Citrus Sinensis ID: 003214

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------84

MDLPSLALILQGALSPNPEERKAAEHSLNQFQYTPQHLVRLLQIIVDNNCDLSVRQVASIHFKNFIAKNWAPHEPNEQQKISQVDKDMVRDHILVFVAQVPPLLRVQLGECLKTIIHADYPEQWPHLLDWVKHNLQDQQVYGALFVLRILSRKYEFKSDEERTPVYRIVEETFHHLLNIFNRLVQIVNPSLEVADLIKLICKIFWSSIYLEIPKQLLDPNVFNAWMILFLNVLERPVPSEGEPADPEQRKSWGWWKVKKWTVHILNRLYTRFGDLKLQNPENRAFAQMFQKNYAGKILECHLNLLNRIRVGGYLPDRVTNLILQYLSNSISKNSMYNLLQPRLDVLLFEIVFPLMCFNDNDQKLWDEDPHEYVRKGYDIIEDLYSPRTASMDFVSELVRKRGKENLQKFIQFIVGIFKRYDETPVEYKPYRQKDGALLAIGALCDKLKQTEPYKSELERMLVQHVFPEFSSPVGHLRAKAAWVAGQYAHINFSDQNNFRKALHSVVSGLRDPELPVRVDSVFALRSFVEACRDLNEIRPILPQLLDEFFKLMNEVENEDLVFTLETIVDKFGEEMAPYALGLCQNLAAAFWRCMNTAEADEDADDPGALAAVGCLRAISTILESVSRLPHLFVQIEPTLLPIMRRMLTTDGQEVFEEVLEIVSYMTFFSPTISLEMWSLWPLMMEALADWAIDFFPNILVPLDNYISRGTAHFLTCKEPDYQQSLWSMVSSIMADKNLEDGDIEPAPKLIEVVFQNCKGQVDHWVEPYLRITVERLRRAEKSYLKCLLVQVIADALYYNSSLTLSILHKLGVATEVFNLWFQMLQQVKKNGLRVNFKR

ccHHHHHHHHHHHccccHHHHHHHHHHHHHHHcccccHHHHHHHHHHcccccHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHcccHHHHHHHHcccccccccHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHccccccHHccHHcHHHHHHHHHcccccccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHcccccccHHHHHHHHHHHHccccccccccccHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHcccHHHHHHHHHHHHHHHHcccccccccc

ccHHHHHHHHHHHccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHcccccHHHHHHHHHHHHHHHcccEccccccccccccHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHccccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHccccHHHcccHHHHHHHHHHHHHHcccccHHHcccccccccccHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHcEcccccccHHHHHHHHcccHHHHHHHcccccccccHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHccccHHcccHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHccHHcccccccHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHccccHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHccHHHHHHHHHHcccHHHHHHHHHHHHHHcccccccccccc

MDLPSLALILqgalspnpeerKAAEHSLNQFQYTPQHLVRLLQIIVDNNCDLSVRQVASIHFKnfiaknwaphepneqqkisqvDKDMVRDHILVFVAQVPPLLRVQLGECLKTIihadypeqwpHLLDWVKHNLQDQQVYGALFVLRILSRkyefksdeertpvYRIVEETFHHLLNIFNRLVQIVNPSLEVADLIKLICKIFWSSiyleipkqlldpnvFNAWMILFLNVlerpvpsegepadpeqrkswgwwkvKKWTVHILNRLYTrfgdlklqnpenRAFAQMFQKNYAGKILECHLNLLNrirvggylpdRVTNLILQYLSNSisknsmynllqPRLDVLLFEIVFPlmcfndndqklwdedpheyvRKGYDIIedlysprtasMDFVSELVRKRGKENLQKFIQFIVGIFKrydetpveykpyrqkdgALLAIGALCDklkqtepykSELERMLVQhvfpefsspvghlrAKAAWVAGQYAHINFSDQNNFRKALHSVVsglrdpelpvrvDSVFALRSFVEACRDLNEIRPILPQLLDEFFKLMNEVENEDLVFTLETIVDKFGEEMAPYALGLCQNLAAAFWRCMNtaeadedaddpgaLAAVGCLRAISTILEsvsrlphlfvqieptLLPIMRRMLTTDGQEVFEEVLEIVSYMTFFSPTISLEMWSLWPLMMEALADWAidffpnilvpldnyisrgtahfltckepdyqQSLWSMVSSIMadknledgdiepapKLIEVVFQNCkgqvdhwvepYLRITVERLRRAEKSYLKCLLVQVIADALYYNSSLTLSILHKLGVATEVFNLWFQMLQQVKKnglrvnfkr

MDLPSLALILQGALSPNPEERKAAEHSLNQFQYTPQHLVRLLQIIVDNNCDLSVRQVASIHFKNFiaknwaphepnEQQKISQVDKDMVRDHILVFVAQVPPLLRVQLGECLKTIIHADYPEQWPHLLDWVKHNLQDQQVYGALFVLRILSRkyefksdeertpVYRIVEETFHHLLNIFNRLVQIVNPSLEVADLIKLICKIFWSSIYLEIPKQLLDPNVFNAWMILFLNVLERPVPSegepadpeqrkswgwwkvKKWTVHILNRLYTRFGDLKLQNPENRAFAQMFQKNYAGKILECHLNLLNRIRVGGYLPDRVTNLILQYLSNSISKNSMYNLLQPRLDVLLFEIVFPLMCFNDNDQKLWDEDPHEYVRKGYDIIEDLYSPRTASMDFVSELVRKRGKENLQKFIQFIVGIFKRYDETPVEYKPYRQKDGALLAIGALCDKLKQTEPYKSELERMLVQHVFPEFSSPVGHLRAKAAWVAGQYAHINFSDQNNFRKALHSVVSGLRDPELPVRVDSVFALRSFVEACRDLNEIRPILPQLLDEFFKLMNEVENEDLVFTLETIVDKFGEEMAPYALGLCQNLAAAFWRCMNTAEADEDADDPGALAAVGCLRAISTILesvsrlphlfVQIEPTLLPIMRRMLTTDGQEVFEEVLEIVSYMTFFSPTISLEMWSLWPLMMEALADWAIDFFPNILVPLDNYISRGTAHFLTCKEPDYQQSLWSMVSSIMADKNLEDGDIEPAPKLIEVVFQNckgqvdhwvePYLRITVERLRRAEKSYLKCLLVQVIADALYYNSSLTLSILHKLGVATEVFNLWFQMLQqvkknglrvnfkr

MDLPSLALILQGALSPNPEERKAAEHSLNQFQYTPQHLVRLLQIIVDNNCDLSVRQVASIHFKNFIAKNWAPHEPNEQQKISQVDKDMVRDHILVFVAQVPPLLRVQLGECLKTIIHADYPEQWPHLLDWVKHNLQDQQVYGALFVLRILSRKYEFKSDEERTPVYRIVEETFHHLLNIFNRLVQIVNPSLEVADLIKLICKIFWSSIYLEIPKQLLDPNVFNAWMILFLNVLERPVPSEGEPADPEQRKSWGWWKVKKWTVHILNRLYTRFGDLKLQNPENRAFAQMFQKNYAGKILECHLNLLNRIRVGGYLPDRVTNLILQYLSNSISKNSMYNLLQPRLDVLLFEIVFPLMCFNDNDQKLWDEDPHEYVRKGYDIIEDLYSPRTASMDFVSELVRKRGKENLQKFIQFIVGIFKRYDETPVEYKPYRQKDGALLAIGALCDKLKQTEPYKSELERMLVQHVFPEFSSPVGHLRAKAAWVAGQYAHINFSDQNNFRKALHSVVSGLRDPELPVRVDSVFALRSFVEACRDLNEIRPILPQLLDEFFKLMNEVENEDLVFTLETIVDKFGEEMAPYALGLCQNLAAAFWRCMNTaeadedaddpgalaaVGCLRAISTILESVSRLPHLFVQIEPTLLPIMRRMLTTDGQEVFEEVLEIVSYMTFFSPTISLEMWSLWPLMMEALADWAIDFFPNILVPLDNYISRGTAHFLTCKEPDYQQSLWSMVSSIMADKNLEDGDIEPAPKLIEVVFQNCKGQVDHWVEPYLRITVERLRRAEKSYLKCLLVQVIADALYYNSSLTLSILHKLGVATEVFNLWFQMLQQVKKNGLRVNFKR

****************************NQFQYTPQHLVRLLQIIVDNNCDLSVRQVASIHFKNFIAKNWAP***********VDKDMVRDHILVFVAQVPPLLRVQLGECLKTIIHADYPEQWPHLLDWVKHNLQDQQVYGALFVLRILSRKYEFKSDEERTPVYRIVEETFHHLLNIFNRLVQIVNPSLEVADLIKLICKIFWSSIYLEIPKQLLDPNVFNAWMILFLNVLE****************SWGWWKVKKWTVHILNRLYTRFGDLKLQNPENRAFAQMFQKNYAGKILECHLNLLNRIRVGGYLPDRVTNLILQYLSNSISKNSMYNLLQPRLDVLLFEIVFPLMCFNDNDQKLWDEDPHEYVRKGYDIIEDLYSPRTASMDFVSELVRKRGKENLQKFIQFIVGIFKRYDETPVEYKPYRQKDGALLAIGALCDKLKQTEPYKSELERMLVQHVFPEFSSPVGHLRAKAAWVAGQYAHINFSDQNNFRKALHSVVSGLRDPELPVRVDSVFALRSFVEACRDLNEIRPILPQLLDEFFKLMNEVENEDLVFTLETIVDKFGEEMAPYALGLCQNLAAAFWRCMNTAEADEDADDPGALAAVGCLRAISTILESVSRLPHLFVQIEPTLLPIMRRMLTTDGQEVFEEVLEIVSYMTFFSPTISLEMWSLWPLMMEALADWAIDFFPNILVPLDNYISRGTAHFLTCKEPDYQQSLWSMVSSIMADKNLEDGDIEPAPKLIEVVFQNCKGQVDHWVEPYLRITVERLRRAEKSYLKCLLVQVIADALYYNSSLTLSILHKLGVATEVFNLWFQMLQQVKKNGL******

MDLPSLALILQGALSPNPE*RKAAEHSLNQFQYTPQHLVRLLQIIVDNNCDLSVRQVASIHFKNFIAKNWAPHEPNEQQKISQVDKDMVRDHILVFVAQVPPLLRVQLGECLKTIIHADYPEQWPHLLDWVKHNLQDQQVYGALFVLRILSRKYEFKSDEERTPVYRIVEETFHHLLNIFNRLVQIVNPSLEVADLIKLICKIFWSSIYLEIPKQLLDPNVFNAWMILFLNVLERPVPSEGEPADPEQRKSWGWWKVKKWTVHILNRLYTRFGDLKLQNPENRAFAQMFQKNYAGKILECHLNLLNRIRVGGYLPDRVTNLILQYLSNSISKNSMYNLLQPRLDVLLFEIVFPLMCFNDNDQKLWDEDPHEYVRKGYDIIEDLYSPRTASMDFVSELVRKRGKENLQKFIQFIVGIFKRYDETPVEYKPYRQKDGALLAIGALCDKLKQTEPYKSELERMLVQHVFPEFSSPVGHLRAKAAWVAGQYAHINFSDQNNFRKALHSVVSGLRDPELPVRVDSVFALRSFVEACRDLNEIRPILPQLLDEFFKLMNEVENEDLVFTLETIVDKFGEEMAPYALGLCQNLAAAFWRCMNTAEADEDADDPGALAAVGCLRAISTILESVSRLPHLFVQIEPTLLPIMRRMLTTDGQEVFEEVLEIVSYMTFFSPTISLEMWSLWPLMMEALADWAIDFFPNILVPLDNYISRGTAHFLTCKEPDYQQSLWSMVSSIMADKNLEDGDIEPAPKLIEVVFQNCKGQVDHWVEPYLRITVERLRRAEKSYLKCLLVQVIADALYYNSSLTLSILHKLGVATEVFNLWFQMLQQVKKN********

MDLPSLALILQGALSPNPEERKAAEHSLNQFQYTPQHLVRLLQIIVDNNCDLSVRQVASIHFKNFIAKNWAPHEPNEQQKISQVDKDMVRDHILVFVAQVPPLLRVQLGECLKTIIHADYPEQWPHLLDWVKHNLQDQQVYGALFVLRILSRKYEFKSDEERTPVYRIVEETFHHLLNIFNRLVQIVNPSLEVADLIKLICKIFWSSIYLEIPKQLLDPNVFNAWMILFLNVLERPV************KSWGWWKVKKWTVHILNRLYTRFGDLKLQNPENRAFAQMFQKNYAGKILECHLNLLNRIRVGGYLPDRVTNLILQYLSNSISKNSMYNLLQPRLDVLLFEIVFPLMCFNDNDQKLWDEDPHEYVRKGYDIIEDLYSPRTASMDFVSELVRKRGKENLQKFIQFIVGIFKRYDETPVEYKPYRQKDGALLAIGALCDKLKQTEPYKSELERMLVQHVFPEFSSPVGHLRAKAAWVAGQYAHINFSDQNNFRKALHSVVSGLRDPELPVRVDSVFALRSFVEACRDLNEIRPILPQLLDEFFKLMNEVENEDLVFTLETIVDKFGEEMAPYALGLCQNLAAAFWRCMNTAEADEDADDPGALAAVGCLRAISTILESVSRLPHLFVQIEPTLLPIMRRMLTTDGQEVFEEVLEIVSYMTFFSPTISLEMWSLWPLMMEALADWAIDFFPNILVPLDNYISRGTAHFLTCKEPDYQQSLWSMVSSIMADKNLEDGDIEPAPKLIEVVFQNCKGQVDHWVEPYLRITVERLRRAEKSYLKCLLVQVIADALYYNSSLTLSILHKLGVATEVFNLWFQMLQQVKKNGLRVNFKR

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		838	2.2.26 [Sep-21-2011]
Q55CX9		1065	Probable importin-7 homol	yes	no	0.967	0.761	0.316	1e-123
Q9EPL8		1038	Importin-7 OS=Mus musculu	yes	no	0.945	0.763	0.316	1e-115
O95373		1038	Importin-7 OS=Homo sapien	yes	no	0.945	0.763	0.317	1e-114
O15397		1037	Importin-8 OS=Homo sapien	no	no	0.943	0.762	0.317	1e-111
Q7TMY7		1010	Importin-8 OS=Mus musculu	no	no	0.957	0.794	0.309	1e-110
O59809		1029	Probable importin c550.11	yes	no	0.971	0.791	0.292	2e-99
P46970		1048	Nonsense-mediated mRNA de	yes	no	0.812	0.649	0.253	6e-55
Q04175		944	Importin beta SMX1 OS=Sac	no	no	0.909	0.807	0.222	4e-38
Q9XZU1		975	Exportin-2 OS=Drosophila	no	no	0.529	0.455	0.231	5e-19
Q6GMY9		971	Exportin-2 OS=Xenopus lae	N/A	no	0.528	0.456	0.223	8e-18

>sp\|Q55CX9\|IPO7_DICDI Probable importin-7 homolog OS=Dictyostelium discoideum GN=DDB_G0269860 PE=3 SV=1	Back alignment and function desciption

 Score =  444 bits (1143), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 265/838 (31%), Positives = 467/838 (55%), Gaps = 27/838 (3%)

Query: 9   ILQGALSPNPEERKAAEHSLNQFQYTPQHLVRLLQIIVDNNCDLSVRQVASIHFKNFIAK 68
           + Q  L  +    KAAE  L Q + T  +   LL+I+  N  D+S+RQ  SI  KN I  
Sbjct: 10  LFQHTLHHDANVIKAAEAQLQQIKVTDGYSRILLKILASNEVDISIRQGVSIFLKNMIIT 69

Query: 69  NWAPHEPNEQQKISQVDKDMVRDHILVFVAQVPPLLRVQLGECLKTIIHADYPEQWPHLL 128
            W   E  ++  I+Q D + ++++++  +     L++ Q+   ++ I + D+PE+W  LL
Sbjct: 70  KWRGAE--DESPITQEDAEFIKENLIDLLVHSHHLVQNQIEAMIEIIANRDFPEKWTSLL 127

Query: 129 -DWVKH-NLQDQQVYGALFV---LRILSRKYEFKSDEERTPVYRIVEETFHHLLNIFNRL 183
              +++ N QD ++  A      L I   +Y    D+++  +Y IV E F  LL I   L
Sbjct: 128 PKSIQYINTQDVKLILAGLTSIQLGIKRFRYVTMGDKKKELLYTIVNEIFPLLLQILEFL 187

Query: 184 VQIVNPSLEVADLIKLICKIFWSSIYLEIPKQLLDPNVFNAWMILFLNVLERPV-PSEGE 242
            Q  + ++E A + K + KIF  +I+ EIP  L+ P VFN W+  F+ +++RP+ P E  
Sbjct: 188 SQ--HQTIESALMQKKVIKIFGYAIHFEIPDLLIQPEVFNKWLSQFVRIIQRPITPQENV 245

Query: 243 PADPEQRKSWGWWKVKKWTVHILNRLYTRFGD--LKLQNPENRAFAQMFQKNYAGKILEC 300
               + RK+  WW +K+ T  +LN L+ +         +   +A  ++F   Y+ ++++ 
Sbjct: 246 KHADDCRKNQ-WWLLKRTTAKLLNLLFRKSATSVRSTDHSSVKALNKLFMPVYSVEVMKV 304

Query: 301 ---HLNLLNRIRVGGYLPDRVTNLILQYLSNSISKNSMYNLLQPRLDVLLFEIVFPLMCF 357
               L+ L ++  G +  +R    +++Y S +I     Y  ++P L  L+ +++FP++CF
Sbjct: 305 FYEQLSTLEQLYKGVHY-ERYQQKLIEYFSFAIKYGVTYVAMKPWLSTLIQQVLFPIICF 363

Query: 358 NDNDQKLWDEDPHEYVRKGYDIIEDLYSPRTASMDFVSELVRKRGKENLQKFIQFIVGIF 417
           ND D +LW+ DP+E++R  ++      + R   ++F+ ++V KRG+ NL   + F +   
Sbjct: 364 NDRDAELWECDPNEFLRSQFESSMTFATARIEVLNFIIDVVGKRGRANLDMIMGFCIQSL 423

Query: 418 KRYDE-TPVEYKPYRQKDGALLAIGALCDKLKQTEPYKSELERMLVQHVFPEFSSPVGHL 476
            +Y+  T    K  R+KDG L+ I  L   LK    YKS LE+ML+ HVFPE SSP G L
Sbjct: 424 NKYNAATNASEKNPREKDGVLVIISVLSAYLKNISFYKSNLEQMLLLHVFPELSSPHGFL 483

Query: 477 RAKAAWVAGQYAHINFSDQNNFRKALHSVVSGLRDPELPVRVDSVFALRSFVEACRDLNE 536
           +A+A  +  ++ +I F+D   F  AL  ++  + D +LPVRV +  ++ + V A + ++E
Sbjct: 484 KARACSLFSEFYNIEFTDPVYFSNALKLILGLMSDNDLPVRVKAGTSICNLVRANQGVDE 543

Query: 537 IRPILPQLLDEFFKLMNEVENEDLVFTLETIVDKFGEEMAPYALGLCQNLAAAFWRCMNT 596
           +RPILPQLLD+ F L++E E+EDLV  +E+I+ +F  E+APYA+ LC+NL+  F R +  
Sbjct: 544 LRPILPQLLDKIFSLLSEAESEDLVIAIESIIQRFKHEIAPYAVNLCKNLSEQFLRLLEL 603

Query: 597 AEADEDADDPGALAAVGCLRAISTILESVSRLPHLFVQIEPTLLPIMRRMLTTDGQEVFE 656
            E+DE  +     A+  CL    T+L ++  +P +F  +E  ++PI++++ T+D     +
Sbjct: 604 EESDESGE--SGFASQECLGVYCTLLRALKDIPDVFNSLEQQIVPILQKLFTSDHMMYLD 661

Query: 657 EVLEIVSYMTFFSPTISLEMWSLWPLMMEALADWAIDFFPNILVPLDNYISRGTAHFLTC 716
           E L I++++T++  +IS  +WSL+P +M    + A DF  + + PLDNYIS GT +FL+ 
Sbjct: 662 EALRILTFVTYYPKSISPLVWSLFPQIMNLFDECACDFASSYVNPLDNYISYGTEYFLSN 721

Query: 717 KEPDYQQSLWSMVSSIMADKNLEDGDIEPAPKLIEVVFQNCKGQVDHWVEPYLRITVERL 776
           ++  Y + +++M   ++ D N +  D     K++E + Q  KG++D+ + P L +   RL
Sbjct: 722 QQ--YIEMVFNMYKKMVGDINQQPVDAGDCCKIMESLIQRAKGRIDYMIVPVLELACGRL 779

Query: 777 RRAEKSYLKC-----LLVQVIADALYYNSSLTLSILHKLGVATEVFNLWFQMLQQVKK 829
              +K+  K       L+++IA+ +YYN  ++   L    +   +F LWF  ++  ++
Sbjct: 780 LNTDKNNQKSKEFTVYLLEIIANCIYYNPLISTQYLESKNLVEPIFGLWFNRIKHFQR 837

May function in nuclear protein import.
Dictyostelium discoideum (taxid: 44689)

>sp\|Q9EPL8\|IPO7_MOUSE Importin-7 OS=Mus musculus GN=Ipo7 PE=1 SV=2	Back alignment and function description

>sp\|O95373\|IPO7_HUMAN Importin-7 OS=Homo sapiens GN=IPO7 PE=1 SV=1	Back alignment and function description

>sp\|O15397\|IPO8_HUMAN Importin-8 OS=Homo sapiens GN=IPO8 PE=1 SV=2	Back alignment and function description

>sp\|Q7TMY7\|IPO8_MOUSE Importin-8 OS=Mus musculus GN=Ipo8 PE=2 SV=3	Back alignment and function description

>sp\|O59809\|IMA3_SCHPO Probable importin c550.11 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPCC550.11 PE=3 SV=1	Back alignment and function description

>sp\|P46970\|NMD5_YEAST Nonsense-mediated mRNA decay protein 5 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=NMD5 PE=1 SV=2	Back alignment and function description

>sp\|Q04175\|SXM1_YEAST Importin beta SMX1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SXM1 PE=1 SV=1	Back alignment and function description

>sp\|Q9XZU1\|XPO2_DROME Exportin-2 OS=Drosophila melanogaster GN=Cas PE=2 SV=2	Back alignment and function description

>sp\|Q6GMY9\|XPO2_XENLA Exportin-2 OS=Xenopus laevis GN=cse1l PE=2 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		838
255573671		1032	Importin-7, putative [Ricinus communis]	1.0	0.812	0.922	0.0
225433707		1034	PREDICTED: probable importin-7 homolog [	1.0	0.810	0.920	0.0
224128892		1045	predicted protein [Populus trichocarpa]	1.0	0.801	0.909	0.0
296089630		1080	unnamed protein product [Vitis vinifera]	1.0	0.775	0.872	0.0
224069064		1058	predicted protein [Populus trichocarpa]	1.0	0.792	0.902	0.0
356568905		1032	PREDICTED: probable importin-7 homolog [	0.998	0.811	0.902	0.0
356526625		1032	PREDICTED: probable importin-7 homolog [	0.998	0.811	0.902	0.0
357502757		1035	Importin-7 [Medicago truncatula] gi\|3554	0.998	0.808	0.890	0.0
449466697		1029	PREDICTED: probable importin-7 homolog [	1.0	0.814	0.875	0.0
449508466		1029	PREDICTED: probable importin-7 homolog [	1.0	0.814	0.873	0.0

>gi\|255573671\|ref\|XP_002527757.1\| Importin-7, putative [Ricinus communis] gi\|223532844\|gb\|EEF34618.1\| Importin-7, putative [Ricinus communis]	Back alignment and taxonomy information

 Score = 1622 bits (4200), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 773/838 (92%), Positives = 806/838 (96%)

Query: 1   MDLPSLALILQGALSPNPEERKAAEHSLNQFQYTPQHLVRLLQIIVDNNCDLSVRQVASI 60
           MDLPSLAL LQ ALSPNP+ERKAAE +LNQ+QY PQHLVRLLQIIVDN+CD++VRQVASI
Sbjct: 1   MDLPSLALTLQAALSPNPDERKAAEQNLNQYQYAPQHLVRLLQIIVDNSCDMAVRQVASI 60

Query: 61  HFKNFIAKNWAPHEPNEQQKISQVDKDMVRDHILVFVAQVPPLLRVQLGECLKTIIHADY 120
           HFKNFIAKNWAPHEP+EQ KI Q DKDMVRDHILVFV QVPPLLRVQLGECLKTIIHADY
Sbjct: 61  HFKNFIAKNWAPHEPDEQSKILQSDKDMVRDHILVFVVQVPPLLRVQLGECLKTIIHADY 120

Query: 121 PEQWPHLLDWVKHNLQDQQVYGALFVLRILSRKYEFKSDEERTPVYRIVEETFHHLLNIF 180
           PEQWP LLDW+KHNLQDQQVYGALFVLRILSRKYEFKSDEERTPVYRIVEETF HLLNIF
Sbjct: 121 PEQWPRLLDWIKHNLQDQQVYGALFVLRILSRKYEFKSDEERTPVYRIVEETFPHLLNIF 180

Query: 181 NRLVQIVNPSLEVADLIKLICKIFWSSIYLEIPKQLLDPNVFNAWMILFLNVLERPVPSE 240
           NRLVQI NPSLEVADLIKLICKIFWSSIYLEIPKQL DPNVFNAWM+LFLNVLER VP E
Sbjct: 181 NRLVQIANPSLEVADLIKLICKIFWSSIYLEIPKQLFDPNVFNAWMVLFLNVLERSVPIE 240

Query: 241 GEPADPEQRKSWGWWKVKKWTVHILNRLYTRFGDLKLQNPENRAFAQMFQKNYAGKILEC 300
           G+P DPE RKSWGWWKVKKWTVHILNRLYTRFGDLKLQN ENRAFAQMFQK+YAGKILEC
Sbjct: 241 GQPVDPELRKSWGWWKVKKWTVHILNRLYTRFGDLKLQNQENRAFAQMFQKSYAGKILEC 300

Query: 301 HLNLLNRIRVGGYLPDRVTNLILQYLSNSISKNSMYNLLQPRLDVLLFEIVFPLMCFNDN 360
           HLNLLN IR+GGYLPDRVTNLILQYLSNSISKNSMY LLQPRLDVLLFEIVFPLMCF+DN
Sbjct: 301 HLNLLNMIRLGGYLPDRVTNLILQYLSNSISKNSMYTLLQPRLDVLLFEIVFPLMCFSDN 360

Query: 361 DQKLWDEDPHEYVRKGYDIIEDLYSPRTASMDFVSELVRKRGKENLQKFIQFIVGIFKRY 420
           DQKLWDEDPHEYVRKGYDIIEDLYSPRTASMDFVSELVRKRGKENLQKFIQFIV IFKRY
Sbjct: 361 DQKLWDEDPHEYVRKGYDIIEDLYSPRTASMDFVSELVRKRGKENLQKFIQFIVEIFKRY 420

Query: 421 DETPVEYKPYRQKDGALLAIGALCDKLKQTEPYKSELERMLVQHVFPEFSSPVGHLRAKA 480
           DE PVEYKPYRQKDGALLAIGALCDKLKQTEPYKSELERMLVQHVFPEFSSPVGHLRAKA
Sbjct: 421 DEAPVEYKPYRQKDGALLAIGALCDKLKQTEPYKSELERMLVQHVFPEFSSPVGHLRAKA 480

Query: 481 AWVAGQYAHINFSDQNNFRKALHSVVSGLRDPELPVRVDSVFALRSFVEACRDLNEIRPI 540
           AWVAGQYAHINFSDQ+NF KALHSVVSGLRDPELPVRVDSVFALRSFVEAC+DLNEIRPI
Sbjct: 481 AWVAGQYAHINFSDQSNFLKALHSVVSGLRDPELPVRVDSVFALRSFVEACKDLNEIRPI 540

Query: 541 LPQLLDEFFKLMNEVENEDLVFTLETIVDKFGEEMAPYALGLCQNLAAAFWRCMNTAEAD 600
           LPQLLDEFFKLMNEVENEDLVFTLETIVDKFGEEMAPYALGLCQNL AAFWRCMNTAEAD
Sbjct: 541 LPQLLDEFFKLMNEVENEDLVFTLETIVDKFGEEMAPYALGLCQNLGAAFWRCMNTAEAD 600

Query: 601 EDADDPGALAAVGCLRAISTILESVSRLPHLFVQIEPTLLPIMRRMLTTDGQEVFEEVLE 660
           ++ADDPGALAAVGCLRAISTILESVSRLPHLFVQIEP LLPIMRRMLTTDGQEVFEEVLE
Sbjct: 601 DEADDPGALAAVGCLRAISTILESVSRLPHLFVQIEPILLPIMRRMLTTDGQEVFEEVLE 660

Query: 661 IVSYMTFFSPTISLEMWSLWPLMMEALADWAIDFFPNILVPLDNYISRGTAHFLTCKEPD 720
           IVSYMTFFSP+ISL+MW+LWPLMMEALA+WAIDFFPNILVPLDNYISRGTAHFL CK+PD
Sbjct: 661 IVSYMTFFSPSISLDMWTLWPLMMEALAEWAIDFFPNILVPLDNYISRGTAHFLACKDPD 720

Query: 721 YQQSLWSMVSSIMADKNLEDGDIEPAPKLIEVVFQNCKGQVDHWVEPYLRITVERLRRAE 780
           YQQSLW M+SSI+AD+NLED DIEPAPKLIEVVFQNC+GQVD WVEPYLR+TVERL RAE
Sbjct: 721 YQQSLWKMISSILADRNLEDNDIEPAPKLIEVVFQNCRGQVDQWVEPYLRVTVERLNRAE 780

Query: 781 KSYLKCLLVQVIADALYYNSSLTLSILHKLGVATEVFNLWFQMLQQVKKNGLRVNFKR 838
           KSYLKCLL+QVIADALYYN++LTL IL KLGVATE+FNLWFQMLQQVKK+G+R NFKR
Sbjct: 781 KSYLKCLLMQVIADALYYNAALTLGILQKLGVATEIFNLWFQMLQQVKKSGVRANFKR 838

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|225433707\|ref\|XP_002268048.1\| PREDICTED: probable importin-7 homolog [Vitis vinifera]	Back alignment and taxonomy information

>gi\|224128892\|ref\|XP_002320447.1\| predicted protein [Populus trichocarpa] gi\|222861220\|gb\|EEE98762.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|296089630\|emb\|CBI39449.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

>gi\|224069064\|ref\|XP_002302891.1\| predicted protein [Populus trichocarpa] gi\|222844617\|gb\|EEE82164.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|356568905\|ref\|XP_003552648.1\| PREDICTED: probable importin-7 homolog [Glycine max]	Back alignment and taxonomy information

>gi\|356526625\|ref\|XP_003531917.1\| PREDICTED: probable importin-7 homolog [Glycine max]	Back alignment and taxonomy information

>gi\|357502757\|ref\|XP_003621667.1\| Importin-7 [Medicago truncatula] gi\|355496682\|gb\|AES77885.1\| Importin-7 [Medicago truncatula]	Back alignment and taxonomy information

>gi\|449466697\|ref\|XP_004151062.1\| PREDICTED: probable importin-7 homolog [Cucumis sativus]	Back alignment and taxonomy information

>gi\|449508466\|ref\|XP_004163320.1\| PREDICTED: probable importin-7 homolog [Cucumis sativus]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		838
TAIR\|locus:2065939		1040	SAD2 "AT2G31660" [Arabidopsis	1.0	0.805	0.790	0.0
TAIR\|locus:2077715		1030	AT3G59020 "AT3G59020" [Arabido	0.998	0.812	0.779	0.0
DICTYBASE\|DDB_G0269860		1065	DDB_G0269860 "putative importi	0.966	0.760	0.311	5.2e-119
FB\|FBgn0026252		1049	msk "moleskin" [Drosophila mel	0.941	0.752	0.307	5.9e-112
UNIPROTKB\|E2R703		1036	IPO8 "Uncharacterized protein"	0.943	0.763	0.311	1e-107
UNIPROTKB\|E1BGE5		1038	IPO7 "Uncharacterized protein"	0.945	0.763	0.312	1.3e-107
UNIPROTKB\|E2R2C4		1038	IPO7 "Uncharacterized protein"	0.945	0.763	0.312	1.3e-107
UNIPROTKB\|F6X4J2		1038	IPO7 "Uncharacterized protein"	0.945	0.763	0.312	1.3e-107
UNIPROTKB\|O95373		1038	IPO7 "Importin-7" [Homo sapien	0.945	0.763	0.312	1.3e-107
MGI\|MGI:2152414		1038	Ipo7 "importin 7" [Mus musculu	0.945	0.763	0.312	1.3e-107

TAIR\|locus:2065939 SAD2 "AT2G31660" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 3560 (1258.2 bits), Expect = 0., P = 0.
 Identities = 666/842 (79%), Positives = 753/842 (89%)

Query:     1 MDLPSLALILQ-GALSPNPEERKAAEHSLNQFQYTPQHLVRLLQIIVDNNCDLSVRQVAS 59
             MDL SLALIL+  ALSP P+ERK +E  LNQ ++TPQHLVRLLQI VD NCD++VRQ+AS
Sbjct:     1 MDLHSLALILRTAALSPIPDERKVSEQQLNQLEHTPQHLVRLLQIAVDGNCDMAVRQIAS 60

Query:    60 IHFKNFIAKNWAPHE--PN-EQQKISQVDKDMVRDHILVFVAQVPPLLRVQLGECLKTII 116
             I FKN IAKNW+P +  P   QQ+I + DK++VRD+ILV+V QVP LLR QLGE LKTII
Sbjct:    61 IQFKNLIAKNWSPEDCGPAVRQQQIFESDKELVRDNILVYVTQVPTLLRSQLGESLKTII 120

Query:   117 HADYPEQWPHLLDWVKHNLQDQQVYGALFVLRILSRKYEFKSDEERTPVYRIVEETFHHL 176
             +ADYPEQWP LLDWVK+NLQ+QQ+YGALFVLRILSRKYEFKSDEERTPV RIVEETF  L
Sbjct:   121 YADYPEQWPRLLDWVKYNLQNQQIYGALFVLRILSRKYEFKSDEERTPVSRIVEETFPQL 180

Query:   177 LNIFNRLVQIVNPSLEVADLIKLICKIFWSSIYLEIPKQLLDPNVFNAWMILFLNVLERP 236
             L IFN L+QI NPSLE+A+L+KLICKIFWSSIYLE+P+QL D NVFNAWM+LFL+V ERP
Sbjct:   181 LTIFNGLIQIPNPSLEIAELMKLICKIFWSSIYLELPRQLFDLNVFNAWMVLFLSVSERP 240

Query:   237 VPSEGEPADPEQRKSWGWWKVKKWTVHILNRLYTRFGDLKLQNPENRAFAQMFQKNYAGK 296
             VP EG+P DPE RKSWGWWKVKKWTVHILNRLY+RFGD KLQ+PEN+ FAQMFQKNYAG+
Sbjct:   241 VPVEGQPMDPELRKSWGWWKVKKWTVHILNRLYSRFGDPKLQSPENKPFAQMFQKNYAGR 300

Query:   297 ILECHLNLLNRIRVGGYLPDRVTNLILQYLSNSISKNSMYNLLQPRLDVLLFEIVFPLMC 356
             ILE HLN LN IRVGGYLPDRV NL+LQYLSNSISKNSMY LL PRLDVLLFEIVFPLMC
Sbjct:   301 ILEGHLNFLNTIRVGGYLPDRVINLLLQYLSNSISKNSMYKLLLPRLDVLLFEIVFPLMC 360

Query:   357 FNDNDQKLWDEDPHEYVRKGYDIIEDLYSPRTASMDFVSELVRKRGKENLQKFIQFIVGI 416
             FNDNDQKLW+EDPHEYVRKGY+IIEDLYSPRTASMDFV+ELVRKRGKENL KF++F+V I
Sbjct:   361 FNDNDQKLWEEDPHEYVRKGYNIIEDLYSPRTASMDFVNELVRKRGKENLPKFVKFVVEI 420

Query:   417 FKRYDETPVEYKPYRQKDGALLAIGALCDKLKQTEPYKSELERMLVQHVFPEFSSPVGHL 476
             F  Y++  VE KPYRQKDGA+LA+GALCDKLKQT+PYKS+LE MLVQH+FP+F+SPVGHL
Sbjct:   421 FLSYEKATVEEKPYRQKDGAMLAVGALCDKLKQTDPYKSQLELMLVQHIFPDFNSPVGHL 480

Query:   477 RAKAAWVAGQYAHINFSDQNNFRKALHSVVSGLRDPELPVRVDSVFALRSFVEACRDLNE 536
             RAKAAWVAGQYAHINFSDQNNFRKALHSVVSGLRDP+LPVRVDSVFALRSFVEAC+DLNE
Sbjct:   481 RAKAAWVAGQYAHINFSDQNNFRKALHSVVSGLRDPDLPVRVDSVFALRSFVEACKDLNE 540

Query:   537 IRPILPQLLDEFFKLMNEVENEDLVFTLETIVDKFGEEMAPYALGLCQNLAAAFWRCMNT 596
             IRPILPQLLDEFFKLMNEVENEDLVFTLETIVDKFGEEMAP+A GLCQNLAAAFWRC+NT
Sbjct:   541 IRPILPQLLDEFFKLMNEVENEDLVFTLETIVDKFGEEMAPFAFGLCQNLAAAFWRCLNT 600

Query:   597 XXXXXXXXXXXXXXXVGCLRAISTILESVSRLPHLFVQIEPTLLPIMRRMLTTDGQEVFE 656
                            VGCLRAISTILESVS LP LFV+IEPT+LPIM++MLTTDGQEVFE
Sbjct:   601 SEANDDSDDMGALAAVGCLRAISTILESVSSLPQLFVEIEPTILPIMQKMLTTDGQEVFE 660

Query:   657 EVLEIVSYMTFFSPTISLEMWSLWPLMMEALADWAIDFFPNILVPLDNYISRGTAHFLTC 716
             EVLEI SYMTF+SP+ISL++WSLWPLM+EAL DW IDFFPNILVP+DN+ISRGTAHFLTC
Sbjct:   661 EVLEIASYMTFYSPSISLDIWSLWPLMVEALVDWGIDFFPNILVPMDNFISRGTAHFLTC 720

Query:   717 KEPDYQQSLWSMVSSIMADKNLEDGDIEPAPKLIEVVFQNCKGQVDHWVEPYLRITVERL 776
             KEPDYQQSL++++S++M D+N+ED +IE APKLIEVVFQNCKGQVD WVEPYLR+TV+RL
Sbjct:   721 KEPDYQQSLYNVLSTLMTDRNIEDSEIESAPKLIEVVFQNCKGQVDQWVEPYLRLTVDRL 780

Query:   777 RRAEKSYLKCLLVQVIADALYYNSSLTLSILHKLGVATEVFNLWFQMLQQVKKNGLRVNF 836
             +RAE SY+K LL+QV+A+ LYYN  LTL +LH  G+A++VF+LWFQMLQQ +K+GL  NF
Sbjct:   781 QRAETSYVKSLLIQVVANMLYYNPGLTLGVLHNTGLASKVFDLWFQMLQQKRKSGLPANF 840

Query:   837 KR 838
             KR
Sbjct:   841 KR 842

GO:0000059 "protein import into nucleus, docking" evidence=ISS

GO:0005634 "nucleus" evidence=ISS;IDA

GO:0005643 "nuclear pore" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISS;IDA

GO:0008565 "protein transporter activity" evidence=IEA;ISS

GO:0006606 "protein import into nucleus" evidence=RCA;IDA

GO:0005829 "cytosol" evidence=IDA

GO:0035280 "miRNA loading onto RISC involved in gene silencing by miRNA" evidence=IMP

GO:0006406 "mRNA export from nucleus" evidence=RCA

GO:0009165 "nucleotide biosynthetic process" evidence=RCA

TAIR\|locus:2077715 AT3G59020 "AT3G59020" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

DICTYBASE\|DDB_G0269860 DDB_G0269860 "putative importin 7" [Dictyostelium discoideum (taxid:44689)]	Back alignment and assigned GO terms

FB\|FBgn0026252 msk "moleskin" [Drosophila melanogaster (taxid:7227)]	Back alignment and assigned GO terms

UNIPROTKB\|E2R703 IPO8 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]	Back alignment and assigned GO terms

UNIPROTKB\|E1BGE5 IPO7 "Uncharacterized protein" [Bos taurus (taxid:9913)]	Back alignment and assigned GO terms

UNIPROTKB\|E2R2C4 IPO7 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]	Back alignment and assigned GO terms

UNIPROTKB\|F6X4J2 IPO7 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]	Back alignment and assigned GO terms

UNIPROTKB\|O95373 IPO7 "Importin-7" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

MGI\|MGI:2152414 Ipo7 "importin 7" [Mus musculus (taxid:10090)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		838
COG5656		970	COG5656, SXM1, Importin, protein involved in nucle	1e-108
COG5657		947	COG5657, CSE1, CAS/CSE protein involved in chromos	5e-16
pfam03810		71	pfam03810, IBN_N, Importin-beta N-terminal domain	5e-13
smart00913		67	smart00913, IBN_N, Importin-beta N-terminal domain	4e-10

>gnl\|CDD\|227943 COG5656, SXM1, Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

 Score =  354 bits (909), Expect = e-108
 Identities = 197/826 (23%), Positives = 360/826 (43%), Gaps = 31/826 (3%)

Query: 14  LSPNPEERKAAEHSLNQFQYTPQHLVRLLQIIVDNNCDLSVRQVASIHFKNFIAKNW--- 70
           L  +  +R  AE  L   +  P  ++ LL I   +  DL+V+  A+I+FKN I ++W   
Sbjct: 13  LDADAGKRTIAEAMLKDLEKQPGFVMALLHICSKDEGDLNVKLSAAIYFKNKIIRSWSSK 72

Query: 71  --APHEPNEQQKISQVDKDMVRDHILVFVAQVPPLLRVQLGECLKTIIHADYPEQWPHLL 128
                + +E+ +     K  + ++IL      P + R  L   L  I   D P     L 
Sbjct: 73  RDDGIKADEKSEA----KKYLIENILDVFLYSPEVTRTALNAILVNIFSEDKPSDLWGLF 128

Query: 129 DWVK---HNLQDQQVYGALFVLRILSRKYEFKSDEERTPVYRIVEETFHHLLNIFNRLVQ 185
                   + +   VY  L  L  L + Y +K ++E+  +  ++   F  L  +   L  
Sbjct: 129 PKAANLLRSSEANHVYTGLLCLEELFKAYRWKYNDEQVDILMLITALFPILEKVGGNLES 188

Query: 186 IVNPSLEVADLIKLICKIFWSSIYLEIPKQLLDPNVFNAWMILFLNVLERPVPSEGEPAD 245
             N      + + LI K F S  Y  +P  L     F++W  L L +L++P+P+E    D
Sbjct: 189 QGN--YGSVETLMLILKSFKSVCYYSLPDFLSAIETFSSWFQLSLRILQKPLPNEVLSLD 246

Query: 246 PEQRKSWGWWKVKKWTVHILNRLYTRFGDLKLQNPENRAFAQMFQKNYAGKILECHLNLL 305
           PE R    W K KKW  + L R + R+     +     +F   F       IL      +
Sbjct: 247 PEVRSLSKWVKCKKWAAYNLYRSFQRYIKKSYKKSY-LSFYITFM-TRVPMILATFFKQI 304

Query: 306 NRIRVGG-YLPDRVTNLILQYLSNSISKNSMYNLLQPRLDVLLFEIVFPLMCFNDNDQKL 364
                G  +L D     I  ++   +  +  + L++P L  ++  ++FPL+C ++ +++L
Sbjct: 305 EEWGQGQLWLSDIELYFIDFFVELCVDADQTWRLMEPHLQYIISGVIFPLLCLSEEEEEL 364

Query: 365 WDEDPHEYVRKGYDIIEDLYSPRTASMDFVSELVRKRGKENLQKFIQFIVGIFKRYDETP 424
           ++ DP EY+R+ YD  ++  SP  A++ F+     KR +E  Q  + F++ I  +   TP
Sbjct: 365 FENDPDEYIRRYYDFFDNGLSPDLAALFFLIISKSKRKEETFQGILSFLLSILGQSAATP 424

Query: 425 VEYKPYRQKDGALLAIGALCDKLKQTEPYKSELERMLVQHVFPEFSSPVGHLRAKAAWVA 484
                 RQ +GAL  + ++   + +  P  + +E  +V HV P F S  G L+++A    
Sbjct: 425 SNIDNARQAEGALRLLASIKSFITKMSPAANVMEYFIVNHVIPAFRSNYGFLKSRACEFI 484

Query: 485 GQYAHINFSDQNNFRKALHSVVSGLRDPELPVRVDSVFALRSFVEACRDLNEIRPILPQL 544
                 +F D     +A  +  + L++  LPV +++  AL+ F+   +   +    +P+ 
Sbjct: 485 STIE-EDFKDNGILLEAYENTHNCLKNNHLPVMIEAALALQFFIFNEQSHEKFSAHVPET 543

Query: 545 LDEFFKLMNEVENEDLVFTLETIVDKFGEEMAPYALGLCQNLAAAFWRC-----MNTAEA 599
           +++   L N  E + L   +E+ V+ F EE++P+A  L  +L   F +       N+++ 
Sbjct: 544 MEKLLSLSNTFEIDPLSMVMESFVEYFSEELSPFAPELAGSLVRQFLKIAQSLLENSSDT 603

Query: 600 DEDADDPGALAAVGCLRAISTILESVSRLPHLFVQIEPTLLPIMRRMLTTDGQEVFEEVL 659
               DD   +AA G LR I +++ S+   P +   +E +L P++  +L  +  + ++E L
Sbjct: 604 SSVVDDK-QMAASGILRTIESMILSLENRPLVLKYLEVSLYPVISFILKNEISDFYQEAL 662

Query: 660 EIVSYMTFFSPTISLEMWSLWPLMMEALADW-AIDFFPNILVPLDNYISRGTAHFLTCKE 718
           +I+   TF S  I   MW ++ L++  L D     +   +   LDN+I+ G   F+    
Sbjct: 663 DILDGYTFMSKEIEPIMWGIFELLLNLLIDEITAVYSEEVADALDNFITYGKTEFM--DA 720

Query: 719 PDYQQSLWSMVSSIMADKNLEDGDIEPAPKLIEVVFQNCKGQVDHWVEPYLR---ITVER 775
             Y      +    +  +     D     ++IE +  N + ++     P       +  +
Sbjct: 721 GIYGSICSEISKLCLCSEENFLEDFIGVCRIIESLILNIRDELLSQYLPLFISVAGSGLK 780

Query: 776 LRRAEKSYLKCLLVQVIADALYYNSSLTLSILHKLGVATEVFNLWF 821
           +           L ++I + L      TL IL + G     F  WF
Sbjct: 781 MIDELGPASVYAL-ELIINNLILRPKETLQILEEQGYLQSFFEKWF 825

Length = 970

>gnl\|CDD\|227944 COG5657, CSE1, CAS/CSE protein involved in chromosome segregation [Cell division and chromosome partitioning]	Back alignment and domain information

>gnl\|CDD\|217743 pfam03810, IBN_N, Importin-beta N-terminal domain	Back alignment and domain information

>gnl\|CDD\|197981 smart00913, IBN_N, Importin-beta N-terminal domain	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		838
KOG1991		1010	consensus Nuclear transport receptor RANBP7/RANBP8	100.0
COG5656		970	SXM1 Importin, protein involved in nuclear import	100.0
KOG1992		960	consensus Nuclear export receptor CSE1/CAS (import	100.0
KOG1993		978	consensus Nuclear transport receptor KAP120 (impor	100.0
KOG2274		1005	consensus Predicted importin 9 [Intracellular traf	100.0
KOG2023		885	consensus Nuclear transport receptor Karyopherin-b	100.0
COG5657		947	CSE1 CAS/CSE protein involved in chromosome segreg	100.0
KOG2171		1075	consensus Karyopherin (importin) beta 3 [Nuclear s	100.0
PF08506		370	Cse1: Cse1; InterPro: IPR013713 The exchange of ma	100.0
KOG1241		859	consensus Karyopherin (importin) beta 1 [Nuclear s	100.0
COG5215		858	KAP95 Karyopherin (importin) beta [Intracellular t	100.0
PF03378		435	CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: I	99.95
KOG2022		982	consensus Nuclear transport receptor LGL2 (importi	99.94
COG5101		1053	CRM1 Importin beta-related nuclear transport recep	99.92
KOG2021		980	consensus Nuclear mRNA export factor receptor LOS1	99.75
KOG2081		559	consensus Nuclear transport regulator [Intracellul	99.63
KOG2171		1075	consensus Karyopherin (importin) beta 3 [Nuclear s	99.59
KOG2020		1041	consensus Nuclear transport receptor CRM1/MSN5 (im	99.53
KOG1241		859	consensus Karyopherin (importin) beta 1 [Nuclear s	99.42
PF03810		77	IBN_N: Importin-beta N-terminal domain; InterPro:	99.4
KOG2023		885	consensus Nuclear transport receptor Karyopherin-b	99.35
COG5215		858	KAP95 Karyopherin (importin) beta [Intracellular t	99.14
KOG1824		1233	consensus TATA-binding protein-interacting protein	99.12
KOG1824		1233	consensus TATA-binding protein-interacting protein	98.8
PF08389		148	Xpo1: Exportin 1-like protein; InterPro: IPR013598	98.77
KOG1991		1010	consensus Nuclear transport receptor RANBP7/RANBP8	98.46
KOG0213		1172	consensus Splicing factor 3b, subunit 1 [RNA proce	98.31
KOG0915		1702	consensus Uncharacterized conserved protein [Funct	98.29
KOG0212		675	consensus Uncharacterized conserved protein [Funct	98.23
PF01602		526	Adaptin_N: Adaptin N terminal region; InterPro: IP	98.12
KOG1242		569	consensus Protein containing adaptin N-terminal re	97.92
PTZ00429		746	beta-adaptin; Provisional	97.8
PLN03200		2102	cellulose synthase-interactive protein; Provisiona	97.78
PF01602		526	Adaptin_N: Adaptin N terminal region; InterPro: IP	97.77
KOG1248		1176	consensus Uncharacterized conserved protein [Funct	97.75
PF10508		503	Proteasom_PSMB: Proteasome non-ATPase 26S subunit;	97.74
KOG1020		1692	consensus Sister chromatid cohesion protein SCC2/N	97.64
PLN03200		2102	cellulose synthase-interactive protein; Provisiona	97.61
PF12755		97	Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region	97.53
PTZ00429		746	beta-adaptin; Provisional	97.51
KOG0166		514	consensus Karyopherin (importin) alpha [Intracellu	97.47
KOG0213		1172	consensus Splicing factor 3b, subunit 1 [RNA proce	97.32
KOG1059		877	consensus Vesicle coat complex AP-3, delta subunit	97.29
PF12755		97	Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region	97.23
KOG0166		514	consensus Karyopherin (importin) alpha [Intracellu	97.19
KOG0212		675	consensus Uncharacterized conserved protein [Funct	97.17
PF05918		556	API5: Apoptosis inhibitory protein 5 (API5); Inter	97.07
KOG1410		1082	consensus Nuclear transport receptor RanBP16 (impo	97.03
COG5181		975	HSH155 U2 snRNP spliceosome subunit [RNA processin	96.99
PF13513		55	HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O	96.87
PF10508		503	Proteasom_PSMB: Proteasome non-ATPase 26S subunit;	96.82
KOG1242		569	consensus Protein containing adaptin N-terminal re	96.8
PF03378		435	CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: I	96.78
PF12719		298	Cnd3: Nuclear condensing complex subunits, C-term	96.72
KOG1060		968	consensus Vesicle coat complex AP-3, beta subunit	96.72
PF12717		178	Cnd1: non-SMC mitotic condensation complex subunit	96.71
KOG1992		960	consensus Nuclear export receptor CSE1/CAS (import	96.7
COG5181		975	HSH155 U2 snRNP spliceosome subunit [RNA processin	96.68
PF12460		415	MMS19_C: RNAPII transcription regulator C-terminal	96.54
PF08167		165	RIX1: rRNA processing/ribosome biogenesis	96.43
KOG1943		1133	consensus Beta-tubulin folding cofactor D [Posttra	96.37
KOG1061		734	consensus Vesicle coat complex AP-1/AP-2/AP-4, bet	96.3
KOG2022		982	consensus Nuclear transport receptor LGL2 (importi	96.18
COG5096		757	Vesicle coat complex, various subunits [Intracellu	96.15
COG5064		526	SRP1 Karyopherin (importin) alpha [Intracellular t	96.03
cd00020		120	ARM Armadillo/beta-catenin-like repeats. An approx	95.99
KOG1248		1176	consensus Uncharacterized conserved protein [Funct	95.91
KOG0915		1702	consensus Uncharacterized conserved protein [Funct	95.68
PF12348		228	CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi	95.61
KOG1062		866	consensus Vesicle coat complex AP-1, gamma subunit	95.5
KOG1240		1431	consensus Protein kinase containing WD40 repeats [	95.47
KOG1993		978	consensus Nuclear transport receptor KAP120 (impor	95.44
PF13513		55	HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O	95.37
PRK09687		280	putative lyase; Provisional	95.26
PF08767		319	CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1	95.23
PF02985		31	HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re	95.1
KOG1058		948	consensus Vesicle coat complex COPI, beta subunit	95.07
KOG0211		759	consensus Protein phosphatase 2A regulatory subuni	95.05
PF12348		228	CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi	94.98
PRK09687		280	putative lyase; Provisional	94.91
PF04826		254	Arm_2: Armadillo-like; InterPro: IPR006911 This en	94.86
KOG1062		866	consensus Vesicle coat complex AP-1, gamma subunit	94.82
PF14500		262	MMS19_N: Dos2-interacting transcription regulator	94.78
PF12717		178	Cnd1: non-SMC mitotic condensation complex subunit	94.68
COG5240		898	SEC21 Vesicle coat complex COPI, gamma subunit [In	94.53
PF05804		708	KAP: Kinesin-associated protein (KAP)	94.47
KOG1058		948	consensus Vesicle coat complex COPI, beta subunit	94.39
KOG2025		892	consensus Chromosome condensation complex Condensi	93.67
PF13646		88	HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I	93.59
KOG4224		550	consensus Armadillo repeat protein VAC8 required f	93.17
cd00020		120	ARM Armadillo/beta-catenin-like repeats. An approx	93.16
KOG1240		1431	consensus Protein kinase containing WD40 repeats [	92.84
PF12460		415	MMS19_C: RNAPII transcription regulator C-terminal	92.63
PF10521		282	DUF2454: Protein of unknown function (DUF2454); In	92.48
KOG0946		970	consensus ER-Golgi vesicle-tethering protein p115	92.43
PF05004		309	IFRD: Interferon-related developmental regulator (	92.28
KOG1059		877	consensus Vesicle coat complex AP-3, delta subunit	92.06
PF10363		92	DUF2435: Protein of unknown function (DUF2435)	91.95
PF13646		88	HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I	91.54
COG5096		757	Vesicle coat complex, various subunits [Intracellu	91.47
PF10274		183	ParcG: Parkin co-regulated protein; InterPro: IPR0	91.43
PF05004		309	IFRD: Interferon-related developmental regulator (	91.25
KOG0168		1051	consensus Putative ubiquitin fusion degradation pr	91.11
KOG4653		982	consensus Uncharacterized conserved protein [Funct	90.87
KOG4653		982	consensus Uncharacterized conserved protein [Funct	90.83
PF04826		254	Arm_2: Armadillo-like; InterPro: IPR006911 This en	90.74
KOG1020		1692	consensus Sister chromatid cohesion protein SCC2/N	90.53
KOG1060		968	consensus Vesicle coat complex AP-3, beta subunit	90.47
KOG1078		865	consensus Vesicle coat complex COPI, gamma subunit	89.28
PF12719		298	Cnd3: Nuclear condensing complex subunits, C-term	88.83
KOG2160		342	consensus Armadillo/beta-catenin-like repeat-conta	88.47
KOG1077		938	consensus Vesicle coat complex AP-2, alpha subunit	88.07
PF05918		556	API5: Apoptosis inhibitory protein 5 (API5); Inter	87.96
PF08167		165	RIX1: rRNA processing/ribosome biogenesis	87.94
PF05536		543	Neurochondrin: Neurochondrin	86.24
COG5240		898	SEC21 Vesicle coat complex COPI, gamma subunit [In	85.97
PF04510		174	DUF577: Family of unknown function (DUF577); Inter	85.88
KOG2956		516	consensus CLIP-associating protein [General functi	85.33
PF10363		92	DUF2435: Protein of unknown function (DUF2435)	85.06
PRK13800		897	putative oxidoreductase/HEAT repeat-containing pro	84.97
KOG1967		1030	consensus DNA repair/transcription protein Mms19 [	84.76
PF10521		282	DUF2454: Protein of unknown function (DUF2454); In	84.02
PF01603		409	B56: Protein phosphatase 2A regulatory B subunit (	84.02
PF08767		319	CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1	83.11
PF08161		198	NUC173: NUC173 domain; InterPro: IPR012978 This is	82.6
PF02985		31	HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re	82.56
PF01603		409	B56: Protein phosphatase 2A regulatory B subunit (	82.09
PF14500		262	MMS19_N: Dos2-interacting transcription regulator	81.86
KOG1061		734	consensus Vesicle coat complex AP-1/AP-2/AP-4, bet	81.61
KOG2213		460	consensus Apoptosis inhibitor 5/fibroblast growth	81.38
PF08506		370	Cse1: Cse1; InterPro: IPR013713 The exchange of ma	80.88
PF04821		266	TIMELESS: Timeless protein; InterPro: IPR006906 Th	80.64

>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

Probab=100.00  E-value=3e-137  Score=1116.12  Aligned_cols=831  Identities=47%  Similarity=0.811  Sum_probs=798.4

Q ss_pred             CChHHHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCChHHHHHHHHHhcCcChhhHHHHHHHHHHhhhhcCCCCCC-CCCC
Q 003214            1 MDLPSLALILQGALSPNPEERKAAEHSLNQFQYTPQHLVRLLQIIVDNNCDLSVRQVASIHFKNFIAKNWAPHEP-NEQQ   79 (838)
Q Consensus         1 MD~~~l~~~L~~~ls~d~~~r~~Ae~~L~~~~~~p~f~~~Ll~i~~~~~~~~~iR~~Aai~lKn~i~~~W~~~~~-~~~~   79 (838)
                      ||.+.+.+++.+|++||++.|+.||++|+|+++.|||..+|++|+.+.+.+.+|||+|||||||+|.++|+.++. ..+.
T Consensus         1 md~~~l~~~~~~T~d~d~~~R~~AE~~L~q~~K~pgFv~~lLqIi~~d~~~l~vrqaaaIYlKN~I~~~W~~~~~~g~~~   80 (1010)
T KOG1991|consen    1 MDLQSLLQIFRATIDSDAKERKAAEQQLNQLEKQPGFVSSLLQIIMDDGVPLPVRQAAAIYLKNKITKSWSSHEAPGRPF   80 (1010)
T ss_pred             CChHHHHHHHHHhcCCChHHHHHHHHHHHHhhcCCcHHHHHHHHHHccCCchhHHHHHHHHHHHHHHhcCCccCCCCCcC
Confidence            999999999999999999999999999999999999999999999999999999999999999999999998742 1356


Q ss_pred             CCChhhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhCCCCChhHHHHHHHHhhhh---hHHHHHHHHHHHHHHccc
Q 003214           80 KISQVDKDMVRDHILVFVAQVPPLLRVQLGECLKTIIHADYPEQWPHLLDWVKHNLQDQ---QVYGALFVLRILSRKYEF  156 (838)
Q Consensus        80 ~l~~e~k~~ir~~ll~~l~~~~~~i~~~~~~~i~~Ia~~d~p~~Wp~ll~~l~~~l~s~---~~~~~L~~L~~i~~~~~~  156 (838)
                      .+++++|+.||++++..+.+.+..+|.++..|+..|...|||++||++++.+-..++++   .+++||.||++++|.|+|
T Consensus        81 ~I~e~dk~~irenIl~~iv~~p~~iRvql~~~l~~Ii~~D~p~~Wp~l~d~i~~~Lqs~~~~~vy~aLl~l~qL~k~ye~  160 (1010)
T KOG1991|consen   81 GIPEEDKAVIRENILETIVQVPELIRVQLTACLNTIIKADYPEQWPGLLDKIKNLLQSQDANHVYGALLCLYQLFKTYEW  160 (1010)
T ss_pred             CCChHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhcCCcccchhHHHHHHHHhcCcchhhHHHHHHHHHHHHHHHhh
Confidence            79999999999999999999999999999999999999999999999999999999998   589999999999999999


Q ss_pred             CCccCcchHHHHHHHHhHHHHHHHHHHhcccCCchhHHHHHHHHHHHhHHhhhhcCCcccCChhhHHHHHHHHHHHhcCC
Q 003214          157 KSDEERTPVYRIVEETFHHLLNIFNRLVQIVNPSLEVADLIKLICKIFWSSIYLEIPKQLLDPNVFNAWMILFLNVLERP  236 (838)
Q Consensus       157 ~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~lki~~~~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~  236 (838)
                      ++++.|+++..+++.+||.+++++..++..++  .++.++.++++|||++++++++|..+.+.+.|..||++|+++++++
T Consensus       161 k~~eeR~~l~~~v~~~fP~il~~~~~ll~~~s--~~s~el~klIlKifks~~~~~LP~~L~~~~~f~~W~~l~l~i~~rp  238 (1010)
T KOG1991|consen  161 KKDEERQPLGEAVEELFPDILQIFNGLLSQES--YQSVELQKLILKIFKSLIYYELPLELSAPETFTSWMELFLSILNRP  238 (1010)
T ss_pred             ccccccccHHHHHHHHHHHHHHHHHhhccccc--hHHHHHHHHHHHHHHHHHHHhCCHHhhCchhHHHHHHHHHHHHcCC
Confidence            99999999999999999999999999987663  5688999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCChhhhhhccchhHHHHHHHHHHHHHHHhCCCCCCChhhHHHHHHHHHHhHHHHHHHHHHHHHhhhCCcccCH
Q 003214          237 VPSEGEPADPEQRKSWGWWKVKKWTVHILNRLYTRFGDLKLQNPENRAFAQMFQKNYAGKILECHLNLLNRIRVGGYLPD  316 (838)
Q Consensus       237 ~~~~~~~~d~~~~~~~~~~k~kk~~~~~l~~l~~~~~~~~~~~~~~~~f~~~f~~~~~~~~~~~~~~~l~~~~~~~~~~~  316 (838)
                      +|.+.++.|++.|.+++|||+|||++++++|+++|||+|+++.+++++|++.|..++++.+++.++++++..+.+.|+++
T Consensus       239 vP~E~l~~d~e~R~~~~wwK~KKWa~~~L~Rlf~Ryg~~~~~~~~y~~Fa~~f~~n~~~~ile~~lk~l~~~~~~~yls~  318 (1010)
T KOG1991|consen  239 VPVEVLSLDPEDRSSWPWWKCKKWALHILNRLFERYGSPSLVVPEYKEFAQMFLKNFAQGILEVFLKILEQWRQQLYLSD  318 (1010)
T ss_pred             CChhcccCChhhcccccchhhHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCH
Confidence            99888888999999999999999999999999999999998889999999999999999999999999999888889999


Q ss_pred             HHHHHHHHHHHhhcCcchhhhhchhhHHHHHHHhHhccccCChhhHhhhhcCHHHHHHHhcccccccCCHHHHHHHHHHH
Q 003214          317 RVTNLILQYLSNSISKNSMYNLLQPRLDVLLFEIVFPLMCFNDNDQKLWDEDPHEYVRKGYDIIEDLYSPRTASMDFVSE  396 (838)
Q Consensus       317 ~~~~~~l~fl~~~~~~~~~~~~~~~~l~~li~~~i~~~l~~~~~d~e~w~~Dp~efi~~~~d~~~d~~s~r~~a~~ll~~  396 (838)
                      +++.+++.|+..|++.+.+|+.++||+..++..+|+|.||++++|+|.|++||.||+|+..|.++|++||+.||.+++..
T Consensus       319 rvl~~~l~fl~~~Vs~~~twkll~PHl~~ii~~vIFPlmc~~d~deelwe~DP~EYiR~~~Di~ed~~sp~~Aa~~~l~~  398 (1010)
T KOG1991|consen  319 RVLYYLLNFLEQCVSHASTWKLLKPHLQVIIQDVIFPLMCFNDEDEELWEEDPYEYIRKKFDIFEDGYSPDTAALDFLTT  398 (1010)
T ss_pred             HHHHHHHHHHHHhccHHHHHHHhhhHHHHHHHHhhhhhcCCCcccHHHHhcCHHHHHHhcCchhcccCCCcHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhcccchHHHHHHHHHHHhccccCCCCCCcchhhHhHHHHHHHHHHHHhhcCCcchHHHHHHHhhcccccccCCCcch
Q 003214          397 LVRKRGKENLQKFIQFIVGIFKRYDETPVEYKPYRQKDGALLAIGALCDKLKQTEPYKSELERMLVQHVFPEFSSPVGHL  476 (838)
Q Consensus       397 l~~~~~~~~~~~il~~~~~~l~~~~~~~~~~~~~~~~ea~l~~lg~i~~~l~~~~~~~~~~~~~l~~~v~p~l~~~~~~l  476 (838)
                      ++.++|+++++.+++|+.+++.+|..++...++.+.+|||++++|++++.+.++.+|+.+++.|+.+||+|+++++.+++
T Consensus       399 ~~~KR~ke~l~k~l~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~~~L~K~s~~~~~mE~flv~hVfP~f~s~~g~L  478 (1010)
T KOG1991|consen  399 LVSKRGKETLPKILSFIVDILTRYKEASPPNKNPRQKDGALRMVGSLASILLKKSPYKSQMEYFLVNHVFPEFQSPYGYL  478 (1010)
T ss_pred             HHHhcchhhhhhHHHHHHHHHHhhcccCCCccChhhhhhHHHHHHHHHHHHccCCchHHHHHHHHHHHhhHhhcCchhHH
Confidence            99999999999999999999999988766668999999999999999999998888999999999999999999999999


Q ss_pred             hhHHHHHHHhhhccccCChhHHHHHHHHHHhcCC-CCCCchHHHHHHHHHHHHHhcc-cccccccchHHHHHHHHHHhhh
Q 003214          477 RAKAAWVAGQYAHINFSDQNNFRKALHSVVSGLR-DPELPVRVDSVFALRSFVEACR-DLNEIRPILPQLLDEFFKLMNE  554 (838)
Q Consensus       477 r~ra~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~-~~~~~V~~~A~~al~~~~~~~~-~~~~l~p~l~~il~~L~~ll~~  554 (838)
                      |+||||++++|++..|+++..+.++++.+.++|. |++.|||+.|+.||+.|+.++. .++.++|+++++|+.|+.++++
T Consensus       479 rarac~vl~~~~~~df~d~~~l~~ale~t~~~l~~d~~lPV~VeAalALq~fI~~~~~~~e~~~~hvp~~mq~lL~L~ne  558 (1010)
T KOG1991|consen  479 RARACWVLSQFSSIDFKDPNNLSEALELTHNCLLNDNELPVRVEAALALQSFISNQEQADEKVSAHVPPIMQELLKLSNE  558 (1010)
T ss_pred             HHHHHHHHHHHHhccCCChHHHHHHHHHHHHHhccCCcCchhhHHHHHHHHHHhcchhhhhhHhhhhhHHHHHHHHHHHh
Confidence            9999999999999999999999999999999997 8999999999999999999987 5578999999999999999999


Q ss_pred             hchhhHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhcccCCCCCCChhHHHHHHHHHHHHHHHHhhcCChHHHHH
Q 003214          555 VENEDLVFTLETIVDKFGEEMAPYALGLCQNLAAAFWRCMNTAEADEDADDPGALAAVGCLRAISTILESVSRLPHLFVQ  634 (838)
Q Consensus       555 ~~~~~l~~~l~~iv~~~~~~i~p~~~~l~~~L~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~i~~i~~~~~~~~~~~~~  634 (838)
                      +++|.+..+|+++|..|+++++|||.+++++|+.+|++++++.+++.+.++++.+.+.|++++|.+++.++++.|+++.+
T Consensus       559 ~End~Lt~vme~iV~~fseElsPfA~eL~q~La~~F~k~l~~~~~~~~~~ddk~iaA~GiL~Ti~Til~s~e~~p~vl~~  638 (1010)
T KOG1991|consen  559 VENDDLTNVMEKIVCKFSEELSPFAVELCQNLAETFLKVLQTSEDEDESDDDKAIAASGILRTISTILLSLENHPEVLKQ  638 (1010)
T ss_pred             cchhHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHhccCCCCccchHHHHHHHHHHHHHHHHHHHHhccHHHHHH
Confidence            99999999999999999999999999999999999999998755555567889999999999999999999999999999


Q ss_pred             HHhhHHHHHHHHhccChhhHHHHHHHHHHHhhhcCCCCCHhhhHhHHHHHHHHhhhHhhhhhhhhhhhhhhhccCccccc
Q 003214          635 IEPTLLPIMRRMLTTDGQEVFEEVLEIVSYMTFFSPTISLEMWSLWPLMMEALADWAIDFFPNILVPLDNYISRGTAHFL  714 (838)
Q Consensus       635 l~~~~~p~i~~~l~~~~~~~~~~~l~ll~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~l~~~~~~L~~~i~~~~~~~l  714 (838)
                      +++.++|++.++++++..||+++++++..+++...++++|.||+++|.+++++.+++.+|++++++.|+||+.+|...+.
T Consensus       639 le~~~l~vi~~iL~~~i~dfyeE~~ei~~~~t~~~~~Isp~mW~ll~li~e~~~~~~~dyf~d~~~~l~N~vt~g~~~~~  718 (1010)
T KOG1991|consen  639 LEPIVLPVIGFILKNDITDFYEELLEIVSSLTFLSKEISPIMWGLLELILEVFQDDGIDYFTDMMPALHNYVTYGTPSLL  718 (1010)
T ss_pred             HHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhhhhcccCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhheeeCchhhh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999988


Q ss_pred             ccCCchHHHHHHHHHHHHhcCCCCCCCccCchhHHHHHHHHHcccCcccchHHHHHHHHHHHhh-hhhhHHHHHHHHHHH
Q 003214          715 TCKEPDYQQSLWSMVSSIMADKNLEDGDIEPAPKLIEVVFQNCKGQVDHWVEPYLRITVERLRR-AEKSYLKCLLVQVIA  793 (838)
Q Consensus       715 ~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~ll~~i~~~~~~~~~~~l~~il~~~l~~l~~-~~~~~~~~~~l~v~~  793 (838)
                        +++.|++.++.++++++.+++.+++++..|+++++.++++|+|.++.+++.+++.++.|+.. .+++.+++.++.|++
T Consensus       719 --s~~~y~~il~~i~~~~l~~e~~~D~d~~~a~kLle~iiL~~kg~~dq~iplf~~~a~~~l~~~~e~s~~~~~~leVvi  796 (1010)
T KOG1991|consen  719 --SNPDYLQILLEIIKKVLTSENGEDSDCESACKLLEVIILNCKGLLDQYIPLFLELALSRLTREVETSELRVMLLEVVI  796 (1010)
T ss_pred             --ccchHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHHhcCcHhhHhHHHHHHHHHHHhccccchHHHHHHHHHHH
Confidence              68899999999999999988889999888999999999999999999999999999999988 789999999999999


Q ss_pred             HhhccChHHHHHHHHhcCchHHHHHHHHHhhhhhhhcCcccc
Q 003214          794 DALYYNSSLTLSILHKLGVATEVFNLWFQMLQQVKKNGLRVN  835 (838)
Q Consensus       794 ~~~~~~~~~~~~~L~~~~~~~~~~~~w~~~~~~~~~~~~rK~  835 (838)
                      .+++|||..++++|+..|++..||..|++....+++.||||+
T Consensus       797 nalyynP~ltL~iLe~~~~~~~ff~~wf~~~~~~~~~HDkKl  838 (1010)
T KOG1991|consen  797 NALYYNPKLTLGILENQGFLNNFFTLWFQFINQFKKVHDKKL  838 (1010)
T ss_pred             HHHHcCcHHHHHHHHHcCCcccHHHHHHHHHHHHHhhhhHHH
Confidence            999999999999999999999999999999999999999997

>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG1993 consensus Nuclear transport receptor KAP120 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]	Back alignment and domain information

>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>COG5657 CSE1 CAS/CSE protein involved in chromosome segregation [Cell division and chromosome partitioning]	Back alignment and domain information

>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane	Back alignment and domain information

>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]	Back alignment and domain information

>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []	Back alignment and domain information

>KOG2022 consensus Nuclear transport receptor LGL2 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>COG5101 CRM1 Importin beta-related nuclear transport receptor [Nuclear structure / Intracellular trafficking and secretion]	Back alignment and domain information

>KOG2021 consensus Nuclear mRNA export factor receptor LOS1/Exportin-t (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport; Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>KOG2081 consensus Nuclear transport regulator [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG2020 consensus Nuclear transport receptor CRM1/MSN5 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>PF03810 IBN_N: Importin-beta N-terminal domain; InterPro: IPR001494 Karyopherins are a group of proteins involved in transporting molecules through the pores of the nuclear envelope	Back alignment and domain information

>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]	Back alignment and domain information

>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]	Back alignment and domain information

>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]	Back alignment and domain information

>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane	Back alignment and domain information

>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]	Back alignment and domain information

>KOG0915 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>KOG0212 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment	Back alignment and domain information

>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>PTZ00429 beta-adaptin; Provisional	Back alignment and domain information

>PLN03200 cellulose synthase-interactive protein; Provisional	Back alignment and domain information

>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment	Back alignment and domain information

>KOG1248 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells	Back alignment and domain information

>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]	Back alignment and domain information

>PLN03200 cellulose synthase-interactive protein; Provisional	Back alignment and domain information

>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region	Back alignment and domain information

>PTZ00429 beta-adaptin; Provisional	Back alignment and domain information

>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]	Back alignment and domain information

>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region	Back alignment and domain information

>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG0212 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms	Back alignment and domain information

>KOG1410 consensus Nuclear transport receptor RanBP16 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]	Back alignment and domain information

>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B	Back alignment and domain information

>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells	Back alignment and domain information

>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []	Back alignment and domain information

>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain	Back alignment and domain information

>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1	Back alignment and domain information

>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]	Back alignment and domain information

>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins	Back alignment and domain information

>PF08167 RIX1: rRNA processing/ribosome biogenesis	Back alignment and domain information

>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG2022 consensus Nuclear transport receptor LGL2 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]	Back alignment and domain information

>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]	Back alignment and domain information

>cd00020 ARM Armadillo/beta-catenin-like repeats	Back alignment and domain information

>KOG1248 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>KOG0915 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]	Back alignment and domain information

>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]	Back alignment and domain information

>KOG1993 consensus Nuclear transport receptor KAP120 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B	Back alignment and domain information

>PRK09687 putative lyase; Provisional	Back alignment and domain information

>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES)	Back alignment and domain information

>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []	Back alignment and domain information

>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]	Back alignment and domain information

>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]	Back alignment and domain information

>PRK09687 putative lyase; Provisional	Back alignment and domain information

>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function	Back alignment and domain information

>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II	Back alignment and domain information

>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1	Back alignment and domain information

>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]	Back alignment and domain information

>PF05804 KAP: Kinesin-associated protein (KAP)	Back alignment and domain information

>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]	Back alignment and domain information

>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A	Back alignment and domain information

>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>cd00020 ARM Armadillo/beta-catenin-like repeats	Back alignment and domain information

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]	Back alignment and domain information

>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins	Back alignment and domain information

>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p []	Back alignment and domain information

>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []	Back alignment and domain information

>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>PF10363 DUF2435: Protein of unknown function (DUF2435)	Back alignment and domain information

>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A	Back alignment and domain information

>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]	Back alignment and domain information

>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter	Back alignment and domain information

>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []	Back alignment and domain information

>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG4653 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>KOG4653 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function	Back alignment and domain information

>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]	Back alignment and domain information

>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain	Back alignment and domain information

>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms	Back alignment and domain information

>PF08167 RIX1: rRNA processing/ribosome biogenesis	Back alignment and domain information

>PF05536 Neurochondrin: Neurochondrin	Back alignment and domain information

>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]	Back alignment and domain information

>PF04510 DUF577: Family of unknown function (DUF577); InterPro: IPR007598 This is a family of Arabidopsis thaliana (Mouse-ear cress) proteins	Back alignment and domain information

>KOG2956 consensus CLIP-associating protein [General function prediction only]	Back alignment and domain information

>PF10363 DUF2435: Protein of unknown function (DUF2435)	Back alignment and domain information

>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional	Back alignment and domain information

>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]	Back alignment and domain information

>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p []	Back alignment and domain information

>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism	Back alignment and domain information

>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES)	Back alignment and domain information

>PF08161 NUC173: NUC173 domain; InterPro: IPR012978 This is the central domain of a novel family of hypothetical nucleolar proteins []	Back alignment and domain information

>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []	Back alignment and domain information

>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism	Back alignment and domain information

>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II	Back alignment and domain information

>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG2213 consensus Apoptosis inhibitor 5/fibroblast growth factor 2-interacting factor 2, and related proteins [Signal transduction mechanisms]	Back alignment and domain information

>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane	Back alignment and domain information

>PF04821 TIMELESS: Timeless protein; InterPro: IPR006906 The timeless gene in Drosophila melanogaster (Fruit fly) and its homologues in a number of other insects and mammals (including human) are involved in circadian rhythm control []	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Alignment Graph	Length	Definition	E-value
Query		838
1wa5_C		960	Crystal Structure Of The Exportin Cse1p Complexed W		2e-15
1z3h_A		968	The Exportin Cse1 In Its Cargo-free, Cytoplasmic St		2e-15

>pdb|1WA5|C Chain C, Crystal Structure Of The Exportin Cse1p Complexed With Its Cargo (Kap60p) And Rangtp Length = 960

Back alignment and structure

Iteration: 1

Score = 81.3 bits (199), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 102/439 (23%), Positives = 188/439 (42%), Gaps = 42/439 (9%) Query: 22 KAAEHSLNQFQYTPQHLVRLLQIIVDNNCDLSVRQVASIHFKNFIAKNWAPHEPNEQQKI 81 K +E +L Q + + LL +I N LS R ++ FKNFI + W N Sbjct: 21 KTSERNLRQLETQDGFGLTLLHVIASTNLPLSTRLAGALFFKNFIKRKWVDENGNHLLPA 80 Query: 82 SQVDKDMVRDHILVFVAQVPPLLRVQLGECLKTIIHADYPEQWPHLLDWVKHNLQDQQVY 141 + V+ +++ I+ + +P L+VQ+GE + +I +D+P++WP LL + L + + Sbjct: 81 NNVE--LIKKEIVPLMISLPNNLQVQIGEAISSIADSDFPDRWPTLLSDLASRLSNDDMV 138 Query: 142 ---GALFVLRILSRKYE--FKSDE---ERTPVYRIVEETFHHLLNIFNRLVQIV-----N 188 G L V + +++ F+SDE E V + F +LL + QI Sbjct: 139 TNKGVLTVAHSIFKRWRPLFRSDELFLEIKLVLDVFTAPFLNLLKTVDE--QITANENNK 196 Query: 189 PSLEVA-DLIKLICKIFWSSIYLEIPKQLLDPNVFNAWMILFLNVLERPVPSEGEPADPE 247 SL + D++ ++ K+++ +IP + + N+ M +F L P +P + E Sbjct: 197 ASLNILFDVLLVLIKLYYDFNCQDIP-EFFEDNI-QVGMGIFHKYLSYSNPLLEDPDETE 254 Query: 248 QRKSWGWWKVKKWTVHILNRLYTRFGDLKLQNPENRAFAQMFQKNYAGKILECHLNLLNR 307 KVK ++ TR+ D+ F M + ++ NLL Sbjct: 255 HASV--LIKVKSSIQELVQLYTTRYEDV---------FGPMI-----NEFIQITWNLLTS 298 Query: 308 IRVGGYLPDRVTNLILQYLSNSISKNSMYNLL--QPRLDVLLFEIVFPLMCFNDNDQKLW 365 I D + + L +L+ + + + ++ + +I+ P + + D +L+ Sbjct: 299 ISNQPKY-DILVSKSLSFLTAVTRIPKYFEIFNNESAMNNITEQIILPNVTLREEDVELF 357 Query: 366 DEDPHEYVRKGYDIIEDLYSPRTASMDFVSELVRKRGKENLQKFIQFIVGIFKRYDETPV 425 ++DP EY+R+ + D + R A DF+ EL K F+ + G +Y P Sbjct: 358 EDDPIEYIRRDLE-GSDTDTRRRACTDFLKELKEKNEVLVTNIFLAHMKGFVDQYMSDP- 415 Query: 426 EYKPYRQKDGALLAIGALC 444 K ++ KD + AL Sbjct: 416 -SKNWKFKDLYIYLFTALA 433

PyMOL of 1wa5

>pdb|1Z3H|A Chain A, The Exportin Cse1 In Its Cargo-free, Cytoplasmic State Length = 968

Back alignment and structure

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		838
1wa5_C		960	Importin alpha RE-exporter; nuclear transport/comp	1e-127
4fdd_A		852	Transportin-1; heat repeats, karyopherin, nuclear	3e-45
2bpt_A		861	Importin beta-1 subunit; nuclear transport, nucleo	8e-42
1qgr_A		876	Protein (importin beta subunit); transport recepto	5e-30
3m1i_C		1049	Exportin-1; heat repeat, GTP-binding, nucleotide-b	2e-29
2x19_B		963	Importin-13; nuclear transport, protein transport;	7e-29
1ibr_B		462	P95, importin beta-1 subunit, nuclear factor; smal	1e-25
3gjx_A		1073	Exportin-1; transport, cytoplasm, nucleus, RNA-bin	1e-18
2x1g_F		971	Cadmus; transport protein, developmental protein,	1e-18
3ibv_A		980	Exportin-T; karyopherin, heat repeat, cytoplasm, n	2e-16
3a6p_A		1204	Exportin-5; exportin-5, RANGTP, nuclearexport, imp	2e-15
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-11
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-10
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	8e-07
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-04
1b3u_A		588	Protein (protein phosphatase PP2A); scaffold prote	2e-05

>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A Length = 960	Back alignment and structure

 Score =  403 bits (1036), Expect = e-127
 Identities = 149/872 (17%), Positives = 319/872 (36%), Gaps = 93/872 (10%)

Query: 2   DLPSLALILQGALSPNPEERKAAEHSLNQFQYTPQHLVRLLQIIVDNNCDLSVRQVASIH 61
           DL ++A  L    S      K +E +L Q +      + LL +I   N  LS R   ++ 
Sbjct: 3   DLETVAKFLAE--SVIASTAKTSERNLRQLETQDGFGLTLLHVIASTNLPLSTRLAGALF 60

Query: 62  FKNFIAKNWAPHEPNEQQKISQVDKDMVRDHILVFVAQVPPLLRVQLGECLKTIIHADYP 121
           FKNFI + W     N    +   + ++++  I+  +  +P  L+VQ+GE + +I  +D+P
Sbjct: 61  FKNFIKRKWVDENGN--HLLPANNVELIKKEIVPLMISLPNNLQVQIGEAISSIADSDFP 118

Query: 122 EQWPHLLDWVKHNLQDQ---QVYGALFVLRILSRKY--EFKSDEERTPVYRIVEETFHHL 176
           ++WP LL  +   L +       G L V   + +++   F+SDE    +  +++      
Sbjct: 119 DRWPTLLSDLASRLSNDDMVTNKGVLTVAHSIFKRWRPLFRSDELFLEIKLVLDVFTAPF 178

Query: 177 LNIFNRLVQIVNPS-------LEVADLIKLICKIFWSSIYLEIPKQLLDPNVFNAWMILF 229
           LN+   + + +  +         + D++ ++ K+++     +IP+   D       M +F
Sbjct: 179 LNLLKTVDEQITANENNKASLNILFDVLLVLIKLYYDFNCQDIPEFFED--NIQVGMGIF 236

Query: 230 LNVLERPVPSEGEPADPEQRKSWGWWKVKKWTVHILNRLYTRFGDLKLQNPENRAFAQMF 289
              L    P   +P + E   +    KVK     ++    TR+ D               
Sbjct: 237 HKYLSYSNPLLEDPDETE--HASVLIKVKSSIQELVQLYTTRYED--------------V 280

Query: 290 QKNYAGKILECHLNLLNRIRVGGYLPDRVTNLILQYLSNSISKNSMYNL--LQPRLDVLL 347
                 + ++   NLL  I       D + +  L +L+        + +   +  ++ + 
Sbjct: 281 FGPMINEFIQITWNLLTSIS-NQPKYDILVSKSLSFLTAVTRIPKYFEIFNNESAMNNIT 339

Query: 348 FEIVFPLMCFNDNDQKLWDEDPHEYVRKGYDIIEDLYSPRTASMDFVSELVRKRGKENLQ 407
            +I+ P +   + D +L+++DP EY+R+  +   D  + R A  DF+ EL  K       
Sbjct: 340 EQIILPNVTLREEDVELFEDDPIEYIRRDLE-GSDTDTRRRACTDFLKELKEKNEVLVTN 398

Query: 408 KFIQFIVGIFKRYDETPVEYKPYRQKDGALLAIGALC------DKLKQTEPYKSELERML 461
            F+  + G   +Y   P +   ++ KD  +    AL       +    +      +    
Sbjct: 399 IFLAHMKGFVDQYMSDPSK--NWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVVDFF 456

Query: 462 VQHVFPEFSS---PVGHLRAKAAWVAGQYAHINFSDQNNFRKALHSVVSGLRDPELPVRV 518
            + + P+ +S   P   LR  A      +   N   +    + +  + + L+  E  V  
Sbjct: 457 TKEIAPDLTSNNIPHIILRVDAIKYIYTFR--NQLTKAQLIELMPILATFLQTDEYVVYT 514

Query: 519 DSVFALRSFVE---------ACRDLNEIRPILPQLLDEFFKLMNEV--------ENEDLV 561
            +   +   +                +I      LL     L+ +         ENE L+
Sbjct: 515 YAAITIEKILTIRESNTSPAFIFHKEDISNSTEILLKNLIALILKHGSSPEKLAENEFLM 574

Query: 562 FTLETIVDKFGEEMAPYALGLCQNLAAAFWRCMNTAEADEDADDPGALAAVGCLRAISTI 621
            ++  ++    + + P    L                  ++  +P          +I  I
Sbjct: 575 RSIFRVLQTSEDSIQPLFPQLLAQFIEIVT------IMAKNPSNP--RFTHYTFESIGAI 626

Query: 622 LESVSRLPHLFVQIEPTLLPIMRRMLTTDGQEVFEEVLEIVSYMTFFSPTISLEMWSLWP 681
           L            +  +++P    + + D QE    V +I++++   S TI   +  L  
Sbjct: 627 LNYTQ--RQNLPLLVDSMMPTFLTVFSEDIQEFIPYVFQIIAFVVEQSATIPESIKPLAQ 684

Query: 682 LMMEALADWAIDFFPNILVPLDNYISRGTAHFLTCKEPDYQQSLWSMVSSIMADKNLEDG 741
            ++           P +   L ++I   ++ F           +  +   ++A K  E  
Sbjct: 685 PLLAPNVWELKGNIPAVTRLLKSFIKTDSSIF------PDLVPVLGIFQRLIASKAYEVH 738

Query: 742 DIEPAPKLIEVVFQNCKGQ-VDHWVEPYLRITVERLRRAEK-SYLKCLLVQVIADALYYN 799
                  L+E +        +  +++    + ++RL+ ++   Y+K L V     +    
Sbjct: 739 ----GFDLLEHIMLLIDMNRLRPYIKQIAVLLLQRLQNSKTERYVKKLTVFFGLISNKLG 794

Query: 800 SSLTLSILHKL--GVATEVF-NLWFQMLQQVK 828
           S   +  + ++  G+  +++ N     L  + 
Sbjct: 795 SDFLIHFIDEVQDGLFQQIWGNFIITTLPTIG 826

PyMOL of 1wa5

>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* Length = 852	Back alignment and structure

>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A Length = 861	Back alignment and structure

>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A Length = 876	Back alignment and structure

>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B Length = 1049	Back alignment and structure

>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B Length = 963	Back alignment and structure

>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A Length = 462	Back alignment and structure

>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A Length = 1073	Back alignment and structure

>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster} Length = 971	Back alignment and structure

>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T* Length = 980	Back alignment and structure

>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens} Length = 1204	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		838
1wa5_C		960	Importin alpha RE-exporter; nuclear transport/comp	100.0
4fdd_A		852	Transportin-1; heat repeats, karyopherin, nuclear	100.0
3m1i_C		1049	Exportin-1; heat repeat, GTP-binding, nucleotide-b	100.0
2x19_B		963	Importin-13; nuclear transport, protein transport;	100.0
2x1g_F		971	Cadmus; transport protein, developmental protein,	100.0
2bpt_A		861	Importin beta-1 subunit; nuclear transport, nucleo	100.0
4hat_C		1023	Exportin-1; heat repeat, nuclear export, RAN-ranbp	100.0
1qgr_A		876	Protein (importin beta subunit); transport recepto	100.0
3gjx_A		1073	Exportin-1; transport, cytoplasm, nucleus, RNA-bin	100.0
3ibv_A		980	Exportin-T; karyopherin, heat repeat, cytoplasm, n	100.0
3a6p_A		1204	Exportin-5; exportin-5, RANGTP, nuclearexport, imp	99.98
1ibr_B		462	P95, importin beta-1 subunit, nuclear factor; smal	99.98
1u6g_C		1230	TIP120 protein, CAND1; cullin repeat, heat repeat,	99.88
4fdd_A		852	Transportin-1; heat repeats, karyopherin, nuclear	99.83
1qgr_A		876	Protein (importin beta subunit); transport recepto	99.82
2bpt_A		861	Importin beta-1 subunit; nuclear transport, nucleo	99.79
1u6g_C		1230	TIP120 protein, CAND1; cullin repeat, heat repeat,	99.62
1b3u_A		588	Protein (protein phosphatase PP2A); scaffold prote	99.42
1b3u_A		588	Protein (protein phosphatase PP2A); scaffold prote	99.38
2x19_B		963	Importin-13; nuclear transport, protein transport;	99.14
1wa5_C		960	Importin alpha RE-exporter; nuclear transport/comp	99.05
1ibr_B		462	P95, importin beta-1 subunit, nuclear factor; smal	99.05
2x1g_F		971	Cadmus; transport protein, developmental protein,	98.79
3m1i_C		1049	Exportin-1; heat repeat, GTP-binding, nucleotide-b	98.68
2vgl_B		591	AP-2 complex subunit beta-1; cytoplasmic vesicle,	98.6
2qk1_A		249	Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h	98.57
2jdq_A		450	Importin alpha-1 subunit; transport, PB2 subunit,	98.34
4b8j_A		528	Importin subunit alpha-1A; transport protein, nucl	98.31
2qk2_A		242	LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2	98.28
2jdq_A		450	Importin alpha-1 subunit; transport, PB2 subunit,	98.22
1wa5_B		530	Importin alpha subunit; nuclear transport/complex,	98.19
1w63_A		618	Adapter-related protein complex 1 gamma 1 subunit;	98.17
2qk1_A		249	Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h	98.15
2vgl_B		591	AP-2 complex subunit beta-1; cytoplasmic vesicle,	98.13
4b8j_A		528	Importin subunit alpha-1A; transport protein, nucl	98.1
2qk2_A		242	LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2	98.07
4hat_C		1023	Exportin-1; heat repeat, nuclear export, RAN-ranbp	98.02
1wa5_B		530	Importin alpha subunit; nuclear transport/complex,	97.99
3ibv_A		980	Exportin-T; karyopherin, heat repeat, cytoplasm, n	97.95
1w63_A		618	Adapter-related protein complex 1 gamma 1 subunit;	97.71
2vgl_A		621	Adaptor protein complex AP-2, alpha 2 subunit; cyt	97.64
3ul1_B		510	Importin subunit alpha-2; arm repeat, armadillo re	97.6
3now_A		810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	97.58
2vgl_A		621	Adaptor protein complex AP-2, alpha 2 subunit; cyt	97.55
3tpo_A		529	Importin subunit alpha-2; nuclear import, protein	97.48
2z6h_A		644	Catenin beta-1, beta-catenin; C-terminal domain, a	97.39
4hxt_A		252	De novo protein OR329; structural genomics, PSI-bi	97.33
2z6g_A		780	B-catenin; FULL-length, beta-catenin, cell adhesio	97.33
3tpo_A		529	Importin subunit alpha-2; nuclear import, protein	97.2
4hxt_A		252	De novo protein OR329; structural genomics, PSI-bi	97.11
4db8_A		252	Armadillo-repeat protein; solenoid repeat, de novo	97.08
1xqr_A		296	HSPBP1 protein; armadillo repeat, superhelical twi	97.04
3now_A		810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	96.97
2z6g_A		780	B-catenin; FULL-length, beta-catenin, cell adhesio	96.97
3ul1_B		510	Importin subunit alpha-2; arm repeat, armadillo re	96.92
4db6_A		210	Armadillo repeat protein; solenoid repeat, armadil	96.86
1xqr_A		296	HSPBP1 protein; armadillo repeat, superhelical twi	96.79
1jdh_A		529	Beta-catenin; beta-catenin, protein-protein comple	96.68
2z6h_A		644	Catenin beta-1, beta-catenin; C-terminal domain, a	96.63
4db8_A		252	Armadillo-repeat protein; solenoid repeat, de novo	96.47
4db6_A		210	Armadillo repeat protein; solenoid repeat, armadil	96.39
3u0r_A		507	Apoptosis inhibitor 5; heat repeat, armadillo repe	96.31
3gjx_A		1073	Exportin-1; transport, cytoplasm, nucleus, RNA-bin	96.19
3nmw_A		354	APC variant protein; ARMADIILO repeats domain, cel	95.97
2iw3_A		986	Elongation factor 3A; acetylation, ATP-binding, pr	95.92
3ltj_A		201	Alpharep-4; protein engineering, heat-like repeat,	95.8
1oyz_A		280	Hypothetical protein YIBA; structural genomics, PS	95.8
3b2a_A		265	TON_1937, putative uncharacterized protein; heat-r	95.79
3ltm_A		211	Alpha-REP4; protein engineering, heat-like repeat,	95.77
3ltj_A		201	Alpharep-4; protein engineering, heat-like repeat,	95.72
1jdh_A		529	Beta-catenin; beta-catenin, protein-protein comple	95.67
1oyz_A		280	Hypothetical protein YIBA; structural genomics, PS	95.59
2db0_A		253	253AA long hypothetical protein; heat repeats, hel	95.33
3ltm_A		211	Alpha-REP4; protein engineering, heat-like repeat,	95.28
1xm9_A		457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	94.65
1xm9_A		457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	94.44
2db0_A		253	253AA long hypothetical protein; heat repeats, hel	94.36
1te4_A		131	Conserved protein MTH187; methanobacterium thermoa	94.16
2iw3_A		986	Elongation factor 3A; acetylation, ATP-binding, pr	94.12
3l6x_A		584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	93.8
3nmz_A		458	APC variant protein; protein-protein complex, arma	93.58
4ffb_C		278	Protein STU2; tubulin fold, heat repeats, cytoskel	92.65
1te4_A		131	Conserved protein MTH187; methanobacterium thermoa	92.55
3oc3_A		800	Helicase MOT1, MOT1; regulation of transcription,	91.84
1w9c_A		321	CRM1 protein, exportin 1; nuclear protein, nuclear	91.27
3grl_A		651	General vesicular transport factor P115; vesicle t	91.21
3tjz_B		355	Coatomer subunit gamma; protein trafficking, golgi	90.96
3a6p_A		1204	Exportin-5; exportin-5, RANGTP, nuclearexport, imp	90.82
3opb_A		778	SWI5-dependent HO expression protein 4; heat and a	88.72
3b2a_A		265	TON_1937, putative uncharacterized protein; heat-r	87.99
3l9t_A		240	Putative uncharacterized protein SMU.31; hypotheti	87.44
3tjz_B		355	Coatomer subunit gamma; protein trafficking, golgi	87.38
3l6x_A		584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	87.37
1vsy_4		799	Proteasome activator BLM10; 20S proteasome BLM10,	86.39
3nmz_A		458	APC variant protein; protein-protein complex, arma	84.27
4ffb_C		278	Protein STU2; tubulin fold, heat repeats, cytoskel	82.75
4ady_A		963	RPN2, 26S proteasome regulatory subunit RPN2; prot	81.82
2of3_A		266	ZYG-9; multifunctional macromolecule, kinetochore,	80.18

>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A	Back alignment and structure

Probab=100.00  E-value=2.3e-82  Score=776.24  Aligned_cols=785  Identities=18%  Similarity=0.258  Sum_probs=654.2

Q ss_pred             ChHHHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCChHHHHHHHHHhcCcChhhHHHHHHHHHHhhhhcCCCCCCCCCCCC
Q 003214            2 DLPSLALILQGALSPNPEERKAAEHSLNQFQYTPQHLVRLLQIIVDNNCDLSVRQVASIHFKNFIAKNWAPHEPNEQQKI   81 (838)
Q Consensus         2 D~~~l~~~L~~~ls~d~~~r~~Ae~~L~~~~~~p~f~~~Ll~i~~~~~~~~~iR~~Aai~lKn~i~~~W~~~~~~~~~~l   81 (838)
                      |.++|.++|.+++|||+++|  ||++|++++++|||+.+|++++.+++.+.++|++|+++|||.|+++|+..++  ...+
T Consensus         3 d~~~l~~~L~~~~spd~~~r--Ae~~L~~~~~~p~~~~~L~~il~~~~~~~~vR~~A~i~lkn~i~~~w~~~~~--~~~l   78 (960)
T 1wa5_C            3 DLETVAKFLAESVIASTAKT--SERNLRQLETQDGFGLTLLHVIASTNLPLSTRLAGALFFKNFIKRKWVDENG--NHLL   78 (960)
T ss_dssp             HHHHHHHHHHHTTSGGGHHH--HHHHHHHHHTSTTHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHHHSBCSSS--CBSS
T ss_pred             cHHHHHHHHHHhcCCCHHHH--HHHHHHHhhcCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCCCccc--CCCC
Confidence            47899999999999999988  9999999999999999999999988889999999999999999999986432  2459


Q ss_pred             ChhhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhCCCCChhHHHHHHHHhhhh---hHHHHHHHHHHHHHHccc--
Q 003214           82 SQVDKDMVRDHILVFVAQVPPLLRVQLGECLKTIIHADYPEQWPHLLDWVKHNLQDQ---QVYGALFVLRILSRKYEF--  156 (838)
Q Consensus        82 ~~e~k~~ir~~ll~~l~~~~~~i~~~~~~~i~~Ia~~d~p~~Wp~ll~~l~~~l~s~---~~~~~L~~L~~i~~~~~~--  156 (838)
                      ++++|..||+.+++++.++++.||++++.+|+.|+++|||++||++++.+++.++++   ..+++|.+|+.+++++++  
T Consensus        79 ~~~~k~~ik~~ll~~l~~~~~~ir~~l~~~ia~ia~~d~p~~Wp~ll~~L~~~l~s~~~~~~~~aL~~l~~i~~~~~~~~  158 (960)
T 1wa5_C           79 PANNVELIKKEIVPLMISLPNNLQVQIGEAISSIADSDFPDRWPTLLSDLASRLSNDDMVTNKGVLTVAHSIFKRWRPLF  158 (960)
T ss_dssp             CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHSTTTCTTHHHHHHTTCCSSCTTHHHHHHHHHHHHHGGGTTSC
T ss_pred             CHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhCccchhHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHhh
Confidence            999999999999999988889999999999999999999999999999999999877   679999999999998875  


Q ss_pred             CCccCcchHHHHHHHHhHHHHHHHHHH---hcccCCc----hhHHHHHHHHHHHhHHhhhhcCCcccCChhhHHHHHHHH
Q 003214          157 KSDEERTPVYRIVEETFHHLLNIFNRL---VQIVNPS----LEVADLIKLICKIFWSSIYLEIPKQLLDPNVFNAWMILF  229 (838)
Q Consensus       157 ~~~~~~~~~~~~~~~~~p~l~~~~~~~---~~~~~~~----~~~~~~~~~~lki~~~~~~~~~p~~~~~~~~~~~~~~~~  229 (838)
                      ++++.+.++..++..++|.++++|...   +++..++    ....++++.++|+|++++.+++|+.+.  +++..|++.+
T Consensus       159 ~~~~~~~~l~~~l~~~~~~ll~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~k~~~~l~~~~~~~~~~--~~~~~~~~~~  236 (960)
T 1wa5_C          159 RSDELFLEIKLVLDVFTAPFLNLLKTVDEQITANENNKASLNILFDVLLVLIKLYYDFNCQDIPEFFE--DNIQVGMGIF  236 (960)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCC--CHHHHHHHHHHHHHHHHHHHHHSSCCCHHHH--HTHHHHHHHH
T ss_pred             cChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhccchHHHH--HHHHHHHHHH
Confidence            333445566777888899998888765   3322211    223567788999999988888898764  7899999999


Q ss_pred             HHHhcCCCCCCCCCCChhhhhhccchhHHHHHHHHHHHHHHHhCCCCCCChhhHHHHHHHHHHhHHHHHHHHHHHHHhhh
Q 003214          230 LNVLERPVPSEGEPADPEQRKSWGWWKVKKWTVHILNRLYTRFGDLKLQNPENRAFAQMFQKNYAGKILECHLNLLNRIR  309 (838)
Q Consensus       230 ~~~l~~~~~~~~~~~d~~~~~~~~~~k~kk~~~~~l~~l~~~~~~~~~~~~~~~~f~~~f~~~~~~~~~~~~~~~l~~~~  309 (838)
                      .+++....|..  ..|+++++..+++++|||+++++.+++++|++             .| .++++.+++.+|+.+....
T Consensus       237 ~~~l~~~~p~~--~~d~d~~~~~~~~~vk~~~~~~l~~l~~~~~~-------------~f-~~~~~~~~~~~~~~l~~~~  300 (960)
T 1wa5_C          237 HKYLSYSNPLL--EDPDETEHASVLIKVKSSIQELVQLYTTRYED-------------VF-GPMINEFIQITWNLLTSIS  300 (960)
T ss_dssp             HHHHSCCSCCC--C------CCCHHHHHHHHHHHHHHHHHHHCHH-------------HH-HHHHHHHHHHHHHHHHHCC
T ss_pred             HHHHcCCCCcc--cCCcccccccHHHHHHHHHHHHHHHHHHHHHH-------------HH-HHHHHHHHHHHHHHHHhcC
Confidence            99998754421  22333445667899999999999999998742             12 3577889999999887533


Q ss_pred             CCcccCHHHHHHHHHHHHhhcCcchhhhhch--hhHHHHHHHhHhccccCChhhHhhhhcCHHHHHHHhcccccccCCHH
Q 003214          310 VGGYLPDRVTNLILQYLSNSISKNSMYNLLQ--PRLDVLLFEIVFPLMCFNDNDQKLWDEDPHEYVRKGYDIIEDLYSPR  387 (838)
Q Consensus       310 ~~~~~~~~~~~~~l~fl~~~~~~~~~~~~~~--~~l~~li~~~i~~~l~~~~~d~e~w~~Dp~efi~~~~d~~~d~~s~r  387 (838)
                       ..+..++++.++++||.++++.+..++.++  +++..++..+++|+|+++++|++.|++||+||++++.|+ +|.+++|
T Consensus       301 -~~~~~~~~~~~al~fl~~~~~~~~~~~~~~~~~~l~~li~~~i~~~m~~~~~d~e~w~~dp~e~i~~d~e~-~d~~s~R  378 (960)
T 1wa5_C          301 -NQPKYDILVSKSLSFLTAVTRIPKYFEIFNNESAMNNITEQIILPNVTLREEDVELFEDDPIEYIRRDLEG-SDTDTRR  378 (960)
T ss_dssp             -SCTTSHHHHHHHHHHHHHHHTSHHHHGGGCSHHHHHHHHHHTHHHHHSCCGGGTTTTTTCHHHHHHHHHHC-----CHH
T ss_pred             -CCcCcHHHHHHHHHHHHHHhCcHhHHHHHcCchHHHHHHHHHhHHhcCCCHHHHHHHhcCHHHHHHhccCc-ccccCcH
Confidence             235688999999999999999888888887  899999988999999999999999999999999988763 4568999


Q ss_pred             HHHHHHHHHHHhhcccchHHHHHHHHHHHhccccCCCCCCcchhhHhHHHHHHHHHHHHhhcCC-cc-----hHHHHHHH
Q 003214          388 TASMDFVSELVRKRGKENLQKFIQFIVGIFKRYDETPVEYKPYRQKDGALLAIGALCDKLKQTE-PY-----KSELERML  461 (838)
Q Consensus       388 ~~a~~ll~~l~~~~~~~~~~~il~~~~~~l~~~~~~~~~~~~~~~~ea~l~~lg~i~~~l~~~~-~~-----~~~~~~~l  461 (838)
                      .+|.+++..++..+++.+++.+++++.+.++++.+++.  .+|+.|||+++++|+++++..... ..     ..++++++
T Consensus       379 ~aa~~~L~~l~~~~~~~v~~~~l~~i~~~l~~~~~~~~--~~w~~reaal~algaia~~~~~~~~~~~~~~~~~~l~~~l  456 (960)
T 1wa5_C          379 RACTDFLKELKEKNEVLVTNIFLAHMKGFVDQYMSDPS--KNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVVDFF  456 (960)
T ss_dssp             HHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHHHHH
T ss_pred             HHHHHHHHHHHHHcchhHHHHHHHHHHHHHHHhccCcc--hhHHHHHHHHHHHHHHHHHhccccCCcccccccccHHHHH
Confidence            99999999999999988999999999999988765442  489999999999999997642111 11     12688998


Q ss_pred             hhcccccccCC---CcchhhHHHHHHHhhhccccCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHhcc------
Q 003214          462 VQHVFPEFSSP---VGHLRAKAAWVAGQYAHINFSDQNNFRKALHSVVSGLRDPELPVRVDSVFALRSFVEACR------  532 (838)
Q Consensus       462 ~~~v~p~l~~~---~~~lr~ra~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~V~~~A~~al~~~~~~~~------  532 (838)
                      .++++|.++++   +|++|+||||++|+|+++.  .++.+..+++.++++|.|++++||.+||.||.+|++...      
T Consensus       457 ~~~v~p~l~~~~~~~p~vr~~a~~~lg~~~~~~--~~~~l~~~l~~l~~~L~d~~~~V~~~A~~Al~~~~~~~~~~~~~~  534 (960)
T 1wa5_C          457 TKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQL--TKAQLIELMPILATFLQTDEYVVYTYAAITIEKILTIRESNTSPA  534 (960)
T ss_dssp             HHHTHHHHHCSSCSCHHHHHHHHHHHHHTGGGS--CHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCBSCSSSCC
T ss_pred             HHHhHHHhcCCCCCCceehHHHHHHHHHHHhhC--CHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHhccccccccc
Confidence            88899999877   9999999999999999864  567899999999999999999999999999999998521      


Q ss_pred             ---cccccccchHHHHHHHHHHhhhh--------chhhHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhcccCCC
Q 003214          533 ---DLNEIRPILPQLLDEFFKLMNEV--------ENEDLVFTLETIVDKFGEEMAPYALGLCQNLAAAFWRCMNTAEADE  601 (838)
Q Consensus       533 ---~~~~l~p~l~~il~~L~~ll~~~--------~~~~l~~~l~~iv~~~~~~i~p~~~~l~~~L~~~~~~~~~~~~~d~  601 (838)
                         .++.+.||++++++.|+.++++.        +.+.++.+|+.++..+++++.||+..+++.|...+.+.+++    +
T Consensus       535 ~~~~~~~l~p~l~~ll~~L~~ll~~~~~~~~~~~~~e~l~~al~~vv~~~~~~~~p~~~~l~~~L~~~l~~~~~~----~  610 (960)
T 1wa5_C          535 FIFHKEDISNSTEILLKNLIALILKHGSSPEKLAENEFLMRSIFRVLQTSEDSIQPLFPQLLAQFIEIVTIMAKN----P  610 (960)
T ss_dssp             BSSCGGGTTTTHHHHHHHHHHHHHTTCCCHHHHTSCHHHHHHHHHHHHHHTTTTGGGHHHHHHHHHHHHHHHTTS----C
T ss_pred             ccccHHHhhhhHHHHHHHHHHHHHhccCCCCcccccHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhC----C
Confidence               35779999999999999999986        56679999999999999999999999999999865554332    2


Q ss_pred             CCCChhHHHHHHHHHHHHHHHHhhcCChHHHHHHHhhHHHHHHHHhccChhhHHHHHHHHHHHhhhcCCCCCHhhhHhHH
Q 003214          602 DADDPGALAAVGCLRAISTILESVSRLPHLFVQIEPTLLPIMRRMLTTDGQEVFEEVLEIVSYMTFFSPTISLEMWSLWP  681 (838)
Q Consensus       602 ~~~~~~~~~~~~~l~~i~~i~~~~~~~~~~~~~l~~~~~p~i~~~l~~~~~~~~~~~l~ll~~~~~~~~~~~~~l~~l~~  681 (838)
                         ++ ..+...++++|+.++++  ..++.+..+++.++|++..+++++..+|.+++++++..+++..++++|.+|++||
T Consensus       611 ---~~-~~~~~~~~e~l~~l~~~--~~~~~~~~~~~~~~p~~~~iL~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~  684 (960)
T 1wa5_C          611 ---SN-PRFTHYTFESIGAILNY--TQRQNLPLLVDSMMPTFLTVFSEDIQEFIPYVFQIIAFVVEQSATIPESIKPLAQ  684 (960)
T ss_dssp             ---CC-HHHHHHHHHHHHHHHHT--SCGGGHHHHHHHHHHHHHHHHHTTCTTTHHHHHHHHHHHHHHCSSCCTTTGGGHH
T ss_pred             ---CC-cHHHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHHHHHhhhHhhHHHHHHHHHHHHHhccCCCHHHHHHHH
Confidence               12 34457899999999998  4556778899999999999999999999999999999999877889999999999


Q ss_pred             HHH--HHHhhhHhhhhhhhhhhhhhhhccCcccccccCCchHHHHHHHHHHHHhcCCCCCCCccCchhHHHHHHHHHccc
Q 003214          682 LMM--EALADWAIDFFPNILVPLDNYISRGTAHFLTCKEPDYQQSLWSMVSSIMADKNLEDGDIEPAPKLIEVVFQNCKG  759 (838)
Q Consensus       682 ~l~--~~~~~~~~~~l~~~~~~L~~~i~~~~~~~l~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~ll~~i~~~~~~  759 (838)
                      .++  +.++..  .+++.+.++|.+|+..+++.+.+      ++.+++++.+++.++. .+   ..++.+++.++.++++
T Consensus       685 ~l~~~~~~~~~--~~~~~~~~~L~~~~~~~~~~~~~------~~~~l~~~~~~~~~~~-~~---~~a~~ll~~i~~~~~~  752 (960)
T 1wa5_C          685 PLLAPNVWELK--GNIPAVTRLLKSFIKTDSSIFPD------LVPVLGIFQRLIASKA-YE---VHGFDLLEHIMLLIDM  752 (960)
T ss_dssp             HHTSGGGGCCT--TTHHHHHHHHHHHHHHHGGGCSC------SHHHHHHHHHHHTCTT-TH---HHHHHHHHHHHHHSCH
T ss_pred             HHcCHHHhcCC--CCchhHHHHHHHHHHhChHHHHH------HHHHHHHHHHHhCCCc-cc---chHHHHHHHHHHHCCH
Confidence            998  776543  49999999999999999988772      5668888888887543 21   5799999999999999


Q ss_pred             C-cccchHHHHHHHHHHHhhhhhhHHH-HHHHHHHHHhhccChHHHHHHHHhcC--ch-HHHHHHHHHhhhhhhhcCccc
Q 003214          760 Q-VDHWVEPYLRITVERLRRAEKSYLK-CLLVQVIADALYYNSSLTLSILHKLG--VA-TEVFNLWFQMLQQVKKNGLRV  834 (838)
Q Consensus       760 ~-~~~~l~~il~~~l~~l~~~~~~~~~-~~~l~v~~~~~~~~~~~~~~~L~~~~--~~-~~~~~~w~~~~~~~~~~~~rK  834 (838)
                      + +.||++.++..++++++..+++.++ ..+..+...++.++|+.+++.|++++  .. ..+++.|+++++++++.+|||
T Consensus       753 ~~~~~yl~~i~~~l~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~i~~~~f~~~~~~~w~~~~~~~~~~~erk  832 (960)
T 1wa5_C          753 NRLRPYIKQIAVLLLQRLQNSKTERYVKKLTVFFGLISNKLGSDFLIHFIDEVQDGLFQQIWGNFIITTLPTIGNLLDRK  832 (960)
T ss_dssp             HHHGGGHHHHHHHHHHGGGSSCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHTTSTTHHHHHHHHTHHHHGGGCCSHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhhCCcHhHHHHHHHHHHHHHHHcCHHHHHHHHHhcchhHHHHHHHHHhccchhhccCHHHHH
Confidence            8 9999999999999999887555555 55566666677899999999999885  23 335579999999999999999


Q ss_pred             cC
Q 003214          835 NF  836 (838)
Q Consensus       835 ~~  836 (838)
                      +.
T Consensus       833 ~~  834 (960)
T 1wa5_C          833 IA  834 (960)
T ss_dssp             HH
T ss_pred             HH
Confidence            73

PyMOL of 1wa5

>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*	Back alignment and structure

>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B	Back alignment and structure

>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B	Back alignment and structure

>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}	Back alignment and structure

>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A	Back alignment and structure

>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B	Back alignment and structure

>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A	Back alignment and structure

>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A	Back alignment and structure

>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*	Back alignment and structure

>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}	Back alignment and structure

>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A	Back alignment and structure

>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A	Back alignment and structure

>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*	Back alignment and structure

>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A	Back alignment and structure

>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A	Back alignment and structure

>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A	Back alignment and structure

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A	Back alignment and structure

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A	Back alignment and structure

>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B	Back alignment and structure

>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A	Back alignment and structure

>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A	Back alignment and structure

>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}	Back alignment and structure

>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B	Back alignment and structure

>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B	Back alignment and structure

>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}	Back alignment and structure

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A	Back alignment and structure

>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A	Back alignment and structure

>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}	Back alignment and structure

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A	Back alignment and structure

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A	Back alignment and structure

>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1	Back alignment and structure

>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}	Back alignment and structure

>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B	Back alignment and structure

>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A	Back alignment and structure

>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}	Back alignment and structure

>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B	Back alignment and structure

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A	Back alignment and structure

>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*	Back alignment and structure

>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1	Back alignment and structure

>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A	Back alignment and structure

>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...	Back alignment and structure

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}	Back alignment and structure

>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A	Back alignment and structure

>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B	Back alignment and structure

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}	Back alignment and structure

>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}	Back alignment and structure

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}	Back alignment and structure

>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B	Back alignment and structure

>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}	Back alignment and structure

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}	Back alignment and structure

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*	Back alignment and structure

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}	Back alignment and structure

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}	Back alignment and structure

>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...	Back alignment and structure

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A	Back alignment and structure

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*	Back alignment and structure

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A	Back alignment and structure

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}	Back alignment and structure

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}	Back alignment and structure

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A	Back alignment and structure

>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A	Back alignment and structure

>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A	Back alignment and structure

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A	Back alignment and structure

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A	Back alignment and structure

>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}	Back alignment and structure

>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16	Back alignment and structure

>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}	Back alignment and structure

>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}	Back alignment and structure

>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}	Back alignment and structure

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A	Back alignment and structure

>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16	Back alignment and structure

>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}	Back alignment and structure

>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}	Back alignment and structure

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24	Back alignment and structure

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24	Back alignment and structure

>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}	Back alignment and structure

>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16	Back alignment and structure

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A	Back alignment and structure

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A	Back alignment and structure

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}	Back alignment and structure

>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}	Back alignment and structure

>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16	Back alignment and structure

>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}	Back alignment and structure

>1w9c_A CRM1 protein, exportin 1; nuclear protein, nuclear export complex; 2.3A {Homo sapiens} SCOP: a.118.1.19	Back alignment and structure

>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A	Back alignment and structure

>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}	Back alignment and structure

>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}	Back alignment and structure

>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}	Back alignment and structure

>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}	Back alignment and structure

>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}	Back alignment and structure

>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}	Back alignment and structure

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A	Back alignment and structure

>1vsy_4 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_5	Back alignment and structure

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}	Back alignment and structure

>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}	Back alignment and structure

>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N	Back alignment and structure

>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	E-value
Query		838
d1wa5c_		959	a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Sacc	1e-121
d1qbkb_		888	a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapi	9e-38
d1qgra_		876	a.118.1.1 (A:) Importin beta {Human (Homo sapiens)	1e-36
d2bpta1		861	a.118.1.1 (A:1-861) Importin beta {Baker's yeast (	2e-35
d1ibrb_		458	a.118.1.1 (B:) Importin beta {Human (Homo sapiens)	4e-32
d1u6gc_		1207	a.118.1.2 (C:) Cullin-associated NEDD8-dissociated	3e-04
d1b3ua_		588	a.118.1.2 (A:) Constant regulatory domain of prote	0.003

>d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 959	Back information, alignment and structure


class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Exportin Cse1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  387 bits (995), Expect = e-121
 Identities = 147/872 (16%), Positives = 314/872 (36%), Gaps = 89/872 (10%)

Query: 2   DLPSLALILQGALSPNPEERKAAEHSLNQFQYTPQHLVRLLQIIVDNNCDLSVRQVASIH 61
           DL ++A  L    S      K +E +L Q +      + LL +I   N  LS R   ++ 
Sbjct: 3   DLETVAKFLAE--SVIASTAKTSERNLRQLETQDGFGLTLLHVIASTNLPLSTRLAGALF 60

Query: 62  FKNFIAKNWAPHEPNEQQKISQVDKDMVRDHILVFVAQVPPLLRVQLGECLKTIIHADYP 121
           FKNFI + W     N    +   + ++++  I+  +  +P  L+VQ+GE + +I  +D+P
Sbjct: 61  FKNFIKRKWVDENGN--HLLPANNVELIKKEIVPLMISLPNNLQVQIGEAISSIADSDFP 118

Query: 122 EQWPHLLDWVKHNLQDQ---QVYGALFVLRILSRKY--EFKSDEERTPVYRIVEETFHHL 176
           ++WP LL  +   L +       G L V   + +++   F+SDE    +  +++      
Sbjct: 119 DRWPTLLSDLASRLSNDDMVTNKGVLTVAHSIFKRWRPLFRSDELFLEIKLVLDVFTAPF 178

Query: 177 LNIFNRLVQIVNPSL-------EVADLIKLICKIFWSSIYLEIPKQLLDPNVFNAWMILF 229
           LN+   + + +  +         + D++ ++ K+++     +IP+   D       M +F
Sbjct: 179 LNLLKTVDEQITANENNKASLNILFDVLLVLIKLYYDFNCQDIPEFFED--NIQVGMGIF 236

Query: 230 LNVLERPVPSEGEPADPEQRKSWGWWKVKKWTVHILNRLYTRFGDLKLQNPENRAFAQMF 289
              L    P   +P + E   +    KVK     ++    TR+ D               
Sbjct: 237 HKYLSYSNPLLEDPDETEH--ASVLIKVKSSIQELVQLYTTRYED--------------V 280

Query: 290 QKNYAGKILECHLNLLNRIRVGGYLPDRVTNLILQYLSNSISKNSMYNLLQ--PRLDVLL 347
                 + ++   NLL  I       D + +  L +L+        + +      ++ + 
Sbjct: 281 FGPMINEFIQITWNLLTSIS-NQPKYDILVSKSLSFLTAVTRIPKYFEIFNNESAMNNIT 339

Query: 348 FEIVFPLMCFNDNDQKLWDEDPHEYVRKGYDIIEDLYSPRTASMDFVSELVRKRGKENLQ 407
            +I+ P +   + D +L+++DP EY+R+      D  + R A  DF+ EL  K       
Sbjct: 340 EQIILPNVTLREEDVELFEDDPIEYIRR-DLEGSDTDTRRRACTDFLKELKEKNEVLVTN 398

Query: 408 KFIQFIVGIFKRYDETPVEYKPYR----QKDGALLAIGALCDKLKQTEPYKSELERMLVQ 463
            F+  + G   +Y   P +   ++        AL   G + +    +      +     +
Sbjct: 399 IFLAHMKGFVDQYMSDPSKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVVDFFTK 458

Query: 464 HVFPEFSS---PVGHLRAKAAWVAGQYAHINFSDQNNFRKALHSVVSGLRDPELPVRVDS 520
            + P+ +S   P   LR  A      + +          + +  + + L+  E  V   +
Sbjct: 459 EIAPDLTSNNIPHIILRVDAIKYIYTFRNQLTKA--QLIELMPILATFLQTDEYVVYTYA 516

Query: 521 VFALRSFVEACRD---------LNEIRPILPQLLDEFFKLMNEV--------ENEDLVFT 563
              +   +                +I      LL     L+ +         ENE L+ +
Sbjct: 517 AITIEKILTIRESNTSPAFIFHKEDISNSTEILLKNLIALILKHGSSPEKLAENEFLMRS 576

Query: 564 LETIVDKFGEEMAPYALGLCQNLAAAFWRCMNTAEADEDADDPGALAAVGCLRAISTILE 623
           +  ++    + + P    L                  ++  +P          +I  IL 
Sbjct: 577 IFRVLQTSEDSIQPLFPQLLAQFIEIVT------IMAKNPSNP--RFTHYTFESIGAILN 628

Query: 624 SVSRLPHLFVQIEPTLLPIMRRMLTTDGQEVFEEVLEIVSYMTFFSPTISLEMWSLWPLM 683
                      +  +++P    + + D QE    V +I++++   S TI   +  L   +
Sbjct: 629 YTQ--RQNLPLLVDSMMPTFLTVFSEDIQEFIPYVFQIIAFVVEQSATIPESIKPLAQPL 686

Query: 684 MEALADWAIDFFPNILVPLDNYISRGTAHFLTCKEPDYQQSLWSMVSSIMADKNLEDGDI 743
           +           P +   L ++I   ++ F           +  +   ++A K  E    
Sbjct: 687 LAPNVWELKGNIPAVTRLLKSFIKTDSSIFPD------LVPVLGIFQRLIASKAYEVH-- 738

Query: 744 EPAPKLIEVVFQNCKGQV-DHWVEPYLRITVERLRRAEK-SYLKCLLVQVIADALYYNSS 801
                L+E +           +++    + ++RL+ ++   Y+K L V     +    S 
Sbjct: 739 --GFDLLEHIMLLIDMNRLRPYIKQIAVLLLQRLQNSKTERYVKKLTVFFGLISNKLGSD 796

Query: 802 LTLSILHKL--GVATEVF-NLWFQMLQQVKKN 830
             +  + ++  G+  +++ N     L  +   
Sbjct: 797 FLIHFIDEVQDGLFQQIWGNFIITTLPTIGNL 828

PyMOL of d1wa5c_

>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} Length = 888	Back information, alignment and structure

>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Length = 876	Back information, alignment and structure

>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 861	Back information, alignment and structure

>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Length = 458	Back information, alignment and structure

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Length = 1207	Back information, alignment and structure

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 588	Back information, alignment and structure

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		838
d1wa5c_		959	Exportin Cse1p {Baker's yeast (Saccharomyces cerev	100.0
d1qbkb_		888	Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96	100.0
d2bpta1		861	Importin beta {Baker's yeast (Saccharomyces cerevi	100.0
d1qgra_		876	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1ibrb_		458	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	99.96
d2bpta1		861	Importin beta {Baker's yeast (Saccharomyces cerevi	99.5
d1u6gc_		1207	Cullin-associated NEDD8-dissociated protein 1 (Tip	99.47
d1qbkb_		888	Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96	99.46
d1qgra_		876	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	99.4
d1u6gc_		1207	Cullin-associated NEDD8-dissociated protein 1 (Tip	99.28
d1b3ua_		588	Constant regulatory domain of protein phosphatase	99.2
d1b3ua_		588	Constant regulatory domain of protein phosphatase	99.15
d1wa5c_		959	Exportin Cse1p {Baker's yeast (Saccharomyces cerev	98.78
d1ibrb_		458	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	98.63
d2vglb_		579	Adaptin beta subunit N-terminal fragment {Human (H	98.32
d2vglb_		579	Adaptin beta subunit N-terminal fragment {Human (H	98.31
d1q1sc_		434	Importin alpha {Mouse (Mus musculus) [TaxId: 10090	97.32
d1wa5b_		503	Karyopherin alpha {Baker's yeast (Saccharomyces ce	97.3
d2vgla_		584	Adaptin alpha C subunit N-terminal fragment {Mouse	97.28
d1q1sc_		434	Importin alpha {Mouse (Mus musculus) [TaxId: 10090	97.16
d1wa5b_		503	Karyopherin alpha {Baker's yeast (Saccharomyces ce	97.05
d2vgla_		584	Adaptin alpha C subunit N-terminal fragment {Mouse	96.33
d1jdha_		529	beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}	95.87
d1xqra1		264	Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi	95.58
d1te4a_		111	MTH187 {Archaeon Methanobacterium thermoautotrophi	95.13
d1jdha_		529	beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}	94.9
d1xqra1		264	Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi	94.9
d1te4a_		111	MTH187 {Archaeon Methanobacterium thermoautotrophi	93.6
d1oyza_		276	Hypothetical protein YibA {Escherichia coli [TaxId	88.47
d1w9ca_		321	Exportin-1 (Xpo1, Crm1) {Human (Homo sapiens) [Tax	87.46
d1oyza_		276	Hypothetical protein YibA {Escherichia coli [TaxId	84.96

>d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Exportin Cse1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.9e-70  Score=674.36  Aligned_cols=787  Identities=18%  Similarity=0.260  Sum_probs=638.2

Q ss_pred             ChHHHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCChHHHHHHHHHhcCcChhhHHHHHHHHHHhhhhcCCCCCCCCCCCC
Q 003214            2 DLPSLALILQGALSPNPEERKAAEHSLNQFQYTPQHLVRLLQIIVDNNCDLSVRQVASIHFKNFIAKNWAPHEPNEQQKI   81 (838)
Q Consensus         2 D~~~l~~~L~~~ls~d~~~r~~Ae~~L~~~~~~p~f~~~Ll~i~~~~~~~~~iR~~Aai~lKn~i~~~W~~~~~~~~~~l   81 (838)
                      |.++|.++|+++++|+  .||+||++|++++++|||+.+|++++.+++.+.++|++|+|+|||.|+++|++..+  ++.+
T Consensus         3 d~~~l~~ll~~s~~~~--~~k~Ae~~L~~~~~~p~f~~~L~~i~~~~~~~~~iR~~A~i~lKn~i~~~W~~~~~--~~~i   78 (959)
T d1wa5c_           3 DLETVAKFLAESVIAS--TAKTSERNLRQLETQDGFGLTLLHVIASTNLPLSTRLAGALFFKNFIKRKWVDENG--NHLL   78 (959)
T ss_dssp             HHHHHHHHHHHTTSGG--GHHHHHHHHHHHHTSTTHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHHHSBCSSS--CBSS
T ss_pred             cHHHHHHHHHHCCChH--HHHHHHHHHHHHHcCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhcccccc--cCCC
Confidence            4899999999987664  79999999999999999999999999998889999999999999999999986542  4569


Q ss_pred             ChhhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhCCCCChhHHHHHHHHhhhh---hHHHHHHHHHHHHHHcccCC
Q 003214           82 SQVDKDMVRDHILVFVAQVPPLLRVQLGECLKTIIHADYPEQWPHLLDWVKHNLQDQ---QVYGALFVLRILSRKYEFKS  158 (838)
Q Consensus        82 ~~e~k~~ir~~ll~~l~~~~~~i~~~~~~~i~~Ia~~d~p~~Wp~ll~~l~~~l~s~---~~~~~L~~L~~i~~~~~~~~  158 (838)
                      |+++|..||+.+++++.++++.||++++.+++.||+.|||++||++++.+.+.++++   ..+++|.+|+.++|++++..
T Consensus        79 ~~e~k~~Ik~~ll~~l~~~~~~ir~~l~~~i~~I~~~d~p~~Wp~ll~~l~~~l~s~~~~~~~~~L~~l~~i~k~~~~~~  158 (959)
T d1wa5c_          79 PANNVELIKKEIVPLMISLPNNLQVQIGEAISSIADSDFPDRWPTLLSDLASRLSNDDMVTNKGVLTVAHSIFKRWRPLF  158 (959)
T ss_dssp             CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHSTTTCTTHHHHHHTTCCSSCTTHHHHHHHHHHHHHGGGTTSC
T ss_pred             CHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCccccHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHhhh
Confidence            999999999999999999999999999999999999999999999999999999987   67999999999999987643


Q ss_pred             --ccCcchHHHHHHHHhHHHHHHHHHHhcc---cCCc----hhHHHHHHHHHHHhHHhhhhcCCcccCChhhHHHHHHHH
Q 003214          159 --DEERTPVYRIVEETFHHLLNIFNRLVQI---VNPS----LEVADLIKLICKIFWSSIYLEIPKQLLDPNVFNAWMILF  229 (838)
Q Consensus       159 --~~~~~~~~~~~~~~~p~l~~~~~~~~~~---~~~~----~~~~~~~~~~lki~~~~~~~~~p~~~~~~~~~~~~~~~~  229 (838)
                        ++.+..+..+.+.++|.+..++....+.   ...+    .........++|+++++...+.|..+.  +.+..|++.|
T Consensus       159 ~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~  236 (959)
T d1wa5c_         159 RSDELFLEIKLVLDVFTAPFLNLLKTVDEQITANENNKASLNILFDVLLVLIKLYYDFNCQDIPEFFE--DNIQVGMGIF  236 (959)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCC--CHHHHHHHHHHHHHHHHHHHHHSSCCCHHHH--HTHHHHHHHH
T ss_pred             cchhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHhhcchHHHH--HHHHHHHHHH
Confidence              3334456677777888887777655432   1111    123456788999999988878887665  7889999999


Q ss_pred             HHHhcCCCCCCCCCCChhhhhhccchhHHHHHHHHHHHHHHHhCCCCCCChhhHHHHHHHHHHhHHHHHHHHHHHHHhhh
Q 003214          230 LNVLERPVPSEGEPADPEQRKSWGWWKVKKWTVHILNRLYTRFGDLKLQNPENRAFAQMFQKNYAGKILECHLNLLNRIR  309 (838)
Q Consensus       230 ~~~l~~~~~~~~~~~d~~~~~~~~~~k~kk~~~~~l~~l~~~~~~~~~~~~~~~~f~~~f~~~~~~~~~~~~~~~l~~~~  309 (838)
                      ..+++...+....  +++......+.++|+++++++..+..+|++              +..++++.+++.+++.+....
T Consensus       237 ~~~l~~~~~~~~~--~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~--------------~~~~~~~~~~~~~~~~l~~~~  300 (959)
T d1wa5c_         237 HKYLSYSNPLLED--PDETEHASVLIKVKSSIQELVQLYTTRYED--------------VFGPMINEFIQITWNLLTSIS  300 (959)
T ss_dssp             HHHHSCCSCCCC--------CCCHHHHHHHHHHHHHHHHHHHCHH--------------HHHHHHHHHHHHHHHHHHHCC
T ss_pred             HHHHhcccccccC--chhhhhhhHHHHHHHHHHHHHHHHHHHhHH--------------HHHHHHHHHHHHHHHHHHHHh
Confidence            9999886653321  222223455678999999999999888632              233466778888888776533


Q ss_pred             CCcccCHHHHHHHHHHHHhhcCcchhhhhch--hhHHHHHHHhHhccccCChhhHhhhhcCHHHHHHHhcccccccCCHH
Q 003214          310 VGGYLPDRVTNLILQYLSNSISKNSMYNLLQ--PRLDVLLFEIVFPLMCFNDNDQKLWDEDPHEYVRKGYDIIEDLYSPR  387 (838)
Q Consensus       310 ~~~~~~~~~~~~~l~fl~~~~~~~~~~~~~~--~~l~~li~~~i~~~l~~~~~d~e~w~~Dp~efi~~~~d~~~d~~s~r  387 (838)
                      . .+..+.++..+++||..+++.+..+..+.  +++..++..+++|+++++++|.+.|++||++|++++.+. ++.+++|
T Consensus       301 ~-~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~l~~i~~~li~~~~~~~~~d~e~~~~dp~~~~~~~~~~-~~~~~~r  378 (959)
T d1wa5c_         301 N-QPKYDILVSKSLSFLTAVTRIPKYFEIFNNESAMNNITEQIILPNVTLREEDVELFEDDPIEYIRRDLEG-SDTDTRR  378 (959)
T ss_dssp             S-CTTSHHHHHHHHHHHHHHHTSHHHHGGGCSHHHHHHHHHHTHHHHHSCCGGGTTTTTTCHHHHHHHHHHC-----CHH
T ss_pred             c-ccccHHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHHhcCCHHHHHHHhcchHHHHHHHhhh-cccccHH
Confidence            2 24568899999999999999888777653  789999999999999999999999999999999988664 3568999


Q ss_pred             HHHHHHHHHHHhhcccchHHHHHHHHHHHhccccCCCCCCcchhhHhHHHHHHHHHHHHhhc------CCcchHHHHHHH
Q 003214          388 TASMDFVSELVRKRGKENLQKFIQFIVGIFKRYDETPVEYKPYRQKDGALLAIGALCDKLKQ------TEPYKSELERML  461 (838)
Q Consensus       388 ~~a~~ll~~l~~~~~~~~~~~il~~~~~~l~~~~~~~~~~~~~~~~ea~l~~lg~i~~~l~~------~~~~~~~~~~~l  461 (838)
                      .+|.+++..+++++++.+.+.+++++.+.+++..+.+.  .+|+.+|+++.++|+++....-      ......++.+++
T Consensus       379 ~~a~~ll~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~--~~~~~~e~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l  456 (959)
T d1wa5c_         379 RACTDFLKELKEKNEVLVTNIFLAHMKGFVDQYMSDPS--KNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVVDFF  456 (959)
T ss_dssp             HHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHHHHH
T ss_pred             HHHHHHHHHHHHhccccchHHHHHHHHHHHHhhccCCc--cchHHHHHHHHHHHHHHhhhhhhhhhhhcccchhhHHHHH
Confidence            99999999999999988888888888888876654443  4899999999999998754211      111234678889


Q ss_pred             hhcccccccC---CCcchhhHHHHHHHhhhccccCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHhcc------
Q 003214          462 VQHVFPEFSS---PVGHLRAKAAWVAGQYAHINFSDQNNFRKALHSVVSGLRDPELPVRVDSVFALRSFVEACR------  532 (838)
Q Consensus       462 ~~~v~p~l~~---~~~~lr~ra~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~V~~~A~~al~~~~~~~~------  532 (838)
                      .+++.|.+..   +++++|+|++|++|+|+++.  .++.+..+++.++++|+|++++||.+||.|+..+++...      
T Consensus       457 ~~~v~~~l~~~~~~~~~lr~~~~~~i~~~~~~~--~~~~~~~~~~~l~~~L~~~~~~V~~~a~~al~~~~~~~~~~~~~~  534 (959)
T d1wa5c_         457 TKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQL--TKAQLIELMPILATFLQTDEYVVYTYAAITIEKILTIRESNTSPA  534 (959)
T ss_dssp             HHHTHHHHHCSSCSCHHHHHHHHHHHHHTGGGS--CHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCBSCSSSCC
T ss_pred             HHHHHHHHccCCCchHHHHHHHHHHHHHHHhhc--cHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHhhcccccch
Confidence            9999888864   46889999999999999865  456789999999999999999999999999999998653      


Q ss_pred             ---cccccccchHHHHHHHHHHhhhhch--------hhHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhcccCCC
Q 003214          533 ---DLNEIRPILPQLLDEFFKLMNEVEN--------EDLVFTLETIVDKFGEEMAPYALGLCQNLAAAFWRCMNTAEADE  601 (838)
Q Consensus       533 ---~~~~l~p~l~~il~~L~~ll~~~~~--------~~l~~~l~~iv~~~~~~i~p~~~~l~~~L~~~~~~~~~~~~~d~  601 (838)
                         ..+.+.|+++++++.++..+.+...        +.+..++..++..+++.+.||+..+++.|.+.+.+.    .+++
T Consensus       535 ~~~~~~~l~p~l~~ll~~L~~~l~~~~~~~~~~~~~~~ll~~l~~ii~~~~~~~~~~~~~i~~~l~~~~~~~----~~~~  610 (959)
T d1wa5c_         535 FIFHKEDISNSTEILLKNLIALILKHGSSPEKLAENEFLMRSIFRVLQTSEDSIQPLFPQLLAQFIEIVTIM----AKNP  610 (959)
T ss_dssp             BSSCGGGTTTTHHHHHHHHHHHHHTTCCCHHHHTSCHHHHHHHHHHHHHHTTTTGGGHHHHHHHHHHHHHHH----TTSC
T ss_pred             hhccHHHHHhhHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----hcCc
Confidence               2467899999999999999876432        348889999999999999999999999998854443    2232


Q ss_pred             CCCChhHHHHHHHHHHHHHHHHhhcCChHHHHHHHhhHHHHHHHHhccChhhHHHHHHHHHHHhhhcCCCCCHhhhHhHH
Q 003214          602 DADDPGALAAVGCLRAISTILESVSRLPHLFVQIEPTLLPIMRRMLTTDGQEVFEEVLEIVSYMTFFSPTISLEMWSLWP  681 (838)
Q Consensus       602 ~~~~~~~~~~~~~l~~i~~i~~~~~~~~~~~~~l~~~~~p~i~~~l~~~~~~~~~~~l~ll~~~~~~~~~~~~~l~~l~~  681 (838)
                          ........++++++.++...+  ++.+..+++.++|++..+++++..++.++++++|..++++.+.+++.+|++++
T Consensus       611 ----~~~~~~~~~~e~l~~l~~~~~--~~~~~~l~~~l~p~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~  684 (959)
T d1wa5c_         611 ----SNPRFTHYTFESIGAILNYTQ--RQNLPLLVDSMMPTFLTVFSEDIQEFIPYVFQIIAFVVEQSATIPESIKPLAQ  684 (959)
T ss_dssp             ----CCHHHHHHHHHHHHHHHHTSC--GGGHHHHHHHHHHHHHHHHHTTCTTTHHHHHHHHHHHHHHCSSCCTTTGGGHH
T ss_pred             ----cchHHHHHHHHHHHHHHHhcC--chhHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHhCCCccHHHHHHHH
Confidence                124456789999999998754  56677899999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhhHhhhhhhhhhhhhhhhccCcccccccCCchHHHHHHHHHHHHhcCCCCCCCccCchhHHHHHHHHHcccC-
Q 003214          682 LMMEALADWAIDFFPNILVPLDNYISRGTAHFLTCKEPDYQQSLWSMVSSIMADKNLEDGDIEPAPKLIEVVFQNCKGQ-  760 (838)
Q Consensus       682 ~l~~~~~~~~~~~l~~~~~~L~~~i~~~~~~~l~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~ll~~i~~~~~~~-  760 (838)
                      .+++.......++++.+..++++|+.++++.+..      ...+++++.+++..+..+    ..++.++..++++++++ 
T Consensus       685 ~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~------~~~~l~~~~~~l~~~~~~----~~~~~ll~~ii~~~~~~~  754 (959)
T d1wa5c_         685 PLLAPNVWELKGNIPAVTRLLKSFIKTDSSIFPD------LVPVLGIFQRLIASKAYE----VHGFDLLEHIMLLIDMNR  754 (959)
T ss_dssp             HHTSGGGGCCTTTHHHHHHHHHHHHHHHGGGCSC------SHHHHHHHHHHHTCTTTH----HHHHHHHHHHHHHSCHHH
T ss_pred             HHhhHHHHHHhhhHHHHHHHHHHHHHhCHHhhcc------hHHHHHHHHHHHCCCcch----HHHHHHHHHHHHHCchhh
Confidence            9876654556778999999999999999998763      345778888888654322    35899999999999876 


Q ss_pred             cccchHHHHHHHHHHHhhhhhhHHHHHHHHHHHH-hhccChHHHHHHHHhc--CchHHHH-HHHHHhhhhhhhcCccccC
Q 003214          761 VDHWVEPYLRITVERLRRAEKSYLKCLLVQVIAD-ALYYNSSLTLSILHKL--GVATEVF-NLWFQMLQQVKKNGLRVNF  836 (838)
Q Consensus       761 ~~~~l~~il~~~l~~l~~~~~~~~~~~~l~v~~~-~~~~~~~~~~~~L~~~--~~~~~~~-~~w~~~~~~~~~~~~rK~~  836 (838)
                      +.++++.++..++++++..+.+.+...++..+++ ++.++|..++++|++.  |.+.+++ +.|+++++++++.++||+.
T Consensus       755 ~~~~l~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~  834 (959)
T d1wa5c_         755 LRPYIKQIAVLLLQRLQNSKTERYVKKLTVFFGLISNKLGSDFLIHFIDEVQDGLFQQIWGNFIITTLPTIGNLLDRKIA  834 (959)
T ss_dssp             HGGGHHHHHHHHHHGGGSSCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHTTSTTHHHHHHHHTHHHHGGGCCSHHHHHHH
T ss_pred             hHhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHcCHHHHHHHHHHhchhhHHHHHHHHHHhcccccCCHHHHHHH
Confidence            7899999999999999886555555555554444 4568999999999986  5566666 6799999999999999974

PyMOL of d1wa5c_

>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]}	Back information, alignment and structure

>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]}	Back information, alignment and structure

>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}	Back information, alignment and structure

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}	Back information, alignment and structure

>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1w9ca_ a.118.1.19 (A:) Exportin-1 (Xpo1, Crm1) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]}	Back information, alignment and structure