Citrus Sinensis ID: 003201

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840
MAPPAQAHRSPSPSQPSGKGEVSDLKSQLRQLAGSRAPGIDDSKRELFKKVISYMTIGIDVSAVFGEMVMCSATSDIVLKKMCYLYVGNYAKVNPDLALLTINFLQRDCKDEDPMIRGLALRSLCSLRVANLVEYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAPTCIDADFPPTLKHLMLNDPDPQVVANCLSALQEIWSLEASTSEEASREREALISKPVIYYLLNRIKEFSEWAQCLVLELVAKYVPLDSNEIFDIMNLLEDRLQHANGAVVLSTIKVFLHLTLSMTDVHQQVYERIKAPLLTLVSSGSPEQSYAVLSHLHILVMRAPFIFASDYKHFYCQYNEPSYVKKLKLEMLTAVANESNTYEIVTELCEYAANVDIPIARESIRAVGKIALQQYDVNAIVDRLLQFLEMEKDYVTAEALVLVKDLLRKYPQWSHDCIAVVGSISSQNVQEPKAKAALIWMLGEYSQDMQDAPYILESLTENWEEEPSAEVRLHLLTAVMKCFFKRPPETQKVLGAALAAGLADFHQDVHDRALFYHRLLQYNVSVAERVVNPPKQAVSVFADTQSSEIKDRIFDEFNSLSVVYQKPSYMFTDKDYRGPFEFSDELGNLSIAAESADNVVPAQGVEANDKDLLLSTSEKEEIRGATFNVSGYSAPLYDSSAASVQSELAIISSTSAGSAPSSSLAIDDLLGLGLSAAPAPEPASVPPSLKLNSKAILDPGTFQQKWRQLPISLSQEFSLSPEGVAALTTPQALLWHMQGHSIHCIASGGHSPNFKFFFFAQKAEESSNFLVECIINTSSAKAQVKIKADDQSTSQAFSDVFQSALSKFSV
ccccccccccccccccccccHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHcccccHHHHHHHHHHcccccHHHHHHHHHHHHHHccccccHHHHHHHHHHHHcccccHHHHHHHHHHHcccccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHccccHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHccHHHHHHHHHHHHHccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHccccccccccEEEEcccccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHcccccHHHHHHHHHcccccccHHHHHHHHHHHHHccccccccHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHccccHHHHHHHccccccccccccccccHHHHHHHHHHccccHHHccccccccccccccccccccccccccHHHHcccccccccccccccccccccccccHHHcccccccccccccccccccccccHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHccccccccccccccccccccccHHHHHHHHHHccEEEEEccccccccEEEEEEcccccccEEEEEEEEEcccccEEEEEEccccccHHHHHHHHHHHHHHccc
ccccHHHccccccccccccccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHcccHHHHHHccHHHHHHHHHHcccccHHHHHHHHHHHHHHHccccccccccccHcHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHccHHHHHHccccHHHHHHHHHHHHHHHHHcHHHHHHHcEEEEEEcccccEEEHHHHHHHHHHHcHHcHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHcccHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHcccHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHHcccHHHHHcccccccHHcHHHHHHHcccHHHHHccccccccccccHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHcccccccccccccccccccccccccccccHHHHHHHHHccccEEcEccccccHHHHHcccHHHHHHHHHHccEEEEEccccccccEEEEEEEEcccccEEEEEEEEEccccEEEEEEEccccHHHHHHHHHHHHHHHHccc
mappaqahrspspsqpsgkgevsDLKSQLRQLagsrapgiddsKRELFKKVISYMTIGIDVSAVFGEMVMCSATSDIVLKKMCYLYVGNyakvnpdlALLTINFLQrdckdedpmiRGLALRSLCSLRVANLVEYLVgplglglkdnnsyVRTVAVIGVLKLYhisaptcidadfpptlkhlmlndpdpQVVANCLSALQEIWSLEASTSEEASREREALISKPVIYYLLNRIKEFSEWAQCLVLELVAkyvpldsneiFDIMNLLEDRLQHANGAVVLSTIKVFLHLTLSMTDVHQQVYERIKAPLltlvssgspeqsYAVLSHLHILVMrapfifasdykhfycqynepsyvkKLKLEMLTAVANESNTYEIVTELCEYAanvdipiaRESIRAVGKIALQQYDVNAIVDRLLQFLEMEKDYVTAEALVLVKDLLRkypqwshdciavvgsissqnvqePKAKAALIWMLGEysqdmqdaPYILESLtenweeepsAEVRLHLLTAVMKCFFKRPPETQKVLGAALAAGLADFHQDVHDRALFYHRLLQYNVSVaervvnppkqaVSVFADTQSSEIKDRIFDEFNSlsvvyqkpsymftdkdyrgpfefsdelgnlsiaaesadnvvpaqgveandkdlllstsekeeirgatfnvsgysaplydssaaSVQSELAIISstsagsapssslaIDDLLglglsaapapepasvppslklnskaildpgtfqqkwrqlpislsqefslspegvaalTTPQALLWHmqghsihciasgghspnfkFFFFAQKAEESSNFLVECIINTSSAKAQVKikaddqstsQAFSDVFQSALSKFSV
mappaqahrspspsqpsgkgEVSDLKSQLRQLagsrapgiddskreLFKKVISYMTIGIDVSAVFGEMVMCSATSDIVLKKMCYLYVGNYAKVNPDLALLTINFLQRDCKDEDPMIRGLALRSLCSLRVANLVEYLVGPlglglkdnnsYVRTVAVIGVLKLYHISAPTCIDADFPPTLKHLMLNDPDPQVVANCLSALQEIWSLEASTSEEASREREALISKPVIYYLLNRIKEFSEWAQCLVLELVAKYVPLDSNEIFDIMNLLEDRLQHANGAVVLSTIKVFLHLTLSMTDVHQQVYERIKAPLLTLVSSGSPEQSYAVLSHLHILVMRAPFIFASDYKHFYCQYNEPSYVKKLKLEMLTAVANESNTYEIVTELCEYAANVDIPIARESIRAVGKIALQQYDVNAIVDRLLQFLEMEKDYVTAEALVLVKDLLRKYPQWSHDCIAVVgsissqnvqePKAKAALIWMLGEYSQDMQDAPYILESLTENWEEEPSAEVRLHLLTAVMKCFFKRPPETQKVLGAALAAGLADFHQDVHDRALFYHRLLQYNVSVAERVVNPPKQAVSVFADTQSSEIKDRIFDEFNSLSVVYQKPSYMFTDKDYRGPFEFSDELGNLSIAAESADNVVPAQGVEANDKDLLLSTSEKEEIRGATFNVSGYSAPLYDSSAASVQSELAIISSTSAGSAPSSSLAIDDLLGLGLSAAPAPEPASVPPSLKLNSKAILDPGTFQQKWRQLPISLSQEFSLSPEGVAALTTPQALLWHMQGHSIHCIASGGHSPNFKFFFFAQKAEESSNFLVECIINTSSAKAQVKIKADDQSTSQAFSDVFQSALSKFSV
MAPPAQAHRSPSPSQPSGKGEVSDLKSQLRQLAGSRAPGIDDSKRELFKKVISYMTIGIDVSAVFGEMVMCSATSDIVLKKMCYLYVGNYAKVNPDLALLTINFLQRDCKDEDPMIRGLALRSLCSLRVANLVEYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAPTCIDADFPPTLKHLMLNDPDPQVVANCLSALQEIWsleastseeasrerealisKPVIYYLLNRIKEFSEWAQCLVLELVAKYVPLDSNEIFDIMNLLEDRLQHANGAVVLSTIKVFLHLTLSMTDVHQQVYERIKAPLLTLVSSGSPEQSYAVLSHLHILVMRAPFIFASDYKHFYCQYNEPSYVKKLKLEMLTAVANESNTYEIVTELCEYAANVDIPIARESIRAVGKIALQQYDVNAIVDRLLQFLEMEKDYVTAEALVLVKDLLRKYPQWSHDCIAVVGSISSQNVQEPKAKAALIWMLGEYSQDMQDAPYILESLTENWEEEPSAEVRLHLLTAVMKCFFKRPPETQKVlgaalaaglaDFHQDVHDRALFYHRLLQYNVSVAERVVNPPKQAVSVFADTQSSEIKDRIFDEFNSLSVVYQKPSYMFTDKDYRGPFEFSDELGNLSIAAESADNVVPAQGVEANDKDLLLSTSEKEEIRGATFNVSGYSAPLYDSSAASVQSELaiisstsagsapssslaiddllglglsaapapepasvppslKLNSKAILDPGTFQQKWRQLPISLSQEFSLSPEGVAALTTPQALLWHMQGHSIHCIASGGHSPNfkffffaqkaeessNFLVECIINTSSAKAQVKIKADDQSTSQAFSDVFQSALSKFSV
*********************************************ELFKKVISYMTIGIDVSAVFGEMVMCSATSDIVLKKMCYLYVGNYAKVNPDLALLTINFLQRDCKDEDPMIRGLALRSLCSLRVANLVEYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAPTCIDADFPPTLKHLMLNDPDPQVVANCLSALQEIWSL*************ALISKPVIYYLLNRIKEFSEWAQCLVLELVAKYVPLDSNEIFDIMNLLEDRLQHANGAVVLSTIKVFLHLTLSMTDVHQQVYERIKAPLLTLVSSGSPEQSYAVLSHLHILVMRAPFIFASDYKHFYCQYNEPSYVKKLKLEMLTAVANESNTYEIVTELCEYAANVDIPIARESIRAVGKIALQQYDVNAIVDRLLQFLEMEKDYVTAEALVLVKDLLRKYPQWSHDCIAVVGSISSQNVQEPKAKAALIWMLGEYSQDMQDAPYILESLTENWEEEPSAEVRLHLLTAVMKCFFKRPPETQKVLGAALAAGLADFHQDVHDRALFYHRLLQYNVSVAERVVNPPKQAVSVFADTQSSEIKDRIFDEFNSLSVVYQKPSYMFTDKDYRGPFEFSDELGNLSIA**********************************FNV**Y****************************************************************L*PGTFQQKWRQLPISLSQEFSLSPEGVAALTTPQALLWHMQGHSIHCIASGGHSPNFKFFFFAQKAEESSNFLVECIINT*********************************
********************************************RELFKKVISYMTIGIDVSAVFGEMVMCSATSDIVLKKMCYLYVGNYAKVNPDLALLTINFLQRDCKDEDPMIRGLALRSLCSLRVANLVEYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAPTCIDADFPPTLKHLMLNDPDPQVVANCLSALQEIWSLEASTSEEASREREALISKPVIYYLLNRIKEFSEWAQCLVLELVAKYVPLDSNEIFDIMNLLEDRLQHANGAVVLSTIKVFLHLTLSMTDVHQQVYERIKAPLLTLVSSGSPEQSYAVLSHLHILVMRAPFIFASDYKHFYCQYNEPSYVKKLKLEMLTAVANESNTYEIVTELCEYAANVDIPIARESIRAVGKIALQQYDVNAIVDRLLQFLEMEKDYVTAEALVLVKDLLRKYPQWSHDCIAVVGSISSQNVQEPKAKAALIWMLGEYSQDMQDAPYILESLTENWEEEPSAEVRLHLLTAVMKCFFKRPPETQKVLGAALAAGLADFHQDVHDRALFYHRLLQYNVSVAERVVNP****************KDRIFDEFNSLSVVYQKPSY****************************************************************************************************************************************WR*************************LLWHMQGHSIHCIASGGHSPNFKFFFFAQKAEESSNFLVECIINTSSAKAQVKIKADDQSTSQAFSDVFQSALSKFSV
*************************************PGIDDSKRELFKKVISYMTIGIDVSAVFGEMVMCSATSDIVLKKMCYLYVGNYAKVNPDLALLTINFLQRDCKDEDPMIRGLALRSLCSLRVANLVEYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAPTCIDADFPPTLKHLMLNDPDPQVVANCLSALQEIWSLE***********EALISKPVIYYLLNRIKEFSEWAQCLVLELVAKYVPLDSNEIFDIMNLLEDRLQHANGAVVLSTIKVFLHLTLSMTDVHQQVYERIKAPLLTLVSSGSPEQSYAVLSHLHILVMRAPFIFASDYKHFYCQYNEPSYVKKLKLEMLTAVANESNTYEIVTELCEYAANVDIPIARESIRAVGKIALQQYDVNAIVDRLLQFLEMEKDYVTAEALVLVKDLLRKYPQWSHDCIAVVGSISSQNVQEPKAKAALIWMLGEYSQDMQDAPYILESLTENWEEEPSAEVRLHLLTAVMKCFFKRPPETQKVLGAALAAGLADFHQDVHDRALFYHRLLQYNVSVAERVVNPPKQAVSVFADTQSSEIKDRIFDEFNSLSVVYQKPSYMFTDKDYRGPFEFSDELGNLSIAAESADNVVPAQGVEANDKDLLLSTSEKEEIRGATFNVSGYSAPLYDSSAASVQSELAII***********SLAIDDLLGLGLSAAPAPEPASVPPSLKLNSKAILDPGTFQQKWRQLPISLSQEFSLSPEGVAALTTPQALLWHMQGHSIHCIASGGHSPNFKFFFFAQKAEESSNFLVECIINTSSA***************AFSDVFQSALSKFSV
********************EVSDLKSQLRQLAGSRAPGIDDSKRELFKKVISYMTIGIDVSAVFGEMVMCSATSDIVLKKMCYLYVGNYAKVNPDLALLTINFLQRDCKDEDPMIRGLALRSLCSLRVANLVEYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAPTCIDADFPPTLKHLMLNDPDPQVVANCLSALQEIWSLEASTS**ASREREALISKPVIYYLLNRIKEFSEWAQCLVLELVAKYVPLDSNEIFDIMNLLEDRLQHANGAVVLSTIKVFLHLTLSMTDVHQQVYERIKAPLLTLVSSGSPEQSYAVLSHLHILVMRAPFIFASDYKHFYCQYNEPSYVKKLKLEMLTAVANESNTYEIVTELCEYAANVDIPIARESIRAVGKIALQQYDVNAIVDRLLQFLEMEKDYVTAEALVLVKDLLRKYPQWSHDCIAVVGSISSQNVQEPKAKAALIWMLGEYSQDMQDAPYILESLTENWEEEPSAEVRLHLLTAVMKCFFKRPPETQKVLGAALAAGLADFHQDVHDRALFYHRLLQYNVSVAERVVNPPKQAVSVFADTQSSEIKDRIFDEFNSLSVVYQKPSYMFTDKDYR*****************************************K********************************************LAIDDLLGLGLSAAPAPEPASVPPSLKLNSKAILDPGTFQQKWRQLPISLSQEFSLSPEGVAALTTPQALLWHMQGHSIHCIASGGHSPNFKFFFFAQKAEESSNFLVECIINTSSAKAQVKIKADDQSTSQAFSDVFQSALSKFSV
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
MAPPAQAHRSPSPSQPSGKGEVSDLKSQLRQLAGSRAPGIDDSKRELFKKVISYMTIGIDVSAVFGEMVMCSATSDIVLKKMCYLYVGNYAKVNPDLALLTINFLQRDCKDEDPMIRGLALRSLCSLRVANLVEYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAPTCIDADFPPTLKHLMLNDPDPQVVANCLSALQEIWSLEASTSEEASREREALISKPVIYYLLNRIKEFSEWAQCLVLELVAKYVPLDSNEIFDIMNLLEDRLQHANGAVVLSTIKVFLHLTLSMTDVHQQVYERIKAPLLTLVSSGSPEQSYAVLSHLHILVMRAPFIFASDYKHFYCQYNEPSYVKKLKLEMLTAVANESNTYEIVTELCEYAANVDIPIARESIRAVGKIALQQYDVNAIVDRLLQFLEMEKDYVTAEALVLVKDLLRKYPQWSHDCIAVVGSISSQNVQEPKAKAALIWMLGEYSQDMQDAPYILESLTENWEEEPSAEVRLHLLTAVMKCFFKRPPETQKVLGAALAAGLADFHQDVHDRALFYHRLLQYNVSVAERVVNPPKQAVSVFADTQSSEIKDRIFDEFNSLSVVYQKPSYMFTDKDYRGPFEFSDELGNLSIAAESADNVVPAQGVEANDKDLLLSTSEKEEIRGATFNVSGYSAPLYDSSAASVQSELAIISSTSAGSAPSSSLAIDDLLGLGLSAAPAPEPASVPPSLKLNSKAILDPGTFQQKWRQLPISLSQEFSLSPEGVAALTTPQALLWHMQGHSIHCIASGGHSPNFKFFFFAQKAEESSNFLVECIINTSSAKAQVKIKADDQSTSQAFSDVFQSALSKFSV
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query840 2.2.26 [Sep-21-2011]
Q9LDK9841 Beta-adaptin-like protein yes no 0.996 0.995 0.813 0.0
Q54R84838 AP-4 complex subunit beta yes no 0.665 0.667 0.363 1e-110
Q9WV76738 AP-4 complex subunit beta yes no 0.647 0.737 0.375 1e-100
Q08DS7 951 AP-1 complex subunit beta yes no 0.677 0.598 0.359 1e-100
P63009 937 AP-2 complex subunit beta yes no 0.675 0.605 0.361 1e-100
P62944 937 AP-2 complex subunit beta no no 0.675 0.605 0.361 1e-99
P63010 937 AP-2 complex subunit beta yes no 0.675 0.605 0.361 1e-99
Q9DBG3 937 AP-2 complex subunit beta no no 0.675 0.605 0.361 1e-99
O81742893 Beta-adaptin-like protein no no 0.677 0.637 0.367 5e-98
Q54X82 942 AP-1 complex subunit beta no no 0.666 0.594 0.357 9e-98
>sp|Q9LDK9|APBLA_ARATH Beta-adaptin-like protein A OS=Arabidopsis thaliana GN=BETAA-AD PE=1 SV=1 Back     alignment and function desciption
 Score = 1414 bits (3659), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 686/843 (81%), Positives = 756/843 (89%), Gaps = 6/843 (0%)

Query: 1   MAPPAQAHRSPSPSQPSGKGEVSDLKSQLRQLAGSRAPGIDDSKRELFKKVISYMTIGID 60
           MAPPA + R PSPSQPSGK EVSDLK+QLRQLAGSRAPG+DDSKR+L+KKVISYMTIGID
Sbjct: 1   MAPPAASQRYPSPSQPSGKSEVSDLKTQLRQLAGSRAPGVDDSKRDLYKKVISYMTIGID 60

Query: 61  VSAVFGEMVMCSATSDIVLKKMCYLYVGNYAKVNPDLALLTINFLQRDCKDEDPMIRGLA 120
           VS+VFGEMVMCSATSDIVLKKMCYLYVGNYAK NPDL+LLTINFLQRDCKDEDPMIRGLA
Sbjct: 61  VSSVFGEMVMCSATSDIVLKKMCYLYVGNYAKGNPDLSLLTINFLQRDCKDEDPMIRGLA 120

Query: 121 LRSLCSLRVANLVEYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAPTCIDADFPPTLK 180
           LRSLCSLRV NLVEYLVGPLG GLKDNNSYVRT+AV GVLKLYHIS  TCIDADFP TLK
Sbjct: 121 LRSLCSLRVPNLVEYLVGPLGSGLKDNNSYVRTIAVTGVLKLYHISPSTCIDADFPATLK 180

Query: 181 HLMLNDPDPQVVANCLSALQEIWSLEASTSEEASREREALISKPVIYYLLNRIKEFSEWA 240
            LML+D D QVVANCLSALQEIWSLEAS SEEA RE+E+L+SKPVIYY LNRIKEF+EWA
Sbjct: 181 SLMLHDSDAQVVANCLSALQEIWSLEASHSEEACREKESLLSKPVIYYFLNRIKEFNEWA 240

Query: 241 QCLVLELVAKYVPLDSNEIFDIMNLLEDRLQHANGAVVLSTIKVFLHLTLSMTDVHQQVY 300
           QCL+LEL  KYVP DSN+IFDIMNLLEDRLQHANGAVVL+T+KVFL LTLSMTDVHQQVY
Sbjct: 241 QCLILELAVKYVPSDSNDIFDIMNLLEDRLQHANGAVVLATVKVFLQLTLSMTDVHQQVY 300

Query: 301 ERIKAPLLTLVSSGSPEQSYAVLSHLHILVMRAPFIFASDYKHFYCQYNEPSYVKKLKLE 360
           ERIK+PLLTLVSSGSPEQSYA+LSHLH+LV+RAPFIFA+DYKHFYCQYNEPSYVKKLKLE
Sbjct: 301 ERIKSPLLTLVSSGSPEQSYAILSHLHLLVVRAPFIFAADYKHFYCQYNEPSYVKKLKLE 360

Query: 361 MLTAVANESNTYEIVTELCEYAANVDIPIARESIRAVGKIALQQYDVNAIVDRLLQFLEM 420
           MLTAVANESNTYEIVTELCEYAANVDI IARESIRAVGKIALQQYDVNAIVDRLLQFLEM
Sbjct: 361 MLTAVANESNTYEIVTELCEYAANVDIAIARESIRAVGKIALQQYDVNAIVDRLLQFLEM 420

Query: 421 EKDYVTAEALVLVKDLLRKYPQWSHDCIAVVGSISSQNVQEPKAKAALIWMLGEYSQDMQ 480
           EKDYVTAE LVLVKDLLRKYPQWSHDCI+VVG ISS+N+QEPKAKAALIWMLGEY+QDM 
Sbjct: 421 EKDYVTAETLVLVKDLLRKYPQWSHDCISVVGGISSKNIQEPKAKAALIWMLGEYAQDMS 480

Query: 481 DAPYILESLTENWEEEPSAEVRLHLLTAVMKCFFKRPPETQKVLGAALAAGLADFHQDVH 540
           DAPY+LE+L ENWEEE SAEVRLHLLTA MKCFFKR PETQK LG ALAAG+ADFHQDVH
Sbjct: 481 DAPYVLENLIENWEEEHSAEVRLHLLTAAMKCFFKRAPETQKALGTALAAGIADFHQDVH 540

Query: 541 DRALFYHRLLQYNVSVAERVVNPPKQAVSVFADTQSSEIKDRIFDEFNSLSVVYQKPSYM 600
           DRALFY+R+LQY+V VAERVV+PPKQAVSVFADTQSSEIKDR+FDEFNSLSV+YQKPSYM
Sbjct: 541 DRALFYYRVLQYDVHVAERVVSPPKQAVSVFADTQSSEIKDRVFDEFNSLSVIYQKPSYM 600

Query: 601 FTDKDYRGPFEFSDELGNLSIAAESADNVVPAQGVEANDKDLLLSTSEKEEIRG-ATFNV 659
           FTDK++RGPFEFSDE+GN+SI  E++ ++VPAQ  EANDKDLLL   EK+E +G +  N 
Sbjct: 601 FTDKEHRGPFEFSDEVGNISITPEASSDIVPAQQYEANDKDLLLGIDEKDENKGVSNNNG 660

Query: 660 SGYSAPLYDSSA--ASVQSELAIISSTSAGSAPSSSLAIDDLLGLGLSAAPAPEPASVPP 717
           S Y+AP  +SS+   S   ELAI    ++ + P  S   DDL GLGLS APAP P+    
Sbjct: 661 SAYTAPSLESSSNITSQMQELAISGPATSATTP-QSFGFDDLFGLGLSTAPAPTPSPP-- 717

Query: 718 SLKLNSKAILDPGTFQQKWRQLPISLSQEFSLSPEGVAALTTPQALLWHMQGHSIHCIAS 777
            LKLN++A LDPG FQQKWRQLPISL+QE S++P+G+AALT PQ+L+ HMQ HSIHCIAS
Sbjct: 718 LLKLNARAALDPGAFQQKWRQLPISLTQECSVNPQGIAALTVPQSLIKHMQSHSIHCIAS 777

Query: 778 GGHSPNFKFFFFAQKAEESSNFLVECIINTSSAKAQVKIKADDQSTSQAFSDVFQSALSK 837
           GG SPNFKFFFFAQK  E SN+L ECIINTSSAKAQ+K+KAD+QST QAF+ VF++ALSK
Sbjct: 778 GGQSPNFKFFFFAQKESEPSNYLTECIINTSSAKAQIKVKADEQSTCQAFTTVFETALSK 837

Query: 838 FSV 840
           F +
Sbjct: 838 FGM 840
Subunit of clathrin-associated adaptor protein complex that plays a role in protein sorting in the late-Golgi/trans-Golgi network (TGN) and/or endosomes. The AP complexes mediate both the recruitment of clathrin to membranes and the recognition of sorting signals within the cytosolic tails of transmembrane cargo molecules.
Arabidopsis thaliana (taxid: 3702)
>sp|Q54R84|AP4B_DICDI AP-4 complex subunit beta OS=Dictyostelium discoideum GN=ap4b1 PE=3 SV=1 Back     alignment and function description
>sp|Q9WV76|AP4B1_MOUSE AP-4 complex subunit beta-1 OS=Mus musculus GN=Ap4b1 PE=2 SV=2 Back     alignment and function description
>sp|Q08DS7|AP1B1_BOVIN AP-1 complex subunit beta-1 OS=Bos taurus GN=AP2B1 PE=2 SV=1 Back     alignment and function description
>sp|P63009|AP2B1_BOVIN AP-2 complex subunit beta OS=Bos taurus GN=AP2B1 PE=1 SV=2 Back     alignment and function description
>sp|P62944|AP2B1_RAT AP-2 complex subunit beta OS=Rattus norvegicus GN=Ap2b1 PE=1 SV=1 Back     alignment and function description
>sp|P63010|AP2B1_HUMAN AP-2 complex subunit beta OS=Homo sapiens GN=AP2B1 PE=1 SV=1 Back     alignment and function description
>sp|Q9DBG3|AP2B1_MOUSE AP-2 complex subunit beta OS=Mus musculus GN=Ap2b1 PE=1 SV=1 Back     alignment and function description
>sp|O81742|APBLC_ARATH Beta-adaptin-like protein C OS=Arabidopsis thaliana GN=BETAC-AD PE=1 SV=2 Back     alignment and function description
>sp|Q54X82|AP1B_DICDI AP-1 complex subunit beta OS=Dictyostelium discoideum GN=ap1b1 PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query840
224092344842 predicted protein [Populus trichocarpa] 0.996 0.994 0.864 0.0
449517253848 PREDICTED: LOW QUALITY PROTEIN: beta-ada 1.0 0.990 0.845 0.0
449437034848 PREDICTED: beta-adaptin-like protein A-l 1.0 0.990 0.838 0.0
225430033844 PREDICTED: beta-adaptin-like protein A [ 0.997 0.992 0.861 0.0
297807185842 adaptin family protein [Arabidopsis lyra 0.997 0.995 0.818 0.0
356507875845 PREDICTED: beta-adaptin-like protein A-l 0.995 0.989 0.858 0.0
255551058848 AP-2 complex subunit beta-1, putative [R 1.0 0.990 0.855 0.0
356518312845 PREDICTED: beta-adaptin-like protein A-l 0.995 0.989 0.845 0.0
365222858840 Hop-interacting protein THI006 [Solanum 0.995 0.995 0.827 0.0
334187619850 beta-adaptin-like protein A [Arabidopsis 0.994 0.982 0.815 0.0
>gi|224092344|ref|XP_002309568.1| predicted protein [Populus trichocarpa] gi|222855544|gb|EEE93091.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score = 1482 bits (3837), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 730/844 (86%), Positives = 772/844 (91%), Gaps = 7/844 (0%)

Query: 1   MAPPAQAHRSPSPSQPSGKGEVSDLKSQLRQLAGSRAPGIDDSKRELFKKVISYMTIGID 60
           MAPPAQ +RSPSPSQPSGK EV+DLKSQLRQLAGSR PG+DDSKRELFKKVISYMTIGID
Sbjct: 1   MAPPAQTNRSPSPSQPSGKSEVTDLKSQLRQLAGSRLPGVDDSKRELFKKVISYMTIGID 60

Query: 61  VSAVFGEMVMCSATSDIVLKKMCYLYVGNYAKVNPDLALLTINFLQRDCKDEDPMIRGLA 120
           VS+VFGEMVMCSATSDIVLKKMCYLYVGNYAKVNPDLALLTINFLQRDCKDEDPMIRGLA
Sbjct: 61  VSSVFGEMVMCSATSDIVLKKMCYLYVGNYAKVNPDLALLTINFLQRDCKDEDPMIRGLA 120

Query: 121 LRSLCSLRVANLVEYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAPTCIDADFPPTLK 180
           LRSL SL VANLVEYLVGPL  GLKDNNSYVR VAVIGVLKLYHIS  TCIDADFP  LK
Sbjct: 121 LRSLGSLNVANLVEYLVGPLNAGLKDNNSYVRIVAVIGVLKLYHISVTTCIDADFPAVLK 180

Query: 181 HLMLNDPDPQVVANCLSALQEIWSLEASTSEEASREREALISKPVIYYLLNRIKEFSEWA 240
           HL+LND D QVVANCL ALQEIW+ EASTSEEA +EREAL+SKPVIYY LNRIKEFSEWA
Sbjct: 181 HLLLNDQDAQVVANCLLALQEIWNGEASTSEEALKEREALLSKPVIYYFLNRIKEFSEWA 240

Query: 241 QCLVLELVAKYVPLDSNEIFDIMNLLEDRLQHANGAVVLSTIKVFLHLTLSMTDVHQQVY 300
           QCLVL+L  KYVP DSNEIFDIMNLLEDRLQHANGAVVL+T KVFLH+TLSMTDVHQQVY
Sbjct: 241 QCLVLDLAVKYVPADSNEIFDIMNLLEDRLQHANGAVVLATAKVFLHMTLSMTDVHQQVY 300

Query: 301 ERIKAPLLTLVSSGSPEQSYAVLSHLHILVMRAPFIFASDYKHFYCQYNEPSYVKKLKLE 360
           ERIKAPLLTLVSSGSPEQSYAVLSHLH+LVMRAP++F+SDYKHFYCQYNEPSYVKKLKLE
Sbjct: 301 ERIKAPLLTLVSSGSPEQSYAVLSHLHLLVMRAPYVFSSDYKHFYCQYNEPSYVKKLKLE 360

Query: 361 MLTAVANESNTYEIVTELCEYAANVDIPIARESIRAVGKIALQQYDVNAIVDRLLQFLEM 420
           MLTAVANES+TYEIVTELCEYAANVDIPIARESIRAVGKIALQQYDVNAIVDRLLQFLEM
Sbjct: 361 MLTAVANESSTYEIVTELCEYAANVDIPIARESIRAVGKIALQQYDVNAIVDRLLQFLEM 420

Query: 421 EKDYVTAEALVLVKDLLRKYPQWSHDCIAVVGSISSQNVQEPKAKAALIWMLGEYSQDMQ 480
           EKDYVTAEALVLVKDLLRKYPQWSHDCIAVVG+ISSQNVQEPKAKAALIWMLGEYSQDM 
Sbjct: 421 EKDYVTAEALVLVKDLLRKYPQWSHDCIAVVGNISSQNVQEPKAKAALIWMLGEYSQDMS 480

Query: 481 DAPYILESLTENWEEEPSAEVRLHLLTAVMKCFFKRPPETQKVLGAALAAGLADFHQDVH 540
           DAPYILE+LTENW+EE SAEVRLHLLTAVMKCFFKRPPETQK LGAALA+GLADFHQDVH
Sbjct: 481 DAPYILENLTENWDEEHSAEVRLHLLTAVMKCFFKRPPETQKALGAALASGLADFHQDVH 540

Query: 541 DRALFYHRLLQYNVSVAERVVNPPKQAVSVFADTQSSEIKDRIFDEFNSLSVVYQKPSYM 600
           DRALFY+RLLQ+NV+VAERVVNPPKQAVSVFADTQSSE+KDRIFDEFNSLSVVYQKPSYM
Sbjct: 541 DRALFYYRLLQHNVTVAERVVNPPKQAVSVFADTQSSEVKDRIFDEFNSLSVVYQKPSYM 600

Query: 601 FTDKDYRGPFEFSDELGNLSIAAESADNVVPAQGVEANDKDLLLSTSEKEEIRGATFNVS 660
           FTDK++RGPFEFSDELGNL+I  ES    VP   VEANDKDLLL TSEKEE RG+  N S
Sbjct: 601 FTDKEHRGPFEFSDELGNLAIRTESD---VPVHVVEANDKDLLLGTSEKEESRGSGTNGS 657

Query: 661 GYSAPLYD----SSAASVQSELAIISSTSAGSAPSSSLAIDDLLGLGLSAAPAPEPASVP 716
            Y+APLYD    S+A  VQ EL I +  +AG +P SSLAIDDLLGLGL AAPAP PA  P
Sbjct: 658 AYTAPLYDTSLLSTATQVQPELPISNPAAAGLSPQSSLAIDDLLGLGLPAAPAPTPAPSP 717

Query: 717 PSLKLNSKAILDPGTFQQKWRQLPISLSQEFSLSPEGVAALTTPQALLWHMQGHSIHCIA 776
           PSLKLN+ A+LDPGTFQQKWRQLPI LS+E S+SP+G AALTTPQALLWHMQGHSI CIA
Sbjct: 718 PSLKLNAGAVLDPGTFQQKWRQLPICLSEELSVSPQGAAALTTPQALLWHMQGHSIQCIA 777

Query: 777 SGGHSPNFKFFFFAQKAEESSNFLVECIINTSSAKAQVKIKADDQSTSQAFSDVFQSALS 836
           SGG SPN KFFFFAQKAEESS FL+EC INTSSAK Q+ IKADDQS SQAFS +FQSALS
Sbjct: 778 SGGQSPNLKFFFFAQKAEESSIFLIECKINTSSAKTQITIKADDQSMSQAFSTLFQSALS 837

Query: 837 KFSV 840
           +F  
Sbjct: 838 RFGT 841

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|449517253|ref|XP_004165660.1| PREDICTED: LOW QUALITY PROTEIN: beta-adaptin-like protein A-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449437034|ref|XP_004136297.1| PREDICTED: beta-adaptin-like protein A-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|225430033|ref|XP_002284239.1| PREDICTED: beta-adaptin-like protein A [Vitis vinifera] gi|296081892|emb|CBI20897.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|297807185|ref|XP_002871476.1| adaptin family protein [Arabidopsis lyrata subsp. lyrata] gi|297317313|gb|EFH47735.1| adaptin family protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|356507875|ref|XP_003522688.1| PREDICTED: beta-adaptin-like protein A-like [Glycine max] Back     alignment and taxonomy information
>gi|255551058|ref|XP_002516577.1| AP-2 complex subunit beta-1, putative [Ricinus communis] gi|223544397|gb|EEF45918.1| AP-2 complex subunit beta-1, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|356518312|ref|XP_003527823.1| PREDICTED: beta-adaptin-like protein A-like [Glycine max] Back     alignment and taxonomy information
>gi|365222858|gb|AEW69781.1| Hop-interacting protein THI006 [Solanum lycopersicum] Back     alignment and taxonomy information
>gi|334187619|ref|NP_001190290.1| beta-adaptin-like protein A [Arabidopsis thaliana] gi|332004303|gb|AED91686.1| beta-adaptin-like protein A [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query840
GENEDB_PFALCIPARUM|MAL7P1.164858 MAL7P1.164 "adapter-related pr 0.679 0.665 0.362 1.9e-106
UNIPROTKB|Q8IBF8858 MAL7P1.164 "Adapter-related pr 0.679 0.665 0.362 1.9e-106
FB|FBgn0010380921 AP-1-2beta "Adaptor Protein co 0.723 0.660 0.357 4.6e-101
DICTYBASE|DDB_G0283319838 ap4b1 "adaptor-related protein 0.433 0.434 0.410 4.6e-101
WB|WBGene00000160 955 apb-1 [Caenorhabditis elegans 0.671 0.590 0.349 1.1e-97
TAIR|locus:2117924893 AT4G23460 [Arabidopsis thalian 0.675 0.634 0.357 1.4e-97
MGI|MGI:1096368 943 Ap1b1 "adaptor protein complex 0.716 0.638 0.352 3.7e-96
ZFIN|ZDB-GENE-040426-1284729 ap4b1 "adaptor-related protein 0.623 0.718 0.375 4.2e-96
UNIPROTKB|Q10567 949 AP1B1 "AP-1 complex subunit be 0.701 0.620 0.356 9.7e-96
UNIPROTKB|F1NCI1 922 AP1B1 "Uncharacterized protein 0.708 0.645 0.354 1.6e-95
GENEDB_PFALCIPARUM|MAL7P1.164 MAL7P1.164 "adapter-related protein, putative" [Plasmodium falciparum (taxid:5833)] Back     alignment and assigned GO terms
 Score = 1033 (368.7 bits), Expect = 1.9e-106, Sum P(2) = 1.9e-106
 Identities = 217/599 (36%), Positives = 373/599 (62%)

Query:    12 SPSQPSGKGEVSDLKSQLRQLAGSRAPGIDDSKRELFKKVISYMTIGIDVSAVFGEMVMC 71
             SPSQ     E++ LK  L++L   +    DD KRE+ KKVI+YMT+G+DVS +F +++M 
Sbjct:     2 SPSQ----SEINKLKDVLKKLPQEKN---DDKKREVLKKVIAYMTLGVDVSKLFPDIIMI 54

Query:    72 SATSDIVLKKMCYLYVGNYAKVNPDLALLTINFLQRDCKDEDPMIRGLALRSLCSLRVAN 131
             S+T+DI+ KKM YLY+ NYA+ N +L+LLTIN LQ+D KD+DP+IRGLALR+ C+LR+ N
Sbjct:    55 SSTNDIIQKKMIYLYLNNYAETNSELSLLTINTLQKDSKDDDPIIRGLALRTFCNLRINN 114

Query:   132 LVEYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAPTCIDADFPPTLKHLMLNDPDPQV 191
             L EY+ GPL  GL D NSYVR +A+I  +KL  ++    I  D    LK+ +L D DPQ 
Sbjct:   115 LFEYIEGPLFNGLNDKNSYVRRIAIISCVKLIKMNPDLSIRNDIIKILKNKLL-DKDPQC 173

Query:   192 VANCLSALQEIWXXXXXXXXXXXXXXXXXXXKPVIYYLLNRIKEFSEWAQCLVLELVAKY 251
             + N + AL EI                    K +++ +LN++  F+EW + ++L +V+ Y
Sbjct:   174 IINSVHALNEI----------LIDEGGLKVNKEIVFNMLNKLSHFNEWGKSVILYIVSTY 223

Query:   252 VPLDSNEIFDIMNLLEDRLQHANGAVVLSTIKVFLHLTLSMTDVHQQVYERIKAPLLTLV 311
             +P + +E++DIMN+LE+ ++  +  V L+ +K FL+ +++ T++  Q+++R+K PLLTL+
Sbjct:   224 IPENEDEMYDIMNILENHIRDFSSTVFLACLKCFLNFSINDTNLQIQIFQRMKDPLLTLI 283

Query:   312 SSGSPEQSYAVLSHLHILVMRAPF----IFASDYKHFYCQYNEPSYVKKLKLEMLTAVAN 367
             S+ S E +Y VL H ++L+  A      IF  DYKHF+ +YN+ +Y+K +KL++L +VA+
Sbjct:   284 STSSNEIAYIVLLHTNLLLHEANKLNYKIFDYDYKHFFFRYNDLTYIKDIKLDILVSVAS 343

Query:   368 ESNTYEIVTELCEYAANVDIPIARESIRAVGKIALQ-QYDVNAIVD-RLLQFLEMEKDYV 425
             ++N   I+ EL EY ++ ++ IA+++I ++G IAL+    ++ +V+  L  F+ M   Y+
Sbjct:   344 KNNVVLIINELSEYISDANVEIAQKAIESIGSIALKIPKCISRVVELSLSNFMTMNYSYI 403

Query:   426 TAEALVLVKDLLRKYPQWSHDCIAVVGSISSQNVQEPKAKAALIWMLGEYSQDMQDAPYI 485
              +  + ++ ++LRKY +++   I  +    ++ +       + IW++GEY + +++APY+
Sbjct:   404 CSATIKILVNILRKYEEYTKLIIEEIIKHGNRLIDNGGI-ISYIWIIGEYCEYIEEAPYL 462

Query:   486 LESLTENWEEEPSAEVRLHLLTAVMKCFFKRPPETQKVXXXXXXXXXXDF-HQDVHDRAL 544
             LE          S    L LLTA +K  ++RP E + +          ++ + ++ D+  
Sbjct:   463 LEEYINL--RNCSYLFMLELLTACVKVLYRRPAEMKNIVSTLFDNILKNYKYPELTDKMF 520

Query:   545 FYHRLLQYNVSVAERVVNPPKQAVSVFADTQSSEIKDRIFDEFNSLSVVYQKPSYMFTD 603
             FY++LL YN   A  ++   K+ V  F+++  + + D++++EFN+LSV+Y++P   F +
Sbjct:   521 FYYKLLSYNYKEAFHIIACKKKIVKNFSESNENLLLDKLYNEFNTLSVLYKQPLNKFVE 579
GO:0030130 "clathrin coat of trans-Golgi network vesicle" evidence=ISS
GO:0016192 "vesicle-mediated transport" evidence=ISS
UNIPROTKB|Q8IBF8 MAL7P1.164 "Adapter-related protein, putative" [Plasmodium falciparum 3D7 (taxid:36329)] Back     alignment and assigned GO terms
FB|FBgn0010380 AP-1-2beta "Adaptor Protein complex 1/2, beta subunit" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0283319 ap4b1 "adaptor-related protein complex 4, beta 1 subunit" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
WB|WBGene00000160 apb-1 [Caenorhabditis elegans (taxid:6239)] Back     alignment and assigned GO terms
TAIR|locus:2117924 AT4G23460 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
MGI|MGI:1096368 Ap1b1 "adaptor protein complex AP-1, beta 1 subunit" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-040426-1284 ap4b1 "adaptor-related protein complex 4, beta 1 subunit" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|Q10567 AP1B1 "AP-1 complex subunit beta-1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F1NCI1 AP1B1 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9LDK9APBLA_ARATHNo assigned EC number0.81370.99640.9952yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query840
pfam01602522 pfam01602, Adaptin_N, Adaptin N terminal region 6e-94
PTZ00429746 PTZ00429, PTZ00429, beta-adaptin; Provisional 9e-75
COG5096757 COG5096, COG5096, Vesicle coat complex, various su 2e-60
pfam09066113 pfam09066, B2-adapt-app_C, Beta2-adaptin appendage 6e-24
smart01020111 smart01020, B2-adapt-app_C, Beta2-adaptin appendag 3e-22
pfam12717171 pfam12717, Cnd1, non-SMC mitotic condensation comp 8e-12
pfam1364688 pfam13646, HEAT_2, HEAT repeats 2e-04
>gnl|CDD|216598 pfam01602, Adaptin_N, Adaptin N terminal region Back     alignment and domain information 
 Score =  304 bits (780), Expect = 6e-94
 Identities = 154/522 (29%), Positives = 270/522 (51%), Gaps = 32/522 (6%)

Query: 41  DDSKRELFKKVISYMTIGIDVSAVFGEMVMCSATSDIVLKKMCYLYVGNYAKVNPDLALL 100
              K+E  KK+I  + +G D+S +F E+V   A++D  LK++ YLY+   A+ +PDLA+L
Sbjct: 19  PRKKKEAVKKLIYLIMLGEDISFLFFEVVKLVASNDFTLKRLGYLYLKLLAEESPDLAIL 78

Query: 101 TINFLQRDCKDEDPMIRGLALRSLCSLRVANLVEYLVGPLGLGLKDNNSYVRTVAVIGVL 160
             N +++D +  +P+IRGLALR+L  +RV  L   L   +   L D + YVR  A + +L
Sbjct: 79  VTNSIKKDLQSPNPLIRGLALRTLSCIRVPELARDLAPDIKKLLVDRDPYVRKKAALAIL 138

Query: 161 KLYHISAPTCIDADFPPTLKHLMLNDPDPQVVANCLSALQEIWSLEASTSEEASREREAL 220
           KLY        D   P  LK L L+D DP VV+  ++ L EI   +     +       L
Sbjct: 139 KLYRKDPDLVRDFLVPE-LKEL-LSDKDPGVVSAAVALLYEIRKNDRLYLNKLLPL---L 193

Query: 221 ISKPVIYYLLNRIKEFSEWAQCLVLELVAKYVPLDSNEIFDIMNLLEDRLQHANGAVVLS 280
           + +     L N +   + W Q  +L L+ +Y P D  E  +++  + + LQ++N AV+  
Sbjct: 194 VRR-----LCNLLTVCNPWLQVKILRLLTRYAPQDPREPKELLEDILNLLQNSNNAVLYE 248

Query: 281 TIKVFLHLTLSMTDVHQQVYERIKAPLLTLVSSGSPEQSYAVLSHLHILVM-RAPFIFAS 339
            +K  +HL     D   ++       L  L+SS      Y  L +L+ ++    P +   
Sbjct: 249 AVKTIIHL-----DPEPELIVLAVNALGRLLSSPDENLRYVALRNLNKILEKHPPAVQHL 303

Query: 340 DYKHFYCQYNEPSYVKKLKLEMLTAVANESNTYEIVTELCEYAANV-DIPIARESIRAVG 398
           D   F  + ++   ++   L++L  + +ESN  EIV EL +Y + + D     + ++A+G
Sbjct: 304 DLIIFCLKTDDDISIRLRALDLLYKLVDESNVKEIVKELLKYVSEIADPEFKIKLVKAIG 363

Query: 399 KIALQQY--DVNAIVDRLLQFLEMEKDYVTAEALVLVKDLLRKYPQWSHDCIA--VVGSI 454
           ++A +++  D    +D LL+ L +   YV  E + +++D++RKYP+   + I   +   +
Sbjct: 364 RLA-EKFPTDAEWCIDVLLELLSLAGSYVVDEIVEVIRDIIRKYPE-LREYILEHLCELL 421

Query: 455 SSQNVQEPKAKAALIWMLGEYSQDMQD-APYILESLTENWEEEPSAEVRLHLLTAVMKCF 513
             ++++ P+A+AA +W+LGEY + + +    +L S+ E +  E S +VRL LLTA++K  
Sbjct: 422 --EDIESPEARAAALWILGEYGELIPNSPSDLLRSILEVFVLE-SLKVRLALLTALVK-L 477

Query: 514 FKRPPE---TQKVLGAALA-AGLADFHQDVHDRALFYHRLLQ 551
               P+      ++   L+ A       ++ DRA+ Y RLL 
Sbjct: 478 SLTFPDEEVQNLIVQVVLSLATQDSSDLELRDRAVEYLRLLS 519

This family consists of the N terminal region of various alpha, beta and gamma subunits of the AP-1, AP-2 and AP-3 adaptor protein complexes. The adaptor protein (AP) complexes are involved in the formation of clathrin-coated pits and vesicles. The N-terminal region of the various adaptor proteins (APs) is constant by comparison to the C-terminal which is variable within members of the AP-2 family; and it has been proposed that this constant region interacts with another uniform component of the coated vesicles. Length = 522
>gnl|CDD|240415 PTZ00429, PTZ00429, beta-adaptin; Provisional Back     alignment and domain information
>gnl|CDD|227427 COG5096, COG5096, Vesicle coat complex, various subunits [Intracellular trafficking and secretion] Back     alignment and domain information
>gnl|CDD|220099 pfam09066, B2-adapt-app_C, Beta2-adaptin appendage, C-terminal sub-domain Back     alignment and domain information
>gnl|CDD|198088 smart01020, B2-adapt-app_C, Beta2-adaptin appendage, C-terminal sub-domain Back     alignment and domain information
>gnl|CDD|221731 pfam12717, Cnd1, non-SMC mitotic condensation complex subunit 1 Back     alignment and domain information
>gnl|CDD|222285 pfam13646, HEAT_2, HEAT repeats Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 840
PTZ00429746 beta-adaptin; Provisional 100.0
KOG1061734 consensus Vesicle coat complex AP-1/AP-2/AP-4, bet 100.0
KOG1060 968 consensus Vesicle coat complex AP-3, beta subunit 100.0
KOG1077938 consensus Vesicle coat complex AP-2, alpha subunit 100.0
PF01602526 Adaptin_N: Adaptin N terminal region; InterPro: IP 100.0
KOG1062866 consensus Vesicle coat complex AP-1, gamma subunit 100.0
COG5096757 Vesicle coat complex, various subunits [Intracellu 100.0
KOG1059877 consensus Vesicle coat complex AP-3, delta subunit 100.0
KOG1058 948 consensus Vesicle coat complex COPI, beta subunit 100.0
KOG1078865 consensus Vesicle coat complex COPI, gamma subunit 100.0
COG5240898 SEC21 Vesicle coat complex COPI, gamma subunit [In 100.0
PF09066114 B2-adapt-app_C: Beta2-adaptin appendage, C-termina 99.91
PF01602526 Adaptin_N: Adaptin N terminal region; InterPro: IP 99.35
PLN03200 2102 cellulose synthase-interactive protein; Provisiona 99.01
PRK13800897 putative oxidoreductase/HEAT repeat-containing pro 98.98
PRK09687280 putative lyase; Provisional 98.96
PF12717178 Cnd1: non-SMC mitotic condensation complex subunit 98.96
PTZ00429746 beta-adaptin; Provisional 98.95
PRK13800897 putative oxidoreductase/HEAT repeat-containing pro 98.87
PLN03200 2102 cellulose synthase-interactive protein; Provisiona 98.84
PF10508503 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; 98.83
PRK09687280 putative lyase; Provisional 98.75
KOG0166514 consensus Karyopherin (importin) alpha [Intracellu 98.47
PF10508503 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; 98.47
KOG0212675 consensus Uncharacterized conserved protein [Funct 98.46
KOG2171 1075 consensus Karyopherin (importin) beta 3 [Nuclear s 98.41
KOG1060 968 consensus Vesicle coat complex AP-3, beta subunit 98.39
KOG02131172 consensus Splicing factor 3b, subunit 1 [RNA proce 98.29
KOG2171 1075 consensus Karyopherin (importin) beta 3 [Nuclear s 98.27
KOG2023885 consensus Nuclear transport receptor Karyopherin-b 98.17
KOG1059877 consensus Vesicle coat complex AP-3, delta subunit 98.14
PF14764459 SPG48: AP-5 complex subunit, vesicle trafficking 98.06
KOG0212675 consensus Uncharacterized conserved protein [Funct 98.03
PF1364688 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I 98.0
KOG2023885 consensus Nuclear transport receptor Karyopherin-b 97.95
KOG1058 948 consensus Vesicle coat complex COPI, beta subunit 97.9
KOG1062866 consensus Vesicle coat complex AP-1, gamma subunit 97.85
KOG0166514 consensus Karyopherin (importin) alpha [Intracellu 97.71
KOG1020 1692 consensus Sister chromatid cohesion protein SCC2/N 97.66
KOG1078865 consensus Vesicle coat complex COPI, gamma subunit 97.6
KOG02131172 consensus Splicing factor 3b, subunit 1 [RNA proce 97.57
KOG4224550 consensus Armadillo repeat protein VAC8 required f 97.54
KOG1824 1233 consensus TATA-binding protein-interacting protein 97.46
KOG1241859 consensus Karyopherin (importin) beta 1 [Nuclear s 97.27
TIGR02270410 conserved hypothetical protein. Members are found 97.26
TIGR02270410 conserved hypothetical protein. Members are found 97.23
KOG04141251 consensus Chromosome condensation complex Condensi 97.22
KOG1824 1233 consensus TATA-binding protein-interacting protein 97.21
PF04826254 Arm_2: Armadillo-like; InterPro: IPR006911 This en 97.21
COG5240898 SEC21 Vesicle coat complex COPI, gamma subunit [In 97.19
KOG0414 1251 consensus Chromosome condensation complex Condensi 97.17
COG1413335 FOG: HEAT repeat [Energy production and conversion 97.11
cd00020120 ARM Armadillo/beta-catenin-like repeats. An approx 97.06
PF05804708 KAP: Kinesin-associated protein (KAP) 96.97
COG1413335 FOG: HEAT repeat [Energy production and conversion 96.97
PF12717178 Cnd1: non-SMC mitotic condensation complex subunit 96.91
COG5181975 HSH155 U2 snRNP spliceosome subunit [RNA processin 96.88
PF12348228 CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi 96.84
KOG1061734 consensus Vesicle coat complex AP-1/AP-2/AP-4, bet 96.8
KOG2259823 consensus Uncharacterized conserved protein [Funct 96.79
KOG1242569 consensus Protein containing adaptin N-terminal re 96.76
KOG10201692 consensus Sister chromatid cohesion protein SCC2/N 96.73
cd00020120 ARM Armadillo/beta-catenin-like repeats. An approx 96.66
PF04826254 Arm_2: Armadillo-like; InterPro: IPR006911 This en 96.54
PF12348228 CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi 96.43
PF05918556 API5: Apoptosis inhibitory protein 5 (API5); Inter 96.42
COG50981128 Chromosome condensation complex Condensin, subunit 96.4
COG5181975 HSH155 U2 snRNP spliceosome subunit [RNA processin 96.37
KOG2259823 consensus Uncharacterized conserved protein [Funct 96.28
PF05804708 KAP: Kinesin-associated protein (KAP) 96.12
KOG1525 1266 consensus Sister chromatid cohesion complex Cohesi 96.08
KOG1240 1431 consensus Protein kinase containing WD40 repeats [ 96.07
COG50981128 Chromosome condensation complex Condensin, subunit 96.02
COG5096757 Vesicle coat complex, various subunits [Intracellu 95.91
PF14807104 AP4E_app_platf: Adaptin AP4 complex epsilon append 95.83
PF1364688 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I 95.76
PF1351355 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O 95.7
PF0298531 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re 95.66
PF1275597 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region 95.62
cd00256429 VATPase_H VATPase_H, regulatory vacuolar ATP synth 95.61
KOG0168 1051 consensus Putative ubiquitin fusion degradation pr 95.34
KOG1242569 consensus Protein containing adaptin N-terminal re 95.26
KOG1241859 consensus Karyopherin (importin) beta 1 [Nuclear s 95.25
KOG09151702 consensus Uncharacterized conserved protein [Funct 95.21
COG5064526 SRP1 Karyopherin (importin) alpha [Intracellular t 95.19
PF02296113 Alpha_adaptin_C: Alpha adaptin AP2, C-terminal dom 95.18
COG5064526 SRP1 Karyopherin (importin) alpha [Intracellular t 95.11
KOG0946 970 consensus ER-Golgi vesicle-tethering protein p115 94.91
KOG1240 1431 consensus Protein kinase containing WD40 repeats [ 94.74
KOG1077 938 consensus Vesicle coat complex AP-2, alpha subunit 94.69
KOG0211759 consensus Protein phosphatase 2A regulatory subuni 94.47
PF12719298 Cnd3: Nuclear condensing complex subunits, C-term 94.34
KOG12481176 consensus Uncharacterized conserved protein [Funct 93.95
COG5215858 KAP95 Karyopherin (importin) beta [Intracellular t 93.7
KOG1820815 consensus Microtubule-associated protein [Cytoskel 93.61
KOG12481176 consensus Uncharacterized conserved protein [Funct 93.38
PF05918556 API5: Apoptosis inhibitory protein 5 (API5); Inter 93.31
PF1036392 DUF2435: Protein of unknown function (DUF2435) 93.29
PF12460415 MMS19_C: RNAPII transcription regulator C-terminal 93.28
KOG15171387 consensus Guanine nucleotide binding protein MIP1 92.96
PF12830187 Nipped-B_C: Sister chromatid cohesion C-terminus 92.79
KOG2956516 consensus CLIP-associating protein [General functi 92.75
KOG1822 2067 consensus Uncharacterized conserved protein [Funct 92.66
KOG0413 1529 consensus Uncharacterized conserved protein relate 92.51
smart00638574 LPD_N Lipoprotein N-terminal Domain. 92.49
KOG19491005 consensus Uncharacterized conserved protein [Funct 92.39
PF1036392 DUF2435: Protein of unknown function (DUF2435) 92.27
PF13251182 DUF4042: Domain of unknown function (DUF4042) 91.62
PF08167165 RIX1: rRNA processing/ribosome biogenesis 91.45
PF1351355 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O 91.28
KOG4224550 consensus Armadillo repeat protein VAC8 required f 91.26
PF14500262 MMS19_N: Dos2-interacting transcription regulator 91.01
KOG1222791 consensus Kinesin associated protein KAP [Intracel 90.75
KOG2025892 consensus Chromosome condensation complex Condensi 90.1
KOG2160342 consensus Armadillo/beta-catenin-like repeat-conta 89.67
PF08713213 DNA_alkylation: DNA alkylation repair enzyme; Inte 89.48
PF12719298 Cnd3: Nuclear condensing complex subunits, C-term 88.9
KOG0211759 consensus Protein phosphatase 2A regulatory subuni 88.61
KOG2160342 consensus Armadillo/beta-catenin-like repeat-conta 88.13
KOG09151702 consensus Uncharacterized conserved protein [Funct 88.04
KOG1949 1005 consensus Uncharacterized conserved protein [Funct 86.74
PF01603409 B56: Protein phosphatase 2A regulatory B subunit ( 86.25
PF02854209 MIF4G: MIF4G domain; InterPro: IPR003890 This entr 86.08
KOG22741005 consensus Predicted importin 9 [Intracellular traf 86.06
PF14664371 RICTOR_N: Rapamycin-insensitive companion of mTOR, 86.0
smart00543200 MIF4G Middle domain of eukaryotic initiation facto 85.02
PF01347618 Vitellogenin_N: Lipoprotein amino terminal region; 84.79
COG5218885 YCG1 Chromosome condensation complex Condensin, su 84.5
KOG1991 1010 consensus Nuclear transport receptor RANBP7/RANBP8 84.24
KOG19911010 consensus Nuclear transport receptor RANBP7/RANBP8 83.43
PF12460415 MMS19_C: RNAPII transcription regulator C-terminal 83.21
KOG0567289 consensus HEAT repeat-containing protein [General 83.16
smart00638574 LPD_N Lipoprotein N-terminal Domain. 83.01
KOG0567289 consensus HEAT repeat-containing protein [General 82.98
KOG2062929 consensus 26S proteasome regulatory complex, subun 82.94
KOG4653982 consensus Uncharacterized conserved protein [Funct 82.19
PF01347618 Vitellogenin_N: Lipoprotein amino terminal region; 82.15
KOG1525 1266 consensus Sister chromatid cohesion complex Cohesi 81.93
KOG1293678 consensus Proteins containing armadillo/beta-caten 81.82
KOG1943 1133 consensus Beta-tubulin folding cofactor D [Posttra 81.49
KOG2973353 consensus Uncharacterized conserved protein [Funct 81.43
KOG4500604 consensus Rho/Rac GTPase guanine nucleotide exchan 80.89
KOG1243690 consensus Protein kinase [General function predict 80.55
>PTZ00429 beta-adaptin; Provisional Back     alignment and domain information 
Probab=100.00  E-value=5.4e-115  Score=1028.17  Aligned_cols=582  Identities=29%  Similarity=0.472  Sum_probs=534.0

Q ss_pred             CCCCCCCCCCCCcHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHHHhcCCCccchhhhhhhhccCCCcchHHHHHHHHH
Q 003201            9 RSPSPSQPSGKGEVSDLKSQLRQLAGSRAPGIDDSKRELFKKVISYMTIGIDVSAVFGEMVMCSATSDIVLKKMCYLYVG   88 (840)
Q Consensus         9 ~~~~~~~~~~k~Ei~elr~~L~~~~~~~~~~~~~~kk~~lkKlI~~m~lG~DvS~lF~~Vi~l~~S~d~~~KkL~YLyl~   88 (840)
                      +...-|..++|||++|||++|++       .+..+|++++||+|++|++|+|||++|++|+++++|+|+++|||||||++
T Consensus        21 ~~~~~f~~~~kge~~ELr~~L~s-------~~~~~kk~alKkvIa~mt~G~DvS~LF~dVvk~~~S~d~elKKLvYLYL~   93 (746)
T PTZ00429         21 TGSKYFAQTRRGEGAELQNDLNG-------TDSYRKKAAVKRIIANMTMGRDVSYLFVDVVKLAPSTDLELKKLVYLYVL   93 (746)
T ss_pred             CccccccccccchHHHHHHHHHC-------CCHHHHHHHHHHHHHHHHCCCCchHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            44566777789999999999986       45578999999999999999999999999999999999999999999999


Q ss_pred             HhccCCCchHHHHHHHHHhhcCCCChhhHhHHHHHhhCCChhhhHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhhcCC
Q 003201           89 NYAKVNPDLALLTINFLQRDCKDEDPMIRGLALRSLCSLRVANLVEYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAP  168 (840)
Q Consensus        89 ~~~~~~~dl~lL~iNtl~KDl~~~Np~ir~LALr~l~~I~~~~i~e~l~~~v~~~L~d~~pyVRK~Aala~~kl~~~~p~  168 (840)
                      +|++.+||+++|+||+|+|||+|+||++||+|||+||+|+++++++++.++|++++.|++|||||+|++|++|+|+.+|+
T Consensus        94 ~ya~~~pelalLaINtl~KDl~d~Np~IRaLALRtLs~Ir~~~i~e~l~~~lkk~L~D~~pYVRKtAalai~Kly~~~pe  173 (746)
T PTZ00429         94 STARLQPEKALLAVNTFLQDTTNSSPVVRALAVRTMMCIRVSSVLEYTLEPLRRAVADPDPYVRKTAAMGLGKLFHDDMQ  173 (746)
T ss_pred             HHcccChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCcc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccCCCchHHHHHHHhcCCChhHHHHHHHHHHHHHhhccCcchHHHHHHHhhccHHHHHHHHHhhccCChhHHHHHHHHH
Q 003201          169 TCIDADFPPTLKHLMLNDPDPQVVANCLSALQEIWSLEASTSEEASREREALISKPVIYYLLNRIKEFSEWAQCLVLELV  248 (840)
Q Consensus       169 ~~~~~~~~~~L~~lLL~D~d~~Vv~~al~~L~eI~~~~~~~~~~~~~~~~~li~~~~~~~Ll~~l~~~~~W~Qi~iL~lL  248 (840)
                      .+.+.+|.+.|.++ +.|+||+|++||+.+|++|...+|+        .+. +.++++++|++.+++++||+|+.||++|
T Consensus       174 lv~~~~~~~~L~~L-L~D~dp~Vv~nAl~aL~eI~~~~~~--------~l~-l~~~~~~~Ll~~L~e~~EW~Qi~IL~lL  243 (746)
T PTZ00429        174 LFYQQDFKKDLVEL-LNDNNPVVASNAAAIVCEVNDYGSE--------KIE-SSNEWVNRLVYHLPECNEWGQLYILELL  243 (746)
T ss_pred             cccccchHHHHHHH-hcCCCccHHHHHHHHHHHHHHhCch--------hhH-HHHHHHHHHHHHhhcCChHHHHHHHHHH
Confidence            98778999999997 7999999999999999999876553        122 3456799999999999999999999999


Q ss_pred             HhcCCCChhHHHHHHHHHHHHhccCChHHHHHHHHHHHhccCCC-chhHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHH
Q 003201          249 AKYVPLDSNEIFDIMNLLEDRLQHANGAVVLSTIKVFLHLTLSM-TDVHQQVYERIKAPLLTLVSSGSPEQSYAVLSHLH  327 (840)
Q Consensus       249 ~~y~p~~~~e~~~il~~l~~~L~~~n~aVvleaik~il~l~~~~-~~~~~~~l~rl~~~L~~lLss~~~nirY~aL~~l~  327 (840)
                      .+|.|.+.++++++++.+.++|+|+|+||+++|+|+|+++.... ++...+++.|++.||++|++ +++|+||++|++|.
T Consensus       244 ~~y~P~~~~e~~~il~~l~~~Lq~~N~AVVl~Aik~il~l~~~~~~~~~~~~~~rl~~pLv~L~s-s~~eiqyvaLr~I~  322 (746)
T PTZ00429        244 AAQRPSDKESAETLLTRVLPRMSHQNPAVVMGAIKVVANLASRCSQELIERCTVRVNTALLTLSR-RDAETQYIVCKNIH  322 (746)
T ss_pred             HhcCCCCcHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHHHHHhhC-CCccHHHHHHHHHH
Confidence            99999999999999999999999999999999999999997653 45667888999999998865 68999999999999


Q ss_pred             HHHhhCCCcccccccEEEEccCCCHHHHHHHHHHHHhccCCCCHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhhcCC-
Q 003201          328 ILVMRAPFIFASDYKHFYCQYNEPSYVKKLKLEMLTAVANESNTYEIVTELCEYAANVDIPIARESIRAVGKIALQQYD-  406 (840)
Q Consensus       328 ~l~~~~p~~~~~~~~~f~c~~~dp~~IK~~kLdiL~~L~n~~Nv~~Iv~EL~~y~~~~d~~~~~~~i~aI~~la~k~~~-  406 (840)
                      .|++++|.+|.+|++.|||+++||.|||++|||||+.|||++|+.+|++||.+|+++.|.+|++++|++||+||.|+|+ 
T Consensus       323 ~i~~~~P~lf~~~~~~Ff~~~~Dp~yIK~~KLeIL~~Lane~Nv~~IL~EL~eYa~d~D~ef~r~aIrAIg~lA~k~~~~  402 (746)
T PTZ00429        323 ALLVIFPNLLRTNLDSFYVRYSDPPFVKLEKLRLLLKLVTPSVAPEILKELAEYASGVDMVFVVEVVRAIASLAIKVDSV  402 (746)
T ss_pred             HHHHHCHHHHHHHHHhhhcccCCcHHHHHHHHHHHHHHcCcccHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHhChHH
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999999999996 


Q ss_pred             hHHHHHHHHHHhhhcCchhhHHHHHHHHHHHhhCCCcchhHHHHHHh-hhcccCCchHHHHHHHHHHcCcCCCCCChHHH
Q 003201          407 VNAIVDRLLQFLEMEKDYVTAEALVLVKDLLRKYPQWSHDCIAVVGS-ISSQNVQEPKAKAALIWMLGEYSQDMQDAPYI  485 (840)
Q Consensus       407 ~~~~v~~Ll~LL~~~~~~v~~e~v~~i~~il~~~p~~~~~~~~~l~~-l~~~~i~~~~ak~a~iwilGEy~~~i~~~~~i  485 (840)
                      ..|||++|+++++.+++++ .|++.++++|+|+||+.+  .+..++. +..+.+++|++|++++||||||++.+++++++
T Consensus       403 a~~cV~~Ll~ll~~~~~~v-~e~i~vik~IlrkyP~~~--il~~L~~~~~~~~i~e~~AKaaiiWILGEy~~~I~~a~~~  479 (746)
T PTZ00429        403 APDCANLLLQIVDRRPELL-PQVVTAAKDIVRKYPELL--MLDTLVTDYGADEVVEEEAKVSLLWMLGEYCDFIENGKDI  479 (746)
T ss_pred             HHHHHHHHHHHhcCCchhH-HHHHHHHHHHHHHCccHH--HHHHHHHhhcccccccHHHHHHHHHHHHhhHhhHhhHHHH
Confidence            5899999999999877764 588999999999999863  3333333 22367899999999999999999999999999


Q ss_pred             HHHHHHhhccCCcHHHHHHHHHHHhHHhhcCChhHHHHHHHHHHhhcc-CCChHHHhHHHHHHHHccCCH--HHHHhhcC
Q 003201          486 LESLTENWEEEPSAEVRLHLLTAVMKCFFKRPPETQKVLGAALAAGLA-DFHQDVHDRALFYHRLLQYNV--SVAERVVN  562 (840)
Q Consensus       486 l~~l~~~~~~e~~~~vk~~lLta~~Kl~~~~p~e~~~~l~~vL~~~~~-d~d~dVrdRA~~Y~rLL~~~~--~~a~~vv~  562 (840)
                      |+.++++|.+|+ ++||+++||+++|+|+++|++++++++++|+.+++ +.|+||||||++|||||+.++  +.|++||+
T Consensus       480 L~~~i~~f~~E~-~~VqlqlLta~vKlfl~~p~~~~~~l~~vL~~~t~~~~d~DVRDRA~~Y~rLLs~~~~~~~a~~iv~  558 (746)
T PTZ00429        480 IQRFIDTIMEHE-QRVQLAILSAAVKMFLRDPQGMEPQLNRVLETVTTHSDDPDVRDRAFAYWRLLSKGITVAQMKKVVH  558 (746)
T ss_pred             HHHHHhhhccCC-HHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHcCCCcHHHHHHHHc
Confidence            999999999999 99999999999999999999999999999998865 589999999999999999874  67899999


Q ss_pred             CCCCCccccccCCCHHHHHHHHHhhCcchhhccCCCcccccCCCCCCCcc
Q 003201          563 PPKQAVSVFADTQSSEIKDRIFDEFNSLSVVYQKPSYMFTDKDYRGPFEF  612 (840)
Q Consensus       563 ~~~p~~~~~~~~~~~~~~~~l~~~~~tls~vy~k~~~~f~~~~~~~~~~~  612 (840)
                      +++|+++...+..+++++++|+.+|||||+||+||++.|+++.+.+..+.
T Consensus       559 ~~~~~i~~~~~~~d~~~l~~L~~~~~tlssvY~kp~~~f~~~~~~~~~~~  608 (746)
T PTZ00429        559 GQMVPVNVDSTFSDAMTMADLKKSLNTAAIVFARPYQSFLPPYGLADVEL  608 (746)
T ss_pred             CCCCCCCcccccCCHHHHHHHHHhcCceeeeecCCHHHhcCchhcccccc
Confidence            99999876545567789999999999999999999999999987654443

>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment Back     alignment and domain information
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion] Back     alignment and domain information
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion] Back     alignment and domain information
>PF09066 B2-adapt-app_C: Beta2-adaptin appendage, C-terminal sub-domain; InterPro: IPR015151 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment Back     alignment and domain information
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment Back     alignment and domain information
>PLN03200 cellulose synthase-interactive protein; Provisional Back     alignment and domain information
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional Back     alignment and domain information
>PRK09687 putative lyase; Provisional Back     alignment and domain information
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1 Back     alignment and domain information
>PTZ00429 beta-adaptin; Provisional Back     alignment and domain information
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional Back     alignment and domain information
>PLN03200 cellulose synthase-interactive protein; Provisional Back     alignment and domain information
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells Back     alignment and domain information
>PRK09687 putative lyase; Provisional Back     alignment and domain information
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells Back     alignment and domain information
>KOG0212 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification] Back     alignment and domain information
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF14764 SPG48: AP-5 complex subunit, vesicle trafficking Back     alignment and domain information
>KOG0212 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A Back     alignment and domain information
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair] Back     alignment and domain information
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification] Back     alignment and domain information
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only] Back     alignment and domain information
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>TIGR02270 conserved hypothetical protein Back     alignment and domain information
>TIGR02270 conserved hypothetical protein Back     alignment and domain information
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only] Back     alignment and domain information
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function Back     alignment and domain information
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion] Back     alignment and domain information
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>COG1413 FOG: HEAT repeat [Energy production and conversion] Back     alignment and domain information
>cd00020 ARM Armadillo/beta-catenin-like repeats Back     alignment and domain information
>PF05804 KAP: Kinesin-associated protein (KAP) Back     alignment and domain information
>COG1413 FOG: HEAT repeat [Energy production and conversion] Back     alignment and domain information
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1 Back     alignment and domain information
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification] Back     alignment and domain information
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ] Back     alignment and domain information
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG2259 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair] Back     alignment and domain information
>cd00020 ARM Armadillo/beta-catenin-like repeats Back     alignment and domain information
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function Back     alignment and domain information
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ] Back     alignment and domain information
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms Back     alignment and domain information
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning] Back     alignment and domain information
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification] Back     alignment and domain information
>KOG2259 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF05804 KAP: Kinesin-associated protein (KAP) Back     alignment and domain information
>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms] Back     alignment and domain information
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning] Back     alignment and domain information
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion] Back     alignment and domain information
>PF14807 AP4E_app_platf: Adaptin AP4 complex epsilon appendage platform Back     alignment and domain information
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A Back     alignment and domain information
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B Back     alignment and domain information
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 [] Back     alignment and domain information
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region Back     alignment and domain information
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments Back     alignment and domain information
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG0915 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion] Back     alignment and domain information
>PF02296 Alpha_adaptin_C: Alpha adaptin AP2, C-terminal domain; InterPro: IPR003164 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment Back     alignment and domain information
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion] Back     alignment and domain information
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms] Back     alignment and domain information
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms] Back     alignment and domain information
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain Back     alignment and domain information
>KOG1248 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion] Back     alignment and domain information
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton] Back     alignment and domain information
>KOG1248 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms Back     alignment and domain information
>PF10363 DUF2435: Protein of unknown function (DUF2435) Back     alignment and domain information
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins Back     alignment and domain information
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus Back     alignment and domain information
>KOG2956 consensus CLIP-associating protein [General function prediction only] Back     alignment and domain information
>KOG1822 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown] Back     alignment and domain information
>smart00638 LPD_N Lipoprotein N-terminal Domain Back     alignment and domain information
>KOG1949 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF10363 DUF2435: Protein of unknown function (DUF2435) Back     alignment and domain information
>PF13251 DUF4042: Domain of unknown function (DUF4042) Back     alignment and domain information
>PF08167 RIX1: rRNA processing/ribosome biogenesis Back     alignment and domain information
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B Back     alignment and domain information
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II Back     alignment and domain information
>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF08713 DNA_alkylation: DNA alkylation repair enzyme; InterPro: IPR014825 These proteins are predicted to be DNA alkylation repair enzymes Back     alignment and domain information
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain Back     alignment and domain information
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms] Back     alignment and domain information
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0915 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG1949 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism Back     alignment and domain information
>PF02854 MIF4G: MIF4G domain; InterPro: IPR003890 This entry represents an MIF4G-like domain Back     alignment and domain information
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure] Back     alignment and domain information
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term Back     alignment and domain information
>smart00543 MIF4G Middle domain of eukaryotic initiation factor 4G (eIF4G) Back     alignment and domain information
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 [] Back     alignment and domain information
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning] Back     alignment and domain information
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins Back     alignment and domain information
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only] Back     alignment and domain information
>smart00638 LPD_N Lipoprotein N-terminal Domain Back     alignment and domain information
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only] Back     alignment and domain information
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG4653 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 [] Back     alignment and domain information
>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only] Back     alignment and domain information
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG2973 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms] Back     alignment and domain information
>KOG1243 consensus Protein kinase [General function prediction only] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query840
2vgl_B591 Ap2 Clathrin Adaptor Core Length = 591 3e-98
2xa7_B592 Ap2 Clathrin Adaptor Core In Active Complex With Ca 3e-98
1w63_B584 Ap1 Clathrin Adaptor Core Length = 584 2e-93
2jkr_A623 Ap2 Clathrin Adaptor Core With Dileucine Peptide Rm 2e-07
2vgl_A621 Ap2 Clathrin Adaptor Core Length = 621 3e-07
>pdb|2VGL|B Chain B, Ap2 Clathrin Adaptor Core Length = 591 Back     alignment and structure 
Iteration: 1

 Score =  356 bits (913), Expect = 3e-98,   Method: Compositional matrix adjust.
 Identities = 210/592 (35%), Positives = 335/592 (56%), Gaps = 23/592 (3%)
Query: 17  SGKGEVSDLKSQLRQLAGSRAPGIDDSKRELFKKVISYMTIGIDVSAVFGEMVMCSATSD 76
           + KGE+ +LK++L      +       ++E  KKVI+ MT+G DVS++F ++V C  T +
Sbjct: 10  NKKGEIFELKAELNNEKKEK-------RKEAVKKVIAAMTVGKDVSSLFPDVVNCMQTDN 62
Query: 77  IVLKKMCYLYVGNYAKVNPDLALLTINFLQRDCKDEDPMIRGLALRSLCSLRVANLVEYL 136
           + LKK+ YLY+ NYAK  PD+A++ +N   +DC+D +P+IR LA+R++  +RV  + EYL
Sbjct: 63  LELKKLVYLYLMNYAKSQPDMAIMAVNSFVKDCEDPNPLIRALAVRTMGCIRVDKITEYL 122
Query: 137 VGPLGLGLKDNNSYVRTVAVIGVLKLYHISAPTCIDADFPPTLKHLMLNDPDPQVVANCL 196
             PL   LKD + YVR  A + V KL+ I+A    D  F  +L+ L + D +P VVAN +
Sbjct: 123 CEPLRKCLKDEDPYVRKTAAVCVAKLHDINAQMVEDQGFLDSLRDL-IADSNPMVVANAV 181
Query: 197 SALQEIWXXXXXXXXXXXXXXXXXXXKPVIYYLLNRIKEFSEWAQCLVLELVAKYVPLDS 256
           +AL EI                       I  LL  + E +EW Q  +L+ ++ Y P D 
Sbjct: 182 AALSEISESHPNSNLLDLNPQN-------INKLLTALNECTEWGQIFILDCLSNYNPKDD 234
Query: 257 NEIFDIMNLLEDRLQHANGAVVLSTIKV---FLHLTLSMTDVHQQVYERIKAPLLTLVSS 313
            E   I   +  RL HAN AVVLS +KV   FL L    +D +  + +++  PL+TL+ S
Sbjct: 235 REAQSICERVTPRLSHANSAVVLSAVKVLMKFLELLPKDSDYYNMLLKKLAPPLVTLL-S 293
Query: 314 GSPEQSYAVLSHLHILVMRAPFIFASDYKHFYCQYNEPSYVKKLKLEMLTAVANESNTYE 373
           G PE  Y  L +++++V + P I   + K F+ +YN+P YVK  KL+++  +A+++N  +
Sbjct: 294 GEPEVQYVALRNINLIVQKRPEILKQEIKVFFVKYNDPIYVKLEKLDIMIRLASQANIAQ 353
Query: 374 IVTELCEYAANVDIPIARESIRAVGKIALQ-QYDVNAIVDRLLQFLEMEKDYVTAEALVL 432
           ++ EL EYA  VD+   R+++RA+G+ A++ +      V  LL  ++ + +YV  EA+V+
Sbjct: 354 VLAELKEYATEVDVDFVRKAVRAIGRCAIKVEQSAERCVSTLLDLIQTKVNYVVQEAIVV 413
Query: 433 VKDLLRKYPQWSHDCIAVVGSISSQNVQEPKAKAALIWMLGEYSQDMQDAPYILESLTEN 492
           ++D+ RKYP      IA +   +  ++ EP A+AA+IW++GEY++ + +A  +LES  E 
Sbjct: 414 IRDIFRKYPNKYESIIATLCE-NLDSLDEPDARAAMIWIVGEYAERIDNADELLESFLEG 472
Query: 493 WEEEPSAEVRLHLLTAVMKCFFKRPPETQKVXXXXXXXXXXDFHQ-DVHDRALFYHRLLQ 551
           + +E S +V+L LLTA++K F K+P ETQ++          D    D+ DR   Y RLL 
Sbjct: 473 FHDE-STQVQLTLLTAIVKLFLKKPSETQELVQQVLSLATQDSDNPDLRDRGYIYWRLLS 531
Query: 552 YNVSVAERVVNPPKQAVSVFADTQSSEIKDRIFDEFNSLSVVYQKPSYMFTD 603
            +   A+ VV   K  +S   D     + D +     SL+ VY KP   F +
Sbjct: 532 TDPVTAKEVVLSEKPLISEETDLIEPTLLDELICHIGSLASVYHKPPNAFVE 583
>pdb|2XA7|B Chain B, Ap2 Clathrin Adaptor Core In Active Complex With Cargo Peptides Length = 592 Back     alignment and structure
>pdb|1W63|B Chain B, Ap1 Clathrin Adaptor Core Length = 584 Back     alignment and structure
>pdb|2JKR|A Chain A, Ap2 Clathrin Adaptor Core With Dileucine Peptide Rm( Phosphos)qikrllse Length = 623 Back     alignment and structure
>pdb|2VGL|A Chain A, Ap2 Clathrin Adaptor Core Length = 621 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query840
2vgl_B591 AP-2 complex subunit beta-1; cytoplasmic vesicle, 0.0
2vgl_A621 Adaptor protein complex AP-2, alpha 2 subunit; cyt 1e-114
1w63_A618 Adapter-related protein complex 1 gamma 1 subunit; 1e-113
3tjz_B355 Coatomer subunit gamma; protein trafficking, golgi 4e-52
3u0r_A507 Apoptosis inhibitor 5; heat repeat, armadillo repe 1e-10
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-09
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-07
1b3u_A588 Protein (protein phosphatase PP2A); scaffold prote 4e-09
1oyz_A280 Hypothetical protein YIBA; structural genomics, PS 8e-09
1oyz_A280 Hypothetical protein YIBA; structural genomics, PS 1e-05
3ltj_A201 Alpharep-4; protein engineering, heat-like repeat, 8e-06
3ltj_A201 Alpharep-4; protein engineering, heat-like repeat, 1e-05
3ltj_A201 Alpharep-4; protein engineering, heat-like repeat, 4e-05
3ltm_A211 Alpha-REP4; protein engineering, heat-like repeat, 9e-06
3ltm_A211 Alpha-REP4; protein engineering, heat-like repeat, 1e-05
3ltm_A211 Alpha-REP4; protein engineering, heat-like repeat, 8e-05
4fdd_A852 Transportin-1; heat repeats, karyopherin, nuclear 1e-05
1te4_A131 Conserved protein MTH187; methanobacterium thermoa 2e-05
1te4_A131 Conserved protein MTH187; methanobacterium thermoa 3e-04
2db0_A253 253AA long hypothetical protein; heat repeats, hel 1e-04
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B Length = 591 Back     alignment and structure
 Score =  548 bits (1413), Expect = 0.0
 Identities = 208/595 (34%), Positives = 339/595 (56%), Gaps = 23/595 (3%)

Query: 15  QPSGKGEVSDLKSQLRQLAGSRAPGIDDSKRELFKKVISYMTIGIDVSAVFGEMVMCSAT 74
             + KGE+ +LK++L            + ++E  KKVI+ MT+G DVS++F ++V C  T
Sbjct: 8   TTNKKGEIFELKAELNN-------EKKEKRKEAVKKVIAAMTVGKDVSSLFPDVVNCMQT 60

Query: 75  SDIVLKKMCYLYVGNYAKVNPDLALLTINFLQRDCKDEDPMIRGLALRSLCSLRVANLVE 134
            ++ LKK+ YLY+ NYAK  PD+A++ +N   +DC+D +P+IR LA+R++  +RV  + E
Sbjct: 61  DNLELKKLVYLYLMNYAKSQPDMAIMAVNSFVKDCEDPNPLIRALAVRTMGCIRVDKITE 120

Query: 135 YLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAPTCIDADFPPTLKHLMLNDPDPQVVAN 194
           YL  PL   LKD + YVR  A + V KL+ I+A    D  F  +L+ L + D +P VVAN
Sbjct: 121 YLCEPLRKCLKDEDPYVRKTAAVCVAKLHDINAQMVEDQGFLDSLRDL-IADSNPMVVAN 179

Query: 195 CLSALQEIWSLEASTSEEASREREALISKPVIYYLLNRIKEFSEWAQCLVLELVAKYVPL 254
            ++AL EI       SE         ++   I  LL  + E +EW Q  +L+ ++ Y P 
Sbjct: 180 AVAALSEI-------SESHPNSNLLDLNPQNINKLLTALNECTEWGQIFILDCLSNYNPK 232

Query: 255 DSNEIFDIMNLLEDRLQHANGAVVLSTIKVFLHLTLSM---TDVHQQVYERIKAPLLTLV 311
           D  E   I   +  RL HAN AVVLS +KV +     +   +D +  + +++  PL+TL+
Sbjct: 233 DDREAQSICERVTPRLSHANSAVVLSAVKVLMKFLELLPKDSDYYNMLLKKLAPPLVTLL 292

Query: 312 SSGSPEQSYAVLSHLHILVMRAPFIFASDYKHFYCQYNEPSYVKKLKLEMLTAVANESNT 371
           S   PE  Y  L +++++V + P I   + K F+ +YN+P YVK  KL+++  +A+++N 
Sbjct: 293 SG-EPEVQYVALRNINLIVQKRPEILKQEIKVFFVKYNDPIYVKLEKLDIMIRLASQANI 351

Query: 372 YEIVTELCEYAANVDIPIARESIRAVGKIALQQYDVNA-IVDRLLQFLEMEKDYVTAEAL 430
            +++ EL EYA  VD+   R+++RA+G+ A++        V  LL  ++ + +YV  EA+
Sbjct: 352 AQVLAELKEYATEVDVDFVRKAVRAIGRCAIKVEQSAERCVSTLLDLIQTKVNYVVQEAI 411

Query: 431 VLVKDLLRKYPQWSHDCIAVVGSISSQNVQEPKAKAALIWMLGEYSQDMQDAPYILESLT 490
           V+++D+ RKYP      IA +   +  ++ EP A+AA+IW++GEY++ + +A  +LES  
Sbjct: 412 VVIRDIFRKYPNKYESIIATLCE-NLDSLDEPDARAAMIWIVGEYAERIDNADELLESFL 470

Query: 491 ENWEEEPSAEVRLHLLTAVMKCFFKRPPETQKVLGAALAAGLADF-HQDVHDRALFYHRL 549
           E + +E   +V+L LLTA++K F K+P ETQ+++   L+    D  + D+ DR   Y RL
Sbjct: 471 EGFHDES-TQVQLTLLTAIVKLFLKKPSETQELVQQVLSLATQDSDNPDLRDRGYIYWRL 529

Query: 550 LQYNVSVAERVVNPPKQAVSVFADTQSSEIKDRIFDEFNSLSVVYQKPSYMFTDK 604
           L  +   A+ VV   K  +S   D     + D +     SL+ VY KP   F + 
Sbjct: 530 LSTDPVTAKEVVLSEKPLISEETDLIEPTLLDELICHIGSLASVYHKPPNAFVEG 584
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A Length = 621 Back     alignment and structure
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1 Length = 618 Back     alignment and structure
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus} Length = 355 Back     alignment and structure
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A Length = 507 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588 Back     alignment and structure
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 Length = 280 Back     alignment and structure
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 Length = 280 Back     alignment and structure
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} Length = 201 Back     alignment and structure
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} Length = 201 Back     alignment and structure
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} Length = 201 Back     alignment and structure
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} Length = 211 Back     alignment and structure
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} Length = 211 Back     alignment and structure
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} Length = 211 Back     alignment and structure
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* Length = 852 Back     alignment and structure
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16 Length = 131 Back     alignment and structure
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16 Length = 131 Back     alignment and structure
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} Length = 253 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query840
2vgl_B591 AP-2 complex subunit beta-1; cytoplasmic vesicle, 100.0
2vgl_A621 Adaptor protein complex AP-2, alpha 2 subunit; cyt 100.0
1w63_A618 Adapter-related protein complex 1 gamma 1 subunit; 100.0
3tjz_B355 Coatomer subunit gamma; protein trafficking, golgi 100.0
1b3u_A588 Protein (protein phosphatase PP2A); scaffold prote 99.7
2g30_A258 AP-2 complex subunit beta-1; alpha-helical ARH pep 99.63
4fdd_A852 Transportin-1; heat repeats, karyopherin, nuclear 99.57
4fdd_A852 Transportin-1; heat repeats, karyopherin, nuclear 99.52
1b3u_A588 Protein (protein phosphatase PP2A); scaffold prote 99.5
2vgl_B591 AP-2 complex subunit beta-1; cytoplasmic vesicle, 99.48
1u6g_C 1230 TIP120 protein, CAND1; cullin repeat, heat repeat, 99.43
2bpt_A861 Importin beta-1 subunit; nuclear transport, nucleo 99.39
1wa5_B530 Importin alpha subunit; nuclear transport/complex, 99.38
2bpt_A861 Importin beta-1 subunit; nuclear transport, nucleo 99.36
1qgr_A876 Protein (importin beta subunit); transport recepto 99.35
2jdq_A450 Importin alpha-1 subunit; transport, PB2 subunit, 99.35
2jdq_A450 Importin alpha-1 subunit; transport, PB2 subunit, 99.35
1wa5_B530 Importin alpha subunit; nuclear transport/complex, 99.34
1w63_A618 Adapter-related protein complex 1 gamma 1 subunit; 99.32
4b8j_A528 Importin subunit alpha-1A; transport protein, nucl 99.32
2z6g_A780 B-catenin; FULL-length, beta-catenin, cell adhesio 99.31
2z6g_A780 B-catenin; FULL-length, beta-catenin, cell adhesio 99.31
4b8j_A528 Importin subunit alpha-1A; transport protein, nucl 99.27
2z6h_A644 Catenin beta-1, beta-catenin; C-terminal domain, a 99.26
1jdh_A529 Beta-catenin; beta-catenin, protein-protein comple 99.26
1u6g_C 1230 TIP120 protein, CAND1; cullin repeat, heat repeat, 99.24
1oyz_A280 Hypothetical protein YIBA; structural genomics, PS 99.22
1qgr_A876 Protein (importin beta subunit); transport recepto 99.21
1ibr_B462 P95, importin beta-1 subunit, nuclear factor; smal 99.15
3ul1_B510 Importin subunit alpha-2; arm repeat, armadillo re 99.07
1jdh_A529 Beta-catenin; beta-catenin, protein-protein comple 99.06
4hxt_A252 De novo protein OR329; structural genomics, PSI-bi 99.01
2vgl_A621 Adaptor protein complex AP-2, alpha 2 subunit; cyt 99.0
2z6h_A644 Catenin beta-1, beta-catenin; C-terminal domain, a 99.0
3now_A810 UNC-45 protein, SD10334P; armadillo repeat, HSP90, 98.99
1oyz_A280 Hypothetical protein YIBA; structural genomics, PS 98.99
3ltm_A211 Alpha-REP4; protein engineering, heat-like repeat, 98.98
3tpo_A529 Importin subunit alpha-2; nuclear import, protein 98.96
3ltj_A201 Alpharep-4; protein engineering, heat-like repeat, 98.93
3ul1_B510 Importin subunit alpha-2; arm repeat, armadillo re 98.92
3tpo_A529 Importin subunit alpha-2; nuclear import, protein 98.84
1ibr_B462 P95, importin beta-1 subunit, nuclear factor; smal 98.83
3now_A810 UNC-45 protein, SD10334P; armadillo repeat, HSP90, 98.82
4hxt_A252 De novo protein OR329; structural genomics, PSI-bi 98.79
3ltm_A211 Alpha-REP4; protein engineering, heat-like repeat, 98.74
4db8_A252 Armadillo-repeat protein; solenoid repeat, de novo 98.71
3ltj_A201 Alpharep-4; protein engineering, heat-like repeat, 98.69
4db8_A252 Armadillo-repeat protein; solenoid repeat, de novo 98.69
3tjz_B355 Coatomer subunit gamma; protein trafficking, golgi 98.5
4db6_A210 Armadillo repeat protein; solenoid repeat, armadil 98.46
4db6_A210 Armadillo repeat protein; solenoid repeat, armadil 98.45
3b2a_A265 TON_1937, putative uncharacterized protein; heat-r 98.39
1xm9_A457 Plakophilin 1; armadillo repeat, cell adhesion; 2. 98.39
1wa5_C 960 Importin alpha RE-exporter; nuclear transport/comp 98.27
2qk2_A242 LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2 98.17
3l6x_A584 Catenin delta-1; catenin, armadillo, ARM, JMD, CE 98.15
1xm9_A457 Plakophilin 1; armadillo repeat, cell adhesion; 2. 98.06
1te4_A131 Conserved protein MTH187; methanobacterium thermoa 98.06
1te4_A131 Conserved protein MTH187; methanobacterium thermoa 98.05
3nmw_A354 APC variant protein; ARMADIILO repeats domain, cel 97.95
4ady_A963 RPN2, 26S proteasome regulatory subunit RPN2; prot 97.92
2qk1_A249 Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h 97.91
3opb_A778 SWI5-dependent HO expression protein 4; heat and a 97.88
2x19_B 963 Importin-13; nuclear transport, protein transport; 97.87
3l6x_A584 Catenin delta-1; catenin, armadillo, ARM, JMD, CE 97.85
2db0_A253 253AA long hypothetical protein; heat repeats, hel 97.84
3nmz_A458 APC variant protein; protein-protein complex, arma 97.82
2x1g_F971 Cadmus; transport protein, developmental protein, 97.81
3nmz_A458 APC variant protein; protein-protein complex, arma 97.78
2qk2_A242 LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2 97.77
1xqr_A296 HSPBP1 protein; armadillo repeat, superhelical twi 97.55
3opb_A778 SWI5-dependent HO expression protein 4; heat and a 97.52
1xqr_A296 HSPBP1 protein; armadillo repeat, superhelical twi 97.52
1wa5_C960 Importin alpha RE-exporter; nuclear transport/comp 97.48
2qk1_A249 Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h 97.46
3nmw_A354 APC variant protein; ARMADIILO repeats domain, cel 97.28
3b2a_A265 TON_1937, putative uncharacterized protein; heat-r 97.26
4ady_A963 RPN2, 26S proteasome regulatory subunit RPN2; prot 97.1
2db0_A253 253AA long hypothetical protein; heat repeats, hel 97.09
2x19_B963 Importin-13; nuclear transport, protein transport; 97.0
3ibv_A 980 Exportin-T; karyopherin, heat repeat, cytoplasm, n 96.73
2x1g_F971 Cadmus; transport protein, developmental protein, 96.67
3a6p_A 1204 Exportin-5; exportin-5, RANGTP, nuclearexport, imp 96.66
4ffb_C278 Protein STU2; tubulin fold, heat repeats, cytoskel 96.64
3m1i_C 1049 Exportin-1; heat repeat, GTP-binding, nucleotide-b 96.61
3u0r_A507 Apoptosis inhibitor 5; heat repeat, armadillo repe 96.47
3m1i_C 1049 Exportin-1; heat repeat, GTP-binding, nucleotide-b 96.44
4ffb_C278 Protein STU2; tubulin fold, heat repeats, cytoskel 96.37
3grl_A651 General vesicular transport factor P115; vesicle t 96.36
3grl_A651 General vesicular transport factor P115; vesicle t 96.04
3gs3_A257 Symplekin, LD45768P; helix-turn-helix heat repeat 95.32
3o2t_A386 Symplekin; heat repeat, scaffold, protein binding; 95.23
3hs8_A273 Adaptor protein complex AP-2, alpha 2 subunit; ada 95.13
3tt9_A233 Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} 95.04
4hat_C1023 Exportin-1; heat repeat, nuclear export, RAN-ranbp 94.9
3ibv_A980 Exportin-T; karyopherin, heat repeat, cytoplasm, n 94.83
3gs3_A257 Symplekin, LD45768P; helix-turn-helix heat repeat 94.79
2of3_A266 ZYG-9; multifunctional macromolecule, kinetochore, 93.29
3a6p_A 1204 Exportin-5; exportin-5, RANGTP, nuclearexport, imp 93.14
1ho8_A480 Vacuolar ATP synthase subunit H; heat repeat, hydr 92.79
3u0r_A507 Apoptosis inhibitor 5; heat repeat, armadillo repe 92.54
3o2t_A386 Symplekin; heat repeat, scaffold, protein binding; 92.13
1kyf_A247 Alpha-adaptin C; protein-peptide complex, endocyto 92.12
4hat_C 1023 Exportin-1; heat repeat, nuclear export, RAN-ranbp 90.58
3l9t_A240 Putative uncharacterized protein SMU.31; hypotheti 90.25
2of3_A266 ZYG-9; multifunctional macromolecule, kinetochore, 89.83
1lsh_A 1056 Lipovitellin (LV-1N, LV-1C); vitellogenin, lipopro 89.07
3l9t_A240 Putative uncharacterized protein SMU.31; hypotheti 88.47
1lsh_A1056 Lipovitellin (LV-1N, LV-1C); vitellogenin, lipopro 88.07
3tt9_A233 Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} 87.9
3gjx_A1073 Exportin-1; transport, cytoplasm, nucleus, RNA-bin 87.38
4gmo_A684 Putative uncharacterized protein; ARM, heat, solen 84.81
2iw3_A 986 Elongation factor 3A; acetylation, ATP-binding, pr 84.7
3dad_A339 FH1/FH2 domain-containing protein 1; formin, FHOD1 82.34
2iw3_A 986 Elongation factor 3A; acetylation, ATP-binding, pr 81.92
3oc3_A800 Helicase MOT1, MOT1; regulation of transcription, 80.73
3gjx_A 1073 Exportin-1; transport, cytoplasm, nucleus, RNA-bin 80.35
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B Back     alignment and structure
Probab=100.00  E-value=9.8e-93  Score=842.04  Aligned_cols=578  Identities=36%  Similarity=0.617  Sum_probs=532.4

Q ss_pred             CCCCCCCCCCcHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHHHhcCCCccchhhhhhhhccCCCcchHHHHHHHHHHh
Q 003201           11 PSPSQPSGKGEVSDLKSQLRQLAGSRAPGIDDSKRELFKKVISYMTIGIDVSAVFGEMVMCSATSDIVLKKMCYLYVGNY   90 (840)
Q Consensus        11 ~~~~~~~~k~Ei~elr~~L~~~~~~~~~~~~~~kk~~lkKlI~~m~lG~DvS~lF~~Vi~l~~S~d~~~KkL~YLyl~~~   90 (840)
                      ...|...+|||+.|||++|++       ++.++|+++++|+||+|++|+|++++|++|+++++++|+++||+||+|+..+
T Consensus         4 ~~~f~~~~~~e~~~i~~~L~~-------~~~~~k~~~~~kli~~~~~G~d~~~~~~~vi~l~~s~~~~~Krl~yl~l~~~   76 (591)
T 2vgl_B            4 SKYFTTNKKGEIFELKAELNN-------EKKEKRKEAVKKVIAAMTVGKDVSSLFPDVVNCMQTDNLELKKLVYLYLMNY   76 (591)
T ss_dssp             CCTTCCCSSSHHHHHHHHTTS-------SCHHHHHHHHHHHHHHHHTTCCCGGGHHHHHHTTSSSCHHHHHHHHHHHHHH
T ss_pred             chhcccccCChHHHHHHHHcC-------CCHHHHHHHHHHHHHHHHCCCChHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence            345677889999999999987       4568999999999999999999999999999999999999999999999999


Q ss_pred             ccCCCchHHHHHHHHHhhcCCCChhhHhHHHHHhhCCChhhhHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhhcCCcc
Q 003201           91 AKVNPDLALLTINFLQRDCKDEDPMIRGLALRSLCSLRVANLVEYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAPTC  170 (840)
Q Consensus        91 ~~~~~dl~lL~iNtl~KDl~~~Np~ir~LALr~l~~I~~~~i~e~l~~~v~~~L~d~~pyVRK~Aala~~kl~~~~p~~~  170 (840)
                      ++.+||++++++|+|+|||+|+||.+|++|||+||+++.+++.+++.++|++++.|++|||||+|++|+.|+|+.+|+.+
T Consensus        77 ~~~~~e~~~l~~n~l~kdL~~~n~~ir~~AL~~L~~i~~~~~~~~l~~~l~~~L~d~~~~VRk~A~~al~~i~~~~p~~~  156 (591)
T 2vgl_B           77 AKSQPDMAIMAVNSFVKDCEDPNPLIRALAVRTMGCIRVDKITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLHDINAQMV  156 (591)
T ss_dssp             HHHSHHHHHTTHHHHGGGSSSSSHHHHHHHHHHHHTCCSGGGHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHSSCCCH
T ss_pred             cccCchHHHHHHHHHHHHcCCCCHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhhChhhc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999988


Q ss_pred             cCCCchHHHHHHHhcCCChhHHHHHHHHHHHHHhhccCcchHHHHHHHhhccHHHHHHHHHhhccCChhHHHHHHHHHHh
Q 003201          171 IDADFPPTLKHLMLNDPDPQVVANCLSALQEIWSLEASTSEEASREREALISKPVIYYLLNRIKEFSEWAQCLVLELVAK  250 (840)
Q Consensus       171 ~~~~~~~~L~~lLL~D~d~~Vv~~al~~L~eI~~~~~~~~~~~~~~~~~li~~~~~~~Ll~~l~~~~~W~Qi~iL~lL~~  250 (840)
                      .+.+|++.+..+ ++|+|++|+.+|+.+|.+|+..+++..       ...+.+..+.+|++.+.+++||+|+++|+++..
T Consensus       157 ~~~~~~~~l~~l-L~d~d~~V~~~A~~aL~~i~~~~~~~~-------~~~l~~~~~~~Ll~~l~~~~~~~q~~il~~l~~  228 (591)
T 2vgl_B          157 EDQGFLDSLRDL-IADSNPMVVANAVAALSEISESHPNSN-------LLDLNPQNINKLLTALNECTEWGQIFILDCLSN  228 (591)
T ss_dssp             HHHHHHHHHHHT-TSCSCHHHHHHHHHHHHHHTTSCCSCC-------SCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHT
T ss_pred             ccccHHHHHHHH-hCCCChhHHHHHHHHHHHHHhhCCCcc-------chhccHHHHHHHHHcCCCCCchHHHHHHHHHHH
Confidence            545799999998 799999999999999999998766420       012334578899999999999999999999999


Q ss_pred             cCCCChhHHHHHHHHHHHHhccCChHHHHHHHHHHHhccCC---CchhHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHH
Q 003201          251 YVPLDSNEIFDIMNLLEDRLQHANGAVVLSTIKVFLHLTLS---MTDVHQQVYERIKAPLLTLVSSGSPEQSYAVLSHLH  327 (840)
Q Consensus       251 y~p~~~~e~~~il~~l~~~L~~~n~aVvleaik~il~l~~~---~~~~~~~~l~rl~~~L~~lLss~~~nirY~aL~~l~  327 (840)
                      |.|.++++..++++.+.++++|.|++|+++|+++++++...   .++..+.++.++.++|+.+++ +++|+||+||++|.
T Consensus       229 l~~~~~~~~~~~l~~l~~~l~~~~~~V~~ea~~~i~~l~~~~~~~~~~~~~~~~~~~~~L~~L~~-~d~~vr~~aL~~l~  307 (591)
T 2vgl_B          229 YNPKDDREAQSICERVTPRLSHANSAVVLSAVKVLMKFLELLPKDSDYYNMLLKKLAPPLVTLLS-GEPEVQYVALRNIN  307 (591)
T ss_dssp             SCCCSHHHHHHHHHHHTTCSCSSTTHHHHHHHHHHHHSCCSCCBTTBSHHHHHHHTHHHHHHHTT-SCHHHHHHHHHHHH
T ss_pred             hCCCChHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHhc-CCccHHHHHHHHHH
Confidence            99999999999999999999999999999999999998742   234445567788888887775 78999999999999


Q ss_pred             HHHhhCCCcccccccEEEEccCCCHHHHHHHHHHHHhccCCCCHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhhcCC-
Q 003201          328 ILVMRAPFIFASDYKHFYCQYNEPSYVKKLKLEMLTAVANESNTYEIVTELCEYAANVDIPIARESIRAVGKIALQQYD-  406 (840)
Q Consensus       328 ~l~~~~p~~~~~~~~~f~c~~~dp~~IK~~kLdiL~~L~n~~Nv~~Iv~EL~~y~~~~d~~~~~~~i~aI~~la~k~~~-  406 (840)
                      .+++.+|+.+..|++.|+|+++||.+||++|+++|+.|+|++|++.|++||.+|+.+.|.+|+++++++||.||.+|+. 
T Consensus       308 ~i~~~~p~~~~~~~~~~~~~~~d~~~Ir~~al~~L~~l~~~~nv~~iv~~L~~~l~~~d~~~r~~~v~aI~~la~~~~~~  387 (591)
T 2vgl_B          308 LIVQKRPEILKQEIKVFFVKYNDPIYVKLEKLDIMIRLASQANIAQVLAELKEYATEVDVDFVRKAVRAIGRCAIKVEQS  387 (591)
T ss_dssp             HHHHHCCSTTTTCTTTTSCCTTSCHHHHHHHHHHHHHTCCSSTHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHhChHHHHHHHHhheeccCChHHHHHHHHHHHHHHCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhChhH
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999999999984 


Q ss_pred             hHHHHHHHHHHhhhcCchhhHHHHHHHHHHHhhCCCcchhHHHHHHhhhcccCCchHHHHHHHHHHcCcCCCCCChHHHH
Q 003201          407 VNAIVDRLLQFLEMEKDYVTAEALVLVKDLLRKYPQWSHDCIAVVGSISSQNVQEPKAKAALIWMLGEYSQDMQDAPYIL  486 (840)
Q Consensus       407 ~~~~v~~Ll~LL~~~~~~v~~e~v~~i~~il~~~p~~~~~~~~~l~~l~~~~i~~~~ak~a~iwilGEy~~~i~~~~~il  486 (840)
                      ..||+++|+++++..++++..+++.++++|++++|+.++.++..++..+ +++.+|+++++++|++||||+.++++++++
T Consensus       388 ~~~~v~~Ll~ll~~~~~~v~~e~i~~l~~ii~~~p~~~~~~v~~L~~~l-~~~~~~~~~~~~~wilGey~~~~~~~~~~l  466 (591)
T 2vgl_B          388 AERCVSTLLDLIQTKVNYVVQEAIVVIRDIFRKYPNKYESIIATLCENL-DSLDEPDARAAMIWIVGEYAERIDNADELL  466 (591)
T ss_dssp             HHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHSCSSCCTTHHHHHHTT-TTCCSHHHHHHHHHHHHTTCTTCTTHHHHH
T ss_pred             HHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHCcchHHHHHHHHHHHH-HhccCHHHHHHHHHHHHcccccccCHHHHH
Confidence            5899999999999999999999999999999999999888877776654 567889999999999999999999999999


Q ss_pred             HHHHHhhccCCcHHHHHHHHHHHhHHhhcCChhHHHHHHHHHHhhccC-CChHHHhHHHHHHHHccCCHHHHHhhcCCCC
Q 003201          487 ESLTENWEEEPSAEVRLHLLTAVMKCFFKRPPETQKVLGAALAAGLAD-FHQDVHDRALFYHRLLQYNVSVAERVVNPPK  565 (840)
Q Consensus       487 ~~l~~~~~~e~~~~vk~~lLta~~Kl~~~~p~e~~~~l~~vL~~~~~d-~d~dVrdRA~~Y~rLL~~~~~~a~~vv~~~~  565 (840)
                      +.++++|..++ +.||.++|||++|+|.+.|++.+++++++|+.+.+| .|+||||||++||+||+.+++.++++|+++|
T Consensus       467 ~~l~~~~~~~~-~~vr~~~l~a~~Kl~~~~p~~~~~~i~~ll~~~~~d~~d~evrdRA~~y~~ll~~~~~~~~~~v~~~~  545 (591)
T 2vgl_B          467 ESFLEGFHDES-TQVQLTLLTAIVKLFLKKPSETQELVQQVLSLATQDSDNPDLRDRGYIYWRLLSTDPVTAKEVVLSEK  545 (591)
T ss_dssp             HHHSTTCSSSC-HHHHHHHHHHHHHHHTTCCSTTHHHHHHHHHHHHTTCCCHHHHHHHHHHHTTTTTCTTHHHHHHTSCC
T ss_pred             HHHHHhhccCC-HHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHCcCHHHHHHHHcCCC
Confidence            99999999998 999999999999999999988888999999998766 7999999999999999998899999999999


Q ss_pred             CCccccccCCCHHHHHHHHHhhCcchhhccCCCcccccCCC
Q 003201          566 QAVSVFADTQSSEIKDRIFDEFNSLSVVYQKPSYMFTDKDY  606 (840)
Q Consensus       566 p~~~~~~~~~~~~~~~~l~~~~~tls~vy~k~~~~f~~~~~  606 (840)
                      |+++...+..+++++++|+.+|||+|+||+||+|.|+++..
T Consensus       546 p~~~~~~~~~~~~~~~~~~~~~~tl~~~~~~~~~~~~~~~~  586 (591)
T 2vgl_B          546 PLISEETDLIEPTLLDELICHIGSLASVYHKPPNAFVEGSH  586 (591)
T ss_dssp             CCCCSCSSCCCHHHHHHHHTTTTSSHHHHTSCGGGCC----
T ss_pred             CCCCCCccccCHHHHHHHHHHhCcchhhhcCCHHHHcCCcc
Confidence            99998888889999999999999999999999999997763
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A Back     alignment and structure
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1 Back     alignment and structure
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus} Back     alignment and structure
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Back     alignment and structure
>2g30_A AP-2 complex subunit beta-1; alpha-helical ARH peptide, platform domain, sandwich domain, endocytosis, adaptor, endocytosis/exocytosis complex; 1.60A {Homo sapiens} SCOP: b.1.10.1 d.105.1.1 PDB: 1e42_A 3h1z_A 3hs9_A 2iv9_A 2iv8_A Back     alignment and structure
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* Back     alignment and structure
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* Back     alignment and structure
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Back     alignment and structure
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B Back     alignment and structure
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A Back     alignment and structure
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A Back     alignment and structure
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Back     alignment and structure
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A Back     alignment and structure
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A Back     alignment and structure
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Back     alignment and structure
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Back     alignment and structure
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Back     alignment and structure
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1 Back     alignment and structure
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A Back     alignment and structure
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Back     alignment and structure
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Back     alignment and structure
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A Back     alignment and structure
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Back     alignment and structure
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Back     alignment and structure
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A Back     alignment and structure
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 Back     alignment and structure
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A Back     alignment and structure
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A Back     alignment and structure
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ... Back     alignment and structure
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Back     alignment and structure
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene} Back     alignment and structure
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A Back     alignment and structure
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Back     alignment and structure
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Back     alignment and structure
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 Back     alignment and structure
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} Back     alignment and structure
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B Back     alignment and structure
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} Back     alignment and structure
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ... Back     alignment and structure
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B Back     alignment and structure
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A Back     alignment and structure
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Back     alignment and structure
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene} Back     alignment and structure
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} Back     alignment and structure
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Back     alignment and structure
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} Back     alignment and structure
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Back     alignment and structure
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus} Back     alignment and structure
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Back     alignment and structure
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Back     alignment and structure
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus} Back     alignment and structure
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Back     alignment and structure
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A Back     alignment and structure
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster} Back     alignment and structure
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Back     alignment and structure
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Back     alignment and structure
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16 Back     alignment and structure
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16 Back     alignment and structure
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Back     alignment and structure
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N Back     alignment and structure
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae} Back     alignment and structure
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae} Back     alignment and structure
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B Back     alignment and structure
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Back     alignment and structure
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} Back     alignment and structure
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Back     alignment and structure
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster} Back     alignment and structure
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Back     alignment and structure
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster} Back     alignment and structure
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Back     alignment and structure
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae} Back     alignment and structure
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Back     alignment and structure
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A Back     alignment and structure
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae} Back     alignment and structure
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Back     alignment and structure
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus} Back     alignment and structure
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N Back     alignment and structure
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} Back     alignment and structure
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B Back     alignment and structure
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T* Back     alignment and structure
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster} Back     alignment and structure
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens} Back     alignment and structure
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae} Back     alignment and structure
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B Back     alignment and structure
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A Back     alignment and structure
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B Back     alignment and structure
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae} Back     alignment and structure
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A Back     alignment and structure
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A Back     alignment and structure
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster} Back     alignment and structure
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A* Back     alignment and structure
>3hs8_A Adaptor protein complex AP-2, alpha 2 subunit; adaptor complex AP-2, endocytosis, cell membrane, coated PIT binding, membrane, disease mutation; 1.90A {Mus musculus} Back     alignment and structure
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} Back     alignment and structure
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B Back     alignment and structure
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T* Back     alignment and structure
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster} Back     alignment and structure
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans} Back     alignment and structure
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens} Back     alignment and structure
>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9 Back     alignment and structure
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A Back     alignment and structure
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A* Back     alignment and structure
>1kyf_A Alpha-adaptin C; protein-peptide complex, endocytosis, endocytosis/exocytosis complex; 1.22A {Mus musculus} SCOP: b.1.10.1 d.105.1.1 PDB: 1ky7_A 1kyd_A 1ky6_A 1kyu_A 1qtp_A 1qts_A 2vj0_A 1w80_A 1b9k_A Back     alignment and structure
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B Back     alignment and structure
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans} Back     alignment and structure
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans} Back     alignment and structure
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1 Back     alignment and structure
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans} Back     alignment and structure
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1 Back     alignment and structure
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} Back     alignment and structure
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A Back     alignment and structure
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A Back     alignment and structure
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Back     alignment and structure
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens} Back     alignment and structure
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Back     alignment and structure
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi} Back     alignment and structure
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 840
d2vglb_579 a.118.1.10 (B:) Adaptin beta subunit N-terminal fr 1e-123
d2vgla_584 a.118.1.10 (A:) Adaptin alpha C subunit N-terminal 3e-87
d1e42a2113 d.105.1.1 (A:825-937) Beta2-adaptin AP2, C-termina 5e-22
d1oyza_276 a.118.1.16 (A:) Hypothetical protein YibA {Escheri 3e-09
d1qbkb_888 a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapi 1e-07
d1u6gc_ 1207 a.118.1.2 (C:) Cullin-associated NEDD8-dissociated 7e-07
d1u6gc_1207 a.118.1.2 (C:) Cullin-associated NEDD8-dissociated 2e-04
d1b3ua_588 a.118.1.2 (A:) Constant regulatory domain of prote 3e-05
d1b3ua_588 a.118.1.2 (A:) Constant regulatory domain of prote 9e-05
d1b3ua_588 a.118.1.2 (A:) Constant regulatory domain of prote 0.003
>d1e42a2 d.105.1.1 (A:825-937) Beta2-adaptin AP2, C-terminal subdomain {Human (Homo sapiens) [TaxId: 9606]} Length = 113 Back     information, alignment and structure
>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]} Length = 276 Back     information, alignment and structure
>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} Length = 888 Back     information, alignment and structure
>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Length = 1207 Back     information, alignment and structure
>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Length = 1207 Back     information, alignment and structure
>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 588 Back     information, alignment and structure
>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 588 Back     information, alignment and structure
>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 588 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query840
d2vglb_579 Adaptin beta subunit N-terminal fragment {Human (H 100.0
d2vgla_584 Adaptin alpha C subunit N-terminal fragment {Mouse 100.0
d1e42a2113 Beta2-adaptin AP2, C-terminal subdomain {Human (Ho 99.9
d1b3ua_588 Constant regulatory domain of protein phosphatase 99.64
d1b3ua_588 Constant regulatory domain of protein phosphatase 99.43
d2vglb_579 Adaptin beta subunit N-terminal fragment {Human (H 99.27
d1q1sc_434 Importin alpha {Mouse (Mus musculus) [TaxId: 10090 99.15
d1u6gc_ 1207 Cullin-associated NEDD8-dissociated protein 1 (Tip 99.13
d1jdha_529 beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} 99.05
d1qbkb_888 Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96 99.0
d1u6gc_ 1207 Cullin-associated NEDD8-dissociated protein 1 (Tip 98.97
d1q1sc_434 Importin alpha {Mouse (Mus musculus) [TaxId: 10090 98.97
d1oyza_276 Hypothetical protein YibA {Escherichia coli [TaxId 98.92
d1wa5b_503 Karyopherin alpha {Baker's yeast (Saccharomyces ce 98.91
d1qbkb_888 Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96 98.85
d1jdha_529 beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} 98.8
d1oyza_276 Hypothetical protein YibA {Escherichia coli [TaxId 98.8
d2bpta1861 Importin beta {Baker's yeast (Saccharomyces cerevi 98.78
d1wa5b_503 Karyopherin alpha {Baker's yeast (Saccharomyces ce 98.71
d2bpta1861 Importin beta {Baker's yeast (Saccharomyces cerevi 98.7
d1ibrb_458 Importin beta {Human (Homo sapiens) [TaxId: 9606]} 98.61
d2vgla_584 Adaptin alpha C subunit N-terminal fragment {Mouse 98.6
d1qgra_876 Importin beta {Human (Homo sapiens) [TaxId: 9606]} 98.59
d1te4a_111 MTH187 {Archaeon Methanobacterium thermoautotrophi 98.36
d1xm9a1457 Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} 98.22
d1ibrb_458 Importin beta {Human (Homo sapiens) [TaxId: 9606]} 98.19
d1qgra_876 Importin beta {Human (Homo sapiens) [TaxId: 9606]} 98.18
d1te4a_111 MTH187 {Archaeon Methanobacterium thermoautotrophi 98.02
d1xqra1264 Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi 97.76
d1wa5c_ 959 Exportin Cse1p {Baker's yeast (Saccharomyces cerev 97.42
d1xqra1264 Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi 97.41
d1xm9a1457 Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} 97.22
d1kyfa2114 Alpa-adaptin AP2, C-terminal subdomain {Mouse (Mus 95.62
d1lsha1336 Lipovitellin-phosvitin complex, superhelical domai 94.73
d1wa5c_959 Exportin Cse1p {Baker's yeast (Saccharomyces cerev 94.51
d1lrva_233 Leucine-rich repeat variant {Azotobacter vinelandi 91.3
d1ho8a_477 Regulatory subunit H of the V-type ATPase {Baker's 86.54
d1lsha1336 Lipovitellin-phosvitin complex, superhelical domai 82.4
>d1e42a2 d.105.1.1 (A:825-937) Beta2-adaptin AP2, C-terminal subdomain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Back     information, alignment and structure
>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Back     information, alignment and structure
>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1kyfa2 d.105.1.1 (A:825-938) Alpa-adaptin AP2, C-terminal subdomain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1lsha1 a.118.4.1 (A:285-620) Lipovitellin-phosvitin complex, superhelical domain {Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]} Back     information, alignment and structure
>d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1lrva_ a.118.1.5 (A:) Leucine-rich repeat variant {Azotobacter vinelandii [TaxId: 354]} Back     information, alignment and structure
>d1ho8a_ a.118.1.9 (A:) Regulatory subunit H of the V-type ATPase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1lsha1 a.118.4.1 (A:285-620) Lipovitellin-phosvitin complex, superhelical domain {Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]} Back     information, alignment and structure