred CCCcEEEeccCCcc---cCCccc-CCCcceeEeecc-CccccCCCchhhcCCCCCcEEEcCCCCCC-CCChhhcCCCCCC
Q 003193 210 EAPTAISIPFRGIY---ELPERL-GFLKLKLFLFFT-ENLSLQIPDPFFEGMTELRVLDLTGFRFH-SLPSSLGCLINLR 283 (840)
Q Consensus 210 ~~l~~L~l~~~~~~---~l~~~~-~~~~L~~L~l~~-~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~-~lp~~l~~l~~L~ 283 (840)
.++++|+++++.+. .+|..+ .+++|++|++++ |.+.+.+|..+ .++++|++|++++|.++ .+|..++++++|+
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l-~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~ 128 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAI-AKLTQLHYLYITHTNVSGAIPDFLSQIKTLV 128 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGG-GGCTTCSEEEEEEECCEEECCGGGGGCTTCC
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhH-hcCCCCCEEECcCCeeCCcCCHHHhCCCCCC
Confidence 56788888888885 466655 688888888884 77776777665 77888888888888887 6788888888888
Q ss_pred EEEccCCccCC--cccccCCCCCCEEeecCCCCc-ccChhhcCCC-CCCEEEccCCCCCC-ccCcccccCCCCCcEEEcc
Q 003193 284 TLSLENCLVVD--VAIIGDLKKLEILSLKHSSIE-QLPREIGQLT-CLKLLDLSNCSKLK-EIRPNVISNLTRLEELYMG 358 (840)
Q Consensus 284 ~L~L~~~~~~~--~~~i~~L~~L~~L~l~~~~l~-~lp~~i~~L~-~L~~L~L~~~~~l~-~~p~~~l~~L~~L~~L~l~ 358 (840)
+|++++|.+.. |..++++++|++|++++|.++ .+|..+++++ +|++|++++| .+. .+|.. ++.++ |++|+++
T Consensus 129 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N-~l~~~~~~~-~~~l~-L~~L~Ls 205 (313)
T 1ogq_A 129 TLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRN-RLTGKIPPT-FANLN-LAFVDLS 205 (313)
T ss_dssp EEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSS-EEEEECCGG-GGGCC-CSEEECC
T ss_pred EEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCC-eeeccCChH-HhCCc-ccEEECc
Confidence 88888888774 677888888888888888887 7788888887 8888888884 444 45544 67776 8888888
Q ss_pred CCcccceecCCCCCCcccccCCCCCCeEEEecCCCCCCCCcccccCcceEEEEEcCccCCCCCccccceEEEeeCCCccc
Q 003193 359 NSFTQWKVEGQSNASLGELKQLSRLTTLEVHIPDAQVMPQDLVFVELERFRICIGDVWSWSDGYETSKTLKLQLNNSTYL 438 (840)
Q Consensus 359 ~~~~~~~~~~~~~~~l~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~l~~~~~~~~ 438 (840)
+|.+.... ...+..+++|+.|++++|.+...+..+
T Consensus 206 ~N~l~~~~-------~~~~~~l~~L~~L~L~~N~l~~~~~~~-------------------------------------- 240 (313)
T 1ogq_A 206 RNMLEGDA-------SVLFGSDKNTQKIHLAKNSLAFDLGKV-------------------------------------- 240 (313)
T ss_dssp SSEEEECC-------GGGCCTTSCCSEEECCSSEECCBGGGC--------------------------------------
T ss_pred CCcccCcC-------CHHHhcCCCCCEEECCCCceeeecCcc--------------------------------------
Confidence 87654322 255667777888888776543221110
Q ss_pred hhhHHHHHhcccceeeccccccccccccccchhhcccccEEEeecCCCeEEEEeCCCccccccccceeecccccccc
Q 003193 439 GYGMKMLLKRTEDLHLDELAGFKNVVHELDDEEGFARLRHLHVHNGPEILHILNSDGRVGTFPLLESLFLHNLINLE 515 (840)
Q Consensus 439 ~~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~~~~L~ 515 (840)
..+++|++|++++|......|..+ ..+++|++|++++|.-...+ +....+++|+.|++.+.+.+.
T Consensus 241 -----~~l~~L~~L~Ls~N~l~~~~p~~l---~~l~~L~~L~Ls~N~l~~~i----p~~~~l~~L~~l~l~~N~~lc 305 (313)
T 1ogq_A 241 -----GLSKNLNGLDLRNNRIYGTLPQGL---TQLKFLHSLNVSFNNLCGEI----PQGGNLQRFDVSAYANNKCLC 305 (313)
T ss_dssp -----CCCTTCCEEECCSSCCEECCCGGG---GGCTTCCEEECCSSEEEEEC----CCSTTGGGSCGGGTCSSSEEE
T ss_pred -----cccCCCCEEECcCCcccCcCChHH---hcCcCCCEEECcCCcccccC----CCCccccccChHHhcCCCCcc
Confidence 013677788888877665666666 67888999999888632222 223678888888888766544
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=99.86 E-value=5e-21 Score=202.54 Aligned_cols=220 Identities=22% Similarity=0.307 Sum_probs=176.4
Q ss_pred ccCCCcEEEeccCCcccCCccc-CCCcceeEeeccCccccCCCchhhcCCCCCcEEEcCCCCCCCCChhhcCCCCCCEEE
Q 003193 208 IDEAPTAISIPFRGIYELPERL-GFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPSSLGCLINLRTLS 286 (840)
Q Consensus 208 ~~~~l~~L~l~~~~~~~l~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~l~~l~~L~~L~ 286 (840)
....++.|+++++.+..+|..+ .+++|++|++++|.+. .+|..+ .++++|++|++++|.++.+|..++++++|++|+
T Consensus 79 ~~~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~-~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~ 156 (328)
T 4fcg_A 79 TQPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLM-ELPDTM-QQFAGLETLTLARNPLRALPASIASLNRLRELS 156 (328)
T ss_dssp TSTTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCC-CCCSCG-GGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEE
T ss_pred cccceeEEEccCCCchhcChhhhhCCCCCEEECCCCCcc-chhHHH-hccCCCCEEECCCCccccCcHHHhcCcCCCEEE
Confidence 3467899999999999998866 7999999999999988 788765 889999999999999999999999999999999
Q ss_pred ccCCccCC--cccccC---------CCCCCEEeecCCCCcccChhhcCCCCCCEEEccCCCCCCccCcccccCCCCCcEE
Q 003193 287 LENCLVVD--VAIIGD---------LKKLEILSLKHSSIEQLPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEEL 355 (840)
Q Consensus 287 L~~~~~~~--~~~i~~---------L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~L~~~~~l~~~p~~~l~~L~~L~~L 355 (840)
+++|.+.. |..++. +++|++|++++|.++.+|..++++++|++|++++ +.+..+|.. ++++++|++|
T Consensus 157 L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~-N~l~~l~~~-l~~l~~L~~L 234 (328)
T 4fcg_A 157 IRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRN-SPLSALGPA-IHHLPKLEEL 234 (328)
T ss_dssp EEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEES-SCCCCCCGG-GGGCTTCCEE
T ss_pred CCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccC-CCCCcCchh-hccCCCCCEE
Confidence 99987655 666554 9999999999999999999999999999999999 577888886 8999999999
Q ss_pred EccCCcccceecCCCCCCcccccCCCCCCeEEEecCCCC-CCCCcccccCcceEEEEEcCccCCCCCccccceEEEeeCC
Q 003193 356 YMGNSFTQWKVEGQSNASLGELKQLSRLTTLEVHIPDAQ-VMPQDLVFVELERFRICIGDVWSWSDGYETSKTLKLQLNN 434 (840)
Q Consensus 356 ~l~~~~~~~~~~~~~~~~l~~l~~l~~L~~L~l~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~l~~~~ 434 (840)
++++|......+ ..+..+++|+.|++++|... .+|.
T Consensus 235 ~Ls~n~~~~~~p-------~~~~~l~~L~~L~L~~n~~~~~~p~------------------------------------ 271 (328)
T 4fcg_A 235 DLRGCTALRNYP-------PIFGGRAPLKRLILKDCSNLLTLPL------------------------------------ 271 (328)
T ss_dssp ECTTCTTCCBCC-------CCTTCCCCCCEEECTTCTTCCBCCT------------------------------------
T ss_pred ECcCCcchhhhH-------HHhcCCCCCCEEECCCCCchhhcch------------------------------------
Confidence 999987654333 45667778888888765432 1211
Q ss_pred CccchhhHHHHHhcccceeeccccccccccccccchhhcccccEEEeecC
Q 003193 435 STYLGYGMKMLLKRTEDLHLDELAGFKNVVHELDDEEGFARLRHLHVHNG 484 (840)
Q Consensus 435 ~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~~~~l~~L~~L~l~~~ 484 (840)
++. .+++|+.|++++|...+.+|..+ +.+++|+.+.+...
T Consensus 272 ------~~~-~l~~L~~L~L~~n~~~~~iP~~l---~~L~~L~~l~l~~~ 311 (328)
T 4fcg_A 272 ------DIH-RLTQLEKLDLRGCVNLSRLPSLI---AQLPANCIILVPPH 311 (328)
T ss_dssp ------TGG-GCTTCCEEECTTCTTCCCCCGGG---GGSCTTCEEECCGG
T ss_pred ------hhh-cCCCCCEEeCCCCCchhhccHHH---hhccCceEEeCCHH
Confidence 111 14567777777777777777766 66777777766544
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=99.85 E-value=6.5e-21 Score=201.63 Aligned_cols=107 Identities=20% Similarity=0.341 Sum_probs=84.7
Q ss_pred CCCCCcEEEcCCCCCCCCChhhcCCCCCCEEEccCCccCC-cccccCCCCCCEEeecCCCCcccChhhcCCCCCCEEEcc
Q 003193 255 GMTELRVLDLTGFRFHSLPSSLGCLINLRTLSLENCLVVD-VAIIGDLKKLEILSLKHSSIEQLPREIGQLTCLKLLDLS 333 (840)
Q Consensus 255 ~l~~Lr~L~l~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~-~~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~L~ 333 (840)
...++++|++++|.++.+|+.++++++|++|++++|.+.. |..++++++|++|++++|.++.+|..++++++|++|+++
T Consensus 79 ~~~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~ 158 (328)
T 4fcg_A 79 TQPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSIR 158 (328)
T ss_dssp TSTTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEEE
T ss_pred cccceeEEEccCCCchhcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccccCcHHHhcCcCCCEEECC
Confidence 3567888888888888888888888888888888888887 777888888999999888888888888889999999998
Q ss_pred CCCCCCccCcccccC---------CCCCcEEEccCCcc
Q 003193 334 NCSKLKEIRPNVISN---------LTRLEELYMGNSFT 362 (840)
Q Consensus 334 ~~~~l~~~p~~~l~~---------L~~L~~L~l~~~~~ 362 (840)
+|+.++.+|.. ++. +++|++|++++|.+
T Consensus 159 ~n~~~~~~p~~-~~~~~~~~~~~~l~~L~~L~L~~n~l 195 (328)
T 4fcg_A 159 ACPELTELPEP-LASTDASGEHQGLVNLQSLRLEWTGI 195 (328)
T ss_dssp EETTCCCCCSC-SEEEC-CCCEEESTTCCEEEEEEECC
T ss_pred CCCCccccChh-HhhccchhhhccCCCCCEEECcCCCc
Confidence 88778877765 332 55555555554433
|
| >2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.85 E-value=2.4e-20 Score=198.35 Aligned_cols=237 Identities=17% Similarity=0.241 Sum_probs=170.0
Q ss_pred CCcEEEeccCCcccCCcccCCCcceeEeeccCccccCCCchhhcCCCCCcEEEcCCCCCCCC-ChhhcCCCCCCEEEccC
Q 003193 211 APTAISIPFRGIYELPERLGFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSL-PSSLGCLINLRTLSLEN 289 (840)
Q Consensus 211 ~l~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~l-p~~l~~l~~L~~L~L~~ 289 (840)
.++.++++++.+..+|..+ .+++++|++++|.+.. ++...|.++++|++|++++|.++.+ |..++++++|++|++++
T Consensus 34 ~l~~l~~~~~~l~~ip~~~-~~~l~~L~l~~n~i~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 111 (332)
T 2ft3_A 34 HLRVVQCSDLGLKAVPKEI-SPDTTLLDLQNNDISE-LRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISK 111 (332)
T ss_dssp ETTEEECCSSCCSSCCSCC-CTTCCEEECCSSCCCE-ECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCS
T ss_pred cCCEEECCCCCccccCCCC-CCCCeEEECCCCcCCc-cCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCC
Confidence 4778888888888887655 4688888988888764 4444458888999999999888866 67788889999999998
Q ss_pred CccCC-cccccCCCCCCEEeecCCCCcccChh-hcCCCCCCEEEccCCCCCCc--cCcccccCCCCCcEEEccCCcccce
Q 003193 290 CLVVD-VAIIGDLKKLEILSLKHSSIEQLPRE-IGQLTCLKLLDLSNCSKLKE--IRPNVISNLTRLEELYMGNSFTQWK 365 (840)
Q Consensus 290 ~~~~~-~~~i~~L~~L~~L~l~~~~l~~lp~~-i~~L~~L~~L~L~~~~~l~~--~p~~~l~~L~~L~~L~l~~~~~~~~ 365 (840)
|.+.. |..+. ++|++|++++|.++.+|.. +.++++|++|++++ +.+.. +++..++.+ +|++|++++|.+..
T Consensus 112 n~l~~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~- 186 (332)
T 2ft3_A 112 NHLVEIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGG-NPLENSGFEPGAFDGL-KLNYLRISEAKLTG- 186 (332)
T ss_dssp SCCCSCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCS-CCCBGGGSCTTSSCSC-CCSCCBCCSSBCSS-
T ss_pred CcCCccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCC-CccccCCCCcccccCC-ccCEEECcCCCCCc-
Confidence 88887 65555 7889999999888888754 78889999999988 45542 333446667 88888888887643
Q ss_pred ecCCCCCCcccccCCCCCCeEEEecCCCCCCCCcccccCcceEEEEEcCccCCCCCccccceEEEeeCCCccchhhHHHH
Q 003193 366 VEGQSNASLGELKQLSRLTTLEVHIPDAQVMPQDLVFVELERFRICIGDVWSWSDGYETSKTLKLQLNNSTYLGYGMKML 445 (840)
Q Consensus 366 ~~~~~~~~l~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~ 445 (840)
++ ..+ .++|+.|++++|.+...+.. .+..+++++.|+++++.....+......
T Consensus 187 l~-------~~~--~~~L~~L~l~~n~i~~~~~~------------------~l~~l~~L~~L~L~~N~l~~~~~~~~~~ 239 (332)
T 2ft3_A 187 IP-------KDL--PETLNELHLDHNKIQAIELE------------------DLLRYSKLYRLGLGHNQIRMIENGSLSF 239 (332)
T ss_dssp CC-------SSS--CSSCSCCBCCSSCCCCCCTT------------------SSTTCTTCSCCBCCSSCCCCCCTTGGGG
T ss_pred cC-------ccc--cCCCCEEECCCCcCCccCHH------------------HhcCCCCCCEEECCCCcCCcCChhHhhC
Confidence 11 111 15788888888877655422 1223344555555555554444332234
Q ss_pred HhcccceeeccccccccccccccchhhcccccEEEeecCC
Q 003193 446 LKRTEDLHLDELAGFKNVVHELDDEEGFARLRHLHVHNGP 485 (840)
Q Consensus 446 l~~L~~L~L~~~~~~~~~~~~l~~~~~l~~L~~L~l~~~~ 485 (840)
+++|+.|++++|... .+|..+ ..+++|++|++++|.
T Consensus 240 l~~L~~L~L~~N~l~-~lp~~l---~~l~~L~~L~l~~N~ 275 (332)
T 2ft3_A 240 LPTLRELHLDNNKLS-RVPAGL---PDLKLLQVVYLHTNN 275 (332)
T ss_dssp CTTCCEEECCSSCCC-BCCTTG---GGCTTCCEEECCSSC
T ss_pred CCCCCEEECCCCcCe-ecChhh---hcCccCCEEECCCCC
Confidence 678999999988644 666666 779999999999986
|
| >1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=8.6e-20 Score=194.03 Aligned_cols=277 Identities=13% Similarity=0.155 Sum_probs=157.0
Q ss_pred chhhhhhccCCCcEEEeccCCcccCCcc-c-CCCcceeEeeccCccccCCCchhhcCCCCCcEEEcCCCCCCCCChhhcC
Q 003193 201 LKEELDKIDEAPTAISIPFRGIYELPER-L-GFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPSSLGC 278 (840)
Q Consensus 201 ~~~~~~~~~~~l~~L~l~~~~~~~l~~~-~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~l~~ 278 (840)
+..+|....+.++.|++++|.+..++.. + .+++|++|++++|.+....|.. |.++++|++|++++|.++.+|..+.
T Consensus 43 l~~lp~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~-~~~l~~L~~L~Ls~n~l~~l~~~~~- 120 (330)
T 1xku_A 43 LEKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGA-FAPLVKLERLYLSKNQLKELPEKMP- 120 (330)
T ss_dssp CCSCCCSCCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTT-TTTCTTCCEEECCSSCCSBCCSSCC-
T ss_pred ccccCccCCCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHH-hcCCCCCCEEECCCCcCCccChhhc-
Confidence 3334444445666666666666555542 2 5666666666666655333333 3566666666666666666665543
Q ss_pred CCCCCEEEccCCccCC--cccccCCCCCCEEeecCCCCc---ccChhhcCCCCCCEEEccCCCCCCccCcccccCCCCCc
Q 003193 279 LINLRTLSLENCLVVD--VAIIGDLKKLEILSLKHSSIE---QLPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLE 353 (840)
Q Consensus 279 l~~L~~L~L~~~~~~~--~~~i~~L~~L~~L~l~~~~l~---~lp~~i~~L~~L~~L~L~~~~~l~~~p~~~l~~L~~L~ 353 (840)
++|++|++++|.+.. +..++++++|++|++++|.++ ..|..+.++++|++|++++ +.+..+|.. + .++|+
T Consensus 121 -~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~-n~l~~l~~~-~--~~~L~ 195 (330)
T 1xku_A 121 -KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIAD-TNITTIPQG-L--PPSLT 195 (330)
T ss_dssp -TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCS-SCCCSCCSS-C--CTTCS
T ss_pred -ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCC-CccccCCcc-c--cccCC
Confidence 566666666666655 234566666666666666554 2344556666666666666 455555543 2 25666
Q ss_pred EEEccCCcccceecCCCCCCcccccCCCCCCeEEEecCCCCCCCCcccccCcceEEEEEcCccCCCCCccccceEEEeeC
Q 003193 354 ELYMGNSFTQWKVEGQSNASLGELKQLSRLTTLEVHIPDAQVMPQDLVFVELERFRICIGDVWSWSDGYETSKTLKLQLN 433 (840)
Q Consensus 354 ~L~l~~~~~~~~~~~~~~~~l~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~l~~~ 433 (840)
+|++++|.+.... ...+..+++|+.|++++|.+...+. ..+...++++.|+++++
T Consensus 196 ~L~l~~n~l~~~~-------~~~~~~l~~L~~L~Ls~n~l~~~~~------------------~~~~~l~~L~~L~L~~N 250 (330)
T 1xku_A 196 ELHLDGNKITKVD-------AASLKGLNNLAKLGLSFNSISAVDN------------------GSLANTPHLRELHLNNN 250 (330)
T ss_dssp EEECTTSCCCEEC-------TGGGTTCTTCCEEECCSSCCCEECT------------------TTGGGSTTCCEEECCSS
T ss_pred EEECCCCcCCccC-------HHHhcCCCCCCEEECCCCcCceeCh------------------hhccCCCCCCEEECCCC
Confidence 6666666543221 1345556666666666665544332 12344556667777777
Q ss_pred CCccchhhHHHHHhcccceeeccccccccccccccc---hhhcccccEEEeecCCCeEEEEeCCCccccccccceeeccc
Q 003193 434 NSTYLGYGMKMLLKRTEDLHLDELAGFKNVVHELDD---EEGFARLRHLHVHNGPEILHILNSDGRVGTFPLLESLFLHN 510 (840)
Q Consensus 434 ~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~---~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~ 510 (840)
....+|.++.. +++|+.|++++|......+..+.+ ....+.|+.|++.+++.. .+.........+++|+.+++++
T Consensus 251 ~l~~lp~~l~~-l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~-~~~i~~~~f~~~~~l~~l~L~~ 328 (330)
T 1xku_A 251 KLVKVPGGLAD-HKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQ-YWEIQPSTFRCVYVRAAVQLGN 328 (330)
T ss_dssp CCSSCCTTTTT-CSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSC-GGGSCGGGGTTCCCGGGEEC--
T ss_pred cCccCChhhcc-CCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCccc-ccccCccccccccceeEEEecc
Confidence 66667766543 678888888887654332223311 023578899999988731 1111122345667788888876
Q ss_pred c
Q 003193 511 L 511 (840)
Q Consensus 511 ~ 511 (840)
.
T Consensus 329 N 329 (330)
T 1xku_A 329 Y 329 (330)
T ss_dssp -
T ss_pred c
Confidence 3
|
| >2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.83 E-value=4.5e-20 Score=198.10 Aligned_cols=191 Identities=20% Similarity=0.232 Sum_probs=104.2
Q ss_pred EEeccCCcccCCcccCCCcceeEeeccCccccCCCchhhcCCCCCcEEEcCCCCCCCC-ChhhcCCCCCCEEEccCCccC
Q 003193 215 ISIPFRGIYELPERLGFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSL-PSSLGCLINLRTLSLENCLVV 293 (840)
Q Consensus 215 L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~l-p~~l~~l~~L~~L~L~~~~~~ 293 (840)
.+.+++.+..+|..+. ++|++|++++|.+. .++...+.++++|++|++++|.++.+ |..++++++|++|++++|.++
T Consensus 36 c~~~~~~l~~iP~~~~-~~L~~L~l~~n~i~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~ 113 (353)
T 2z80_A 36 CKGSSGSLNSIPSGLT-EAVKSLDLSNNRIT-YISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLS 113 (353)
T ss_dssp EECCSTTCSSCCTTCC-TTCCEEECTTSCCC-EECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCS
T ss_pred eeCCCCCccccccccc-ccCcEEECCCCcCc-ccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCC
Confidence 4455555555554332 35666666665554 23333345666666666666666544 344666666666666666665
Q ss_pred C-ccc-ccCCCCCCEEeecCCCCcccCh--hhcCCCCCCEEEccCCCCCCccCcccccCCCCCcEEEccCCcccceecCC
Q 003193 294 D-VAI-IGDLKKLEILSLKHSSIEQLPR--EIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGNSFTQWKVEGQ 369 (840)
Q Consensus 294 ~-~~~-i~~L~~L~~L~l~~~~l~~lp~--~i~~L~~L~~L~L~~~~~l~~~p~~~l~~L~~L~~L~l~~~~~~~~~~~~ 369 (840)
. +.. ++++++|++|++++|.++.+|. .+.++++|++|++++|+.+..+++..++++++|++|++++|.+....+
T Consensus 114 ~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-- 191 (353)
T 2z80_A 114 NLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEP-- 191 (353)
T ss_dssp SCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECT--
T ss_pred cCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCH--
Confidence 5 322 5566666666666666666654 455666666666666445555554445666666666666655432211
Q ss_pred CCCCcccccCCCCCCeEEEecCCCCCCCCcc--cccCcceEEEEEcC
Q 003193 370 SNASLGELKQLSRLTTLEVHIPDAQVMPQDL--VFVELERFRICIGD 414 (840)
Q Consensus 370 ~~~~l~~l~~l~~L~~L~l~~~~~~~~~~~~--~~~~L~~L~l~~~~ 414 (840)
..+.++++|+.|++++|.+..++... .+++|+.|++..+.
T Consensus 192 -----~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~ 233 (353)
T 2z80_A 192 -----KSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTD 233 (353)
T ss_dssp -----TTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCB
T ss_pred -----HHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCc
Confidence 34445556666666666554444332 34555555555433
|
| >3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* | Back alignment and structure |
|---|
Probab=99.83 E-value=8.9e-22 Score=227.74 Aligned_cols=409 Identities=15% Similarity=0.059 Sum_probs=242.1
Q ss_pred CCCcceeEeeccCccccCCCchhhcCCCC-CcEEEcCCCCC-C--CCChhhcCCCCCCEEEccCCccCCc------cccc
Q 003193 230 GFLKLKLFLFFTENLSLQIPDPFFEGMTE-LRVLDLTGFRF-H--SLPSSLGCLINLRTLSLENCLVVDV------AIIG 299 (840)
Q Consensus 230 ~~~~L~~L~l~~~~~~~~~~~~~~~~l~~-Lr~L~l~~~~~-~--~lp~~l~~l~~L~~L~L~~~~~~~~------~~i~ 299 (840)
.+++|++|+++++.+....+..+...++. |++|++++|.. + .++..+.++++|++|++++|.+.+. ....
T Consensus 110 ~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~ 189 (592)
T 3ogk_B 110 NLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQ 189 (592)
T ss_dssp HCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHH
T ss_pred hCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHh
Confidence 57899999999887654433333222344 99999998862 2 3444456889999999999987652 2456
Q ss_pred CCCCCCEEeecCCCCc-----ccChhhcCCCCCCEEEccCCCCCCccCcccccCCCCCcEEEccCCcccceecCCCCCCc
Q 003193 300 DLKKLEILSLKHSSIE-----QLPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGNSFTQWKVEGQSNASL 374 (840)
Q Consensus 300 ~L~~L~~L~l~~~~l~-----~lp~~i~~L~~L~~L~L~~~~~l~~~p~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~l 374 (840)
++++|++|++++|.++ .++..+.++++|++|++++| .+..+|.. ++++++|++|+++...... ......
T Consensus 190 ~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~-~~~~l~~~-~~~~~~L~~L~l~~~~~~~----~~~~~~ 263 (592)
T 3ogk_B 190 HNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDF-EILELVGF-FKAAANLEEFCGGSLNEDI----GMPEKY 263 (592)
T ss_dssp HCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSC-BGGGGHHH-HHHCTTCCEEEECBCCCCT----TCTTSS
T ss_pred cCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCc-cHHHHHHH-HhhhhHHHhhccccccccc----chHHHH
Confidence 7899999999999876 45566778999999999994 56667754 8899999999997532211 111233
Q ss_pred ccccCCCCCCeEEEecCCCCCCCCcccccCcceEEEEEcCccCCCCCccccceEEEeeCCCccchhhHHHHHhcccceee
Q 003193 375 GELKQLSRLTTLEVHIPDAQVMPQDLVFVELERFRICIGDVWSWSDGYETSKTLKLQLNNSTYLGYGMKMLLKRTEDLHL 454 (840)
Q Consensus 375 ~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~L 454 (840)
..+..+++|+.|+++......++... .. +++|++|++
T Consensus 264 ~~l~~~~~L~~L~l~~~~~~~l~~~~-------------------~~------------------------~~~L~~L~L 300 (592)
T 3ogk_B 264 MNLVFPRKLCRLGLSYMGPNEMPILF-------------------PF------------------------AAQIRKLDL 300 (592)
T ss_dssp SCCCCCTTCCEEEETTCCTTTGGGGG-------------------GG------------------------GGGCCEEEE
T ss_pred HHhhccccccccCccccchhHHHHHH-------------------hh------------------------cCCCcEEec
Confidence 55666777888877654332222211 11 344555555
Q ss_pred cccccccccc-ccccchhhcccccEEEeecCCCeEEEEeCCCccccccccceeeccc----------ccccccccccccc
Q 003193 455 DELAGFKNVV-HELDDEEGFARLRHLHVHNGPEILHILNSDGRVGTFPLLESLFLHN----------LINLEKVCDGKVR 523 (840)
Q Consensus 455 ~~~~~~~~~~-~~l~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~----------~~~L~~~~~~~~~ 523 (840)
++|....... ..+ ..+++|++|++.++-.-..+ ......+++|++|++.+ |..+.......+
T Consensus 301 s~~~l~~~~~~~~~---~~~~~L~~L~L~~~~~~~~l---~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l- 373 (592)
T 3ogk_B 301 LYALLETEDHCTLI---QKCPNLEVLETRNVIGDRGL---EVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIAL- 373 (592)
T ss_dssp TTCCCCHHHHHHHH---TTCTTCCEEEEEGGGHHHHH---HHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHH-
T ss_pred CCCcCCHHHHHHHH---HhCcCCCEEeccCccCHHHH---HHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHH-
Confidence 5444111111 111 34556666665532100000 00013455666666663 444432211100
Q ss_pred cCCCCcccCCccEEEEecCCCcccccchhHHhhcccccEEEEec---ccccceeeccccccccccCCcccccccccccee
Q 003193 524 LNEDDKSFSNLRIIKVEGCHRVKHLFPFSLVKNLLQLQKVKVTD---CTNLKLIVGKESENSAHKNGSISGVYFRKLHFL 600 (840)
Q Consensus 524 ~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~i~~---c~~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L 600 (840)
...+++|++|.+ .|..++..........+++|++|++.+ |+.+...+.... -...+..+++|++|
T Consensus 374 ----~~~~~~L~~L~l-~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~-------~~~~~~~~~~L~~L 441 (592)
T 3ogk_B 374 ----AQGCQELEYMAV-YVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNG-------VRSLLIGCKKLRRF 441 (592)
T ss_dssp ----HHHCTTCSEEEE-EESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHH-------HHHHHHHCTTCCEE
T ss_pred ----HhhCccCeEEEe-ecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHH-------HHHHHHhCCCCCEE
Confidence 134788888888 566676653333445588888888884 445554321100 00113368888899
Q ss_pred ecccCcc-cccccCCCCCCCccCCCCCcccccCCCCCcccccccccccCCcceEecccccchhhcccCCccccccCCCce
Q 003193 601 KLQHLPQ-LTSSGFDLETPTNTQGSNPGIIAEGDPKDFTSLFNERVVFPSLKKLKLSSINVEKIWLNSFSAIESWGKNLT 679 (840)
Q Consensus 601 ~l~~c~~-L~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~l~~~~~~~~~~~~~~l~~L~ 679 (840)
++..|.+ +..-. .......+++|++|+|++|.+++.....+ ...+++|+
T Consensus 442 ~L~~~~~~l~~~~---------------------------~~~~~~~~~~L~~L~L~~n~l~~~~~~~~---~~~~~~L~ 491 (592)
T 3ogk_B 442 AFYLRQGGLTDLG---------------------------LSYIGQYSPNVRWMLLGYVGESDEGLMEF---SRGCPNLQ 491 (592)
T ss_dssp EEECCGGGCCHHH---------------------------HHHHHHSCTTCCEEEECSCCSSHHHHHHH---HTCCTTCC
T ss_pred EEecCCCCccHHH---------------------------HHHHHHhCccceEeeccCCCCCHHHHHHH---HhcCcccC
Confidence 8887764 22110 00011247889999999997765322111 24669999
Q ss_pred EEEecccCCcceeechhhHhhhcccceeeecccccchhhhccCcccccCccccccccccccccccC
Q 003193 680 KLTVEKCGRLKFLFSSSMVNGLEQLQQLDISHCKSMNEVINTRVGRDDNMIEMVFPKLVSLQLSHL 745 (840)
Q Consensus 680 ~L~i~~C~~L~~l~~~~~~~~l~sL~~L~i~~C~~L~~i~~~~~~~~~~~~~~~l~sL~~L~i~~c 745 (840)
.|+|++|+ ++......+...+++|++|++++|. ++.. +... ....+|.|+...|...
T Consensus 492 ~L~l~~n~-l~~~~~~~~~~~l~~L~~L~ls~n~-it~~-----~~~~--l~~~~p~l~~~~~~~~ 548 (592)
T 3ogk_B 492 KLEMRGCC-FSERAIAAAVTKLPSLRYLWVQGYR-ASMT-----GQDL--MQMARPYWNIELIPSR 548 (592)
T ss_dssp EEEEESCC-CBHHHHHHHHHHCSSCCEEEEESCB-CCTT-----CTTG--GGGCCTTEEEEEECCC
T ss_pred eeeccCCC-CcHHHHHHHHHhcCccCeeECcCCc-CCHH-----HHHH--HHHhCCCcEEEEecCc
Confidence 99999998 6554334556789999999999998 5432 2211 1122666666555443
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.83 E-value=6.1e-20 Score=192.92 Aligned_cols=174 Identities=22% Similarity=0.243 Sum_probs=121.4
Q ss_pred cEEEeccCCcccCCcccCCCcceeEeeccCccccCCCchhhcCCCCCcEEEcCCCCCCCC---ChhhcCCCCCCEEEccC
Q 003193 213 TAISIPFRGIYELPERLGFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSL---PSSLGCLINLRTLSLEN 289 (840)
Q Consensus 213 ~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~l---p~~l~~l~~L~~L~L~~ 289 (840)
+.++.+++.+..+|..+ .+++++|++++|.+. .+|..+|.++++|++|++++|.++.+ |..+..+++|++|++++
T Consensus 10 ~~l~c~~~~l~~ip~~~-~~~l~~L~L~~n~l~-~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~ 87 (306)
T 2z66_A 10 TEIRCNSKGLTSVPTGI-PSSATRLELESNKLQ-SLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSF 87 (306)
T ss_dssp TEEECCSSCCSSCCSCC-CTTCCEEECCSSCCC-CCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCS
T ss_pred CEEEcCCCCcccCCCCC-CCCCCEEECCCCccC-ccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCC
Confidence 35666666676676644 257777777777765 56666667788888888888877644 56677778888888888
Q ss_pred CccCC-cccccCCCCCCEEeecCCCCcccCh--hhcCCCCCCEEEccCCCCCCccCcccccCCCCCcEEEccCCcccc-e
Q 003193 290 CLVVD-VAIIGDLKKLEILSLKHSSIEQLPR--EIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGNSFTQW-K 365 (840)
Q Consensus 290 ~~~~~-~~~i~~L~~L~~L~l~~~~l~~lp~--~i~~L~~L~~L~L~~~~~l~~~p~~~l~~L~~L~~L~l~~~~~~~-~ 365 (840)
|.+.. +..+.++++|++|++++|.++.+|. .+..+++|++|++++ +.+...++..++.+++|++|++++|.+.. .
T Consensus 88 n~i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 166 (306)
T 2z66_A 88 NGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISH-THTRVAFNGIFNGLSSLEVLKMAGNSFQENF 166 (306)
T ss_dssp CSEEEEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTT-SCCEECSTTTTTTCTTCCEEECTTCEEGGGE
T ss_pred CccccChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCC-CcCCccchhhcccCcCCCEEECCCCcccccc
Confidence 87777 6667778888888888887777664 577778888888877 45555555557777888888887776542 1
Q ss_pred ecCCCCCCcccccCCCCCCeEEEecCCCCCC
Q 003193 366 VEGQSNASLGELKQLSRLTTLEVHIPDAQVM 396 (840)
Q Consensus 366 ~~~~~~~~l~~l~~l~~L~~L~l~~~~~~~~ 396 (840)
.+ ..+..+++|+.|++++|.+..+
T Consensus 167 ~~-------~~~~~l~~L~~L~Ls~n~l~~~ 190 (306)
T 2z66_A 167 LP-------DIFTELRNLTFLDLSQCQLEQL 190 (306)
T ss_dssp EC-------SCCTTCTTCCEEECTTSCCCEE
T ss_pred ch-------hHHhhCcCCCEEECCCCCcCCc
Confidence 11 3456677777777777765543
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=1.8e-19 Score=187.13 Aligned_cols=192 Identities=21% Similarity=0.319 Sum_probs=140.9
Q ss_pred CccchhhhhhccCCCcEEEeccCCcccCCcc-c-CCCcceeEeeccCccccCCCchhhcCCCCCcEEEcCCCC-CCCC-C
Q 003193 198 VADLKEELDKIDEAPTAISIPFRGIYELPER-L-GFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFR-FHSL-P 273 (840)
Q Consensus 198 ~~~~~~~~~~~~~~l~~L~l~~~~~~~l~~~-~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~-~~~l-p 273 (840)
+..+..+|...++++++|++++|.+..++.. + .+++|++|++++|.+....+. .|.++++|++|++++|. +..+ |
T Consensus 20 ~~~l~~ip~~~~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~l~~n~~l~~~~~ 98 (285)
T 1ozn_A 20 QQGLQAVPVGIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAA-AFTGLALLEQLDLSDNAQLRSVDP 98 (285)
T ss_dssp SSCCSSCCTTCCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTT-TTTTCTTCCEEECCSCTTCCCCCT
T ss_pred cCCcccCCcCCCCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHh-hcCCccCCCEEeCCCCCCccccCH
Confidence 3445555666677888888888888776643 2 678888888888876643343 44778888888888886 7766 6
Q ss_pred hhhcCCCCCCEEEccCCccCC--cccccCCCCCCEEeecCCCCcccChh-hcCCCCCCEEEccCCCCCCccCcccccCCC
Q 003193 274 SSLGCLINLRTLSLENCLVVD--VAIIGDLKKLEILSLKHSSIEQLPRE-IGQLTCLKLLDLSNCSKLKEIRPNVISNLT 350 (840)
Q Consensus 274 ~~l~~l~~L~~L~L~~~~~~~--~~~i~~L~~L~~L~l~~~~l~~lp~~-i~~L~~L~~L~L~~~~~l~~~p~~~l~~L~ 350 (840)
..+..+++|++|++++|.+.. +..++++++|++|++++|.++.+|.. ++++++|++|++++ +.+..+|...+..++
T Consensus 99 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~l~ 177 (285)
T 1ozn_A 99 ATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHG-NRISSVPERAFRGLH 177 (285)
T ss_dssp TTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS-SCCCEECTTTTTTCT
T ss_pred HHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCC-CcccccCHHHhcCcc
Confidence 677888888888888888777 46677888888888888888877654 67888888888888 567777776677888
Q ss_pred CCcEEEccCCcccceecCCCCCCcccccCCCCCCeEEEecCCCCCCCC
Q 003193 351 RLEELYMGNSFTQWKVEGQSNASLGELKQLSRLTTLEVHIPDAQVMPQ 398 (840)
Q Consensus 351 ~L~~L~l~~~~~~~~~~~~~~~~l~~l~~l~~L~~L~l~~~~~~~~~~ 398 (840)
+|++|++++|.+....+ ..+..+++|+.|++++|.+..++.
T Consensus 178 ~L~~L~l~~n~l~~~~~-------~~~~~l~~L~~L~l~~n~l~~~~~ 218 (285)
T 1ozn_A 178 SLDRLLLHQNRVAHVHP-------HAFRDLGRLMTLYLFANNLSALPT 218 (285)
T ss_dssp TCCEEECCSSCCCEECT-------TTTTTCTTCCEEECCSSCCSCCCH
T ss_pred ccCEEECCCCcccccCH-------hHccCcccccEeeCCCCcCCcCCH
Confidence 88888888876653322 456667788888888877765553
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A | Back alignment and structure |
|---|
Probab=99.82 E-value=1.6e-19 Score=200.78 Aligned_cols=174 Identities=22% Similarity=0.290 Sum_probs=136.8
Q ss_pred CcEEEeccCCcccCCcccCCCcceeEeeccCccccCCCchhhcCCCCCcEEEcCCCCCCCC-ChhhcCCCCCCEEEccCC
Q 003193 212 PTAISIPFRGIYELPERLGFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSL-PSSLGCLINLRTLSLENC 290 (840)
Q Consensus 212 l~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~l-p~~l~~l~~L~~L~L~~~ 290 (840)
.+.++..+..+..+|..+. ++++.|++++|.+....+ ..|.++++|++|++++|.++.+ |..|.++++|++|+|++|
T Consensus 56 ~~~v~c~~~~l~~iP~~~~-~~l~~L~L~~n~i~~~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n 133 (452)
T 3zyi_A 56 FSKVVCTRRGLSEVPQGIP-SNTRYLNLMENNIQMIQA-DTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDN 133 (452)
T ss_dssp SCEEECCSSCCSSCCSCCC-TTCSEEECCSSCCCEECT-TTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CcEEEECCCCcCccCCCCC-CCccEEECcCCcCceECH-HHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCC
Confidence 4567777777777776543 678888888888765444 4458889999999999988866 467888899999999999
Q ss_pred ccCC--cccccCCCCCCEEeecCCCCcccCh-hhcCCCCCCEEEccCCCCCCccCcccccCCCCCcEEEccCCcccceec
Q 003193 291 LVVD--VAIIGDLKKLEILSLKHSSIEQLPR-EIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGNSFTQWKVE 367 (840)
Q Consensus 291 ~~~~--~~~i~~L~~L~~L~l~~~~l~~lp~-~i~~L~~L~~L~L~~~~~l~~~p~~~l~~L~~L~~L~l~~~~~~~~~~ 367 (840)
.++. +..++++++|++|++++|.++.+|. .+.++++|++|++++|+.++.++...+.++++|++|++++|.+..
T Consensus 134 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~--- 210 (452)
T 3zyi_A 134 WLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKD--- 210 (452)
T ss_dssp CCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSS---
T ss_pred cCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccc---
Confidence 8887 3458888999999999998888875 578889999999998888888888778888999999998886642
Q ss_pred CCCCCCcccccCCCCCCeEEEecCCCCCC
Q 003193 368 GQSNASLGELKQLSRLTTLEVHIPDAQVM 396 (840)
Q Consensus 368 ~~~~~~l~~l~~l~~L~~L~l~~~~~~~~ 396 (840)
+..+..+++|+.|++++|.+..+
T Consensus 211 ------~~~~~~l~~L~~L~Ls~N~l~~~ 233 (452)
T 3zyi_A 211 ------MPNLTPLVGLEELEMSGNHFPEI 233 (452)
T ss_dssp ------CCCCTTCTTCCEEECTTSCCSEE
T ss_pred ------cccccccccccEEECcCCcCccc
Confidence 23467778888888888776544
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.82 E-value=1.7e-19 Score=199.85 Aligned_cols=174 Identities=20% Similarity=0.318 Sum_probs=131.4
Q ss_pred CcEEEeccCCcccCCcccCCCcceeEeeccCccccCCCchhhcCCCCCcEEEcCCCCCCCCC-hhhcCCCCCCEEEccCC
Q 003193 212 PTAISIPFRGIYELPERLGFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLP-SSLGCLINLRTLSLENC 290 (840)
Q Consensus 212 l~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp-~~l~~l~~L~~L~L~~~ 290 (840)
.+.++..+..+..+|..+. ++++.|++++|.+.. ++...|.++++|++|++++|.++.++ ..|.++++|++|+|++|
T Consensus 45 ~~~v~c~~~~l~~iP~~~~-~~l~~L~L~~n~i~~-~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n 122 (440)
T 3zyj_A 45 FSKVICVRKNLREVPDGIS-TNTRLLNLHENQIQI-IKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDN 122 (440)
T ss_dssp SCEEECCSCCCSSCCSCCC-TTCSEEECCSCCCCE-ECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSS
T ss_pred CCEEEeCCCCcCcCCCCCC-CCCcEEEccCCcCCe-eCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCC
Confidence 4566677777777776543 677888888887664 33344578888888888888888664 56888888888888888
Q ss_pred ccCC-c-ccccCCCCCCEEeecCCCCcccCh-hhcCCCCCCEEEccCCCCCCccCcccccCCCCCcEEEccCCcccceec
Q 003193 291 LVVD-V-AIIGDLKKLEILSLKHSSIEQLPR-EIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGNSFTQWKVE 367 (840)
Q Consensus 291 ~~~~-~-~~i~~L~~L~~L~l~~~~l~~lp~-~i~~L~~L~~L~L~~~~~l~~~p~~~l~~L~~L~~L~l~~~~~~~~~~ 367 (840)
.++. + ..+.++++|++|++++|.++.+|. .+.++++|++|++++|+.+..++...+.++++|++|++++|.+.
T Consensus 123 ~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~---- 198 (440)
T 3zyj_A 123 RLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR---- 198 (440)
T ss_dssp CCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS----
T ss_pred cCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc----
Confidence 8877 3 468888888888888888887765 57788888888888888888888777888888888888888654
Q ss_pred CCCCCCcccccCCCCCCeEEEecCCCCCC
Q 003193 368 GQSNASLGELKQLSRLTTLEVHIPDAQVM 396 (840)
Q Consensus 368 ~~~~~~l~~l~~l~~L~~L~l~~~~~~~~ 396 (840)
.+..+..+++|+.|++++|.+..+
T Consensus 199 -----~~~~~~~l~~L~~L~Ls~N~l~~~ 222 (440)
T 3zyj_A 199 -----EIPNLTPLIKLDELDLSGNHLSAI 222 (440)
T ss_dssp -----SCCCCTTCSSCCEEECTTSCCCEE
T ss_pred -----cccccCCCcccCEEECCCCccCcc
Confidence 223466777888888887776544
|
| >2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.82 E-value=3.2e-19 Score=191.52 Aligned_cols=280 Identities=20% Similarity=0.197 Sum_probs=189.3
Q ss_pred CCCcceeEeeccCccccCCCchhhcCCCCCcEEEcCCCCCCCCCh-hhcCCCCCCEEEccCCccCC--cccccCCCCCCE
Q 003193 230 GFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPS-SLGCLINLRTLSLENCLVVD--VAIIGDLKKLEI 306 (840)
Q Consensus 230 ~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~-~l~~l~~L~~L~L~~~~~~~--~~~i~~L~~L~~ 306 (840)
.++.....+.+++.+. .+|..++ ++|++|++++|.++.+|. .+.++++|++|++++|.++. +..++++++|++
T Consensus 29 ~C~~~~~c~~~~~~l~-~iP~~~~---~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 104 (353)
T 2z80_A 29 SCDRNGICKGSSGSLN-SIPSGLT---EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEH 104 (353)
T ss_dssp EECTTSEEECCSTTCS-SCCTTCC---TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCE
T ss_pred CCCCCeEeeCCCCCcc-ccccccc---ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCE
Confidence 3445555677766665 6777553 589999999999998866 79999999999999999888 567999999999
Q ss_pred EeecCCCCcccChh-hcCCCCCCEEEccCCCCCCccCc-ccccCCCCCcEEEccCCcccceecCCCCCCcccccCCCCCC
Q 003193 307 LSLKHSSIEQLPRE-IGQLTCLKLLDLSNCSKLKEIRP-NVISNLTRLEELYMGNSFTQWKVEGQSNASLGELKQLSRLT 384 (840)
Q Consensus 307 L~l~~~~l~~lp~~-i~~L~~L~~L~L~~~~~l~~~p~-~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~l~~L~ 384 (840)
|++++|+++.+|.. ++++++|++|++++ +.+..+|. ..++++++|++|++++|...... ....+.++++|+
T Consensus 105 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~-n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~------~~~~~~~l~~L~ 177 (353)
T 2z80_A 105 LDLSYNYLSNLSSSWFKPLSSLTFLNLLG-NPYKTLGETSLFSHLTKLQILRVGNMDTFTKI------QRKDFAGLTFLE 177 (353)
T ss_dssp EECCSSCCSSCCHHHHTTCTTCSEEECTT-CCCSSSCSSCSCTTCTTCCEEEEEESSSCCEE------CTTTTTTCCEEE
T ss_pred EECCCCcCCcCCHhHhCCCccCCEEECCC-CCCcccCchhhhccCCCCcEEECCCCcccccc------CHHHccCCCCCC
Confidence 99999999999877 89999999999999 57888887 55889999999999988422121 124567788899
Q ss_pred eEEEecCCCCCCCCcccccCcceEEEEEcCccCCCCCccccceEEEeeCCCccchhhHHHHHhcccceeecccccccccc
Q 003193 385 TLEVHIPDAQVMPQDLVFVELERFRICIGDVWSWSDGYETSKTLKLQLNNSTYLGYGMKMLLKRTEDLHLDELAGFKNVV 464 (840)
Q Consensus 385 ~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~ 464 (840)
.|++++|.+..... ..+...++++.|+++++.....+..+...+++|+.|+++++......+
T Consensus 178 ~L~l~~n~l~~~~~------------------~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~ 239 (353)
T 2z80_A 178 ELEIDASDLQSYEP------------------KSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHF 239 (353)
T ss_dssp EEEEEETTCCEECT------------------TTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCC
T ss_pred EEECCCCCcCccCH------------------HHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccc
Confidence 99999887654421 223444556667777777667776666667888888888876443322
Q ss_pred ccccchhhcccccEEEeecCCCeEEEEeCCCccccccccceeecccccccccccccccccCCCCcccCCccEEEEecCCC
Q 003193 465 HELDDEEGFARLRHLHVHNGPEILHILNSDGRVGTFPLLESLFLHNLINLEKVCDGKVRLNEDDKSFSNLRIIKVEGCHR 544 (840)
Q Consensus 465 ~~l~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~ 544 (840)
..+......+.++.+++.++. +.+ ..+..++. ....+++|+.|+++++ +
T Consensus 240 ~~l~~~~~~~~l~~l~L~~~~----------------------l~~-~~l~~l~~-------~l~~l~~L~~L~Ls~N-~ 288 (353)
T 2z80_A 240 SELSTGETNSLIKKFTFRNVK----------------------ITD-ESLFQVMK-------LLNQISGLLELEFSRN-Q 288 (353)
T ss_dssp C------CCCCCCEEEEESCB----------------------CCH-HHHHHHHH-------HHHTCTTCCEEECCSS-C
T ss_pred cccccccccchhhcccccccc----------------------ccC-cchhhhHH-------HHhcccCCCEEECCCC-C
Confidence 222111223444555544432 111 01111111 1235667777777765 4
Q ss_pred cccccchhHHhhcccccEEEEecccc
Q 003193 545 VKHLFPFSLVKNLLQLQKVKVTDCTN 570 (840)
Q Consensus 545 L~~l~~~~~~~~l~~L~~L~i~~c~~ 570 (840)
++.+++ ..+..+++|++|++++++-
T Consensus 289 l~~i~~-~~~~~l~~L~~L~L~~N~~ 313 (353)
T 2z80_A 289 LKSVPD-GIFDRLTSLQKIWLHTNPW 313 (353)
T ss_dssp CCCCCT-TTTTTCTTCCEEECCSSCB
T ss_pred CCccCH-HHHhcCCCCCEEEeeCCCc
Confidence 555543 2335677777777777653
|
| >2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* | Back alignment and structure |
|---|
Probab=99.82 E-value=1.1e-21 Score=227.21 Aligned_cols=130 Identities=20% Similarity=0.229 Sum_probs=70.9
Q ss_pred CCCcceeEeeccCccccCCCchhhcCCCCCcEEEcCCC-CCCC--CChhhcCCCCCCEEEccCCccCC--cccc----cC
Q 003193 230 GFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGF-RFHS--LPSSLGCLINLRTLSLENCLVVD--VAII----GD 300 (840)
Q Consensus 230 ~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~l~~~-~~~~--lp~~l~~l~~L~~L~L~~~~~~~--~~~i----~~ 300 (840)
.+++|+.|+++++.+....+..+...+++|++|++++| .++. ++..+.++++|++|++++|.+++ +..+ ..
T Consensus 103 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~ 182 (594)
T 2p1m_B 103 SYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDT 182 (594)
T ss_dssp HCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTT
T ss_pred hCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhc
Confidence 35566666666665544333333334666677776666 3332 44444466667777776666544 2222 24
Q ss_pred CCCCCEEeecCCC--Cc--ccChhhcCCCCCCEEEccCCCCCCccCcccccCCCCCcEEEccCC
Q 003193 301 LKKLEILSLKHSS--IE--QLPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGNS 360 (840)
Q Consensus 301 L~~L~~L~l~~~~--l~--~lp~~i~~L~~L~~L~L~~~~~l~~~p~~~l~~L~~L~~L~l~~~ 360 (840)
+++|++|++++|. +. .++.-+.++++|++|++++|..+..++.. +.++++|++|++..+
T Consensus 183 ~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~-~~~~~~L~~L~l~~~ 245 (594)
T 2p1m_B 183 YTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATL-LQRAPQLEELGTGGY 245 (594)
T ss_dssp CCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHH-HHHCTTCSEEECSBC
T ss_pred CCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHH-HhcCCcceEcccccc
Confidence 5566666666664 21 22222344566666666665555554433 556666666665543
|
| >1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I | Back alignment and structure |
|---|
Probab=99.82 E-value=4.8e-22 Score=222.41 Aligned_cols=158 Identities=21% Similarity=0.210 Sum_probs=100.8
Q ss_pred CcceeEeeccCccccCCCchhhcCCCCCcEEEcCCCCCC-----CCChhhcCCCCCCEEEccCCccCC--cccc-cCCC-
Q 003193 232 LKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFH-----SLPSSLGCLINLRTLSLENCLVVD--VAII-GDLK- 302 (840)
Q Consensus 232 ~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~-----~lp~~l~~l~~L~~L~L~~~~~~~--~~~i-~~L~- 302 (840)
+++++|+++++.+.......++..+++|++|++++|.++ .+|..+..+++|++|++++|.+.+ +..+ ..+.
T Consensus 3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~ 82 (461)
T 1z7x_W 3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT 82 (461)
T ss_dssp EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhh
Confidence 456777777766554333444677788888888888876 456777788888888888887765 3333 2344
Q ss_pred ---CCCEEeecCCCCc-----ccChhhcCCCCCCEEEccCCCCCCccCc-----ccccCCCCCcEEEccCCcccceecCC
Q 003193 303 ---KLEILSLKHSSIE-----QLPREIGQLTCLKLLDLSNCSKLKEIRP-----NVISNLTRLEELYMGNSFTQWKVEGQ 369 (840)
Q Consensus 303 ---~L~~L~l~~~~l~-----~lp~~i~~L~~L~~L~L~~~~~l~~~p~-----~~l~~L~~L~~L~l~~~~~~~~~~~~ 369 (840)
+|++|++++|.++ .+|..+.++++|++|++++| .+..... ......++|++|++++|.+.....
T Consensus 83 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n-~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~-- 159 (461)
T 1z7x_W 83 PSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDN-LLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASC-- 159 (461)
T ss_dssp TTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSS-BCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGH--
T ss_pred CCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCC-cCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHH--
Confidence 6888888888777 45777788888888888884 3443211 112235578888888775542110
Q ss_pred CCCCcccccCCCCCCeEEEecCCC
Q 003193 370 SNASLGELKQLSRLTTLEVHIPDA 393 (840)
Q Consensus 370 ~~~~l~~l~~l~~L~~L~l~~~~~ 393 (840)
......+..+++|+.|++++|.+
T Consensus 160 -~~l~~~l~~~~~L~~L~L~~n~i 182 (461)
T 1z7x_W 160 -EPLASVLRAKPDFKELTVSNNDI 182 (461)
T ss_dssp -HHHHHHHHHCTTCCEEECCSSBC
T ss_pred -HHHHHHHhhCCCCCEEECcCCCc
Confidence 00113345566777777766543
|
| >1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 | Back alignment and structure |
|---|
Probab=99.81 E-value=5e-20 Score=193.66 Aligned_cols=152 Identities=16% Similarity=0.254 Sum_probs=124.4
Q ss_pred CcceeEeeccCcccc--CCCchhhcCCCCCcEEEcCC-CCCC-CCChhhcCCCCCCEEEccCCccCC--cccccCCCCCC
Q 003193 232 LKLKLFLFFTENLSL--QIPDPFFEGMTELRVLDLTG-FRFH-SLPSSLGCLINLRTLSLENCLVVD--VAIIGDLKKLE 305 (840)
Q Consensus 232 ~~L~~L~l~~~~~~~--~~~~~~~~~l~~Lr~L~l~~-~~~~-~lp~~l~~l~~L~~L~L~~~~~~~--~~~i~~L~~L~ 305 (840)
.+++.|+++++.+.+ .+|..+ .++++|++|++++ |.+. .+|..++++++|++|++++|.+.. |..++++++|+
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l-~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~ 128 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSL-ANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLV 128 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGG-GGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCC
T ss_pred ceEEEEECCCCCccCCcccChhH-hCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCC
Confidence 578999999999887 777765 8899999999995 7776 689999999999999999999874 78899999999
Q ss_pred EEeecCCCCc-ccChhhcCCCCCCEEEccCCCCCC-ccCcccccCCC-CCcEEEccCCcccceecCCCCCCcccccCCCC
Q 003193 306 ILSLKHSSIE-QLPREIGQLTCLKLLDLSNCSKLK-EIRPNVISNLT-RLEELYMGNSFTQWKVEGQSNASLGELKQLSR 382 (840)
Q Consensus 306 ~L~l~~~~l~-~lp~~i~~L~~L~~L~L~~~~~l~-~~p~~~l~~L~-~L~~L~l~~~~~~~~~~~~~~~~l~~l~~l~~ 382 (840)
+|++++|.++ .+|..++++++|++|++++| .+. .+|.. +++++ +|++|++++|.+....+ ..+..++
T Consensus 129 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N-~l~~~~p~~-l~~l~~~L~~L~L~~N~l~~~~~-------~~~~~l~- 198 (313)
T 1ogq_A 129 TLDFSYNALSGTLPPSISSLPNLVGITFDGN-RISGAIPDS-YGSFSKLFTSMTISRNRLTGKIP-------PTFANLN- 198 (313)
T ss_dssp EEECCSSEEESCCCGGGGGCTTCCEEECCSS-CCEEECCGG-GGCCCTTCCEEECCSSEEEEECC-------GGGGGCC-
T ss_pred EEeCCCCccCCcCChHHhcCCCCCeEECcCC-cccCcCCHH-HhhhhhcCcEEECcCCeeeccCC-------hHHhCCc-
Confidence 9999999888 78889999999999999994 555 67766 78887 99999999987654333 4455555
Q ss_pred CCeEEEecCCCC
Q 003193 383 LTTLEVHIPDAQ 394 (840)
Q Consensus 383 L~~L~l~~~~~~ 394 (840)
|+.|++++|.+.
T Consensus 199 L~~L~Ls~N~l~ 210 (313)
T 1ogq_A 199 LAFVDLSRNMLE 210 (313)
T ss_dssp CSEEECCSSEEE
T ss_pred ccEEECcCCccc
Confidence 888888766543
|
| >2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* | Back alignment and structure |
|---|
Probab=99.81 E-value=1.3e-21 Score=226.65 Aligned_cols=130 Identities=19% Similarity=0.216 Sum_probs=84.4
Q ss_pred hcCCCCCcEEEcCCCCCCC-CChhhc-CCCCCCEEEccCC-ccCC--c-ccccCCCCCCEEeecCCCCcc-----cChhh
Q 003193 253 FEGMTELRVLDLTGFRFHS-LPSSLG-CLINLRTLSLENC-LVVD--V-AIIGDLKKLEILSLKHSSIEQ-----LPREI 321 (840)
Q Consensus 253 ~~~l~~Lr~L~l~~~~~~~-lp~~l~-~l~~L~~L~L~~~-~~~~--~-~~i~~L~~L~~L~l~~~~l~~-----lp~~i 321 (840)
...+++|++|++++|.++. .+..+. .+++|++|++++| .+.. . ..+.++++|++|++++|.++. ++...
T Consensus 101 ~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~ 180 (594)
T 2p1m_B 101 SSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFP 180 (594)
T ss_dssp HHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSC
T ss_pred HHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHh
Confidence 4567889999999888763 344454 6889999999888 4444 3 334478889999998887653 33333
Q ss_pred cCCCCCCEEEccCCCCCCccCccc----ccCCCCCcEEEccCCcccceecCCCCCCcccccCCCCCCeEEEecC
Q 003193 322 GQLTCLKLLDLSNCSKLKEIRPNV----ISNLTRLEELYMGNSFTQWKVEGQSNASLGELKQLSRLTTLEVHIP 391 (840)
Q Consensus 322 ~~L~~L~~L~L~~~~~l~~~p~~~----l~~L~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~l~~L~~L~l~~~ 391 (840)
..+++|++|++++|. ..++... +.++++|++|++++|..... ....+..+++|+.|++..+
T Consensus 181 ~~~~~L~~L~l~~~~--~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~-------l~~~~~~~~~L~~L~l~~~ 245 (594)
T 2p1m_B 181 DTYTSLVSLNISCLA--SEVSFSALERLVTRCPNLKSLKLNRAVPLEK-------LATLLQRAPQLEELGTGGY 245 (594)
T ss_dssp TTCCCCCEEECTTCC--SCCCHHHHHHHHHHCTTCCEEECCTTSCHHH-------HHHHHHHCTTCSEEECSBC
T ss_pred hcCCcCcEEEecccC--CcCCHHHHHHHHHhCCCCcEEecCCCCcHHH-------HHHHHhcCCcceEcccccc
Confidence 467788888888864 2232221 24468888888887732111 1134456677887776543
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=9e-19 Score=181.88 Aligned_cols=175 Identities=19% Similarity=0.292 Sum_probs=146.0
Q ss_pred CcEEEeccCCcccCCcccCCCcceeEeeccCccccCCCchhhcCCCCCcEEEcCCCCCCCC-ChhhcCCCCCCEEEccCC
Q 003193 212 PTAISIPFRGIYELPERLGFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSL-PSSLGCLINLRTLSLENC 290 (840)
Q Consensus 212 l~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~l-p~~l~~l~~L~~L~L~~~ 290 (840)
.+.++.+++.+..+|... .++++.|++++|.+.. ++...|..+++|++|++++|.++.+ |..+.++++|++|++++|
T Consensus 13 ~~~~~c~~~~l~~ip~~~-~~~l~~L~l~~n~i~~-~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 90 (285)
T 1ozn_A 13 KVTTSCPQQGLQAVPVGI-PAASQRIFLHGNRISH-VPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN 90 (285)
T ss_dssp SCEEECCSSCCSSCCTTC-CTTCSEEECTTSCCCE-ECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSC
T ss_pred CeEEEcCcCCcccCCcCC-CCCceEEEeeCCcCCc-cCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCC
Confidence 367888888888888654 5789999999998874 5555568999999999999999876 778999999999999999
Q ss_pred c-cCC--cccccCCCCCCEEeecCCCCccc-ChhhcCCCCCCEEEccCCCCCCccCcccccCCCCCcEEEccCCccccee
Q 003193 291 L-VVD--VAIIGDLKKLEILSLKHSSIEQL-PREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGNSFTQWKV 366 (840)
Q Consensus 291 ~-~~~--~~~i~~L~~L~~L~l~~~~l~~l-p~~i~~L~~L~~L~L~~~~~l~~~p~~~l~~L~~L~~L~l~~~~~~~~~ 366 (840)
. +.. +..++++++|++|++++|.++.+ |..+.++++|++|++++ +.+..++...++++++|++|++++|.+....
T Consensus 91 ~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 169 (285)
T 1ozn_A 91 AQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQD-NALQALPDDTFRDLGNLTHLFLHGNRISSVP 169 (285)
T ss_dssp TTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEECCSSCCCEEC
T ss_pred CCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCC-CcccccCHhHhccCCCccEEECCCCcccccC
Confidence 7 776 67899999999999999999977 56688999999999999 6788888777899999999999999765322
Q ss_pred cCCCCCCcccccCCCCCCeEEEecCCCCCC
Q 003193 367 EGQSNASLGELKQLSRLTTLEVHIPDAQVM 396 (840)
Q Consensus 367 ~~~~~~~l~~l~~l~~L~~L~l~~~~~~~~ 396 (840)
. ..+..+++|+.|++++|.+...
T Consensus 170 ~-------~~~~~l~~L~~L~l~~n~l~~~ 192 (285)
T 1ozn_A 170 E-------RAFRGLHSLDRLLLHQNRVAHV 192 (285)
T ss_dssp T-------TTTTTCTTCCEEECCSSCCCEE
T ss_pred H-------HHhcCccccCEEECCCCccccc
Confidence 1 3467788999999998876644
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.79 E-value=1.4e-18 Score=192.37 Aligned_cols=234 Identities=20% Similarity=0.276 Sum_probs=186.6
Q ss_pred ecCccchhhhhhccCCCcEEEeccCCcccCCcc-c-CCCcceeEeeccCccccCCCchhhcCCCCCcEEEcCCCCCCCCC
Q 003193 196 QNVADLKEELDKIDEAPTAISIPFRGIYELPER-L-GFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLP 273 (840)
Q Consensus 196 ~~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~~~-~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp 273 (840)
..+..+..+|.....+++.|++++|.+..++.. + .+++|++|++++|.+. .++...|.++++|++|++++|.++.+|
T Consensus 50 c~~~~l~~iP~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~-~i~~~~~~~l~~L~~L~L~~n~l~~~~ 128 (440)
T 3zyj_A 50 CVRKNLREVPDGISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIR-TIEIGAFNGLANLNTLELFDNRLTTIP 128 (440)
T ss_dssp CCSCCCSSCCSCCCTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCC-EECGGGGTTCSSCCEEECCSSCCSSCC
T ss_pred eCCCCcCcCCCCCCCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCC-ccChhhccCCccCCEEECCCCcCCeeC
Confidence 345567777877889999999999999877643 3 7999999999999876 455566799999999999999999987
Q ss_pred h-hhcCCCCCCEEEccCCccCC--cccccCCCCCCEEeecCC-CCcccCh-hhcCCCCCCEEEccCCCCCCccCcccccC
Q 003193 274 S-SLGCLINLRTLSLENCLVVD--VAIIGDLKKLEILSLKHS-SIEQLPR-EIGQLTCLKLLDLSNCSKLKEIRPNVISN 348 (840)
Q Consensus 274 ~-~l~~l~~L~~L~L~~~~~~~--~~~i~~L~~L~~L~l~~~-~l~~lp~-~i~~L~~L~~L~L~~~~~l~~~p~~~l~~ 348 (840)
. .+..+++|++|++++|.+.. +..+.++++|++|++++| .+..+|. .+.++++|++|++++ +.+..+|. +..
T Consensus 129 ~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~-n~l~~~~~--~~~ 205 (440)
T 3zyj_A 129 NGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAM-CNLREIPN--LTP 205 (440)
T ss_dssp TTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTT-SCCSSCCC--CTT
T ss_pred HhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCC-CcCccccc--cCC
Confidence 6 68999999999999999988 457999999999999995 7777775 589999999999999 68888885 899
Q ss_pred CCCCcEEEccCCcccceecCCCCCCcccccCCCCCCeEEEecCCCCCCCCcccccCcceEEEEEcCccCCCCCccccceE
Q 003193 349 LTRLEELYMGNSFTQWKVEGQSNASLGELKQLSRLTTLEVHIPDAQVMPQDLVFVELERFRICIGDVWSWSDGYETSKTL 428 (840)
Q Consensus 349 L~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~L 428 (840)
+++|++|++++|.+....+ ..+.++++|+.|++++|.+..++... +..
T Consensus 206 l~~L~~L~Ls~N~l~~~~~-------~~~~~l~~L~~L~L~~n~l~~~~~~~------------------~~~------- 253 (440)
T 3zyj_A 206 LIKLDELDLSGNHLSAIRP-------GSFQGLMHLQKLWMIQSQIQVIERNA------------------FDN------- 253 (440)
T ss_dssp CSSCCEEECTTSCCCEECT-------TTTTTCTTCCEEECTTCCCCEECTTS------------------STT-------
T ss_pred CcccCEEECCCCccCccCh-------hhhccCccCCEEECCCCceeEEChhh------------------hcC-------
Confidence 9999999999998764333 56778899999999988776543321 111
Q ss_pred EEeeCCCccchhhHHHHHhcccceeeccccccccccccccchhhcccccEEEeecCC
Q 003193 429 KLQLNNSTYLGYGMKMLLKRTEDLHLDELAGFKNVVHELDDEEGFARLRHLHVHNGP 485 (840)
Q Consensus 429 ~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~~~~l~~L~~L~l~~~~ 485 (840)
+++|+.|+|++|......+..+ ..+++|+.|++++|+
T Consensus 254 -----------------l~~L~~L~L~~N~l~~~~~~~~---~~l~~L~~L~L~~Np 290 (440)
T 3zyj_A 254 -----------------LQSLVEINLAHNNLTLLPHDLF---TPLHHLERIHLHHNP 290 (440)
T ss_dssp -----------------CTTCCEEECTTSCCCCCCTTTT---SSCTTCCEEECCSSC
T ss_pred -----------------CCCCCEEECCCCCCCccChhHh---ccccCCCEEEcCCCC
Confidence 3566667777665443333333 567888888888886
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.78 E-value=6.8e-18 Score=192.12 Aligned_cols=256 Identities=20% Similarity=0.149 Sum_probs=185.8
Q ss_pred CCCcEEEeccCCcccCCcccCCCcceeEeeccCccccCCCchhhcCCCCCcEEEcCCCCCCCCChhhcCCCCCCEEEccC
Q 003193 210 EAPTAISIPFRGIYELPERLGFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPSSLGCLINLRTLSLEN 289 (840)
Q Consensus 210 ~~l~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~l~~l~~L~~L~L~~ 289 (840)
.+++.++++++.+..+|..+. ++|++|++++|.+. .+|. .+++|++|++++|.++.+|. .+++|++|++++
T Consensus 40 ~~l~~L~ls~n~L~~lp~~l~-~~L~~L~L~~N~l~-~lp~----~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~ 110 (622)
T 3g06_A 40 NGNAVLNVGESGLTTLPDCLP-AHITTLVIPDNNLT-SLPA----LPPELRTLEVSGNQLTSLPV---LPPGLLELSIFS 110 (622)
T ss_dssp HCCCEEECCSSCCSCCCSCCC-TTCSEEEECSCCCS-CCCC----CCTTCCEEEECSCCCSCCCC---CCTTCCEEEECS
T ss_pred CCCcEEEecCCCcCccChhhC-CCCcEEEecCCCCC-CCCC----cCCCCCEEEcCCCcCCcCCC---CCCCCCEEECcC
Confidence 357888999999888887665 78999999988876 5664 57889999999999988887 678899999999
Q ss_pred CccCCcccccCCCCCCEEeecCCCCcccChhhcCCCCCCEEEccCCCCCCccCcccccCCCCCcEEEccCCcccceecCC
Q 003193 290 CLVVDVAIIGDLKKLEILSLKHSSIEQLPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGNSFTQWKVEGQ 369 (840)
Q Consensus 290 ~~~~~~~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~L~~~~~l~~~p~~~l~~L~~L~~L~l~~~~~~~~~~~~ 369 (840)
|.++..+. .+.+|++|++++|+++.+|.. +++|++|++++ +.+..+|. .+.+|+.|++++|.+..
T Consensus 111 N~l~~l~~--~l~~L~~L~L~~N~l~~lp~~---l~~L~~L~Ls~-N~l~~l~~----~~~~L~~L~L~~N~l~~----- 175 (622)
T 3g06_A 111 NPLTHLPA--LPSGLCKLWIFGNQLTSLPVL---PPGLQELSVSD-NQLASLPA----LPSELCKLWAYNNQLTS----- 175 (622)
T ss_dssp CCCCCCCC--CCTTCCEEECCSSCCSCCCCC---CTTCCEEECCS-SCCSCCCC----CCTTCCEEECCSSCCSC-----
T ss_pred CcCCCCCC--CCCCcCEEECCCCCCCcCCCC---CCCCCEEECcC-CcCCCcCC----ccCCCCEEECCCCCCCC-----
Confidence 98888322 678899999999999888864 48899999998 57777764 24678889998886642
Q ss_pred CCCCcccccCCCCCCeEEEecCCCCCCCCcccccCcceEEEEEcCccCCCCCccccceEEEeeCCCccchhhHHHHHhcc
Q 003193 370 SNASLGELKQLSRLTTLEVHIPDAQVMPQDLVFVELERFRICIGDVWSWSDGYETSKTLKLQLNNSTYLGYGMKMLLKRT 449 (840)
Q Consensus 370 ~~~~l~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~l~~L 449 (840)
+. ..+++|+.|++++|.+..++.. ..+|+.| .+.++....+|.. +++|
T Consensus 176 ----l~--~~~~~L~~L~Ls~N~l~~l~~~--~~~L~~L--------------------~L~~N~l~~l~~~----~~~L 223 (622)
T 3g06_A 176 ----LP--MLPSGLQELSVSDNQLASLPTL--PSELYKL--------------------WAYNNRLTSLPAL----PSGL 223 (622)
T ss_dssp ----CC--CCCTTCCEEECCSSCCSCCCCC--CTTCCEE--------------------ECCSSCCSSCCCC----CTTC
T ss_pred ----Cc--ccCCCCcEEECCCCCCCCCCCc--cchhhEE--------------------ECcCCcccccCCC----CCCC
Confidence 11 3457888899988887766542 2344444 4444444444432 3678
Q ss_pred cceeeccccccccccccccchhhcccccEEEeecCCCeEEEEeCCCccccccccceeecccccccccccccccccCCCCc
Q 003193 450 EDLHLDELAGFKNVVHELDDEEGFARLRHLHVHNGPEILHILNSDGRVGTFPLLESLFLHNLINLEKVCDGKVRLNEDDK 529 (840)
Q Consensus 450 ~~L~L~~~~~~~~~~~~l~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~ 529 (840)
+.|++++|.. +.++ ..+++|+.|++++|. +..++ ..+++|+.|+++++ +++.++.. ..
T Consensus 224 ~~L~Ls~N~L-~~lp------~~l~~L~~L~Ls~N~-L~~lp------~~~~~L~~L~Ls~N-~L~~lp~~-------l~ 281 (622)
T 3g06_A 224 KELIVSGNRL-TSLP------VLPSELKELMVSGNR-LTSLP------MLPSGLLSLSVYRN-QLTRLPES-------LI 281 (622)
T ss_dssp CEEECCSSCC-SCCC------CCCTTCCEEECCSSC-CSCCC------CCCTTCCEEECCSS-CCCSCCGG-------GG
T ss_pred CEEEccCCcc-CcCC------CCCCcCcEEECCCCC-CCcCC------cccccCcEEeCCCC-CCCcCCHH-------Hh
Confidence 8888887743 3333 346788899988885 33322 15778999999885 56655422 45
Q ss_pred ccCCccEEEEecCC
Q 003193 530 SFSNLRIIKVEGCH 543 (840)
Q Consensus 530 ~~~~L~~L~l~~c~ 543 (840)
.+++|+.|++++++
T Consensus 282 ~l~~L~~L~L~~N~ 295 (622)
T 3g06_A 282 HLSSETTVNLEGNP 295 (622)
T ss_dssp GSCTTCEEECCSCC
T ss_pred hccccCEEEecCCC
Confidence 78999999999876
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A | Back alignment and structure |
|---|
Probab=99.78 E-value=2e-18 Score=191.81 Aligned_cols=233 Identities=22% Similarity=0.253 Sum_probs=183.7
Q ss_pred cCccchhhhhhccCCCcEEEeccCCcccCCcc-c-CCCcceeEeeccCccccCCCchhhcCCCCCcEEEcCCCCCCCCCh
Q 003193 197 NVADLKEELDKIDEAPTAISIPFRGIYELPER-L-GFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPS 274 (840)
Q Consensus 197 ~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~~~-~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~ 274 (840)
.+..+..+|...+.+++.|++++|.+..++.. + .+++|+.|++++|.+.. ++...|.++++|++|++++|.++.+|.
T Consensus 62 ~~~~l~~iP~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~ 140 (452)
T 3zyi_A 62 TRRGLSEVPQGIPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQ-IEVGAFNGLASLNTLELFDNWLTVIPS 140 (452)
T ss_dssp CSSCCSSCCSCCCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCE-ECTTTTTTCTTCCEEECCSSCCSBCCT
T ss_pred CCCCcCccCCCCCCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCC-cChhhccCcccCCEEECCCCcCCccCh
Confidence 44566777777788999999999999877543 3 79999999999998874 444556899999999999999998875
Q ss_pred h-hcCCCCCCEEEccCCccCC--cccccCCCCCCEEeecCC-CCcccCh-hhcCCCCCCEEEccCCCCCCccCcccccCC
Q 003193 275 S-LGCLINLRTLSLENCLVVD--VAIIGDLKKLEILSLKHS-SIEQLPR-EIGQLTCLKLLDLSNCSKLKEIRPNVISNL 349 (840)
Q Consensus 275 ~-l~~l~~L~~L~L~~~~~~~--~~~i~~L~~L~~L~l~~~-~l~~lp~-~i~~L~~L~~L~L~~~~~l~~~p~~~l~~L 349 (840)
. +..+++|++|++++|.+.. +..+.++++|++|++++| .+..+|. .+..+++|++|++++ +.+..+|. +..+
T Consensus 141 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~-n~l~~~~~--~~~l 217 (452)
T 3zyi_A 141 GAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGM-CNIKDMPN--LTPL 217 (452)
T ss_dssp TTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTT-SCCSSCCC--CTTC
T ss_pred hhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCC-Cccccccc--cccc
Confidence 4 8899999999999999988 457999999999999995 7888876 588999999999999 67888875 8999
Q ss_pred CCCcEEEccCCcccceecCCCCCCcccccCCCCCCeEEEecCCCCCCCCcccccCcceEEEEEcCccCCCCCccccceEE
Q 003193 350 TRLEELYMGNSFTQWKVEGQSNASLGELKQLSRLTTLEVHIPDAQVMPQDLVFVELERFRICIGDVWSWSDGYETSKTLK 429 (840)
Q Consensus 350 ~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~ 429 (840)
++|++|++++|.+....+ ..+.++++|+.|++++|.+..++... +..
T Consensus 218 ~~L~~L~Ls~N~l~~~~~-------~~~~~l~~L~~L~L~~n~l~~~~~~~------------------~~~-------- 264 (452)
T 3zyi_A 218 VGLEELEMSGNHFPEIRP-------GSFHGLSSLKKLWVMNSQVSLIERNA------------------FDG-------- 264 (452)
T ss_dssp TTCCEEECTTSCCSEECG-------GGGTTCTTCCEEECTTSCCCEECTTT------------------TTT--------
T ss_pred ccccEEECcCCcCcccCc-------ccccCccCCCEEEeCCCcCceECHHH------------------hcC--------
Confidence 999999999998764333 66888999999999988776543221 111
Q ss_pred EeeCCCccchhhHHHHHhcccceeeccccccccccccccchhhcccccEEEeecCC
Q 003193 430 LQLNNSTYLGYGMKMLLKRTEDLHLDELAGFKNVVHELDDEEGFARLRHLHVHNGP 485 (840)
Q Consensus 430 l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~~~~l~~L~~L~l~~~~ 485 (840)
+++|+.|+|++|......+..+ ..+++|+.|++++|+
T Consensus 265 ----------------l~~L~~L~L~~N~l~~~~~~~~---~~l~~L~~L~L~~Np 301 (452)
T 3zyi_A 265 ----------------LASLVELNLAHNNLSSLPHDLF---TPLRYLVELHLHHNP 301 (452)
T ss_dssp ----------------CTTCCEEECCSSCCSCCCTTSS---TTCTTCCEEECCSSC
T ss_pred ----------------CCCCCEEECCCCcCCccChHHh---ccccCCCEEEccCCC
Confidence 3456666666664432222233 567788888888776
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.78 E-value=2.8e-18 Score=180.18 Aligned_cols=229 Identities=17% Similarity=0.198 Sum_probs=179.8
Q ss_pred cCccchhhhhhccCCCcEEEeccCCcccCCccc--CCCcceeEeeccCccccC--CCchhhcCCCCCcEEEcCCCCCCCC
Q 003193 197 NVADLKEELDKIDEAPTAISIPFRGIYELPERL--GFLKLKLFLFFTENLSLQ--IPDPFFEGMTELRVLDLTGFRFHSL 272 (840)
Q Consensus 197 ~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~~~~--~~~~L~~L~l~~~~~~~~--~~~~~~~~l~~Lr~L~l~~~~~~~l 272 (840)
.+..+..+|...+.++++|++++|.+..+|... .+++|++|++++|.+... .+..+ ..+++|++|++++|.+..+
T Consensus 15 ~~~~l~~ip~~~~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~-~~~~~L~~L~Ls~n~i~~l 93 (306)
T 2z66_A 15 NSKGLTSVPTGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSD-FGTTSLKYLDLSFNGVITM 93 (306)
T ss_dssp CSSCCSSCCSCCCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHH-HSCSCCCEEECCSCSEEEE
T ss_pred CCCCcccCCCCCCCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCccccc-ccccccCEEECCCCccccC
Confidence 344566667767789999999999999888753 899999999999987522 24444 5799999999999999999
Q ss_pred ChhhcCCCCCCEEEccCCccCC-c--ccccCCCCCCEEeecCCCCccc-ChhhcCCCCCCEEEccCCCCCCc--cCcccc
Q 003193 273 PSSLGCLINLRTLSLENCLVVD-V--AIIGDLKKLEILSLKHSSIEQL-PREIGQLTCLKLLDLSNCSKLKE--IRPNVI 346 (840)
Q Consensus 273 p~~l~~l~~L~~L~L~~~~~~~-~--~~i~~L~~L~~L~l~~~~l~~l-p~~i~~L~~L~~L~L~~~~~l~~--~p~~~l 346 (840)
|..+..+++|++|++++|.+.. + ..+.++++|++|++++|.++.. |..+..+++|++|++++| .+.. +|.. +
T Consensus 94 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~-~ 171 (306)
T 2z66_A 94 SSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGN-SFQENFLPDI-F 171 (306)
T ss_dssp EEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTC-EEGGGEECSC-C
T ss_pred hhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCC-ccccccchhH-H
Confidence 9999999999999999999887 3 5799999999999999998855 566889999999999995 5554 5554 8
Q ss_pred cCCCCCcEEEccCCcccceecCCCCCCcccccCCCCCCeEEEecCCCCCCCCcc--cccCcceEEEEEcCccC----CCC
Q 003193 347 SNLTRLEELYMGNSFTQWKVEGQSNASLGELKQLSRLTTLEVHIPDAQVMPQDL--VFVELERFRICIGDVWS----WSD 420 (840)
Q Consensus 347 ~~L~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~l~~L~~L~l~~~~~~~~~~~~--~~~~L~~L~l~~~~~~~----~~~ 420 (840)
+.+++|++|++++|.+....+ ..+..+++|+.|++++|.+..++... .+++|+.|++..+.... .+.
T Consensus 172 ~~l~~L~~L~Ls~n~l~~~~~-------~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~ 244 (306)
T 2z66_A 172 TELRNLTFLDLSQCQLEQLSP-------TAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQ 244 (306)
T ss_dssp TTCTTCCEEECTTSCCCEECT-------TTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCC
T ss_pred hhCcCCCEEECCCCCcCCcCH-------HHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHH
Confidence 999999999999997754322 56678899999999999988776532 56778888776554322 223
Q ss_pred Cc-cccceEEEeeCCC
Q 003193 421 GY-ETSKTLKLQLNNS 435 (840)
Q Consensus 421 ~~-~~l~~L~l~~~~~ 435 (840)
.. ++++.++++++..
T Consensus 245 ~~~~~L~~L~L~~N~~ 260 (306)
T 2z66_A 245 HFPSSLAFLNLTQNDF 260 (306)
T ss_dssp CCCTTCCEEECTTCCE
T ss_pred hhhccCCEEEccCCCe
Confidence 33 3566666666543
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.77 E-value=1.7e-17 Score=188.91 Aligned_cols=245 Identities=18% Similarity=0.088 Sum_probs=178.9
Q ss_pred ccchhhhhhccCCCcEEEeccCCcccCCcccCCCcceeEeeccCccccCCCchhhcCCCCCcEEEcCCCCCCCCChhhcC
Q 003193 199 ADLKEELDKIDEAPTAISIPFRGIYELPERLGFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPSSLGC 278 (840)
Q Consensus 199 ~~~~~~~~~~~~~l~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~l~~ 278 (840)
..+..+|....++++.|++++|.+..+|. .+++|++|++++|.+. .+|. .+++|++|++++|.++.+|. .
T Consensus 50 n~L~~lp~~l~~~L~~L~L~~N~l~~lp~--~l~~L~~L~Ls~N~l~-~lp~----~l~~L~~L~Ls~N~l~~l~~---~ 119 (622)
T 3g06_A 50 SGLTTLPDCLPAHITTLVIPDNNLTSLPA--LPPELRTLEVSGNQLT-SLPV----LPPGLLELSIFSNPLTHLPA---L 119 (622)
T ss_dssp SCCSCCCSCCCTTCSEEEECSCCCSCCCC--CCTTCCEEEECSCCCS-CCCC----CCTTCCEEEECSCCCCCCCC---C
T ss_pred CCcCccChhhCCCCcEEEecCCCCCCCCC--cCCCCCEEEcCCCcCC-cCCC----CCCCCCEEECcCCcCCCCCC---C
Confidence 44555666566899999999999998887 6899999999999876 5665 68999999999999999987 6
Q ss_pred CCCCCEEEccCCccCC-cccccCCCCCCEEeecCCCCcccChhhcCCCCCCEEEccCCCCCCccCcccccCCCCCcEEEc
Q 003193 279 LINLRTLSLENCLVVD-VAIIGDLKKLEILSLKHSSIEQLPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYM 357 (840)
Q Consensus 279 l~~L~~L~L~~~~~~~-~~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~L~~~~~l~~~p~~~l~~L~~L~~L~l 357 (840)
+.+|++|++++|.++. |.. +++|++|++++|+++.+|. .+.+|+.|++++ +.+..+| ..+++|+.|++
T Consensus 120 l~~L~~L~L~~N~l~~lp~~---l~~L~~L~Ls~N~l~~l~~---~~~~L~~L~L~~-N~l~~l~----~~~~~L~~L~L 188 (622)
T 3g06_A 120 PSGLCKLWIFGNQLTSLPVL---PPGLQELSVSDNQLASLPA---LPSELCKLWAYN-NQLTSLP----MLPSGLQELSV 188 (622)
T ss_dssp CTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCSCCCC---CCTTCCEEECCS-SCCSCCC----CCCTTCCEEEC
T ss_pred CCCcCEEECCCCCCCcCCCC---CCCCCEEECcCCcCCCcCC---ccCCCCEEECCC-CCCCCCc----ccCCCCcEEEC
Confidence 7899999999999988 543 4899999999999999986 457899999999 6788887 34789999999
Q ss_pred cCCcccceecCCCCCCcccccCCCCCCeEEEecCCCCCCCCcccccCcceEEEEEcCccCCCCCccccceEEEeeCCCcc
Q 003193 358 GNSFTQWKVEGQSNASLGELKQLSRLTTLEVHIPDAQVMPQDLVFVELERFRICIGDVWSWSDGYETSKTLKLQLNNSTY 437 (840)
Q Consensus 358 ~~~~~~~~~~~~~~~~l~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~l~~~~~~~ 437 (840)
++|.+.. ++ ..+++|+.|++++|.+..++.. +++|+.|++..+.+......+++|+.|+++++....
T Consensus 189 s~N~l~~-l~----------~~~~~L~~L~L~~N~l~~l~~~--~~~L~~L~Ls~N~L~~lp~~l~~L~~L~Ls~N~L~~ 255 (622)
T 3g06_A 189 SDNQLAS-LP----------TLPSELYKLWAYNNRLTSLPAL--PSGLKELIVSGNRLTSLPVLPSELKELMVSGNRLTS 255 (622)
T ss_dssp CSSCCSC-CC----------CCCTTCCEEECCSSCCSSCCCC--CTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSC
T ss_pred CCCCCCC-CC----------CccchhhEEECcCCcccccCCC--CCCCCEEEccCCccCcCCCCCCcCcEEECCCCCCCc
Confidence 9997652 11 1247899999999988877753 366777776655443333344555555555555444
Q ss_pred chhhHHHHHhcccceeeccccccccccccccchhhcccccEEEeecCC
Q 003193 438 LGYGMKMLLKRTEDLHLDELAGFKNVVHELDDEEGFARLRHLHVHNGP 485 (840)
Q Consensus 438 ~~~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~~~~l~~L~~L~l~~~~ 485 (840)
+|. .+++|+.|++++|... .+|..+ ..+++|+.|++++|+
T Consensus 256 lp~----~~~~L~~L~Ls~N~L~-~lp~~l---~~l~~L~~L~L~~N~ 295 (622)
T 3g06_A 256 LPM----LPSGLLSLSVYRNQLT-RLPESL---IHLSSETTVNLEGNP 295 (622)
T ss_dssp CCC----CCTTCCEEECCSSCCC-SCCGGG---GGSCTTCEEECCSCC
T ss_pred CCc----ccccCcEEeCCCCCCC-cCCHHH---hhccccCEEEecCCC
Confidence 443 2345555555555332 344433 445555555555554
|
| >3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* | Back alignment and structure |
|---|
Probab=99.76 E-value=1.2e-18 Score=219.96 Aligned_cols=172 Identities=17% Similarity=0.240 Sum_probs=142.9
Q ss_pred CCCCceEEccC-CCHHHHHHHHHHHhCCCCCCCchhhHHHHHHHHhCCCchhHHHHHHHhcCCCHHHHHHHHHHhhcCCC
Q 003193 4 YEYSEDFLDWL-LSNEEASHLFEKIVGHSAKKSDFETIGVEIVAKCGGLPIAIKTIANALKNKSPRIWKDAVNQLSNSNP 82 (840)
Q Consensus 4 ~~~~~~~~l~~-L~~~~s~~Lf~~~a~~~~~~~~~~~i~~~i~~~c~GlPLai~~~g~~L~~~~~~~W~~~l~~l~~~~~ 82 (840)
++....|+++. |+++|||+||.+.|+. ..+++.+++++|+++|+|+||||+++|+.|+.+. .+|+..++.+.....
T Consensus 274 ~~~~~~~~~~~~l~~~~a~~l~~~~~~~--~~~~~~~~~~~i~~~~~glPLal~~~~~~l~~~~-~~~~~~l~~l~~~~~ 350 (1249)
T 3sfz_A 274 MGPKHVVPVESGLGREKGLEILSLFVNM--KKEDLPAEAHSIIKECKGSPLVVSLIGALLRDFP-NRWAYYLRQLQNKQF 350 (1249)
T ss_dssp CSCBCCEECCSSCCHHHHHHHHHHHHTS--CSTTCCTHHHHHHHHTTTCHHHHHHHHHHHHHSS-SCHHHHHHHHHSCCC
T ss_pred cCCceEEEecCCCCHHHHHHHHHHhhCC--ChhhCcHHHHHHHHHhCCCHHHHHHHHHHhhcCh-hHHHHHHHHHhhhhh
Confidence 56778999996 9999999999999963 2355678899999999999999999999999765 479999999977664
Q ss_pred CCccccc----cc-ccceeecccccCchhhhhHHHhccCCCCCCccCHHHHHHHHhhcccccccchHHHHHHHHHHHHHH
Q 003193 83 RKIQGMD----AD-LSSIELSYEFLKCKEVKSLFQLCGLLKDGSRIAVDDLLRYVMGLRLLTNADTLEAARNRVHTLIDN 157 (840)
Q Consensus 83 ~~~~~~~----~~-~~~l~lSY~~L~~~~lk~cfl~~~~fp~~~~i~~~~li~~wia~gfi~~~~~~~~~~~~~~~~~~~ 157 (840)
..+.... +. ..++.+||+.||++ .|+||+|||+||+++.|+++.++.+|.+++ +.+.+++++
T Consensus 351 ~~~~~~~~~~~~~~~~~l~~s~~~L~~~-~~~~~~~l~~f~~~~~i~~~~~~~~~~~~~------------~~~~~~l~~ 417 (1249)
T 3sfz_A 351 KRIRKSSSYDYEALDEAMSISVEMLRED-IKDYYTDLSILQKDVKVPTKVLCVLWDLET------------EEVEDILQE 417 (1249)
T ss_dssp CCSSCTTCTTHHHHHHHHHHHHHTSCTT-THHHHHHGGGSCTTCCEEHHHHHHHHTCCH------------HHHHHHHHH
T ss_pred hhcccccccchHHHHHHHHHHHHhCCHH-HHHHHHHhCccCCCCeeCHHHHHHHhCCCH------------HHHHHHHHH
Confidence 3333221 12 78999999999998 999999999999999999999999997763 234568999
Q ss_pred HhhccccccCCC--CCceEeehhHHHHHHHHHhhce
Q 003193 158 LKSASLLFDGDS--EDHAKMHRIIHAIAVSIAAEKL 191 (840)
Q Consensus 158 L~~~~l~~~~~~--~~~~~mhdli~~l~~~i~~~e~ 191 (840)
|+++||++.... ...|+|||++|++|+..+.++.
T Consensus 418 L~~~sl~~~~~~~~~~~~~~h~l~~~~~~~~~~~~~ 453 (1249)
T 3sfz_A 418 FVNKSLLFCNRNGKSFCYYLHDLQVDFLTEKNRSQL 453 (1249)
T ss_dssp HHHTTSCEEEESSSSEEEECCHHHHHHHHHHTGGGH
T ss_pred HHhccceEEecCCCceEEEecHHHHHHHHhhhhHHH
Confidence 999999986532 2359999999999999877653
|
| >2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.75 E-value=4.1e-17 Score=167.62 Aligned_cols=191 Identities=24% Similarity=0.387 Sum_probs=144.3
Q ss_pred CCCcEEEeccCCcccCCcccCCCcceeEeeccCccccCCCchhhcCCCCCcEEEcCCCCCCCCChh-hcCCCCCCEEEcc
Q 003193 210 EAPTAISIPFRGIYELPERLGFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPSS-LGCLINLRTLSLE 288 (840)
Q Consensus 210 ~~l~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~-l~~l~~L~~L~L~ 288 (840)
...+.++++++.+..+|..+. ++++.|++++|.+. .++...|.++++|++|++++|.++.+|.. +.++++|++|+++
T Consensus 16 ~~~~~l~~~~~~l~~ip~~~~-~~l~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~ 93 (270)
T 2o6q_A 16 NNKNSVDCSSKKLTAIPSNIP-ADTKKLDLQSNKLS-SLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVT 93 (270)
T ss_dssp TTTTEEECTTSCCSSCCSCCC-TTCSEEECCSSCCS-CCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECC
T ss_pred CCCCEEEccCCCCCccCCCCC-CCCCEEECcCCCCC-eeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECC
Confidence 356788888888888876553 67888888888876 45555568888899999988888888765 4778889999998
Q ss_pred CCccCC--cccccCCCCCCEEeecCCCCcccChh-hcCCCCCCEEEccCCCCCCccCcccccCCCCCcEEEccCCcccce
Q 003193 289 NCLVVD--VAIIGDLKKLEILSLKHSSIEQLPRE-IGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGNSFTQWK 365 (840)
Q Consensus 289 ~~~~~~--~~~i~~L~~L~~L~l~~~~l~~lp~~-i~~L~~L~~L~L~~~~~l~~~p~~~l~~L~~L~~L~l~~~~~~~~ 365 (840)
+|.+.. +..++++++|++|++++|.++.+|.. ++.+++|++|++++ +.+..+|...++.+++|++|++++|.+...
T Consensus 94 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~-n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 172 (270)
T 2o6q_A 94 DNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGY-NELQSLPKGVFDKLTSLKELRLYNNQLKRV 172 (270)
T ss_dssp SSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEECCSSCCSCC
T ss_pred CCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCC-CcCCccCHhHccCCcccceeEecCCcCcEe
Confidence 888887 35678888899999988888877654 68888899999888 577888877678888899998888866432
Q ss_pred ecCCCCCCcccccCCCCCCeEEEecCCCCCCCCcc--cccCcceEEE
Q 003193 366 VEGQSNASLGELKQLSRLTTLEVHIPDAQVMPQDL--VFVELERFRI 410 (840)
Q Consensus 366 ~~~~~~~~l~~l~~l~~L~~L~l~~~~~~~~~~~~--~~~~L~~L~l 410 (840)
.+ ..+.++++|+.|++++|.+..++... .+++|+.|++
T Consensus 173 ~~-------~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l 212 (270)
T 2o6q_A 173 PE-------GAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQL 212 (270)
T ss_dssp CT-------TTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEEC
T ss_pred Ch-------hHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEe
Confidence 11 34667788888888888877666542 3444444444
|
| >2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.75 E-value=4e-17 Score=167.73 Aligned_cols=188 Identities=25% Similarity=0.393 Sum_probs=161.1
Q ss_pred CccchhhhhhccCCCcEEEeccCCcccCCcc-c-CCCcceeEeeccCccccCCCchhhcCCCCCcEEEcCCCCCCCCCh-
Q 003193 198 VADLKEELDKIDEAPTAISIPFRGIYELPER-L-GFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPS- 274 (840)
Q Consensus 198 ~~~~~~~~~~~~~~l~~L~l~~~~~~~l~~~-~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~- 274 (840)
+..+..+|...+.++++|++++|.+..++.. + .+++|++|++++|.+. .++..+|.++++|++|++++|.++.+|.
T Consensus 25 ~~~l~~ip~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~i~~~~~~~l~~L~~L~l~~n~l~~~~~~ 103 (270)
T 2o6q_A 25 SKKLTAIPSNIPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKNLETLWVTDNKLQALPIG 103 (270)
T ss_dssp TSCCSSCCSCCCTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCS-CCCTTTTSSCTTCCEEECCSSCCCCCCTT
T ss_pred CCCCCccCCCCCCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccC-eeChhhhcCCCCCCEEECCCCcCCcCCHh
Confidence 4456666766778999999999999888763 3 7999999999999876 6777888999999999999999998865
Q ss_pred hhcCCCCCCEEEccCCccCC--cccccCCCCCCEEeecCCCCcccChh-hcCCCCCCEEEccCCCCCCccCcccccCCCC
Q 003193 275 SLGCLINLRTLSLENCLVVD--VAIIGDLKKLEILSLKHSSIEQLPRE-IGQLTCLKLLDLSNCSKLKEIRPNVISNLTR 351 (840)
Q Consensus 275 ~l~~l~~L~~L~L~~~~~~~--~~~i~~L~~L~~L~l~~~~l~~lp~~-i~~L~~L~~L~L~~~~~l~~~p~~~l~~L~~ 351 (840)
.+..+++|++|++++|.+.. +..++++++|++|++++|.++.+|.. +..+++|++|++++ +.+..+++..+.++++
T Consensus 104 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~ 182 (270)
T 2o6q_A 104 VFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYN-NQLKRVPEGAFDKLTE 182 (270)
T ss_dssp TTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS-SCCSCCCTTTTTTCTT
T ss_pred HcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecC-CcCcEeChhHhccCCC
Confidence 56899999999999999988 45689999999999999999999876 78999999999999 6788888877899999
Q ss_pred CcEEEccCCcccceecCCCCCCcccccCCCCCCeEEEecCCCC
Q 003193 352 LEELYMGNSFTQWKVEGQSNASLGELKQLSRLTTLEVHIPDAQ 394 (840)
Q Consensus 352 L~~L~l~~~~~~~~~~~~~~~~l~~l~~l~~L~~L~l~~~~~~ 394 (840)
|++|++++|.+....+ ..+..+++|+.|++++|...
T Consensus 183 L~~L~L~~N~l~~~~~-------~~~~~l~~L~~L~l~~N~~~ 218 (270)
T 2o6q_A 183 LKTLKLDNNQLKRVPE-------GAFDSLEKLKMLQLQENPWD 218 (270)
T ss_dssp CCEEECCSSCCSCCCT-------TTTTTCTTCCEEECCSSCBC
T ss_pred cCEEECCCCcCCcCCH-------HHhccccCCCEEEecCCCee
Confidence 9999999997653221 34677889999999988654
|
| >1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A | Back alignment and structure |
|---|
Probab=99.74 E-value=2.4e-17 Score=170.84 Aligned_cols=192 Identities=21% Similarity=0.214 Sum_probs=156.3
Q ss_pred ccCCCcEEEeccCCcccCCcccCCCcceeEeeccCccccCCCchhhcCCCCCcEEEcCCCCCCCCChhhcCCCCCCEEEc
Q 003193 208 IDEAPTAISIPFRGIYELPERLGFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPSSLGCLINLRTLSL 287 (840)
Q Consensus 208 ~~~~l~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~l~~l~~L~~L~L 287 (840)
...+++.++++++.+..+|..+. ++++.|++++|.+.. ++...|.++++|++|++++|.++.+|.. +.+++|++|++
T Consensus 8 ~l~~l~~l~~~~~~l~~ip~~~~-~~l~~L~L~~N~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~l~~L~~L~L 84 (290)
T 1p9a_G 8 KVASHLEVNCDKRNLTALPPDLP-KDTTILHLSENLLYT-FSLATLMPYTRLTQLNLDRAELTKLQVD-GTLPVLGTLDL 84 (290)
T ss_dssp CSTTCCEEECTTSCCSSCCSCCC-TTCCEEECTTSCCSE-EEGGGGTTCTTCCEEECTTSCCCEEECC-SCCTTCCEEEC
T ss_pred ccCCccEEECCCCCCCcCCCCCC-CCCCEEEcCCCcCCc-cCHHHhhcCCCCCEEECCCCccCcccCC-CCCCcCCEEEC
Confidence 45678899999999988887653 789999999998764 4444568899999999999999887654 78999999999
Q ss_pred cCCccCC-cccccCCCCCCEEeecCCCCcccC-hhhcCCCCCCEEEccCCCCCCccCcccccCCCCCcEEEccCCcccce
Q 003193 288 ENCLVVD-VAIIGDLKKLEILSLKHSSIEQLP-REIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGNSFTQWK 365 (840)
Q Consensus 288 ~~~~~~~-~~~i~~L~~L~~L~l~~~~l~~lp-~~i~~L~~L~~L~L~~~~~l~~~p~~~l~~L~~L~~L~l~~~~~~~~ 365 (840)
++|.+.. |..+..+++|++|++++|+++.+| ..+..+++|++|++++ +.+..+|++.+..+++|++|++++|.+...
T Consensus 85 s~N~l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l 163 (290)
T 1p9a_G 85 SHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKG-NELKTLPPGLLTPTPKLEKLSLANNNLTEL 163 (290)
T ss_dssp CSSCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTT-SCCCCCCTTTTTTCTTCCEEECTTSCCSCC
T ss_pred CCCcCCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCC-CCCCccChhhcccccCCCEEECCCCcCCcc
Confidence 9999988 778889999999999999999887 4588999999999999 678888888788999999999999877532
Q ss_pred ecCCCCCCcccccCCCCCCeEEEecCCCCCCCCcc-cccCcceEEE
Q 003193 366 VEGQSNASLGELKQLSRLTTLEVHIPDAQVMPQDL-VFVELERFRI 410 (840)
Q Consensus 366 ~~~~~~~~l~~l~~l~~L~~L~l~~~~~~~~~~~~-~~~~L~~L~l 410 (840)
.. ..+..+++|+.|++++|.+..+|..+ ...+|+.+.+
T Consensus 164 ~~-------~~~~~l~~L~~L~L~~N~l~~ip~~~~~~~~L~~l~L 202 (290)
T 1p9a_G 164 PA-------GLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFL 202 (290)
T ss_dssp CT-------TTTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEEC
T ss_pred CH-------HHhcCcCCCCEEECCCCcCCccChhhcccccCCeEEe
Confidence 21 34567889999999999888777654 3444555444
|
| >1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I | Back alignment and structure |
|---|
Probab=99.74 E-value=1.5e-19 Score=202.13 Aligned_cols=150 Identities=17% Similarity=0.212 Sum_probs=72.7
Q ss_pred CCcEEEeccCCcccCCcc--c-CCCcceeEeeccCccccC----CCchhhcCCCCCcEEEcCCCCCCCC-Chhh-cCCC-
Q 003193 211 APTAISIPFRGIYELPER--L-GFLKLKLFLFFTENLSLQ----IPDPFFEGMTELRVLDLTGFRFHSL-PSSL-GCLI- 280 (840)
Q Consensus 211 ~l~~L~l~~~~~~~l~~~--~-~~~~L~~L~l~~~~~~~~----~~~~~~~~l~~Lr~L~l~~~~~~~l-p~~l-~~l~- 280 (840)
++++|+++++.+...+.. + .+++|++|++++|.+... ++ ..+..+++|++|++++|.+... +..+ ..+.
T Consensus 4 ~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~-~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~ 82 (461)
T 1z7x_W 4 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDIS-SALRVNPALAELNLRSNELGDVGVHCVLQGLQT 82 (461)
T ss_dssp EEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHH-HHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred cceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHH-HHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhh
Confidence 355566665555332211 1 455666666666554321 11 2234556666666666655421 1122 2233
Q ss_pred ---CCCEEEccCCccCC------cccccCCCCCCEEeecCCCCccc-Chhh-----cCCCCCCEEEccCCCCCCccC---
Q 003193 281 ---NLRTLSLENCLVVD------VAIIGDLKKLEILSLKHSSIEQL-PREI-----GQLTCLKLLDLSNCSKLKEIR--- 342 (840)
Q Consensus 281 ---~L~~L~L~~~~~~~------~~~i~~L~~L~~L~l~~~~l~~l-p~~i-----~~L~~L~~L~L~~~~~l~~~p--- 342 (840)
+|++|++++|.+.. +..+.++++|++|++++|.++.. +..+ ...++|++|++++| .+....
T Consensus 83 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n-~l~~~~~~~ 161 (461)
T 1z7x_W 83 PSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYC-SLSAASCEP 161 (461)
T ss_dssp TTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTS-CCBGGGHHH
T ss_pred CCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCC-CCCHHHHHH
Confidence 46666666666552 44555666666666666655421 1111 12345666666663 333211
Q ss_pred -cccccCCCCCcEEEccCCcc
Q 003193 343 -PNVISNLTRLEELYMGNSFT 362 (840)
Q Consensus 343 -~~~l~~L~~L~~L~l~~~~~ 362 (840)
...+..+++|++|++++|.+
T Consensus 162 l~~~l~~~~~L~~L~L~~n~i 182 (461)
T 1z7x_W 162 LASVLRAKPDFKELTVSNNDI 182 (461)
T ss_dssp HHHHHHHCTTCCEEECCSSBC
T ss_pred HHHHHhhCCCCCEEECcCCCc
Confidence 11144456666666666543
|
| >1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.74 E-value=1.4e-18 Score=182.68 Aligned_cols=180 Identities=16% Similarity=0.242 Sum_probs=106.3
Q ss_pred CcEEEeccCCccc--CCccc--------CCCcceeEeeccCccccCCCchhh-cCCCCCcEEEcCCCCCCCCChhhcCC-
Q 003193 212 PTAISIPFRGIYE--LPERL--------GFLKLKLFLFFTENLSLQIPDPFF-EGMTELRVLDLTGFRFHSLPSSLGCL- 279 (840)
Q Consensus 212 l~~L~l~~~~~~~--l~~~~--------~~~~L~~L~l~~~~~~~~~~~~~~-~~l~~Lr~L~l~~~~~~~lp~~l~~l- 279 (840)
+++|++++|.+.. ++... .+++|++|++++|.+.+.+|..+| ..+++|++|++++|.++.+|..++.+
T Consensus 65 L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~ 144 (312)
T 1wwl_A 65 IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQ 144 (312)
T ss_dssp HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSSSSHHHHHH
T ss_pred HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcchhHHHHHHH
Confidence 5555555555522 33322 366777777777766666666543 66677777777777776666666665
Q ss_pred ----CCCCEEEccCCccCC--cccccCCCCCCEEeecCCCCcc---cChhh--cCCCCCCEEEccCCCCCCc---cCccc
Q 003193 280 ----INLRTLSLENCLVVD--VAIIGDLKKLEILSLKHSSIEQ---LPREI--GQLTCLKLLDLSNCSKLKE---IRPNV 345 (840)
Q Consensus 280 ----~~L~~L~L~~~~~~~--~~~i~~L~~L~~L~l~~~~l~~---lp~~i--~~L~~L~~L~L~~~~~l~~---~p~~~ 345 (840)
++|++|++++|.+.. +..++++++|++|++++|++.. +|..+ +++++|++|++++ +.+.. ++...
T Consensus 145 ~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~ 223 (312)
T 1wwl_A 145 QWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRN-AGMETPSGVCSAL 223 (312)
T ss_dssp TTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTT-SCCCCHHHHHHHH
T ss_pred HhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCC-CcCcchHHHHHHH
Confidence 677777777777666 3566777777777777776542 34444 6667777777776 34552 23333
Q ss_pred ccCCCCCcEEEccCCcccceecCCCCCCcccccCCCCCCeEEEecCCCCCCCC
Q 003193 346 ISNLTRLEELYMGNSFTQWKVEGQSNASLGELKQLSRLTTLEVHIPDAQVMPQ 398 (840)
Q Consensus 346 l~~L~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~l~~L~~L~l~~~~~~~~~~ 398 (840)
+.++++|++|++++|.+....+ ...+..+++|+.|++++|.+..+|.
T Consensus 224 ~~~l~~L~~L~Ls~N~l~~~~~------~~~~~~l~~L~~L~Ls~N~l~~ip~ 270 (312)
T 1wwl_A 224 AAARVQLQGLDLSHNSLRDAAG------APSCDWPSQLNSLNLSFTGLKQVPK 270 (312)
T ss_dssp HHTTCCCSEEECTTSCCCSSCC------CSCCCCCTTCCEEECTTSCCSSCCS
T ss_pred HhcCCCCCEEECCCCcCCcccc------hhhhhhcCCCCEEECCCCccChhhh
Confidence 4566677777777665542110 1233345566666666665554443
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.74 E-value=2.6e-19 Score=188.73 Aligned_cols=246 Identities=17% Similarity=0.113 Sum_probs=157.0
Q ss_pred CCCcceeEeeccCccccCCCchhhcCCCCCcEEEcCCCCCCCCChhhcCCCCCCEEEccCCccCCcccccCCCCCCEEee
Q 003193 230 GFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPSSLGCLINLRTLSLENCLVVDVAIIGDLKKLEILSL 309 (840)
Q Consensus 230 ~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~~i~~L~~L~~L~l 309 (840)
.+++|++|++++|.+.. ++...|.++++|++|++++|.++..++ +..+++|++|++++|.++.. ...++|++|++
T Consensus 32 ~~~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~n~l~~l---~~~~~L~~L~l 106 (317)
T 3o53_A 32 SAWNVKELDLSGNPLSQ-ISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQEL---LVGPSIETLHA 106 (317)
T ss_dssp TGGGCSEEECTTSCCCC-CCHHHHTTCTTCCEEECTTSCCEEEEE-ETTCTTCCEEECCSSEEEEE---EECTTCCEEEC
T ss_pred cCCCCCEEECcCCccCc-CCHHHhhCCCcCCEEECCCCcCCcchh-hhhcCCCCEEECcCCccccc---cCCCCcCEEEC
Confidence 35567777777776653 343445777777777777777765544 67777777777777776551 12367777777
Q ss_pred cCCCCcccChhhcCCCCCCEEEccCCCCCCccCcccccCCCCCcEEEccCCcccceecCCCCCCcccc-cCCCCCCeEEE
Q 003193 310 KHSSIEQLPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGNSFTQWKVEGQSNASLGEL-KQLSRLTTLEV 388 (840)
Q Consensus 310 ~~~~l~~lp~~i~~L~~L~~L~L~~~~~l~~~p~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~l~~l-~~l~~L~~L~l 388 (840)
++|.++.++.. .+++|++|++++ +.+..+++..++.+++|++|++++|.+..... ..+ ..+++|+.|++
T Consensus 107 ~~n~l~~~~~~--~~~~L~~L~l~~-N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-------~~~~~~l~~L~~L~L 176 (317)
T 3o53_A 107 ANNNISRVSCS--RGQGKKNIYLAN-NKITMLRDLDEGCRSRVQYLDLKLNEIDTVNF-------AELAASSDTLEHLNL 176 (317)
T ss_dssp CSSCCSEEEEC--CCSSCEEEECCS-SCCCSGGGBCTGGGSSEEEEECTTSCCCEEEG-------GGGGGGTTTCCEEEC
T ss_pred CCCccCCcCcc--ccCCCCEEECCC-CCCCCccchhhhccCCCCEEECCCCCCCcccH-------HHHhhccCcCCEEEC
Confidence 77777766542 366777777777 45666655556677777777777776543221 222 34667777777
Q ss_pred ecCCCCCCCCcccccCcceEEEEEcCccCCCCCccccceEEEeeCCCccchhhHHHHHhcccceeecccccccccccccc
Q 003193 389 HIPDAQVMPQDLVFVELERFRICIGDVWSWSDGYETSKTLKLQLNNSTYLGYGMKMLLKRTEDLHLDELAGFKNVVHELD 468 (840)
Q Consensus 389 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~l~ 468 (840)
++|.+..++.... .++++.|+++++....++..+. .+++|+.|++++|... .++..+
T Consensus 177 ~~N~l~~~~~~~~--------------------l~~L~~L~Ls~N~l~~l~~~~~-~l~~L~~L~L~~N~l~-~l~~~~- 233 (317)
T 3o53_A 177 QYNFIYDVKGQVV--------------------FAKLKTLDLSSNKLAFMGPEFQ-SAAGVTWISLRNNKLV-LIEKAL- 233 (317)
T ss_dssp TTSCCCEEECCCC--------------------CTTCCEEECCSSCCCEECGGGG-GGTTCSEEECTTSCCC-EECTTC-
T ss_pred CCCcCcccccccc--------------------cccCCEEECCCCcCCcchhhhc-ccCcccEEECcCCccc-chhhHh-
Confidence 7776655443322 3344445555555555554433 3688999999988544 566666
Q ss_pred chhhcccccEEEeecCCCeEEEEeCCCccccccccceeecccccccccc
Q 003193 469 DEEGFARLRHLHVHNGPEILHILNSDGRVGTFPLLESLFLHNLINLEKV 517 (840)
Q Consensus 469 ~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~ 517 (840)
..+++|+.|++++|+-... ........+++|+.|.+.+++.++..
T Consensus 234 --~~l~~L~~L~l~~N~~~~~--~~~~~~~~~~~L~~l~l~~~~~l~~~ 278 (317)
T 3o53_A 234 --RFSQNLEHFDLRGNGFHCG--TLRDFFSKNQRVQTVAKQTVKKLTGQ 278 (317)
T ss_dssp --CCCTTCCEEECTTCCCBHH--HHHHHHHTCHHHHHHHHHHHHHHHSS
T ss_pred --hcCCCCCEEEccCCCccCc--CHHHHHhccccceEEECCCchhccCC
Confidence 6789999999999873200 11123367889999999988777654
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=2.7e-18 Score=196.41 Aligned_cols=144 Identities=17% Similarity=0.176 Sum_probs=118.6
Q ss_pred ceEEcc------CCCHHHHHHHHHHHhCCCCCCCchhhHHHHHHHHhCCCchhHHHHHHHhcCC--CHHHHHHHHHHhhc
Q 003193 8 EDFLDW------LLSNEEASHLFEKIVGHSAKKSDFETIGVEIVAKCGGLPIAIKTIANALKNK--SPRIWKDAVNQLSN 79 (840)
Q Consensus 8 ~~~~l~------~L~~~~s~~Lf~~~a~~~~~~~~~~~i~~~i~~~c~GlPLai~~~g~~L~~~--~~~~W~~~l~~l~~ 79 (840)
.+|+|+ +|+++|||+||+++.... ..++.++| |+|+||||+++|+.|+++ +.++|+..
T Consensus 285 ~vy~LeL~d~dL~LS~eEA~eLF~~~~g~~-----~eeL~~eI---CgGLPLALkLaGs~Lr~k~~s~eeW~~~------ 350 (1221)
T 1vt4_I 285 TTTHISLDHHSMTLTPDEVKSLLLKYLDCR-----PQDLPREV---LTTNPRRLSIIAESIRDGLATWDNWKHV------ 350 (1221)
T ss_dssp SSCEEEECSSSSCCCHHHHHHHHHHHHCCC-----TTTHHHHH---CCCCHHHHHHHHHHHHHSCSSHHHHHHC------
T ss_pred eEEEecCccccCCcCHHHHHHHHHHHcCCC-----HHHHHHHH---hCCCHHHHHHHHHHHhCCCCCHHHHhcC------
Confidence 467888 999999999999985322 34555555 999999999999999976 78889753
Q ss_pred CCCCCcccccccccceeecccccCchhh-hhHHHhccCCCCCCccCHHHHHHHHhhcccccccchHHHHHHHHHHHHHHH
Q 003193 80 SNPRKIQGMDADLSSIELSYEFLKCKEV-KSLFQLCGLLKDGSRIAVDDLLRYVMGLRLLTNADTLEAARNRVHTLIDNL 158 (840)
Q Consensus 80 ~~~~~~~~~~~~~~~l~lSY~~L~~~~l-k~cfl~~~~fp~~~~i~~~~li~~wia~gfi~~~~~~~~~~~~~~~~~~~L 158 (840)
.......++++||+.||++ . |+||+|||+||+++.|+++.++.+|+++|. + .+.+++++|
T Consensus 351 -------~~~~I~aaLelSYd~Lp~e-elK~cFL~LAIFPed~~I~~elLa~LW~aeGe-------e----dAe~~L~eL 411 (1221)
T 1vt4_I 351 -------NCDKLTTIIESSLNVLEPA-EYRKMFDRLSVFPPSAHIPTILLSLIWFDVIK-------S----DVMVVVNKL 411 (1221)
T ss_dssp -------SCHHHHHHHHHHHHHSCTT-HHHHHHHHTTSSCTTSCEEHHHHHHHHCSSCS-------H----HHHHHHHHH
T ss_pred -------ChhHHHHHHHHHHHhCCHH-HHHHHHHHHhCCCCCCCCCHHHHHHHhcCCCH-------H----HHHHHHHHH
Confidence 1111278899999999998 8 999999999999999999999999999981 1 244589999
Q ss_pred hhccccccCCCCCceEeehhHHHHHH
Q 003193 159 KSASLLFDGDSEDHAKMHRIIHAIAV 184 (840)
Q Consensus 159 ~~~~l~~~~~~~~~~~mhdli~~l~~ 184 (840)
+++||++..+....|+|||++++++.
T Consensus 412 vdRSLLq~d~~~~rYrMHDLllELr~ 437 (1221)
T 1vt4_I 412 HKYSLVEKQPKESTISIPSIYLELKV 437 (1221)
T ss_dssp HTSSSSSBCSSSSEEBCCCHHHHHHH
T ss_pred HhhCCEEEeCCCCEEEehHHHHHHhc
Confidence 99999987655678999999999663
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.73 E-value=7e-19 Score=185.50 Aligned_cols=289 Identities=14% Similarity=0.115 Sum_probs=201.0
Q ss_pred ceeEeeccCccccCCCchhhcCCCCCcEEEcCCCCCCCCC-hhhcCCCCCCEEEccCCccCCcccccCCCCCCEEeecCC
Q 003193 234 LKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLP-SSLGCLINLRTLSLENCLVVDVAIIGDLKKLEILSLKHS 312 (840)
Q Consensus 234 L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp-~~l~~l~~L~~L~L~~~~~~~~~~i~~L~~L~~L~l~~~ 312 (840)
++..++..+.+. ..+..++..+++|++|++++|.++.++ ..+.++++|++|++++|.+.....++.+++|++|++++|
T Consensus 12 l~i~~ls~~~l~-~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n 90 (317)
T 3o53_A 12 YKIEKVTDSSLK-QALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLDLESLSTLRTLDLNNN 90 (317)
T ss_dssp EEEESCCTTTHH-HHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEEETTCTTCCEEECCSS
T ss_pred eeEeeccccchh-hhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchhhhhcCCCCEEECcCC
Confidence 344444444443 344556678889999999999999875 689999999999999999988334999999999999999
Q ss_pred CCcccChhhcCCCCCCEEEccCCCCCCccCcccccCCCCCcEEEccCCcccceecCCCCCCcccccCCCCCCeEEEecCC
Q 003193 313 SIEQLPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGNSFTQWKVEGQSNASLGELKQLSRLTTLEVHIPD 392 (840)
Q Consensus 313 ~l~~lp~~i~~L~~L~~L~L~~~~~l~~~p~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~l~~L~~L~l~~~~ 392 (840)
.++.+|. .++|++|++++ +.+..++. ..+++|++|++++|.+....+ ..+..+++|+.|++++|.
T Consensus 91 ~l~~l~~----~~~L~~L~l~~-n~l~~~~~---~~~~~L~~L~l~~N~l~~~~~-------~~~~~l~~L~~L~Ls~N~ 155 (317)
T 3o53_A 91 YVQELLV----GPSIETLHAAN-NNISRVSC---SRGQGKKNIYLANNKITMLRD-------LDEGCRSRVQYLDLKLNE 155 (317)
T ss_dssp EEEEEEE----CTTCCEEECCS-SCCSEEEE---CCCSSCEEEECCSSCCCSGGG-------BCTGGGSSEEEEECTTSC
T ss_pred ccccccC----CCCcCEEECCC-CccCCcCc---cccCCCCEEECCCCCCCCccc-------hhhhccCCCCEEECCCCC
Confidence 9998773 48999999999 67777765 347899999999997753222 356678899999999988
Q ss_pred CCCCCCcccccCcceEEEEEcCccCCCCCccccceEEEeeCCCccchhhHHHHHhcccceeeccccccccccccccchhh
Q 003193 393 AQVMPQDLVFVELERFRICIGDVWSWSDGYETSKTLKLQLNNSTYLGYGMKMLLKRTEDLHLDELAGFKNVVHELDDEEG 472 (840)
Q Consensus 393 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~~~~ 472 (840)
+...+.... ....++++.|+++++.....+.... +++|+.|++++|... .++..+ ..
T Consensus 156 l~~~~~~~~-----------------~~~l~~L~~L~L~~N~l~~~~~~~~--l~~L~~L~Ls~N~l~-~l~~~~---~~ 212 (317)
T 3o53_A 156 IDTVNFAEL-----------------AASSDTLEHLNLQYNFIYDVKGQVV--FAKLKTLDLSSNKLA-FMGPEF---QS 212 (317)
T ss_dssp CCEEEGGGG-----------------GGGTTTCCEEECTTSCCCEEECCCC--CTTCCEEECCSSCCC-EECGGG---GG
T ss_pred CCcccHHHH-----------------hhccCcCCEEECCCCcCcccccccc--cccCCEEECCCCcCC-cchhhh---cc
Confidence 775432210 1123344555555555444433322 689999999998654 455555 77
Q ss_pred cccccEEEeecCCCeEEEEeCCCccccccccceeecccccccccccccccccCCCCcccCCccEEEEecCCCcccccchh
Q 003193 473 FARLRHLHVHNGPEILHILNSDGRVGTFPLLESLFLHNLINLEKVCDGKVRLNEDDKSFSNLRIIKVEGCHRVKHLFPFS 552 (840)
Q Consensus 473 l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~ 552 (840)
+++|++|++++|. +..++ .....+++|+.|++++++--...... ....+++|+.|++.+++.++...+..
T Consensus 213 l~~L~~L~L~~N~-l~~l~---~~~~~l~~L~~L~l~~N~~~~~~~~~------~~~~~~~L~~l~l~~~~~l~~~~~~~ 282 (317)
T 3o53_A 213 AAGVTWISLRNNK-LVLIE---KALRFSQNLEHFDLRGNGFHCGTLRD------FFSKNQRVQTVAKQTVKKLTGQNEEE 282 (317)
T ss_dssp GTTCSEEECTTSC-CCEEC---TTCCCCTTCCEEECTTCCCBHHHHHH------HHHTCHHHHHHHHHHHHHHHSSSSCC
T ss_pred cCcccEEECcCCc-ccchh---hHhhcCCCCCEEEccCCCccCcCHHH------HHhccccceEEECCCchhccCCchhc
Confidence 9999999999996 44553 34567899999999986532111111 13467888888888776666553321
Q ss_pred HHhhcccccEEEEecccccce
Q 003193 553 LVKNLLQLQKVKVTDCTNLKL 573 (840)
Q Consensus 553 ~~~~l~~L~~L~i~~c~~l~~ 573 (840)
...+.+....-..|..+..
T Consensus 283 --~~~~~~~~~~~~cc~~l~~ 301 (317)
T 3o53_A 283 --CTVPTLGHYGAYCCEDLPA 301 (317)
T ss_dssp --CSSTTCEEETTEEEBCCTT
T ss_pred --cCCCceecccceeeccCCh
Confidence 1223333333445666553
|
| >1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 | Back alignment and structure |
|---|
Probab=99.72 E-value=1.2e-16 Score=167.26 Aligned_cols=191 Identities=17% Similarity=0.255 Sum_probs=161.1
Q ss_pred hccCCCcEEEeccCCcccCCcccCCCcceeEeeccCccccCCCchhhcCCCCCcEEEcCCCCCCCCChhhcCCCCCCEEE
Q 003193 207 KIDEAPTAISIPFRGIYELPERLGFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPSSLGCLINLRTLS 286 (840)
Q Consensus 207 ~~~~~l~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~l~~l~~L~~L~ 286 (840)
...+++++|+++++.+..++....+++|++|++++|.+. .++. +..+++|++|++++|.++.+| .+..+++|++|+
T Consensus 38 ~~l~~L~~L~l~~~~i~~l~~~~~l~~L~~L~L~~n~i~-~~~~--~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L~ 113 (308)
T 1h6u_A 38 ADLDGITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQIT-DLAP--LKNLTKITELELSGNPLKNVS-AIAGLQSIKTLD 113 (308)
T ss_dssp HHHHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCC-CCGG--GTTCCSCCEEECCSCCCSCCG-GGTTCTTCCEEE
T ss_pred HHcCCcCEEEeeCCCccCchhhhccCCCCEEEccCCcCC-CChh--HccCCCCCEEEccCCcCCCch-hhcCCCCCCEEE
Confidence 346689999999999988886668999999999999876 3444 689999999999999999886 689999999999
Q ss_pred ccCCccCCcccccCCCCCCEEeecCCCCcccChhhcCCCCCCEEEccCCCCCCccCcccccCCCCCcEEEccCCccccee
Q 003193 287 LENCLVVDVAIIGDLKKLEILSLKHSSIEQLPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGNSFTQWKV 366 (840)
Q Consensus 287 L~~~~~~~~~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~L~~~~~l~~~p~~~l~~L~~L~~L~l~~~~~~~~~ 366 (840)
+++|.+...+.++++++|++|++++|.++.+|. ++.+++|++|++++ +.+..++. ++.+++|++|++++|.+..
T Consensus 114 l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~-n~l~~~~~--l~~l~~L~~L~l~~n~l~~-- 187 (308)
T 1h6u_A 114 LTSTQITDVTPLAGLSNLQVLYLDLNQITNISP-LAGLTNLQYLSIGN-AQVSDLTP--LANLSKLTTLKADDNKISD-- 187 (308)
T ss_dssp CTTSCCCCCGGGTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCS-SCCCCCGG--GTTCTTCCEEECCSSCCCC--
T ss_pred CCCCCCCCchhhcCCCCCCEEECCCCccCcCcc-ccCCCCccEEEccC-CcCCCChh--hcCCCCCCEEECCCCccCc--
Confidence 999999885569999999999999999998886 89999999999999 57888776 7999999999999987642
Q ss_pred cCCCCCCcccccCCCCCCeEEEecCCCCCCCCcccccCcceEEEEEcC
Q 003193 367 EGQSNASLGELKQLSRLTTLEVHIPDAQVMPQDLVFVELERFRICIGD 414 (840)
Q Consensus 367 ~~~~~~~l~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~ 414 (840)
+..+..+++|+.|++++|.+...+....+++|+.|++..+.
T Consensus 188 -------~~~l~~l~~L~~L~L~~N~l~~~~~l~~l~~L~~L~l~~N~ 228 (308)
T 1h6u_A 188 -------ISPLASLPNLIEVHLKNNQISDVSPLANTSNLFIVTLTNQT 228 (308)
T ss_dssp -------CGGGGGCTTCCEEECTTSCCCBCGGGTTCTTCCEEEEEEEE
T ss_pred -------ChhhcCCCCCCEEEccCCccCccccccCCCCCCEEEccCCe
Confidence 23378889999999999988877654466677777766544
|
| >2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* | Back alignment and structure |
|---|
Probab=99.72 E-value=4.9e-17 Score=167.86 Aligned_cols=203 Identities=21% Similarity=0.305 Sum_probs=146.8
Q ss_pred ccchhhhhhccCCCcEEEeccCCcccCCc-cc-CCCcceeEeeccCccccCCCchhhcCCCCCcEEEcCCCCCCCCC-hh
Q 003193 199 ADLKEELDKIDEAPTAISIPFRGIYELPE-RL-GFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLP-SS 275 (840)
Q Consensus 199 ~~~~~~~~~~~~~l~~L~l~~~~~~~l~~-~~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp-~~ 275 (840)
..+..+|...+.++++|++++|.+..++. .+ .+++|++|++++|.+. .++...|.++++|++|++++|.++.++ ..
T Consensus 17 ~~l~~ip~~l~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 95 (276)
T 2z62_A 17 LNFYKIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGNPIQSLALGA 95 (276)
T ss_dssp SCCSSCCSSSCTTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCC-EECTTTTTTCTTCCEEECTTCCCCEECTTT
T ss_pred CCccccCCCCCCCccEEECCCCcccccCHhHhccccCCcEEECCCCcCC-ccCHHHccCCcCCCEEECCCCccCccChhh
Confidence 34455566566788889998888877764 23 6888888888888766 344445688888888888888888664 66
Q ss_pred hcCCCCCCEEEccCCccCC--cccccCCCCCCEEeecCCCCcc--cChhhcCCCCCCEEEccCCCCCCccCcccccCCCC
Q 003193 276 LGCLINLRTLSLENCLVVD--VAIIGDLKKLEILSLKHSSIEQ--LPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTR 351 (840)
Q Consensus 276 l~~l~~L~~L~L~~~~~~~--~~~i~~L~~L~~L~l~~~~l~~--lp~~i~~L~~L~~L~L~~~~~l~~~p~~~l~~L~~ 351 (840)
+.++++|++|++++|.+.. +..++++++|++|++++|.++. +|..++++++|++|++++ +.+..++...+..+++
T Consensus 96 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~-N~l~~~~~~~~~~l~~ 174 (276)
T 2z62_A 96 FSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSS-NKIQSIYCTDLRVLHQ 174 (276)
T ss_dssp TTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCS-SCCCEECGGGGHHHHT
T ss_pred hcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCC-CCCCcCCHHHhhhhhh
Confidence 8888888888888888877 3468888888888888888875 678888888888888888 5677777655666666
Q ss_pred Cc----EEEccCCcccceecCCCCCCcccccCCCCCCeEEEecCCCCCCCCcc--cccCcceEEEE
Q 003193 352 LE----ELYMGNSFTQWKVEGQSNASLGELKQLSRLTTLEVHIPDAQVMPQDL--VFVELERFRIC 411 (840)
Q Consensus 352 L~----~L~l~~~~~~~~~~~~~~~~l~~l~~l~~L~~L~l~~~~~~~~~~~~--~~~~L~~L~l~ 411 (840)
|+ +|++++|.+....+ ......+|+.|++++|.+..++... .+++|+.+++.
T Consensus 175 L~~l~l~L~ls~n~l~~~~~--------~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~ 232 (276)
T 2z62_A 175 MPLLNLSLDLSLNPMNFIQP--------GAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLH 232 (276)
T ss_dssp CTTCCEEEECCSSCCCEECT--------TSSCSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECC
T ss_pred ccccceeeecCCCcccccCc--------cccCCCcccEEECCCCceeecCHhHhcccccccEEEcc
Confidence 66 78888887653221 1112236888888888877666543 34455554443
|
| >2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* | Back alignment and structure |
|---|
Probab=99.72 E-value=7.7e-17 Score=166.38 Aligned_cols=176 Identities=23% Similarity=0.306 Sum_probs=130.2
Q ss_pred EEEeccCCcccCCcccCCCcceeEeeccCccccCCCchhhcCCCCCcEEEcCCCCCCCCCh-hhcCCCCCCEEEccCCcc
Q 003193 214 AISIPFRGIYELPERLGFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPS-SLGCLINLRTLSLENCLV 292 (840)
Q Consensus 214 ~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~-~l~~l~~L~~L~L~~~~~ 292 (840)
.+.-.+..+..+|..+. +++++|++++|.+.. ++...|.++++|++|++++|.++.++. .+.++++|++|++++|.+
T Consensus 11 ~~~c~~~~l~~ip~~l~-~~l~~L~ls~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l 88 (276)
T 2z62_A 11 TYQCMELNFYKIPDNLP-FSTKNLDLSFNPLRH-LGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPI 88 (276)
T ss_dssp EEECTTSCCSSCCSSSC-TTCCEEECTTCCCCE-ECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCC
T ss_pred eEEecCCCccccCCCCC-CCccEEECCCCcccc-cCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCcc
Confidence 34455556666776542 578999998888764 444455888999999999998887654 688899999999999988
Q ss_pred CC--cccccCCCCCCEEeecCCCCcccCh-hhcCCCCCCEEEccCCCCCCc--cCcccccCCCCCcEEEccCCcccceec
Q 003193 293 VD--VAIIGDLKKLEILSLKHSSIEQLPR-EIGQLTCLKLLDLSNCSKLKE--IRPNVISNLTRLEELYMGNSFTQWKVE 367 (840)
Q Consensus 293 ~~--~~~i~~L~~L~~L~l~~~~l~~lp~-~i~~L~~L~~L~L~~~~~l~~--~p~~~l~~L~~L~~L~l~~~~~~~~~~ 367 (840)
.. +..++++++|++|++++|.++.++. .++++++|++|++++ +.+.. +|.. ++++++|++|++++|.+.....
T Consensus 89 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~-n~l~~~~l~~~-~~~l~~L~~L~Ls~N~l~~~~~ 166 (276)
T 2z62_A 89 QSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAH-NLIQSFKLPEY-FSNLTNLEHLDLSSNKIQSIYC 166 (276)
T ss_dssp CEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCS-SCCCCCCCCGG-GGGCTTCCEEECCSSCCCEECG
T ss_pred CccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcC-CccceecCchh-hccCCCCCEEECCCCCCCcCCH
Confidence 87 4678889999999999998887765 588889999999988 56665 4544 7889999999999887653222
Q ss_pred CCCCCCcccccCCCCCC-eEEEecCCCCCCC
Q 003193 368 GQSNASLGELKQLSRLT-TLEVHIPDAQVMP 397 (840)
Q Consensus 368 ~~~~~~l~~l~~l~~L~-~L~l~~~~~~~~~ 397 (840)
..+..+.+++.|. .|++++|.+..++
T Consensus 167 ----~~~~~l~~L~~l~l~L~ls~n~l~~~~ 193 (276)
T 2z62_A 167 ----TDLRVLHQMPLLNLSLDLSLNPMNFIQ 193 (276)
T ss_dssp ----GGGHHHHTCTTCCEEEECCSSCCCEEC
T ss_pred ----HHhhhhhhccccceeeecCCCcccccC
Confidence 2334455555555 6777777665544
|
| >1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.72 E-value=2.4e-18 Score=180.92 Aligned_cols=154 Identities=18% Similarity=0.206 Sum_probs=109.1
Q ss_pred CCCcceeEeeccCccccCCCchhhcCCCCCcEEEcCCCCCC--CCChhhc-------CCCCCCEEEccCCccCC--cccc
Q 003193 230 GFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFH--SLPSSLG-------CLINLRTLSLENCLVVD--VAII 298 (840)
Q Consensus 230 ~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~--~lp~~l~-------~l~~L~~L~L~~~~~~~--~~~i 298 (840)
..++|+.+++.+|.+ .+|..+... |++|++++|.+. .+|..+. ++++|++|++++|.+.. |..+
T Consensus 41 ~~~~L~~l~l~~n~l--~~p~~~~~~---L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 115 (312)
T 1wwl_A 41 GGRSLEYLLKRVDTE--ADLGQFTDI---IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPL 115 (312)
T ss_dssp EEEECTTHHHHCCTT--CCCHHHHHH---HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCS
T ss_pred cCCCceeEeeccccc--ccHHHHHHH---HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHH
Confidence 355677777777777 667666433 777888888775 4666665 68888888888888775 5555
Q ss_pred --cCCCCCCEEeecCCCCcccChhhcCC-----CCCCEEEccCCCCCCccCcccccCCCCCcEEEccCCcccceecCCCC
Q 003193 299 --GDLKKLEILSLKHSSIEQLPREIGQL-----TCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGNSFTQWKVEGQSN 371 (840)
Q Consensus 299 --~~L~~L~~L~l~~~~l~~lp~~i~~L-----~~L~~L~L~~~~~l~~~p~~~l~~L~~L~~L~l~~~~~~~~~~~~~~ 371 (840)
+.+++|++|++++|.++.+|..++.+ ++|++|++++ +.+..+++..++++++|++|++++|.+....+
T Consensus 116 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~---- 190 (312)
T 1wwl_A 116 LEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQ-AHSLNFSCEQVRVFPALSTLDLSDNPELGERG---- 190 (312)
T ss_dssp SSCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEES-CSCCCCCTTTCCCCSSCCEEECCSCTTCHHHH----
T ss_pred HHhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeC-CCCccchHHHhccCCCCCEEECCCCCcCcchH----
Confidence 78888888888888888778777776 8888888888 56777776557888888888888886432110
Q ss_pred CCcccc--cCCCCCCeEEEecCCCC
Q 003193 372 ASLGEL--KQLSRLTTLEVHIPDAQ 394 (840)
Q Consensus 372 ~~l~~l--~~l~~L~~L~l~~~~~~ 394 (840)
.+..+ ..+++|+.|++++|.+.
T Consensus 191 -~~~~~~~~~l~~L~~L~L~~N~l~ 214 (312)
T 1wwl_A 191 -LISALCPLKFPTLQVLALRNAGME 214 (312)
T ss_dssp -HHHHSCTTSCTTCCEEECTTSCCC
T ss_pred -HHHHHHhccCCCCCEEECCCCcCc
Confidence 01222 56677777777766543
|
| >3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A | Back alignment and structure |
|---|
Probab=99.71 E-value=1.6e-16 Score=163.30 Aligned_cols=176 Identities=24% Similarity=0.296 Sum_probs=136.9
Q ss_pred hccCCCcEEEeccCCcccCCcccCCCcceeEeeccCccccCCCchhhcCCCCCcEEEcCCCCCCCCChh-hcCCCCCCEE
Q 003193 207 KIDEAPTAISIPFRGIYELPERLGFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPSS-LGCLINLRTL 285 (840)
Q Consensus 207 ~~~~~l~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~-l~~l~~L~~L 285 (840)
...++++.+++.++.+..++....+++|++|++++|.+.. ++ .+..+++|++|++++|.++.+|.. ++++++|++|
T Consensus 38 ~~l~~L~~L~l~~~~i~~~~~l~~l~~L~~L~l~~n~l~~-~~--~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 114 (272)
T 3rfs_A 38 NELNSIDQIIANNSDIKSVQGIQYLPNVRYLALGGNKLHD-IS--ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKEL 114 (272)
T ss_dssp HHHTTCCEEECTTSCCCCCTTGGGCTTCCEEECTTSCCCC-CG--GGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEE
T ss_pred ccccceeeeeeCCCCcccccccccCCCCcEEECCCCCCCC-ch--hhcCCCCCCEEECCCCccCccChhHhcCCcCCCEE
Confidence 4567788999999888877766678889999998888764 32 357888899999999888877544 6888899999
Q ss_pred EccCCccCC--cccccCCCCCCEEeecCCCCcccChh-hcCCCCCCEEEccCCCCCCccCcccccCCCCCcEEEccCCcc
Q 003193 286 SLENCLVVD--VAIIGDLKKLEILSLKHSSIEQLPRE-IGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGNSFT 362 (840)
Q Consensus 286 ~L~~~~~~~--~~~i~~L~~L~~L~l~~~~l~~lp~~-i~~L~~L~~L~L~~~~~l~~~p~~~l~~L~~L~~L~l~~~~~ 362 (840)
++++|.+.. +..++++++|++|++++|.++.+|.. ++++++|++|++++ +.+..+++..++.+++|++|++++|.+
T Consensus 115 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~L~~N~l 193 (272)
T 3rfs_A 115 VLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSY-NQLQSLPEGVFDKLTQLKDLRLYQNQL 193 (272)
T ss_dssp ECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred ECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCC-CCcCccCHHHhcCCccCCEEECCCCcC
Confidence 999888887 34578888999999998888888765 57888899999988 567777777678888888888888876
Q ss_pred cceecCCCCCCcccccCCCCCCeEEEecCCC
Q 003193 363 QWKVEGQSNASLGELKQLSRLTTLEVHIPDA 393 (840)
Q Consensus 363 ~~~~~~~~~~~l~~l~~l~~L~~L~l~~~~~ 393 (840)
....+ ..+..+++|+.|++++|..
T Consensus 194 ~~~~~-------~~~~~l~~L~~L~l~~N~~ 217 (272)
T 3rfs_A 194 KSVPD-------GVFDRLTSLQYIWLHDNPW 217 (272)
T ss_dssp SCCCT-------TTTTTCTTCCEEECCSSCB
T ss_pred CccCH-------HHHhCCcCCCEEEccCCCc
Confidence 53221 3456677888888876643
|
| >1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A | Back alignment and structure |
|---|
Probab=99.71 E-value=9.6e-17 Score=166.22 Aligned_cols=158 Identities=21% Similarity=0.276 Sum_probs=133.3
Q ss_pred CCCcceeEeeccCccccCCCchhhcCCCCCcEEEcCCCCCCCC-ChhhcCCCCCCEEEccCCccCCcccccCCCCCCEEe
Q 003193 230 GFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSL-PSSLGCLINLRTLSLENCLVVDVAIIGDLKKLEILS 308 (840)
Q Consensus 230 ~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~l-p~~l~~l~~L~~L~L~~~~~~~~~~i~~L~~L~~L~ 308 (840)
.+++++++++.++.+. .+|..+ .+++++|++++|.++.+ |..+..+++|++|++++|.++.....+.+++|++|+
T Consensus 8 ~l~~l~~l~~~~~~l~-~ip~~~---~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~ 83 (290)
T 1p9a_G 8 KVASHLEVNCDKRNLT-ALPPDL---PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLD 83 (290)
T ss_dssp CSTTCCEEECTTSCCS-SCCSCC---CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECCSCCTTCCEEE
T ss_pred ccCCccEEECCCCCCC-cCCCCC---CCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCCCCCCcCCEEE
Confidence 5788999999988876 677655 36899999999999876 567999999999999999998844448999999999
Q ss_pred ecCCCCcccChhhcCCCCCCEEEccCCCCCCccCcccccCCCCCcEEEccCCcccceecCCCCCCcccccCCCCCCeEEE
Q 003193 309 LKHSSIEQLPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGNSFTQWKVEGQSNASLGELKQLSRLTTLEV 388 (840)
Q Consensus 309 l~~~~l~~lp~~i~~L~~L~~L~L~~~~~l~~~p~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~l~~L~~L~l 388 (840)
+++|.++.+|..+..+++|++|++++ +.+..+|++.++.+++|++|++++|.+....+ ..+..+++|+.|++
T Consensus 84 Ls~N~l~~l~~~~~~l~~L~~L~l~~-N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~-------~~~~~l~~L~~L~L 155 (290)
T 1p9a_G 84 LSHNQLQSLPLLGQTLPALTVLDVSF-NRLTSLPLGALRGLGELQELYLKGNELKTLPP-------GLLTPTPKLEKLSL 155 (290)
T ss_dssp CCSSCCSSCCCCTTTCTTCCEEECCS-SCCCCCCSSTTTTCTTCCEEECTTSCCCCCCT-------TTTTTCTTCCEEEC
T ss_pred CCCCcCCcCchhhccCCCCCEEECCC-CcCcccCHHHHcCCCCCCEEECCCCCCCccCh-------hhcccccCCCEEEC
Confidence 99999999999999999999999999 68888987778999999999999997753222 44667889999999
Q ss_pred ecCCCCCCCCc
Q 003193 389 HIPDAQVMPQD 399 (840)
Q Consensus 389 ~~~~~~~~~~~ 399 (840)
++|.+..++..
T Consensus 156 ~~N~l~~l~~~ 166 (290)
T 1p9a_G 156 ANNNLTELPAG 166 (290)
T ss_dssp TTSCCSCCCTT
T ss_pred CCCcCCccCHH
Confidence 99888766653
|
| >2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* | Back alignment and structure |
|---|
Probab=99.71 E-value=5e-17 Score=163.74 Aligned_cols=199 Identities=12% Similarity=0.180 Sum_probs=162.5
Q ss_pred chhhhhhccCCCcEEEeccCCcccCCcc-c-CCCcceeEeeccCccccCCCchhhcCCCCCcEEEcCC-CCCCCCC-hhh
Q 003193 201 LKEELDKIDEAPTAISIPFRGIYELPER-L-GFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTG-FRFHSLP-SSL 276 (840)
Q Consensus 201 ~~~~~~~~~~~l~~L~l~~~~~~~l~~~-~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~l~~-~~~~~lp-~~l 276 (840)
+..+|. .+.+++.|++++|.+..++.. + .+++|++|++++|.....++...|.++++|++|++++ |.++.+| ..+
T Consensus 23 l~~ip~-~~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f 101 (239)
T 2xwt_C 23 IQRIPS-LPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDAL 101 (239)
T ss_dssp CSSCCC-CCTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSE
T ss_pred ccccCC-CCCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHh
Confidence 556666 677899999999999888763 3 7999999999999733466766679999999999998 9999876 568
Q ss_pred cCCCCCCEEEccCCccCCcccccCCCCCC---EEeecCC-CCcccChh-hcCCCCCC-EEEccCCCCCCccCcccccCCC
Q 003193 277 GCLINLRTLSLENCLVVDVAIIGDLKKLE---ILSLKHS-SIEQLPRE-IGQLTCLK-LLDLSNCSKLKEIRPNVISNLT 350 (840)
Q Consensus 277 ~~l~~L~~L~L~~~~~~~~~~i~~L~~L~---~L~l~~~-~l~~lp~~-i~~L~~L~-~L~L~~~~~l~~~p~~~l~~L~ 350 (840)
.++++|++|++++|.++..+.++.+.+|+ +|++++| .++.+|.. +..+++|+ +|++++ +.+..+|...+.. +
T Consensus 102 ~~l~~L~~L~l~~n~l~~lp~~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~-n~l~~i~~~~~~~-~ 179 (239)
T 2xwt_C 102 KELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYN-NGFTSVQGYAFNG-T 179 (239)
T ss_dssp ECCTTCCEEEEEEECCCSCCCCTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCS-CCCCEECTTTTTT-C
T ss_pred CCCCCCCEEeCCCCCCccccccccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCC-CCCcccCHhhcCC-C
Confidence 89999999999999998843488888888 9999999 99998864 88999999 999998 6788888875555 8
Q ss_pred CCcEEEccCCc-ccceecCCCCCCcccccCC-CCCCeEEEecCCCCCCCCcccccCcceEEE
Q 003193 351 RLEELYMGNSF-TQWKVEGQSNASLGELKQL-SRLTTLEVHIPDAQVMPQDLVFVELERFRI 410 (840)
Q Consensus 351 ~L~~L~l~~~~-~~~~~~~~~~~~l~~l~~l-~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l 410 (840)
+|++|++++|. +....+ ..+..+ ++|+.|++++|.+..++.. .+++|+.|.+
T Consensus 180 ~L~~L~L~~n~~l~~i~~-------~~~~~l~~~L~~L~l~~N~l~~l~~~-~~~~L~~L~l 233 (239)
T 2xwt_C 180 KLDAVYLNKNKYLTVIDK-------DAFGGVYSGPSLLDVSQTSVTALPSK-GLEHLKELIA 233 (239)
T ss_dssp EEEEEECTTCTTCCEECT-------TTTTTCSBCCSEEECTTCCCCCCCCT-TCTTCSEEEC
T ss_pred CCCEEEcCCCCCcccCCH-------HHhhccccCCcEEECCCCccccCChh-HhccCceeec
Confidence 99999999994 543222 445667 8899999999998887766 6677777765
|
| >3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A | Back alignment and structure |
|---|
Probab=99.70 E-value=3.5e-16 Score=158.74 Aligned_cols=175 Identities=22% Similarity=0.336 Sum_probs=145.5
Q ss_pred CCcEEEeccCCcccCCcccCCCcceeEeeccCccccCCCchhhcCCCCCcEEEcCCCCCCCCC-hhhcCCCCCCEEEccC
Q 003193 211 APTAISIPFRGIYELPERLGFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLP-SSLGCLINLRTLSLEN 289 (840)
Q Consensus 211 ~l~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp-~~l~~l~~L~~L~L~~ 289 (840)
..++++++++.+..+|..+. ++++.|++++|.+.. ++...|.++++|++|++++|.++.++ ..+.++++|++|++++
T Consensus 15 ~~~~l~~~~~~l~~~p~~~~-~~l~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 92 (251)
T 3m19_A 15 GKKEVDCQGKSLDSVPSGIP-ADTEKLDLQSTGLAT-LSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLAN 92 (251)
T ss_dssp GGTEEECTTCCCSSCCSCCC-TTCCEEECTTSCCCC-CCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTT
T ss_pred CCeEEecCCCCccccCCCCC-CCCCEEEccCCCcCc-cCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCC
Confidence 45678899999988887664 689999999998875 44445689999999999999998765 4588999999999999
Q ss_pred CccCC--cccccCCCCCCEEeecCCCCcccChh-hcCCCCCCEEEccCCCCCCccCcccccCCCCCcEEEccCCccccee
Q 003193 290 CLVVD--VAIIGDLKKLEILSLKHSSIEQLPRE-IGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGNSFTQWKV 366 (840)
Q Consensus 290 ~~~~~--~~~i~~L~~L~~L~l~~~~l~~lp~~-i~~L~~L~~L~L~~~~~l~~~p~~~l~~L~~L~~L~l~~~~~~~~~ 366 (840)
|.++. +..++.+++|++|++++|+++.+|.. +..+++|++|++++ +.+..+|+..++.+++|++|++++|.+....
T Consensus 93 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~-N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 171 (251)
T 3m19_A 93 NQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNT-NQLQSIPAGAFDKLTNLQTLSLSTNQLQSVP 171 (251)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred CcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcC-CcCCccCHHHcCcCcCCCEEECCCCcCCccC
Confidence 99988 46778999999999999999988876 58899999999999 6888888877899999999999999775322
Q ss_pred cCCCCCCcccccCCCCCCeEEEecCCCCC
Q 003193 367 EGQSNASLGELKQLSRLTTLEVHIPDAQV 395 (840)
Q Consensus 367 ~~~~~~~l~~l~~l~~L~~L~l~~~~~~~ 395 (840)
+ ..+..+++|+.|++++|.+..
T Consensus 172 ~-------~~~~~l~~L~~L~l~~N~~~c 193 (251)
T 3m19_A 172 H-------GAFDRLGKLQTITLFGNQFDC 193 (251)
T ss_dssp T-------TTTTTCTTCCEEECCSCCBCT
T ss_pred H-------HHHhCCCCCCEEEeeCCceeC
Confidence 2 456778889999999887643
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.70 E-value=7.4e-18 Score=188.14 Aligned_cols=239 Identities=18% Similarity=0.121 Sum_probs=128.1
Q ss_pred CcceeEeeccCccccCCCchhhcCCCCCcEEEcCCCCCCCCChhhcCCCCCCEEEccCCccCCcccccCCCCCCEEeecC
Q 003193 232 LKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPSSLGCLINLRTLSLENCLVVDVAIIGDLKKLEILSLKH 311 (840)
Q Consensus 232 ~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~~i~~L~~L~~L~l~~ 311 (840)
++|++|++++|.+.. +++..|..+++|++|++++|.++..++ ++.+++|++|++++|.++..+ ..++|++|++++
T Consensus 34 ~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~l~---~~~~L~~L~L~~ 108 (487)
T 3oja_A 34 WNVKELDLSGNPLSQ-ISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQELL---VGPSIETLHAAN 108 (487)
T ss_dssp GGCCEEECCSSCCCC-CCGGGGTTCTTCCEEECTTSCCEEEEE-CTTCTTCCEEECCSSEEEEEE---ECTTCCEEECCS
T ss_pred CCccEEEeeCCcCCC-CCHHHHhCCCCCCEEEeeCCCCCCCcc-cccCCCCCEEEecCCcCCCCC---CCCCcCEEECcC
Confidence 355555555555543 333333556666666666666554433 555666666666666554411 125566666666
Q ss_pred CCCcccChhhcCCCCCCEEEccCCCCCCccCcccccCCCCCcEEEccCCcccceecCCCCCCccccc-CCCCCCeEEEec
Q 003193 312 SSIEQLPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGNSFTQWKVEGQSNASLGELK-QLSRLTTLEVHI 390 (840)
Q Consensus 312 ~~l~~lp~~i~~L~~L~~L~L~~~~~l~~~p~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~l~~l~-~l~~L~~L~l~~ 390 (840)
|.++.+|. ..+++|++|++++ +.+..+++..++.+++|++|++++|.+....+ ..+. .+++|+.|++++
T Consensus 109 N~l~~~~~--~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-------~~l~~~l~~L~~L~Ls~ 178 (487)
T 3oja_A 109 NNISRVSC--SRGQGKKNIYLAN-NKITMLRDLDEGCRSRVQYLDLKLNEIDTVNF-------AELAASSDTLEHLNLQY 178 (487)
T ss_dssp SCCCCEEE--CCCSSCEEEECCS-SCCCSGGGBCGGGGSSEEEEECTTSCCCEEEG-------GGGGGGTTTCCEEECTT
T ss_pred CcCCCCCc--cccCCCCEEECCC-CCCCCCCchhhcCCCCCCEEECCCCCCCCcCh-------HHHhhhCCcccEEecCC
Confidence 66555543 2345566666665 34444444335556666666666655443222 2222 455566666665
Q ss_pred CCCCCCCCcccccCcceEEEEEcCccCCCCCccccceEEEeeCCCccchhhHHHHHhcccceeeccccccccccccccch
Q 003193 391 PDAQVMPQDLVFVELERFRICIGDVWSWSDGYETSKTLKLQLNNSTYLGYGMKMLLKRTEDLHLDELAGFKNVVHELDDE 470 (840)
Q Consensus 391 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~~ 470 (840)
|.+..++.... +++|+.|+++++....+|..+. .+++|+.|++++|... .+|..+
T Consensus 179 N~l~~~~~~~~--------------------l~~L~~L~Ls~N~l~~~~~~~~-~l~~L~~L~Ls~N~l~-~lp~~l--- 233 (487)
T 3oja_A 179 NFIYDVKGQVV--------------------FAKLKTLDLSSNKLAFMGPEFQ-SAAGVTWISLRNNKLV-LIEKAL--- 233 (487)
T ss_dssp SCCCEEECCCC--------------------CTTCCEEECCSSCCCEECGGGG-GGTTCSEEECTTSCCC-EECTTC---
T ss_pred Ccccccccccc--------------------CCCCCEEECCCCCCCCCCHhHc-CCCCccEEEecCCcCc-ccchhh---
Confidence 55544332222 2233334444444444444432 3578888888887644 456655
Q ss_pred hhcccccEEEeecCCCeEEEEeCCCccccccccceeeccccc
Q 003193 471 EGFARLRHLHVHNGPEILHILNSDGRVGTFPLLESLFLHNLI 512 (840)
Q Consensus 471 ~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~~~ 512 (840)
..+++|+.|++++|+.... ........++.|+.+.+..+.
T Consensus 234 ~~l~~L~~L~l~~N~l~c~--~~~~~~~~l~~L~~l~~~~~~ 273 (487)
T 3oja_A 234 RFSQNLEHFDLRGNGFHCG--TLRDFFSKNQRVQTVAKQTVK 273 (487)
T ss_dssp CCCTTCCEEECTTCCBCHH--HHHHHHTTCHHHHHHHHHHHH
T ss_pred ccCCCCCEEEcCCCCCcCc--chHHHHHhCCCCcEEeccccc
Confidence 6688999999998863200 001223567778877776443
|
| >1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 | Back alignment and structure |
|---|
Probab=99.68 E-value=3.2e-16 Score=164.10 Aligned_cols=201 Identities=20% Similarity=0.243 Sum_probs=158.3
Q ss_pred CCcccCCcccCCCcceeEeeccCccccCCCchhhcCCCCCcEEEcCCCCCCCCChhhcCCCCCCEEEccCCccCCccccc
Q 003193 220 RGIYELPERLGFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPSSLGCLINLRTLSLENCLVVDVAIIG 299 (840)
Q Consensus 220 ~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~~i~ 299 (840)
+.+..+.....+++|+.|.+.++.+. .++ . +..+++|++|++++|.++.++. +..+++|++|++++|.+..++.++
T Consensus 29 ~~~~~~~~~~~l~~L~~L~l~~~~i~-~l~-~-~~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n~l~~~~~~~ 104 (308)
T 1h6u_A 29 SNVTDTVTQADLDGITTLSAFGTGVT-TIE-G-VQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNPLKNVSAIA 104 (308)
T ss_dssp SSTTSEECHHHHHTCCEEECTTSCCC-CCT-T-GGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCCCSCCGGGT
T ss_pred CCcCceecHHHcCCcCEEEeeCCCcc-Cch-h-hhccCCCCEEEccCCcCCCChh-HccCCCCCEEEccCCcCCCchhhc
Confidence 33333333346889999999998876 455 3 5889999999999999999987 999999999999999999977899
Q ss_pred CCCCCCEEeecCCCCcccChhhcCCCCCCEEEccCCCCCCccCcccccCCCCCcEEEccCCcccceecCCCCCCcccccC
Q 003193 300 DLKKLEILSLKHSSIEQLPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGNSFTQWKVEGQSNASLGELKQ 379 (840)
Q Consensus 300 ~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~L~~~~~l~~~p~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~ 379 (840)
++++|++|++++|.++.+|. +..+++|++|++++ +.+..++. ++.+++|++|++++|.+.. +..+..
T Consensus 105 ~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~-n~l~~~~~--l~~l~~L~~L~l~~n~l~~---------~~~l~~ 171 (308)
T 1h6u_A 105 GLQSIKTLDLTSTQITDVTP-LAGLSNLQVLYLDL-NQITNISP--LAGLTNLQYLSIGNAQVSD---------LTPLAN 171 (308)
T ss_dssp TCTTCCEEECTTSCCCCCGG-GTTCTTCCEEECCS-SCCCCCGG--GGGCTTCCEEECCSSCCCC---------CGGGTT
T ss_pred CCCCCCEEECCCCCCCCchh-hcCCCCCCEEECCC-CccCcCcc--ccCCCCccEEEccCCcCCC---------ChhhcC
Confidence 99999999999999999886 99999999999999 57888876 7899999999999997642 233788
Q ss_pred CCCCCeEEEecCCCCCCCCcccccCcceEEEEEcCccCCCCCccccceEEEeeCCCccchhhHHHHHhcccceeeccccc
Q 003193 380 LSRLTTLEVHIPDAQVMPQDLVFVELERFRICIGDVWSWSDGYETSKTLKLQLNNSTYLGYGMKMLLKRTEDLHLDELAG 459 (840)
Q Consensus 380 l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~ 459 (840)
+++|+.|++++|.+..++....+++|+ .|+++++.....+. + ..+++|+.|++++|..
T Consensus 172 l~~L~~L~l~~n~l~~~~~l~~l~~L~--------------------~L~L~~N~l~~~~~-l-~~l~~L~~L~l~~N~i 229 (308)
T 1h6u_A 172 LSKLTTLKADDNKISDISPLASLPNLI--------------------EVHLKNNQISDVSP-L-ANTSNLFIVTLTNQTI 229 (308)
T ss_dssp CTTCCEEECCSSCCCCCGGGGGCTTCC--------------------EEECTTSCCCBCGG-G-TTCTTCCEEEEEEEEE
T ss_pred CCCCCEEECCCCccCcChhhcCCCCCC--------------------EEEccCCccCcccc-c-cCCCCCCEEEccCCee
Confidence 999999999999887766533444444 44555544444442 1 2367888888888764
|
| >2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* | Back alignment and structure |
|---|
Probab=99.67 E-value=1.8e-16 Score=159.63 Aligned_cols=165 Identities=15% Similarity=0.228 Sum_probs=128.5
Q ss_pred CcccCCcccCCCcceeEeeccCccccCCCchhhcCCCCCcEEEcCCCC-CCCCCh-hhcCCCCCCEEEccC-CccCC--c
Q 003193 221 GIYELPERLGFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFR-FHSLPS-SLGCLINLRTLSLEN-CLVVD--V 295 (840)
Q Consensus 221 ~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~-~~~lp~-~l~~l~~L~~L~L~~-~~~~~--~ 295 (840)
.+..+|. -.++++.|++++|.+. .++...|.++++|++|++++|. ++.+|. .+.++++|++|++++ |.++. +
T Consensus 22 ~l~~ip~--~~~~l~~L~l~~n~l~-~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~ 98 (239)
T 2xwt_C 22 DIQRIPS--LPPSTQTLKLIETHLR-TIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDP 98 (239)
T ss_dssp SCSSCCC--CCTTCCEEEEESCCCS-EECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECT
T ss_pred CccccCC--CCCcccEEEEeCCcce-EECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCH
Confidence 3667776 3448999999998876 4555566889999999999997 887765 688999999999998 88887 4
Q ss_pred ccccCCCCCCEEeecCCCCcccChhhcCCCCCC---EEEccCCCCCCccCcccccCCCCCc-EEEccCCcccceecCCCC
Q 003193 296 AIIGDLKKLEILSLKHSSIEQLPREIGQLTCLK---LLDLSNCSKLKEIRPNVISNLTRLE-ELYMGNSFTQWKVEGQSN 371 (840)
Q Consensus 296 ~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~---~L~L~~~~~l~~~p~~~l~~L~~L~-~L~l~~~~~~~~~~~~~~ 371 (840)
..++++++|++|++++|.++.+|. +..+++|+ +|++++|..++.+|...+..+++|+ +|++++|.+. .++.
T Consensus 99 ~~f~~l~~L~~L~l~~n~l~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~-~i~~--- 173 (239)
T 2xwt_C 99 DALKELPLLKFLGIFNTGLKMFPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQG--- 173 (239)
T ss_dssp TSEECCTTCCEEEEEEECCCSCCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC-EECT---
T ss_pred HHhCCCCCCCEEeCCCCCCccccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCc-ccCH---
Confidence 578899999999999999999987 88888888 9999995488888887788899999 9999888765 2221
Q ss_pred CCcccccCCCCCCeEEEecCC-CCCCC
Q 003193 372 ASLGELKQLSRLTTLEVHIPD-AQVMP 397 (840)
Q Consensus 372 ~~l~~l~~l~~L~~L~l~~~~-~~~~~ 397 (840)
..+.. .+|+.|++++|. +..++
T Consensus 174 ---~~~~~-~~L~~L~L~~n~~l~~i~ 196 (239)
T 2xwt_C 174 ---YAFNG-TKLDAVYLNKNKYLTVID 196 (239)
T ss_dssp ---TTTTT-CEEEEEECTTCTTCCEEC
T ss_pred ---hhcCC-CCCCEEEcCCCCCcccCC
Confidence 12222 567778877773 55443
|
| >1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A | Back alignment and structure |
|---|
Probab=99.66 E-value=7.9e-16 Score=159.53 Aligned_cols=174 Identities=24% Similarity=0.301 Sum_probs=146.4
Q ss_pred hccCCCcEEEeccCCcccCCcccCCCcceeEeeccCccccCCCchhhcCCCCCcEEEcCCCCCCCCChhhcCCCCCCEEE
Q 003193 207 KIDEAPTAISIPFRGIYELPERLGFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPSSLGCLINLRTLS 286 (840)
Q Consensus 207 ~~~~~l~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~l~~l~~L~~L~ 286 (840)
....+++.|++++|.+..++....+++|++|++++|.+.. ++. +.++++|++|++++|.++.+|. +..+++|++|+
T Consensus 43 ~~l~~L~~L~l~~~~i~~~~~~~~l~~L~~L~L~~n~l~~-~~~--l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~ 118 (291)
T 1h6t_A 43 NELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTD-IKP--LANLKNLGWLFLDENKVKDLSS-LKDLKKLKSLS 118 (291)
T ss_dssp HHHHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCC-CGG--GTTCTTCCEEECCSSCCCCGGG-GTTCTTCCEEE
T ss_pred hhcCcccEEEccCCCcccChhHhcCCCCCEEEccCCccCC-Ccc--cccCCCCCEEECCCCcCCCChh-hccCCCCCEEE
Confidence 3466799999999999888776688999999999998764 443 6889999999999999988764 89999999999
Q ss_pred ccCCccCCcccccCCCCCCEEeecCCCCcccChhhcCCCCCCEEEccCCCCCCccCcccccCCCCCcEEEccCCccccee
Q 003193 287 LENCLVVDVAIIGDLKKLEILSLKHSSIEQLPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGNSFTQWKV 366 (840)
Q Consensus 287 L~~~~~~~~~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~L~~~~~l~~~p~~~l~~L~~L~~L~l~~~~~~~~~ 366 (840)
+++|.+...+.++.+++|++|++++|.++.+ ..++.+++|++|++++ +.+..+++ ++.+++|++|++++|.+..
T Consensus 119 L~~n~i~~~~~l~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~L~~-N~l~~~~~--l~~l~~L~~L~L~~N~i~~-- 192 (291)
T 1h6t_A 119 LEHNGISDINGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLED-NQISDIVP--LAGLTKLQNLYLSKNHISD-- 192 (291)
T ss_dssp CTTSCCCCCGGGGGCTTCCEEECCSSCCCCC-GGGGGCTTCSEEECCS-SCCCCCGG--GTTCTTCCEEECCSSCCCB--
T ss_pred CCCCcCCCChhhcCCCCCCEEEccCCcCCcc-hhhccCCCCCEEEccC-Cccccchh--hcCCCccCEEECCCCcCCC--
Confidence 9999998877889999999999999999988 5689999999999998 57777766 7899999999999987642
Q ss_pred cCCCCCCcccccCCCCCCeEEEecCCCCCCC
Q 003193 367 EGQSNASLGELKQLSRLTTLEVHIPDAQVMP 397 (840)
Q Consensus 367 ~~~~~~~l~~l~~l~~L~~L~l~~~~~~~~~ 397 (840)
+..+..+++|+.|++++|.+...+
T Consensus 193 -------l~~l~~l~~L~~L~l~~n~i~~~~ 216 (291)
T 1h6t_A 193 -------LRALAGLKNLDVLELFSQECLNKP 216 (291)
T ss_dssp -------CGGGTTCTTCSEEEEEEEEEECCC
T ss_pred -------ChhhccCCCCCEEECcCCcccCCc
Confidence 245788889999999988765433
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.66 E-value=9.5e-17 Score=179.17 Aligned_cols=231 Identities=16% Similarity=0.165 Sum_probs=172.0
Q ss_pred cCCCcEEEeccCCcccCCc-cc-CCCcceeEeeccCccccCCCchhhcCCCCCcEEEcCCCCCCCCChhhcCCCCCCEEE
Q 003193 209 DEAPTAISIPFRGIYELPE-RL-GFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPSSLGCLINLRTLS 286 (840)
Q Consensus 209 ~~~l~~L~l~~~~~~~l~~-~~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~l~~l~~L~~L~ 286 (840)
.++++.|++++|.+..++. .+ .+++|++|++++|.+.+..| +..+++|++|++++|.++.+|. .++|++|+
T Consensus 33 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~---l~~l~~L~~L~Ls~N~l~~l~~----~~~L~~L~ 105 (487)
T 3oja_A 33 AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD---LESLSTLRTLDLNNNYVQELLV----GPSIETLH 105 (487)
T ss_dssp GGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE---CTTCTTCCEEECCSSEEEEEEE----CTTCCEEE
T ss_pred CCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc---cccCCCCCEEEecCCcCCCCCC----CCCcCEEE
Confidence 4489999999999987764 33 79999999999999875444 6899999999999999987764 38999999
Q ss_pred ccCCccCC-cccccCCCCCCEEeecCCCCccc-ChhhcCCCCCCEEEccCCCCCCccCccccc-CCCCCcEEEccCCccc
Q 003193 287 LENCLVVD-VAIIGDLKKLEILSLKHSSIEQL-PREIGQLTCLKLLDLSNCSKLKEIRPNVIS-NLTRLEELYMGNSFTQ 363 (840)
Q Consensus 287 L~~~~~~~-~~~i~~L~~L~~L~l~~~~l~~l-p~~i~~L~~L~~L~L~~~~~l~~~p~~~l~-~L~~L~~L~l~~~~~~ 363 (840)
+++|.+.. +. ..+++|++|++++|.++.+ |..++.+++|++|++++ +.+..+++..+. .+++|++|++++|.+.
T Consensus 106 L~~N~l~~~~~--~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~-N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~ 182 (487)
T 3oja_A 106 AANNNISRVSC--SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKL-NEIDTVNFAELAASSDTLEHLNLQYNFIY 182 (487)
T ss_dssp CCSSCCCCEEE--CCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTT-SCCCEEEGGGGGGGTTTCCEEECTTSCCC
T ss_pred CcCCcCCCCCc--cccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCC-CCCCCcChHHHhhhCCcccEEecCCCccc
Confidence 99999988 33 2468999999999999977 55789999999999999 566665444354 7999999999999875
Q ss_pred ceecCCCCCCcccccCCCCCCeEEEecCCCCCCCCcc-cccCcceEEEEEcCccCCCCCccccceEEEeeCCCccchhhH
Q 003193 364 WKVEGQSNASLGELKQLSRLTTLEVHIPDAQVMPQDL-VFVELERFRICIGDVWSWSDGYETSKTLKLQLNNSTYLGYGM 442 (840)
Q Consensus 364 ~~~~~~~~~~l~~l~~l~~L~~L~l~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~ 442 (840)
.. .....+++|+.|++++|.+..++..+ .+++|+.|+ ++++....+|.++
T Consensus 183 ~~---------~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~--------------------Ls~N~l~~lp~~l 233 (487)
T 3oja_A 183 DV---------KGQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWIS--------------------LRNNKLVLIEKAL 233 (487)
T ss_dssp EE---------ECCCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEE--------------------CTTSCCCEECTTC
T ss_pred cc---------cccccCCCCCEEECCCCCCCCCCHhHcCCCCccEEE--------------------ecCCcCcccchhh
Confidence 33 23345889999999999888776543 444555544 4444444444442
Q ss_pred HHHHhcccceeecccccc-ccccccccchhhcccccEEEee
Q 003193 443 KMLLKRTEDLHLDELAGF-KNVVHELDDEEGFARLRHLHVH 482 (840)
Q Consensus 443 ~~~l~~L~~L~L~~~~~~-~~~~~~l~~~~~l~~L~~L~l~ 482 (840)
. .+++|+.|++++|... ..++..+ ..++.|+.+.+.
T Consensus 234 ~-~l~~L~~L~l~~N~l~c~~~~~~~---~~l~~L~~l~~~ 270 (487)
T 3oja_A 234 R-FSQNLEHFDLRGNGFHCGTLRDFF---SKNQRVQTVAKQ 270 (487)
T ss_dssp C-CCTTCCEEECTTCCBCHHHHHHHH---TTCHHHHHHHHH
T ss_pred c-cCCCCCEEEcCCCCCcCcchHHHH---HhCCCCcEEecc
Confidence 2 2466777777776544 2333333 456666666664
|
| >3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A | Back alignment and structure |
|---|
Probab=99.66 E-value=1.6e-15 Score=153.87 Aligned_cols=165 Identities=22% Similarity=0.336 Sum_probs=143.1
Q ss_pred cCccchhhhhhccCCCcEEEeccCCcccCCcc-c-CCCcceeEeeccCccccCCCchhhcCCCCCcEEEcCCCCCCCCC-
Q 003193 197 NVADLKEELDKIDEAPTAISIPFRGIYELPER-L-GFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLP- 273 (840)
Q Consensus 197 ~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~~~-~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp- 273 (840)
.+..+..+|...+..++.|++++|.+..++.. + .+++|++|++++|.+.. ++...|.++++|++|++++|.++.+|
T Consensus 22 ~~~~l~~~p~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~ 100 (251)
T 3m19_A 22 QGKSLDSVPSGIPADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQT-LSAGVFDDLTELGTLGLANNQLASLPL 100 (251)
T ss_dssp TTCCCSSCCSCCCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCC-CCTTTTTTCTTCCEEECTTSCCCCCCT
T ss_pred CCCCccccCCCCCCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCc-cCHhHhccCCcCCEEECCCCcccccCh
Confidence 34456666776778999999999999877653 3 79999999999999875 55556689999999999999999886
Q ss_pred hhhcCCCCCCEEEccCCccCC-c-ccccCCCCCCEEeecCCCCcccCh-hhcCCCCCCEEEccCCCCCCccCcccccCCC
Q 003193 274 SSLGCLINLRTLSLENCLVVD-V-AIIGDLKKLEILSLKHSSIEQLPR-EIGQLTCLKLLDLSNCSKLKEIRPNVISNLT 350 (840)
Q Consensus 274 ~~l~~l~~L~~L~L~~~~~~~-~-~~i~~L~~L~~L~l~~~~l~~lp~-~i~~L~~L~~L~L~~~~~l~~~p~~~l~~L~ 350 (840)
..+..+++|++|++++|.++. + ..++++++|++|++++|+++.+|. .++.+++|++|++++ +.+..+++..+.+++
T Consensus 101 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~ 179 (251)
T 3m19_A 101 GVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLST-NQLQSVPHGAFDRLG 179 (251)
T ss_dssp TTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS-SCCSCCCTTTTTTCT
T ss_pred hHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCC-CcCCccCHHHHhCCC
Confidence 457899999999999999998 4 457899999999999999999987 589999999999999 688888887789999
Q ss_pred CCcEEEccCCccc
Q 003193 351 RLEELYMGNSFTQ 363 (840)
Q Consensus 351 ~L~~L~l~~~~~~ 363 (840)
+|++|++++|.+.
T Consensus 180 ~L~~L~l~~N~~~ 192 (251)
T 3m19_A 180 KLQTITLFGNQFD 192 (251)
T ss_dssp TCCEEECCSCCBC
T ss_pred CCCEEEeeCCcee
Confidence 9999999999764
|
| >3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A | Back alignment and structure |
|---|
Probab=99.62 E-value=6.8e-15 Score=151.12 Aligned_cols=171 Identities=21% Similarity=0.304 Sum_probs=145.4
Q ss_pred hccCCCcEEEeccCCcccCCcccCCCcceeEeeccCccccCCCchhhcCCCCCcEEEcCCCCCCCCChh-hcCCCCCCEE
Q 003193 207 KIDEAPTAISIPFRGIYELPERLGFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPSS-LGCLINLRTL 285 (840)
Q Consensus 207 ~~~~~l~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~-l~~l~~L~~L 285 (840)
...+++++|++++|.+..++....+++|++|++++|.+. .++...|.++++|++|++++|.++.+|.. ++++++|++|
T Consensus 60 ~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 138 (272)
T 3rfs_A 60 QYLPNVRYLALGGNKLHDISALKELTNLTYLILTGNQLQ-SLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYL 138 (272)
T ss_dssp GGCTTCCEEECTTSCCCCCGGGTTCTTCCEEECTTSCCC-CCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEE
T ss_pred ccCCCCcEEECCCCCCCCchhhcCCCCCCEEECCCCccC-ccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEE
Confidence 567899999999999988876668999999999999887 56666679999999999999999988654 7899999999
Q ss_pred EccCCccCC--cccccCCCCCCEEeecCCCCcccChh-hcCCCCCCEEEccCCCCCCccCcccccCCCCCcEEEccCCcc
Q 003193 286 SLENCLVVD--VAIIGDLKKLEILSLKHSSIEQLPRE-IGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGNSFT 362 (840)
Q Consensus 286 ~L~~~~~~~--~~~i~~L~~L~~L~l~~~~l~~lp~~-i~~L~~L~~L~L~~~~~l~~~p~~~l~~L~~L~~L~l~~~~~ 362 (840)
++++|.++. +..++++++|++|++++|+++.+|.. ++.+++|++|++++ +.+..+++..++++++|++|++++|.+
T Consensus 139 ~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~l~~N~~ 217 (272)
T 3rfs_A 139 NLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQ-NQLKSVPDGVFDRLTSLQYIWLHDNPW 217 (272)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS-SCCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred ECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCC-CcCCccCHHHHhCCcCCCEEEccCCCc
Confidence 999999988 34578999999999999999988765 58999999999999 578888887789999999999999865
Q ss_pred cceecCCCCCCcccccCCCCCCeEEEecCCC
Q 003193 363 QWKVEGQSNASLGELKQLSRLTTLEVHIPDA 393 (840)
Q Consensus 363 ~~~~~~~~~~~l~~l~~l~~L~~L~l~~~~~ 393 (840)
. ..+++|+.|++..+..
T Consensus 218 ~--------------~~~~~l~~l~~~~n~~ 234 (272)
T 3rfs_A 218 D--------------CTCPGIRYLSEWINKH 234 (272)
T ss_dssp C--------------CCTTTTHHHHHHHHHT
T ss_pred c--------------ccCcHHHHHHHHHHhC
Confidence 3 2244566666665543
|
| >1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.62 E-value=9.7e-16 Score=176.40 Aligned_cols=164 Identities=18% Similarity=0.278 Sum_probs=131.3
Q ss_pred ceEEc---cCCCHHHHHHHHHHHhCCCCCCCchhhHHHHHHHHhCCCchhHHHHHHHhcCCCHHHHHHHHHHhhcCCCCC
Q 003193 8 EDFLD---WLLSNEEASHLFEKIVGHSAKKSDFETIGVEIVAKCGGLPIAIKTIANALKNKSPRIWKDAVNQLSNSNPRK 84 (840)
Q Consensus 8 ~~~~l---~~L~~~~s~~Lf~~~a~~~~~~~~~~~i~~~i~~~c~GlPLai~~~g~~L~~~~~~~W~~~l~~l~~~~~~~ 84 (840)
..|++ ++|+++||++||.+.++.. .+...+.+++|+++|+|+||||+.+|+.|+.+. .+|+.+++.+.......
T Consensus 276 ~~~~v~~l~~L~~~ea~~L~~~~~~~~--~~~~~~~~~~i~~~~~G~PLal~~~a~~l~~~~-~~w~~~l~~l~~~~~~~ 352 (591)
T 1z6t_A 276 PKYVVPVESSLGKEKGLEILSLFVNMK--KADLPEQAHSIIKECKGSPLVVSLIGALLRDFP-NRWEYYLKQLQNKQFKR 352 (591)
T ss_dssp CEEEEECCSSCCHHHHHHHHHHHHTSC--GGGSCTHHHHHHHHHTTCHHHHHHHHHHHHHST-TCHHHHHHHHHSCCCCC
T ss_pred CceEeecCCCCCHHHHHHHHHHHhCCC--cccccHHHHHHHHHhCCCcHHHHHHHHHHhcCc-hhHHHHHHHHHHhHHHH
Confidence 45666 4899999999999999742 234467899999999999999999999998653 37999999988665332
Q ss_pred cccc----ccc-ccceeecccccCchhhhhHHHhccCCCCCCccCHHHHHHHHhhcccccccchHHHHHHHHHHHHHHHh
Q 003193 85 IQGM----DAD-LSSIELSYEFLKCKEVKSLFQLCGLLKDGSRIAVDDLLRYVMGLRLLTNADTLEAARNRVHTLIDNLK 159 (840)
Q Consensus 85 ~~~~----~~~-~~~l~lSY~~L~~~~lk~cfl~~~~fp~~~~i~~~~li~~wia~gfi~~~~~~~~~~~~~~~~~~~L~ 159 (840)
+... ... ..++..||+.||++ .|.||++||+||+|+.|+.+.+..+|.+++ + .+.+++++|+
T Consensus 353 ~~~~~~~~~~~l~~~l~~s~~~L~~~-~~~~l~~la~f~~~~~i~~~~l~~l~~~~~--------~----~~~~~l~~L~ 419 (591)
T 1z6t_A 353 IRKSSSYDYEALDEAMSISVEMLRED-IKDYYTDLSILQKDVKVPTKVLCILWDMET--------E----EVEDILQEFV 419 (591)
T ss_dssp SSCCCSSCCHHHHHHHHHHHHTSCTT-THHHHHHGGGCCTTCCEEHHHHHHHHTCCH--------H----HHHHHHHHHH
T ss_pred hhhccccchHHHHHHHHHHHHhCCHH-HHHHHHHccccCCCCccCHHHHHHHhccCH--------H----HHHHHHHHHH
Confidence 2211 112 67899999999998 999999999999999999999999997642 1 2355899999
Q ss_pred hccccccC--CCCCceEeehhHHHHHHHHH
Q 003193 160 SASLLFDG--DSEDHAKMHRIIHAIAVSIA 187 (840)
Q Consensus 160 ~~~l~~~~--~~~~~~~mhdli~~l~~~i~ 187 (840)
++++++.. +....|+||+++|++++...
T Consensus 420 ~~~Ll~~~~~~~~~~~~~H~lv~~~~~~~~ 449 (591)
T 1z6t_A 420 NKSLLFCDRNGKSFRYYLHDLQVDFLTEKN 449 (591)
T ss_dssp HTTSSEEEEETTEEEEECCHHHHHHHHHHT
T ss_pred hCcCeEEecCCCccEEEEcHHHHHHHHhhh
Confidence 99999753 23347999999999998773
|
| >4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.62 E-value=6.4e-16 Score=162.28 Aligned_cols=163 Identities=14% Similarity=0.102 Sum_probs=76.5
Q ss_pred CCcceeEeeccCccccCCCchhh-cCCCCCcEEEcCCCCCCCC-C----hhhcCCCCCCEEEccCCccCC--cccccCCC
Q 003193 231 FLKLKLFLFFTENLSLQIPDPFF-EGMTELRVLDLTGFRFHSL-P----SSLGCLINLRTLSLENCLVVD--VAIIGDLK 302 (840)
Q Consensus 231 ~~~L~~L~l~~~~~~~~~~~~~~-~~l~~Lr~L~l~~~~~~~l-p----~~l~~l~~L~~L~L~~~~~~~--~~~i~~L~ 302 (840)
+++|+.|++++|.+.+..|..++ ..+++|++|++++|.++.. | ..+..+++|++|++++|.+.. +..+++++
T Consensus 90 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~ 169 (310)
T 4glp_A 90 YSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFP 169 (310)
T ss_dssp HSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCT
T ss_pred cCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCC
Confidence 34455555555555544444433 4555555555555555431 1 223345555555555555544 34455555
Q ss_pred CCCEEeecCCCCcc---cCh--hhcCCCCCCEEEccCCCCCCccCcc---cccCCCCCcEEEccCCcccceecCCCCCCc
Q 003193 303 KLEILSLKHSSIEQ---LPR--EIGQLTCLKLLDLSNCSKLKEIRPN---VISNLTRLEELYMGNSFTQWKVEGQSNASL 374 (840)
Q Consensus 303 ~L~~L~l~~~~l~~---lp~--~i~~L~~L~~L~L~~~~~l~~~p~~---~l~~L~~L~~L~l~~~~~~~~~~~~~~~~l 374 (840)
+|++|++++|++.. ++. .++++++|++|++++ +.++.++.. .++.+++|++|++++|.+....+ ..+
T Consensus 170 ~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~-N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p----~~~ 244 (310)
T 4glp_A 170 ALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRN-TGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVN----PSA 244 (310)
T ss_dssp TCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCS-SCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCC----SCC
T ss_pred CCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCC-CCCCchHHHHHHHHhcCCCCCEEECCCCCCCccch----hhH
Confidence 55555555555432 221 124555555555555 334333321 13445555555555554432111 112
Q ss_pred ccccCCCCCCeEEEecCCCCCCCC
Q 003193 375 GELKQLSRLTTLEVHIPDAQVMPQ 398 (840)
Q Consensus 375 ~~l~~l~~L~~L~l~~~~~~~~~~ 398 (840)
..+..+++|+.|++++|.+..+|.
T Consensus 245 ~~~~~~~~L~~L~Ls~N~l~~lp~ 268 (310)
T 4glp_A 245 PRCMWSSALNSLNLSFAGLEQVPK 268 (310)
T ss_dssp SSCCCCTTCCCEECCSSCCCSCCS
T ss_pred HhccCcCcCCEEECCCCCCCchhh
Confidence 222223455555555555554443
|
| >4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* | Back alignment and structure |
|---|
Probab=99.62 E-value=2.9e-15 Score=160.08 Aligned_cols=191 Identities=15% Similarity=0.157 Sum_probs=93.9
Q ss_pred ccchhhhhhccCCCcEEEeccCCcccCCccc--CCCcceeEeeccCccccCCCchhhcCCCCCcE-EEcCCCCCCCC-Ch
Q 003193 199 ADLKEELDKIDEAPTAISIPFRGIYELPERL--GFLKLKLFLFFTENLSLQIPDPFFEGMTELRV-LDLTGFRFHSL-PS 274 (840)
Q Consensus 199 ~~~~~~~~~~~~~l~~L~l~~~~~~~l~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~-L~l~~~~~~~l-p~ 274 (840)
..+..+|...+.++++|++++|.+..+|... ++++|++|++++|.+...+|...|.++++++. +.+.+|+++.+ |.
T Consensus 19 ~~Lt~iP~~l~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~ 98 (350)
T 4ay9_X 19 SKVTEIPSDLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPE 98 (350)
T ss_dssp TTCCSCCTTCCTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTT
T ss_pred CCCCccCcCcCCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCch
Confidence 3444555545555666666666665555431 45566666666655544455555555555443 34444555554 33
Q ss_pred hhcCCCCCCEEEccCCccCC--cccccCCCCCCEEeecCC-CCcccChh-hcCC-CCCCEEEccCCCCCCccCcccccCC
Q 003193 275 SLGCLINLRTLSLENCLVVD--VAIIGDLKKLEILSLKHS-SIEQLPRE-IGQL-TCLKLLDLSNCSKLKEIRPNVISNL 349 (840)
Q Consensus 275 ~l~~l~~L~~L~L~~~~~~~--~~~i~~L~~L~~L~l~~~-~l~~lp~~-i~~L-~~L~~L~L~~~~~l~~~p~~~l~~L 349 (840)
.+..+++|++|++++|.+.. +..+....++.+|++.++ .+..+|.. +..+ ..+++|++++ +.++.+|.. ....
T Consensus 99 ~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~-N~i~~i~~~-~f~~ 176 (350)
T 4ay9_X 99 AFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNK-NGIQEIHNS-AFNG 176 (350)
T ss_dssp SBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCS-SCCCEECTT-SSTT
T ss_pred hhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcccc-ccccCCChh-hccc
Confidence 45555666666666655555 223334444555555443 45555432 2333 2455555555 455555554 2344
Q ss_pred CCCcEEEccCCcccceecCCCCCCcccccCCCCCCeEEEecCCCCCCC
Q 003193 350 TRLEELYMGNSFTQWKVEGQSNASLGELKQLSRLTTLEVHIPDAQVMP 397 (840)
Q Consensus 350 ~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~l~~L~~L~l~~~~~~~~~ 397 (840)
.+|++|++.++.....++ ...+.++++|+.|++++|.+..+|
T Consensus 177 ~~L~~l~l~~~n~l~~i~------~~~f~~l~~L~~LdLs~N~l~~lp 218 (350)
T 4ay9_X 177 TQLDELNLSDNNNLEELP------NDVFHGASGPVILDISRTRIHSLP 218 (350)
T ss_dssp EEEEEEECTTCTTCCCCC------TTTTTTEECCSEEECTTSCCCCCC
T ss_pred cchhHHhhccCCcccCCC------HHHhccCcccchhhcCCCCcCccC
Confidence 455555554322111111 012344455555555555544444
|
| >1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A | Back alignment and structure |
|---|
Probab=99.61 E-value=6.7e-15 Score=152.51 Aligned_cols=181 Identities=21% Similarity=0.282 Sum_probs=148.5
Q ss_pred eccCCcccCCcccCCCcceeEeeccCccccCCCchhhcCCCCCcEEEcCCCCCCCCChhhcCCCCCCEEEccCCccCCcc
Q 003193 217 IPFRGIYELPERLGFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPSSLGCLINLRTLSLENCLVVDVA 296 (840)
Q Consensus 217 l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~ 296 (840)
+..+.+..+.....+++|+.|++.+|.+. .++. +..+++|++|++++|.++.++. +.++++|++|++++|.+..++
T Consensus 31 l~~~~~~~~~~~~~l~~L~~L~l~~~~i~-~~~~--~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~ 106 (291)
T 1h6t_A 31 LKKKSVTDAVTQNELNSIDQIIANNSDIK-SVQG--IQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENKVKDLS 106 (291)
T ss_dssp TTCSCTTSEECHHHHHTCCEEECTTSCCC-CCTT--GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCGG
T ss_pred hcCCCcccccchhhcCcccEEEccCCCcc-cChh--HhcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCCCcCCCCh
Confidence 33444444433446889999999998875 3443 5889999999999999999887 999999999999999999977
Q ss_pred cccCCCCCCEEeecCCCCcccChhhcCCCCCCEEEccCCCCCCccCcccccCCCCCcEEEccCCcccceecCCCCCCccc
Q 003193 297 IIGDLKKLEILSLKHSSIEQLPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGNSFTQWKVEGQSNASLGE 376 (840)
Q Consensus 297 ~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~L~~~~~l~~~p~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~l~~ 376 (840)
.++++++|++|++++|.++.++ .+..+++|++|++++ +.+..++ . ++.+++|++|++++|.+.. +..
T Consensus 107 ~l~~l~~L~~L~L~~n~i~~~~-~l~~l~~L~~L~l~~-n~l~~~~-~-l~~l~~L~~L~L~~N~l~~---------~~~ 173 (291)
T 1h6t_A 107 SLKDLKKLKSLSLEHNGISDIN-GLVHLPQLESLYLGN-NKITDIT-V-LSRLTKLDTLSLEDNQISD---------IVP 173 (291)
T ss_dssp GGTTCTTCCEEECTTSCCCCCG-GGGGCTTCCEEECCS-SCCCCCG-G-GGGCTTCSEEECCSSCCCC---------CGG
T ss_pred hhccCCCCCEEECCCCcCCCCh-hhcCCCCCCEEEccC-CcCCcch-h-hccCCCCCEEEccCCcccc---------chh
Confidence 7999999999999999999985 689999999999999 5777774 3 8999999999999997642 223
Q ss_pred ccCCCCCCeEEEecCCCCCCCCcccccCcceEEEEEcC
Q 003193 377 LKQLSRLTTLEVHIPDAQVMPQDLVFVELERFRICIGD 414 (840)
Q Consensus 377 l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~ 414 (840)
+..+++|+.|++++|.+..++....+++|+.|++..+.
T Consensus 174 l~~l~~L~~L~L~~N~i~~l~~l~~l~~L~~L~l~~n~ 211 (291)
T 1h6t_A 174 LAGLTKLQNLYLSKNHISDLRALAGLKNLDVLELFSQE 211 (291)
T ss_dssp GTTCTTCCEEECCSSCCCBCGGGTTCTTCSEEEEEEEE
T ss_pred hcCCCccCEEECCCCcCCCChhhccCCCCCEEECcCCc
Confidence 78899999999999998877654466777777766543
|
| >3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} | Back alignment and structure |
|---|
Probab=99.61 E-value=9.3e-15 Score=145.63 Aligned_cols=149 Identities=21% Similarity=0.315 Sum_probs=126.0
Q ss_pred CcEEEeccCCcccCCcccCCCcceeEeeccCccccCCCchhhcCCCCCcEEEcCCCCCCCCCh-hhcCCCCCCEEEccCC
Q 003193 212 PTAISIPFRGIYELPERLGFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPS-SLGCLINLRTLSLENC 290 (840)
Q Consensus 212 l~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~-~l~~l~~L~~L~L~~~ 290 (840)
.+.++.+++.+..+|..+. ++|+.|++++|.+....| ..|.++++|++|++++|.++.+|. .+..+++|++|+|++|
T Consensus 21 ~~~v~c~~~~l~~ip~~~~-~~L~~L~Ls~n~i~~~~~-~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N 98 (229)
T 3e6j_A 21 GTTVDCRSKRHASVPAGIP-TNAQILYLHDNQITKLEP-GVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTN 98 (229)
T ss_dssp TTEEECTTSCCSSCCSCCC-TTCSEEECCSSCCCCCCT-TTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCEeEccCCCcCccCCCCC-CCCCEEEcCCCccCccCH-HHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCC
Confidence 4568888888888887654 889999999998875444 455889999999999999998875 4688999999999999
Q ss_pred ccCC-c-ccccCCCCCCEEeecCCCCcccChhhcCCCCCCEEEccCCCCCCccCcccccCCCCCcEEEccCCccc
Q 003193 291 LVVD-V-AIIGDLKKLEILSLKHSSIEQLPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGNSFTQ 363 (840)
Q Consensus 291 ~~~~-~-~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~L~~~~~l~~~p~~~l~~L~~L~~L~l~~~~~~ 363 (840)
.++. + ..++.+++|++|++++|+++.+|..+..+++|++|++++ +.+..+|...+..+++|++|++.+|.+.
T Consensus 99 ~l~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 172 (229)
T 3e6j_A 99 QLTVLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQ-NQLKSIPHGAFDRLSSLTHAYLFGNPWD 172 (229)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCSCCTTGGGCTTCSEEECCS-SCCCCCCTTTTTTCTTCCEEECTTSCBC
T ss_pred cCCccChhHhCcchhhCeEeccCCcccccCcccccCCCCCEEECCC-CcCCccCHHHHhCCCCCCEEEeeCCCcc
Confidence 9888 3 457899999999999999999999999999999999998 6888888777888999999999888654
|
| >2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.60 E-value=6.3e-15 Score=145.76 Aligned_cols=149 Identities=13% Similarity=0.246 Sum_probs=110.2
Q ss_pred cEEEeccCCcccCCcccCCCcceeEeeccCccccCCCchhhcCCCCCcEEEcCCCCCCCCCh-hhcCCCCCCEEEccCCc
Q 003193 213 TAISIPFRGIYELPERLGFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPS-SLGCLINLRTLSLENCL 291 (840)
Q Consensus 213 ~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~-~l~~l~~L~~L~L~~~~ 291 (840)
+.++++++.+..+|..+ ...++.|++++|.+....+..+|.++++|++|++++|.++.++. .|.++++|++|++++|.
T Consensus 14 ~~l~~s~n~l~~iP~~~-~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~ 92 (220)
T 2v70_A 14 TTVDCSNQKLNKIPEHI-PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNR 92 (220)
T ss_dssp TEEECCSSCCSSCCSCC-CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred CEeEeCCCCcccCccCC-CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCc
Confidence 47788888887777644 34567788888877655555666778888888888888876654 67888888888888888
Q ss_pred cCC--cccccCCCCCCEEeecCCCCccc-ChhhcCCCCCCEEEccCCCCCCccCcccccCCCCCcEEEccCCccc
Q 003193 292 VVD--VAIIGDLKKLEILSLKHSSIEQL-PREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGNSFTQ 363 (840)
Q Consensus 292 ~~~--~~~i~~L~~L~~L~l~~~~l~~l-p~~i~~L~~L~~L~L~~~~~l~~~p~~~l~~L~~L~~L~l~~~~~~ 363 (840)
++. +..++++++|++|++++|+++.+ |..+..+++|++|++++ +.+..+++..+..+++|++|++++|.+.
T Consensus 93 l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 166 (220)
T 2v70_A 93 LENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYD-NQITTVAPGAFDTLHSLSTLNLLANPFN 166 (220)
T ss_dssp CCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTT-SCCCCBCTTTTTTCTTCCEEECCSCCEE
T ss_pred cCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCC-CcCCEECHHHhcCCCCCCEEEecCcCCc
Confidence 777 34577888888888888888766 55677788888888887 5677775555777888888887777543
|
| >4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* | Back alignment and structure |
|---|
Probab=99.60 E-value=6.2e-15 Score=157.48 Aligned_cols=120 Identities=15% Similarity=0.202 Sum_probs=64.6
Q ss_pred eeEeeccCccccCCCchhhcCCCCCcEEEcCCCCCCCCCh-hhcCCCCCCEEEccCCccCC---cccccCCCCCCE-Eee
Q 003193 235 KLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPS-SLGCLINLRTLSLENCLVVD---VAIIGDLKKLEI-LSL 309 (840)
Q Consensus 235 ~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~-~l~~l~~L~~L~L~~~~~~~---~~~i~~L~~L~~-L~l 309 (840)
++++.++++++ .+|.++ .+++++|++++|.++.+|+ .|.++++|++|+|++|.+.. +..+.++++|++ +.+
T Consensus 12 ~~v~C~~~~Lt-~iP~~l---~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~ 87 (350)
T 4ay9_X 12 RVFLCQESKVT-EIPSDL---PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIE 87 (350)
T ss_dssp TEEEEESTTCC-SCCTTC---CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEE
T ss_pred CEEEecCCCCC-ccCcCc---CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcc
Confidence 34455555443 455544 2456666666666666654 35666666666666666544 234555655554 334
Q ss_pred cCCCCcccC-hhhcCCCCCCEEEccCCCCCCccCcccccCCCCCcEEEccC
Q 003193 310 KHSSIEQLP-REIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGN 359 (840)
Q Consensus 310 ~~~~l~~lp-~~i~~L~~L~~L~L~~~~~l~~~p~~~l~~L~~L~~L~l~~ 359 (840)
.+|+++.+| ..+..+++|++|++++ +.+..+|...+....++..|++.+
T Consensus 88 ~~N~l~~l~~~~f~~l~~L~~L~l~~-n~l~~~~~~~~~~~~~l~~l~l~~ 137 (350)
T 4ay9_X 88 KANNLLYINPEAFQNLPNLQYLLISN-TGIKHLPDVHKIHSLQKVLLDIQD 137 (350)
T ss_dssp EETTCCEECTTSBCCCTTCCEEEEEE-ECCSSCCCCTTCCBSSCEEEEEES
T ss_pred cCCcccccCchhhhhccccccccccc-cccccCCchhhcccchhhhhhhcc
Confidence 445666553 3345666666666665 455555544334444455555443
|
| >1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A | Back alignment and structure |
|---|
Probab=99.59 E-value=6.6e-15 Score=167.38 Aligned_cols=174 Identities=24% Similarity=0.302 Sum_probs=148.8
Q ss_pred hccCCCcEEEeccCCcccCCcccCCCcceeEeeccCccccCCCchhhcCCCCCcEEEcCCCCCCCCChhhcCCCCCCEEE
Q 003193 207 KIDEAPTAISIPFRGIYELPERLGFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPSSLGCLINLRTLS 286 (840)
Q Consensus 207 ~~~~~l~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~l~~l~~L~~L~ 286 (840)
..+..++.|+++++.+..++....+++|+.|++++|.+.. ++. +..+++|++|+|++|.+..+| .+..+++|++|+
T Consensus 40 ~~L~~L~~L~l~~n~i~~l~~l~~l~~L~~L~Ls~N~l~~-~~~--l~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~~L~ 115 (605)
T 1m9s_A 40 NELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTD-IKP--LTNLKNLGWLFLDENKIKDLS-SLKDLKKLKSLS 115 (605)
T ss_dssp HHHTTCCCCBCTTCCCCCCTTGGGCTTCCEEECTTSCCCC-CGG--GGGCTTCCEEECCSSCCCCCT-TSTTCTTCCEEE
T ss_pred hcCCCCCEEECcCCCCCCChHHccCCCCCEEEeeCCCCCC-Chh--hccCCCCCEEECcCCCCCCCh-hhccCCCCCEEE
Confidence 4567889999999999888876689999999999998774 443 688999999999999999877 689999999999
Q ss_pred ccCCccCCcccccCCCCCCEEeecCCCCcccChhhcCCCCCCEEEccCCCCCCccCcccccCCCCCcEEEccCCccccee
Q 003193 287 LENCLVVDVAIIGDLKKLEILSLKHSSIEQLPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGNSFTQWKV 366 (840)
Q Consensus 287 L~~~~~~~~~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~L~~~~~l~~~p~~~l~~L~~L~~L~l~~~~~~~~~ 366 (840)
|++|.+..++.++.+++|+.|+|++|.++.+ ..+..+++|++|+|++ +.+..+++ +..+++|++|++++|.+..
T Consensus 116 Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~~l-~~l~~l~~L~~L~Ls~-N~l~~~~~--l~~l~~L~~L~Ls~N~i~~-- 189 (605)
T 1m9s_A 116 LEHNGISDINGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLED-NQISDIVP--LAGLTKLQNLYLSKNHISD-- 189 (605)
T ss_dssp CTTSCCCCCGGGGGCTTCSEEECCSSCCCCC-GGGGSCTTCSEEECCS-SCCCCCGG--GTTCTTCCEEECCSSCCCB--
T ss_pred ecCCCCCCCccccCCCccCEEECCCCccCCc-hhhcccCCCCEEECcC-CcCCCchh--hccCCCCCEEECcCCCCCC--
Confidence 9999999877899999999999999999988 5789999999999999 56777766 7899999999999997642
Q ss_pred cCCCCCCcccccCCCCCCeEEEecCCCCCCC
Q 003193 367 EGQSNASLGELKQLSRLTTLEVHIPDAQVMP 397 (840)
Q Consensus 367 ~~~~~~~l~~l~~l~~L~~L~l~~~~~~~~~ 397 (840)
+..+..+++|+.|++++|.+...|
T Consensus 190 -------l~~l~~l~~L~~L~L~~N~l~~~p 213 (605)
T 1m9s_A 190 -------LRALAGLKNLDVLELFSQECLNKP 213 (605)
T ss_dssp -------CGGGTTCTTCSEEECCSEEEECCC
T ss_pred -------ChHHccCCCCCEEEccCCcCcCCc
Confidence 356788899999999988765544
|
| >2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A | Back alignment and structure |
|---|
Probab=99.59 E-value=3.1e-16 Score=167.04 Aligned_cols=121 Identities=18% Similarity=0.194 Sum_probs=54.6
Q ss_pred CCcEEEeccCCcccCCccc-CC--CcceeEeeccCccccCCCchhhcCCCCCcEEEcCCCCCCC--CChhhcCCCCCCEE
Q 003193 211 APTAISIPFRGIYELPERL-GF--LKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHS--LPSSLGCLINLRTL 285 (840)
Q Consensus 211 ~l~~L~l~~~~~~~l~~~~-~~--~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~--lp~~l~~l~~L~~L 285 (840)
..++++++++.+. +..+ .+ ++++.|.+.+|.+....+. + .++++|++|++++|.++. +|..+..+++|++|
T Consensus 48 ~~~~l~l~~~~~~--~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~-~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L 123 (336)
T 2ast_B 48 LWQTLDLTGKNLH--PDVTGRLLSQGVIAFRCPRSFMDQPLAE-H-FSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNL 123 (336)
T ss_dssp TSSEEECTTCBCC--HHHHHHHHHTTCSEEECTTCEECSCCCS-C-CCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEE
T ss_pred hheeeccccccCC--HHHHHhhhhccceEEEcCCccccccchh-h-ccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEE
Confidence 3566777665442 1111 12 4445555554444433222 1 234455555555554431 44444445555555
Q ss_pred EccCCccCC--cccccCCCCCCEEeecCC-CCc--ccChhhcCCCCCCEEEccCC
Q 003193 286 SLENCLVVD--VAIIGDLKKLEILSLKHS-SIE--QLPREIGQLTCLKLLDLSNC 335 (840)
Q Consensus 286 ~L~~~~~~~--~~~i~~L~~L~~L~l~~~-~l~--~lp~~i~~L~~L~~L~L~~~ 335 (840)
++++|.+.. +..++++++|++|++++| .++ .+|..+.++++|++|++++|
T Consensus 124 ~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~ 178 (336)
T 2ast_B 124 SLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWC 178 (336)
T ss_dssp ECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCC
T ss_pred eCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCC
Confidence 555544443 344444444444444444 344 23444444444444444443
|
| >2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.59 E-value=1e-14 Score=143.26 Aligned_cols=165 Identities=24% Similarity=0.343 Sum_probs=130.7
Q ss_pred cEEEeccCCcccCCcccCCCcceeEeeccCccccCCCchhhcCCCCCcEEEcCCCCCCCCChh-hcCCCCCCEEEccCCc
Q 003193 213 TAISIPFRGIYELPERLGFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPSS-LGCLINLRTLSLENCL 291 (840)
Q Consensus 213 ~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~-l~~l~~L~~L~L~~~~ 291 (840)
+.+..+++.+..+|... .++++.|++++|.+. .++...|.++++|++|++++|.++.+|.. +..+++|++|++++|.
T Consensus 10 ~~v~c~~~~l~~~p~~~-~~~l~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~ 87 (208)
T 2o6s_A 10 TTVECYSQGRTSVPTGI-PAQTTYLDLETNSLK-SLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQ 87 (208)
T ss_dssp TEEECCSSCCSSCCSCC-CTTCSEEECCSSCCC-CCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CEEEecCCCccCCCCCC-CCCCcEEEcCCCccC-cCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCc
Confidence 45667777777777544 458889999888876 56666678899999999999999888654 6889999999999999
Q ss_pred cCC-c-ccccCCCCCCEEeecCCCCcccChh-hcCCCCCCEEEccCCCCCCccCcccccCCCCCcEEEccCCcccceecC
Q 003193 292 VVD-V-AIIGDLKKLEILSLKHSSIEQLPRE-IGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGNSFTQWKVEG 368 (840)
Q Consensus 292 ~~~-~-~~i~~L~~L~~L~l~~~~l~~lp~~-i~~L~~L~~L~L~~~~~l~~~p~~~l~~L~~L~~L~l~~~~~~~~~~~ 368 (840)
++. + ..++++++|++|++++|.++.+|.. +.++++|++|++++ +.+..++...+.++++|++|++++|.+.
T Consensus 88 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~-N~l~~~~~~~~~~l~~L~~L~l~~N~~~----- 161 (208)
T 2o6s_A 88 LQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQ-NQLKSVPDGVFDRLTSLQYIWLHDNPWD----- 161 (208)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS-SCCSCCCTTTTTTCTTCCEEECCSCCBC-----
T ss_pred CCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCC-CccceeCHHHhccCCCccEEEecCCCee-----
Confidence 888 3 4578999999999999999988765 68899999999998 5788888777888999999999988543
Q ss_pred CCCCCcccccCCCCCCeEEEecCCCC
Q 003193 369 QSNASLGELKQLSRLTTLEVHIPDAQ 394 (840)
Q Consensus 369 ~~~~~l~~l~~l~~L~~L~l~~~~~~ 394 (840)
..+++|+.|+++.+...
T Consensus 162 ---------~~~~~l~~L~~~~n~~~ 178 (208)
T 2o6s_A 162 ---------CTCPGIRYLSEWINKHS 178 (208)
T ss_dssp ---------CCTTTTHHHHHHHHHCT
T ss_pred ---------cCCCCHHHHHHHHHhCC
Confidence 23456777777766544
|
| >2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A | Back alignment and structure |
|---|
Probab=99.58 E-value=1.2e-14 Score=143.63 Aligned_cols=147 Identities=22% Similarity=0.332 Sum_probs=101.4
Q ss_pred cEEEeccCCcccCCcccCCCcceeEeeccCccccCCCchhhcCCCCCcEEEcCCCCCCCC-ChhhcCCCCCCEEEccCCc
Q 003193 213 TAISIPFRGIYELPERLGFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSL-PSSLGCLINLRTLSLENCL 291 (840)
Q Consensus 213 ~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~l-p~~l~~l~~L~~L~L~~~~ 291 (840)
+.++.+++.+..+|..+. ++++.|++++|.+. .++...|..+++|++|++++|.++.+ |..|.++++|++|+|++|.
T Consensus 14 ~~v~c~~~~l~~iP~~l~-~~l~~L~l~~n~i~-~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~ 91 (220)
T 2v9t_B 14 NIVDCRGKGLTEIPTNLP-ETITEIRLEQNTIK-VIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNK 91 (220)
T ss_dssp TEEECTTSCCSSCCSSCC-TTCCEEECCSSCCC-EECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSC
T ss_pred CEEEcCCCCcCcCCCccC-cCCCEEECCCCcCC-CcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCc
Confidence 456677777777776543 56777777777665 34444457777777777777777755 6677777777777777777
Q ss_pred cCC-c-ccccCCCCCCEEeecCCCCccc-ChhhcCCCCCCEEEccCCCCCCccCcccccCCCCCcEEEccCCcc
Q 003193 292 VVD-V-AIIGDLKKLEILSLKHSSIEQL-PREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGNSFT 362 (840)
Q Consensus 292 ~~~-~-~~i~~L~~L~~L~l~~~~l~~l-p~~i~~L~~L~~L~L~~~~~l~~~p~~~l~~L~~L~~L~l~~~~~ 362 (840)
++. + ..+.++++|++|++++|.++.+ |..+..+++|++|++++ +.+..+++..+..+++|++|++++|.+
T Consensus 92 l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~L~~N~~ 164 (220)
T 2v9t_B 92 ITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYD-NKLQTIAKGTFSPLRAIQTMHLAQNPF 164 (220)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS-SCCSCCCTTTTTTCTTCCEEECCSSCE
T ss_pred CCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCC-CcCCEECHHHHhCCCCCCEEEeCCCCc
Confidence 776 3 3356777777777777777766 34567777777777777 566666666567777777777777654
|
| >4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.58 E-value=7e-15 Score=154.31 Aligned_cols=191 Identities=15% Similarity=0.128 Sum_probs=148.5
Q ss_pred cCCCcEEEeccCCccc-CCcc---cCCCcceeEeeccCccccCCC---chhhcCCCCCcEEEcCCCCCCCCC-hhhcCCC
Q 003193 209 DEAPTAISIPFRGIYE-LPER---LGFLKLKLFLFFTENLSLQIP---DPFFEGMTELRVLDLTGFRFHSLP-SSLGCLI 280 (840)
Q Consensus 209 ~~~l~~L~l~~~~~~~-l~~~---~~~~~L~~L~l~~~~~~~~~~---~~~~~~l~~Lr~L~l~~~~~~~lp-~~l~~l~ 280 (840)
..++++|++++|.+.. .|.. ..+++|++|++++|.+....+ ...+..+++|++|++++|.+..+| ..++.++
T Consensus 90 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~ 169 (310)
T 4glp_A 90 YSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFP 169 (310)
T ss_dssp HSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCT
T ss_pred cCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCC
Confidence 4569999999999854 4444 468999999999999876544 122357999999999999998765 6789999
Q ss_pred CCCEEEccCCccCC------cccccCCCCCCEEeecCCCCcccChh----hcCCCCCCEEEccCCCCCCcc-CcccccCC
Q 003193 281 NLRTLSLENCLVVD------VAIIGDLKKLEILSLKHSSIEQLPRE----IGQLTCLKLLDLSNCSKLKEI-RPNVISNL 349 (840)
Q Consensus 281 ~L~~L~L~~~~~~~------~~~i~~L~~L~~L~l~~~~l~~lp~~----i~~L~~L~~L~L~~~~~l~~~-p~~~l~~L 349 (840)
+|++|++++|.+.. ...++++++|++|++++|+++.+|.. ++.+++|++|++++ +.+... |.. ++.+
T Consensus 170 ~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~-N~l~~~~p~~-~~~~ 247 (310)
T 4glp_A 170 ALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSH-NSLRATVNPS-APRC 247 (310)
T ss_dssp TCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTT-SCCCCCCCSC-CSSC
T ss_pred CCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCC-CCCCccchhh-HHhc
Confidence 99999999998654 23357899999999999999877763 57889999999999 566666 654 5666
Q ss_pred ---CCCcEEEccCCcccceecCCCCCCcccccCCCCCCeEEEecCCCCCCCCcccccCcceEEEE
Q 003193 350 ---TRLEELYMGNSFTQWKVEGQSNASLGELKQLSRLTTLEVHIPDAQVMPQDLVFVELERFRIC 411 (840)
Q Consensus 350 ---~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~ 411 (840)
++|++|++++|.+. .++ ..+. ++|+.|++++|.+..+|....+++|+.|++.
T Consensus 248 ~~~~~L~~L~Ls~N~l~-~lp-------~~~~--~~L~~L~Ls~N~l~~~~~~~~l~~L~~L~L~ 302 (310)
T 4glp_A 248 MWSSALNSLNLSFAGLE-QVP-------KGLP--AKLRVLDLSSNRLNRAPQPDELPEVDNLTLD 302 (310)
T ss_dssp CCCTTCCCEECCSSCCC-SCC-------SCCC--SCCSCEECCSCCCCSCCCTTSCCCCSCEECS
T ss_pred cCcCcCCEEECCCCCCC-chh-------hhhc--CCCCEEECCCCcCCCCchhhhCCCccEEECc
Confidence 69999999999876 222 2222 6899999999998876654455566665554
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.57 E-value=1.5e-14 Score=140.51 Aligned_cols=147 Identities=19% Similarity=0.210 Sum_probs=72.8
Q ss_pred ccCCCcEEEeccCCcccCCcccCCCcceeEeeccCccccCCCchhhcCCCCCcEEEcCCCCCCC-CChhhcCCCCCCEEE
Q 003193 208 IDEAPTAISIPFRGIYELPERLGFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHS-LPSSLGCLINLRTLS 286 (840)
Q Consensus 208 ~~~~l~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~-lp~~l~~l~~L~~L~ 286 (840)
..+++++|++++|.+..++....+++|++|++++|.+. .+. .+..+++|++|++++|.++. .|..++.+++|++|+
T Consensus 42 ~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~l~~n~~~--~~~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ 118 (197)
T 4ezg_A 42 QMNSLTYITLANINVTDLTGIEYAHNIKDLTINNIHAT--NYN-PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLD 118 (197)
T ss_dssp HHHTCCEEEEESSCCSCCTTGGGCTTCSEEEEESCCCS--CCG-GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEE
T ss_pred hcCCccEEeccCCCccChHHHhcCCCCCEEEccCCCCC--cch-hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEE
Confidence 34556666666666655553334555555555555322 111 23445555555555555543 344455555555555
Q ss_pred ccCCccCC--cccccCCCCCCEEeecCCC-CcccChhhcCCCCCCEEEccCCCCCCccCcccccCCCCCcEEEccCCc
Q 003193 287 LENCLVVD--VAIIGDLKKLEILSLKHSS-IEQLPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGNSF 361 (840)
Q Consensus 287 L~~~~~~~--~~~i~~L~~L~~L~l~~~~-l~~lp~~i~~L~~L~~L~L~~~~~l~~~p~~~l~~L~~L~~L~l~~~~ 361 (840)
+++|.+.. +..++++++|++|++++|. ++.+| .+..+++|++|++++ +.+..++. +..+++|++|++++|.
T Consensus 119 Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~-n~i~~~~~--l~~l~~L~~L~l~~N~ 192 (197)
T 4ezg_A 119 ISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQF-DGVHDYRG--IEDFPKLNQLYAFSQT 192 (197)
T ss_dssp CCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTT-BCCCCCTT--GGGCSSCCEEEECBC-
T ss_pred ecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCC-CCCcChHH--hccCCCCCEEEeeCcc
Confidence 55555544 4445555555555555554 44444 345555555555554 33444431 4445555555554443
|
| >1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.57 E-value=4e-15 Score=151.58 Aligned_cols=170 Identities=19% Similarity=0.202 Sum_probs=120.6
Q ss_pred cCCCcEEEeccCCcccCCcccCCCcceeEeeccCccccCCCchhhcCCCCCcEEEcCCCCCCCCChhhcCCCCCCEEEcc
Q 003193 209 DEAPTAISIPFRGIYELPERLGFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPSSLGCLINLRTLSLE 288 (840)
Q Consensus 209 ~~~l~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~l~~l~~L~~L~L~ 288 (840)
..++..+.+..+.+..++....+++|+.|++.+|.+. .++ . +..+++|++|++++|.++.+|. +.++++|++|+++
T Consensus 18 l~~l~~l~l~~~~i~~~~~~~~l~~L~~L~l~~n~i~-~l~-~-l~~l~~L~~L~L~~N~i~~~~~-l~~l~~L~~L~L~ 93 (263)
T 1xeu_A 18 LANAVKQNLGKQSVTDLVSQKELSGVQNFNGDNSNIQ-SLA-G-MQFFTNLKELHLSHNQISDLSP-LKDLTKLEELSVN 93 (263)
T ss_dssp HHHHHHHHHTCSCTTSEECHHHHTTCSEEECTTSCCC-CCT-T-GGGCTTCCEEECCSSCCCCCGG-GTTCSSCCEEECC
T ss_pred HHHHHHHHhcCCCcccccchhhcCcCcEEECcCCCcc-cch-H-HhhCCCCCEEECCCCccCCChh-hccCCCCCEEECC
Confidence 3344455566666666664446777788888777655 444 2 4677888888888888887776 7888888888888
Q ss_pred CCccCCcccccCCCCCCEEeecCCCCcccChhhcCCCCCCEEEccCCCCCCccCcccccCCCCCcEEEccCCcccceecC
Q 003193 289 NCLVVDVAIIGDLKKLEILSLKHSSIEQLPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGNSFTQWKVEG 368 (840)
Q Consensus 289 ~~~~~~~~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~L~~~~~l~~~p~~~l~~L~~L~~L~l~~~~~~~~~~~ 368 (840)
+|.++..+.+.. .+|++|++++|.++.+| .+.++++|++|++++ +.++.++. ++.+++|++|++++|.+..
T Consensus 94 ~N~l~~l~~~~~-~~L~~L~L~~N~l~~~~-~l~~l~~L~~L~Ls~-N~i~~~~~--l~~l~~L~~L~L~~N~i~~---- 164 (263)
T 1xeu_A 94 RNRLKNLNGIPS-ACLSRLFLDNNELRDTD-SLIHLKNLEILSIRN-NKLKSIVM--LGFLSKLEVLDLHGNEITN---- 164 (263)
T ss_dssp SSCCSCCTTCCC-SSCCEEECCSSCCSBSG-GGTTCTTCCEEECTT-SCCCBCGG--GGGCTTCCEEECTTSCCCB----
T ss_pred CCccCCcCcccc-CcccEEEccCCccCCCh-hhcCcccccEEECCC-CcCCCChH--HccCCCCCEEECCCCcCcc----
Confidence 888777333444 78888888888888775 477888888888887 56777753 7788888888888876542
Q ss_pred CCCCCcccccCCCCCCeEEEecCCCCCC
Q 003193 369 QSNASLGELKQLSRLTTLEVHIPDAQVM 396 (840)
Q Consensus 369 ~~~~~l~~l~~l~~L~~L~l~~~~~~~~ 396 (840)
+..+..+++|+.|++++|.+...
T Consensus 165 -----~~~l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 165 -----TGGLTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp -----CTTSTTCCCCCEEEEEEEEEECC
T ss_pred -----hHHhccCCCCCEEeCCCCcccCC
Confidence 14566777788888887765544
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.57 E-value=1.4e-14 Score=140.80 Aligned_cols=151 Identities=17% Similarity=0.247 Sum_probs=129.5
Q ss_pred CCCcceeEeeccCccccCCCchhhcCCCCCcEEEcCCCCCCCCChhhcCCCCCCEEEccCCccCC--cccccCCCCCCEE
Q 003193 230 GFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPSSLGCLINLRTLSLENCLVVD--VAIIGDLKKLEIL 307 (840)
Q Consensus 230 ~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~--~~~i~~L~~L~~L 307 (840)
.+++|+.|++++|.+. .+| . +..+++|++|++++|.++.++ .+..+++|++|++++|.+.. +..++++++|++|
T Consensus 42 ~l~~L~~L~l~~n~i~-~l~-~-l~~l~~L~~L~l~~n~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L 117 (197)
T 4ezg_A 42 QMNSLTYITLANINVT-DLT-G-IEYAHNIKDLTINNIHATNYN-PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLL 117 (197)
T ss_dssp HHHTCCEEEEESSCCS-CCT-T-GGGCTTCSEEEEESCCCSCCG-GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEE
T ss_pred hcCCccEEeccCCCcc-ChH-H-HhcCCCCCEEEccCCCCCcch-hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEE
Confidence 5789999999999887 566 3 588999999999999877665 78999999999999999987 8899999999999
Q ss_pred eecCCCCcc-cChhhcCCCCCCEEEccCCCCCCccCcccccCCCCCcEEEccCCcccceecCCCCCCcccccCCCCCCeE
Q 003193 308 SLKHSSIEQ-LPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGNSFTQWKVEGQSNASLGELKQLSRLTTL 386 (840)
Q Consensus 308 ~l~~~~l~~-lp~~i~~L~~L~~L~L~~~~~l~~~p~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~l~~L~~L 386 (840)
++++|.++. .|..++++++|++|++++|..++.+|. ++.+++|++|++++|.+.. +..+..+++|+.|
T Consensus 118 ~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~~--l~~l~~L~~L~l~~n~i~~---------~~~l~~l~~L~~L 186 (197)
T 4ezg_A 118 DISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMP--LKTLPELKSLNIQFDGVHD---------YRGIEDFPKLNQL 186 (197)
T ss_dssp ECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCGG--GGGCSSCCEEECTTBCCCC---------CTTGGGCSSCCEE
T ss_pred EecCCccCcHhHHHHhhCCCCCEEEccCCCCccccHh--hcCCCCCCEEECCCCCCcC---------hHHhccCCCCCEE
Confidence 999999985 678899999999999999665888873 8999999999999997642 2367788999999
Q ss_pred EEecCCCCC
Q 003193 387 EVHIPDAQV 395 (840)
Q Consensus 387 ~l~~~~~~~ 395 (840)
++++|.+..
T Consensus 187 ~l~~N~i~~ 195 (197)
T 4ezg_A 187 YAFSQTIGG 195 (197)
T ss_dssp EECBC----
T ss_pred EeeCcccCC
Confidence 999987653
|
| >2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A | Back alignment and structure |
|---|
Probab=99.56 E-value=2.7e-15 Score=159.82 Aligned_cols=175 Identities=17% Similarity=0.247 Sum_probs=140.6
Q ss_pred CCCcEEEeccCCcccCC-cccCCCcceeEeeccCccccCCCchhhcCCCCCcEEEcCCCCCC-CCChhhcCCCCCCEEEc
Q 003193 210 EAPTAISIPFRGIYELP-ERLGFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFH-SLPSSLGCLINLRTLSL 287 (840)
Q Consensus 210 ~~l~~L~l~~~~~~~l~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~-~lp~~l~~l~~L~~L~L 287 (840)
..++.+++.+|.+...+ ....+++|++|++++|.+........+..+++|++|++++|.++ ..|..++.+++|++|++
T Consensus 70 ~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L 149 (336)
T 2ast_B 70 QGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNL 149 (336)
T ss_dssp TTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEEC
T ss_pred ccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEEC
Confidence 67889999998885544 34478999999999998764422345689999999999999987 56788999999999999
Q ss_pred cCC-ccCC---cccccCCCCCCEEeecCC-CCcc--cChhhcCCC-CCCEEEccCCC-CC--CccCcccccCCCCCcEEE
Q 003193 288 ENC-LVVD---VAIIGDLKKLEILSLKHS-SIEQ--LPREIGQLT-CLKLLDLSNCS-KL--KEIRPNVISNLTRLEELY 356 (840)
Q Consensus 288 ~~~-~~~~---~~~i~~L~~L~~L~l~~~-~l~~--lp~~i~~L~-~L~~L~L~~~~-~l--~~~p~~~l~~L~~L~~L~ 356 (840)
++| .++. +..++++++|++|++++| .++. +|..+..++ +|++|++++|. .+ ..+|.. ++++++|++|+
T Consensus 150 ~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~-~~~~~~L~~L~ 228 (336)
T 2ast_B 150 SGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTL-VRRCPNLVHLD 228 (336)
T ss_dssp TTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHH-HHHCTTCSEEE
T ss_pred CCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHH-HhhCCCCCEEe
Confidence 999 5764 456888999999999999 8884 788889999 99999999974 34 334443 67899999999
Q ss_pred ccCCc-ccceecCCCCCCcccccCCCCCCeEEEecCC
Q 003193 357 MGNSF-TQWKVEGQSNASLGELKQLSRLTTLEVHIPD 392 (840)
Q Consensus 357 l~~~~-~~~~~~~~~~~~l~~l~~l~~L~~L~l~~~~ 392 (840)
+++|. +.. ..+..+.++++|+.|++++|.
T Consensus 229 l~~~~~l~~-------~~~~~l~~l~~L~~L~l~~~~ 258 (336)
T 2ast_B 229 LSDSVMLKN-------DCFQEFFQLNYLQHLSLSRCY 258 (336)
T ss_dssp CTTCTTCCG-------GGGGGGGGCTTCCEEECTTCT
T ss_pred CCCCCcCCH-------HHHHHHhCCCCCCEeeCCCCC
Confidence 99986 322 234567788999999998875
|
| >2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A | Back alignment and structure |
|---|
Probab=99.55 E-value=8.3e-16 Score=167.00 Aligned_cols=183 Identities=16% Similarity=0.110 Sum_probs=122.3
Q ss_pred ccCCCcEEEeccCCcccC-----Cccc-CCCcceeEeeccCc---cccCCCchh------hcCCCCCcEEEcCCCCCCC-
Q 003193 208 IDEAPTAISIPFRGIYEL-----PERL-GFLKLKLFLFFTEN---LSLQIPDPF------FEGMTELRVLDLTGFRFHS- 271 (840)
Q Consensus 208 ~~~~l~~L~l~~~~~~~l-----~~~~-~~~~L~~L~l~~~~---~~~~~~~~~------~~~l~~Lr~L~l~~~~~~~- 271 (840)
..+++++|++++|.+... +..+ .+++|++|++++|. +.+.+|..+ +..+++|++|++++|.++.
T Consensus 30 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~ 109 (386)
T 2ca6_A 30 EDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPT 109 (386)
T ss_dssp HCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTT
T ss_pred cCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHH
Confidence 456788888888877432 2222 57888888887753 333445443 3678888888888888875
Q ss_pred ----CChhhcCCCCCCEEEccCCccCC--ccc----ccCC---------CCCCEEeecCCCCc--ccC---hhhcCCCCC
Q 003193 272 ----LPSSLGCLINLRTLSLENCLVVD--VAI----IGDL---------KKLEILSLKHSSIE--QLP---REIGQLTCL 327 (840)
Q Consensus 272 ----lp~~l~~l~~L~~L~L~~~~~~~--~~~----i~~L---------~~L~~L~l~~~~l~--~lp---~~i~~L~~L 327 (840)
+|..+..+++|++|+|++|.+.. +.. +..+ ++|++|++++|+++ .+| ..+..+++|
T Consensus 110 ~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L 189 (386)
T 2ca6_A 110 AQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLL 189 (386)
T ss_dssp THHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCc
Confidence 67778888888888888888764 222 3333 78888888888876 444 466778888
Q ss_pred CEEEccCCCCCCc-----cCcccccCCCCCcEEEccCCcccceecCCCCCCcccccCCCCCCeEEEecCCCC
Q 003193 328 KLLDLSNCSKLKE-----IRPNVISNLTRLEELYMGNSFTQWKVEGQSNASLGELKQLSRLTTLEVHIPDAQ 394 (840)
Q Consensus 328 ~~L~L~~~~~l~~-----~p~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~l~~L~~L~l~~~~~~ 394 (840)
++|++++| .+.. +.+..+.++++|++|++++|.+..... ......+..+++|+.|++++|.+.
T Consensus 190 ~~L~L~~n-~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~---~~l~~~l~~~~~L~~L~L~~n~i~ 257 (386)
T 2ca6_A 190 HTVKMVQN-GIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGS---SALAIALKSWPNLRELGLNDCLLS 257 (386)
T ss_dssp CEEECCSS-CCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHH---HHHHHHGGGCTTCCEEECTTCCCC
T ss_pred CEEECcCC-CCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHH---HHHHHHHccCCCcCEEECCCCCCc
Confidence 88888884 4541 222126778888888888886531000 011245667778888888877654
|
| >1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A | Back alignment and structure |
|---|
Probab=99.54 E-value=8.9e-15 Score=166.31 Aligned_cols=185 Identities=20% Similarity=0.266 Sum_probs=151.5
Q ss_pred cEEEeccCCcccCCcccCCCcceeEeeccCccccCCCchhhcCCCCCcEEEcCCCCCCCCChhhcCCCCCCEEEccCCcc
Q 003193 213 TAISIPFRGIYELPERLGFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPSSLGCLINLRTLSLENCLV 292 (840)
Q Consensus 213 ~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~l~~l~~L~~L~L~~~~~ 292 (840)
..+.+..+.+..+.....+++|+.|.+.+|.+. .++. +..+++|++|+|++|.+..+|. +..+++|++|+|++|.+
T Consensus 24 ~~l~l~~~~i~~~~~~~~L~~L~~L~l~~n~i~-~l~~--l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l 99 (605)
T 1m9s_A 24 IKDNLKKKSVTDAVTQNELNSIDQIIANNSDIK-SVQG--IQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDENKI 99 (605)
T ss_dssp HHHHTTCSCTTSEECHHHHTTCCCCBCTTCCCC-CCTT--GGGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECCSSCC
T ss_pred HHHhccCCCcccccchhcCCCCCEEECcCCCCC-CChH--HccCCCCCEEEeeCCCCCCChh-hccCCCCCEEECcCCCC
Confidence 334445555555544457889999999998875 4443 5889999999999999999886 99999999999999999
Q ss_pred CCcccccCCCCCCEEeecCCCCcccChhhcCCCCCCEEEccCCCCCCccCcccccCCCCCcEEEccCCcccceecCCCCC
Q 003193 293 VDVAIIGDLKKLEILSLKHSSIEQLPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGNSFTQWKVEGQSNA 372 (840)
Q Consensus 293 ~~~~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~L~~~~~l~~~p~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~ 372 (840)
..++.++.+++|++|+|++|.++.+| .+..+++|+.|+|++ +.+..++ . ++.+++|+.|++++|.+..
T Consensus 100 ~~l~~l~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~~L~Ls~-N~l~~l~-~-l~~l~~L~~L~Ls~N~l~~-------- 167 (605)
T 1m9s_A 100 KDLSSLKDLKKLKSLSLEHNGISDIN-GLVHLPQLESLYLGN-NKITDIT-V-LSRLTKLDTLSLEDNQISD-------- 167 (605)
T ss_dssp CCCTTSTTCTTCCEEECTTSCCCCCG-GGGGCTTCSEEECCS-SCCCCCG-G-GGSCTTCSEEECCSSCCCC--------
T ss_pred CCChhhccCCCCCEEEecCCCCCCCc-cccCCCccCEEECCC-CccCCch-h-hcccCCCCEEECcCCcCCC--------
Confidence 99778999999999999999999986 589999999999999 5777774 3 8999999999999997642
Q ss_pred CcccccCCCCCCeEEEecCCCCCCCCcccccCcceEEEEEcC
Q 003193 373 SLGELKQLSRLTTLEVHIPDAQVMPQDLVFVELERFRICIGD 414 (840)
Q Consensus 373 ~l~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~ 414 (840)
+..+..+++|+.|++++|.+..++....+++|+.|++..+.
T Consensus 168 -~~~l~~l~~L~~L~Ls~N~i~~l~~l~~l~~L~~L~L~~N~ 208 (605)
T 1m9s_A 168 -IVPLAGLTKLQNLYLSKNHISDLRALAGLKNLDVLELFSQE 208 (605)
T ss_dssp -CGGGTTCTTCCEEECCSSCCCBCGGGTTCTTCSEEECCSEE
T ss_pred -chhhccCCCCCEEECcCCCCCCChHHccCCCCCEEEccCCc
Confidence 12278899999999999998877654467777777765443
|
| >2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.53 E-value=3.7e-14 Score=139.28 Aligned_cols=161 Identities=19% Similarity=0.254 Sum_probs=135.0
Q ss_pred CccchhhhhhccCCCcEEEeccCCcccCCccc--CCCcceeEeeccCccccCCCchhhcCCCCCcEEEcCCCCCCCCChh
Q 003193 198 VADLKEELDKIDEAPTAISIPFRGIYELPERL--GFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPSS 275 (840)
Q Consensus 198 ~~~~~~~~~~~~~~l~~L~l~~~~~~~l~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~ 275 (840)
+..+..+|.....++++|++++|.+..++... .+++|++|++.+|.+. .++...|..+++|++|++++|.++.+|..
T Consensus 16 ~~~l~~~p~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~ 94 (208)
T 2o6s_A 16 SQGRTSVPTGIPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQ-SLPNGVFNKLTSLTYLNLSTNQLQSLPNG 94 (208)
T ss_dssp SSCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTT
T ss_pred CCCccCCCCCCCCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccC-ccChhhcCCCCCcCEEECCCCcCCccCHh
Confidence 34455556667789999999999998887643 7999999999999887 66777779999999999999999988765
Q ss_pred -hcCCCCCCEEEccCCccCC-c-ccccCCCCCCEEeecCCCCcccChh-hcCCCCCCEEEccCCCCCCccCcccccCCCC
Q 003193 276 -LGCLINLRTLSLENCLVVD-V-AIIGDLKKLEILSLKHSSIEQLPRE-IGQLTCLKLLDLSNCSKLKEIRPNVISNLTR 351 (840)
Q Consensus 276 -l~~l~~L~~L~L~~~~~~~-~-~~i~~L~~L~~L~l~~~~l~~lp~~-i~~L~~L~~L~L~~~~~l~~~p~~~l~~L~~ 351 (840)
+.++++|++|++++|.+.. + ..++++++|++|++++|.++.+|.. +.++++|++|++++|. + .+.+++
T Consensus 95 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~-~-------~~~~~~ 166 (208)
T 2o6s_A 95 VFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNP-W-------DCTCPG 166 (208)
T ss_dssp TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCC-B-------CCCTTT
T ss_pred HhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCC-e-------ecCCCC
Confidence 7899999999999999988 4 4589999999999999999998876 7899999999999952 2 356778
Q ss_pred CcEEEccCCcccceec
Q 003193 352 LEELYMGNSFTQWKVE 367 (840)
Q Consensus 352 L~~L~l~~~~~~~~~~ 367 (840)
|+.|++..|.+.+.++
T Consensus 167 l~~L~~~~n~~~g~ip 182 (208)
T 2o6s_A 167 IRYLSEWINKHSGVVR 182 (208)
T ss_dssp THHHHHHHHHCTTTBB
T ss_pred HHHHHHHHHhCCceee
Confidence 8999888877664444
|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.52 E-value=2.2e-14 Score=153.78 Aligned_cols=172 Identities=21% Similarity=0.233 Sum_probs=127.0
Q ss_pred cEEEeccCCcccCCcccCCCcceeEeeccCccccCCCchhhc-CCCCCcEEEcCCCCCCCCC-hhhcCCCCCCEEEccCC
Q 003193 213 TAISIPFRGIYELPERLGFLKLKLFLFFTENLSLQIPDPFFE-GMTELRVLDLTGFRFHSLP-SSLGCLINLRTLSLENC 290 (840)
Q Consensus 213 ~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~-~l~~Lr~L~l~~~~~~~lp-~~l~~l~~L~~L~L~~~ 290 (840)
+.++.+++.+..+|..+ .+.++.|++++|.+.. ++...|. ++++|++|++++|.++.++ ..|.++++|++|+|++|
T Consensus 21 ~~l~c~~~~l~~iP~~~-~~~l~~L~Ls~N~l~~-l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N 98 (361)
T 2xot_A 21 NILSCSKQQLPNVPQSL-PSYTALLDLSHNNLSR-LRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSN 98 (361)
T ss_dssp TEEECCSSCCSSCCSSC-CTTCSEEECCSSCCCE-ECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CEEEeCCCCcCccCccC-CCCCCEEECCCCCCCc-cChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCC
Confidence 56778888887777654 3457888888887764 4444455 7888888888888888765 46888888888888888
Q ss_pred ccCC--cccccCCCCCCEEeecCCCCccc-ChhhcCCCCCCEEEccCCCCCCccCcccc---cCCCCCcEEEccCCcccc
Q 003193 291 LVVD--VAIIGDLKKLEILSLKHSSIEQL-PREIGQLTCLKLLDLSNCSKLKEIRPNVI---SNLTRLEELYMGNSFTQW 364 (840)
Q Consensus 291 ~~~~--~~~i~~L~~L~~L~l~~~~l~~l-p~~i~~L~~L~~L~L~~~~~l~~~p~~~l---~~L~~L~~L~l~~~~~~~ 364 (840)
.+.. +..+.++.+|++|++++|.++.+ |..+..+++|++|++++ +.+..+|...+ ..+++|++|++++|.+..
T Consensus 99 ~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~-N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 177 (361)
T 2xot_A 99 HLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQ-NQISRFPVELIKDGNKLPKLMLLDLSSNKLKK 177 (361)
T ss_dssp CCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS-SCCCSCCGGGTC----CTTCCEEECCSSCCCC
T ss_pred cCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCC-CcCCeeCHHHhcCcccCCcCCEEECCCCCCCc
Confidence 8877 35678888888888888888877 56688888888888888 67888887755 568888888888887652
Q ss_pred eecCCCCCCcccccCCCC--CCeEEEecCCCC
Q 003193 365 KVEGQSNASLGELKQLSR--LTTLEVHIPDAQ 394 (840)
Q Consensus 365 ~~~~~~~~~l~~l~~l~~--L~~L~l~~~~~~ 394 (840)
.. ...+..++. |+.|++.+|...
T Consensus 178 l~-------~~~~~~l~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 178 LP-------LTDLQKLPAWVKNGLYLHNNPLE 202 (361)
T ss_dssp CC-------HHHHHHSCHHHHTTEECCSSCEE
T ss_pred cC-------HHHhhhccHhhcceEEecCCCcc
Confidence 11 234455554 467888877654
|
| >2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A | Back alignment and structure |
|---|
Probab=99.52 E-value=8.7e-14 Score=137.55 Aligned_cols=147 Identities=20% Similarity=0.297 Sum_probs=118.7
Q ss_pred eeEeeccCccccCCCchhhcCCCCCcEEEcCCCCCCCCCh-hhcCCCCCCEEEccCCccCC--cccccCCCCCCEEeecC
Q 003193 235 KLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPS-SLGCLINLRTLSLENCLVVD--VAIIGDLKKLEILSLKH 311 (840)
Q Consensus 235 ~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~-~l~~l~~L~~L~L~~~~~~~--~~~i~~L~~L~~L~l~~ 311 (840)
+.+++.++.+. .+|..+ .++|++|++++|.++.+|. .+..+++|++|++++|.+.. +..+.++++|++|++++
T Consensus 14 ~~v~c~~~~l~-~iP~~l---~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~ 89 (220)
T 2v9t_B 14 NIVDCRGKGLT-EIPTNL---PETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYG 89 (220)
T ss_dssp TEEECTTSCCS-SCCSSC---CTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCS
T ss_pred CEEEcCCCCcC-cCCCcc---CcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCC
Confidence 45677766654 567654 2689999999999987765 78889999999999999887 67899999999999999
Q ss_pred CCCcccChh-hcCCCCCCEEEccCCCCCCccCcccccCCCCCcEEEccCCcccceecCCCCCCcccccCCCCCCeEEEec
Q 003193 312 SSIEQLPRE-IGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGNSFTQWKVEGQSNASLGELKQLSRLTTLEVHI 390 (840)
Q Consensus 312 ~~l~~lp~~-i~~L~~L~~L~L~~~~~l~~~p~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~l~~L~~L~l~~ 390 (840)
|.++.+|.. +..+++|++|++++ +.+..+++..+..+++|++|++++|.+....+ ..+..+++|+.|++++
T Consensus 90 N~l~~l~~~~f~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-------~~~~~l~~L~~L~L~~ 161 (220)
T 2v9t_B 90 NKITELPKSLFEGLFSLQLLLLNA-NKINCLRVDAFQDLHNLNLLSLYDNKLQTIAK-------GTFSPLRAIQTMHLAQ 161 (220)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT-------TTTTTCTTCCEEECCS
T ss_pred CcCCccCHhHccCCCCCCEEECCC-CCCCEeCHHHcCCCCCCCEEECCCCcCCEECH-------HHHhCCCCCCEEEeCC
Confidence 999999876 57899999999998 67888877778899999999999987653222 3466778888898887
Q ss_pred CCC
Q 003193 391 PDA 393 (840)
Q Consensus 391 ~~~ 393 (840)
|..
T Consensus 162 N~~ 164 (220)
T 2v9t_B 162 NPF 164 (220)
T ss_dssp SCE
T ss_pred CCc
Confidence 764
|
| >3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} | Back alignment and structure |
|---|
Probab=99.51 E-value=1.8e-13 Score=153.65 Aligned_cols=176 Identities=16% Similarity=0.240 Sum_probs=133.0
Q ss_pred CCCcEEEeccCCcccCCcccCCCcceeEeeccCccccCCCchhhcCCCCCcEEEcCCCCCCCCChhhcCCCCCCEEEccC
Q 003193 210 EAPTAISIPFRGIYELPERLGFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPSSLGCLINLRTLSLEN 289 (840)
Q Consensus 210 ~~l~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~l~~l~~L~~L~L~~ 289 (840)
.+++.|++++|.+..+|..+ .++|++|++++|.+. .+| ..+++|++|++++|.++.+|. +.+ +|++|++++
T Consensus 59 ~~L~~L~Ls~n~L~~lp~~l-~~~L~~L~Ls~N~l~-~ip----~~l~~L~~L~Ls~N~l~~ip~-l~~--~L~~L~Ls~ 129 (571)
T 3cvr_A 59 NQFSELQLNRLNLSSLPDNL-PPQITVLEITQNALI-SLP----ELPASLEYLDACDNRLSTLPE-LPA--SLKHLDVDN 129 (571)
T ss_dssp TTCSEEECCSSCCSCCCSCC-CTTCSEEECCSSCCS-CCC----CCCTTCCEEECCSSCCSCCCC-CCT--TCCEEECCS
T ss_pred CCccEEEeCCCCCCccCHhH-cCCCCEEECcCCCCc-ccc----cccCCCCEEEccCCCCCCcch-hhc--CCCEEECCC
Confidence 47889999999998888765 478999999999877 677 347899999999999998888 665 899999999
Q ss_pred CccCCcccccCCCCCCEEeecCCCCcccChhhcCCCCCCEEEccCCCCCCccCcccccCCCCCcEEEccCCcccceecCC
Q 003193 290 CLVVDVAIIGDLKKLEILSLKHSSIEQLPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGNSFTQWKVEGQ 369 (840)
Q Consensus 290 ~~~~~~~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~L~~~~~l~~~p~~~l~~L~~L~~L~l~~~~~~~~~~~~ 369 (840)
|.++..+. .+++|++|++++|.++.+|. .+++|++|++++ +.++.+|. ++ ++|++|++++|.+. .++.
T Consensus 130 N~l~~lp~--~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~-N~L~~lp~--l~--~~L~~L~Ls~N~L~-~lp~- 197 (571)
T 3cvr_A 130 NQLTMLPE--LPALLEYINADNNQLTMLPE---LPTSLEVLSVRN-NQLTFLPE--LP--ESLEALDVSTNLLE-SLPA- 197 (571)
T ss_dssp SCCSCCCC--CCTTCCEEECCSSCCSCCCC---CCTTCCEEECCS-SCCSCCCC--CC--TTCCEEECCSSCCS-SCCC-
T ss_pred CcCCCCCC--cCccccEEeCCCCccCcCCC---cCCCcCEEECCC-CCCCCcch--hh--CCCCEEECcCCCCC-chhh-
Confidence 99888333 68899999999999999887 678999999998 57888887 55 89999999998765 2221
Q ss_pred CCCCcc-cc-cCCCCCCeEEEecCCCCCCCCcc-cccCcceEEE
Q 003193 370 SNASLG-EL-KQLSRLTTLEVHIPDAQVMPQDL-VFVELERFRI 410 (840)
Q Consensus 370 ~~~~l~-~l-~~l~~L~~L~l~~~~~~~~~~~~-~~~~L~~L~l 410 (840)
+. .+ .....|+.|++++|.+..+|..+ .+++|+.|++
T Consensus 198 ----~~~~L~~~~~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~L 237 (571)
T 3cvr_A 198 ----VPVRNHHSEETEIFFRCRENRITHIPENILSLDPTCTIIL 237 (571)
T ss_dssp ----CC--------CCEEEECCSSCCCCCCGGGGGSCTTEEEEC
T ss_pred ----HHHhhhcccccceEEecCCCcceecCHHHhcCCCCCEEEe
Confidence 11 11 11123388999999888777643 3444444433
|
| >1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.51 E-value=1e-13 Score=141.15 Aligned_cols=148 Identities=21% Similarity=0.244 Sum_probs=130.7
Q ss_pred hccCCCcEEEeccCCcccCCcccCCCcceeEeeccCccccCCCchhhcCCCCCcEEEcCCCCCCCCChhhcCCCCCCEEE
Q 003193 207 KIDEAPTAISIPFRGIYELPERLGFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPSSLGCLINLRTLS 286 (840)
Q Consensus 207 ~~~~~l~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~l~~l~~L~~L~ 286 (840)
....+++.|++++|.+..++....+++|+.|++++|.+.. ++. +.++++|++|++++|.++.+|.... .+|++|+
T Consensus 38 ~~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~L~~N~i~~-~~~--l~~l~~L~~L~L~~N~l~~l~~~~~--~~L~~L~ 112 (263)
T 1xeu_A 38 KELSGVQNFNGDNSNIQSLAGMQFFTNLKELHLSHNQISD-LSP--LKDLTKLEELSVNRNRLKNLNGIPS--ACLSRLF 112 (263)
T ss_dssp HHHTTCSEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCC-CGG--GTTCSSCCEEECCSSCCSCCTTCCC--SSCCEEE
T ss_pred hhcCcCcEEECcCCCcccchHHhhCCCCCEEECCCCccCC-Chh--hccCCCCCEEECCCCccCCcCcccc--CcccEEE
Confidence 4567899999999999999865689999999999998774 444 6899999999999999999876443 9999999
Q ss_pred ccCCccCCcccccCCCCCCEEeecCCCCcccChhhcCCCCCCEEEccCCCCCCccCcccccCCCCCcEEEccCCccc
Q 003193 287 LENCLVVDVAIIGDLKKLEILSLKHSSIEQLPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGNSFTQ 363 (840)
Q Consensus 287 L~~~~~~~~~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~L~~~~~l~~~p~~~l~~L~~L~~L~l~~~~~~ 363 (840)
+++|.++.++.++++++|++|++++|+++.+| .++.+++|++|++++ +.+..++ .+..+++|+.|++++|.+.
T Consensus 113 L~~N~l~~~~~l~~l~~L~~L~Ls~N~i~~~~-~l~~l~~L~~L~L~~-N~i~~~~--~l~~l~~L~~L~l~~N~~~ 185 (263)
T 1xeu_A 113 LDNNELRDTDSLIHLKNLEILSIRNNKLKSIV-MLGFLSKLEVLDLHG-NEITNTG--GLTRLKKVNWIDLTGQKCV 185 (263)
T ss_dssp CCSSCCSBSGGGTTCTTCCEEECTTSCCCBCG-GGGGCTTCCEEECTT-SCCCBCT--TSTTCCCCCEEEEEEEEEE
T ss_pred ccCCccCCChhhcCcccccEEECCCCcCCCCh-HHccCCCCCEEECCC-CcCcchH--HhccCCCCCEEeCCCCccc
Confidence 99999999778999999999999999999997 699999999999999 6777773 3899999999999998654
|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.51 E-value=6.3e-14 Score=150.26 Aligned_cols=154 Identities=18% Similarity=0.274 Sum_probs=83.4
Q ss_pred eeEeeccCccccCCCchhhcCCCCCcEEEcCCCCCCCCChh-hc-CCCCCCEEEccCCccCC--cccccCCCCCCEEeec
Q 003193 235 KLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPSS-LG-CLINLRTLSLENCLVVD--VAIIGDLKKLEILSLK 310 (840)
Q Consensus 235 ~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~-l~-~l~~L~~L~L~~~~~~~--~~~i~~L~~L~~L~l~ 310 (840)
+++++.++.+. .+|..+ ...+++|++++|.++.++.. +. ++++|++|+|++|.+.. +..++++++|++|+++
T Consensus 21 ~~l~c~~~~l~-~iP~~~---~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls 96 (361)
T 2xot_A 21 NILSCSKQQLP-NVPQSL---PSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLS 96 (361)
T ss_dssp TEEECCSSCCS-SCCSSC---CTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CEEEeCCCCcC-ccCccC---CCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECC
Confidence 34555555443 345433 23456666666666655433 33 56666666666666655 3456666666666666
Q ss_pred CCCCcccCh-hhcCCCCCCEEEccCCCCCCccCcccccCCCCCcEEEccCCcccceecCCCCCCcccccCCCCCCeEEEe
Q 003193 311 HSSIEQLPR-EIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGNSFTQWKVEGQSNASLGELKQLSRLTTLEVH 389 (840)
Q Consensus 311 ~~~l~~lp~-~i~~L~~L~~L~L~~~~~l~~~p~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~l~~L~~L~l~ 389 (840)
+|+++.+|. .+..+++|++|++++ +.+..+++..+..+++|++|++++|.+..... ..+..+..+++|+.|+++
T Consensus 97 ~N~l~~~~~~~~~~l~~L~~L~L~~-N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~----~~~~~~~~l~~L~~L~L~ 171 (361)
T 2xot_A 97 SNHLHTLDEFLFSDLQALEVLLLYN-NHIVVVDRNAFEDMAQLQKLYLSQNQISRFPV----ELIKDGNKLPKLMLLDLS 171 (361)
T ss_dssp SSCCCEECTTTTTTCTTCCEEECCS-SCCCEECTTTTTTCTTCCEEECCSSCCCSCCG----GGTC----CTTCCEEECC
T ss_pred CCcCCcCCHHHhCCCcCCCEEECCC-CcccEECHHHhCCcccCCEEECCCCcCCeeCH----HHhcCcccCCcCCEEECC
Confidence 666665554 355666666666666 45555554446666666666666665432111 111112445666666666
Q ss_pred cCCCCCCC
Q 003193 390 IPDAQVMP 397 (840)
Q Consensus 390 ~~~~~~~~ 397 (840)
+|.+..++
T Consensus 172 ~N~l~~l~ 179 (361)
T 2xot_A 172 SNKLKKLP 179 (361)
T ss_dssp SSCCCCCC
T ss_pred CCCCCccC
Confidence 66665554
|
| >2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.50 E-value=1.5e-13 Score=135.93 Aligned_cols=148 Identities=18% Similarity=0.217 Sum_probs=121.6
Q ss_pred eeEeeccCccccCCCchhhcCCCCCcEEEcCCCCCCCCC--hhhcCCCCCCEEEccCCccCC--cccccCCCCCCEEeec
Q 003193 235 KLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLP--SSLGCLINLRTLSLENCLVVD--VAIIGDLKKLEILSLK 310 (840)
Q Consensus 235 ~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp--~~l~~l~~L~~L~L~~~~~~~--~~~i~~L~~L~~L~l~ 310 (840)
+++++++|.+. .+|..+ ...+++|++++|.++.++ ..+.++++|++|++++|.++. +..++++++|++|+++
T Consensus 14 ~~l~~s~n~l~-~iP~~~---~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls 89 (220)
T 2v70_A 14 TTVDCSNQKLN-KIPEHI---PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLT 89 (220)
T ss_dssp TEEECCSSCCS-SCCSCC---CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CEeEeCCCCcc-cCccCC---CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECC
Confidence 47888888765 577654 346789999999999773 348899999999999999988 4579999999999999
Q ss_pred CCCCcccChh-hcCCCCCCEEEccCCCCCCccCcccccCCCCCcEEEccCCcccceecCCCCCCcccccCCCCCCeEEEe
Q 003193 311 HSSIEQLPRE-IGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGNSFTQWKVEGQSNASLGELKQLSRLTTLEVH 389 (840)
Q Consensus 311 ~~~l~~lp~~-i~~L~~L~~L~L~~~~~l~~~p~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~l~~L~~L~l~ 389 (840)
+|.++.+|.. +..+++|++|++++ +.+..+++..+..+++|++|++++|.+....+ ..+..+++|+.|+++
T Consensus 90 ~N~l~~~~~~~~~~l~~L~~L~Ls~-N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-------~~~~~l~~L~~L~L~ 161 (220)
T 2v70_A 90 SNRLENVQHKMFKGLESLKTLMLRS-NRITCVGNDSFIGLSSVRLLSLYDNQITTVAP-------GAFDTLHSLSTLNLL 161 (220)
T ss_dssp SSCCCCCCGGGGTTCSSCCEEECTT-SCCCCBCTTSSTTCTTCSEEECTTSCCCCBCT-------TTTTTCTTCCEEECC
T ss_pred CCccCccCHhHhcCCcCCCEEECCC-CcCCeECHhHcCCCccCCEEECCCCcCCEECH-------HHhcCCCCCCEEEec
Confidence 9999988765 88999999999999 67888866668999999999999997764322 566778899999998
Q ss_pred cCCCC
Q 003193 390 IPDAQ 394 (840)
Q Consensus 390 ~~~~~ 394 (840)
+|.+.
T Consensus 162 ~N~l~ 166 (220)
T 2v70_A 162 ANPFN 166 (220)
T ss_dssp SCCEE
T ss_pred CcCCc
Confidence 87643
|
| >3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} | Back alignment and structure |
|---|
Probab=99.49 E-value=2.6e-13 Score=135.07 Aligned_cols=148 Identities=24% Similarity=0.283 Sum_probs=122.1
Q ss_pred ceeEeeccCccccCCCchhhcCCCCCcEEEcCCCCCCCC-ChhhcCCCCCCEEEccCCccCC-c-ccccCCCCCCEEeec
Q 003193 234 LKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSL-PSSLGCLINLRTLSLENCLVVD-V-AIIGDLKKLEILSLK 310 (840)
Q Consensus 234 L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~l-p~~l~~l~~L~~L~L~~~~~~~-~-~~i~~L~~L~~L~l~ 310 (840)
.+.+++.++.+. .+|..+ .++|++|++++|.++.+ |..+.++++|++|++++|.+.. + ..++++++|++|+++
T Consensus 21 ~~~v~c~~~~l~-~ip~~~---~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls 96 (229)
T 3e6j_A 21 GTTVDCRSKRHA-SVPAGI---PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLG 96 (229)
T ss_dssp TTEEECTTSCCS-SCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCEeEccCCCcC-ccCCCC---CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECC
Confidence 455777666654 677654 37899999999999977 6778999999999999999988 4 557899999999999
Q ss_pred CCCCcccChh-hcCCCCCCEEEccCCCCCCccCcccccCCCCCcEEEccCCcccceecCCCCCCcccccCCCCCCeEEEe
Q 003193 311 HSSIEQLPRE-IGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGNSFTQWKVEGQSNASLGELKQLSRLTTLEVH 389 (840)
Q Consensus 311 ~~~l~~lp~~-i~~L~~L~~L~L~~~~~l~~~p~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~l~~L~~L~l~ 389 (840)
+|+++.+|.. +..+++|++|++++ +.+..+|.. +.++++|++|++++|.+..... ..+..+++|+.|+++
T Consensus 97 ~N~l~~l~~~~~~~l~~L~~L~Ls~-N~l~~lp~~-~~~l~~L~~L~L~~N~l~~~~~-------~~~~~l~~L~~L~l~ 167 (229)
T 3e6j_A 97 TNQLTVLPSAVFDRLVHLKELFMCC-NKLTELPRG-IERLTHLTHLALDQNQLKSIPH-------GAFDRLSSLTHAYLF 167 (229)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCS-SCCCSCCTT-GGGCTTCSEEECCSSCCCCCCT-------TTTTTCTTCCEEECT
T ss_pred CCcCCccChhHhCcchhhCeEeccC-CcccccCcc-cccCCCCCEEECCCCcCCccCH-------HHHhCCCCCCEEEee
Confidence 9999998865 58899999999999 678899877 7999999999999997753221 456778899999998
Q ss_pred cCCCC
Q 003193 390 IPDAQ 394 (840)
Q Consensus 390 ~~~~~ 394 (840)
+|...
T Consensus 168 ~N~~~ 172 (229)
T 3e6j_A 168 GNPWD 172 (229)
T ss_dssp TSCBC
T ss_pred CCCcc
Confidence 87654
|
| >3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=99.48 E-value=2e-14 Score=154.46 Aligned_cols=154 Identities=12% Similarity=0.223 Sum_probs=82.7
Q ss_pred ccCCCcEEEeccCCcccCCc-----cc-CCC-cceeEeeccCccccCCCchhhcCC-----CCCcEEEcCCCCCCCCC-h
Q 003193 208 IDEAPTAISIPFRGIYELPE-----RL-GFL-KLKLFLFFTENLSLQIPDPFFEGM-----TELRVLDLTGFRFHSLP-S 274 (840)
Q Consensus 208 ~~~~l~~L~l~~~~~~~l~~-----~~-~~~-~L~~L~l~~~~~~~~~~~~~~~~l-----~~Lr~L~l~~~~~~~lp-~ 274 (840)
...++++|++++|.+...+. .+ .++ +|++|++++|.+....+..+ ..+ ++|++|++++|.++..+ .
T Consensus 20 ~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l-~~~l~~~~~~L~~L~Ls~n~l~~~~~~ 98 (362)
T 3goz_A 20 IPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDEL-VQILAAIPANVTSLNLSGNFLSYKSSD 98 (362)
T ss_dssp SCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHH-HHHHHTSCTTCCEEECCSSCGGGSCHH
T ss_pred CCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHH-HHHHhccCCCccEEECcCCcCChHHHH
Confidence 34456677777766655542 11 455 66666666666554433332 222 66666666666665432 2
Q ss_pred h----hcCC-CCCCEEEccCCccCC--ccc----ccC-CCCCCEEeecCCCCc-----ccChhhcCCC-CCCEEEccCCC
Q 003193 275 S----LGCL-INLRTLSLENCLVVD--VAI----IGD-LKKLEILSLKHSSIE-----QLPREIGQLT-CLKLLDLSNCS 336 (840)
Q Consensus 275 ~----l~~l-~~L~~L~L~~~~~~~--~~~----i~~-L~~L~~L~l~~~~l~-----~lp~~i~~L~-~L~~L~L~~~~ 336 (840)
. +..+ ++|++|++++|.++. +.. +.. .++|++|++++|.++ .++..+..++ +|++|++++ +
T Consensus 99 ~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~-n 177 (362)
T 3goz_A 99 ELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRG-N 177 (362)
T ss_dssp HHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTT-S
T ss_pred HHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecC-C
Confidence 2 3333 566666666666655 222 223 246666666666665 3444445554 666666666 3
Q ss_pred CCCccCccc----ccCC-CCCcEEEccCCccc
Q 003193 337 KLKEIRPNV----ISNL-TRLEELYMGNSFTQ 363 (840)
Q Consensus 337 ~l~~~p~~~----l~~L-~~L~~L~l~~~~~~ 363 (840)
.++..+... +... ++|++|++++|.+.
T Consensus 178 ~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~ 209 (362)
T 3goz_A 178 NLASKNCAELAKFLASIPASVTSLDLSANLLG 209 (362)
T ss_dssp CGGGSCHHHHHHHHHTSCTTCCEEECTTSCGG
T ss_pred CCchhhHHHHHHHHHhCCCCCCEEECCCCCCC
Confidence 444443321 2333 46666666666543
|
| >3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} | Back alignment and structure |
|---|
Probab=99.47 E-value=5.1e-13 Score=149.98 Aligned_cols=168 Identities=18% Similarity=0.209 Sum_probs=139.0
Q ss_pred cchhhhhhccCCCcEEEeccCCcccCCcccCCCcceeEeeccCccccCCCchhhcCCCCCcEEEcCCCCCCCCChhhcCC
Q 003193 200 DLKEELDKIDEAPTAISIPFRGIYELPERLGFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPSSLGCL 279 (840)
Q Consensus 200 ~~~~~~~~~~~~l~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~l~~l 279 (840)
.+..+|....++++.|++++|.+..+| ..+++|++|++++|.+.. +|. + .+ +|++|++++|.++.+|. .+
T Consensus 70 ~L~~lp~~l~~~L~~L~Ls~N~l~~ip--~~l~~L~~L~Ls~N~l~~-ip~-l-~~--~L~~L~Ls~N~l~~lp~---~l 139 (571)
T 3cvr_A 70 NLSSLPDNLPPQITVLEITQNALISLP--ELPASLEYLDACDNRLST-LPE-L-PA--SLKHLDVDNNQLTMLPE---LP 139 (571)
T ss_dssp CCSCCCSCCCTTCSEEECCSSCCSCCC--CCCTTCCEEECCSSCCSC-CCC-C-CT--TCCEEECCSSCCSCCCC---CC
T ss_pred CCCccCHhHcCCCCEEECcCCCCcccc--cccCCCCEEEccCCCCCC-cch-h-hc--CCCEEECCCCcCCCCCC---cC
Confidence 344456555688999999999999998 457999999999999875 777 4 44 99999999999999987 68
Q ss_pred CCCCEEEccCCccCCcccccCCCCCCEEeecCCCCcccChhhcCCCCCCEEEccCCCCCCccCcccccCCCCC-------
Q 003193 280 INLRTLSLENCLVVDVAIIGDLKKLEILSLKHSSIEQLPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRL------- 352 (840)
Q Consensus 280 ~~L~~L~L~~~~~~~~~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~L~~~~~l~~~p~~~l~~L~~L------- 352 (840)
++|++|++++|.++..+. .+++|++|++++|.++.+|. +. ++|++|++++ +.+..+|. +.. +|
T Consensus 140 ~~L~~L~Ls~N~l~~lp~--~l~~L~~L~Ls~N~L~~lp~-l~--~~L~~L~Ls~-N~L~~lp~--~~~--~L~~~~~~L 209 (571)
T 3cvr_A 140 ALLEYINADNNQLTMLPE--LPTSLEVLSVRNNQLTFLPE-LP--ESLEALDVST-NLLESLPA--VPV--RNHHSEETE 209 (571)
T ss_dssp TTCCEEECCSSCCSCCCC--CCTTCCEEECCSSCCSCCCC-CC--TTCCEEECCS-SCCSSCCC--CC----------CC
T ss_pred ccccEEeCCCCccCcCCC--cCCCcCEEECCCCCCCCcch-hh--CCCCEEECcC-CCCCchhh--HHH--hhhcccccc
Confidence 999999999999998333 68899999999999999998 66 9999999999 68888887 444 77
Q ss_pred cEEEccCCcccceecCCCCCCcccccCCCCCCeEEEecCCCCC
Q 003193 353 EELYMGNSFTQWKVEGQSNASLGELKQLSRLTTLEVHIPDAQV 395 (840)
Q Consensus 353 ~~L~l~~~~~~~~~~~~~~~~l~~l~~l~~L~~L~l~~~~~~~ 395 (840)
+.|++++|.+.. ....+..+++|+.|++++|.+..
T Consensus 210 ~~L~Ls~N~l~~--------lp~~l~~l~~L~~L~L~~N~l~~ 244 (571)
T 3cvr_A 210 IFFRCRENRITH--------IPENILSLDPTCTIILEDNPLSS 244 (571)
T ss_dssp EEEECCSSCCCC--------CCGGGGGSCTTEEEECCSSSCCH
T ss_pred eEEecCCCccee--------cCHHHhcCCCCCEEEeeCCcCCC
Confidence 999999998752 22456678999999999998753
|
| >2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A | Back alignment and structure |
|---|
Probab=99.46 E-value=2.8e-13 Score=127.83 Aligned_cols=138 Identities=27% Similarity=0.250 Sum_probs=87.5
Q ss_pred CCCCcEEEcCCCCCC--CCChhhcCCCCCCEEEccCCccCCcccccCCCCCCEEeecCCCCcc-cChhhcCCCCCCEEEc
Q 003193 256 MTELRVLDLTGFRFH--SLPSSLGCLINLRTLSLENCLVVDVAIIGDLKKLEILSLKHSSIEQ-LPREIGQLTCLKLLDL 332 (840)
Q Consensus 256 l~~Lr~L~l~~~~~~--~lp~~l~~l~~L~~L~L~~~~~~~~~~i~~L~~L~~L~l~~~~l~~-lp~~i~~L~~L~~L~L 332 (840)
.++|++|++++|.++ .+|..+..+++|++|++++|.+.....++.+++|++|++++|.++. +|..+.++++|++|++
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 102 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISVSNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNL 102 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCCSSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEEC
T ss_pred cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCChhhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEec
Confidence 356777777777766 6666667777777777777776666666677777777777777765 5666666777777777
Q ss_pred cCCCCCCccCc-ccccCCCCCcEEEccCCcccceecCCCCCCcccccCCCCCCeEEEecCCCCCCCC
Q 003193 333 SNCSKLKEIRP-NVISNLTRLEELYMGNSFTQWKVEGQSNASLGELKQLSRLTTLEVHIPDAQVMPQ 398 (840)
Q Consensus 333 ~~~~~l~~~p~-~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~l~~L~~L~l~~~~~~~~~~ 398 (840)
++ +.+..+|. ..++.+++|++|++++|.+..... .....+..+++|+.|+++.+.....|.
T Consensus 103 s~-N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~----~~~~~~~~l~~L~~L~l~~n~~~~~~~ 164 (168)
T 2ell_A 103 SG-NKLKDISTLEPLKKLECLKSLDLFNCEVTNLND----YRESVFKLLPQLTYLDGYDREDQEAPD 164 (168)
T ss_dssp BS-SSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTT----HHHHHHTTCSSCCEETTEETTSCBCCS
T ss_pred cC-CccCcchhHHHHhcCCCCCEEEeeCCcCcchHH----HHHHHHHhCccCcEecCCCCChhhccc
Confidence 77 45666542 236677777777777765432100 001245566777777777766655554
|
| >3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=99.46 E-value=1.1e-14 Score=156.42 Aligned_cols=107 Identities=13% Similarity=0.126 Sum_probs=47.5
Q ss_pred CCCCCcEEEcCCCCCCCCC-----hhhcCCC-CCCEEEccCCccCC--cccccCC-----CCCCEEeecCCCCcccChh-
Q 003193 255 GMTELRVLDLTGFRFHSLP-----SSLGCLI-NLRTLSLENCLVVD--VAIIGDL-----KKLEILSLKHSSIEQLPRE- 320 (840)
Q Consensus 255 ~l~~Lr~L~l~~~~~~~lp-----~~l~~l~-~L~~L~L~~~~~~~--~~~i~~L-----~~L~~L~l~~~~l~~lp~~- 320 (840)
..++|++|++++|.++..+ ..+.+++ +|++|++++|.+.. +..++.+ ++|++|++++|.++..+..
T Consensus 20 ~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~ 99 (362)
T 3goz_A 20 IPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDE 99 (362)
T ss_dssp SCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHH
T ss_pred CCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHH
Confidence 3334555555555554433 3444444 45555555555444 2333332 5555555555555433221
Q ss_pred ----hcCC-CCCCEEEccCCCCCCccCcccc----cC-CCCCcEEEccCCcc
Q 003193 321 ----IGQL-TCLKLLDLSNCSKLKEIRPNVI----SN-LTRLEELYMGNSFT 362 (840)
Q Consensus 321 ----i~~L-~~L~~L~L~~~~~l~~~p~~~l----~~-L~~L~~L~l~~~~~ 362 (840)
+..+ ++|++|++++ +.++..+...+ .. .++|++|++++|.+
T Consensus 100 l~~~l~~~~~~L~~L~Ls~-N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l 150 (362)
T 3goz_A 100 LVKTLAAIPFTITVLDLGW-NDFSSKSSSEFKQAFSNLPASITSLNLRGNDL 150 (362)
T ss_dssp HHHHHHTSCTTCCEEECCS-SCGGGSCHHHHHHHHTTSCTTCCEEECTTSCG
T ss_pred HHHHHHhCCCCccEEECcC-CcCCcHHHHHHHHHHHhCCCceeEEEccCCcC
Confidence 2333 4555555555 23444333221 12 13555555555543
|
| >2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A | Back alignment and structure |
|---|
Probab=99.45 E-value=1.1e-14 Score=157.99 Aligned_cols=167 Identities=13% Similarity=0.114 Sum_probs=104.6
Q ss_pred ccCCccc-CCCcceeEeeccCccccCCCch---hhcCCCCCcEEEcCCCCCCC----CChhh-------cCCCCCCEEEc
Q 003193 223 YELPERL-GFLKLKLFLFFTENLSLQIPDP---FFEGMTELRVLDLTGFRFHS----LPSSL-------GCLINLRTLSL 287 (840)
Q Consensus 223 ~~l~~~~-~~~~L~~L~l~~~~~~~~~~~~---~~~~l~~Lr~L~l~~~~~~~----lp~~l-------~~l~~L~~L~L 287 (840)
..++..+ .+++|++|++++|.+....+.. .+..+++|++|++++|.+.. +|..+ ..+++|++|+|
T Consensus 22 ~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~L 101 (386)
T 2ca6_A 22 KSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRL 101 (386)
T ss_dssp HTTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEEC
T ss_pred HHHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEEC
Confidence 3444443 5777888888887765432222 24577888888888875543 34444 67788888888
Q ss_pred cCCccCC------cccccCCCCCCEEeecCCCCc-----ccChhhcCC---------CCCCEEEccCCCCCC--ccCc--
Q 003193 288 ENCLVVD------VAIIGDLKKLEILSLKHSSIE-----QLPREIGQL---------TCLKLLDLSNCSKLK--EIRP-- 343 (840)
Q Consensus 288 ~~~~~~~------~~~i~~L~~L~~L~l~~~~l~-----~lp~~i~~L---------~~L~~L~L~~~~~l~--~~p~-- 343 (840)
++|.+.. +..+.++++|++|++++|.++ .++..+..+ ++|++|++++| .+. .++.
T Consensus 102 s~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n-~l~~~~~~~l~ 180 (386)
T 2ca6_A 102 SDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRN-RLENGSMKEWA 180 (386)
T ss_dssp CSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSS-CCTGGGHHHHH
T ss_pred CCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCC-CCCcHHHHHHH
Confidence 8887765 346677888888888888776 233334444 78888888874 443 2331
Q ss_pred ccccCCCCCcEEEccCCcccceecCCCCCCcc-cccCCCCCCeEEEecCCC
Q 003193 344 NVISNLTRLEELYMGNSFTQWKVEGQSNASLG-ELKQLSRLTTLEVHIPDA 393 (840)
Q Consensus 344 ~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~l~-~l~~l~~L~~L~l~~~~~ 393 (840)
..+..+++|++|++++|.+..... ...+. .+..+++|+.|++++|.+
T Consensus 181 ~~l~~~~~L~~L~L~~n~l~~~g~---~~l~~~~l~~~~~L~~L~Ls~n~l 228 (386)
T 2ca6_A 181 KTFQSHRLLHTVKMVQNGIRPEGI---EHLLLEGLAYCQELKVLDLQDNTF 228 (386)
T ss_dssp HHHHHCTTCCEEECCSSCCCHHHH---HHHHHTTGGGCTTCCEEECCSSCC
T ss_pred HHHHhCCCcCEEECcCCCCCHhHH---HHHHHHHhhcCCCccEEECcCCCC
Confidence 125667788888888776531100 00112 556677777777777665
|
| >2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A | Back alignment and structure |
|---|
Probab=99.45 E-value=3.3e-13 Score=127.36 Aligned_cols=132 Identities=19% Similarity=0.170 Sum_probs=83.0
Q ss_pred ccCCCcEEEeccCCcc--cCCccc-CCCcceeEeeccCccccCCCchhhcCCCCCcEEEcCCCCCCC-CChhhcCCCCCC
Q 003193 208 IDEAPTAISIPFRGIY--ELPERL-GFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHS-LPSSLGCLINLR 283 (840)
Q Consensus 208 ~~~~l~~L~l~~~~~~--~l~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~-lp~~l~~l~~L~ 283 (840)
.++++++|++++|.+. .+|..+ .+++|++|++++|.+... ..+..+++|++|++++|.++. +|..+..+++|+
T Consensus 22 ~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~---~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 98 (168)
T 2ell_A 22 TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV---SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLT 98 (168)
T ss_dssp CTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC---SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCC
T ss_pred CcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh---hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCC
Confidence 4466777777777775 666553 566677777766665432 234666667777777776665 555555666677
Q ss_pred EEEccCCccCC-c--ccccCCCCCCEEeecCCCCcccCh----hhcCCCCCCEEEccCCCCCCccCc
Q 003193 284 TLSLENCLVVD-V--AIIGDLKKLEILSLKHSSIEQLPR----EIGQLTCLKLLDLSNCSKLKEIRP 343 (840)
Q Consensus 284 ~L~L~~~~~~~-~--~~i~~L~~L~~L~l~~~~l~~lp~----~i~~L~~L~~L~L~~~~~l~~~p~ 343 (840)
+|++++|.++. + ..++++++|++|++++|.++.+|. .+..+++|++|++++| .+.++|.
T Consensus 99 ~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n-~~~~~~~ 164 (168)
T 2ell_A 99 HLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDR-EDQEAPD 164 (168)
T ss_dssp EEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEET-TSCBCCS
T ss_pred EEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCC-Chhhccc
Confidence 77776666665 3 456666666666666666666654 5566666666666663 4444443
|
| >2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A | Back alignment and structure |
|---|
Probab=99.43 E-value=1.9e-13 Score=126.20 Aligned_cols=102 Identities=26% Similarity=0.327 Sum_probs=43.7
Q ss_pred cCCCCCcEEEcCCCCCCCCChhhcCCCCCCEEEccCCccCC--cccccCCCCCCEEeecCCCCcccC--hhhcCCCCCCE
Q 003193 254 EGMTELRVLDLTGFRFHSLPSSLGCLINLRTLSLENCLVVD--VAIIGDLKKLEILSLKHSSIEQLP--REIGQLTCLKL 329 (840)
Q Consensus 254 ~~l~~Lr~L~l~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~--~~~i~~L~~L~~L~l~~~~l~~lp--~~i~~L~~L~~ 329 (840)
..+++|++|++++|.++.+ ..++.+++|++|++++|.+.. |..++++++|++|++++|.++.+| ..++.+++|++
T Consensus 39 ~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~ 117 (149)
T 2je0_A 39 DEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKS 117 (149)
T ss_dssp TTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCE
T ss_pred hhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCE
Confidence 3444444444444444443 334444444444444444443 222333444444444444444432 34444444444
Q ss_pred EEccCCCCCCccCc---ccccCCCCCcEEEc
Q 003193 330 LDLSNCSKLKEIRP---NVISNLTRLEELYM 357 (840)
Q Consensus 330 L~L~~~~~l~~~p~---~~l~~L~~L~~L~l 357 (840)
|++++ +.+..+|. ..++.+++|++|++
T Consensus 118 L~l~~-N~l~~~~~~~~~~~~~l~~L~~L~l 147 (149)
T 2je0_A 118 LDLFN-CEVTNLNDYRENVFKLLPQLTYLDG 147 (149)
T ss_dssp EECTT-CGGGGSTTHHHHHHHHCTTCCEETT
T ss_pred EeCcC-CcccchHHHHHHHHHHCCCcccccC
Confidence 44444 23333333 22344444444443
|
| >2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.41 E-value=1.7e-12 Score=125.18 Aligned_cols=122 Identities=20% Similarity=0.320 Sum_probs=96.0
Q ss_pred eEeeccCccccCCCchhhcCCCCCcEEEcCCCCCCCCChhhcCCCCCCEEEccCCccCC--cccccCCCCCCEEeecCCC
Q 003193 236 LFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPSSLGCLINLRTLSLENCLVVD--VAIIGDLKKLEILSLKHSS 313 (840)
Q Consensus 236 ~L~l~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~--~~~i~~L~~L~~L~l~~~~ 313 (840)
+++++++.+. .+|..+ .++|++|++++|.++.+|..+.++++|++|++++|.++. +..+.++++|++|++++|.
T Consensus 14 ~l~~~~~~l~-~ip~~~---~~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~ 89 (193)
T 2wfh_A 14 VVRCSNKGLK-VLPKGI---PRDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNR 89 (193)
T ss_dssp EEECTTSCCS-SCCSCC---CTTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred EEEcCCCCCC-cCCCCC---CCCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCc
Confidence 4455555443 455543 247888888888888888888888889999998888887 4568888889999998888
Q ss_pred CcccCh-hhcCCCCCCEEEccCCCCCCccCcccccCCCCCcEEEccCCcc
Q 003193 314 IEQLPR-EIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGNSFT 362 (840)
Q Consensus 314 l~~lp~-~i~~L~~L~~L~L~~~~~l~~~p~~~l~~L~~L~~L~l~~~~~ 362 (840)
++.+|. .+..+++|++|++++ +.+..+|...+..+++|+.|++++|.+
T Consensus 90 l~~i~~~~f~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~L~~N~~ 138 (193)
T 2wfh_A 90 LRCIPPRTFDGLKSLRLLSLHG-NDISVVPEGAFNDLSALSHLAIGANPL 138 (193)
T ss_dssp CCBCCTTTTTTCTTCCEEECCS-SCCCBCCTTTTTTCTTCCEEECCSSCE
T ss_pred cCEeCHHHhCCCCCCCEEECCC-CCCCeeChhhhhcCccccEEEeCCCCe
Confidence 888765 578888999999988 678888877778888888888888754
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=99.40 E-value=2.6e-15 Score=169.77 Aligned_cols=190 Identities=20% Similarity=0.236 Sum_probs=121.4
Q ss_pred cCCCcEEEeccCCcccCCccc-CCCcceeEeeccCc-------------cccCCCchhhcCCCCCcEEE-cCCCCCCCCC
Q 003193 209 DEAPTAISIPFRGIYELPERL-GFLKLKLFLFFTEN-------------LSLQIPDPFFEGMTELRVLD-LTGFRFHSLP 273 (840)
Q Consensus 209 ~~~l~~L~l~~~~~~~l~~~~-~~~~L~~L~l~~~~-------------~~~~~~~~~~~~l~~Lr~L~-l~~~~~~~lp 273 (840)
.+.+++|+++.|.+..+|..+ .+++|+.|++.+|. ..+. ++..++.+++|+.|+ ++.+.+..++
T Consensus 348 ~~~L~~L~Ls~n~L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~-~~~~l~~l~~L~~L~~l~~n~~~~L~ 426 (567)
T 1dce_A 348 DEQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLY-EKETLQYFSTLKAVDPMRAAYLDDLR 426 (567)
T ss_dssp TTTSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGG-HHHHHHHHHHHHHHCGGGHHHHHHHH
T ss_pred CccceeccCChhhHHhhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccC-CHHHHHHHHhcccCcchhhcccchhh
Confidence 345667777777777777665 57777777775543 2222 223335566666666 4444332222
Q ss_pred h------hhcC--CCCCCEEEccCCccCCcccccCCCCCCEEeecCCCCcccChhhcCCCCCCEEEccCCCCCCccCccc
Q 003193 274 S------SLGC--LINLRTLSLENCLVVDVAIIGDLKKLEILSLKHSSIEQLPREIGQLTCLKLLDLSNCSKLKEIRPNV 345 (840)
Q Consensus 274 ~------~l~~--l~~L~~L~L~~~~~~~~~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~L~~~~~l~~~p~~~ 345 (840)
. .+.. ...|++|++++|.++..+.++++++|++|++++|.++.+|..++++++|++|++++ +.++.+| .
T Consensus 427 ~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~lp~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~-N~l~~lp-~- 503 (567)
T 1dce_A 427 SKFLLENSVLKMEYADVRVLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASD-NALENVD-G- 503 (567)
T ss_dssp HHHHHHHHHHHHHHTTCSEEECTTSCCSSCCCGGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCS-SCCCCCG-G-
T ss_pred hhhhhcccccccCccCceEEEecCCCCCCCcCccccccCcEeecCcccccccchhhhcCCCCCEEECCC-CCCCCCc-c-
Confidence 1 1111 12577888888877773347888888888888888888888888888888888887 5677776 3
Q ss_pred ccCCCCCcEEEccCCcccceecCCCCCCcccccCCCCCCeEEEecCCCCCCCCcc-----cccCcceE
Q 003193 346 ISNLTRLEELYMGNSFTQWKVEGQSNASLGELKQLSRLTTLEVHIPDAQVMPQDL-----VFVELERF 408 (840)
Q Consensus 346 l~~L~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~l~~L~~L~l~~~~~~~~~~~~-----~~~~L~~L 408 (840)
++++++|++|++++|.+.... .+..+..+++|+.|++++|.+...+... .+++|+.|
T Consensus 504 l~~l~~L~~L~Ls~N~l~~~~------~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L 565 (567)
T 1dce_A 504 VANLPRLQELLLCNNRLQQSA------AIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSI 565 (567)
T ss_dssp GTTCSSCCEEECCSSCCCSSS------TTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEE
T ss_pred cCCCCCCcEEECCCCCCCCCC------CcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCcc
Confidence 778888888888877654321 0356677778888888887776665542 24555554
|
| >2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A | Back alignment and structure |
|---|
Probab=99.39 E-value=8.4e-13 Score=121.77 Aligned_cols=124 Identities=19% Similarity=0.175 Sum_probs=110.3
Q ss_pred ccCCCcEEEeccCCcc--cCCccc-CCCcceeEeeccCccccCCCchhhcCCCCCcEEEcCCCCCCC-CChhhcCCCCCC
Q 003193 208 IDEAPTAISIPFRGIY--ELPERL-GFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHS-LPSSLGCLINLR 283 (840)
Q Consensus 208 ~~~~l~~L~l~~~~~~--~l~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~-lp~~l~~l~~L~ 283 (840)
.+.++++|++++|.+. .+|..+ .+++|+.|++++|.+... ..+..+++|++|++++|.++. +|..++.+++|+
T Consensus 15 ~~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~ 91 (149)
T 2je0_A 15 TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI---ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLT 91 (149)
T ss_dssp CGGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC---TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCC
T ss_pred CCccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc---hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCC
Confidence 4567999999999997 788765 799999999999987654 446899999999999999997 788888899999
Q ss_pred EEEccCCccCC-c--ccccCCCCCCEEeecCCCCcccCh----hhcCCCCCCEEEccC
Q 003193 284 TLSLENCLVVD-V--AIIGDLKKLEILSLKHSSIEQLPR----EIGQLTCLKLLDLSN 334 (840)
Q Consensus 284 ~L~L~~~~~~~-~--~~i~~L~~L~~L~l~~~~l~~lp~----~i~~L~~L~~L~L~~ 334 (840)
+|++++|.++. + ..++.+++|++|++++|.++.+|. .++.+++|++|++++
T Consensus 92 ~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 92 HLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp EEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred EEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence 99999999998 4 889999999999999999998886 689999999999863
|
| >1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 | Back alignment and structure |
|---|
Probab=99.38 E-value=2.1e-12 Score=124.62 Aligned_cols=104 Identities=19% Similarity=0.257 Sum_probs=58.1
Q ss_pred CCcEEEcCCCCCCCCChh--hcCCCCCCEEEccCCccCC--cccccCCCCCCEEeecCCCCcccChh-hcCCCCCCEEEc
Q 003193 258 ELRVLDLTGFRFHSLPSS--LGCLINLRTLSLENCLVVD--VAIIGDLKKLEILSLKHSSIEQLPRE-IGQLTCLKLLDL 332 (840)
Q Consensus 258 ~Lr~L~l~~~~~~~lp~~--l~~l~~L~~L~L~~~~~~~--~~~i~~L~~L~~L~l~~~~l~~lp~~-i~~L~~L~~L~L 332 (840)
+|++|++++|.++.++.. ++.+++|++|++++|.++. |..++++++|++|++++|+++.+|.. +..+++|++|++
T Consensus 30 ~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 109 (192)
T 1w8a_A 30 HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNL 109 (192)
T ss_dssp TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEEC
T ss_pred CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEEC
Confidence 555556666555555432 5555666666666665555 34555566666666666655555433 555666666666
Q ss_pred cCCCCCCccCcccccCCCCCcEEEccCCcc
Q 003193 333 SNCSKLKEIRPNVISNLTRLEELYMGNSFT 362 (840)
Q Consensus 333 ~~~~~l~~~p~~~l~~L~~L~~L~l~~~~~ 362 (840)
++ +.+..+++..++.+++|++|++++|.+
T Consensus 110 ~~-N~l~~~~~~~~~~l~~L~~L~L~~N~l 138 (192)
T 1w8a_A 110 YD-NQISCVMPGSFEHLNSLTSLNLASNPF 138 (192)
T ss_dssp CS-SCCCEECTTSSTTCTTCCEEECTTCCB
T ss_pred CC-CcCCeeCHHHhhcCCCCCEEEeCCCCc
Confidence 65 345444444455566666666665543
|
| >1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 | Back alignment and structure |
|---|
Probab=99.37 E-value=3.1e-12 Score=123.35 Aligned_cols=125 Identities=22% Similarity=0.343 Sum_probs=109.2
Q ss_pred cEEEcCCCCCCCCChhhcCCCCCCEEEccCCccCC-cc--cccCCCCCCEEeecCCCCccc-ChhhcCCCCCCEEEccCC
Q 003193 260 RVLDLTGFRFHSLPSSLGCLINLRTLSLENCLVVD-VA--IIGDLKKLEILSLKHSSIEQL-PREIGQLTCLKLLDLSNC 335 (840)
Q Consensus 260 r~L~l~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~-~~--~i~~L~~L~~L~l~~~~l~~l-p~~i~~L~~L~~L~L~~~ 335 (840)
++++++++.++.+|..+.. +|++|++++|.+.. +. .++++++|++|++++|.++.+ |..+..+++|++|++++
T Consensus 11 ~~l~~s~~~l~~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~- 87 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE- 87 (192)
T ss_dssp TEEECTTSCCSSCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS-
T ss_pred CEEEcCCCCcCcCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC-
Confidence 7899999999999987754 99999999999988 43 389999999999999999988 67899999999999999
Q ss_pred CCCCccCcccccCCCCCcEEEccCCcccceecCCCCCCcccccCCCCCCeEEEecCCCC
Q 003193 336 SKLKEIRPNVISNLTRLEELYMGNSFTQWKVEGQSNASLGELKQLSRLTTLEVHIPDAQ 394 (840)
Q Consensus 336 ~~l~~~p~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~l~~L~~L~l~~~~~~ 394 (840)
+.+..+++..++.+++|++|++++|.+....+ ..+..+++|+.|++++|.+.
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-------~~~~~l~~L~~L~L~~N~l~ 139 (192)
T 1w8a_A 88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMP-------GSFEHLNSLTSLNLASNPFN 139 (192)
T ss_dssp CCCCEECSSSSTTCTTCCEEECCSSCCCEECT-------TSSTTCTTCCEEECTTCCBC
T ss_pred CcCCccCHHHhcCCCCCCEEECCCCcCCeeCH-------HHhhcCCCCCEEEeCCCCcc
Confidence 68888888778999999999999998765433 56777889999999988654
|
| >1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 | Back alignment and structure |
|---|
Probab=99.36 E-value=5.2e-13 Score=127.02 Aligned_cols=101 Identities=19% Similarity=0.230 Sum_probs=46.1
Q ss_pred CCcEEEcCCCCCCCCChhhcCCCCCCEEEccCCccCC-ccc-ccCCCCCCEEeecCCCCcccCh--hhcCCCCCCEEEcc
Q 003193 258 ELRVLDLTGFRFHSLPSSLGCLINLRTLSLENCLVVD-VAI-IGDLKKLEILSLKHSSIEQLPR--EIGQLTCLKLLDLS 333 (840)
Q Consensus 258 ~Lr~L~l~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~-~~~-i~~L~~L~~L~l~~~~l~~lp~--~i~~L~~L~~L~L~ 333 (840)
+|++|++++|.++.+ +.++.+++|++|++++|.++. ++. ++.+++|++|++++|.++.+|. .+..+++|++|+++
T Consensus 43 ~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~ 121 (176)
T 1a9n_A 43 QFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCIL 121 (176)
T ss_dssp CCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEECC
T ss_pred CCCEEECCCCCCCcc-cccccCCCCCEEECCCCcccccCcchhhcCCCCCEEECCCCcCCcchhhHhhhcCCCCCEEEec
Confidence 455555555544444 344444455555555544444 222 2444455555555544444443 44444455555554
Q ss_pred CCCCCCccCcc---cccCCCCCcEEEccCC
Q 003193 334 NCSKLKEIRPN---VISNLTRLEELYMGNS 360 (840)
Q Consensus 334 ~~~~l~~~p~~---~l~~L~~L~~L~l~~~ 360 (840)
+ +.+..+|.. .++.+++|+.|++++|
T Consensus 122 ~-N~i~~~~~~~~~~~~~l~~L~~Ld~~~n 150 (176)
T 1a9n_A 122 R-NPVTNKKHYRLYVIYKVPQVRVLDFQKV 150 (176)
T ss_dssp S-SGGGGSTTHHHHHHHHCTTCSEETTEEC
T ss_pred C-CCCCCcHhHHHHHHHHCCccceeCCCcC
Confidence 4 233344332 2344444444444443
|
| >4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C} | Back alignment and structure |
|---|
Probab=99.35 E-value=8.8e-13 Score=154.00 Aligned_cols=153 Identities=20% Similarity=0.216 Sum_probs=102.0
Q ss_pred cCCCcEEEeccCCcccCCccc-CCCcceeEeec-----cCccccCCCchhhcCCCCCcEEEcCCCCCCCCChhhcCCCCC
Q 003193 209 DEAPTAISIPFRGIYELPERL-GFLKLKLFLFF-----TENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPSSLGCLINL 282 (840)
Q Consensus 209 ~~~l~~L~l~~~~~~~l~~~~-~~~~L~~L~l~-----~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~l~~l~~L 282 (840)
...++++++..+.+...+... ...+|+.+.+. .|.+ .++...+..++.|++|+|++|.+..+|..+.++++|
T Consensus 172 ~~~~~~l~L~~n~~~~~~~~~l~~l~Ls~~~i~~~~~~~n~~--~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L 249 (727)
T 4b8c_D 172 TPLTPKIELFANGKDEANQALLQHKKLSQYSIDEDDDIENRM--VMPKDSKYDDQLWHALDLSNLQIFNISANIFKYDFL 249 (727)
T ss_dssp ----------------------------------------------------CCCCCCEEECTTSCCSCCCGGGGGCCSC
T ss_pred CCccceEEeeCCCCCcchhhHhhcCccCcccccCccccccce--ecChhhhccCCCCcEEECCCCCCCCCChhhcCCCCC
Confidence 456788888888876655432 33444443332 2322 255666789999999999999999999999999999
Q ss_pred CEEEccCCccCC-cccccCCCCCCEEeecCCCCcccChhhcCCCCCCEEEccCCCCCCccCcccccCCCCCcEEEccCCc
Q 003193 283 RTLSLENCLVVD-VAIIGDLKKLEILSLKHSSIEQLPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGNSF 361 (840)
Q Consensus 283 ~~L~L~~~~~~~-~~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~L~~~~~l~~~p~~~l~~L~~L~~L~l~~~~ 361 (840)
++|+|++|.++. |..++++++|++|+|++|.++.+|..+++|++|++|+|++ +.++.+|.. |+++++|++|++++|.
T Consensus 250 ~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~-N~l~~lp~~-~~~l~~L~~L~L~~N~ 327 (727)
T 4b8c_D 250 TRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYFYFFD-NMVTTLPWE-FGNLCNLQFLGVEGNP 327 (727)
T ss_dssp SCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTTCSEEECCS-SCCCCCCSS-TTSCTTCCCEECTTSC
T ss_pred CEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCCccChhhcCCCCCCEEECCC-CCCCccChh-hhcCCCccEEeCCCCc
Confidence 999999999988 8889999999999999999999999999999999999999 578899987 8999999999999998
Q ss_pred ccce
Q 003193 362 TQWK 365 (840)
Q Consensus 362 ~~~~ 365 (840)
+...
T Consensus 328 l~~~ 331 (727)
T 4b8c_D 328 LEKQ 331 (727)
T ss_dssp CCSH
T ss_pred cCCC
Confidence 7643
|
| >2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.32 E-value=1e-11 Score=119.61 Aligned_cols=124 Identities=22% Similarity=0.284 Sum_probs=107.4
Q ss_pred cEEEcCCCCCCCCChhhcCCCCCCEEEccCCccCC-cccccCCCCCCEEeecCCCCcccCh-hhcCCCCCCEEEccCCCC
Q 003193 260 RVLDLTGFRFHSLPSSLGCLINLRTLSLENCLVVD-VAIIGDLKKLEILSLKHSSIEQLPR-EIGQLTCLKLLDLSNCSK 337 (840)
Q Consensus 260 r~L~l~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~-~~~i~~L~~L~~L~l~~~~l~~lp~-~i~~L~~L~~L~L~~~~~ 337 (840)
++++++++.++.+|..+. .+|++|++++|.++. |..++++++|++|++++|.++.++. .+..+++|++|++++ +.
T Consensus 13 ~~l~~~~~~l~~ip~~~~--~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~-N~ 89 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPKGIP--RDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSY-NR 89 (193)
T ss_dssp TEEECTTSCCSSCCSCCC--TTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS-SC
T ss_pred CEEEcCCCCCCcCCCCCC--CCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCC-Cc
Confidence 689999999999998764 689999999999988 7899999999999999999998874 589999999999999 68
Q ss_pred CCccCcccccCCCCCcEEEccCCcccceecCCCCCCcccccCCCCCCeEEEecCCC
Q 003193 338 LKEIRPNVISNLTRLEELYMGNSFTQWKVEGQSNASLGELKQLSRLTTLEVHIPDA 393 (840)
Q Consensus 338 l~~~p~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~l~~L~~L~l~~~~~ 393 (840)
+..+++..++.+++|++|++++|.+..... ..+..+++|+.|++++|..
T Consensus 90 l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~-------~~~~~l~~L~~L~L~~N~~ 138 (193)
T 2wfh_A 90 LRCIPPRTFDGLKSLRLLSLHGNDISVVPE-------GAFNDLSALSHLAIGANPL 138 (193)
T ss_dssp CCBCCTTTTTTCTTCCEEECCSSCCCBCCT-------TTTTTCTTCCEEECCSSCE
T ss_pred cCEeCHHHhCCCCCCCEEECCCCCCCeeCh-------hhhhcCccccEEEeCCCCe
Confidence 889988779999999999999998763222 3466788899999987764
|
| >1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 | Back alignment and structure |
|---|
Probab=99.32 E-value=2.6e-12 Score=122.17 Aligned_cols=125 Identities=17% Similarity=0.168 Sum_probs=110.3
Q ss_pred ccCCCcEEEeccCCcccCCcccCCC-cceeEeeccCccccCCCchhhcCCCCCcEEEcCCCCCCCCChhh-cCCCCCCEE
Q 003193 208 IDEAPTAISIPFRGIYELPERLGFL-KLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPSSL-GCLINLRTL 285 (840)
Q Consensus 208 ~~~~l~~L~l~~~~~~~l~~~~~~~-~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~l-~~l~~L~~L 285 (840)
...+++.|++++|.+..++....+. +|+.|++++|.+... ..+..+++|++|++++|.++.+|+.+ ..+++|++|
T Consensus 17 ~~~~L~~L~l~~n~l~~i~~~~~~~~~L~~L~Ls~N~l~~~---~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 93 (176)
T 1a9n_A 17 NAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKL---DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTEL 93 (176)
T ss_dssp CTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEE---CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEE
T ss_pred CcCCceEEEeeCCCCchhHHhhhcCCCCCEEECCCCCCCcc---cccccCCCCCEEECCCCcccccCcchhhcCCCCCEE
Confidence 4678999999999998887655555 999999999998753 23689999999999999999988665 899999999
Q ss_pred EccCCccCC-cc--cccCCCCCCEEeecCCCCcccChh----hcCCCCCCEEEccCC
Q 003193 286 SLENCLVVD-VA--IIGDLKKLEILSLKHSSIEQLPRE----IGQLTCLKLLDLSNC 335 (840)
Q Consensus 286 ~L~~~~~~~-~~--~i~~L~~L~~L~l~~~~l~~lp~~----i~~L~~L~~L~L~~~ 335 (840)
++++|.+.. +. .++.+++|++|++++|.++.+|.. ++.+++|++|+++++
T Consensus 94 ~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n 150 (176)
T 1a9n_A 94 ILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKV 150 (176)
T ss_dssp ECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEEC
T ss_pred ECCCCcCCcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcC
Confidence 999999988 54 789999999999999999999985 899999999999985
|
| >4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C} | Back alignment and structure |
|---|
Probab=99.30 E-value=5.6e-13 Score=155.67 Aligned_cols=131 Identities=20% Similarity=0.253 Sum_probs=109.9
Q ss_pred CCCcceeEeeccCccccCCCchhhcCCCCCcEEEcCCCCCCCCChhhcCCCCCCEEEccCCccCC-cccccCCCCCCEEe
Q 003193 230 GFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPSSLGCLINLRTLSLENCLVVD-VAIIGDLKKLEILS 308 (840)
Q Consensus 230 ~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~-~~~i~~L~~L~~L~ 308 (840)
.++.|+.|++++|.+. .+|..++ ++++|++|+|++|.++.+|..|++|++|++|+|++|.++. |..+++|++|++|+
T Consensus 222 ~l~~L~~L~Ls~n~l~-~l~~~~~-~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~ 299 (727)
T 4b8c_D 222 DDQLWHALDLSNLQIF-NISANIF-KYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYFY 299 (727)
T ss_dssp CCCCCCEEECTTSCCS-CCCGGGG-GCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTTCSEEE
T ss_pred cCCCCcEEECCCCCCC-CCChhhc-CCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCCccChhhcCCCCCCEEE
Confidence 7899999999999987 7888875 7999999999999999999999999999999999999998 88999999999999
Q ss_pred ecCCCCcccChhhcCCCCCCEEEccCCCCCCccCcccccCCCC-CcEEEccCCccc
Q 003193 309 LKHSSIEQLPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTR-LEELYMGNSFTQ 363 (840)
Q Consensus 309 l~~~~l~~lp~~i~~L~~L~~L~L~~~~~l~~~p~~~l~~L~~-L~~L~l~~~~~~ 363 (840)
|++|.++.+|..++++++|++|+|++ +.+...++..+..+.. +..|++.+|.+.
T Consensus 300 L~~N~l~~lp~~~~~l~~L~~L~L~~-N~l~~~~p~~~~~~~~~~~~l~l~~N~l~ 354 (727)
T 4b8c_D 300 FFDNMVTTLPWEFGNLCNLQFLGVEG-NPLEKQFLKILTEKSVTGLIFYLRDNRPE 354 (727)
T ss_dssp CCSSCCCCCCSSTTSCTTCCCEECTT-SCCCSHHHHHHHHHHHHHHHHHHHHCCCC
T ss_pred CCCCCCCccChhhhcCCCccEEeCCC-CccCCCChHHHhhcchhhhHHhhccCccc
Confidence 99999999999999999999999999 5566554443443321 123556666543
|
| >2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.28 E-value=3.2e-11 Score=114.74 Aligned_cols=105 Identities=28% Similarity=0.434 Sum_probs=64.2
Q ss_pred CCCcEEEcCCCCCCCCCh-hhcCCCCCCEEEccCCccCC-c-ccccCCCCCCEEeecCCCCcccChh-hcCCCCCCEEEc
Q 003193 257 TELRVLDLTGFRFHSLPS-SLGCLINLRTLSLENCLVVD-V-AIIGDLKKLEILSLKHSSIEQLPRE-IGQLTCLKLLDL 332 (840)
Q Consensus 257 ~~Lr~L~l~~~~~~~lp~-~l~~l~~L~~L~L~~~~~~~-~-~~i~~L~~L~~L~l~~~~l~~lp~~-i~~L~~L~~L~L 332 (840)
++|++|++++|.++.+|. .++.+++|++|++++|.++. + ..++++++|++|++++|.++.+|.. +.++++|++|++
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l 107 (177)
T 2o6r_A 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELAL 107 (177)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEEC
Confidence 456666666666665543 34566666666666666655 2 3356666666666666666666543 456666666666
Q ss_pred cCCCCCCccCcccccCCCCCcEEEccCCcc
Q 003193 333 SNCSKLKEIRPNVISNLTRLEELYMGNSFT 362 (840)
Q Consensus 333 ~~~~~l~~~p~~~l~~L~~L~~L~l~~~~~ 362 (840)
++ +.+..+|...+..+++|++|++++|.+
T Consensus 108 ~~-N~l~~~~~~~~~~l~~L~~L~l~~N~~ 136 (177)
T 2o6r_A 108 DT-NQLKSVPDGIFDRLTSLQKIWLHTNPW 136 (177)
T ss_dssp CS-SCCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred cC-CcceEeCHHHhcCCcccCEEEecCCCe
Confidence 66 456666665556666666666666644
|
| >2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.27 E-value=3.2e-11 Score=114.73 Aligned_cols=123 Identities=23% Similarity=0.354 Sum_probs=106.1
Q ss_pred CcEEEeccCCcccCCcccCCCcceeEeeccCccccCCCchhhcCCCCCcEEEcCCCCCCCCChh-hcCCCCCCEEEccCC
Q 003193 212 PTAISIPFRGIYELPERLGFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPSS-LGCLINLRTLSLENC 290 (840)
Q Consensus 212 l~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~-l~~l~~L~~L~L~~~ 290 (840)
.+.++++++.+..+|... .++++.|++++|.+. .++...|.++++|++|++++|.++.+|.. +..+++|++|++++|
T Consensus 9 ~~~l~~~~~~l~~~p~~~-~~~l~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N 86 (177)
T 2o6r_A 9 GTEIRCNSKGLTSVPTGI-PSSATRLELESNKLQ-SLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHEN 86 (177)
T ss_dssp TTEEECCSSCCSSCCTTC-CTTCSEEECCSSCCC-CCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCEEEecCCCCccCCCCC-CCCCcEEEeCCCccc-EeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCC
Confidence 357888888888888544 478999999999876 56666778999999999999999988755 689999999999999
Q ss_pred ccCC-c-ccccCCCCCCEEeecCCCCcccChhh-cCCCCCCEEEccCCC
Q 003193 291 LVVD-V-AIIGDLKKLEILSLKHSSIEQLPREI-GQLTCLKLLDLSNCS 336 (840)
Q Consensus 291 ~~~~-~-~~i~~L~~L~~L~l~~~~l~~lp~~i-~~L~~L~~L~L~~~~ 336 (840)
.++. + ..++++++|++|++++|.++.+|..+ ..+++|++|++++|.
T Consensus 87 ~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 135 (177)
T 2o6r_A 87 KLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNP 135 (177)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred CccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCC
Confidence 9998 4 45789999999999999999998764 789999999999953
|
| >1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A | Back alignment and structure |
|---|
Probab=99.25 E-value=1.2e-13 Score=134.19 Aligned_cols=132 Identities=24% Similarity=0.318 Sum_probs=90.5
Q ss_pred hcCCCCCcEEEcCCCCCCCCChhhcCCCCCCEEEccCCccCC-cccccCCCCCCEEeecCCCCcccChhhcCCCCCCEEE
Q 003193 253 FEGMTELRVLDLTGFRFHSLPSSLGCLINLRTLSLENCLVVD-VAIIGDLKKLEILSLKHSSIEQLPREIGQLTCLKLLD 331 (840)
Q Consensus 253 ~~~l~~Lr~L~l~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~-~~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~ 331 (840)
+..+++|++|++++|.++.+| .+.++++|++|++++|.+.. |..++.+++|++|++++|+++.+| .++.+++|++|+
T Consensus 44 ~~~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~l~~l~-~~~~l~~L~~L~ 121 (198)
T 1ds9_A 44 LSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLS-GIEKLVNLRVLY 121 (198)
T ss_dssp HHHTTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEEECCCHH-HHHHHHHSSEEE
T ss_pred HhcCCCCCEEECCCCCCcccc-ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCCcCCcCC-ccccCCCCCEEE
Confidence 467778888888888877777 77778888888888887777 666666778888888888887776 577788888888
Q ss_pred ccCCCCCCccCc-ccccCCCCCcEEEccCCcccceecCC---CCCCcccccCCCCCCeEE
Q 003193 332 LSNCSKLKEIRP-NVISNLTRLEELYMGNSFTQWKVEGQ---SNASLGELKQLSRLTTLE 387 (840)
Q Consensus 332 L~~~~~l~~~p~-~~l~~L~~L~~L~l~~~~~~~~~~~~---~~~~l~~l~~l~~L~~L~ 387 (840)
+++ +.+..++. ..+..+++|++|++++|.+....+.. .......+..+++|+.|+
T Consensus 122 l~~-N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld 180 (198)
T 1ds9_A 122 MSN-NKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD 180 (198)
T ss_dssp ESE-EECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC
T ss_pred CCC-CcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC
Confidence 887 56666554 33677888888888877654322100 000012255666777665
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=99.24 E-value=2.1e-11 Score=137.72 Aligned_cols=123 Identities=20% Similarity=0.221 Sum_probs=104.8
Q ss_pred CCcEEEcCCCCCCCCChhhcCCCCCCEEEccCCccCC-cccccCCCCCCEEeecCCCCcccChhhcCCCCCCEEEccCCC
Q 003193 258 ELRVLDLTGFRFHSLPSSLGCLINLRTLSLENCLVVD-VAIIGDLKKLEILSLKHSSIEQLPREIGQLTCLKLLDLSNCS 336 (840)
Q Consensus 258 ~Lr~L~l~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~-~~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~L~~~~ 336 (840)
.|++|++++|.++.+|. ++.+++|++|++++|.++. |..++++++|++|++++|.++.+| .++++++|++|++++ +
T Consensus 442 ~L~~L~Ls~n~l~~lp~-~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp-~l~~l~~L~~L~Ls~-N 518 (567)
T 1dce_A 442 DVRVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVD-GVANLPRLQELLLCN-N 518 (567)
T ss_dssp TCSEEECTTSCCSSCCC-GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCG-GGTTCSSCCEEECCS-S
T ss_pred CceEEEecCCCCCCCcC-ccccccCcEeecCcccccccchhhhcCCCCCEEECCCCCCCCCc-ccCCCCCCcEEECCC-C
Confidence 59999999999999997 9999999999999999999 899999999999999999999999 899999999999999 6
Q ss_pred CCCcc--CcccccCCCCCcEEEccCCcccceecCCCCCCcccccCCCCCCeEEE
Q 003193 337 KLKEI--RPNVISNLTRLEELYMGNSFTQWKVEGQSNASLGELKQLSRLTTLEV 388 (840)
Q Consensus 337 ~l~~~--p~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~l~~L~~L~l 388 (840)
.+..+ |.. ++.+++|++|++++|.+....+ ....-+..+++|+.|++
T Consensus 519 ~l~~~~~p~~-l~~l~~L~~L~L~~N~l~~~~~----~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 519 RLQQSAAIQP-LVSCPRLVLLNLQGNSLCQEEG----IQERLAEMLPSVSSILT 567 (567)
T ss_dssp CCCSSSTTGG-GGGCTTCCEEECTTSGGGGSSS----CTTHHHHHCTTCSEEEC
T ss_pred CCCCCCCcHH-HhcCCCCCEEEecCCcCCCCcc----HHHHHHHHCcccCccCC
Confidence 78888 555 8999999999999998754322 11122344778888753
|
| >2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} | Back alignment and structure |
|---|
Probab=99.20 E-value=7.9e-11 Score=111.20 Aligned_cols=101 Identities=24% Similarity=0.403 Sum_probs=78.8
Q ss_pred cEEEcCCCCCCCCChhhcCCCCCCEEEccCCccCC--cccccCCCCCCEEeecCCCCcccChh-hcCCCCCCEEEccCCC
Q 003193 260 RVLDLTGFRFHSLPSSLGCLINLRTLSLENCLVVD--VAIIGDLKKLEILSLKHSSIEQLPRE-IGQLTCLKLLDLSNCS 336 (840)
Q Consensus 260 r~L~l~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~--~~~i~~L~~L~~L~l~~~~l~~lp~~-i~~L~~L~~L~L~~~~ 336 (840)
+.++++++.++.+|..+. .+|++|++++|.+.. +..++++++|++|++++|+++.+|.. +.++++|++|++++ +
T Consensus 15 ~~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~-N 91 (174)
T 2r9u_A 15 TLVNCQNIRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLND-N 91 (174)
T ss_dssp SEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS-S
T ss_pred cEEEeCCCCCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCC-C
Confidence 677888888888887664 778888888888777 45678888888888888888888765 47788888888887 6
Q ss_pred CCCccCcccccCCCCCcEEEccCCccc
Q 003193 337 KLKEIRPNVISNLTRLEELYMGNSFTQ 363 (840)
Q Consensus 337 ~l~~~p~~~l~~L~~L~~L~l~~~~~~ 363 (840)
.+..+|+..++.+++|++|++++|.+.
T Consensus 92 ~l~~l~~~~~~~l~~L~~L~L~~N~~~ 118 (174)
T 2r9u_A 92 HLKSIPRGAFDNLKSLTHIYLYNNPWD 118 (174)
T ss_dssp CCCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred ccceeCHHHhccccCCCEEEeCCCCcc
Confidence 777777766778888888888877553
|
| >3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D | Back alignment and structure |
|---|
Probab=99.19 E-value=9.7e-11 Score=110.25 Aligned_cols=102 Identities=24% Similarity=0.359 Sum_probs=81.9
Q ss_pred CcEEEcCCCCCCCCChhhcCCCCCCEEEccCCccCC--cccccCCCCCCEEeecCCCCcccChh-hcCCCCCCEEEccCC
Q 003193 259 LRVLDLTGFRFHSLPSSLGCLINLRTLSLENCLVVD--VAIIGDLKKLEILSLKHSSIEQLPRE-IGQLTCLKLLDLSNC 335 (840)
Q Consensus 259 Lr~L~l~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~--~~~i~~L~~L~~L~l~~~~l~~lp~~-i~~L~~L~~L~L~~~ 335 (840)
.++++++++.++.+|..+. .+|++|++++|.++. +..++++++|++|++++|+++.+|.. +.++++|++|++++
T Consensus 11 ~~~l~~s~n~l~~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~- 87 (170)
T 3g39_A 11 GTTVDCSGKSLASVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND- 87 (170)
T ss_dssp TTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS-
T ss_pred CCEEEeCCCCcCccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC-
Confidence 4678888888888887663 788888888888877 56688888888888888888888765 47888888888888
Q ss_pred CCCCccCcccccCCCCCcEEEccCCccc
Q 003193 336 SKLKEIRPNVISNLTRLEELYMGNSFTQ 363 (840)
Q Consensus 336 ~~l~~~p~~~l~~L~~L~~L~l~~~~~~ 363 (840)
+.+..+|+..+.++++|++|++++|.+.
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 115 (170)
T 3g39_A 88 NQLKSIPRGAFDNLKSLTHIWLLNNPWD 115 (170)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred CccCEeCHHHhcCCCCCCEEEeCCCCCC
Confidence 6788888776788888888888887553
|
| >1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A | Back alignment and structure |
|---|
Probab=99.13 E-value=1.1e-12 Score=127.39 Aligned_cols=142 Identities=20% Similarity=0.213 Sum_probs=115.4
Q ss_pred CCcEEEeccC--CcccCCccc-CCCcceeEeeccCccccCCCchhhcCCCCCcEEEcCCCCCCCCChhhcCCCCCCEEEc
Q 003193 211 APTAISIPFR--GIYELPERL-GFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPSSLGCLINLRTLSL 287 (840)
Q Consensus 211 ~l~~L~l~~~--~~~~l~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~l~~l~~L~~L~L 287 (840)
.++...+.+. .+..+|..+ .+++|++|++++|.+.. +| .+.++++|++|++++|.++.+|..+..+++|++|++
T Consensus 24 ~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~--~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L 100 (198)
T 1ds9_A 24 EAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS--SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWI 100 (198)
T ss_dssp TCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC--CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEE
T ss_pred chheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc--ccccCCCCCEEECCCCCcccccchhhcCCcCCEEEC
Confidence 3445555543 445555444 78999999999998775 66 458899999999999999999998888999999999
Q ss_pred cCCccCCcccccCCCCCCEEeecCCCCcccCh--hhcCCCCCCEEEccCCCCCCccCc----------ccccCCCCCcEE
Q 003193 288 ENCLVVDVAIIGDLKKLEILSLKHSSIEQLPR--EIGQLTCLKLLDLSNCSKLKEIRP----------NVISNLTRLEEL 355 (840)
Q Consensus 288 ~~~~~~~~~~i~~L~~L~~L~l~~~~l~~lp~--~i~~L~~L~~L~L~~~~~l~~~p~----------~~l~~L~~L~~L 355 (840)
++|.++..+.++++++|++|++++|.++.+|. .+..+++|++|++++| .+...++ ..+..+++|+.|
T Consensus 101 ~~N~l~~l~~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~~~~~~~~l~~L~~L 179 (198)
T 1ds9_A 101 SYNQIASLSGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGN-PLYNDYKENNATSEYRIEVVKRLPNLKKL 179 (198)
T ss_dssp EEEECCCHHHHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSC-HHHHHHHTTTTHHHHHHHHHHHCSSCSEE
T ss_pred cCCcCCcCCccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCC-ccccccccccchHHHHHHHHHhCCCcEEE
Confidence 99999995579999999999999999998875 7899999999999995 4533322 236889999999
Q ss_pred E
Q 003193 356 Y 356 (840)
Q Consensus 356 ~ 356 (840)
+
T Consensus 180 d 180 (198)
T 1ds9_A 180 D 180 (198)
T ss_dssp C
T ss_pred C
Confidence 7
|
| >2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} | Back alignment and structure |
|---|
Probab=99.07 E-value=5.8e-10 Score=105.22 Aligned_cols=102 Identities=22% Similarity=0.302 Sum_probs=63.6
Q ss_pred eEeeccCccccCCCchhhcCCCCCcEEEcCCCCCCCC-ChhhcCCCCCCEEEccCCccCC-cc-cccCCCCCCEEeecCC
Q 003193 236 LFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSL-PSSLGCLINLRTLSLENCLVVD-VA-IIGDLKKLEILSLKHS 312 (840)
Q Consensus 236 ~L~l~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~l-p~~l~~l~~L~~L~L~~~~~~~-~~-~i~~L~~L~~L~l~~~ 312 (840)
.++++++.+. .+|..+ .++|++|++++|.++.+ |..++++++|++|+|++|.++. |. .++++++|++|++++|
T Consensus 16 ~l~~~~n~l~-~iP~~~---~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 16 LVNCQNIRLA-SVPAGI---PTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp EEECCSSCCS-SCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred EEEeCCCCCC-ccCCCc---CCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence 4444444432 445433 25667777777777665 4556677777777777777666 33 3466777777777777
Q ss_pred CCcccChh-hcCCCCCCEEEccCCCCCCccC
Q 003193 313 SIEQLPRE-IGQLTCLKLLDLSNCSKLKEIR 342 (840)
Q Consensus 313 ~l~~lp~~-i~~L~~L~~L~L~~~~~l~~~p 342 (840)
+++.+|.. +..+++|++|++++ +.+...+
T Consensus 92 ~l~~l~~~~~~~l~~L~~L~L~~-N~~~c~~ 121 (174)
T 2r9u_A 92 HLKSIPRGAFDNLKSLTHIYLYN-NPWDCEC 121 (174)
T ss_dssp CCCCCCTTTTTTCTTCSEEECCS-SCBCTTB
T ss_pred ccceeCHHHhccccCCCEEEeCC-CCccccc
Confidence 77777654 66777777777777 4444443
|
| >3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D | Back alignment and structure |
|---|
Probab=99.01 E-value=1.4e-09 Score=102.20 Aligned_cols=95 Identities=25% Similarity=0.340 Sum_probs=58.1
Q ss_pred eEeeccCccccCCCchhhcCCCCCcEEEcCCCCCCCC-ChhhcCCCCCCEEEccCCccCC-c-ccccCCCCCCEEeecCC
Q 003193 236 LFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSL-PSSLGCLINLRTLSLENCLVVD-V-AIIGDLKKLEILSLKHS 312 (840)
Q Consensus 236 ~L~l~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~l-p~~l~~l~~L~~L~L~~~~~~~-~-~~i~~L~~L~~L~l~~~ 312 (840)
++++++|.+. .+|..+ .++|++|++++|.++.+ |..|.++++|++|+|++|.++. + ..+.++++|++|++++|
T Consensus 13 ~l~~s~n~l~-~ip~~~---~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N 88 (170)
T 3g39_A 13 TVDCSGKSLA-SVPTGI---PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDN 88 (170)
T ss_dssp EEECTTSCCS-SCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred EEEeCCCCcC-ccCccC---CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCC
Confidence 3444444433 344433 25566666666666665 4456666677777777766666 3 33566777777777777
Q ss_pred CCcccChh-hcCCCCCCEEEccC
Q 003193 313 SIEQLPRE-IGQLTCLKLLDLSN 334 (840)
Q Consensus 313 ~l~~lp~~-i~~L~~L~~L~L~~ 334 (840)
+++.+|.. +.++++|++|++++
T Consensus 89 ~l~~~~~~~~~~l~~L~~L~L~~ 111 (170)
T 3g39_A 89 QLKSIPRGAFDNLKSLTHIWLLN 111 (170)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCS
T ss_pred ccCEeCHHHhcCCCCCCEEEeCC
Confidence 77766653 66677777777776
|
| >3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=98.96 E-value=1.4e-09 Score=114.68 Aligned_cols=15 Identities=13% Similarity=-0.017 Sum_probs=11.9
Q ss_pred cCCCcEEEeccCCcc
Q 003193 209 DEAPTAISIPFRGIY 223 (840)
Q Consensus 209 ~~~l~~L~l~~~~~~ 223 (840)
..+++.|++++|.+.
T Consensus 48 l~~L~~LdLs~n~i~ 62 (329)
T 3sb4_A 48 FPSLKVLDISNAEIK 62 (329)
T ss_dssp CTTCCEEEEEEEEEC
T ss_pred hccCeEEecCcceeE
Confidence 567888888888776
|
| >3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=98.86 E-value=5.3e-09 Score=110.30 Aligned_cols=104 Identities=12% Similarity=0.137 Sum_probs=69.1
Q ss_pred hccCCCcEEEeccCCc-ccCCcccC-CCcceeEeeccCcccc-------------------CCCchhhcC--------CC
Q 003193 207 KIDEAPTAISIPFRGI-YELPERLG-FLKLKLFLFFTENLSL-------------------QIPDPFFEG--------MT 257 (840)
Q Consensus 207 ~~~~~l~~L~l~~~~~-~~l~~~~~-~~~L~~L~l~~~~~~~-------------------~~~~~~~~~--------l~ 257 (840)
....++++|.++++-- ..+..... +++|++|++++|.+.. .+|+..|.+ ++
T Consensus 22 ~~~~~l~~L~l~g~i~~~~~~~l~~~l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~~I~~~aF~~~~~~~~~g~~ 101 (329)
T 3sb4_A 22 EEANSITHLTLTGKLNAEDFRHLRDEFPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMANFVPAYAFSNVVNGVTKGKQ 101 (329)
T ss_dssp HHHHHCSEEEEEEEECHHHHHHHHHSCTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTTEECTTTTEEEETTEEEECT
T ss_pred hhhCceeEEEEeccccHHHHHHHHHhhccCeEEecCcceeEEecCccccccccccccccccccCHHHhcccccccccccC
Confidence 3456788888876411 11111112 7889999999887650 356667777 88
Q ss_pred CCcEEEcCCCCCCCCC-hhhcCCCCCCEEEccCCccCC--cccccCCCCCCEEeecC
Q 003193 258 ELRVLDLTGFRFHSLP-SSLGCLINLRTLSLENCLVVD--VAIIGDLKKLEILSLKH 311 (840)
Q Consensus 258 ~Lr~L~l~~~~~~~lp-~~l~~l~~L~~L~L~~~~~~~--~~~i~~L~~L~~L~l~~ 311 (840)
+|+.|++.+ .++.++ ..|.++.+|+.+++.+|.+.. +..|..+.++.++.+..
T Consensus 102 ~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~ 157 (329)
T 3sb4_A 102 TLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGS 157 (329)
T ss_dssp TCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTC
T ss_pred CCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcc
Confidence 888888888 777775 457888888888888887655 45566666666665544
|
| >2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 | Back alignment and structure |
|---|
Probab=98.80 E-value=1.3e-08 Score=108.32 Aligned_cols=99 Identities=23% Similarity=0.210 Sum_probs=69.1
Q ss_pred EEEcCCC-CCCCCChhhcCCCCCCEEEccC-CccCC--cccccCCCCCCEEeecCCCCcccCh-hhcCCCCCCEEEccCC
Q 003193 261 VLDLTGF-RFHSLPSSLGCLINLRTLSLEN-CLVVD--VAIIGDLKKLEILSLKHSSIEQLPR-EIGQLTCLKLLDLSNC 335 (840)
Q Consensus 261 ~L~l~~~-~~~~lp~~l~~l~~L~~L~L~~-~~~~~--~~~i~~L~~L~~L~l~~~~l~~lp~-~i~~L~~L~~L~L~~~ 335 (840)
.++++++ .++.+|. +..+.+|++|+|++ |.+.. +..+++|.+|++|+|++|+++.+|. .+.+|++|++|+|++
T Consensus 12 ~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~- 89 (347)
T 2ifg_A 12 GLRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF- 89 (347)
T ss_dssp CEECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS-
T ss_pred EEEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCC-
Confidence 3466666 6777777 77777777777775 77766 3567777777777777777776654 457777777777777
Q ss_pred CCCCccCcccccCCCCCcEEEccCCcc
Q 003193 336 SKLKEIRPNVISNLTRLEELYMGNSFT 362 (840)
Q Consensus 336 ~~l~~~p~~~l~~L~~L~~L~l~~~~~ 362 (840)
+.+..+|+..+..+. |+.|++.+|.+
T Consensus 90 N~l~~~~~~~~~~~~-L~~l~l~~N~~ 115 (347)
T 2ifg_A 90 NALESLSWKTVQGLS-LQELVLSGNPL 115 (347)
T ss_dssp SCCSCCCSTTTCSCC-CCEEECCSSCC
T ss_pred CccceeCHHHcccCC-ceEEEeeCCCc
Confidence 567777766555554 77777777654
|
| >4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A | Back alignment and structure |
|---|
Probab=98.70 E-value=1.8e-07 Score=100.75 Aligned_cols=256 Identities=10% Similarity=0.139 Sum_probs=140.3
Q ss_pred CCCcEEEeccCCcccCCccc-CCCcceeEeeccCccccCCCchhhcCCCCCcEEEcCCCCCCCCC-hhhcCCCCCCEEEc
Q 003193 210 EAPTAISIPFRGIYELPERL-GFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLP-SSLGCLINLRTLSL 287 (840)
Q Consensus 210 ~~l~~L~l~~~~~~~l~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp-~~l~~l~~L~~L~L 287 (840)
..++.+.+.. .+..++... .-.+|+.+.+..+ ...++...|.+. +|+.+.+.. .++.++ ..|.++.+|+.+++
T Consensus 113 ~~l~~i~ip~-~i~~I~~~aF~~~~L~~i~l~~~--i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l 187 (401)
T 4fdw_A 113 KGYNEIILPN-SVKSIPKDAFRNSQIAKVVLNEG--LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKADL 187 (401)
T ss_dssp SSCSEEECCT-TCCEECTTTTTTCCCSEEECCTT--CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEEC
T ss_pred CCccEEEECC-ccCEehHhhcccCCccEEEeCCC--ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCeeec
Confidence 4455555542 344444322 2236777777654 234556666664 577777775 555553 45777788888888
Q ss_pred cCCccCC-cccccCCCCCCEEeecCCCCcccCh-hhcCCCCCCEEEccCCCCCCccCcccccCCCCCcEEEccCCcccce
Q 003193 288 ENCLVVD-VAIIGDLKKLEILSLKHSSIEQLPR-EIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGNSFTQWK 365 (840)
Q Consensus 288 ~~~~~~~-~~~i~~L~~L~~L~l~~~~l~~lp~-~i~~L~~L~~L~L~~~~~l~~~p~~~l~~L~~L~~L~l~~~~~~~~ 365 (840)
.+|.+.. +.......+|+.+.+.. .++.++. .+.++++|+.+++.. .+..++...|.+ .+|+.+.+..+ +. .
T Consensus 188 ~~n~l~~I~~~aF~~~~L~~l~lp~-~l~~I~~~aF~~~~~L~~l~l~~--~l~~I~~~aF~~-~~L~~i~lp~~-i~-~ 261 (401)
T 4fdw_A 188 SKTKITKLPASTFVYAGIEEVLLPV-TLKEIGSQAFLKTSQLKTIEIPE--NVSTIGQEAFRE-SGITTVKLPNG-VT-N 261 (401)
T ss_dssp TTSCCSEECTTTTTTCCCSEEECCT-TCCEECTTTTTTCTTCCCEECCT--TCCEECTTTTTT-CCCSEEEEETT-CC-E
T ss_pred CCCcceEechhhEeecccCEEEeCC-chheehhhHhhCCCCCCEEecCC--CccCcccccccc-CCccEEEeCCC-cc-E
Confidence 7777766 43333357788887764 3666653 466777888888775 466677666666 67777777443 11 1
Q ss_pred ecCCCCCCcccccCCCCCCeEEEecCCCC-----CCCCcccccCcceEEEEEcCccCCCCCccccceEEEeeCCCccchh
Q 003193 366 VEGQSNASLGELKQLSRLTTLEVHIPDAQ-----VMPQDLVFVELERFRICIGDVWSWSDGYETSKTLKLQLNNSTYLGY 440 (840)
Q Consensus 366 ~~~~~~~~l~~l~~l~~L~~L~l~~~~~~-----~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~ 440 (840)
+ .-..+.++++|+.+.+..+... .++... +..+.+|+.+.+. +....++.
T Consensus 262 I------~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~a------------------F~~c~~L~~l~l~-~~i~~I~~ 316 (401)
T 4fdw_A 262 I------ASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYC------------------LEGCPKLARFEIP-ESIRILGQ 316 (401)
T ss_dssp E------CTTTTTTCTTCCEEEEESSCCCCCTTCEECTTT------------------TTTCTTCCEECCC-TTCCEECT
T ss_pred E------ChhHhhCCCCCCEEEeCCccccCCcccEECHHH------------------hhCCccCCeEEeC-CceEEEhh
Confidence 1 1144566777777777765443 122221 2223333333333 12223333
Q ss_pred hHHHHHhcccceeeccccccccccc-cccchhhcccccEEEeecCCCeEEEEeCCCcccccc-ccceeeccc
Q 003193 441 GMKMLLKRTEDLHLDELAGFKNVVH-ELDDEEGFARLRHLHVHNGPEILHILNSDGRVGTFP-LLESLFLHN 510 (840)
Q Consensus 441 ~~~~~l~~L~~L~L~~~~~~~~~~~-~l~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~-~L~~L~l~~ 510 (840)
..+..+++|+.+.|..+ ++.+.. .| .++ +|+.+.+.++.- ..+. ...+.+++ +++.|++-.
T Consensus 317 ~aF~~c~~L~~l~lp~~--l~~I~~~aF---~~~-~L~~l~l~~n~~-~~l~--~~~F~~~~~~l~~l~vp~ 379 (401)
T 4fdw_A 317 GLLGGNRKVTQLTIPAN--VTQINFSAF---NNT-GIKEVKVEGTTP-PQVF--EKVWYGFPDDITVIRVPA 379 (401)
T ss_dssp TTTTTCCSCCEEEECTT--CCEECTTSS---SSS-CCCEEEECCSSC-CBCC--CSSCCCSCTTCCEEEECG
T ss_pred hhhcCCCCccEEEECcc--ccEEcHHhC---CCC-CCCEEEEcCCCC-cccc--cccccCCCCCccEEEeCH
Confidence 33333456666766443 333322 23 456 888888887642 2221 11223443 567777654
|
| >3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.67 E-value=3.2e-09 Score=113.30 Aligned_cols=156 Identities=14% Similarity=0.057 Sum_probs=99.0
Q ss_pred hccCCCcEEEeccCCcccCC-----ccc--CCCcceeEeeccCccccCCCchhhcCCCCCcEEEcCCCCCCCC-----Ch
Q 003193 207 KIDEAPTAISIPFRGIYELP-----ERL--GFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSL-----PS 274 (840)
Q Consensus 207 ~~~~~l~~L~l~~~~~~~l~-----~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~l-----p~ 274 (840)
...+.++.|++++|.+.... ..+ ..++|+.|++++|.+...-...+...+++|++|++++|.++.. ..
T Consensus 69 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~ 148 (372)
T 3un9_A 69 EVLSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRD 148 (372)
T ss_dssp HHHTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHH
T ss_pred HHHhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHH
Confidence 45667889999999875322 111 2367888888888765433333444556788888888877632 22
Q ss_pred hh-cCCCCCCEEEccCCccCC------cccccCCCCCCEEeecCCCCcc-----cChhhcCCCCCCEEEccCCCCCCccC
Q 003193 275 SL-GCLINLRTLSLENCLVVD------VAIIGDLKKLEILSLKHSSIEQ-----LPREIGQLTCLKLLDLSNCSKLKEIR 342 (840)
Q Consensus 275 ~l-~~l~~L~~L~L~~~~~~~------~~~i~~L~~L~~L~l~~~~l~~-----lp~~i~~L~~L~~L~L~~~~~l~~~p 342 (840)
.+ ....+|++|+|++|.+++ ...+...++|++|++++|.++. ++..+...++|++|++++| .++...
T Consensus 149 ~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N-~i~~~g 227 (372)
T 3un9_A 149 LLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYN-GAGDTA 227 (372)
T ss_dssp HHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSS-CCCHHH
T ss_pred HHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCC-CCCHHH
Confidence 22 245678888888887755 2334567778888888887763 3455666777888888774 454322
Q ss_pred cc----cccCCCCCcEEEccCCccc
Q 003193 343 PN----VISNLTRLEELYMGNSFTQ 363 (840)
Q Consensus 343 ~~----~l~~L~~L~~L~l~~~~~~ 363 (840)
.. .+...++|++|++++|.+.
T Consensus 228 ~~~l~~~L~~~~~L~~L~Ls~N~i~ 252 (372)
T 3un9_A 228 ALALARAAREHPSLELLHLYFNELS 252 (372)
T ss_dssp HHHHHHHHHHCSSCCEEECTTSSCC
T ss_pred HHHHHHHHHhCCCCCEEeccCCCCC
Confidence 11 1344577777777777553
|
| >4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A | Back alignment and structure |
|---|
Probab=98.66 E-value=1.1e-06 Score=94.62 Aligned_cols=142 Identities=14% Similarity=0.177 Sum_probs=102.2
Q ss_pred CCcceeEeeccCccccCCCchhhcCCCCCcEEEcCCCCCCCCCh-hhcCCCCCCEEEccCCccCC--cccccCCCCCCEE
Q 003193 231 FLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPS-SLGCLINLRTLSLENCLVVD--VAIIGDLKKLEIL 307 (840)
Q Consensus 231 ~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~-~l~~l~~L~~L~L~~~~~~~--~~~i~~L~~L~~L 307 (840)
+..++.+.+..+ ...++...|.+. +|+.+.+..+ ++.+++ +|.+ .+|+.+.+.. .+.. ...+.++.+|+.+
T Consensus 112 ~~~l~~i~ip~~--i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~-~~L~~i~lp~-~l~~I~~~aF~~c~~L~~l 185 (401)
T 4fdw_A 112 LKGYNEIILPNS--VKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFN-STVQEIVFPS-TLEQLKEDIFYYCYNLKKA 185 (401)
T ss_dssp CSSCSEEECCTT--CCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTT-CCCCEEECCT-TCCEECSSTTTTCTTCCEE
T ss_pred cCCccEEEECCc--cCEehHhhcccC-CccEEEeCCC-ccEECHHhcCC-CCceEEEeCC-CccEehHHHhhCcccCCee
Confidence 355666666543 224566667775 7999998876 666643 4555 4799999986 4554 5778899999999
Q ss_pred eecCCCCcccChhhcCCCCCCEEEccCCCCCCccCcccccCCCCCcEEEccCCcccceecCCCCCCcccccCCCCCCeEE
Q 003193 308 SLKHSSIEQLPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGNSFTQWKVEGQSNASLGELKQLSRLTTLE 387 (840)
Q Consensus 308 ~l~~~~l~~lp~~i~~L~~L~~L~L~~~~~l~~~p~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~l~~L~~L~ 387 (840)
++.+|+++.+|...-...+|+.+.+.. .+..++...|.++++|+.+.+..+- . .++ -..+.+ .+|+.+.
T Consensus 186 ~l~~n~l~~I~~~aF~~~~L~~l~lp~--~l~~I~~~aF~~~~~L~~l~l~~~l-~-~I~------~~aF~~-~~L~~i~ 254 (401)
T 4fdw_A 186 DLSKTKITKLPASTFVYAGIEEVLLPV--TLKEIGSQAFLKTSQLKTIEIPENV-S-TIG------QEAFRE-SGITTVK 254 (401)
T ss_dssp ECTTSCCSEECTTTTTTCCCSEEECCT--TCCEECTTTTTTCTTCCCEECCTTC-C-EEC------TTTTTT-CCCSEEE
T ss_pred ecCCCcceEechhhEeecccCEEEeCC--chheehhhHhhCCCCCCEEecCCCc-c-Ccc------cccccc-CCccEEE
Confidence 999999999987766678999999985 4888888889999999999987642 1 111 122333 5677777
Q ss_pred Ee
Q 003193 388 VH 389 (840)
Q Consensus 388 l~ 389 (840)
+.
T Consensus 255 lp 256 (401)
T 4fdw_A 255 LP 256 (401)
T ss_dssp EE
T ss_pred eC
Confidence 74
|
| >2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 | Back alignment and structure |
|---|
Probab=98.65 E-value=5.9e-08 Score=103.15 Aligned_cols=99 Identities=21% Similarity=0.199 Sum_probs=73.5
Q ss_pred EeeccC-ccccCCCchhhcCCCCCcEEEcCC-CCCCCCC-hhhcCCCCCCEEEccCCccCC--cccccCCCCCCEEeecC
Q 003193 237 FLFFTE-NLSLQIPDPFFEGMTELRVLDLTG-FRFHSLP-SSLGCLINLRTLSLENCLVVD--VAIIGDLKKLEILSLKH 311 (840)
Q Consensus 237 L~l~~~-~~~~~~~~~~~~~l~~Lr~L~l~~-~~~~~lp-~~l~~l~~L~~L~L~~~~~~~--~~~i~~L~~L~~L~l~~ 311 (840)
+++.++ .+. .+|. +..+++|++|+|++ |.++.+| ..|++|.+|++|+|++|.++. +..|++|++|++|+|++
T Consensus 13 v~~~~~n~l~-~ip~--l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~ 89 (347)
T 2ifg_A 13 LRCTRDGALD-SLHH--LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF 89 (347)
T ss_dssp EECCSSCCCT-TTTT--SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred EEcCCCCCCC-ccCC--CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCC
Confidence 455555 333 5676 47788888888885 8888776 568888888888888888877 45678888888888888
Q ss_pred CCCcccChhhcCCCCCCEEEccCCCCCC
Q 003193 312 SSIEQLPREIGQLTCLKLLDLSNCSKLK 339 (840)
Q Consensus 312 ~~l~~lp~~i~~L~~L~~L~L~~~~~l~ 339 (840)
|+++.+|..+.....|++|++.+ +.+.
T Consensus 90 N~l~~~~~~~~~~~~L~~l~l~~-N~~~ 116 (347)
T 2ifg_A 90 NALESLSWKTVQGLSLQELVLSG-NPLH 116 (347)
T ss_dssp SCCSCCCSTTTCSCCCCEEECCS-SCCC
T ss_pred CccceeCHHHcccCCceEEEeeC-CCcc
Confidence 88888887655444588888887 4443
|
| >3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.60 E-value=2.6e-09 Score=114.01 Aligned_cols=161 Identities=14% Similarity=0.121 Sum_probs=113.0
Q ss_pred CCcceeEeeccCccccCCCch----hhcCCCCCcEEEcCCCCCCC--CChhhcCCCCCCEEEccCCccCC--cccc----
Q 003193 231 FLKLKLFLFFTENLSLQIPDP----FFEGMTELRVLDLTGFRFHS--LPSSLGCLINLRTLSLENCLVVD--VAII---- 298 (840)
Q Consensus 231 ~~~L~~L~l~~~~~~~~~~~~----~~~~l~~Lr~L~l~~~~~~~--lp~~l~~l~~L~~L~L~~~~~~~--~~~i---- 298 (840)
.++|+.|++++|.+....... +....++|++|++++|.++. +..-...+.+|++|+|++|.+++ ...+
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L 150 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL 150 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence 567899999998865322111 11234799999999999863 22223346689999999999877 3333
Q ss_pred -cCCCCCCEEeecCCCCcc-----cChhhcCCCCCCEEEccCCCCCCccC----cccccCCCCCcEEEccCCcccceecC
Q 003193 299 -GDLKKLEILSLKHSSIEQ-----LPREIGQLTCLKLLDLSNCSKLKEIR----PNVISNLTRLEELYMGNSFTQWKVEG 368 (840)
Q Consensus 299 -~~L~~L~~L~l~~~~l~~-----lp~~i~~L~~L~~L~L~~~~~l~~~p----~~~l~~L~~L~~L~l~~~~~~~~~~~ 368 (840)
....+|++|++++|.++. ++..+...++|++|+|++| .++... ...+...++|++|++++|.+.....
T Consensus 151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N-~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~- 228 (372)
T 3un9_A 151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHT-GLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAA- 228 (372)
T ss_dssp HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTS-SCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHH-
T ss_pred HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCC-CCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHH-
Confidence 356889999999999874 5666788999999999994 565432 1225677899999999997642111
Q ss_pred CCCCCcccccCCCCCCeEEEecCCCCC
Q 003193 369 QSNASLGELKQLSRLTTLEVHIPDAQV 395 (840)
Q Consensus 369 ~~~~~l~~l~~l~~L~~L~l~~~~~~~ 395 (840)
......+...++|+.|++++|.+..
T Consensus 229 --~~l~~~L~~~~~L~~L~Ls~N~i~~ 253 (372)
T 3un9_A 229 --LALARAAREHPSLELLHLYFNELSS 253 (372)
T ss_dssp --HHHHHHHHHCSSCCEEECTTSSCCH
T ss_pred --HHHHHHHHhCCCCCEEeccCCCCCH
Confidence 0112345567889999999987653
|
| >3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A | Back alignment and structure |
|---|
Probab=98.40 E-value=1.2e-07 Score=87.47 Aligned_cols=89 Identities=16% Similarity=0.232 Sum_probs=49.6
Q ss_pred CcceEecccccchhhcccCCccccccCCCceEEEecccCCcceeechhhHhh----hcccceeeecccccchhhhccCcc
Q 003193 649 SLKKLKLSSINVEKIWLNSFSAIESWGKNLTKLTVEKCGRLKFLFSSSMVNG----LEQLQQLDISHCKSMNEVINTRVG 724 (840)
Q Consensus 649 ~L~~L~l~~c~l~~~~~~~~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~~----l~sL~~L~i~~C~~L~~i~~~~~~ 724 (840)
.|++|++++|.+++.....+ ..+++|++|++++|.++++-.... +.. .++|++|+|++|+++++- |
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L----~~~~~L~~L~L~~C~~ItD~gL~~-L~~~~~~~~~L~~L~Ls~C~~ITD~-----G 131 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHM----EGLQYVEKIRLCKCHYIEDGCLER-LSQLENLQKSMLEMEIISCGNVTDK-----G 131 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGG----TTCSCCCEEEEESCTTCCHHHHHH-HHTCHHHHHHCCEEEEESCTTCCHH-----H
T ss_pred eEeEEeCcCCCccHHHHHHh----cCCCCCCEEEeCCCCccCHHHHHH-HHhcccccCCCCEEEcCCCCcCCHH-----H
Confidence 57788888887665433333 356777777777777777642211 222 235777777777766632 2
Q ss_pred cccCccccccccccccccccCCccee
Q 003193 725 RDDNMIEMVFPKLVSLQLSHLPKLTR 750 (840)
Q Consensus 725 ~~~~~~~~~l~sL~~L~i~~c~~L~~ 750 (840)
+.. ...+++|++|+|++|+.++.
T Consensus 132 l~~---L~~~~~L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 132 IIA---LHHFRNLKYLFLSDLPGVKE 154 (176)
T ss_dssp HHH---GGGCTTCCEEEEESCTTCCC
T ss_pred HHH---HhcCCCCCEEECCCCCCCCc
Confidence 111 11145555555555555544
|
| >4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.33 E-value=1.1e-05 Score=87.01 Aligned_cols=123 Identities=13% Similarity=0.190 Sum_probs=60.1
Q ss_pred CCCcceeEeeccCccccCCCchhhcCCCCCcEEEcCCCCCCCCC-hhhcCCCCCCEEEccCCccCC-cccccCCCCCCEE
Q 003193 230 GFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLP-SSLGCLINLRTLSLENCLVVD-VAIIGDLKKLEIL 307 (840)
Q Consensus 230 ~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp-~~l~~l~~L~~L~L~~~~~~~-~~~i~~L~~L~~L 307 (840)
++.+|+.+.+..+ ...+....|.++.+|+.+++..+ ++.++ ..+.++..|+.+.+..+-..- ...+.+...++..
T Consensus 69 ~c~~L~~i~lp~~--i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~l~~i~~~aF~~~~~~~~~ 145 (394)
T 4fs7_A 69 GCRKVTEIKIPST--VREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLMLKSIGVEAFKGCDFKEIT 145 (394)
T ss_dssp TCTTEEEEECCTT--CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTTCCEECTTTTTTCCCSEEE
T ss_pred CCCCceEEEeCCC--ccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCceeeecceeeecccccccc
Confidence 5666777766532 22455566677777777777543 44442 345556666655554321110 2233333222222
Q ss_pred eecCCCCcccC-hhhcCCCCCCEEEccCCCCCCccCcccccCCCCCcEEEccC
Q 003193 308 SLKHSSIEQLP-REIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGN 359 (840)
Q Consensus 308 ~l~~~~l~~lp-~~i~~L~~L~~L~L~~~~~l~~~p~~~l~~L~~L~~L~l~~ 359 (840)
... .+..+. ..+.++++|+.+.+.. .+..++...+..+.+|+.+.+..
T Consensus 146 ~~~--~~~~i~~~aF~~c~~L~~i~l~~--~~~~I~~~~F~~c~~L~~i~l~~ 194 (394)
T 4fs7_A 146 IPE--GVTVIGDEAFATCESLEYVSLPD--SMETLHNGLFSGCGKLKSIKLPR 194 (394)
T ss_dssp CCT--TCCEECTTTTTTCTTCCEEECCT--TCCEECTTTTTTCTTCCBCCCCT
T ss_pred cCc--cccccchhhhcccCCCcEEecCC--ccceeccccccCCCCceEEEcCC
Confidence 111 112221 2345566666666653 34455555556666666665544
|
| >3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A | Back alignment and structure |
|---|
Probab=98.32 E-value=1.1e-07 Score=87.59 Aligned_cols=93 Identities=12% Similarity=0.166 Sum_probs=69.5
Q ss_pred CCceEEEecccCCcceeechhhHhhhcccceeeecccccchhhhccCcccccCccc-cccccccccccccCCcceeecCC
Q 003193 676 KNLTKLTVEKCGRLKFLFSSSMVNGLEQLQQLDISHCKSMNEVINTRVGRDDNMIE-MVFPKLVSLQLSHLPKLTRFGIG 754 (840)
Q Consensus 676 ~~L~~L~i~~C~~L~~l~~~~~~~~l~sL~~L~i~~C~~L~~i~~~~~~~~~~~~~-~~l~sL~~L~i~~c~~L~~l~~~ 754 (840)
..|++|++++|. +++... ..+.++++|++|++++|..+++- ++..-... ...++|++|+|++|+++++-...
T Consensus 61 ~~L~~LDLs~~~-Itd~GL-~~L~~~~~L~~L~L~~C~~ItD~-----gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~ 133 (176)
T 3e4g_A 61 YKIQAIDATDSC-IMSIGF-DHMEGLQYVEKIRLCKCHYIEDG-----CLERLSQLENLQKSMLEMEIISCGNVTDKGII 133 (176)
T ss_dssp CCEEEEEEESCC-CCGGGG-GGGTTCSCCCEEEEESCTTCCHH-----HHHHHHTCHHHHHHCCEEEEESCTTCCHHHHH
T ss_pred ceEeEEeCcCCC-ccHHHH-HHhcCCCCCCEEEeCCCCccCHH-----HHHHHHhcccccCCCCEEEcCCCCcCCHHHHH
Confidence 579999999997 776532 33578999999999999988743 22110000 01358999999999999886544
Q ss_pred CCccCCCcceEEeccCCCcce
Q 003193 755 DSVEFPSLCQLQIACCPNLKI 775 (840)
Q Consensus 755 ~~~~l~sL~~L~i~~C~~L~~ 775 (840)
.+.++++|++|+|++||++..
T Consensus 134 ~L~~~~~L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 134 ALHHFRNLKYLFLSDLPGVKE 154 (176)
T ss_dssp HGGGCTTCCEEEEESCTTCCC
T ss_pred HHhcCCCCCEEECCCCCCCCc
Confidence 455789999999999999854
|
| >4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.20 E-value=2.2e-05 Score=84.72 Aligned_cols=301 Identities=17% Similarity=0.135 Sum_probs=166.3
Q ss_pred ccCCCcEEEeccCCcccCCccc--CCCcceeEeeccCccccCCCchhhcCCCCCcEEEcCCCCCCCC-ChhhcCCCCCCE
Q 003193 208 IDEAPTAISIPFRGIYELPERL--GFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSL-PSSLGCLINLRT 284 (840)
Q Consensus 208 ~~~~l~~L~l~~~~~~~l~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~l-p~~l~~l~~L~~ 284 (840)
...+++.+.+. +.+..+.... ++.+|+.+.+..+ ...++...|.++..|+.+.+..+ +..+ ...|.++..+..
T Consensus 69 ~c~~L~~i~lp-~~i~~I~~~aF~~c~~L~~i~lp~~--l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~~aF~~~~~~~~ 144 (394)
T 4fs7_A 69 GCRKVTEIKIP-STVREIGEFAFENCSKLEIINIPDS--VKMIGRCTFSGCYALKSILLPLM-LKSIGVEAFKGCDFKEI 144 (394)
T ss_dssp TCTTEEEEECC-TTCCEECTTTTTTCTTCCEECCCTT--CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTCCCSEE
T ss_pred CCCCceEEEeC-CCccCcchhHhhCCCCCcEEEeCCC--ceEccchhhcccccchhhcccCc-eeeecceeeeccccccc
Confidence 34567888886 3466666543 7899999999754 23567777889999988777654 3333 334555554444
Q ss_pred EEccCCccCCcccccCCCCCCEEeecCCCCcccC-hhhcCCCCCCEEEccCCCCCCccCcccccCCCCCcEEEccCCccc
Q 003193 285 LSLENCLVVDVAIIGDLKKLEILSLKHSSIEQLP-REIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGNSFTQ 363 (840)
Q Consensus 285 L~L~~~~~~~~~~i~~L~~L~~L~l~~~~l~~lp-~~i~~L~~L~~L~L~~~~~l~~~p~~~l~~L~~L~~L~l~~~~~~ 363 (840)
.............+.++.+|+.+.+..+ ++.++ ..+..+.+|+.+++.. .++.++...+.++..|+.+.+..+...
T Consensus 145 ~~~~~~~~i~~~aF~~c~~L~~i~l~~~-~~~I~~~~F~~c~~L~~i~l~~--~~~~I~~~~F~~~~~L~~i~~~~~~~~ 221 (394)
T 4fs7_A 145 TIPEGVTVIGDEAFATCESLEYVSLPDS-METLHNGLFSGCGKLKSIKLPR--NLKIIRDYCFAECILLENMEFPNSLYY 221 (394)
T ss_dssp ECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCBCCCCT--TCCEECTTTTTTCTTCCBCCCCTTCCE
T ss_pred ccCccccccchhhhcccCCCcEEecCCc-cceeccccccCCCCceEEEcCC--CceEeCchhhccccccceeecCCCceE
Confidence 4333333222567888999999999764 45555 3467788999998875 477777777888888888876654321
Q ss_pred ceecCCCCCCcccccCCCCCCeEEEecCCCCCCCCcc--cccCcceEEEEEcCccCCCCCccccceEEEeeCCCccchhh
Q 003193 364 WKVEGQSNASLGELKQLSRLTTLEVHIPDAQVMPQDL--VFVELERFRICIGDVWSWSDGYETSKTLKLQLNNSTYLGYG 441 (840)
Q Consensus 364 ~~~~~~~~~~l~~l~~l~~L~~L~l~~~~~~~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~ 441 (840)
.. ...-...+|+.+.+... ...+.... ....++.+.+..+. ..++..
T Consensus 222 --i~-------~~~~~~~~l~~i~ip~~-~~~i~~~~f~~~~~l~~~~~~~~~---------------------~~i~~~ 270 (394)
T 4fs7_A 222 --LG-------DFALSKTGVKNIIIPDS-FTELGKSVFYGCTDLESISIQNNK---------------------LRIGGS 270 (394)
T ss_dssp --EC-------TTTTTTCCCCEEEECTT-CCEECSSTTTTCSSCCEEEECCTT---------------------CEECSC
T ss_pred --ee-------hhhcccCCCceEEECCC-ceecccccccccccceeEEcCCCc---------------------ceeecc
Confidence 11 11112345666665422 22222221 33444444432111 011111
Q ss_pred HHHHHhcccceeeccccccccccccccchhhcccccEEEeecCCCeEEEEeCCCccccccccceeecccccccccccccc
Q 003193 442 MKMLLKRTEDLHLDELAGFKNVVHELDDEEGFARLRHLHVHNGPEILHILNSDGRVGTFPLLESLFLHNLINLEKVCDGK 521 (840)
Q Consensus 442 ~~~~l~~L~~L~L~~~~~~~~~~~~l~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~ 521 (840)
.+...+.++.+...... .....+ ..+.+|+.+.+.+. ++.+.. ..+..+.+|+.+.|.+ +++.+....
T Consensus 271 ~F~~~~~l~~~~~~~~~---i~~~~F---~~~~~L~~i~l~~~--i~~I~~--~aF~~c~~L~~i~lp~--~v~~I~~~a 338 (394)
T 4fs7_A 271 LFYNCSGLKKVIYGSVI---VPEKTF---YGCSSLTEVKLLDS--VKFIGE--EAFESCTSLVSIDLPY--LVEEIGKRS 338 (394)
T ss_dssp TTTTCTTCCEEEECSSE---ECTTTT---TTCTTCCEEEECTT--CCEECT--TTTTTCTTCCEECCCT--TCCEECTTT
T ss_pred ccccccccceeccCcee---eccccc---cccccccccccccc--cceech--hhhcCCCCCCEEEeCC--cccEEhHHh
Confidence 11112333333332211 001112 45667777776543 444432 2334556777777753 355553332
Q ss_pred cccCCCCcccCCccEEEEecCCCcccccchhHHhhcccccEEEEec
Q 003193 522 VRLNEDDKSFSNLRIIKVEGCHRVKHLFPFSLVKNLLQLQKVKVTD 567 (840)
Q Consensus 522 ~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~i~~ 567 (840)
+ ..+.+|+.+.+.. +++.+.. ..+.++++|+++.+..
T Consensus 339 F------~~c~~L~~i~lp~--~l~~I~~-~aF~~C~~L~~i~lp~ 375 (394)
T 4fs7_A 339 F------RGCTSLSNINFPL--SLRKIGA-NAFQGCINLKKVELPK 375 (394)
T ss_dssp T------TTCTTCCEECCCT--TCCEECT-TTBTTCTTCCEEEEEG
T ss_pred c------cCCCCCCEEEECc--cccEehH-HHhhCCCCCCEEEECC
Confidence 2 3566777777743 3565533 3456778888888754
|
| >2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=98.12 E-value=1.1e-06 Score=92.62 Aligned_cols=159 Identities=17% Similarity=0.167 Sum_probs=83.2
Q ss_pred CCCcceeEeeccCccc--------cCCCchhhcCCCCCcEEEcCCCCCCCCChhhcCCCCCCEEEccCCccCC--ccccc
Q 003193 230 GFLKLKLFLFFTENLS--------LQIPDPFFEGMTELRVLDLTGFRFHSLPSSLGCLINLRTLSLENCLVVD--VAIIG 299 (840)
Q Consensus 230 ~~~~L~~L~l~~~~~~--------~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~--~~~i~ 299 (840)
.+++|+.|.+...... ..-...++..+++|+.|+++++.-..++. + .+++|+.|++..|.+.. ...++
T Consensus 137 ~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~ 214 (362)
T 2ra8_A 137 KFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLSIGK-K-PRPNLKSLEIISGGLPDSVVEDIL 214 (362)
T ss_dssp HHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTCBCCS-C-BCTTCSEEEEECSBCCHHHHHHHH
T ss_pred hcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCceecc-c-cCCCCcEEEEecCCCChHHHHHHH
Confidence 3567777766443210 00122445667778888887763234444 3 36778888877776654 33343
Q ss_pred --CCCCCCEEeecCC--C------CcccChhh--cCCCCCCEEEccCCCCCCccCccc--ccCCCCCcEEEccCCcccce
Q 003193 300 --DLKKLEILSLKHS--S------IEQLPREI--GQLTCLKLLDLSNCSKLKEIRPNV--ISNLTRLEELYMGNSFTQWK 365 (840)
Q Consensus 300 --~L~~L~~L~l~~~--~------l~~lp~~i--~~L~~L~~L~L~~~~~l~~~p~~~--l~~L~~L~~L~l~~~~~~~~ 365 (840)
.+++|++|+|+.+ . +..+...+ ..+++|++|++.+|......+... ...+++|++|+++.|.+...
T Consensus 215 ~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~ 294 (362)
T 2ra8_A 215 GSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDE 294 (362)
T ss_dssp HSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHH
T ss_pred HccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChH
Confidence 6777777777421 1 22222222 246777777777643222111111 12466777777776654321
Q ss_pred ecCCCCCCcccccCCCCCCeEEEecCCC
Q 003193 366 VEGQSNASLGELKQLSRLTTLEVHIPDA 393 (840)
Q Consensus 366 ~~~~~~~~l~~l~~l~~L~~L~l~~~~~ 393 (840)
.. ......+..+++|+.|+++.|.+
T Consensus 295 G~---~~L~~~L~~l~~L~~L~L~~n~i 319 (362)
T 2ra8_A 295 GA---RLLLDHVDKIKHLKFINMKYNYL 319 (362)
T ss_dssp HH---HHHHTTHHHHTTCSEEECCSBBC
T ss_pred HH---HHHHhhcccCCcceEEECCCCcC
Confidence 00 01112234556777777766543
|
| >1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1 | Back alignment and structure |
|---|
Probab=97.97 E-value=3.8e-06 Score=79.70 Aligned_cols=109 Identities=15% Similarity=0.125 Sum_probs=64.4
Q ss_pred hcCCCCCcEEEcCCC-CCCC-----CChhhcCCCCCCEEEccCCccCC--c----ccccCCCCCCEEeecCCCCcc----
Q 003193 253 FEGMTELRVLDLTGF-RFHS-----LPSSLGCLINLRTLSLENCLVVD--V----AIIGDLKKLEILSLKHSSIEQ---- 316 (840)
Q Consensus 253 ~~~l~~Lr~L~l~~~-~~~~-----lp~~l~~l~~L~~L~L~~~~~~~--~----~~i~~L~~L~~L~l~~~~l~~---- 316 (840)
+...+.|++|++++| .+.. +...+...++|++|+|++|.+.+ . ..+...++|++|+|++|.|..
T Consensus 32 l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~ 111 (185)
T 1io0_A 32 QNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGIL 111 (185)
T ss_dssp HTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHH
T ss_pred HhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHH
Confidence 455667777777777 6642 34455666777777777777665 1 234445667777777776662
Q ss_pred -cChhhcCCCCCCEEEc--cCCCCCCccCc----ccccCCCCCcEEEccCCcc
Q 003193 317 -LPREIGQLTCLKLLDL--SNCSKLKEIRP----NVISNLTRLEELYMGNSFT 362 (840)
Q Consensus 317 -lp~~i~~L~~L~~L~L--~~~~~l~~~p~----~~l~~L~~L~~L~l~~~~~ 362 (840)
+...+...++|++|++ ++ +.++.-.. ..+...++|++|++++|.+
T Consensus 112 ~l~~~L~~n~~L~~L~L~~~~-N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i 163 (185)
T 1io0_A 112 ALVEALQSNTSLIELRIDNQS-QPLGNNVEMEIANMLEKNTTLLKFGYHFTQQ 163 (185)
T ss_dssp HHHHGGGGCSSCCEEECCCCS-SCCCHHHHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred HHHHHHHhCCCceEEEecCCC-CCCCHHHHHHHHHHHHhCCCcCEEeccCCCC
Confidence 4555666667777777 44 34443110 1134446666666666643
|
| >3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A | Back alignment and structure |
|---|
Probab=97.78 E-value=2.6e-05 Score=77.76 Aligned_cols=78 Identities=28% Similarity=0.268 Sum_probs=55.3
Q ss_pred cCCCCCcEEEcCCCCCCCC---ChhhcCCCCCCEEEccCCccCCcccccCCC--CCCEEeecCCCCcc-cC-------hh
Q 003193 254 EGMTELRVLDLTGFRFHSL---PSSLGCLINLRTLSLENCLVVDVAIIGDLK--KLEILSLKHSSIEQ-LP-------RE 320 (840)
Q Consensus 254 ~~l~~Lr~L~l~~~~~~~l---p~~l~~l~~L~~L~L~~~~~~~~~~i~~L~--~L~~L~l~~~~l~~-lp-------~~ 320 (840)
.++++|++|+|++|.++.+ |..+..+++|++|+|++|.+.....+..+. +|++|++++|.+.. +| ..
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~i 246 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLCDTFRDQSTYISAI 246 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHHH
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcccCCcceEEccCCcCccccCcchhHHHHH
Confidence 4677888888888888764 456678888888888888887755455555 78888888887752 33 22
Q ss_pred hcCCCCCCEEE
Q 003193 321 IGQLTCLKLLD 331 (840)
Q Consensus 321 i~~L~~L~~L~ 331 (840)
+..+++|+.||
T Consensus 247 l~~~P~L~~LD 257 (267)
T 3rw6_A 247 RERFPKLLRLD 257 (267)
T ss_dssp HHHCTTCCEES
T ss_pred HHHCcccCeEC
Confidence 55667777665
|
| >2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=97.78 E-value=1.1e-05 Score=85.11 Aligned_cols=128 Identities=16% Similarity=0.166 Sum_probs=83.6
Q ss_pred CCCcceeEeeccCccccCCCchhhcCCCCCcEEEcCCCCCCC-CChhhc--CCCCCCEEEccCC--c-cCC--c----cc
Q 003193 230 GFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHS-LPSSLG--CLINLRTLSLENC--L-VVD--V----AI 297 (840)
Q Consensus 230 ~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~-lp~~l~--~l~~L~~L~L~~~--~-~~~--~----~~ 297 (840)
.+|+|+.|.+.++... .++. + .+++|+.|++..+.+.. ....+. .+++|++|+|+.+ . ... . ..
T Consensus 170 ~~P~L~~L~L~g~~~l-~l~~-~--~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~ 245 (362)
T 2ra8_A 170 AMPLLNNLKIKGTNNL-SIGK-K--PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPL 245 (362)
T ss_dssp TCTTCCEEEEECCBTC-BCCS-C--BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGG
T ss_pred cCCCCcEEEEeCCCCc-eecc-c--cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHH
Confidence 5788999999876322 3343 2 37889999998877652 112333 7889999998632 1 111 1 11
Q ss_pred c--cCCCCCCEEeecCCCCcc-cChhh---cCCCCCCEEEccCCCCCCc-----cCcccccCCCCCcEEEccCCccc
Q 003193 298 I--GDLKKLEILSLKHSSIEQ-LPREI---GQLTCLKLLDLSNCSKLKE-----IRPNVISNLTRLEELYMGNSFTQ 363 (840)
Q Consensus 298 i--~~L~~L~~L~l~~~~l~~-lp~~i---~~L~~L~~L~L~~~~~l~~-----~p~~~l~~L~~L~~L~l~~~~~~ 363 (840)
+ +.+++|++|++.+|.+.. .+..+ ..+++|++|+|+. +.++. ++.+ +.++++|+.|++++|.+.
T Consensus 246 l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~-n~L~d~G~~~L~~~-L~~l~~L~~L~L~~n~i~ 320 (362)
T 2ra8_A 246 FSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISA-GVLTDEGARLLLDH-VDKIKHLKFINMKYNYLS 320 (362)
T ss_dssp SCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCS-SCCBHHHHHHHHTT-HHHHTTCSEEECCSBBCC
T ss_pred HhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCC-CCCChHHHHHHHhh-cccCCcceEEECCCCcCC
Confidence 2 357899999999887762 22222 3578999999987 55655 2222 356789999999988654
|
| >1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1 | Back alignment and structure |
|---|
Probab=97.74 E-value=1.5e-05 Score=75.45 Aligned_cols=105 Identities=14% Similarity=0.141 Sum_probs=72.5
Q ss_pred CCcceeEeeccC-ccccC---CCchhhcCCCCCcEEEcCCCCCCC-----CChhhcCCCCCCEEEccCCccCC------c
Q 003193 231 FLKLKLFLFFTE-NLSLQ---IPDPFFEGMTELRVLDLTGFRFHS-----LPSSLGCLINLRTLSLENCLVVD------V 295 (840)
Q Consensus 231 ~~~L~~L~l~~~-~~~~~---~~~~~~~~l~~Lr~L~l~~~~~~~-----lp~~l~~l~~L~~L~L~~~~~~~------~ 295 (840)
.+.|++|++++| .+... .....+...++|++|+|++|.+.. +...+...++|++|+|++|.+.+ .
T Consensus 35 ~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~ 114 (185)
T 1io0_A 35 DPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALV 114 (185)
T ss_dssp CTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHH
T ss_pred CCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHH
Confidence 455555555555 43211 011223566788888888888763 45566677889999999998876 2
Q ss_pred ccccCCCCCCEEee--cCCCCcc-----cChhhcCCCCCCEEEccCC
Q 003193 296 AIIGDLKKLEILSL--KHSSIEQ-----LPREIGQLTCLKLLDLSNC 335 (840)
Q Consensus 296 ~~i~~L~~L~~L~l--~~~~l~~-----lp~~i~~L~~L~~L~L~~~ 335 (840)
..+...++|++|++ ++|.+.. +...+...++|++|++++|
T Consensus 115 ~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n 161 (185)
T 1io0_A 115 EALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFT 161 (185)
T ss_dssp HGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCS
T ss_pred HHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCC
Confidence 45667788999999 7788773 5566677789999999884
|
| >3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A | Back alignment and structure |
|---|
Probab=97.58 E-value=1.1e-05 Score=80.39 Aligned_cols=79 Identities=23% Similarity=0.291 Sum_probs=49.9
Q ss_pred cCCCCCCEEEccCCccCCc----ccccCCCCCCEEeecCCCCcccChhhcCCC--CCCEEEccCCCCCCccCc------c
Q 003193 277 GCLINLRTLSLENCLVVDV----AIIGDLKKLEILSLKHSSIEQLPREIGQLT--CLKLLDLSNCSKLKEIRP------N 344 (840)
Q Consensus 277 ~~l~~L~~L~L~~~~~~~~----~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~--~L~~L~L~~~~~l~~~p~------~ 344 (840)
.++++|++|+|++|.+... ..++.+++|++|+|++|.++.+ ..+..+. +|++|++++|.--..+|. .
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~-~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~ 245 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE-RELDKIKGLKLEELWLDGNSLCDTFRDQSTYISA 245 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG-GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHH
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc-hhhhhcccCCcceEEccCCcCccccCcchhHHHH
Confidence 4677888888888887762 3445777888888888777766 2344444 777777777432233331 2
Q ss_pred cccCCCCCcEEE
Q 003193 345 VISNLTRLEELY 356 (840)
Q Consensus 345 ~l~~L~~L~~L~ 356 (840)
.+..+++|+.|+
T Consensus 246 il~~~P~L~~LD 257 (267)
T 3rw6_A 246 IRERFPKLLRLD 257 (267)
T ss_dssp HHHHCTTCCEES
T ss_pred HHHHCcccCeEC
Confidence 245566666665
|
| >4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165} | Back alignment and structure |
|---|
Probab=97.50 E-value=0.0037 Score=67.04 Aligned_cols=120 Identities=11% Similarity=0.181 Sum_probs=65.3
Q ss_pred cceeEeeccCccccCCCchhhcCCCCCcEEEcCCCC---CCCCC-hhhcCCCCCCEEEccCCccCC--cccccCCCCCCE
Q 003193 233 KLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFR---FHSLP-SSLGCLINLRTLSLENCLVVD--VAIIGDLKKLEI 306 (840)
Q Consensus 233 ~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~---~~~lp-~~l~~l~~L~~L~L~~~~~~~--~~~i~~L~~L~~ 306 (840)
.|+.+.+..+ ...+....|.++.+|+.+.+..+. ++.++ .+|.++.+|+.+.+..+ +.. ...+..+.+|+.
T Consensus 65 ~L~sI~iP~s--vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF~~c~~L~~ 141 (394)
T 4gt6_A 65 VLTSVQIPDT--VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSEAFHHCEELDT 141 (394)
T ss_dssp CCCEEEECTT--CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTTTTTTCTTCCE
T ss_pred cCEEEEECCC--eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhhhhhhhccccc
Confidence 3556655432 224555556667777777666542 33332 34556666666655443 222 345566677777
Q ss_pred EeecCCCCcccC-hhhcCCCCCCEEEccCCCCCCccCcccccCCCCCcEEEccC
Q 003193 307 LSLKHSSIEQLP-REIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGN 359 (840)
Q Consensus 307 L~l~~~~l~~lp-~~i~~L~~L~~L~L~~~~~l~~~p~~~l~~L~~L~~L~l~~ 359 (840)
+.+..+ ++.++ ..+..+.+|+.+.+.. .+..+....+.. .+|+.+.+..
T Consensus 142 i~lp~~-~~~I~~~~F~~c~~L~~i~~~~--~~~~I~~~aF~~-~~l~~i~ip~ 191 (394)
T 4gt6_A 142 VTIPEG-VTSVADGMFSYCYSLHTVTLPD--SVTAIEERAFTG-TALTQIHIPA 191 (394)
T ss_dssp EECCTT-CCEECTTTTTTCTTCCEEECCT--TCCEECTTTTTT-CCCSEEEECT
T ss_pred ccccce-eeeecccceecccccccccccc--eeeEeccccccc-cceeEEEECC
Confidence 777543 34443 2355666777777654 355555554433 4566666544
|
| >4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165} | Back alignment and structure |
|---|
Probab=97.26 E-value=0.023 Score=60.79 Aligned_cols=110 Identities=11% Similarity=0.161 Sum_probs=71.5
Q ss_pred CCCchhhcCCC-CCcEEEcCCCCCCCC-ChhhcCCCCCCEEEccCCc---cCC--cccccCCCCCCEEeecCCCCcccCh
Q 003193 247 QIPDPFFEGMT-ELRVLDLTGFRFHSL-PSSLGCLINLRTLSLENCL---VVD--VAIIGDLKKLEILSLKHSSIEQLPR 319 (840)
Q Consensus 247 ~~~~~~~~~l~-~Lr~L~l~~~~~~~l-p~~l~~l~~L~~L~L~~~~---~~~--~~~i~~L~~L~~L~l~~~~l~~lp~ 319 (840)
.+.+..|.+++ .|+.+.+..+ ++.+ ..+|.++.+|+.+.+..+. ++. ...|..+.+|+.+.+..+ ++.++.
T Consensus 53 ~Ig~~aF~~~~~~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~ 130 (394)
T 4gt6_A 53 KIGDRVFCNYKYVLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDS 130 (394)
T ss_dssp EECTTTTTTCCSCCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECT
T ss_pred EcCHhhccCCCCcCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehh
Confidence 34555566664 4777777653 5555 3457778888888887653 333 345667777777776553 555543
Q ss_pred -hhcCCCCCCEEEccCCCCCCccCcccccCCCCCcEEEccCC
Q 003193 320 -EIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGNS 360 (840)
Q Consensus 320 -~i~~L~~L~~L~L~~~~~l~~~p~~~l~~L~~L~~L~l~~~ 360 (840)
.+..+.+|+.+.+.. .+..++...+..+.+|+.+.+..+
T Consensus 131 ~aF~~c~~L~~i~lp~--~~~~I~~~~F~~c~~L~~i~~~~~ 170 (394)
T 4gt6_A 131 EAFHHCEELDTVTIPE--GVTSVADGMFSYCYSLHTVTLPDS 170 (394)
T ss_dssp TTTTTCTTCCEEECCT--TCCEECTTTTTTCTTCCEEECCTT
T ss_pred hhhhhhcccccccccc--eeeeecccceecccccccccccce
Confidence 356777888888764 456666666777888888877654
|
| >4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum} | Back alignment and structure |
|---|
Probab=96.40 E-value=0.14 Score=54.22 Aligned_cols=122 Identities=9% Similarity=0.088 Sum_probs=67.0
Q ss_pred CCCcceeEeeccCccccCCCchhhcCCCCCcEEEcCCCCCCCCC-hhhcCCCCCCEEEccCCccCC--cccccCCCCCCE
Q 003193 230 GFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLP-SSLGCLINLRTLSLENCLVVD--VAIIGDLKKLEI 306 (840)
Q Consensus 230 ~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp-~~l~~l~~L~~L~L~~~~~~~--~~~i~~L~~L~~ 306 (840)
...+|+.+.+... ...+++..|.++.+|+.+++..+ ++.++ .+|.++ .|+.+.+..+ +.. ...+.. .+|+.
T Consensus 44 ~~~~i~~v~ip~~--vt~Ig~~aF~~C~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~~~-l~~I~~~aF~~-~~L~~ 117 (379)
T 4h09_A 44 DRDRISEVRVNSG--ITSIGEANFNSCYNMTKVTVAST-VTSIGDGAFADT-KLQSYTGMER-VKKFGDYVFQG-TDLDD 117 (379)
T ss_dssp GGGGCSEEEECTT--EEEECTTTTTTCTTCCEEEECTT-CCEECTTTTTTC-CCCEEEECTT-CCEECTTTTTT-CCCSE
T ss_pred cccCCEEEEeCCC--ccChHHHHhhCCCCCCEEEeCCc-ceEechhhhcCC-CCceEECCce-eeEeccceecc-CCccc
Confidence 3456666666432 22466666777888888887643 55553 335554 5666665432 222 222333 36777
Q ss_pred EeecCCCCcccChhhcCCCCCCEEEccCCCCCCccCcccccCCCCCcEEEccCC
Q 003193 307 LSLKHSSIEQLPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGNS 360 (840)
Q Consensus 307 L~l~~~~l~~lp~~i~~L~~L~~L~L~~~~~l~~~p~~~l~~L~~L~~L~l~~~ 360 (840)
+.+..+ ++.+....-.-.+|....+.. .+..+....+....+++...+...
T Consensus 118 i~lp~~-~~~i~~~~F~~~~l~~~~~~~--~v~~i~~~~f~~~~~l~~~~~~~~ 168 (379)
T 4h09_A 118 FEFPGA-TTEIGNYIFYNSSVKRIVIPK--SVTTIKDGIGYKAENLEKIEVSSN 168 (379)
T ss_dssp EECCTT-CCEECTTTTTTCCCCEEEECT--TCCEECSCTTTTCTTCCEEEECTT
T ss_pred ccCCCc-cccccccccccceeeeeeccc--eeeccccchhcccccccccccccc
Confidence 777653 444443332333566665543 455555555667777777766543
|
| >4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum} | Back alignment and structure |
|---|
Probab=95.29 E-value=0.087 Score=55.86 Aligned_cols=103 Identities=15% Similarity=0.252 Sum_probs=53.1
Q ss_pred hcCCCCCcEEEcCCCCCCCC-ChhhcCCCCCCEEEccCCccCC--cccccCCCCCCEEeecCCCCcccCh-hhcCCCCCC
Q 003193 253 FEGMTELRVLDLTGFRFHSL-PSSLGCLINLRTLSLENCLVVD--VAIIGDLKKLEILSLKHSSIEQLPR-EIGQLTCLK 328 (840)
Q Consensus 253 ~~~l~~Lr~L~l~~~~~~~l-p~~l~~l~~L~~L~L~~~~~~~--~~~i~~L~~L~~L~l~~~~l~~lp~-~i~~L~~L~ 328 (840)
+.....|+.+.+..+ +..+ ...+.++..|+.+.+..+ ++. ...+.++.+|+.+.+.. +++.++. .+..+++|+
T Consensus 213 f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~-~i~~i~~~aF~~c~~L~ 289 (379)
T 4h09_A 213 FSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYA-KVKTVPYLLCSGCSNLT 289 (379)
T ss_dssp TTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECC-CCSEECTTTTTTCTTCC
T ss_pred cccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhccccccc-cceeccccccccccccc
Confidence 344555555555433 2222 233455556666665443 222 34455556666666543 2444442 345566666
Q ss_pred EEEccCCCCCCccCcccccCCCCCcEEEccC
Q 003193 329 LLDLSNCSKLKEIRPNVISNLTRLEELYMGN 359 (840)
Q Consensus 329 ~L~L~~~~~l~~~p~~~l~~L~~L~~L~l~~ 359 (840)
.+.+.+ +.++.++...|.++.+|+.+.+..
T Consensus 290 ~i~l~~-~~i~~I~~~aF~~c~~L~~i~lp~ 319 (379)
T 4h09_A 290 KVVMDN-SAIETLEPRVFMDCVKLSSVTLPT 319 (379)
T ss_dssp EEEECC-TTCCEECTTTTTTCTTCCEEECCT
T ss_pred cccccc-cccceehhhhhcCCCCCCEEEcCc
Confidence 666654 445555555566666666666543
|
| >3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A* | Back alignment and structure |
|---|
Probab=94.81 E-value=0.041 Score=47.94 Aligned_cols=54 Identities=17% Similarity=0.276 Sum_probs=40.3
Q ss_pred EEeecCCCCc--ccChhhcCCCCCCEEEccCCCCCCccCcccccCCCCCcEEEccCCcc
Q 003193 306 ILSLKHSSIE--QLPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGNSFT 362 (840)
Q Consensus 306 ~L~l~~~~l~--~lp~~i~~L~~L~~L~L~~~~~l~~~p~~~l~~L~~L~~L~l~~~~~ 362 (840)
.++-++++++ .+|..+. .+|++|+|++ |.+..+|.+.+..+++|++|++.+|..
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~-N~l~~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFP--VDTTELVLTG-NNLTALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp EEECCSSCCCTTTSCSCCC--TTCSEEECTT-SCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred EEEeCCCCCccccCCCCCC--cCCCEEECCC-CcCCccChhhhhhccccCEEEecCCCe
Confidence 5666777777 7775432 4688888888 678888887778888888888887754
|
| >3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A* | Back alignment and structure |
|---|
Probab=94.69 E-value=0.047 Score=47.58 Aligned_cols=14 Identities=36% Similarity=0.354 Sum_probs=6.0
Q ss_pred CcEEEcCCCCCCCC
Q 003193 259 LRVLDLTGFRFHSL 272 (840)
Q Consensus 259 Lr~L~l~~~~~~~l 272 (840)
|++|+|++|.++.+
T Consensus 33 l~~L~Ls~N~l~~l 46 (130)
T 3rfe_A 33 TTELVLTGNNLTAL 46 (130)
T ss_dssp CSEEECTTSCCSSC
T ss_pred CCEEECCCCcCCcc
Confidence 44444444444444
|
| >1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1 | Back alignment and structure |
|---|
Probab=94.10 E-value=0.036 Score=51.87 Aligned_cols=81 Identities=20% Similarity=0.270 Sum_probs=45.1
Q ss_pred cCCCCCcEEEcCCC-CCC-----CCChhhcCCCCCCEEEccCCccCC--cc----cccCCCCCCEEeecCCCCc-----c
Q 003193 254 EGMTELRVLDLTGF-RFH-----SLPSSLGCLINLRTLSLENCLVVD--VA----IIGDLKKLEILSLKHSSIE-----Q 316 (840)
Q Consensus 254 ~~l~~Lr~L~l~~~-~~~-----~lp~~l~~l~~L~~L~L~~~~~~~--~~----~i~~L~~L~~L~l~~~~l~-----~ 316 (840)
.+-+.|+.|+|+++ .+. .+-+.+..-.+|+.|+|++|.+.+ .. .+..=+.|++|+|++|.|. .
T Consensus 38 ~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~a 117 (197)
T 1pgv_A 38 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLAR 117 (197)
T ss_dssp TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHH
T ss_pred hcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHH
Confidence 34456666777664 543 133445555667777777776665 12 2223455666666666665 2
Q ss_pred cChhhcCCCCCCEEEccC
Q 003193 317 LPREIGQLTCLKLLDLSN 334 (840)
Q Consensus 317 lp~~i~~L~~L~~L~L~~ 334 (840)
+-..+..=+.|++|+|++
T Consensus 118 la~aL~~N~tL~~L~L~n 135 (197)
T 1pgv_A 118 LLRSTLVTQSIVEFKADN 135 (197)
T ss_dssp HHHHTTTTCCCSEEECCC
T ss_pred HHHHHhhCCceeEEECCC
Confidence 333344445566666664
|
| >1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A* | Back alignment and structure |
|---|
Probab=92.25 E-value=0.69 Score=49.36 Aligned_cols=151 Identities=13% Similarity=0.023 Sum_probs=86.8
Q ss_pred EEccCCCHHHHHHHHHHHh---CCCCCCCchhhHHHHHHHHhC------CCchhHHHHHHHh---c---CC---CHHHHH
Q 003193 10 FLDWLLSNEEASHLFEKIV---GHSAKKSDFETIGVEIVAKCG------GLPIAIKTIANAL---K---NK---SPRIWK 71 (840)
Q Consensus 10 ~~l~~L~~~~s~~Lf~~~a---~~~~~~~~~~~i~~~i~~~c~------GlPLai~~~g~~L---~---~~---~~~~W~ 71 (840)
+++++++.+|++++|...+ |.... --.+..+.|+++|+ |.|..+..+.... + +. +.+.+.
T Consensus 210 i~l~~l~~~e~~~ll~~~~~~~~~~~~--~~~~~~~~i~~~~~~~~~~~G~p~~~~~l~~~a~~~a~~~~~~~i~~~~v~ 287 (412)
T 1w5s_A 210 LHLPAYKSRELYTILEQRAELGLRDTV--WEPRHLELISDVYGEDKGGDGSARRAIVALKMACEMAEAMGRDSLSEDLVR 287 (412)
T ss_dssp EECCCCCHHHHHHHHHHHHHHHBCTTS--CCHHHHHHHHHHHCGGGTSCCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHH
T ss_pred eeeCCCCHHHHHHHHHHHHHhcCCCCC--CChHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHHcCCCCCCHHHHH
Confidence 8999999999999997653 43211 11467888999999 9997665554322 1 11 445555
Q ss_pred HHHHHhhcCCCCCcccccccccceeecccccCchhhhhHHHhccCCC--CCCccCHHHHHHHHhhc--cccc-ccchHHH
Q 003193 72 DAVNQLSNSNPRKIQGMDADLSSIELSYEFLKCKEVKSLFQLCGLLK--DGSRIAVDDLLRYVMGL--RLLT-NADTLEA 146 (840)
Q Consensus 72 ~~l~~l~~~~~~~~~~~~~~~~~l~lSY~~L~~~~lk~cfl~~~~fp--~~~~i~~~~li~~wia~--gfi~-~~~~~~~ 146 (840)
.++..... ...+.-+++.||.+ .+.++..++.+. .+..+...++...+... .... ..-+
T Consensus 288 ~~~~~~~~------------~~~~~~~l~~l~~~-~~~~l~aia~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 351 (412)
T 1w5s_A 288 KAVSENEA------------ASIQTHELEALSIH-ELIILRLIAEATLGGMEWINAGLLRQRYEDASLTMYNVKPRG--- 351 (412)
T ss_dssp HHHHHC------------------CCSSSSSCHH-HHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHHHHHSCCCCCC---
T ss_pred HHHHHHhc------------cchHHHHHHcCCHH-HHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHhhcCCCCCC---
Confidence 55553210 12255578889987 888888888654 23356666665544211 1111 0001
Q ss_pred HHHHHHHHHHHHhhccccccC----CCCCceEeehhH
Q 003193 147 ARNRVHTLIDNLKSASLLFDG----DSEDHAKMHRII 179 (840)
Q Consensus 147 ~~~~~~~~~~~L~~~~l~~~~----~~~~~~~mhdli 179 (840)
...+.+++++|.+.+++... ++.+.+++|++.
T Consensus 352 -~~~~~~~l~~L~~~gli~~~~~~~~~~g~~~~~~l~ 387 (412)
T 1w5s_A 352 -YTQYHIYLKHLTSLGLVDAKPSGRGMRGRTTLFRLA 387 (412)
T ss_dssp -HHHHHHHHHHHHHTTSEEEECC-------CCEEEEC
T ss_pred -HHHHHHHHHHHHhCCCEEeecccCCCCCceeEEEeC
Confidence 12234578999999998643 234456666655
|
| >1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1 | Back alignment and structure |
|---|
Probab=91.94 E-value=0.12 Score=48.33 Aligned_cols=81 Identities=11% Similarity=0.073 Sum_probs=53.7
Q ss_pred cCCCCCcEEEcCCCCCC-----CCChhhcCCCCCCEEEccCCccCC--c----ccccCCCCCCEEeecCCCC---c----
Q 003193 254 EGMTELRVLDLTGFRFH-----SLPSSLGCLINLRTLSLENCLVVD--V----AIIGDLKKLEILSLKHSSI---E---- 315 (840)
Q Consensus 254 ~~l~~Lr~L~l~~~~~~-----~lp~~l~~l~~L~~L~L~~~~~~~--~----~~i~~L~~L~~L~l~~~~l---~---- 315 (840)
..-..|+.|+|++|.+. .+-+.+..-+.|++|+|++|.+.. . ..+..=+.|++|+|+++.. .
T Consensus 67 ~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~ 146 (197)
T 1pgv_A 67 CNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVE 146 (197)
T ss_dssp TTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHH
T ss_pred hhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHH
Confidence 45567888888888876 244556666788888888888876 1 3445556688999876532 2
Q ss_pred -ccChhhcCCCCCCEEEccC
Q 003193 316 -QLPREIGQLTCLKLLDLSN 334 (840)
Q Consensus 316 -~lp~~i~~L~~L~~L~L~~ 334 (840)
.+...+..=+.|+.|+++.
T Consensus 147 ~~ia~aL~~N~tL~~L~l~~ 166 (197)
T 1pgv_A 147 MDMMMAIEENESLLRVGISF 166 (197)
T ss_dssp HHHHHHHHHCSSCCEEECCC
T ss_pred HHHHHHHHhCCCcCeEeccC
Confidence 2333445556777777765
|
| >2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20 | Back alignment and structure |
|---|
Probab=89.79 E-value=0.83 Score=47.52 Aligned_cols=146 Identities=11% Similarity=0.081 Sum_probs=84.4
Q ss_pred ceEEccCCCHHHHHHHHHHHhCC-CCCCCchhhHHHHHHHHhCCCchhHHHHHHHhcC-CCHHHHHH-HHHHhhcCCCCC
Q 003193 8 EDFLDWLLSNEEASHLFEKIVGH-SAKKSDFETIGVEIVAKCGGLPIAIKTIANALKN-KSPRIWKD-AVNQLSNSNPRK 84 (840)
Q Consensus 8 ~~~~l~~L~~~~s~~Lf~~~a~~-~~~~~~~~~i~~~i~~~c~GlPLai~~~g~~L~~-~~~~~W~~-~l~~l~~~~~~~ 84 (840)
..+++.+|+.+|+.+++...+.. ....+. . .+|+++|+|.|+++..++..+.. .+...|-. +.+....
T Consensus 202 ~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~---~-~~i~~~t~G~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~----- 272 (357)
T 2fna_A 202 STVELKPFSREEAIEFLRRGFQEADIDFKD---Y-EVVYEKIGGIPGWLTYFGFIYLDNKNLDFAINQTLEYAKK----- 272 (357)
T ss_dssp EEEEECCCCHHHHHHHHHHHHHHHTCCCCC---H-HHHHHHHCSCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH-----
T ss_pred ceeecCCCCHHHHHHHHHHHHHHcCCCCCc---H-HHHHHHhCCCHHHHHHHHHHHccccchHHHHHHHHHHHHH-----
Confidence 57999999999999999875421 111222 2 88999999999999999988752 34433421 1111000
Q ss_pred cccccccccceeecc--cccCchhhhhHHHhccCCCCCCccCHHHHHHHHh-hccc-ccccchHHHHHHHHHHHHHHHhh
Q 003193 85 IQGMDADLSSIELSY--EFLKCKEVKSLFQLCGLLKDGSRIAVDDLLRYVM-GLRL-LTNADTLEAARNRVHTLIDNLKS 160 (840)
Q Consensus 85 ~~~~~~~~~~l~lSY--~~L~~~~lk~cfl~~~~fp~~~~i~~~~li~~wi-a~gf-i~~~~~~~~~~~~~~~~~~~L~~ 160 (840)
.+...+ -.+.| ..||+. .+..+..+|. +. +...+....- ..|. + +. ..+.++++.|.+
T Consensus 273 --~~~~~l--~~~~~~~~~l~~~-~~~~l~~la~---g~--~~~~l~~~~~~~~g~~~----~~----~~~~~~L~~L~~ 334 (357)
T 2fna_A 273 --LILKEF--ENFLHGREIARKR-YLNIMRTLSK---CG--KWSDVKRALELEEGIEI----SD----SEIYNYLTQLTK 334 (357)
T ss_dssp --HHHHHH--HHHHTTCGGGHHH-HHHHHHHHTT---CB--CHHHHHHHHHHHHCSCC----CH----HHHHHHHHHHHH
T ss_pred --HHHHHH--HHHhhccccccHH-HHHHHHHHHc---CC--CHHHHHHHHHHhcCCCC----CH----HHHHHHHHHHHh
Confidence 000000 01111 157776 8888888887 21 4455543211 1121 1 11 123457899999
Q ss_pred ccccccCCCCCceE-eehhHHHH
Q 003193 161 ASLLFDGDSEDHAK-MHRIIHAI 182 (840)
Q Consensus 161 ~~l~~~~~~~~~~~-mhdli~~l 182 (840)
.+++...+ +.|+ .|.++++.
T Consensus 335 ~gli~~~~--~~y~f~~~~~~~~ 355 (357)
T 2fna_A 335 HSWIIKEG--EKYCPSEPLISLA 355 (357)
T ss_dssp TTSEEESS--SCEEESSHHHHHH
T ss_pred CCCEEecC--CEEEecCHHHHHh
Confidence 99987643 4566 46677654
|
| >1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C* | Back alignment and structure |
|---|
Probab=80.51 E-value=1.9 Score=44.03 Aligned_cols=69 Identities=12% Similarity=-0.039 Sum_probs=47.8
Q ss_pred CceEEccCCCHHHHHHHHHHHhCCCCCCCchhhHHHHHHHHhCCCchhHHHHHHHhc-------C-C-CHHHHHHHHHH
Q 003193 7 SEDFLDWLLSNEEASHLFEKIVGHSAKKSDFETIGVEIVAKCGGLPIAIKTIANALK-------N-K-SPRIWKDAVNQ 76 (840)
Q Consensus 7 ~~~~~l~~L~~~~s~~Lf~~~a~~~~~~~~~~~i~~~i~~~c~GlPLai~~~g~~L~-------~-~-~~~~W~~~l~~ 76 (840)
...+.+.+++.+|..+++.+.+......- -.+..+.+++++.|.|-.+..+...+. . . +.+....++..
T Consensus 160 ~~~i~l~~~~~~e~~~~l~~~~~~~~~~~-~~~~~~~l~~~~~G~~r~l~~~l~~~~~~a~~~~~~~i~~~~~~~~~~~ 237 (324)
T 1hqc_A 160 GIVEHLEYYTPEELAQGVMRDARLLGVRI-TEEAALEIGRRSRGTMRVAKRLFRRVRDFAQVAGEEVITRERALEALAA 237 (324)
T ss_dssp SCEEECCCCCHHHHHHHHHHHHHTTTCCC-CHHHHHHHHHHSCSCHHHHHHHHHHHTTTSTTTSCSCCCHHHHHHHHHH
T ss_pred cEEEecCCCCHHHHHHHHHHHHHhcCCCC-CHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Confidence 35799999999999999988774221111 146778899999999988877665542 1 1 45555555554
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 840 | ||||
| d2a5yb3 | 277 | c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenor | 1e-09 | |
| d2omza2 | 384 | c.10.2.1 (A:33-416) Internalin A {Listeria monocyt | 7e-09 | |
| d2omza2 | 384 | c.10.2.1 (A:33-416) Internalin A {Listeria monocyt | 7e-05 | |
| d1jl5a_ | 353 | c.10.2.6 (A:) Leucine rich effector protein YopM { | 3e-06 | |
| d1jl5a_ | 353 | c.10.2.6 (A:) Leucine rich effector protein YopM { | 3e-05 | |
| d1dcea3 | 124 | c.10.2.2 (A:444-567) Rab geranylgeranyltransferase | 8e-06 | |
| d1a9na_ | 162 | c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom | 5e-05 | |
| d2astb2 | 284 | c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1 | 2e-04 | |
| d1z7xw1 | 460 | c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human ( | 3e-04 | |
| d1xwdc1 | 242 | c.10.2.7 (C:18-259) Follicle-stimulating hormone r | 0.001 | |
| d1m9la_ | 198 | c.10.3.1 (A:) Outer arm dynein light chain 1 {Gree | 0.001 | |
| d1koha1 | 162 | c.10.2.3 (A:201-362) mRNA export factor tap {Human | 0.001 | |
| d2ifga3 | 156 | c.10.2.7 (A:36-191) High affinity nerve growth fac | 0.002 | |
| d1h6ua2 | 227 | c.10.2.1 (A:36-262) Internalin H {Listeria monocyt | 0.004 |
| >d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]} Length = 277 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CED-4, NB-ARC domain species: Caenorhabditis elegans [TaxId: 6239]
Score = 57.9 bits (139), Expect = 1e-09
Identities = 12/88 (13%), Positives = 25/88 (28%), Gaps = 6/88 (6%)
Query: 15 LSNEEASHLFEKIVGHSAKKSDFETIGVEIVAKCGGLPIAIKTIANALKNKSPRIWKDAV 74
L +E E E + + + G P + + + K+
Sbjct: 185 LEIDECYDFLEAYGMPMPVGEKEEDVLNKTIELSSGNPATLMMFFKSCEPKTFEKMAQLN 244
Query: 75 NQLSNSNPRKIQGMDADLSSIELSYEFL 102
N+L + ++ SY+ L
Sbjct: 245 NKLESRGLVGVE------CITPYSYKSL 266
|
| >d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin A species: Listeria monocytogenes [TaxId: 1639]
Score = 56.2 bits (134), Expect = 7e-09
Identities = 29/166 (17%), Positives = 63/166 (37%), Gaps = 28/166 (16%)
Query: 215 ISIPFRGIYELPERLGFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPS 274
+S+ + ++ L +S P G+T+L L L + ++
Sbjct: 224 LSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAP---LSGLTKLTELKLGANQISNISP 280
Query: 275 SLGC---------------------LINLRTLSLENCLVVDVAIIGDLKKLEILSLKHSS 313
G L NL L+L + D++ + L KL+ L ++
Sbjct: 281 LAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFANNK 340
Query: 314 IEQLPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGN 359
+ + + LT + L + ++ ++ P ++NLTR+ +L + +
Sbjct: 341 VSDVS-SLANLTNINWLSAGHN-QISDLTP--LANLTRITQLGLND 382
|
| >d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin A species: Listeria monocytogenes [TaxId: 1639]
Score = 43.8 bits (102), Expect = 7e-05
Identities = 21/86 (24%), Positives = 35/86 (40%), Gaps = 4/86 (4%)
Query: 279 LINLRTLSLENCLVVDVAIIGDLKKLEILSLKHSSIEQLPREIGQLTCLKLLDLSNCSKL 338
L L V D DL ++ L I+ + + L L ++ SN +L
Sbjct: 21 LAEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSID-GVEYLNNLTQINFSNN-QL 78
Query: 339 KEIRPNVISNLTRLEELYMGNSFTQW 364
+I P + NLT+L ++ M N+
Sbjct: 79 TDITP--LKNLTKLVDILMNNNQIAD 102
|
| >d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Leucine rich effector protein YopM domain: Leucine rich effector protein YopM species: Yersinia pestis [TaxId: 632]
Score = 47.9 bits (112), Expect = 3e-06
Identities = 12/91 (13%), Positives = 33/91 (36%), Gaps = 5/91 (5%)
Query: 239 FFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPSSLGCLINLRTLSLENCLVVDVAII 298
+ N S + L L+++ + LP+ L L + + +
Sbjct: 266 LYYLNASSNEIRSLCDLPPSLEELNVSNNKLIELPALPP---RLERLIASFNHLAE--VP 320
Query: 299 GDLKKLEILSLKHSSIEQLPREIGQLTCLKL 329
+ L+ L ++++ + + P + L++
Sbjct: 321 ELPQNLKQLHVEYNPLREFPDIPESVEDLRM 351
|
| >d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Leucine rich effector protein YopM domain: Leucine rich effector protein YopM species: Yersinia pestis [TaxId: 632]
Score = 44.8 bits (104), Expect = 3e-05
Identities = 14/75 (18%), Positives = 32/75 (42%), Gaps = 7/75 (9%)
Query: 278 CLINLRTLSLENCLVVDVAIIGDLKKLEILSLKHSSIEQLPREIGQLTCLKLLDLSNCSK 337
+L L++ N +++ + +LE L + + ++P LK L +
Sbjct: 282 LPPSLEELNVSNNKLIE--LPALPPRLERLIASFNHLAEVPELPQN---LKQLHVEYN-P 335
Query: 338 LKEIRPNVISNLTRL 352
L+E P++ ++ L
Sbjct: 336 LREF-PDIPESVEDL 349
|
| >d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 43.6 bits (102), Expect = 8e-06
Identities = 32/128 (25%), Positives = 50/128 (39%), Gaps = 6/128 (4%)
Query: 260 RVLDLTGFRFHSLPSSLGCLINLRTLSLE-NCLVVDVAIIGDLKKLEILSLKHSSIEQLP 318
RVL L L L L+ + L L N L + L+ LE+L +++E +
Sbjct: 1 RVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVD 59
Query: 319 REIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYM-GNSFTQWKVEGQSNASLGEL 377
+ L L+ L L N + + + RL L + GNS + EG L
Sbjct: 60 -GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLC--QEEGIQERLAEML 116
Query: 378 KQLSRLTT 385
+S + T
Sbjct: 117 PSVSSILT 124
|
| >d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: U2A'-like domain: Splicesomal U2A' protein species: Human (Homo sapiens) [TaxId: 9606]
Score = 42.2 bits (98), Expect = 5e-05
Identities = 23/147 (15%), Positives = 53/147 (36%), Gaps = 7/147 (4%)
Query: 241 TENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPSSLGCLINLRTLSLENCLVVDVAIIGD 300
T L Q + R LDL G++ + + L + + + +
Sbjct: 4 TAELIEQAAQ--YTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDGFPL 61
Query: 301 LKKLEILSL-KHSSIEQLPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGN 359
L++L+ L + + L L L L+N S ++ + +++L L L +
Sbjct: 62 LRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILR 121
Query: 360 SFTQWKVEGQSNASLGELKQLSRLTTL 386
+ + + L + ++ ++ L
Sbjct: 122 NPVTN----KKHYRLYVIYKVPQVRVL 144
|
| >d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Cyclin A/CDK2-associated p19, Skp2 domain: Cyclin A/CDK2-associated p19, Skp2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 42.0 bits (97), Expect = 2e-04
Identities = 38/265 (14%), Positives = 88/265 (33%), Gaps = 19/265 (7%)
Query: 283 RTLSLENCLVVDVAIIGDLKK-LEILSLKHSSIEQLPREIGQLTCLKLLDLSNCSKLKEI 341
+TL L + L + + S ++Q E ++ +DLSN
Sbjct: 3 QTLDLTGKNLHPDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVST 62
Query: 342 RPNVISNLTRLEELYMGNSFTQWKVEGQSNASLGELKQLSRLTTLEVH------IPDAQV 395
++S ++L+ L + ++ +L + L RL +
Sbjct: 63 LHGILSQCSKLQNLSLEGL----RLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLS 118
Query: 396 MPQDLVFVELERFRICIGDVWSWSDGYETSKTLKLQLNNSTYLGYGMKMLLKRTEDLHLD 455
L + L + + + +L L+ + +L
Sbjct: 119 SCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLV 178
Query: 456 ELAGFKNVVHELDDEEGFAR---LRHLHVHNGPEILHILNSDGRVGTFPLLESLFLHNLI 512
L +V+ + D + F + L+HL + +I+ + +G P L++L + ++
Sbjct: 179 HLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIP--ETLLELGEIPTLKTLQVFGIV 236
Query: 513 N---LEKVCDGKVRLNEDDKSFSNL 534
L+ + + L + F+ +
Sbjct: 237 PDGTLQLLKEALPHLQINCSHFTTI 261
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Score = 41.9 bits (96), Expect = 3e-04
Identities = 12/113 (10%), Positives = 35/113 (30%), Gaps = 23/113 (20%)
Query: 258 ELRVLDLTGFRF--HSLPSSLGCLINLRTLSLENCLVVDVAIIGDLKKLEILSLKHSSIE 315
+++ LD+ L L + + L++C L + +
Sbjct: 3 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDC-----------------GLTEARCK 45
Query: 316 QLPREIGQLTCLKLLDLSNC----SKLKEIRPNVISNLTRLEELYMGNSFTQW 364
+ + L L+L + + + + + ++++L + N
Sbjct: 46 DISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTG 98
|
| >d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Follicle-stimulating hormone receptor species: Human (Homo sapiens) [TaxId: 9606]
Score = 39.5 bits (90), Expect = 0.001
Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Query: 247 QIPDPFFEGMTELRVLDLTGFRFHSLPSS-LGCLINLRTLSLENC 290
++P+ F G + +LD++ R HSLPS L L LR S N
Sbjct: 191 ELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNL 235
|
| >d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]} Length = 198 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: Outer arm dynein light chain 1 family: Outer arm dynein light chain 1 domain: Outer arm dynein light chain 1 species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]
Score = 38.9 bits (89), Expect = 0.001
Identities = 13/58 (22%), Positives = 24/58 (41%), Gaps = 3/58 (5%)
Query: 307 LSLKHSSIEQLPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGNSFTQW 364
L IE++ + L K L LS +++I +S + L L +G + +
Sbjct: 30 LHGMIPPIEKMDATLSTLKACKHLALSTN-NIEKISS--LSGMENLRILSLGRNLIKK 84
|
| >d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} Length = 162 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: mRNA export factor tap domain: mRNA export factor tap species: Human (Homo sapiens) [TaxId: 9606]
Score = 38.3 bits (88), Expect = 0.001
Identities = 28/133 (21%), Positives = 54/133 (40%), Gaps = 8/133 (6%)
Query: 258 ELRVLDLTGFRFHSLPSSLGCLINLRTLSLENCLVVDVAIIGD-LKKLEILSLKHSSI-- 314
+ LDL G R L L+ + + + II + + +L L+L ++ +
Sbjct: 23 SQQALDLKGLRSDP---DLVAQNIDVVLNRRSSMAATLRIIEENIPELLSLNLSNNRLYR 79
Query: 315 -EQLPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGNSFTQWKVEGQSNAS 373
+ + + + LK+L+LS +LK R +LEEL++ + QS
Sbjct: 80 LDDMSSIVQKAPNLKILNLSGN-ELKSERELDKIKGLKLEELWLDGNSLSDTFRDQSTYI 138
Query: 374 LGELKQLSRLTTL 386
++ +L L
Sbjct: 139 SAIRERFPKLLRL 151
|
| >d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 156 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: High affinity nerve growth factor receptor, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 37.8 bits (86), Expect = 0.002
Identities = 9/61 (14%), Positives = 17/61 (27%)
Query: 304 LEILSLKHSSIEQLPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGNSFTQ 363
L + L L + N L+ + + L L L + S +
Sbjct: 10 SSGLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLR 69
Query: 364 W 364
+
Sbjct: 70 F 70
|
| >d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin H species: Listeria monocytogenes [TaxId: 1639]
Score = 37.3 bits (85), Expect = 0.004
Identities = 13/65 (20%), Positives = 27/65 (41%), Gaps = 1/65 (1%)
Query: 247 QIPDPFFEGMTELRVLDLTGFRFHSLPSSLGCLINLRTLSLENCLVVDVAIIGDLKKLEI 306
+++L L + + L L NL + L+N + DV+ + + L I
Sbjct: 163 VSDLTPLANLSKLTTLKADDNKISDISP-LASLPNLIEVHLKNNQISDVSPLANTSNLFI 221
Query: 307 LSLKH 311
++L +
Sbjct: 222 VTLTN 226
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 840 | |||
| d2omza2 | 384 | Internalin A {Listeria monocytogenes [TaxId: 1639] | 99.83 | |
| d2omza2 | 384 | Internalin A {Listeria monocytogenes [TaxId: 1639] | 99.8 | |
| d1xkua_ | 305 | Decorin {Cow (Bos taurus) [TaxId: 9913]} | 99.74 | |
| d1ogqa_ | 313 | Polygalacturonase inhibiting protein PGIP {Kidney | 99.73 | |
| d1ogqa_ | 313 | Polygalacturonase inhibiting protein PGIP {Kidney | 99.7 | |
| d1p9ag_ | 266 | von Willebrand factor binding domain of glycoprote | 99.69 | |
| d2a5yb3 | 277 | CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI | 99.69 | |
| d1ozna_ | 284 | Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma | 99.67 | |
| d1jl5a_ | 353 | Leucine rich effector protein YopM {Yersinia pesti | 99.66 | |
| d1jl5a_ | 353 | Leucine rich effector protein YopM {Yersinia pesti | 99.66 | |
| d1p9ag_ | 266 | von Willebrand factor binding domain of glycoprote | 99.66 | |
| d1xkua_ | 305 | Decorin {Cow (Bos taurus) [TaxId: 9913]} | 99.65 | |
| d2omxa2 | 199 | Internalin B {Listeria monocytogenes [TaxId: 1639] | 99.59 | |
| d1h6ta2 | 210 | Internalin B {Listeria monocytogenes [TaxId: 1639] | 99.58 | |
| d2omxa2 | 199 | Internalin B {Listeria monocytogenes [TaxId: 1639] | 99.58 | |
| d1ozna_ | 284 | Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma | 99.58 | |
| d1h6ua2 | 227 | Internalin H {Listeria monocytogenes [TaxId: 1639] | 99.55 | |
| d1h6ta2 | 210 | Internalin B {Listeria monocytogenes [TaxId: 1639] | 99.55 | |
| d1h6ua2 | 227 | Internalin H {Listeria monocytogenes [TaxId: 1639] | 99.47 | |
| d1dcea3 | 124 | Rab geranylgeranyltransferase alpha-subunit, C-ter | 99.43 | |
| d1dcea3 | 124 | Rab geranylgeranyltransferase alpha-subunit, C-ter | 99.42 | |
| d2astb2 | 284 | Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa | 99.41 | |
| d1a9na_ | 162 | Splicesomal U2A' protein {Human (Homo sapiens) [Ta | 99.38 | |
| d1w8aa_ | 192 | Slit {Fruit fly (Drosophila melanogaster) [TaxId: | 99.37 | |
| d2astb2 | 284 | Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa | 99.36 | |
| d1xwdc1 | 242 | Follicle-stimulating hormone receptor {Human (Homo | 99.36 | |
| d1a9na_ | 162 | Splicesomal U2A' protein {Human (Homo sapiens) [Ta | 99.35 | |
| d1w8aa_ | 192 | Slit {Fruit fly (Drosophila melanogaster) [TaxId: | 99.31 | |
| d1xwdc1 | 242 | Follicle-stimulating hormone receptor {Human (Homo | 99.27 | |
| d1m9la_ | 198 | Outer arm dynein light chain 1 {Green algae (Chlam | 99.09 | |
| d1m9la_ | 198 | Outer arm dynein light chain 1 {Green algae (Chlam | 99.09 | |
| d1z7xw1 | 460 | Ribonuclease inhibitor {Human (Homo sapiens) [TaxI | 99.03 | |
| d2ifga3 | 156 | High affinity nerve growth factor receptor, N-term | 98.87 | |
| d1z7xw1 | 460 | Ribonuclease inhibitor {Human (Homo sapiens) [TaxI | 98.84 | |
| d2ifga3 | 156 | High affinity nerve growth factor receptor, N-term | 98.8 | |
| d2ca6a1 | 344 | Rna1p (RanGAP1), N-terminal domain {Fission yeast | 98.53 | |
| d2ca6a1 | 344 | Rna1p (RanGAP1), N-terminal domain {Fission yeast | 98.22 | |
| d1koha1 | 162 | mRNA export factor tap {Human (Homo sapiens) [TaxI | 97.64 | |
| d1koha1 | 162 | mRNA export factor tap {Human (Homo sapiens) [TaxI | 97.63 | |
| d1pgva_ | 167 | Tropomodulin C-terminal domain {nematode (Caenorha | 96.85 | |
| d1pgva_ | 167 | Tropomodulin C-terminal domain {nematode (Caenorha | 96.63 | |
| d1io0a_ | 166 | Tropomodulin C-terminal domain {Chicken (Gallus ga | 96.29 | |
| d1io0a_ | 166 | Tropomodulin C-terminal domain {Chicken (Gallus ga | 95.87 |
| >d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin A species: Listeria monocytogenes [TaxId: 1639]
Probab=99.83 E-value=6.4e-19 Score=189.29 Aligned_cols=100 Identities=24% Similarity=0.416 Sum_probs=68.4
Q ss_pred CCCCCcEEEcCCCCCCCCChhhcCCCCCCEEEccCCccCCcccccCCCCCCEEeecCCCCcccChhhcCCCCCCEEEccC
Q 003193 255 GMTELRVLDLTGFRFHSLPSSLGCLINLRTLSLENCLVVDVAIIGDLKKLEILSLKHSSIEQLPREIGQLTCLKLLDLSN 334 (840)
Q Consensus 255 ~l~~Lr~L~l~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~L~~ 334 (840)
.+.+|++|+++++.++.+ +.+..+++|++|++++|.+++.+.++++++|++|++++|.++.++. ++++++|+.|++.+
T Consensus 42 ~l~~l~~L~l~~~~I~~l-~gl~~L~nL~~L~Ls~N~l~~l~~l~~L~~L~~L~L~~n~i~~i~~-l~~l~~L~~L~~~~ 119 (384)
T d2omza2 42 DLDQVTTLQADRLGIKSI-DGVEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADITP-LANLTNLTGLTLFN 119 (384)
T ss_dssp HHTTCCEEECCSSCCCCC-TTGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCS
T ss_pred HhCCCCEEECCCCCCCCc-cccccCCCCCEEeCcCCcCCCCccccCCcccccccccccccccccc-cccccccccccccc
Confidence 456778888888877776 3677778888888888877775557777778888887777777654 67777777777766
Q ss_pred CCCCCccCcccccCCCCCcEEEccC
Q 003193 335 CSKLKEIRPNVISNLTRLEELYMGN 359 (840)
Q Consensus 335 ~~~l~~~p~~~l~~L~~L~~L~l~~ 359 (840)
+.+..++. ......+..+....
T Consensus 120 -~~~~~~~~--~~~~~~~~~~~~~~ 141 (384)
T d2omza2 120 -NQITDIDP--LKNLTNLNRLELSS 141 (384)
T ss_dssp -SCCCCCGG--GTTCTTCSEEEEEE
T ss_pred -cccccccc--cccccccccccccc
Confidence 44544443 33445555554443
|
| >d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin A species: Listeria monocytogenes [TaxId: 1639]
Probab=99.80 E-value=2.6e-18 Score=184.41 Aligned_cols=332 Identities=17% Similarity=0.197 Sum_probs=208.0
Q ss_pred CCCcceeEeeccCccccCCCchhhcCCCCCcEEEcCCCCCCCCChhhcCCCCCCEEEccCCccCCcccccCCCCCCEEee
Q 003193 230 GFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPSSLGCLINLRTLSLENCLVVDVAIIGDLKKLEILSL 309 (840)
Q Consensus 230 ~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~~i~~L~~L~~L~l 309 (840)
.+.+|++|.+.++.+. .+ +. +..+++|++|++++|.++.+|+ ++++++|++|++++|.+.....++++++|++|++
T Consensus 42 ~l~~l~~L~l~~~~I~-~l-~g-l~~L~nL~~L~Ls~N~l~~l~~-l~~L~~L~~L~L~~n~i~~i~~l~~l~~L~~L~~ 117 (384)
T d2omza2 42 DLDQVTTLQADRLGIK-SI-DG-VEYLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQIADITPLANLTNLTGLTL 117 (384)
T ss_dssp HHTTCCEEECCSSCCC-CC-TT-GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGGGTTCTTCCEEEC
T ss_pred HhCCCCEEECCCCCCC-Cc-cc-cccCCCCCEEeCcCCcCCCCcc-ccCCcccccccccccccccccccccccccccccc
Confidence 5678999999998875 34 23 4789999999999999999974 9999999999999999998667999999999999
Q ss_pred cCCCCcccChhhcCCCCCCEEEccCCCCCCccCcccccCCCCCcEEEccCCcccc----------eecCCCCCCcccccC
Q 003193 310 KHSSIEQLPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGNSFTQW----------KVEGQSNASLGELKQ 379 (840)
Q Consensus 310 ~~~~l~~lp~~i~~L~~L~~L~L~~~~~l~~~p~~~l~~L~~L~~L~l~~~~~~~----------~~~~~~~~~l~~l~~ 379 (840)
+++.++.++. ......+..+.... +.+..+....................... ...............
T Consensus 118 ~~~~~~~~~~-~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (384)
T d2omza2 118 FNNQITDIDP-LKNLTNLNRLELSS-NTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAK 195 (384)
T ss_dssp CSSCCCCCGG-GTTCTTCSEEEEEE-EEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCCGGGGG
T ss_pred cccccccccc-cccccccccccccc-ccccccccccccccccccccccccchhhhhcccccccccccccccccccccccc
Confidence 9998888765 34556666666554 33333322111111111111111100000 000000112233344
Q ss_pred CCCCCeEEEecCCCCCCCCcccccCcceEEEEEcCccCCCCCccccceEEEeeCCCccchhhHHHHHhcccceeeccccc
Q 003193 380 LSRLTTLEVHIPDAQVMPQDLVFVELERFRICIGDVWSWSDGYETSKTLKLQLNNSTYLGYGMKMLLKRTEDLHLDELAG 459 (840)
Q Consensus 380 l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~ 459 (840)
+++++.+.++.+.+..++.... ..+++.++++++....++. + ..+++|+.|++.++..
T Consensus 196 l~~~~~l~l~~n~i~~~~~~~~--------------------~~~L~~L~l~~n~l~~~~~-l-~~l~~L~~L~l~~n~l 253 (384)
T d2omza2 196 LTNLESLIATNNQISDITPLGI--------------------LTNLDELSLNGNQLKDIGT-L-ASLTNLTDLDLANNQI 253 (384)
T ss_dssp CTTCSEEECCSSCCCCCGGGGG--------------------CTTCCEEECCSSCCCCCGG-G-GGCTTCSEEECCSSCC
T ss_pred ccccceeeccCCccCCCCcccc--------------------cCCCCEEECCCCCCCCcch-h-hcccccchhccccCcc
Confidence 5555666665555444333222 3345555555554444432 1 1257788888887753
Q ss_pred cccccccccchhhcccccEEEeecCCCeEEEEeCCCccccccccceeecccccccccccccccccCCCCcccCCccEEEE
Q 003193 460 FKNVVHELDDEEGFARLRHLHVHNGPEILHILNSDGRVGTFPLLESLFLHNLINLEKVCDGKVRLNEDDKSFSNLRIIKV 539 (840)
Q Consensus 460 ~~~~~~~l~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~~~~~L~~L~l 539 (840)
. .++. + ..+++|++|+++++.- .. ......++.++.+.+.++ .++.+. ....+++++.|++
T Consensus 254 ~-~~~~-~---~~~~~L~~L~l~~~~l-~~----~~~~~~~~~l~~l~~~~n-~l~~~~--------~~~~~~~l~~L~l 314 (384)
T d2omza2 254 S-NLAP-L---SGLTKLTELKLGANQI-SN----ISPLAGLTALTNLELNEN-QLEDIS--------PISNLKNLTYLTL 314 (384)
T ss_dssp C-CCGG-G---TTCTTCSEEECCSSCC-CC----CGGGTTCTTCSEEECCSS-CCSCCG--------GGGGCTTCSEEEC
T ss_pred C-CCCc-c---cccccCCEeeccCccc-CC----CCcccccccccccccccc-cccccc--------ccchhcccCeEEC
Confidence 3 3322 3 6688888888887752 11 123356677777777664 333321 1456788999999
Q ss_pred ecCCCcccccchhHHhhcccccEEEEecccccceeeccccccccccCCccccccccccceeecccCcccccccCCCCCCC
Q 003193 540 EGCHRVKHLFPFSLVKNLLQLQKVKVTDCTNLKLIVGKESENSAHKNGSISGVYFRKLHFLKLQHLPQLTSSGFDLETPT 619 (840)
Q Consensus 540 ~~c~~L~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~c~~L~~~~~~~~~~~ 619 (840)
+++ +++.+++ +..+++|++|++++| .++.++ .+..+++|++|+++++ +++.++.
T Consensus 315 s~n-~l~~l~~---l~~l~~L~~L~L~~n-~l~~l~--------------~l~~l~~L~~L~l~~N-~l~~l~~------ 368 (384)
T d2omza2 315 YFN-NISDISP---VSSLTKLQRLFFANN-KVSDVS--------------SLANLTNINWLSAGHN-QISDLTP------ 368 (384)
T ss_dssp CSS-CCSCCGG---GGGCTTCCEEECCSS-CCCCCG--------------GGGGCTTCCEEECCSS-CCCBCGG------
T ss_pred CCC-CCCCCcc---cccCCCCCEEECCCC-CCCCCh--------------hHcCCCCCCEEECCCC-cCCCChh------
Confidence 876 6677643 477899999999988 455543 3447889999999876 4554322
Q ss_pred ccCCCCCcccccCCCCCcccccccccccCCcceEecccc
Q 003193 620 NTQGSNPGIIAEGDPKDFTSLFNERVVFPSLKKLKLSSI 658 (840)
Q Consensus 620 ~~~~~~l~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c 658 (840)
+..+++|+.|+|++|
T Consensus 369 ------------------------l~~l~~L~~L~L~~N 383 (384)
T d2omza2 369 ------------------------LANLTRITQLGLNDQ 383 (384)
T ss_dssp ------------------------GTTCTTCSEEECCCE
T ss_pred ------------------------hccCCCCCEeeCCCC
Confidence 246889999999876
|
| >d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Decorin species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.74 E-value=6.6e-17 Score=167.07 Aligned_cols=265 Identities=20% Similarity=0.287 Sum_probs=174.2
Q ss_pred cceeEeeccCccccCCCchhhcCCCCCcEEEcCCCCCCCCCh-hhcCCCCCCEEEccCCccCC--cccccCCCCCCEEee
Q 003193 233 KLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPS-SLGCLINLRTLSLENCLVVD--VAIIGDLKKLEILSL 309 (840)
Q Consensus 233 ~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~-~l~~l~~L~~L~L~~~~~~~--~~~i~~L~~L~~L~l 309 (840)
..++++..++.+. .+|..+ .+.+++|++++|+++.+|+ +|.++++|++|++++|.+.. +..+.++++|++|++
T Consensus 11 ~~~~~~C~~~~L~-~lP~~l---~~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l 86 (305)
T d1xkua_ 11 HLRVVQCSDLGLE-KVPKDL---PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYL 86 (305)
T ss_dssp ETTEEECTTSCCC-SCCCSC---CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEEC
T ss_pred cCCEEEecCCCCC-ccCCCC---CCCCCEEECcCCcCCCcChhHhhccccccccccccccccccchhhhhCCCccCEecc
Confidence 3455555555544 667655 2578999999999998876 68899999999999998888 567889999999999
Q ss_pred cCCCCcccChhhcCCCCCCEEEccCCCCCCccCcccccCCCCCcEEEccCCcccceecCCCCCCcccccCCCCCCeEEEe
Q 003193 310 KHSSIEQLPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGNSFTQWKVEGQSNASLGELKQLSRLTTLEVH 389 (840)
Q Consensus 310 ~~~~l~~lp~~i~~L~~L~~L~L~~~~~l~~~p~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~l~~L~~L~l~ 389 (840)
++|+++.+|..+ ...|+.|++.+ +.+..++...+.....++.+....+..... ......+..+++|+.+++.
T Consensus 87 ~~n~l~~l~~~~--~~~l~~L~~~~-n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~-----~~~~~~~~~l~~L~~l~l~ 158 (305)
T d1xkua_ 87 SKNQLKELPEKM--PKTLQELRVHE-NEITKVRKSVFNGLNQMIVVELGTNPLKSS-----GIENGAFQGMKKLSYIRIA 158 (305)
T ss_dssp CSSCCSBCCSSC--CTTCCEEECCS-SCCCBBCHHHHTTCTTCCEEECCSSCCCGG-----GBCTTGGGGCTTCCEEECC
T ss_pred cCCccCcCccch--hhhhhhhhccc-cchhhhhhhhhhcccccccccccccccccc-----CCCccccccccccCccccc
Confidence 999999998653 46888999888 677788777677788888888776643211 1223456777888888888
Q ss_pred cCCCCCCCCcccccCcceEEEEEcCccCCCCCccccceEEEeeCCCccchhhHHHHHhcccceeeccccccccccccccc
Q 003193 390 IPDAQVMPQDLVFVELERFRICIGDVWSWSDGYETSKTLKLQLNNSTYLGYGMKMLLKRTEDLHLDELAGFKNVVHELDD 469 (840)
Q Consensus 390 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~ 469 (840)
.+.+..++... +++|+.|++.++......+..+
T Consensus 159 ~n~l~~l~~~~---------------------------------------------~~~L~~L~l~~n~~~~~~~~~~-- 191 (305)
T d1xkua_ 159 DTNITTIPQGL---------------------------------------------PPSLTELHLDGNKITKVDAASL-- 191 (305)
T ss_dssp SSCCCSCCSSC---------------------------------------------CTTCSEEECTTSCCCEECTGGG--
T ss_pred cCCccccCccc---------------------------------------------CCccCEEECCCCcCCCCChhHh--
Confidence 77766554321 2345555555554444333334
Q ss_pred hhhcccccEEEeecCCCeEEEEeCCCccccccccceeecccccccccccccccccCCCCcccCCccEEEEecCCCccccc
Q 003193 470 EEGFARLRHLHVHNGPEILHILNSDGRVGTFPLLESLFLHNLINLEKVCDGKVRLNEDDKSFSNLRIIKVEGCHRVKHLF 549 (840)
Q Consensus 470 ~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~ 549 (840)
..++.++.|.++++. +..+. ......+++|++|+++++ +++.++.+ ...+++|+.|+++++ +++.++
T Consensus 192 -~~~~~l~~L~~s~n~-l~~~~--~~~~~~l~~L~~L~L~~N-~L~~lp~~-------l~~l~~L~~L~Ls~N-~i~~i~ 258 (305)
T d1xkua_ 192 -KGLNNLAKLGLSFNS-ISAVD--NGSLANTPHLRELHLNNN-KLVKVPGG-------LADHKYIQVVYLHNN-NISAIG 258 (305)
T ss_dssp -TTCTTCCEEECCSSC-CCEEC--TTTGGGSTTCCEEECCSS-CCSSCCTT-------TTTCSSCCEEECCSS-CCCCCC
T ss_pred -hcccccccccccccc-ccccc--cccccccccceeeecccc-cccccccc-------cccccCCCEEECCCC-ccCccC
Confidence 455666666666653 33332 223355666777777664 45554321 345677777777764 466553
Q ss_pred ch-----hHHhhcccccEEEEeccc
Q 003193 550 PF-----SLVKNLLQLQKVKVTDCT 569 (840)
Q Consensus 550 ~~-----~~~~~l~~L~~L~i~~c~ 569 (840)
.. .....+++|+.|++.+++
T Consensus 259 ~~~f~~~~~~~~~~~L~~L~L~~N~ 283 (305)
T d1xkua_ 259 SNDFCPPGYNTKKASYSGVSLFSNP 283 (305)
T ss_dssp TTSSSCSSCCTTSCCCSEEECCSSS
T ss_pred hhhccCcchhcccCCCCEEECCCCc
Confidence 21 122445677777777765
|
| >d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Polygalacturonase inhibiting protein PGIP domain: Polygalacturonase inhibiting protein PGIP species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]
Probab=99.73 E-value=6.4e-18 Score=175.45 Aligned_cols=245 Identities=16% Similarity=0.180 Sum_probs=118.1
Q ss_pred ceeEeeccCcccc--CCCchhhcCCCCCcEEEcCC-CCCC-CCChhhcCCCCCCEEEccCCccCC--cccccCCCCCCEE
Q 003193 234 LKLFLFFTENLSL--QIPDPFFEGMTELRVLDLTG-FRFH-SLPSSLGCLINLRTLSLENCLVVD--VAIIGDLKKLEIL 307 (840)
Q Consensus 234 L~~L~l~~~~~~~--~~~~~~~~~l~~Lr~L~l~~-~~~~-~lp~~l~~l~~L~~L~L~~~~~~~--~~~i~~L~~L~~L 307 (840)
++.|+++++++.+ .+|..+ .++++|++|++++ |.+. .+|++|+++++|++|++++|.+.. +..+..+.+|+++
T Consensus 52 v~~L~L~~~~l~g~~~lp~~l-~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l 130 (313)
T d1ogqa_ 52 VNNLDLSGLNLPKPYPIPSSL-ANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTL 130 (313)
T ss_dssp EEEEEEECCCCSSCEECCGGG-GGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEE
T ss_pred EEEEECCCCCCCCCCCCChHH-hcCccccccccccccccccccccccccccccchhhhccccccccccccccchhhhccc
Confidence 4444444444333 244443 4555555555554 4443 455555555555555555555544 3445555555555
Q ss_pred eecCCCCc-ccChhhcCCCCCCEEEccCCCCCCccCcccccCCCCC-cEEEccCCcccceecCCCCCCcccccCCCCCCe
Q 003193 308 SLKHSSIE-QLPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRL-EELYMGNSFTQWKVEGQSNASLGELKQLSRLTT 385 (840)
Q Consensus 308 ~l~~~~l~-~lp~~i~~L~~L~~L~L~~~~~l~~~p~~~l~~L~~L-~~L~l~~~~~~~~~~~~~~~~l~~l~~l~~L~~ 385 (840)
++++|.+. .+|..++++++|++++++++.....+|.. ++.+.++ +.+++++|.+....+ ..+..+.. ..
T Consensus 131 ~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~-~~~l~~l~~~l~~~~n~l~~~~~-------~~~~~l~~-~~ 201 (313)
T d1ogqa_ 131 DFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDS-YGSFSKLFTSMTISRNRLTGKIP-------PTFANLNL-AF 201 (313)
T ss_dssp ECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGG-GGCCCTTCCEEECCSSEEEEECC-------GGGGGCCC-SE
T ss_pred ccccccccccCchhhccCcccceeeccccccccccccc-ccccccccccccccccccccccc-------cccccccc-cc
Confidence 55555333 44555555555555555553333344443 3444443 455555554332211 22222221 12
Q ss_pred EEEecCCCCCCCCcccccCcceEEEEEcCccCCCCCccccceEEEeeCCCccchhhHHHHHhcccceeeccccccccccc
Q 003193 386 LEVHIPDAQVMPQDLVFVELERFRICIGDVWSWSDGYETSKTLKLQLNNSTYLGYGMKMLLKRTEDLHLDELAGFKNVVH 465 (840)
Q Consensus 386 L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~ 465 (840)
+++..+... +..+........++.+.+..+.....+..+. .+++|+.|++++|.....+|.
T Consensus 202 l~l~~~~~~------------------~~~~~~~~~~~~l~~l~~~~~~l~~~~~~~~-~~~~L~~L~Ls~N~l~g~iP~ 262 (313)
T d1ogqa_ 202 VDLSRNMLE------------------GDASVLFGSDKNTQKIHLAKNSLAFDLGKVG-LSKNLNGLDLRNNRIYGTLPQ 262 (313)
T ss_dssp EECCSSEEE------------------ECCGGGCCTTSCCSEEECCSSEECCBGGGCC-CCTTCCEEECCSSCCEECCCG
T ss_pred ccccccccc------------------ccccccccccccccccccccccccccccccc-cccccccccCccCeecccCCh
Confidence 333322111 0111112222223333333222211111111 146778888888776667777
Q ss_pred cccchhhcccccEEEeecCCCeEEEEeCCCccccccccceeeccccccc
Q 003193 466 ELDDEEGFARLRHLHVHNGPEILHILNSDGRVGTFPLLESLFLHNLINL 514 (840)
Q Consensus 466 ~l~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~~~~L 514 (840)
.+ +.+++|++|++++|. +. +..+..+.+++|+.+.+.+.+.+
T Consensus 263 ~l---~~L~~L~~L~Ls~N~-l~---g~iP~~~~L~~L~~l~l~~N~~l 304 (313)
T d1ogqa_ 263 GL---TQLKFLHSLNVSFNN-LC---GEIPQGGNLQRFDVSAYANNKCL 304 (313)
T ss_dssp GG---GGCTTCCEEECCSSE-EE---EECCCSTTGGGSCGGGTCSSSEE
T ss_pred HH---hCCCCCCEEECcCCc-cc---ccCCCcccCCCCCHHHhCCCccc
Confidence 77 678888888888875 22 22223356677777777765544
|
| >d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Polygalacturonase inhibiting protein PGIP domain: Polygalacturonase inhibiting protein PGIP species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]
Probab=99.70 E-value=2.8e-17 Score=170.49 Aligned_cols=244 Identities=16% Similarity=0.132 Sum_probs=190.0
Q ss_pred cCCCcEEEeccCCcc---cCCccc-CCCcceeEeecc-CccccCCCchhhcCCCCCcEEEcCCCCCCCC-ChhhcCCCCC
Q 003193 209 DEAPTAISIPFRGIY---ELPERL-GFLKLKLFLFFT-ENLSLQIPDPFFEGMTELRVLDLTGFRFHSL-PSSLGCLINL 282 (840)
Q Consensus 209 ~~~l~~L~l~~~~~~---~l~~~~-~~~~L~~L~l~~-~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~l-p~~l~~l~~L 282 (840)
..+++.|+++++.+. .+|..+ .+++|++|++++ |++.+.+|..+ .++++|++|++++|.+..+ |..+..+.+|
T Consensus 49 ~~~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i-~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L 127 (313)
T d1ogqa_ 49 TYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAI-AKLTQLHYLYITHTNVSGAIPDFLSQIKTL 127 (313)
T ss_dssp CCCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGG-GGCTTCSEEEEEEECCEEECCGGGGGCTTC
T ss_pred cEEEEEEECCCCCCCCCCCCChHHhcCcccccccccccccccccccccc-ccccccchhhhccccccccccccccchhhh
Confidence 346889999999885 467766 799999999987 78888899886 8899999999999999864 6678999999
Q ss_pred CEEEccCCccCC--cccccCCCCCCEEeecCCCCc-ccChhhcCCCCC-CEEEccCCCCCCccCcccccCCCCCcEEEcc
Q 003193 283 RTLSLENCLVVD--VAIIGDLKKLEILSLKHSSIE-QLPREIGQLTCL-KLLDLSNCSKLKEIRPNVISNLTRLEELYMG 358 (840)
Q Consensus 283 ~~L~L~~~~~~~--~~~i~~L~~L~~L~l~~~~l~-~lp~~i~~L~~L-~~L~L~~~~~l~~~p~~~l~~L~~L~~L~l~ 358 (840)
+++++++|.+.. |..++++++|+++++++|.++ .+|..++.+.++ +.+++++ +.+...++..++++..+ .+++.
T Consensus 128 ~~l~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~-n~l~~~~~~~~~~l~~~-~l~l~ 205 (313)
T d1ogqa_ 128 VTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISR-NRLTGKIPPTFANLNLA-FVDLS 205 (313)
T ss_dssp CEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCS-SEEEEECCGGGGGCCCS-EEECC
T ss_pred cccccccccccccCchhhccCcccceeecccccccccccccccccccccccccccc-ccccccccccccccccc-ccccc
Confidence 999999998766 789999999999999999887 789999999887 8888888 56665555547776555 68888
Q ss_pred CCcccceecCCCCCCcccccCCCCCCeEEEecCCCCCCCCcccccCcceEEEEEcCccCCCCCccccceEEEeeCCCc-c
Q 003193 359 NSFTQWKVEGQSNASLGELKQLSRLTTLEVHIPDAQVMPQDLVFVELERFRICIGDVWSWSDGYETSKTLKLQLNNST-Y 437 (840)
Q Consensus 359 ~~~~~~~~~~~~~~~l~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~l~~~~~~-~ 437 (840)
.+...... ...+..+++|+.+++..+.....+.. +...++++.|+++.+... .
T Consensus 206 ~~~~~~~~-------~~~~~~~~~l~~l~~~~~~l~~~~~~-------------------~~~~~~L~~L~Ls~N~l~g~ 259 (313)
T d1ogqa_ 206 RNMLEGDA-------SVLFGSDKNTQKIHLAKNSLAFDLGK-------------------VGLSKNLNGLDLRNNRIYGT 259 (313)
T ss_dssp SSEEEECC-------GGGCCTTSCCSEEECCSSEECCBGGG-------------------CCCCTTCCEEECCSSCCEEC
T ss_pred cccccccc-------cccccccccccccccccccccccccc-------------------cccccccccccCccCeeccc
Confidence 77554322 25566778899998887765433222 233455666777776665 6
Q ss_pred chhhHHHHHhcccceeeccccccccccccccchhhcccccEEEeecCCC
Q 003193 438 LGYGMKMLLKRTEDLHLDELAGFKNVVHELDDEEGFARLRHLHVHNGPE 486 (840)
Q Consensus 438 ~~~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~~~~l~~L~~L~l~~~~~ 486 (840)
+|.++.. +++|++|+|++|.....+|. + +.+++|+.+++.+|+.
T Consensus 260 iP~~l~~-L~~L~~L~Ls~N~l~g~iP~-~---~~L~~L~~l~l~~N~~ 303 (313)
T d1ogqa_ 260 LPQGLTQ-LKFLHSLNVSFNNLCGEIPQ-G---GNLQRFDVSAYANNKC 303 (313)
T ss_dssp CCGGGGG-CTTCCEEECCSSEEEEECCC-S---TTGGGSCGGGTCSSSE
T ss_pred CChHHhC-CCCCCEEECcCCcccccCCC-c---ccCCCCCHHHhCCCcc
Confidence 7777665 68999999999876656653 3 6789999999998873
|
| >d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: von Willebrand factor binding domain of glycoprotein Ib alpha species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.69 E-value=1.6e-16 Score=160.07 Aligned_cols=189 Identities=21% Similarity=0.219 Sum_probs=134.3
Q ss_pred CCcEEEeccCCcccCCcccCCCcceeEeeccCccccCCCchhhcCCCCCcEEEcCCCCCCCCChhhcCCCCCCEEEccCC
Q 003193 211 APTAISIPFRGIYELPERLGFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPSSLGCLINLRTLSLENC 290 (840)
Q Consensus 211 ~l~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~l~~l~~L~~L~L~~~ 290 (840)
....++.+++++..+|..+. +++++|++++|.+. .+|...|.++++|++|++++|.++.+|. ++.+++|++|++++|
T Consensus 11 ~~~~v~C~~~~L~~iP~~lp-~~l~~L~Ls~N~i~-~l~~~~f~~l~~L~~L~L~~N~l~~l~~-~~~l~~L~~L~Ls~N 87 (266)
T d1p9ag_ 11 SHLEVNCDKRNLTALPPDLP-KDTTILHLSENLLY-TFSLATLMPYTRLTQLNLDRAELTKLQV-DGTLPVLGTLDLSHN 87 (266)
T ss_dssp TCCEEECTTSCCSSCCSCCC-TTCCEEECTTSCCS-EEEGGGGTTCTTCCEEECTTSCCCEEEC-CSCCTTCCEEECCSS
T ss_pred CCeEEEccCCCCCeeCcCcC-cCCCEEECcCCcCC-CcCHHHhhcccccccccccccccccccc-ccccccccccccccc
Confidence 34456666777777776542 46788888887765 4555566788888888888888877763 567888888888888
Q ss_pred ccCC-cccccCCCCCCEEeecCCCCcccC-hhhcCCCCCCEEEccCCCCCCccCcccccCCCCCcEEEccCCcccceecC
Q 003193 291 LVVD-VAIIGDLKKLEILSLKHSSIEQLP-REIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGNSFTQWKVEG 368 (840)
Q Consensus 291 ~~~~-~~~i~~L~~L~~L~l~~~~l~~lp-~~i~~L~~L~~L~L~~~~~l~~~p~~~l~~L~~L~~L~l~~~~~~~~~~~ 368 (840)
++.. +..+.++++|++|+++++.+..++ ..+..+.++++|++++ +.+..+|+..+..+++|+.|++++|.+....
T Consensus 88 ~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~-n~l~~l~~~~~~~l~~l~~l~l~~N~l~~~~-- 164 (266)
T d1p9ag_ 88 QLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKG-NELKTLPPGLLTPTPKLEKLSLANNNLTELP-- 164 (266)
T ss_dssp CCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTT-SCCCCCCTTTTTTCTTCCEEECTTSCCSCCC--
T ss_pred cccccccccccccccccccccccccceeeccccccccccccccccc-cccceeccccccccccchhcccccccccccC--
Confidence 8777 677778888888888888777664 3456778888888887 5777777776777888888888887664322
Q ss_pred CCCCCcccccCCCCCCeEEEecCCCCCCCCcc-cccCcceEEE
Q 003193 369 QSNASLGELKQLSRLTTLEVHIPDAQVMPQDL-VFVELERFRI 410 (840)
Q Consensus 369 ~~~~~l~~l~~l~~L~~L~l~~~~~~~~~~~~-~~~~L~~L~l 410 (840)
...+..+++|+.|++++|.+..+|..+ .+.+|+.|.+
T Consensus 165 -----~~~~~~l~~L~~L~Ls~N~L~~lp~~~~~~~~L~~L~L 202 (266)
T d1p9ag_ 165 -----AGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFL 202 (266)
T ss_dssp -----TTTTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEEC
T ss_pred -----ccccccccccceeecccCCCcccChhHCCCCCCCEEEe
Confidence 244567778888888888877777654 4444554444
|
| >d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CED-4, NB-ARC domain species: Caenorhabditis elegans [TaxId: 6239]
Probab=99.69 E-value=1.1e-17 Score=168.48 Aligned_cols=99 Identities=13% Similarity=0.033 Sum_probs=87.3
Q ss_pred ceEEccCCCHHHHHHHHHHHhCCCCCCCchhhHHHHHHHHhCCCchhHHHHHHHhcCCCHHHHHHHHHHhhcCCCCCccc
Q 003193 8 EDFLDWLLSNEEASHLFEKIVGHSAKKSDFETIGVEIVAKCGGLPIAIKTIANALKNKSPRIWKDAVNQLSNSNPRKIQG 87 (840)
Q Consensus 8 ~~~~l~~L~~~~s~~Lf~~~a~~~~~~~~~~~i~~~i~~~c~GlPLai~~~g~~L~~~~~~~W~~~l~~l~~~~~~~~~~ 87 (840)
++|+|++|+++|||+||+++||.....+..++++++||++|+|+||||+++|+.|+.++.++|.+..+.|.+...
T Consensus 178 ~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~iv~~c~GlPLAl~~ig~~l~~k~~~~~~~~~~~L~~~~~----- 252 (277)
T d2a5yb3 178 EFIEVTSLEIDECYDFLEAYGMPMPVGEKEEDVLNKTIELSSGNPATLMMFFKSCEPKTFEKMAQLNNKLESRGL----- 252 (277)
T ss_dssp EEEECCCCCHHHHHHHHHHTSCCCC--CHHHHHHHHHHHHHTTCHHHHHHHHTTCCSSSHHHHHHHHHHHHHHCS-----
T ss_pred ceEECCCCCHHHHHHHHHHHhCCccCchhhHHHHHHHHHHhCCCHHHHHHHHHHhccCCHHHHHHHHHHHhcCcH-----
Confidence 689999999999999999999976666778999999999999999999999999999999999999998865432
Q ss_pred ccccccceeecccccCchhhhhHHHh
Q 003193 88 MDADLSSIELSYEFLKCKEVKSLFQL 113 (840)
Q Consensus 88 ~~~~~~~l~lSY~~L~~~~lk~cfl~ 113 (840)
.+..+++++||++||++ +|+||-+
T Consensus 253 -~~v~~il~~sY~~L~~~-lk~c~~~ 276 (277)
T d2a5yb3 253 -VGVECITPYSYKSLAMA-LQRCVEV 276 (277)
T ss_dssp -STTCCCSSSSSSSHHHH-HHHHHHT
T ss_pred -HHHHHHHHHHHhcccHH-HHHHHHh
Confidence 22388899999999998 9999976
|
| >d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.67 E-value=8.3e-16 Score=156.68 Aligned_cols=195 Identities=22% Similarity=0.330 Sum_probs=157.2
Q ss_pred ecCccchhhhhhccCCCcEEEeccCCcccCCcc-c-CCCcceeEeeccCccccCCCchhhcCCCCCcEEEcC-CCCCCCC
Q 003193 196 QNVADLKEELDKIDEAPTAISIPFRGIYELPER-L-GFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLT-GFRFHSL 272 (840)
Q Consensus 196 ~~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~~~-~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~l~-~~~~~~l 272 (840)
..+..++.+|...+..++.|++++|.+..+|.. + ++++|+.|++++|.+.. ++...+..+..++.++.. .+.+..+
T Consensus 18 c~~~~L~~iP~~ip~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~-i~~~~~~~~~~~~~l~~~~~~~~~~l 96 (284)
T d1ozna_ 18 CPQQGLQAVPVGIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLAR-IDAAAFTGLALLEQLDLSDNAQLRSV 96 (284)
T ss_dssp CCSSCCSSCCTTCCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCE-ECTTTTTTCTTCCEEECCSCTTCCCC
T ss_pred cCCCCCCccCCCCCCCCCEEECcCCcCCCCCHHHhhccccccccccccccccc-cccccccccccccccccccccccccc
Confidence 345567777777788899999999999888864 3 78999999999888763 455556788888888765 4456666
Q ss_pred -ChhhcCCCCCCEEEccCCccCC--cccccCCCCCCEEeecCCCCcccCh-hhcCCCCCCEEEccCCCCCCccCcccccC
Q 003193 273 -PSSLGCLINLRTLSLENCLVVD--VAIIGDLKKLEILSLKHSSIEQLPR-EIGQLTCLKLLDLSNCSKLKEIRPNVISN 348 (840)
Q Consensus 273 -p~~l~~l~~L~~L~L~~~~~~~--~~~i~~L~~L~~L~l~~~~l~~lp~-~i~~L~~L~~L~L~~~~~l~~~p~~~l~~ 348 (840)
|..+.++++|++|++++|.+.. +..++...+|+++++++|.++.+|. .+..+++|++|++++ +.+..+++..+.+
T Consensus 97 ~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~-N~l~~l~~~~f~~ 175 (284)
T d1ozna_ 97 DPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHG-NRISSVPERAFRG 175 (284)
T ss_dssp CTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS-SCCCEECTTTTTT
T ss_pred cchhhcccccCCEEecCCcccccccccccchhcccchhhhccccccccChhHhccccchhhccccc-Ccccccchhhhcc
Confidence 6678899999999999998876 5677889999999999999998874 467889999999998 5788888887899
Q ss_pred CCCCcEEEccCCcccceecCCCCCCcccccCCCCCCeEEEecCCCCCCCCc
Q 003193 349 LTRLEELYMGNSFTQWKVEGQSNASLGELKQLSRLTTLEVHIPDAQVMPQD 399 (840)
Q Consensus 349 L~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~l~~L~~L~l~~~~~~~~~~~ 399 (840)
+++|+.+++++|.+....+ ..+..+++|+.|+++.|.+..++..
T Consensus 176 l~~L~~l~l~~N~l~~i~~-------~~f~~l~~L~~L~l~~N~i~~~~~~ 219 (284)
T d1ozna_ 176 LHSLDRLLLHQNRVAHVHP-------HAFRDLGRLMTLYLFANNLSALPTE 219 (284)
T ss_dssp CTTCCEEECCSSCCCEECT-------TTTTTCTTCCEEECCSSCCSCCCHH
T ss_pred ccccchhhhhhccccccCh-------hHhhhhhhccccccccccccccccc
Confidence 9999999999987764333 5577788899999998888766543
|
| >d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Leucine rich effector protein YopM domain: Leucine rich effector protein YopM species: Yersinia pestis [TaxId: 632]
Probab=99.66 E-value=8e-15 Score=154.69 Aligned_cols=139 Identities=23% Similarity=0.298 Sum_probs=95.2
Q ss_pred cceeEeeccCccccCCCchhhcCCCCCcEEEcCCCCCCCCChhhcCCCCCCEEEccCCccCCcccccCCCCCCEEeecCC
Q 003193 233 KLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPSSLGCLINLRTLSLENCLVVDVAIIGDLKKLEILSLKHS 312 (840)
Q Consensus 233 ~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~~i~~L~~L~~L~l~~~ 312 (840)
+++.|+++++.+. .+|+ ..++|++|++++|+++++|+.+ .+|+.|++++|.++..+.+. +.|++|++++|
T Consensus 39 ~l~~LdLs~~~L~-~lp~----~~~~L~~L~Ls~N~l~~lp~~~---~~L~~L~l~~n~l~~l~~lp--~~L~~L~L~~n 108 (353)
T d1jl5a_ 39 QAHELELNNLGLS-SLPE----LPPHLESLVASCNSLTELPELP---QSLKSLLVDNNNLKALSDLP--PLLEYLGVSNN 108 (353)
T ss_dssp TCSEEECTTSCCS-CCCS----CCTTCSEEECCSSCCSSCCCCC---TTCCEEECCSSCCSCCCSCC--TTCCEEECCSS
T ss_pred CCCEEEeCCCCCC-CCCC----CCCCCCEEECCCCCCcccccch---hhhhhhhhhhcccchhhhhc--ccccccccccc
Confidence 5778888888765 5674 2568888888888888888653 57888888888877633222 45888888888
Q ss_pred CCcccChhhcCCCCCCEEEccCCCCCCccCcccccCCCCCcEEEccCCcccceecCCCCCCcccccCCCCCCeEEEecCC
Q 003193 313 SIEQLPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGNSFTQWKVEGQSNASLGELKQLSRLTTLEVHIPD 392 (840)
Q Consensus 313 ~l~~lp~~i~~L~~L~~L~L~~~~~l~~~p~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~l~~L~~L~l~~~~ 392 (840)
.++.+|. ++++++|++|++++ +.+...+.. ...+..+.+..+... ....+..++.++.+.+..+.
T Consensus 109 ~l~~lp~-~~~l~~L~~L~l~~-~~~~~~~~~----~~~l~~l~~~~~~~~---------~~~~l~~l~~l~~L~l~~n~ 173 (353)
T d1jl5a_ 109 QLEKLPE-LQNSSFLKIIDVDN-NSLKKLPDL----PPSLEFIAAGNNQLE---------ELPELQNLPFLTAIYADNNS 173 (353)
T ss_dssp CCSSCCC-CTTCTTCCEEECCS-SCCSCCCCC----CTTCCEEECCSSCCS---------SCCCCTTCTTCCEEECCSSC
T ss_pred ccccccc-hhhhccceeecccc-ccccccccc----cccccchhhcccccc---------ccccccccccceeccccccc
Confidence 8888885 67888888888887 445555432 355666666554321 22445566777777777665
Q ss_pred CCCC
Q 003193 393 AQVM 396 (840)
Q Consensus 393 ~~~~ 396 (840)
....
T Consensus 174 ~~~~ 177 (353)
T d1jl5a_ 174 LKKL 177 (353)
T ss_dssp CSSC
T ss_pred cccc
Confidence 5443
|
| >d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Leucine rich effector protein YopM domain: Leucine rich effector protein YopM species: Yersinia pestis [TaxId: 632]
Probab=99.66 E-value=1.7e-14 Score=152.22 Aligned_cols=138 Identities=20% Similarity=0.293 Sum_probs=107.7
Q ss_pred CCCcEEEeccCCcccCCcccCCCcceeEeeccCccccCCCchhhcCCCCCcEEEcCCCCCCCCChhhcCCCCCCEEEccC
Q 003193 210 EAPTAISIPFRGIYELPERLGFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPSSLGCLINLRTLSLEN 289 (840)
Q Consensus 210 ~~l~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~l~~l~~L~~L~L~~ 289 (840)
.++++|+++++++..+|+. .++|++|++++|.+. .+|. .+.+|+.|++++|.++.+++- .+.|++|++++
T Consensus 38 ~~l~~LdLs~~~L~~lp~~--~~~L~~L~Ls~N~l~-~lp~----~~~~L~~L~l~~n~l~~l~~l---p~~L~~L~L~~ 107 (353)
T d1jl5a_ 38 RQAHELELNNLGLSSLPEL--PPHLESLVASCNSLT-ELPE----LPQSLKSLLVDNNNLKALSDL---PPLLEYLGVSN 107 (353)
T ss_dssp HTCSEEECTTSCCSCCCSC--CTTCSEEECCSSCCS-SCCC----CCTTCCEEECCSSCCSCCCSC---CTTCCEEECCS
T ss_pred cCCCEEEeCCCCCCCCCCC--CCCCCEEECCCCCCc-cccc----chhhhhhhhhhhcccchhhhh---ccccccccccc
Confidence 3578999999999999864 578999999998876 6774 356899999999999877642 24699999999
Q ss_pred CccCCcccccCCCCCCEEeecCCCCcccChhhcCCCCCCEEEccCCCCCCccCcccccCCCCCcEEEccCCccc
Q 003193 290 CLVVDVAIIGDLKKLEILSLKHSSIEQLPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGNSFTQ 363 (840)
Q Consensus 290 ~~~~~~~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~L~~~~~l~~~p~~~l~~L~~L~~L~l~~~~~~ 363 (840)
|.+...+.++++++|++|+++++.++..|.. ...+..+.+..+. ..... . ++.++.++.+++.++...
T Consensus 108 n~l~~lp~~~~l~~L~~L~l~~~~~~~~~~~---~~~l~~l~~~~~~-~~~~~-~-l~~l~~l~~L~l~~n~~~ 175 (353)
T d1jl5a_ 108 NQLEKLPELQNSSFLKIIDVDNNSLKKLPDL---PPSLEFIAAGNNQ-LEELP-E-LQNLPFLTAIYADNNSLK 175 (353)
T ss_dssp SCCSSCCCCTTCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSC-CSSCC-C-CTTCTTCCEEECCSSCCS
T ss_pred cccccccchhhhccceeeccccccccccccc---cccccchhhcccc-ccccc-c-ccccccceeccccccccc
Confidence 9998855678999999999999988877754 4566777776633 22222 2 678899999998887543
|
| >d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: von Willebrand factor binding domain of glycoprotein Ib alpha species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.66 E-value=5.6e-16 Score=156.08 Aligned_cols=185 Identities=18% Similarity=0.213 Sum_probs=158.9
Q ss_pred cCccchhhhhhccCCCcEEEeccCCcccCCcc-c-CCCcceeEeeccCccccCCCchhhcCCCCCcEEEcCCCCCCCCCh
Q 003193 197 NVADLKEELDKIDEAPTAISIPFRGIYELPER-L-GFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPS 274 (840)
Q Consensus 197 ~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~~~-~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~ 274 (840)
.+..+..+|...++++++|++++|.+..++.. + .+++|++|++++|.+. .++. +..+++|++|++++|+++..|.
T Consensus 18 ~~~~L~~iP~~lp~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~-~l~~--~~~l~~L~~L~Ls~N~l~~~~~ 94 (266)
T d1p9ag_ 18 DKRNLTALPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT-KLQV--DGTLPVLGTLDLSHNQLQSLPL 94 (266)
T ss_dssp TTSCCSSCCSCCCTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCC-EEEC--CSCCTTCCEEECCSSCCSSCCC
T ss_pred cCCCCCeeCcCcCcCCCEEECcCCcCCCcCHHHhhcccccccccccccccc-cccc--cccccccccccccccccccccc
Confidence 45567777877788999999999999888754 3 7999999999999876 4443 4789999999999999999999
Q ss_pred hhcCCCCCCEEEccCCccCC--cccccCCCCCCEEeecCCCCcccChh-hcCCCCCCEEEccCCCCCCccCcccccCCCC
Q 003193 275 SLGCLINLRTLSLENCLVVD--VAIIGDLKKLEILSLKHSSIEQLPRE-IGQLTCLKLLDLSNCSKLKEIRPNVISNLTR 351 (840)
Q Consensus 275 ~l~~l~~L~~L~L~~~~~~~--~~~i~~L~~L~~L~l~~~~l~~lp~~-i~~L~~L~~L~L~~~~~l~~~p~~~l~~L~~ 351 (840)
.+..+++|++|+++++.+.. +..+..+.++++|++++|.++.+|.. +..+++|+.|++++ +.+..++.+.++.+++
T Consensus 95 ~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~-N~l~~~~~~~~~~l~~ 173 (266)
T d1p9ag_ 95 LGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLAN-NNLTELPAGLLNGLEN 173 (266)
T ss_dssp CTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTT-SCCSCCCTTTTTTCTT
T ss_pred ccccccccccccccccccceeeccccccccccccccccccccceeccccccccccchhccccc-ccccccCccccccccc
Confidence 99999999999999999887 57788999999999999999998765 47799999999999 6888998888899999
Q ss_pred CcEEEccCCcccceecCCCCCCcccccCCCCCCeEEEecCCC
Q 003193 352 LEELYMGNSFTQWKVEGQSNASLGELKQLSRLTTLEVHIPDA 393 (840)
Q Consensus 352 L~~L~l~~~~~~~~~~~~~~~~l~~l~~l~~L~~L~l~~~~~ 393 (840)
|++|++++|.+. .++ ..+..+++|+.|++++|..
T Consensus 174 L~~L~Ls~N~L~-~lp-------~~~~~~~~L~~L~L~~Np~ 207 (266)
T d1p9ag_ 174 LDTLLLQENSLY-TIP-------KGFFGSHLLPFAFLHGNPW 207 (266)
T ss_dssp CCEEECCSSCCC-CCC-------TTTTTTCCCSEEECCSCCB
T ss_pred cceeecccCCCc-ccC-------hhHCCCCCCCEEEecCCCC
Confidence 999999999876 333 4455688899999998864
|
| >d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Decorin species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.65 E-value=2.8e-15 Score=154.60 Aligned_cols=252 Identities=15% Similarity=0.202 Sum_probs=145.0
Q ss_pred cchhhhhhccCCCcEEEeccCCcccCCcc-c-CCCcceeEeeccCccccCCCchhhcCCCCCcEEEcCCCCCCCCChhhc
Q 003193 200 DLKEELDKIDEAPTAISIPFRGIYELPER-L-GFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPSSLG 277 (840)
Q Consensus 200 ~~~~~~~~~~~~l~~L~l~~~~~~~l~~~-~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~l~ 277 (840)
.+..+|...+..+++|++++|.+..+++. + .+++|++|++++|.+.. +++..|.++++|++|++++|+++.+|..+
T Consensus 21 ~L~~lP~~l~~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~-i~~~~f~~l~~L~~L~l~~n~l~~l~~~~- 98 (305)
T d1xkua_ 21 GLEKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISK-ISPGAFAPLVKLERLYLSKNQLKELPEKM- 98 (305)
T ss_dssp CCCSCCCSCCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCC-BCTTTTTTCTTCCEEECCSSCCSBCCSSC-
T ss_pred CCCccCCCCCCCCCEEECcCCcCCCcChhHhhccccccccccccccccc-cchhhhhCCCccCEecccCCccCcCccch-
Confidence 45555555556666777776666666542 2 56666666666666553 33334466666666666666666666432
Q ss_pred CCCCCCEEEccCCccCC--cccccCCCCCCEEeecCCCCc---ccChhhcCCCCCCEEEccCCCCCCccCcccccCCCCC
Q 003193 278 CLINLRTLSLENCLVVD--VAIIGDLKKLEILSLKHSSIE---QLPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRL 352 (840)
Q Consensus 278 ~l~~L~~L~L~~~~~~~--~~~i~~L~~L~~L~l~~~~l~---~lp~~i~~L~~L~~L~L~~~~~l~~~p~~~l~~L~~L 352 (840)
...|+.|++.+|.+.. ...+.....++.++...+... ..+..+..+++|+.+++.+ +.+..+|.. .+++|
T Consensus 99 -~~~l~~L~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~-n~l~~l~~~---~~~~L 173 (305)
T d1xkua_ 99 -PKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIAD-TNITTIPQG---LPPSL 173 (305)
T ss_dssp -CTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCS-SCCCSCCSS---CCTTC
T ss_pred -hhhhhhhhccccchhhhhhhhhhccccccccccccccccccCCCccccccccccCcccccc-CCccccCcc---cCCcc
Confidence 3456666666666555 233445555666666555322 2234455666666666666 345555543 24566
Q ss_pred cEEEccCCcccceecCCCCCCcccccCCCCCCeEEEecCCCCCCCCcccccCcceEEEEEcCccCCCCCccccceEEEee
Q 003193 353 EELYMGNSFTQWKVEGQSNASLGELKQLSRLTTLEVHIPDAQVMPQDLVFVELERFRICIGDVWSWSDGYETSKTLKLQL 432 (840)
Q Consensus 353 ~~L~l~~~~~~~~~~~~~~~~l~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~l~~ 432 (840)
++|++++|......+ ..+.+++.++.|+++++.+..++.
T Consensus 174 ~~L~l~~n~~~~~~~-------~~~~~~~~l~~L~~s~n~l~~~~~---------------------------------- 212 (305)
T d1xkua_ 174 TELHLDGNKITKVDA-------ASLKGLNNLAKLGLSFNSISAVDN---------------------------------- 212 (305)
T ss_dssp SEEECTTSCCCEECT-------GGGTTCTTCCEEECCSSCCCEECT----------------------------------
T ss_pred CEEECCCCcCCCCCh-------hHhhcccccccccccccccccccc----------------------------------
Confidence 666666654432211 344555566666665554443322
Q ss_pred CCCccchhhHHHHHhcccceeeccccccccccccccchhhcccccEEEeecCCCeEEEEeCCC----ccccccccceeec
Q 003193 433 NNSTYLGYGMKMLLKRTEDLHLDELAGFKNVVHELDDEEGFARLRHLHVHNGPEILHILNSDG----RVGTFPLLESLFL 508 (840)
Q Consensus 433 ~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~~~~l~~L~~L~l~~~~~l~~~~~~~~----~~~~~~~L~~L~l 508 (840)
.....+++|++|+|++|. ++.++..+ ..+++|++|++++|. ++.+..... .....++|+.|.|
T Consensus 213 --------~~~~~l~~L~~L~L~~N~-L~~lp~~l---~~l~~L~~L~Ls~N~-i~~i~~~~f~~~~~~~~~~~L~~L~L 279 (305)
T d1xkua_ 213 --------GSLANTPHLRELHLNNNK-LVKVPGGL---ADHKYIQVVYLHNNN-ISAIGSNDFCPPGYNTKKASYSGVSL 279 (305)
T ss_dssp --------TTGGGSTTCCEEECCSSC-CSSCCTTT---TTCSSCCEEECCSSC-CCCCCTTSSSCSSCCTTSCCCSEEEC
T ss_pred --------ccccccccceeeeccccc-cccccccc---ccccCCCEEECCCCc-cCccChhhccCcchhcccCCCCEEEC
Confidence 111124677788888774 44556666 668888999888874 555532211 1245678889999
Q ss_pred cccc
Q 003193 509 HNLI 512 (840)
Q Consensus 509 ~~~~ 512 (840)
.+++
T Consensus 280 ~~N~ 283 (305)
T d1xkua_ 280 FSNP 283 (305)
T ss_dssp CSSS
T ss_pred CCCc
Confidence 8865
|
| >d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Probab=99.59 E-value=1.3e-14 Score=138.65 Aligned_cols=162 Identities=23% Similarity=0.344 Sum_probs=122.6
Q ss_pred ccCCCcEEEeccCCcccCCcccCCCcceeEeeccCccccCCCchhhcCCCCCcEEEcCCCCCCCCChhhcCCCCCCEEEc
Q 003193 208 IDEAPTAISIPFRGIYELPERLGFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPSSLGCLINLRTLSL 287 (840)
Q Consensus 208 ~~~~l~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~l~~l~~L~~L~L 287 (840)
...++++|+++++.+..++....+++|++|++++|.+.. ++. +.++++|++|++++|.+..++ .++++++|++|++
T Consensus 38 ~l~~l~~L~l~~~~i~~l~~l~~l~nL~~L~Ls~N~l~~-~~~--l~~l~~L~~L~l~~n~~~~~~-~l~~l~~L~~L~l 113 (199)
T d2omxa2 38 DLDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTD-ITP--LKNLTKLVDILMNNNQIADIT-PLANLTNLTGLTL 113 (199)
T ss_dssp HHTTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCC-CGG--GTTCTTCCEEECCSSCCCCCG-GGTTCTTCSEEEC
T ss_pred HhcCCCEEECCCCCCCCccccccCCCcCcCccccccccC-ccc--ccCCccccccccccccccccc-ccccccccccccc
Confidence 456788999999888877655578888888888887653 333 578888888888888887776 4788888888888
Q ss_pred cCCccCCcccccCCCCCCEEeecCCCCcccChhhcCCCCCCEEEccCCCCCCccCcccccCCCCCcEEEccCCcccceec
Q 003193 288 ENCLVVDVAIIGDLKKLEILSLKHSSIEQLPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGNSFTQWKVE 367 (840)
Q Consensus 288 ~~~~~~~~~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~L~~~~~l~~~p~~~l~~L~~L~~L~l~~~~~~~~~~ 367 (840)
++|.......+.++++|++|++++|.+..+| .+..+++|+.|++.+ +.+..+++ ++++++|++|++++|.+.
T Consensus 114 ~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~l~~~~~L~~L~l~~-n~l~~l~~--l~~l~~L~~L~ls~N~i~---- 185 (199)
T d2omxa2 114 FNNQITDIDPLKNLTNLNRLELSSNTISDIS-ALSGLTSLQQLNFSS-NQVTDLKP--LANLTTLERLDISSNKVS---- 185 (199)
T ss_dssp CSSCCCCCGGGTTCTTCSEEECCSSCCCCCG-GGTTCTTCSEEECCS-SCCCCCGG--GTTCTTCCEEECCSSCCC----
T ss_pred cccccccccccchhhhhHHhhhhhhhhcccc-ccccccccccccccc-ccccCCcc--ccCCCCCCEEECCCCCCC----
Confidence 8888777666788888888888888887766 477888888888887 46777754 788888888888887653
Q ss_pred CCCCCCcccccCCCCCCeE
Q 003193 368 GQSNASLGELKQLSRLTTL 386 (840)
Q Consensus 368 ~~~~~~l~~l~~l~~L~~L 386 (840)
.+..+.++++|+.|
T Consensus 186 -----~i~~l~~L~~L~~L 199 (199)
T d2omxa2 186 -----DISVLAKLTNLESL 199 (199)
T ss_dssp -----CCGGGGGCTTCSEE
T ss_pred -----CCccccCCCCCCcC
Confidence 23445666666654
|
| >d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Probab=99.58 E-value=1.6e-14 Score=139.27 Aligned_cols=166 Identities=25% Similarity=0.315 Sum_probs=133.8
Q ss_pred ccCCCcEEEeccCCcccCCcccCCCcceeEeeccCccccCCCchhhcCCCCCcEEEcCCCCCCCCChhhcCCCCCCEEEc
Q 003193 208 IDEAPTAISIPFRGIYELPERLGFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPSSLGCLINLRTLSL 287 (840)
Q Consensus 208 ~~~~l~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~l~~l~~L~~L~L 287 (840)
...++++|.++++.+..++..-.+++|++|++++|.+.. ++. +..+++|++|++++|.++.+| .+..+++|+.|++
T Consensus 44 ~L~~L~~L~l~~~~i~~l~~l~~l~~L~~L~L~~n~i~~-l~~--~~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~l 119 (210)
T d1h6ta2 44 ELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTD-IKP--LANLKNLGWLFLDENKVKDLS-SLKDLKKLKSLSL 119 (210)
T ss_dssp HHHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCC-CGG--GTTCTTCCEEECCSSCCCCGG-GGTTCTTCCEEEC
T ss_pred HhcCccEEECcCCCCCCchhHhhCCCCCEEeCCCccccC-ccc--cccCccccccccccccccccc-ccccccccccccc
Confidence 355788999999998877765578899999999887763 442 478889999999999988887 5888999999999
Q ss_pred cCCccCCcccccCCCCCCEEeecCCCCcccChhhcCCCCCCEEEccCCCCCCccCcccccCCCCCcEEEccCCcccceec
Q 003193 288 ENCLVVDVAIIGDLKKLEILSLKHSSIEQLPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGNSFTQWKVE 367 (840)
Q Consensus 288 ~~~~~~~~~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~L~~~~~l~~~p~~~l~~L~~L~~L~l~~~~~~~~~~ 367 (840)
++|.+..+..+.++++|+.+++++|.++..+ .+.++++|+++++++ +.+..+++ ++++++|++|++++|.+.
T Consensus 120 ~~~~~~~~~~l~~l~~l~~l~~~~n~l~~~~-~~~~l~~L~~l~l~~-n~l~~i~~--l~~l~~L~~L~Ls~N~i~---- 191 (210)
T d1h6ta2 120 EHNGISDINGLVHLPQLESLYLGNNKITDIT-VLSRLTKLDTLSLED-NQISDIVP--LAGLTKLQNLYLSKNHIS---- 191 (210)
T ss_dssp TTSCCCCCGGGGGCTTCCEEECCSSCCCCCG-GGGGCTTCSEEECCS-SCCCCCGG--GTTCTTCCEEECCSSCCC----
T ss_pred ccccccccccccccccccccccccccccccc-ccccccccccccccc-cccccccc--ccCCCCCCEEECCCCCCC----
Confidence 9998887777888899999999998888765 477889999999988 46777764 788999999999888653
Q ss_pred CCCCCCcccccCCCCCCeEEEec
Q 003193 368 GQSNASLGELKQLSRLTTLEVHI 390 (840)
Q Consensus 368 ~~~~~~l~~l~~l~~L~~L~l~~ 390 (840)
.+..+.++++|+.|++++
T Consensus 192 -----~l~~l~~l~~L~~L~Ls~ 209 (210)
T d1h6ta2 192 -----DLRALAGLKNLDVLELFS 209 (210)
T ss_dssp -----BCGGGTTCTTCSEEEEEE
T ss_pred -----CChhhcCCCCCCEEEccC
Confidence 234577888888888863
|
| >d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Probab=99.58 E-value=1.4e-14 Score=138.48 Aligned_cols=173 Identities=18% Similarity=0.279 Sum_probs=139.0
Q ss_pred cCCcccCCcccCCCcceeEeeccCccccCCCchhhcCCCCCcEEEcCCCCCCCCChhhcCCCCCCEEEccCCccCCcccc
Q 003193 219 FRGIYELPERLGFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPSSLGCLINLRTLSLENCLVVDVAII 298 (840)
Q Consensus 219 ~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~~i 298 (840)
.+.+........+++++.|++.++.+. .+. . ++.+++|++|++++|.++.+++ ++++++|++|++++|.+...+.+
T Consensus 27 ~~~~~~~~~~~~l~~l~~L~l~~~~i~-~l~-~-l~~l~nL~~L~Ls~N~l~~~~~-l~~l~~L~~L~l~~n~~~~~~~l 102 (199)
T d2omxa2 27 KTNVTDTVSQTDLDQVTTLQADRLGIK-SID-G-VEYLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQIADITPL 102 (199)
T ss_dssp CSSTTSEECHHHHTTCCEEECTTSCCC-CCT-T-GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGGG
T ss_pred CCCCCCccCHHHhcCCCEEECCCCCCC-Ccc-c-cccCCCcCcCccccccccCccc-ccCCccccccccccccccccccc
Confidence 344433333335788999999998876 343 2 4789999999999999998875 89999999999999998886679
Q ss_pred cCCCCCCEEeecCCCCcccChhhcCCCCCCEEEccCCCCCCccCcccccCCCCCcEEEccCCcccceecCCCCCCccccc
Q 003193 299 GDLKKLEILSLKHSSIEQLPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGNSFTQWKVEGQSNASLGELK 378 (840)
Q Consensus 299 ~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~L~~~~~l~~~p~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~l~~l~ 378 (840)
+++++|++|++++|.+..++ .+..+++|+.|++++ +.+..++. +..+++|+.|++.+|.+. .+..+.
T Consensus 103 ~~l~~L~~L~l~~~~~~~~~-~~~~l~~L~~L~l~~-n~l~~~~~--l~~~~~L~~L~l~~n~l~---------~l~~l~ 169 (199)
T d2omxa2 103 ANLTNLTGLTLFNNQITDID-PLKNLTNLNRLELSS-NTISDISA--LSGLTSLQQLNFSSNQVT---------DLKPLA 169 (199)
T ss_dssp TTCTTCSEEECCSSCCCCCG-GGTTCTTCSEEECCS-SCCCCCGG--GTTCTTCSEEECCSSCCC---------CCGGGT
T ss_pred cccccccccccccccccccc-ccchhhhhHHhhhhh-hhhccccc--cccccccccccccccccc---------CCcccc
Confidence 99999999999999887765 488999999999998 56777754 789999999999998664 234578
Q ss_pred CCCCCCeEEEecCCCCCCCCcccccCcceE
Q 003193 379 QLSRLTTLEVHIPDAQVMPQDLVFVELERF 408 (840)
Q Consensus 379 ~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L 408 (840)
++++|+.|++++|.++.++.-..+++|+.|
T Consensus 170 ~l~~L~~L~ls~N~i~~i~~l~~L~~L~~L 199 (199)
T d2omxa2 170 NLTTLERLDISSNKVSDISVLAKLTNLESL 199 (199)
T ss_dssp TCTTCCEEECCSSCCCCCGGGGGCTTCSEE
T ss_pred CCCCCCEEECCCCCCCCCccccCCCCCCcC
Confidence 899999999999988877644456666654
|
| >d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.58 E-value=2.4e-14 Score=145.57 Aligned_cols=173 Identities=19% Similarity=0.288 Sum_probs=125.0
Q ss_pred EEEeccCCcccCCcccCCCcceeEeeccCccccCCCchhhcCCCCCcEEEcCCCCCCCC-ChhhcCCCCCCEEEccCC-c
Q 003193 214 AISIPFRGIYELPERLGFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSL-PSSLGCLINLRTLSLENC-L 291 (840)
Q Consensus 214 ~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~l-p~~l~~l~~L~~L~L~~~-~ 291 (840)
.+..++.++..+|..+. +.+++|++++|.+. .+|...|.++++|++|++++|.+..+ +..+..+..++.+....+ .
T Consensus 15 ~v~c~~~~L~~iP~~ip-~~~~~L~Ls~N~i~-~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~~ 92 (284)
T d1ozna_ 15 TTSCPQQGLQAVPVGIP-AASQRIFLHGNRIS-HVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQ 92 (284)
T ss_dssp EEECCSSCCSSCCTTCC-TTCSEEECTTSCCC-EECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTT
T ss_pred EEEcCCCCCCccCCCCC-CCCCEEECcCCcCC-CCCHHHhhccccccccccccccccccccccccccccccccccccccc
Confidence 45566667777776543 56788888888775 56666678888888888888888765 344566778888876543 4
Q ss_pred cCC--cccccCCCCCCEEeecCCCCcccCh-hhcCCCCCCEEEccCCCCCCccCcccccCCCCCcEEEccCCcccceecC
Q 003193 292 VVD--VAIIGDLKKLEILSLKHSSIEQLPR-EIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGNSFTQWKVEG 368 (840)
Q Consensus 292 ~~~--~~~i~~L~~L~~L~l~~~~l~~lp~-~i~~L~~L~~L~L~~~~~l~~~p~~~l~~L~~L~~L~l~~~~~~~~~~~ 368 (840)
+.. +..++++++|++|++++|.+..++. .+....+|+.+++++ +.++.+|.+.+..+++|++|++++|.+....+
T Consensus 93 ~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~-N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l~~- 170 (284)
T d1ozna_ 93 LRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQD-NALQALPDDTFRDLGNLTHLFLHGNRISSVPE- 170 (284)
T ss_dssp CCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEECCSSCCCEECT-
T ss_pred cccccchhhcccccCCEEecCCcccccccccccchhcccchhhhcc-ccccccChhHhccccchhhcccccCcccccch-
Confidence 544 5678888888888888887776653 456778888888888 67788877767788888888888887653222
Q ss_pred CCCCCcccccCCCCCCeEEEecCCCCCC
Q 003193 369 QSNASLGELKQLSRLTTLEVHIPDAQVM 396 (840)
Q Consensus 369 ~~~~~l~~l~~l~~L~~L~l~~~~~~~~ 396 (840)
..+.++++|+.++++.|.+..+
T Consensus 171 ------~~f~~l~~L~~l~l~~N~l~~i 192 (284)
T d1ozna_ 171 ------RAFRGLHSLDRLLLHQNRVAHV 192 (284)
T ss_dssp ------TTTTTCTTCCEEECCSSCCCEE
T ss_pred ------hhhccccccchhhhhhcccccc
Confidence 4556777888888887766544
|
| >d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin H species: Listeria monocytogenes [TaxId: 1639]
Probab=99.55 E-value=8e-14 Score=136.41 Aligned_cols=188 Identities=18% Similarity=0.268 Sum_probs=155.0
Q ss_pred hccCCCcEEEeccCCcccCCcccCCCcceeEeeccCccccCCCchhhcCCCCCcEEEcCCCCCCCCChhhcCCCCCCEEE
Q 003193 207 KIDEAPTAISIPFRGIYELPERLGFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPSSLGCLINLRTLS 286 (840)
Q Consensus 207 ~~~~~l~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~l~~l~~L~~L~ 286 (840)
....+++.|++.++++..++....+++|++|++++|.+.. +++ +.++++|+++++++|.++.++ .+.++++|++++
T Consensus 38 ~~l~~L~~L~l~~~~i~~l~~l~~l~~L~~L~ls~n~i~~-~~~--l~~l~~l~~l~~~~n~~~~i~-~l~~l~~L~~l~ 113 (227)
T d1h6ua2 38 ADLDGITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQITD-LAP--LKNLTKITELELSGNPLKNVS-AIAGLQSIKTLD 113 (227)
T ss_dssp HHHHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCC-CGG--GTTCCSCCEEECCSCCCSCCG-GGTTCTTCCEEE
T ss_pred HHcCCcCEEECCCCCCCcchhHhcCCCCcEeecCCceeec-ccc--ccccccccccccccccccccc-cccccccccccc
Confidence 3466899999999999888765589999999999998764 322 589999999999999998876 588999999999
Q ss_pred ccCCccCCcccccCCCCCCEEeecCCCCcccChhhcCCCCCCEEEccCCCCCCccCcccccCCCCCcEEEccCCccccee
Q 003193 287 LENCLVVDVAIIGDLKKLEILSLKHSSIEQLPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGNSFTQWKV 366 (840)
Q Consensus 287 L~~~~~~~~~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~L~~~~~l~~~p~~~l~~L~~L~~L~l~~~~~~~~~ 366 (840)
++++.......+.....++.+.++++.+...+ .+.+.++|++|++++ +.+...+. ++++++|++|++++|.+.
T Consensus 114 l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~L~~L~l~~-n~~~~~~~--l~~l~~L~~L~Ls~n~l~--- 186 (227)
T d1h6ua2 114 LTSTQITDVTPLAGLSNLQVLYLDLNQITNIS-PLAGLTNLQYLSIGN-AQVSDLTP--LANLSKLTTLKADDNKIS--- 186 (227)
T ss_dssp CTTSCCCCCGGGTTCTTCCEEECCSSCCCCCG-GGGGCTTCCEEECCS-SCCCCCGG--GTTCTTCCEEECCSSCCC---
T ss_pred cccccccccchhccccchhhhhchhhhhchhh-hhccccccccccccc-cccccchh--hcccccceecccCCCccC---
Confidence 99998888777888999999999998887654 377889999999998 45655544 789999999999998653
Q ss_pred cCCCCCCcccccCCCCCCeEEEecCCCCCCCCcccccCcceEEEE
Q 003193 367 EGQSNASLGELKQLSRLTTLEVHIPDAQVMPQDLVFVELERFRIC 411 (840)
Q Consensus 367 ~~~~~~~l~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~ 411 (840)
.+..+.++++|+.|++++|.++.++.-..+++|+.|++.
T Consensus 187 ------~l~~l~~l~~L~~L~Ls~N~lt~i~~l~~l~~L~~L~ls 225 (227)
T d1h6ua2 187 ------DISPLASLPNLIEVHLKNNQISDVSPLANTSNLFIVTLT 225 (227)
T ss_dssp ------CCGGGGGCTTCCEEECTTSCCCBCGGGTTCTTCCEEEEE
T ss_pred ------CChhhcCCCCCCEEECcCCcCCCCcccccCCCCCEEEee
Confidence 235578889999999999988877754467777777664
|
| >d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Probab=99.55 E-value=3.6e-14 Score=136.77 Aligned_cols=165 Identities=23% Similarity=0.314 Sum_probs=136.7
Q ss_pred CCCcceeEeeccCccccCCCchhhcCCCCCcEEEcCCCCCCCCChhhcCCCCCCEEEccCCccCCcccccCCCCCCEEee
Q 003193 230 GFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPSSLGCLINLRTLSLENCLVVDVAIIGDLKKLEILSL 309 (840)
Q Consensus 230 ~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~~i~~L~~L~~L~l 309 (840)
.+..++.|++.++.+.. ++. +..+++|++|++++|.++.++ .++.+++|++|++++|.++..+.++++++|++|++
T Consensus 44 ~L~~L~~L~l~~~~i~~-l~~--l~~l~~L~~L~L~~n~i~~l~-~~~~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~l 119 (210)
T d1h6ta2 44 ELNSIDQIIANNSDIKS-VQG--IQYLPNVTKLFLNGNKLTDIK-PLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSL 119 (210)
T ss_dssp HHHTCCEEECTTSCCCC-CTT--GGGCTTCCEEECCSSCCCCCG-GGTTCTTCCEEECCSSCCCCGGGGTTCTTCCEEEC
T ss_pred HhcCccEEECcCCCCCC-chh--HhhCCCCCEEeCCCccccCcc-ccccCcccccccccccccccccccccccccccccc
Confidence 46788999999888753 332 478999999999999999887 47899999999999999998668999999999999
Q ss_pred cCCCCcccChhhcCCCCCCEEEccCCCCCCccCcccccCCCCCcEEEccCCcccceecCCCCCCcccccCCCCCCeEEEe
Q 003193 310 KHSSIEQLPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGNSFTQWKVEGQSNASLGELKQLSRLTTLEVH 389 (840)
Q Consensus 310 ~~~~l~~lp~~i~~L~~L~~L~L~~~~~l~~~p~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~l~~L~~L~l~ 389 (840)
++|.+..++ .+..+++|+.+++++ +.+...+. ++++++|+++++++|.+. .+..+.++++|+.|+++
T Consensus 120 ~~~~~~~~~-~l~~l~~l~~l~~~~-n~l~~~~~--~~~l~~L~~l~l~~n~l~---------~i~~l~~l~~L~~L~Ls 186 (210)
T d1h6ta2 120 EHNGISDIN-GLVHLPQLESLYLGN-NKITDITV--LSRLTKLDTLSLEDNQIS---------DIVPLAGLTKLQNLYLS 186 (210)
T ss_dssp TTSCCCCCG-GGGGCTTCCEEECCS-SCCCCCGG--GGGCTTCSEEECCSSCCC---------CCGGGTTCTTCCEEECC
T ss_pred ccccccccc-ccccccccccccccc-cccccccc--cccccccccccccccccc---------ccccccCCCCCCEEECC
Confidence 999888876 588999999999988 56666554 688999999999998664 23457889999999999
Q ss_pred cCCCCCCCCcccccCcceEEEE
Q 003193 390 IPDAQVMPQDLVFVELERFRIC 411 (840)
Q Consensus 390 ~~~~~~~~~~~~~~~L~~L~l~ 411 (840)
+|.+..++.-..+++|+.|+++
T Consensus 187 ~N~i~~l~~l~~l~~L~~L~Ls 208 (210)
T d1h6ta2 187 KNHISDLRALAGLKNLDVLELF 208 (210)
T ss_dssp SSCCCBCGGGTTCTTCSEEEEE
T ss_pred CCCCCCChhhcCCCCCCEEEcc
Confidence 9988877654466777777764
|
| >d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin H species: Listeria monocytogenes [TaxId: 1639]
Probab=99.47 E-value=1.1e-13 Score=135.54 Aligned_cols=181 Identities=21% Similarity=0.284 Sum_probs=134.5
Q ss_pred EEEeccCCcccCCcccCCCcceeEeeccCccccCCCchhhcCCCCCcEEEcCCCCCCCCChhhcCCCCCCEEEccCCccC
Q 003193 214 AISIPFRGIYELPERLGFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPSSLGCLINLRTLSLENCLVV 293 (840)
Q Consensus 214 ~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~l~~l~~L~~L~L~~~~~~ 293 (840)
.+++..+.+..+....++.+|+.|.+.++.+. .++ . +..+++|++|++++|.++.+++ +.++++|+++++++|.++
T Consensus 23 ~~~l~~~~~~d~~~~~~l~~L~~L~l~~~~i~-~l~-~-l~~l~~L~~L~ls~n~i~~~~~-l~~l~~l~~l~~~~n~~~ 98 (227)
T d1h6ua2 23 KIAAGKSNVTDTVTQADLDGITTLSAFGTGVT-TIE-G-VQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNPLK 98 (227)
T ss_dssp HHHTTCSSTTSEECHHHHHTCCEEECTTSCCC-CCT-T-GGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCCCS
T ss_pred HHHhCCCCcCCcCCHHHcCCcCEEECCCCCCC-cch-h-HhcCCCCcEeecCCceeecccc-cccccccccccccccccc
Confidence 33444444444433346788999999988876 453 3 4889999999999999988753 889999999999999988
Q ss_pred CcccccCCCCCCEEeecCCCCcccChhhcCCCCCCEEEccCCCCCCccCcccccCCCCCcEEEccCCcccceecCCCCCC
Q 003193 294 DVAIIGDLKKLEILSLKHSSIEQLPREIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGNSFTQWKVEGQSNAS 373 (840)
Q Consensus 294 ~~~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~L~~~~~l~~~p~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~ 373 (840)
..+.++++++|++++++++....++. +...+.++.+.++.+ .+...+. +.+.++|++|++.+|.+. .
T Consensus 99 ~i~~l~~l~~L~~l~l~~~~~~~~~~-~~~~~~~~~l~~~~~-~~~~~~~--~~~~~~L~~L~l~~n~~~---------~ 165 (227)
T d1h6ua2 99 NVSAIAGLQSIKTLDLTSTQITDVTP-LAGLSNLQVLYLDLN-QITNISP--LAGLTNLQYLSIGNAQVS---------D 165 (227)
T ss_dssp CCGGGTTCTTCCEEECTTSCCCCCGG-GTTCTTCCEEECCSS-CCCCCGG--GGGCTTCCEEECCSSCCC---------C
T ss_pred ccccccccccccccccccccccccch-hccccchhhhhchhh-hhchhhh--hccccccccccccccccc---------c
Confidence 87788999999999999987776653 677889999998874 4444433 678889999999888653 2
Q ss_pred cccccCCCCCCeEEEecCCCCCCCCcccccCcceEEEE
Q 003193 374 LGELKQLSRLTTLEVHIPDAQVMPQDLVFVELERFRIC 411 (840)
Q Consensus 374 l~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~ 411 (840)
...+.++++|+.|++++|.+..++.-..+++|+.|++.
T Consensus 166 ~~~l~~l~~L~~L~Ls~n~l~~l~~l~~l~~L~~L~Ls 203 (227)
T d1h6ua2 166 LTPLANLSKLTTLKADDNKISDISPLASLPNLIEVHLK 203 (227)
T ss_dssp CGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCCEEECT
T ss_pred chhhcccccceecccCCCccCCChhhcCCCCCCEEECc
Confidence 24477888999999998887766543344555555443
|
| >d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.43 E-value=4.1e-13 Score=116.32 Aligned_cols=100 Identities=23% Similarity=0.283 Sum_probs=52.8
Q ss_pred cEEEcCCCCCCCCChhhcCCCCCCEEEccCCccCC-cccccCCCCCCEEeecCCCCcccChhhcCCCCCCEEEccCCCCC
Q 003193 260 RVLDLTGFRFHSLPSSLGCLINLRTLSLENCLVVD-VAIIGDLKKLEILSLKHSSIEQLPREIGQLTCLKLLDLSNCSKL 338 (840)
Q Consensus 260 r~L~l~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~-~~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~L~~~~~l 338 (840)
|+|++++|.++.+| .++.+.+|++|++++|.++. |+.++.+++|++|++++|.++.+| .++++++|++|++++ +.+
T Consensus 1 R~L~Ls~n~l~~l~-~l~~l~~L~~L~ls~N~l~~lp~~~~~l~~L~~L~l~~N~i~~l~-~~~~l~~L~~L~l~~-N~i 77 (124)
T d1dcea3 1 RVLHLAHKDLTVLC-HLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVD-GVANLPRLQELLLCN-NRL 77 (124)
T ss_dssp SEEECTTSCCSSCC-CGGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCG-GGTTCSSCCEEECCS-SCC
T ss_pred CEEEcCCCCCCCCc-ccccCCCCCEEECCCCccCcchhhhhhhhcccccccccccccccC-ccccccccCeEECCC-Ccc
Confidence 45555555555554 25555555555555555555 444555555555555555555554 255555555555555 344
Q ss_pred CccCc-ccccCCCCCcEEEccCCcc
Q 003193 339 KEIRP-NVISNLTRLEELYMGNSFT 362 (840)
Q Consensus 339 ~~~p~-~~l~~L~~L~~L~l~~~~~ 362 (840)
..++. ..++.+++|++|++++|.+
T Consensus 78 ~~~~~~~~l~~~~~L~~L~l~~N~i 102 (124)
T d1dcea3 78 QQSAAIQPLVSCPRLVLLNLQGNSL 102 (124)
T ss_dssp CSSSTTGGGGGCTTCCEEECTTSGG
T ss_pred CCCCCchhhcCCCCCCEEECCCCcC
Confidence 44432 2245555555555555543
|
| >d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.42 E-value=4.7e-13 Score=115.90 Aligned_cols=117 Identities=21% Similarity=0.305 Sum_probs=93.3
Q ss_pred eeEeeccCccccCCCchhhcCCCCCcEEEcCCCCCCCCChhhcCCCCCCEEEccCCccCCcccccCCCCCCEEeecCCCC
Q 003193 235 KLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPSSLGCLINLRTLSLENCLVVDVAIIGDLKKLEILSLKHSSI 314 (840)
Q Consensus 235 ~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~~i~~L~~L~~L~l~~~~l 314 (840)
|+|++++|++. .++. +.++++|++|++++|.++.+|+.++.+++|++|++++|.++..+.++++++|++|++++|++
T Consensus 1 R~L~Ls~n~l~-~l~~--l~~l~~L~~L~ls~N~l~~lp~~~~~l~~L~~L~l~~N~i~~l~~~~~l~~L~~L~l~~N~i 77 (124)
T d1dcea3 1 RVLHLAHKDLT-VLCH--LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDGVANLPRLQELLLCNNRL 77 (124)
T ss_dssp SEEECTTSCCS-SCCC--GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCGGGTTCSSCCEEECCSSCC
T ss_pred CEEEcCCCCCC-CCcc--cccCCCCCEEECCCCccCcchhhhhhhhcccccccccccccccCccccccccCeEECCCCcc
Confidence 56777777765 4443 47889999999999999999988999999999999999998866799999999999999999
Q ss_pred cccC--hhhcCCCCCCEEEccCCCCCCccC---cccccCCCCCcEE
Q 003193 315 EQLP--REIGQLTCLKLLDLSNCSKLKEIR---PNVISNLTRLEEL 355 (840)
Q Consensus 315 ~~lp--~~i~~L~~L~~L~L~~~~~l~~~p---~~~l~~L~~L~~L 355 (840)
+.+| ..++.+++|++|++++ +.+...+ ...+..+++|+.|
T Consensus 78 ~~~~~~~~l~~~~~L~~L~l~~-N~i~~~~~~~~~l~~~lp~L~~L 122 (124)
T d1dcea3 78 QQSAAIQPLVSCPRLVLLNLQG-NSLCQEEGIQERLAEMLPSVSSI 122 (124)
T ss_dssp CSSSTTGGGGGCTTCCEEECTT-SGGGGSSSCTTHHHHHCTTCSEE
T ss_pred CCCCCchhhcCCCCCCEEECCC-CcCCcCccHHHHHHHHCcCcceE
Confidence 8876 4678899999999998 5554433 3334446666655
|
| >d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Cyclin A/CDK2-associated p19, Skp2 domain: Cyclin A/CDK2-associated p19, Skp2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.41 E-value=1e-13 Score=140.35 Aligned_cols=83 Identities=24% Similarity=0.374 Sum_probs=42.8
Q ss_pred CCCCCCEEEccCCccCC---cccccCCCCCCEEeecCCCCc-ccChhhcCCCCCCEEEccCCCCCCccCc-ccccCCCCC
Q 003193 278 CLINLRTLSLENCLVVD---VAIIGDLKKLEILSLKHSSIE-QLPREIGQLTCLKLLDLSNCSKLKEIRP-NVISNLTRL 352 (840)
Q Consensus 278 ~l~~L~~L~L~~~~~~~---~~~i~~L~~L~~L~l~~~~l~-~lp~~i~~L~~L~~L~L~~~~~l~~~p~-~~l~~L~~L 352 (840)
....|++|++++|.+.. ...+.++++|++|++++|.++ ..+..++++++|++|++++|+.++...- .....+++|
T Consensus 44 ~~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L 123 (284)
T d2astb2 44 SPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRL 123 (284)
T ss_dssp CCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTC
T ss_pred cCCCCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhc
Confidence 34456666666655443 233455566666666666554 3344455566666666666555543211 112345555
Q ss_pred cEEEccCC
Q 003193 353 EELYMGNS 360 (840)
Q Consensus 353 ~~L~l~~~ 360 (840)
++|++++|
T Consensus 124 ~~L~ls~c 131 (284)
T d2astb2 124 DELNLSWC 131 (284)
T ss_dssp CEEECCCC
T ss_pred cccccccc
Confidence 55555554
|
| >d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: U2A'-like domain: Splicesomal U2A' protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.38 E-value=3.3e-13 Score=123.17 Aligned_cols=108 Identities=19% Similarity=0.236 Sum_probs=74.6
Q ss_pred cCCCCCcEEEcCCCCCCCCChhhcCCCCCCEEEccCCccCCcccccCCCCCCEEeecCCCCcccChhh-cCCCCCCEEEc
Q 003193 254 EGMTELRVLDLTGFRFHSLPSSLGCLINLRTLSLENCLVVDVAIIGDLKKLEILSLKHSSIEQLPREI-GQLTCLKLLDL 332 (840)
Q Consensus 254 ~~l~~Lr~L~l~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~~i~~L~~L~~L~l~~~~l~~lp~~i-~~L~~L~~L~L 332 (840)
.+...+|.|++++|.++.+|..+..+.+|++|++++|.+...+.+..+++|++|++++|+++.+|..+ ..+++|++|++
T Consensus 15 ~n~~~lr~L~L~~n~I~~i~~~~~~l~~L~~L~Ls~N~i~~l~~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L~~L~L 94 (162)
T d1a9na_ 15 TNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELIL 94 (162)
T ss_dssp ECTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEECCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEEC
T ss_pred cCcCcCcEEECCCCCCCccCccccccccCCEEECCCCCCCccCCcccCcchhhhhcccccccCCCcccccccccccccee
Confidence 45666777777777777776656667777777777777766556777777777777777777776543 45777777777
Q ss_pred cCCCCCCccCc-ccccCCCCCcEEEccCCcc
Q 003193 333 SNCSKLKEIRP-NVISNLTRLEELYMGNSFT 362 (840)
Q Consensus 333 ~~~~~l~~~p~-~~l~~L~~L~~L~l~~~~~ 362 (840)
++ +.+..++. ..+..+++|++|++++|.+
T Consensus 95 ~~-N~i~~~~~l~~l~~l~~L~~L~l~~N~i 124 (162)
T d1a9na_ 95 TN-NSLVELGDLDPLASLKSLTYLCILRNPV 124 (162)
T ss_dssp CS-CCCCCGGGGGGGGGCTTCCEEECCSSGG
T ss_pred cc-ccccccccccccccccccchhhcCCCcc
Confidence 77 45555543 2356677777777777754
|
| >d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Slit species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=99.37 E-value=3.9e-13 Score=127.38 Aligned_cols=120 Identities=20% Similarity=0.317 Sum_probs=64.9
Q ss_pred EEEeccCCcccCCcccCCCcceeEeeccCccccCCCchhhcCCCCCcEEEcCCCCCCCC-ChhhcCCCCCCEEEccCCcc
Q 003193 214 AISIPFRGIYELPERLGFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSL-PSSLGCLINLRTLSLENCLV 292 (840)
Q Consensus 214 ~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~l-p~~l~~l~~L~~L~L~~~~~ 292 (840)
.++.+++++..+|..+. +++++|++++|.+...++...|.++++|+.|++++|.+..+ +..+..+++|++|++++|++
T Consensus 12 ~v~Cs~~~L~~iP~~lp-~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~N~l 90 (192)
T d1w8aa_ 12 TVDCTGRGLKEIPRDIP-LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKI 90 (192)
T ss_dssp EEECTTSCCSSCCSCCC-TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCC
T ss_pred EEEEeCCCcCccCCCCC-CCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeeccccc
Confidence 45555566665655432 45555555555554444444455555666666655555543 34455555555555555555
Q ss_pred CC--cccccCCCCCCEEeecCCCCcccChh-hcCCCCCCEEEccC
Q 003193 293 VD--VAIIGDLKKLEILSLKHSSIEQLPRE-IGQLTCLKLLDLSN 334 (840)
Q Consensus 293 ~~--~~~i~~L~~L~~L~l~~~~l~~lp~~-i~~L~~L~~L~L~~ 334 (840)
.. +..|.++++|++|+|++|+|+.+|.. +..+++|++|++++
T Consensus 91 ~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~ 135 (192)
T d1w8aa_ 91 KEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLAS 135 (192)
T ss_dssp CEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTT
T ss_pred cccCHHHHhCCCcccccccCCccccccCHHHhcCCcccccccccc
Confidence 55 33455555555555555555555432 44555555555555
|
| >d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Cyclin A/CDK2-associated p19, Skp2 domain: Cyclin A/CDK2-associated p19, Skp2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.36 E-value=1.1e-13 Score=140.08 Aligned_cols=191 Identities=18% Similarity=0.149 Sum_probs=110.9
Q ss_pred ccccccceeecccccccccccccccccCCCCcccCCccEEEEecCCCcccccchhHHhhcccccEEEEecccccceeecc
Q 003193 498 GTFPLLESLFLHNLINLEKVCDGKVRLNEDDKSFSNLRIIKVEGCHRVKHLFPFSLVKNLLQLQKVKVTDCTNLKLIVGK 577 (840)
Q Consensus 498 ~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~ 577 (840)
....+|++|++++|.--....... ...+++|++|.+++|+ +.+. ....+..+++|++|++++|..+.+....
T Consensus 43 ~~~~~L~~LdLs~~~i~~~~l~~l------~~~c~~L~~L~L~~~~-l~~~-~~~~l~~~~~L~~L~Ls~c~~itd~~l~ 114 (284)
T d2astb2 43 FSPFRVQHMDLSNSVIEVSTLHGI------LSQCSKLQNLSLEGLR-LSDP-IVNTLAKNSNLVRLNLSGCSGFSEFALQ 114 (284)
T ss_dssp CCCBCCCEEECTTCEECHHHHHHH------HTTBCCCSEEECTTCB-CCHH-HHHHHTTCTTCSEEECTTCBSCCHHHHH
T ss_pred ccCCCCCEEECCCCccCHHHHHHH------HHhCCCcccccccccC-CCcH-HHHHHhcCCCCcCccccccccccccccc
Confidence 455678888888764211111111 2467888888888884 4332 1233456788888888888776532110
Q ss_pred ccccccccCCccccccccccceeecccCcccccccCCCCCCCccCCCCCcccccCCCCCcccccccccccCCcceEeccc
Q 003193 578 ESENSAHKNGSISGVYFRKLHFLKLQHLPQLTSSGFDLETPTNTQGSNPGIIAEGDPKDFTSLFNERVVFPSLKKLKLSS 657 (840)
Q Consensus 578 ~~~~~~~~~~~~~l~~l~~L~~L~l~~c~~L~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~ 657 (840)
. -...+|+|++|++++|.++..-.... ......++|+.|++++
T Consensus 115 ~-----------l~~~~~~L~~L~ls~c~~~~~~~~~~--------------------------~~~~~~~~L~~L~l~~ 157 (284)
T d2astb2 115 T-----------LLSSCSRLDELNLSWCFDFTEKHVQV--------------------------AVAHVSETITQLNLSG 157 (284)
T ss_dssp H-----------HHHHCTTCCEEECCCCTTCCHHHHHH--------------------------HHHHSCTTCCEEECCS
T ss_pred h-----------hhHHHHhccccccccccccccccchh--------------------------hhcccccccchhhhcc
Confidence 0 11257888888888887665311100 0011246788888887
Q ss_pred c--cchhhcccCCccccccCCCceEEEecccCCcceeechhhHhhhcccceeeecccccchhhhccCcccccCccccccc
Q 003193 658 I--NVEKIWLNSFSAIESWGKNLTKLTVEKCGRLKFLFSSSMVNGLEQLQQLDISHCKSMNEVINTRVGRDDNMIEMVFP 735 (840)
Q Consensus 658 c--~l~~~~~~~~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~~l~sL~~L~i~~C~~L~~i~~~~~~~~~~~~~~~l~ 735 (840)
| .+++.....+ ...+++|++|++++|+.+++-.. ..+..+++|++|++++|+.+++-. ...+ ..+|
T Consensus 158 ~~~~i~~~~l~~l---~~~~~~L~~L~L~~~~~itd~~~-~~l~~~~~L~~L~L~~C~~i~~~~--l~~L------~~~~ 225 (284)
T d2astb2 158 YRKNLQKSDLSTL---VRRCPNLVHLDLSDSVMLKNDCF-QEFFQLNYLQHLSLSRCYDIIPET--LLEL------GEIP 225 (284)
T ss_dssp CGGGSCHHHHHHH---HHHCTTCSEEECTTCTTCCGGGG-GGGGGCTTCCEEECTTCTTCCGGG--GGGG------GGCT
T ss_pred ccccccccccccc---ccccccccccccccccCCCchhh-hhhcccCcCCEEECCCCCCCChHH--HHHH------hcCC
Confidence 6 3433211111 23567788888888877765432 235567788888888887765321 1112 1267
Q ss_pred cccccccccC
Q 003193 736 KLVSLQLSHL 745 (840)
Q Consensus 736 sL~~L~i~~c 745 (840)
+|+.|++++|
T Consensus 226 ~L~~L~l~~~ 235 (284)
T d2astb2 226 TLKTLQVFGI 235 (284)
T ss_dssp TCCEEECTTS
T ss_pred CCCEEeeeCC
Confidence 7777777777
|
| >d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Follicle-stimulating hormone receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.36 E-value=2.2e-12 Score=127.50 Aligned_cols=98 Identities=18% Similarity=0.257 Sum_probs=43.2
Q ss_pred EEEcCCCCCCCCChhhcCCCCCCEEEccCCccCC-c-ccccCCCCCCEEeecCCCCcc-cC-hhhcCCCCCCEEEccCCC
Q 003193 261 VLDLTGFRFHSLPSSLGCLINLRTLSLENCLVVD-V-AIIGDLKKLEILSLKHSSIEQ-LP-REIGQLTCLKLLDLSNCS 336 (840)
Q Consensus 261 ~L~l~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~-~-~~i~~L~~L~~L~l~~~~l~~-lp-~~i~~L~~L~~L~L~~~~ 336 (840)
+++.++..++.+|+.+. .++++|++++|.++. + ..+.++++|++|++++|.+.. +| ..+..+++++++.+..++
T Consensus 12 ~i~c~~~~l~~iP~~l~--~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n 89 (242)
T d1xwdc1 12 VFLCQESKVTEIPSDLP--RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKAN 89 (242)
T ss_dssp EEEEESCSCSSCCSCSC--SCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCT
T ss_pred EEEEeCCCCCCcCCCCC--CCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeeccccccccccccccccccc
Confidence 44444444444443331 244444444444444 2 234444444444444444332 21 223444555555444444
Q ss_pred CCCccCcccccCCCCCcEEEccCC
Q 003193 337 KLKEIRPNVISNLTRLEELYMGNS 360 (840)
Q Consensus 337 ~l~~~p~~~l~~L~~L~~L~l~~~ 360 (840)
.+..++...+.++++|++|++.++
T Consensus 90 ~l~~~~~~~~~~l~~L~~l~l~~~ 113 (242)
T d1xwdc1 90 NLLYINPEAFQNLPNLQYLLISNT 113 (242)
T ss_dssp TCCEECTTSEECCTTCCEEEEESC
T ss_pred cccccccccccccccccccccchh
Confidence 444444444444555555555444
|
| >d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: U2A'-like domain: Splicesomal U2A' protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.35 E-value=3.5e-13 Score=123.08 Aligned_cols=128 Identities=16% Similarity=0.159 Sum_probs=90.5
Q ss_pred CCcccCCCcceeEeeccCccccCCCchhhcCCCCCcEEEcCCCCCCCCChhhcCCCCCCEEEccCCccCC-ccc-ccCCC
Q 003193 225 LPERLGFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPSSLGCLINLRTLSLENCLVVD-VAI-IGDLK 302 (840)
Q Consensus 225 l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~-~~~-i~~L~ 302 (840)
.+...+..++|.|++++|.+. .++ .++..+++|++|++++|.+++++ .+..+++|++|++++|.++. ++. +..++
T Consensus 11 ~~~~~n~~~lr~L~L~~n~I~-~i~-~~~~~l~~L~~L~Ls~N~i~~l~-~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~ 87 (162)
T d1a9na_ 11 AAQYTNAVRDRELDLRGYKIP-VIE-NLGATLDQFDAIDFSDNEIRKLD-GFPLLRRLKTLLVNNNRICRIGEGLDQALP 87 (162)
T ss_dssp SCEEECTTSCEEEECTTSCCC-SCC-CGGGGTTCCSEEECCSSCCCEEC-CCCCCSSCCEEECCSSCCCEECSCHHHHCT
T ss_pred hHhccCcCcCcEEECCCCCCC-ccC-ccccccccCCEEECCCCCCCccC-CcccCcchhhhhcccccccCCCcccccccc
Confidence 344445667777777777765 344 34467778888888888887774 47778888888888888777 433 45688
Q ss_pred CCCEEeecCCCCcccCh--hhcCCCCCCEEEccCCCCCCccCc---ccccCCCCCcEEE
Q 003193 303 KLEILSLKHSSIEQLPR--EIGQLTCLKLLDLSNCSKLKEIRP---NVISNLTRLEELY 356 (840)
Q Consensus 303 ~L~~L~l~~~~l~~lp~--~i~~L~~L~~L~L~~~~~l~~~p~---~~l~~L~~L~~L~ 356 (840)
+|++|++++|+++.++. .+..+++|++|++++ +.+...|. ..++.+++|+.|+
T Consensus 88 ~L~~L~L~~N~i~~~~~l~~l~~l~~L~~L~l~~-N~i~~~~~~r~~~i~~lp~L~~LD 145 (162)
T d1a9na_ 88 DLTELILTNNSLVELGDLDPLASLKSLTYLCILR-NPVTNKKHYRLYVIYKVPQVRVLD 145 (162)
T ss_dssp TCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCS-SGGGGSTTHHHHHHHHCTTCSEET
T ss_pred ccccceeccccccccccccccccccccchhhcCC-CccccccchHHHHHHHCCCcCeeC
Confidence 88888888888877763 567788888888888 45665552 2356777887776
|
| >d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Slit species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=99.31 E-value=4.7e-12 Score=119.77 Aligned_cols=123 Identities=18% Similarity=0.196 Sum_probs=83.5
Q ss_pred eeEeeccCccccCCCchhhcCCCCCcEEEcCCCCCCC-C-ChhhcCCCCCCEEEccCCccCC--cccccCCCCCCEEeec
Q 003193 235 KLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHS-L-PSSLGCLINLRTLSLENCLVVD--VAIIGDLKKLEILSLK 310 (840)
Q Consensus 235 ~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~-l-p~~l~~l~~L~~L~L~~~~~~~--~~~i~~L~~L~~L~l~ 310 (840)
++++.+++++. .+|.++ ..++++|+|++|.++. + +..|.++++|+.|++++|.+.. +..+..+++|++|+++
T Consensus 11 ~~v~Cs~~~L~-~iP~~l---p~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls 86 (192)
T d1w8aa_ 11 TTVDCTGRGLK-EIPRDI---PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLG 86 (192)
T ss_dssp TEEECTTSCCS-SCCSCC---CTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred CEEEEeCCCcC-ccCCCC---CCCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeec
Confidence 35566666554 566554 2467777777777753 3 3456777777777777777766 4666777777777777
Q ss_pred CCCCcccCh-hhcCCCCCCEEEccCCCCCCccCcccccCCCCCcEEEccCCcc
Q 003193 311 HSSIEQLPR-EIGQLTCLKLLDLSNCSKLKEIRPNVISNLTRLEELYMGNSFT 362 (840)
Q Consensus 311 ~~~l~~lp~-~i~~L~~L~~L~L~~~~~l~~~p~~~l~~L~~L~~L~l~~~~~ 362 (840)
+|+++.+|. .+.++++|++|+|++ +.++.+|++.+..+++|++|++++|.+
T Consensus 87 ~N~l~~l~~~~F~~l~~L~~L~L~~-N~l~~i~~~~f~~l~~L~~l~L~~N~~ 138 (192)
T d1w8aa_ 87 ENKIKEISNKMFLGLHQLKTLNLYD-NQISCVMPGSFEHLNSLTSLNLASNPF 138 (192)
T ss_dssp SCCCCEECSSSSTTCTTCCEEECCS-SCCCEECTTSSTTCTTCCEEECTTCCB
T ss_pred cccccccCHHHHhCCCcccccccCC-ccccccCHHHhcCCccccccccccccc
Confidence 777777754 356777777777777 567777776667777777777776644
|
| >d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Follicle-stimulating hormone receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.27 E-value=1.7e-11 Score=120.88 Aligned_cols=94 Identities=14% Similarity=0.198 Sum_probs=42.8
Q ss_pred chhhhhhccCCCcEEEeccCCcccCCcc--cCCCcceeEeeccCccccCCCchhhcCCCCCcEEEcCC-CCCCCC-Chhh
Q 003193 201 LKEELDKIDEAPTAISIPFRGIYELPER--LGFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTG-FRFHSL-PSSL 276 (840)
Q Consensus 201 ~~~~~~~~~~~l~~L~l~~~~~~~l~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~l~~-~~~~~l-p~~l 276 (840)
+..+|...+.+++.|++++|.+..+|.. .++++|++|++++|.+...++...|.+++.++++++.. +.+..+ +..+
T Consensus 20 l~~iP~~l~~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n~l~~~~~~~~ 99 (242)
T d1xwdc1 20 VTEIPSDLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAF 99 (242)
T ss_dssp CSSCCSCSCSCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCTTCCEECTTSE
T ss_pred CCCcCCCCCCCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeeccccccccccccccccccccccccccccc
Confidence 3333433344555555555555444432 14455555555555444334444444455555554432 233322 2334
Q ss_pred cCCCCCCEEEccCCccCC
Q 003193 277 GCLINLRTLSLENCLVVD 294 (840)
Q Consensus 277 ~~l~~L~~L~L~~~~~~~ 294 (840)
.++++|++|++++|.+..
T Consensus 100 ~~l~~L~~l~l~~~~l~~ 117 (242)
T d1xwdc1 100 QNLPNLQYLLISNTGIKH 117 (242)
T ss_dssp ECCTTCCEEEEESCCCCS
T ss_pred cccccccccccchhhhcc
Confidence 455555555555554444
|
| >d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: Outer arm dynein light chain 1 family: Outer arm dynein light chain 1 domain: Outer arm dynein light chain 1 species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]
Probab=99.09 E-value=1.2e-12 Score=124.07 Aligned_cols=106 Identities=25% Similarity=0.332 Sum_probs=65.4
Q ss_pred cCCCCCcEEEcCCCCCCCCChhhcCCCCCCEEEccCCccCC-cccccCCCCCCEEeecCCCCcccChhhcCCCCCCEEEc
Q 003193 254 EGMTELRVLDLTGFRFHSLPSSLGCLINLRTLSLENCLVVD-VAIIGDLKKLEILSLKHSSIEQLPREIGQLTCLKLLDL 332 (840)
Q Consensus 254 ~~l~~Lr~L~l~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~-~~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~L 332 (840)
..+++|++|++++|.++.++ .+..+++|++|++++|.++. +.....+.+|++|++++|.++.++ .+.++++|++|++
T Consensus 45 ~~L~~L~~L~Ls~n~I~~i~-~l~~l~~L~~L~Ls~N~i~~i~~~~~~~~~L~~L~l~~N~i~~l~-~~~~l~~L~~L~L 122 (198)
T d1m9la_ 45 STLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLS-GIEKLVNLRVLYM 122 (198)
T ss_dssp HHTTTCCEEECSEEEESCCC-CHHHHTTCCEEECCEEEECSCSSHHHHHHHCCEEECSEEECCCHH-HHHHHHHSSEEEE
T ss_pred hcccccceeECcccCCCCcc-cccCCccccChhhcccccccccccccccccccccccccccccccc-ccccccccccccc
Confidence 55666666666666666664 46666666666666666666 333344456666666666666654 3666666777776
Q ss_pred cCCCCCCccCc-ccccCCCCCcEEEccCCcc
Q 003193 333 SNCSKLKEIRP-NVISNLTRLEELYMGNSFT 362 (840)
Q Consensus 333 ~~~~~l~~~p~-~~l~~L~~L~~L~l~~~~~ 362 (840)
++ +.+..++. ..++.+++|++|++++|.+
T Consensus 123 ~~-N~i~~~~~~~~l~~l~~L~~L~L~~N~l 152 (198)
T d1m9la_ 123 SN-NKITNWGEIDKLAALDKLEDLLLAGNPL 152 (198)
T ss_dssp SE-EECCCHHHHHHHTTTTTCSEEEECSSHH
T ss_pred cc-chhccccccccccCCCccceeecCCCcc
Confidence 66 45555442 2256666777777766654
|
| >d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: Outer arm dynein light chain 1 family: Outer arm dynein light chain 1 domain: Outer arm dynein light chain 1 species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]
Probab=99.09 E-value=2.1e-12 Score=122.24 Aligned_cols=122 Identities=19% Similarity=0.221 Sum_probs=90.0
Q ss_pred CCcEEEeccC--CcccCCccc-CCCcceeEeeccCccccCCCchhhcCCCCCcEEEcCCCCCCCCChhhcCCCCCCEEEc
Q 003193 211 APTAISIPFR--GIYELPERL-GFLKLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFHSLPSSLGCLINLRTLSL 287 (840)
Q Consensus 211 ~l~~L~l~~~--~~~~l~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~l~~l~~L~~L~L 287 (840)
..+.+++.+. .+..++..+ .+++|+.|++++|.+. .++. +.++++|++|++++|.++.+|..+..+++|++|++
T Consensus 24 ~~~~~~l~~~~~~i~~l~~sl~~L~~L~~L~Ls~n~I~-~i~~--l~~l~~L~~L~Ls~N~i~~i~~~~~~~~~L~~L~l 100 (198)
T d1m9la_ 24 EAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIE-KISS--LSGMENLRILSLGRNLIKKIENLDAVADTLEELWI 100 (198)
T ss_dssp TCSCEECCBCCTTCCCCHHHHHHTTTCCEEECSEEEES-CCCC--HHHHTTCCEEECCEEEECSCSSHHHHHHHCCEEEC
T ss_pred ccceeeeecccCchhhhhhHHhcccccceeECcccCCC-Cccc--ccCCccccChhhccccccccccccccccccccccc
Confidence 3455555543 234444444 6788888888888765 4442 47788888888888888888766666677888888
Q ss_pred cCCccCCcccccCCCCCCEEeecCCCCcccC--hhhcCCCCCCEEEccCC
Q 003193 288 ENCLVVDVAIIGDLKKLEILSLKHSSIEQLP--REIGQLTCLKLLDLSNC 335 (840)
Q Consensus 288 ~~~~~~~~~~i~~L~~L~~L~l~~~~l~~lp--~~i~~L~~L~~L~L~~~ 335 (840)
++|.++.++.+.++++|++|++++|+++.++ ..+..+++|++|++++|
T Consensus 101 ~~N~i~~l~~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N 150 (198)
T d1m9la_ 101 SYNQIASLSGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGN 150 (198)
T ss_dssp SEEECCCHHHHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSS
T ss_pred ccccccccccccccccccccccccchhccccccccccCCCccceeecCCC
Confidence 8888887666778888888888888888776 35788888888888884
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.03 E-value=1.4e-12 Score=142.44 Aligned_cols=102 Identities=22% Similarity=0.216 Sum_probs=53.0
Q ss_pred cceeEeeccCccccCCCchhhcCCCCCcEEEcCCCCCC-----CCChhhcCCCCCCEEEccCCccCC--ccccc-----C
Q 003193 233 KLKLFLFFTENLSLQIPDPFFEGMTELRVLDLTGFRFH-----SLPSSLGCLINLRTLSLENCLVVD--VAIIG-----D 300 (840)
Q Consensus 233 ~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~-----~lp~~l~~l~~L~~L~L~~~~~~~--~~~i~-----~ 300 (840)
+|+.|+++++++....-..++..++++|+|+|++|.++ .++..+..+++|++|+|++|.+++ ...+. .
T Consensus 3 ~l~~ld~~~~~i~~~~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~~ 82 (460)
T d1z7xw1 3 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTP 82 (460)
T ss_dssp EEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCST
T ss_pred CCCEEEeeCCcCChHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHhcC
Confidence 45566666555543222333455566666666666654 234445566666666666665543 11111 1
Q ss_pred CCCCCEEeecCCCCcc-----cChhhcCCCCCCEEEccC
Q 003193 301 LKKLEILSLKHSSIEQ-----LPREIGQLTCLKLLDLSN 334 (840)
Q Consensus 301 L~~L~~L~l~~~~l~~-----lp~~i~~L~~L~~L~L~~ 334 (840)
..+|++|++++|.++. ++..+..+++|++|++++
T Consensus 83 ~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~ 121 (460)
T d1z7xw1 83 SCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSD 121 (460)
T ss_dssp TCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCS
T ss_pred CCCCCEEECCCCCccccccccccchhhcccccccccccc
Confidence 2346666666665542 334445555666666655
|
| >d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: High affinity nerve growth factor receptor, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.87 E-value=5.4e-09 Score=93.96 Aligned_cols=103 Identities=19% Similarity=0.120 Sum_probs=75.9
Q ss_pred CCcEEEcCCCCCCCCChhhcCCCCCCEEEccCCc-cCC--cccccCCCCCCEEeecCCCCcccC-hhhcCCCCCCEEEcc
Q 003193 258 ELRVLDLTGFRFHSLPSSLGCLINLRTLSLENCL-VVD--VAIIGDLKKLEILSLKHSSIEQLP-REIGQLTCLKLLDLS 333 (840)
Q Consensus 258 ~Lr~L~l~~~~~~~lp~~l~~l~~L~~L~L~~~~-~~~--~~~i~~L~~L~~L~l~~~~l~~lp-~~i~~L~~L~~L~L~ 333 (840)
....++.+++.+.+.|..+..+++|+.|++++++ ++. +..|.++++|+.|++++|+|+.++ ..+..+++|++|+|+
T Consensus 9 ~~~~l~c~~~~~~~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls 88 (156)
T d2ifga3 9 GSSGLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS 88 (156)
T ss_dssp SSSCEECCSSCCCTTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred CCCeEEecCCCCccCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceecc
Confidence 3455677777777777777778888888887654 655 456778888888888888888774 447788888888888
Q ss_pred CCCCCCccCcccccCCCCCcEEEccCCcc
Q 003193 334 NCSKLKEIRPNVISNLTRLEELYMGNSFT 362 (840)
Q Consensus 334 ~~~~l~~~p~~~l~~L~~L~~L~l~~~~~ 362 (840)
+ +.++.+|.+.+.. .+|++|++++|.+
T Consensus 89 ~-N~l~~l~~~~~~~-~~l~~L~L~~Np~ 115 (156)
T d2ifga3 89 F-NALESLSWKTVQG-LSLQELVLSGNPL 115 (156)
T ss_dssp S-SCCSCCCSTTTCS-CCCCEEECCSSCC
T ss_pred C-CCCcccChhhhcc-ccccccccCCCcc
Confidence 8 6788888775544 3688888877754
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.84 E-value=3.7e-11 Score=130.93 Aligned_cols=104 Identities=17% Similarity=0.310 Sum_probs=70.9
Q ss_pred CCcEEEcCCCCCCC--CChhhcCCCCCCEEEccCCccCC------cccccCCCCCCEEeecCCCCcc-----cChhhc-C
Q 003193 258 ELRVLDLTGFRFHS--LPSSLGCLINLRTLSLENCLVVD------VAIIGDLKKLEILSLKHSSIEQ-----LPREIG-Q 323 (840)
Q Consensus 258 ~Lr~L~l~~~~~~~--lp~~l~~l~~L~~L~L~~~~~~~------~~~i~~L~~L~~L~l~~~~l~~-----lp~~i~-~ 323 (840)
+|++||+++++++. +.+-+..++++|+|+|++|.+++ ...+..+++|++||+++|.++. +...+. .
T Consensus 3 ~l~~ld~~~~~i~~~~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~~ 82 (460)
T d1z7xw1 3 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTP 82 (460)
T ss_dssp EEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCST
T ss_pred CCCEEEeeCCcCChHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHhcC
Confidence 57899999998874 34556678889999999998765 2345678888888888887752 222222 2
Q ss_pred CCCCCEEEccCCCCCCccC----cccccCCCCCcEEEccCCcc
Q 003193 324 LTCLKLLDLSNCSKLKEIR----PNVISNLTRLEELYMGNSFT 362 (840)
Q Consensus 324 L~~L~~L~L~~~~~l~~~p----~~~l~~L~~L~~L~l~~~~~ 362 (840)
..+|++|++++| .++... ...+..+++|++|++++|.+
T Consensus 83 ~~~L~~L~L~~n-~it~~~~~~l~~~l~~~~~L~~L~L~~N~i 124 (460)
T d1z7xw1 83 SCKIQKLSLQNC-CLTGAGCGVLSSTLRTLPTLQELHLSDNLL 124 (460)
T ss_dssp TCCCCEEECTTS-CCBGGGHHHHHHHTTSCTTCCEEECCSSBC
T ss_pred CCCCCEEECCCC-Cccccccccccchhhccccccccccccccc
Confidence 346888888885 454321 11256677888888877754
|
| >d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: High affinity nerve growth factor receptor, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.80 E-value=1.2e-08 Score=91.72 Aligned_cols=98 Identities=19% Similarity=0.121 Sum_probs=63.9
Q ss_pred eEeeccCccccCCCchhhcCCCCCcEEEcCCCC-CCCCC-hhhcCCCCCCEEEccCCccCC--cccccCCCCCCEEeecC
Q 003193 236 LFLFFTENLSLQIPDPFFEGMTELRVLDLTGFR-FHSLP-SSLGCLINLRTLSLENCLVVD--VAIIGDLKKLEILSLKH 311 (840)
Q Consensus 236 ~L~l~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~-~~~lp-~~l~~l~~L~~L~L~~~~~~~--~~~i~~L~~L~~L~l~~ 311 (840)
++.+.++... ..|..+ ..+++|+.|++++++ ++.++ ..|.++++|+.|++++|.++. +..+..+++|++|+|++
T Consensus 12 ~l~c~~~~~~-~~p~~l-~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~ 89 (156)
T d2ifga3 12 GLRCTRDGAL-DSLHHL-PGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF 89 (156)
T ss_dssp CEECCSSCCC-TTTTTS-CSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred eEEecCCCCc-cCcccc-cCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceeccC
Confidence 3444444433 334443 556677777776553 66664 346777777777777777766 45577777777777777
Q ss_pred CCCcccChhhcCCCCCCEEEccCC
Q 003193 312 SSIEQLPREIGQLTCLKLLDLSNC 335 (840)
Q Consensus 312 ~~l~~lp~~i~~L~~L~~L~L~~~ 335 (840)
|+++.+|..+....+|++|+++++
T Consensus 90 N~l~~l~~~~~~~~~l~~L~L~~N 113 (156)
T d2ifga3 90 NALESLSWKTVQGLSLQELVLSGN 113 (156)
T ss_dssp SCCSCCCSTTTCSCCCCEEECCSS
T ss_pred CCCcccChhhhccccccccccCCC
Confidence 777777776655567777777773
|
| >d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Rna1p (RanGAP1), N-terminal domain domain: Rna1p (RanGAP1), N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=98.53 E-value=1.8e-08 Score=104.43 Aligned_cols=183 Identities=16% Similarity=0.083 Sum_probs=108.8
Q ss_pred ccCCCcEEEeccCCccc-----CCccc-CCCcceeEeeccCcccc---CCCc------hhhcCCCCCcEEEcCCCCCCC-
Q 003193 208 IDEAPTAISIPFRGIYE-----LPERL-GFLKLKLFLFFTENLSL---QIPD------PFFEGMTELRVLDLTGFRFHS- 271 (840)
Q Consensus 208 ~~~~l~~L~l~~~~~~~-----l~~~~-~~~~L~~L~l~~~~~~~---~~~~------~~~~~l~~Lr~L~l~~~~~~~- 271 (840)
...+++.|++++|.+.. +...+ ..++|+.+.+.++.... ..+. ..+...++|+.|++++|.+..
T Consensus 29 ~~~~l~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~ 108 (344)
T d2ca6a1 29 EDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPT 108 (344)
T ss_dssp HCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTT
T ss_pred hCCCCCEEECcCCcCCHHHHHHHHHHHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCcccccccccccccc
Confidence 35677888888876632 22222 56778888876554221 1111 123566788888888887753
Q ss_pred ----CChhhcCCCCCCEEEccCCccCC--cc-------------cccCCCCCCEEeecCCCCc-----ccChhhcCCCCC
Q 003193 272 ----LPSSLGCLINLRTLSLENCLVVD--VA-------------IIGDLKKLEILSLKHSSIE-----QLPREIGQLTCL 327 (840)
Q Consensus 272 ----lp~~l~~l~~L~~L~L~~~~~~~--~~-------------~i~~L~~L~~L~l~~~~l~-----~lp~~i~~L~~L 327 (840)
+...+...++|+.|++++|.+.. .. .....+.|+.+++++|.++ .+...+...++|
T Consensus 109 ~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~~l~~~l~~~~~L 188 (344)
T d2ca6a1 109 AQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLL 188 (344)
T ss_dssp THHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTC
T ss_pred cccchhhhhcccccchheecccccccccccccccccccccccccccccCcccceeecccccccccccccccchhhhhhhh
Confidence 34455667888888888876543 11 1134567888888877665 334456667788
Q ss_pred CEEEccCCCCCCcc-----CcccccCCCCCcEEEccCCcccceecCCCCCCcccccCCCCCCeEEEecCCCC
Q 003193 328 KLLDLSNCSKLKEI-----RPNVISNLTRLEELYMGNSFTQWKVEGQSNASLGELKQLSRLTTLEVHIPDAQ 394 (840)
Q Consensus 328 ~~L~L~~~~~l~~~-----p~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~l~~L~~L~l~~~~~~ 394 (840)
+.|++++| .+..- ....+...++|++|++++|.+..... ......+...++|+.|++++|.+.
T Consensus 189 ~~L~L~~n-~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~---~~L~~~l~~~~~L~~L~Ls~n~i~ 256 (344)
T d2ca6a1 189 HTVKMVQN-GIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGS---SALAIALKSWPNLRELGLNDCLLS 256 (344)
T ss_dssp CEEECCSS-CCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHH---HHHHHHGGGCTTCCEEECTTCCCC
T ss_pred cccccccc-cccccccccchhhhhcchhhhccccccccccccccc---ccccccccccccchhhhhhcCccC
Confidence 88888774 34321 11225667788888887775432100 011134556677777777766543
|
| >d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Rna1p (RanGAP1), N-terminal domain domain: Rna1p (RanGAP1), N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=98.22 E-value=1.7e-07 Score=96.91 Aligned_cols=182 Identities=13% Similarity=0.109 Sum_probs=108.5
Q ss_pred cCCCcEEEeccCCcccC-----Cccc-CCCcceeEeeccCccccCCCc------------hhhcCCCCCcEEEcCCCCCC
Q 003193 209 DEAPTAISIPFRGIYEL-----PERL-GFLKLKLFLFFTENLSLQIPD------------PFFEGMTELRVLDLTGFRFH 270 (840)
Q Consensus 209 ~~~l~~L~l~~~~~~~l-----~~~~-~~~~L~~L~l~~~~~~~~~~~------------~~~~~l~~Lr~L~l~~~~~~ 270 (840)
.++++.|+++.|.+... ...+ ..++|+.|.+++|.+...-.. ......+.|+.|++++|.+.
T Consensus 92 ~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~i~ 171 (344)
T d2ca6a1 92 CPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLE 171 (344)
T ss_dssp CTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCT
T ss_pred CCCcccccccccccccccccchhhhhcccccchheecccccccccccccccccccccccccccccCcccceeeccccccc
Confidence 34577788877766432 1111 467788888877754211000 01235667888888887765
Q ss_pred C-----CChhhcCCCCCCEEEccCCccCC-------cccccCCCCCCEEeecCCCCc-----ccChhhcCCCCCCEEEcc
Q 003193 271 S-----LPSSLGCLINLRTLSLENCLVVD-------VAIIGDLKKLEILSLKHSSIE-----QLPREIGQLTCLKLLDLS 333 (840)
Q Consensus 271 ~-----lp~~l~~l~~L~~L~L~~~~~~~-------~~~i~~L~~L~~L~l~~~~l~-----~lp~~i~~L~~L~~L~L~ 333 (840)
. +...+...++|++|++++|.+.. ...+...++|++|++++|.++ .+...+...++|++|+++
T Consensus 172 ~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls 251 (344)
T d2ca6a1 172 NGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLN 251 (344)
T ss_dssp GGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECT
T ss_pred ccccccccchhhhhhhhcccccccccccccccccchhhhhcchhhhcccccccccccccccccccccccccccchhhhhh
Confidence 2 34456677788888888887664 134667788888888888765 345566778888888888
Q ss_pred CCCCCCccCccc----ccC--CCCCcEEEccCCcccceecCCCCCCccccc-CCCCCCeEEEecCCCC
Q 003193 334 NCSKLKEIRPNV----ISN--LTRLEELYMGNSFTQWKVEGQSNASLGELK-QLSRLTTLEVHIPDAQ 394 (840)
Q Consensus 334 ~~~~l~~~p~~~----l~~--L~~L~~L~l~~~~~~~~~~~~~~~~l~~l~-~l~~L~~L~l~~~~~~ 394 (840)
+| .++...... +.+ ...|++|++++|.+..... ......+. +.++|+.|++++|.+.
T Consensus 252 ~n-~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~i~~~~~---~~l~~~l~~~~~~L~~L~l~~N~~~ 315 (344)
T d2ca6a1 252 DC-LLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAV---RTLKTVIDEKMPDLLFLELNGNRFS 315 (344)
T ss_dssp TC-CCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHH---HHHHHHHHHHCTTCCEEECTTSBSC
T ss_pred cC-ccCchhhHHHHHHhhhccCCCCCEEECCCCcCChHHH---HHHHHHHHccCCCCCEEECCCCcCC
Confidence 85 343321111 222 3568888888876532100 00112222 4567888888777654
|
| >d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: mRNA export factor tap domain: mRNA export factor tap species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.64 E-value=1.3e-06 Score=78.64 Aligned_cols=64 Identities=28% Similarity=0.209 Sum_probs=36.0
Q ss_pred hhcCCCCCcEEEcCCCCCCCCC---hhhcCCCCCCEEEccCCccCCcccc--cCCCCCCEEeecCCCCc
Q 003193 252 FFEGMTELRVLDLTGFRFHSLP---SSLGCLINLRTLSLENCLVVDVAII--GDLKKLEILSLKHSSIE 315 (840)
Q Consensus 252 ~~~~l~~Lr~L~l~~~~~~~lp---~~l~~l~~L~~L~L~~~~~~~~~~i--~~L~~L~~L~l~~~~l~ 315 (840)
++.++++|++|++++|+++.++ ..+..+++|++|++++|.+++.+.+ .+..+|+.|++++|.+.
T Consensus 60 ~~~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~ 128 (162)
T d1koha1 60 IEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLS 128 (162)
T ss_dssp HHHHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTS
T ss_pred HHHhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcC
Confidence 3355666777777777666543 3345566666666666666652221 12234566666666554
|
| >d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: mRNA export factor tap domain: mRNA export factor tap species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.63 E-value=6.5e-07 Score=80.62 Aligned_cols=59 Identities=20% Similarity=0.176 Sum_probs=33.7
Q ss_pred hcCCCCCCEEEccCCccCCc----ccccCCCCCCEEeecCCCCcccCh-hhcCCCCCCEEEccC
Q 003193 276 LGCLINLRTLSLENCLVVDV----AIIGDLKKLEILSLKHSSIEQLPR-EIGQLTCLKLLDLSN 334 (840)
Q Consensus 276 l~~l~~L~~L~L~~~~~~~~----~~i~~L~~L~~L~l~~~~l~~lp~-~i~~L~~L~~L~L~~ 334 (840)
..++++|++|+|++|.++.. ..+..+++|++|++++|.|+.++. ...+..+|+.|++++
T Consensus 61 ~~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~ 124 (162)
T d1koha1 61 EENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDG 124 (162)
T ss_dssp HHHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTT
T ss_pred HHhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCC
Confidence 34566667777776666552 234456666666666666666553 122334566666666
|
| >d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Tropomodulin C-terminal domain species: nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=96.85 E-value=0.00047 Score=61.51 Aligned_cols=81 Identities=20% Similarity=0.272 Sum_probs=41.8
Q ss_pred cCCCCCcEEEcCCC-CCC-----CCChhhcCCCCCCEEEccCCccCC--c----ccccCCCCCCEEeecCCCCc-----c
Q 003193 254 EGMTELRVLDLTGF-RFH-----SLPSSLGCLINLRTLSLENCLVVD--V----AIIGDLKKLEILSLKHSSIE-----Q 316 (840)
Q Consensus 254 ~~l~~Lr~L~l~~~-~~~-----~lp~~l~~l~~L~~L~L~~~~~~~--~----~~i~~L~~L~~L~l~~~~l~-----~ 316 (840)
.+.+.|+.|+|+++ .++ .+-..+...++|++|++++|.+.. . ..+...+.|++|++++|.+. .
T Consensus 12 ~n~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~ 91 (167)
T d1pgva_ 12 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLAR 91 (167)
T ss_dssp TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHH
T ss_pred hCCCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHH
Confidence 34456666666653 233 122344555666666666666543 1 22334455666666666554 1
Q ss_pred cChhhcCCCCCCEEEccC
Q 003193 317 LPREIGQLTCLKLLDLSN 334 (840)
Q Consensus 317 lp~~i~~L~~L~~L~L~~ 334 (840)
+-..+..-++|++|++++
T Consensus 92 l~~aL~~n~sL~~L~l~~ 109 (167)
T d1pgva_ 92 LLRSTLVTQSIVEFKADN 109 (167)
T ss_dssp HHHHTTTTCCCSEEECCC
T ss_pred HHHHHHhCCcCCEEECCC
Confidence 223344555566666654
|
| >d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Tropomodulin C-terminal domain species: nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=96.63 E-value=0.00072 Score=60.28 Aligned_cols=82 Identities=12% Similarity=0.062 Sum_probs=59.5
Q ss_pred hcCCCCCcEEEcCCCCCC-----CCChhhcCCCCCCEEEccCCccCC--c----ccccCCCCCCEEeecCCCCccc----
Q 003193 253 FEGMTELRVLDLTGFRFH-----SLPSSLGCLINLRTLSLENCLVVD--V----AIIGDLKKLEILSLKHSSIEQL---- 317 (840)
Q Consensus 253 ~~~l~~Lr~L~l~~~~~~-----~lp~~l~~l~~L~~L~L~~~~~~~--~----~~i~~L~~L~~L~l~~~~l~~l---- 317 (840)
+...+.|++|++++|.+. .+...+...+.|+.|++++|.+.. . ..+..-+.|++|++++|.+..+
T Consensus 40 L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l~~aL~~n~sL~~L~l~~n~~~~~g~~~ 119 (167)
T d1pgva_ 40 ACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQV 119 (167)
T ss_dssp HTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHH
T ss_pred HhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHHHHHHHhCCcCCEEECCCCcCCCccHHH
Confidence 456678899999988875 234556677889999999998876 1 4566778899999988865543
Q ss_pred ----ChhhcCCCCCCEEEccC
Q 003193 318 ----PREIGQLTCLKLLDLSN 334 (840)
Q Consensus 318 ----p~~i~~L~~L~~L~L~~ 334 (840)
...+..-++|+.|+++.
T Consensus 120 ~~~l~~~L~~n~sL~~l~l~~ 140 (167)
T d1pgva_ 120 EMDMMMAIEENESLLRVGISF 140 (167)
T ss_dssp HHHHHHHHHHCSSCCEEECCC
T ss_pred HHHHHHHHHhCCCccEeeCcC
Confidence 33445567777777765
|
| >d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Tropomodulin C-terminal domain species: Chicken (Gallus gallus) [TaxId: 9031]
Probab=96.29 E-value=0.0013 Score=58.41 Aligned_cols=80 Identities=15% Similarity=0.185 Sum_probs=41.6
Q ss_pred cCCCCCcEEEcCCC-CCC-----CCChhhcCCCCCCEEEccCCccCC--c----ccccCCCCCCEEeecCCCCc-----c
Q 003193 254 EGMTELRVLDLTGF-RFH-----SLPSSLGCLINLRTLSLENCLVVD--V----AIIGDLKKLEILSLKHSSIE-----Q 316 (840)
Q Consensus 254 ~~l~~Lr~L~l~~~-~~~-----~lp~~l~~l~~L~~L~L~~~~~~~--~----~~i~~L~~L~~L~l~~~~l~-----~ 316 (840)
.+.+.|+.|+++++ .++ .+-..+...++|+.|++++|.+.. . ..+...+.++.+++++|.+. .
T Consensus 14 ~~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~~ 93 (166)
T d1io0a_ 14 NNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILA 93 (166)
T ss_dssp TTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHH
T ss_pred hcCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHHH
Confidence 34556666666652 333 123344455666666666665544 1 23344556666666665543 2
Q ss_pred cChhhcCCCCCCEEEcc
Q 003193 317 LPREIGQLTCLKLLDLS 333 (840)
Q Consensus 317 lp~~i~~L~~L~~L~L~ 333 (840)
+-..+...++|+.++|.
T Consensus 94 l~~~l~~~~~L~~l~L~ 110 (166)
T d1io0a_ 94 LVEALQSNTSLIELRID 110 (166)
T ss_dssp HHHGGGGCSSCCEEECC
T ss_pred HHHHHHhCccccEEeec
Confidence 33444555566655554
|
| >d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Tropomodulin C-terminal domain species: Chicken (Gallus gallus) [TaxId: 9031]
Probab=95.87 E-value=0.0017 Score=57.66 Aligned_cols=82 Identities=16% Similarity=0.216 Sum_probs=60.4
Q ss_pred hcCCCCCcEEEcCCCCCCC-----CChhhcCCCCCCEEEccCCccCC------cccccCCCCCCEEeec--CCCCc----
Q 003193 253 FEGMTELRVLDLTGFRFHS-----LPSSLGCLINLRTLSLENCLVVD------VAIIGDLKKLEILSLK--HSSIE---- 315 (840)
Q Consensus 253 ~~~l~~Lr~L~l~~~~~~~-----lp~~l~~l~~L~~L~L~~~~~~~------~~~i~~L~~L~~L~l~--~~~l~---- 315 (840)
+...++|+.|++++|.++. +-..+...+.++.+++++|.+.. ...+...++|+.++|. +|.+.
T Consensus 42 l~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~~l~~~l~~~~~L~~l~L~l~~n~i~~~~~ 121 (166)
T d1io0a_ 42 LKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVE 121 (166)
T ss_dssp HTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHH
T ss_pred HhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHHHHHHHHHhCccccEEeeccCCCcCcHHHH
Confidence 3577889999999988762 44556778899999999988766 2567778889876664 44554
Q ss_pred -ccChhhcCCCCCCEEEccC
Q 003193 316 -QLPREIGQLTCLKLLDLSN 334 (840)
Q Consensus 316 -~lp~~i~~L~~L~~L~L~~ 334 (840)
.+...+.+.++|++|++..
T Consensus 122 ~~La~~L~~n~~L~~L~l~~ 141 (166)
T d1io0a_ 122 MEIANMLEKNTTLLKFGYHF 141 (166)
T ss_dssp HHHHHHHHHCSSCCEEECCC
T ss_pred HHHHHHHHhCCCcCEEeCcC
Confidence 3555667788888888866
|