Citrus Sinensis ID: 003213

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------84
MQKCIDKGSELQIRSVIALDHLKNYIYIEADKEAHVKEACKGLRNIYSQKVMLVPIREMTDVLAVESKAIDLSRDTWVRMKIGNYKGDLAKVVDVDNVRQRVTVKLIPRIDLQALANKLEGREVAKKKPFVPPPRFMNVDEARELHIRVERRRDPMTGDYFENIGGMLFKDGFLYKTVSMKSISAQNIQPTFDELEKFRTPGENGESDIASLSTLFANRKKGHFMKGDAVIVIKGDLKNLKGWVEKVDEENVHIRPEMKGLPKTLAVNSKELCKYFEPGNHVKVVSGTQAGATGMVLKVEQHVLIILSDTTKEDIRVFADDVVESSEVTTGITKIGDYELRDLVLLDNNSFGVIIRVESEAFQVLKGVPDRPEVALVKLREIKCKLEKKSNVQDRNKNTVAVKDVVRIVEGPCKGKQGPVEHIYRGILFIHDRHHLEHAGFICAKSSSCVVVGGSRANGDRNGDAYSRFNSLRTPPRIPQSPGRYSRGGPPAGGRNRGGRGGHDALVGTTVKVRLGPYKGYRGRVVDVKGQSVRVELESQMKVVTVDRSMISDNVVVSTPYRDTPRYGMGSETPMHPSRTPLHPYMTPMRDAGATPIHDGMRTPMRDRAWNPYTPMSPPRDNWEDGNPGSWGTSPQYQPGSPPSRAYEAPTPGSGWASTPGGNYSDAGTPRDSSSTYVNAPSPYLPSTPGGQPMTPNSASYLPGTPGGQPMTPGTGGLDAMSPVIGADNEGPWFMPDILVRRSGEESVVGVIREVLPDGSCRVVLGSSGNGDTITALPNEIEIVPPRKTDKIKIMGGPHRGATGKLIGVDGTDGIVKVDVSLDVKILDMAILAKLAQP
ccccccccccccEEEEEEccccccEEEEEEccHHHHHHHHHccccEEEcEEEEEcHHHHHHHccccccccccccccEEEEEccccccccEEEEEEEccccEEEEEEEEcccHHHHHHcccccccccccccccccccccHHHHHHccccEEEEcccccccEEEEEccEEEEccEEEEEEEcccEEEccccccHHHHHHcccccccccccHHHHHHHHHcccccccccccEEEEEcccccccEEEEEEEEccEEEEEEcccccccEEEEcccccccccccccEEEEEccEEcccEEEEEEEEccEEEEEEcccccEEEEEcccccccccccccccccccEEEcEEEEEccccEEEEEEEccccEEEcccccccccEEEEEHHHHHHcccccccEEcccccEEEcccEEEEEcccccccEEEEEEEEEcEEEEEEccEEcccEEEEEEcccEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEccccccccccEEEEEcccEEEEEEccccEEEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEcccccccEEEEEEEcccccEEEEEcccccccEEEEccccEEEccccccccEEEEcccccccEEEEEEEEcccEEEEEcccccEEEEEHHHHHccccc
cccHcccccccEEEEEEEcccccEEEEEEcccHHHHHHHHHcccHHHcccEEEEEHHHcHHHEEEEccccccccccEEEEEcccEccccEEEEEEcccccEEEEEEEEEcccccccccccccccccccccccccccccHHHHHHHcccEEEccccccccEEEEEcccEEEccEEEEEEEEEEEEEccccccHHHHHHHccccccccccHHHHHHHHHcccccccccccEEEEEEccEccEEEEEEEEcccEEEEEccccccccccEccHHHHHHHcccccEEEEEEEEcccccEEEEEEcccEEEEEEccccccEEEcHHHHHHHHHHccccccccccEEccEEEEccccEEEEEEEccccEEEEEEccccccEEEEEHHHHHcccccccEEEcccccEEEEccEEEEEEcccccccEEEEEEEEEEEEEEEccEEccccEEEEEccEEEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEcccccEEEEEEEccccEEEEEEEEccEEEEEEHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEcccccEEEEEEEccccEEEEEEcccccEEEEEEcccccEEcccccccEEEEEEccccccEEEEEEEccccEEEEEcccccEEEEEHHHHHHHccc
mqkcidkgselQIRSVIALDHLKNYIYIEADKEAHVKEACKGLRNIYSQKVMLVPIREMTDVLAVESKAIDLSRDTWVRMKIgnykgdlakvvdvdnvrqrvtvkliprIDLQALANKLegrevakkkpfvppprfmnvdEARELHIRVerrrdpmtgdyfeniggmlfkdgfLYKTVSMKSisaqniqptFDELekfrtpgengesdIASLSTLFANrkkghfmkgDAVIVIKGDLKNLKGWVEKVdeenvhirpemkglpkTLAVNSKElckyfepgnhvkvvsgtqagaTGMVLKVEQHVLIILSDTTKEDIRVFADdvvessevttgitkigdyelrdlvlldnnsfGVIIRVESEAFQvlkgvpdrpeVALVKLREIKCKLekksnvqdrnkntvaVKDVVRIvegpckgkqgpvehiYRGILFihdrhhlehagficakssscvvvggsrangdrngdaysrfnslrtppripqspgrysrggppaggrnrggrgghdalvgTTVKvrlgpykgyrgrvvdvkgQSVRVELESQMKVVTVDrsmisdnvvvstpyrdtprygmgsetpmhpsrtplhpymtpmrdagatpihdgmrtpmrdrawnpytpmspprdnwedgnpgswgtspqyqpgsppsrayeaptpgsgwastpggnysdagtprdssstyvnapspylpstpggqpmtpnsasylpgtpggqpmtpgtggldamspvigadnegpwfmpdilvrrsgeeSVVGVIREvlpdgscrvvlgssgngdtitalpneieivpprktdkikimggphrgatgkligvdgtdgivKVDVSLDVKILDMAILAKLAQP
mqkcidkgselqIRSVIALDHLKNYIYIEADKEAHVKEACKGLRNIYSQKVMLVPIREMTDVLAVEskaidlsrdtwVRMKIGnykgdlakvvdvdnvrqrvtvklipridlqalanklegrevakkkpfvppprfmnvdearelhirverrrdpmtgdYFENIGGMLFKDGFLYKTVSMKSISAQNIQPTFDELEKFRTPGENGESDIASLSTLFANRKKGHFMKGDAVIVIKGDLKNLKGWVEKVdeenvhirpemkglpkTLAVNSKELCKYFEPGNHVKVVSGTQAGATGMVLKVEQHVLIIlsdttkedIRVFAddvvessevttgitkigdyelrdLVLLDNNSFGVIIRVESeafqvlkgvpdrpevALVKLREikcklekksnvqdrnkntvavkdvvrivegpckgkqgpvEHIYRGILFIHDRHHLEHAGFICAKSSSCVVVGGSrangdrngdaysrfnslrtppripqspgrysrggppaggrnrggrgghdalvgttvkvrlgpykgyrgrvvdvkgqsvrvelesqmkvvtvdrsmisdnvvvstpyrdtprygmgsetpmhpsrTPLHPYMTPMRDAGATPIHDGMRTPMRDRAWNPYTPMSPPRDNWEDGNPGSWGTSPQYQPGSPPSRAYEAPTPGSGWASTPGGNYSDAGTPRDSSSTYVNAPSPYLPSTPGGQPMTPNSASYLPGTPGGQPMTPGTGGLDAMSPVIGADNEGPWFMPDILVRRSGEESVVGVIRevlpdgscrvvlgssgngdtitalpneieivpprktdkikimggphrgatgkligvdgtdGIVKVDVSLDVKILDMAILAKLAQP
MQKCIDKGSELQIRSVIALDHLKNYIYIEADKEAHVKEACKGLRNIYSQKVMLVPIREMTDVLAVESKAIDLSRDTWVRMKIGNYKGDLAKVVDVDNVRQRVTVKLIPRIDLQALANKLEGREVAKKKPFVPPPRFMNVDEARELHIRVERRRDPMTGDYFENIGGMLFKDGFLYKTVSMKSISAQNIQPTFDELEKFRTPGENGESDIASLSTLFANRKKGHFMKGDAVIVIKGDLKNLKGWVEKVDEENVHIRPEMKGLPKTLAVNSKELCKYFEPGNHVKVVSGTQAGATGMVLKVEQHVLIILSDTTKEDIRVFADDVVESSEVTTGITKIGDYELRDLVLLDNNSFGVIIRVESEAFQVLKGVPDRPEVALVKLREIKCKLEKKSNVQDRNKNTVAVKDVVRIVEGPCKGKQGPVEHIYRGILFIHDRHHLEHAGFICAKSSSCVVVGGSRANGDRNGDAYSRFNSLRTPPRIPQSPGRYSrggppaggrnrggrggHDALVGTTVKVRLGPYKGYRGRVVDVKGQSVRVELESQMKVVTVDRSMISDNVVVSTPYRDTPRYGMGSETPMHPSRTPLHPYMTPMRDAGATPIHDGMRTPMRDRAWNPYTPMSPPRDNWEDGNPGSWGTSPQYQPGSPPSRAYEAPTPGSGWASTPGGNYSDAGTPRDSSSTYVNAPSPYLPSTPGGQPMTPNSASYLpgtpggqpmtpgtggLDAMSPVIGADNEGPWFMPDILVRRSGEESVVGVIREVLPDGSCRVVLGSSGNGDTITALPNEIEIVPPRKTDKIKIMGGPHRGATGKLIGVDGTDGIVKVDVSLDVKILDMAILAKLAQP
**********LQIRSVIALDHLKNYIYIEADKEAHVKEACKGLRNIYSQKVMLVPIREMTDVLAVESKAIDLSRDTWVRMKIGNYKGDLAKVVDVDNVRQRVTVKLIPRIDLQALANKLEG*****************V**ARELHIRVERRRDPMTGDYFENIGGMLFKDGFLYKTVSMKSISA**************************LSTLFANRKKGHFMKGDAVIVIKGDLKNLKGWVEKVDEENVHIRPEMKGLPKTLAVNSKELCKYFEPGNHVKVVSGTQAGATGMVLKVEQHVLIILSDTTKEDIRVFADDVVESSEVTTGITKIGDYELRDLVLLDNNSFGVIIRVESEAFQVLKGVPDRPEVALVKLREIKCKLEK*******NKNTVAVKDVVRIVEGPCKGKQGPVEHIYRGILFIHDRHHLEHAGFICAKSSSCVVVGG**************************************************ALVGTTVKVRLGPYKGYRGRVVDVKGQSVRVELESQMKVVTVDRSMISDNVVVS*********************************************************************************************************************************************************************VIGADNEGPWFMPDILVRRSGEESVVGVIREVLPDGSCRVVLGSSGNGDTITALPNEIEIVPPRKTDKIKIMGGPHRGATGKLIGVDGTDGIVKVDVSLDVKILDMAILAK****
*******GSELQIRSVIALDHLKNYIYIEADKEAHVKEACKGLRNIYSQKVMLVPIREMTDVLAVESKAIDLSRDTWVRMKIGNYKGDLAKVVDVDNVRQRVTVKLIPRIDL************************MNVDEARELH******RDPMTGDYFENIGGMLFKDGFLYKTVSMKSISAQNIQPTFDELEKFRTPGENGE*********************DAVIVIKGDLKNLKGWVEKVDEENVHIRPEMKGLPKTLAVNSKELCKYFEPGNHVKVVSGTQAGATGMVLKVEQHVLIILSDTTKEDIRVFA******************YELRDLVLLDNNSFGVIIRVESEAFQVL****************************DRNKNTVAVKDVVRIVEGPCKGKQGPVEHIYRGILFIHDRHHLEHAGFICAKSSSC**************************************************************KVRLGPYKGYRGRVVDVKGQSVRVELESQMKVVTVDRS********************************************************************************************************************************************************************************************************GVIREVLPDGSCRVVLGSSGNGDTITALPNEIEIVPPRKTDKIKIMGGPHRGATGKLIGVDGTDGIVKVDVSLDVKILDMAILAKLA**
********SELQIRSVIALDHLKNYIYIEADKEAHVKEACKGLRNIYSQKVMLVPIREMTDVLAVESKAIDLSRDTWVRMKIGNYKGDLAKVVDVDNVRQRVTVKLIPRIDLQALANKLEGREVAKKKPFVPPPRFMNVDEARELHIRVERRRDPMTGDYFENIGGMLFKDGFLYKTVSMKSISAQNIQPTFDELEKFRTPGENGESDIASLSTLFANRKKGHFMKGDAVIVIKGDLKNLKGWVEKVDEENVHIRPEMKGLPKTLAVNSKELCKYFEPGNHVKVVSGTQAGATGMVLKVEQHVLIILSDTTKEDIRVFADDVVESSEVTTGITKIGDYELRDLVLLDNNSFGVIIRVESEAFQVLKGVPDRPEVALVKLREIKCKLEKKSNVQDRNKNTVAVKDVVRIVEGPCKGKQGPVEHIYRGILFIHDRHHLEHAGFICAKSSSCVVVGGSRANGDRNGDAYSRFNSLRTPPRIP*********************GGHDALVGTTVKVRLGPYKGYRGRVVDVKGQSVRVELESQMKVVTVDRSMISDNVVVSTPYRDTPRYGMGSETPMHPSRTPLHPYMTPMRDAGATPIHDGMRTPMRDRAWNPYTPMSPPRDNWEDGNPGSWG***********************WASTPGGNYS************VNAPSPYLPSTPGGQPMTPNSASYLPGTPGGQPMTPGTGGLDAMSPVIGADNEGPWFMPDILVRRSGEESVVGVIREVLPDGSCRVVLGSSGNGDTITALPNEIEIVPPRKTDKIKIMGGPHRGATGKLIGVDGTDGIVKVDVSLDVKILDMAILAKLAQP
****IDKGSELQIRSVIALDHLKNYIYIEADKEAHVKEACKGLRNIYSQKVMLVPIREMTDVLAVESKAIDLSRDTWVRMKIGNYKGDLAKVVDVDNVRQRVTVKLIPRIDLQAL**************FVPPPRFMNVDEARELHIRVERRRDPMTGDYFENIGGMLFKDGFLYKTVSMKSISAQNIQPTFDELEKFRTPGENGESDIASLSTLFANRKKGHFMKGDAVIVIKGDLKNLKGWVEKVDEENVHIRPEMKGLPKTLAVNSKELCKYFEPGNHVKVVSGTQAGATGMVLKVEQHVLIILSDTTKEDIRVFADDVVESSEVTTGITKIGDYELRDLVLLDNNSFGVIIRVESEAFQVLKGVPDRPEVALVKLREIKCKLEKKSNVQDRNKNTVAVKDVVRIVEGPCKGKQGPVEHIYRGILFIHDRHHLEHAGFICAKSSSCVVVGGS************************************************DALVGTTVKVRLGPYKGYRGRVVDVKGQSVRVELESQMKVVTVDRSMISDN******************************YM*****AGA********TPMRDRAWNPYTPMS********GNPGSWGTSPQYQPGSPPSRAYEAPTPGSGWASTPGGNYSDAGTPRDSSSTYVNAPSPYLPSTPGGQPMTPNSASYLPGTPGGQPMTPGTGGLDAMSPVIGADNEGPWFMPDILVRRSGEESVVGVIREVLPDGSCRVVLGSSGNGDTITALPNEIEIVPPRKTDKIKIMGGPHRGATGKLIGVDGTDGIVKVDVSLDVKILDMAILAKLAQP
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MQKCIDKGSELQIRSVIALDHLKNYIYIEADKEAHVKEACKGLRNIYSQKVMLVPIREMTDVLAVESKAIDLSRDTWVRMKIGNYKGDLAKVVDVDNVRQRVTVKLIPRIDLQALANKLEGREVAKKKPFVPPPRFMNVDEARELHIRVERRRDPMTGDYFENIGGMLFKDGFLYKTVSMKSISAQNIQPTFDELEKFRTPGENGESDIASLSTLFANRKKGHFMKGDAVIVIKGDLKNLKGWVEKVDEENVHIRPEMKGLPKTLAVNSKELCKYFEPGNHVKVVSGTQAGATGMVLKVEQHVLIILSDTTKEDIRVFADDVVESSEVTTGITKIGDYELRDLVLLDNNSFGVIIRVESEAFQVLKGVPDRPEVALVKLREIKCKLEKKSNVQDRNKNTVAVKDVVRIVEGPCKGKQGPVEHIYRGILFIHDRHHLEHAGFICAKSSSCVVVGGSRANGDRNGDAYSRFNSLRTPPRIPQSPGRYSRGGPPAGGRNRGGRGGHDALVGTTVKVRLGPYKGYRGRVVDVKGQSVRVELESQMKVVTVDRSMISDNVVVSTPYRDTPRYGMGSETPMHPSRTPLHPYMTPMRDAGATPIHDGMRTPMRDRAWNPYTPMSPPRDNWEDGNPGSWGTSPQYQPGSPPSRAYEAPTPGSGWASTPGGNYSDAGTPRDSSSTYVNAPSPYLPSTPGGQPMTPNSASYLPGTPGGQPMTPGTGGLDAMSPVIGADNEGPWFMPDILVRRSGEESVVGVIREVLPDGSCRVVLGSSGNGDTITALPNEIEIVPPRKTDKIKIMGGPHRGATGKLIGVDGTDGIVKVDVSLDVKILDMAILAKLAQP
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query838 2.2.26 [Sep-21-2011]
Q9STN31041 Putative transcription el yes no 0.991 0.798 0.795 0.0
O80770989 Putative transcription el no no 0.937 0.794 0.666 0.0
Q5ZI081079 Transcription elongation yes no 0.961 0.746 0.343 1e-116
O552011082 Transcription elongation yes no 0.960 0.743 0.330 1e-116
O002671087 Transcription elongation yes no 0.953 0.735 0.327 1e-115
Q5R4051083 Transcription elongation yes no 0.953 0.737 0.327 1e-114
Q9DDT51084 Transcription elongation yes no 0.964 0.745 0.332 1e-113
Q9V4601078 Transcription elongation yes no 0.933 0.725 0.316 9e-93
Q21338 1208 Transcription elongation yes no 0.799 0.554 0.309 6e-75
Q4PIC41057 Transcription elongation N/A no 0.620 0.491 0.309 9e-66
>sp|Q9STN3|SPT51_ARATH Putative transcription elongation factor SPT5 homolog 1 OS=Arabidopsis thaliana GN=At4g08350 PE=1 SV=2 Back     alignment and function desciption
 Score = 1355 bits (3506), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 674/847 (79%), Positives = 751/847 (88%), Gaps = 16/847 (1%)

Query: 1    MQKCIDKGSELQIRSVIALDHLKNYIYIEADKEAHVKEACKGLRNIYS-QKVMLVPIREM 59
            MQK ID+G++LQIRSV+ALDHLKN+IY+EADKEAHVKEA KG+RNIY+ QK++LVPIREM
Sbjct: 202  MQKFIDRGADLQIRSVVALDHLKNFIYVEADKEAHVKEAIKGMRNIYANQKILLVPIREM 261

Query: 60   TDVLAVESKAIDLSRDTWVRMKIGNYKGDLAKVVDVDNVRQRVTVKLIPRIDLQALANKL 119
            TDVL+VESKAIDLSRDTWVRMKIG YKGDLAKVVDVDNVRQRVTVKLIPRIDLQALA+KL
Sbjct: 262  TDVLSVESKAIDLSRDTWVRMKIGTYKGDLAKVVDVDNVRQRVTVKLIPRIDLQALASKL 321

Query: 120  EGREVAKKKPFVPPPRFMNVDEARELHIRVERRRDPMTGDYFENIGGMLFKDGFLYKTVS 179
            +GREV+KKK FVPPPRFMN+DEARELHIRVERRRD MTGDYFENIGGMLFKDGF YK VS
Sbjct: 322  DGREVSKKKAFVPPPRFMNIDEARELHIRVERRRDHMTGDYFENIGGMLFKDGFHYKQVS 381

Query: 180  MKSISAQNIQPTFDELEKFRTPGENGESDIASLSTLFANRKKGHFMKGDAVIVIKGDLKN 239
            +KSI+ QN+ PTFDELEKF  P ENGE D   LSTLFANRKKGHFMKGDAVIVIKGDLKN
Sbjct: 382  LKSITVQNVTPTFDELEKFNKPSENGEGDFGGLSTLFANRKKGHFMKGDAVIVIKGDLKN 441

Query: 240  LKGWVEKVDEENVHIRPEMKGLPKTLAVNSKELCKYFEPGNHVKVVSGTQAGATGMVLKV 299
            LKGWVEKVDEENV IR E+KGLP  LAVN +ELCKYFEPGNHVKVVSGT  GATGMV+KV
Sbjct: 442  LKGWVEKVDEENVLIRSEVKGLPDPLAVNERELCKYFEPGNHVKVVSGTHEGATGMVVKV 501

Query: 300  EQHVLIILSDTTKEDIRVFADDVVESSEVTTGITKIGDYELRDLVLLDNNSFGVIIRVES 359
            +QHVLIILSDTTKE +RVFAD VVESSEVTTG+TKIGDYEL DLVLLDN SFGVIIR+E+
Sbjct: 502  DQHVLIILSDTTKEHVRVFADHVVESSEVTTGVTKIGDYELHDLVLLDNLSFGVIIRLEN 561

Query: 360  EAFQVLKGVPDRPEVALVKLREIKCKLEKKSNVQDRNKNTVAVKDVVRIVEGPCKGKQGP 419
            EAFQVLKGVPDRPEVALVKLREIKCKLEKK NVQDR KN +AVKD VR++EGP KGKQGP
Sbjct: 562  EAFQVLKGVPDRPEVALVKLREIKCKLEKKINVQDRYKNVIAVKDDVRVIEGPSKGKQGP 621

Query: 420  VEHIYRGILFIHDRHHLEHAGFICAKSSSCVVVGGSRANGDRN-GDAYSRFNSLRTPPRI 478
            V+HIY+G+LFI+DRHHLEHAGFICAK +SC+VVGGSR+  +RN GD+ SR+ + + P  +
Sbjct: 622  VKHIYKGVLFIYDRHHLEHAGFICAKCTSCIVVGGSRSGANRNGGDSLSRYGNFKAPAPV 681

Query: 479  PQSPGRYSRGGPPAGGRN-----RGGRGGHDALVGTTVKVRLGPYKGYRGRVVDVKGQSV 533
            P SPGR+ RG       +      G   G D+L+GTTVK+RLGP+KGYRG VV+VKG SV
Sbjct: 682  PSSPGRFQRGRGGGYNNSGGRHGGGRGRGDDSLLGTTVKIRLGPFKGYRGPVVEVKGNSV 741

Query: 534  RVELESQMKVVTVDRSMISDNVVVSTPYRDTPRYGMGSETPMHPSRTPLHPYMTPMRDAG 593
            RVELE  MK+VTVDR  ISDN V +TP+RDT RY MGSETPMHPSRTPLHPYMTPMRD+G
Sbjct: 742  RVELE--MKIVTVDRGAISDN-VATTPFRDTSRYSMGSETPMHPSRTPLHPYMTPMRDSG 798

Query: 594  ATPIHDGMRTPMRDRAWNPYTPMSPPRDNWEDGNPGSWGTSPQYQPGSPPSRAYEAPTPG 653
            ATPIHDGMRTPMRDRAWNPYTPMSPPRDNWEDGNPGSWGTSPQYQPGSPPSRAYEAPTPG
Sbjct: 799  ATPIHDGMRTPMRDRAWNPYTPMSPPRDNWEDGNPGSWGTSPQYQPGSPPSRAYEAPTPG 858

Query: 654  SGWASTPGGNYSDAGTPRDSSSTYVNAPSPYLPSTPGGQPMTPNSASYLPGTPGGQPMTP 713
            SGWASTPGG+YSDAGTPRD  S Y NAPSPYLPSTP GQPMTP+SASYLPGTPGGQPMTP
Sbjct: 859  SGWASTPGGSYSDAGTPRDHGSAYANAPSPYLPSTP-GQPMTPSSASYLPGTPGGQPMTP 917

Query: 714  GTGGLDAMSPVIGADNEGPWFMPDILV--RRSGEESVVGVIREVLPDGSCRVVLGSSGNG 771
            GT GLD MSPVIG D E  WFMPDILV   ++GE++ VGVIR+V  DG+C+V LGSSG G
Sbjct: 918  GT-GLDVMSPVIGGDAEA-WFMPDILVDIHKAGEDTDVGVIRDV-SDGTCKVSLGSSGEG 974

Query: 772  DTITALPNEIEIVPPRKTDKIKIMGGPHRGATGKLIGVDGTDGIVKVDVSLDVKILDMAI 831
            DTI ALP+E+EI+PPRK+D++KI+GG +RG+TGKLIG+DG+DGIVK+D +LDVKILD+A+
Sbjct: 975  DTIMALPSELEIIPPRKSDRVKIVGGQYRGSTGKLIGIDGSDGIVKIDDNLDVKILDLAL 1034

Query: 832  LAKLAQP 838
            LAK  QP
Sbjct: 1035 LAKFVQP 1041
May regulate transcription elongation by RNA polymerase II. May enhance transcriptional pausing at sites proximal to the promoter, which may in turn facilitate the assembly of an elongation competent RNA polymerase II complex.
Arabidopsis thaliana (taxid: 3702)
>sp|O80770|SPT52_ARATH Putative transcription elongation factor SPT5 homolog 2 OS=Arabidopsis thaliana GN=At2g34210 PE=2 SV=2 Back     alignment and function description
>sp|Q5ZI08|SPT5H_CHICK Transcription elongation factor SPT5 OS=Gallus gallus GN=SUPT5H PE=2 SV=1 Back     alignment and function description
>sp|O55201|SPT5H_MOUSE Transcription elongation factor SPT5 OS=Mus musculus GN=Supt5h PE=1 SV=1 Back     alignment and function description
>sp|O00267|SPT5H_HUMAN Transcription elongation factor SPT5 OS=Homo sapiens GN=SUPT5H PE=1 SV=1 Back     alignment and function description
>sp|Q5R405|SPT5H_PONAB Transcription elongation factor SPT5 OS=Pongo abelii GN=SUPT5H PE=2 SV=1 Back     alignment and function description
>sp|Q9DDT5|SPT5H_DANRE Transcription elongation factor SPT5 OS=Danio rerio GN=supt5h PE=1 SV=1 Back     alignment and function description
>sp|Q9V460|SPT5H_DROME Transcription elongation factor SPT5 OS=Drosophila melanogaster GN=Spt5 PE=1 SV=1 Back     alignment and function description
>sp|Q21338|SPT5H_CAEEL Transcription elongation factor SPT5 OS=Caenorhabditis elegans GN=spt-5 PE=3 SV=3 Back     alignment and function description
>sp|Q4PIC4|SPT5_USTMA Transcription elongation factor SPT5 OS=Ustilago maydis (strain 521 / FGSC 9021) GN=SPT5 PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query838
255570428 1045 suppressor of ty, putative [Ricinus comm 0.998 0.800 0.875 0.0
449506979849 PREDICTED: putative transcription elonga 1.0 0.987 0.853 0.0
449462178 1044 PREDICTED: putative transcription elonga 1.0 0.802 0.848 0.0
224105299 1042 global transcription factor group [Popul 0.983 0.790 0.852 0.0
356509328 1050 PREDICTED: putative transcription elonga 0.995 0.794 0.853 0.0
356515975 1039 PREDICTED: putative transcription elonga 0.995 0.802 0.853 0.0
359492305 1034 PREDICTED: putative transcription elonga 0.997 0.808 0.842 0.0
359492307 1044 PREDICTED: putative transcription elonga 0.997 0.800 0.830 0.0
357463691 1040 Global transcription factor group [Medic 0.992 0.8 0.843 0.0
147838939 1107 hypothetical protein VITISV_043874 [Viti 0.972 0.736 0.809 0.0
>gi|255570428|ref|XP_002526173.1| suppressor of ty, putative [Ricinus communis] gi|223534550|gb|EEF36249.1| suppressor of ty, putative [Ricinus communis] Back     alignment and taxonomy information
 Score = 1511 bits (3912), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 739/844 (87%), Positives = 797/844 (94%), Gaps = 7/844 (0%)

Query: 1    MQKCIDKGSELQIRSVIALDHLKNYIYIEADKEAHVKEACKGLRNIYSQKVMLVPIREMT 60
            MQK IDKGSELQIRS IALDHLKNYIYIEADKEAHV+EACKGLRNIY+QK+MLVPI+EMT
Sbjct: 203  MQKYIDKGSELQIRSAIALDHLKNYIYIEADKEAHVREACKGLRNIYAQKIMLVPIKEMT 262

Query: 61   DVLAVESKAIDLSRDTWVRMKIGNYKGDLAKVVDVDNVRQRVTVKLIPRIDLQALANKLE 120
            DVL+VESKAIDLSRDTWVRMKIG YKGDLAKVVDVDNVRQRVTVKLIPRIDLQALANKLE
Sbjct: 263  DVLSVESKAIDLSRDTWVRMKIGTYKGDLAKVVDVDNVRQRVTVKLIPRIDLQALANKLE 322

Query: 121  GREVAKKKPFVPPPRFMNVDEARELHIRVERRRDPMTGDYFENIGGMLFKDGFLYKTVSM 180
            GREVAKKK FVPPPRFMNVDEARELHIRVERRRDPM+GDYFENIGGMLFKDGFLYKTVSM
Sbjct: 323  GREVAKKKAFVPPPRFMNVDEARELHIRVERRRDPMSGDYFENIGGMLFKDGFLYKTVSM 382

Query: 181  KSISAQNIQPTFDELEKFRTPGENGESDIASLSTLFANRKKGHFMKGDAVIVIKGDLKNL 240
            KSIS QNI+PTFDELEKFR PGEN + DI  LSTLFANRKKGHF+KGDAVI++KGDLKNL
Sbjct: 383  KSISVQNIKPTFDELEKFRKPGEN-DGDIVGLSTLFANRKKGHFVKGDAVIIVKGDLKNL 441

Query: 241  KGWVEKVDEENVHIRPEMKGLPKTLAVNSKELCKYFEPGNHVKVVSGTQAGATGMVLKVE 300
            KGWVEKVDEENVHI+PEMK LP+T+AVN KELCKYFEPGNHVKVVSGTQ GATGMV+KVE
Sbjct: 442  KGWVEKVDEENVHIKPEMKDLPRTIAVNEKELCKYFEPGNHVKVVSGTQEGATGMVVKVE 501

Query: 301  QHVLIILSDTTKEDIRVFADDVVESSEVTTGITKIGDYELRDLVLLDNNSFGVIIRVESE 360
            QHVLIILSDTTKE IRVFADDVVESSEVTTG+TKIGDYEL DLVLLDN SFGVIIRVESE
Sbjct: 502  QHVLIILSDTTKEHIRVFADDVVESSEVTTGVTKIGDYELHDLVLLDNMSFGVIIRVESE 561

Query: 361  AFQVLKGVPDRPEVALVKLREIKCKLEKKSNVQDRNKNTVAVKDVVRIVEGPCKGKQGPV 420
            AFQVLKGVP+RPEVALV+LREIKCK+EKK NVQDR KNT+AVKDVVRI++GPCKGKQGPV
Sbjct: 562  AFQVLKGVPERPEVALVRLREIKCKIEKKFNVQDRYKNTIAVKDVVRIIDGPCKGKQGPV 621

Query: 421  EHIYRGILFIHDRHHLEHAGFICAKSSSCVVVGGSRANGDRNGDAYSRFNSLRTPPRIPQ 480
            EHIY+G+LFI+DRHHLEHAGFICAKS SC+VVGG+RANGDRNGD+YSRF+S +TPPR+PQ
Sbjct: 622  EHIYKGVLFIYDRHHLEHAGFICAKSHSCIVVGGTRANGDRNGDSYSRFSSFKTPPRVPQ 681

Query: 481  SPGRYSRGGPP--AGGRNRGGRGGHDALVGTTVKVRLGPYKGYRGRVVDVKGQSVRVELE 538
            SP R+ RGGPP  +GGRNRGGRGGHDALVGTTVK+RLGP+KGYRGRVV++KG SVRVELE
Sbjct: 682  SPRRFPRGGPPFESGGRNRGGRGGHDALVGTTVKIRLGPFKGYRGRVVEIKGPSVRVELE 741

Query: 539  SQMKVV--TVDRSMISDNVVVSTPYRDTPRYGMGSETPMHPSRTPLHPYMTPMRDAGATP 596
            SQMKV+    DR+ ISDNVV+STP+RD+ RYGMGSETPMHPSRTPLHPYMTPMRDAGATP
Sbjct: 742  SQMKVILGKFDRNNISDNVVISTPHRDSSRYGMGSETPMHPSRTPLHPYMTPMRDAGATP 801

Query: 597  IHDGMRTPMRDRAWNPYTPMSPPRDNWEDGNPGSWGTSPQYQPGSPPSRAYEAPTPGSGW 656
            IHDGMRTPMRDRAWNPY PMSPPRDNWEDGNP SWGTSP YQPGSPPSRAYEAPTPGSGW
Sbjct: 802  IHDGMRTPMRDRAWNPYAPMSPPRDNWEDGNPASWGTSPHYQPGSPPSRAYEAPTPGSGW 861

Query: 657  ASTPGGNYSDAGTPRDSSSTYVNAPSPYLPSTPGGQPMTPNSASYLPGTPGGQPMTPGTG 716
            A+TPGG+YSDAGTPRDSSS Y NAPSPYLPSTPGGQPMTP+SA+YLPGTPGGQPMTPGTG
Sbjct: 862  ANTPGGSYSDAGTPRDSSSAYANAPSPYLPSTPGGQPMTPSSAAYLPGTPGGQPMTPGTG 921

Query: 717  GLDAMSPVIGADNEGPWFMPDIL--VRRSGEESVVGVIREVLPDGSCRVVLGSSGNGDTI 774
            GLD MSPVIG DNEGPW+MPDIL  VR++ ++S +GVIR+VL DGSCRVVLG++GNG+TI
Sbjct: 922  GLDVMSPVIGGDNEGPWYMPDILVNVRKAADDSAIGVIRDVLADGSCRVVLGANGNGETI 981

Query: 775  TALPNEIEIVPPRKTDKIKIMGGPHRGATGKLIGVDGTDGIVKVDVSLDVKILDMAILAK 834
            TALPNEIEIV PRK+DKIKIMGG HRGATGKLIGVDGTDGIVKVD +LDVKILDM ILAK
Sbjct: 982  TALPNEIEIVVPRKSDKIKIMGGAHRGATGKLIGVDGTDGIVKVDDTLDVKILDMVILAK 1041

Query: 835  LAQP 838
            LAQP
Sbjct: 1042 LAQP 1045

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|449506979|ref|XP_004162900.1| PREDICTED: putative transcription elongation factor SPT5 homolog 1-like, partial [Cucumis sativus] Back     alignment and taxonomy information
>gi|449462178|ref|XP_004148818.1| PREDICTED: putative transcription elongation factor SPT5 homolog 1-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|224105299|ref|XP_002313759.1| global transcription factor group [Populus trichocarpa] gi|222850167|gb|EEE87714.1| global transcription factor group [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356509328|ref|XP_003523402.1| PREDICTED: putative transcription elongation factor SPT5 homolog 1-like [Glycine max] Back     alignment and taxonomy information
>gi|356515975|ref|XP_003526672.1| PREDICTED: putative transcription elongation factor SPT5 homolog 1-like [Glycine max] Back     alignment and taxonomy information
>gi|359492305|ref|XP_002265283.2| PREDICTED: putative transcription elongation factor SPT5 homolog 1-like isoform 1 [Vitis vinifera] gi|302142757|emb|CBI19960.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|359492307|ref|XP_003634397.1| PREDICTED: putative transcription elongation factor SPT5 homolog 1-like isoform 2 [Vitis vinifera] Back     alignment and taxonomy information
>gi|357463691|ref|XP_003602127.1| Global transcription factor group [Medicago truncatula] gi|355491175|gb|AES72378.1| Global transcription factor group [Medicago truncatula] Back     alignment and taxonomy information
>gi|147838939|emb|CAN68098.1| hypothetical protein VITISV_043874 [Vitis vinifera] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query838
TAIR|locus:2040954989 AT2G34210 [Arabidopsis thalian 0.792 0.671 0.669 3.5e-242
UNIPROTKB|Q5ZI081079 SUPT5H "Transcription elongati 0.801 0.622 0.346 2.4e-99
MGI|MGI:12024001082 Supt5 "suppressor of Ty 5" [Mu 0.800 0.620 0.341 2.8e-98
UNIPROTKB|E9PTB21083 E9PTB2 "Uncharacterized protei 0.800 0.619 0.341 2.8e-98
UNIPROTKB|F2Z3T6888 F2Z3T6 "Uncharacterized protei 0.800 0.755 0.341 2.8e-98
ZFIN|ZDB-GENE-001207-11084 supt5h "suppressor of Ty 5 hom 0.804 0.621 0.341 1.1e-96
UNIPROTKB|Q5R4051083 SUPT5H "Transcription elongati 0.797 0.616 0.337 8.7e-95
UNIPROTKB|E2RLS81087 SUPT5H "Uncharacterized protei 0.798 0.615 0.335 1.1e-94
UNIPROTKB|O002671087 SUPT5H "Transcription elongati 0.798 0.615 0.335 1.1e-94
UNIPROTKB|E1BC981083 SUPT5H "Uncharacterized protei 0.798 0.617 0.335 1.4e-94
TAIR|locus:2040954 AT2G34210 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 2334 (826.7 bits), Expect = 3.5e-242, P = 3.5e-242
 Identities = 471/703 (66%), Positives = 541/703 (76%)

Query:     1 MQKCIDKGSELQIRSVIALDHLKNYIYIEADKEAHVKEACKGLRNIYS-QKVMLVPIREM 59
             MQK +D+GSE +IRS IALDHL+NY+YIEAD EAHVKEA KG+RNIY+ QK++LVPI+EM
Sbjct:   189 MQKIVDRGSEFKIRSAIALDHLQNYVYIEADMEAHVKEAIKGMRNIYANQKILLVPIKEM 248

Query:    60 TDVLAVESKAIDLSRDTWVRMKIGNYKGDLAKVVDVDNVRQRVTVKLIPRIDLQALANKL 119
             T VL+VESKAIDLSRD+WVRMK+G YKGDLA+VVDVDNVR+RVTVKLIPRIDLQALANKL
Sbjct:   249 TAVLSVESKAIDLSRDSWVRMKLGIYKGDLAQVVDVDNVRKRVTVKLIPRIDLQALANKL 308

Query:   120 EGREVAKKKPFVPPPRFMNVDEARELHIRVERRRDPMTGDYFENIGGMLFKDGFLYKTVS 179
             EG E  KKK F PPPRFMN+DEARELHIRVE RRDPMTGDYFENIGGMLFKDGFLYK VS
Sbjct:   309 EGTENVKKKAFAPPPRFMNIDEARELHIRVEHRRDPMTGDYFENIGGMLFKDGFLYKKVS 368

Query:   180 MKSISAQNIQPTFDELEKFRTPGENGESDIASLSTLFANRKKGHFMKGDAVIVIKGDLKN 239
              KSI+AQN+ PTFDELE+F+ P ENGE D    STLFANRKKGHFMKGDAVIVIKGDLKN
Sbjct:   369 TKSIAAQNVTPTFDELERFKRPNENGEIDFVDESTLFANRKKGHFMKGDAVIVIKGDLKN 428

Query:   240 LKGWVEKVDEENVHIRPEMKGLPKTLAVNSKELCKYFEPGNHVKVVSGTQAGATGMVLKV 299
             LKGW+EKVDEENV IR EMK LP  +AVN +ELCKYFEPGN VKVVSG   G TGM++KV
Sbjct:   429 LKGWIEKVDEENVLIRSEMKDLPNPIAVNGRELCKYFEPGNFVKVVSGIHEGGTGMIVKV 488

Query:   300 EQHVLIILSDTTKEDIRVFADDVVESSEVTTGITKIGDYELRDLVLLDNNSFGVIIRVES 359
             +QH+LIILSDTTKE I VFAD V +S+EVT G+TKIGDYEL DLV+L + SFGVI++++S
Sbjct:   489 DQHMLIILSDTTKEHICVFADHVAKSAEVTKGVTKIGDYELHDLVILSDFSFGVILKLDS 548

Query:   360 EAFQVLKGVPDRPEVALVKLREIKCKLEKKSNVQDRNKNTVAVKDVVRIVEGPCKGKQGP 419
             EA Q+LKGVPD  EV++VK  EIK K+ KK NVQDR KN VAVKDVVR++EGP KGKQGP
Sbjct:   549 EAIQILKGVPDSSEVSIVKASEIKYKIWKKINVQDRYKNVVAVKDVVRVIEGPSKGKQGP 608

Query:   420 VEHIYRGILFIHDRHHLEHAGFICAKSSSCVVVGGSRANGDRNGDAYSRFNSLRTPPRIP 479
             V  IY+G+LFIHDRH+LEH GFIC + SSCV+ GG+                 +TP  +P
Sbjct:   609 VVQIYKGVLFIHDRHNLEHTGFICTRCSSCVLAGGN----------------FKTPALVP 652

Query:   480 QSPGRYSXXX------XXXXXXXXXXXXXHDALVGTTVKVRLGPYKGYRGRVVDVKGQSV 533
              SP R+                        D LVGT VK+RLGP+KGY GR+V+VK + V
Sbjct:   653 PSPRRFQRADMGYNPGAGGRHQGGRGRRGDDHLVGTYVKIRLGPFKGYSGRLVEVKDKLV 712

Query:   534 RVELESQMKVVTVDRSMISD---NVVVSTPYRDTPRYGMGSETPMHPSRTPLHPYMTPMR 590
             RVELE+  K+VTV+R  ISD   NVV       TP+Y MGS+TPMHPSRTPLHP MTPMR
Sbjct:   713 RVELEA--KIVTVERKAISDMTDNVVA------TPQYNMGSQTPMHPSRTPLHPCMTPMR 764

Query:   591 DAGATPIHDGMRTPMRDRAWNPYTPMSPPRDNWEDGNPGSWGTSPQYQPGSPPSRAYEAP 650
              +GATPIHDGMRTPMR RAWNPY PMSPPRDNWEDGNPGSWGTSP Y+  +P S    + 
Sbjct:   765 HSGATPIHDGMRTPMRGRAWNPYMPMSPPRDNWEDGNPGSWGTSP-YEAATPGSDWGSST 823

Query:   651 TPGSGW--ASTPGGNYSDAGTPRDSSST-YVNAPSPYLPSTPG 690
                S +  A TP  N ++A +P   SST Y+         TPG
Sbjct:   824 PGRSSYRDAGTPINN-ANAPSPMTPSSTSYLPTTPGGQAMTPG 865
GO:0003735 "structural constituent of ribosome" evidence=IEA
GO:0005622 "intracellular" evidence=IEA
GO:0005634 "nucleus" evidence=ISM
GO:0005840 "ribosome" evidence=IEA
GO:0006352 "DNA-dependent transcription, initiation" evidence=ISS
GO:0006357 "regulation of transcription from RNA polymerase II promoter" evidence=IEA
GO:0006412 "translation" evidence=IEA
GO:0032784 "regulation of DNA-dependent transcription, elongation" evidence=IEA
GO:0032968 "positive regulation of transcription elongation from RNA polymerase II promoter" evidence=IEA
GO:0000394 "RNA splicing, via endonucleolytic cleavage and ligation" evidence=RCA
GO:0006366 "transcription from RNA polymerase II promoter" evidence=RCA
UNIPROTKB|Q5ZI08 SUPT5H "Transcription elongation factor SPT5" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
MGI|MGI:1202400 Supt5 "suppressor of Ty 5" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|E9PTB2 E9PTB2 "Uncharacterized protein" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|F2Z3T6 F2Z3T6 "Uncharacterized protein" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-001207-1 supt5h "suppressor of Ty 5 homolog (S. cerevisiae)" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|Q5R405 SUPT5H "Transcription elongation factor SPT5" [Pongo abelii (taxid:9601)] Back     alignment and assigned GO terms
UNIPROTKB|E2RLS8 SUPT5H "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|O00267 SUPT5H "Transcription elongation factor SPT5" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|E1BC98 SUPT5H "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9STN3SPT51_ARATHNo assigned EC number0.79570.99160.7982yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query838
COG5164607 COG5164, SPT5, Transcription elongation factor [Tr 5e-40
cd0988886 cd09888, NGN_Euk, Eukaryotic N-Utilization Substan 2e-26
cd0608658 cd06086, KOW_Spt5_6, KOW domain of Spt5, repeat 6 1e-20
cd0608552 cd06085, KOW_Spt5_5, KOW domain of Spt5, repeat 5 3e-19
cd0608351 cd06083, KOW_Spt5_3, KOW domain of Spt5, repeat 3 1e-18
pfam0343984 pfam03439, Spt5-NGN, Early transcription elongatio 1e-18
cd0608443 cd06084, KOW_Spt5_4, KOW domain of Spt5, repeat 4 2e-16
cd0608138 cd06081, KOW_Spt5_1, KOW domain of Spt5, repeat 1 7e-16
cd0608251 cd06082, KOW_Spt5_2, KOW domain of Spt5, repeat 2 7e-15
smart01104121 smart01104, CTD, Spt5 C-terminal nonapeptide repea 7e-10
PRK08559153 PRK08559, nusG, transcription antitermination prot 9e-07
TIGR00405145 TIGR00405, L26e_arch, ribosomal protein L24p/L26e, 1e-05
smart00738106 smart00738, NGN, In Spt5p, this domain may confer 3e-04
pfam0046732 pfam00467, KOW, KOW motif 0.003
PHA03247 3151 PHA03247, PHA03247, large tegument protein UL36; P 0.003
cd0988782 cd09887, NGN_Arch, Archaeal N-Utilization Substanc 0.004
>gnl|CDD|227493 COG5164, SPT5, Transcription elongation factor [Transcription] Back     alignment and domain information 
 Score =  156 bits (396), Expect = 5e-40
 Identities = 132/632 (20%), Positives = 203/632 (32%), Gaps = 86/632 (13%)

Query: 132 PPPRFMNVDEARELHIRVERRRDPMTGDYFENIGGMLFKDGFLYKTVSMKSISAQNIQPT 191
            PP+  N   A  L      +RD     Y        + DGFL K   +         PT
Sbjct: 6   APPQLFNPTMALRLDQANLYKRDDRHFTY----KNEDYIDGFLVKVKRISERETLMRIPT 61

Query: 192 FDELEKFRTPGENGESDIASLSTLFANRKKGH--FMKGDAVIVIKGDLKNLKGWVEKVDE 249
            DE   F       + D+ S    F   KK H  F  GDA+ V++G+ +   G V +  E
Sbjct: 62  NDEKNVFSI--ICKDLDLYSYVESF---KKQHAVFQPGDALEVLRGEQRGRVGVVPRQKE 116

Query: 250 ENVHIRPEMKGLPKTLAVNSKELCKYFEPGNHVKVVSGTQAGATGMVLKVEQHVLIILSD 309
               +          L      L K F  G+ VKV+ G +    G V +++   +   S+
Sbjct: 117 MIETMTYHF-EQR--LCGPWGRLRKGFYKGDLVKVIEGGEMVDIGTVPRIDGEKVTFNSE 173

Query: 310 TTKEDIRVFADDVVESSEVTTGITKIGDYELRDLVLLDNNSFGVIIRVESEAFQVLKGVP 369
             K +  + +  + +S + T   +    Y+L D V L       I  ++ +  +V+    
Sbjct: 174 NFKSESTIKSRGLSKSIDTTATSS---IYKLHDYVDLFLEKVACINSIDFDVEKVID--- 227

Query: 370 DRPEVALVKLREIKCKLEKKSNVQDRNKNTVAVKDVVR-------IVEGPCKGKQGPVEH 422
                 L ++    C +     V+      + +    R       +VE      +G    
Sbjct: 228 -----ELGEVHTA-CPISIGDKVRVTRGELIGMDGNGREISIGDAVVESRGGKFEGQSLG 281

Query: 423 IYRGILFIHDRHHLEHAGFICAKSSSCVVVGGSRANGDRNGDAYSRFNSLRTPPRIPQSP 482
           I +   F       E+ G       +  +V  ++   +       + N    PP      
Sbjct: 282 IVKHFDFGETVSIKENNGVFVKIEGNVCIVA-TKDFTESLKVDLDKMN----PPVT---- 332

Query: 483 GRYSRGGPPAGGRNRGGRGGHDALVGTTVKVRLGPYKGYRGRVVDVKGQSVRVELESQMK 542
                   P          G D  +G TV++R G YKG+ G V DV     RVEL S  K
Sbjct: 333 ---VNLQNPKTNELERKIVGRDPAIGKTVRIRCGEYKGHLGVVKDVDRNIARVELHSNNK 389

Query: 543 VVTVDRSMIS------DNVVVSTPYRDTPRYGMGSETPMHPSRTPLHPYMTPMRDAGATP 596
            VT+++S ++      + +                 +    S+TP   Y T    AGA  
Sbjct: 390 FVTIEKSRLAYLGREGEGITYDELVNRRGLSKPLRYSEAIGSKTP--NYATGGIAAGAAA 447

Query: 597 I---HDGMRTPMRDRAWN--PYTP-MSPPRDNWEDGNP-----------GSWGTSPQYQP 639
                 G RTP     W   P TP ++ P  +W D              G       Y+ 
Sbjct: 448 TSSGLSGYRTP----GWKDGPKTPALNDPGIDWGDEKDNWYKGSLIHALGKGLALEDYRD 503

Query: 640 GSPPSRAYEAPTPGSG-WASTPGGN-------YSDAGTPRDSSSTYVNAPSPYLPSTPGG 691
           G   +      T  S      P  N           GT    +    +     + ST G 
Sbjct: 504 GLFMTAWKGQATSASEISFVQPRWNNLVCVLDGEKKGTCGILNGINGDWGGTVIRSTKGS 563

Query: 692 Q---PMTPNSASYLPGTPGGQPMTPGTGGLDA 720
               PM  NS     G           G   A
Sbjct: 564 VVHWPMNDNSKKIYDGGASAWG-NQDDGNRSA 594

Length = 607
>gnl|CDD|193577 cd09888, NGN_Euk, Eukaryotic N-Utilization Substance G (NusG) N-terminal (NGN) domain, including plant KTF1 (KOW domain-containing Transcription Factor 1) Back     alignment and domain information
>gnl|CDD|240510 cd06086, KOW_Spt5_6, KOW domain of Spt5, repeat 6 Back     alignment and domain information
>gnl|CDD|240509 cd06085, KOW_Spt5_5, KOW domain of Spt5, repeat 5 Back     alignment and domain information
>gnl|CDD|240507 cd06083, KOW_Spt5_3, KOW domain of Spt5, repeat 3 Back     alignment and domain information
>gnl|CDD|217558 pfam03439, Spt5-NGN, Early transcription elongation factor of RNA pol II, NGN section Back     alignment and domain information
>gnl|CDD|240508 cd06084, KOW_Spt5_4, KOW domain of Spt5, repeat 4 Back     alignment and domain information
>gnl|CDD|240505 cd06081, KOW_Spt5_1, KOW domain of Spt5, repeat 1 Back     alignment and domain information
>gnl|CDD|240506 cd06082, KOW_Spt5_2, KOW domain of Spt5, repeat 2 Back     alignment and domain information
>gnl|CDD|215026 smart01104, CTD, Spt5 C-terminal nonapeptide repeat binding Spt4 Back     alignment and domain information
>gnl|CDD|181467 PRK08559, nusG, transcription antitermination protein NusG; Validated Back     alignment and domain information
>gnl|CDD|129499 TIGR00405, L26e_arch, ribosomal protein L24p/L26e, archaeal Back     alignment and domain information
>gnl|CDD|197850 smart00738, NGN, In Spt5p, this domain may confer affinity for Spt4p Back     alignment and domain information
>gnl|CDD|144165 pfam00467, KOW, KOW motif Back     alignment and domain information
>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional Back     alignment and domain information
>gnl|CDD|193576 cd09887, NGN_Arch, Archaeal N-Utilization Substance G (NusG) N-terminal (NGN) domain Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 838
KOG19991024 consensus RNA polymerase II transcription elongati 100.0
COG5164607 SPT5 Transcription elongation factor [Transcriptio 100.0
KOG19991024 consensus RNA polymerase II transcription elongati 100.0
COG5164607 SPT5 Transcription elongation factor [Transcriptio 99.82
PRK08559153 nusG transcription antitermination protein NusG; V 99.66
TIGR00405145 L26e_arch ribosomal protein L24p/L26e, archaeal. T 99.57
PF0343984 Spt5-NGN: Early transcription elongation factor of 99.56
COG0250178 NusG Transcription antiterminator [Transcription] 99.11
PF12815123 CTD: Spt5 C-terminal nonapeptide repeat binding Sp 98.98
PRK05609181 nusG transcription antitermination protein NusG; V 98.65
TIGR01956258 NusG_myco NusG family protein. This model represen 98.55
TIGR00922172 nusG transcription termination/antitermination fac 98.44
KOG02601605 consensus RNA polymerase II, large subunit [Transc 98.24
KOG02601605 consensus RNA polymerase II, large subunit [Transc 98.2
PRK09014162 rfaH transcriptional activator RfaH; Provisional 98.0
PF12815123 CTD: Spt5 C-terminal nonapeptide repeat binding Sp 97.99
TIGR01955159 RfaH transcriptional activator RfaH. This model re 97.94
KOG2837309 consensus Protein containing a U1-type Zn-finger a 97.74
PF0046732 KOW: KOW motif; InterPro: IPR005824 Ribosomes are 97.73
PF0046732 KOW: KOW motif; InterPro: IPR005824 Ribosomes are 96.93
smart00738106 NGN In Spt5p, this domain may confer affinity for 96.69
KOG4315455 consensus G-patch nucleic acid binding protein [Ge 96.65
smart0073928 KOW KOW (Kyprides, Ouzounis, Woese) motif. Motif i 96.17
smart0073928 KOW KOW (Kyprides, Ouzounis, Woese) motif. Motif i 95.96
PRK01191120 rpl24p 50S ribosomal protein L24P; Validated 95.38
CHL0014183 rpl24 ribosomal protein L24; Validated 95.31
TIGR00405145 L26e_arch ribosomal protein L24p/L26e, archaeal. T 95.31
PRK1228176 rplX 50S ribosomal protein L24; Reviewed 94.77
PRK09014162 rfaH transcriptional activator RfaH; Provisional 94.46
PRK00004105 rplX 50S ribosomal protein L24; Reviewed 94.38
TIGR00922172 nusG transcription termination/antitermination fac 94.37
PRK1228176 rplX 50S ribosomal protein L24; Reviewed 94.06
TIGR01080114 rplX_A_E ribosomal protein L24p/L26e, archaeal/euk 94.02
COG0250178 NusG Transcription antiterminator [Transcription] 93.93
CHL0014183 rpl24 ribosomal protein L24; Validated 93.64
PRK00004105 rplX 50S ribosomal protein L24; Reviewed 93.55
TIGR01080114 rplX_A_E ribosomal protein L24p/L26e, archaeal/euk 93.46
PRK05609181 nusG transcription antitermination protein NusG; V 93.44
PRK08559153 nusG transcription antitermination protein NusG; V 93.11
PTZ00194143 60S ribosomal protein L26; Provisional 93.07
TIGR01955159 RfaH transcriptional activator RfaH. This model re 93.04
KOG1924 1102 consensus RhoA GTPase effector DIA/Diaphanous [Sig 92.83
KOG1708236 consensus Mitochondrial/chloroplast ribosomal prot 92.73
TIGR01079104 rplX_bact ribosomal protein L24, bacterial/organel 91.99
TIGR01956258 NusG_myco NusG family protein. This model represen 91.78
TIGR01079104 rplX_bact ribosomal protein L24, bacterial/organel 91.22
KOG1924 1102 consensus RhoA GTPase effector DIA/Diaphanous [Sig 91.14
PRK01191120 rpl24p 50S ribosomal protein L24P; Validated 90.94
PRK06763213 F0F1 ATP synthase subunit alpha; Validated 89.92
COG0198104 RplX Ribosomal protein L24 [Translation, ribosomal 89.65
PTZ00194143 60S ribosomal protein L26; Provisional 88.57
COG0198104 RplX Ribosomal protein L24 [Translation, ribosomal 87.69
PRK12269863 bifunctional cytidylate kinase/ribosomal protein S 86.45
cd0446757 S1_aIF5A S1_aIF5A: Archaeal translation Initiation 82.89
>KOG1999 consensus RNA polymerase II transcription elongation factor DSIF/SUPT5H/SPT5 [Transcription] Back     alignment and domain information 
Probab=100.00  E-value=7.3e-189  Score=1618.35  Aligned_cols=809  Identities=50%  Similarity=0.776  Sum_probs=709.7

Q ss_pred             Ccccccc---CCCccEEEEEecCCCceEEEEEecChHHHHHHHhcCcceeeeeeeeeChhhhhhccccccccccCCCCCE
Q 003213            1 MQKCIDK---GSELQIRSVIALDHLKNYIYIEADKEAHVKEACKGLRNIYSQKVMLVPIREMTDVLAVESKAIDLSRDTW   77 (838)
Q Consensus         1 m~K~i~~---~~~l~I~Sv~~~~~lkGyIyVEA~~~~~V~~ai~g~~~v~~~~~~~Vpi~Em~~~L~~~~~~~~l~~G~~   77 (838)
                      |||||++   +.||+|+|||++|||||||||||++|.||++||+||+|||.+++.||||+||++||+++|+.+.|++|+|
T Consensus       185 MrK~i~~~~t~~plqI~Sv~a~D~lkGyIYIEA~KqshV~~Ai~gv~niy~~~~~lVPikEM~dvLkV~K~~v~L~~gsw  264 (1024)
T KOG1999|consen  185 MRKFIELDKTDTPLQIKSVFAKDHLKGYIYIEADKQSHVKEAIEGVRNIYANRILLVPIKEMPDVLKVVKKVVQLSEGSW  264 (1024)
T ss_pred             HHHHHhhcccCCCceEEEEEeccccceeEEEEechhHHHHHHHhhhhhheeccEEEEehhHhhhhhhhhhhhhccCccce
Confidence            8999996   4899999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEecCcCCCceEEEEEEeCCCCEEEEEEeeccchhhhhhhccccccccCCCCCCCCCCCCHHHHHhccccEeeecCCCC
Q 003213           78 VRMKIGNYKGDLAKVVDVDNVRQRVTVKLIPRIDLQALANKLEGREVAKKKPFVPPPRFMNVDEARELHIRVERRRDPMT  157 (838)
Q Consensus        78 VRik~G~ykGDlaqV~~vd~~~~~V~vkliPRiD~~~~~~~~~g~~~~kkk~~RPp~rlF~~~e~~~~~~~v~~~r~~~~  157 (838)
                      ||||+|+||||||||++|++++++|+|||||||||+++..+++  ...++|++||++|||+..+++++.++++.+|+..+
T Consensus       265 VRiKrG~YKgDLAqVd~Vd~~~n~v~lKlIPRIDyq~~~~~~~--~~~~~ka~~p~~R~~~~~~~~~~~ir~~~~~~~~~  342 (1024)
T KOG1999|consen  265 VRIKRGKYKGDLAQVDDVDENRNRVRLKLIPRIDYQKLLGKLE--ETTDKKAFRPAPRRPNQKEFDEEAIRSEGRRDHSR  342 (1024)
T ss_pred             EEEeccccccceeeeeeecccCCEEEEEEeccccHHhhhcccc--ccchhhccCCcccCCCccccchhhhhhcccccccc
Confidence            9999999999999999999999999999999999999998887  33456778999999999999999999999999999


Q ss_pred             CccEEEeCCceeecceEEEEEeecceeecCCCCCHHhhhcccCCCCCCcchhhhhhhhhhccccc-ccCCCCEEEEecCc
Q 003213          158 GDYFENIGGMLFKDGFLYKTVSMKSISAQNIQPTFDELEKFRTPGENGESDIASLSTLFANRKKG-HFMKGDAVIVIKGD  236 (838)
Q Consensus       158 g~~~~~~~g~~y~dGfL~K~~~~~~l~~~~V~PTleEL~kF~~~~~~~~~dl~~ls~~~~~~~~~-~F~~GD~V~V~~Ge  236 (838)
                      |+||++++|++|+||||||.|+|++|++++|+|||+||+||++..+  +.||.++|+++.+++++ .|++||+|+||.||
T Consensus       343 Gd~l~~~gn~~~~dGFLyK~v~i~sI~t~gV~PT~dELekF~~~~e--~~Dl~~~st~~~~r~~~~~F~~GD~VeV~~Ge  420 (1024)
T KOG1999|consen  343 GDYLEFEGNELFKDGFLYKDVSISSIITDGVKPTLDELEKFNPSNE--EGDLEWVSTLKSNRKKKHLFSPGDAVEVIVGE  420 (1024)
T ss_pred             CceEEecCCceeccceeeeeeecceeeecCcccCHHHHHhhcCCCc--cccceeeeeeccccccccccCCCCeEEEeeee
Confidence            9999888888999999999999999999999999999999999877  66777777666666554 59999999999999


Q ss_pred             cCCceeEEEEEeCCeEEEeeCCCCCCceeEEcchhhhhhccCCCeEEEeccccCCceEEEEEEeCcEEEEEeCCCCCeEE
Q 003213          237 LKNLKGWVEKVDEENVHIRPEMKGLPKTLAVNSKELCKYFEPGNHVKVVSGTQAGATGMVLKVEQHVLIILSDTTKEDIR  316 (838)
Q Consensus       237 l~~l~G~V~~V~~d~V~i~~~~~~l~~~i~v~~~~LrK~F~~GDhVkVi~G~~~getGlVvkVe~~~v~vlSD~t~~ei~  316 (838)
                      |+|++|+|++|++++|+|++++++|+.+|+|++++|||||++|||||||+|+|+|+|||||+|+++.|+||||++++|++
T Consensus       421 l~glkG~ve~vdg~~vti~~~~e~l~~pl~~~~~eLrKyF~~GDhVKVi~G~~eG~tGlVvrVe~~~vi~~Sd~t~eel~  500 (1024)
T KOG1999|consen  421 LKGLKGKVESVDGTIVTIMSKHEDLKGPLEVPASELRKYFEPGDHVKVIAGRYEGDTGLVVRVEQGDVILLSDLTMEELK  500 (1024)
T ss_pred             eccceeEEEeccCceEEEeeccccCCCccccchHhhhhhccCCCeEEEEeccccCCcceEEEEeCCeEEEEecCccceee
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EcccccccccccccccccCCceEecceEEeCCCcEEEEEEEecceEEEEecCCCCCcEEEEEccccccccc-cCccccCC
Q 003213          317 VFADDVVESSEVTTGITKIGDYELRDLVLLDNNSFGVIIRVESEAFQVLKGVPDRPEVALVKLREIKCKLE-KKSNVQDR  395 (838)
Q Consensus       317 V~~~dL~~~~e~~~g~d~~g~y~l~DLVqld~~~vGvIv~ier~~~~VL~~~~~~g~v~~vk~~~I~~K~~-~~~~a~D~  395 (838)
                      ||++||++|++++++++.+|+|+||||||||.++||||++++++.|+||++   ++.|++|++++|.+|++ ++++|+|+
T Consensus       501 Vf~~dlq~c~ev~~gv~~~ge~e~hdlVqLd~~~vgvI~rle~e~~~vl~~---~g~v~~i~~~~i~~kk~~r~~~~~D~  577 (1024)
T KOG1999|consen  501 VFARDLQLCSEVTLGVEKSGEYELHDLVQLDNQNVGVIVRLERETFQVLGM---NGKVVTIRKSSITKKKDNRKAVAVDR  577 (1024)
T ss_pred             EEehhcccchheeecccccccccccceeecCCCcEEEEEEecchheeeecC---cCceEEEeechhhhhhhhhhheeecc
Confidence            999999999999999999999999999999999999999999999999997   57999999999988886 45999999


Q ss_pred             CCCeecCCCEEEEEcCCCCCceeeEEEEECCEEEEEeCceeccccEEEEeCCceEEecccCCCCCCCCCccccCCCCCCC
Q 003213          396 NKNTVAVKDVVRIVEGPCKGKQGPVEHIYRGILFIHDRHHLEHAGFICAKSSSCVVVGGSRANGDRNGDAYSRFNSLRTP  475 (838)
Q Consensus       396 ~gn~i~~gd~Vki~~Gp~kG~~G~Vkhi~r~~lFL~~~~~~En~Gifv~~a~~~~~~g~~~~~~~~~~~~~~~~~~~~~p  475 (838)
                      ++|.|+++|+|+++.||++|++|.|+||||.++|||||+++||+|||||+++||.++|++++.. ......+.|++|+ |
T Consensus       578 ~~n~I~~kD~Vkvi~Gp~~g~~G~v~~i~r~~~F~h~r~~~En~Gv~vck~k~~~~~g~~~st~-~~~~~~~~l~~ms-P  655 (1024)
T KOG1999|consen  578 NGNEIRVKDTVKVIGGPSKGREGEVLHIYRPFVFLHSRKNLENGGVFVCKEKNLILAGGKKSTN-SLAFNKGALAPMS-P  655 (1024)
T ss_pred             cCCeecccceEEEecCCCCCccCccceeecceeeeeehhhcccCCeEEEecCCceeccccCccc-chhhcccccCCCC-c
Confidence            9999999999999999999999999999999999999999999999999999999999976421 1112345566665 4


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCC-C-ccccCcEEEEeecCCCCceeEEEeecCCeEEEEeccCceEEEEecccccc
Q 003213          476 PRIPQSPGRYSRGGPPAGGRNRGGRGG-H-DALVGTTVKVRLGPYKGYRGRVVDVKGQSVRVELESQMKVVTVDRSMISD  553 (838)
Q Consensus       476 ~~~~~sp~~~~~~~~~~ggr~~~~~g~-r-d~liGktV~I~~GpyKG~~G~Vkdat~~~~rVELhs~~k~I~V~r~~l~~  553 (838)
                      . ..++|++++.++ .++|+++++||| | |.+|||||+|+.||||||+|+|||+|+++||||||++|++|+|||.++..
T Consensus       656 ~-r~~sp~~~~~~~-ga~g~~gggrGg~rd~~l~GktVrI~~Gp~KG~~GivkD~~~~~arVELhs~~~ti~vd~~~~~~  733 (1024)
T KOG1999|consen  656 G-RIQSPMGPSGGP-GAFGGHGGGRGGNRDDSLLGKTVRIRLGPKKGYLGIVKDVNGDTARVELHSKCVTIKVDRLKRKI  733 (1024)
T ss_pred             c-cccCCcCCCCCC-CCcCcCccCccCcCcchhcCcEEEEecCCcccccceeEeccCCeeEEEEEeccEEEEechhhceE
Confidence            3 336666544332 222333444555 4 59999999999999999999999999999999999999999999999987


Q ss_pred             ccc-----cccccc-------C-CCC-CCCCCCCCCCCCCCCCCC-CCCCCCCCCCCcCCCCCCCCCCCCCCCCCCCCCC
Q 003213          554 NVV-----VSTPYR-------D-TPR-YGMGSETPMHPSRTPLHP-YMTPMRDAGATPIHDGMRTPMRDRAWNPYTPMSP  618 (838)
Q Consensus       554 ~~~-----~~~~~~-------~-~~~-~~~g~~tp~~~s~TPm~~-~~TP~~~g~~TP~hdg~~tP~~~~aw~p~~p~tp  618 (838)
                      +..     ....|.       + +|. |++||+||||||+||+|+ ++||++++++||+|||+||||+++||+|++++||
T Consensus       734 v~~~~~~g~~~sYg~~~~~~g~~~~~~~~~Gs~tp~~~s~tpl~~~s~tp~~~~~~Tp~~dG~rTP~r~~aW~~~~~~tP  813 (1024)
T KOG1999|consen  734 VGSTRDGGETSSYGERTPGYGRVTPARYGMGSSTPMYGSNTPLWGGSRTPARDGGATPSHDGSRTPARGRAWNPYNGKTP  813 (1024)
T ss_pred             EeeccCCCCccccccccccccccCccccCCCCcCccCCCCCCCCCcccCccccCCCCcCCCCCcCCCCCCCcCCCCCCCC
Confidence            653     334454       1 333 478999999999999998 9999999999999999999999999999999999


Q ss_pred             CC--CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCC----cCCCCCCCCCCCCC
Q 003213          619 PR--DNWEDGNPGSWGTSPQYQPGSPPSRAYEAPTPGSGWASTPG-GNYSDAGTPRDSSSTY----VNAPSPYLPSTPGG  691 (838)
Q Consensus       619 ~r--~~~~~~~p~~~~~tp~y~~~tp~~~~~~~~TPg~~~~~Tpg-~~y~~~~tP~~~~~~y----~~~p~~y~p~tp~~  691 (838)
                      +|  ++|+++.++.|+.+|+|.        |.|+|||+.|+.+++ +.|..+.||....|+|    +++|++   ++++.
T Consensus       814 a~~~~~~~~g~~g~~g~sp~~~--------~~a~Tpg~~~~~~~~~~~~~~~g~~~~~gsa~~~~~~~sps~---sp~~~  882 (1024)
T KOG1999|consen  814 ARNFDNREPGFEGSGGRSPQGY--------YSAPTPGSNWGSTGGGGAPAWPGTPNGNGSAWGPSGQNSPSP---SPWGY  882 (1024)
T ss_pred             ccccCCcccCCCCCCCCCCCCC--------cCCCCCCCCCCcCCCCCCcCCCCCCCCCccccccccCCCCCC---CCccC
Confidence            99  789999998999888654        678999998886654 5566666665444444    344444   22222


Q ss_pred             -CCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCcccCCCCCCCCccCcEEEEecCCCccEEEEEEeCCCCeEEEEeccCC
Q 003213          692 -QPMTPNSASYLPGTPGG-QPMTPGTGGLDAMSPVIGADNEGPWFMPDILVRRSGEESVVGVIREVLPDGSCRVVLGSSG  769 (838)
Q Consensus       692 -~p~tp~~~~y~p~tpg~-~p~tp~~~g~~~~~p~~~~~~~~~W~~~~I~V~~~g~~~~~gvI~~V~~dg~~~V~l~~~~  769 (838)
                       .+||||+++|.|.|||+ +|||||+ +++.++... ++....| .+|..+ ...--++.++||+|.+ |.|+|+|.++ 
T Consensus       883 ~~~~tpss~s~~p~tpgg~~~~Tpgs-~~d~~~~~~-~~~~~~~-~~d~~~-~~~~~G~~~~ir~v~~-G~~sv~~~de-  956 (1024)
T KOG1999|consen  883 QNNPTPSSSSYGPKTPGGGNPMTPGS-GLDSGSGNG-GDGNSSW-GPDTSL-DTQLVGQTGIIRSVAD-GGCSVWLGDE-  956 (1024)
T ss_pred             ccCCCCcccccCCCCCCCCCCCCCCc-cccccCCCC-CccceEe-cccccc-cceecccccceeeccC-CceeeecCCC-
Confidence             37799999999999998 9999999 466665322 1222233 333333 0001166889999977 9999999996 


Q ss_pred             CCceEEecCCCceEcCCCCCCcEEEEcCCCCCceEEEEEEeCCCeEEEecCCCceEEEeccccccccCC
Q 003213          770 NGDTITALPNEIEIVPPRKTDKIKIMGGPHRGATGKLIGVDGTDGIVKVDVSLDVKILDMAILAKLAQP  838 (838)
Q Consensus       770 ~g~~v~v~~~~Le~V~P~kgd~VkVi~G~~rG~tG~LisiD~~dgiVk~d~~~~~kil~~~~L~Kl~~~  838 (838)
                       ++++.++++||+++.|.++|.+||+.|.+||.+|+|+++|+.+||||+|.+.++|||++.+||||++|
T Consensus       957 -~~~~~~s~~~~a~~~p~~~d~~k~~~g~~~g~~~~~~~~dg~~g~~~~d~~~~~k~l~~~~~~k~~~~ 1024 (1024)
T KOG1999|consen  957 -GETISNSKPHLAPAPPCKGDDVKSIWGDDRGSTGKLVGNDGWDGIVRIDETSDIKILNLGLLCKMVSP 1024 (1024)
T ss_pred             -CcccccccccCccCCCCCCCCccccccccccccccccCCCcccceecccccccchhhhhhhhhhccCC
Confidence             79999999999999999999999999999999999999999999999999999999999999999875

>COG5164 SPT5 Transcription elongation factor [Transcription] Back     alignment and domain information
>KOG1999 consensus RNA polymerase II transcription elongation factor DSIF/SUPT5H/SPT5 [Transcription] Back     alignment and domain information
>COG5164 SPT5 Transcription elongation factor [Transcription] Back     alignment and domain information
>PRK08559 nusG transcription antitermination protein NusG; Validated Back     alignment and domain information
>TIGR00405 L26e_arch ribosomal protein L24p/L26e, archaeal Back     alignment and domain information
>PF03439 Spt5-NGN: Early transcription elongation factor of RNA pol II, NGN section; InterPro: IPR005100 Spt5p and prokaryotic NusG are shown to contain a novel 'NGN' domain Back     alignment and domain information
>COG0250 NusG Transcription antiterminator [Transcription] Back     alignment and domain information
>PF12815 CTD: Spt5 C-terminal nonapeptide repeat binding Spt4; PDB: 2E70_A Back     alignment and domain information
>PRK05609 nusG transcription antitermination protein NusG; Validated Back     alignment and domain information
>TIGR01956 NusG_myco NusG family protein Back     alignment and domain information
>TIGR00922 nusG transcription termination/antitermination factor NusG Back     alignment and domain information
>KOG0260 consensus RNA polymerase II, large subunit [Transcription] Back     alignment and domain information
>KOG0260 consensus RNA polymerase II, large subunit [Transcription] Back     alignment and domain information
>PRK09014 rfaH transcriptional activator RfaH; Provisional Back     alignment and domain information
>PF12815 CTD: Spt5 C-terminal nonapeptide repeat binding Spt4; PDB: 2E70_A Back     alignment and domain information
>TIGR01955 RfaH transcriptional activator RfaH Back     alignment and domain information
>KOG2837 consensus Protein containing a U1-type Zn-finger and implicated in RNA splicing or processing [RNA processing and modification] Back     alignment and domain information
>PF00467 KOW: KOW motif; InterPro: IPR005824 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms Back     alignment and domain information
>PF00467 KOW: KOW motif; InterPro: IPR005824 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms Back     alignment and domain information
>smart00738 NGN In Spt5p, this domain may confer affinity for Spt4p Back     alignment and domain information
>KOG4315 consensus G-patch nucleic acid binding protein [General function prediction only] Back     alignment and domain information
>smart00739 KOW KOW (Kyprides, Ouzounis, Woese) motif Back     alignment and domain information
>smart00739 KOW KOW (Kyprides, Ouzounis, Woese) motif Back     alignment and domain information
>PRK01191 rpl24p 50S ribosomal protein L24P; Validated Back     alignment and domain information
>CHL00141 rpl24 ribosomal protein L24; Validated Back     alignment and domain information
>TIGR00405 L26e_arch ribosomal protein L24p/L26e, archaeal Back     alignment and domain information
>PRK12281 rplX 50S ribosomal protein L24; Reviewed Back     alignment and domain information
>PRK09014 rfaH transcriptional activator RfaH; Provisional Back     alignment and domain information
>PRK00004 rplX 50S ribosomal protein L24; Reviewed Back     alignment and domain information
>TIGR00922 nusG transcription termination/antitermination factor NusG Back     alignment and domain information
>PRK12281 rplX 50S ribosomal protein L24; Reviewed Back     alignment and domain information
>TIGR01080 rplX_A_E ribosomal protein L24p/L26e, archaeal/eukaryotic Back     alignment and domain information
>COG0250 NusG Transcription antiterminator [Transcription] Back     alignment and domain information
>CHL00141 rpl24 ribosomal protein L24; Validated Back     alignment and domain information
>PRK00004 rplX 50S ribosomal protein L24; Reviewed Back     alignment and domain information
>TIGR01080 rplX_A_E ribosomal protein L24p/L26e, archaeal/eukaryotic Back     alignment and domain information
>PRK05609 nusG transcription antitermination protein NusG; Validated Back     alignment and domain information
>PRK08559 nusG transcription antitermination protein NusG; Validated Back     alignment and domain information
>PTZ00194 60S ribosomal protein L26; Provisional Back     alignment and domain information
>TIGR01955 RfaH transcriptional activator RfaH Back     alignment and domain information
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton] Back     alignment and domain information
>KOG1708 consensus Mitochondrial/chloroplast ribosomal protein L24 [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>TIGR01079 rplX_bact ribosomal protein L24, bacterial/organelle Back     alignment and domain information
>TIGR01956 NusG_myco NusG family protein Back     alignment and domain information
>TIGR01079 rplX_bact ribosomal protein L24, bacterial/organelle Back     alignment and domain information
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton] Back     alignment and domain information
>PRK01191 rpl24p 50S ribosomal protein L24P; Validated Back     alignment and domain information
>PRK06763 F0F1 ATP synthase subunit alpha; Validated Back     alignment and domain information
>COG0198 RplX Ribosomal protein L24 [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PTZ00194 60S ribosomal protein L26; Provisional Back     alignment and domain information
>COG0198 RplX Ribosomal protein L24 [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PRK12269 bifunctional cytidylate kinase/ribosomal protein S1; Provisional Back     alignment and domain information
>cd04467 S1_aIF5A S1_aIF5A: Archaeal translation Initiation Factor 5A (aIF5A), S1-like RNA-binding domain Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query838
3h7h_B106 Crystal Structure Of The Human Transcription Elonga 1e-09
2do3_A69 Solution Structure Of The Third Kow Motif Of Transc 2e-07
3p8b_B152 X-Ray Crystal Structure Of Pyrococcus Furiosus Tran 5e-05
3qqc_D163 Crystal Structure Of Archaeal Spt45 BOUND TO THE RN 6e-05
2e70_A71 Solution Structure Of The Fifth Kow Motif Of Human 1e-04
>pdb|3H7H|B Chain B, Crystal Structure Of The Human Transcription Elongation Factor Dsif, Hspt4HSPT5 (176-273) Length = 106 Back     alignment and structure 
Iteration: 1

 Score = 62.0 bits (149), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 32/66 (48%), Positives = 49/66 (74%), Gaps = 6/66 (9%)
Query: 11  LQIRSVIALDHLKNYIYIEADKEAHVKEACKGLRNI----YSQKVMLVPIREMTDVLAVE 66
           LQI+SV+A +H+K YIY+EA K+ HVK+A +G+ N+    ++Q+  +VPI+EMTDVL V 
Sbjct: 39  LQIKSVVAPEHVKGYIYVEAYKQTHVKQAIEGVGNLRLGYWNQQ--MVPIKEMTDVLKVV 96
Query: 67  SKAIDL 72
            +  +L
Sbjct: 97  KEVANL 102
>pdb|2DO3|A Chain A, Solution Structure Of The Third Kow Motif Of Transcription Elongation Factor Spt5 Length = 69 Back     alignment and structure
>pdb|3P8B|B Chain B, X-Ray Crystal Structure Of Pyrococcus Furiosus Transcription Elongation Factor Spt45 Length = 152 Back     alignment and structure
>pdb|3QQC|D Chain D, Crystal Structure Of Archaeal Spt45 BOUND TO THE RNAP CLAMP DOMAIN Length = 163 Back     alignment and structure
>pdb|2E70|A Chain A, Solution Structure Of The Fifth Kow Motif Of Human Transcription Elongation Factor Spt5 Length = 71 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query838
3p8b_B152 Transcription antitermination protein NUSG; transc 1e-32
2do3_A69 Transcription elongation factor SPT5; KOW motif, s 4e-23
2exu_A200 Transcription initiation protein SPT4/SPT5; helixs 2e-22
3h7h_B106 Transcription elongation factor SPT5; helices surr 4e-21
2e70_A71 Transcription elongation factor SPT5; KOW motif, s 8e-18
2e6z_A59 Transcription elongation factor SPT5; KOW motif, s 6e-16
2ckk_A127 KIN17; beta barrel, ribosomal protein, ribonucleop 1e-14
3lpe_A92 Putative transcription antitermination protein NU; 7e-13
1twf_A1733 B220, DNA-directed RNA polymerase II largest subun 8e-12
1twf_A1733 B220, DNA-directed RNA polymerase II largest subun 2e-09
1twf_A1733 B220, DNA-directed RNA polymerase II largest subun 5e-06
1twf_A1733 B220, DNA-directed RNA polymerase II largest subun 3e-04
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-11
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-10
1vt4_I1221 APAF-1 related killer DARK; drosophila apoptosome, 6e-10
3h0g_A1752 DNA-directed RNA polymerase II subunit RPB1; trans 8e-10
3h0g_A1752 DNA-directed RNA polymerase II subunit RPB1; trans 2e-09
3h0g_A1752 DNA-directed RNA polymerase II subunit RPB1; trans 1e-07
3h0g_A1752 DNA-directed RNA polymerase II subunit RPB1; trans 2e-06
1deq_A390 Fibrinogen (alpha chain); coiled-coil, blood clott 4e-08
1deq_A390 Fibrinogen (alpha chain); coiled-coil, blood clott 5e-07
1deq_A390 Fibrinogen (alpha chain); coiled-coil, blood clott 1e-06
1dx0_A219 Prion protein; brain, repeat; NMR {Bos taurus} SCO 3e-04
1m2v_B 926 SEC24, protein transport protein SEC24, SEC24P, SE 3e-04
>3p8b_B Transcription antitermination protein NUSG; transcription elongation factor, RNA polymerase, transferase transcription complex; 1.80A {Pyrococcus furiosus} PDB: 3qqc_D Length = 152 Back     alignment and structure
 Score =  122 bits (308), Expect = 1e-32
 Identities = 34/128 (26%), Positives = 55/128 (42%), Gaps = 2/128 (1%)

Query: 1   MQKCIDKGSELQIRSVIALDHLKNYIYIEADKEAHVKEACKGLRNIYSQKVMLVPIREMT 60
             K       L I +++A   +K YI++EA  +  V EA +G+R+        VP +E+ 
Sbjct: 23  YSKVRTYN--LPIYAILAPSRVKGYIFVEAPNKGVVDEAIRGIRHARGVLPGEVPFKEIE 80

Query: 61  DVLAVESKAIDLSRDTWVRMKIGNYKGDLAKVVDVDNVRQRVTVKLIPRIDLQALANKLE 120
             L  +     L     V +  G +KG  AKVV +D  +  V V+ I  I    +  K +
Sbjct: 81  HFLEEKPAVSGLEPGDLVEVIAGPFKGQKAKVVKIDESKDEVVVQFIDAIVPIPVTIKGD 140

Query: 121 GREVAKKK 128
              +  K 
Sbjct: 141 YVRLISKL 148
>2do3_A Transcription elongation factor SPT5; KOW motif, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.34.5.5 Length = 69 Back     alignment and structure
>2exu_A Transcription initiation protein SPT4/SPT5; helixs surrounding beta sheet; 2.23A {Saccharomyces cerevisiae} Length = 200 Back     alignment and structure
>3h7h_B Transcription elongation factor SPT5; helices surrounding beta sheet, activator, ME binding, nucleus, repressor, transcription regulation; 1.55A {Homo sapiens} Length = 106 Back     alignment and structure
>2e70_A Transcription elongation factor SPT5; KOW motif, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 71 Back     alignment and structure
>2e6z_A Transcription elongation factor SPT5; KOW motif, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 59 Back     alignment and structure
>2ckk_A KIN17; beta barrel, ribosomal protein, ribonucleoprotein, nuclear protein; 1.45A {Homo sapiens} Length = 127 Back     alignment and structure
>3lpe_A Putative transcription antitermination protein NU; transcription regulation, SPT4, SPT5, NUSG, archaea, evoluti directed RNA polymerase; 1.90A {Methanocaldococcus jannaschii} PDB: 3ewg_A Length = 92 Back     alignment and structure
>1twf_A B220, DNA-directed RNA polymerase II largest subunit; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: e.29.1.2 PDB: 1i3q_A 1i6h_A 1k83_A* 1nik_A 1nt9_A 1pqv_A 1r5u_A 1r9s_A* 1r9t_A* 1sfo_A* 1twa_A* 1twc_A* 1i50_A* 1twg_A* 1twh_A* 1wcm_A 1y1v_A 1y1w_A 1y1y_A 1y77_A* ... Length = 1733 Back     alignment and structure
>1twf_A B220, DNA-directed RNA polymerase II largest subunit; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: e.29.1.2 PDB: 1i3q_A 1i6h_A 1k83_A* 1nik_A 1nt9_A 1pqv_A 1r5u_A 1r9s_A* 1r9t_A* 1sfo_A* 1twa_A* 1twc_A* 1i50_A* 1twg_A* 1twh_A* 1wcm_A 1y1v_A 1y1w_A 1y1y_A 1y77_A* ... Length = 1733 Back     alignment and structure
>1twf_A B220, DNA-directed RNA polymerase II largest subunit; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: e.29.1.2 PDB: 1i3q_A 1i6h_A 1k83_A* 1nik_A 1nt9_A 1pqv_A 1r5u_A 1r9s_A* 1r9t_A* 1sfo_A* 1twa_A* 1twc_A* 1i50_A* 1twg_A* 1twh_A* 1wcm_A 1y1v_A 1y1w_A 1y1y_A 1y77_A* ... Length = 1733 Back     alignment and structure
>1twf_A B220, DNA-directed RNA polymerase II largest subunit; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: e.29.1.2 PDB: 1i3q_A 1i6h_A 1k83_A* 1nik_A 1nt9_A 1pqv_A 1r5u_A 1r9s_A* 1r9t_A* 1sfo_A* 1twa_A* 1twc_A* 1i50_A* 1twg_A* 1twh_A* 1wcm_A 1y1v_A 1y1w_A 1y1y_A 1y77_A* ... Length = 1733 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>3h0g_A DNA-directed RNA polymerase II subunit RPB1; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe} Length = 1752 Back     alignment and structure
>3h0g_A DNA-directed RNA polymerase II subunit RPB1; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe} Length = 1752 Back     alignment and structure
>3h0g_A DNA-directed RNA polymerase II subunit RPB1; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe} Length = 1752 Back     alignment and structure
>3h0g_A DNA-directed RNA polymerase II subunit RPB1; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe} Length = 1752 Back     alignment and structure
>1dx0_A Prion protein; brain, repeat; NMR {Bos taurus} SCOP: d.6.1.1 PDB: 1dx1_A 1qlx_A 1qlz_A Length = 219 Back     alignment and structure
>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query838
2ckk_A127 KIN17; beta barrel, ribosomal protein, ribonucleop 99.89
2do3_A69 Transcription elongation factor SPT5; KOW motif, s 99.87
2e70_A71 Transcription elongation factor SPT5; KOW motif, s 99.85
3h7h_B106 Transcription elongation factor SPT5; helices surr 99.73
3p8b_B152 Transcription antitermination protein NUSG; transc 99.66
2exu_A200 Transcription initiation protein SPT4/SPT5; helixs 99.57
2do3_A69 Transcription elongation factor SPT5; KOW motif, s 99.11
1m1h_A248 Transcription antitermination protein NUSG; transc 98.7
2e6z_A59 Transcription elongation factor SPT5; KOW motif, s 98.67
2jvv_A181 Transcription antitermination protein NUSG; transc 98.66
2xhc_A352 Transcription antitermination protein NUSG; 2.45A 98.62
3lpe_A92 Putative transcription antitermination protein NU; 98.39
2oug_A162 Transcriptional activator RFAH; transcription fact 97.87
2e70_A71 Transcription elongation factor SPT5; KOW motif, s 97.24
1nz9_A58 Transcription antitermination protein NUSG; transc 97.08
1nz9_A58 Transcription antitermination protein NUSG; transc 97.06
1twf_A 1733 B220, DNA-directed RNA polymerase II largest subun 96.92
1twf_A1733 B220, DNA-directed RNA polymerase II largest subun 96.82
2e6z_A59 Transcription elongation factor SPT5; KOW motif, s 96.61
3p8b_B152 Transcription antitermination protein NUSG; transc 95.9
2ckk_A127 KIN17; beta barrel, ribosomal protein, ribonucleop 95.78
2zjr_R115 50S ribosomal protein L24; ribosome, large ribosom 95.13
1nz8_A119 Transcription antitermination protein NUSG; transc 94.93
1vq8_T120 50S ribosomal protein L24P; ribosome 50S, protein- 94.79
2jvv_A181 Transcription antitermination protein NUSG; transc 94.05
3v2d_Y110 50S ribosomal protein L24; ribosome associated inh 93.87
2zkr_t145 60S ribosomal protein L26; protein-RNA complex, 60 93.35
3r8s_U102 50S ribosomal protein L24; protein biosynthesis, R 93.28
3j21_U121 50S ribosomal protein L24P; archaea, archaeal, KIN 92.98
2zjr_R115 50S ribosomal protein L24; ribosome, large ribosom 92.82
3j21_U121 50S ribosomal protein L24P; archaea, archaeal, KIN 92.66
2zkr_t145 60S ribosomal protein L26; protein-RNA complex, 60 92.31
3v2d_Y110 50S ribosomal protein L24; ribosome associated inh 91.81
3u5e_Y127 L33, YL33, 60S ribosomal protein L26-A; translatio 91.62
3u5e_Y127 L33, YL33, 60S ribosomal protein L26-A; translatio 91.34
3iz5_Y150 60S ribosomal protein L26 (L24P); eukaryotic ribos 90.86
4a17_S135 RPL26, 60S ribosomal protein L21; eukaryotic ribos 90.78
3iz5_Y150 60S ribosomal protein L26 (L24P); eukaryotic ribos 90.54
2xhc_A352 Transcription antitermination protein NUSG; 2.45A 90.53
3r8s_U102 50S ribosomal protein L24; protein biosynthesis, R 90.43
1vq8_T120 50S ribosomal protein L24P; ribosome 50S, protein- 90.3
4a17_S135 RPL26, 60S ribosomal protein L21; eukaryotic ribos 90.2
1m1h_A248 Transcription antitermination protein NUSG; transc 89.51
3h8z_A128 FragIle X mental retardation syndrome-related Pro; 89.31
2ftc_N96 Mitochondrial ribosomal protein L24; mitochondrial 88.26
2ftc_N96 Mitochondrial ribosomal protein L24; mitochondrial 85.83
3bbo_W191 Ribosomal protein L24; large ribosomal subunit, sp 84.71
1deq_A390 Fibrinogen (alpha chain); coiled-coil, blood clott 80.57
3bbo_W191 Ribosomal protein L24; large ribosomal subunit, sp 80.2
>2ckk_A KIN17; beta barrel, ribosomal protein, ribonucleoprotein, nuclear protein; 1.45A {Homo sapiens} Back     alignment and structure
Probab=99.89  E-value=1.8e-23  Score=198.76  Aligned_cols=105  Identities=22%  Similarity=0.391  Sum_probs=94.7

Q ss_pred             CCCCccCcEEE-E--e---cCCCccEEEEEEeCCCCeEEEEeccCCCCceEEecCCCceEcCCCCCCcEEEEcCCCCCce
Q 003213          730 EGPWFMPDILV-R--R---SGEESVVGVIREVLPDGSCRVVLGSSGNGDTITALPNEIEIVPPRKTDKIKIMGGPHRGAT  803 (838)
Q Consensus       730 ~~~W~~~~I~V-~--~---~g~~~~~gvI~~V~~dg~~~V~l~~~~~g~~v~v~~~~Le~V~P~kgd~VkVi~G~~rG~t  803 (838)
                      .++|+++||+| +  +   .++++++|+|++|.++++|+|+|.++  |+.++++|+|||||+|++|++|+||+|+|||++
T Consensus        11 ~~~Wl~~~I~Vrii~k~~~~g~y~~KgvV~~V~~~~~c~V~l~~~--g~~v~v~q~~LETViP~~g~~V~Iv~G~~rG~~   88 (127)
T 2ckk_A           11 TDYWLQPEIIVKIITKKLGEKYHKKKAIVKEVIDKYTAVVKMIDS--GDKLKLDQTHLETVIPAPGKRILVLNGGYRGNE   88 (127)
T ss_dssp             CSCCCCTTBEEEECCSTTCGGGTTCEEEEEEEETTTEEEEEETTT--CCEEEEEGGGEEECCCCTTCEEEECSSTTTTCE
T ss_pred             CCCcccCCeEEEEEEccCCCcccCceEEEEEecCCCeEEEEECCC--CCEEEEchHHcEEecCCCCCEEEEEecccCCcE
Confidence            46899999999 5  2   23459999999998889999999887  689999999999999999999999999999999


Q ss_pred             EEEEEEeCC--CeEEEecC----CCceEEEecccccccc
Q 003213          804 GKLIGVDGT--DGIVKVDV----SLDVKILDMAILAKLA  836 (838)
Q Consensus       804 G~LisiD~~--dgiVk~d~----~~~~kil~~~~L~Kl~  836 (838)
                      |+|+++|.+  .|+|+|++    +..+++|+|++|||++
T Consensus        89 g~L~~id~~~~~~~V~l~~~~~~~~~v~~l~~ddi~k~~  127 (127)
T 2ckk_A           89 GTLESINEKTFSATIVIETGPLKGRRVEGIQYEDISKLA  127 (127)
T ss_dssp             EEEEEEEGGGTEEEEEECSSTTTTCEEEEEEGGGEEEBC
T ss_pred             EEEEEEeCCCcEEEEEEccCCCCCCEEEeeCHHHhhccC
Confidence            999999988  99999996    3368899999999985
>2do3_A Transcription elongation factor SPT5; KOW motif, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.34.5.5 Back     alignment and structure
>2e70_A Transcription elongation factor SPT5; KOW motif, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>3h7h_B Transcription elongation factor SPT5; helices surrounding beta sheet, activator, ME binding, nucleus, repressor, transcription regulation; 1.55A {Homo sapiens} Back     alignment and structure
>3p8b_B Transcription antitermination protein NUSG; transcription elongation factor, RNA polymerase, transferase transcription complex; 1.80A {Pyrococcus furiosus} PDB: 3qqc_D Back     alignment and structure
>2exu_A Transcription initiation protein SPT4/SPT5; helixs surrounding beta sheet; 2.23A {Saccharomyces cerevisiae} Back     alignment and structure
>2do3_A Transcription elongation factor SPT5; KOW motif, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.34.5.5 Back     alignment and structure
>1m1h_A Transcription antitermination protein NUSG; transcription termination, RNP motif, immunoglobulin fold, nucleic acid interaction; 1.95A {Aquifex aeolicus} SCOP: b.114.1.1 d.58.42.1 PDB: 1m1g_A 1npp_A 1npr_A Back     alignment and structure
>2e6z_A Transcription elongation factor SPT5; KOW motif, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>2jvv_A Transcription antitermination protein NUSG; transcription factor, transcription regulation, transcription termination; NMR {Escherichia coli} PDB: 2k06_A 2kvq_G Back     alignment and structure
>2xhc_A Transcription antitermination protein NUSG; 2.45A {Thermotoga maritima} Back     alignment and structure
>3lpe_A Putative transcription antitermination protein NU; transcription regulation, SPT4, SPT5, NUSG, archaea, evoluti directed RNA polymerase; 1.90A {Methanocaldococcus jannaschii} PDB: 3ewg_A Back     alignment and structure
>2oug_A Transcriptional activator RFAH; transcription factor, virulence, transcription pausing, transcription elongation; 2.10A {Escherichia coli} Back     alignment and structure
>2e70_A Transcription elongation factor SPT5; KOW motif, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>1nz9_A Transcription antitermination protein NUSG; transcription elongation, riken structural genomics/proteomics initiative, RSGI; NMR {Thermus thermophilus} SCOP: b.34.5.4 Back     alignment and structure
>1nz9_A Transcription antitermination protein NUSG; transcription elongation, riken structural genomics/proteomics initiative, RSGI; NMR {Thermus thermophilus} SCOP: b.34.5.4 Back     alignment and structure
>1twf_A B220, DNA-directed RNA polymerase II largest subunit; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: e.29.1.2 PDB: 1i3q_A 1i6h_A 1k83_A* 1nik_A 1nt9_A 1pqv_A 1r5u_A 1r9s_A* 1r9t_A* 1sfo_A* 1twa_A* 1twc_A* 1i50_A* 1twg_A* 1twh_A* 1wcm_A 1y1v_A 1y1w_A 1y1y_A 1y77_A* ... Back     alignment and structure
>1twf_A B220, DNA-directed RNA polymerase II largest subunit; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: e.29.1.2 PDB: 1i3q_A 1i6h_A 1k83_A* 1nik_A 1nt9_A 1pqv_A 1r5u_A 1r9s_A* 1r9t_A* 1sfo_A* 1twa_A* 1twc_A* 1i50_A* 1twg_A* 1twh_A* 1wcm_A 1y1v_A 1y1w_A 1y1y_A 1y77_A* ... Back     alignment and structure
>2e6z_A Transcription elongation factor SPT5; KOW motif, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>3p8b_B Transcription antitermination protein NUSG; transcription elongation factor, RNA polymerase, transferase transcription complex; 1.80A {Pyrococcus furiosus} PDB: 3qqc_D Back     alignment and structure
>2ckk_A KIN17; beta barrel, ribosomal protein, ribonucleoprotein, nuclear protein; 1.45A {Homo sapiens} Back     alignment and structure
>2zjr_R 50S ribosomal protein L24; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: b.34.5.1 PDB: 1nwx_S* 1nwy_S* 1sm1_S* 1xbp_S* 2d3o_S 2zjp_R* 2zjq_R 1nkw_S 3cf5_R* 3dll_R* 3pio_R* 3pip_R* 1pnu_S 1pny_S 1vor_V 1vou_V 1vow_V 1voy_V 1vp0_V Back     alignment and structure
>1nz8_A Transcription antitermination protein NUSG; transcription elongation, riken structural genomics/proteomics initiative, RSGI; NMR {Thermus thermophilus} SCOP: d.58.42.1 Back     alignment and structure
>1vq8_T 50S ribosomal protein L24P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: b.34.5.1 PDB: 1vq4_T* 1vq5_T* 1vq6_T* 1vq7_T* 1s72_T* 1vq9_T* 1vqk_T* 1vql_T* 1vqm_T* 1vqn_T* 1vqo_T* 1vqp_T* 1yhq_T* 1yi2_T* 1yij_T* 1yit_T* 1yj9_T* 1yjn_T* 1yjw_T* 2otj_T* ... Back     alignment and structure
>2jvv_A Transcription antitermination protein NUSG; transcription factor, transcription regulation, transcription termination; NMR {Escherichia coli} PDB: 2k06_A 2kvq_G Back     alignment and structure
>3v2d_Y 50S ribosomal protein L24; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 1vsp_S 2hgj_X 2hgq_X 2hgu_X 1vsa_S 2j03_Y 2jl6_Y 2jl8_Y 2v47_Y 2v49_Y 2wdi_Y 2wdj_Y 2wdl_Y 2wdn_Y 2wh2_Y 2wh4_Y 2wrj_Y 2wrl_Y 2wro_Y 2wrr_Y ... Back     alignment and structure
>2zkr_t 60S ribosomal protein L26; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} Back     alignment and structure
>3r8s_U 50S ribosomal protein L24; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 2j28_U* 3fik_U 3j19_U 2wwq_U 3oat_U* 3oas_U* 3ofd_U 3ofc_U 3ofr_U* 3ofz_U* 3og0_U 3ofq_U 3r8t_U 3i1n_U 1vs8_U 1vs6_U 1vt2_U 3i1p_U 3i1r_U 3i1t_U ... Back     alignment and structure
>3j21_U 50S ribosomal protein L24P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus} Back     alignment and structure
>2zjr_R 50S ribosomal protein L24; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: b.34.5.1 PDB: 1nwx_S* 1nwy_S* 1sm1_S* 1xbp_S* 2d3o_S 2zjp_R* 2zjq_R 1nkw_S 3cf5_R* 3dll_R* 3pio_R* 3pip_R* 1pnu_S 1pny_S 1vor_V 1vou_V 1vow_V 1voy_V 1vp0_V Back     alignment and structure
>3j21_U 50S ribosomal protein L24P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus} Back     alignment and structure
>2zkr_t 60S ribosomal protein L26; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} Back     alignment and structure
>3v2d_Y 50S ribosomal protein L24; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 1vsp_S 2hgj_X 2hgq_X 2hgu_X 1vsa_S 2j03_Y 2jl6_Y 2jl8_Y 2v47_Y 2v49_Y 2wdi_Y 2wdj_Y 2wdl_Y 2wdn_Y 2wh2_Y 2wh4_Y 2wrj_Y 2wrl_Y 2wro_Y 2wrr_Y ... Back     alignment and structure
>3u5e_Y L33, YL33, 60S ribosomal protein L26-A; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 2wwa_L 2ww9_L 2wwb_L 3o5h_X 3o58_X 3u5i_Y 4b6a_Y 1s1i_U 3izc_Y 3izs_Y 3jyw_U Back     alignment and structure
>3u5e_Y L33, YL33, 60S ribosomal protein L26-A; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 2wwa_L 2ww9_L 2wwb_L 3o5h_X 3o58_X 3u5i_Y 4b6a_Y 1s1i_U 3izc_Y 3izs_Y 3jyw_U Back     alignment and structure
>4a17_S RPL26, 60S ribosomal protein L21; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_S 4a1c_S 4a1e_S Back     alignment and structure
>2xhc_A Transcription antitermination protein NUSG; 2.45A {Thermotoga maritima} Back     alignment and structure
>3r8s_U 50S ribosomal protein L24; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 2j28_U* 3fik_U 3j19_U 2wwq_U 3oat_U* 3oas_U* 3ofd_U 3ofc_U 3ofr_U* 3ofz_U* 3og0_U 3ofq_U 3r8t_U 3i1n_U 1vs8_U 1vs6_U 1vt2_U 3i1p_U 3i1r_U 3i1t_U ... Back     alignment and structure
>1vq8_T 50S ribosomal protein L24P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: b.34.5.1 PDB: 1vq4_T* 1vq5_T* 1vq6_T* 1vq7_T* 1s72_T* 1vq9_T* 1vqk_T* 1vql_T* 1vqm_T* 1vqn_T* 1vqo_T* 1vqp_T* 1yhq_T* 1yi2_T* 1yij_T* 1yit_T* 1yj9_T* 1yjn_T* 1yjw_T* 2otj_T* ... Back     alignment and structure
>4a17_S RPL26, 60S ribosomal protein L21; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_S 4a1c_S 4a1e_S Back     alignment and structure
>1m1h_A Transcription antitermination protein NUSG; transcription termination, RNP motif, immunoglobulin fold, nucleic acid interaction; 1.95A {Aquifex aeolicus} SCOP: b.114.1.1 d.58.42.1 PDB: 1m1g_A 1npp_A 1npr_A Back     alignment and structure
>3h8z_A FragIle X mental retardation syndrome-related Pro; tudor domains, FXR2, structura genomics, structural genomics consortium, SGC; 1.92A {Homo sapiens} PDB: 3o8v_A 3kuf_A 2bkd_N* Back     alignment and structure
>2ftc_N Mitochondrial ribosomal protein L24; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus} PDB: 3iy9_N Back     alignment and structure
>2ftc_N Mitochondrial ribosomal protein L24; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus} PDB: 3iy9_N Back     alignment and structure
>3bbo_W Ribosomal protein L24; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} Back     alignment and structure
>3bbo_W Ribosomal protein L24; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 838
d2do3a162 b.34.5.5 (A:462-523) Transcription elongation fact 4e-22
>d2do3a1 b.34.5.5 (A:462-523) Transcription elongation factor SPT5 {Human (Homo sapiens) [TaxId: 9606]} Length = 62 Back     information, alignment and structure

class: All beta proteins
fold: SH3-like barrel
superfamily: Translation proteins SH3-like domain
family: SPT5 KOW domain-like
domain: Transcription elongation factor SPT5
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 88.2 bits (219), Expect = 4e-22
 Identities = 24/61 (39%), Positives = 42/61 (68%)

Query: 267 VNSKELCKYFEPGNHVKVVSGTQAGATGMVLKVEQHVLIILSDTTKEDIRVFADDVVESS 326
             ++EL KYF+ G+HVKV++G   G TG++++VE++ +I+ SD T  +++V   D+   S
Sbjct: 2   FPAQELRKYFKMGDHVKVIAGRFEGDTGLIVRVEENFVILFSDLTMHELKVLPRDLQLCS 61

Query: 327 E 327
           E
Sbjct: 62  E 62

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query838
d2do3a162 Transcription elongation factor SPT5 {Human (Homo 99.87
d2do3a162 Transcription elongation factor SPT5 {Human (Homo 99.13
d1nppa258 N-utilization substance G protein NusG, C-terminal 97.62
d1nz9a_58 N-utilization substance G protein NusG, C-terminal 97.55
d1nz9a_58 N-utilization substance G protein NusG, C-terminal 97.52
d1nppa258 N-utilization substance G protein NusG, C-terminal 97.24
d1m1ha2101 N-utilization substance G protein NusG, N-terminal 95.84
d1nz8a_119 N-utilization substance G protein NusG, N-terminal 93.16
d1vqot1119 Ribosomal proteins L24 (L24p) {Archaeon Haloarcula 93.12
d1vqot1119 Ribosomal proteins L24 (L24p) {Archaeon Haloarcula 92.04
d2zjrr1110 Ribosomal proteins L24 (L24p) {Deinococcus radiodu 90.89
d2zjrr1110 Ribosomal proteins L24 (L24p) {Deinococcus radiodu 88.76
d2gycs199 Ribosomal proteins L24 (L24p) {Escherichia coli [T 88.0
d2j01y1101 Ribosomal proteins L24 (L24p) {Thermus thermophilu 86.39
d1u0la166 Probable GTPase EngC (YjeQ), N-terminal domain {Th 82.9
d2j01y1101 Ribosomal proteins L24 (L24p) {Thermus thermophilu 82.06
d1t9ha167 Probable GTPase EngC (YjeQ), N-terminal domain {Ba 80.87
d2gycs199 Ribosomal proteins L24 (L24p) {Escherichia coli [T 80.47
d2z0sa188 S1-domain of exosome complex RNA-binding protein 1 80.41
>d2do3a1 b.34.5.5 (A:462-523) Transcription elongation factor SPT5 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: All beta proteins
fold: SH3-like barrel
superfamily: Translation proteins SH3-like domain
family: SPT5 KOW domain-like
domain: Transcription elongation factor SPT5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=2.2e-23  Score=170.14  Aligned_cols=62  Identities=39%  Similarity=0.710  Sum_probs=60.4

Q ss_pred             EEcchhhhhhccCCCeEEEeccccCCceEEEEEEeCcEEEEEeCCCCCeEEEcccccccccc
Q 003213          266 AVNSKELCKYFEPGNHVKVVSGTQAGATGMVLKVEQHVLIILSDTTKEDIRVFADDVVESSE  327 (838)
Q Consensus       266 ~v~~~~LrK~F~~GDhVkVi~G~~~getGlVvkVe~~~v~vlSD~t~~ei~V~~~dL~~~~e  327 (838)
                      +|++++|||+|++||||||++|+|+|+|||||+|+++.++||||+|++|++||++||++|+|
T Consensus         1 efp~~~LrK~F~~GDhVkVi~G~~~g~tGlVV~v~~~~v~~~SD~t~~Ei~V~~~dL~~~~d   62 (62)
T d2do3a1           1 EFPAQELRKYFKMGDHVKVIAGRFEGDTGLIVRVEENFVILFSDLTMHELKVLPRDLQLCSE   62 (62)
T ss_dssp             CCCCCCCCSSCCTTCEEEESSSTTTTCEEEEEEECSSCEEEEESSSCSEEEECTTSEEESCC
T ss_pred             CCChHHheeccCCCCeEEEeccEEcCccEEEEEEeCCEEEEEeCCCCCEEEEehHHhhhhcC
Confidence            58999999999999999999999999999999999999999999999999999999999986
>d2do3a1 b.34.5.5 (A:462-523) Transcription elongation factor SPT5 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1nppa2 b.34.5.4 (A:191-248) N-utilization substance G protein NusG, C-terminal domain {Aquifex aeolicus [TaxId: 63363]} Back     information, alignment and structure
>d1nz9a_ b.34.5.4 (A:) N-utilization substance G protein NusG, C-terminal domain {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1nz9a_ b.34.5.4 (A:) N-utilization substance G protein NusG, C-terminal domain {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1nppa2 b.34.5.4 (A:191-248) N-utilization substance G protein NusG, C-terminal domain {Aquifex aeolicus [TaxId: 63363]} Back     information, alignment and structure
>d1m1ha2 d.58.42.1 (A:5-50,A:132-186) N-utilization substance G protein NusG, N-terminal domain {Aquifex aeolicus [TaxId: 63363]} Back     information, alignment and structure
>d1nz8a_ d.58.42.1 (A:) N-utilization substance G protein NusG, N-terminal domain {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1vqot1 b.34.5.1 (T:1-119) Ribosomal proteins L24 (L24p) {Archaeon Haloarcula marismortui [TaxId: 2238]} Back     information, alignment and structure
>d1vqot1 b.34.5.1 (T:1-119) Ribosomal proteins L24 (L24p) {Archaeon Haloarcula marismortui [TaxId: 2238]} Back     information, alignment and structure
>d2zjrr1 b.34.5.1 (R:4-113) Ribosomal proteins L24 (L24p) {Deinococcus radiodurans [TaxId: 1299]} Back     information, alignment and structure
>d2zjrr1 b.34.5.1 (R:4-113) Ribosomal proteins L24 (L24p) {Deinococcus radiodurans [TaxId: 1299]} Back     information, alignment and structure
>d2gycs1 b.34.5.1 (S:3-101) Ribosomal proteins L24 (L24p) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2j01y1 b.34.5.1 (Y:2-102) Ribosomal proteins L24 (L24p) {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1u0la1 b.40.4.5 (A:3-68) Probable GTPase EngC (YjeQ), N-terminal domain {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d2j01y1 b.34.5.1 (Y:2-102) Ribosomal proteins L24 (L24p) {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1t9ha1 b.40.4.5 (A:1-67) Probable GTPase EngC (YjeQ), N-terminal domain {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d2gycs1 b.34.5.1 (S:3-101) Ribosomal proteins L24 (L24p) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2z0sa1 b.40.4.5 (A:60-147) S1-domain of exosome complex RNA-binding protein 1, ECR1 {Aeropyrum pernix [TaxId: 56636]} Back     information, alignment and structure