Citrus Sinensis ID: 003222
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 838 | 2.2.26 [Sep-21-2011] | |||||||
| O23461 | 1039 | L-arabinokinase OS=Arabid | yes | no | 0.985 | 0.794 | 0.810 | 0.0 | |
| C4LB24 | 384 | Galactokinase OS=Tolumona | yes | no | 0.279 | 0.609 | 0.282 | 4e-20 | |
| B2VBV2 | 382 | Galactokinase OS=Erwinia | yes | no | 0.252 | 0.554 | 0.289 | 1e-18 | |
| B9LFE4 | 390 | Galactokinase OS=Chlorofl | yes | no | 0.255 | 0.548 | 0.275 | 2e-18 | |
| A9WB97 | 390 | Galactokinase OS=Chlorofl | yes | no | 0.255 | 0.548 | 0.275 | 2e-18 | |
| A0KQH8 | 382 | Galactokinase OS=Aeromona | yes | no | 0.254 | 0.557 | 0.291 | 3e-17 | |
| A8GBA5 | 383 | Galactokinase OS=Serratia | yes | no | 0.262 | 0.574 | 0.279 | 9e-17 | |
| A7NI09 | 391 | Galactokinase OS=Roseifle | yes | no | 0.250 | 0.537 | 0.280 | 2e-15 | |
| A1JRX5 | 383 | Galactokinase OS=Yersinia | yes | no | 0.264 | 0.579 | 0.269 | 2e-15 | |
| Q5E0M1 | 384 | Galactokinase OS=Vibrio f | yes | no | 0.243 | 0.531 | 0.270 | 2e-15 |
| >sp|O23461|ARAK_ARATH L-arabinokinase OS=Arabidopsis thaliana GN=ARA1 PE=1 SV=1 | Back alignment and function desciption |
|---|
Score = 1384 bits (3582), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 671/828 (81%), Positives = 739/828 (89%), Gaps = 2/828 (0%)
Query: 1 MRINETDGVSASSKHLVFAYYVTGHGFGHATRVVEVVRNLISAGHDVHVVTGAPDFVFTS 60
MRI+E +GVSASSKHLVFAYYVTGHGFGHATRVVEVVR+LI+AGHDVHVVTGAPDFVFTS
Sbjct: 51 MRIDENEGVSASSKHLVFAYYVTGHGFGHATRVVEVVRHLIAAGHDVHVVTGAPDFVFTS 110
Query: 61 EIQSPRLFIRKVLLDCGAVQADALTVDRLASLEKYSETAVAPRKSILKDEVEWLNSIKAD 120
EIQSPRL IRKVLLDCGAVQADALTVDRLASLEKY ETAV PR IL+ EVEWL+SIKAD
Sbjct: 111 EIQSPRLKIRKVLLDCGAVQADALTVDRLASLEKYVETAVVPRAEILETEVEWLHSIKAD 170
Query: 121 LVVSDVVPVACRAAADAGIRSVCVTNFSWDFIYAEYVMAAGHHHRSIVWQIAEDYSHCEF 180
VVSDVVPVACRAAADAGIRSVCVTNFSWDFIYAEYVMAAG+HHRSIVWQIAEDYSHCEF
Sbjct: 171 FVVSDVVPVACRAAADAGIRSVCVTNFSWDFIYAEYVMAAGYHHRSIVWQIAEDYSHCEF 230
Query: 181 LIRLPGYCPMPAFRDVIDVPLVVRRLHKSRKEVRKELGIEDDVKLLILNFGGQPAGWKLK 240
LIRLPGYCPMPAFRDVIDVPLVVRRLHKSRKEVRKELGI +DV ++ILNFGGQP+GW LK
Sbjct: 231 LIRLPGYCPMPAFRDVIDVPLVVRRLHKSRKEVRKELGIAEDVNVVILNFGGQPSGWNLK 290
Query: 241 EEYLPSGWKCLVCGASDS-QLPPNFIKLPKDAYTPDFMAASDCMLGKIGYGTVSEALAYK 299
E LP+GW CLVCGAS++ +LPPNFIKL KDAYTPD +AASDCMLGKIGYGTVSEAL+YK
Sbjct: 291 ETSLPTGWLCLVCGASETLELPPNFIKLAKDAYTPDIIAASDCMLGKIGYGTVSEALSYK 350
Query: 300 LPFVFVRRDYFNEEPFLRNMLEFYQGGVEMIRRDLLTGHWKPYLERAISLKPCYEGGING 359
+PFVFVRRDYFNEEPFLRNMLEFYQ GVEMIRRDLL G W PYLERA+SLKPCYEGGING
Sbjct: 351 VPFVFVRRDYFNEEPFLRNMLEFYQCGVEMIRRDLLMGQWTPYLERAVSLKPCYEGGING 410
Query: 360 GEVAAHILQETAIGKNYASDKLSGARRLRDAIIFGYELQRVPGRDVSIPEWYQTAEDELG 419
GE+AAHILQETAIG++ ASDKLSGARRLRDAII GY+LQRVPGRD++IPEWY AE+ELG
Sbjct: 411 GEIAAHILQETAIGRHCASDKLSGARRLRDAIILGYQLQRVPGRDIAIPEWYSRAENELG 470
Query: 420 LSASRSPPCTP-EGDSTVKLSTEDFEILHGDCQGLPDTMSFLKSLVELDIIKDSDRTPEK 478
SA SP E +S V+ +DF+IL GD QGL DT +FLKSL LD I DS+++ EK
Sbjct: 471 QSAGSSPTVQANENNSLVESCIDDFDILQGDVQGLSDTCTFLKSLAMLDAIHDSEKSTEK 530
Query: 479 RQMRERKAAAGLFNWEEEIFVARAPGRLDVMGGIADYSGSLVLQMPIREACHVALQKISP 538
+ +RERKAA GLFNWEEEIFVARAPGRLDVMGGIADYSGSLVLQMPIREACHVA+Q+ P
Sbjct: 531 KTVRERKAAGGLFNWEEEIFVARAPGRLDVMGGIADYSGSLVLQMPIREACHVAVQRNLP 590
Query: 539 SKQRLWKHALARHNDKGQGPMPVLQIVSYGSELSNRGPTFDMDLSDFMDEGKPMSYEKAK 598
K RLWKHA AR KGQ P PVLQIVSYGSE+SNR PTFDMDLSDFMD +P+SYEKA+
Sbjct: 591 GKHRLWKHAQARQQAKGQVPTPVLQIVSYGSEISNRAPTFDMDLSDFMDGDEPISYEKAR 650
Query: 599 KYFDTNPSQKWAAYVAGTILVLMTELGVRFEDSISMLVSSAVPEGKGVSSSASVEVASMS 658
K+F +P+QKWAAYVAGTILVLM ELGVRFEDSIS+LVSSAVPEGKGVSSSA+VEVASMS
Sbjct: 651 KFFAQDPAQKWAAYVAGTILVLMIELGVRFEDSISLLVSSAVPEGKGVSSSAAVEVASMS 710
Query: 659 AIAAAHGLNIHPRDLALLCQKVENHIVGAPCGVMDQMASACGEANKLLAMVCQPAELLGV 718
AIAAAHGL+I PRDLA+LCQKVENHIVGAPCGVMDQM S+CGEANKLLAM+CQPAE++G+
Sbjct: 711 AIAAAHGLSIDPRDLAILCQKVENHIVGAPCGVMDQMTSSCGEANKLLAMICQPAEVVGL 770
Query: 719 VEIPSHIRFWGIDSGIRHSVGGADYGSVRAGAFMGRKMIKSTASGMLPQSLPSSNGLNNI 778
VEIP+H+RFWGIDSGIRHSVGGADY SVR GA+MGRKMIKS AS +L S S+NG N
Sbjct: 771 VEIPNHVRFWGIDSGIRHSVGGADYRSVRVGAYMGRKMIKSMASSILSPSASSANGGNPE 830
Query: 779 EPEVDGVELLEAEASLDYLCNLSPHRFEALYAKNIPESIVEHQFVILY 826
E E +G++LLEAEASLDYLCNLSPHR+EA YA +P+ ++ F+ Y
Sbjct: 831 ELEDEGIDLLEAEASLDYLCNLSPHRYEARYADKLPDIMLGQTFIEEY 878
|
Arabinose kinase. Involved in the salvage pathway which converts free L-arabinose to UDP-L-arabinose. May play a role in arabinose transport. Arabidopsis thaliana (taxid: 3702) EC: 2EC: .EC: 7EC: .EC: 1EC: .EC: 4EC: 6 |
| >sp|C4LB24|GAL1_TOLAT Galactokinase OS=Tolumonas auensis (strain DSM 9187 / TA4) GN=galK PE=3 SV=1 | Back alignment and function description |
|---|
Score = 100 bits (249), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 80/283 (28%), Positives = 136/283 (48%), Gaps = 49/283 (17%)
Query: 491 FNWEEEIFVARAPGRLDVMGGIADYSGSLVLQMPIREACHVALQKISPSKQRLWKHALAR 550
F E +++V RAPGR++++G DY+ VL I VALQ+ R
Sbjct: 15 FGCEPDLYV-RAPGRVNLIGEHTDYNDGFVLPCAIDYETVVALQR--------------R 59
Query: 551 HNDKGQGPMPVLQIVSYGSELSNRGPTFDMDLSDFMDEGKPMSYEKAKKYFDTNPSQKWA 610
+DK +V ++ +N+ F + +P+ + + Q W+
Sbjct: 60 DDDK---------VVVVAADYANQRDEFSL--------SQPI---------EAHADQLWS 93
Query: 611 AYVAGTILVLMTELGVRFEDSISMLVSSAVPEGKGVSSSASVEVASMSAIAAAHGLNIHP 670
Y+ G + L+ E G+ + ++M+VS VP+G G+SSSAS+EVA A A+ L + P
Sbjct: 94 NYIRGVVKYLL-EKGLSLK-GLNMVVSGNVPQGAGLSSSASLEVAIGQAFNDAYQLGLTP 151
Query: 671 RDLALLCQKVENHIVGAPCGVMDQMASACGEANKLLAMVCQPAELLGVVEIPSHIRFWGI 730
+AL Q+ EN VG CG+MDQM SA GE + L + C+ + +V++P + +
Sbjct: 152 AAIALNGQEAENKFVGCNCGIMDQMISASGEKDHALLLDCRSLQTR-LVKMPDDLAVLIV 210
Query: 731 DSGIRHSVGGADYGSVR-----AGAFMGRKMIKSTASGMLPQS 768
S ++ + ++Y + R A + G K ++ L Q+
Sbjct: 211 HSNVKRGLVDSEYNTRRAQCESAARYFGVKALRDVTLEQLQQA 253
|
Tolumonas auensis (strain DSM 9187 / TA4) (taxid: 595494) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: . EC: 6 |
| >sp|B2VBV2|GAL1_ERWT9 Galactokinase OS=Erwinia tasmaniensis (strain DSM 17950 / Et1/99) GN=galK PE=3 SV=1 | Back alignment and function description |
|---|
Score = 95.5 bits (236), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 77/266 (28%), Positives = 127/266 (47%), Gaps = 54/266 (20%)
Query: 501 RAPGRLDVMGGIADYSGSLVLQMPIREACHVALQKISPSKQRLWKHALARHNDKGQGPMP 560
+APGR++++G DY+ VL C + Q + A A+ +D+
Sbjct: 24 QAPGRVNLIGEHTDYNDGFVL------PCAIDYQTVI---------ACAKRSDR------ 62
Query: 561 VLQIVSYGSELSNRGPTFDMDLSDFMDEGKPMSYEKAKKYFDTNPSQKWAAYVAGTILVL 620
Q+ + + N+ F +D +P+ + +P Q W+ YV G + L
Sbjct: 63 --QVRTIAVDYDNQQDIFSLD--------EPI---------ERHPQQLWSDYVRGVVKYL 103
Query: 621 M---TELGVRFEDSISMLVSSAVPEGKGVSSSASVEVASMSAIAAAHGLNIHPRDLALLC 677
+LG + M++S VP+G G+SSSAS+EVA S + L + D+AL
Sbjct: 104 QQRAADLG-----GVDMVISGNVPQGAGLSSSASLEVAVGSVFRQLYQLPLSSADIALNG 158
Query: 678 QKVENHIVGAPCGVMDQMASACGEANKLLAMVCQPAELLGVVEIPSHIRFWGIDSGIRHS 737
Q+ EN VG CG+MDQM SA GE N + + C+ + V +PS I I++ + +
Sbjct: 159 QQAENQFVGCHCGIMDQMISALGEKNSAMLLDCRTLDTRA-VPMPSDIAVVIINTNFKRN 217
Query: 738 VGGADYGSVR----AGA-FMGRKMIK 758
+ G++Y + R AGA F G+ ++
Sbjct: 218 LVGSEYNTRRQQCEAGARFFGQSSLR 243
|
Erwinia tasmaniensis (strain DSM 17950 / Et1/99) (taxid: 338565) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: . EC: 6 |
| >sp|B9LFE4|GAL1_CHLSY Galactokinase OS=Chloroflexus aurantiacus (strain ATCC 29364 / DSM 637 / Y-400-fl) GN=galK PE=3 SV=1 | Back alignment and function description |
|---|
Score = 95.1 bits (235), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 72/261 (27%), Positives = 120/261 (45%), Gaps = 47/261 (18%)
Query: 499 VARAPGRLDVMGGIADYSGSLVLQMPIREACHVALQKISPSKQRLWKHALARHNDKGQGP 558
+ARAPGR++++G DY+ V M + A +VA + P ++ + + D+ Q
Sbjct: 22 IARAPGRVNLIGEHTDYNDGFVFPMALDRATYVAAR---PRNDQIVRVFSIKFRDEDQ-- 76
Query: 559 MPVLQIVSYGSELSNRGPTFDMDLSDFMDEGKPMSYEKAKKYFDTNPSQKWAAYVAGTIL 618
FD+ + + ++W Y+ G
Sbjct: 77 -------------------FDL------------------QQIVRDERRQWVNYIRGVAK 99
Query: 619 VLMT-ELGVRFEDSISMLVSSAVPEGKGVSSSASVEVASMSAIAAAHGLNIHPRDLALLC 677
L+ +L +R D +++ S VP G G+SSSA++EVA + +N+ +LAL+
Sbjct: 100 GLLARDLPLRGAD---LMIDSDVPAGSGLSSSAALEVAVGYTFQLLNNINLLGEELALVA 156
Query: 678 QKVENHIVGAPCGVMDQMASACGEANKLLAMVCQPAELLGVVEIPSHIRFWGIDSGIRHS 737
Q E+ VG CG+MDQ+ +A GEA L + C+ V IP+ R DSG+RH
Sbjct: 157 QGAEHTFVGVKCGIMDQLIAALGEAGHALLIDCRDLSYR-PVPIPAEARVVVCDSGVRHR 215
Query: 738 VGGADYGSVRAGAFMGRKMIK 758
+ G++Y RAG +++K
Sbjct: 216 LAGSEYNQRRAGCEEAVRLLK 236
|
Chloroflexus aurantiacus (strain ATCC 29364 / DSM 637 / Y-400-fl) (taxid: 480224) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: . EC: 6 |
| >sp|A9WB97|GAL1_CHLAA Galactokinase OS=Chloroflexus aurantiacus (strain ATCC 29366 / DSM 635 / J-10-fl) GN=galK PE=3 SV=1 | Back alignment and function description |
|---|
Score = 95.1 bits (235), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 72/261 (27%), Positives = 120/261 (45%), Gaps = 47/261 (18%)
Query: 499 VARAPGRLDVMGGIADYSGSLVLQMPIREACHVALQKISPSKQRLWKHALARHNDKGQGP 558
+ARAPGR++++G DY+ V M + A +VA + P ++ + + D+ Q
Sbjct: 22 IARAPGRVNLIGEHTDYNDGFVFPMALDRATYVAAR---PRNDQIVRVFSIKFRDEDQ-- 76
Query: 559 MPVLQIVSYGSELSNRGPTFDMDLSDFMDEGKPMSYEKAKKYFDTNPSQKWAAYVAGTIL 618
FD+ + + ++W Y+ G
Sbjct: 77 -------------------FDL------------------QQIVRDERRQWVNYIRGVAK 99
Query: 619 VLMT-ELGVRFEDSISMLVSSAVPEGKGVSSSASVEVASMSAIAAAHGLNIHPRDLALLC 677
L+ +L +R D +++ S VP G G+SSSA++EVA + +N+ +LAL+
Sbjct: 100 GLLARDLPLRGAD---LMIDSDVPAGSGLSSSAALEVAVGYTFQLLNNINLLGEELALVA 156
Query: 678 QKVENHIVGAPCGVMDQMASACGEANKLLAMVCQPAELLGVVEIPSHIRFWGIDSGIRHS 737
Q E+ VG CG+MDQ+ +A GEA L + C+ V IP+ R DSG+RH
Sbjct: 157 QGAEHTFVGVKCGIMDQLIAALGEAGHALLIDCRDLSYR-PVPIPAEARVVVCDSGVRHR 215
Query: 738 VGGADYGSVRAGAFMGRKMIK 758
+ G++Y RAG +++K
Sbjct: 216 LAGSEYNQRRAGCEEAVRLLK 236
|
Chloroflexus aurantiacus (strain ATCC 29366 / DSM 635 / J-10-fl) (taxid: 324602) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: . EC: 6 |
| >sp|A0KQH8|GAL1_AERHH Galactokinase OS=Aeromonas hydrophila subsp. hydrophila (strain ATCC 7966 / NCIB 9240) GN=galK PE=3 SV=1 | Back alignment and function description |
|---|
Score = 90.9 bits (224), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 75/257 (29%), Positives = 122/257 (47%), Gaps = 44/257 (17%)
Query: 491 FNWEEEIFVARAPGRLDVMGGIADYSGSLVLQMPIREACHVALQKISPSKQRLWKHALAR 550
F + ++ V RAPGR++++G DY+ VL I VA+ S H +A
Sbjct: 15 FEQQPDLLV-RAPGRVNLIGEHTDYNDGFVLPCAIDYETCVAIGLRDDS----LVHVIA- 68
Query: 551 HNDKGQGPMPVLQIVSYGSELSNRGPTFDMDLSDFMDEGKPMSYEKAKKYFDTNPSQKWA 610
YG N+ FD+D +P+ + + Q+W+
Sbjct: 69 --------------ADYG----NQRDLFDLD--------QPIGH---------HADQRWS 93
Query: 611 AYVAGTILVLMTELGVRFEDSISMLVSSAVPEGKGVSSSASVEVASMSAIAAAHGLNIHP 670
Y+ G + L E G ++++VS VP+G G+SSSAS+EVA A A GL I
Sbjct: 94 DYIRGVVKYLQ-ERGYPLR-GLNLVVSGNVPQGAGLSSSASLEVAIGQAFKEALGLAITQ 151
Query: 671 RDLALLCQKVENHIVGAPCGVMDQMASACGEANKLLAMVCQPAELLGVVEIPSHIRFWGI 730
++AL Q+ EN VG CG+MDQM SA G+ + L + C+ E ++ +P+ + +
Sbjct: 152 AEIALNGQQAENQFVGCNCGIMDQMISASGKQDHALLLDCRSLETR-LIPMPTDLAVLIV 210
Query: 731 DSGIRHSVGGADYGSVR 747
+S +R + ++Y + R
Sbjct: 211 NSNVRRGLVDSEYNTRR 227
|
Aeromonas hydrophila subsp. hydrophila (strain ATCC 7966 / NCIB 9240) (taxid: 380703) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: . EC: 6 |
| >sp|A8GBA5|GAL1_SERP5 Galactokinase OS=Serratia proteamaculans (strain 568) GN=galK PE=3 SV=1 | Back alignment and function description |
|---|
Score = 89.7 bits (221), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 76/272 (27%), Positives = 123/272 (45%), Gaps = 52/272 (19%)
Query: 501 RAPGRLDVMGGIADYSGSLVLQMPIREACHVALQKISPSKQRLWKHALARHNDKGQGPMP 560
+APGR++++G DY+ VL C + Q + A A+ +D+
Sbjct: 24 QAPGRVNLIGEHTDYNDGFVL------PCAIDYQTVI---------ACAKRDDR------ 62
Query: 561 VLQIVSYGSELSNRGPTFDMDLSDFMDEGKPMSYEKAKKYFDTNPSQKWAAYVAGTILVL 620
QI ++ + F +D P+ ++P Q+W+ YV G I
Sbjct: 63 --QIRVIAADYEGQQDQFSLD--------SPIV---------SHPDQRWSDYVRGVI--- 100
Query: 621 MTELGVRFED--SISMLVSSAVPEGKGVSSSASVEVASMSAIAAAHGLNIHPRDLALLCQ 678
L R D +++S VP+G G+SSSAS+EVA A+ A + L + LAL Q
Sbjct: 101 -KHLQQRNADFGGADLVISGNVPQGAGLSSSASLEVAVGQAMQALYALPLDGVALALNGQ 159
Query: 679 KVENHIVGAPCGVMDQMASACGEANKLLAMVCQPAELLGVVEIPSHIRFWGIDSGIRHSV 738
+ EN VG CG+MDQ+ SA GE + L + C+ E V +P I I+S ++ +
Sbjct: 160 EAENQFVGCNCGIMDQLISALGEKDHALLIDCRTLETRA-VSVPEDIAVVIINSNVKRGL 218
Query: 739 GGADYGSVR-----AGAFMGRKMIKSTASGML 765
++Y + R A F G K ++ + +
Sbjct: 219 VDSEYNTRREQCEEAARFFGVKALRDVSPDLF 250
|
Serratia proteamaculans (strain 568) (taxid: 399741) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: . EC: 6 |
| >sp|A7NI09|GAL1_ROSCS Galactokinase OS=Roseiflexus castenholzii (strain DSM 13941 / HLO8) GN=galK PE=3 SV=1 | Back alignment and function description |
|---|
Score = 85.5 bits (210), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 74/264 (28%), Positives = 113/264 (42%), Gaps = 54/264 (20%)
Query: 499 VARAPGRLDVMGGIADYSGSLVLQMPIREACHVALQKISPSKQRLWKHALARHNDKGQGP 558
+ RAPGR++++G DY+ V + I A +VA A RH+
Sbjct: 22 IVRAPGRVNLIGEHTDYNDGFVFPVAIDRATYVA--------------ARLRHD------ 61
Query: 559 MPVLQIVSYGSELSNRGPTFDMDLSDFMDEGKPMSYEKAKKYFDTNPSQKWAAYVAGTIL 618
Q+V S N TF +D E++ + W Y+ G L
Sbjct: 62 ----QLVRVASSDLNEEDTFAID-----------QIERSNR--------PWHNYIRGVAL 98
Query: 619 VLMTE----LGVRFEDSISMLVSSAVPEGKGVSSSASVEVASMSAIAAAHGLNIHPRDLA 674
L LG +L++S VP G G+SSSA++EVA A + LNI +LA
Sbjct: 99 ALRVAGHPLLGA------DLLIASDVPRGAGLSSSAALEVAVGYAFQVLNNLNILGEELA 152
Query: 675 LLCQKVENHIVGAPCGVMDQMASACGEANKLLAMVCQPAELLGVVEIPSHIRFWGIDSGI 734
LL Q EN+ VG CG+MDQ+ + G A+ L + C+ V +P + DS I
Sbjct: 153 LLAQGAENNFVGVQCGIMDQLIAVLGRADHALLIDCRDLSYRA-VPLPPSVAVVICDSHI 211
Query: 735 RHSVGGADYGSVRAGAFMGRKMIK 758
++ + Y R M ++++
Sbjct: 212 PRTLAASAYNQRRQECDMAVQLLR 235
|
Roseiflexus castenholzii (strain DSM 13941 / HLO8) (taxid: 383372) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: . EC: 6 |
| >sp|A1JRX5|GAL1_YERE8 Galactokinase OS=Yersinia enterocolitica serotype O:8 / biotype 1B (strain 8081) GN=galK PE=3 SV=1 | Back alignment and function description |
|---|
Score = 85.1 bits (209), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 74/275 (26%), Positives = 128/275 (46%), Gaps = 53/275 (19%)
Query: 491 FNWEEEIFVARAPGRLDVMGGIADYSGSLVLQMPIREACHVALQKISPSKQRLWKHALAR 550
F+ E I + +APGR++++G DY+ VL C + + + +R
Sbjct: 15 FSHEPNITI-KAPGRVNLIGEHTDYNDGFVL------PCAIDYETVISCSKR-------- 59
Query: 551 HNDKGQGPMPVLQIVSYGSELSNRGPTFDMDLSDFMDEGKPMSYEKAKKYFDTNPSQKWA 610
+D+ QI ++ N+ F +D +P+ + +WA
Sbjct: 60 -DDR--------QIHVIAADYDNQQDIFSLD--------EPIV---------PHAQYRWA 93
Query: 611 AYVAGTILVLMTELGVRFED--SISMLVSSAVPEGKGVSSSASVEVASMSAIAAAHGLNI 668
YV G + L +R D S+++S VP+G G+SSSAS+EVA A+ + + L +
Sbjct: 94 DYVRGVV----KHLQLRHADFGGASLVISGNVPQGAGLSSSASLEVAVGQALQSLYQLPL 149
Query: 669 HPRDLALLCQKVENHIVGAPCGVMDQMASACGEANKLLAMVCQPAELLGVVEIPSHIRFW 728
+LAL Q+ EN VG CG+MDQ+ SA G+ + L + C+ E V +P ++
Sbjct: 150 SGVELALNGQEAENQFVGCNCGIMDQLISALGQQDHALLIDCRTLETRA-VPMPENVAVV 208
Query: 729 GIDSGIRHSVGGADYGSVR-----AGAFMGRKMIK 758
I+S ++ + ++Y + R A F G K ++
Sbjct: 209 IINSNVKRGLVDSEYNTRRQQCETAARFFGVKALR 243
|
Yersinia enterocolitica serotype O:8 / biotype 1B (strain 8081) (taxid: 393305) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: . EC: 6 |
| >sp|Q5E0M1|GAL1_VIBF1 Galactokinase OS=Vibrio fischeri (strain ATCC 700601 / ES114) GN=galK PE=3 SV=1 | Back alignment and function description |
|---|
Score = 85.1 bits (209), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 68/251 (27%), Positives = 119/251 (47%), Gaps = 47/251 (18%)
Query: 499 VARAPGRLDVMGGIADYSGSLVLQMPIREACHVALQKISPSKQRLWKHALARHNDKGQGP 558
+ +APGR++++G DY+ VL C + Q + A A+ +D
Sbjct: 23 IVQAPGRVNLIGEHTDYNDGFVL------PCAINYQTVV---------AAAKRDDN---- 63
Query: 559 MPVLQIVS--YGSELSNRGPTFDMDLSDFMDEGKPMSYEKAKKYFDTNPSQKWAAYVAGT 616
++++VS YG+E +D D + +++++ K W+ Y+ G
Sbjct: 64 --IVRVVSVDYGNE------------TDEFDITQEITFQENKM---------WSNYIRGV 100
Query: 617 ILVLMTELGVRFEDSISMLVSSAVPEGKGVSSSASVEVASMSAIAAAHGLNIHPRDLALL 676
+ L+ + G F+ + + VS VP+G G+SSSA++EV + LNI ++AL
Sbjct: 101 VKCLI-DRGYEFKGA-DISVSGNVPQGAGLSSSAALEVVIGQTFKELYNLNISQAEIALN 158
Query: 677 CQKVENHIVGAPCGVMDQMASACGEANKLLAMVCQPAELLGVVEIPSHIRFWGIDSGIRH 736
Q+ EN VG CG+MDQM SA G N + + C+ E V +P + I+S +
Sbjct: 159 GQQAENEFVGCNCGIMDQMISAEGNENHAMLLDCRSLETTA-VSMPEDMSVVIINSNKKR 217
Query: 737 SVGGADYGSVR 747
+ ++Y + R
Sbjct: 218 GLVDSEYNTRR 228
|
Vibrio fischeri (strain ATCC 700601 / ES114) (taxid: 312309) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: . EC: 6 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 838 | ||||||
| 297804594 | 989 | hypothetical protein ARALYDRAFT_355153 [ | 0.986 | 0.836 | 0.815 | 0.0 | |
| 255574155 | 978 | galactokinase, putative [Ricinus communi | 0.972 | 0.833 | 0.839 | 0.0 | |
| 359476009 | 1149 | PREDICTED: L-arabinokinase-like [Vitis v | 0.992 | 0.724 | 0.835 | 0.0 | |
| 296081794 | 1002 | unnamed protein product [Vitis vinifera] | 0.992 | 0.830 | 0.835 | 0.0 | |
| 15234819 | 1039 | arabinose kinase [Arabidopsis thaliana] | 0.985 | 0.794 | 0.810 | 0.0 | |
| 2326372 | 989 | putative arabinose kinase [Arabidopsis t | 0.985 | 0.835 | 0.810 | 0.0 | |
| 356563759 | 1010 | PREDICTED: L-arabinokinase-like isoform | 0.971 | 0.805 | 0.818 | 0.0 | |
| 449438813 | 996 | PREDICTED: L-arabinokinase-like [Cucumis | 0.984 | 0.828 | 0.813 | 0.0 | |
| 356563761 | 999 | PREDICTED: L-arabinokinase-like isoform | 0.958 | 0.803 | 0.806 | 0.0 | |
| 357436679 | 992 | Galactokinase like protein [Medicago tru | 0.964 | 0.814 | 0.796 | 0.0 |
| >gi|297804594|ref|XP_002870181.1| hypothetical protein ARALYDRAFT_355153 [Arabidopsis lyrata subsp. lyrata] gi|297316017|gb|EFH46440.1| hypothetical protein ARALYDRAFT_355153 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 1403 bits (3631), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 676/829 (81%), Positives = 740/829 (89%), Gaps = 2/829 (0%)
Query: 1 MRINETDGVSASSKHLVFAYYVTGHGFGHATRVVEVVRNLISAGHDVHVVTGAPDFVFTS 60
MRI+E +GVSASSKHLVFAYYVTGHGFGHATRVVEVVR+LI+AGHDVHVVTGAPDFVFTS
Sbjct: 1 MRIDENEGVSASSKHLVFAYYVTGHGFGHATRVVEVVRHLIAAGHDVHVVTGAPDFVFTS 60
Query: 61 EIQSPRLFIRKVLLDCGAVQADALTVDRLASLEKYSETAVAPRKSILKDEVEWLNSIKAD 120
EIQSPRL IRKVLLDCGAVQADALTVDRLASLEKY ETAV PR IL+ EVEWL+SIKAD
Sbjct: 61 EIQSPRLKIRKVLLDCGAVQADALTVDRLASLEKYVETAVVPRAEILETEVEWLHSIKAD 120
Query: 121 LVVSDVVPVACRAAADAGIRSVCVTNFSWDFIYAEYVMAAGHHHRSIVWQIAEDYSHCEF 180
VVSDVVPVACRAAADAGIRSVCVTNFSWDFIYAEYVMAAG+HHRSIVWQIAEDYSHCEF
Sbjct: 121 FVVSDVVPVACRAAADAGIRSVCVTNFSWDFIYAEYVMAAGYHHRSIVWQIAEDYSHCEF 180
Query: 181 LIRLPGYCPMPAFRDVIDVPLVVRRLHKSRKEVRKELGIEDDVKLLILNFGGQPAGWKLK 240
LIRLPGYCPMPAFRDVIDVPLVVRRLHKSRKEVRKELGI +DV ++ILNFGGQP+GW LK
Sbjct: 181 LIRLPGYCPMPAFRDVIDVPLVVRRLHKSRKEVRKELGIGEDVNVVILNFGGQPSGWNLK 240
Query: 241 EEYLPSGWKCLVCGASDSQ-LPPNFIKLPKDAYTPDFMAASDCMLGKIGYGTVSEALAYK 299
E LP+GW CLVCGAS +Q LPPNFIKL KDAYTPD +AASDCMLGKIGYGTVSEAL+YK
Sbjct: 241 ETSLPTGWLCLVCGASKTQELPPNFIKLAKDAYTPDIIAASDCMLGKIGYGTVSEALSYK 300
Query: 300 LPFVFVRRDYFNEEPFLRNMLEFYQGGVEMIRRDLLTGHWKPYLERAISLKPCYEGGING 359
+PFVFVRRDYFNEEPFLRNMLEFYQ GVEMIRRDLL G WKPYLERA+SLKPCYEGGING
Sbjct: 301 VPFVFVRRDYFNEEPFLRNMLEFYQCGVEMIRRDLLMGQWKPYLERAVSLKPCYEGGING 360
Query: 360 GEVAAHILQETAIGKNYASDKLSGARRLRDAIIFGYELQRVPGRDVSIPEWYQTAEDELG 419
GE+AAHILQETAIG++ ASDKLSGARRLRDAII GY+LQRVPGRD++IPEWY AE+E+G
Sbjct: 361 GEIAAHILQETAIGRHCASDKLSGARRLRDAIILGYQLQRVPGRDIAIPEWYSRAENEIG 420
Query: 420 LSASRSPPCTP-EGDSTVKLSTEDFEILHGDCQGLPDTMSFLKSLVELDIIKDSDRTPEK 478
SA SP E +S V+ ST+DF+IL GD QGL DT +FLKSL LD I DS + EK
Sbjct: 421 QSAGSSPTVQANENNSLVESSTDDFDILQGDVQGLSDTWTFLKSLAMLDAIHDSQKNVEK 480
Query: 479 RQMRERKAAAGLFNWEEEIFVARAPGRLDVMGGIADYSGSLVLQMPIREACHVALQKISP 538
+ MRERKAA GLFNWEEEIFVARAPGRLDVMGGIADYSGSLVLQMPIREACHVA+Q+ P
Sbjct: 481 KTMRERKAAGGLFNWEEEIFVARAPGRLDVMGGIADYSGSLVLQMPIREACHVAVQRNLP 540
Query: 539 SKQRLWKHALARHNDKGQGPMPVLQIVSYGSELSNRGPTFDMDLSDFMDEGKPMSYEKAK 598
K RLWKHA AR KGQ P PVLQIVSYGSE+SNR PTFDMDLSDFMD +P+SYEKA+
Sbjct: 541 GKHRLWKHAQARQQAKGQVPTPVLQIVSYGSEISNRAPTFDMDLSDFMDGDEPISYEKAR 600
Query: 599 KYFDTNPSQKWAAYVAGTILVLMTELGVRFEDSISMLVSSAVPEGKGVSSSASVEVASMS 658
K+F +P+QKWAAYVAGTILVLM ELGVRFEDSIS+LVSSAVPEGKGVSSSA+VEVASMS
Sbjct: 601 KFFAQDPAQKWAAYVAGTILVLMIELGVRFEDSISLLVSSAVPEGKGVSSSAAVEVASMS 660
Query: 659 AIAAAHGLNIHPRDLALLCQKVENHIVGAPCGVMDQMASACGEANKLLAMVCQPAELLGV 718
AIAAAHGLNI PRDLA+LCQKVENHIVGAPCGVMDQM S+CGEANKLLAM+CQPAE++G+
Sbjct: 661 AIAAAHGLNISPRDLAILCQKVENHIVGAPCGVMDQMTSSCGEANKLLAMICQPAEVVGL 720
Query: 719 VEIPSHIRFWGIDSGIRHSVGGADYGSVRAGAFMGRKMIKSTASGMLPQSLPSSNGLNNI 778
VEIP+H+RFWGIDSGIRHSVGGADY SVR GA+MGRKMIKS AS +L Q+ S+NG N
Sbjct: 721 VEIPNHVRFWGIDSGIRHSVGGADYRSVRVGAYMGRKMIKSMASSILSQAALSANGGNPE 780
Query: 779 EPEVDGVELLEAEASLDYLCNLSPHRFEALYAKNIPESIVEHQFVILYT 827
E E +G++LLEAEASLDYLCNLSPHR+EA YA +P ++ F+ Y+
Sbjct: 781 ELEDEGIDLLEAEASLDYLCNLSPHRYEARYADKLPNIMLGQTFIEEYS 829
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255574155|ref|XP_002527993.1| galactokinase, putative [Ricinus communis] gi|223532619|gb|EEF34405.1| galactokinase, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 1397 bits (3615), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 694/827 (83%), Positives = 734/827 (88%), Gaps = 12/827 (1%)
Query: 1 MRINETDGVSASSKHLVFAYYVTGHGFGHATRVVEVVRNLISAGHDVHVVTGAPDFVFTS 60
MRI E++GVS SSKHLVFAYYVTGHGFGHATRVVEV RNLI AGHDVHVVTGAPDFVFTS
Sbjct: 1 MRI-ESNGVSPSSKHLVFAYYVTGHGFGHATRVVEVARNLILAGHDVHVVTGAPDFVFTS 59
Query: 61 EIQSPRLFIRKVLLDCGAVQADALTVDRLASLEKYSETAVAPRKSILKDEVEWLNSIKAD 120
EIQSPRLFIRKVLLDCGAVQADALTVDRLASLEKYSETAV PR+SIL E+EWLNSIKAD
Sbjct: 60 EIQSPRLFIRKVLLDCGAVQADALTVDRLASLEKYSETAVKPRESILATEIEWLNSIKAD 119
Query: 121 LVVSDVVPVACRAAADAGIRSVCVTNFSWDFIYAEYVMAAGHHHRSIVWQIAEDYSHCEF 180
LVVSDVVPVACRAAADAGIRSVCVTNFSWDFIYAEYVMA I +DYSHCEF
Sbjct: 120 LVVSDVVPVACRAAADAGIRSVCVTNFSWDFIYAEYVMAX----------ICQDYSHCEF 169
Query: 181 LIRLPGYCPMPAFRDVIDVPLVVRRLHKSRKEVRKELGIEDDVKLLILNFGGQPAGWKLK 240
LIRLPGYCPMPAFRDVIDVPLVVRRLHKSR EVRKELGI DD+KL+ILNFGGQPAGWKLK
Sbjct: 170 LIRLPGYCPMPAFRDVIDVPLVVRRLHKSRNEVRKELGISDDIKLVILNFGGQPAGWKLK 229
Query: 241 EEYLPSGWKCLVCGASDSQ-LPPNFIKLPKDAYTPDFMAASDCMLGKIGYGTVSEALAYK 299
EEYLPSGW CLVCGASDSQ LPPNFIKL KDAYTPD +AASDCMLGKIGYGTVSEALAYK
Sbjct: 230 EEYLPSGWLCLVCGASDSQELPPNFIKLAKDAYTPDLIAASDCMLGKIGYGTVSEALAYK 289
Query: 300 LPFVFVRRDYFNEEPFLRNMLEFYQGGVEMIRRDLLTGHWKPYLERAISLKPCYEGGING 359
LPFVFVRRDYFNEEPFLRNMLE+YQ GVEMIRRDLL GHWKPYLERAISLKPCYEGG NG
Sbjct: 290 LPFVFVRRDYFNEEPFLRNMLEYYQSGVEMIRRDLLVGHWKPYLERAISLKPCYEGGSNG 349
Query: 360 GEVAAHILQETAIGKNYASDKLSGARRLRDAIIFGYELQRVPGRDVSIPEWYQTAEDELG 419
GEVAAHILQETAIGKNYASDKLSGARRLRDAII GY+LQR PGRD+SIPEWY AE+EL
Sbjct: 350 GEVAAHILQETAIGKNYASDKLSGARRLRDAIILGYQLQRAPGRDISIPEWYANAENELS 409
Query: 420 LSASRSPPCTPEGDSTVKLSTEDFEILHGDCQGLPDTMSFLKSLVELDIIKDSDRTPEKR 479
S T + TEDF+ILHGD QGL DTMSFLKSL EL+ + +S++ EKR
Sbjct: 410 KSTGSPVAQTCLNGPPTSICTEDFDILHGDLQGLSDTMSFLKSLAELNSVYESEKNTEKR 469
Query: 480 QMRERKAAAGLFNWEEEIFVARAPGRLDVMGGIADYSGSLVLQMPIREACHVALQKISPS 539
QMRERKAAAGLFNWEE+IFVARAPGRLDVMGGIADYSGSLVLQMPIREACH A+Q+ PS
Sbjct: 470 QMRERKAAAGLFNWEEDIFVARAPGRLDVMGGIADYSGSLVLQMPIREACHAAVQRNHPS 529
Query: 540 KQRLWKHALARHNDKGQGPMPVLQIVSYGSELSNRGPTFDMDLSDFMDEGKPMSYEKAKK 599
K RLWKHA AR + KGQGP PVLQIVSYGSELSNRGPTFDMDL+DFMD KPMSYEKA+K
Sbjct: 530 KHRLWKHAQARQSSKGQGPTPVLQIVSYGSELSNRGPTFDMDLADFMDGDKPMSYEKARK 589
Query: 600 YFDTNPSQKWAAYVAGTILVLMTELGVRFEDSISMLVSSAVPEGKGVSSSASVEVASMSA 659
YF +PSQKWAAYVAGTILVLMTELG+ FEDSISMLVSSAVPEGKGVSSSASVEVASMSA
Sbjct: 590 YFAQDPSQKWAAYVAGTILVLMTELGLHFEDSISMLVSSAVPEGKGVSSSASVEVASMSA 649
Query: 660 IAAAHGLNIHPRDLALLCQKVENHIVGAPCGVMDQMASACGEANKLLAMVCQPAELLGVV 719
IA AHGLNI PR++ALLCQKVENHIVGAPCGVMDQM S CGEANKLLAMVCQPAE++G+V
Sbjct: 650 IATAHGLNIGPREMALLCQKVENHIVGAPCGVMDQMTSVCGEANKLLAMVCQPAEVIGLV 709
Query: 720 EIPSHIRFWGIDSGIRHSVGGADYGSVRAGAFMGRKMIKSTASGMLPQSLPSSNGLNNIE 779
EIP+HIRFWGIDSGIRHSVGG DYGSVR GAFMGRKMIKSTAS +L +SLP NGL E
Sbjct: 710 EIPTHIRFWGIDSGIRHSVGGTDYGSVRIGAFMGRKMIKSTASAVLSRSLPGDNGLIIDE 769
Query: 780 PEVDGVELLEAEASLDYLCNLSPHRFEALYAKNIPESIVEHQFVILY 826
E DGVELL+AEA LDYLCNLSPHR+EALY K +PESI+ F+ Y
Sbjct: 770 LEDDGVELLKAEALLDYLCNLSPHRYEALYTKILPESILGEAFLEKY 816
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359476009|ref|XP_002280915.2| PREDICTED: L-arabinokinase-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1394 bits (3608), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 697/834 (83%), Positives = 749/834 (89%), Gaps = 2/834 (0%)
Query: 1 MRINET-DGVSASSKHLVFAYYVTGHGFGHATRVVEVVRNLISAGHDVHVVTGAPDFVFT 59
MRI E D VSAS +HLVFAYYVTGHGFGHATRVVEVVR+LI AGHDVHVV+ APDFVFT
Sbjct: 148 MRIEEDGDRVSASRQHLVFAYYVTGHGFGHATRVVEVVRHLILAGHDVHVVSAAPDFVFT 207
Query: 60 SEIQSPRLFIRKVLLDCGAVQADALTVDRLASLEKYSETAVAPRKSILKDEVEWLNSIKA 119
SE+QSPRLFIRKVLLDCGAVQADALTVDRLASLEKYSETAVAPR SIL E+EWLNSIKA
Sbjct: 208 SEVQSPRLFIRKVLLDCGAVQADALTVDRLASLEKYSETAVAPRASILATEIEWLNSIKA 267
Query: 120 DLVVSDVVPVACRAAADAGIRSVCVTNFSWDFIYAEYVMAAGHHHRSIVWQIAEDYSHCE 179
DLVVSDVVPVACRAAADAGIRSVCVTNFSWDFIYAEYVM AG+HHRSIVWQIAEDYSHCE
Sbjct: 268 DLVVSDVVPVACRAAADAGIRSVCVTNFSWDFIYAEYVMVAGNHHRSIVWQIAEDYSHCE 327
Query: 180 FLIRLPGYCPMPAFRDVIDVPLVVRRLHKSRKEVRKELGIEDDVKLLILNFGGQPAGWKL 239
FLIRLPGYCPMPAFRDVIDVPLVVRRLHKSRKEVRKELGI +DVKL+I NFGGQPAGWKL
Sbjct: 328 FLIRLPGYCPMPAFRDVIDVPLVVRRLHKSRKEVRKELGIGEDVKLVIFNFGGQPAGWKL 387
Query: 240 KEEYLPSGWKCLVCGASDS-QLPPNFIKLPKDAYTPDFMAASDCMLGKIGYGTVSEALAY 298
KEEYLPSGW CLVCGASD +LPPNF++L KD YTPD +AASDCMLGKIGYGTVSEALA+
Sbjct: 388 KEEYLPSGWLCLVCGASDKDELPPNFLRLAKDVYTPDLIAASDCMLGKIGYGTVSEALAF 447
Query: 299 KLPFVFVRRDYFNEEPFLRNMLEFYQGGVEMIRRDLLTGHWKPYLERAISLKPCYEGGIN 358
KLPFVFVRRDYFNEEPFLRNMLE+YQGGVEMIRRDLLTGHW PYLERAISLKPCYEGGI+
Sbjct: 448 KLPFVFVRRDYFNEEPFLRNMLEYYQGGVEMIRRDLLTGHWLPYLERAISLKPCYEGGID 507
Query: 359 GGEVAAHILQETAIGKNYASDKLSGARRLRDAIIFGYELQRVPGRDVSIPEWYQTAEDEL 418
GGEVAA ILQ+TAIGKNYASDK SGARRLRDAI+ GY+LQR PGRDV IP+WY AE+EL
Sbjct: 508 GGEVAARILQDTAIGKNYASDKFSGARRLRDAIVLGYQLQRAPGRDVCIPDWYANAENEL 567
Query: 419 GLSASRSPPCTPEGDSTVKLSTEDFEILHGDCQGLPDTMSFLKSLVELDIIKDSDRTPEK 478
GL + S + TEDF+ILHGD QGL DTM+FLKSLV+LD DS + EK
Sbjct: 568 GLRTGLPTIEMNDDSSLMNSCTEDFDILHGDVQGLSDTMNFLKSLVKLDAAYDSGKDTEK 627
Query: 479 RQMRERKAAAGLFNWEEEIFVARAPGRLDVMGGIADYSGSLVLQMPIREACHVALQKISP 538
R++RER AAAGLFNWEEEIFVARAPGRLDVMGGIADYSGSLVLQMPIREACHVA+Q+ P
Sbjct: 628 RKIRERVAAAGLFNWEEEIFVARAPGRLDVMGGIADYSGSLVLQMPIREACHVAVQRNHP 687
Query: 539 SKQRLWKHALARHNDKGQGPMPVLQIVSYGSELSNRGPTFDMDLSDFMDEGKPMSYEKAK 598
SKQRLWKHA AR + KGQGP PVLQIVSYGSELSNRGPTFDMDLSDFMD +PMSYEKAK
Sbjct: 688 SKQRLWKHAQARQHAKGQGPTPVLQIVSYGSELSNRGPTFDMDLSDFMDGDQPMSYEKAK 747
Query: 599 KYFDTNPSQKWAAYVAGTILVLMTELGVRFEDSISMLVSSAVPEGKGVSSSASVEVASMS 658
KYF +PSQKWAAYVAG+ILVLMTELGVRFEDSISMLVSSAVPEGKGVSSSASVEVASMS
Sbjct: 748 KYFAQDPSQKWAAYVAGSILVLMTELGVRFEDSISMLVSSAVPEGKGVSSSASVEVASMS 807
Query: 659 AIAAAHGLNIHPRDLALLCQKVENHIVGAPCGVMDQMASACGEANKLLAMVCQPAELLGV 718
AIAAAHGLNI PRDLALLCQKVENHIVGAPCGVMDQM SACGE NKLLAM+CQPAE++G
Sbjct: 808 AIAAAHGLNISPRDLALLCQKVENHIVGAPCGVMDQMTSACGETNKLLAMICQPAEVVGH 867
Query: 719 VEIPSHIRFWGIDSGIRHSVGGADYGSVRAGAFMGRKMIKSTASGMLPQSLPSSNGLNNI 778
VEIP HIRFWGIDSGIRHSVGGADYGSVR G FMGRKMIKS A+ +L +SLPSSNG+++
Sbjct: 868 VEIPGHIRFWGIDSGIRHSVGGADYGSVRIGTFMGRKMIKSMAAAVLSRSLPSSNGISHY 927
Query: 779 EPEVDGVELLEAEASLDYLCNLSPHRFEALYAKNIPESIVEHQFVILYTRISES 832
E E +G ELLEAEASLDYLCNL+PHR+EALYAK +PES++ F+ Y ++S
Sbjct: 928 ELEEEGGELLEAEASLDYLCNLAPHRYEALYAKMLPESMLGETFLERYADHNDS 981
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|296081794|emb|CBI20799.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1392 bits (3603), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 697/834 (83%), Positives = 749/834 (89%), Gaps = 2/834 (0%)
Query: 1 MRINET-DGVSASSKHLVFAYYVTGHGFGHATRVVEVVRNLISAGHDVHVVTGAPDFVFT 59
MRI E D VSAS +HLVFAYYVTGHGFGHATRVVEVVR+LI AGHDVHVV+ APDFVFT
Sbjct: 1 MRIEEDGDRVSASRQHLVFAYYVTGHGFGHATRVVEVVRHLILAGHDVHVVSAAPDFVFT 60
Query: 60 SEIQSPRLFIRKVLLDCGAVQADALTVDRLASLEKYSETAVAPRKSILKDEVEWLNSIKA 119
SE+QSPRLFIRKVLLDCGAVQADALTVDRLASLEKYSETAVAPR SIL E+EWLNSIKA
Sbjct: 61 SEVQSPRLFIRKVLLDCGAVQADALTVDRLASLEKYSETAVAPRASILATEIEWLNSIKA 120
Query: 120 DLVVSDVVPVACRAAADAGIRSVCVTNFSWDFIYAEYVMAAGHHHRSIVWQIAEDYSHCE 179
DLVVSDVVPVACRAAADAGIRSVCVTNFSWDFIYAEYVM AG+HHRSIVWQIAEDYSHCE
Sbjct: 121 DLVVSDVVPVACRAAADAGIRSVCVTNFSWDFIYAEYVMVAGNHHRSIVWQIAEDYSHCE 180
Query: 180 FLIRLPGYCPMPAFRDVIDVPLVVRRLHKSRKEVRKELGIEDDVKLLILNFGGQPAGWKL 239
FLIRLPGYCPMPAFRDVIDVPLVVRRLHKSRKEVRKELGI +DVKL+I NFGGQPAGWKL
Sbjct: 181 FLIRLPGYCPMPAFRDVIDVPLVVRRLHKSRKEVRKELGIGEDVKLVIFNFGGQPAGWKL 240
Query: 240 KEEYLPSGWKCLVCGASDS-QLPPNFIKLPKDAYTPDFMAASDCMLGKIGYGTVSEALAY 298
KEEYLPSGW CLVCGASD +LPPNF++L KD YTPD +AASDCMLGKIGYGTVSEALA+
Sbjct: 241 KEEYLPSGWLCLVCGASDKDELPPNFLRLAKDVYTPDLIAASDCMLGKIGYGTVSEALAF 300
Query: 299 KLPFVFVRRDYFNEEPFLRNMLEFYQGGVEMIRRDLLTGHWKPYLERAISLKPCYEGGIN 358
KLPFVFVRRDYFNEEPFLRNMLE+YQGGVEMIRRDLLTGHW PYLERAISLKPCYEGGI+
Sbjct: 301 KLPFVFVRRDYFNEEPFLRNMLEYYQGGVEMIRRDLLTGHWLPYLERAISLKPCYEGGID 360
Query: 359 GGEVAAHILQETAIGKNYASDKLSGARRLRDAIIFGYELQRVPGRDVSIPEWYQTAEDEL 418
GGEVAA ILQ+TAIGKNYASDK SGARRLRDAI+ GY+LQR PGRDV IP+WY AE+EL
Sbjct: 361 GGEVAARILQDTAIGKNYASDKFSGARRLRDAIVLGYQLQRAPGRDVCIPDWYANAENEL 420
Query: 419 GLSASRSPPCTPEGDSTVKLSTEDFEILHGDCQGLPDTMSFLKSLVELDIIKDSDRTPEK 478
GL + S + TEDF+ILHGD QGL DTM+FLKSLV+LD DS + EK
Sbjct: 421 GLRTGLPTIEMNDDSSLMNSCTEDFDILHGDVQGLSDTMNFLKSLVKLDAAYDSGKDTEK 480
Query: 479 RQMRERKAAAGLFNWEEEIFVARAPGRLDVMGGIADYSGSLVLQMPIREACHVALQKISP 538
R++RER AAAGLFNWEEEIFVARAPGRLDVMGGIADYSGSLVLQMPIREACHVA+Q+ P
Sbjct: 481 RKIRERVAAAGLFNWEEEIFVARAPGRLDVMGGIADYSGSLVLQMPIREACHVAVQRNHP 540
Query: 539 SKQRLWKHALARHNDKGQGPMPVLQIVSYGSELSNRGPTFDMDLSDFMDEGKPMSYEKAK 598
SKQRLWKHA AR + KGQGP PVLQIVSYGSELSNRGPTFDMDLSDFMD +PMSYEKAK
Sbjct: 541 SKQRLWKHAQARQHAKGQGPTPVLQIVSYGSELSNRGPTFDMDLSDFMDGDQPMSYEKAK 600
Query: 599 KYFDTNPSQKWAAYVAGTILVLMTELGVRFEDSISMLVSSAVPEGKGVSSSASVEVASMS 658
KYF +PSQKWAAYVAG+ILVLMTELGVRFEDSISMLVSSAVPEGKGVSSSASVEVASMS
Sbjct: 601 KYFAQDPSQKWAAYVAGSILVLMTELGVRFEDSISMLVSSAVPEGKGVSSSASVEVASMS 660
Query: 659 AIAAAHGLNIHPRDLALLCQKVENHIVGAPCGVMDQMASACGEANKLLAMVCQPAELLGV 718
AIAAAHGLNI PRDLALLCQKVENHIVGAPCGVMDQM SACGE NKLLAM+CQPAE++G
Sbjct: 661 AIAAAHGLNISPRDLALLCQKVENHIVGAPCGVMDQMTSACGETNKLLAMICQPAEVVGH 720
Query: 719 VEIPSHIRFWGIDSGIRHSVGGADYGSVRAGAFMGRKMIKSTASGMLPQSLPSSNGLNNI 778
VEIP HIRFWGIDSGIRHSVGGADYGSVR G FMGRKMIKS A+ +L +SLPSSNG+++
Sbjct: 721 VEIPGHIRFWGIDSGIRHSVGGADYGSVRIGTFMGRKMIKSMAAAVLSRSLPSSNGISHY 780
Query: 779 EPEVDGVELLEAEASLDYLCNLSPHRFEALYAKNIPESIVEHQFVILYTRISES 832
E E +G ELLEAEASLDYLCNL+PHR+EALYAK +PES++ F+ Y ++S
Sbjct: 781 ELEEEGGELLEAEASLDYLCNLAPHRYEALYAKMLPESMLGETFLERYADHNDS 834
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|15234819|ref|NP_193348.1| arabinose kinase [Arabidopsis thaliana] gi|75277390|sp|O23461.1|ARAK_ARATH RecName: Full=L-arabinokinase; Short=AtISA1 gi|2244971|emb|CAB10392.1| galactokinase like protein [Arabidopsis thaliana] gi|7268362|emb|CAB78655.1| galactokinase like protein [Arabidopsis thaliana] gi|332658296|gb|AEE83696.1| arabinose kinase [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 1384 bits (3582), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 671/828 (81%), Positives = 739/828 (89%), Gaps = 2/828 (0%)
Query: 1 MRINETDGVSASSKHLVFAYYVTGHGFGHATRVVEVVRNLISAGHDVHVVTGAPDFVFTS 60
MRI+E +GVSASSKHLVFAYYVTGHGFGHATRVVEVVR+LI+AGHDVHVVTGAPDFVFTS
Sbjct: 51 MRIDENEGVSASSKHLVFAYYVTGHGFGHATRVVEVVRHLIAAGHDVHVVTGAPDFVFTS 110
Query: 61 EIQSPRLFIRKVLLDCGAVQADALTVDRLASLEKYSETAVAPRKSILKDEVEWLNSIKAD 120
EIQSPRL IRKVLLDCGAVQADALTVDRLASLEKY ETAV PR IL+ EVEWL+SIKAD
Sbjct: 111 EIQSPRLKIRKVLLDCGAVQADALTVDRLASLEKYVETAVVPRAEILETEVEWLHSIKAD 170
Query: 121 LVVSDVVPVACRAAADAGIRSVCVTNFSWDFIYAEYVMAAGHHHRSIVWQIAEDYSHCEF 180
VVSDVVPVACRAAADAGIRSVCVTNFSWDFIYAEYVMAAG+HHRSIVWQIAEDYSHCEF
Sbjct: 171 FVVSDVVPVACRAAADAGIRSVCVTNFSWDFIYAEYVMAAGYHHRSIVWQIAEDYSHCEF 230
Query: 181 LIRLPGYCPMPAFRDVIDVPLVVRRLHKSRKEVRKELGIEDDVKLLILNFGGQPAGWKLK 240
LIRLPGYCPMPAFRDVIDVPLVVRRLHKSRKEVRKELGI +DV ++ILNFGGQP+GW LK
Sbjct: 231 LIRLPGYCPMPAFRDVIDVPLVVRRLHKSRKEVRKELGIAEDVNVVILNFGGQPSGWNLK 290
Query: 241 EEYLPSGWKCLVCGASDS-QLPPNFIKLPKDAYTPDFMAASDCMLGKIGYGTVSEALAYK 299
E LP+GW CLVCGAS++ +LPPNFIKL KDAYTPD +AASDCMLGKIGYGTVSEAL+YK
Sbjct: 291 ETSLPTGWLCLVCGASETLELPPNFIKLAKDAYTPDIIAASDCMLGKIGYGTVSEALSYK 350
Query: 300 LPFVFVRRDYFNEEPFLRNMLEFYQGGVEMIRRDLLTGHWKPYLERAISLKPCYEGGING 359
+PFVFVRRDYFNEEPFLRNMLEFYQ GVEMIRRDLL G W PYLERA+SLKPCYEGGING
Sbjct: 351 VPFVFVRRDYFNEEPFLRNMLEFYQCGVEMIRRDLLMGQWTPYLERAVSLKPCYEGGING 410
Query: 360 GEVAAHILQETAIGKNYASDKLSGARRLRDAIIFGYELQRVPGRDVSIPEWYQTAEDELG 419
GE+AAHILQETAIG++ ASDKLSGARRLRDAII GY+LQRVPGRD++IPEWY AE+ELG
Sbjct: 411 GEIAAHILQETAIGRHCASDKLSGARRLRDAIILGYQLQRVPGRDIAIPEWYSRAENELG 470
Query: 420 LSASRSPPCTP-EGDSTVKLSTEDFEILHGDCQGLPDTMSFLKSLVELDIIKDSDRTPEK 478
SA SP E +S V+ +DF+IL GD QGL DT +FLKSL LD I DS+++ EK
Sbjct: 471 QSAGSSPTVQANENNSLVESCIDDFDILQGDVQGLSDTCTFLKSLAMLDAIHDSEKSTEK 530
Query: 479 RQMRERKAAAGLFNWEEEIFVARAPGRLDVMGGIADYSGSLVLQMPIREACHVALQKISP 538
+ +RERKAA GLFNWEEEIFVARAPGRLDVMGGIADYSGSLVLQMPIREACHVA+Q+ P
Sbjct: 531 KTVRERKAAGGLFNWEEEIFVARAPGRLDVMGGIADYSGSLVLQMPIREACHVAVQRNLP 590
Query: 539 SKQRLWKHALARHNDKGQGPMPVLQIVSYGSELSNRGPTFDMDLSDFMDEGKPMSYEKAK 598
K RLWKHA AR KGQ P PVLQIVSYGSE+SNR PTFDMDLSDFMD +P+SYEKA+
Sbjct: 591 GKHRLWKHAQARQQAKGQVPTPVLQIVSYGSEISNRAPTFDMDLSDFMDGDEPISYEKAR 650
Query: 599 KYFDTNPSQKWAAYVAGTILVLMTELGVRFEDSISMLVSSAVPEGKGVSSSASVEVASMS 658
K+F +P+QKWAAYVAGTILVLM ELGVRFEDSIS+LVSSAVPEGKGVSSSA+VEVASMS
Sbjct: 651 KFFAQDPAQKWAAYVAGTILVLMIELGVRFEDSISLLVSSAVPEGKGVSSSAAVEVASMS 710
Query: 659 AIAAAHGLNIHPRDLALLCQKVENHIVGAPCGVMDQMASACGEANKLLAMVCQPAELLGV 718
AIAAAHGL+I PRDLA+LCQKVENHIVGAPCGVMDQM S+CGEANKLLAM+CQPAE++G+
Sbjct: 711 AIAAAHGLSIDPRDLAILCQKVENHIVGAPCGVMDQMTSSCGEANKLLAMICQPAEVVGL 770
Query: 719 VEIPSHIRFWGIDSGIRHSVGGADYGSVRAGAFMGRKMIKSTASGMLPQSLPSSNGLNNI 778
VEIP+H+RFWGIDSGIRHSVGGADY SVR GA+MGRKMIKS AS +L S S+NG N
Sbjct: 771 VEIPNHVRFWGIDSGIRHSVGGADYRSVRVGAYMGRKMIKSMASSILSPSASSANGGNPE 830
Query: 779 EPEVDGVELLEAEASLDYLCNLSPHRFEALYAKNIPESIVEHQFVILY 826
E E +G++LLEAEASLDYLCNLSPHR+EA YA +P+ ++ F+ Y
Sbjct: 831 ELEDEGIDLLEAEASLDYLCNLSPHRYEARYADKLPDIMLGQTFIEEY 878
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|2326372|emb|CAA74753.1| putative arabinose kinase [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 1381 bits (3575), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 671/828 (81%), Positives = 738/828 (89%), Gaps = 2/828 (0%)
Query: 1 MRINETDGVSASSKHLVFAYYVTGHGFGHATRVVEVVRNLISAGHDVHVVTGAPDFVFTS 60
MRI+E +GVSASSKHLVFAYYVTGHGFGHATRVVEVVR+LI+AGHDVHVVTGAPDFVFTS
Sbjct: 1 MRIDENEGVSASSKHLVFAYYVTGHGFGHATRVVEVVRHLIAAGHDVHVVTGAPDFVFTS 60
Query: 61 EIQSPRLFIRKVLLDCGAVQADALTVDRLASLEKYSETAVAPRKSILKDEVEWLNSIKAD 120
EIQSPRL IRKVLLDCGAVQADALTVDRLASLEKY ETAV PR IL+ EVEWL+SIKAD
Sbjct: 61 EIQSPRLKIRKVLLDCGAVQADALTVDRLASLEKYVETAVVPRAEILETEVEWLHSIKAD 120
Query: 121 LVVSDVVPVACRAAADAGIRSVCVTNFSWDFIYAEYVMAAGHHHRSIVWQIAEDYSHCEF 180
VVSDVVPVACRAAADAGIRSVCVTNFSWDFIYAEYVMAAG+HHRSIVWQIAEDYSHCEF
Sbjct: 121 FVVSDVVPVACRAAADAGIRSVCVTNFSWDFIYAEYVMAAGYHHRSIVWQIAEDYSHCEF 180
Query: 181 LIRLPGYCPMPAFRDVIDVPLVVRRLHKSRKEVRKELGIEDDVKLLILNFGGQPAGWKLK 240
LIRLPGYCPMPAFRDVIDVPLVVRRLHKSRKEVRKELGI +DV ++ILNFGGQP+GW LK
Sbjct: 181 LIRLPGYCPMPAFRDVIDVPLVVRRLHKSRKEVRKELGIAEDVNVVILNFGGQPSGWNLK 240
Query: 241 EEYLPSGWKCLVCGASDS-QLPPNFIKLPKDAYTPDFMAASDCMLGKIGYGTVSEALAYK 299
E LP+GW CLVCGAS++ +LPPNFIKL KDAYTPD +AASDCMLGKIGYGTVSEAL+YK
Sbjct: 241 ETSLPTGWLCLVCGASETLELPPNFIKLAKDAYTPDIIAASDCMLGKIGYGTVSEALSYK 300
Query: 300 LPFVFVRRDYFNEEPFLRNMLEFYQGGVEMIRRDLLTGHWKPYLERAISLKPCYEGGING 359
+PFVFVRRDYFNEEPFLRNMLEFYQ GVEMIRRDLL G W PYLERA+SLKPCYEGGING
Sbjct: 301 VPFVFVRRDYFNEEPFLRNMLEFYQCGVEMIRRDLLMGQWTPYLERAVSLKPCYEGGING 360
Query: 360 GEVAAHILQETAIGKNYASDKLSGARRLRDAIIFGYELQRVPGRDVSIPEWYQTAEDELG 419
GE+AAHILQETAIG++ ASDKLSGARRLRDAII GY+LQRVPGRD++IPEWY AE+ELG
Sbjct: 361 GEIAAHILQETAIGRHCASDKLSGARRLRDAIILGYQLQRVPGRDIAIPEWYSRAENELG 420
Query: 420 LSASRSPPCTP-EGDSTVKLSTEDFEILHGDCQGLPDTMSFLKSLVELDIIKDSDRTPEK 478
SA SP E +S V+ +DF+IL GD QGL DT +FLKSL LD I DS+++ EK
Sbjct: 421 QSAGSSPTVQANENNSLVESCIDDFDILQGDVQGLSDTCTFLKSLAMLDAIHDSEKSTEK 480
Query: 479 RQMRERKAAAGLFNWEEEIFVARAPGRLDVMGGIADYSGSLVLQMPIREACHVALQKISP 538
+ +RERKAA GLFNWEEEIFVARAPGRLDVMGGIADYSGSLVLQMPIREACHVA Q+ P
Sbjct: 481 KTVRERKAAGGLFNWEEEIFVARAPGRLDVMGGIADYSGSLVLQMPIREACHVAAQRNLP 540
Query: 539 SKQRLWKHALARHNDKGQGPMPVLQIVSYGSELSNRGPTFDMDLSDFMDEGKPMSYEKAK 598
K RLWKHA AR KGQ P PVLQIVSYGSE+SNR PTFDMDLSDFMD +P+SYEKA+
Sbjct: 541 GKHRLWKHAQARQQAKGQVPTPVLQIVSYGSEISNRAPTFDMDLSDFMDGDEPISYEKAR 600
Query: 599 KYFDTNPSQKWAAYVAGTILVLMTELGVRFEDSISMLVSSAVPEGKGVSSSASVEVASMS 658
K+F +P+QKWAAYVAGTILVLM ELGVRFEDSIS+LVSSAVPEGKGVSSSA+VEVASMS
Sbjct: 601 KFFAQDPAQKWAAYVAGTILVLMIELGVRFEDSISLLVSSAVPEGKGVSSSAAVEVASMS 660
Query: 659 AIAAAHGLNIHPRDLALLCQKVENHIVGAPCGVMDQMASACGEANKLLAMVCQPAELLGV 718
AIAAAHGL+I PRDLA+LCQKVENHIVGAPCGVMDQM S+CGEANKLLAM+CQPAE++G+
Sbjct: 661 AIAAAHGLSIDPRDLAILCQKVENHIVGAPCGVMDQMTSSCGEANKLLAMICQPAEVVGL 720
Query: 719 VEIPSHIRFWGIDSGIRHSVGGADYGSVRAGAFMGRKMIKSTASGMLPQSLPSSNGLNNI 778
VEIP+H+RFWGIDSGIRHSVGGADY SVR GA+MGRKMIKS AS +L S S+NG N
Sbjct: 721 VEIPNHVRFWGIDSGIRHSVGGADYRSVRVGAYMGRKMIKSMASSILSPSASSANGGNPE 780
Query: 779 EPEVDGVELLEAEASLDYLCNLSPHRFEALYAKNIPESIVEHQFVILY 826
E E +G++LLEAEASLDYLCNLSPHR+EA YA +P+ ++ F+ Y
Sbjct: 781 ELEDEGIDLLEAEASLDYLCNLSPHRYEARYADKLPDIMLGQTFIEEY 828
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356563759|ref|XP_003550127.1| PREDICTED: L-arabinokinase-like isoform 1 [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1370 bits (3547), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 678/828 (81%), Positives = 732/828 (88%), Gaps = 14/828 (1%)
Query: 1 MRI-NETDGVSASSKHLVFAYYVTGHGFGHATRVVEVVRNLISAGHDVHVVTGAPDFVFT 59
MRI E+DGVSAS+KHLVFAYYVTGHGFGHATRV EVVR+LI AGHDVHVVTGAPDFVFT
Sbjct: 1 MRIEQESDGVSASTKHLVFAYYVTGHGFGHATRVTEVVRHLILAGHDVHVVTGAPDFVFT 60
Query: 60 SEIQSPRLFIRKVLLDCGAVQADALTVDRLASLEKYSETAVAPRKSILKDEVEWLNSIKA 119
SEIQSPRLFIRKVLLDCGAVQADALTVDRLASLEKYSETAV PR IL E EWLNS+KA
Sbjct: 61 SEIQSPRLFIRKVLLDCGAVQADALTVDRLASLEKYSETAVKPRAQILAQETEWLNSVKA 120
Query: 120 DLVVSDVVPVACRAAADAGIRSVCVTNFSWDFIYAEYVMAAGHHHRSIVWQIAEDYSHCE 179
DLVVSDVVPVACRAAADAGIRSVCVTNFSWDFIYAEYVMAAG HHRSIVWQIAEDYSHCE
Sbjct: 121 DLVVSDVVPVACRAAADAGIRSVCVTNFSWDFIYAEYVMAAGLHHRSIVWQIAEDYSHCE 180
Query: 180 FLIRLPGYCPMPAFRDVIDVPLVVRRLHKSRKEVRKELGIEDDVKLLILNFGGQPAGWKL 239
FLIRLPGYCPMPAFRDVIDVPLVVRRLHKS KEV+KELG+ DDVKL+ILNFGGQP+ KL
Sbjct: 181 FLIRLPGYCPMPAFRDVIDVPLVVRRLHKSAKEVKKELGVTDDVKLVILNFGGQPSELKL 240
Query: 240 KEEYLPSGWKCLVCGASDS-QLPPNFIKLPKDAYTPDFMAASDCMLGKIGYGTVSEALAY 298
KEE+LP GW CLVCGAS++ +LPPNF+KL KDAYTPD +AASDCMLGKIGYGTVSEALAY
Sbjct: 241 KEEFLPPGWLCLVCGASETAELPPNFVKLAKDAYTPDIIAASDCMLGKIGYGTVSEALAY 300
Query: 299 KLPFVFVRRDYFNEEPFLRNMLEFYQGGVEMIRRDLLTGHWKPYLERAISLKPCYEGGIN 358
K PFVFVRRDYFNEEPFLRNMLEFYQGGVEMIRRDLLTGHW+PYLERAISLKPCYE GIN
Sbjct: 301 KCPFVFVRRDYFNEEPFLRNMLEFYQGGVEMIRRDLLTGHWRPYLERAISLKPCYEAGIN 360
Query: 359 GGEVAAHILQETAIGKNYASDKLSGARRLRDAIIFGYELQRVPGRDVSIPEWYQTAEDEL 418
GGEVAAHILQETA GK+YASDKLSGARRLRDAI+ GY+LQR PGRD++IPEWY TAE++L
Sbjct: 361 GGEVAAHILQETAFGKSYASDKLSGARRLRDAIVLGYQLQRAPGRDITIPEWYATAENQL 420
Query: 419 GLSASRSPPCTPEGDSTVKLSTEDFEILHGDCQGLPDTMSFLKSLVELDIIKDSDRTPEK 478
G + SP +G S L E+F+ILHGD QGLPDT++FL++L EL +K
Sbjct: 421 GRTTPGSP--VDDGRSAFSLDIENFDILHGDIQGLPDTVAFLQNLSELQ---------DK 469
Query: 479 RQMRERKAAAGLFNWEEEIFVARAPGRLDVMGGIADYSGSLVLQMPIREACHVALQKISP 538
RERKAAA LFNWEEEIFV RAPGRLDV+GGIADYSGSLVLQMPI+EACHVALQ+ P
Sbjct: 470 HTRRERKAAANLFNWEEEIFVTRAPGRLDVIGGIADYSGSLVLQMPIKEACHVALQRNHP 529
Query: 539 SKQRLWKHALARHNDKGQGPMPVLQIVSYGSELSNRGPTFDMDLSDFMDEGKPMSYEKAK 598
SK RLWKHA AR NDKG+ P VLQIVS+GSELSNRGPTFDMDLSDFMDE KP+SYEKAK
Sbjct: 530 SKHRLWKHAEARQNDKGRNPTAVLQIVSFGSELSNRGPTFDMDLSDFMDEDKPISYEKAK 589
Query: 599 KYFDTNPSQKWAAYVAGTILVLMTELGVRFEDSISMLVSSAVPEGKGVSSSASVEVASMS 658
KYF +PSQKWAAYVAG ILVLMTELGV+FEDSISMLVSSAVPEGKGVSSSASVEVASM
Sbjct: 590 KYFAQDPSQKWAAYVAGAILVLMTELGVQFEDSISMLVSSAVPEGKGVSSSASVEVASMY 649
Query: 659 AIAAAHGLNIHPRDLALLCQKVENHIVGAPCGVMDQMASACGEANKLLAMVCQPAELLGV 718
AIAAAHGLNI PR LA+LCQKVENHIVGAPCGVMDQMASACGEANKLLAM+CQPAE++G+
Sbjct: 650 AIAAAHGLNISPRHLAILCQKVENHIVGAPCGVMDQMASACGEANKLLAMICQPAEIVGL 709
Query: 719 VEIPSHIRFWGIDSGIRHSVGGADYGSVRAGAFMGRKMIKSTASGMLPQSLPSSNGLNNI 778
V+IPSHIRFWGIDSGIRHSVGGADYGSVR GAFMG KMIK+ AS L ++ ++NGL+
Sbjct: 710 VDIPSHIRFWGIDSGIRHSVGGADYGSVRIGAFMGMKMIKAKASEELSETC-AANGLSYD 768
Query: 779 EPEVDGVELLEAEASLDYLCNLSPHRFEALYAKNIPESIVEHQFVILY 826
E E D +ELL+ E SLDYLCNL PHRF LYAK IPESIV F+ Y
Sbjct: 769 EVEQDDIELLKQETSLDYLCNLPPHRFVTLYAKTIPESIVGETFLEQY 816
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449438813|ref|XP_004137182.1| PREDICTED: L-arabinokinase-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 1355 bits (3506), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 676/831 (81%), Positives = 736/831 (88%), Gaps = 6/831 (0%)
Query: 1 MRI--NETDGVSASSKHLVFAYYVTGHGFGHATRVVEVVRNLISAGHDVHVVTGAPDFVF 58
MRI + VSAS HLVFAYYVTGHGFGHATRV+EVVR+LI AGHDVHVV+GAP+FVF
Sbjct: 1 MRIVKEAEEAVSASRNHLVFAYYVTGHGFGHATRVIEVVRHLILAGHDVHVVSGAPEFVF 60
Query: 59 TSEIQSPRLFIRKVLLDCGAVQADALTVDRLASLEKYSETAVAPRKSILKDEVEWLNSIK 118
TS IQSPRLFIRKVLLDCGAVQADALTVDRLASLEKY ETAV PR SIL EVEWLNSIK
Sbjct: 61 TSAIQSPRLFIRKVLLDCGAVQADALTVDRLASLEKYHETAVVPRASILATEVEWLNSIK 120
Query: 119 ADLVVSDVVPVACRAAADAGIRSVCVTNFSWDFIYAEYVMAAGHHHRSIVWQIAEDYSHC 178
ADLVVSDVVPVACRAAADAGIRSVCVTNFSWDFIYAEYVMAAGH+HRSIVWQIAEDYSHC
Sbjct: 121 ADLVVSDVVPVACRAAADAGIRSVCVTNFSWDFIYAEYVMAAGHYHRSIVWQIAEDYSHC 180
Query: 179 EFLIRLPGYCPMPAFRDVIDVPLVVRRLHKSRKEVRKELGIEDDVKLLILNFGGQPAGWK 238
EFLIRLPGYCPMPAFRDV+DVPLVVRRLHK RKEVRKEL I +D KL+ILNFGGQPAGWK
Sbjct: 181 EFLIRLPGYCPMPAFRDVVDVPLVVRRLHKQRKEVRKELEIGEDTKLVILNFGGQPAGWK 240
Query: 239 LKEEYLPSGWKCLVCGASDSQ-LPPNFIKLPKDAYTPDFMAASDCMLGKIGYGTVSEALA 297
LKEEYLP GW CLVCGAS+++ LPPNFIKL KDAYTPD +AASDCMLGKIGYGTVSEALA
Sbjct: 241 LKEEYLPPGWLCLVCGASETEELPPNFIKLAKDAYTPDLIAASDCMLGKIGYGTVSEALA 300
Query: 298 YKLPFVFVRRDYFNEEPFLRNMLEFYQGGVEMIRRDLLTGHWKPYLERAISLKPCYEGGI 357
YKLPFVFVRRDYFNEEPFLRNMLE+YQ GVEMIRRDLLTGHWKPYLERAISLKPCYEGG
Sbjct: 301 YKLPFVFVRRDYFNEEPFLRNMLEYYQSGVEMIRRDLLTGHWKPYLERAISLKPCYEGGT 360
Query: 358 NGGEVAAHILQETAIGKNYASDKLSGARRLRDAIIFGYELQRVPGRDVSIPEWYQTAEDE 417
NGGEVAAHILQETA GKNYASDK SGARRLRDAI+ GY+LQR PGRD+ IP+W+ AE E
Sbjct: 361 NGGEVAAHILQETASGKNYASDKFSGARRLRDAIVLGYQLQRAPGRDLCIPDWFANAESE 420
Query: 418 LGLSASRSPPCTPEG-DSTVKLSTEDFEILHGDCQGLPDTMSFLKSLVELDIIKDSDRTP 476
LGL ++SP EG + ++ E F++LHGD QGLPDTMSFLKSL EL+ + DS
Sbjct: 421 LGLP-NKSPTLPVEGRGAHMESYMEHFDVLHGDVQGLPDTMSFLKSLAELNSVYDSG-MA 478
Query: 477 EKRQMRERKAAAGLFNWEEEIFVARAPGRLDVMGGIADYSGSLVLQMPIREACHVALQKI 536
EKRQMRE+KAAAGLFNWEEEIFV RAPGRLDVMGGIADYSGSLVLQ+PIREACHVALQ+
Sbjct: 479 EKRQMREQKAAAGLFNWEEEIFVTRAPGRLDVMGGIADYSGSLVLQLPIREACHVALQRN 538
Query: 537 SPSKQRLWKHALARHNDKGQGPMPVLQIVSYGSELSNRGPTFDMDLSDFMDEGKPMSYEK 596
P+K RLWKHA AR N KG+G PVLQIVSYGSELSNR PTFDMDLSDFMD PMSYEK
Sbjct: 539 HPTKHRLWKHAQARQNAKGEGSKPVLQIVSYGSELSNRAPTFDMDLSDFMDGEGPMSYEK 598
Query: 597 AKKYFDTNPSQKWAAYVAGTILVLMTELGVRFEDSISMLVSSAVPEGKGVSSSASVEVAS 656
A+KYF +P+QKWAAY+AGTILVLM ELGVRFEDSIS+LVSS VPEGKGVSSSASVEVAS
Sbjct: 599 ARKYFAQDPAQKWAAYIAGTILVLMRELGVRFEDSISLLVSSTVPEGKGVSSSASVEVAS 658
Query: 657 MSAIAAAHGLNIHPRDLALLCQKVENHIVGAPCGVMDQMASACGEANKLLAMVCQPAELL 716
MSAIAAAHGL+I PRDLALLCQKVENHIVGAPCGVMDQM SACGEA+KLLAMVCQPAE++
Sbjct: 659 MSAIAAAHGLSISPRDLALLCQKVENHIVGAPCGVMDQMTSACGEADKLLAMVCQPAEVI 718
Query: 717 GVVEIPSHIRFWGIDSGIRHSVGGADYGSVRAGAFMGRKMIKSTASGMLPQSLPSSNGLN 776
G+V+IP HIRFWGIDSGIRHSVGGADYGSVR GAFMGR+MIKS AS +L S +NG++
Sbjct: 719 GLVDIPGHIRFWGIDSGIRHSVGGADYGSVRIGAFMGRRMIKSRASELLSNSSSLANGIS 778
Query: 777 NIEPEVDGVELLEAEASLDYLCNLSPHRFEALYAKNIPESIVEHQFVILYT 827
+ + E DG+ELLE+E+SL YLCNL PHR+EA+YAK +PE+I F+ Y+
Sbjct: 779 HDDLEDDGIELLESESSLYYLCNLPPHRYEAIYAKQLPETITGEAFMEKYS 829
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356563761|ref|XP_003550128.1| PREDICTED: L-arabinokinase-like isoform 2 [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1340 bits (3468), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 668/828 (80%), Positives = 722/828 (87%), Gaps = 25/828 (3%)
Query: 1 MRI-NETDGVSASSKHLVFAYYVTGHGFGHATRVVEVVRNLISAGHDVHVVTGAPDFVFT 59
MRI E+DGVSAS+KHLVFAYYVTGHGFGHATRV EVVR+LI AGHDVHVVTGAPDFVFT
Sbjct: 1 MRIEQESDGVSASTKHLVFAYYVTGHGFGHATRVTEVVRHLILAGHDVHVVTGAPDFVFT 60
Query: 60 SEIQSPRLFIRKVLLDCGAVQADALTVDRLASLEKYSETAVAPRKSILKDEVEWLNSIKA 119
SEIQSPRLFIRKVLLDCGAVQADALTVDRLASLEKYSETAV PR IL E EWLNS+KA
Sbjct: 61 SEIQSPRLFIRKVLLDCGAVQADALTVDRLASLEKYSETAVKPRAQILAQETEWLNSVKA 120
Query: 120 DLVVSDVVPVACRAAADAGIRSVCVTNFSWDFIYAEYVMAAGHHHRSIVWQIAEDYSHCE 179
DLVVSDVVPVACRAAADAGIRSVCVTNFSWDFIYAEYVMA IAEDYSHCE
Sbjct: 121 DLVVSDVVPVACRAAADAGIRSVCVTNFSWDFIYAEYVMA-----------IAEDYSHCE 169
Query: 180 FLIRLPGYCPMPAFRDVIDVPLVVRRLHKSRKEVRKELGIEDDVKLLILNFGGQPAGWKL 239
FLIRLPGYCPMPAFRDVIDVPLVVRRLHKS KEV+KELG+ DDVKL+ILNFGGQP+ KL
Sbjct: 170 FLIRLPGYCPMPAFRDVIDVPLVVRRLHKSAKEVKKELGVTDDVKLVILNFGGQPSELKL 229
Query: 240 KEEYLPSGWKCLVCGASDS-QLPPNFIKLPKDAYTPDFMAASDCMLGKIGYGTVSEALAY 298
KEE+LP GW CLVCGAS++ +LPPNF+KL KDAYTPD +AASDCMLGKIGYGTVSEALAY
Sbjct: 230 KEEFLPPGWLCLVCGASETAELPPNFVKLAKDAYTPDIIAASDCMLGKIGYGTVSEALAY 289
Query: 299 KLPFVFVRRDYFNEEPFLRNMLEFYQGGVEMIRRDLLTGHWKPYLERAISLKPCYEGGIN 358
K PFVFVRRDYFNEEPFLRNMLEFYQGGVEMIRRDLLTGHW+PYLERAISLKPCYE GIN
Sbjct: 290 KCPFVFVRRDYFNEEPFLRNMLEFYQGGVEMIRRDLLTGHWRPYLERAISLKPCYEAGIN 349
Query: 359 GGEVAAHILQETAIGKNYASDKLSGARRLRDAIIFGYELQRVPGRDVSIPEWYQTAEDEL 418
GGEVAAHILQETA GK+YASDKLSGARRLRDAI+ GY+LQR PGRD++IPEWY TAE++L
Sbjct: 350 GGEVAAHILQETAFGKSYASDKLSGARRLRDAIVLGYQLQRAPGRDITIPEWYATAENQL 409
Query: 419 GLSASRSPPCTPEGDSTVKLSTEDFEILHGDCQGLPDTMSFLKSLVELDIIKDSDRTPEK 478
G + SP +G S L E+F+ILHGD QGLPDT++FL++L EL +K
Sbjct: 410 GRTTPGSP--VDDGRSAFSLDIENFDILHGDIQGLPDTVAFLQNLSELQ---------DK 458
Query: 479 RQMRERKAAAGLFNWEEEIFVARAPGRLDVMGGIADYSGSLVLQMPIREACHVALQKISP 538
RERKAAA LFNWEEEIFV RAPGRLDV+GGIADYSGSLVLQMPI+EACHVALQ+ P
Sbjct: 459 HTRRERKAAANLFNWEEEIFVTRAPGRLDVIGGIADYSGSLVLQMPIKEACHVALQRNHP 518
Query: 539 SKQRLWKHALARHNDKGQGPMPVLQIVSYGSELSNRGPTFDMDLSDFMDEGKPMSYEKAK 598
SK RLWKHA AR NDKG+ P VLQIVS+GSELSNRGPTFDMDLSDFMDE KP+SYEKAK
Sbjct: 519 SKHRLWKHAEARQNDKGRNPTAVLQIVSFGSELSNRGPTFDMDLSDFMDEDKPISYEKAK 578
Query: 599 KYFDTNPSQKWAAYVAGTILVLMTELGVRFEDSISMLVSSAVPEGKGVSSSASVEVASMS 658
KYF +PSQKWAAYVAG ILVLMTELGV+FEDSISMLVSSAVPEGKGVSSSASVEVASM
Sbjct: 579 KYFAQDPSQKWAAYVAGAILVLMTELGVQFEDSISMLVSSAVPEGKGVSSSASVEVASMY 638
Query: 659 AIAAAHGLNIHPRDLALLCQKVENHIVGAPCGVMDQMASACGEANKLLAMVCQPAELLGV 718
AIAAAHGLNI PR LA+LCQKVENHIVGAPCGVMDQMASACGEANKLLAM+CQPAE++G+
Sbjct: 639 AIAAAHGLNISPRHLAILCQKVENHIVGAPCGVMDQMASACGEANKLLAMICQPAEIVGL 698
Query: 719 VEIPSHIRFWGIDSGIRHSVGGADYGSVRAGAFMGRKMIKSTASGMLPQSLPSSNGLNNI 778
V+IPSHIRFWGIDSGIRHSVGGADYGSVR GAFMG KMIK+ AS L ++ ++NGL+
Sbjct: 699 VDIPSHIRFWGIDSGIRHSVGGADYGSVRIGAFMGMKMIKAKASEELSETC-AANGLSYD 757
Query: 779 EPEVDGVELLEAEASLDYLCNLSPHRFEALYAKNIPESIVEHQFVILY 826
E E D +ELL+ E SLDYLCNL PHRF LYAK IPESIV F+ Y
Sbjct: 758 EVEQDDIELLKQETSLDYLCNLPPHRFVTLYAKTIPESIVGETFLEQY 805
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357436679|ref|XP_003588615.1| Galactokinase like protein [Medicago truncatula] gi|355477663|gb|AES58866.1| Galactokinase like protein [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 1329 bits (3439), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 661/830 (79%), Positives = 717/830 (86%), Gaps = 22/830 (2%)
Query: 1 MRINETDG-VSASSKHLVFAYYVTGHGFGHATRVVEVVRNLISAGHDVHVVTGAPDFVFT 59
MRI++ G VS+S KHLVFAYY+TGHGFGHATRV EV R+LI AGHDVH+VTGAPDFVFT
Sbjct: 1 MRIDQESGAVSSSRKHLVFAYYITGHGFGHATRVTEVARHLIDAGHDVHLVTGAPDFVFT 60
Query: 60 SEIQSPRLFIRKVLLDCGAVQADALTVDRLASLEKYSETAVAPRKSILKDEVEWLNSIKA 119
SEI+SPRLFIRKVLLDCGAVQADALTVDRLASLEKYSETAV PR IL E EWLNSIKA
Sbjct: 61 SEIKSPRLFIRKVLLDCGAVQADALTVDRLASLEKYSETAVKPRAQILTSETEWLNSIKA 120
Query: 120 DLVVSDVVPVACRAAADAGIRSVCVTNFSWDFIYAEYVMAAGHHHRSIVWQIAEDYSHCE 179
DLVVSDVVPVACRAAADAGIRSVCVTNFSWDFIYAEYVMAAG HHRSIVWQIAEDYSHCE
Sbjct: 121 DLVVSDVVPVACRAAADAGIRSVCVTNFSWDFIYAEYVMAAGLHHRSIVWQIAEDYSHCE 180
Query: 180 FLIRLPGYCPMPAFRDVIDVPLVVRRLHKSRKEVRKELGIEDDVKLLILNFGGQPAGWKL 239
FLIRLPGYCPMPAFRDVIDVPLVVRRLHKS KEVRKEL + D VKL+ILNFGGQP+GWK+
Sbjct: 181 FLIRLPGYCPMPAFRDVIDVPLVVRRLHKSAKEVRKELNVPDGVKLVILNFGGQPSGWKI 240
Query: 240 KEEYLPSGWKCLVCGASD-SQLPPNFIKLPKDAYTPDFMAASDCMLGKIGYGTVSEALAY 298
KE++LP GW CLVCGASD + LPPNF KL KDAYTPD +AA DCMLGKIGYGTVSEALAY
Sbjct: 241 KEDFLPPGWLCLVCGASDNADLPPNFRKLAKDAYTPDIIAACDCMLGKIGYGTVSEALAY 300
Query: 299 KLPFVFVRRDYFNEEPFLRNMLEFYQGGVEMIRRDLLTGHWKPYLERAISLKPCYEGGIN 358
K PFVFVRRDYFNEEPFLRNMLE+ Q GVEMIRRDL+TGHW+PYLERAISLKPCY+ GIN
Sbjct: 301 KCPFVFVRRDYFNEEPFLRNMLEYSQCGVEMIRRDLITGHWRPYLERAISLKPCYDTGIN 360
Query: 359 GGEVAAHILQETAIGKNYASDKLSGARRLRDAIIFGYELQRVPGRDVSIPEWYQTAEDEL 418
GGEVAAHILQETA GKNYASDKLSGARRLRDAI+ GY+LQR PGRD++IPEWY +AED+
Sbjct: 361 GGEVAAHILQETAFGKNYASDKLSGARRLRDAIVLGYQLQRAPGRDIAIPEWYASAEDQ- 419
Query: 419 GLSASRSPPCTP--EGDSTVKLSTEDFEILHGDCQGLPDTMSFLKSLVELDIIKDSDRTP 476
P +P G EDF+ILHGD QGLPDT++FL+SL EL +
Sbjct: 420 -------QPGSPVNSGGYAFHSGIEDFDILHGDVQGLPDTVAFLQSLSELVV-------- 464
Query: 477 EKRQMRERKAAAGLFNWEEEIFVARAPGRLDVMGGIADYSGSLVLQMPIREACHVALQKI 536
K RERKAAA LFNWEEEIFV RAPGRLDVMGGIADYSGSLVLQMPIREACHVALQ++
Sbjct: 465 -KHTKRERKAAANLFNWEEEIFVTRAPGRLDVMGGIADYSGSLVLQMPIREACHVALQRV 523
Query: 537 SPSKQRLWKHALARHNDKGQGPMPVLQIVSYGSELSNRGPTFDMDLSDFMDEGKPMSYEK 596
PSK RLWKHA AR NDKG VLQIVSYGSEL NR PTFDMDLSDFMD GKP+SYEK
Sbjct: 524 HPSKHRLWKHAEARQNDKGGPHTAVLQIVSYGSELGNRAPTFDMDLSDFMDGGKPISYEK 583
Query: 597 AKKYFDTNPSQKWAAYVAGTILVLMTELGVRFEDSISMLVSSAVPEGKGVSSSASVEVAS 656
A+KYF +P+QKWAAYVAG ILVLMTEL V+FEDSISMLVSSAVPEGKGVSSSASVEVAS
Sbjct: 584 ARKYFAQDPAQKWAAYVAGAILVLMTELDVKFEDSISMLVSSAVPEGKGVSSSASVEVAS 643
Query: 657 MSAIAAAHGLNIHPRDLALLCQKVENHIVGAPCGVMDQMASACGEANKLLAMVCQPAELL 716
MSAIAA+HGLNI RDLALLCQKVENHIVGAPCGVMDQMASACGEANKLLAM+CQPAE++
Sbjct: 644 MSAIAASHGLNIGSRDLALLCQKVENHIVGAPCGVMDQMASACGEANKLLAMICQPAEIV 703
Query: 717 GVVEIPSHIRFWGIDSGIRHSVGGADYGSVRAGAFMGRKMIKSTASGMLPQSLPSSNGLN 776
G+VEIP+HIR WGIDSGIRHSVGGADYGSVR G FMG KMIKS AS L + + ++NGLN
Sbjct: 704 GLVEIPNHIRVWGIDSGIRHSVGGADYGSVRIGTFMGMKMIKSKASTELTE-MSAANGLN 762
Query: 777 NIEPEVDGVELLEAEASLDYLCNLSPHRFEALYAKNIPESIVEHQFVILY 826
+ E E D +ELL+ E SLDYLCNL+PHRF ALYAK +PE+I +F+ Y
Sbjct: 763 SDEVEQDDIELLKQETSLDYLCNLTPHRFMALYAKTLPETIDGDKFLKEY 812
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 838 | ||||||
| TAIR|locus:2130105 | 1039 | ARA1 "arabinose kinase" [Arabi | 0.985 | 0.794 | 0.789 | 0.0 | |
| TAIR|locus:2078516 | 964 | AT3G42850 [Arabidopsis thalian | 0.885 | 0.769 | 0.740 | 4e-303 | |
| UNIPROTKB|Q9KRP1 | 386 | galK "Galactokinase" [Vibrio c | 0.167 | 0.362 | 0.286 | 1.8e-10 | |
| TIGR_CMR|VC_1595 | 386 | VC_1595 "galactokinase" [Vibri | 0.167 | 0.362 | 0.286 | 1.8e-10 | |
| MGI|MGI:95730 | 391 | Galk1 "galactokinase 1" [Mus m | 0.227 | 0.488 | 0.258 | 4.5e-08 | |
| UNIPROTKB|P0A6T3 | 382 | galK [Escherichia coli K-12 (t | 0.177 | 0.390 | 0.269 | 5.1e-08 | |
| UNIPROTKB|Q9GKK4 | 392 | GALK1 "Galactokinase" [Canis l | 0.227 | 0.487 | 0.248 | 9.9e-08 | |
| UNIPROTKB|F1RVY7 | 420 | GALK1 "Uncharacterized protein | 0.225 | 0.45 | 0.256 | 1.4e-07 | |
| RGD|1305375 | 392 | Galk1 "galactokinase 1" [Rattu | 0.225 | 0.482 | 0.256 | 1.7e-07 | |
| UNIPROTKB|P51570 | 392 | GALK1 "Galactokinase" [Homo sa | 0.225 | 0.482 | 0.261 | 2.8e-07 |
| TAIR|locus:2130105 ARA1 "arabinose kinase" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 3422 (1209.7 bits), Expect = 0., P = 0.
Identities = 654/828 (78%), Positives = 721/828 (87%)
Query: 1 MRINETDGVSASSKHLVFAYYVTGHGFGHATRVVEVVRNLISAGHDVHVVTGAPDFVFTS 60
MRI+E +GVSASSKHLVFAYYVTGHGFGHATRVVEVVR+LI+AGHDVHVVTGAPDFVFTS
Sbjct: 51 MRIDENEGVSASSKHLVFAYYVTGHGFGHATRVVEVVRHLIAAGHDVHVVTGAPDFVFTS 110
Query: 61 EIQSPRLFIRKVLLDCGAVQADALTVDRLASLEKYSETAVAPRKSILKDEVEWLNSIKAD 120
EIQSPRL IRKVLLDCGAVQADALTVDRLASLEKY ETAV PR IL+ EVEWL+SIKAD
Sbjct: 111 EIQSPRLKIRKVLLDCGAVQADALTVDRLASLEKYVETAVVPRAEILETEVEWLHSIKAD 170
Query: 121 LVVSDVVPVACRAAADAGIRSVCVTNFSWDFIYAEYVMAAGHHHRSIVWQIAEDYSHCEF 180
VVSDVVPVACRAAADAGIRSVCVTNFSWDFIYAEYVMAAG+HHRSIVWQIAEDYSHCEF
Sbjct: 171 FVVSDVVPVACRAAADAGIRSVCVTNFSWDFIYAEYVMAAGYHHRSIVWQIAEDYSHCEF 230
Query: 181 LIRLPGYCPMPAFRDVIDVPLVVRRLHKSRKEVRKELGIEDDVKLLILNFGGQPAGWKLK 240
LIRLPGYCPMPAFRDVIDVPLVVRRLHKSRKEVRKELGI +DV ++ILNFGGQP+GW LK
Sbjct: 231 LIRLPGYCPMPAFRDVIDVPLVVRRLHKSRKEVRKELGIAEDVNVVILNFGGQPSGWNLK 290
Query: 241 EEYLPSGWKCLVCGASDS-QLPPNFIKLPKDAYTPDFMAASDCMLGKIGYGTVSEALAYK 299
E LP+GW CLVCGAS++ +LPPNFIKL KDAYTPD +AASDCMLGKIGYGTVSEAL+YK
Sbjct: 291 ETSLPTGWLCLVCGASETLELPPNFIKLAKDAYTPDIIAASDCMLGKIGYGTVSEALSYK 350
Query: 300 LPFVFVRRDYFNEEPFLRNMLEFYQGGVEMIRRDLLTGHWKPYLERAISLKPCYEGGING 359
+PFVFVRRDYFNEEPFLRNMLEFYQ GVEMIRRDLL G W PYLERA+SLKPCYEGGING
Sbjct: 351 VPFVFVRRDYFNEEPFLRNMLEFYQCGVEMIRRDLLMGQWTPYLERAVSLKPCYEGGING 410
Query: 360 GEVAAHILQETAIGKNYASDKLSGARRLRDAIIFGYELQRVPGRDVSIPEWYQTAEDELG 419
GE+AAHILQETAIG++ ASDKLSGARRLRDAII GY+LQRVPGRD++IPEWY AE+ELG
Sbjct: 411 GEIAAHILQETAIGRHCASDKLSGARRLRDAIILGYQLQRVPGRDIAIPEWYSRAENELG 470
Query: 420 LSASRSPPCTP-EGDSTVKLSTEDFEILHGDCQGLPDTMSFLKSLVELDIIKDSDRTPEK 478
SA SP E +S V+ +DF+IL GD QGL DT +FLKSL LD I DS+++ EK
Sbjct: 471 QSAGSSPTVQANENNSLVESCIDDFDILQGDVQGLSDTCTFLKSLAMLDAIHDSEKSTEK 530
Query: 479 RQMRERKAAAGLFNWEEEIFVARAPGRLDVMGGIADYSGSLVLQMPIREACHVALQKISP 538
+ +RERKAA GLFNWEEEIFVARAPGRLDVMGGIADYSGSLVLQMPIREACHVA+Q+ P
Sbjct: 531 KTVRERKAAGGLFNWEEEIFVARAPGRLDVMGGIADYSGSLVLQMPIREACHVAVQRNLP 590
Query: 539 SKQRLWKHALARHNDKGQGPMPVLQIVSYGSELSNRGPTFDMDLSDFMDEGKPMSYEKAK 598
K RLWKHA AR KGQ P PVLQIVSYGSE+SNR PTFDMDLSDFMD +P+SYEKA+
Sbjct: 591 GKHRLWKHAQARQQAKGQVPTPVLQIVSYGSEISNRAPTFDMDLSDFMDGDEPISYEKAR 650
Query: 599 KYFDTNPSQKWAAYVAGTILVLMTELGVRFEDSISMLVSSAVPEGKGXXXXXXXXXXXXX 658
K+F +P+QKWAAYVAGTILVLM ELGVRFEDSIS+LVSSAVPEGKG
Sbjct: 651 KFFAQDPAQKWAAYVAGTILVLMIELGVRFEDSISLLVSSAVPEGKGVSSSAAVEVASMS 710
Query: 659 XXXXXHGLNIHPRDLALLCQKVENHIVGAPCGVMDQMASACGEANKLLAMVCQPAELLGV 718
HGL+I PRDLA+LCQKVENHIVGAPCGVMDQM S+CGEANKLLAM+CQPAE++G+
Sbjct: 711 AIAAAHGLSIDPRDLAILCQKVENHIVGAPCGVMDQMTSSCGEANKLLAMICQPAEVVGL 770
Query: 719 VEIPSHIRFWGIDSGIRHSVGGADYGSVRAGAFMGRKMIKSTASGMLPQSLPSSNGLNNI 778
VEIP+H+RFWGIDSGIRHSVGGADY SVR GA+MGRKMIKS AS +L S S+NG N
Sbjct: 771 VEIPNHVRFWGIDSGIRHSVGGADYRSVRVGAYMGRKMIKSMASSILSPSASSANGGNPE 830
Query: 779 EPEVDGVELLEAEASLDYLCNLSPHRFEALYAKNIPESIVEHQFVILY 826
E E +G++LLEAEASLDYLCNLSPHR+EA YA +P+ ++ F+ Y
Sbjct: 831 ELEDEGIDLLEAEASLDYLCNLSPHRYEARYADKLPDIMLGQTFIEEY 878
|
|
| TAIR|locus:2078516 AT3G42850 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2909 (1029.1 bits), Expect = 4.0e-303, P = 4.0e-303
Identities = 566/764 (74%), Positives = 629/764 (82%)
Query: 3 INETDGVSASSKHLVFAYYVTGHGFGHATRVVEVVRNLISAGHDVHVVTGAPDFVFTSEI 62
++E++ S+ LVFAYYVTGHGFGHATRVVEVVR LIS+GH VHVV+ AP+FVFT EI
Sbjct: 1 MSESESSSSPRSSLVFAYYVTGHGFGHATRVVEVVRYLISSGHRVHVVSAAPEFVFTMEI 60
Query: 63 QSPRLFIRKVLLDCGAVQADALTVDRLASLEKYSETAVAPRKSILKDEVEWLNSIKADLV 122
SP LFIRKVLLDCG+VQADAL+VDR ASLEKY E AV PR SIL E EWL SIKA+LV
Sbjct: 61 HSPNLFIRKVLLDCGSVQADALSVDRRASLEKYCEIAVEPRDSILATEAEWLKSIKANLV 120
Query: 123 VSDVVPVACRAAADAGIRSVCVTNFSWDFIYAEYVMAAGHHHRSIVWQIAEDYSHCEFLI 182
VSDVVP+ACRAAA+AGIRSVCVTNFSWDFIYAEYVMAAGHHHRSIVWQIAEDYSHCEFLI
Sbjct: 121 VSDVVPIACRAAANAGIRSVCVTNFSWDFIYAEYVMAAGHHHRSIVWQIAEDYSHCEFLI 180
Query: 183 RLPGYCPMPAFRDVIDVPLVVRRLHKSRKEVRKELGIEDDVKLLILNFGGQPAGWKLKEE 242
RLPGYCPMPAF DVID+PLVVR +HKS +EVR+ELG+ D+VKLLI NFGGQP GW LKEE
Sbjct: 181 RLPGYCPMPAFHDVIDIPLVVRPVHKSGQEVRRELGVPDNVKLLIFNFGGQPTGWTLKEE 240
Query: 243 YLPSGWKCLVCGASDSQ-LPPNFIKLPKDAYTPDFMAASDCMLGKIGYGTVSEALAYKLP 301
YLP+GW CLVCGAS Q LPPNFI LPKDAYTPD +AASDCMLGKIGYGTVSEALAYKL
Sbjct: 241 YLPAGWLCLVCGASAKQELPPNFIALPKDAYTPDVIAASDCMLGKIGYGTVSEALAYKLR 300
Query: 302 FVFVRRDYFNEEPFLRNMLEFYQGGVEMIRRDLLTGHWKPYLERAISLKPCYEGGINGGE 361
F+FVRRDYFNEEPFLR MLE+YQGGVEMIRRDLL G W PYLERA++LKPCY+GGI+GGE
Sbjct: 301 FIFVRRDYFNEEPFLRKMLEYYQGGVEMIRRDLLAGCWAPYLERAVTLKPCYDGGIDGGE 360
Query: 362 VAAHILQETAIGKNYASDKLSGARRLRDAIIFGYELQRVPGRDVSIPEWYQTAEDELGLS 421
VAA ILQ+TA+GK + LSGARRLRDAII G++LQR PGRD+S+PEWYQ A +E G+
Sbjct: 361 VAAKILQDTAMGKKRSKLNLSGARRLRDAIILGFQLQRAPGRDLSVPEWYQVAGNEAGI- 419
Query: 422 ASRSPPCTPEGDSTVKLS--TEDFEILHGDCQGLPDTMSFLKSLVELDIIKDSDRTPEKR 479
P D T K S E FEILHGD GL DT+ FL SL L I
Sbjct: 420 --------PSVDQTQKPSKFVEGFEILHGDHHGLSDTIGFLDSLATLAKIGGH------H 465
Query: 480 QMRERKAAAGLFNWEEEIFVARAPGRLDVMGGIADYSGSLVLQMPIREACHVALQKISPS 539
Q RE AAA LFNWEE+I VARAPGRLDVMGGIADYSGSLVL MP REACH A+Q+ PS
Sbjct: 466 QEREHLAAAALFNWEEDIVVARAPGRLDVMGGIADYSGSLVLLMPTREACHAAVQRNHPS 525
Query: 540 KQRLWKHALARHNDKGQGPMPVLQIVSYGSELSNRGPTFDMDLSDFMDE-GKPMSYEKAK 598
KQ+LWKHA ARH+ + P+L+IVS+GSELSNRGPTFDMDLSDFM+E GKP+SY+KA
Sbjct: 526 KQKLWKHAEARHHSRDT---PILEIVSFGSELSNRGPTFDMDLSDFMEEDGKPISYDKAY 582
Query: 599 KYFDTNPSQKWAAYVAGTILVLMTELGVRFEDSISMLVSSAVPEGKGXXXXXXXXXXXXX 658
YF +PSQKWAAYVAGTILVLM E+ VRFEDSIS+LVSS VPEGKG
Sbjct: 583 HYFSRDPSQKWAAYVAGTILVLMREMDVRFEDSISILVSSTVPEGKGVSSSASVEVATMS 642
Query: 659 XXXXXHGLNIHPRDLALLCQKVENHIVGAPCGVMDQMASACGEANKLLAMVCQPAELLGV 718
HGL I PRD+ALLCQKVEN++VGAPCGVMDQMASACGEANKLLAM+CQPAE+LG+
Sbjct: 643 AVAAAHGLEISPRDVALLCQKVENYVVGAPCGVMDQMASACGEANKLLAMICQPAEILGL 702
Query: 719 VEIPSHIRFWGIDSGIRHSVGGADYGSVRAGAFMGRKMIKSTAS 762
VEIPSHIRFWGIDSGIRHSVGG+DYGSVR GAF+G+ MI+S A+
Sbjct: 703 VEIPSHIRFWGIDSGIRHSVGGSDYGSVRIGAFIGKTMIRSFAA 746
|
|
| UNIPROTKB|Q9KRP1 galK "Galactokinase" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)] | Back alignment and assigned GO terms |
|---|
Score = 165 (63.1 bits), Expect = 1.8e-10, Sum P(2) = 1.8e-10
Identities = 41/143 (28%), Positives = 68/143 (47%)
Query: 605 PSQKWAAYVAGTILVLMTELGVRFEDSISMLVSSAVPEGKGXXXXXXXXXXXXXXXXXXH 664
P + W+ Y+ G I L+ E G F + ++VS VP+G G +
Sbjct: 89 PKKMWSNYIRGVIKCLI-ERGFEFNGA-DIVVSGNVPQGAGLSSSAALEVVIGQTFKELY 146
Query: 665 GLNIHPRDLALLCQKVENHIVGAPCGVMDQMASACGEANKLLAMVCQPAELLGVVEIPSH 724
L I ++AL Q+ EN VG CG+MDQM SA G+AN + + C+ + V +P
Sbjct: 147 QLKISQAEIALNGQQAENQFVGCNCGIMDQMISAQGQANHAMLLDCRSLQTEAVA-MPEQ 205
Query: 725 IRFWGIDSGIRHSVGGADYGSVR 747
+ ++S + + ++Y + R
Sbjct: 206 MAVVILNSNKKRGLVESEYNTRR 228
|
|
| TIGR_CMR|VC_1595 VC_1595 "galactokinase" [Vibrio cholerae O1 biovar El Tor (taxid:686)] | Back alignment and assigned GO terms |
|---|
Score = 165 (63.1 bits), Expect = 1.8e-10, Sum P(2) = 1.8e-10
Identities = 41/143 (28%), Positives = 68/143 (47%)
Query: 605 PSQKWAAYVAGTILVLMTELGVRFEDSISMLVSSAVPEGKGXXXXXXXXXXXXXXXXXXH 664
P + W+ Y+ G I L+ E G F + ++VS VP+G G +
Sbjct: 89 PKKMWSNYIRGVIKCLI-ERGFEFNGA-DIVVSGNVPQGAGLSSSAALEVVIGQTFKELY 146
Query: 665 GLNIHPRDLALLCQKVENHIVGAPCGVMDQMASACGEANKLLAMVCQPAELLGVVEIPSH 724
L I ++AL Q+ EN VG CG+MDQM SA G+AN + + C+ + V +P
Sbjct: 147 QLKISQAEIALNGQQAENQFVGCNCGIMDQMISAQGQANHAMLLDCRSLQTEAVA-MPEQ 205
Query: 725 IRFWGIDSGIRHSVGGADYGSVR 747
+ ++S + + ++Y + R
Sbjct: 206 MAVVILNSNKKRGLVESEYNTRR 228
|
|
| MGI|MGI:95730 Galk1 "galactokinase 1" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 138 (53.6 bits), Expect = 4.5e-08, Sum P(2) = 4.5e-08
Identities = 52/201 (25%), Positives = 80/201 (39%)
Query: 548 LARHNDKGQG---PMPV-LQIVSYGSELSNRGPTFDMDLSDFMDEGKPMSYEKAKKYFDT 603
+ H D QG PM + L V GS ++ G + S DE + + + +
Sbjct: 40 IGEHTDYNQGLVLPMALELVTVMVGSPRTD-GLVSLLTTSKDADEPQRLQFPLPSAQWSL 98
Query: 604 NPS-QKWAAYVAGTILVLMTELGVRFEDSISMLVSSAVPEGKGXXXXXXXXXXXXXXXXX 662
P +WA YV G I V F S +V S+VP G G
Sbjct: 99 EPGIPQWANYVKGVIQHYPASPLVGF----SAVVVSSVPLGGGLSSSASLEVATYTFIQQ 154
Query: 663 XHGLNIHPRDLALLCQKVENHIVGAPCGVMDQMASACGEANKLLAMVCQPAELLGVVEIP 722
+ A +CQ+ E+ G PCG+MDQ+ + G+ L + C+ E V
Sbjct: 155 LCPDSGAIAARAQVCQRAEHSFAGVPCGIMDQLIALLGQKGYALLIDCRSLETSLVPLSD 214
Query: 723 SHIRFWGIDSGIRHSVGGADY 743
+ +S +RHS+G ++Y
Sbjct: 215 PKLAVLITNSNVRHSLGSSEY 235
|
|
| UNIPROTKB|P0A6T3 galK [Escherichia coli K-12 (taxid:83333)] | Back alignment and assigned GO terms |
|---|
Score = 152 (58.6 bits), Expect = 5.1e-08, Sum P(2) = 5.1e-08
Identities = 42/156 (26%), Positives = 70/156 (44%)
Query: 608 KWAAYVAGTILVLMTELGVRFEDSISMLVSSAVPEGKGXXXXXXXXXXXXXXXXXXHGLN 667
+WA YV G + L +L + M++S VP+G G + L
Sbjct: 91 QWANYVRGVVKHL--QLRNNSFGGVDMVISGNVPQGAGLSSSASLEVAVGTVLQQLYHLP 148
Query: 668 IHPRDLALLCQKVENHIVGAPCGVMDQMASACGEANKLLAMVCQPAELLGV--VEIPSHI 725
+ +AL Q+ EN VG CG+MDQ+ SA G+ + L + C+ LG V +P +
Sbjct: 149 LDGAQIALNGQEAENQFVGCNCGIMDQLISALGKKDHALLIDCRS---LGTKAVSMPKGV 205
Query: 726 RFWGIDSGIRHSVGGADYGSVRAGAFMGRKMIKSTA 761
I+S + ++ G++Y + R G + + A
Sbjct: 206 AVVIINSNFKRTLVGSEYNTRREQCETGARFFQQPA 241
|
|
| UNIPROTKB|Q9GKK4 GALK1 "Galactokinase" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 134 (52.2 bits), Expect = 9.9e-08, Sum P(2) = 9.9e-08
Identities = 50/201 (24%), Positives = 79/201 (39%)
Query: 548 LARHNDKGQG---PMPV-LQIVSYGSELSNRGPTFDMDLSDFMDEGKPMSYEKAKKYFDT 603
+ H D QG PM + L V GS ++ G + S+ DE + + +
Sbjct: 41 IGEHTDYNQGLVLPMALELVTVLVGSPRAD-GLVSLLTTSEDADEPRRLQFPLPTAQRSL 99
Query: 604 NP-SQKWAAYVAGTILVLMTELGVRFEDSISMLVSSAVPEGKGXXXXXXXXXXXXXXXXX 662
P + +WA YV G I S +V S+VP G G
Sbjct: 100 EPGTPRWANYVKGVI----QHYPAAPLPGFSAVVVSSVPLGGGLSSSASLEVATYTFLQQ 155
Query: 663 XHGLNIHPRDLALLCQKVENHIVGAPCGVMDQMASACGEANKLLAMVCQPAELLGVVEIP 722
+ A +CQ+ E+ G PCG+MDQ+ + G+ L + C+ E V
Sbjct: 156 LCPDSGSVAARAQVCQQAEHSFAGVPCGIMDQLIALLGQEGHALLIDCRSLETSLVPLSE 215
Query: 723 SHIRFWGIDSGIRHSVGGADY 743
+ +S +RHS+G ++Y
Sbjct: 216 PKLAVLITNSNVRHSLGSSEY 236
|
|
| UNIPROTKB|F1RVY7 GALK1 "Uncharacterized protein" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
Score = 129 (50.5 bits), Expect = 1.4e-07, Sum P(2) = 1.4e-07
Identities = 52/203 (25%), Positives = 79/203 (38%)
Query: 548 LARHNDKGQG---PMPV-LQIVSYGSELSNRGPTFDMDLSDFMDEGKPMSYEKAKKYFDT 603
+ H D QG PM + L V GS ++ G + S+ DE + + +
Sbjct: 69 IGEHTDYNQGLVLPMALELVTVLVGSPRTD-GLVSLLTTSEDADEPRRLQFPLPTDKRPL 127
Query: 604 NP-SQKWAAYVAGTILVLMTELGVRFEDSISMLVSSAVPEGKGXXXXXXXXXXXXXXXXX 662
P + WA YV G I S +V S+VP G G
Sbjct: 128 EPGTPHWANYVKGVI----QHYPAAPLPGFSAVVVSSVPLGGGLSSSASLEVATYTFLQQ 183
Query: 663 X--HGLNIHPRDLALLCQKVENHIVGAPCGVMDQMASACGEANKLLAMVCQPAELLGVVE 720
I R A +CQ+ E+ G PCG+MDQ+ + G+ L + C+ E V
Sbjct: 184 LCPDSGTIAAR--AQVCQRAEHSFAGVPCGIMDQLIALLGQKGHALLIDCRSLETSLVPL 241
Query: 721 IPSHIRFWGIDSGIRHSVGGADY 743
+ +S +RHS+G ++Y
Sbjct: 242 SDPKLAVLITNSNVRHSLGSSEY 264
|
|
| RGD|1305375 Galk1 "galactokinase 1" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 131 (51.2 bits), Expect = 1.7e-07, Sum P(2) = 1.7e-07
Identities = 52/203 (25%), Positives = 80/203 (39%)
Query: 548 LARHNDKGQG---PMPV-LQIVSYGSELSNRGPTFDMDLSDFMDEGKPMSYEKAKKYFDT 603
+ H D QG PM + L V GS ++ G + S DE + + + +
Sbjct: 41 IGEHTDYNQGLVLPMALELVTVMVGSPRTD-GLVSLLTTSKDADEPQRLQFPLPSAQWSL 99
Query: 604 NPS-QKWAAYVAGTILVLMTELGVRFEDSISMLVSSAVPEGKGXXXXXXXXXXXXXXXXX 662
P +WA YV G I F S +V S+VP G G
Sbjct: 100 EPGIPQWANYVKGVIQYYPASPLCGF----SAVVVSSVPLGGGLSSSASLEVATYAFLQQ 155
Query: 663 X--HGLNIHPRDLALLCQKVENHIVGAPCGVMDQMASACGEANKLLAMVCQPAELLGVVE 720
+I R A +CQ+ E+ G PCG+MDQ+ + G+ L + C+ E V
Sbjct: 156 LCPDSGSIAAR--AQVCQRAEHSFAGVPCGIMDQLIALLGQKGYALLIDCRSLETSLVPL 213
Query: 721 IPSHIRFWGIDSGIRHSVGGADY 743
+ +S +RHS+ ++Y
Sbjct: 214 SDPKLTVLITNSNVRHSLASSEY 236
|
|
| UNIPROTKB|P51570 GALK1 "Galactokinase" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 128 (50.1 bits), Expect = 2.8e-07, Sum P(2) = 2.8e-07
Identities = 53/203 (26%), Positives = 78/203 (38%)
Query: 548 LARHNDKGQG---PMPV-LQIVSYGSELSNRGPTFDMDLSDFMDEGKPMSYEKAKKYFDT 603
+ H D QG PM + L V GS + G + S+ DE + + +
Sbjct: 41 IGEHTDYNQGLVLPMALELMTVLVGSPRKD-GLVSLLTTSEGADEPQRLQFPLPTAQRSL 99
Query: 604 NP-SQKWAAYVAGTILVLMTELGVRFEDSISMLVSSAVPEGKGXXXXXXXXXXXXXXXXX 662
P + +WA YV G I F S +V S+VP G G
Sbjct: 100 EPGTPRWANYVKGVIQYYPAAPLPGF----SAVVVSSVPLGGGLSSSASLEVATYTFLQQ 155
Query: 663 X--HGLNIHPRDLALLCQKVENHIVGAPCGVMDQMASACGEANKLLAMVCQPAELLGVVE 720
I R A +CQ+ E+ G PCG+MDQ S G+ L + C+ E V
Sbjct: 156 LCPDSGTIAAR--AQVCQQAEHSFAGMPCGIMDQFISLMGQKGHALLIDCRSLETSLVPL 213
Query: 721 IPSHIRFWGIDSGIRHSVGGADY 743
+ +S +RHS+ ++Y
Sbjct: 214 SDPKLAVLITNSNVRHSLASSEY 236
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| O23461 | ARAK_ARATH | 2, ., 7, ., 1, ., 4, 6 | 0.8103 | 0.9856 | 0.7949 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 2.7.1 | LOW CONFIDENCE prediction! |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 838 | |||
| PRK03817 | 351 | PRK03817, PRK03817, galactokinase; Provisional | 1e-25 | |
| COG0153 | 390 | COG0153, GalK, Galactokinase [Carbohydrate transpo | 9e-25 | |
| PRK05101 | 382 | PRK05101, PRK05101, galactokinase; Provisional | 2e-24 | |
| PRK00555 | 363 | PRK00555, PRK00555, galactokinase; Provisional | 2e-19 | |
| TIGR00131 | 386 | TIGR00131, gal_kin, galactokinase | 1e-17 | |
| PRK05322 | 387 | PRK05322, PRK05322, galactokinase; Provisional | 7e-16 | |
| pfam00288 | 67 | pfam00288, GHMP_kinases_N, GHMP kinases N terminal | 8e-12 | |
| PTZ00290 | 468 | PTZ00290, PTZ00290, galactokinase; Provisional | 3e-11 | |
| PLN02521 | 497 | PLN02521, PLN02521, galactokinase | 4e-10 | |
| pfam13528 | 317 | pfam13528, Glyco_trans_1_3, Glycosyl transferase f | 2e-08 | |
| PLN02865 | 423 | PLN02865, PLN02865, galactokinase | 2e-07 | |
| TIGR00549 | 274 | TIGR00549, mevalon_kin, mevalonate kinase | 1e-05 | |
| COG2605 | 333 | COG2605, COG2605, Predicted kinase related to gala | 2e-05 | |
| COG1577 | 307 | COG1577, ERG12, Mevalonate kinase [Lipid metabolis | 2e-05 | |
| COG4542 | 293 | COG4542, PduX, Protein involved in propanediol uti | 2e-04 | |
| PRK03926 | 302 | PRK03926, PRK03926, mevalonate kinase; Provisional | 3e-04 | |
| cd03801 | 374 | cd03801, GT1_YqgM_like, This family is most closel | 0.002 | |
| pfam10509 | 52 | pfam10509, GalKase_gal_bdg, Galactokinase galactos | 0.003 |
| >gnl|CDD|235163 PRK03817, PRK03817, galactokinase; Provisional | Back alignment and domain information |
|---|
Score = 108 bits (273), Expect = 1e-25
Identities = 69/243 (28%), Positives = 105/243 (43%), Gaps = 49/243 (20%)
Query: 501 RAPGRLDVMGGIADYSGSLVLQMPIREACHVALQKISPSKQRLWKHALARHNDKGQGPMP 560
++PGR++++G DY+ VL I + L+ I S++
Sbjct: 4 KSPGRVNLIGEHTDYNDGYVLPFAINL--YTFLE-IEKSEK------------------- 41
Query: 561 VLQIVSYGSELSNRGPTFDMDLSDFMDEGKPMSYEKAKKYFDTNPSQKWAAYVAGTILVL 620
+ SE N TF++D EK WA Y+ G I VL
Sbjct: 42 ----FIFYSENFNEEKTFELD-----------KLEK---------LNSWADYIKGVIWVL 77
Query: 621 MTELGVRFEDSISMLVSSAVPEGKGVSSSASVEVASMSAIAAAHGLNIHPRDLALLCQKV 680
G + VSS +P G G+SSSAS+EVA A+ A+ LN+ +LALL ++
Sbjct: 78 EKR-GYEVG-GVKGKVSSNLPIGAGLSSSASLEVAVAYALNEAYNLNLSKLELALLAREA 135
Query: 681 ENHIVGAPCGVMDQMASACGEANKLLAMVCQPAELLGVVEIPSHIRFWGIDSGIRHSVGG 740
EN VG PCG+MDQ A A G+ + + + E V P D+G++ +
Sbjct: 136 ENEFVGVPCGIMDQFAVAFGKKDHAIFLDTMTLE-YEYVPFPEDYEILVFDTGVKRELAS 194
Query: 741 ADY 743
++Y
Sbjct: 195 SEY 197
|
Length = 351 |
| >gnl|CDD|223231 COG0153, GalK, Galactokinase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 107 bits (268), Expect = 9e-25
Identities = 70/260 (26%), Positives = 108/260 (41%), Gaps = 44/260 (16%)
Query: 479 RQMRERKAA--AGLFNWEEEIFVARAPGRLDVMGGIADYSGSLVLQMPIREACHVALQKI 536
++E+ A A F + E A APGR++++G DY+G VL I +VA+ K
Sbjct: 3 SSLKEKLQALFAEHFGYVEPTVTAFAPGRVNLIGEHTDYNGGFVLPCAINYGTYVAVAKR 62
Query: 537 SPSKQRLWKHALARHNDKGQGPMPVLQIVSYGSELSNRGPTFDMDLSDFMDEGKPMSYEK 596
K RL Y + N G F + +
Sbjct: 63 DDGKVRL-----------------------YSANFGNAGDIFFLL-----LDIAKE---- 90
Query: 597 AKKYFDTNPSQKWAAYVAGTILVLMTELGVRFEDSISMLVSSAVPEGKGVSSSASVEVAS 656
WA YV G I L + G F + +++S +P G G+SSSA++EVA
Sbjct: 91 --------KIDDWANYVKGVIKALQ-KRGYAF-TGLDIVISGNIPIGAGLSSSAALEVAV 140
Query: 657 MSAIAAAHGLNIHPRDLALLCQKVENHIVGAPCGVMDQMASACGEANKLLAMVCQPAELL 716
A+ L + +LA + Q EN VG CG+MDQ+ASA G+ + L + C+ E
Sbjct: 141 ALALQRLFNLPLDKAELAKIAQVAENQFVGVNCGIMDQLASAFGKKDHALLLDCRTLEYE 200
Query: 717 GVVEIPSHIRFWGIDSGIRH 736
V + ++S ++
Sbjct: 201 PVPFPVGGVSIVIVNSNVKR 220
|
Length = 390 |
| >gnl|CDD|179937 PRK05101, PRK05101, galactokinase; Provisional | Back alignment and domain information |
|---|
Score = 105 bits (265), Expect = 2e-24
Identities = 70/270 (25%), Positives = 120/270 (44%), Gaps = 49/270 (18%)
Query: 491 FNWEEEIFVARAPGRLDVMGGIADYSGSLVLQMPIREACHVALQKISPSKQRLWKHALAR 550
F + + +APGR++++G DY+ V +P C + Q + + A+
Sbjct: 15 FGYPPTHTI-QAPGRVNLIGEHTDYNDGFV--LP----CAIDYQTVI---------SCAK 58
Query: 551 HNDKGQGPMPVLQIVSYGSELSNRGPTFDMDLSDFMDEGKPMSYEKAKKYFDTNPSQKWA 610
+D+ + ++ N+ F +D P+ +P Q+WA
Sbjct: 59 RDDR--------IVRVIAADYDNQQDEFSLD--------APIVP---------HPEQQWA 93
Query: 611 AYVAGTILVLMTELGVRFEDSISMLVSSAVPEGKGVSSSASVEVASMSAIAAAHGLNIHP 670
YV G + L E F +++S VP+G G+SSSAS+EVA + L +
Sbjct: 94 NYVRGVVKHLQ-ERNPDFG-GADLVISGNVPQGAGLSSSASLEVAVGQTFQQLYHLPLSG 151
Query: 671 RDLALLCQKVENHIVGAPCGVMDQMASACGEANKLLAMVCQPAELLGVVEIPSHIRFWGI 730
++AL Q+ EN VG CG+MDQ+ SA G+ + L + C+ E V +P + I
Sbjct: 152 AEIALNGQEAENQFVGCNCGIMDQLISALGKKDHALLIDCRSLETKAVP-MPEGVAVVII 210
Query: 731 DSGIRHSVGGADYGSVR-----AGAFMGRK 755
+S ++ + ++Y + R A F G K
Sbjct: 211 NSNVKRGLVDSEYNTRRQQCETAARFFGVK 240
|
Length = 382 |
| >gnl|CDD|179063 PRK00555, PRK00555, galactokinase; Provisional | Back alignment and domain information |
|---|
Score = 90.7 bits (225), Expect = 2e-19
Identities = 54/154 (35%), Positives = 77/154 (50%), Gaps = 12/154 (7%)
Query: 602 DTNPSQ--KWAAYVAGTILVLMTELGVRFEDSISMLVSSAVPEGKGVSSSASVEVASMSA 659
DT P Q WAAY AG I L G +M ++S V G G+SSSA++E A + A
Sbjct: 62 DTTPGQVTGWAAYAAGVIWALRGA-GHPVPGG-AMSITSDVEIGSGLSSSAALECAVLGA 119
Query: 660 IAAAHGLNIHPRDLALLCQKVENHIVGAPCGVMDQMASACGEANKLLAMVCQPAELLGVV 719
+ AA G I + A L Q+ EN VGAP G++DQ+A+ G A++ + L V
Sbjct: 120 VGAATGTRIDRLEQARLAQRAENEYVGAPTGLLDQLAALFGAPKT--ALLIDFRD-LTVR 176
Query: 720 EIP-----SHIRFWGIDSGIRHSVGGADYGSVRA 748
+ + + +DS RH G +Y + RA
Sbjct: 177 PVAFDPDAAGVVLLLMDSRARHRHAGGEYAARRA 210
|
Length = 363 |
| >gnl|CDD|232841 TIGR00131, gal_kin, galactokinase | Back alignment and domain information |
|---|
Score = 85.3 bits (211), Expect = 1e-17
Identities = 58/232 (25%), Positives = 88/232 (37%), Gaps = 46/232 (19%)
Query: 484 RKAAAGLFNW---EEEIFVARAPGRLDVMGGIADYSGSLVLQMPIREACHVALQKISPSK 540
++ +F + F ARAPGR++++G DY+ VL C + +
Sbjct: 1 CESIQKIFASAFGAKPDFTARAPGRVNLIGEHTDYNDGSVL------PCAIDFGTLCAVA 54
Query: 541 QRLWKHALARHNDKGQGPMPVLQIVS-YGSELSNRGPTFDMDLSDFMDEGKPMSYEKAKK 599
R +DK V Y + N+ +DL
Sbjct: 55 VR---------DDK---------NVRIYLANADNKFAERSLDL------------PLDGS 84
Query: 600 YFDTNPSQKWAAYVAGTILVLMTELGVRFEDSISMLVSSAVPEGKGVSSSASVEVASMSA 659
WA Y G + V E F ++ S VP G G+SSSA+ E A +
Sbjct: 85 EVS-----DWANYFKGVLHVAQ-ERFNSFPLGADIVCSGNVPTGSGLSSSAAFECAVGAV 138
Query: 660 IAAAHGLNIHPRDLALLCQKVENHIVGAPCGVMDQMASACGEANKLLAMVCQ 711
+ L + + + L Q ENH VG CG+MDQ AS G+ + L + C+
Sbjct: 139 LQNMGHLPLDSKQILLRIQVAENHFVGVNCGIMDQAASVLGKEDHALLVECR 190
|
Galactokinase is a member of the GHMP kinases (Galactokinase, Homoserine kinase, Mevalonate kinase, Phosphomevalonate kinase) and shares with them an amino-terminal domain probably related to ATP binding.The galactokinases found by This model are divided into two sets. Prokaryotic forms are generally shorter. The eukaryotic forms are longer because of additional central regions and in some cases are known to be bifunctional, with regulatory activities that are independent of galactokinase activity [Energy metabolism, Sugars]. Length = 386 |
| >gnl|CDD|235407 PRK05322, PRK05322, galactokinase; Provisional | Back alignment and domain information |
|---|
Score = 80.3 bits (199), Expect = 7e-16
Identities = 53/216 (24%), Positives = 87/216 (40%), Gaps = 53/216 (24%)
Query: 494 EEEIFVARAPGRLDVMGGIADYSGSLVLQMPIREACHVALQKISPSKQRLWKHALARHND 553
E++F + PGR++++G DY+G V P+ L + AR D
Sbjct: 18 AEDVFFS--PGRINLIGEHTDYNGGHVF----------------PAAITLGTYGAARKRD 59
Query: 554 KGQ-----GPMPVLQIVSYGSELSNRGPTFDMDLSDFMDEGKPMSYEKAKKYFDTNPSQK 608
+ L I+ + DL D +S++K
Sbjct: 60 DKKVRLYSANFEDLGIIEF-------------DLDD-------LSFDKEDD--------- 90
Query: 609 WAAYVAGTILVLMTELGVRFEDSISMLVSSAVPEGKGVSSSASVEVASMSAIAAAHGLNI 668
WA Y G + L E G + + +L+ +P G G+SSSAS+E+ + + L++
Sbjct: 91 WANYPKGVLKFLQ-EAGYKIDHGFDILIYGNIPNGAGLSSSASIELLTGVILKDLFNLDL 149
Query: 669 HPRDLALLCQKVENHIVGAPCGVMDQMASACGEANK 704
+L L QK EN +G G+MDQ A G+ +
Sbjct: 150 DRLELVKLGQKTENEFIGVNSGIMDQFAIGMGKKDH 185
|
Length = 387 |
| >gnl|CDD|215839 pfam00288, GHMP_kinases_N, GHMP kinases N terminal domain | Back alignment and domain information |
|---|
Score = 60.6 bits (148), Expect = 8e-12
Identities = 23/69 (33%), Positives = 34/69 (49%), Gaps = 2/69 (2%)
Query: 633 SMLVSSAVPEGKGVSSSASVEVASMSAIAAAHGLNIHPRDLALLCQKVENHIVGAPCGVM 692
+ + S +P G G+ SSA++ VA + A+ GL + +LA L + E I G G
Sbjct: 1 DIEIESNIPLGAGLGSSAALAVALLLALNELFGLPLSKEELARLALEAEGAI-GVNSG-D 58
Query: 693 DQMASACGE 701
D AS G
Sbjct: 59 DVAASVYGG 67
|
This family includes homoserine kinases, galactokinases and mevalonate kinases. Length = 67 |
| >gnl|CDD|240347 PTZ00290, PTZ00290, galactokinase; Provisional | Back alignment and domain information |
|---|
Score = 66.4 bits (162), Expect = 3e-11
Identities = 68/295 (23%), Positives = 110/295 (37%), Gaps = 75/295 (25%)
Query: 495 EEIFVARAPGRLDVMGGIADYSGSLVLQMPIREACHVALQKISPSKQRLWKHAL--ARHN 552
E + APGR++ +G DY G V + E CH+ + ++ + H L A
Sbjct: 35 EWLLFTFAPGRVNFIGEHVDYMGGYVCPAAVLEGCHILVGRV----KHFCDHKLRFATET 90
Query: 553 DKGQGPMPVLQIVSYGSELSNRGPTFDMDLSDFMDEGKPMSYEKAKKYFDTNPSQKWAAY 612
D+ F +D + K + KA W +
Sbjct: 91 DE----------------------HFVLD---HLGGAK---HNKA-----------WTTF 111
Query: 613 VAGTILVLMTELGVRFEDS----ISMLVSSAVPEGKGVSSSASVEVASMSAIAAAHGLN- 667
V G + + LGV + + M+V +P G G+S+SAS VA ++AI
Sbjct: 112 VRGAATLRLNRLGVAIDAPSLQGVCMVVHGTLPMGAGMSASASFGVALLNAINTVVTRRY 171
Query: 668 ------------IHPR-------DLALLCQKVENHIVGAPCGVMDQMASACGEANKLLAM 708
I P +LA +++E G G+MDQ SA E +K + +
Sbjct: 172 KGCPTSPGRRYSILPPMSKEELIELAKQARRIETEFCGVNVGIMDQFISAFAEEDKFMFL 231
Query: 709 VCQPA--ELLGVVEIPSHIRFWG-IDSGIRHSVGGAD---YGSVRAGAFMGRKMI 757
C+ E + + + IDS I+H + G Y +VR+ +K I
Sbjct: 232 DCKSLTFESHDMTPLLGDGACFLLIDSMIKHDLLGGTAGMYNTVRSDQEGAQKKI 286
|
Length = 468 |
| >gnl|CDD|215285 PLN02521, PLN02521, galactokinase | Back alignment and domain information |
|---|
Score = 62.4 bits (152), Expect = 4e-10
Identities = 56/217 (25%), Positives = 84/217 (38%), Gaps = 58/217 (26%)
Query: 498 FVARAPGRLDVMGGIADYSGSLVLQMPIREACHVALQKISPSKQRLWKHALARHNDKGQG 557
AR+PGR++++G DY G VL M IR+ VA+++ SK+
Sbjct: 49 LFARSPGRVNLIGEHIDYEGYSVLPMAIRQDTIVAIRRAEGSKK---------------- 92
Query: 558 PMPVLQIVSYGSELSNRGPTFDMDLSDFMDEGKPMSYEKAKKYFDTNPSQ-------KWA 610
L+I +N + F +P Q KW
Sbjct: 93 ----LRI-------ANVNDKYTT------------------CTFPADPDQEVDLANHKWG 123
Query: 611 AYVAGTILVLMTELGVRFEDS-----ISMLVSSAVPEGKGVSSSASVEVASMSAIAAAHG 665
Y + L + D + ++V VP G G+SSSA++ ++ AI AA G
Sbjct: 124 NYFICGYKGVFEFLKSKGVDVGPPVGLDVVVDGTVPTGSGLSSSAALVCSAAIAIMAALG 183
Query: 666 LNIHPRDLALLCQKVENHIVGAPCGVMDQMASACGEA 702
LN +++A K E HI G G MDQ S +
Sbjct: 184 LNFTKKEVAQFTCKCERHI-GTQSGGMDQAISIMAQQ 219
|
Length = 497 |
| >gnl|CDD|222200 pfam13528, Glyco_trans_1_3, Glycosyl transferase family 1 | Back alignment and domain information |
|---|
Score = 56.5 bits (137), Expect = 2e-08
Identities = 41/191 (21%), Positives = 76/191 (39%), Gaps = 19/191 (9%)
Query: 20 YYVTGHGFGHATRVVEVVRNLISAGHDVHVVTG--APDFVFTSEIQSPRLFIRKVLLDCG 77
Y V G G GH +R + L GH+V V+ A + + SP R++ G
Sbjct: 5 YGVQGTGNGHISRARVLAEAL--RGHEVDVLFSGRAEELL------SPEFPYRRLP---G 53
Query: 78 -AVQADALTVDRLASLEKYSETAVAPRKSILKDEVEWLNSIKADLVVSDVVPVACRAAAD 136
+ VD ++ K + + +++D V+ L+ + DLV++D P++ AA
Sbjct: 54 LTFVTENGRVDYGKTILKNLQG-LIRLPRLVRDLVKLLDLFRPDLVITDFEPISAWAAKR 112
Query: 137 AGIRSVCVTNFSWDFIYAEY-VMAAGHHHRSIVWQIAEDYSHCEFLIRLP-GYCPMPAFR 194
G+ V + + F+ Y + + ++ + + L P F
Sbjct: 113 QGVPCVGIDHQY-AFLACNYDIPKGLKFDALFEKYVLRAFAPAQRRLGLHFYPPLKPHFE 171
Query: 195 DVIDVPLVVRR 205
I VP ++R
Sbjct: 172 QPI-VPPILRP 181
|
Length = 317 |
| >gnl|CDD|215466 PLN02865, PLN02865, galactokinase | Back alignment and domain information |
|---|
Score = 53.7 bits (129), Expect = 2e-07
Identities = 60/241 (24%), Positives = 95/241 (39%), Gaps = 40/241 (16%)
Query: 477 EKRQMRERKAAAGLFNWEEEIFVARAPGRLDVMGGIADYSGSLVLQMPIREACHVALQKI 536
E ++RER AA N E+ V +P R+ +G D+ G V M I
Sbjct: 11 ELDEIRERVAAMSGRN-SGEVRVVVSPYRICPLGAHIDHQGGTVSAMTI----------- 58
Query: 537 SPSKQRLWKHALARHNDKGQGPMPVLQ--IVSYGSELSNRGPTFDMDLSDFMDEGKPMSY 594
+KG +L + S E+ R F+ ++ +DE + +
Sbjct: 59 ----------------NKG-----ILLGFVPSGDPEVLLRSAQFEGEVRFRVDE---IQH 94
Query: 595 EKAKKYFDTNPSQKWAAYVAGTILVLMTELGVRFEDSISMLVS-SAVPEGKGVSSSASVE 653
A D+ W Y G + L G I+ +S S + G+SSSA+V
Sbjct: 95 PIANVSSDSKEESNWGDYARGAVYALQ-SRGHALSQGITGYISGSEGLDSSGLSSSAAVG 153
Query: 654 VASMSAIAAAHGLNIHPRDLALLCQKVENHIVGAPCGVMDQMASACGEANKLLAMVCQPA 713
VA + A+ A+ L + P D L + +EN +G G++DQ A L M C+
Sbjct: 154 VAYLLALENANNLTVSPEDNIELDRLIENEYLGLRNGILDQSAILLSRYGCLTFMDCKTL 213
Query: 714 E 714
+
Sbjct: 214 D 214
|
Length = 423 |
| >gnl|CDD|233017 TIGR00549, mevalon_kin, mevalonate kinase | Back alignment and domain information |
|---|
Score = 47.3 bits (113), Expect = 1e-05
Identities = 23/84 (27%), Positives = 39/84 (46%), Gaps = 1/84 (1%)
Query: 617 ILVLMTELGVRFEDSISMLVSSAVPEGKGVSSSASVEVASMSAIAAAHGLNIHPRDLALL 676
+ ++ + + + S +P G+G+ SSA+V VA + A+A G + +LA L
Sbjct: 65 VAEALSYFSELNPPPLEITIDSEIPPGRGLGSSAAVAVALIRALADYFGSELSKEELAEL 124
Query: 677 CQKVENHIVGAPCGVMDQMASACG 700
+ E G P G +D S G
Sbjct: 125 ANEAEKIAHGKPSG-IDTATSTSG 147
|
This model represents mevalonate kinase, the third step in the mevalonate pathway of isopentanyl pyrophosphate (IPP) biosynthesis. IPP is a common intermediate for a number of pathways including cholesterol biosynthesis. This model covers enzymes from eukaryotes, archaea and bacteria. The related enzyme from the same pathway, phosphmevalonate kinase, serves as an outgroup for this clade. Paracoccus exhibits two genes within the phosphomevalonate/mevalonate kinase family, one of which falls between trusted and noise cutoffs of this model. The degree of divergence is high, but if the trees created from this model are correct, the proper names of these genes have been swapped [Central intermediary metabolism, Other]. Length = 274 |
| >gnl|CDD|225325 COG2605, COG2605, Predicted kinase related to galactokinase and mevalonate kinase [General function prediction only] | Back alignment and domain information |
|---|
Score = 47.4 bits (113), Expect = 2e-05
Identities = 22/69 (31%), Positives = 36/69 (52%)
Query: 632 ISMLVSSAVPEGKGVSSSASVEVASMSAIAAAHGLNIHPRDLALLCQKVENHIVGAPCGV 691
I + S P G G+ SS++ VA ++A+ A G ++ P +LA ++E + G
Sbjct: 90 IELHTQSDAPPGSGLGSSSAFVVALLNALHAWKGESLGPYELAREAYEIEREDLKIVGGK 149
Query: 692 MDQMASACG 700
DQ A+A G
Sbjct: 150 QDQYAAAFG 158
|
Length = 333 |
| >gnl|CDD|224493 COG1577, ERG12, Mevalonate kinase [Lipid metabolism] | Back alignment and domain information |
|---|
Score = 47.3 bits (113), Expect = 2e-05
Identities = 25/81 (30%), Positives = 41/81 (50%)
Query: 611 AYVAGTILVLMTELGVRFEDSISMLVSSAVPEGKGVSSSASVEVASMSAIAAAHGLNIHP 670
Y+ + + L S+ + S +P G G+ SSA+V VA + A++A G+ + P
Sbjct: 63 GYIQAAVRLASELLNQSSLKPFSLEIDSEIPIGAGLGSSAAVSVAVIKALSAYFGVELSP 122
Query: 671 RDLALLCQKVENHIVGAPCGV 691
+LA L KVE + G G+
Sbjct: 123 EELAKLANKVELIVQGKASGI 143
|
Length = 307 |
| >gnl|CDD|226917 COG4542, PduX, Protein involved in propanediol utilization, and related proteins (includes coumermycin biosynthetic protein), possible kinase [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 43.6 bits (103), Expect = 2e-04
Identities = 28/95 (29%), Positives = 45/95 (47%), Gaps = 9/95 (9%)
Query: 632 ISMLVSSAVPEGKGVSSSASVEVASMSAIAAAHGLNIHPRDLALLCQKVE--NHIVGAPC 689
I +L+ S++P GKG++SS + VA+ A A G + ++A LC +E + I+
Sbjct: 84 IDLLLQSSIPVGKGMASSTADLVATARATARFLGRELRESEIAKLCVSIEPTDSIIFDKA 143
Query: 690 GVMDQMA----SACGEANKLLAMVCQPAELLGVVE 720
+ DQ GE L +V + G VE
Sbjct: 144 TLFDQREGRVIEFLGEMPPLHILVFEG---KGTVE 175
|
Length = 293 |
| >gnl|CDD|179677 PRK03926, PRK03926, mevalonate kinase; Provisional | Back alignment and domain information |
|---|
Score = 43.5 bits (103), Expect = 3e-04
Identities = 24/71 (33%), Positives = 39/71 (54%), Gaps = 1/71 (1%)
Query: 630 DSISMLVSSAVPEGKGVSSSASVEVASMSAIAAAHGLNIHPRDLALLCQKVENHIVGAPC 689
D +++ ++S +P G G+ SSA+V VA++ A+ GL + ++A L KVE + GA
Sbjct: 74 DGVTVSITSQIPVGSGLGSSAAVTVATIGALNRLLGLGLSLEEIAKLGHKVELLVQGAAS 133
Query: 690 GVMDQMASACG 700
D S G
Sbjct: 134 PT-DTYVSTMG 143
|
Length = 302 |
| >gnl|CDD|99974 cd03801, GT1_YqgM_like, This family is most closely related to the GT1 family of glycosyltransferases and named after YqgM in Bacillus licheniformis about which little is known | Back alignment and domain information |
|---|
Score = 41.2 bits (97), Expect = 0.002
Identities = 59/336 (17%), Positives = 100/336 (29%), Gaps = 79/336 (23%)
Query: 14 KHLVFAYYVTGHGFGHATRVVEVVRNLISAGHDVHVVTGAPDFVFTSEIQSPRLFIRKVL 73
K L+ G V+E+ R L + GH+V V+T + E + +R
Sbjct: 1 KILLVTPEYPPSVGGAERHVLELARALAARGHEVTVLTPGDGGLPDEEEVGGIVVVRPPP 60
Query: 74 LDCGAVQADALTVDRLASLEKYSETAVAPRKSILKDEVEWLNSIKADLVVS---DVVPVA 130
L L + L + D+V + + A
Sbjct: 61 LLRVRRLLLLLLLALRLRR--------------------LLRRERFDVVHAHDWLALLAA 100
Query: 131 CRAAADAGIRSVCVTNFSWDFIYAEYVMAAGHHHRSIVWQIAEDYSHC--------EFLI 182
AA GI V + + R++ + E L
Sbjct: 101 ALAARLLGIPLVLTVHGLEFGRPGNELGLLLKLARALERRALRRADRIIAVSEATREELR 160
Query: 183 RLPGYCPMPAFRDVIDVPLVVR--RLHKSRKEVRKELGIEDDVKLLILNFGGQPAGWK-- 238
L G + +P V R + + R+ LGI +D +++ F G+ K
Sbjct: 161 ELGG----VPPEKITVIPNGVDTERFRPAPRAARRRLGIPEDEPVIL--FVGRLVPRKGV 214
Query: 239 ---------LKEEYLPSGWKCLVCG-----------ASDSQLPPNFI---KLPKDAYTPD 275
L++EY + ++ G A++ L +P + P
Sbjct: 215 DLLLEALAKLRKEY--PDVRLVIVGDGPLREELEALAAELGLGDRVTFLGFVPDED-LPA 271
Query: 276 FMAASDCM--------LGKIGYGTVSEALAYKLPFV 303
AA+D G + EA+A LP V
Sbjct: 272 LYAAADVFVLPSLYEGFG----LVLLEAMAAGLPVV 303
|
Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility. The members of this family are found mainly in certain bacteria and archaea. Length = 374 |
| >gnl|CDD|204502 pfam10509, GalKase_gal_bdg, Galactokinase galactose-binding signature | Back alignment and domain information |
|---|
Score = 35.9 bits (84), Expect = 0.003
Identities = 17/42 (40%), Positives = 24/42 (57%)
Query: 494 EEEIFVARAPGRLDVMGGIADYSGSLVLQMPIREACHVALQK 535
E VA APGR++++G DY+G VL I +VA+ K
Sbjct: 10 VEPEGVASAPGRVNLIGEHTDYNGGFVLPAAINLDTYVAVSK 51
|
This is the highly conserved galactokinase signature sequence which appears to be present in all galactokinases irrespective of how many other ATP binding sites, etc that they carry. The function of this domain appears to be to bind galactose, and the domain is normally at the N-terminus of the enzymes, EC:2.7.1.6. This domain is associated with the families GHMP_kinases_C, pfam08544 and GHMP_kinases_N, pfam00288. Length = 52 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 838 | |||
| COG0153 | 390 | GalK Galactokinase [Carbohydrate transport and met | 100.0 | |
| PLN02865 | 423 | galactokinase | 100.0 | |
| PTZ00290 | 468 | galactokinase; Provisional | 100.0 | |
| PRK05322 | 387 | galactokinase; Provisional | 100.0 | |
| PLN02521 | 497 | galactokinase | 100.0 | |
| PRK05101 | 382 | galactokinase; Provisional | 100.0 | |
| PRK00555 | 363 | galactokinase; Provisional | 100.0 | |
| TIGR00131 | 386 | gal_kin galactokinase. The galactokinases found by | 100.0 | |
| PF13528 | 318 | Glyco_trans_1_3: Glycosyl transferase family 1 | 100.0 | |
| PRK03817 | 351 | galactokinase; Provisional | 99.97 | |
| PHA03392 | 507 | egt ecdysteroid UDP-glucosyltransferase; Provision | 99.97 | |
| TIGR00549 | 273 | mevalon_kin mevalonate kinase. Paracoccus exhibits | 99.95 | |
| PF00201 | 500 | UDPGT: UDP-glucoronosyl and UDP-glucosyl transfera | 99.95 | |
| PRK12446 | 352 | undecaprenyldiphospho-muramoylpentapeptide beta-N- | 99.95 | |
| cd03784 | 401 | GT1_Gtf_like This family includes the Gtfs, a grou | 99.94 | |
| KOG0631 | 489 | consensus Galactokinase [Carbohydrate transport an | 99.94 | |
| TIGR00661 | 321 | MJ1255 conserved hypothetical protein. This model | 99.94 | |
| PLN02677 | 387 | mevalonate kinase | 99.94 | |
| TIGR01220 | 358 | Pmev_kin_Gr_pos phosphomevalonate kinase, ERG8-typ | 99.93 | |
| PRK13412 | 974 | fkp bifunctional fucokinase/L-fucose-1-P-guanylylt | 99.93 | |
| COG0707 | 357 | MurG UDP-N-acetylglucosamine:LPS N-acetylglucosami | 99.92 | |
| PLN02208 | 442 | glycosyltransferase family protein | 99.92 | |
| COG1819 | 406 | Glycosyl transferases, related to UDP-glucuronosyl | 99.92 | |
| TIGR01426 | 392 | MGT glycosyltransferase, MGT family. This model de | 99.92 | |
| KOG1511 | 397 | consensus Mevalonate kinase MVK/ERG12 [Lipid trans | 99.92 | |
| PRK03926 | 302 | mevalonate kinase; Provisional | 99.9 | |
| PLN03007 | 482 | UDP-glucosyltransferase family protein | 99.89 | |
| PLN00414 | 446 | glycosyltransferase family protein | 99.88 | |
| PLN02210 | 456 | UDP-glucosyl transferase | 99.88 | |
| COG1577 | 307 | ERG12 Mevalonate kinase [Lipid metabolism] | 99.88 | |
| PLN02670 | 472 | transferase, transferring glycosyl groups | 99.88 | |
| PLN02173 | 449 | UDP-glucosyl transferase family protein | 99.87 | |
| PLN02448 | 459 | UDP-glycosyltransferase family protein | 99.87 | |
| PLN02764 | 453 | glycosyltransferase family protein | 99.87 | |
| PLN02410 | 451 | UDP-glucoronosyl/UDP-glucosyl transferase family p | 99.87 | |
| COG4671 | 400 | Predicted glycosyl transferase [General function p | 99.86 | |
| PLN02992 | 481 | coniferyl-alcohol glucosyltransferase | 99.86 | |
| PLN02207 | 468 | UDP-glycosyltransferase | 99.85 | |
| PLN02562 | 448 | UDP-glycosyltransferase | 99.84 | |
| PLN03004 | 451 | UDP-glycosyltransferase | 99.84 | |
| PLN02554 | 481 | UDP-glycosyltransferase family protein | 99.84 | |
| PTZ00298 | 328 | mevalonate kinase; Provisional | 99.84 | |
| PLN02555 | 480 | limonoid glucosyltransferase | 99.84 | |
| PLN02863 | 477 | UDP-glucoronosyl/UDP-glucosyl transferase family p | 99.84 | |
| PLN00164 | 480 | glucosyltransferase; Provisional | 99.83 | |
| PLN02152 | 455 | indole-3-acetate beta-glucosyltransferase | 99.83 | |
| COG2605 | 333 | Predicted kinase related to galactokinase and meva | 99.83 | |
| PLN02167 | 475 | UDP-glycosyltransferase family protein | 99.82 | |
| PRK00726 | 357 | murG undecaprenyldiphospho-muramoylpentapeptide be | 99.81 | |
| PLN03015 | 470 | UDP-glucosyl transferase | 99.81 | |
| PLN02534 | 491 | UDP-glycosyltransferase | 99.8 | |
| cd03785 | 350 | GT1_MurG MurG is an N-acetylglucosaminyltransferas | 99.8 | |
| KOG1192 | 496 | consensus UDP-glucuronosyl and UDP-glucosyl transf | 99.79 | |
| PLN02605 | 382 | monogalactosyldiacylglycerol synthase | 99.79 | |
| TIGR03590 | 279 | PseG pseudaminic acid biosynthesis-associated prot | 99.78 | |
| PRK13608 | 391 | diacylglycerol glucosyltransferase; Provisional | 99.77 | |
| PRK13609 | 380 | diacylglycerol glucosyltransferase; Provisional | 99.76 | |
| TIGR01133 | 348 | murG undecaprenyldiphospho-muramoylpentapeptide be | 99.73 | |
| TIGR00215 | 385 | lpxB lipid-A-disaccharide synthase. Lipid-A precur | 99.68 | |
| TIGR00154 | 293 | ispE 4-diphosphocytidyl-2C-methyl-D-erythritol kin | 99.67 | |
| PRK00128 | 286 | ipk 4-diphosphocytidyl-2-C-methyl-D-erythritol kin | 99.67 | |
| PRK02534 | 312 | 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; | 99.66 | |
| PF10509 | 52 | GalKase_gal_bdg: Galactokinase galactose-binding s | 99.65 | |
| COG3980 | 318 | spsG Spore coat polysaccharide biosynthesis protei | 99.52 | |
| PF00288 | 67 | GHMP_kinases_N: GHMP kinases N terminal domain; In | 99.5 | |
| PRK00025 | 380 | lpxB lipid-A-disaccharide synthase; Reviewed | 99.49 | |
| TIGR01219 | 454 | Pmev_kin_ERG8 phosphomevalonate kinase, ERG8-type, | 99.48 | |
| PF04101 | 167 | Glyco_tran_28_C: Glycosyltransferase family 28 C-t | 99.48 | |
| PRK01123 | 282 | shikimate kinase; Provisional | 99.44 | |
| TIGR01920 | 261 | Shik_kin_archae shikimate kinase. This model repre | 99.4 | |
| TIGR03492 | 396 | conserved hypothetical protein. This protein famil | 99.39 | |
| PRK00343 | 271 | ipk 4-diphosphocytidyl-2-C-methyl-D-erythritol kin | 99.32 | |
| PRK14611 | 275 | 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; | 99.31 | |
| PLN02871 | 465 | UDP-sulfoquinovose:DAG sulfoquinovosyltransferase | 99.26 | |
| PLN02451 | 370 | homoserine kinase | 99.24 | |
| cd03814 | 364 | GT1_like_2 This family is most closely related to | 99.22 | |
| KOG0631 | 489 | consensus Galactokinase [Carbohydrate transport an | 99.19 | |
| PRK14608 | 290 | 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; | 99.17 | |
| cd04962 | 371 | GT1_like_5 This family is most closely related to | 99.17 | |
| COG0083 | 299 | ThrB Homoserine kinase [Amino acid transport and m | 99.14 | |
| cd03816 | 415 | GT1_ALG1_like This family is most closely related | 99.09 | |
| cd03825 | 365 | GT1_wcfI_like This family is most closely related | 99.08 | |
| cd03817 | 374 | GT1_UGDG_like This family is most closely related | 99.08 | |
| TIGR00191 | 302 | thrB homoserine kinase. P.aeruginosa homoserine ki | 99.07 | |
| cd03808 | 359 | GT1_cap1E_like This family is most closely related | 99.04 | |
| PRK14616 | 287 | 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; | 99.04 | |
| cd03794 | 394 | GT1_wbuB_like This family is most closely related | 99.04 | |
| cd04951 | 360 | GT1_WbdM_like This family is most closely related | 99.03 | |
| cd03820 | 348 | GT1_amsD_like This family is most closely related | 99.03 | |
| PF04007 | 335 | DUF354: Protein of unknown function (DUF354); Inte | 99.02 | |
| TIGR03088 | 374 | stp2 sugar transferase, PEP-CTERM/EpsH1 system ass | 99.02 | |
| cd03823 | 359 | GT1_ExpE7_like This family is most closely related | 99.02 | |
| PRK03188 | 300 | 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; | 99.01 | |
| TIGR00144 | 324 | beta_RFAP_syn beta-RFAP synthase. This protein fam | 99.0 | |
| PRK14614 | 280 | 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; | 98.98 | |
| cd03819 | 355 | GT1_WavL_like This family is most closely related | 98.98 | |
| cd03812 | 358 | GT1_CapH_like This family is most closely related | 98.97 | |
| cd03807 | 365 | GT1_WbnK_like This family is most closely related | 98.97 | |
| PRK14609 | 269 | 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; | 98.97 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.94 | |
| PRK14612 | 276 | 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; | 98.93 | |
| cd03801 | 374 | GT1_YqgM_like This family is most closely related | 98.93 | |
| PRK10307 | 412 | putative glycosyl transferase; Provisional | 98.92 | |
| cd03811 | 353 | GT1_WabH_like This family is most closely related | 98.92 | |
| PRK01212 | 301 | homoserine kinase; Provisional | 98.91 | |
| PRK14615 | 296 | 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; | 98.91 | |
| TIGR00236 | 365 | wecB UDP-N-acetylglucosamine 2-epimerase. Epimeras | 98.89 | |
| cd03786 | 363 | GT1_UDP-GlcNAc_2-Epimerase Bacterial members of th | 98.88 | |
| COG1685 | 278 | Archaeal shikimate kinase [Amino acid transport an | 98.87 | |
| TIGR03449 | 405 | mycothiol_MshA UDP-N-acetylglucosamine: 1L-myo-ino | 98.84 | |
| cd03821 | 375 | GT1_Bme6_like This family is most closely related | 98.83 | |
| cd03800 | 398 | GT1_Sucrose_synthase This family is most closely r | 98.82 | |
| cd03805 | 392 | GT1_ALG2_like This family is most closely related | 98.82 | |
| PRK05749 | 425 | 3-deoxy-D-manno-octulosonic-acid transferase; Revi | 98.79 | |
| cd03799 | 355 | GT1_amsK_like This is a family of GT1 glycosyltran | 98.78 | |
| cd03796 | 398 | GT1_PIG-A_like This family is most closely related | 98.78 | |
| PTZ00299 | 336 | homoserine kinase; Provisional | 98.76 | |
| cd03798 | 377 | GT1_wlbH_like This family is most closely related | 98.76 | |
| PRK00650 | 288 | 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; | 98.73 | |
| cd03818 | 396 | GT1_ExpC_like This family is most closely related | 98.73 | |
| TIGR01240 | 305 | mevDPdecarb diphosphomevalonate decarboxylase. Alt | 98.71 | |
| cd03795 | 357 | GT1_like_4 This family is most closely related to | 98.69 | |
| cd03822 | 366 | GT1_ecORF704_like This family is most closely rela | 98.67 | |
| cd03802 | 335 | GT1_AviGT4_like This family is most closely relate | 98.66 | |
| PLN02275 | 371 | transferase, transferring glycosyl groups | 98.65 | |
| cd03792 | 372 | GT1_Trehalose_phosphorylase Trehalose phosphorylas | 98.65 | |
| cd05844 | 367 | GT1_like_7 Glycosyltransferases catalyze the trans | 98.63 | |
| PRK09922 | 359 | UDP-D-galactose:(glucosyl)lipopolysaccharide-1,6-D | 98.62 | |
| PRK00654 | 466 | glgA glycogen synthase; Provisional | 98.53 | |
| TIGR02472 | 439 | sucr_P_syn_N sucrose-phosphate synthase, putative, | 98.5 | |
| PRK15427 | 406 | colanic acid biosynthesis glycosyltransferase WcaL | 98.48 | |
| PRK15490 | 578 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.47 | |
| TIGR02095 | 473 | glgA glycogen/starch synthases, ADP-glucose type. | 98.47 | |
| PRK14610 | 283 | 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; | 98.46 | |
| PRK14089 | 347 | ipid-A-disaccharide synthase; Provisional | 98.4 | |
| PRK15484 | 380 | lipopolysaccharide 1,2-N-acetylglucosaminetransfer | 98.37 | |
| PLN02846 | 462 | digalactosyldiacylglycerol synthase | 98.36 | |
| KOG3349 | 170 | consensus Predicted glycosyltransferase [General f | 98.36 | |
| PF02684 | 373 | LpxB: Lipid-A-disaccharide synthetase; InterPro: I | 98.35 | |
| PRK10125 | 405 | putative glycosyl transferase; Provisional | 98.34 | |
| PRK04181 | 257 | 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; | 98.34 | |
| cd01635 | 229 | Glycosyltransferase_GTB_type Glycosyltransferases | 98.33 | |
| COG0763 | 381 | LpxB Lipid A disaccharide synthetase [Cell envelop | 98.33 | |
| TIGR02149 | 388 | glgA_Coryne glycogen synthase, Corynebacterium fam | 98.31 | |
| cd03809 | 365 | GT1_mtfB_like This family is most closely related | 98.3 | |
| cd04955 | 363 | GT1_like_6 This family is most closely related to | 98.3 | |
| PRK01021 | 608 | lpxB lipid-A-disaccharide synthase; Reviewed | 98.27 | |
| KOG4644 | 948 | consensus L-fucose kinase [Carbohydrate transport | 98.24 | |
| TIGR03087 | 397 | stp1 sugar transferase, PEP-CTERM/EpsH1 system ass | 98.22 | |
| PRK14099 | 485 | glycogen synthase; Provisional | 98.19 | |
| TIGR02470 | 784 | sucr_synth sucrose synthase. This model represents | 98.19 | |
| TIGR03568 | 365 | NeuC_NnaA UDP-N-acetyl-D-glucosamine 2-epimerase, | 98.16 | |
| cd03791 | 476 | GT1_Glycogen_synthase_DULL1_like This family is mo | 98.13 | |
| cd03804 | 351 | GT1_wbaZ_like This family is most closely related | 98.1 | |
| TIGR02468 | 1050 | sucrsPsyn_pln sucrose phosphate synthase/possible | 98.09 | |
| PLN02407 | 343 | diphosphomevalonate decarboxylase | 98.09 | |
| PLN02316 | 1036 | synthase/transferase | 98.02 | |
| PLN02501 | 794 | digalactosyldiacylglycerol synthase | 98.02 | |
| PRK14613 | 297 | 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; | 97.97 | |
| cd04950 | 373 | GT1_like_1 Glycosyltransferases catalyze the trans | 97.96 | |
| cd03806 | 419 | GT1_ALG11_like This family is most closely related | 97.94 | |
| COG1817 | 346 | Uncharacterized protein conserved in archaea [Func | 97.93 | |
| PRK05905 | 258 | hypothetical protein; Provisional | 97.91 | |
| PLN02939 | 977 | transferase, transferring glycosyl groups | 97.91 | |
| COG4542 | 293 | PduX Protein involved in propanediol utilization, | 97.88 | |
| PLN00142 | 815 | sucrose synthase | 97.84 | |
| PF03033 | 139 | Glyco_transf_28: Glycosyltransferase family 28 N-t | 97.82 | |
| PF02350 | 346 | Epimerase_2: UDP-N-acetylglucosamine 2-epimerase; | 97.8 | |
| COG1947 | 289 | IspE 4-diphosphocytidyl-2C-methyl-D-erythritol 2-p | 97.78 | |
| PF00534 | 172 | Glycos_transf_1: Glycosyl transferases group 1; In | 97.73 | |
| cd03813 | 475 | GT1_like_3 This family is most closely related to | 97.7 | |
| COG3407 | 329 | MVD1 Mevalonate pyrophosphate decarboxylase [Lipid | 97.63 | |
| COG0381 | 383 | WecB UDP-N-acetylglucosamine 2-epimerase [Cell env | 97.59 | |
| cd04949 | 372 | GT1_gtfA_like This family is most closely related | 97.58 | |
| COG3890 | 337 | ERG8 Phosphomevalonate kinase [Lipid metabolism] | 97.53 | |
| COG1829 | 283 | Predicted archaeal kinase (sugar kinase superfamil | 97.42 | |
| PLN02949 | 463 | transferase, transferring glycosyl groups | 97.27 | |
| COG5017 | 161 | Uncharacterized conserved protein [Function unknow | 96.88 | |
| KOG2833 | 395 | consensus Mevalonate pyrophosphate decarboxylase [ | 96.74 | |
| PF13692 | 135 | Glyco_trans_1_4: Glycosyl transferases group 1; PD | 96.65 | |
| TIGR02918 | 500 | accessory Sec system glycosylation protein GtfA. M | 96.5 | |
| PHA01633 | 335 | putative glycosyl transferase group 1 | 96.42 | |
| PRK14098 | 489 | glycogen synthase; Provisional | 96.3 | |
| cd04946 | 407 | GT1_AmsK_like This family is most closely related | 96.1 | |
| PRK09814 | 333 | beta-1,6-galactofuranosyltransferase; Provisional | 96.03 | |
| COG1907 | 312 | Predicted archaeal sugar kinases [General function | 95.99 | |
| PF06258 | 311 | Mito_fiss_Elm1: Mitochondrial fission ELM1; InterP | 95.8 | |
| COG1519 | 419 | KdtA 3-deoxy-D-manno-octulosonic-acid transferase | 95.69 | |
| KOG1537 | 355 | consensus Homoserine kinase [Amino acid transport | 95.16 | |
| PHA01630 | 331 | putative group 1 glycosyl transferase | 94.2 | |
| KOG4519 | 459 | consensus Phosphomevalonate kinase [Lipid transpor | 93.69 | |
| COG2099 | 257 | CobK Precorrin-6x reductase [Coenzyme metabolism] | 93.62 | |
| TIGR02195 | 334 | heptsyl_trn_II lipopolysaccharide heptosyltransfer | 93.08 | |
| PF13477 | 139 | Glyco_trans_4_2: Glycosyl transferase 4-like | 93.0 | |
| PF02571 | 249 | CbiJ: Precorrin-6x reductase CbiJ/CobK; InterPro: | 92.8 | |
| PF08660 | 170 | Alg14: Oligosaccharide biosynthesis protein Alg14 | 92.73 | |
| COG3660 | 329 | Predicted nucleoside-diphosphate-sugar epimerase [ | 92.21 | |
| PF13579 | 160 | Glyco_trans_4_4: Glycosyl transferase 4-like domai | 92.04 | |
| PRK10916 | 348 | ADP-heptose:LPS heptosyltransferase II; Provisiona | 91.91 | |
| TIGR00715 | 256 | precor6x_red precorrin-6x reductase. This enzyme w | 91.89 | |
| PF13844 | 468 | Glyco_transf_41: Glycosyl transferase family 41; P | 91.55 | |
| cd03789 | 279 | GT1_LPS_heptosyltransferase Lipopolysaccharide hep | 90.36 | |
| PF01975 | 196 | SurE: Survival protein SurE; InterPro: IPR002828 T | 90.27 | |
| COG3914 | 620 | Spy Predicted O-linked N-acetylglucosamine transfe | 90.06 | |
| KOG1111 | 426 | consensus N-acetylglucosaminyltransferase complex, | 90.04 | |
| COG0859 | 334 | RfaF ADP-heptose:LPS heptosyltransferase [Cell env | 89.86 | |
| PF06925 | 169 | MGDG_synth: Monogalactosyldiacylglycerol (MGDG) sy | 89.73 | |
| TIGR02400 | 456 | trehalose_OtsA alpha,alpha-trehalose-phosphate syn | 89.22 | |
| PF13439 | 177 | Glyco_transf_4: Glycosyltransferase Family 4; PDB: | 89.19 | |
| PRK10422 | 352 | lipopolysaccharide core biosynthesis protein; Prov | 88.22 | |
| PF01075 | 247 | Glyco_transf_9: Glycosyltransferase family 9 (hept | 85.11 | |
| TIGR02201 | 344 | heptsyl_trn_III lipopolysaccharide heptosyltransfe | 84.44 | |
| PRK08057 | 248 | cobalt-precorrin-6x reductase; Reviewed | 81.23 | |
| cd03788 | 460 | GT1_TPS Trehalose-6-Phosphate Synthase (TPS) is a | 80.67 |
| >COG0153 GalK Galactokinase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-53 Score=448.24 Aligned_cols=254 Identities=31% Similarity=0.500 Sum_probs=209.3
Q ss_pred HHHHHhccCCCCCceEEEEccccccccccccccCCCeeeccccccceEEEEEEcCCccchhhhhhhhccCCCCCCCCCeE
Q 003222 483 ERKAAAGLFNWEEEIFVARAPGRLDVMGGIADYSGSLVLQMPIREACHVALQKISPSKQRLWKHALARHNDKGQGPMPVL 562 (838)
Q Consensus 483 ~~~~~~~~f~~~~~~~~~~APGRv~L~GeH~Dy~gg~vl~~ai~~~~~v~~~~~~d~~~~l~~~~~~~~~~~~~~~~~~i 562 (838)
-..-++..|+..++...++|||||||||||||||||+|||||||.+|++++.+|+|.++++++.+
T Consensus 9 ~~~~f~~~f~~~~~~~~~~aPGRvNLIGEHtDYn~G~VlP~Ain~~t~v~v~~r~d~~v~l~s~n--------------- 73 (390)
T COG0153 9 LQALFAEHFGYVEPTVTAFAPGRVNLIGEHTDYNGGFVLPCAINYGTYVAVAKRDDGKVRLYSAN--------------- 73 (390)
T ss_pred HHHHHHHHhcccCcceEecCCceEEeeccceeccCceEEEEEeecceEEEEEEccCceEEEEeCC---------------
Confidence 33345567776567789999999999999999999999999999999999999999887766542
Q ss_pred EEEecccccCCCCCceeccCCccccCCCCcchhhhhcccCCCCCCChhHHHHHHHHHHHHHhCCCCCCCEEEEEEeCCCC
Q 003222 563 QIVSYGSELSNRGPTFDMDLSDFMDEGKPMSYEKAKKYFDTNPSQKWAAYVAGTILVLMTELGVRFEDSISMLVSSAVPE 642 (838)
Q Consensus 563 ~i~s~~~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~~~~~~w~~y~~g~i~~~~~~~g~~~~~g~~i~i~s~iP~ 642 (838)
. .+....+..+ ++ +.+ .+..+|+||++|++..+ +..|+.+ .|++++|.||||.
T Consensus 74 ------~--~~~~~~~~~~-~d-------~~~---------~~~~~W~nYvkgvi~~l-~~~g~~~-~G~~i~i~gnIP~ 126 (390)
T COG0153 74 ------F--GNAGDIFFLL-LD-------IAK---------EKIDDWANYVKGVIKAL-QKRGYAF-TGLDIVISGNIPI 126 (390)
T ss_pred ------C--ccccceeecc-hh-------hcc---------cccchhhhhHHHHHHHH-HhcCCCc-CCeeEEEecCCCC
Confidence 1 1111111111 11 111 24479999999998875 4889988 6999999999999
Q ss_pred CCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhhhcCCCCChhhHHHhhcCCCCeEEEEEecCCceeeeeccC
Q 003222 643 GKGVSSSASVEVASMSAIAAAHGLNIHPRDLALLCQKVENHIVGAPCGVMDQMASACGEANKLLAMVCQPAELLGVVEIP 722 (838)
Q Consensus 643 g~GLgSSAA~~va~~~al~~l~~~~l~~~ela~~a~~~E~~~~G~~~G~mDq~a~~~G~~~~~l~~d~~~~~~~~~v~~~ 722 (838)
|+|||||||++|+++.++..++++++++.+++++||.+||+|+|+|||+|||++++||+++|++++||+++++ +++++|
T Consensus 127 GaGLSSSAAleva~~~al~~l~~~~~~k~~la~i~q~AEn~fvGvn~G~mDQ~~s~~G~~~~al~ld~~~l~~-~~~~~p 205 (390)
T COG0153 127 GAGLSSSAALEVAVALALQRLFNLPLDKAELAKIAQVAENQFVGVNCGIMDQLASAFGKKDHALLLDCRTLEY-EPVPFP 205 (390)
T ss_pred CCCcCchHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhhccCCcCchHHHHHHHhCCCCcEEEEEcccCce-EEeccC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999998 899998
Q ss_pred CC-eEEEEEeCCCCCcCCCCchhhHHHHHhcChHHHhcccCCCCCCCCCCCCCCCCCCcccchhHHHHhhhccccccCCC
Q 003222 723 SH-IRFWGIDSGIRHSVGGADYGSVRAGAFMGRKMIKSTASGMLPQSLPSSNGLNNIEPEVDGVELLEAEASLDYLCNLS 801 (838)
Q Consensus 723 ~~-~~~vi~~s~~~~~~~~~~y~~~r~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~ 801 (838)
.. +.|||+||+++|.+++++||.|| ++||++++.|+. .++.|++++
T Consensus 206 ~~~~~ivI~ns~vkr~la~seYn~Rr-------------------------------~ece~A~~~l~~--~~~~L~d~~ 252 (390)
T COG0153 206 VGGVSIVIVNSNVKRELADSEYNERR-------------------------------AECEEAAEFLGV--SIKSLRDVT 252 (390)
T ss_pred ccceEEEEecCCCccccchhHHHHHH-------------------------------HHHHHHHHHHHH--hhhhhhhcC
Confidence 55 99999999999999999996655 455666666655 255677777
Q ss_pred hhhHHHHHhccC
Q 003222 802 PHRFEALYAKNI 813 (838)
Q Consensus 802 ~~~~~~~~~~~~ 813 (838)
+..|++ +.+.|
T Consensus 253 ~~~~~~-~~~~i 263 (390)
T COG0153 253 DEEFAA-LQAEI 263 (390)
T ss_pred HHHHHh-hhhhc
Confidence 777766 44444
|
|
| >PLN02865 galactokinase | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-45 Score=405.54 Aligned_cols=244 Identities=21% Similarity=0.296 Sum_probs=198.7
Q ss_pred HHHHHHhccCCCCCc-eEEEEccccccccccccccCCCeeeccccccceEEEEEEcCCccchhhhhhhhccCCCCCCCCC
Q 003222 482 RERKAAAGLFNWEEE-IFVARAPGRLDVMGGIADYSGSLVLQMPIREACHVALQKISPSKQRLWKHALARHNDKGQGPMP 560 (838)
Q Consensus 482 ~~~~~~~~~f~~~~~-~~~~~APGRv~L~GeH~Dy~gg~vl~~ai~~~~~v~~~~~~d~~~~l~~~~~~~~~~~~~~~~~ 560 (838)
+-...+...||.+++ ..+++|||||||||||||||||+||||||+++|+++++++++++++++|.
T Consensus 14 ~l~~~F~~~fg~~p~~~~~~~APGRVnlIGEHtDYngG~VLp~AI~~~~~va~~~~~~~~i~v~s~-------------- 79 (423)
T PLN02865 14 EIRERVAAMSGRNSGEVRVVVSPYRICPLGAHIDHQGGTVSAMTINKGILLGFVPSGDPEVLLRSA-------------- 79 (423)
T ss_pred HHHHHHHHHhCCCcccceEEEcCcceecccccccCCCCeEEeEEeeccEEEEEEECCCCEEEEEEC--------------
Confidence 345567789997654 26889999999999999999999999999999999999999876655432
Q ss_pred eEEEEecccccCCCCCceeccCCccccCCCCcchhhhhcccCCCCCCChhHHHHHHHHHHHHHhCCCCCCCEEEEEEeCC
Q 003222 561 VLQIVSYGSELSNRGPTFDMDLSDFMDEGKPMSYEKAKKYFDTNPSQKWAAYVAGTILVLMTELGVRFEDSISMLVSSAV 640 (838)
Q Consensus 561 ~i~i~s~~~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~~~~~~w~~y~~g~i~~~~~~~g~~~~~g~~i~i~s~i 640 (838)
++ . ..+++++++.. .|..+. .....+..+|+||++|++..+. +.|..+..||++.|.|+|
T Consensus 80 -------~~--~---~~~~~~~~~~~---~~~~~~----~~~~~~~~~W~~Yv~gv~~~l~-~~g~~~~~G~~~~v~g~v 139 (423)
T PLN02865 80 -------QF--E---GEVRFRVDEIQ---HPIANV----SSDSKEESNWGDYARGAVYALQ-SRGHALSQGITGYISGSE 139 (423)
T ss_pred -------CC--C---CceEEeccccc---cccccc----cccCCCCCCHHHHHHHHHHHHH-HcCCCCCCceEEEEECCC
Confidence 11 0 01223332210 011000 0011244789999999999875 677765579999999999
Q ss_pred -CCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhhhcCCCCChhhHHHhhcCCCCeEEEEEecCCceeeee
Q 003222 641 -PEGKGVSSSASVEVASMSAIAAAHGLNIHPRDLALLCQKVENHIVGAPCGVMDQMASACGEANKLLAMVCQPAELLGVV 719 (838)
Q Consensus 641 -P~g~GLgSSAA~~va~~~al~~l~~~~l~~~ela~~a~~~E~~~~G~~~G~mDq~a~~~G~~~~~l~~d~~~~~~~~~v 719 (838)
|.|+|||||||++||++.|++.+++..+++++++++|+++||.++|+|||+|||+++++|..++++++||+++.+ +.+
T Consensus 140 pP~gsGLsSSAAl~va~~~al~~~~~~~~~~~~la~~a~~~E~~~~G~~~G~mDQ~as~~~~~g~~~~iDf~~l~~-~~v 218 (423)
T PLN02865 140 GLDSSGLSSSAAVGVAYLLALENANNLTVSPEDNIELDRLIENEYLGLRNGILDQSAILLSRYGCLTFMDCKTLDH-KLV 218 (423)
T ss_pred CCCCCcccHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhcCCCCccccHHHHHhcccCceEEEEccCCCc-cee
Confidence 589999999999999999999999999999999999999999999999999999999999999999999999876 556
Q ss_pred ccC-------CCeEEEEEeCCCCCcCC-CCchhhHHHHHhcChHHHhcc
Q 003222 720 EIP-------SHIRFWGIDSGIRHSVG-GADYGSVRAGAFMGRKMIKST 760 (838)
Q Consensus 720 ~~~-------~~~~~vi~~s~~~~~~~-~~~y~~~r~~~~~g~~~l~~~ 760 (838)
++| .++.|+++||+++|+++ +++||.||++|..+.+.|...
T Consensus 219 pl~~~~~~~~~~~~ivv~~s~~~h~l~~~~~Yn~Rr~Ec~~aa~~l~~~ 267 (423)
T PLN02865 219 SLQFQQPGGEKPFKILLAFSGLRHALTNKPGYNLRVSECQEAARFLLEA 267 (423)
T ss_pred ecCcccccCCCCeEEEEEeCCCchhhcccchhhHHHHHHHHHHHHHHHh
Confidence 655 46899999999999988 899999999999999888653
|
|
| >PTZ00290 galactokinase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-44 Score=402.23 Aligned_cols=296 Identities=25% Similarity=0.357 Sum_probs=215.2
Q ss_pred HHHHHhccCCCCCc-----eEEEEccccccccccccccCCCeeeccccccceEEEEEEcCCccchhhhhhhhccCCCCCC
Q 003222 483 ERKAAAGLFNWEEE-----IFVARAPGRLDVMGGIADYSGSLVLQMPIREACHVALQKISPSKQRLWKHALARHNDKGQG 557 (838)
Q Consensus 483 ~~~~~~~~f~~~~~-----~~~~~APGRv~L~GeH~Dy~gg~vl~~ai~~~~~v~~~~~~d~~~~l~~~~~~~~~~~~~~ 557 (838)
-...+...||.+++ .++++|||||||||||||||||+||||||+++|+++++++.+..
T Consensus 18 l~~~F~~~fG~~p~~~~~~~~~~~APGRVnLIGEHtDYngG~VLp~AId~~~~va~~~~~~~~----------------- 80 (468)
T PTZ00290 18 LKPIFLETFKVENDADVEWLLFTFAPGRVNFIGEHVDYMGGYVCPAAVLEGCHILVGRVKHFC----------------- 80 (468)
T ss_pred HHHHHHHHhCCCcccccceeEEEeccceeeecccccccCCCeeeeccccCcEEEEEeecCCCC-----------------
Confidence 34457789997653 17889999999999999999999999999999999998874310
Q ss_pred CCCeEEEEecccccCCCCCceeccCCccccCCCCcchhhhhcccCCCCCCChhHHHHHHHHHHHHHhCCCC----CCCEE
Q 003222 558 PMPVLQIVSYGSELSNRGPTFDMDLSDFMDEGKPMSYEKAKKYFDTNPSQKWAAYVAGTILVLMTELGVRF----EDSIS 633 (838)
Q Consensus 558 ~~~~i~i~s~~~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~~~~~~w~~y~~g~i~~~~~~~g~~~----~~g~~ 633 (838)
.+.+++.+.. . ..|+++ .... ..+...|+||++|++..++++.|..+ ..||+
T Consensus 81 -~~~i~~~~~~---~---~~~~~~--~~~~---------------~~~~~~W~nYv~gv~~~~l~~~g~~~~~~~~~G~d 136 (468)
T PTZ00290 81 -DHKLRFATET---D---EHFVLD--HLGG---------------AKHNKAWTTFVRGAATLRLNRLGVAIDAPSLQGVC 136 (468)
T ss_pred -CCeEEEEECC---C---ceeecC--cccc---------------cCCcccHHHHHHHHHHHHHHHhCCCcccCCCCCeE
Confidence 1234443211 0 122222 1100 11336899999999987677788742 25999
Q ss_pred EEEEeCCCCCCCCChHHHHHHHHHHHHHHHhCC--------------------CCCHHHHHHHHHHHHhhhcCCCCChhh
Q 003222 634 MLVSSAVPEGKGVSSSASVEVASMSAIAAAHGL--------------------NIHPRDLALLCQKVENHIVGAPCGVMD 693 (838)
Q Consensus 634 i~i~s~iP~g~GLgSSAA~~va~~~al~~l~~~--------------------~l~~~ela~~a~~~E~~~~G~~~G~mD 693 (838)
+.|.|+||.|+|||||||++||++.|++.+++. +.+..++|++||++||+|+|+|||+||
T Consensus 137 ~~i~gdVP~GaGLSSSAAleva~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lA~~aqraEn~~vGv~cGiMD 216 (468)
T PTZ00290 137 MVVHGTLPMGAGMSASASFGVALLNAINTVVTRRYKGCPTSPGRRYSILPPMSKEELIELAKQARRIETEFCGVNVGIMD 216 (468)
T ss_pred EEEeCCCCCCCCcchHHHHHHHHHHHHHHHhhhhccccccccccccccccccCcccHHHHHHHHHHHHHhhcCCCcchhh
Confidence 999999999999999999999999999998732 124489999999999999999999999
Q ss_pred HHHhhcCCCCeEEEEEecCCceeeeeccC----CCeEEEEEeCCCCCcCCCC---chhhHHHHHhcChHHHhcccCCCCC
Q 003222 694 QMASACGEANKLLAMVCQPAELLGVVEIP----SHIRFWGIDSGIRHSVGGA---DYGSVRAGAFMGRKMIKSTASGMLP 766 (838)
Q Consensus 694 q~a~~~G~~~~~l~~d~~~~~~~~~v~~~----~~~~~vi~~s~~~~~~~~~---~y~~~r~~~~~g~~~l~~~~~~~~~ 766 (838)
|++|++|++++++++||+++++ ++++++ .++.|||+||+++|+++++ +||.||++|..+.+.|.......+.
T Consensus 217 Q~asa~g~~~~al~iD~~~l~~-~~v~l~~~~~~~~~~vV~nS~v~h~l~~s~~~~Yn~Rr~ece~a~~~L~~~~l~~~~ 295 (468)
T PTZ00290 217 QFISAFAEEDKFMFLDCKSLTF-ESHDMTPLLGDGACFLLIDSMIKHDLLGGTAGMYNTVRSDQEGAQKKIGKHRYRGKP 295 (468)
T ss_pred HHHHHhCCCCcEEEEecCCCeE-EEeccCCCCCCCcEEEEEeCCCcchhccccchhhHHHHHHHHHHHHHhccccccchh
Confidence 9999999999999999999887 677764 5789999999999999877 9999999888777777533211110
Q ss_pred CCCCCCCCCCCCCc-ccchhHHHHhhhccccccCCChhhHHHHHhccCcccccHHHHHHHh
Q 003222 767 QSLPSSNGLNNIEP-EVDGVELLEAEASLDYLCNLSPHRFEALYAKNIPESIVEHQFVILY 826 (838)
Q Consensus 767 ~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~f~~~~ 826 (838)
.+++.-.. ....| -++....+. -.|+..|++..++. -++.|-|..|..+|++--
T Consensus 296 ~~Lrd~~~-~~~~~~~~~~~~~~~----~~~~~~l~~~~~~R-a~HVitEn~RV~~a~~al 350 (468)
T PTZ00290 296 FTFSDLVR-NPKKYTFDGDVVAFM----ESCKPLMTPGEFER-GTYNIMEQIRTLEFIKLN 350 (468)
T ss_pred hhHHHhhh-ccccccccccHHHHH----HHhhhcCCHHHHHH-HHHHhhHHHHHHHHHHHH
Confidence 00000000 00000 011112221 13566778877776 667788888888887654
|
|
| >PRK05322 galactokinase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-42 Score=388.51 Aligned_cols=233 Identities=27% Similarity=0.414 Sum_probs=191.7
Q ss_pred HHHHhccCCCCCceEEEEccccccccccccccCCCeeeccccccceEEEEEEcCCccchhhhhhhhccCCCCCCCCCeEE
Q 003222 484 RKAAAGLFNWEEEIFVARAPGRLDVMGGIADYSGSLVLQMPIREACHVALQKISPSKQRLWKHALARHNDKGQGPMPVLQ 563 (838)
Q Consensus 484 ~~~~~~~f~~~~~~~~~~APGRv~L~GeH~Dy~gg~vl~~ai~~~~~v~~~~~~d~~~~l~~~~~~~~~~~~~~~~~~i~ 563 (838)
...+...||.++ ..+++|||||||||||+||+||+|||+||+++|++++++++++++++.
T Consensus 7 ~~~f~~~fg~~p-~~~~~APgRv~L~GEH~d~~g~~vl~~AI~~~~~v~~~~~~~~~i~i~------------------- 66 (387)
T PRK05322 7 KKKFAEVFGEEA-EDVFFSPGRINLIGEHTDYNGGHVFPAAITLGTYGAARKRDDKKVRLY------------------- 66 (387)
T ss_pred HHHHHHHhCCCC-ceEEEcCceeEecccceeecCceeeeeeccceEEEEEEECCCCEEEEE-------------------
Confidence 334678899654 578899999999999999999999999999999999999988665543
Q ss_pred EEecccccCCCCCceeccCCccccCCCCcchhhhhcccCCCCCCChhHHHHHHHHHHHHHhCCCCCCCEEEEEEeCCCCC
Q 003222 564 IVSYGSELSNRGPTFDMDLSDFMDEGKPMSYEKAKKYFDTNPSQKWAAYVAGTILVLMTELGVRFEDSISMLVSSAVPEG 643 (838)
Q Consensus 564 i~s~~~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~~~~~~w~~y~~g~i~~~~~~~g~~~~~g~~i~i~s~iP~g 643 (838)
|.+.+. ...++++++++. ......|.+|++|++..+. +.+.++..||++.|.|+||.|
T Consensus 67 --s~~~~~---~~~~~~~~~~~~----------------~~~~~~w~~y~~gvi~~l~-~~~~~~~~g~~i~i~s~iP~g 124 (387)
T PRK05322 67 --SANFED---LGIIEFDLDDLS----------------FDKEDDWANYPKGVLKFLQ-EAGYKIDHGFDILIYGNIPNG 124 (387)
T ss_pred --ECCCCC---CceEEEeccccC----------------CCCccchHHHHHHHHHHHH-HcCCCCCCCEEEEEecCCCCC
Confidence 321100 001223332210 1123679999999988754 666654479999999999999
Q ss_pred CCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhhhcCCCCChhhHHHhhcCCCCeEEEEEecCCceeeeeccC-
Q 003222 644 KGVSSSASVEVASMSAIAAAHGLNIHPRDLALLCQKVENHIVGAPCGVMDQMASACGEANKLLAMVCQPAELLGVVEIP- 722 (838)
Q Consensus 644 ~GLgSSAA~~va~~~al~~l~~~~l~~~ela~~a~~~E~~~~G~~~G~mDq~a~~~G~~~~~l~~d~~~~~~~~~v~~~- 722 (838)
+|||||||++||++.|++.+++.++++++++++|+.+|+.++|+|||+|||+++++||.++++++||+++++ +.++++
T Consensus 125 sGLgSSAA~~va~~~al~~~~~~~l~~~~la~~a~~~E~~~~G~~sG~mDq~as~~G~~~~~~~~d~~~~~~-~~~~~~~ 203 (387)
T PRK05322 125 AGLSSSASIELLTGVILKDLFNLDLDRLELVKLGQKTENEFIGVNSGIMDQFAIGMGKKDHAILLDCNTLEY-EYVPLDL 203 (387)
T ss_pred CCccHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhccCCCCcchHHHHHHHhccCCeEEEEecCCCce-EEeccCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999998876 667775
Q ss_pred CCeEEEEEeCCCCCcCCCCchhhHHHHHhcChHHHhc
Q 003222 723 SHIRFWGIDSGIRHSVGGADYGSVRAGAFMGRKMIKS 759 (838)
Q Consensus 723 ~~~~~vi~~s~~~~~~~~~~y~~~r~~~~~g~~~l~~ 759 (838)
.++.|||+|||++|++.+++||.||.+|..+.+.|+.
T Consensus 204 ~~~~lvv~dsg~~~~~~~~~yn~r~~e~~~a~~~l~~ 240 (387)
T PRK05322 204 GDYVIVIMNTNKRRELADSKYNERRAECEKALEELQK 240 (387)
T ss_pred CCeEEEEEECCCccccCcchhhHHHHHHHHHHHHHhh
Confidence 4678999999999999999998888777666666654
|
|
| >PLN02521 galactokinase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-38 Score=360.65 Aligned_cols=232 Identities=25% Similarity=0.359 Sum_probs=188.7
Q ss_pred HHHhccCCCCCceEEEEccccccccccccccCCCeeeccccccceEEEEEEcCC-ccchhhhhhhhccCCCCCCCCCeEE
Q 003222 485 KAAAGLFNWEEEIFVARAPGRLDVMGGIADYSGSLVLQMPIREACHVALQKISP-SKQRLWKHALARHNDKGQGPMPVLQ 563 (838)
Q Consensus 485 ~~~~~~f~~~~~~~~~~APGRv~L~GeH~Dy~gg~vl~~ai~~~~~v~~~~~~d-~~~~l~~~~~~~~~~~~~~~~~~i~ 563 (838)
..+...||.++ .++++|||||||||||+|||||+||||||+++++++++++++ ++++
T Consensus 37 ~~F~~~fg~~p-~~~~~APGRVnLiGEHtDy~gg~vLp~AI~~~~~v~~~~~~~~~~i~--------------------- 94 (497)
T PLN02521 37 AAFVEVYGAKP-DLFARSPGRVNLIGEHIDYEGYSVLPMAIRQDTIVAIRRAEGSKKLR--------------------- 94 (497)
T ss_pred HHHHHHHCCCC-CEEEECCceEEEeccceeecCCeEEEEEEcCcEEEEEEEcCCCCEEE---------------------
Confidence 34678999754 578999999999999999999999999999999999999986 4444
Q ss_pred EEecccccCCCCCceeccCCccccCCCCcchhhhhcccCCCCCCChhHHH----HHHHHHHHHHhCCCC--CCCEEEEEE
Q 003222 564 IVSYGSELSNRGPTFDMDLSDFMDEGKPMSYEKAKKYFDTNPSQKWAAYV----AGTILVLMTELGVRF--EDSISMLVS 637 (838)
Q Consensus 564 i~s~~~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~~~~~~w~~y~----~g~i~~~~~~~g~~~--~~g~~i~i~ 637 (838)
+.+.+... ..+.++++... + .......|.||+ +|++..+. +.+..+ ..||++.|.
T Consensus 95 i~s~~~~~----~~~~~~~~~~~----~----------~~~~~~~W~nYv~~~~~gv~~~l~-~~~~~~~~~~g~~i~i~ 155 (497)
T PLN02521 95 IANVNDKY----TTCTFPADPDQ----E----------VDLANHKWGNYFICGYKGVFEFLK-SKGVDVGPPVGLDVVVD 155 (497)
T ss_pred EEECCCCC----CceeeecCccc----c----------cccccccHHHHHHHHHHHHHHHHH-HhccccCCCCCeEEEEe
Confidence 33321100 01112222100 0 011335799999 77777654 555433 249999999
Q ss_pred eCCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhhhcCCCCChhhHHHhhcCCCCeEEEEEecCCceee
Q 003222 638 SAVPEGKGVSSSASVEVASMSAIAAAHGLNIHPRDLALLCQKVENHIVGAPCGVMDQMASACGEANKLLAMVCQPAELLG 717 (838)
Q Consensus 638 s~iP~g~GLgSSAA~~va~~~al~~l~~~~l~~~ela~~a~~~E~~~~G~~~G~mDq~a~~~G~~~~~l~~d~~~~~~~~ 717 (838)
|+||+|+|||||||++||++.|++.+++.++++++++++|+++|+ ++|.+||+|||+++++|++|+++++||+++.+ +
T Consensus 156 s~IP~gsGLgSSAA~~vA~~~al~~~~~~~l~~~~la~la~~~E~-~~g~~~g~mDq~as~~g~~g~al~~d~~~l~~-~ 233 (497)
T PLN02521 156 GTVPTGSGLSSSAALVCSAAIAIMAALGLNFTKKEVAQFTCKCER-HIGTQSGGMDQAISIMAQQGVAKLIDFNPVRA-T 233 (497)
T ss_pred cCCCCCCCcchHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhC-ccCCCCChHHHHHHHhcCCCcEEEEecCCCce-E
Confidence 999999999999999999999999999999999999999999999 68999999999999999999999999999876 7
Q ss_pred eeccCCCeEEEEEeCCCCC---cCCCCchhhHHHHHhcChHHHhc
Q 003222 718 VVEIPSHIRFWGIDSGIRH---SVGGADYGSVRAGAFMGRKMIKS 759 (838)
Q Consensus 718 ~v~~~~~~~~vi~~s~~~~---~~~~~~y~~~r~~~~~g~~~l~~ 759 (838)
++++|.++.|||+||+++| .+++++||.||++|..+.+.|..
T Consensus 234 ~v~~p~~~~~vv~~s~v~~~k~~~a~~~Yn~R~~ec~~Aa~~L~~ 278 (497)
T PLN02521 234 DVQLPAGGTFVIANSLAESNKAVTAATNYNNRVVECRLAAIVLAV 278 (497)
T ss_pred EeecCCCcEEEEEECCCcccccccccccccHHHHHHHHHHHHHHh
Confidence 8889989999999999555 58889999999999888888854
|
|
| >PRK05101 galactokinase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-38 Score=351.17 Aligned_cols=234 Identities=29% Similarity=0.495 Sum_probs=191.9
Q ss_pred HHHHHhccCCCCCceEEEEccccccccccccccCCCeeeccccccceEEEEEEcCCccchhhhhhhhccCCCCCCCCCeE
Q 003222 483 ERKAAAGLFNWEEEIFVARAPGRLDVMGGIADYSGSLVLQMPIREACHVALQKISPSKQRLWKHALARHNDKGQGPMPVL 562 (838)
Q Consensus 483 ~~~~~~~~f~~~~~~~~~~APGRv~L~GeH~Dy~gg~vl~~ai~~~~~v~~~~~~d~~~~l~~~~~~~~~~~~~~~~~~i 562 (838)
-...+...||.++ .++++|||||||+|||+||+||+||++|||+++++.+++++++.+++.
T Consensus 7 ~~~~f~~~fg~~p-~~~~~APgRvnL~GeH~Dy~gg~vL~~AId~~~~v~i~~~~~~~i~v~------------------ 67 (382)
T PRK05101 7 TQSLFAQQFGYPP-THTIQAPGRVNLIGEHTDYNDGFVLPCAIDYQTVISCAKRDDRIVRVI------------------ 67 (382)
T ss_pred HHHHHHHHhCCCC-CeEEECCceEEEeccceeecCCEEEEEEecccEEEEEEECCCCEEEEE------------------
Confidence 4455678899654 578999999999999999999999999999999999999987655443
Q ss_pred EEEecccccCCCCCceeccCCccccCCCCcchhhhhcccCCCCCCChhHHHHHHHHHHHHHhCCCCCCCEEEEEEeCCCC
Q 003222 563 QIVSYGSELSNRGPTFDMDLSDFMDEGKPMSYEKAKKYFDTNPSQKWAAYVAGTILVLMTELGVRFEDSISMLVSSAVPE 642 (838)
Q Consensus 563 ~i~s~~~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~~~~~~w~~y~~g~i~~~~~~~g~~~~~g~~i~i~s~iP~ 642 (838)
+...+ . ....++++. ++. ..+..+|.||+++++..+. ..+... .||++.|.|+||+
T Consensus 68 ---s~~~~--~--~~~~~~~~~------~~~---------~~~~~~w~~yv~~~~~~l~-~~~~~~-~g~~i~i~~~iP~ 123 (382)
T PRK05101 68 ---AADYD--N--QQDEFSLDA------PIV---------PHPEQQWANYVRGVVKHLQ-ERNPDF-GGADLVISGNVPQ 123 (382)
T ss_pred ---ECCCC--C--CceEEecCc------ccc---------cCCCCchHHHHHHHHHHHH-HhCCCC-CCeEEEEeCCCCC
Confidence 32110 0 011123222 110 1234689999999998765 444433 6999999999999
Q ss_pred CCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhhhcCCCCChhhHHHhhcCCCCeEEEEEecCCceeeeeccC
Q 003222 643 GKGVSSSASVEVASMSAIAAAHGLNIHPRDLALLCQKVENHIVGAPCGVMDQMASACGEANKLLAMVCQPAELLGVVEIP 722 (838)
Q Consensus 643 g~GLgSSAA~~va~~~al~~l~~~~l~~~ela~~a~~~E~~~~G~~~G~mDq~a~~~G~~~~~l~~d~~~~~~~~~v~~~ 722 (838)
|+|||||||++||++.|++.+++.++++.+++++|+++|+.++|.|||+|||+++++||.++++++|+++..+ .++++|
T Consensus 124 gaGLgSSAA~~va~~~al~~~~~~~l~~~~la~~a~~~E~~~~G~~~G~~Dq~~s~~G~~~~~~~~d~~~~~~-~~~~~~ 202 (382)
T PRK05101 124 GAGLSSSASLEVAVGQTFQQLYHLPLSGAEIALNGQEAENQFVGCNCGIMDQLISALGKKDHALLIDCRSLET-KAVPMP 202 (382)
T ss_pred CCCcchHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhcCCCCccHHHHHHHcCCCCeEEEEEcCCCce-EEeeCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999998776 678888
Q ss_pred CCeEEEEEeCCCCCcCCCCchhhHHHHH-----hcChHHHhcc
Q 003222 723 SHIRFWGIDSGIRHSVGGADYGSVRAGA-----FMGRKMIKST 760 (838)
Q Consensus 723 ~~~~~vi~~s~~~~~~~~~~y~~~r~~~-----~~g~~~l~~~ 760 (838)
.++.|+|+|||++|++.++.|+.||++| .+|.+.|+++
T Consensus 203 ~~~~~vv~~sg~~~~l~~~~y~~r~~e~~~A~~~l~~~~l~~~ 245 (382)
T PRK05101 203 EGVAVVIINSNVKRGLVDSEYNTRRQQCETAARFFGVKALRDV 245 (382)
T ss_pred CCcEEEEEeCCCCccccccchhHHHHHHHHHHHHhChHhhhcC
Confidence 8899999999999999999999999544 4565555554
|
|
| >PRK00555 galactokinase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-38 Score=351.93 Aligned_cols=214 Identities=28% Similarity=0.393 Sum_probs=179.5
Q ss_pred EEEEccccccccccccccCCCeeeccccccceEEEEEEcCCccchhhhhhhhccCCCCCCCCCeEEEEecccccCCCCCc
Q 003222 498 FVARAPGRLDVMGGIADYSGSLVLQMPIREACHVALQKISPSKQRLWKHALARHNDKGQGPMPVLQIVSYGSELSNRGPT 577 (838)
Q Consensus 498 ~~~~APGRv~L~GeH~Dy~gg~vl~~ai~~~~~v~~~~~~d~~~~l~~~~~~~~~~~~~~~~~~i~i~s~~~~~~~~~~~ 577 (838)
++++|||||||||||+|||||+|+|+||++++++++++++++++++. |...+ ..
T Consensus 3 ~~~~APGRv~LiGEH~dy~~g~vl~~Ai~~~~~v~~~~~~~~~i~i~---------------------s~~~~-----~~ 56 (363)
T PRK00555 3 VRYAAPGRINLIGEHTDYNLGFALPIALPQRTVVTFTPEHTDAITAS---------------------SDRAD-----GS 56 (363)
T ss_pred EEEEcCceEEeecccccCCCCeEEeEEeeccEEEEEEECCCCEEEEE---------------------ECCCC-----Cc
Confidence 56799999999999999999999999999999999999998765543 32110 01
Q ss_pred eeccCCccccCCCCcchhhhhcccCCCCCCChhHHHHHHHHHHHHHhCCCCCCCEEEEEEeCCCCCCCCChHHHHHHHHH
Q 003222 578 FDMDLSDFMDEGKPMSYEKAKKYFDTNPSQKWAAYVAGTILVLMTELGVRFEDSISMLVSSAVPEGKGVSSSASVEVASM 657 (838)
Q Consensus 578 ~~~~l~~~~~~~~p~~~~~~~~~~~~~~~~~w~~y~~g~i~~~~~~~g~~~~~g~~i~i~s~iP~g~GLgSSAA~~va~~ 657 (838)
++++++.. ......|.+|++|++..+. +.|..+ .|+++.|.|+||+|+|||||||++||++
T Consensus 57 ~~~~~~~~-----------------~~~~~~w~~y~~gv~~~l~-~~g~~~-~g~~i~i~s~iP~g~GLgSSAA~~va~~ 117 (363)
T PRK00555 57 ARIPLDTT-----------------PGQVTGWAAYAAGVIWALR-GAGHPV-PGGAMSITSDVEIGSGLSSSAALECAVL 117 (363)
T ss_pred eEEecCCC-----------------CCCCcchHHHHHHHHHHHH-HcCCCC-CCeEEEEecCCCCCCCccHHHHHHHHHH
Confidence 22332210 1123689999999988754 667665 6999999999999999999999999999
Q ss_pred HHHHHHhCCCCCHHHHHHHHHHHHhhhcCCCCChhhHHHhhcCCCCeEEEEEecCCceeeeeccCC---CeEEEEEeCCC
Q 003222 658 SAIAAAHGLNIHPRDLALLCQKVENHIVGAPCGVMDQMASACGEANKLLAMVCQPAELLGVVEIPS---HIRFWGIDSGI 734 (838)
Q Consensus 658 ~al~~l~~~~l~~~ela~~a~~~E~~~~G~~~G~mDq~a~~~G~~~~~l~~d~~~~~~~~~v~~~~---~~~~vi~~s~~ 734 (838)
.|++.++|.++++.+++++|+++|+.++|.|||+|||+++++||.|+++++||++..+ .+++++. .+.|+++||++
T Consensus 118 ~al~~~~~~~~~~~~la~~a~~aE~~~~G~~~G~~Dq~as~~G~~~~~~~~d~~~~~~-~~v~~~~~~~~~~lvv~~s~~ 196 (363)
T PRK00555 118 GAVGAATGTRIDRLEQARLAQRAENEYVGAPTGLLDQLAALFGAPKTALLIDFRDLTV-RPVAFDPDAAGVVLLLMDSRA 196 (363)
T ss_pred HHHHHHhCCCCCHHHHHHHHHHHHHhhCCCCCChhHHHHHHhCCCCeEEEEEcCCCcE-EEeccCCCcCceEEEEEcCCC
Confidence 9999999999999999999999999999999999999999999999999999988665 6777753 36799999999
Q ss_pred CCcCCCCchhhHHHHHhcChHHH
Q 003222 735 RHSVGGADYGSVRAGAFMGRKMI 757 (838)
Q Consensus 735 ~~~~~~~~y~~~r~~~~~g~~~l 757 (838)
+|.+++++||.||.++....+.+
T Consensus 197 ~~~~~~~~y~~rr~~~~~~~~~~ 219 (363)
T PRK00555 197 RHRHAGGEYAARRASCERAAADL 219 (363)
T ss_pred cccccchhhHHHHHHHHHHHHHh
Confidence 99999999999998776554433
|
|
| >TIGR00131 gal_kin galactokinase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-37 Score=349.55 Aligned_cols=232 Identities=26% Similarity=0.419 Sum_probs=191.6
Q ss_pred HHHhccCCCCCceEEEEccccccccccccccCCCeeeccccccceEEEEEEcCCccchhhhhhhhccCCCCCCCCCeEEE
Q 003222 485 KAAAGLFNWEEEIFVARAPGRLDVMGGIADYSGSLVLQMPIREACHVALQKISPSKQRLWKHALARHNDKGQGPMPVLQI 564 (838)
Q Consensus 485 ~~~~~~f~~~~~~~~~~APGRv~L~GeH~Dy~gg~vl~~ai~~~~~v~~~~~~d~~~~l~~~~~~~~~~~~~~~~~~i~i 564 (838)
..+...||.++ .++++|||||+|+|||+||+||+||++||++++++.+++++++++++
T Consensus 6 ~~f~~~fg~~p-~~~~~APgrv~L~GeH~dy~g~~vl~~AI~~~~~v~~~~~~~~~i~i--------------------- 63 (386)
T TIGR00131 6 KIFASAFGAKP-DFTARAPGRVNLIGEHTDYNDGSVLPCAIDFGTLCAVAVRDDKNVRI--------------------- 63 (386)
T ss_pred HHHHHHHCCCC-CEEEECCcceEeeccceeeCCceEEeeEeeccEEEEEEECCCCeEEE---------------------
Confidence 45667889754 57899999999999999999999999999999999999998765443
Q ss_pred EecccccCCCCCceeccCCccccCCCCcchhhhhcccCCCCCCChhHHHHHHHHHHHHHhCCCCCCCEEEEEEeCCCCCC
Q 003222 565 VSYGSELSNRGPTFDMDLSDFMDEGKPMSYEKAKKYFDTNPSQKWAAYVAGTILVLMTELGVRFEDSISMLVSSAVPEGK 644 (838)
Q Consensus 565 ~s~~~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~~~~~~w~~y~~g~i~~~~~~~g~~~~~g~~i~i~s~iP~g~ 644 (838)
.+.+.+ .....+++++. .. ......|.+|+++++..+++ .+.....||++.|.|+||+|+
T Consensus 64 ~~~~~~--~~~~~~~~~~~--------~~---------~~~~~~w~~y~~~~~~~~~~-~~~~~~~g~~i~i~s~iP~gs 123 (386)
T TIGR00131 64 YLANAD--NKFAERSLDLP--------LD---------GSEVSDWANYFKGVLHVAQE-RFNSFPLGADIVCSGNVPTGS 123 (386)
T ss_pred EECCCC--CcceEEECCCC--------CC---------CCCCCCcHhHHHHHHHHHHH-hcCCCCCceEEEEECCCCCCC
Confidence 332110 00001222211 10 11236899999999988764 444334699999999999999
Q ss_pred CCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhhhcCCCCChhhHHHhhcCCCCeEEEEEecCCceeeeeccCC-
Q 003222 645 GVSSSASVEVASMSAIAAAHGLNIHPRDLALLCQKVENHIVGAPCGVMDQMASACGEANKLLAMVCQPAELLGVVEIPS- 723 (838)
Q Consensus 645 GLgSSAA~~va~~~al~~l~~~~l~~~ela~~a~~~E~~~~G~~~G~mDq~a~~~G~~~~~l~~d~~~~~~~~~v~~~~- 723 (838)
|||||||++||++.|++.+++.++++++++++|+.+|+.++|.|||+|||+++++||.+++++++|++.++ .++++|.
T Consensus 124 GLgSSAA~~vA~~~al~~~~~~~~~~~~l~~~a~~~E~~~~G~~~g~~Dq~~s~~G~~~~~l~~~~~~~~~-~~~~~~~~ 202 (386)
T TIGR00131 124 GLSSSAAFECAVGAVLQNMGHLPLDSKQILLRIQVAENHFVGVNCGIMDQAASVLGKEDHALLVECRSLKA-TPFKFPQL 202 (386)
T ss_pred CcchHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCccCCCcchHHHHHHHhccCCcEEEEEcCCCce-eeecCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999998766 6788886
Q ss_pred CeEEEEEeCCCCCcCCCCchhhHHHHHhcChHHHhc
Q 003222 724 HIRFWGIDSGIRHSVGGADYGSVRAGAFMGRKMIKS 759 (838)
Q Consensus 724 ~~~~vi~~s~~~~~~~~~~y~~~r~~~~~g~~~l~~ 759 (838)
++.|+|+|||++|++.++.|+.||++|..+.+.|..
T Consensus 203 ~~~lvv~~s~~~~~t~~~~y~~r~~e~~~a~~~l~~ 238 (386)
T TIGR00131 203 GIAFVIANTNVKRTLAPSNYNTRRQECTTAANFLAA 238 (386)
T ss_pred CeEEEEEeCCCccccccchhHHHHHHHHHHHHHhcc
Confidence 899999999999999999999999888777776643
|
The galactokinases found by this model are divided into two sets. Prokaryotic forms are generally shorter. The eukaryotic forms are longer because of additional central regions and in some cases are known to be bifunctional, with regulatory activities that are independent of galactokinase activity. |
| >PF13528 Glyco_trans_1_3: Glycosyl transferase family 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-32 Score=298.04 Aligned_cols=311 Identities=27% Similarity=0.445 Sum_probs=214.0
Q ss_pred EEEEEeecCCCcccHHHHHHHHHHHHHCCCeEEEEeCCCCc-ccccccCCCceeeeeeccCCCcccccccccChHHHHHH
Q 003222 16 LVFAYYVTGHGFGHATRVVEVVRNLISAGHDVHVVTGAPDF-VFTSEIQSPRLFIRKVLLDCGAVQADALTVDRLASLEK 94 (838)
Q Consensus 16 ~~Il~~v~g~G~GHv~r~laLA~~L~~~Gh~V~~v~~~~~~-~~~~~i~~~~~~~~~~~~~~g~~~~~~~~~~~~~~l~~ 94 (838)
|||+|+++|+|+||++||++||++| +||+|+|++..... ++... +.+... .+++..... ...+..+++..
T Consensus 1 MkIl~~v~~~G~GH~~R~~~la~~L--rg~~v~~~~~~~~~~~~~~~-----~~~~~~-~~~~~~~~~-~~~~~~~~~~~ 71 (318)
T PF13528_consen 1 MKILFYVQGHGLGHASRCLALARAL--RGHEVTFITSGPAPEFLKPR-----FPVREI-PGLGPIQEN-GRLDRWKTVRN 71 (318)
T ss_pred CEEEEEeCCCCcCHHHHHHHHHHHH--ccCceEEEEcCCcHHHhccc-----cCEEEc-cCceEeccC-CccchHHHHHH
Confidence 6899999999999999999999999 59999999887532 11111 112221 222322221 24455555555
Q ss_pred HHHHhhccHHHHHHHHHHHHhcCCCcEEEECCCchHHHHHHHhCCcEEEEecCchhHHHHhhhhhcccchHHHHHH-HHh
Q 003222 95 YSETAVAPRKSILKDEVEWLNSIKADLVVSDVVPVACRAAADAGIRSVCVTNFSWDFIYAEYVMAAGHHHRSIVWQ-IAE 173 (838)
Q Consensus 95 ~~~~~~~~~~~~l~~~~~~L~~~kPDlVVsD~~~~~~~aA~~lgIP~V~is~~~~~~i~~~~~~~~~~~~~~i~~~-l~~ 173 (838)
...+.. .+...+.++.+++++++||+||+|+++.+..+|+..|||++.+++..|...+....... ..+.....+ ...
T Consensus 72 ~~~~~~-~~~~~~~~~~~~l~~~~pDlVIsD~~~~~~~aa~~~giP~i~i~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 149 (318)
T PF13528_consen 72 NIRWLA-RLARRIRREIRWLREFRPDLVISDFYPLAALAARRAGIPVIVISNQYWFLHPNFWLPWD-QDFGRLIERYIDR 149 (318)
T ss_pred HHHhhH-HHHHHHHHHHHHHHhcCCCEEEEcChHHHHHHHHhcCCCEEEEEehHHcccccCCcchh-hhHHHHHHHhhhh
Confidence 443321 34456677788999999999999999999999999999999999877653211111100 111122222 222
Q ss_pred h-ccccceEEecCCCCCCCCCCceeecCcccccCCcChHHHHHHhCCCCCCcEEEEEcCCCCchhhhHHhhCC-CCcEEE
Q 003222 174 D-YSHCEFLIRLPGYCPMPAFRDVIDVPLVVRRLHKSRKEVRKELGIEDDVKLLILNFGGQPAGWKLKEEYLP-SGWKCL 251 (838)
Q Consensus 174 ~-y~~~d~ll~~~~~~~~p~~~~v~~ip~~~~~~~~~~~~~r~~l~~~~~~~~Vlvs~Gs~~~~~~ll~~l~~-~~~~~v 251 (838)
. +..++..+..++..+.+...++..+|++.++ +.++.. +.+.+.|++++|+.+.+ ++.+.+.. +++.++
T Consensus 150 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~p~~~~------~~~~~~--~~~~~~iLv~~gg~~~~-~~~~~l~~~~~~~~~ 220 (318)
T PF13528_consen 150 YHFPPADRRLALSFYPPLPPFFRVPFVGPIIRP------EIRELP--PEDEPKILVYFGGGGPG-DLIEALKALPDYQFI 220 (318)
T ss_pred ccCCcccceecCCccccccccccccccCchhcc------cccccC--CCCCCEEEEEeCCCcHH-HHHHHHHhCCCCeEE
Confidence 2 4445555544444222222233344544332 111111 23567899999998876 55554433 457777
Q ss_pred EeCCCCC-CCCCCeEECCCC-CCHHHHHhhcCEEEecCChhhHHHHHHcCCcEEEEeCCCCCChHHHHHHHHHcCcEEEE
Q 003222 252 VCGASDS-QLPPNFIKLPKD-AYTPDFMAASDCMLGKIGYGTVSEALAYKLPFVFVRRDYFNEEPFLRNMLEFYQGGVEM 329 (838)
Q Consensus 252 v~G~~~~-~lp~nv~~~~~~-~~~pdlLa~adl~It~gG~~Tv~Eal~~GvP~l~iP~~~~~EQ~~Na~~l~~~G~g~~l 329 (838)
++|.... ..++|+++.+|. .+++++|+.||++||++|++|++|++++|+|+|++|++.+.||..||+++++.|+|+.+
T Consensus 221 v~g~~~~~~~~~ni~~~~~~~~~~~~~m~~ad~vIs~~G~~t~~Ea~~~g~P~l~ip~~~~~EQ~~~a~~l~~~G~~~~~ 300 (318)
T PF13528_consen 221 VFGPNAADPRPGNIHVRPFSTPDFAELMAAADLVISKGGYTTISEALALGKPALVIPRPGQDEQEYNARKLEELGLGIVL 300 (318)
T ss_pred EEcCCcccccCCCEEEeecChHHHHHHHHhCCEEEECCCHHHHHHHHHcCCCEEEEeCCCCchHHHHHHHHHHCCCeEEc
Confidence 7787652 257899999987 77889999999999999999999999999999999988789999999999999999999
Q ss_pred ecCCCChhhHHHHHHHH
Q 003222 330 IRRDLLTGHWKPYLERA 346 (838)
Q Consensus 330 ~~~~~~~~~l~~~l~~l 346 (838)
+.++++++.++++|+++
T Consensus 301 ~~~~~~~~~l~~~l~~~ 317 (318)
T PF13528_consen 301 SQEDLTPERLAEFLERL 317 (318)
T ss_pred ccccCCHHHHHHHHhcC
Confidence 99999989998888764
|
|
| >PRK03817 galactokinase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.4e-31 Score=292.94 Aligned_cols=210 Identities=30% Similarity=0.504 Sum_probs=174.6
Q ss_pred EEEccccccccccccccCCCeeeccccccceEEEEEEcCCccchhhhhhhhccCCCCCCCCCeEEEEecccccCCCCCce
Q 003222 499 VARAPGRLDVMGGIADYSGSLVLQMPIREACHVALQKISPSKQRLWKHALARHNDKGQGPMPVLQIVSYGSELSNRGPTF 578 (838)
Q Consensus 499 ~~~APGRv~L~GeH~Dy~gg~vl~~ai~~~~~v~~~~~~d~~~~l~~~~~~~~~~~~~~~~~~i~i~s~~~~~~~~~~~~ 578 (838)
.++|||||+|+|||+||+||+||++||++++++.+++++ . +.|.+.+.+ ..+
T Consensus 2 ~~~APgrv~L~Geh~d~~~g~~l~~aI~~~~~v~~~~~~--~---------------------~~i~~~~~~-----~~~ 53 (351)
T PRK03817 2 KVKSPGRVNLIGEHTDYNDGYVLPFAINLYTFLEIEKSE--K---------------------FIFYSENFN-----EEK 53 (351)
T ss_pred EEEeeeeEEEeccceeeCCCeEEEEEecCcEEEEEEeCC--e---------------------EEEEECCCC-----CcE
Confidence 478999999999999999999999999999999998752 2 233332110 012
Q ss_pred eccCCccccCCCCcchhhhhcccCCCCCCChhHHHHHHHHHHHHHhCCCCCCCEEEEEEeCCCCCCCCChHHHHHHHHHH
Q 003222 579 DMDLSDFMDEGKPMSYEKAKKYFDTNPSQKWAAYVAGTILVLMTELGVRFEDSISMLVSSAVPEGKGVSSSASVEVASMS 658 (838)
Q Consensus 579 ~~~l~~~~~~~~p~~~~~~~~~~~~~~~~~w~~y~~g~i~~~~~~~g~~~~~g~~i~i~s~iP~g~GLgSSAA~~va~~~ 658 (838)
+++++++ ....+|.+|+++++..+. +.+... .||++.+.|+||.|+|||||||++||++.
T Consensus 54 ~~~~~~~------------------~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~i~i~s~iP~~~GLgSSaa~~va~~~ 113 (351)
T PRK03817 54 TFELDKL------------------EKLNSWADYIKGVIWVLE-KRGYEV-GGVKGKVSSNLPIGAGLSSSASLEVAVAY 113 (351)
T ss_pred EEeCCcc------------------CCCCchHHHHHHHHHHHH-HcCCCC-CCeEEEEeCCCCCCCCcCcHHHHHHHHHH
Confidence 2232221 123689999999987654 566654 69999999999999999999999999999
Q ss_pred HHHHHhCCCCCHHHHHHHHHHHHhhhcCCCCChhhHHHhhcCCCCeEEEEEecCCceeeeeccCCCeEEEEEeCCCCCcC
Q 003222 659 AIAAAHGLNIHPRDLALLCQKVENHIVGAPCGVMDQMASACGEANKLLAMVCQPAELLGVVEIPSHIRFWGIDSGIRHSV 738 (838)
Q Consensus 659 al~~l~~~~l~~~ela~~a~~~E~~~~G~~~G~mDq~a~~~G~~~~~l~~d~~~~~~~~~v~~~~~~~~vi~~s~~~~~~ 738 (838)
|++.++|.++++.+++++|+++|+.++|.+||+|||+++++|+.++++++++++..+ .++++|.++.|++++||.+|++
T Consensus 114 al~~~~~~~~~~~~l~~~a~~~E~~~~g~~~g~~D~~~~~~g~~~~~~~~~~~~~~~-~~~~~~~~~~~vv~~sg~~~~~ 192 (351)
T PRK03817 114 ALNEAYNLNLSKLELALLAREAENEFVGVPCGIMDQFAVAFGKKDHAIFLDTMTLEY-EYVPFPEDYEILVFDTGVKREL 192 (351)
T ss_pred HHHHHhCCCCCHHHHHHHHHHhcccccCCCCcCchhhheeeccCCEEEEEecCCCce-EEEecCCCcEEEEEeCCCcccc
Confidence 999999999999999999999999999999999999999999999999999988655 5778888999999999999998
Q ss_pred CCCchhhHHHHHhcChHHH
Q 003222 739 GGADYGSVRAGAFMGRKMI 757 (838)
Q Consensus 739 ~~~~y~~~r~~~~~g~~~l 757 (838)
.+.+|+.||..+....+.|
T Consensus 193 ~~~~~~~~~~~~~~~~~~l 211 (351)
T PRK03817 193 ASSEYNERRQECEEALKIL 211 (351)
T ss_pred ccchhHHHHHHHHHHHHHh
Confidence 8889999987766655554
|
|
| >PHA03392 egt ecdysteroid UDP-glucosyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.6e-28 Score=284.02 Aligned_cols=371 Identities=12% Similarity=0.068 Sum_probs=230.8
Q ss_pred EEEEEeecCCCcccHHHHHHHHHHHHHCCCeEEEEeCCCCcccccccCCCceeeeeeccCCCcc----cc-cccc-----
Q 003222 16 LVFAYYVTGHGFGHATRVVEVVRNLISAGHDVHVVTGAPDFVFTSEIQSPRLFIRKVLLDCGAV----QA-DALT----- 85 (838)
Q Consensus 16 ~~Il~~v~g~G~GHv~r~laLA~~L~~~Gh~V~~v~~~~~~~~~~~i~~~~~~~~~~~~~~g~~----~~-~~~~----- 85 (838)
.+||.+++..|.+|..-+..++++|++|||+||++++.+....... ....++........... .. ....
T Consensus 21 ~kIl~~~P~~~~SH~~~~~~l~~~La~rGH~VTvi~p~~~~~~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (507)
T PHA03392 21 ARILAVFPTPAYSHHSVFKVYVEALAERGHNVTVIKPTLRVYYASH-LCGNITEIDASLSVEYFKKLVKSSAVFRKRGVV 99 (507)
T ss_pred ccEEEEcCCCCCcHHHHHHHHHHHHHHcCCeEEEEecccccccccC-CCCCEEEEEcCCChHHHHHHHhhhhHHHhhhhh
Confidence 5687777888999999999999999999999999977532211110 11122211110000000 00 0000
Q ss_pred cChHHHHHHHHHHhhccHHHHHH--HHHHHHh--cCCCcEEEECC-CchHHHHHHHh-CCcEEEEecCc---hh-HHHH-
Q 003222 86 VDRLASLEKYSETAVAPRKSILK--DEVEWLN--SIKADLVVSDV-VPVACRAAADA-GIRSVCVTNFS---WD-FIYA- 154 (838)
Q Consensus 86 ~~~~~~l~~~~~~~~~~~~~~l~--~~~~~L~--~~kPDlVVsD~-~~~~~~aA~~l-gIP~V~is~~~---~~-~i~~- 154 (838)
.+...............+...+. +..++|+ +.++|+||+|. ..|++.+|+.+ ++|.|.++... |. ....
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~~~~kFDlvi~e~~~~c~~~la~~~~~~p~i~~ss~~~~~~~~~~~gg 179 (507)
T PHA03392 100 ADSSTVTADNYMGLVRMISDQFDLPNVKNLIANKNNKFDLLVTEAFLDYPLVFSHLFGDAPVIQISSGYGLAENFETMGA 179 (507)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHCCHHHHHHHhcCCCceeEEEecccchhHHHHHHHhCCCCEEEEcCCCCchhHHHhhcc
Confidence 00000000000110111222232 2367787 78899999995 77888889999 99988875422 11 0000
Q ss_pred -----hhhhhcccc-------hHHHH-------------------HHHHhhc-cc-----------cceEE-ecCC--CC
Q 003222 155 -----EYVMAAGHH-------HRSIV-------------------WQIAEDY-SH-----------CEFLI-RLPG--YC 188 (838)
Q Consensus 155 -----~~~~~~~~~-------~~~i~-------------------~~l~~~y-~~-----------~d~ll-~~~~--~~ 188 (838)
.|+|..... .+++. +++.+.+ .. .+.++ ...+ ..
T Consensus 180 ~p~~~syvP~~~~~~~~~Msf~~R~~N~~~~~~~~~~~~~~~~~~~~l~~~~f~~~~~~~~~l~~~~~l~lvns~~~~d~ 259 (507)
T PHA03392 180 VSRHPVYYPNLWRSKFGNLNVWETINEIYTELRLYNEFSLLADEQNKLLKQQFGPDTPTIRELRNRVQLLFVNVHPVFDN 259 (507)
T ss_pred CCCCCeeeCCcccCCCCCCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHcCCCCCCHHHHHhCCcEEEEecCccccC
Confidence 111110000 01110 0111111 11 01111 1111 22
Q ss_pred CCCCCCceeecCcccc---cCCcChHHHHHHhCCCCCCcEEEEEcCCCCc----hhh----hHHhhCCCCcEEEEe-CC-
Q 003222 189 PMPAFRDVIDVPLVVR---RLHKSRKEVRKELGIEDDVKLLILNFGGQPA----GWK----LKEEYLPSGWKCLVC-GA- 255 (838)
Q Consensus 189 ~~p~~~~v~~ip~~~~---~~~~~~~~~r~~l~~~~~~~~Vlvs~Gs~~~----~~~----ll~~l~~~~~~~vv~-G~- 255 (838)
+.|..++++.+|++.. ..++.++++.++++.. ++++||+||||... +.+ +++++...+..+++. +.
T Consensus 260 ~rp~~p~v~~vGgi~~~~~~~~~l~~~l~~fl~~~-~~g~V~vS~GS~~~~~~~~~~~~~~~l~a~~~l~~~viw~~~~~ 338 (507)
T PHA03392 260 NRPVPPSVQYLGGLHLHKKPPQPLDDYLEEFLNNS-TNGVVYVSFGSSIDTNDMDNEFLQMLLRTFKKLPYNVLWKYDGE 338 (507)
T ss_pred CCCCCCCeeeecccccCCCCCCCCCHHHHHHHhcC-CCcEEEEECCCCCcCCCCCHHHHHHHHHHHHhCCCeEEEEECCC
Confidence 4455567888888644 2245678898888754 45799999999753 222 333443334555443 32
Q ss_pred CCC-CCCCCeEECCCCCCHH--HHHhh--cCEEEecCChhhHHHHHHcCCcEEEEeCCCCCChHHHHHHHHHcCcEEEEe
Q 003222 256 SDS-QLPPNFIKLPKDAYTP--DFMAA--SDCMLGKIGYGTVSEALAYKLPFVFVRRDYFNEEPFLRNMLEFYQGGVEMI 330 (838)
Q Consensus 256 ~~~-~lp~nv~~~~~~~~~p--dlLa~--adl~It~gG~~Tv~Eal~~GvP~l~iP~~~~~EQ~~Na~~l~~~G~g~~l~ 330 (838)
..+ .+|+||.+. +|+| ++|++ +++||||||+||++||+++|||+|++| .+.||+.||++++++|+|+.++
T Consensus 339 ~~~~~~p~Nv~i~---~w~Pq~~lL~hp~v~~fItHGG~~s~~Eal~~GvP~v~iP--~~~DQ~~Na~rv~~~G~G~~l~ 413 (507)
T PHA03392 339 VEAINLPANVLTQ---KWFPQRAVLKHKNVKAFVTQGGVQSTDEAIDALVPMVGLP--MMGDQFYNTNKYVELGIGRALD 413 (507)
T ss_pred cCcccCCCceEEe---cCCCHHHHhcCCCCCEEEecCCcccHHHHHHcCCCEEECC--CCccHHHHHHHHHHcCcEEEec
Confidence 233 578999985 5677 89965 999999999999999999999999999 7899999999999999999999
Q ss_pred cCCCChhhHHHHHHHHhhCCCCcc-----------CCCCHHHHHHHHHHHHhccCCCccCCCc-hhHhhHHHHHhccccc
Q 003222 331 RRDLLTGHWKPYLERAISLKPCYE-----------GGINGGEVAAHILQETAIGKNYASDKLS-GARRLRDAIIFGYELQ 398 (838)
Q Consensus 331 ~~~~~~~~l~~~l~~ll~~~~~~~-----------~~~~g~~~~a~~i~~~~~~~~~~~~r~~-ga~~Lr~a~~~~~~~q 398 (838)
..+++++.+.++|+++++++ .|+ .++..+.+.|.+|.|+ +.||+ |+.|||
T Consensus 414 ~~~~t~~~l~~ai~~vl~~~-~y~~~a~~ls~~~~~~p~~~~~~av~~iE~-------v~r~~~g~~~lr---------- 475 (507)
T PHA03392 414 TVTVSAAQLVLAIVDVIENP-KYRKNLKELRHLIRHQPMTPLHKAIWYTEH-------VIRNKHGNTSLK---------- 475 (507)
T ss_pred cCCcCHHHHHHHHHHHhCCH-HHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-------HHhCCCCccccc----------
Confidence 99999999999999999876 332 4555444445566666 56888 999999
Q ss_pred cCCCccccccccccccc
Q 003222 399 RVPGRDVSIPEWYQTAE 415 (838)
Q Consensus 399 ~~~~~~~~~p~~~~~~~ 415 (838)
+++.+++ |++|+.
T Consensus 476 -~~~~~l~---~~qy~~ 488 (507)
T PHA03392 476 -TKAANVS---YSDYFM 488 (507)
T ss_pred -ccccCCC---HHHHHH
Confidence 9999999 888886
|
|
| >TIGR00549 mevalon_kin mevalonate kinase | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.1e-27 Score=257.86 Aligned_cols=180 Identities=26% Similarity=0.313 Sum_probs=142.7
Q ss_pred ccccccccccccccCCCeeeccccccceEEEEEEcCCccchhhhhhhhccCCCCCCCCCeEEEEecccccCCCCCceecc
Q 003222 502 APGRLDVMGGIADYSGSLVLQMPIREACHVALQKISPSKQRLWKHALARHNDKGQGPMPVLQIVSYGSELSNRGPTFDMD 581 (838)
Q Consensus 502 APGRv~L~GeH~Dy~gg~vl~~ai~~~~~v~~~~~~d~~~~l~~~~~~~~~~~~~~~~~~i~i~s~~~~~~~~~~~~~~~ 581 (838)
|||||+|+|||+||+||+||++||++++++.+.+++++ + .|.+.. ++.+
T Consensus 1 aPgkv~L~GEH~v~~g~~al~~aI~~~~~~~~~~~~~~-~---------------------~i~~~~---------~~~~ 49 (273)
T TIGR00549 1 APGKIILFGEHAVVYGEPAIAAPIPLRTTVTVIESSDG-S---------------------FIESDL---------GRGS 49 (273)
T ss_pred CCceEEEEecChhccCCCeeEEEecccEEEEEEEcCCC-c---------------------eEeccc---------cCCc
Confidence 79999999999999999999999999999999987653 2 222210 1011
Q ss_pred CCccccCCCCcchhhhhcccCCCCCCChhHHHHHHHHHHHHHhCCCCCCCEEEEEEeCCCCCCCCChHHHHHHHHHHHHH
Q 003222 582 LSDFMDEGKPMSYEKAKKYFDTNPSQKWAAYVAGTILVLMTELGVRFEDSISMLVSSAVPEGKGVSSSASVEVASMSAIA 661 (838)
Q Consensus 582 l~~~~~~~~p~~~~~~~~~~~~~~~~~w~~y~~g~i~~~~~~~g~~~~~g~~i~i~s~iP~g~GLgSSAA~~va~~~al~ 661 (838)
+... ......|.+|+++++..+. ..+ ..++++.+.|+||.|+|||||||+++|++.|++
T Consensus 50 ~~~~-----------------~~~~~~~~~~v~~~l~~~~-~~~---~~~~~i~i~s~iP~g~GLGSSaa~~va~~~al~ 108 (273)
T TIGR00549 50 LDDA-----------------PQELDGLVSYIAEALSYFS-ELN---PPPLEIEIDSEIPPGRGLGSSAAVAVALIRALA 108 (273)
T ss_pred HhHh-----------------hHHHHHHHHHHHHHHHHhh-ccC---CCCEEEEEecCCCCCCCccHHHHHHHHHHHHHH
Confidence 1100 0123579999999988664 222 135999999999999999999999999999999
Q ss_pred HHhCCCCCHHHHHHHHHHHHhhhcCCCCChhhHHHhhcCCCCeEEEEEecCCceeeeeccCCCeEEEEEeCCCCCcCC
Q 003222 662 AAHGLNIHPRDLALLCQKVENHIVGAPCGVMDQMASACGEANKLLAMVCQPAELLGVVEIPSHIRFWGIDSGIRHSVG 739 (838)
Q Consensus 662 ~l~~~~l~~~ela~~a~~~E~~~~G~~~G~mDq~a~~~G~~~~~l~~d~~~~~~~~~v~~~~~~~~vi~~s~~~~~~~ 739 (838)
.+++.++++.+++++|+.+|+.++|.+|| +||+++++||. ++++++... ..+..+.+..+++++|++++++.
T Consensus 109 ~~~~~~~~~~~l~~~a~~~E~~~~G~~sG-~D~~~~~~Gg~---~~~~~~~~~--~~~~~~~~~~lvl~~tg~~~~T~ 180 (273)
T TIGR00549 109 DYFGSELSKEELAKLANEAEKIAHGKPSG-IDTATSTYGGP---VYFEKGEGE--FTKLISLDGYFVIADTGVSGSTK 180 (273)
T ss_pred HHhCCCCCHHHHHHHHHHHHHHhCCCCch-HhHHHHhcCCe---EEEEcCCCc--eeeccCCCeEEEEEECCCCCcHH
Confidence 99999999999999999999999999999 59999999984 566655432 23334456889999999998763
|
Paracoccus exhibits two genes within the phosphomevalonate/mevalonate kinase family, one of which falls between trusted and noise cutoffs of this model. The degree of divergence is high, but if the trees created from this model are correct, the proper names of these genes have been swapped. |
| >PF00201 UDPGT: UDP-glucoronosyl and UDP-glucosyl transferase; InterPro: IPR002213 UDP glycosyltransferases (UGT) are a superfamily of enzymes that catalyzes the addition of the glycosyl group from a UTP-sugar to a small hydrophobic molecule | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.2e-29 Score=294.14 Aligned_cols=196 Identities=19% Similarity=0.232 Sum_probs=112.0
Q ss_pred CceeecCcccc-cCCcChHHHHHHhCCCCCCcEEEEEcCCCCc--hhh----hHHhhCCCCcEEEEe-CCCC-CCCCCCe
Q 003222 194 RDVIDVPLVVR-RLHKSRKEVRKELGIEDDVKLLILNFGGQPA--GWK----LKEEYLPSGWKCLVC-GASD-SQLPPNF 264 (838)
Q Consensus 194 ~~v~~ip~~~~-~~~~~~~~~r~~l~~~~~~~~Vlvs~Gs~~~--~~~----ll~~l~~~~~~~vv~-G~~~-~~lp~nv 264 (838)
+++..+|++.. ++++.+++++++++.+.++++|||||||... +.+ +.+.+...+..+++. .... ..+|+|+
T Consensus 246 p~v~~vGgl~~~~~~~l~~~~~~~~~~~~~~~vv~vsfGs~~~~~~~~~~~~~~~~~~~~~~~~iW~~~~~~~~~l~~n~ 325 (500)
T PF00201_consen 246 PNVVEVGGLHIKPAKPLPEELWNFLDSSGKKGVVYVSFGSIVSSMPEEKLKEIAEAFENLPQRFIWKYEGEPPENLPKNV 325 (500)
T ss_dssp CTSTTGCGC-S----TCHHHHHHHTSTTTTTEEEEEE-TSSSTT-HHHHHHHHHHHHHCSTTEEEEEETCSHGCHHHTTE
T ss_pred hcccccCccccccccccccccchhhhccCCCCEEEEecCcccchhHHHHHHHHHHHHhhCCCcccccccccccccccceE
Confidence 45666777533 4667888999998864578999999999864 222 333443433455543 3322 2378999
Q ss_pred EECCCCCCHH--HHHhh--cCEEEecCChhhHHHHHHcCCcEEEEeCCCCCChHHHHHHHHHcCcEEEEecCCCChhhHH
Q 003222 265 IKLPKDAYTP--DFMAA--SDCMLGKIGYGTVSEALAYKLPFVFVRRDYFNEEPFLRNMLEFYQGGVEMIRRDLLTGHWK 340 (838)
Q Consensus 265 ~~~~~~~~~p--dlLa~--adl~It~gG~~Tv~Eal~~GvP~l~iP~~~~~EQ~~Na~~l~~~G~g~~l~~~~~~~~~l~ 340 (838)
++. +|+| ++|+| +++||||||+||++||+++|||||++| .++||+.||+++++.|+|+.++..+++.+.+.
T Consensus 326 ~~~---~W~PQ~~lL~hp~v~~fitHgG~~s~~Ea~~~gvP~l~~P--~~~DQ~~na~~~~~~G~g~~l~~~~~~~~~l~ 400 (500)
T PF00201_consen 326 LIV---KWLPQNDLLAHPRVKLFITHGGLNSTQEALYHGVPMLGIP--LFGDQPRNAARVEEKGVGVVLDKNDLTEEELR 400 (500)
T ss_dssp EEE---SS--HHHHHTSTTEEEEEES--HHHHHHHHHCT--EEE-G--CSTTHHHHHHHHHHTTSEEEEGGGC-SHHHHH
T ss_pred EEe---ccccchhhhhcccceeeeeccccchhhhhhhccCCccCCC--CcccCCccceEEEEEeeEEEEEecCCcHHHHH
Confidence 874 6888 89975 899999999999999999999999999 89999999999999999999999999999999
Q ss_pred HHHHHHhhCCCC----------ccCCCCHHHHHHHHHHHHhccCCCccCCCchhHhhHHHHHhccccccCCCcccccccc
Q 003222 341 PYLERAISLKPC----------YEGGINGGEVAAHILQETAIGKNYASDKLSGARRLRDAIIFGYELQRVPGRDVSIPEW 410 (838)
Q Consensus 341 ~~l~~ll~~~~~----------~~~~~~g~~~~a~~i~~~~~~~~~~~~r~~ga~~Lr~a~~~~~~~q~~~~~~~~~p~~ 410 (838)
++|+++++++.. +++++..+.+.|.+|.|+ +.||+|++||| +++.+++ |
T Consensus 401 ~ai~~vl~~~~y~~~a~~ls~~~~~~p~~p~~~~~~~ie~-------v~~~~~~~~l~-----------~~~~~l~---~ 459 (500)
T PF00201_consen 401 AAIREVLENPSYKENAKRLSSLFRDRPISPLERAVWWIEY-------VARHGGAPHLR-----------SPARDLS---F 459 (500)
T ss_dssp HHHHHHHHSHHHHHHHHHHHHTTT--------------------------------------------------------
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHH-------HHhcCCCcccC-----------ChhhcCC---H
Confidence 999999988731 226888999999999999 78999999999 9999999 9
Q ss_pred ccccc
Q 003222 411 YQTAE 415 (838)
Q Consensus 411 ~~~~~ 415 (838)
|||+.
T Consensus 460 ~~~~~ 464 (500)
T PF00201_consen 460 YQYYL 464 (500)
T ss_dssp -----
T ss_pred HHHHH
Confidence 99987
|
This family currently consist of: Mammalian UDP-glucuronosyl transferases (2.4.1.17 from EC) (UDPGT) []. A large family of membrane-bound microsomal enzymes which catalyze the transfer of glucuronic acid to a wide variety of exogenous and endogenous lipophilic substrates. These enzymes are of major importance in the detoxification and subsequent elimination of xenobiotics such as drugs and carcinogens. A large number of putative UDPGT from Caenorhabditis elegans. Mammalian 2-hydroxyacylsphingosine 1-beta-galactosyltransferase [] (2.4.1.45 from EC) (also known as UDP-galactose-ceramide galactosyltransferase). This enzyme catalyzes the transfer of galactose to ceramide, a key enzymatic step in the biosynthesis of galactocerebrosides, which are abundant sphingolipids of the myelin membrane of the central nervous system and peripheral nervous system. Plants flavonol O(3)-glucosyltransferase (2.4.1.91 from EC). An enzyme [] that catalyzes the transfer of glucose from UDP-glucose to a flavanol. This reaction is essential and one of the last steps in anthocyanin pigment biosynthesis. Baculoviruses ecdysteroid UDP-glucosyltransferase (2.4.1 from EC) [] (egt). This enzyme catalyzes the transfer of glucose from UDP-glucose to ectysteroids which are insect molting hormones. The expression of egt in the insect host interferes with the normal insect development by blocking the molting process. Prokaryotic zeaxanthin glucosyltransferase (2.4.1 from EC) (gene crtX), an enzyme involved in carotenoid biosynthesis and that catalyses the glycosylation reaction which converts zeaxanthin to zeaxanthin-beta-diglucoside. Streptomyces macrolide glycosyltransferases (2.4.1 from EC) []. These enzymes specifically inactivates macrolide anitibiotics via 2'-O-glycosylation using UDP-glucose. These enzymes share a conserved domain of about 50 amino acid residues located in their C-terminal section.; GO: 0016758 transferase activity, transferring hexosyl groups, 0008152 metabolic process; PDB: 3HBJ_A 3HBF_A 2PQ6_A 3IA7_B 3RSC_A 3IAA_B 2IYA_A 2IYF_B 2O6L_A 2VCH_A .... |
| >PRK12446 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.5e-25 Score=249.20 Aligned_cols=325 Identities=14% Similarity=0.150 Sum_probs=204.4
Q ss_pred CceEEEEEeecCCCcccHHHHHHHHHHHHHCCCeEEEEeCCCCcccccccCCCceeeeeeccCCCcccccccccChHHHH
Q 003222 13 SKHLVFAYYVTGHGFGHATRVVEVVRNLISAGHDVHVVTGAPDFVFTSEIQSPRLFIRKVLLDCGAVQADALTVDRLASL 92 (838)
Q Consensus 13 m~~~~Il~~v~g~G~GHv~r~laLA~~L~~~Gh~V~~v~~~~~~~~~~~i~~~~~~~~~~~~~~g~~~~~~~~~~~~~~l 92 (838)
|+++.| +.|...||+.|+++||++|+++||+|+|++.... +....+...++.+.... ..++. ....+
T Consensus 1 ~~~i~~---~~GGTGGHi~Pala~a~~l~~~g~~v~~vg~~~~-~e~~l~~~~g~~~~~~~-~~~l~--------~~~~~ 67 (352)
T PRK12446 1 MKKIVF---TGGGSAGHVTPNLAIIPYLKEDNWDISYIGSHQG-IEKTIIEKENIPYYSIS-SGKLR--------RYFDL 67 (352)
T ss_pred CCeEEE---EcCCcHHHHHHHHHHHHHHHhCCCEEEEEECCCc-cccccCcccCCcEEEEe-ccCcC--------CCchH
Confidence 555333 5566689999999999999999999999986542 22222221122222211 01110 00011
Q ss_pred HHHHHHhhccHHHHHHHHHHHHhcCCCcEEEECCCc---hHHHHHHHhCCcEEEEecCchhHHHHhhhhhcccchHHHHH
Q 003222 93 EKYSETAVAPRKSILKDEVEWLNSIKADLVVSDVVP---VACRAAADAGIRSVCVTNFSWDFIYAEYVMAAGHHHRSIVW 169 (838)
Q Consensus 93 ~~~~~~~~~~~~~~l~~~~~~L~~~kPDlVVsD~~~---~~~~aA~~lgIP~V~is~~~~~~i~~~~~~~~~~~~~~i~~ 169 (838)
..+...+. ......+...++++++||+||+...+ .++++|+.+++|++.+.+.... .. ..
T Consensus 68 ~~~~~~~~--~~~~~~~~~~i~~~~kPdvvi~~Ggy~s~p~~~aa~~~~~p~~i~e~n~~~----g~-----------~n 130 (352)
T PRK12446 68 KNIKDPFL--VMKGVMDAYVRIRKLKPDVIFSKGGFVSVPVVIGGWLNRVPVLLHESDMTP----GL-----------AN 130 (352)
T ss_pred HHHHHHHH--HHHHHHHHHHHHHhcCCCEEEecCchhhHHHHHHHHHcCCCEEEECCCCCc----cH-----------HH
Confidence 11211110 11123345678999999999987533 3578899999999988543311 00 01
Q ss_pred HHHhhccccceEE-ecCCCC-CCC-CCCceeecCcccccCCcChHHHHHHhCCCCCCcEEEEEcCCCCch--hhhHHhh-
Q 003222 170 QIAEDYSHCEFLI-RLPGYC-PMP-AFRDVIDVPLVVRRLHKSRKEVRKELGIEDDVKLLILNFGGQPAG--WKLKEEY- 243 (838)
Q Consensus 170 ~l~~~y~~~d~ll-~~~~~~-~~p-~~~~v~~ip~~~~~~~~~~~~~r~~l~~~~~~~~Vlvs~Gs~~~~--~~ll~~l- 243 (838)
++...+. ++++ .++... ..+ ....++++|+........+++.++.+++++++++|++++||++.. .++....
T Consensus 131 r~~~~~a--~~v~~~f~~~~~~~~~~k~~~tG~Pvr~~~~~~~~~~~~~~~~l~~~~~~iLv~GGS~Ga~~in~~~~~~l 208 (352)
T PRK12446 131 KIALRFA--SKIFVTFEEAAKHLPKEKVIYTGSPVREEVLKGNREKGLAFLGFSRKKPVITIMGGSLGAKKINETVREAL 208 (352)
T ss_pred HHHHHhh--CEEEEEccchhhhCCCCCeEEECCcCCcccccccchHHHHhcCCCCCCcEEEEECCccchHHHHHHHHHHH
Confidence 1111111 1111 121110 011 112344555433222233456677788888899999999999985 2332221
Q ss_pred --CCCCcEE-EEeCCCCCC--C--CCCeEECCCC-CCHHHHHhhcCEEEecCChhhHHHHHHcCCcEEEEeCCCC---CC
Q 003222 244 --LPSGWKC-LVCGASDSQ--L--PPNFIKLPKD-AYTPDFMAASDCMLGKIGYGTVSEALAYKLPFVFVRRDYF---NE 312 (838)
Q Consensus 244 --~~~~~~~-vv~G~~~~~--l--p~nv~~~~~~-~~~pdlLa~adl~It~gG~~Tv~Eal~~GvP~l~iP~~~~---~E 312 (838)
+..++.+ .++|++..+ + -.++.+++|. ++|+++|++||++|||+|.+|++|++++|+|+|++|.+.. .+
T Consensus 209 ~~l~~~~~vv~~~G~~~~~~~~~~~~~~~~~~f~~~~m~~~~~~adlvIsr~G~~t~~E~~~~g~P~I~iP~~~~~~~~~ 288 (352)
T PRK12446 209 PELLLKYQIVHLCGKGNLDDSLQNKEGYRQFEYVHGELPDILAITDFVISRAGSNAIFEFLTLQKPMLLIPLSKFASRGD 288 (352)
T ss_pred HhhccCcEEEEEeCCchHHHHHhhcCCcEEecchhhhHHHHHHhCCEEEECCChhHHHHHHHcCCCEEEEcCCCCCCCch
Confidence 1234544 467875311 1 1356677887 6899999999999999999999999999999999997532 47
Q ss_pred hHHHHHHHHHcCcEEEEecCCCChhhHHHHHHHHhhCCCCcc------CCCCHHHHHHHHHHH
Q 003222 313 EPFLRNMLEFYQGGVEMIRRDLLTGHWKPYLERAISLKPCYE------GGINGGEVAAHILQE 369 (838)
Q Consensus 313 Q~~Na~~l~~~G~g~~l~~~~~~~~~l~~~l~~ll~~~~~~~------~~~~g~~~~a~~i~~ 369 (838)
|..||+++++.|++..+...+++++.+.+.|.++++++..+. ..+++++++++.+.+
T Consensus 289 Q~~Na~~l~~~g~~~~l~~~~~~~~~l~~~l~~ll~~~~~~~~~~~~~~~~~aa~~i~~~i~~ 351 (352)
T PRK12446 289 QILNAESFERQGYASVLYEEDVTVNSLIKHVEELSHNNEKYKTALKKYNGKEAIQTIIDHISE 351 (352)
T ss_pred HHHHHHHHHHCCCEEEcchhcCCHHHHHHHHHHHHcCHHHHHHHHHHcCCCCHHHHHHHHHHh
Confidence 999999999999999999889999999999999987653332 456777766666543
|
|
| >cd03784 GT1_Gtf_like This family includes the Gtfs, a group of homologous glycosyltransferases involved in the final stages of the biosynthesis of antibiotics vancomycin and related chloroeremomycin | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.3e-26 Score=258.84 Aligned_cols=325 Identities=18% Similarity=0.128 Sum_probs=191.2
Q ss_pred EEEEEeecCCCcccHHHHHHHHHHHHHCCCeEEEEeCCCCcccccccCCCceeeeeeccCCCcccccccc-----cChHH
Q 003222 16 LVFAYYVTGHGFGHATRVVEVVRNLISAGHDVHVVTGAPDFVFTSEIQSPRLFIRKVLLDCGAVQADALT-----VDRLA 90 (838)
Q Consensus 16 ~~Il~~v~g~G~GHv~r~laLA~~L~~~Gh~V~~v~~~~~~~~~~~i~~~~~~~~~~~~~~g~~~~~~~~-----~~~~~ 90 (838)
|+|+|+.. ++.||+.|+++||++|+++||+|+|++... +...+...++.+.+...+.......... .....
T Consensus 1 mrIl~~~~-p~~GHv~P~l~la~~L~~rGh~V~~~t~~~---~~~~v~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (401)
T cd03784 1 MRVLITTI-GSRGDVQPLVALAWALRAAGHEVRVATPPE---FADLVEAAGLEFVPVGGDPDELLASPERNAGLLLLGPG 76 (401)
T ss_pred CeEEEEeC-CCcchHHHHHHHHHHHHHCCCeEEEeeCHh---HHHHHHHcCCceeeCCCCHHHHHhhhhhcccccccchH
Confidence 46766654 479999999999999999999999998853 1122222233443322111111000000 00001
Q ss_pred HHHHHHHHhhccHHHHHHHHHHHHhcCCCcEEEECC-CchHHHHHHHhCCcEEEEecCchhHHH----------H-hhh-
Q 003222 91 SLEKYSETAVAPRKSILKDEVEWLNSIKADLVVSDV-VPVACRAAADAGIRSVCVTNFSWDFIY----------A-EYV- 157 (838)
Q Consensus 91 ~l~~~~~~~~~~~~~~l~~~~~~L~~~kPDlVVsD~-~~~~~~aA~~lgIP~V~is~~~~~~i~----------~-~~~- 157 (838)
........+.......+.+..+.+++++||+||+|. .+++..+|+.+|||++.+....|.... . .+.
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~pDlvi~d~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (401)
T cd03784 77 LLLGALRLLRREAEAMLDDLVAAARDWGPDLVVADPLAFAGAVAAEALGIPAVRLLLGPDTPTSAFPPPLGRANLRLYAL 156 (401)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccCCCEEEeCcHHHHHHHHHHHhCCCeEEeecccCCccccCCCccchHHHHHHHH
Confidence 111111112223344555566677789999999995 777888999999999988543321000 0 000
Q ss_pred hhcc---cchHHHHHHHHhhccc---------cce-EEecCCCC--CCCCCCc-eeec--Cccccc-CCcChHHHHHHhC
Q 003222 158 MAAG---HHHRSIVWQIAEDYSH---------CEF-LIRLPGYC--PMPAFRD-VIDV--PLVVRR-LHKSRKEVRKELG 218 (838)
Q Consensus 158 ~~~~---~~~~~i~~~l~~~y~~---------~d~-ll~~~~~~--~~p~~~~-v~~i--p~~~~~-~~~~~~~~r~~l~ 218 (838)
.... .............+.. .+. +...++.. ..+..+. ...+ +..... ....+.++..++.
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 236 (401)
T cd03784 157 LEAELWQDLLGAWLRARRRRLGLPPLSLLDGSDVPELYGFSPAVLPPPPDWPRFDLVTGYGFRDVPYNGPPPPELWLFLA 236 (401)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCCcccccCCCcEEEecCcccCCCCCCccccCcEeCCCCCCCCCCCCCCHHHHHHHh
Confidence 0000 0000111111111211 011 11111111 1111111 1111 111111 1122345556654
Q ss_pred CCCCCcEEEEEcCCCCch--hhh----HHhhCCCCcEEE-EeCCCCC---CCCCCeEECCCCCCHHHHHhhcCEEEecCC
Q 003222 219 IEDDVKLLILNFGGQPAG--WKL----KEEYLPSGWKCL-VCGASDS---QLPPNFIKLPKDAYTPDFMAASDCMLGKIG 288 (838)
Q Consensus 219 ~~~~~~~Vlvs~Gs~~~~--~~l----l~~l~~~~~~~v-v~G~~~~---~lp~nv~~~~~~~~~pdlLa~adl~It~gG 288 (838)
+++++|||++||.... ..+ ++.+...++.++ .+|.... .+++||++.+|++ +.++|++||+||||||
T Consensus 237 --~~~~~v~v~~Gs~~~~~~~~~~~~~~~a~~~~~~~~i~~~g~~~~~~~~~~~~v~~~~~~p-~~~ll~~~d~~I~hgG 313 (401)
T cd03784 237 --AGRPPVYVGFGSMVVRDPEALARLDVEAVATLGQRAILSLGWGGLGAEDLPDNVRVVDFVP-HDWLLPRCAAVVHHGG 313 (401)
T ss_pred --CCCCcEEEeCCCCcccCHHHHHHHHHHHHHHcCCeEEEEccCccccccCCCCceEEeCCCC-HHHHhhhhheeeecCC
Confidence 4678999999998652 222 233333455444 4565432 3688999988764 4589999999999999
Q ss_pred hhhHHHHHHcCCcEEEEeCCCCCChHHHHHHHHHcCcEEEEecCCCChhhHHHHHHHHhhC
Q 003222 289 YGTVSEALAYKLPFVFVRRDYFNEEPFLRNMLEFYQGGVEMIRRDLLTGHWKPYLERAISL 349 (838)
Q Consensus 289 ~~Tv~Eal~~GvP~l~iP~~~~~EQ~~Na~~l~~~G~g~~l~~~~~~~~~l~~~l~~ll~~ 349 (838)
+||++|++++|+|+|++| .+.||+.||+++++.|+|+.+...+++++.+.++|++++++
T Consensus 314 ~~t~~eal~~GvP~v~~P--~~~dQ~~~a~~~~~~G~g~~l~~~~~~~~~l~~al~~~l~~ 372 (401)
T cd03784 314 AGTTAAALRAGVPQLVVP--FFGDQPFWAARVAELGAGPALDPRELTAERLAAALRRLLDP 372 (401)
T ss_pred chhHHHHHHcCCCEEeeC--CCCCcHHHHHHHHHCCCCCCCCcccCCHHHHHHHHHHHhCH
Confidence 999999999999999999 56899999999999999999988778889999999999864
|
Gtfs transfer sugar moieties from an activated NDP-sugar donor to the oxidatively cross-linked heptapeptide core of vancomycin group antibiotics. The core structure is important for the bioactivity of the antibiotics. |
| >KOG0631 consensus Galactokinase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.94 E-value=6.5e-27 Score=254.01 Aligned_cols=236 Identities=27% Similarity=0.380 Sum_probs=179.6
Q ss_pred HHhccCCCCCceEEEEccccccccccccccCCCeeeccccccceEEEEEEcCCccchhhhhhhhccCCCCCCCCCeEEEE
Q 003222 486 AAAGLFNWEEEIFVARAPGRLDVMGGIADYSGSLVLQMPIREACHVALQKISPSKQRLWKHALARHNDKGQGPMPVLQIV 565 (838)
Q Consensus 486 ~~~~~f~~~~~~~~~~APGRv~L~GeH~Dy~gg~vl~~ai~~~~~v~~~~~~d~~~~l~~~~~~~~~~~~~~~~~~i~i~ 565 (838)
++...|+. .+..+++|||||||+|||+||+|+.|+|||||..+.+++.+++|+.++ +++.
T Consensus 29 ~~~~~~~~-kp~~~a~~PgRVnLiGEHiDy~~~sVlpmaid~~~l~~~~~~~d~~~s-------------------l~~t 88 (489)
T KOG0631|consen 29 AFQAAYGA-KPVFVARAPGRVNLIGEHIDYCGYSVLPMAIDVDTLIAVAPSDDGIVS-------------------LRLT 88 (489)
T ss_pred HHHHhhCC-CceEEEecCCceecccceeeecCceeeeEEeeeeeEEEEEEcCCCcee-------------------EEEe
Confidence 45568895 567899999999999999999999999999999999999999987533 4444
Q ss_pred ecccccCCCCCceeccCCccccCCCCcchhhhhcccCCCCCCChhHHH----HHHHHHHHHHhCCCCCC--CEEEEEEeC
Q 003222 566 SYGSELSNRGPTFDMDLSDFMDEGKPMSYEKAKKYFDTNPSQKWAAYV----AGTILVLMTELGVRFED--SISMLVSSA 639 (838)
Q Consensus 566 s~~~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~~~~~~w~~y~----~g~i~~~~~~~g~~~~~--g~~i~i~s~ 639 (838)
++++++. .+++++... . ... .....+|.||+ +|+...+ +..+..... |+.+...++
T Consensus 89 N~~~~f~----~~~~~~p~~-~----~~I--------~~~~~~w~ny~~C~~~g~h~~~-~~~~~~~~~~vGl~~l~~g~ 150 (489)
T KOG0631|consen 89 NFNPDFI----YFKYPLPSI-V----WQI--------DPDVSKWENYFYCGMKGFHEYI-KRKPVRFEPPVGLSILNDGS 150 (489)
T ss_pred cCCCccc----eeeccCCch-h----ccc--------CCCccchhhhhccchHHHHHHH-hccccccCCCcceEEEecCC
Confidence 4444432 233333220 0 000 12347999999 4443332 223443334 999999999
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHh-CCC--CCHHHHHHHHHHHHhhhcCCCCChhhHHHhhcCCCCeEEEEEe--cCCc
Q 003222 640 VPEGKGVSSSASVEVASMSAIAAAH-GLN--IHPRDLALLCQKVENHIVGAPCGVMDQMASACGEANKLLAMVC--QPAE 714 (838)
Q Consensus 640 iP~g~GLgSSAA~~va~~~al~~l~-~~~--l~~~ela~~a~~~E~~~~G~~~G~mDq~a~~~G~~~~~l~~d~--~~~~ 714 (838)
+|.|+|||||||+.++.+.|...+. |.+ +++.+++.++..+| .++|.++|.|||+++++|.+++++++++ .|..
T Consensus 151 vPtgsgLsSsaa~~c~a~lA~~~~~~gpn~~~~kkd~~~i~~~ae-~~~G~~~gGmdq~asvl~~~~~Al~v~~~~~Pf~ 229 (489)
T KOG0631|consen 151 VPTGSGLSSSAAWLCAAALATLKLNLGPNFIISKKDLATITVVAE-SYIGLNSGGMDQAASVLAEKGHALLVDPYFTPFR 229 (489)
T ss_pred CCCCCCcchhHHHHHHHHHHHHHHhcCCCcccchhhhhcceEEee-cccCcCCCcHHHHHHHHHhcCceEEecccCCccc
Confidence 9999999999999999999999988 776 88999999999888 5689999999999999999999999993 3665
Q ss_pred eeeeeccCCCeEEEEEeCCCCCc---CCCCchhhHH-----HHHhcChHHHhccc
Q 003222 715 LLGVVEIPSHIRFWGIDSGIRHS---VGGADYGSVR-----AGAFMGRKMIKSTA 761 (838)
Q Consensus 715 ~~~~v~~~~~~~~vi~~s~~~~~---~~~~~y~~~r-----~~~~~g~~~l~~~~ 761 (838)
. ..+++++.-+|+|.+|-+... .+.+.||.|. ++++++.+.+.+..
T Consensus 230 ~-~~lk~~~~~vfvI~~~L~~~nk~~~a~tnynlRv~E~~ia~~~la~k~~~~~~ 283 (489)
T KOG0631|consen 230 R-SMLKLPDGGVFVIANSLVESNKAETAETNYNLRVVEGTIAAGELAAKILVELP 283 (489)
T ss_pred c-ccccCCCCceEEEechhhhhcchhhhhhhhhceeEeeehhhHHHHHHhhcccH
Confidence 4 577778777999999888774 4567898884 45566666555554
|
|
| >TIGR00661 MJ1255 conserved hypothetical protein | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.6e-25 Score=242.96 Aligned_cols=307 Identities=17% Similarity=0.145 Sum_probs=184.5
Q ss_pred EEEEeecCCCcccHHHHHHHHHHHHHCCCeEEEEeCCCC-cccccccCCCceeeeeeccCCCcccccccccChHHHHHHH
Q 003222 17 VFAYYVTGHGFGHATRVVEVVRNLISAGHDVHVVTGAPD-FVFTSEIQSPRLFIRKVLLDCGAVQADALTVDRLASLEKY 95 (838)
Q Consensus 17 ~Il~~v~g~G~GHv~r~laLA~~L~~~Gh~V~~v~~~~~-~~~~~~i~~~~~~~~~~~~~~g~~~~~~~~~~~~~~l~~~ 95 (838)
+|+|+++|+|+||++|+++||++|++ ||+|+|++.... .++.... .+.+...+ +.. +...++ ..+..+++...
T Consensus 1 ril~~~~g~G~GH~~r~~ala~~L~~-g~ev~~~~~~~~~~~~~~~~-~~~~~~~p-~~~--~~~~~~-~~~~~~~l~~~ 74 (321)
T TIGR00661 1 KILYSVCGEGFGHTTRSVAIGEALKN-DYEVSYIASGRSKNYISKYG-FKVFETFP-GIK--LKGEDG-KVNIVKTLRNK 74 (321)
T ss_pred CEEEEEeccCccHHHHHHHHHHHHhC-CCeEEEEEcCCHHHhhhhhc-CcceeccC-Cce--EeecCC-cCcHHHHHHhh
Confidence 47889999999999999999999999 999999876541 1111110 01111111 001 111111 13344443322
Q ss_pred HHHhhccHHHHHHHHHHHHhcCCCcEEEECCCchHHHHHHHhCCcEEEEecCchhHHHHhhhhhcccchHHHHHHHHhhc
Q 003222 96 SETAVAPRKSILKDEVEWLNSIKADLVVSDVVPVACRAAADAGIRSVCVTNFSWDFIYAEYVMAAGHHHRSIVWQIAEDY 175 (838)
Q Consensus 96 ~~~~~~~~~~~l~~~~~~L~~~kPDlVVsD~~~~~~~aA~~lgIP~V~is~~~~~~i~~~~~~~~~~~~~~i~~~l~~~y 175 (838)
..+ ....+.++.+++++++||+||+|+.+.+.++|+.++||++.+.+ .+...+.... ....+....+...+
T Consensus 75 ~~~----~~~~~~~~~~~l~~~~pDlVi~d~~~~~~~aA~~~~iP~i~i~~-q~~~~~~~~~----~~~~~~~~~~~~~~ 145 (321)
T TIGR00661 75 EYS----PKKAIRREINIIREYNPDLIISDFEYSTVVAAKLLKIPVICISN-QNYTRYPLKT----DLIVYPTMAALRIF 145 (321)
T ss_pred ccc----cHHHHHHHHHHHHhcCCCEEEECCchHHHHHHHhcCCCEEEEec-chhhcCCccc----chhHHHHHHHHHHh
Confidence 121 11345667889999999999999999999999999999998876 2211111000 00111112222222
Q ss_pred -cccceEEecCCCCCCCCCCceeecCcccc-cC-CcChHHHHHHhCCCCCCcEEEEEcCCCCchhhhHHhhCC-CCcEEE
Q 003222 176 -SHCEFLIRLPGYCPMPAFRDVIDVPLVVR-RL-HKSRKEVRKELGIEDDVKLLILNFGGQPAGWKLKEEYLP-SGWKCL 251 (838)
Q Consensus 176 -~~~d~ll~~~~~~~~p~~~~v~~ip~~~~-~~-~~~~~~~r~~l~~~~~~~~Vlvs~Gs~~~~~~ll~~l~~-~~~~~v 251 (838)
..++.+....+..+.+.. |.... .+ +..+.+..+.. +.+.+.|++++|+.+.. .+++.+.. +.+.++
T Consensus 146 ~~~~~~~~~~~~~~~~~~~------p~~~~~~~~~~~~~~~~~~~--~~~~~~iLv~~g~~~~~-~l~~~l~~~~~~~~i 216 (321)
T TIGR00661 146 NERCERFIVPDYPFPYTIC------PKIIKNMEGPLIRYDVDDVD--NYGEDYILVYIGFEYRY-KILELLGKIANVKFV 216 (321)
T ss_pred ccccceEeeecCCCCCCCC------ccccccCCCcccchhhhccc--cCCCCcEEEECCcCCHH-HHHHHHHhCCCeEEE
Confidence 223333222111111111 11111 11 11112222211 23457788998886653 44555432 344444
Q ss_pred EeCCCC--CCCCCCeEECCCCC-CHHHHHhhcCEEEecCChhhHHHHHHcCCcEEEEeCCCCCChHHHHHHHHHcCcEEE
Q 003222 252 VCGASD--SQLPPNFIKLPKDA-YTPDFMAASDCMLGKIGYGTVSEALAYKLPFVFVRRDYFNEEPFLRNMLEFYQGGVE 328 (838)
Q Consensus 252 v~G~~~--~~lp~nv~~~~~~~-~~pdlLa~adl~It~gG~~Tv~Eal~~GvP~l~iP~~~~~EQ~~Na~~l~~~G~g~~ 328 (838)
+.+... ..+++|+.+.+|.. +++++|+.||++|||+|++|++|++++|+|+|++|.+.+.||..||+.+++.|+|+.
T Consensus 217 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~ad~vI~~~G~~t~~Ea~~~g~P~l~ip~~~~~eQ~~na~~l~~~g~~~~ 296 (321)
T TIGR00661 217 CYSYEVAKNSYNENVEIRRITTDNFKELIKNAELVITHGGFSLISEALSLGKPLIVIPDLGQFEQGNNAVKLEDLGCGIA 296 (321)
T ss_pred EeCCCCCccccCCCEEEEECChHHHHHHHHhCCEEEECCChHHHHHHHHcCCCEEEEcCCCcccHHHHHHHHHHCCCEEE
Confidence 333221 12678999888874 788999999999999999999999999999999998777799999999999999999
Q ss_pred EecCCCChhhHHHHHHHHhhCC
Q 003222 329 MIRRDLLTGHWKPYLERAISLK 350 (838)
Q Consensus 329 l~~~~~~~~~l~~~l~~ll~~~ 350 (838)
++..++ .+.+.+.++++++
T Consensus 297 l~~~~~---~~~~~~~~~~~~~ 315 (321)
T TIGR00661 297 LEYKEL---RLLEAILDIRNMK 315 (321)
T ss_pred cChhhH---HHHHHHHhccccc
Confidence 987775 3334554555444
|
This model represents nearly the full length of MJ1255 from Methanococcus jannaschii and of an unpublished protein from Vibrio cholerae, as well as the C-terminal half of a protein from Methanobacterium thermoautotrophicum. A small region (~50 amino acids) within the domain appears related to a family of sugar transferases. |
| >PLN02677 mevalonate kinase | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.5e-26 Score=252.54 Aligned_cols=206 Identities=22% Similarity=0.321 Sum_probs=136.3
Q ss_pred EEEEccccccccccccccCCCeeeccccccceEEEEEEcCC----ccchhhhhhhhccCCCCCCCCCeEEEEecccccCC
Q 003222 498 FVARAPGRLDVMGGIADYSGSLVLQMPIREACHVALQKISP----SKQRLWKHALARHNDKGQGPMPVLQIVSYGSELSN 573 (838)
Q Consensus 498 ~~~~APGRv~L~GeH~Dy~gg~vl~~ai~~~~~v~~~~~~d----~~~~l~~~~~~~~~~~~~~~~~~i~i~s~~~~~~~ 573 (838)
+.++|||||+|+|||+||+|++++++||+++||+.+++++. +.+.+. +|++.+.
T Consensus 3 i~v~apgk~~l~Geh~~~~g~~a~~~ai~~~~~~~~~~~~~~~~~~~i~~~--------------~~di~~~-------- 60 (387)
T PLN02677 3 VKARAPGKIILAGEHAVVHGSTAVAAAIDLYTYVSLRFPPSAENDDTLKLQ--------------LKDLGLE-------- 60 (387)
T ss_pred eEEeCCccEEEeeeeeeecCCeeeeeEeeceEEEEEEecCCCCCCCeEEEE--------------cCCCCce--------
Confidence 47899999999999999999999999999999999998642 222211 3333321
Q ss_pred CCCceeccCCcccc---------CCCCcchh-----hhhcccCC--CCC-CChh-HHHHHHHHHHHHHhCCCCCCCEEEE
Q 003222 574 RGPTFDMDLSDFMD---------EGKPMSYE-----KAKKYFDT--NPS-QKWA-AYVAGTILVLMTELGVRFEDSISML 635 (838)
Q Consensus 574 ~~~~~~~~l~~~~~---------~~~p~~~~-----~~~~~~~~--~~~-~~w~-~y~~g~i~~~~~~~g~~~~~g~~i~ 635 (838)
++++++++.. ...+..+. ...++... .++ ..|. +.+.+.+.-++.-. .. .++++.
T Consensus 61 ----~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~~~~~~flyl~~~~~--~~-~~~~i~ 133 (387)
T PLN02677 61 ----FSWPLARIKEALPDLGTPCPSTPTSCSEETLKSIAALVEEQNIPEAKIWLSSGVSAFLWLYTSIL--GF-NPATVV 133 (387)
T ss_pred ----EEechHhhhhhhccccccccccccccCHHHHHHHHHHHHhcCCcchhhhhhhHHHHHHHHHHHhc--cC-CCeEEE
Confidence 2233222110 00111110 00111111 010 0110 11112111122111 12 479999
Q ss_pred EEeCCCCCCCCChHHHHHHHHHHHHHHHhCC-CC-------------CHHHHHHHHHHHHhhhcCCCCChhhHHHhhcCC
Q 003222 636 VSSAVPEGKGVSSSASVEVASMSAIAAAHGL-NI-------------HPRDLALLCQKVENHIVGAPCGVMDQMASACGE 701 (838)
Q Consensus 636 i~s~iP~g~GLgSSAA~~va~~~al~~l~~~-~l-------------~~~ela~~a~~~E~~~~G~~~G~mDq~a~~~G~ 701 (838)
|+|+||+|+|||||||++||++.|+..+++. ++ +.+++.++|+.+|+.+||.|||+ |++++++||
T Consensus 134 I~S~lP~GaGLGSSAAv~Va~~~AL~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~A~~~E~~~hG~pSGi-D~a~s~~Gg 212 (387)
T PLN02677 134 VTSELPLGSGLGSSAAFCVALSAALLAASDSISVSTGGNGWSSLDETDLELVNKWAFEGEKIIHGKPSGI-DNTVSTYGN 212 (387)
T ss_pred EEccCCCCCCccHHHHHHHHHHHHHHHHhCCcccccccccccccChhHHHHHHHHHHHHHHHHhCCCCch-hHHHHhcCC
Confidence 9999999999999999999999999999983 22 23588899999999999999995 999999999
Q ss_pred CCeEEEEEecCCceeeeeccCCCeEEEEEeCCCCCcCC
Q 003222 702 ANKLLAMVCQPAELLGVVEIPSHIRFWGIDSGIRHSVG 739 (838)
Q Consensus 702 ~~~~l~~d~~~~~~~~~v~~~~~~~~vi~~s~~~~~~~ 739 (838)
++. ++.... ++++.+.++.|+|+|||++|++.
T Consensus 213 ---~I~--f~~~~~-~~l~~~~~l~llv~dTgv~~sT~ 244 (387)
T PLN02677 213 ---MIK--FKSGEL-TRLQSNMPLKMLITNTRVGRNTK 244 (387)
T ss_pred ---eEE--EcCCCc-eecCCCCCceEEEEECCCCCcHH
Confidence 344 444444 56666677899999999999863
|
|
| >TIGR01220 Pmev_kin_Gr_pos phosphomevalonate kinase, ERG8-type, Gram-positive branch | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.9e-25 Score=247.99 Aligned_cols=198 Identities=20% Similarity=0.213 Sum_probs=148.0
Q ss_pred EEEccccccccccccccC-CCeeeccccccceEEEEEEcCCccchhhhhhhhccCCCCCCCCCeEEEEecccccCCCCCc
Q 003222 499 VARAPGRLDVMGGIADYS-GSLVLQMPIREACHVALQKISPSKQRLWKHALARHNDKGQGPMPVLQIVSYGSELSNRGPT 577 (838)
Q Consensus 499 ~~~APGRv~L~GeH~Dy~-gg~vl~~ai~~~~~v~~~~~~d~~~~l~~~~~~~~~~~~~~~~~~i~i~s~~~~~~~~~~~ 577 (838)
.++|||||+|+|||+||+ |.+||++||++++++.++++++..+++ .|... .. ..
T Consensus 2 ~~~APGKl~L~GEhavv~~G~pAl~~aI~~~~~v~i~~~~~~~~~i---------------------~s~~~--~~--~~ 56 (358)
T TIGR01220 2 VVHAPGKLFVAGEYAVVEPGNPAILVAVDRFVTVTVEDADGAADVI---------------------ISSDL--GP--QP 56 (358)
T ss_pred eeecceeEEEeeeEEEecCCCeEEEEEEcCcEEEEEEeCCCCceEE---------------------EecCC--CC--Cc
Confidence 578999999999999999 667999999999999999988654333 22111 00 01
Q ss_pred eeccCCccccCCCCcchhhhhcccCCCCCCChhHHHHHHHHHHHH---HhCCCCCCCEEEEEEeCCCCC----CCCChHH
Q 003222 578 FDMDLSDFMDEGKPMSYEKAKKYFDTNPSQKWAAYVAGTILVLMT---ELGVRFEDSISMLVSSAVPEG----KGVSSSA 650 (838)
Q Consensus 578 ~~~~l~~~~~~~~p~~~~~~~~~~~~~~~~~w~~y~~g~i~~~~~---~~g~~~~~g~~i~i~s~iP~g----~GLgSSA 650 (838)
+.+..+.. .+..+ .....+|.+|+++++..+.+ ..+..+ .||++.|.|++|.+ +||||||
T Consensus 57 ~~~~~~~~-----~~~~~-------~~~~~~~~~~v~~~i~~~~~~~~~~~~~~-~g~~~~i~s~ip~~~g~k~GLGSSA 123 (358)
T TIGR01220 57 VGWRRHDG-----RLVVR-------DPDARSALAYVVSAIETVERYAGERNQKL-PALHLSVSSRLDEADGRKYGLGSSG 123 (358)
T ss_pred eEEEecCC-----ceeec-------ccccccchHHHHHHHHHHHHHHHhcCCCC-CceEEEEecCCCCcCCCCCCccHHH
Confidence 11111110 00000 01135799999999876533 335544 58999999999995 6999999
Q ss_pred HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhhhcCCCCChhhHHHhhcCCCCeEEEEE-ec------------------
Q 003222 651 SVEVASMSAIAAAHGLNIHPRDLALLCQKVENHIVGAPCGVMDQMASACGEANKLLAMV-CQ------------------ 711 (838)
Q Consensus 651 A~~va~~~al~~l~~~~l~~~ela~~a~~~E~~~~G~~~G~mDq~a~~~G~~~~~l~~d-~~------------------ 711 (838)
|++||++.|++.++|.++++++++++|+.+|+.++|.++| +||+++++||. +.+. +.
T Consensus 124 A~~Va~~~Al~~~~~~~l~~~~l~~lA~~~E~~~~g~~sg-~D~~a~~~GG~---i~~~~~~~~~~~~~~~~~~~~~~~~ 199 (358)
T TIGR01220 124 AVTVATVKALNAFYDLELSNDEIFKLAMLATAELQPKGSC-GDIAASTYGGW---IAYSTFDHDWVLQLARRVGVDRTLK 199 (358)
T ss_pred HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhhhCCCCCc-chhhhhhhCCE---EEEecCCHHHHhhhhhccchhhhhc
Confidence 9999999999999999999999999999999999999988 59999999994 3332 11
Q ss_pred ---CCceeeeeccCCCeEEEEEeCCCCCcC
Q 003222 712 ---PAELLGVVEIPSHIRFWGIDSGIRHSV 738 (838)
Q Consensus 712 ---~~~~~~~v~~~~~~~~vi~~s~~~~~~ 738 (838)
+....+++++|.++.|+|+|||+++++
T Consensus 200 ~~w~~~~~~~l~~~~~~~l~v~~tg~~~~T 229 (358)
T TIGR01220 200 APWPGLSIRPLPAPKGLTLLIGWTGSPAST 229 (358)
T ss_pred cCCCccceeECCCCCCCEEEEEeCCCCcCc
Confidence 111125777777899999999999984
|
This enzyme is part of the mevalonate pathway, one of two alternative pathways for the biosynthesis of IPP. In an example of nonorthologous gene displacement, two different types of phosphomevalonate kinase are found - the animal type and this ERG8 type. This model represents the low GC Gram-positive organism forms of the ERG8 type of phosphomevalonate kinase. |
| >PRK13412 fkp bifunctional fucokinase/L-fucose-1-P-guanylyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.6e-25 Score=267.41 Aligned_cols=200 Identities=17% Similarity=0.204 Sum_probs=147.3
Q ss_pred ceEEEEccccccccccccc------cCCCeeeccccccc----eEEEEEEcCCccchhhhhhhhccCCCCCCCCCeEEEE
Q 003222 496 EIFVARAPGRLDVMGGIAD------YSGSLVLQMPIREA----CHVALQKISPSKQRLWKHALARHNDKGQGPMPVLQIV 565 (838)
Q Consensus 496 ~~~~~~APGRv~L~GeH~D------y~gg~vl~~ai~~~----~~v~~~~~~d~~~~l~~~~~~~~~~~~~~~~~~i~i~ 565 (838)
.+.+.+|||||||+||||| |+||.|||+||+++ +++.++++++.++++++.+ +.....
T Consensus 608 ~~~~~~aPgRVnLiGghTDtPpy~~ynGG~VLn~AId~~g~~pi~v~v~~~~d~~irl~S~d-----------~~~~~~- 675 (974)
T PRK13412 608 QIVWGRSPVRIDLAGGWTDTPPYCLYSGGNVVNLAIELNGQPPLQVYVKPCSEPHIVLRSID-----------LGAMEV- 675 (974)
T ss_pred cEEEEeCceEEeecccCcCCCcccCcCCcEEEEEEEeCCCCccEEEEEEECCCCeEEEEECC-----------CCCceE-
Confidence 4555699999999999999 99999999999997 9999999988776665432 110001
Q ss_pred ecccccCCCCCceeccCCccccCCCCcchhhhhcccCCCCCCChhHHHHHHHHH-------------HHHHhCCCCCCCE
Q 003222 566 SYGSELSNRGPTFDMDLSDFMDEGKPMSYEKAKKYFDTNPSQKWAAYVAGTILV-------------LMTELGVRFEDSI 632 (838)
Q Consensus 566 s~~~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~~~~~~w~~y~~g~i~~-------------~~~~~g~~~~~g~ 632 (838)
++ +.+++. . ....++|.+|+||++.. .+++....+..|+
T Consensus 676 ------------v~-~~~~l~------~---------~~~~~~~~~~~K~al~~~G~~~~~~~~~~~~l~e~l~~~G~G~ 727 (974)
T PRK13412 676 ------------VR-TNEELR------D---------YKKVGSPFSIPKAALCLAGFAPRFSAESYASLEEQLKAFGSGI 727 (974)
T ss_pred ------------Ee-cchhhc------c---------cccccchHhhhhhhheecccccccccchhHHHHHHHHhcCCCe
Confidence 11 111110 0 11336899999998741 1222111122599
Q ss_pred EEEEEeCCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhhhcCCCCChhhHHHhhcCCCCeEEEEEecC
Q 003222 633 SMLVSSAVPEGKGVSSSASVEVASMSAIAAAHGLNIHPRDLALLCQKVENHIVGAPCGVMDQMASACGEANKLLAMVCQP 712 (838)
Q Consensus 633 ~i~i~s~iP~g~GLgSSAA~~va~~~al~~l~~~~l~~~ela~~a~~~E~~~~G~~~G~mDq~a~~~G~~~~~l~~d~~~ 712 (838)
++.+.|+||.|+|||||||++||++.|++++++.++++++++++|+.+|..++|.+++ |||+++++||. +++++.+
T Consensus 728 ~I~i~s~IP~GsGLGSSAAlavA~l~AL~~~~g~~ls~~ela~~A~~~E~~lhg~~g~-qDq~~a~~GG~---~~i~~~~ 803 (974)
T PRK13412 728 EITLLAAIPAGSGLGTSSILAATVLGAISDFCGLAWDKNEICNRTLVLEQLLTTGGGW-QDQYGGVLPGV---KLLQTGA 803 (974)
T ss_pred EEEEecCCCCCCCccHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHCCCCch-hhhhhHhcCCe---EEEEecC
Confidence 9999999999999999999999999999999999999999999999999887766655 99999999994 6666654
Q ss_pred C-c---eeeeeccCC------CeEEEEEeCCCCCcCC
Q 003222 713 A-E---LLGVVEIPS------HIRFWGIDSGIRHSVG 739 (838)
Q Consensus 713 ~-~---~~~~v~~~~------~~~~vi~~s~~~~~~~ 739 (838)
. . ...+++.+. +-.++|++||++|.+.
T Consensus 804 ~~~~~~~v~~L~~~~~~~~eLe~~LlL~yTGitR~T~ 840 (974)
T PRK13412 804 GFAQSPLVRWLPDSLFTQPEYRDCHLLYYTGITRTAK 840 (974)
T ss_pred CcccCcceeecCcchhhhhhccCcEEEEECCCeeeHH
Confidence 2 1 112333321 3468999999999753
|
|
| >COG0707 MurG UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.92 E-value=4.7e-23 Score=227.06 Aligned_cols=318 Identities=18% Similarity=0.147 Sum_probs=198.0
Q ss_pred eecCCCcccHHHHHHHHHHHHHCCCe-EEEEeCCCCcccccccCCCceeeeeeccCCCcccccccccChHHHHHHHHHHh
Q 003222 21 YVTGHGFGHATRVVEVVRNLISAGHD-VHVVTGAPDFVFTSEIQSPRLFIRKVLLDCGAVQADALTVDRLASLEKYSETA 99 (838)
Q Consensus 21 ~v~g~G~GHv~r~laLA~~L~~~Gh~-V~~v~~~~~~~~~~~i~~~~~~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~ 99 (838)
++.|.+.||+.|+++|+++|.++|++ |.++..... ......+..++.++.+ +.+.... .. .+..+...+
T Consensus 5 l~~gGTGGHv~pAlAl~~~l~~~g~~~v~~~~~~~~-~e~~l~~~~~~~~~~I--~~~~~~~----~~---~~~~~~~~~ 74 (357)
T COG0707 5 LTAGGTGGHVFPALALAEELAKRGWEQVIVLGTGDG-LEAFLVKQYGIEFELI--PSGGLRR----KG---SLKLLKAPF 74 (357)
T ss_pred EEeCCCccchhHHHHHHHHHHhhCccEEEEeccccc-ceeeeccccCceEEEE--ecccccc----cC---cHHHHHHHH
Confidence 34566689999999999999999995 666543221 1111111112333322 1221110 00 111111111
Q ss_pred hccHHHHHHHHHHHHhcCCCcEEEECC---CchHHHHHHHhCCcEEEE-ecCchhHHHHhhhhhcccchHHHHHHHHhhc
Q 003222 100 VAPRKSILKDEVEWLNSIKADLVVSDV---VPVACRAAADAGIRSVCV-TNFSWDFIYAEYVMAAGHHHRSIVWQIAEDY 175 (838)
Q Consensus 100 ~~~~~~~l~~~~~~L~~~kPDlVVsD~---~~~~~~aA~~lgIP~V~i-s~~~~~~i~~~~~~~~~~~~~~i~~~l~~~y 175 (838)
. .-..+.+..+.|++++||+|++.. ...+.++|..++||++.+ +|+.-.- .+.+...+
T Consensus 75 ~--~~~~~~~a~~il~~~kPd~vig~Ggyvs~P~~~Aa~~~~iPv~ihEqn~~~G~----------------ank~~~~~ 136 (357)
T COG0707 75 K--LLKGVLQARKILKKLKPDVVIGTGGYVSGPVGIAAKLLGIPVIIHEQNAVPGL----------------ANKILSKF 136 (357)
T ss_pred H--HHHHHHHHHHHHHHcCCCEEEecCCccccHHHHHHHhCCCCEEEEecCCCcch----------------hHHHhHHh
Confidence 1 112345667889999999999864 445678889999999988 3432100 01111111
Q ss_pred cccceEE-ecC--CCCCCCCCCceeecCcccccCCcChHHHHHHhCCCCCCcEEEEEcCCCCch--hhhHHhh---CCCC
Q 003222 176 SHCEFLI-RLP--GYCPMPAFRDVIDVPLVVRRLHKSRKEVRKELGIEDDVKLLILNFGGQPAG--WKLKEEY---LPSG 247 (838)
Q Consensus 176 ~~~d~ll-~~~--~~~~~p~~~~v~~ip~~~~~~~~~~~~~r~~l~~~~~~~~Vlvs~Gs~~~~--~~ll~~l---~~~~ 247 (838)
. +.+. ..+ .....+....++++|+...... .+....+..+. .++++|+|++||+|.. .+++... +...
T Consensus 137 a--~~V~~~f~~~~~~~~~~~~~~tG~Pvr~~~~~-~~~~~~~~~~~-~~~~~ilV~GGS~Ga~~ln~~v~~~~~~l~~~ 212 (357)
T COG0707 137 A--KKVASAFPKLEAGVKPENVVVTGIPVRPEFEE-LPAAEVRKDGR-LDKKTILVTGGSQGAKALNDLVPEALAKLANR 212 (357)
T ss_pred h--ceeeeccccccccCCCCceEEecCcccHHhhc-cchhhhhhhcc-CCCcEEEEECCcchhHHHHHHHHHHHHHhhhC
Confidence 1 0111 011 0001111123455555332222 22222222222 2788999999999985 2333322 1224
Q ss_pred cEE-EEeCCCCCC-----C-CCC-eEECCCCCCHHHHHhhcCEEEecCChhhHHHHHHcCCcEEEEeCCCC--CChHHHH
Q 003222 248 WKC-LVCGASDSQ-----L-PPN-FIKLPKDAYTPDFMAASDCMLGKIGYGTVSEALAYKLPFVFVRRDYF--NEEPFLR 317 (838)
Q Consensus 248 ~~~-vv~G~~~~~-----l-p~n-v~~~~~~~~~pdlLa~adl~It~gG~~Tv~Eal~~GvP~l~iP~~~~--~EQ~~Na 317 (838)
+.+ ..+|++... . ..| +++.+|.++|+++|+.+|++||++|.+|++|++++|+|+|++|.+.. ++|..||
T Consensus 213 ~~v~~~~G~~~~~~~~~~~~~~~~~~v~~f~~dm~~~~~~ADLvIsRaGa~Ti~E~~a~g~P~IliP~p~~~~~~Q~~NA 292 (357)
T COG0707 213 IQVIHQTGKNDLEELKSAYNELGVVRVLPFIDDMAALLAAADLVISRAGALTIAELLALGVPAILVPYPPGADGHQEYNA 292 (357)
T ss_pred eEEEEEcCcchHHHHHHHHhhcCcEEEeeHHhhHHHHHHhccEEEeCCcccHHHHHHHhCCCEEEeCCCCCccchHHHHH
Confidence 544 467876411 1 123 88899999999999999999999999999999999999999998765 5888899
Q ss_pred HHHHHcCcEEEEecCCCChhhHHHHHHHHhhCCCCcc---------CCCCHHHHHHHHHHHH
Q 003222 318 NMLEFYQGGVEMIRRDLLTGHWKPYLERAISLKPCYE---------GGINGGEVAAHILQET 370 (838)
Q Consensus 318 ~~l~~~G~g~~l~~~~~~~~~l~~~l~~ll~~~~~~~---------~~~~g~~~~a~~i~~~ 370 (838)
+.+++.|+|.++...+++++.+.+.|.++++++..+. ..++.+.++++.+...
T Consensus 293 ~~l~~~gaa~~i~~~~lt~~~l~~~i~~l~~~~~~l~~m~~~a~~~~~p~aa~~i~~~~~~~ 354 (357)
T COG0707 293 KFLEKAGAALVIRQSELTPEKLAELILRLLSNPEKLKAMAENAKKLGKPDAAERIADLLLAL 354 (357)
T ss_pred HHHHhCCCEEEeccccCCHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 9999999999999999999999999999998654321 5778888888877765
|
|
| >PLN02208 glycosyltransferase family protein | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.7e-22 Score=229.73 Aligned_cols=339 Identities=12% Similarity=0.115 Sum_probs=201.1
Q ss_pred ecCCCcccHHHHHHHHHHHHHCCCeEEEEeCCCCc-ccccc-cCCCceeeeeeccC--CCcccccccccChHHHHHHHHH
Q 003222 22 VTGHGFGHATRVVEVVRNLISAGHDVHVVTGAPDF-VFTSE-IQSPRLFIRKVLLD--CGAVQADALTVDRLASLEKYSE 97 (838)
Q Consensus 22 v~g~G~GHv~r~laLA~~L~~~Gh~V~~v~~~~~~-~~~~~-i~~~~~~~~~~~~~--~g~~~~~~~~~~~~~~l~~~~~ 97 (838)
++.++.||++|++.||+.|+.+|++|||+++.... ..... .....+.+...... .|+........+... .+..
T Consensus 10 ~P~paqGHi~P~l~LAk~La~~G~~VT~vtt~~~~~~i~~~~a~~~~i~~~~l~~p~~dgLp~g~~~~~~l~~---~l~~ 86 (442)
T PLN02208 10 FPWFAFGHMIPFLHLANKLAEKGHRVTFLLPKKAQKQLEHHNLFPDSIVFHPLTIPPVNGLPAGAETTSDIPI---SMDN 86 (442)
T ss_pred ecCccccHHHHHHHHHHHHHhCCCEEEEEeccchhhhhhcccCCCCceEEEEeCCCCccCCCCCcccccchhH---HHHH
Confidence 58899999999999999999999999999864310 01100 00012222221111 122110000001111 1111
Q ss_pred HhhccHHHHHHHHHHHHhcCCCcEEEECCCchHHHHHHHhCCcEEEEecCc-hhHHHHhh--------hhhccc------
Q 003222 98 TAVAPRKSILKDEVEWLNSIKADLVVSDVVPVACRAAADAGIRSVCVTNFS-WDFIYAEY--------VMAAGH------ 162 (838)
Q Consensus 98 ~~~~~~~~~l~~~~~~L~~~kPDlVVsD~~~~~~~aA~~lgIP~V~is~~~-~~~i~~~~--------~~~~~~------ 162 (838)
++......+.....+++++.+||+||+|+.+|+..+|+.+|||.+.+...+ +...+..+ .+..+.
T Consensus 87 ~~~~~~~~~~~~l~~~L~~~~~~cVV~D~~~wa~~vA~e~giP~~~f~~~~a~~~~~~~~~~~~~~~~~pglp~~~~~~~ 166 (442)
T PLN02208 87 LLSEALDLTRDQVEAAVRALRPDLIFFDFAQWIPEMAKEHMIKSVSYIIVSATTIAHTHVPGGKLGVPPPGYPSSKVLFR 166 (442)
T ss_pred HHHHHHHHHHHHHHHHHhhCCCeEEEECCcHhHHHHHHHhCCCEEEEEhhhHHHHHHHccCccccCCCCCCCCCcccccC
Confidence 111122233344566778889999999987888999999999998773321 11011000 010110
Q ss_pred ------------chHHHHHHHHhhccccceEEecCCCC---------CCCCCCceeecCccccc-C--CcChHHHHHHhC
Q 003222 163 ------------HHRSIVWQIAEDYSHCEFLIRLPGYC---------PMPAFRDVIDVPLVVRR-L--HKSRKEVRKELG 218 (838)
Q Consensus 163 ------------~~~~i~~~l~~~y~~~d~ll~~~~~~---------~~p~~~~v~~ip~~~~~-~--~~~~~~~r~~l~ 218 (838)
.+..+..++...+..++-++.-++.. ..+.-+++..||++... . ...++++.+||+
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~Ntf~eLE~~~~~~~~~~~~~~v~~vGpl~~~~~~~~~~~~~~~~wLd 246 (442)
T PLN02208 167 ENDAHALATLSIFYKRLYHQITTGLKSCDVIALRTCKEIEGKFCDYISRQYHKKVLLTGPMFPEPDTSKPLEEQWSHFLS 246 (442)
T ss_pred HHHcCcccccchHHHHHHHHHHhhhccCCEEEEECHHHHHHHHHHHHHhhcCCCEEEEeecccCcCCCCCCHHHHHHHHh
Confidence 01111111112233344333222211 11112568889887542 2 335678899998
Q ss_pred CCCCCcEEEEEcCCCCc-h-hhhHH---hh--CCCCcEEEEe-C--CCC--CCCC---------CCeEECCCCCCHH--H
Q 003222 219 IEDDVKLLILNFGGQPA-G-WKLKE---EY--LPSGWKCLVC-G--ASD--SQLP---------PNFIKLPKDAYTP--D 275 (838)
Q Consensus 219 ~~~~~~~Vlvs~Gs~~~-~-~~ll~---~l--~~~~~~~vv~-G--~~~--~~lp---------~nv~~~~~~~~~p--d 275 (838)
..+++++|||||||... . .++.+ .+ ....+.+++- + ... ..+| .|+.+. .|+| +
T Consensus 247 ~~~~~sVvyvSfGS~~~l~~~q~~e~~~~l~~s~~pf~wv~r~~~~~~~~~~~lp~~f~~r~~~~g~~v~---~W~PQ~~ 323 (442)
T PLN02208 247 GFPPKSVVFCSLGSQIILEKDQFQELCLGMELTGLPFLIAVKPPRGSSTVQEGLPEGFEERVKGRGVVWG---GWVQQPL 323 (442)
T ss_pred cCCCCcEEEEeccccccCCHHHHHHHHHHHHhCCCcEEEEEeCCCcccchhhhCCHHHHHHHhcCCcEee---ccCCHHH
Confidence 77778999999999875 2 22333 22 2234444443 1 101 1255 466553 5888 8
Q ss_pred HHhh--cCEEEecCChhhHHHHHHcCCcEEEEeCCCCCChHHHHHHHHH-cCcEEEEecCC---CChhhHHHHHHHHhhC
Q 003222 276 FMAA--SDCMLGKIGYGTVSEALAYKLPFVFVRRDYFNEEPFLRNMLEF-YQGGVEMIRRD---LLTGHWKPYLERAISL 349 (838)
Q Consensus 276 lLa~--adl~It~gG~~Tv~Eal~~GvP~l~iP~~~~~EQ~~Na~~l~~-~G~g~~l~~~~---~~~~~l~~~l~~ll~~ 349 (838)
+|+| +.+||||||+||++|++++|||||++| .+.||+.|++++++ .|+|+.++..+ ++.+.+..+|++++++
T Consensus 324 iL~H~~v~~FvtHcG~nS~~Eai~~GVP~l~~P--~~~DQ~~na~~~~~~~g~gv~~~~~~~~~~~~~~l~~ai~~~m~~ 401 (442)
T PLN02208 324 ILDHPSIGCFVNHCGPGTIWESLVSDCQMVLIP--FLSDQVLFTRLMTEEFEVSVEVSREKTGWFSKESLSNAIKSVMDK 401 (442)
T ss_pred HhcCCccCeEEccCCchHHHHHHHcCCCEEecC--cchhhHHHHHHHHHHhceeEEeccccCCcCcHHHHHHHHHHHhcC
Confidence 9987 678999999999999999999999999 89999999998775 89999997654 7889999999999865
Q ss_pred CCCccCCCCHHHHHHHHHHHHh
Q 003222 350 KPCYEGGINGGEVAAHILQETA 371 (838)
Q Consensus 350 ~~~~~~~~~g~~~~a~~i~~~~ 371 (838)
+. ......++-|..|.+.+
T Consensus 402 ~~---e~g~~~r~~~~~~~~~~ 420 (442)
T PLN02208 402 DS---DLGKLVRSNHTKLKEIL 420 (442)
T ss_pred Cc---hhHHHHHHHHHHHHHHH
Confidence 41 01233555555555553
|
|
| >COG1819 Glycosyl transferases, related to UDP-glucuronosyltransferase [Carbohydrate transport and metabolism / Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.92 E-value=4.1e-24 Score=241.06 Aligned_cols=340 Identities=17% Similarity=0.190 Sum_probs=200.3
Q ss_pred EEEEEeecCCCcccHHHHHHHHHHHHHCCCeEEEEeCCCCcccccccCCCceeeeeeccCCCcccccccccChHHHHH-H
Q 003222 16 LVFAYYVTGHGFGHATRVVEVVRNLISAGHDVHVVTGAPDFVFTSEIQSPRLFIRKVLLDCGAVQADALTVDRLASLE-K 94 (838)
Q Consensus 16 ~~Il~~v~g~G~GHv~r~laLA~~L~~~Gh~V~~v~~~~~~~~~~~i~~~~~~~~~~~~~~g~~~~~~~~~~~~~~l~-~ 94 (838)
|+|+|+..+. .||+.|+++|+++|+++||+|+|+|... +...+..-+..+..........+......+..++.. .
T Consensus 2 mkil~~~~~~-~Ghv~p~~aL~~eL~~~gheV~~~~~~~---~~~~ve~ag~~f~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (406)
T COG1819 2 MKILFVVCGA-YGHVNPCLALGKELRRRGHEVVFASTGK---FKEFVEAAGLAFVAYPIRDSELATEDGKFAGVKSFRRL 77 (406)
T ss_pred ceEEEEeccc-cccccchHHHHHHHHhcCCeEEEEeCHH---HHHHHHHhCcceeeccccCChhhhhhhhhhccchhHHH
Confidence 6788888888 9999999999999999999999999853 222221112111111110000000000111111222 1
Q ss_pred HHHHhhccHHHHHHHHHHHHhcCCCcEEEECCCchHHHHHHHhCCcEEEEecCch----------hHHH--H----h---
Q 003222 95 YSETAVAPRKSILKDEVEWLNSIKADLVVSDVVPVACRAAADAGIRSVCVTNFSW----------DFIY--A----E--- 155 (838)
Q Consensus 95 ~~~~~~~~~~~~l~~~~~~L~~~kPDlVVsD~~~~~~~aA~~lgIP~V~is~~~~----------~~i~--~----~--- 155 (838)
+.. ......+..+.+.+..||+|+.|...+..+++...++|.+....-.| ..+. . .
T Consensus 78 ~~~-----~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (406)
T COG1819 78 LQQ-----FKKLIRELLELLRELEPDLVVDDARLSLGLAARLLGIPVVGINVAPYTPLPAAGLPLPPVGIAGKLPIPLYP 152 (406)
T ss_pred hhh-----hhhhhHHHHHHHHhcchhhhhcchhhhhhhhhhhcccchhhhhhhhccCCcccccCcccccccccccccccc
Confidence 111 22344566788999999999999866655777888888765422111 0000 0 0
Q ss_pred hhhh-cc-c--chHHHHHHHHhhccc-cc-------eEEecCCCC--------CCC--CCC-ceeecCcccccCCcChHH
Q 003222 156 YVMA-AG-H--HHRSIVWQIAEDYSH-CE-------FLIRLPGYC--------PMP--AFR-DVIDVPLVVRRLHKSRKE 212 (838)
Q Consensus 156 ~~~~-~~-~--~~~~i~~~l~~~y~~-~d-------~ll~~~~~~--------~~p--~~~-~v~~ip~~~~~~~~~~~~ 212 (838)
.... .. . ...+ .......+.. .+ .++..++.. ..| .++ ....+|+....+.. +
T Consensus 153 ~~~~~~~~~~~~~~~-~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~---~ 228 (406)
T COG1819 153 LPPRLVRPLIFARSW-LPKLVVRRNLGLELGLPNIRRLFASGPLLEIAYTDVLFPPGDRLPFIGPYIGPLLGEAAN---E 228 (406)
T ss_pred cChhhccccccchhh-hhhhhhhhhccccccccchHHHhcCCCCccccccccccCCCCCCCCCcCccccccccccc---c
Confidence 0000 00 0 0000 0000000000 00 000000000 000 001 01112221111111 1
Q ss_pred HHHHhCCCCCCcEEEEEcCCCCchhh----hHHhhCCCCcEEEEe-CCCCC---CCCCCeEECCCCCCHHHHHhhcCEEE
Q 003222 213 VRKELGIEDDVKLLILNFGGQPAGWK----LKEEYLPSGWKCLVC-GASDS---QLPPNFIKLPKDAYTPDFMAASDCML 284 (838)
Q Consensus 213 ~r~~l~~~~~~~~Vlvs~Gs~~~~~~----ll~~l~~~~~~~vv~-G~~~~---~lp~nv~~~~~~~~~pdlLa~adl~I 284 (838)
.. .....++++||+|+||.....+ +++++...++.+++. |.... .+|.|+.+.++.+ ...++++||+||
T Consensus 229 ~~--~~~~~d~~~vyvslGt~~~~~~l~~~~~~a~~~l~~~vi~~~~~~~~~~~~~p~n~~v~~~~p-~~~~l~~ad~vI 305 (406)
T COG1819 229 LP--YWIPADRPIVYVSLGTVGNAVELLAIVLEALADLDVRVIVSLGGARDTLVNVPDNVIVADYVP-QLELLPRADAVI 305 (406)
T ss_pred Cc--chhcCCCCeEEEEcCCcccHHHHHHHHHHHHhcCCcEEEEeccccccccccCCCceEEecCCC-HHHHhhhcCEEE
Confidence 11 1134589999999999985322 233455667776665 44222 2799999976543 237999999999
Q ss_pred ecCChhhHHHHHHcCCcEEEEeCCCCCChHHHHHHHHHcCcEEEEecCCCChhhHHHHHHHHhhCCCCcc---------C
Q 003222 285 GKIGYGTVSEALAYKLPFVFVRRDYFNEEPFLRNMLEFYQGGVEMIRRDLLTGHWKPYLERAISLKPCYE---------G 355 (838)
Q Consensus 285 t~gG~~Tv~Eal~~GvP~l~iP~~~~~EQ~~Na~~l~~~G~g~~l~~~~~~~~~l~~~l~~ll~~~~~~~---------~ 355 (838)
||||+||++||+++|||+|++| ...||+.||.++++.|+|+.+..+.++++.++++|+++|+++...+ .
T Consensus 306 ~hGG~gtt~eaL~~gvP~vv~P--~~~DQ~~nA~rve~~G~G~~l~~~~l~~~~l~~av~~vL~~~~~~~~~~~~~~~~~ 383 (406)
T COG1819 306 HHGGAGTTSEALYAGVPLVVIP--DGADQPLNAERVEELGAGIALPFEELTEERLRAAVNEVLADDSYRRAAERLAEEFK 383 (406)
T ss_pred ecCCcchHHHHHHcCCCEEEec--CCcchhHHHHHHHHcCCceecCcccCCHHHHHHHHHHHhcCHHHHHHHHHHHHHhh
Confidence 9999999999999999999999 6689999999999999999999999999999999999998763221 4
Q ss_pred CCCHHHHHHHHHHHHhcc
Q 003222 356 GINGGEVAAHILQETAIG 373 (838)
Q Consensus 356 ~~~g~~~~a~~i~~~~~~ 373 (838)
..+|..++|+.|++....
T Consensus 384 ~~~g~~~~a~~le~~~~~ 401 (406)
T COG1819 384 EEDGPAKAADLLEEFARE 401 (406)
T ss_pred hcccHHHHHHHHHHHHhc
Confidence 677788899998887543
|
|
| >TIGR01426 MGT glycosyltransferase, MGT family | Back alignment and domain information |
|---|
Probab=99.92 E-value=3e-23 Score=235.01 Aligned_cols=335 Identities=15% Similarity=0.114 Sum_probs=196.4
Q ss_pred CCCcccHHHHHHHHHHHHHCCCeEEEEeCCCCcccccccCCCceeeeeeccCCCcc-cccccccChHHHHHHHHHHhhcc
Q 003222 24 GHGFGHATRVVEVVRNLISAGHDVHVVTGAPDFVFTSEIQSPRLFIRKVLLDCGAV-QADALTVDRLASLEKYSETAVAP 102 (838)
Q Consensus 24 g~G~GHv~r~laLA~~L~~~Gh~V~~v~~~~~~~~~~~i~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~l~~~~~~~~~~ 102 (838)
.++.||+.|+++||++|+++||+|+|++... +...+...++.+.......... ..+.. .. .....+...+...
T Consensus 3 ~p~~Ghv~P~l~lA~~L~~~Gh~V~~~~~~~---~~~~v~~~G~~~~~~~~~~~~~~~~~~~-~~--~~~~~~~~~~~~~ 76 (392)
T TIGR01426 3 IPAHGHVNPTLGVVEELVARGHRVTYATTEE---FAERVEAAGAEFVLYGSALPPPDNPPEN-TE--EEPIDIIEKLLDE 76 (392)
T ss_pred CCccccccccHHHHHHHHhCCCeEEEEeCHH---HHHHHHHcCCEEEecCCcCccccccccc-cC--cchHHHHHHHHHH
Confidence 3568999999999999999999999998853 2222222233333321111100 00000 00 0111111111111
Q ss_pred HHHHHHHHHHHHhcCCCcEEEECC-CchHHHHHHHhCCcEEEEecCchhH-HHH--------hhhhh---cccchHHHHH
Q 003222 103 RKSILKDEVEWLNSIKADLVVSDV-VPVACRAAADAGIRSVCVTNFSWDF-IYA--------EYVMA---AGHHHRSIVW 169 (838)
Q Consensus 103 ~~~~l~~~~~~L~~~kPDlVVsD~-~~~~~~aA~~lgIP~V~is~~~~~~-i~~--------~~~~~---~~~~~~~i~~ 169 (838)
....+....+.+++++||+||+|. .+++..+|+.+|||+|.++...+.. .+. ..... .......+.+
T Consensus 77 ~~~~~~~l~~~~~~~~pDlVi~d~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (392)
T TIGR01426 77 AEDVLPQLEEAYKGDRPDLIVYDIASWTGRLLARKWDVPVISSFPTFAANEEFEEMVSPAGEGSAEEGAIAERGLAEYVA 156 (392)
T ss_pred HHHHHHHHHHHhcCCCCCEEEECCccHHHHHHHHHhCCCEEEEehhhcccccccccccccchhhhhhhccccchhHHHHH
Confidence 222344456677888999999997 6788889999999999874321100 000 00000 0000011111
Q ss_pred ---HHHhhcc----c--------cc-eEEecCCCC-C-CCCCC-ceeecCcccccCCcChHHHHHHhCCCCCCcEEEEEc
Q 003222 170 ---QIAEDYS----H--------CE-FLIRLPGYC-P-MPAFR-DVIDVPLVVRRLHKSRKEVRKELGIEDDVKLLILNF 230 (838)
Q Consensus 170 ---~l~~~y~----~--------~d-~ll~~~~~~-~-~p~~~-~v~~ip~~~~~~~~~~~~~r~~l~~~~~~~~Vlvs~ 230 (838)
.+...+. . .+ .+...+..+ + .+.++ ++..+|+....+.. ...++....++++||+++
T Consensus 157 ~~~~~r~~~gl~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~Gp~~~~~~~----~~~~~~~~~~~~~v~vs~ 232 (392)
T TIGR01426 157 RLSALLEEHGITTPPVEFLAAPRRDLNLVYTPKAFQPAGETFDDSFTFVGPCIGDRKE----DGSWERPGDGRPVVLISL 232 (392)
T ss_pred HHHHHHHHhCCCCCCHHHHhcCCcCcEEEeCChHhCCCccccCCCeEEECCCCCCccc----cCCCCCCCCCCCEEEEec
Confidence 1111111 0 00 111111111 1 11222 35566664332111 111333335788999999
Q ss_pred CCCCch-h----hhHHhhCCCCcEEE-EeCCCCC-----CCCCCeEECCCCCCHHHHHhhcCEEEecCChhhHHHHHHcC
Q 003222 231 GGQPAG-W----KLKEEYLPSGWKCL-VCGASDS-----QLPPNFIKLPKDAYTPDFMAASDCMLGKIGYGTVSEALAYK 299 (838)
Q Consensus 231 Gs~~~~-~----~ll~~l~~~~~~~v-v~G~~~~-----~lp~nv~~~~~~~~~pdlLa~adl~It~gG~~Tv~Eal~~G 299 (838)
||.... . .+++.+...++.++ .+|.... .+++|+.+.+|++. .++|++||+||+|||++|++|++++|
T Consensus 233 Gs~~~~~~~~~~~~~~al~~~~~~~i~~~g~~~~~~~~~~~~~~v~~~~~~p~-~~ll~~~~~~I~hgG~~t~~Eal~~G 311 (392)
T TIGR01426 233 GTVFNNQPSFYRTCVEAFRDLDWHVVLSVGRGVDPADLGELPPNVEVRQWVPQ-LEILKKADAFITHGGMNSTMEALFNG 311 (392)
T ss_pred CccCCCCHHHHHHHHHHHhcCCCeEEEEECCCCChhHhccCCCCeEEeCCCCH-HHHHhhCCEEEECCCchHHHHHHHhC
Confidence 996432 1 23334544555443 4565432 26789998776553 38999999999999999999999999
Q ss_pred CcEEEEeCCCCCChHHHHHHHHHcCcEEEEecCCCChhhHHHHHHHHhhCCCCcc---------CCCCHHHHHHHHHHHH
Q 003222 300 LPFVFVRRDYFNEEPFLRNMLEFYQGGVEMIRRDLLTGHWKPYLERAISLKPCYE---------GGINGGEVAAHILQET 370 (838)
Q Consensus 300 vP~l~iP~~~~~EQ~~Na~~l~~~G~g~~l~~~~~~~~~l~~~l~~ll~~~~~~~---------~~~~g~~~~a~~i~~~ 370 (838)
+|+|++| ...||..|++++++.|+|+.+...+++++.+.++|++++.++.... ...+|++.+|+.|+++
T Consensus 312 ~P~v~~p--~~~dq~~~a~~l~~~g~g~~l~~~~~~~~~l~~ai~~~l~~~~~~~~~~~l~~~~~~~~~~~~aa~~i~~~ 389 (392)
T TIGR01426 312 VPMVAVP--QGADQPMTARRIAELGLGRHLPPEEVTAEKLREAVLAVLSDPRYAERLRKMRAEIREAGGARRAADEIEGF 389 (392)
T ss_pred CCEEecC--CcccHHHHHHHHHHCCCEEEeccccCCHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHh
Confidence 9999999 5689999999999999999998888888999999999997753110 2455666777766665
Q ss_pred h
Q 003222 371 A 371 (838)
Q Consensus 371 ~ 371 (838)
+
T Consensus 390 ~ 390 (392)
T TIGR01426 390 L 390 (392)
T ss_pred h
Confidence 3
|
This model describes the MGT (macroside glycosyltransferase) subfamily of the UDP-glucuronosyltransferase family. Members include a number of glucosyl transferases for macrolide antibiotic inactivation, but also include transferases of glucose-related sugars for macrolide antibiotic production. |
| >KOG1511 consensus Mevalonate kinase MVK/ERG12 [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.3e-24 Score=226.05 Aligned_cols=208 Identities=22% Similarity=0.286 Sum_probs=139.0
Q ss_pred EEEEccccccccccccccCCCeeeccccccceEEEEEEcCCccchhhhhhhhccCCCCCCCCCeEEEEecccccCCCCCc
Q 003222 498 FVARAPGRLDVMGGIADYSGSLVLQMPIREACHVALQKISPSKQRLWKHALARHNDKGQGPMPVLQIVSYGSELSNRGPT 577 (838)
Q Consensus 498 ~~~~APGRv~L~GeH~Dy~gg~vl~~ai~~~~~v~~~~~~d~~~~l~~~~~~~~~~~~~~~~~~i~i~s~~~~~~~~~~~ 577 (838)
..++|||+|+|+|||++++|.++++++|++|||+.+++..++++.+. +|++++.
T Consensus 5 l~vsaPGKvILfGEHAVVyg~~AlAaai~LrTyl~l~~san~~i~l~--------------l~di~~~------------ 58 (397)
T KOG1511|consen 5 LLVSAPGKVILFGEHAVVYGRTALAAAIDLRTYLRLQTSANDRILLQ--------------LPDISIE------------ 58 (397)
T ss_pred eeecCCccEEEeccceeEECCceeEEEeecceeEEEEecCCCeEEEe--------------cccCCce------------
Confidence 47899999999999999999999999999999999988877665543 4555442
Q ss_pred eeccCCccc-----------cCCCCcc---hhhhhcc---cCCCCCCChhHHHHHHHHHHHHHhCCCCCCC----EEEEE
Q 003222 578 FDMDLSDFM-----------DEGKPMS---YEKAKKY---FDTNPSQKWAAYVAGTILVLMTELGVRFEDS----ISMLV 636 (838)
Q Consensus 578 ~~~~l~~~~-----------~~~~p~~---~~~~~~~---~~~~~~~~w~~y~~g~i~~~~~~~g~~~~~g----~~i~i 636 (838)
+.|++.++. ..+.|.+ .+..+++ ++......-.--+...+.-++ -.-.+. .| +++.+
T Consensus 59 ~~w~l~~~~~~l~~~~~~~~~~q~p~~~~~~e~~k~l~~l~~~~~~~~~~~a~~~~lYlf~-~l~~~~-~g~lp~~~v~v 136 (397)
T KOG1511|consen 59 KAWSLADFNGALPEQRSTYESVQTPASEVRVELLKQLGGLLENQEKVKEHLAGLSFLYLFL-GLCLRA-PGTLPALTVVV 136 (397)
T ss_pred EEEEhhhhhhhhhhhhhhhhccCCcchhhhHHHHHHhhhhhhcchhhhHHHHHHHHHHHHH-Hhhhcc-cCCCcceEEEE
Confidence 234443321 0011110 1111111 111111100000111111111 111111 34 89999
Q ss_pred EeCCCCCCCCChHHHHHHHHHHHHHHHhCCCCCH-----------HHHHHHHHHHHhhhcCCCCChhhHHHhhcCCCCeE
Q 003222 637 SSAVPEGKGVSSSASVEVASMSAIAAAHGLNIHP-----------RDLALLCQKVENHIVGAPCGVMDQMASACGEANKL 705 (838)
Q Consensus 637 ~s~iP~g~GLgSSAA~~va~~~al~~l~~~~l~~-----------~ela~~a~~~E~~~~G~~~G~mDq~a~~~G~~~~~ 705 (838)
.|.+|+|+|||||||+.||+++++..+.|.--++ .-+-+||++.|..+||+|||+ |+++|++||.
T Consensus 137 ~SelP~GaGLGSSAa~sv~lAtall~~~g~i~~p~~~~~~~e~~l~Li~~WAf~gE~~iHGtpSGi-DnaV~t~Gg~--- 212 (397)
T KOG1511|consen 137 DSELPLGAGLGSSAAISVALATALLRLAGLIPPPGSNLSLAENDLALINKWAFEGEKCIHGTPSGI-DNAVCTYGGL--- 212 (397)
T ss_pred eccCCCcCCcchhHHHHHHHHHHHHHHcccCCCCcchhccccchHHHHHHHHhccceeecCCCccc-chhhhccCce---
Confidence 9999999999999999999999999998863222 345689999999999999995 9999999994
Q ss_pred EEEEecCCceeeeeccCCCeEEEEEeCCCCCcCC
Q 003222 706 LAMVCQPAELLGVVEIPSHIRFWGIDSGIRHSVG 739 (838)
Q Consensus 706 l~~d~~~~~~~~~v~~~~~~~~vi~~s~~~~~~~ 739 (838)
+ .+++....+.++..+.++++|+||+++|++.
T Consensus 213 i--~f~kg~~~~~Lk~~~~L~illtnTrv~RnTk 244 (397)
T KOG1511|consen 213 I--SFKKGVEIESLKHLPPLRILLTNTRVPRNTK 244 (397)
T ss_pred E--EeecCccceecccCCCceEEEEccccCccHH
Confidence 3 3444422255655567999999999999864
|
|
| >PRK03926 mevalonate kinase; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=9.5e-23 Score=222.56 Aligned_cols=171 Identities=25% Similarity=0.305 Sum_probs=138.4
Q ss_pred EEEEccccccccccccccCCCeeeccccccceEEEEEEcCCccchhhhhhhhccCCCCCCCCCeEEEEecccccCCCCCc
Q 003222 498 FVARAPGRLDVMGGIADYSGSLVLQMPIREACHVALQKISPSKQRLWKHALARHNDKGQGPMPVLQIVSYGSELSNRGPT 577 (838)
Q Consensus 498 ~~~~APGRv~L~GeH~Dy~gg~vl~~ai~~~~~v~~~~~~d~~~~l~~~~~~~~~~~~~~~~~~i~i~s~~~~~~~~~~~ 577 (838)
+.++|||||+|+|||+||+||.++.+||++++++.+.+++++ +.+.+.
T Consensus 2 ~~~~aPgkv~L~Geh~~~~g~~~l~~aI~~~~~v~i~~~~~~----------------------~~i~~~---------- 49 (302)
T PRK03926 2 VLCSAPGKIYLFGEHAVVYGKPAIACAIDLRTYVRAEFNDDS----------------------IYIESD---------- 49 (302)
T ss_pred eEEeeeeEEEEEecceeecCCeEEEEEecceEEEEEEECCCc----------------------eEEecc----------
Confidence 578999999999999999999999999999999999876431 112110
Q ss_pred eeccCCccccCCCCcchhhhhcccCCCCCCChhHHHHHHHHHHHHHhCCCCCCCEEEEEEeCCCCCCCCChHHHHHHHHH
Q 003222 578 FDMDLSDFMDEGKPMSYEKAKKYFDTNPSQKWAAYVAGTILVLMTELGVRFEDSISMLVSSAVPEGKGVSSSASVEVASM 657 (838)
Q Consensus 578 ~~~~l~~~~~~~~p~~~~~~~~~~~~~~~~~w~~y~~g~i~~~~~~~g~~~~~g~~i~i~s~iP~g~GLgSSAA~~va~~ 657 (838)
+ . ....|.+|+..++..+.+..+ . .|+++.+.++||.|+|||||||+.+|++
T Consensus 50 ~----~---------------------~~~~~~~~~~~~~~~~~~~~~--~-~g~~i~i~~~iP~~~GLGSSsA~~~a~~ 101 (302)
T PRK03926 50 Y----G---------------------KTGEKHPYVSAAIEKMREEAD--K-DGVTVSITSQIPVGSGLGSSAAVTVATI 101 (302)
T ss_pred c----c---------------------cccchhHHHHHHHHHHHHhcC--C-CCeEEEEecCCCCCCCccHHHHHHHHHH
Confidence 0 0 012467788888877665544 3 4999999999999999999999999999
Q ss_pred HHHHHHhCCCCCHHHHHHHHHHHHhhhcCCCCChhhHHHhhcCCCCeEEEEEecCCceeeeeccCCCeEEEEEeCCCCCc
Q 003222 658 SAIAAAHGLNIHPRDLALLCQKVENHIVGAPCGVMDQMASACGEANKLLAMVCQPAELLGVVEIPSHIRFWGIDSGIRHS 737 (838)
Q Consensus 658 ~al~~l~~~~l~~~ela~~a~~~E~~~~G~~~G~mDq~a~~~G~~~~~l~~d~~~~~~~~~v~~~~~~~~vi~~s~~~~~ 737 (838)
.|++.+++.++++.+++++|+.+|+.++|.+|| +|++++.+||. +++... .+++.+ ++.+++++|+.+++
T Consensus 102 ~al~~~~~~~l~~~~l~~la~~~E~~~~G~~sg-~D~~~~~~Gg~---~~~~~~-----~~l~~~-~~~~vl~~~~~~~s 171 (302)
T PRK03926 102 GALNRLLGLGLSLEEIAKLGHKVELLVQGAASP-TDTYVSTMGGF---VTIPDR-----KKLPFP-ECGIVVGYTGSSGS 171 (302)
T ss_pred HHHHHHhCCCCCHHHHHHHHHHHHHHHcCCCch-HHHHHHhcCCe---EEEcCC-----CcCCCC-CceEEEEECCCCCc
Confidence 999999999999999999999999999999999 69999999994 333211 133433 67789999999887
Q ss_pred C
Q 003222 738 V 738 (838)
Q Consensus 738 ~ 738 (838)
+
T Consensus 172 T 172 (302)
T PRK03926 172 T 172 (302)
T ss_pred H
Confidence 5
|
|
| >PLN03007 UDP-glucosyltransferase family protein | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.8e-21 Score=223.32 Aligned_cols=344 Identities=14% Similarity=0.127 Sum_probs=191.8
Q ss_pred EEEEeecCCCcccHHHHHHHHHHHHHCCCeEEEEeCCCCc-ccccccC-----CCc--eeeeeeccC---CCcccc-ccc
Q 003222 17 VFAYYVTGHGFGHATRVVEVVRNLISAGHDVHVVTGAPDF-VFTSEIQ-----SPR--LFIRKVLLD---CGAVQA-DAL 84 (838)
Q Consensus 17 ~Il~~v~g~G~GHv~r~laLA~~L~~~Gh~V~~v~~~~~~-~~~~~i~-----~~~--~~~~~~~~~---~g~~~~-~~~ 84 (838)
+|++ ++.+|.||++|++.||+.|..+|++|||++..... .+..... .+. +.+...... .|+... ...
T Consensus 7 hVvl-vp~pa~GHi~P~L~LAk~L~~rG~~VT~vtt~~~~~~i~~~~a~~~~~~~~~~~~~~~~~~p~~~~glP~g~e~~ 85 (482)
T PLN03007 7 HILF-FPFMAHGHMIPTLDMAKLFSSRGAKSTILTTPLNAKIFEKPIEAFKNLNPGLEIDIQIFNFPCVELGLPEGCENV 85 (482)
T ss_pred EEEE-ECCCccccHHHHHHHHHHHHhCCCEEEEEECCCchhhhhhhhhhhcccCCCCcceEEEeeCCCCcCCCCCCcccc
Confidence 4433 57889999999999999999999999999875311 1111100 000 011111000 111100 000
Q ss_pred c----cChHHHHHHHHHHhhccHHHHHHHHHHHHhcCCCcEEEECC-CchHHHHHHHhCCcEEEEecCc-hh-----HHH
Q 003222 85 T----VDRLASLEKYSETAVAPRKSILKDEVEWLNSIKADLVVSDV-VPVACRAAADAGIRSVCVTNFS-WD-----FIY 153 (838)
Q Consensus 85 ~----~~~~~~l~~~~~~~~~~~~~~l~~~~~~L~~~kPDlVVsD~-~~~~~~aA~~lgIP~V~is~~~-~~-----~i~ 153 (838)
. .+..... .+...+......+.....++++..+||+||+|. .+|+..+|+.+|||.+.+...+ +. ..+
T Consensus 86 ~~~~~~~~~~~~-~~~~~~~~~~~~l~~~l~~~l~~~~~~~IV~D~~~~w~~~vA~~lgIP~v~f~~~~a~~~~~~~~~~ 164 (482)
T PLN03007 86 DFITSNNNDDSG-DLFLKFLFSTKYFKDQLEKLLETTRPDCLVADMFFPWATEAAEKFGVPRLVFHGTGYFSLCASYCIR 164 (482)
T ss_pred cccccccccchH-HHHHHHHHHHHHHHHHHHHHHhcCCCCEEEECCcchhHHHHHHHhCCCeEEeecccHHHHHHHHHHH
Confidence 0 0000000 111111111223444456677778999999996 8899999999999998763211 00 000
Q ss_pred Hhh-------------hhhccc-------------chHHHHH---HHHhhccccceEEecCCCC-------CCCC-C-Cc
Q 003222 154 AEY-------------VMAAGH-------------HHRSIVW---QIAEDYSHCEFLIRLPGYC-------PMPA-F-RD 195 (838)
Q Consensus 154 ~~~-------------~~~~~~-------------~~~~i~~---~l~~~y~~~d~ll~~~~~~-------~~p~-~-~~ 195 (838)
..+ .+..+. ....+.. .+.+....++.++.-++.. .... . ..
T Consensus 165 ~~~~~~~~~~~~~~~~~pg~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~Nt~~~le~~~~~~~~~~~~~~ 244 (482)
T PLN03007 165 VHKPQKKVASSSEPFVIPDLPGDIVITEEQINDADEESPMGKFMKEVRESEVKSFGVLVNSFYELESAYADFYKSFVAKR 244 (482)
T ss_pred hcccccccCCCCceeeCCCCCCccccCHHhcCCCCCchhHHHHHHHHHhhcccCCEEEEECHHHHHHHHHHHHHhccCCC
Confidence 000 111100 0000111 1111122222222211100 0111 1 24
Q ss_pred eeecCccccc----------CC---cChHHHHHHhCCCCCCcEEEEEcCCCCch-----hhhHHhhCCCCcEEEE-eCCC
Q 003222 196 VIDVPLVVRR----------LH---KSRKEVRKELGIEDDVKLLILNFGGQPAG-----WKLKEEYLPSGWKCLV-CGAS 256 (838)
Q Consensus 196 v~~ip~~~~~----------~~---~~~~~~r~~l~~~~~~~~Vlvs~Gs~~~~-----~~ll~~l~~~~~~~vv-~G~~ 256 (838)
+..|||+... .+ ..++++.+|++..+++++|||||||.... .++...+...++.|++ ++..
T Consensus 245 ~~~VGPl~~~~~~~~~~~~~~~~~~~~~~~~~~wLd~~~~~svvyvsfGS~~~~~~~~~~~~~~~l~~~~~~flw~~~~~ 324 (482)
T PLN03007 245 AWHIGPLSLYNRGFEEKAERGKKANIDEQECLKWLDSKKPDSVIYLSFGSVASFKNEQLFEIAAGLEGSGQNFIWVVRKN 324 (482)
T ss_pred EEEEccccccccccccccccCCccccchhHHHHHHhcCCCCceEEEeecCCcCCCHHHHHHHHHHHHHCCCCEEEEEecC
Confidence 6778885321 10 12356788888766788999999998642 2333344444554333 3321
Q ss_pred -C-----CCC---------CCCeEECCCCCCHH--HHHhhc--CEEEecCChhhHHHHHHcCCcEEEEeCCCCCChHHHH
Q 003222 257 -D-----SQL---------PPNFIKLPKDAYTP--DFMAAS--DCMLGKIGYGTVSEALAYKLPFVFVRRDYFNEEPFLR 317 (838)
Q Consensus 257 -~-----~~l---------p~nv~~~~~~~~~p--dlLa~a--dl~It~gG~~Tv~Eal~~GvP~l~iP~~~~~EQ~~Na 317 (838)
. ..+ +.|+.+. .|+| ++|+|+ .+||||||+||++||+++|||||++| .+.||+.||
T Consensus 325 ~~~~~~~~~lp~~~~~r~~~~g~~v~---~w~PQ~~iL~h~~v~~fvtH~G~nS~~Eal~~GVP~v~~P--~~~DQ~~na 399 (482)
T PLN03007 325 ENQGEKEEWLPEGFEERTKGKGLIIR---GWAPQVLILDHQATGGFVTHCGWNSLLEGVAAGLPMVTWP--VGAEQFYNE 399 (482)
T ss_pred CcccchhhcCCHHHHHHhccCCEEEe---cCCCHHHHhccCccceeeecCcchHHHHHHHcCCCeeecc--chhhhhhhH
Confidence 0 013 4466664 4777 899985 56999999999999999999999999 899999999
Q ss_pred HHHH---HcCcEEEE------ecCCCChhhHHHHHHHHhhCCCCccCCCCHHHHHHHHHHHHhc
Q 003222 318 NMLE---FYQGGVEM------IRRDLLTGHWKPYLERAISLKPCYEGGINGGEVAAHILQETAI 372 (838)
Q Consensus 318 ~~l~---~~G~g~~l------~~~~~~~~~l~~~l~~ll~~~~~~~~~~~g~~~~a~~i~~~~~ 372 (838)
++++ +.|+++.. +...++.+.+.++|++++.++ .....++.|..|.+.+.
T Consensus 400 ~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~l~~av~~~m~~~-----~~~~~r~~a~~~~~~a~ 458 (482)
T PLN03007 400 KLVTQVLRTGVSVGAKKLVKVKGDFISREKVEKAVREVIVGE-----EAEERRLRAKKLAEMAK 458 (482)
T ss_pred HHHHHhhcceeEeccccccccccCcccHHHHHHHHHHHhcCc-----HHHHHHHHHHHHHHHHH
Confidence 9886 44555432 334578899999999999654 23455666666666553
|
|
| >PLN00414 glycosyltransferase family protein | Back alignment and domain information |
|---|
Probab=99.88 E-value=9.5e-21 Score=215.69 Aligned_cols=342 Identities=16% Similarity=0.152 Sum_probs=197.3
Q ss_pred ecCCCcccHHHHHHHHHHHHHCCCeEEEEeCCCCc-cccc-ccCCCceeeeeeccC--CCcccccccccChHHHHHHHHH
Q 003222 22 VTGHGFGHATRVVEVVRNLISAGHDVHVVTGAPDF-VFTS-EIQSPRLFIRKVLLD--CGAVQADALTVDRLASLEKYSE 97 (838)
Q Consensus 22 v~g~G~GHv~r~laLA~~L~~~Gh~V~~v~~~~~~-~~~~-~i~~~~~~~~~~~~~--~g~~~~~~~~~~~~~~l~~~~~ 97 (838)
++.++.||++|++.||+.|+.+|++|||++..... .... ....+.+.+...... .|+........+..... ..
T Consensus 10 vPfpaqGHi~PmL~LAk~Las~G~~VT~vtt~~~~~~i~~~~~~~~~i~~~~i~lP~~dGLP~g~e~~~~l~~~~---~~ 86 (446)
T PLN00414 10 YPWFGFGHMIPYLHLANKLAEKGHRVTFFLPKKAHKQLQPLNLFPDSIVFEPLTLPPVDGLPFGAETASDLPNST---KK 86 (446)
T ss_pred ecCcccchHHHHHHHHHHHHhCCCEEEEEeCCchhhhhcccccCCCceEEEEecCCCcCCCCCcccccccchhhH---HH
Confidence 57889999999999999999999999999865310 1111 000112333221100 12211000000111100 11
Q ss_pred HhhccHHHHHHHHHHHHhcCCCcEEEECCCchHHHHHHHhCCcEEEEecCc------hhHHHH--hh-hhhccc------
Q 003222 98 TAVAPRKSILKDEVEWLNSIKADLVVSDVVPVACRAAADAGIRSVCVTNFS------WDFIYA--EY-VMAAGH------ 162 (838)
Q Consensus 98 ~~~~~~~~~l~~~~~~L~~~kPDlVVsD~~~~~~~aA~~lgIP~V~is~~~------~~~i~~--~~-~~~~~~------ 162 (838)
.+......+.....++++..+||+||+|+.+|+..+|+.+|||.+.+...+ |..... .. .+..+.
T Consensus 87 ~~~~a~~~l~~~l~~~L~~~~p~cVV~D~~~wa~~vA~~lgIP~~~F~~~~a~~~~~~~~~~~~~~~~~pg~p~~~~~~~ 166 (446)
T PLN00414 87 PIFDAMDLLRDQIEAKVRALKPDLIFFDFVHWVPEMAKEFGIKSVNYQIISAACVAMVLAPRAELGFPPPDYPLSKVALR 166 (446)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCeEEEECCchhHHHHHHHhCCCEEEEecHHHHHHHHHhCcHhhcCCCCCCCCCCcCcCc
Confidence 111112223334456677789999999998899999999999998873322 100000 00 010110
Q ss_pred --c------hH---HHHHHHHhhccccceEEecCCCC-------CCC-CC-CceeecCcccccCC-----cChHHHHHHh
Q 003222 163 --H------HR---SIVWQIAEDYSHCEFLIRLPGYC-------PMP-AF-RDVIDVPLVVRRLH-----KSRKEVRKEL 217 (838)
Q Consensus 163 --~------~~---~i~~~l~~~y~~~d~ll~~~~~~-------~~p-~~-~~v~~ip~~~~~~~-----~~~~~~r~~l 217 (838)
. +. .......+....++-++.-++.. .+. .. ++++.|||+..... ....++.+||
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~~~~~~~~~v~~VGPl~~~~~~~~~~~~~~~~~~WL 246 (446)
T PLN00414 167 GHDANVCSLFANSHELFGLITKGLKNCDVVSIRTCVELEGNLCDFIERQCQRKVLLTGPMLPEPQNKSGKPLEDRWNHWL 246 (446)
T ss_pred hhhcccchhhcccHHHHHHHHHhhccCCEEEEechHHHHHHHHHHHHHhcCCCeEEEcccCCCcccccCcccHHHHHHHH
Confidence 0 00 00001112222333333222211 000 11 35778888753211 1124577899
Q ss_pred CCCCCCcEEEEEcCCCCch--hhhHH---hhCCCCc--EEEEe---CCCC--CCCCCCeEEC----CC--CCCHH--HHH
Q 003222 218 GIEDDVKLLILNFGGQPAG--WKLKE---EYLPSGW--KCLVC---GASD--SQLPPNFIKL----PK--DAYTP--DFM 277 (838)
Q Consensus 218 ~~~~~~~~Vlvs~Gs~~~~--~~ll~---~l~~~~~--~~vv~---G~~~--~~lp~nv~~~----~~--~~~~p--dlL 277 (838)
+..+++++|||||||.... .++.+ .|...+. .+++- |... ..+|+|+... +. ..|+| ++|
T Consensus 247 D~q~~~sVvyvsfGS~~~~~~~q~~e~a~gL~~s~~~Flwvvr~~~~~~~~~~~lp~~f~~r~~~~g~vv~~w~PQ~~vL 326 (446)
T PLN00414 247 NGFEPGSVVFCAFGTQFFFEKDQFQEFCLGMELTGLPFLIAVMPPKGSSTVQEALPEGFEERVKGRGIVWEGWVEQPLIL 326 (446)
T ss_pred hcCCCCceEEEeecccccCCHHHHHHHHHHHHHcCCCeEEEEecCCCcccchhhCChhHHHHhcCCCeEEeccCCHHHHh
Confidence 9888889999999998752 33433 3333343 33332 1111 1256665311 11 25888 799
Q ss_pred hhc--CEEEecCChhhHHHHHHcCCcEEEEeCCCCCChHHHHHHHH-HcCcEEEEecC---CCChhhHHHHHHHHhhCCC
Q 003222 278 AAS--DCMLGKIGYGTVSEALAYKLPFVFVRRDYFNEEPFLRNMLE-FYQGGVEMIRR---DLLTGHWKPYLERAISLKP 351 (838)
Q Consensus 278 a~a--dl~It~gG~~Tv~Eal~~GvP~l~iP~~~~~EQ~~Na~~l~-~~G~g~~l~~~---~~~~~~l~~~l~~ll~~~~ 351 (838)
+|+ ++||||||+||++|++++|||||++| .+.||+.||++++ +.|+|+.+... .++.+.+++++++++.++.
T Consensus 327 ~h~~v~~fvtH~G~nS~~Ea~~~GvP~l~~P--~~~dQ~~na~~~~~~~g~g~~~~~~~~~~~~~~~i~~~v~~~m~~~~ 404 (446)
T PLN00414 327 SHPSVGCFVNHCGFGSMWESLVSDCQIVFIP--QLADQVLITRLLTEELEVSVKVQREDSGWFSKESLRDTVKSVMDKDS 404 (446)
T ss_pred cCCccceEEecCchhHHHHHHHcCCCEEecC--cccchHHHHHHHHHHhCeEEEeccccCCccCHHHHHHHHHHHhcCCh
Confidence 875 88999999999999999999999999 7999999999995 78999999643 3788999999999996531
Q ss_pred CccCCCCHHHHHHHHHHHHh
Q 003222 352 CYEGGINGGEVAAHILQETA 371 (838)
Q Consensus 352 ~~~~~~~g~~~~a~~i~~~~ 371 (838)
......++.|..|.+.+
T Consensus 405 ---e~g~~~r~~a~~~~~~~ 421 (446)
T PLN00414 405 ---EIGNLVKRNHKKLKETL 421 (446)
T ss_pred ---hhHHHHHHHHHHHHHHH
Confidence 01233566666776664
|
|
| >PLN02210 UDP-glucosyl transferase | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.5e-20 Score=215.03 Aligned_cols=334 Identities=14% Similarity=0.146 Sum_probs=194.9
Q ss_pred EEEEEeecCCCcccHHHHHHHHHH--HHHCCCeEEEEeCCCCc-cccccc-CCCceeeeeeccCCCcccccccccChHHH
Q 003222 16 LVFAYYVTGHGFGHATRVVEVVRN--LISAGHDVHVVTGAPDF-VFTSEI-QSPRLFIRKVLLDCGAVQADALTVDRLAS 91 (838)
Q Consensus 16 ~~Il~~v~g~G~GHv~r~laLA~~--L~~~Gh~V~~v~~~~~~-~~~~~i-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 91 (838)
.+|++ ++.++.||++|++.||+. |..+|+.|||++..... ...... ....+.+... ..|+... ...+..
T Consensus 9 ~hvv~-~P~pa~GHi~P~l~La~~L~L~~~G~~VT~v~t~~~~~~~~~~~~~~~~~~~~~~--~~glp~~--~~~~~~-- 81 (456)
T PLN02210 9 THVLM-VTLAFQGHINPMLKLAKHLSLSSKNLHFTLATTEQARDLLSTVEKPRRPVDLVFF--SDGLPKD--DPRAPE-- 81 (456)
T ss_pred CEEEE-eCCcccccHHHHHHHHHHHHhhcCCcEEEEEeccchhhhhccccCCCCceEEEEC--CCCCCCC--cccCHH--
Confidence 34533 578899999999999999 55899999999875311 111100 0112333221 1122210 001111
Q ss_pred HHHHHHHhhccHHHHHHHHHHHHhcCCCcEEEECC-CchHHHHHHHhCCcEEEEecCch-hH-HHHhh------------
Q 003222 92 LEKYSETAVAPRKSILKDEVEWLNSIKADLVVSDV-VPVACRAAADAGIRSVCVTNFSW-DF-IYAEY------------ 156 (838)
Q Consensus 92 l~~~~~~~~~~~~~~l~~~~~~L~~~kPDlVVsD~-~~~~~~aA~~lgIP~V~is~~~~-~~-i~~~~------------ 156 (838)
.+...+ .........+++++.+||+||+|+ .+|+..+|+.+|||.+.+...+. .+ .+..+
T Consensus 82 --~~~~~~---~~~~~~~l~~~l~~~~~~~vI~D~~~~w~~~vA~~lgIP~~~f~~~sa~~~~~~~~~~~~~~~~~~~~~ 156 (456)
T PLN02210 82 --TLLKSL---NKVGAKNLSKIIEEKRYSCIISSPFTPWVPAVAAAHNIPCAILWIQACGAYSVYYRYYMKTNSFPDLED 156 (456)
T ss_pred --HHHHHH---HHhhhHHHHHHHhcCCCcEEEECCcchhHHHHHHHhCCCEEEEecccHHHHHHHHhhhhccCCCCcccc
Confidence 111111 111223345667777899999996 88999999999999987622110 00 00000
Q ss_pred ------hhhccc-c---------------hHHHHHHHHhhccccceEEecCCCCC-------CCCCCceeecCccccc--
Q 003222 157 ------VMAAGH-H---------------HRSIVWQIAEDYSHCEFLIRLPGYCP-------MPAFRDVIDVPLVVRR-- 205 (838)
Q Consensus 157 ------~~~~~~-~---------------~~~i~~~l~~~y~~~d~ll~~~~~~~-------~p~~~~v~~ip~~~~~-- 205 (838)
++..+. . +......+......++.++.-++... ....++++.|||....
T Consensus 157 ~~~~~~~Pgl~~~~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~l~~~~~v~~VGPl~~~~~ 236 (456)
T PLN02210 157 LNQTVELPALPLLEVRDLPSFMLPSGGAHFNNLMAEFADCLRYVKWVLVNSFYELESEIIESMADLKPVIPIGPLVSPFL 236 (456)
T ss_pred cCCeeeCCCCCCCChhhCChhhhcCCchHHHHHHHHHHHhcccCCEEEEeCHHHHhHHHHHHHhhcCCEEEEcccCchhh
Confidence 110000 0 00111111112222333332222110 0112467888886521
Q ss_pred --CC-------------cChHHHHHHhCCCCCCcEEEEEcCCCCch-h----hhHHhhCCCCcEEEE-eCCCC-C-C---
Q 003222 206 --LH-------------KSRKEVRKELGIEDDVKLLILNFGGQPAG-W----KLKEEYLPSGWKCLV-CGASD-S-Q--- 259 (838)
Q Consensus 206 --~~-------------~~~~~~r~~l~~~~~~~~Vlvs~Gs~~~~-~----~ll~~l~~~~~~~vv-~G~~~-~-~--- 259 (838)
.. ...+++.+|++..+++++|||||||.... . ++...+...++.|++ ++... . .
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~wld~~~~~svvyvsfGS~~~~~~~~~~e~a~~l~~~~~~flw~~~~~~~~~~~~~ 316 (456)
T PLN02210 237 LGDDEEETLDGKNLDMCKSDDCCMEWLDKQARSSVVYISFGSMLESLENQVETIAKALKNRGVPFLWVIRPKEKAQNVQV 316 (456)
T ss_pred cCcccccccccccccccccchHHHHHHhCCCCCceEEEEecccccCCHHHHHHHHHHHHhCCCCEEEEEeCCccccchhh
Confidence 00 01234567887666788999999998642 2 333345455555443 33211 0 1
Q ss_pred ----C-CCCeEECCCCCCHH--HHHhhcC--EEEecCChhhHHHHHHcCCcEEEEeCCCCCChHHHHHHHHH-cCcEEEE
Q 003222 260 ----L-PPNFIKLPKDAYTP--DFMAASD--CMLGKIGYGTVSEALAYKLPFVFVRRDYFNEEPFLRNMLEF-YQGGVEM 329 (838)
Q Consensus 260 ----l-p~nv~~~~~~~~~p--dlLa~ad--l~It~gG~~Tv~Eal~~GvP~l~iP~~~~~EQ~~Na~~l~~-~G~g~~l 329 (838)
. +++..+. .|+| ++|+|++ +||||||+||++|++++|||||++| .+.||+.||+++++ .|+|+.+
T Consensus 317 ~~~~~~~~~g~v~---~w~PQ~~iL~h~~vg~FitH~G~nS~~Eai~~GVP~v~~P--~~~DQ~~na~~~~~~~g~G~~l 391 (456)
T PLN02210 317 LQEMVKEGQGVVL---EWSPQEKILSHMAISCFVTHCGWNSTIETVVAGVPVVAYP--SWTDQPIDARLLVDVFGIGVRM 391 (456)
T ss_pred HHhhccCCCeEEE---ecCCHHHHhcCcCcCeEEeeCCcccHHHHHHcCCCEEecc--cccccHHHHHHHHHHhCeEEEE
Confidence 1 2444443 5777 7998865 9999999999999999999999999 79999999999987 8999998
Q ss_pred ecC----CCChhhHHHHHHHHhhCCCCccCCCCHHHHHHHHHHHHh
Q 003222 330 IRR----DLLTGHWKPYLERAISLKPCYEGGINGGEVAAHILQETA 371 (838)
Q Consensus 330 ~~~----~~~~~~l~~~l~~ll~~~~~~~~~~~g~~~~a~~i~~~~ 371 (838)
... .++.+.+.+++++++.++ .....++-|..|.+.+
T Consensus 392 ~~~~~~~~~~~~~l~~av~~~m~~~-----~g~~~r~~a~~l~~~a 432 (456)
T PLN02210 392 RNDAVDGELKVEEVERCIEAVTEGP-----AAADIRRRAAELKHVA 432 (456)
T ss_pred eccccCCcCCHHHHHHHHHHHhcCc-----hHHHHHHHHHHHHHHH
Confidence 642 478899999999998654 2234455666666654
|
|
| >COG1577 ERG12 Mevalonate kinase [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=99.88 E-value=5.2e-22 Score=211.90 Aligned_cols=184 Identities=26% Similarity=0.326 Sum_probs=141.2
Q ss_pred EEEccccccccccccccCCCeeeccccccceEEEEEEcCCccchhhhhhhhccCCCCCCCCCeEEEEecccccCCCCCce
Q 003222 499 VARAPGRLDVMGGIADYSGSLVLQMPIREACHVALQKISPSKQRLWKHALARHNDKGQGPMPVLQIVSYGSELSNRGPTF 578 (838)
Q Consensus 499 ~~~APGRv~L~GeH~Dy~gg~vl~~ai~~~~~v~~~~~~d~~~~l~~~~~~~~~~~~~~~~~~i~i~s~~~~~~~~~~~~ 578 (838)
.++|||++.|+|||++++|.+++++||++++++.++..++.++. +.+.+
T Consensus 2 ~~~aPgKliL~GEHAVVyG~pAI~~aI~~~~~v~~~~s~~~~~~---------------------i~~~~---------- 50 (307)
T COG1577 2 SVSAPGKLILFGEHAVVYGYPAIAAAIDLRVTVTISESDSNKIV---------------------IESSD---------- 50 (307)
T ss_pred cccccccEEEEecceeeeCCchhheeeeeeEEEEEEecCCCcEE---------------------EeccC----------
Confidence 46899999999999999999999999999999999988764432 22211
Q ss_pred eccCCccccCCCCcchhhhhcccCCCCCCChhHHHHHHHHHHHHHhCCCCCCCEEEEEEeCCCCCCCCChHHHHHHHHHH
Q 003222 579 DMDLSDFMDEGKPMSYEKAKKYFDTNPSQKWAAYVAGTILVLMTELGVRFEDSISMLVSSAVPEGKGVSSSASVEVASMS 658 (838)
Q Consensus 579 ~~~l~~~~~~~~p~~~~~~~~~~~~~~~~~w~~y~~g~i~~~~~~~g~~~~~g~~i~i~s~iP~g~GLgSSAA~~va~~~ 658 (838)
++-+. ++. +. + ..|+..++..+....+.....+|++.|.|+||+|+|||||||+.||++.
T Consensus 51 -~~~~~-------~~~---------~~--~-~~~~~~~v~~~~e~~~~~~~~~~~l~I~S~iP~g~GLGSSAAVsva~i~ 110 (307)
T COG1577 51 -LKSST-------LER---------DE--D-EGYIQAAVRLASELLNQSSLKPFSLEIDSEIPIGAGLGSSAAVSVAVIK 110 (307)
T ss_pred -CCCcc-------ccc---------cc--c-chHHHHHHHHHHHHhcccCCCCeEEEEecCCCCCCCccHHHHHHHHHHH
Confidence 00000 100 00 1 2677766665543333212369999999999999999999999999999
Q ss_pred HHHHHhCCCCCHHHHHHHHHHHHhhhcCCCCChhhHHHhhcCCCCeEEEEEecCCceeeeeccCCCeEEEEEeCCCCCcC
Q 003222 659 AIAAAHGLNIHPRDLALLCQKVENHIVGAPCGVMDQMASACGEANKLLAMVCQPAELLGVVEIPSHIRFWGIDSGIRHSV 738 (838)
Q Consensus 659 al~~l~~~~l~~~ela~~a~~~E~~~~G~~~G~mDq~a~~~G~~~~~l~~d~~~~~~~~~v~~~~~~~~vi~~s~~~~~~ 738 (838)
|++.+||..++++++++++.++|+.++|.+|| +|.++|++|| ++++..+ ... +++.++..-.|+|.|||+++++
T Consensus 111 al~~~~g~~ls~~~l~~la~~~e~~vqG~~Sg-~D~a~~~~gg---~v~~~~~-~~~-~~l~~~~~~~~~I~~tg~~~sT 184 (307)
T COG1577 111 ALSAYFGVELSPEELAKLANKVELIVQGKASG-IDIATITYGG---LVAFKKG-FDF-EKLEIELLGTLVIGDTGVPGST 184 (307)
T ss_pred HHHHhcCCCCCHHHHHHHHHHHHHHHcCCCCc-ccceEEEeCC---EEEEecC-CCc-cccccccCCeEEEEEcCCcCcH
Confidence 99999999999999999999999999999999 7999999999 4666542 122 4555543337899999999986
Q ss_pred C
Q 003222 739 G 739 (838)
Q Consensus 739 ~ 739 (838)
.
T Consensus 185 ~ 185 (307)
T COG1577 185 K 185 (307)
T ss_pred H
Confidence 4
|
|
| >PLN02670 transferase, transferring glycosyl groups | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.6e-20 Score=212.61 Aligned_cols=343 Identities=13% Similarity=0.138 Sum_probs=195.6
Q ss_pred ecCCCcccHHHHHHHHHHHHHCCCeEEEEeCCCCc-cccccc--CCCceeeeeeccC--CCcccccccccChHHHHHHHH
Q 003222 22 VTGHGFGHATRVVEVVRNLISAGHDVHVVTGAPDF-VFTSEI--QSPRLFIRKVLLD--CGAVQADALTVDRLASLEKYS 96 (838)
Q Consensus 22 v~g~G~GHv~r~laLA~~L~~~Gh~V~~v~~~~~~-~~~~~i--~~~~~~~~~~~~~--~g~~~~~~~~~~~~~~l~~~~ 96 (838)
++.++.||++|++.||+.|+.+|..|||++..... ...... ..+.+.+...... .|+........+.......+.
T Consensus 12 ~P~paqGHi~P~l~LAk~La~~G~~vT~v~t~~n~~~~~~~~~~~~~~i~~~~lp~p~~dglp~~~~~~~~~~~~~~~~~ 91 (472)
T PLN02670 12 FPWLAMGHLIPFLRLSKLLAQKGHKISFISTPRNLHRLPKIPSQLSSSITLVSFPLPSVPGLPSSAESSTDVPYTKQQLL 91 (472)
T ss_pred eCChhhhHHHHHHHHHHHHHhCCCEEEEEeCCchHHhhhhccccCCCCeeEEECCCCccCCCCCCcccccccchhhHHHH
Confidence 58899999999999999999999999999765311 111100 0112333332110 122110000011110000011
Q ss_pred HHhhccHHHHHHHHHHHHhcCCCcEEEECC-CchHHHHHHHhCCcEEEEecCch-h-HHHH----------------hh-
Q 003222 97 ETAVAPRKSILKDEVEWLNSIKADLVVSDV-VPVACRAAADAGIRSVCVTNFSW-D-FIYA----------------EY- 156 (838)
Q Consensus 97 ~~~~~~~~~~l~~~~~~L~~~kPDlVVsD~-~~~~~~aA~~lgIP~V~is~~~~-~-~i~~----------------~~- 156 (838)
.. ....+.....+++++.+|++||+|. .+|+...|+.+|||.+.+...+- . ..+. ..
T Consensus 92 ~~---~~~~~~~~~~~~l~~~~~~cvI~D~f~~wa~~vA~~~gIP~~~f~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (472)
T PLN02670 92 KK---AFDLLEPPLTTFLETSKPDWIIYDYASHWLPSIAAELGISKAFFSLFTAATLSFIGPPSSLMEGGDLRSTAEDFT 168 (472)
T ss_pred HH---HHHHhHHHHHHHHHhCCCcEEEECCcchhHHHHHHHcCCCEEEEehhhHHHHHHHhhhHhhhhcccCCCcccccc
Confidence 00 1111223335567777899999996 88999999999999988743220 0 0000 00
Q ss_pred -hhhc-c-c--------chHHHH----------HHHH---hhccccceEEecCCCC-------CC-CCC-CceeecCccc
Q 003222 157 -VMAA-G-H--------HHRSIV----------WQIA---EDYSHCEFLIRLPGYC-------PM-PAF-RDVIDVPLVV 203 (838)
Q Consensus 157 -~~~~-~-~--------~~~~i~----------~~l~---~~y~~~d~ll~~~~~~-------~~-p~~-~~v~~ip~~~ 203 (838)
.+.. + . ....+. .... .....++.++.-++.. .+ ..+ ++++.|||+.
T Consensus 169 ~~p~~~P~~~~~~~~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~~gvlvNTf~eLE~~~l~~l~~~~~~~v~~VGPl~ 248 (472)
T PLN02670 169 VVPPWVPFESNIVFRYHEVTKYVEKTEEDETGPSDSVRFGFAIGGSDVVIIRSSPEFEPEWFDLLSDLYRKPIIPIGFLP 248 (472)
T ss_pred CCCCcCCCCccccccHHHhhHHHhccCccchHHHHHHHHHhhcccCCEEEEeCHHHHhHHHHHHHHHhhCCCeEEEecCC
Confidence 0000 0 0 000000 0000 0111222222211111 00 011 3577888874
Q ss_pred cc--C--C-c--Ch---HHHHHHhCCCCCCcEEEEEcCCCCc-h----hhhHHhhCCCCcEEEE-eCC--CC-----CCC
Q 003222 204 RR--L--H-K--SR---KEVRKELGIEDDVKLLILNFGGQPA-G----WKLKEEYLPSGWKCLV-CGA--SD-----SQL 260 (838)
Q Consensus 204 ~~--~--~-~--~~---~~~r~~l~~~~~~~~Vlvs~Gs~~~-~----~~ll~~l~~~~~~~vv-~G~--~~-----~~l 260 (838)
.. . . . .. +++.+||+..+++++|||||||+.. . .++...+...+..|++ +.. .. ..+
T Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~wLd~~~~~sVvyvsfGS~~~l~~~q~~ela~gl~~s~~~FlWv~r~~~~~~~~~~~~l 328 (472)
T PLN02670 249 PVIEDDEEDDTIDVKGWVRIKEWLDKQRVNSVVYVALGTEASLRREEVTELALGLEKSETPFFWVLRNEPGTTQNALEML 328 (472)
T ss_pred ccccccccccccccchhHHHHHHHhcCCCCceEEEEecccccCCHHHHHHHHHHHHHCCCCEEEEEcCCcccccchhhcC
Confidence 31 1 0 0 11 4577899877678999999999864 2 2233344333333332 221 11 125
Q ss_pred CCC---------eEECCCCCCHH--HHHhh--cCEEEecCChhhHHHHHHcCCcEEEEeCCCCCChHHHHHHHHHcCcEE
Q 003222 261 PPN---------FIKLPKDAYTP--DFMAA--SDCMLGKIGYGTVSEALAYKLPFVFVRRDYFNEEPFLRNMLEFYQGGV 327 (838)
Q Consensus 261 p~n---------v~~~~~~~~~p--dlLa~--adl~It~gG~~Tv~Eal~~GvP~l~iP~~~~~EQ~~Na~~l~~~G~g~ 327 (838)
|+| +.+ ..|+| ++|+| +.+||||||+||++|++++|||||++| .+.||+.||+++++.|+|+
T Consensus 329 p~~f~~~~~~rG~vv---~~W~PQ~~IL~H~~v~~FvtHcGwnS~~Eai~~GVP~l~~P--~~~DQ~~Na~~v~~~g~Gv 403 (472)
T PLN02670 329 PDGFEERVKGRGMIH---VGWVPQVKILSHESVGGFLTHCGWNSVVEGLGFGRVLILFP--VLNEQGLNTRLLHGKKLGL 403 (472)
T ss_pred ChHHHHhccCCCeEE---eCcCCHHHHhcCcccceeeecCCcchHHHHHHcCCCEEeCc--chhccHHHHHHHHHcCeeE
Confidence 655 333 25888 89977 666999999999999999999999999 8999999999999999999
Q ss_pred EEecC----CCChhhHHHHHHHHhhCCC--Ccc----------CCCCHHHHHHHHHHHHhc
Q 003222 328 EMIRR----DLLTGHWKPYLERAISLKP--CYE----------GGINGGEVAAHILQETAI 372 (838)
Q Consensus 328 ~l~~~----~~~~~~l~~~l~~ll~~~~--~~~----------~~~~g~~~~a~~i~~~~~ 372 (838)
.+... .++.+.+.++|++++.+++ .|+ ....++.++|+.+++++.
T Consensus 404 ~l~~~~~~~~~~~e~i~~av~~vm~~~~g~~~r~~a~~l~~~~~~~~~~~~~~~~~~~~l~ 464 (472)
T PLN02670 404 EVPRDERDGSFTSDSVAESVRLAMVDDAGEEIRDKAKEMRNLFGDMDRNNRYVDELVHYLR 464 (472)
T ss_pred EeeccccCCcCcHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHhCcchhHHHHHHHHHHHH
Confidence 99753 3788999999999997642 121 345555556666655543
|
|
| >PLN02173 UDP-glucosyl transferase family protein | Back alignment and domain information |
|---|
Probab=99.87 E-value=7.6e-20 Score=207.78 Aligned_cols=331 Identities=13% Similarity=0.142 Sum_probs=190.9
Q ss_pred ecCCCcccHHHHHHHHHHHHHCCCeEEEEeCCCCc-ccccccCCCceeeeeeccCCCccccc-ccccChHHHHHHHHHHh
Q 003222 22 VTGHGFGHATRVVEVVRNLISAGHDVHVVTGAPDF-VFTSEIQSPRLFIRKVLLDCGAVQAD-ALTVDRLASLEKYSETA 99 (838)
Q Consensus 22 v~g~G~GHv~r~laLA~~L~~~Gh~V~~v~~~~~~-~~~~~i~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~l~~~~~~~ 99 (838)
++.++.||++|++.||+.|+.+|+.|||++..... ..... ..+.+.+... ..|+.... ....+....+..+..
T Consensus 11 ~P~paqGHi~P~l~lAk~La~~G~~vT~v~t~~~~~~~~~~-~~~~i~~~~i--pdglp~~~~~~~~~~~~~~~~~~~-- 85 (449)
T PLN02173 11 VPFPSQGHITPIRQFCKRLHSKGFKTTHTLTTFIFNTIHLD-PSSPISIATI--SDGYDQGGFSSAGSVPEYLQNFKT-- 85 (449)
T ss_pred ecCcccccHHHHHHHHHHHHcCCCEEEEEECCchhhhcccC-CCCCEEEEEc--CCCCCCcccccccCHHHHHHHHHH--
Confidence 57889999999999999999999999999775211 11110 1123444442 12332100 000011111111111
Q ss_pred hccHHHHHHHHHHHHhc----CCC-cEEEECC-CchHHHHHHHhCCcEEEEecCc---hhHHHH-h-------h-hhhcc
Q 003222 100 VAPRKSILKDEVEWLNS----IKA-DLVVSDV-VPVACRAAADAGIRSVCVTNFS---WDFIYA-E-------Y-VMAAG 161 (838)
Q Consensus 100 ~~~~~~~l~~~~~~L~~----~kP-DlVVsD~-~~~~~~aA~~lgIP~V~is~~~---~~~i~~-~-------~-~~~~~ 161 (838)
.......++|++ .+| ++||+|+ .+|+..+|+.+|||.+.+...+ ..-.+. . + .+..+
T Consensus 86 -----~~~~~~~~~l~~~~~~~~Pv~cvV~D~f~~Wa~dVA~elgIP~v~F~~~~a~~~~~~~~~~~~~~~~~~~~pg~p 160 (449)
T PLN02173 86 -----FGSKTVADIIRKHQSTDNPITCIVYDSFMPWALDLAREFGLAAAPFFTQSCAVNYINYLSYINNGSLTLPIKDLP 160 (449)
T ss_pred -----hhhHHHHHHHHHhhccCCCceEEEECCcchhHHHHHHHhCCCEEEEechHHHHHHHHHhHHhccCCccCCCCCCC
Confidence 112223344443 356 9999996 8899999999999998863311 000000 0 0 01000
Q ss_pred c--------------chHHHHHHH---HhhccccceEEecCCCCC-------CCCCCceeecCccccc--------C-C-
Q 003222 162 H--------------HHRSIVWQI---AEDYSHCEFLIRLPGYCP-------MPAFRDVIDVPLVVRR--------L-H- 207 (838)
Q Consensus 162 ~--------------~~~~i~~~l---~~~y~~~d~ll~~~~~~~-------~p~~~~v~~ip~~~~~--------~-~- 207 (838)
. ..+.....+ ......++-++.-++... +....++..|||+... . .
T Consensus 161 ~l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~~~~~~~v~~VGPl~~~~~~~~~~~~~~~ 240 (449)
T PLN02173 161 LLELQDLPTFVTPTGSHLAYFEMVLQQFTNFDKADFVLVNSFHDLDLHENELLSKVCPVLTIGPTVPSMYLDQQIKSDND 240 (449)
T ss_pred CCChhhCChhhcCCCCchHHHHHHHHHHhhhccCCEEEEeCHHHhhHHHHHHHHhcCCeeEEcccCchhhcccccccccc
Confidence 0 000011111 111223333332222110 0111357778887421 0 0
Q ss_pred --------cChHHHHHHhCCCCCCcEEEEEcCCCCc-hh----hhHHhhCCCCcEEEEe-CCC--CC-C----C-CCCeE
Q 003222 208 --------KSRKEVRKELGIEDDVKLLILNFGGQPA-GW----KLKEEYLPSGWKCLVC-GAS--DS-Q----L-PPNFI 265 (838)
Q Consensus 208 --------~~~~~~r~~l~~~~~~~~Vlvs~Gs~~~-~~----~ll~~l~~~~~~~vv~-G~~--~~-~----l-p~nv~ 265 (838)
...+.+.+||+..+.+++|||||||... .. ++...+....+.+++- +.. .+ . . +.|+.
T Consensus 241 ~~~~~~~~~~~~~c~~WLd~~~~~svvyvsfGS~~~~~~~~~~ela~gLs~~~flWvvr~~~~~~lp~~~~~~~~~~~~~ 320 (449)
T PLN02173 241 YDLNLFDLKEAALCTDWLDKRPQGSVVYIAFGSMAKLSSEQMEEIASAISNFSYLWVVRASEESKLPPGFLETVDKDKSL 320 (449)
T ss_pred ccccccccccchHHHHHHhcCCCCceEEEEecccccCCHHHHHHHHHHhcCCCEEEEEeccchhcccchHHHhhcCCceE
Confidence 0112467888877778899999999865 22 2333453333333332 111 11 1 1 46677
Q ss_pred ECCCCCCHH--HHHhh--cCEEEecCChhhHHHHHHcCCcEEEEeCCCCCChHHHHHHHHHc-CcEEEEecCC----CCh
Q 003222 266 KLPKDAYTP--DFMAA--SDCMLGKIGYGTVSEALAYKLPFVFVRRDYFNEEPFLRNMLEFY-QGGVEMIRRD----LLT 336 (838)
Q Consensus 266 ~~~~~~~~p--dlLa~--adl~It~gG~~Tv~Eal~~GvP~l~iP~~~~~EQ~~Na~~l~~~-G~g~~l~~~~----~~~ 336 (838)
+. +|+| ++|+| +.+||||||+||++|++++|||||++| .+.||+.|++++++. |+|+.+...+ ++.
T Consensus 321 i~---~W~PQ~~iL~H~~v~~FvtHcGwnS~~Eai~~GVP~l~~P--~~~DQ~~Na~~v~~~~g~Gv~v~~~~~~~~~~~ 395 (449)
T PLN02173 321 VL---KWSPQLQVLSNKAIGCFMTHCGWNSTMEGLSLGVPMVAMP--QWTDQPMNAKYIQDVWKVGVRVKAEKESGIAKR 395 (449)
T ss_pred Ee---CCCCHHHHhCCCccceEEecCccchHHHHHHcCCCEEecC--chhcchHHHHHHHHHhCceEEEeecccCCcccH
Confidence 64 5777 89988 559999999999999999999999999 899999999999865 9998886432 477
Q ss_pred hhHHHHHHHHhhCCCCccCCCCHHHHHHHHHHHHhc
Q 003222 337 GHWKPYLERAISLKPCYEGGINGGEVAAHILQETAI 372 (838)
Q Consensus 337 ~~l~~~l~~ll~~~~~~~~~~~g~~~~a~~i~~~~~ 372 (838)
+.+.+++++++.++ .....++.|..|.+.+.
T Consensus 396 e~v~~av~~vm~~~-----~~~~~r~~a~~~~~~a~ 426 (449)
T PLN02173 396 EEIEFSIKEVMEGE-----KSKEMKENAGKWRDLAV 426 (449)
T ss_pred HHHHHHHHHHhcCC-----hHHHHHHHHHHHHHHHH
Confidence 89999999999654 22345666666666543
|
|
| >PLN02448 UDP-glycosyltransferase family protein | Back alignment and domain information |
|---|
Probab=99.87 E-value=4.3e-20 Score=212.35 Aligned_cols=342 Identities=13% Similarity=0.118 Sum_probs=196.5
Q ss_pred CceEEEEEeecCCCcccHHHHHHHHHHHHHC--CCeEEEEeCCCCc-ccccccCCCceeeeeeccCCCcccccccccChH
Q 003222 13 SKHLVFAYYVTGHGFGHATRVVEVVRNLISA--GHDVHVVTGAPDF-VFTSEIQSPRLFIRKVLLDCGAVQADALTVDRL 89 (838)
Q Consensus 13 m~~~~Il~~v~g~G~GHv~r~laLA~~L~~~--Gh~V~~v~~~~~~-~~~~~i~~~~~~~~~~~~~~g~~~~~~~~~~~~ 89 (838)
..+.+|++ ++.++.||++|++.||+.|..+ ||.|||++..... ........+++.+.... .+.........+..
T Consensus 8 ~~~~hVvl-vp~pa~GHi~P~l~LA~~L~~~~~G~~VT~~~t~~~~~~i~~~~~~~gi~fv~lp--~~~p~~~~~~~~~~ 84 (459)
T PLN02448 8 TTSCHVVA-MPYPGRGHINPMMNLCKLLASRKPDILITFVVTEEWLGLIGSDPKPDNIRFATIP--NVIPSELVRAADFP 84 (459)
T ss_pred CCCcEEEE-ECCcccccHHHHHHHHHHHHcCCCCcEEEEEeCCchHhHhhccCCCCCEEEEECC--CCCCCccccccCHH
Confidence 33456654 4678899999999999999999 9999999875311 11111111234554421 11111000011221
Q ss_pred HHHHHHHHHhhccHHHHHHHHHHHHhcC--CCcEEEECC-CchHHHHHHHhCCcEEEEecCc------hhHHHH------
Q 003222 90 ASLEKYSETAVAPRKSILKDEVEWLNSI--KADLVVSDV-VPVACRAAADAGIRSVCVTNFS------WDFIYA------ 154 (838)
Q Consensus 90 ~~l~~~~~~~~~~~~~~l~~~~~~L~~~--kPDlVVsD~-~~~~~~aA~~lgIP~V~is~~~------~~~i~~------ 154 (838)
..+..+. ........+++++. ++|+||+|. .+|+..+|+.+|||.+.+.... |.....
T Consensus 85 ~~~~~~~-------~~~~~~~~~~l~~~~~~~~~VI~D~~~~wa~~vA~~lgIP~v~f~~~~a~~~~~~~~~~~~~~~~~ 157 (459)
T PLN02448 85 GFLEAVM-------TKMEAPFEQLLDRLEPPVTAIVADTYLFWAVGVGNRRNIPVASLWTMSATFFSVFYHFDLLPQNGH 157 (459)
T ss_pred HHHHHHH-------HHhHHHHHHHHHhcCCCcEEEEECCccHHHHHHHHHhCCCeEEEEhHHHHHHHHHHHhhhhhhccC
Confidence 1111111 11222334445543 679999995 8899999999999998874322 110000
Q ss_pred -h------------hhhhccc----chH--------HHHHHHHhh---ccccceEEecCCCCC-------C-CCC-Ccee
Q 003222 155 -E------------YVMAAGH----HHR--------SIVWQIAED---YSHCEFLIRLPGYCP-------M-PAF-RDVI 197 (838)
Q Consensus 155 -~------------~~~~~~~----~~~--------~i~~~l~~~---y~~~d~ll~~~~~~~-------~-p~~-~~v~ 197 (838)
. .++..+. ... ...+.+.+. ...++.++.-++... + ..+ ..+.
T Consensus 158 ~~~~~~~~~~~~~~~iPg~~~l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~l~~~~~~~~~ 237 (459)
T PLN02448 158 FPVELSESGEERVDYIPGLSSTRLSDLPPIFHGNSRRVLKRILEAFSWVPKAQYLLFTSFYELEAQAIDALKSKFPFPVY 237 (459)
T ss_pred CCCccccccCCccccCCCCCCCChHHCchhhcCCchHHHHHHHHHHhhcccCCEEEEccHHHhhHHHHHHHHhhcCCceE
Confidence 0 0110000 000 001111111 112222222111100 0 011 2456
Q ss_pred ecCccccc--CC-------c--ChHHHHHHhCCCCCCcEEEEEcCCCCch-----hhhHHhhCCCCcEEEEeCCCC-C--
Q 003222 198 DVPLVVRR--LH-------K--SRKEVRKELGIEDDVKLLILNFGGQPAG-----WKLKEEYLPSGWKCLVCGASD-S-- 258 (838)
Q Consensus 198 ~ip~~~~~--~~-------~--~~~~~r~~l~~~~~~~~Vlvs~Gs~~~~-----~~ll~~l~~~~~~~vv~G~~~-~-- 258 (838)
.|||.... .. . ...++.+|+...+++++|||||||.... .++...+...++.+++..... .
T Consensus 238 ~iGP~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~~~vvyvsfGs~~~~~~~~~~~~~~~l~~~~~~~lw~~~~~~~~~ 317 (459)
T PLN02448 238 PIGPSIPYMELKDNSSSSNNEDNEPDYFQWLDSQPEGSVLYVSLGSFLSVSSAQMDEIAAGLRDSGVRFLWVARGEASRL 317 (459)
T ss_pred EecCcccccccCCCccccccccchhHHHHHHcCCCCCceEEEeecccccCCHHHHHHHHHHHHhCCCCEEEEEcCchhhH
Confidence 67775421 00 1 1136778888766788999999998541 233445555566555432211 1
Q ss_pred -C-CCCCeEECCCCCCHH--HHHhhcC--EEEecCChhhHHHHHHcCCcEEEEeCCCCCChHHHHHHHHH-cCcEEEEec
Q 003222 259 -Q-LPPNFIKLPKDAYTP--DFMAASD--CMLGKIGYGTVSEALAYKLPFVFVRRDYFNEEPFLRNMLEF-YQGGVEMIR 331 (838)
Q Consensus 259 -~-lp~nv~~~~~~~~~p--dlLa~ad--l~It~gG~~Tv~Eal~~GvP~l~iP~~~~~EQ~~Na~~l~~-~G~g~~l~~ 331 (838)
+ .+.|+.+. +|+| ++|+|.+ +||||||+||++||+++|||||++| .+.||+.|++++++ .|+|+.+..
T Consensus 318 ~~~~~~~~~v~---~w~pQ~~iL~h~~v~~fvtHgG~nS~~eal~~GvP~l~~P--~~~DQ~~na~~v~~~~g~G~~~~~ 392 (459)
T PLN02448 318 KEICGDMGLVV---PWCDQLKVLCHSSVGGFWTHCGWNSTLEAVFAGVPMLTFP--LFWDQPLNSKLIVEDWKIGWRVKR 392 (459)
T ss_pred hHhccCCEEEe---ccCCHHHHhccCccceEEecCchhHHHHHHHcCCCEEecc--ccccchhhHHHHHHHhCceEEEec
Confidence 1 23577764 4777 8998855 5999999999999999999999999 78999999999987 588888753
Q ss_pred -----CCCChhhHHHHHHHHhhCCCCccCCCCHHHHHHHHHHHHhc
Q 003222 332 -----RDLLTGHWKPYLERAISLKPCYEGGINGGEVAAHILQETAI 372 (838)
Q Consensus 332 -----~~~~~~~l~~~l~~ll~~~~~~~~~~~g~~~~a~~i~~~~~ 372 (838)
..++++.+++++++++.++. ......++.|..|.+.+.
T Consensus 393 ~~~~~~~~~~~~l~~av~~vl~~~~---~~~~~~r~~a~~~~~~~~ 435 (459)
T PLN02448 393 EVGEETLVGREEIAELVKRFMDLES---EEGKEMRRRAKELQEICR 435 (459)
T ss_pred ccccCCcCcHHHHHHHHHHHhcCCc---hhHHHHHHHHHHHHHHHH
Confidence 24678999999999997531 122356667777777654
|
|
| >PLN02764 glycosyltransferase family protein | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.1e-19 Score=205.87 Aligned_cols=346 Identities=13% Similarity=0.086 Sum_probs=197.3
Q ss_pred EEEEEeecCCCcccHHHHHHHHHHHHHCCCeEEEEeCCCCc-ccccccCCC-c--eeeeeeccCCCcccccccccChH-H
Q 003222 16 LVFAYYVTGHGFGHATRVVEVVRNLISAGHDVHVVTGAPDF-VFTSEIQSP-R--LFIRKVLLDCGAVQADALTVDRL-A 90 (838)
Q Consensus 16 ~~Il~~v~g~G~GHv~r~laLA~~L~~~Gh~V~~v~~~~~~-~~~~~i~~~-~--~~~~~~~~~~g~~~~~~~~~~~~-~ 90 (838)
++|++ ++.++.||++|++.||+.|+.+|+.|||++..... ........+ . +.+.+.....|+........+.. .
T Consensus 6 ~Hvvl-~P~paqGHi~P~l~LAk~La~~g~~vT~~tt~~~~~~~~~~~~~~~~~~v~~~~~p~~~glp~g~e~~~~~~~~ 84 (453)
T PLN02764 6 FHVLM-YPWFATGHMTPFLFLANKLAEKGHTVTFLLPKKALKQLEHLNLFPHNIVFRSVTVPHVDGLPVGTETVSEIPVT 84 (453)
T ss_pred cEEEE-ECCcccccHHHHHHHHHHHHhCCCEEEEEeCcchhhhhcccccCCCCceEEEEECCCcCCCCCcccccccCChh
Confidence 45543 57889999999999999999999999999765311 111100001 1 22211111113211000000001 1
Q ss_pred HHHHHHHHhhccHHHHHHHHHHHHhcCCCcEEEECCCchHHHHHHHhCCcEEEEecCch--hHHH--H-hh----hhhcc
Q 003222 91 SLEKYSETAVAPRKSILKDEVEWLNSIKADLVVSDVVPVACRAAADAGIRSVCVTNFSW--DFIY--A-EY----VMAAG 161 (838)
Q Consensus 91 ~l~~~~~~~~~~~~~~l~~~~~~L~~~kPDlVVsD~~~~~~~aA~~lgIP~V~is~~~~--~~i~--~-~~----~~~~~ 161 (838)
....+... ...+.....++|++.+||+||+|+.+|+..+|+.+|||.+.+...+- ...+ . .. .+..+
T Consensus 85 ~~~~~~~a----~~~~~~~~~~~l~~~~~~~iV~D~~~w~~~vA~~~gIP~~~f~~~~a~~~~~~~~~~~~~~~~~pglp 160 (453)
T PLN02764 85 SADLLMSA----MDLTRDQVEVVVRAVEPDLIFFDFAHWIPEVARDFGLKTVKYVVVSASTIASMLVPGGELGVPPPGYP 160 (453)
T ss_pred HHHHHHHH----HHHhHHHHHHHHHhCCCCEEEECCchhHHHHHHHhCCCEEEEEcHHHHHHHHHhcccccCCCCCCCCC
Confidence 11111111 11222344566777789999999988999999999999988733210 0000 0 00 01000
Q ss_pred c--------------------c---hHHHHHHHHhhccccceEEecCCCCC-------CCCC--CceeecCcccccC---
Q 003222 162 H--------------------H---HRSIVWQIAEDYSHCEFLIRLPGYCP-------MPAF--RDVIDVPLVVRRL--- 206 (838)
Q Consensus 162 ~--------------------~---~~~i~~~l~~~y~~~d~ll~~~~~~~-------~p~~--~~v~~ip~~~~~~--- 206 (838)
. . ...+..++......++.++.-+++.. +... ++++.|||+...+
T Consensus 161 ~~~v~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~vlvNTf~eLE~~~~~~~~~~~~~~v~~VGPL~~~~~~~ 240 (453)
T PLN02764 161 SSKVLLRKQDAYTMKNLEPTNTIDVGPNLLERVTTSLMNSDVIAIRTAREIEGNFCDYIEKHCRKKVLLTGPVFPEPDKT 240 (453)
T ss_pred CCcccCcHhhCcchhhcCCCccchhHHHHHHHHHHhhccCCEEEEeccHHhhHHHHHHHHhhcCCcEEEeccCccCcccc
Confidence 0 0 00111111111222332332222110 0001 3577888875322
Q ss_pred CcChHHHHHHhCCCCCCcEEEEEcCCCCc-h-hhhHH---hhCCC--CcEEEEe---CCCC--CCCCCCeEEC--CC---
Q 003222 207 HKSRKEVRKELGIEDDVKLLILNFGGQPA-G-WKLKE---EYLPS--GWKCLVC---GASD--SQLPPNFIKL--PK--- 269 (838)
Q Consensus 207 ~~~~~~~r~~l~~~~~~~~Vlvs~Gs~~~-~-~~ll~---~l~~~--~~~~vv~---G~~~--~~lp~nv~~~--~~--- 269 (838)
...++++.+||+..+++++|||||||... . .++.+ .|... .+.+++- |... ..+|+|+... +.
T Consensus 241 ~~~~~~cl~WLD~q~~~sVvyvsfGS~~~~~~~q~~ela~gL~~s~~pflwv~r~~~~~~~~~~~lp~~f~~r~~grG~v 320 (453)
T PLN02764 241 RELEERWVKWLSGYEPDSVVFCALGSQVILEKDQFQELCLGMELTGSPFLVAVKPPRGSSTIQEALPEGFEERVKGRGVV 320 (453)
T ss_pred ccchhHHHHHHhCCCCCceEEEeecccccCCHHHHHHHHHHHHhCCCCeEEEEeCCCCCcchhhhCCcchHhhhccCCcE
Confidence 11245688999988889999999999865 2 33333 33333 3444443 1111 1266665321 11
Q ss_pred -CCCHH--HHHhh--cCEEEecCChhhHHHHHHcCCcEEEEeCCCCCChHHHHHHHH-HcCcEEEEecC---CCChhhHH
Q 003222 270 -DAYTP--DFMAA--SDCMLGKIGYGTVSEALAYKLPFVFVRRDYFNEEPFLRNMLE-FYQGGVEMIRR---DLLTGHWK 340 (838)
Q Consensus 270 -~~~~p--dlLa~--adl~It~gG~~Tv~Eal~~GvP~l~iP~~~~~EQ~~Na~~l~-~~G~g~~l~~~---~~~~~~l~ 340 (838)
..|+| ++|+| +++||||||+||++|++++|||||++| .+.||+.||++++ ..|+|+.+... .++.+.+.
T Consensus 321 ~~~W~PQ~~vL~h~~v~~FvtH~G~nS~~Eal~~GVP~l~~P--~~~DQ~~na~~l~~~~g~gv~~~~~~~~~~~~e~i~ 398 (453)
T PLN02764 321 WGGWVQQPLILSHPSVGCFVSHCGFGSMWESLLSDCQIVLVP--QLGDQVLNTRLLSDELKVSVEVAREETGWFSKESLR 398 (453)
T ss_pred EeCCCCHHHHhcCcccCeEEecCCchHHHHHHHcCCCEEeCC--cccchHHHHHHHHHHhceEEEeccccCCccCHHHHH
Confidence 25888 89988 788999999999999999999999999 7999999999996 58999887543 47889999
Q ss_pred HHHHHHhhCCCCccCCCCHHHHHHHHHHHHh
Q 003222 341 PYLERAISLKPCYEGGINGGEVAAHILQETA 371 (838)
Q Consensus 341 ~~l~~ll~~~~~~~~~~~g~~~~a~~i~~~~ 371 (838)
+++++++.++. . .....++.|..|.+.+
T Consensus 399 ~av~~vm~~~~-~--~g~~~r~~a~~~~~~~ 426 (453)
T PLN02764 399 DAINSVMKRDS-E--IGNLVKKNHTKWRETL 426 (453)
T ss_pred HHHHHHhcCCc-h--hHHHHHHHHHHHHHHH
Confidence 99999996541 1 1223445555555543
|
|
| >PLN02410 UDP-glucoronosyl/UDP-glucosyl transferase family protein | Back alignment and domain information |
|---|
Probab=99.87 E-value=9.9e-20 Score=207.66 Aligned_cols=337 Identities=13% Similarity=0.116 Sum_probs=193.2
Q ss_pred ceEEEEEeecCCCcccHHHHHHHHHHHHHCCCeEEEEeCCCCcccccccCCCceeeeeeccCCCcccccccccChHHHHH
Q 003222 14 KHLVFAYYVTGHGFGHATRVVEVVRNLISAGHDVHVVTGAPDFVFTSEIQSPRLFIRKVLLDCGAVQADALTVDRLASLE 93 (838)
Q Consensus 14 ~~~~Il~~v~g~G~GHv~r~laLA~~L~~~Gh~V~~v~~~~~~~~~~~i~~~~~~~~~~~~~~g~~~~~~~~~~~~~~l~ 93 (838)
++.++++ ++.++.||++|++.||+.|..+|+.|||++...... ......+.+.+... ..|+...+.-.......+.
T Consensus 6 ~~~HVvl-vPfpaqGHi~P~l~LAk~La~~G~~VT~v~T~~n~~-~~~~~~~~i~~~~i--p~glp~~~~~~~~~~~~~~ 81 (451)
T PLN02410 6 ARRRVVL-VPVPAQGHISPMMQLAKTLHLKGFSITIAQTKFNYF-SPSDDFTDFQFVTI--PESLPESDFKNLGPIEFLH 81 (451)
T ss_pred CCCEEEE-ECCCccccHHHHHHHHHHHHcCCCEEEEEeCccccc-ccccCCCCeEEEeC--CCCCCcccccccCHHHHHH
Confidence 3445533 588999999999999999999999999997753211 11111112333332 1232210000001111111
Q ss_pred HHHHHhhccHHHHHHHHHHHHhc------CCCcEEEECC-CchHHHHHHHhCCcEEEEecCc---hh--H----HHH---
Q 003222 94 KYSETAVAPRKSILKDEVEWLNS------IKADLVVSDV-VPVACRAAADAGIRSVCVTNFS---WD--F----IYA--- 154 (838)
Q Consensus 94 ~~~~~~~~~~~~~l~~~~~~L~~------~kPDlVVsD~-~~~~~~aA~~lgIP~V~is~~~---~~--~----i~~--- 154 (838)
.+.. .......++|++ -+|++||+|+ .+|+..+|+.+|||.+.+...+ .. . ...
T Consensus 82 ~~~~-------~~~~~~~~~L~~l~~~~~~p~~cVI~D~f~~Wa~dvA~~lgIP~v~F~t~~a~~~~~~~~~~~~~~~~~ 154 (451)
T PLN02410 82 KLNK-------ECQVSFKDCLGQLVLQQGNEIACVVYDEFMYFAEAAAKEFKLPNVIFSTTSATAFVCRSVFDKLYANNV 154 (451)
T ss_pred HHHH-------HhHHHHHHHHHHHHhccCCCcEEEEECCcchHHHHHHHHcCCCEEEEEccCHHHHHHHHHHHHHHhccC
Confidence 1111 111112222322 2569999996 8899999999999998874332 10 0 000
Q ss_pred --h----------hhhhccc----ch--------HHHHHHHHh--hccccceEEecCCCCC-------C-CCC-Cceeec
Q 003222 155 --E----------YVMAAGH----HH--------RSIVWQIAE--DYSHCEFLIRLPGYCP-------M-PAF-RDVIDV 199 (838)
Q Consensus 155 --~----------~~~~~~~----~~--------~~i~~~l~~--~y~~~d~ll~~~~~~~-------~-p~~-~~v~~i 199 (838)
. .++..+. .+ +.+...+.. ....++-++.-++... . ... +++..+
T Consensus 155 ~~~~~~~~~~~~~~iPg~~~~~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~l~~~~~~~v~~v 234 (451)
T PLN02410 155 LAPLKEPKGQQNELVPEFHPLRCKDFPVSHWASLESIMELYRNTVDKRTASSVIINTASCLESSSLSRLQQQLQIPVYPI 234 (451)
T ss_pred CCCccccccCccccCCCCCCCChHHCcchhcCCcHHHHHHHHHHhhcccCCEEEEeChHHhhHHHHHHHHhccCCCEEEe
Confidence 0 0000000 00 001111110 1122333332222110 0 011 357788
Q ss_pred Cccccc---CCcC---hHHHHHHhCCCCCCcEEEEEcCCCCch--h---hhHHhhCCCCcEEEE-eCCC------C----
Q 003222 200 PLVVRR---LHKS---RKEVRKELGIEDDVKLLILNFGGQPAG--W---KLKEEYLPSGWKCLV-CGAS------D---- 257 (838)
Q Consensus 200 p~~~~~---~~~~---~~~~r~~l~~~~~~~~Vlvs~Gs~~~~--~---~ll~~l~~~~~~~vv-~G~~------~---- 257 (838)
||+... +... ..+..+||+..+.+++|||||||...- . ++...|...+..|++ +... .
T Consensus 235 Gpl~~~~~~~~~~~~~~~~~~~wLd~~~~~sVvyvsfGS~~~~~~~q~~ela~gLe~s~~~FlWv~r~~~~~~~~~~~~l 314 (451)
T PLN02410 235 GPLHLVASAPTSLLEENKSCIEWLNKQKKNSVIFVSLGSLALMEINEVMETASGLDSSNQQFLWVIRPGSVRGSEWIESL 314 (451)
T ss_pred cccccccCCCccccccchHHHHHHHhCCCCcEEEEEccccccCCHHHHHHHHHHHHhcCCCeEEEEccCcccccchhhcC
Confidence 886431 1111 123567888777789999999998752 2 233344333333332 2211 0
Q ss_pred C-C----CCCCeEECCCCCCHH--HHHhh--cCEEEecCChhhHHHHHHcCCcEEEEeCCCCCChHHHHHHHHHc-CcEE
Q 003222 258 S-Q----LPPNFIKLPKDAYTP--DFMAA--SDCMLGKIGYGTVSEALAYKLPFVFVRRDYFNEEPFLRNMLEFY-QGGV 327 (838)
Q Consensus 258 ~-~----lp~nv~~~~~~~~~p--dlLa~--adl~It~gG~~Tv~Eal~~GvP~l~iP~~~~~EQ~~Na~~l~~~-G~g~ 327 (838)
+ . .++|..+. +|+| ++|+| +++||||||+||++||+++|||||++| .+.||+.||+++++. |+|+
T Consensus 315 p~~f~er~~~~g~v~---~w~PQ~~iL~h~~v~~fvtH~G~nS~~Ea~~~GvP~l~~P--~~~DQ~~na~~~~~~~~~G~ 389 (451)
T PLN02410 315 PKEFSKIISGRGYIV---KWAPQKEVLSHPAVGGFWSHCGWNSTLESIGEGVPMICKP--FSSDQKVNARYLECVWKIGI 389 (451)
T ss_pred ChhHHHhccCCeEEE---ccCCHHHHhCCCccCeeeecCchhHHHHHHHcCCCEEecc--ccccCHHHHHHHHHHhCeeE
Confidence 1 1 23555654 5787 89988 777999999999999999999999999 799999999999866 9999
Q ss_pred EEecCCCChhhHHHHHHHHhhCCCCccCCCCHHHHHHHHHHHHhc
Q 003222 328 EMIRRDLLTGHWKPYLERAISLKPCYEGGINGGEVAAHILQETAI 372 (838)
Q Consensus 328 ~l~~~~~~~~~l~~~l~~ll~~~~~~~~~~~g~~~~a~~i~~~~~ 372 (838)
.+. ..++.+.+.++|++++.++ ......+.|..|.+.+.
T Consensus 390 ~~~-~~~~~~~v~~av~~lm~~~-----~~~~~r~~a~~l~~~~~ 428 (451)
T PLN02410 390 QVE-GDLDRGAVERAVKRLMVEE-----EGEEMRKRAISLKEQLR 428 (451)
T ss_pred EeC-CcccHHHHHHHHHHHHcCC-----cHHHHHHHHHHHHHHHH
Confidence 887 5788899999999999764 22345666666666543
|
|
| >COG4671 Predicted glycosyl transferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.2e-19 Score=190.46 Aligned_cols=337 Identities=21% Similarity=0.247 Sum_probs=206.8
Q ss_pred CceEEEEEee-cCCCcccHHHHHHHHHHHHHC--CCeEEEEeCCC---CcccccccCCCceeeeee-ccCCCcccccccc
Q 003222 13 SKHLVFAYYV-TGHGFGHATRVVEVVRNLISA--GHDVHVVTGAP---DFVFTSEIQSPRLFIRKV-LLDCGAVQADALT 85 (838)
Q Consensus 13 m~~~~Il~~v-~g~G~GHv~r~laLA~~L~~~--Gh~V~~v~~~~---~~~~~~~i~~~~~~~~~~-~~~~g~~~~~~~~ 85 (838)
+++++|+||+ ...|.||+.||+.+|++|++. |.+|+++++.+ .|.....+ ..+..++. ..+.|.+......
T Consensus 7 ~~~~Ri~~Yshd~~GlGHlrR~~~Ia~aLv~d~~~~~Il~IsG~~~~~~F~~~~gV--d~V~LPsl~k~~~G~~~~~d~~ 84 (400)
T COG4671 7 SKRPRILFYSHDLLGLGHLRRALRIAHALVEDYLGFDILIISGGPPAGGFPGPAGV--DFVKLPSLIKGDNGEYGLVDLD 84 (400)
T ss_pred hccceEEEEehhhccchHHHHHHHHHHHHhhcccCceEEEEeCCCccCCCCCcccC--ceEecCceEecCCCceeeeecC
Confidence 3456777776 678999999999999999998 99999999875 22222222 12233332 1223433221122
Q ss_pred cChHHHHHHHHHHhhccHHHHHHHHHHHHhcCCCcEEEECCCchHHHH------HHH--hCCcE-EEEecCchhHHHHhh
Q 003222 86 VDRLASLEKYSETAVAPRKSILKDEVEWLNSIKADLVVSDVVPVACRA------AAD--AGIRS-VCVTNFSWDFIYAEY 156 (838)
Q Consensus 86 ~~~~~~l~~~~~~~~~~~~~~l~~~~~~L~~~kPDlVVsD~~~~~~~a------A~~--lgIP~-V~is~~~~~~i~~~~ 156 (838)
.+ +....++ +.+++ ...++.+|||++|+|..|.|+.- +.. .+-+. +.+++.. ++....
T Consensus 85 ~~----l~e~~~~----Rs~li---l~t~~~fkPDi~IVd~~P~Glr~EL~ptL~yl~~~~t~~vL~lr~i~--D~p~~~ 151 (400)
T COG4671 85 GD----LEETKKL----RSQLI---LSTAETFKPDIFIVDKFPFGLRFELLPTLEYLKTTGTRLVLGLRSIR--DIPQEL 151 (400)
T ss_pred CC----HHHHHHH----HHHHH---HHHHHhcCCCEEEEeccccchhhhhhHHHHHHhhcCCcceeehHhhh--hchhhh
Confidence 22 2222221 33333 44468999999999987777431 111 13222 3332211 000000
Q ss_pred hhhcccchHHHHHHHHhhccccceEEe-cC-CCCCCCC-------CCceeecCccccc-CC-cChHHHHHHhCCCCCCcE
Q 003222 157 VMAAGHHHRSIVWQIAEDYSHCEFLIR-LP-GYCPMPA-------FRDVIDVPLVVRR-LH-KSRKEVRKELGIEDDVKL 225 (838)
Q Consensus 157 ~~~~~~~~~~i~~~l~~~y~~~d~ll~-~~-~~~~~p~-------~~~v~~ip~~~~~-~~-~~~~~~r~~l~~~~~~~~ 225 (838)
... .........+...|.. .++. -| ++-+... ..+++++|.+.+. +. ..|.. ..++...
T Consensus 152 ~~~--w~~~~~~~~I~r~yD~--V~v~GdP~f~d~~~~~~~~~~i~~k~~ytG~vq~~~~~~~~p~~------~~pE~~~ 221 (400)
T COG4671 152 EAD--WRRAETVRLINRFYDL--VLVYGDPDFYDPLTEFPFAPAIRAKMRYTGFVQRSLPHLPLPPH------EAPEGFD 221 (400)
T ss_pred ccc--hhhhHHHHHHHHhheE--EEEecCccccChhhcCCccHhhhhheeEeEEeeccCcCCCCCCc------CCCccce
Confidence 000 0001111122223321 1111 11 1111111 1246666666321 10 11111 0135567
Q ss_pred EEEEcCCCCchhhhHHhh-----CCCCc---EEEEeCCCCCC---------CC--CCeEECCCCCCHHHHHhhcCEEEec
Q 003222 226 LILNFGGQPAGWKLKEEY-----LPSGW---KCLVCGASDSQ---------LP--PNFIKLPKDAYTPDFMAASDCMLGK 286 (838)
Q Consensus 226 Vlvs~Gs~~~~~~ll~~l-----~~~~~---~~vv~G~~~~~---------lp--~nv~~~~~~~~~pdlLa~adl~It~ 286 (838)
|+||.||...+.++.+.. ..+++ .+++.|+..|. .+ +++.++.|...+-++|+.|+.+|+.
T Consensus 222 Ilvs~GGG~dG~eLi~~~l~A~~~l~~l~~~~~ivtGP~MP~~~r~~l~~~A~~~p~i~I~~f~~~~~~ll~gA~~vVSm 301 (400)
T COG4671 222 ILVSVGGGADGAELIETALAAAQLLAGLNHKWLIVTGPFMPEAQRQKLLASAPKRPHISIFEFRNDFESLLAGARLVVSM 301 (400)
T ss_pred EEEecCCChhhHHHHHHHHHHhhhCCCCCcceEEEeCCCCCHHHHHHHHHhcccCCCeEEEEhhhhHHHHHHhhheeeec
Confidence 999999888776665521 11222 45678988763 24 7899999998888999999999999
Q ss_pred CChhhHHHHHHcCCcEEEEeCC-CCCChHHHHHHHHHcCcEEEEecCCCChhhHHHHHHHHhhCCCCc--cCCCCHHHHH
Q 003222 287 IGYGTVSEALAYKLPFVFVRRD-YFNEEPFLRNMLEFYQGGVEMIRRDLLTGHWKPYLERAISLKPCY--EGGINGGEVA 363 (838)
Q Consensus 287 gG~~Tv~Eal~~GvP~l~iP~~-~~~EQ~~Na~~l~~~G~g~~l~~~~~~~~~l~~~l~~ll~~~~~~--~~~~~g~~~~ 363 (838)
|||||+||-+++|||.|+||+. ...||-.-|++++++|..-++.+++++++.++++|...+..++.. .-..+|++.+
T Consensus 302 ~GYNTvCeILs~~k~aLivPr~~p~eEQliRA~Rl~~LGL~dvL~pe~lt~~~La~al~~~l~~P~~~~~~L~L~G~~~~ 381 (400)
T COG4671 302 GGYNTVCEILSFGKPALIVPRAAPREEQLIRAQRLEELGLVDVLLPENLTPQNLADALKAALARPSPSKPHLDLEGLEHI 381 (400)
T ss_pred ccchhhhHHHhCCCceEEeccCCCcHHHHHHHHHHHhcCcceeeCcccCChHHHHHHHHhcccCCCCCccccCchhhHhH
Confidence 9999999999999999999985 345788899999999999999999999999999999988754221 2578999999
Q ss_pred HHHHHHHhccC
Q 003222 364 AHILQETAIGK 374 (838)
Q Consensus 364 a~~i~~~~~~~ 374 (838)
+.++.+++..+
T Consensus 382 a~~l~e~L~~~ 392 (400)
T COG4671 382 ARILAELLSTR 392 (400)
T ss_pred HHHHHHHhhhh
Confidence 99998887543
|
|
| >PLN02992 coniferyl-alcohol glucosyltransferase | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.4e-19 Score=206.87 Aligned_cols=331 Identities=15% Similarity=0.158 Sum_probs=192.5
Q ss_pred ecCCCcccHHHHHHHHHHHH-HCCCeEEEEeCCCC--cccccccCCCceeeeeecc-CC-CcccccccccChHHHHHHHH
Q 003222 22 VTGHGFGHATRVVEVVRNLI-SAGHDVHVVTGAPD--FVFTSEIQSPRLFIRKVLL-DC-GAVQADALTVDRLASLEKYS 96 (838)
Q Consensus 22 v~g~G~GHv~r~laLA~~L~-~~Gh~V~~v~~~~~--~~~~~~i~~~~~~~~~~~~-~~-g~~~~~~~~~~~~~~l~~~~ 96 (838)
++.++.||++|++.||+.|. .+|+.|||++.... .+.......+.+.+..... +. |+... ..+. ...+.
T Consensus 11 ~P~paqGHi~P~l~LAk~La~~~g~~vT~v~t~~n~~~~~~~~~~~~~i~~~~lp~p~~~glp~~---~~~~---~~~~~ 84 (481)
T PLN02992 11 FSSPGMGHVIPVIELGKRLSANHGFHVTVFVLETDAASAQSKFLNSTGVDIVGLPSPDISGLVDP---SAHV---VTKIG 84 (481)
T ss_pred eCCcccchHHHHHHHHHHHHhCCCcEEEEEeCCCchhhhhhccccCCCceEEECCCccccCCCCC---CccH---HHHHH
Confidence 58899999999999999998 68999999977521 1111111111233322110 00 11100 0011 11111
Q ss_pred HHhhccHHHHHHHHHHHHhc--CCCcEEEECC-CchHHHHHHHhCCcEEEEecCchh-H-HHHhh---------------
Q 003222 97 ETAVAPRKSILKDEVEWLNS--IKADLVVSDV-VPVACRAAADAGIRSVCVTNFSWD-F-IYAEY--------------- 156 (838)
Q Consensus 97 ~~~~~~~~~~l~~~~~~L~~--~kPDlVVsD~-~~~~~~aA~~lgIP~V~is~~~~~-~-i~~~~--------------- 156 (838)
.. .........++|++ .+|++||+|+ .+|+..+|+.+|||.+.+...+.. . .+..+
T Consensus 85 ~~----~~~~~~~~~~~l~~~~~~p~cvV~D~f~~Wa~dVA~elgIP~v~F~t~sA~~~~~~~~~~~~~~~~~~~~~~~~ 160 (481)
T PLN02992 85 VI----MREAVPTLRSKIAEMHQKPTALIVDLFGTDALCLGGEFNMLTYIFIASNARFLGVSIYYPTLDKDIKEEHTVQR 160 (481)
T ss_pred HH----HHHhHHHHHHHHHhcCCCCeEEEECCcchhHHHHHHHcCCCEEEEecCcHHHHHHHHhhhhhccccccccccCC
Confidence 11 11122333455554 3789999996 889999999999999887432210 0 00000
Q ss_pred ----hhhccc-chHHH-----------HHHH---HhhccccceEEecCCCC-------CCC------C--CCceeecCcc
Q 003222 157 ----VMAAGH-HHRSI-----------VWQI---AEDYSHCEFLIRLPGYC-------PMP------A--FRDVIDVPLV 202 (838)
Q Consensus 157 ----~~~~~~-~~~~i-----------~~~l---~~~y~~~d~ll~~~~~~-------~~p------~--~~~v~~ip~~ 202 (838)
++..+. ....+ ...+ ...+..++.++.-++.. .+. . .++++.|||+
T Consensus 161 ~~~~iPg~~~l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~a~gvlvNTf~eLE~~~l~~l~~~~~~~~~~~~~v~~VGPl 240 (481)
T PLN02992 161 KPLAMPGCEPVRFEDTLDAYLVPDEPVYRDFVRHGLAYPKADGILVNTWEEMEPKSLKSLQDPKLLGRVARVPVYPIGPL 240 (481)
T ss_pred CCcccCCCCccCHHHhhHhhcCCCcHHHHHHHHHHHhcccCCEEEEechHHHhHHHHHHHhhccccccccCCceEEecCc
Confidence 000000 00000 0000 11122333333222110 000 0 1357788887
Q ss_pred ccc--CCcChHHHHHHhCCCCCCcEEEEEcCCCCc-h-h---hhHHhhCCCC--cEEEEe----CC-------------C
Q 003222 203 VRR--LHKSRKEVRKELGIEDDVKLLILNFGGQPA-G-W---KLKEEYLPSG--WKCLVC----GA-------------S 256 (838)
Q Consensus 203 ~~~--~~~~~~~~r~~l~~~~~~~~Vlvs~Gs~~~-~-~---~ll~~l~~~~--~~~vv~----G~-------------~ 256 (838)
... ......++.+||+..+.+++|||||||+.. . . ++...|...+ +.+++- +. .
T Consensus 241 ~~~~~~~~~~~~c~~wLd~~~~~sVvyvsfGS~~~l~~~q~~ela~gL~~s~~~flW~~r~~~~~~~~~~~~~~~~~~~~ 320 (481)
T PLN02992 241 CRPIQSSKTDHPVLDWLNKQPNESVLYISFGSGGSLSAKQLTELAWGLEMSQQRFVWVVRPPVDGSACSAYFSANGGETR 320 (481)
T ss_pred cCCcCCCcchHHHHHHHHcCCCCceEEEeecccccCCHHHHHHHHHHHHHcCCCEEEEEeCCcccccccccccCcccccc
Confidence 542 112234577899876678899999999865 1 2 2333343333 333331 10 0
Q ss_pred C--C-CCCCC---------eEECCCCCCHH--HHHhh--cCEEEecCChhhHHHHHHcCCcEEEEeCCCCCChHHHHHHH
Q 003222 257 D--S-QLPPN---------FIKLPKDAYTP--DFMAA--SDCMLGKIGYGTVSEALAYKLPFVFVRRDYFNEEPFLRNML 320 (838)
Q Consensus 257 ~--~-~lp~n---------v~~~~~~~~~p--dlLa~--adl~It~gG~~Tv~Eal~~GvP~l~iP~~~~~EQ~~Na~~l 320 (838)
. . .+|+| +.+. .|+| ++|+| +.+||||||+||++|++++|||||++| .+.||+.||+++
T Consensus 321 ~~~~~~lp~~f~eR~~~rg~vv~---~W~PQ~~iL~h~~vg~FitH~G~nS~~Eal~~GVP~l~~P--~~~DQ~~na~~~ 395 (481)
T PLN02992 321 DNTPEYLPEGFVSRTHDRGFVVP---SWAPQAEILAHQAVGGFLTHCGWSSTLESVVGGVPMIAWP--LFAEQNMNAALL 395 (481)
T ss_pred cchhhhCCHHHHHHhcCCCEEEe---ecCCHHHHhCCcccCeeEecCchhHHHHHHHcCCCEEecC--ccchhHHHHHHH
Confidence 0 1 15554 5553 5777 89988 456999999999999999999999999 899999999999
Q ss_pred -HHcCcEEEEecC--CCChhhHHHHHHHHhhCCCCccCCCCHHHHHHHHHHHHhc
Q 003222 321 -EFYQGGVEMIRR--DLLTGHWKPYLERAISLKPCYEGGINGGEVAAHILQETAI 372 (838)
Q Consensus 321 -~~~G~g~~l~~~--~~~~~~l~~~l~~ll~~~~~~~~~~~g~~~~a~~i~~~~~ 372 (838)
+++|+|+.++.. .++.+.+.++|++++.++ ......+.|+.+.+.+.
T Consensus 396 ~~~~g~gv~~~~~~~~~~~~~l~~av~~vm~~~-----~g~~~r~~a~~~~~~a~ 445 (481)
T PLN02992 396 SDELGIAVRSDDPKEVISRSKIEALVRKVMVEE-----EGEEMRRKVKKLRDTAE 445 (481)
T ss_pred HHHhCeeEEecCCCCcccHHHHHHHHHHHhcCC-----chHHHHHHHHHHHHHHH
Confidence 599999999763 478899999999999754 22345666666666553
|
|
| >PLN02207 UDP-glycosyltransferase | Back alignment and domain information |
|---|
Probab=99.85 E-value=9.4e-19 Score=199.68 Aligned_cols=342 Identities=11% Similarity=0.088 Sum_probs=194.2
Q ss_pred CceEEEEEeecCCCcccHHHHHHHHHHHHHCC--CeEEEEeCCCCc--ccccccC-----CCceeeeeeccCCCccccc-
Q 003222 13 SKHLVFAYYVTGHGFGHATRVVEVVRNLISAG--HDVHVVTGAPDF--VFTSEIQ-----SPRLFIRKVLLDCGAVQAD- 82 (838)
Q Consensus 13 m~~~~Il~~v~g~G~GHv~r~laLA~~L~~~G--h~V~~v~~~~~~--~~~~~i~-----~~~~~~~~~~~~~g~~~~~- 82 (838)
|++.++++ ++..|.||++|++.+|+.|..+| ..|||++..... .....+. .+.+.+.... .+.....
T Consensus 1 ~~~~hvv~-~P~p~qGHi~P~l~lA~~La~~gg~~~vT~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~lp--~~~~~~~~ 77 (468)
T PLN02207 1 MRNAELIF-IPTPTVGHLVPFLEFARRLIEQDDRIRITILLMKLQGQSHLDTYVKSIASSQPFVRFIDVP--ELEEKPTL 77 (468)
T ss_pred CCCcEEEE-eCCcchhhHHHHHHHHHHHHhCCCCeEEEEEEcCCCcchhhHHhhhhccCCCCCeEEEEeC--CCCCCCcc
Confidence 55556644 58899999999999999999998 899998654211 1111111 1123333321 0100000
Q ss_pred ccccChHHHHHHHHHHhhccHHHHHHHHHHHHhcC----CC-cEEEECC-CchHHHHHHHhCCcEEEEecCc------hh
Q 003222 83 ALTVDRLASLEKYSETAVAPRKSILKDEVEWLNSI----KA-DLVVSDV-VPVACRAAADAGIRSVCVTNFS------WD 150 (838)
Q Consensus 83 ~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~L~~~----kP-DlVVsD~-~~~~~~aA~~lgIP~V~is~~~------~~ 150 (838)
....+... .+..........+.....+++++. +| ++||+|. .+|+..+|+.+|||.+.+...+ +.
T Consensus 78 ~~~~~~~~---~~~~~~~~~~~~~~~~~~~~l~~~~~~~~pv~cvV~D~~~~w~~~vA~~~gip~~~f~~~~a~~~~~~~ 154 (468)
T PLN02207 78 GGTQSVEA---YVYDVIEKNIPLVRNIVMDILSSLALDGVKVKGFVADFFCLPMIDVAKDVSLPFYVFLTTNSGFLAMMQ 154 (468)
T ss_pred ccccCHHH---HHHHHHHhcchhHHHHHHHHHHHhccCCCCeEEEEECCcchHHHHHHHHhCCCEEEEECccHHHHHHHH
Confidence 00111111 111111101010111123334322 45 8999995 8899999999999998873322 10
Q ss_pred HHH---H-h--h----------hhhc-cc-c-------------hHHHHHHHHhhccccceEEecCCCC---C-------
Q 003222 151 FIY---A-E--Y----------VMAA-GH-H-------------HRSIVWQIAEDYSHCEFLIRLPGYC---P------- 189 (838)
Q Consensus 151 ~i~---~-~--~----------~~~~-~~-~-------------~~~i~~~l~~~y~~~d~ll~~~~~~---~------- 189 (838)
.+. . . . ++.. +. . +..+...+ .....++.++.-++.. +
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~vPgl~~~l~~~dlp~~~~~~~~~~~~~~~~-~~~~~~~~vlvNtf~~LE~~~~~~~~~ 233 (468)
T PLN02207 155 YLADRHSKDTSVFVRNSEEMLSIPGFVNPVPANVLPSALFVEDGYDAYVKLA-ILFTKANGILVNSSFDIEPYSVNHFLD 233 (468)
T ss_pred HhhhccccccccCcCCCCCeEECCCCCCCCChHHCcchhcCCccHHHHHHHH-HhcccCCEEEEEchHHHhHHHHHHHHh
Confidence 000 0 0 0 0100 00 0 00111111 1122233333222111 0
Q ss_pred CCCCCceeecCccccc-CCc-------ChHHHHHHhCCCCCCcEEEEEcCCCCch-h----hhHHhhCCCCcEEEE-eC-
Q 003222 190 MPAFRDVIDVPLVVRR-LHK-------SRKEVRKELGIEDDVKLLILNFGGQPAG-W----KLKEEYLPSGWKCLV-CG- 254 (838)
Q Consensus 190 ~p~~~~v~~ip~~~~~-~~~-------~~~~~r~~l~~~~~~~~Vlvs~Gs~~~~-~----~ll~~l~~~~~~~vv-~G- 254 (838)
.+..++++.|||+... ... ..+++.+||+..+++++|||||||.... . ++...+...+..|++ +.
T Consensus 234 ~~~~p~v~~VGPl~~~~~~~~~~~~~~~~~~~~~WLd~~~~~sVVyvSfGS~~~~~~~q~~ela~~l~~~~~~flW~~r~ 313 (468)
T PLN02207 234 EQNYPSVYAVGPIFDLKAQPHPEQDLARRDELMKWLDDQPEASVVFLCFGSMGRLRGPLVKEIAHGLELCQYRFLWSLRT 313 (468)
T ss_pred ccCCCcEEEecCCcccccCCCCccccchhhHHHHHHhcCCCCcEEEEEeccCcCCCHHHHHHHHHHHHHCCCcEEEEEeC
Confidence 1234568889887542 111 1256889998777788999999998652 2 233344444444433 22
Q ss_pred CCC--CC-C--------CCCeEECCCCCCHH--HHHhh--cCEEEecCChhhHHHHHHcCCcEEEEeCCCCCChHHHHHH
Q 003222 255 ASD--SQ-L--------PPNFIKLPKDAYTP--DFMAA--SDCMLGKIGYGTVSEALAYKLPFVFVRRDYFNEEPFLRNM 319 (838)
Q Consensus 255 ~~~--~~-l--------p~nv~~~~~~~~~p--dlLa~--adl~It~gG~~Tv~Eal~~GvP~l~iP~~~~~EQ~~Na~~ 319 (838)
... .. + ++|..+. .|+| ++|+| +.+||||||+||++||+++|||||++| .+.||+.|+++
T Consensus 314 ~~~~~~~~lp~~f~er~~~~g~i~---~W~PQ~~IL~H~~vg~FvTH~GwnS~~Eai~~GVP~l~~P--~~~DQ~~Na~~ 388 (468)
T PLN02207 314 EEVTNDDLLPEGFLDRVSGRGMIC---GWSPQVEILAHKAVGGFVSHCGWNSIVESLWFGVPIVTWP--MYAEQQLNAFL 388 (468)
T ss_pred CCccccccCCHHHHhhcCCCeEEE---EeCCHHHHhcccccceeeecCccccHHHHHHcCCCEEecC--ccccchhhHHH
Confidence 111 11 3 3455443 5888 79988 777999999999999999999999999 89999999998
Q ss_pred HHH-cCcEEEEec------C-CCChhhHHHHHHHHhhCCCCccCCCCHHHHHHHHHHHHhc
Q 003222 320 LEF-YQGGVEMIR------R-DLLTGHWKPYLERAISLKPCYEGGINGGEVAAHILQETAI 372 (838)
Q Consensus 320 l~~-~G~g~~l~~------~-~~~~~~l~~~l~~ll~~~~~~~~~~~g~~~~a~~i~~~~~ 372 (838)
+++ .|+|+.+.. . -++.+.+.++|++++.+ .....++.|..|.+.+.
T Consensus 389 ~~~~~gvGv~~~~~~~~~~~~~v~~e~i~~av~~vm~~------~~~~~r~~a~~l~~~a~ 443 (468)
T PLN02207 389 MVKELKLAVELKLDYRVHSDEIVNANEIETAIRCVMNK------DNNVVRKRVMDISQMIQ 443 (468)
T ss_pred HHHHhCceEEEecccccccCCcccHHHHHHHHHHHHhc------chHHHHHHHHHHHHHHH
Confidence 876 899987632 1 24778999999999852 12456666666666653
|
|
| >PLN02562 UDP-glycosyltransferase | Back alignment and domain information |
|---|
Probab=99.84 E-value=5.1e-19 Score=202.23 Aligned_cols=328 Identities=12% Similarity=0.086 Sum_probs=188.5
Q ss_pred EEEEeecCCCcccHHHHHHHHHHHHHCCCeEEEEeCCCCc-ccccccC-CCceeeeeeccCCCcccccccccChHHHHHH
Q 003222 17 VFAYYVTGHGFGHATRVVEVVRNLISAGHDVHVVTGAPDF-VFTSEIQ-SPRLFIRKVLLDCGAVQADALTVDRLASLEK 94 (838)
Q Consensus 17 ~Il~~v~g~G~GHv~r~laLA~~L~~~Gh~V~~v~~~~~~-~~~~~i~-~~~~~~~~~~~~~g~~~~~~~~~~~~~~l~~ 94 (838)
+|++ ++.++.||++|++.||+.|..+|+.|||+++.... .....+. .+++.+... ..|.. +....+. ..
T Consensus 8 HVVl-vPfPaqGHi~PmL~LAk~Las~G~~VT~vtt~~~~~~~~~~~~~~~~i~~v~l--p~g~~--~~~~~~~----~~ 78 (448)
T PLN02562 8 KIIL-VPYPAQGHVTPMLKLASAFLSRGFEPVVITPEFIHRRISATLDPKLGITFMSI--SDGQD--DDPPRDF----FS 78 (448)
T ss_pred EEEE-EcCccccCHHHHHHHHHHHHhCCCEEEEEeCcchhhhhhhccCCCCCEEEEEC--CCCCC--CCccccH----HH
Confidence 4433 58899999999999999999999999999875311 1111111 112333332 12221 1111111 11
Q ss_pred HHHHhhccHHHHHHHHHHHHhcC---CC-cEEEECC-CchHHHHHHHhCCcEEEEecCc------hhHH--H--Hh----
Q 003222 95 YSETAVAPRKSILKDEVEWLNSI---KA-DLVVSDV-VPVACRAAADAGIRSVCVTNFS------WDFI--Y--AE---- 155 (838)
Q Consensus 95 ~~~~~~~~~~~~l~~~~~~L~~~---kP-DlVVsD~-~~~~~~aA~~lgIP~V~is~~~------~~~i--~--~~---- 155 (838)
+...+. ..+.....+++++. .| ++||+|+ .+|+..+|+.+|||.+.+...+ |... . ..
T Consensus 79 l~~a~~---~~~~~~l~~ll~~l~~~~pv~cvI~D~~~~w~~~vA~~~giP~~~f~~~~a~~~~~~~~~~~~~~~~~~~~ 155 (448)
T PLN02562 79 IENSME---NTMPPQLERLLHKLDEDGEVACMVVDLLASWAIGVADRCGVPVAGFWPVMLAAYRLIQAIPELVRTGLISE 155 (448)
T ss_pred HHHHHH---HhchHHHHHHHHHhcCCCCcEEEEECCccHhHHHHHHHhCCCEEEEechhHHHHHHHHHHHHHhhcccccc
Confidence 111110 01122233444432 23 8999996 8899999999999998873322 1000 0 00
Q ss_pred -----------hhhhccc----c----------hHHHHHHHH---hhccccceEEecCCCC-------------CCCCCC
Q 003222 156 -----------YVMAAGH----H----------HRSIVWQIA---EDYSHCEFLIRLPGYC-------------PMPAFR 194 (838)
Q Consensus 156 -----------~~~~~~~----~----------~~~i~~~l~---~~y~~~d~ll~~~~~~-------------~~p~~~ 194 (838)
..+..+. . .......+. .....++.++.-++.. +.+..+
T Consensus 156 ~~~~~~~~~~~~~Pg~~~l~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~~~~~~~~~~~~ 235 (448)
T PLN02562 156 TGCPRQLEKICVLPEQPLLSTEDLPWLIGTPKARKARFKFWTRTLERTKSLRWILMNSFKDEEYDDVKNHQASYNNGQNP 235 (448)
T ss_pred ccccccccccccCCCCCCCChhhCcchhcCCCcchHHHHHHHHHHhccccCCEEEEcChhhhCHHHHHHHHhhhccccCC
Confidence 0010000 0 000011111 1112223233211110 112235
Q ss_pred ceeecCcccccCC-----c--Ch--HHHHHHhCCCCCCcEEEEEcCCCCc--hhh----hHHhhCCCCcEEEE-eCC---
Q 003222 195 DVIDVPLVVRRLH-----K--SR--KEVRKELGIEDDVKLLILNFGGQPA--GWK----LKEEYLPSGWKCLV-CGA--- 255 (838)
Q Consensus 195 ~v~~ip~~~~~~~-----~--~~--~~~r~~l~~~~~~~~Vlvs~Gs~~~--~~~----ll~~l~~~~~~~vv-~G~--- 255 (838)
+++.||++...+. . .+ .+..+||+..+.+++|||||||+.. ..+ +...+...+..|++ ...
T Consensus 236 ~v~~iGpl~~~~~~~~~~~~~~~~~~~c~~wLd~~~~~svvyvsfGS~~~~~~~~~~~~l~~~l~~~g~~fiW~~~~~~~ 315 (448)
T PLN02562 236 QILQIGPLHNQEATTITKPSFWEEDMSCLGWLQEQKPNSVIYISFGSWVSPIGESNVRTLALALEASGRPFIWVLNPVWR 315 (448)
T ss_pred CEEEecCcccccccccCCCccccchHHHHHHHhcCCCCceEEEEecccccCCCHHHHHHHHHHHHHCCCCEEEEEcCCch
Confidence 6888988753211 1 12 2345888876667899999999752 222 33334334443332 221
Q ss_pred --CCCC----CCCCeEECCCCCCHH--HHHhh--cCEEEecCChhhHHHHHHcCCcEEEEeCCCCCChHHHHHHHHH-cC
Q 003222 256 --SDSQ----LPPNFIKLPKDAYTP--DFMAA--SDCMLGKIGYGTVSEALAYKLPFVFVRRDYFNEEPFLRNMLEF-YQ 324 (838)
Q Consensus 256 --~~~~----lp~nv~~~~~~~~~p--dlLa~--adl~It~gG~~Tv~Eal~~GvP~l~iP~~~~~EQ~~Na~~l~~-~G 324 (838)
..+. +++|+.+. +|+| ++|+| +.+||||||+||++|++++|||+|++| .+.||+.||+++++ .|
T Consensus 316 ~~l~~~~~~~~~~~~~v~---~w~PQ~~iL~h~~v~~fvtH~G~nS~~Eal~~GvP~l~~P--~~~DQ~~na~~~~~~~g 390 (448)
T PLN02562 316 EGLPPGYVERVSKQGKVV---SWAPQLEVLKHQAVGCYLTHCGWNSTMEAIQCQKRLLCYP--VAGDQFVNCAYIVDVWK 390 (448)
T ss_pred hhCCHHHHHHhccCEEEE---ecCCHHHHhCCCccceEEecCcchhHHHHHHcCCCEEeCC--cccchHHHHHHHHHHhC
Confidence 1111 45788774 5777 89988 668999999999999999999999999 89999999999976 58
Q ss_pred cEEEEecCCCChhhHHHHHHHHhhCCCCccCCCCHHHHHHHHHHHHh
Q 003222 325 GGVEMIRRDLLTGHWKPYLERAISLKPCYEGGINGGEVAAHILQETA 371 (838)
Q Consensus 325 ~g~~l~~~~~~~~~l~~~l~~ll~~~~~~~~~~~g~~~~a~~i~~~~ 371 (838)
+|+.+. +++.+.+.++|++++.++ ...+.|..+.+.+
T Consensus 391 ~g~~~~--~~~~~~l~~~v~~~l~~~--------~~r~~a~~l~~~~ 427 (448)
T PLN02562 391 IGVRIS--GFGQKEVEEGLRKVMEDS--------GMGERLMKLRERA 427 (448)
T ss_pred ceeEeC--CCCHHHHHHHHHHHhCCH--------HHHHHHHHHHHHH
Confidence 887774 577889999999998643 3455556565543
|
|
| >PLN03004 UDP-glycosyltransferase | Back alignment and domain information |
|---|
Probab=99.84 E-value=6.2e-19 Score=200.50 Aligned_cols=165 Identities=14% Similarity=0.183 Sum_probs=116.8
Q ss_pred CceeecCcccccCC---c---ChHHHHHHhCCCCCCcEEEEEcCCCCc-hh----hhHHhhCCCCcEEEE-eCCC-----
Q 003222 194 RDVIDVPLVVRRLH---K---SRKEVRKELGIEDDVKLLILNFGGQPA-GW----KLKEEYLPSGWKCLV-CGAS----- 256 (838)
Q Consensus 194 ~~v~~ip~~~~~~~---~---~~~~~r~~l~~~~~~~~Vlvs~Gs~~~-~~----~ll~~l~~~~~~~vv-~G~~----- 256 (838)
++++.|||+...+. . ...+..+||+..+++++|||||||+.. .. ++...|...+..|++ +...
T Consensus 235 ~~v~~vGPl~~~~~~~~~~~~~~~~c~~wLd~~~~~sVvyvsfGS~~~~~~~q~~ela~gL~~s~~~FlW~~r~~~~~~~ 314 (451)
T PLN03004 235 RNIYPIGPLIVNGRIEDRNDNKAVSCLNWLDSQPEKSVVFLCFGSLGLFSKEQVIEIAVGLEKSGQRFLWVVRNPPELEK 314 (451)
T ss_pred CCEEEEeeeccCccccccccchhhHHHHHHHhCCCCceEEEEecccccCCHHHHHHHHHHHHHCCCCEEEEEcCCccccc
Confidence 36788888753211 0 113467889877778999999999865 22 233334333333332 2211
Q ss_pred ----CCC-CC---------CCeEECCCCCCHH--HHHhhcCE--EEecCChhhHHHHHHcCCcEEEEeCCCCCChHHHHH
Q 003222 257 ----DSQ-LP---------PNFIKLPKDAYTP--DFMAASDC--MLGKIGYGTVSEALAYKLPFVFVRRDYFNEEPFLRN 318 (838)
Q Consensus 257 ----~~~-lp---------~nv~~~~~~~~~p--dlLa~adl--~It~gG~~Tv~Eal~~GvP~l~iP~~~~~EQ~~Na~ 318 (838)
... +| .|+.+. +|+| ++|+|+++ ||||||+||++|++++|||||++| .+.||+.||+
T Consensus 315 ~~~~~~~~lp~gf~er~~~~g~~v~---~W~PQ~~iL~H~~v~~FvTH~G~nS~lEal~~GVP~v~~P--~~~DQ~~na~ 389 (451)
T PLN03004 315 TELDLKSLLPEGFLSRTEDKGMVVK---SWAPQVPVLNHKAVGGFVTHCGWNSILEAVCAGVPMVAWP--LYAEQRFNRV 389 (451)
T ss_pred cccchhhhCChHHHHhccCCcEEEE---eeCCHHHHhCCCccceEeccCcchHHHHHHHcCCCEEecc--ccccchhhHH
Confidence 111 44 577663 5777 89999776 999999999999999999999999 7999999999
Q ss_pred HHHH-cCcEEEEecC---CCChhhHHHHHHHHhhCCCCccCCCCHHHHHHHHHHHHh
Q 003222 319 MLEF-YQGGVEMIRR---DLLTGHWKPYLERAISLKPCYEGGINGGEVAAHILQETA 371 (838)
Q Consensus 319 ~l~~-~G~g~~l~~~---~~~~~~l~~~l~~ll~~~~~~~~~~~g~~~~a~~i~~~~ 371 (838)
++++ .|+|+.++.. .++.+.+.++|++++.++ ..++.|..|.+.+
T Consensus 390 ~~~~~~g~g~~l~~~~~~~~~~e~l~~av~~vm~~~--------~~r~~a~~~~~~a 438 (451)
T PLN03004 390 MIVDEIKIAISMNESETGFVSSTEVEKRVQEIIGEC--------PVRERTMAMKNAA 438 (451)
T ss_pred HHHHHhCceEEecCCcCCccCHHHHHHHHHHHhcCH--------HHHHHHHHHHHHH
Confidence 9975 6999999754 468899999999998642 3555555555543
|
|
| >PLN02554 UDP-glycosyltransferase family protein | Back alignment and domain information |
|---|
Probab=99.84 E-value=5.6e-19 Score=204.00 Aligned_cols=166 Identities=16% Similarity=0.198 Sum_probs=116.4
Q ss_pred CceeecCcccc--cC-----CcChHHHHHHhCCCCCCcEEEEEcCCCCc-hh----hhHHhhCCCCcEEEEe-CCC----
Q 003222 194 RDVIDVPLVVR--RL-----HKSRKEVRKELGIEDDVKLLILNFGGQPA-GW----KLKEEYLPSGWKCLVC-GAS---- 256 (838)
Q Consensus 194 ~~v~~ip~~~~--~~-----~~~~~~~r~~l~~~~~~~~Vlvs~Gs~~~-~~----~ll~~l~~~~~~~vv~-G~~---- 256 (838)
++++.||++.. .+ ...++++.+|++..+.+++|||||||+.. .. ++...+...++.|++. ...
T Consensus 238 ~~v~~vGpl~~~~~~~~~~~~~~~~~~~~wLd~~~~~svvyvsfGS~~~~~~~~~~~la~~l~~~~~~flW~~~~~~~~~ 317 (481)
T PLN02554 238 PPVYPVGPVLHLENSGDDSKDEKQSEILRWLDEQPPKSVVFLCFGSMGGFSEEQAREIAIALERSGHRFLWSLRRASPNI 317 (481)
T ss_pred CCEEEeCCCccccccccccccccchHHHHHHhcCCCCcEEEEeccccccCCHHHHHHHHHHHHHcCCCeEEEEcCCcccc
Confidence 56888998732 21 12345788999876677899999999854 22 3333444444544432 210
Q ss_pred ---------C-CC-CCC--------CeEECCCCCCHH--HHHh--hcCEEEecCChhhHHHHHHcCCcEEEEeCCCCCCh
Q 003222 257 ---------D-SQ-LPP--------NFIKLPKDAYTP--DFMA--ASDCMLGKIGYGTVSEALAYKLPFVFVRRDYFNEE 313 (838)
Q Consensus 257 ---------~-~~-lp~--------nv~~~~~~~~~p--dlLa--~adl~It~gG~~Tv~Eal~~GvP~l~iP~~~~~EQ 313 (838)
. .. +|+ |+.+ ++|+| ++|+ ++++||||||+||+.|++++|||||++| .+.||
T Consensus 318 ~~~~~~~~~~~~~~lp~~~~~r~~~~g~v---~~W~PQ~~iL~H~~v~~FvtH~G~nS~~Ea~~~GVP~l~~P--~~~DQ 392 (481)
T PLN02554 318 MKEPPGEFTNLEEILPEGFLDRTKDIGKV---IGWAPQVAVLAKPAIGGFVTHCGWNSILESLWFGVPMAAWP--LYAEQ 392 (481)
T ss_pred cccccccccchhhhCChHHHHHhccCceE---EeeCCHHHHhCCcccCcccccCccchHHHHHHcCCCEEecC--ccccc
Confidence 0 01 343 4444 35888 7995 5889999999999999999999999999 89999
Q ss_pred HHHHH-HHHHcCcEEEEec-----------CCCChhhHHHHHHHHhhCCCCccCCCCHHHHHHHHHHHHh
Q 003222 314 PFLRN-MLEFYQGGVEMIR-----------RDLLTGHWKPYLERAISLKPCYEGGINGGEVAAHILQETA 371 (838)
Q Consensus 314 ~~Na~-~l~~~G~g~~l~~-----------~~~~~~~l~~~l~~ll~~~~~~~~~~~g~~~~a~~i~~~~ 371 (838)
+.||+ ++++.|+|+.+.. ..++.+.+.++|++++.+. ...++.|..+.+.+
T Consensus 393 ~~Na~~~v~~~g~Gv~l~~~~~~~~~~~~~~~~~~e~l~~av~~vm~~~-------~~~r~~a~~l~~~~ 455 (481)
T PLN02554 393 KFNAFEMVEELGLAVEIRKYWRGDLLAGEMETVTAEEIERGIRCLMEQD-------SDVRKRVKEMSEKC 455 (481)
T ss_pred hhhHHHHHHHhCceEEeeccccccccccccCeEcHHHHHHHHHHHhcCC-------HHHHHHHHHHHHHH
Confidence 99994 5789999999863 3578899999999998522 34555556665554
|
|
| >PTZ00298 mevalonate kinase; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=2.9e-20 Score=204.79 Aligned_cols=192 Identities=18% Similarity=0.190 Sum_probs=140.6
Q ss_pred EEEccccccccccccccCCCeeeccccccceEEEEEEcCCccchhhhhhhhccCCCCCCCCCeEEEEecccccCCCCCce
Q 003222 499 VARAPGRLDVMGGIADYSGSLVLQMPIREACHVALQKISPSKQRLWKHALARHNDKGQGPMPVLQIVSYGSELSNRGPTF 578 (838)
Q Consensus 499 ~~~APGRv~L~GeH~Dy~gg~vl~~ai~~~~~v~~~~~~d~~~~l~~~~~~~~~~~~~~~~~~i~i~s~~~~~~~~~~~~ 578 (838)
...|||||+|||||+|++|.+++..+|+++..+.+...+.. +.+.+.+
T Consensus 12 ~~~~~~kvil~GEHaVvyg~~aI~~~I~~~d~~~i~~~~~~--------------------~~~~~~~------------ 59 (328)
T PTZ00298 12 KHIGYGKVILFGEHFVVYGAEAIVAGIDEYTECRLELTKGV--------------------PGLQVVD------------ 59 (328)
T ss_pred CCCcCeeEEEEecceeecCCchhhhecccceEEEEEEccCC--------------------CCceecc------------
Confidence 45799999999999999999999999999866666543310 0111111
Q ss_pred eccCCccccCCCCcchhhhhcccCCCCCCChhHHHHHHHHHHHHHhCCCC-CCCEEEEEEeCCCCCCCCChHHHHHHHHH
Q 003222 579 DMDLSDFMDEGKPMSYEKAKKYFDTNPSQKWAAYVAGTILVLMTELGVRF-EDSISMLVSSAVPEGKGVSSSASVEVASM 657 (838)
Q Consensus 579 ~~~l~~~~~~~~p~~~~~~~~~~~~~~~~~w~~y~~g~i~~~~~~~g~~~-~~g~~i~i~s~iP~g~GLgSSAA~~va~~ 657 (838)
+...++ . +. ..-.|.+..+...+.+..|... ..|+++.|.++||+|+|||||||++||++
T Consensus 60 --~~~~~~-----~-~~-----------~~~~n~~~~a~~~~~~~~~~~~~~~g~~I~I~~~IP~gaGLGSSsA~avA~l 120 (328)
T PTZ00298 60 --QRPAVP-----G-YI-----------VEKREEQRKAHQLVLRHLNIDTSVDGLKMHLGGPLVPSSGIGASASDVVSLS 120 (328)
T ss_pred --cccccc-----c-hH-----------HHhHHHHHHHHHHHHHHHhcccCCCCeEEEEECCCCCCCCchHHHHHHHHHH
Confidence 000000 0 00 0114555555666666666532 14999999999999999999999999999
Q ss_pred HHHHHHhCCCCCHHHHHHHHHHHHhhhcCCCCChhhHHHhhcCCCCeEEEEEecCC-ceeeeeccCCCeEEEEEeCCCCC
Q 003222 658 SAIAAAHGLNIHPRDLALLCQKVENHIVGAPCGVMDQMASACGEANKLLAMVCQPA-ELLGVVEIPSHIRFWGIDSGIRH 736 (838)
Q Consensus 658 ~al~~l~~~~l~~~ela~~a~~~E~~~~G~~~G~mDq~a~~~G~~~~~l~~d~~~~-~~~~~v~~~~~~~~vi~~s~~~~ 736 (838)
.|++.+++.++++++++++|+.+|+.++|.+|| +|+.++++||. +++..... +...+++++.++.+++++|++++
T Consensus 121 ~al~~l~~~~ls~~el~~~a~~~E~~~~g~~sG-~D~~~~~~Gg~---~~~~~~~g~~~~~~l~~~~~~~lvv~~~~~~~ 196 (328)
T PTZ00298 121 RALSELYQLNLTEEEVNLSAFVGEGGYHGTPSG-ADNTAATYGGL---ISYRRVNGKSVFKRIAFQQPLYLVVCSTGITA 196 (328)
T ss_pred HHHHHHhCCCCCHHHHHHHHHHHHHHhcCCCCh-HHHHHHHcCCe---EEEecCCCccceeEecCCCCCeEEEEECCCch
Confidence 999999999999999999999999999999999 59999999993 44443222 22356677677889999999998
Q ss_pred cCCCCchhhH
Q 003222 737 SVGGADYGSV 746 (838)
Q Consensus 737 ~~~~~~y~~~ 746 (838)
++. ..|..+
T Consensus 197 sT~-~~~~~v 205 (328)
T PTZ00298 197 STT-KVVGDV 205 (328)
T ss_pred hHH-HHHHHH
Confidence 763 335433
|
|
| >PLN02555 limonoid glucosyltransferase | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.4e-18 Score=199.00 Aligned_cols=331 Identities=16% Similarity=0.121 Sum_probs=187.5
Q ss_pred ecCCCcccHHHHHHHHHHHHHCCCeEEEEeCCC-Cccccc--cc-----C---CCceeeeeeccCCCcccccccccChHH
Q 003222 22 VTGHGFGHATRVVEVVRNLISAGHDVHVVTGAP-DFVFTS--EI-----Q---SPRLFIRKVLLDCGAVQADALTVDRLA 90 (838)
Q Consensus 22 v~g~G~GHv~r~laLA~~L~~~Gh~V~~v~~~~-~~~~~~--~i-----~---~~~~~~~~~~~~~g~~~~~~~~~~~~~ 90 (838)
++.++.||++|++.||+.|+.+|..|||++... ...... .+ . ...+.+... ..|+........+..
T Consensus 13 ~PfpaqGHi~Pml~lA~~La~~G~~vT~v~T~~~~~~~~~a~~~~~~~~~~~~~~~i~~~~~--pdglp~~~~~~~~~~- 89 (480)
T PLN02555 13 VSFPGQGHVNPLLRLGKLLASKGLLVTFVTTESWGKKMRQANKIQDGVLKPVGDGFIRFEFF--EDGWAEDDPRRQDLD- 89 (480)
T ss_pred ECCcccccHHHHHHHHHHHHhCCCeEEEEeccchhhhhhccccccccccccCCCCeEEEeeC--CCCCCCCcccccCHH-
Confidence 578999999999999999999999999997753 111110 00 0 011233221 113221100000111
Q ss_pred HHHHHHHHhhccHHHHHHHHHHHHhc----CCC-cEEEECC-CchHHHHHHHhCCcEEEEecCc------hhHHHHh---
Q 003222 91 SLEKYSETAVAPRKSILKDEVEWLNS----IKA-DLVVSDV-VPVACRAAADAGIRSVCVTNFS------WDFIYAE--- 155 (838)
Q Consensus 91 ~l~~~~~~~~~~~~~~l~~~~~~L~~----~kP-DlVVsD~-~~~~~~aA~~lgIP~V~is~~~------~~~i~~~--- 155 (838)
.+...+. ........++|++ .+| ++||+|. .+|+..+|+.+|||.+.+...+ +..+...
T Consensus 90 ---~~~~~~~---~~~~~~l~~~l~~~~~~~~pv~ciV~D~~~~wa~~vA~~~gIP~~~F~t~~a~~~~~~~~~~~~~~~ 163 (480)
T PLN02555 90 ---LYLPQLE---LVGKREIPNLVKRYAEQGRPVSCLINNPFIPWVCDVAEELGIPSAVLWVQSCACFSAYYHYYHGLVP 163 (480)
T ss_pred ---HHHHHHH---HhhhHHHHHHHHHHhccCCCceEEEECCcchHHHHHHHHcCCCeEEeecccHHHHHHHHHHhhcCCC
Confidence 1111110 0111122333332 345 9999996 8899999999999998763221 0000000
Q ss_pred h-----------hhhccc--------------chHHHHHHHHh---hccccceEEecCCCCC-------CCCCCceeecC
Q 003222 156 Y-----------VMAAGH--------------HHRSIVWQIAE---DYSHCEFLIRLPGYCP-------MPAFRDVIDVP 200 (838)
Q Consensus 156 ~-----------~~~~~~--------------~~~~i~~~l~~---~y~~~d~ll~~~~~~~-------~p~~~~v~~ip 200 (838)
+ ++..+. ....+...+.+ ....++-++.-++... +.....+..+|
T Consensus 164 ~~~~~~~~~~~~iPglp~l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~a~~vlvNTf~eLE~~~~~~l~~~~~v~~iG 243 (480)
T PLN02555 164 FPTETEPEIDVQLPCMPLLKYDEIPSFLHPSSPYPFLRRAILGQYKNLDKPFCILIDTFQELEKEIIDYMSKLCPIKPVG 243 (480)
T ss_pred cccccCCCceeecCCCCCcCHhhCcccccCCCCchHHHHHHHHHHHhcccCCEEEEEchHHHhHHHHHHHhhCCCEEEeC
Confidence 0 000000 00011111111 1122232332222110 00111367788
Q ss_pred cccccC----C-------cChHHHHHHhCCCCCCcEEEEEcCCCCc-h----hhhHHhhCCCCcEEEEe-CC------CC
Q 003222 201 LVVRRL----H-------KSRKEVRKELGIEDDVKLLILNFGGQPA-G----WKLKEEYLPSGWKCLVC-GA------SD 257 (838)
Q Consensus 201 ~~~~~~----~-------~~~~~~r~~l~~~~~~~~Vlvs~Gs~~~-~----~~ll~~l~~~~~~~vv~-G~------~~ 257 (838)
|+...+ . ....++.+||+..+.+++|||||||+.. . .++...+...+..|++. .. ..
T Consensus 244 Pl~~~~~~~~~~~~~~~~~~~~~~~~wLd~~~~~sVvyvsfGS~~~~~~~q~~ela~~l~~~~~~flW~~~~~~~~~~~~ 323 (480)
T PLN02555 244 PLFKMAKTPNSDVKGDISKPADDCIEWLDSKPPSSVVYISFGTVVYLKQEQIDEIAYGVLNSGVSFLWVMRPPHKDSGVE 323 (480)
T ss_pred cccCccccccccccccccccchhHHHHHhCCCCCceeEEEeccccCCCHHHHHHHHHHHHhcCCeEEEEEecCcccccch
Confidence 864311 0 1134677888876667899999999764 1 23333454455554432 21 00
Q ss_pred C-CC--------CCCeEECCCCCCHH--HHHhh--cCEEEecCChhhHHHHHHcCCcEEEEeCCCCCChHHHHHHHHHc-
Q 003222 258 S-QL--------PPNFIKLPKDAYTP--DFMAA--SDCMLGKIGYGTVSEALAYKLPFVFVRRDYFNEEPFLRNMLEFY- 323 (838)
Q Consensus 258 ~-~l--------p~nv~~~~~~~~~p--dlLa~--adl~It~gG~~Tv~Eal~~GvP~l~iP~~~~~EQ~~Na~~l~~~- 323 (838)
. .+ ++|+.+. .|+| ++|+| +.+||||||+||++||+++|||||++| .+.||+.|++++++.
T Consensus 324 ~~~lp~~~~~~~~~~g~v~---~W~PQ~~iL~H~~v~~FvtH~G~nS~~Eai~~GVP~l~~P--~~~DQ~~Na~~~~~~~ 398 (480)
T PLN02555 324 PHVLPEEFLEKAGDKGKIV---QWCPQEKVLAHPSVACFVTHCGWNSTMEALSSGVPVVCFP--QWGDQVTDAVYLVDVF 398 (480)
T ss_pred hhcCChhhhhhcCCceEEE---ecCCHHHHhCCCccCeEEecCCcchHHHHHHcCCCEEeCC--CccccHHHHHHHHHHh
Confidence 0 12 3466554 5777 78865 999999999999999999999999999 899999999999876
Q ss_pred CcEEEEe-----cCCCChhhHHHHHHHHhhCCCCccCCCCHHHHHHHHHHHHh
Q 003222 324 QGGVEMI-----RRDLLTGHWKPYLERAISLKPCYEGGINGGEVAAHILQETA 371 (838)
Q Consensus 324 G~g~~l~-----~~~~~~~~l~~~l~~ll~~~~~~~~~~~g~~~~a~~i~~~~ 371 (838)
|+|+.+. ...++.+.+.++|++++.++ .....++-|..|.+.+
T Consensus 399 gvGv~l~~~~~~~~~v~~~~v~~~v~~vm~~~-----~g~~~r~ra~~l~~~a 446 (480)
T PLN02555 399 KTGVRLCRGEAENKLITREEVAECLLEATVGE-----KAAELKQNALKWKEEA 446 (480)
T ss_pred CceEEccCCccccCcCcHHHHHHHHHHHhcCc-----hHHHHHHHHHHHHHHH
Confidence 9999994 33577889999999998654 2234455555555543
|
|
| >PLN02863 UDP-glucoronosyl/UDP-glucosyl transferase family protein | Back alignment and domain information |
|---|
Probab=99.84 E-value=2e-18 Score=198.25 Aligned_cols=339 Identities=14% Similarity=0.115 Sum_probs=191.6
Q ss_pred EEEEEeecCCCcccHHHHHHHHHHHHHCCCeEEEEeCCCCc-cccccc-CCCceeeeeecc--CCCcccccccccChH-H
Q 003222 16 LVFAYYVTGHGFGHATRVVEVVRNLISAGHDVHVVTGAPDF-VFTSEI-QSPRLFIRKVLL--DCGAVQADALTVDRL-A 90 (838)
Q Consensus 16 ~~Il~~v~g~G~GHv~r~laLA~~L~~~Gh~V~~v~~~~~~-~~~~~i-~~~~~~~~~~~~--~~g~~~~~~~~~~~~-~ 90 (838)
.++++ ++.++.||++|++.||+.|+.+|+.|||++..... ...... ..+.+.+..... ..++........+.. .
T Consensus 10 ~HVvl-~PfpaqGHi~P~l~LAk~La~~G~~VTfv~T~~n~~~~~~~~~~~~~i~~~~lp~P~~~~lPdG~~~~~~~~~~ 88 (477)
T PLN02863 10 THVLV-FPFPAQGHMIPLLDLTHRLALRGLTITVLVTPKNLPFLNPLLSKHPSIETLVLPFPSHPSIPSGVENVKDLPPS 88 (477)
T ss_pred CEEEE-ecCcccchHHHHHHHHHHHHhCCCEEEEEeCCCcHHHHhhhcccCCCeeEEeCCCCCcCCCCCCCcChhhcchh
Confidence 44433 57899999999999999999999999999765211 111111 011222221100 011110000000100 0
Q ss_pred HHHHHHHHhhccHHHHHHHHHHHHhc--CCCcEEEECC-CchHHHHHHHhCCcEEEEecCc---hh---HHHHh------
Q 003222 91 SLEKYSETAVAPRKSILKDEVEWLNS--IKADLVVSDV-VPVACRAAADAGIRSVCVTNFS---WD---FIYAE------ 155 (838)
Q Consensus 91 ~l~~~~~~~~~~~~~~l~~~~~~L~~--~kPDlVVsD~-~~~~~~aA~~lgIP~V~is~~~---~~---~i~~~------ 155 (838)
....+.. ..........++|++ .+|++||+|. .+|+..+|+.+|||.+.+...+ .. .++..
T Consensus 89 ~~~~~~~----a~~~~~~~~~~~l~~~~~~p~cvI~D~f~~Wa~dVA~e~GIP~~~F~t~sA~~~~~~~~~~~~~~~~~~ 164 (477)
T PLN02863 89 GFPLMIH----ALGELYAPLLSWFRSHPSPPVAIISDMFLGWTQNLACQLGIRRFVFSPSGAMALSIMYSLWREMPTKIN 164 (477)
T ss_pred hHHHHHH----HHHHhHHHHHHHHHhCCCCCeEEEEcCchHhHHHHHHHcCCCEEEEeccCHHHHHHHHHHhhccccccc
Confidence 0111111 111223334555655 3679999996 8999999999999998874322 00 01000
Q ss_pred -----------hhhhccc-ch-------------HHHHHHHHhhc---cccceEEecCCCC-------CC-CCC--Ccee
Q 003222 156 -----------YVMAAGH-HH-------------RSIVWQIAEDY---SHCEFLIRLPGYC-------PM-PAF--RDVI 197 (838)
Q Consensus 156 -----------~~~~~~~-~~-------------~~i~~~l~~~y---~~~d~ll~~~~~~-------~~-p~~--~~v~ 197 (838)
.++..+. .. +.....+.... ..++-++.-++.. .+ ..+ +++.
T Consensus 165 ~~~~~~~~~~~~iPg~~~~~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~~~~~~~~~~v~ 244 (477)
T PLN02863 165 PDDQNEILSFSKIPNCPKYPWWQISSLYRSYVEGDPAWEFIKDSFRANIASWGLVVNSFTELEGIYLEHLKKELGHDRVW 244 (477)
T ss_pred ccccccccccCCCCCCCCcChHhCchhhhccCccchHHHHHHHHHhhhccCCEEEEecHHHHHHHHHHHHHhhcCCCCeE
Confidence 0010000 00 00111111111 1223122111110 00 111 3577
Q ss_pred ecCcccccC--C-----------cChHHHHHHhCCCCCCcEEEEEcCCCCch-----hhhHHhhCCCCcEEEE-eCCCC-
Q 003222 198 DVPLVVRRL--H-----------KSRKEVRKELGIEDDVKLLILNFGGQPAG-----WKLKEEYLPSGWKCLV-CGASD- 257 (838)
Q Consensus 198 ~ip~~~~~~--~-----------~~~~~~r~~l~~~~~~~~Vlvs~Gs~~~~-----~~ll~~l~~~~~~~vv-~G~~~- 257 (838)
.|||+.... . ...+++.+||+..+++++|||||||...- .++...+...++.|++ ++...
T Consensus 245 ~IGPL~~~~~~~~~~~~~~~~~~~~~~~~~~WLd~~~~~svVyvsfGS~~~~~~~~~~ela~gL~~~~~~flw~~~~~~~ 324 (477)
T PLN02863 245 AVGPILPLSGEKSGLMERGGPSSVSVDDVMTWLDTCEDHKVVYVCFGSQVVLTKEQMEALASGLEKSGVHFIWCVKEPVN 324 (477)
T ss_pred EeCCCcccccccccccccCCcccccHHHHHHHHhcCCCCceEEEEeeceecCCHHHHHHHHHHHHhCCCcEEEEECCCcc
Confidence 888874311 0 01346788998777789999999998642 2333445455554443 34211
Q ss_pred -----CCCCC---------CeEECCCCCCHH--HHHhh--cCEEEecCChhhHHHHHHcCCcEEEEeCCCCCChHHHHHH
Q 003222 258 -----SQLPP---------NFIKLPKDAYTP--DFMAA--SDCMLGKIGYGTVSEALAYKLPFVFVRRDYFNEEPFLRNM 319 (838)
Q Consensus 258 -----~~lp~---------nv~~~~~~~~~p--dlLa~--adl~It~gG~~Tv~Eal~~GvP~l~iP~~~~~EQ~~Na~~ 319 (838)
..+|+ |+.+. .|+| ++|+| +++||||||+||++||+++|||+|++| .+.||+.|+++
T Consensus 325 ~~~~~~~lp~~~~~r~~~~g~~v~---~w~PQ~~vL~h~~v~~fvtH~G~nS~~Eal~~GvP~l~~P--~~~DQ~~na~~ 399 (477)
T PLN02863 325 EESDYSNIPSGFEDRVAGRGLVIR---GWAPQVAILSHRAVGAFLTHCGWNSVLEGLVAGVPMLAWP--MAADQFVNASL 399 (477)
T ss_pred cccchhhCCHHHHHHhccCCEEec---CCCCHHHHhcCCCcCeEEecCCchHHHHHHHcCCCEEeCC--ccccchhhHHH
Confidence 11444 34443 5777 79987 899999999999999999999999999 78999999999
Q ss_pred HH-HcCcEEEEecC---CCChhhHHHHHHHHhhCCCCccCCCCHHHHHHHHHHHHh
Q 003222 320 LE-FYQGGVEMIRR---DLLTGHWKPYLERAISLKPCYEGGINGGEVAAHILQETA 371 (838)
Q Consensus 320 l~-~~G~g~~l~~~---~~~~~~l~~~l~~ll~~~~~~~~~~~g~~~~a~~i~~~~ 371 (838)
++ +.|+|+.+... ..+.+.+.+++.+++.. ....++.|..|.+.+
T Consensus 400 v~~~~gvG~~~~~~~~~~~~~~~v~~~v~~~m~~-------~~~~r~~a~~l~e~a 448 (477)
T PLN02863 400 LVDELKVAVRVCEGADTVPDSDELARVFMESVSE-------NQVERERAKELRRAA 448 (477)
T ss_pred HHHhhceeEEeccCCCCCcCHHHHHHHHHHHhhc-------cHHHHHHHHHHHHHH
Confidence 75 67999988532 24667888888887732 245566666666654
|
|
| >PLN00164 glucosyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.7e-18 Score=199.45 Aligned_cols=339 Identities=12% Similarity=0.087 Sum_probs=193.5
Q ss_pred CceEEEEEeecCCCcccHHHHHHHHHHHHHCC----CeEEEEeCCCCcc-----cccccC-----CCceeeeeeccCCCc
Q 003222 13 SKHLVFAYYVTGHGFGHATRVVEVVRNLISAG----HDVHVVTGAPDFV-----FTSEIQ-----SPRLFIRKVLLDCGA 78 (838)
Q Consensus 13 m~~~~Il~~v~g~G~GHv~r~laLA~~L~~~G----h~V~~v~~~~~~~-----~~~~i~-----~~~~~~~~~~~~~g~ 78 (838)
|++.++++ ++.++.||++|++.||+.|..+| +.|||++...... ....+. ...+.+... ..+.
T Consensus 1 ~~~~HVVl-vPfpaqGHi~P~l~LAk~La~~g~~~~~~vT~~~t~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l--p~~~ 77 (480)
T PLN00164 1 MAAPTVVL-LPVWGSGHLMSMLEAGKRLLASSGGGALSLTVLVMPPPTPESASEVAAHVRREAASGLDIRFHHL--PAVE 77 (480)
T ss_pred CCCCEEEE-eCCcchhHHHHHHHHHHHHHhCCCCCcEEEEEEEcCCCccchhHHHHHHHhhcccCCCCEEEEEC--CCCC
Confidence 45556644 58899999999999999999986 7899987542110 111110 002333331 1111
Q ss_pred ccccccccChHHHHHHHHHHhhccHHHHHHHHHHHHhcC--CCcEEEECC-CchHHHHHHHhCCcEEEEecCc------h
Q 003222 79 VQADALTVDRLASLEKYSETAVAPRKSILKDEVEWLNSI--KADLVVSDV-VPVACRAAADAGIRSVCVTNFS------W 149 (838)
Q Consensus 79 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~L~~~--kPDlVVsD~-~~~~~~aA~~lgIP~V~is~~~------~ 149 (838)
. +... .+.... +.... ........++|++. ++++||+|+ .+|+..+|+.+|||.+.+...+ +
T Consensus 78 ~-p~~~-e~~~~~---~~~~~----~~~~~~l~~~L~~l~~pv~cIV~D~f~~Wa~dVA~elgIP~v~F~t~sA~~~~~~ 148 (480)
T PLN00164 78 P-PTDA-AGVEEF---ISRYI----QLHAPHVRAAIAGLSCPVAALVVDFFCTPLLDVARELAVPAYVYFTSTAAMLALM 148 (480)
T ss_pred C-CCcc-ccHHHH---HHHHH----HhhhHHHHHHHHhcCCCceEEEECCcchhHHHHHHHhCCCEEEEECccHHHHHHH
Confidence 1 0000 011111 11111 11222334556554 459999996 8899999999999998873322 1
Q ss_pred hHH----------HHhh-----hhhc--------cc-----c---hHHHHHHHHhhccccceEEecCCCC-------CC-
Q 003222 150 DFI----------YAEY-----VMAA--------GH-----H---HRSIVWQIAEDYSHCEFLIRLPGYC-------PM- 190 (838)
Q Consensus 150 ~~i----------~~~~-----~~~~--------~~-----~---~~~i~~~l~~~y~~~d~ll~~~~~~-------~~- 190 (838)
... +... ++.. +. . +..+..+. +....++-++.-++.. .+
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~iPGlp~l~~~dlp~~~~~~~~~~~~~~~~~~-~~~~~~~~vlvNTf~eLE~~~~~~~~ 227 (480)
T PLN00164 149 LRLPALDEEVAVEFEEMEGAVDVPGLPPVPASSLPAPVMDKKSPNYAWFVYHG-RRFMEAAGIIVNTAAELEPGVLAAIA 227 (480)
T ss_pred hhhhhhcccccCcccccCcceecCCCCCCChHHCCchhcCCCcHHHHHHHHHH-HhhhhcCEEEEechHHhhHHHHHHHH
Confidence 000 0000 0000 00 0 01111111 1122233333211110 00
Q ss_pred -----C--CCCceeecCccccc---C--CcChHHHHHHhCCCCCCcEEEEEcCCCCch--h---hhHHhhCCCCcEEE-E
Q 003222 191 -----P--AFRDVIDVPLVVRR---L--HKSRKEVRKELGIEDDVKLLILNFGGQPAG--W---KLKEEYLPSGWKCL-V 252 (838)
Q Consensus 191 -----p--~~~~v~~ip~~~~~---~--~~~~~~~r~~l~~~~~~~~Vlvs~Gs~~~~--~---~ll~~l~~~~~~~v-v 252 (838)
+ ..+.++.|||+... + ....+++.+||+..+.+++|||||||.... . ++...|...+..|+ +
T Consensus 228 ~~~~~~~~~~~~v~~vGPl~~~~~~~~~~~~~~~~~~wLd~~~~~svvyvsfGS~~~~~~~q~~ela~gL~~s~~~flWv 307 (480)
T PLN00164 228 DGRCTPGRPAPTVYPIGPVISLAFTPPAEQPPHECVRWLDAQPPASVVFLCFGSMGFFDAPQVREIAAGLERSGHRFLWV 307 (480)
T ss_pred hccccccCCCCceEEeCCCccccccCCCccchHHHHHHHHhCCCCceEEEEecccccCCHHHHHHHHHHHHHcCCCEEEE
Confidence 0 01468888887531 1 122356889998776788999999997542 2 23334434444443 2
Q ss_pred eCC-CC-----------C-CCCCC---------eEECCCCCCHH--HHHhhcC--EEEecCChhhHHHHHHcCCcEEEEe
Q 003222 253 CGA-SD-----------S-QLPPN---------FIKLPKDAYTP--DFMAASD--CMLGKIGYGTVSEALAYKLPFVFVR 306 (838)
Q Consensus 253 ~G~-~~-----------~-~lp~n---------v~~~~~~~~~p--dlLa~ad--l~It~gG~~Tv~Eal~~GvP~l~iP 306 (838)
+.. .. . .+|+| +.+ ..|+| ++|+|.+ +||||||+||++|++++|||||++|
T Consensus 308 ~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~g~~v---~~w~PQ~~iL~h~~vg~fvtH~GwnS~~Eai~~GVP~l~~P 384 (480)
T PLN00164 308 LRGPPAAGSRHPTDADLDELLPEGFLERTKGRGLVW---PTWAPQKEILAHAAVGGFVTHCGWNSVLESLWHGVPMAPWP 384 (480)
T ss_pred EcCCcccccccccccchhhhCChHHHHHhcCCCeEE---eecCCHHHHhcCcccCeEEeecccchHHHHHHcCCCEEeCC
Confidence 221 10 0 14555 333 25787 7998854 8999999999999999999999999
Q ss_pred CCCCCChHHHHHHHH-HcCcEEEEecC-----CCChhhHHHHHHHHhhCCCCccCCCCHHHHHHHHHHHHhc
Q 003222 307 RDYFNEEPFLRNMLE-FYQGGVEMIRR-----DLLTGHWKPYLERAISLKPCYEGGINGGEVAAHILQETAI 372 (838)
Q Consensus 307 ~~~~~EQ~~Na~~l~-~~G~g~~l~~~-----~~~~~~l~~~l~~ll~~~~~~~~~~~g~~~~a~~i~~~~~ 372 (838)
.+.||+.|+++++ ..|+|+.+..+ .++.+.+.++|++++.+. .+ .....++-|..|.+.+.
T Consensus 385 --~~~DQ~~Na~~~~~~~gvG~~~~~~~~~~~~~~~e~l~~av~~vm~~~-~~--~~~~~r~~a~~~~~~~~ 451 (480)
T PLN00164 385 --LYAEQHLNAFELVADMGVAVAMKVDRKRDNFVEAAELERAVRSLMGGG-EE--EGRKAREKAAEMKAACR 451 (480)
T ss_pred --ccccchhHHHHHHHHhCeEEEeccccccCCcCcHHHHHHHHHHHhcCC-ch--hHHHHHHHHHHHHHHHH
Confidence 8999999998874 68999988532 257889999999999654 11 12346666666666543
|
|
| >PLN02152 indole-3-acetate beta-glucosyltransferase | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.6e-18 Score=197.42 Aligned_cols=336 Identities=15% Similarity=0.152 Sum_probs=186.4
Q ss_pred CceEEEEEeecCCCcccHHHHHHHHHHHHH-CCCeEEEEeCCCCcccccccC----CCceeeeeeccCCCccccc-cccc
Q 003222 13 SKHLVFAYYVTGHGFGHATRVVEVVRNLIS-AGHDVHVVTGAPDFVFTSEIQ----SPRLFIRKVLLDCGAVQAD-ALTV 86 (838)
Q Consensus 13 m~~~~Il~~v~g~G~GHv~r~laLA~~L~~-~Gh~V~~v~~~~~~~~~~~i~----~~~~~~~~~~~~~g~~~~~-~~~~ 86 (838)
|++.++++ ++.++.||++|++.||+.|+. +|+.|||++...... ..... .+.+.+... ..|+.... ....
T Consensus 1 ~~~~hvv~-~P~p~qGHi~P~l~La~~La~~~G~~vT~v~t~~~~~-~~~~~~~~~~~~i~~~~i--~dglp~g~~~~~~ 76 (455)
T PLN02152 1 MAPPHFLL-VTFPAQGHVNPSLRFARRLIKTTGTRVTFATCLSVIH-RSMIPNHNNVENLSFLTF--SDGFDDGVISNTD 76 (455)
T ss_pred CCCcEEEE-ecCcccccHHHHHHHHHHHhhCCCcEEEEEeccchhh-hhhhccCCCCCCEEEEEc--CCCCCCccccccc
Confidence 44445543 588999999999999999996 699999997752111 11111 113444432 12322100 0011
Q ss_pred ChHHHHHHHHHHhhccHHHHHHHHHHHHhc----CCC-cEEEECC-CchHHHHHHHhCCcEEEEecCc-hh-HHHHhh--
Q 003222 87 DRLASLEKYSETAVAPRKSILKDEVEWLNS----IKA-DLVVSDV-VPVACRAAADAGIRSVCVTNFS-WD-FIYAEY-- 156 (838)
Q Consensus 87 ~~~~~l~~~~~~~~~~~~~~l~~~~~~L~~----~kP-DlVVsD~-~~~~~~aA~~lgIP~V~is~~~-~~-~i~~~~-- 156 (838)
+....+..... . ......++|++ -+| ++||+|. .+|+..+|+.+|||.+.+...+ +. ..+..+
T Consensus 77 ~~~~~~~~~~~----~---~~~~l~~~l~~l~~~~~pv~ciV~D~~~~wa~dvA~~lgIP~~~f~t~~a~~~~~~~~~~~ 149 (455)
T PLN02152 77 DVQNRLVNFER----N---GDKALSDFIEANLNGDSPVTCLIYTILPNWAPKVARRFHLPSVLLWIQPAFVFDIYYNYST 149 (455)
T ss_pred cHHHHHHHHHH----h---ccHHHHHHHHHhhccCCCceEEEECCccHhHHHHHHHhCCCEEEEECccHHHHHHHHHhhc
Confidence 11111111111 1 11122333332 134 9999996 8899999999999998874322 00 001000
Q ss_pred -------hhhccc----c----------hHHHHH---HHHhhccc--cceEEecCCCC-------CCCCCCceeecCccc
Q 003222 157 -------VMAAGH----H----------HRSIVW---QIAEDYSH--CEFLIRLPGYC-------PMPAFRDVIDVPLVV 203 (838)
Q Consensus 157 -------~~~~~~----~----------~~~i~~---~l~~~y~~--~d~ll~~~~~~-------~~p~~~~v~~ip~~~ 203 (838)
++..+. . .+.... +....... ++-++.-++.. .+.. .+++.|||+.
T Consensus 150 ~~~~~~~iPglp~l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~l~~-~~v~~VGPL~ 228 (455)
T PLN02152 150 GNNSVFEFPNLPSLEIRDLPSFLSPSNTNKAAQAVYQELMEFLKEESNPKILVNTFDSLEPEFLTAIPN-IEMVAVGPLL 228 (455)
T ss_pred cCCCeeecCCCCCCchHHCchhhcCCCCchhHHHHHHHHHHHhhhccCCEEEEeChHHhhHHHHHhhhc-CCEEEEcccC
Confidence 111000 0 000001 11111111 22233222211 0111 2577888875
Q ss_pred ccC----C---------cChHHHHHHhCCCCCCcEEEEEcCCCCc-h----hhhHHhhCCCCcEE--EEeCCC-------
Q 003222 204 RRL----H---------KSRKEVRKELGIEDDVKLLILNFGGQPA-G----WKLKEEYLPSGWKC--LVCGAS------- 256 (838)
Q Consensus 204 ~~~----~---------~~~~~~r~~l~~~~~~~~Vlvs~Gs~~~-~----~~ll~~l~~~~~~~--vv~G~~------- 256 (838)
... . ....++.+||+..+.+++|||||||+.. . .++...+...+..| ++-...
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~wLd~~~~~sVvyvsfGS~~~l~~~q~~ela~gL~~s~~~flWv~r~~~~~~~~~~ 308 (455)
T PLN02152 229 PAEIFTGSESGKDLSVRDQSSSYTLWLDSKTESSVIYVSFGTMVELSKKQIEELARALIEGKRPFLWVITDKLNREAKIE 308 (455)
T ss_pred ccccccccccCccccccccchHHHHHhhCCCCCceEEEEecccccCCHHHHHHHHHHHHHcCCCeEEEEecCcccccccc
Confidence 311 0 1123578899877678999999999864 2 22333343333333 332210
Q ss_pred -C--------CC----CCCCeEECCCCCCHH--HHHhh--cCEEEecCChhhHHHHHHcCCcEEEEeCCCCCChHHHHHH
Q 003222 257 -D--------SQ----LPPNFIKLPKDAYTP--DFMAA--SDCMLGKIGYGTVSEALAYKLPFVFVRRDYFNEEPFLRNM 319 (838)
Q Consensus 257 -~--------~~----lp~nv~~~~~~~~~p--dlLa~--adl~It~gG~~Tv~Eal~~GvP~l~iP~~~~~EQ~~Na~~ 319 (838)
. +. .++|..+. +|+| ++|+| +.+||||||+||++|++++|||+|++| .+.||+.||++
T Consensus 309 ~~~~~~~~~~~~f~e~~~~~g~v~---~W~PQ~~iL~h~~vg~fvtH~G~nS~~Ea~~~GvP~l~~P--~~~DQ~~na~~ 383 (455)
T PLN02152 309 GEEETEIEKIAGFRHELEEVGMIV---SWCSQIEVLRHRAVGCFVTHCGWSSSLESLVLGVPVVAFP--MWSDQPANAKL 383 (455)
T ss_pred cccccccccchhHHHhccCCeEEE---eeCCHHHHhCCcccceEEeeCCcccHHHHHHcCCCEEecc--ccccchHHHHH
Confidence 0 00 23455553 5888 89988 558999999999999999999999999 79999999999
Q ss_pred HHH-cCcEEEEe--cCC-CChhhHHHHHHHHhhCCCCccCCCCHHHHHHHHHHHHh
Q 003222 320 LEF-YQGGVEMI--RRD-LLTGHWKPYLERAISLKPCYEGGINGGEVAAHILQETA 371 (838)
Q Consensus 320 l~~-~G~g~~l~--~~~-~~~~~l~~~l~~ll~~~~~~~~~~~g~~~~a~~i~~~~ 371 (838)
+++ .|+|+.+. ..+ ++.+.+.++|++++.++ ....++.|..|.+.+
T Consensus 384 ~~~~~~~G~~~~~~~~~~~~~e~l~~av~~vm~~~------~~~~r~~a~~~~~~~ 433 (455)
T PLN02152 384 LEEIWKTGVRVRENSEGLVERGEIRRCLEAVMEEK------SVELRESAEKWKRLA 433 (455)
T ss_pred HHHHhCceEEeecCcCCcCcHHHHHHHHHHHHhhh------HHHHHHHHHHHHHHH
Confidence 987 35555553 333 47889999999999633 123455555555543
|
|
| >COG2605 Predicted kinase related to galactokinase and mevalonate kinase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.83 E-value=5.7e-20 Score=187.71 Aligned_cols=187 Identities=26% Similarity=0.318 Sum_probs=140.5
Q ss_pred EEEEccccccccccccccC------CCeeeccccccceEEEEEEcCCccchhhhhhhhccCCCCCCCCCeEEEEeccccc
Q 003222 498 FVARAPGRLDVMGGIADYS------GSLVLQMPIREACHVALQKISPSKQRLWKHALARHNDKGQGPMPVLQIVSYGSEL 571 (838)
Q Consensus 498 ~~~~APGRv~L~GeH~Dy~------gg~vl~~ai~~~~~v~~~~~~d~~~~l~~~~~~~~~~~~~~~~~~i~i~s~~~~~ 571 (838)
++.+||-|+.+.|+-||+. ||.|++++||+++|+.+.+..|.++++. .+
T Consensus 2 ii~raPLRItfgGGGTDvepy~~k~GGaVlnatIdky~y~~i~~~~d~~I~~~----------------------~~--- 56 (333)
T COG2605 2 IISRAPLRITFGGGGTDVEPYCSKHGGAVLNATIDKYIYVTIEKGFDDEIRVR----------------------YD--- 56 (333)
T ss_pred cccccceEEEecCCCcCchHHHHhcCCEEEEeeeeeEEEEEEccCCCceEEEe----------------------cc---
Confidence 4667999999999999997 9999999999999999999887664422 00
Q ss_pred CCCCCceeccCCccccCCCCcchhhhhcccCCCCCCChhHHHHHHHHH-HHHHhCCCCCCCEEEEEEeCCCCCCCCChHH
Q 003222 572 SNRGPTFDMDLSDFMDEGKPMSYEKAKKYFDTNPSQKWAAYVAGTILV-LMTELGVRFEDSISMLVSSAVPEGKGVSSSA 650 (838)
Q Consensus 572 ~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~~~~~~w~~y~~g~i~~-~~~~~g~~~~~g~~i~i~s~iP~g~GLgSSA 650 (838)
+ . + ..++ ++.++ ++ ..++.++.. ++...|. ..+++...+++|+|+|||||+
T Consensus 57 --~--~-~-~v~~------~~~~~-----------h~--~~~~~~l~r~~l~~~g~---~~~el~~~~D~P~GSGLGSSS 108 (333)
T COG2605 57 --R--T-E-FVKS------YLENE-----------HK--PLVVESLKRDFLEFNGG---TPIELHTQSDAPPGSGLGSSS 108 (333)
T ss_pred --h--H-H-hhhh------hHhhc-----------Cc--hHHHHHHHHHHHhhcCC---CceEEEEecCCCCCCCCCchH
Confidence 0 0 0 0011 11111 11 223443332 3322222 129999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhhhcCCCCChhhHHHhhcCCCCeEEEEEecCCc-e-eeeeccC------
Q 003222 651 SVEVASMSAIAAAHGLNIHPRDLALLCQKVENHIVGAPCGVMDQMASACGEANKLLAMVCQPAE-L-LGVVEIP------ 722 (838)
Q Consensus 651 A~~va~~~al~~l~~~~l~~~ela~~a~~~E~~~~G~~~G~mDq~a~~~G~~~~~l~~d~~~~~-~-~~~v~~~------ 722 (838)
|+.||+..|+..+-|..+++.+||+.|+.+|++..+.+.|.+||++++|||.|. +.++... + +.++.+.
T Consensus 109 a~vvaLl~a~~~~kg~~~~~~~LA~eAy~IER~~l~~~gG~QDqYaaA~GGFnf---MEf~~~~~V~v~pL~i~~e~~~E 185 (333)
T COG2605 109 AFVVALLNALHAWKGESLGPYELAREAYEIEREDLKIVGGKQDQYAAAFGGFNF---MEFRGNGEVVVNPLRINRERTAE 185 (333)
T ss_pred HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhccccccccHHHHHhCCceE---EEEcCCCcEEEeecccchhHHHH
Confidence 999999999999999999999999999999999999999999999999999764 4555443 2 3455553
Q ss_pred CCeEEEEEeCCCCCcCCC
Q 003222 723 SHIRFWGIDSGIRHSVGG 740 (838)
Q Consensus 723 ~~~~~vi~~s~~~~~~~~ 740 (838)
...++++++||+.|...+
T Consensus 186 le~~~lL~yTGi~R~Ss~ 203 (333)
T COG2605 186 LEARLLLYYTGITRQSSE 203 (333)
T ss_pred HHhceEEEEeccccchhH
Confidence 256889999999998653
|
|
| >PLN02167 UDP-glycosyltransferase family protein | Back alignment and domain information |
|---|
Probab=99.82 E-value=6.4e-18 Score=194.94 Aligned_cols=166 Identities=14% Similarity=0.179 Sum_probs=116.3
Q ss_pred CceeecCccccc-C---Cc----ChHHHHHHhCCCCCCcEEEEEcCCCCc-h----hhhHHhhCCCCcEEEE-eCCC-C-
Q 003222 194 RDVIDVPLVVRR-L---HK----SRKEVRKELGIEDDVKLLILNFGGQPA-G----WKLKEEYLPSGWKCLV-CGAS-D- 257 (838)
Q Consensus 194 ~~v~~ip~~~~~-~---~~----~~~~~r~~l~~~~~~~~Vlvs~Gs~~~-~----~~ll~~l~~~~~~~vv-~G~~-~- 257 (838)
++++.|||+... . .. ..+++.+|++..+.+++|||||||+.. . .++...+...++.|++ ++.. .
T Consensus 243 p~v~~vGpl~~~~~~~~~~~~~~~~~~~~~wld~~~~~svvyvsfGS~~~~~~~~~~ela~~l~~~~~~flw~~~~~~~~ 322 (475)
T PLN02167 243 PPVYPVGPILSLKDRTSPNLDSSDRDRIMRWLDDQPESSVVFLCFGSLGSLPAPQIKEIAQALELVGCRFLWSIRTNPAE 322 (475)
T ss_pred CeeEEeccccccccccCCCCCcchhHHHHHHHhcCCCCceEEEeecccccCCHHHHHHHHHHHHhCCCcEEEEEecCccc
Confidence 567888886531 1 11 125688899877678899999999854 2 2333344445555443 3321 1
Q ss_pred ----C-CCCCCe--------EECCCCCCHH--HHHhh--cCEEEecCChhhHHHHHHcCCcEEEEeCCCCCChHHHHHH-
Q 003222 258 ----S-QLPPNF--------IKLPKDAYTP--DFMAA--SDCMLGKIGYGTVSEALAYKLPFVFVRRDYFNEEPFLRNM- 319 (838)
Q Consensus 258 ----~-~lp~nv--------~~~~~~~~~p--dlLa~--adl~It~gG~~Tv~Eal~~GvP~l~iP~~~~~EQ~~Na~~- 319 (838)
. .+|+|+ .+ +.|+| ++|+| +++||||||+||++||+++|||||++| .+.||+.|+++
T Consensus 323 ~~~~~~~lp~~~~er~~~rg~v---~~w~PQ~~iL~h~~vg~fvtH~G~nS~~Eal~~GvP~l~~P--~~~DQ~~na~~~ 397 (475)
T PLN02167 323 YASPYEPLPEGFMDRVMGRGLV---CGWAPQVEILAHKAIGGFVSHCGWNSVLESLWFGVPIATWP--MYAEQQLNAFTM 397 (475)
T ss_pred ccchhhhCChHHHHHhccCeee---eccCCHHHHhcCcccCeEEeeCCcccHHHHHHcCCCEEecc--ccccchhhHHHH
Confidence 0 156653 23 35888 78987 789999999999999999999999999 88999999976
Q ss_pred HHHcCcEEEEecC-------CCChhhHHHHHHHHhhCCCCccCCCCHHHHHHHHHHHHh
Q 003222 320 LEFYQGGVEMIRR-------DLLTGHWKPYLERAISLKPCYEGGINGGEVAAHILQETA 371 (838)
Q Consensus 320 l~~~G~g~~l~~~-------~~~~~~l~~~l~~ll~~~~~~~~~~~g~~~~a~~i~~~~ 371 (838)
++..|+|+.+... .++.+.+.++|++++.+. ...++.|..+.+.+
T Consensus 398 ~~~~g~g~~~~~~~~~~~~~~~~~~~l~~av~~~m~~~-------~~~r~~a~~~~~~~ 449 (475)
T PLN02167 398 VKELGLAVELRLDYVSAYGEIVKADEIAGAVRSLMDGE-------DVPRKKVKEIAEAA 449 (475)
T ss_pred HHHhCeeEEeecccccccCCcccHHHHHHHHHHHhcCC-------HHHHHHHHHHHHHH
Confidence 6799999988642 357889999999998643 23444455555443
|
|
| >PRK00726 murG undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=6.2e-18 Score=189.03 Aligned_cols=324 Identities=18% Similarity=0.051 Sum_probs=192.6
Q ss_pred EEEEEeecCCCcccHHHHHHHHHHHHHCCCeEEEEeCCCCcccccccCCCceeeeeeccCCCcccccccccChHHHHHHH
Q 003222 16 LVFAYYVTGHGFGHATRVVEVVRNLISAGHDVHVVTGAPDFVFTSEIQSPRLFIRKVLLDCGAVQADALTVDRLASLEKY 95 (838)
Q Consensus 16 ~~Il~~v~g~G~GHv~r~laLA~~L~~~Gh~V~~v~~~~~~~~~~~i~~~~~~~~~~~~~~g~~~~~~~~~~~~~~l~~~ 95 (838)
|+|++...|.| ||...++.+|++|.++||+|++++...... .......++.+..... .+.. .......+...
T Consensus 2 ~~i~i~~~g~g-G~~~~~~~la~~L~~~g~ev~vv~~~~~~~-~~~~~~~g~~~~~~~~-~~~~-----~~~~~~~l~~~ 73 (357)
T PRK00726 2 KKILLAGGGTG-GHVFPALALAEELKKRGWEVLYLGTARGME-ARLVPKAGIEFHFIPS-GGLR-----RKGSLANLKAP 73 (357)
T ss_pred cEEEEEcCcch-HhhhHHHHHHHHHHhCCCEEEEEECCCchh-hhccccCCCcEEEEec-cCcC-----CCChHHHHHHH
Confidence 56766666676 999999999999999999999998743211 1111111222222110 0100 00111111112
Q ss_pred HHHhhccHHHHHHHHHHHHhcCCCcEEEECCC---chHHHHHHHhCCcEEEEecCchhHHHHhhhhhcccchHHHHHHHH
Q 003222 96 SETAVAPRKSILKDEVEWLNSIKADLVVSDVV---PVACRAAADAGIRSVCVTNFSWDFIYAEYVMAAGHHHRSIVWQIA 172 (838)
Q Consensus 96 ~~~~~~~~~~~l~~~~~~L~~~kPDlVVsD~~---~~~~~aA~~lgIP~V~is~~~~~~i~~~~~~~~~~~~~~i~~~l~ 172 (838)
..+ ...+....+++++.+||+|+++.. ..+..+++..++|+|.+....|......+.
T Consensus 74 ~~~-----~~~~~~~~~~ik~~~pDvv~~~~~~~~~~~~~~~~~~~~p~v~~~~~~~~~~~~r~~--------------- 133 (357)
T PRK00726 74 FKL-----LKGVLQARKILKRFKPDVVVGFGGYVSGPGGLAARLLGIPLVIHEQNAVPGLANKLL--------------- 133 (357)
T ss_pred HHH-----HHHHHHHHHHHHhcCCCEEEECCCcchhHHHHHHHHcCCCEEEEcCCCCccHHHHHH---------------
Confidence 111 123445567789999999998852 234556677899998763322110000000
Q ss_pred hhccccceEEecCC---CCCCCCCCceeecCcccccCCcChHHHHHHhCCCCCCcEEEEEcCCCCch--hhhH-Hh---h
Q 003222 173 EDYSHCEFLIRLPG---YCPMPAFRDVIDVPLVVRRLHKSRKEVRKELGIEDDVKLLILNFGGQPAG--WKLK-EE---Y 243 (838)
Q Consensus 173 ~~y~~~d~ll~~~~---~~~~p~~~~v~~ip~~~~~~~~~~~~~r~~l~~~~~~~~Vlvs~Gs~~~~--~~ll-~~---l 243 (838)
+..++.++.... ....+....+++.|+....... ...++.++.+++.++|++..|+.+.. ..++ +. +
T Consensus 134 --~~~~d~ii~~~~~~~~~~~~~~i~vi~n~v~~~~~~~--~~~~~~~~~~~~~~~i~~~gg~~~~~~~~~~l~~a~~~~ 209 (357)
T PRK00726 134 --ARFAKKVATAFPGAFPEFFKPKAVVTGNPVREEILAL--AAPPARLAGREGKPTLLVVGGSQGARVLNEAVPEALALL 209 (357)
T ss_pred --HHHhchheECchhhhhccCCCCEEEECCCCChHhhcc--cchhhhccCCCCCeEEEEECCcHhHHHHHHHHHHHHHHh
Confidence 001111111000 0000111123333433221111 11223456555666777766655432 2233 22 2
Q ss_pred CCCCcEEEEeCCCCCC-------CCCCeEECCCCCCHHHHHhhcCEEEecCChhhHHHHHHcCCcEEEEeCCC--CCChH
Q 003222 244 LPSGWKCLVCGASDSQ-------LPPNFIKLPKDAYTPDFMAASDCMLGKIGYGTVSEALAYKLPFVFVRRDY--FNEEP 314 (838)
Q Consensus 244 ~~~~~~~vv~G~~~~~-------lp~nv~~~~~~~~~pdlLa~adl~It~gG~~Tv~Eal~~GvP~l~iP~~~--~~EQ~ 314 (838)
......++++|....+ ++.+|.+.+|.++++++|+.||++|+++|.++++||+++|+|+|++|... ..||.
T Consensus 210 ~~~~~~~~~~G~g~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~d~~i~~~g~~~~~Ea~~~g~Pvv~~~~~~~~~~~~~ 289 (357)
T PRK00726 210 PEALQVIHQTGKGDLEEVRAAYAAGINAEVVPFIDDMAAAYAAADLVICRAGASTVAELAAAGLPAILVPLPHAADDHQT 289 (357)
T ss_pred hhCcEEEEEcCCCcHHHHHHHhhcCCcEEEeehHhhHHHHHHhCCEEEECCCHHHHHHHHHhCCCEEEecCCCCCcCcHH
Confidence 1111345567865421 22247888988888999999999999999999999999999999999632 46888
Q ss_pred HHHHHHHHcCcEEEEecCCCChhhHHHHHHHHhhCCCCcc---------CCCCHHHHHHHHHHHHh
Q 003222 315 FLRNMLEFYQGGVEMIRRDLLTGHWKPYLERAISLKPCYE---------GGINGGEVAAHILQETA 371 (838)
Q Consensus 315 ~Na~~l~~~G~g~~l~~~~~~~~~l~~~l~~ll~~~~~~~---------~~~~g~~~~a~~i~~~~ 371 (838)
.|++.+.+.|.|..+...+++++.+.++|+++++++..+. ....++.++++.|.+++
T Consensus 290 ~~~~~i~~~~~g~~~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (357)
T PRK00726 290 ANARALVDAGAALLIPQSDLTPEKLAEKLLELLSDPERLEAMAEAARALGKPDAAERLADLIEELA 355 (357)
T ss_pred HHHHHHHHCCCEEEEEcccCCHHHHHHHHHHHHcCHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHh
Confidence 9999999999999999888888999999999998754321 57788888888888764
|
|
| >PLN03015 UDP-glucosyl transferase | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.7e-17 Score=188.75 Aligned_cols=341 Identities=14% Similarity=0.145 Sum_probs=191.2
Q ss_pred CceEEEEEeecCCCcccHHHHHHHHHHHHHC-CCeEEEEeCCC-C-ccc-ccccC----CCceeeeeeccCCCccccccc
Q 003222 13 SKHLVFAYYVTGHGFGHATRVVEVVRNLISA-GHDVHVVTGAP-D-FVF-TSEIQ----SPRLFIRKVLLDCGAVQADAL 84 (838)
Q Consensus 13 m~~~~Il~~v~g~G~GHv~r~laLA~~L~~~-Gh~V~~v~~~~-~-~~~-~~~i~----~~~~~~~~~~~~~g~~~~~~~ 84 (838)
|.+.++++ ++.+|.||++|++.||+.|+.+ |..|||++... . ... ...+. ...+.+... ..+.. +.+
T Consensus 1 ~~~pHvvl-~P~p~qGHi~P~l~LAk~La~~~g~~vT~v~t~~~~~~~~~~~~~~~~~~~~~i~~~~l--p~~~~--~~l 75 (470)
T PLN03015 1 MDQPHALL-VASPGLGHLIPILELGNRLSSVLNIHVTILAVTSGSSSPTETEAIHAAAARTTCQITEI--PSVDV--DNL 75 (470)
T ss_pred CCCcEEEE-ECCcccccHHHHHHHHHHHHhCCCCeEEEEECCCchhhhccccccccccCCCceEEEEC--CCCcc--ccC
Confidence 34445543 5889999999999999999977 89999986542 1 111 11111 012333221 11110 111
Q ss_pred -ccChHHHHHHHHHHhhccHHHHHHHHHHHHhcC--CCcEEEECC-CchHHHHHHHhCCc-EEEEecCc-hhH-HH----
Q 003222 85 -TVDRLASLEKYSETAVAPRKSILKDEVEWLNSI--KADLVVSDV-VPVACRAAADAGIR-SVCVTNFS-WDF-IY---- 153 (838)
Q Consensus 85 -~~~~~~~l~~~~~~~~~~~~~~l~~~~~~L~~~--kPDlVVsD~-~~~~~~aA~~lgIP-~V~is~~~-~~~-i~---- 153 (838)
..+. .....+.... ..+.....++|++. +|++||+|. .+|+..+|+.+||| .+.+...+ +.. .+
T Consensus 76 ~~~~~-~~~~~~~~~~----~~~~~~~~~~l~~l~~~~~ciV~D~f~~w~~~vA~~lgIP~~~~f~~~~a~~~~~~~~l~ 150 (470)
T PLN03015 76 VEPDA-TIFTKMVVKM----RAMKPAVRDAVKSMKRKPTVMIVDFFGTALMSIADDVGVTAKYVYIPSHAWFLAVMVYLP 150 (470)
T ss_pred CCCCc-cHHHHHHHHH----HhchHHHHHHHHhcCCCCeEEEEcCCcHHHHHHHHHcCCCEEEEEcCHHHHHHHHHHhhh
Confidence 0010 0111121111 11223335556544 689999996 88999999999999 45552211 000 00
Q ss_pred --H----h-h--------hhhccc-c---hH--------HHHHHHHh---hccccceEEecCCCC-------CCCC----
Q 003222 154 --A----E-Y--------VMAAGH-H---HR--------SIVWQIAE---DYSHCEFLIRLPGYC-------PMPA---- 192 (838)
Q Consensus 154 --~----~-~--------~~~~~~-~---~~--------~i~~~l~~---~y~~~d~ll~~~~~~-------~~p~---- 192 (838)
. . + ++..+. . .. .....+.+ ....++-++.-++.. .+..
T Consensus 151 ~~~~~~~~~~~~~~~~~~vPg~p~l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~a~gvlvNTf~eLE~~~~~~l~~~~~~ 230 (470)
T PLN03015 151 VLDTVVEGEYVDIKEPLKIPGCKPVGPKELMETMLDRSDQQYKECVRSGLEVPMSDGVLVNTWEELQGNTLAALREDMEL 230 (470)
T ss_pred hhhcccccccCCCCCeeeCCCCCCCChHHCCHhhcCCCcHHHHHHHHHHHhcccCCEEEEechHHHhHHHHHHHHhhccc
Confidence 0 0 0 010000 0 00 00001111 122233233212211 0000
Q ss_pred ----CCceeecCccccc--CCcChHHHHHHhCCCCCCcEEEEEcCCCCch-----hhhHHhhCCCCcEEEE-eCC-----
Q 003222 193 ----FRDVIDVPLVVRR--LHKSRKEVRKELGIEDDVKLLILNFGGQPAG-----WKLKEEYLPSGWKCLV-CGA----- 255 (838)
Q Consensus 193 ----~~~v~~ip~~~~~--~~~~~~~~r~~l~~~~~~~~Vlvs~Gs~~~~-----~~ll~~l~~~~~~~vv-~G~----- 255 (838)
.++++.|||+... .....+++.+||+..+.+++|||||||...- .++...|...+..|++ ...
T Consensus 231 ~~~~~~~v~~VGPl~~~~~~~~~~~~~~~WLd~~~~~sVvyvsFGS~~~~~~~q~~ela~gl~~s~~~FlWv~r~~~~~~ 310 (470)
T PLN03015 231 NRVMKVPVYPIGPIVRTNVHVEKRNSIFEWLDKQGERSVVYVCLGSGGTLTFEQTVELAWGLELSGQRFVWVLRRPASYL 310 (470)
T ss_pred ccccCCceEEecCCCCCcccccchHHHHHHHHhCCCCCEEEEECCcCCcCCHHHHHHHHHHHHhCCCcEEEEEecCcccc
Confidence 1357888887532 1122346889998777789999999999752 1233344333333332 211
Q ss_pred -------C-CC-CCCCC---------eEECCCCCCHH--HHHhh--cCEEEecCChhhHHHHHHcCCcEEEEeCCCCCCh
Q 003222 256 -------S-DS-QLPPN---------FIKLPKDAYTP--DFMAA--SDCMLGKIGYGTVSEALAYKLPFVFVRRDYFNEE 313 (838)
Q Consensus 256 -------~-~~-~lp~n---------v~~~~~~~~~p--dlLa~--adl~It~gG~~Tv~Eal~~GvP~l~iP~~~~~EQ 313 (838)
. .. .+|+| +.+ ..|+| ++|+| +.+||||||+||++|++++|||||++| .+.||
T Consensus 311 ~~~~~~~~~~~~~lp~~f~er~~~rGl~v---~~W~PQ~~vL~h~~vg~fvtH~GwnS~~Eai~~GvP~v~~P--~~~DQ 385 (470)
T PLN03015 311 GASSSDDDQVSASLPEGFLDRTRGVGLVV---TQWAPQVEILSHRSIGGFLSHCGWSSVLESLTKGVPIVAWP--LYAEQ 385 (470)
T ss_pred ccccccccchhhcCChHHHHhhccCceEE---EecCCHHHHhccCccCeEEecCCchhHHHHHHcCCCEEecc--cccch
Confidence 0 11 25666 333 25888 78887 778999999999999999999999999 79999
Q ss_pred HHHHHHH-HHcCcEEEEec----CCCChhhHHHHHHHHhhCCCCccCCCCHHHHHHHHHHHHh
Q 003222 314 PFLRNML-EFYQGGVEMIR----RDLLTGHWKPYLERAISLKPCYEGGINGGEVAAHILQETA 371 (838)
Q Consensus 314 ~~Na~~l-~~~G~g~~l~~----~~~~~~~l~~~l~~ll~~~~~~~~~~~g~~~~a~~i~~~~ 371 (838)
+.||+++ +..|+|+.+.. ..++.+.+..+|++++... . ......++-|..|.+.+
T Consensus 386 ~~na~~~~~~~gvg~~~~~~~~~~~v~~e~i~~~v~~lm~~~-~--eeg~~~R~ra~~lk~~a 445 (470)
T PLN03015 386 WMNATLLTEEIGVAVRTSELPSEKVIGREEVASLVRKIVAEE-D--EEGQKIRAKAEEVRVSS 445 (470)
T ss_pred HHHHHHHHHHhCeeEEecccccCCccCHHHHHHHHHHHHccC-c--ccHHHHHHHHHHHHHHH
Confidence 9999998 78899999852 2467889999999998410 0 01234455556666554
|
|
| >PLN02534 UDP-glycosyltransferase | Back alignment and domain information |
|---|
Probab=99.80 E-value=5.8e-17 Score=186.06 Aligned_cols=343 Identities=13% Similarity=0.097 Sum_probs=189.6
Q ss_pred EEEEEeecCCCcccHHHHHHHHHHHHHCCCeEEEEeCCCCc-ccccccC-----CCceeeeeeccC---CCcccc-ccc-
Q 003222 16 LVFAYYVTGHGFGHATRVVEVVRNLISAGHDVHVVTGAPDF-VFTSEIQ-----SPRLFIRKVLLD---CGAVQA-DAL- 84 (838)
Q Consensus 16 ~~Il~~v~g~G~GHv~r~laLA~~L~~~Gh~V~~v~~~~~~-~~~~~i~-----~~~~~~~~~~~~---~g~~~~-~~~- 84 (838)
.++++ ++.++.||++|++.||+.|+.+|+.|||++..... .....+. ...+.+...... .|+... ...
T Consensus 9 ~Hvv~-vPfpaqGHi~P~l~LAk~La~~G~~vT~v~t~~n~~~~~~~~~~~~~~~~~i~~~~lp~p~~~dglp~~~~~~~ 87 (491)
T PLN02534 9 LHFVL-IPLMAQGHMIPMIDMARLLAERGVIVSLVTTPQNASRFAKTIDRARESGLPIRLVQIPFPCKEVGLPIGCENLD 87 (491)
T ss_pred CEEEE-ECCCCcchHHHHHHHHHHHHhCCCeEEEEECCCcHHHHhhhhhhccccCCCeEEEEcCCCCccCCCCCCccccc
Confidence 34433 58899999999999999999999999999765311 1111110 011333332111 132210 000
Q ss_pred ccChHHHHHHHHHHhhccHHHHHHHHHHHHhc--CCCcEEEECC-CchHHHHHHHhCCcEEEEecCc---hhH---HHHh
Q 003222 85 TVDRLASLEKYSETAVAPRKSILKDEVEWLNS--IKADLVVSDV-VPVACRAAADAGIRSVCVTNFS---WDF---IYAE 155 (838)
Q Consensus 85 ~~~~~~~l~~~~~~~~~~~~~~l~~~~~~L~~--~kPDlVVsD~-~~~~~~aA~~lgIP~V~is~~~---~~~---i~~~ 155 (838)
.......+..+... ...+.....++|++ .+|++||+|+ .+|+..+|+.+|||.+.+...+ ... ++..
T Consensus 88 ~~~~~~~~~~~~~~----~~~l~~~l~~lL~~~~~pp~cIV~D~f~~Wa~dVA~~lgIP~v~F~t~~a~~~~~~~~~~~~ 163 (491)
T PLN02534 88 TLPSRDLLRKFYDA----VDKLQQPLERFLEQAKPPPSCIISDKCLSWTSKTAQRFNIPRIVFHGMCCFSLLSSHNIRLH 163 (491)
T ss_pred cCCcHHHHHHHHHH----HHHhHHHHHHHHHhcCCCCcEEEECCccHHHHHHHHHhCCCeEEEecchHHHHHHHHHHHHh
Confidence 00111122222111 11223344556654 3679999996 8899999999999998874221 100 0000
Q ss_pred --h-----------hhhccc----c-------------hHHHHHHHHhhccccceEEecCCCCC-------C-CCC-Cce
Q 003222 156 --Y-----------VMAAGH----H-------------HRSIVWQIAEDYSHCEFLIRLPGYCP-------M-PAF-RDV 196 (838)
Q Consensus 156 --~-----------~~~~~~----~-------------~~~i~~~l~~~y~~~d~ll~~~~~~~-------~-p~~-~~v 196 (838)
. ++..+. . .+.+..++......++.++.-++... + ..+ +++
T Consensus 164 ~~~~~~~~~~~~~~iPg~p~~~~l~~~dlp~~~~~~~~~~~~~~~~~~~~~~a~~vlvNTf~eLE~~~l~~l~~~~~~~v 243 (491)
T PLN02534 164 NAHLSVSSDSEPFVVPGMPQSIEITRAQLPGAFVSLPDLDDVRNKMREAESTAFGVVVNSFNELEHGCAEAYEKAIKKKV 243 (491)
T ss_pred cccccCCCCCceeecCCCCccccccHHHCChhhcCcccHHHHHHHHHhhcccCCEEEEecHHHhhHHHHHHHHhhcCCcE
Confidence 0 011000 0 00111111111111222222122110 0 111 357
Q ss_pred eecCcccccCC-------------cChHHHHHHhCCCCCCcEEEEEcCCCCc--hhh---hHHhhCCCCcEEEE-eCCC-
Q 003222 197 IDVPLVVRRLH-------------KSRKEVRKELGIEDDVKLLILNFGGQPA--GWK---LKEEYLPSGWKCLV-CGAS- 256 (838)
Q Consensus 197 ~~ip~~~~~~~-------------~~~~~~r~~l~~~~~~~~Vlvs~Gs~~~--~~~---ll~~l~~~~~~~vv-~G~~- 256 (838)
..|||+..... ....++.+||+..+++++|||||||... +.+ +...|...+..|++ +...
T Consensus 244 ~~VGPL~~~~~~~~~~~~~~~~~~~~~~~cl~wLd~~~~~sVvyvsfGS~~~~~~~q~~e~a~gl~~~~~~flW~~r~~~ 323 (491)
T PLN02534 244 WCVGPVSLCNKRNLDKFERGNKASIDETQCLEWLDSMKPRSVIYACLGSLCRLVPSQLIELGLGLEASKKPFIWVIKTGE 323 (491)
T ss_pred EEECcccccccccccccccCCccccchHHHHHHHhcCCCCceEEEEecccccCCHHHHHHHHHHHHhCCCCEEEEEecCc
Confidence 78888743100 0223577899887778999999999864 223 33334333333332 2211
Q ss_pred C-----C-CC---------CCCeEECCCCCCHH--HHHhhcCE--EEecCChhhHHHHHHcCCcEEEEeCCCCCChHHHH
Q 003222 257 D-----S-QL---------PPNFIKLPKDAYTP--DFMAASDC--MLGKIGYGTVSEALAYKLPFVFVRRDYFNEEPFLR 317 (838)
Q Consensus 257 ~-----~-~l---------p~nv~~~~~~~~~p--dlLa~adl--~It~gG~~Tv~Eal~~GvP~l~iP~~~~~EQ~~Na 317 (838)
. . .+ +.|+.+ ..|+| ++|+|.++ ||||||+||++||+++|||||++| .+.||+.|+
T Consensus 324 ~~~~~~~~~~p~gf~~~~~~~g~~v---~~w~pq~~iL~h~~v~~fvtH~G~ns~~ea~~~GvP~v~~P--~~~dq~~na 398 (491)
T PLN02534 324 KHSELEEWLVKENFEERIKGRGLLI---KGWAPQVLILSHPAIGGFLTHCGWNSTIEGICSGVPMITWP--LFAEQFLNE 398 (491)
T ss_pred cccchhhhcCchhhHHhhccCCeec---cCCCCHHHHhcCCccceEEecCccHHHHHHHHcCCCEEecc--ccccHHHHH
Confidence 0 0 02 334444 25777 79988555 999999999999999999999999 789999999
Q ss_pred HHHH-HcCcEEEEec---------C----CCChhhHHHHHHHHhhCCCCccCCCCHHHHHHHHHHHHh
Q 003222 318 NMLE-FYQGGVEMIR---------R----DLLTGHWKPYLERAISLKPCYEGGINGGEVAAHILQETA 371 (838)
Q Consensus 318 ~~l~-~~G~g~~l~~---------~----~~~~~~l~~~l~~ll~~~~~~~~~~~g~~~~a~~i~~~~ 371 (838)
++++ ..|+|+.+.. + -++.+.+.++|++++... .......++-|..|.+.+
T Consensus 399 ~~~~e~~~vGv~~~~~~~~~~~~~~~~~~~v~~eev~~~v~~~m~~~---~eeg~~~R~rA~elk~~a 463 (491)
T PLN02534 399 KLIVEVLRIGVRVGVEVPVRWGDEERVGVLVKKDEVEKAVKTLMDDG---GEEGERRRRRAQELGVMA 463 (491)
T ss_pred HHHHHhhcceEEecccccccccccccccCccCHHHHHHHHHHHhccc---cccHHHHHHHHHHHHHHH
Confidence 8885 7789887741 1 257788999999988520 002234455566666654
|
|
| >cd03785 GT1_MurG MurG is an N-acetylglucosaminyltransferase, the last enzyme involved in the intracellular phase of peptidoglycan biosynthesis | Back alignment and domain information |
|---|
Probab=99.80 E-value=2e-17 Score=184.02 Aligned_cols=301 Identities=18% Similarity=0.093 Sum_probs=176.7
Q ss_pred EEEeecCCCcccHHHHHHHHHHHHHCCCeEEEEeCCCCcccccccCCCceeeeeeccCCCcccccccccChHHHHHHHHH
Q 003222 18 FAYYVTGHGFGHATRVVEVVRNLISAGHDVHVVTGAPDFVFTSEIQSPRLFIRKVLLDCGAVQADALTVDRLASLEKYSE 97 (838)
Q Consensus 18 Il~~v~g~G~GHv~r~laLA~~L~~~Gh~V~~v~~~~~~~~~~~i~~~~~~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~ 97 (838)
|++.. |...||..++..+|++|.++||+|++++...... .......++.+..... .+.. .... ...+..
T Consensus 2 ~~~~~-~~~gG~~~~~~~la~~l~~~G~ev~v~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~-----~~~~---~~~~~~ 70 (350)
T cd03785 2 ILIAG-GGTGGHIFPALALAEELRERGAEVLFLGTKRGLE-ARLVPKAGIPLHTIPV-GGLR-----RKGS---LKKLKA 70 (350)
T ss_pred EEEEe-cCchhhhhHHHHHHHHHHhCCCEEEEEECCCcch-hhcccccCCceEEEEe-cCcC-----CCCh---HHHHHH
Confidence 44444 4445999999999999999999999997753211 1111111122222100 0000 0000 111111
Q ss_pred HhhccHHHHHHHHHHHHhcCCCcEEEECCC---chHHHHHHHhCCcEEEEecCchhHHHHhhhhhcccchHHHHHHHHhh
Q 003222 98 TAVAPRKSILKDEVEWLNSIKADLVVSDVV---PVACRAAADAGIRSVCVTNFSWDFIYAEYVMAAGHHHRSIVWQIAED 174 (838)
Q Consensus 98 ~~~~~~~~~l~~~~~~L~~~kPDlVVsD~~---~~~~~aA~~lgIP~V~is~~~~~~i~~~~~~~~~~~~~~i~~~l~~~ 174 (838)
++ .....+....+++++.+||+|+++.. +.+..+++..++|.+......|.... ..+ .
T Consensus 71 ~~--~~~~~~~~~~~~i~~~~pDvI~~~~~~~~~~~~~~a~~~~~p~v~~~~~~~~~~~---------------~~~--~ 131 (350)
T cd03785 71 PF--KLLKGVLQARKILKKFKPDVVVGFGGYVSGPVGLAAKLLGIPLVIHEQNAVPGLA---------------NRL--L 131 (350)
T ss_pred HH--HHHHHHHHHHHHHHhcCCCEEEECCCCcchHHHHHHHHhCCCEEEEcCCCCccHH---------------HHH--H
Confidence 11 01112334567789999999998752 23456778889999865332221000 000 1
Q ss_pred ccccceEEecCCCCC--C-CCCCceeecCcccccCCcChHHHHHHhCCCCCCcEEEEEcCCCCch--hhhH-H---hhCC
Q 003222 175 YSHCEFLIRLPGYCP--M-PAFRDVIDVPLVVRRLHKSRKEVRKELGIEDDVKLLILNFGGQPAG--WKLK-E---EYLP 245 (838)
Q Consensus 175 y~~~d~ll~~~~~~~--~-p~~~~v~~ip~~~~~~~~~~~~~r~~l~~~~~~~~Vlvs~Gs~~~~--~~ll-~---~l~~ 245 (838)
+..++.++....... . +....+++.|........ ...++.++.++++++|++.+|+.+.. .+++ . .+..
T Consensus 132 ~~~~~~vi~~s~~~~~~~~~~~~~~i~n~v~~~~~~~--~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~l~~a~~~l~~ 209 (350)
T cd03785 132 ARFADRVALSFPETAKYFPKDKAVVTGNPVREEILAL--DRERARLGLRPGKPTLLVFGGSQGARAINEAVPEALAELLR 209 (350)
T ss_pred HHhhCEEEEcchhhhhcCCCCcEEEECCCCchHHhhh--hhhHHhcCCCCCCeEEEEECCcHhHHHHHHHHHHHHHHhhc
Confidence 111233332111100 0 111122333332211111 11156677776677777777766542 2232 2 2322
Q ss_pred CCcE-EEEeCCCCCC--------CCCCeEECCCCCCHHHHHhhcCEEEecCChhhHHHHHHcCCcEEEEeCCC--CCChH
Q 003222 246 SGWK-CLVCGASDSQ--------LPPNFIKLPKDAYTPDFMAASDCMLGKIGYGTVSEALAYKLPFVFVRRDY--FNEEP 314 (838)
Q Consensus 246 ~~~~-~vv~G~~~~~--------lp~nv~~~~~~~~~pdlLa~adl~It~gG~~Tv~Eal~~GvP~l~iP~~~--~~EQ~ 314 (838)
.++. ++++|....+ +..||++.++.++++++|+.||++|+++|.+|++||+++|+|+|++|.+. ..+|.
T Consensus 210 ~~~~~~~i~G~g~~~~l~~~~~~~~~~v~~~g~~~~~~~~l~~ad~~v~~sg~~t~~Eam~~G~Pvv~~~~~~~~~~~~~ 289 (350)
T cd03785 210 KRLQVIHQTGKGDLEEVKKAYEELGVNYEVFPFIDDMAAAYAAADLVISRAGASTVAELAALGLPAILIPLPYAADDHQT 289 (350)
T ss_pred cCeEEEEEcCCccHHHHHHHHhccCCCeEEeehhhhHHHHHHhcCEEEECCCHhHHHHHHHhCCCEEEeecCCCCCCcHH
Confidence 3444 3456765321 24689999998888999999999999999999999999999999998653 46788
Q ss_pred HHHHHHHHcCcEEEEecCCCChhhHHHHHHHHhhCC
Q 003222 315 FLRNMLEFYQGGVEMIRRDLLTGHWKPYLERAISLK 350 (838)
Q Consensus 315 ~Na~~l~~~G~g~~l~~~~~~~~~l~~~l~~ll~~~ 350 (838)
.|++.+.+.|.|+.++..+.+++.+.++|.++++++
T Consensus 290 ~~~~~l~~~g~g~~v~~~~~~~~~l~~~i~~ll~~~ 325 (350)
T cd03785 290 ANARALVKAGAAVLIPQEELTPERLAAALLELLSDP 325 (350)
T ss_pred HhHHHHHhCCCEEEEecCCCCHHHHHHHHHHHhcCH
Confidence 999999999999999876556789999999998754
|
It transfers N-acetyl-D-glucosamine (GlcNAc) from UDP-GlcNAc to the C4 hydroxyl of a lipid-linked N-acetylmuramoyl pentapeptide (NAM). The resulting disaccharide is then transported across the cell membrane, where it is polymerized into NAG-NAM cell-wall repeat structure. MurG belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains, each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility. |
| >KOG1192 consensus UDP-glucuronosyl and UDP-glucosyl transferase [Carbohydrate transport and metabolism; Energy production and conversion] | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.2e-17 Score=195.26 Aligned_cols=184 Identities=18% Similarity=0.210 Sum_probs=129.2
Q ss_pred CCCCceeecCcccccCCc----ChHHHHHHhCCCCCCcEEEEEcCCCCc----hhh----hHHhhCCC-CcEEEEe-CCC
Q 003222 191 PAFRDVIDVPLVVRRLHK----SRKEVRKELGIEDDVKLLILNFGGQPA----GWK----LKEEYLPS-GWKCLVC-GAS 256 (838)
Q Consensus 191 p~~~~v~~ip~~~~~~~~----~~~~~r~~l~~~~~~~~Vlvs~Gs~~~----~~~----ll~~l~~~-~~~~vv~-G~~ 256 (838)
|..+++..+|++...... .+.++.+.+... ..++|||||||+.. +.+ +...+... +..|++. -..
T Consensus 242 ~~~~~v~~IG~l~~~~~~~~~~~~~~wl~~~~~~-~~~vvyvSfGS~~~~~~lp~~~~~~l~~~l~~~~~~~FiW~~~~~ 320 (496)
T KOG1192|consen 242 PLLPKVIPIGPLHVKDSKQKSPLPLEWLDILDES-RHSVVYISFGSMVNSADLPEEQKKELAKALESLQGVTFLWKYRPD 320 (496)
T ss_pred CCCCCceEECcEEecCccccccccHHHHHHHhhc-cCCeEEEECCcccccccCCHHHHHHHHHHHHhCCCceEEEEecCC
Confidence 335678889887653221 456777666532 45899999999973 222 33334333 6644443 221
Q ss_pred -C----CCC----CCCeEECCCCCCHH--HHH-hh--cCEEEecCChhhHHHHHHcCCcEEEEeCCCCCChHHHHHHHHH
Q 003222 257 -D----SQL----PPNFIKLPKDAYTP--DFM-AA--SDCMLGKIGYGTVSEALAYKLPFVFVRRDYFNEEPFLRNMLEF 322 (838)
Q Consensus 257 -~----~~l----p~nv~~~~~~~~~p--dlL-a~--adl~It~gG~~Tv~Eal~~GvP~l~iP~~~~~EQ~~Na~~l~~ 322 (838)
. ..+ +.||... +|+| ++| +| +++||||||+||++|++++|||||++| .|+||+.||+++++
T Consensus 321 ~~~~~~~~~~~~~~~nV~~~---~W~PQ~~lll~H~~v~~FvTHgG~nSt~E~~~~GvP~v~~P--lf~DQ~~Na~~i~~ 395 (496)
T KOG1192|consen 321 DSIYFPEGLPNRGRGNVVLS---KWAPQNDLLLDHPAVGGFVTHGGWNSTLESIYSGVPMVCVP--LFGDQPLNARLLVR 395 (496)
T ss_pred cchhhhhcCCCCCcCceEEe---cCCCcHHHhcCCCcCcEEEECCcccHHHHHHhcCCceecCC--ccccchhHHHHHHh
Confidence 1 123 3467763 5888 554 33 889999999999999999999999999 89999999999999
Q ss_pred cCcEEEEecCCCChhhHHHHHHHHhhCCCC----------ccCCCCHHHHHHHHHHHHhccCCCccCCCchhHhhH
Q 003222 323 YQGGVEMIRRDLLTGHWKPYLERAISLKPC----------YEGGINGGEVAAHILQETAIGKNYASDKLSGARRLR 388 (838)
Q Consensus 323 ~G~g~~l~~~~~~~~~l~~~l~~ll~~~~~----------~~~~~~g~~~~a~~i~~~~~~~~~~~~r~~ga~~Lr 388 (838)
.|.+.++...+++...+..++.+++++++. +.+++..+ +.+.+|.++ +.++.++.+|+
T Consensus 396 ~g~~~v~~~~~~~~~~~~~~~~~il~~~~y~~~~~~l~~~~~~~p~~~-~~~~~~~e~-------~~~~~~~~~l~ 463 (496)
T KOG1192|consen 396 HGGGGVLDKRDLVSEELLEAIKEILENEEYKEAAKRLSEILRDQPISP-ELAVKWVEF-------VARHGGAKHLK 463 (496)
T ss_pred CCCEEEEehhhcCcHHHHHHHHHHHcChHHHHHHHHHHHHHHcCCCCH-HHHHHHHHH-------HHhcCCCcccC
Confidence 999999998888766688888888876532 11455666 666777666 56677778876
|
|
| >PLN02605 monogalactosyldiacylglycerol synthase | Back alignment and domain information |
|---|
Probab=99.79 E-value=8.4e-18 Score=189.82 Aligned_cols=241 Identities=19% Similarity=0.152 Sum_probs=154.7
Q ss_pred HHHHHHHhcCCCcEEEECCCc----hHHHHHHH-----hCCcEEEE-ecCc-----hhHH-HHhhhhhcccchHHHHHHH
Q 003222 108 KDEVEWLNSIKADLVVSDVVP----VACRAAAD-----AGIRSVCV-TNFS-----WDFI-YAEYVMAAGHHHRSIVWQI 171 (838)
Q Consensus 108 ~~~~~~L~~~kPDlVVsD~~~----~~~~aA~~-----lgIP~V~i-s~~~-----~~~i-~~~~~~~~~~~~~~i~~~l 171 (838)
....+++++++||+|++++++ .+..++.. .++|.+++ +++. |... ...++.. .+.+.+.+
T Consensus 90 ~~l~~~i~~~~pDvIi~thp~~~~~~~~~l~~~~~~~~~~~p~~~~~tD~~~~~~~w~~~~~d~~~~~----s~~~~~~l 165 (382)
T PLN02605 90 REVAKGLMKYKPDIIVSVHPLMQHVPLRVLRWQGKELGKKIPFTTVVTDLGTCHPTWFHKGVTRCFCP----SEEVAKRA 165 (382)
T ss_pred HHHHHHHHhcCcCEEEEeCcCcccCHHHHHHHHhhccCCCCCEEEEECCCCCcCcccccCCCCEEEEC----CHHHHHHH
Confidence 345678999999999998754 22333332 37998754 6652 3210 0111110 12222333
Q ss_pred HhhccccceEEecCCCCCCCCCCceeecCcccc--cCCcChHHHHHHhCCCCCCcEEEEEcCCCCch--hhhHHhh---C
Q 003222 172 AEDYSHCEFLIRLPGYCPMPAFRDVIDVPLVVR--RLHKSRKEVRKELGIEDDVKLLILNFGGQPAG--WKLKEEY---L 244 (838)
Q Consensus 172 ~~~y~~~d~ll~~~~~~~~p~~~~v~~ip~~~~--~~~~~~~~~r~~l~~~~~~~~Vlvs~Gs~~~~--~~ll~~l---~ 244 (838)
.+.+...++ ..++++|+... .+...++++++.+++++++++|++.+|+.+.+ ..+++.+ +
T Consensus 166 ~~~g~~~~k-------------i~v~g~~v~~~f~~~~~~~~~~r~~~gl~~~~~~il~~Gg~~g~~~~~~li~~l~~~~ 232 (382)
T PLN02605 166 LKRGLEPSQ-------------IRVYGLPIRPSFARAVRPKDELRRELGMDEDLPAVLLMGGGEGMGPLEETARALGDSL 232 (382)
T ss_pred HHcCCCHHH-------------EEEECcccCHhhccCCCCHHHHHHHcCCCCCCcEEEEECCCcccccHHHHHHHHHHhh
Confidence 222211111 12333443221 12234567899999988888898888877753 2333322 2
Q ss_pred ------CCCc-EEEEeCCCCC---C-----CCCCeEECCCCCCHHHHHhhcCEEEecCChhhHHHHHHcCCcEEEEeCCC
Q 003222 245 ------PSGW-KCLVCGASDS---Q-----LPPNFIKLPKDAYTPDFMAASDCMLGKIGYGTVSEALAYKLPFVFVRRDY 309 (838)
Q Consensus 245 ------~~~~-~~vv~G~~~~---~-----lp~nv~~~~~~~~~pdlLa~adl~It~gG~~Tv~Eal~~GvP~l~iP~~~ 309 (838)
.++. .++++|.+.. . ...+|++++|++++|++|++||++|+++|.+|++||+++|+|+|+.+...
T Consensus 233 ~~~~~~~~~~~~~vi~G~~~~~~~~L~~~~~~~~v~~~G~~~~~~~l~~aaDv~V~~~g~~ti~EAma~g~PvI~~~~~p 312 (382)
T PLN02605 233 YDKNLGKPIGQVVVICGRNKKLQSKLESRDWKIPVKVRGFVTNMEEWMGACDCIITKAGPGTIAEALIRGLPIILNGYIP 312 (382)
T ss_pred ccccccCCCceEEEEECCCHHHHHHHHhhcccCCeEEEeccccHHHHHHhCCEEEECCCcchHHHHHHcCCCEEEecCCC
Confidence 2334 4677887632 1 23478899999999999999999999999999999999999999998544
Q ss_pred CCChHHHHHHHHHcCcEEEEecCCCChhhHHHHHHHHhhC-CCCcc---------CCCCHHHHHHHHHHHH
Q 003222 310 FNEEPFLRNMLEFYQGGVEMIRRDLLTGHWKPYLERAISL-KPCYE---------GGINGGEVAAHILQET 370 (838)
Q Consensus 310 ~~EQ~~Na~~l~~~G~g~~l~~~~~~~~~l~~~l~~ll~~-~~~~~---------~~~~g~~~~a~~i~~~ 370 (838)
.+|. .|++.+.+.|.|+.. . +++.+.++|.+++.+ +.... ..+++++++++.+.+.
T Consensus 313 gqe~-gn~~~i~~~g~g~~~--~--~~~~la~~i~~ll~~~~~~~~~m~~~~~~~~~~~a~~~i~~~l~~~ 378 (382)
T PLN02605 313 GQEE-GNVPYVVDNGFGAFS--E--SPKEIARIVAEWFGDKSDELEAMSENALKLARPEAVFDIVHDLHEL 378 (382)
T ss_pred ccch-hhHHHHHhCCceeec--C--CHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCchHHHHHHHHHHH
Confidence 3333 799999999999865 2 357888999999876 32211 4677777777777765
|
|
| >TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.8e-17 Score=178.57 Aligned_cols=249 Identities=17% Similarity=0.194 Sum_probs=142.3
Q ss_pred cCCCcccHHHHHHHHHHHHHCCCeEEEEeCCCCcccccccCCCceeeeeeccCCCcccccccccChHHHHHHHHHHhhcc
Q 003222 23 TGHGFGHATRVVEVVRNLISAGHDVHVVTGAPDFVFTSEIQSPRLFIRKVLLDCGAVQADALTVDRLASLEKYSETAVAP 102 (838)
Q Consensus 23 ~g~G~GHv~r~laLA~~L~~~Gh~V~~v~~~~~~~~~~~i~~~~~~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~~~ 102 (838)
...|.||++||++||++|+++||+|+|++..........+...++.+... . +. .+
T Consensus 10 ~~iG~GHv~Rcl~LA~~l~~~g~~v~f~~~~~~~~~~~~i~~~g~~v~~~-------~-~~--~~--------------- 64 (279)
T TIGR03590 10 SEIGLGHVMRCLTLARALHAQGAEVAFACKPLPGDLIDLLLSAGFPVYEL-------P-DE--SS--------------- 64 (279)
T ss_pred ccccccHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHcCCeEEEe-------c-CC--Cc---------------
Confidence 56789999999999999999999999998864332222222122222111 0 00 00
Q ss_pred HHHHHHHHHHHHhcCCCcEEEECCCchHHHH---HHHhCCcEEEEecCchhHHHHhhhhhcccchHHHHHHHHhhccccc
Q 003222 103 RKSILKDEVEWLNSIKADLVVSDVVPVACRA---AADAGIRSVCVTNFSWDFIYAEYVMAAGHHHRSIVWQIAEDYSHCE 179 (838)
Q Consensus 103 ~~~~l~~~~~~L~~~kPDlVVsD~~~~~~~a---A~~lgIP~V~is~~~~~~i~~~~~~~~~~~~~~i~~~l~~~y~~~d 179 (838)
+..-..+..++|++.+||+||.|++-....+ .+..+.+.+.++++.-...+.+++-..... .+. ..|..
T Consensus 65 ~~~d~~~~~~~l~~~~~d~vV~D~y~~~~~~~~~~k~~~~~l~~iDD~~~~~~~~D~vin~~~~----~~~--~~y~~-- 136 (279)
T TIGR03590 65 RYDDALELINLLEEEKFDILIVDHYGLDADWEKLIKEFGRKILVIDDLADRPHDCDLLLDQNLG----ADA--SDYQG-- 136 (279)
T ss_pred hhhhHHHHHHHHHhcCCCEEEEcCCCCCHHHHHHHHHhCCeEEEEecCCCCCcCCCEEEeCCCC----cCH--hHhcc--
Confidence 0001223466788899999999985332222 223466778888865111111111000000 000 01110
Q ss_pred eEEecCCCCCCCCCCceeecCcccccCCcChHHHHHHh---CCCCCCcEEEEEcCCCCch---hhhHHhhCC--CCc-EE
Q 003222 180 FLIRLPGYCPMPAFRDVIDVPLVVRRLHKSRKEVRKEL---GIEDDVKLLILNFGGQPAG---WKLKEEYLP--SGW-KC 250 (838)
Q Consensus 180 ~ll~~~~~~~~p~~~~v~~ip~~~~~~~~~~~~~r~~l---~~~~~~~~Vlvs~Gs~~~~---~~ll~~l~~--~~~-~~ 250 (838)
..|. ......|+... +.+++..+.. ....+.+.|++++||.+.. ..+++.+.. .++ ..
T Consensus 137 ---------~~~~-~~~~l~G~~Y~---~lr~eF~~~~~~~~~~~~~~~iLi~~GG~d~~~~~~~~l~~l~~~~~~~~i~ 203 (279)
T TIGR03590 137 ---------LVPA-NCRLLLGPSYA---LLREEFYQLATANKRRKPLRRVLVSFGGADPDNLTLKLLSALAESQINISIT 203 (279)
T ss_pred ---------cCcC-CCeEEecchHH---hhhHHHHHhhHhhhcccccCeEEEEeCCcCCcCHHHHHHHHHhccccCceEE
Confidence 0010 01111222100 1111221110 0001346789999988763 345555432 344 34
Q ss_pred EEeCCCCCC---------CCCCeEECCCCCCHHHHHhhcCEEEecCChhhHHHHHHcCCcEEEEeCCCCCChHHHHHHH
Q 003222 251 LVCGASDSQ---------LPPNFIKLPKDAYTPDFMAASDCMLGKIGYGTVSEALAYKLPFVFVRRDYFNEEPFLRNML 320 (838)
Q Consensus 251 vv~G~~~~~---------lp~nv~~~~~~~~~pdlLa~adl~It~gG~~Tv~Eal~~GvP~l~iP~~~~~EQ~~Na~~l 320 (838)
+++|+..+. ..+|+++.+|+++|+++|+.||++||++| +|++|++++|+|+|++|. ..+|..||+.+
T Consensus 204 vv~G~~~~~~~~l~~~~~~~~~i~~~~~~~~m~~lm~~aDl~Is~~G-~T~~E~~a~g~P~i~i~~--~~nQ~~~a~~~ 279 (279)
T TIGR03590 204 LVTGSSNPNLDELKKFAKEYPNIILFIDVENMAELMNEADLAIGAAG-STSWERCCLGLPSLAICL--AENQQSNSQQL 279 (279)
T ss_pred EEECCCCcCHHHHHHHHHhCCCEEEEeCHHHHHHHHHHCCEEEECCc-hHHHHHHHcCCCEEEEEe--cccHHHHhhhC
Confidence 577876542 24689999999999999999999999999 999999999999999995 45788898763
|
This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases. |
| >PRK13608 diacylglycerol glucosyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=3.8e-17 Score=185.04 Aligned_cols=321 Identities=16% Similarity=0.103 Sum_probs=187.4
Q ss_pred EEEEEeecCCCcccHHHHHHHHHHHHHCCC---eEEEEeC---CCCcccccccC---CCceeeeeeccCCCccccccccc
Q 003222 16 LVFAYYVTGHGFGHATRVVEVVRNLISAGH---DVHVVTG---APDFVFTSEIQ---SPRLFIRKVLLDCGAVQADALTV 86 (838)
Q Consensus 16 ~~Il~~v~g~G~GHv~r~laLA~~L~~~Gh---~V~~v~~---~~~~~~~~~i~---~~~~~~~~~~~~~g~~~~~~~~~ 86 (838)
++||+++.+.|.||...+.+|+++|.++|. +|.++-. ..+.+ ...+. ...+...+..|.. ++.. .
T Consensus 6 ~~vlil~~~~G~GH~~aA~al~~~~~~~~~~~~~~~~~D~~~~~~~~~-~~~~~~~Y~~~~~~~p~~y~~-~y~~----~ 79 (391)
T PRK13608 6 KKILIITGSFGNGHMQVTQSIVNQLNDMNLDHLSVIEHDLFMEAHPIL-TSICKKWYINSFKYFRNMYKG-FYYS----R 79 (391)
T ss_pred ceEEEEECCCCchHHHHHHHHHHHHHhhCCCCceEEEeehHHhcCchH-HHHHHHHHHHHHHHhHHHHHH-HHHc----C
Confidence 356667889999999999999999998864 4554411 11111 00000 0000000000000 0000 0
Q ss_pred ChHHHHHHHHHHhhccHHHHHHHHHHHHhcCCCcEEEECCCchHHHHH---HHhCCcEEEE-ecCc----hhHHH-Hhhh
Q 003222 87 DRLASLEKYSETAVAPRKSILKDEVEWLNSIKADLVVSDVVPVACRAA---ADAGIRSVCV-TNFS----WDFIY-AEYV 157 (838)
Q Consensus 87 ~~~~~l~~~~~~~~~~~~~~l~~~~~~L~~~kPDlVVsD~~~~~~~aA---~~lgIP~V~i-s~~~----~~~i~-~~~~ 157 (838)
+ ..+ ...+ ..........++|++++||+||++++....... ...++|++.+ +++. |...+ ..++
T Consensus 80 ~--~~~---~~~~--~~~~~~~~l~~~l~~~kPDvVi~~~p~~~~~~l~~~~~~~iP~~~v~td~~~~~~w~~~~~d~~~ 152 (391)
T PRK13608 80 P--DKL---DKCF--YKYYGLNKLINLLIKEKPDLILLTFPTPVMSVLTEQFNINIPVATVMTDYRLHKNWITPYSTRYY 152 (391)
T ss_pred c--hhh---HHHH--HHHHHHHHHHHHHHHhCcCEEEECCcHHHHHHHHHhcCCCCCEEEEeCCCCcccccccCCCCEEE
Confidence 0 000 0000 000122455788999999999998765432222 2358998765 5543 32100 1111
Q ss_pred hhcccchHHHHHHHHhhccccceEEecCCCCCCCCCCceeecCccccc-CCcChHHHHHHhCCCCCCcEEEEEcCCCCch
Q 003222 158 MAAGHHHRSIVWQIAEDYSHCEFLIRLPGYCPMPAFRDVIDVPLVVRR-LHKSRKEVRKELGIEDDVKLLILNFGGQPAG 236 (838)
Q Consensus 158 ~~~~~~~~~i~~~l~~~y~~~d~ll~~~~~~~~p~~~~v~~ip~~~~~-~~~~~~~~r~~l~~~~~~~~Vlvs~Gs~~~~ 236 (838)
.. .+.+.+.+.+.....++ ..++++|+.... ....+.++++.+++++++++|+++.|+.+..
T Consensus 153 v~----s~~~~~~l~~~gi~~~k-------------i~v~GiPv~~~f~~~~~~~~~~~~~~l~~~~~~ilv~~G~lg~~ 215 (391)
T PRK13608 153 VA----TKETKQDFIDVGIDPST-------------VKVTGIPIDNKFETPIDQKQWLIDNNLDPDKQTILMSAGAFGVS 215 (391)
T ss_pred EC----CHHHHHHHHHcCCCHHH-------------EEEECeecChHhcccccHHHHHHHcCCCCCCCEEEEECCCcccc
Confidence 11 12222222221111111 123344432221 1223456778889887888999999988742
Q ss_pred ---hhhHHhhCC--CCcEE-EEeCCCCC---C------CCCCeEECCCCCCHHHHHhhcCEEEecCChhhHHHHHHcCCc
Q 003222 237 ---WKLKEEYLP--SGWKC-LVCGASDS---Q------LPPNFIKLPKDAYTPDFMAASDCMLGKIGYGTVSEALAYKLP 301 (838)
Q Consensus 237 ---~~ll~~l~~--~~~~~-vv~G~~~~---~------lp~nv~~~~~~~~~pdlLa~adl~It~gG~~Tv~Eal~~GvP 301 (838)
..+++.+.. +++.+ +++|.+.. . ..+||++++|+++++++|+.||++|+++|..|++||+++|+|
T Consensus 216 k~~~~li~~~~~~~~~~~~vvv~G~~~~l~~~l~~~~~~~~~v~~~G~~~~~~~~~~~aDl~I~k~gg~tl~EA~a~G~P 295 (391)
T PRK13608 216 KGFDTMITDILAKSANAQVVMICGKSKELKRSLTAKFKSNENVLILGYTKHMNEWMASSQLMITKPGGITISEGLARCIP 295 (391)
T ss_pred hhHHHHHHHHHhcCCCceEEEEcCCCHHHHHHHHHHhccCCCeEEEeccchHHHHHHhhhEEEeCCchHHHHHHHHhCCC
Confidence 234444322 45555 45676531 1 245899999999999999999999999998999999999999
Q ss_pred EEEEeCCCCCChHHHHHHHHHcCcEEEEecCCCChhhHHHHHHHHhhCCCCcc---------CCCCHHHHHHHHHHHHh
Q 003222 302 FVFVRRDYFNEEPFLRNMLEFYQGGVEMIRRDLLTGHWKPYLERAISLKPCYE---------GGINGGEVAAHILQETA 371 (838)
Q Consensus 302 ~l~iP~~~~~EQ~~Na~~l~~~G~g~~l~~~~~~~~~l~~~l~~ll~~~~~~~---------~~~~g~~~~a~~i~~~~ 371 (838)
+|++... .++|..|+..+++.|+|+... +.+.+.++|.++++++.... ..+.+.+++++.|.+.+
T Consensus 296 vI~~~~~-pgqe~~N~~~~~~~G~g~~~~----~~~~l~~~i~~ll~~~~~~~~m~~~~~~~~~~~s~~~i~~~l~~l~ 369 (391)
T PRK13608 296 MIFLNPA-PGQELENALYFEEKGFGKIAD----TPEEAIKIVASLTNGNEQLTNMISTMEQDKIKYATQTICRDLLDLI 369 (391)
T ss_pred EEECCCC-CCcchhHHHHHHhCCcEEEeC----CHHHHHHHHHHHhcCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHh
Confidence 9998422 234558999999999998754 34677888999887653321 45677888888888775
|
|
| >PRK13609 diacylglycerol glucosyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=3.1e-17 Score=185.06 Aligned_cols=325 Identities=14% Similarity=0.086 Sum_probs=186.4
Q ss_pred EEEEEeecCCCcccHHHHHHHHHHHHHCCCeEEEEeCCCCccc---ccccC---CCceeeeeeccCCCcccccccccChH
Q 003222 16 LVFAYYVTGHGFGHATRVVEVVRNLISAGHDVHVVTGAPDFVF---TSEIQ---SPRLFIRKVLLDCGAVQADALTVDRL 89 (838)
Q Consensus 16 ~~Il~~v~g~G~GHv~r~laLA~~L~~~Gh~V~~v~~~~~~~~---~~~i~---~~~~~~~~~~~~~g~~~~~~~~~~~~ 89 (838)
++|+++..+.|.||..++.+|+++|.++||+|+++...-.... ..... ...+.+.+..+...+...... .. .
T Consensus 5 ~rili~t~~~G~GH~~~a~al~~~l~~~g~~~~~~~d~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~-~~-~ 82 (380)
T PRK13609 5 PKVLILTAHYGNGHVQVAKTLEQTFRQKGIKDVIVCDLFGESHPVITEITKYLYLKSYTIGKELYRLFYYGVEKI-YD-K 82 (380)
T ss_pred CeEEEEEcCCCchHHHHHHHHHHHHHhcCCCcEEEEEhHHhcchHHHHHHHHHHHHHHHHhHHHHHHHHhccCcc-cc-h
Confidence 4677788999999999999999999999998766644211000 00000 000000000000000000000 00 0
Q ss_pred HHHHHHHHHhhccHHHHHHHHHHHHhcCCCcEEEECCCchHHHHH---HHhCCcEEEE-ecCchh--HHHH---hhhhhc
Q 003222 90 ASLEKYSETAVAPRKSILKDEVEWLNSIKADLVVSDVVPVACRAA---ADAGIRSVCV-TNFSWD--FIYA---EYVMAA 160 (838)
Q Consensus 90 ~~l~~~~~~~~~~~~~~l~~~~~~L~~~kPDlVVsD~~~~~~~aA---~~lgIP~V~i-s~~~~~--~i~~---~~~~~~ 160 (838)
... . ++ .........+++++++||+||+++++.+...+ ...++|.+.+ +++... ..+. .++.
T Consensus 83 ~~~-~---~~---~~~~~~~l~~~l~~~~pD~Vi~~~~~~~~~~~~~~~~~~ip~~~~~td~~~~~~~~~~~ad~i~~-- 153 (380)
T PRK13609 83 KIF-S---WY---ANFGRKRLKLLLQAEKPDIVINTFPIIAVPELKKQTGISIPTYNVLTDFCLHKIWVHREVDRYFV-- 153 (380)
T ss_pred HHH-H---HH---HHHHHHHHHHHHHHhCcCEEEEcChHHHHHHHHHhcCCCCCeEEEeCCCCCCcccccCCCCEEEE--
Confidence 000 0 10 11123455788999999999998755443322 2356998754 343311 0110 0111
Q ss_pred ccchHHHHHHHHhhccccceEEecCCCCCCCCCCceeecCccccc-CCcChHHHHHHhCCCCCCcEEEEEcCCCCch---
Q 003222 161 GHHHRSIVWQIAEDYSHCEFLIRLPGYCPMPAFRDVIDVPLVVRR-LHKSRKEVRKELGIEDDVKLLILNFGGQPAG--- 236 (838)
Q Consensus 161 ~~~~~~i~~~l~~~y~~~d~ll~~~~~~~~p~~~~v~~ip~~~~~-~~~~~~~~r~~l~~~~~~~~Vlvs~Gs~~~~--- 236 (838)
..+.+.+.+.+.....++ ..++++|..... ....+..+++.+++++++++|+++.|+.+..
T Consensus 154 --~s~~~~~~l~~~gi~~~k-------------i~v~G~p~~~~f~~~~~~~~~~~~~~l~~~~~~il~~~G~~~~~k~~ 218 (380)
T PRK13609 154 --ATDHVKKVLVDIGVPPEQ-------------VVETGIPIRSSFELKINPDIIYNKYQLCPNKKILLIMAGAHGVLGNV 218 (380)
T ss_pred --CCHHHHHHHHHcCCChhH-------------EEEECcccChHHcCcCCHHHHHHHcCCCCCCcEEEEEcCCCCCCcCH
Confidence 012222222221111111 122334432211 1123456788889887888888888887752
Q ss_pred hhhHHhhCC-CCcEEE-EeCCCCC----------CCCCCeEECCCCCCHHHHHhhcCEEEecCChhhHHHHHHcCCcEEE
Q 003222 237 WKLKEEYLP-SGWKCL-VCGASDS----------QLPPNFIKLPKDAYTPDFMAASDCMLGKIGYGTVSEALAYKLPFVF 304 (838)
Q Consensus 237 ~~ll~~l~~-~~~~~v-v~G~~~~----------~lp~nv~~~~~~~~~pdlLa~adl~It~gG~~Tv~Eal~~GvP~l~ 304 (838)
..+++.+.. ++++++ ++|.+.. ..+.||++++|+++++++|++||++|+++|..|+.||+++|+|+|+
T Consensus 219 ~~li~~l~~~~~~~~viv~G~~~~~~~~l~~~~~~~~~~v~~~g~~~~~~~l~~~aD~~v~~~gg~t~~EA~a~g~PvI~ 298 (380)
T PRK13609 219 KELCQSLMSVPDLQVVVVCGKNEALKQSLEDLQETNPDALKVFGYVENIDELFRVTSCMITKPGGITLSEAAALGVPVIL 298 (380)
T ss_pred HHHHHHHhhCCCcEEEEEeCCCHHHHHHHHHHHhcCCCcEEEEechhhHHHHHHhccEEEeCCCchHHHHHHHhCCCEEE
Confidence 234444432 456655 4565421 1356899999998899999999999999998899999999999998
Q ss_pred EeCCCCCChHHHHHHHHHcCcEEEEecCCCChhhHHHHHHHHhhCCCCcc---------CCCCHHHHHHHHHHHHh
Q 003222 305 VRRDYFNEEPFLRNMLEFYQGGVEMIRRDLLTGHWKPYLERAISLKPCYE---------GGINGGEVAAHILQETA 371 (838)
Q Consensus 305 iP~~~~~EQ~~Na~~l~~~G~g~~l~~~~~~~~~l~~~l~~ll~~~~~~~---------~~~~g~~~~a~~i~~~~ 371 (838)
... ....|..|+..+++.|+++... + ++.+.++|.++++++..+. ..+...+++++.+.+.+
T Consensus 299 ~~~-~~g~~~~n~~~~~~~G~~~~~~--~--~~~l~~~i~~ll~~~~~~~~m~~~~~~~~~~~s~~~i~~~i~~~~ 369 (380)
T PRK13609 299 YKP-VPGQEKENAMYFERKGAAVVIR--D--DEEVFAKTEALLQDDMKLLQMKEAMKSLYLPEPADHIVDDILAEN 369 (380)
T ss_pred CCC-CCCcchHHHHHHHhCCcEEEEC--C--HHHHHHHHHHHHCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHhh
Confidence 632 2223457999999999987653 2 4688889999987653221 34567778888887764
|
|
| >TIGR01133 murG undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.5e-15 Score=168.83 Aligned_cols=301 Identities=15% Similarity=0.102 Sum_probs=168.1
Q ss_pred EEEEeecCCCcccHHHHHHHHHHHHHCCCeEEEEeCCCCcccccccCCCceeeeeeccCCCcccccccccChHHHHHHHH
Q 003222 17 VFAYYVTGHGFGHATRVVEVVRNLISAGHDVHVVTGAPDFVFTSEIQSPRLFIRKVLLDCGAVQADALTVDRLASLEKYS 96 (838)
Q Consensus 17 ~Il~~v~g~G~GHv~r~laLA~~L~~~Gh~V~~v~~~~~~~~~~~i~~~~~~~~~~~~~~g~~~~~~~~~~~~~~l~~~~ 96 (838)
+|+|.+.|. .||+.++..||++|.++||+|++++..... ........++.++..... +. ........+..+.
T Consensus 2 ~i~~~~g~~-~g~~~~~~~La~~L~~~g~eV~vv~~~~~~-~~~~~~~~g~~~~~i~~~-~~-----~~~~~~~~l~~~~ 73 (348)
T TIGR01133 2 KVVLAAGGT-GGHIFPALAVAEELIKRGVEVLWLGTKRGL-EKRLVPKAGIEFYFIPVG-GL-----RRKGSFRLIKTPL 73 (348)
T ss_pred eEEEEeCcc-HHHHhHHHHHHHHHHhCCCEEEEEeCCCcc-hhcccccCCCceEEEecc-Cc-----CCCChHHHHHHHH
Confidence 565555555 499999999999999999999999863211 111111112222221100 00 0011111111111
Q ss_pred HHhhccHHHHHHHHHHHHhcCCCcEEEECCC---chHHHHHHHhCCcEEEEecCchhHHHHhhhhhcccchHHHHHHHHh
Q 003222 97 ETAVAPRKSILKDEVEWLNSIKADLVVSDVV---PVACRAAADAGIRSVCVTNFSWDFIYAEYVMAAGHHHRSIVWQIAE 173 (838)
Q Consensus 97 ~~~~~~~~~~l~~~~~~L~~~kPDlVVsD~~---~~~~~aA~~lgIP~V~is~~~~~~i~~~~~~~~~~~~~~i~~~l~~ 173 (838)
.. ...+.+..+++++.+||+|+++.. ..+.++++..++|.+.+.. .+. ... ... .
T Consensus 74 ~~-----~~~~~~l~~~i~~~~pDvVi~~~~~~~~~~~~~~~~~~~p~v~~~~-~~~---~~~-------~~~---~--- 131 (348)
T TIGR01133 74 KL-----LKAVFQARRILKKFKPDAVIGFGGYVSGPAGLAAKLLGIPLFHHEQ-NAV---PGL-------TNK---L--- 131 (348)
T ss_pred HH-----HHHHHHHHHHHHhcCCCEEEEcCCcccHHHHHHHHHcCCCEEEECC-CCC---ccH-------HHH---H---
Confidence 11 113345567899999999998752 3345567788999975321 110 000 000 0
Q ss_pred hccccceEEecCCCCCCCCCCceeecCcccccCCcChHHHHHHhCCCCCCcEEEEEcCCCCch--hhhH-H---hhCCCC
Q 003222 174 DYSHCEFLIRLPGYCPMPAFRDVIDVPLVVRRLHKSRKEVRKELGIEDDVKLLILNFGGQPAG--WKLK-E---EYLPSG 247 (838)
Q Consensus 174 ~y~~~d~ll~~~~~~~~p~~~~v~~ip~~~~~~~~~~~~~r~~l~~~~~~~~Vlvs~Gs~~~~--~~ll-~---~l~~~~ 247 (838)
.+..++.++.............+++.|+........ ..++.++++++.++|++..|+.+.. .+++ . .+...+
T Consensus 132 ~~~~~d~ii~~~~~~~~~~~~~~i~n~v~~~~~~~~--~~~~~~~~~~~~~~i~~~gg~~~~~~~~~~l~~a~~~l~~~~ 209 (348)
T TIGR01133 132 LSRFAKKVLISFPGAKDHFEAVLVGNPVRQEIRSLP--VPRERFGLREGKPTILVLGGSQGAKILNELVPKALAKLAEKG 209 (348)
T ss_pred HHHHhCeeEECchhHhhcCCceEEcCCcCHHHhccc--chhhhcCCCCCCeEEEEECCchhHHHHHHHHHHHHHHHhhcC
Confidence 111233333221110000011344455432211111 1123466665666666665555542 1222 2 222234
Q ss_pred cEE-EEeCCCCCC--------CC-CCeEECCCCCCHHHHHhhcCEEEecCChhhHHHHHHcCCcEEEEeCCC-CCChHHH
Q 003222 248 WKC-LVCGASDSQ--------LP-PNFIKLPKDAYTPDFMAASDCMLGKIGYGTVSEALAYKLPFVFVRRDY-FNEEPFL 316 (838)
Q Consensus 248 ~~~-vv~G~~~~~--------lp-~nv~~~~~~~~~pdlLa~adl~It~gG~~Tv~Eal~~GvP~l~iP~~~-~~EQ~~N 316 (838)
+.+ +++|....+ ++ .++..+.+ .+++++|+.||++|+++|.+|+.||+++|+|+|+++.+. ..+|..|
T Consensus 210 ~~~~~~~g~~~~~~l~~~~~~~~l~~~v~~~~-~~~~~~l~~ad~~v~~~g~~~l~Ea~~~g~Pvv~~~~~~~~~~~~~~ 288 (348)
T TIGR01133 210 IQIVHQTGKNDLEKVKNVYQELGIEAIVTFID-ENMAAAYAAADLVISRAGASTVAELAAAGVPAILIPYPYAADDQYYN 288 (348)
T ss_pred cEEEEECCcchHHHHHHHHhhCCceEEecCcc-cCHHHHHHhCCEEEECCChhHHHHHHHcCCCEEEeeCCCCccchhhH
Confidence 544 445654211 11 12322222 268899999999999999889999999999999998643 2457789
Q ss_pred HHHHHHcCcEEEEecCCCChhhHHHHHHHHhhCC
Q 003222 317 RNMLEFYQGGVEMIRRDLLTGHWKPYLERAISLK 350 (838)
Q Consensus 317 a~~l~~~G~g~~l~~~~~~~~~l~~~l~~ll~~~ 350 (838)
++.+++.+.|..++..+.+++.+.++|.++++++
T Consensus 289 ~~~i~~~~~G~~~~~~~~~~~~l~~~i~~ll~~~ 322 (348)
T TIGR01133 289 AKFLEDLGAGLVIRQKELLPEKLLEALLKLLLDP 322 (348)
T ss_pred HHHHHHCCCEEEEecccCCHHHHHHHHHHHHcCH
Confidence 9999999999999887777889999999999765
|
RL J Bacteriol 1993 Mar;175(6):1841-3 |
| >TIGR00215 lpxB lipid-A-disaccharide synthase | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.5e-15 Score=171.44 Aligned_cols=300 Identities=16% Similarity=0.097 Sum_probs=170.7
Q ss_pred EEEEeecCCCcccHHHHHHHHHHHHHCCCeEEEEeCCCCcccccccCCCceeeeeeccCCCcccccccccChHHHHHHHH
Q 003222 17 VFAYYVTGHGFGHATRVVEVVRNLISAGHDVHVVTGAPDFVFTSEIQSPRLFIRKVLLDCGAVQADALTVDRLASLEKYS 96 (838)
Q Consensus 17 ~Il~~v~g~G~GHv~r~laLA~~L~~~Gh~V~~v~~~~~~~~~~~i~~~~~~~~~~~~~~g~~~~~~~~~~~~~~l~~~~ 96 (838)
+|++ +.|.-.||+.++ +|+++|++++++|.|++.....+....++ ..+.+.. ....+ ....+..+.
T Consensus 7 ki~i-~aGgtsGhi~pa-al~~~l~~~~~~~~~~g~gg~~m~~~g~~-~~~~~~~-------l~v~G----~~~~l~~~~ 72 (385)
T TIGR00215 7 TIAL-VAGEASGDILGA-GLRQQLKEHYPNARFIGVAGPRMAAEGCE-VLYSMEE-------LSVMG----LREVLGRLG 72 (385)
T ss_pred eEEE-EeCCccHHHHHH-HHHHHHHhcCCCcEEEEEccHHHHhCcCc-cccChHH-------hhhcc----HHHHHHHHH
Confidence 4533 344447999999 99999999999999886542211111111 0011111 00000 111222232
Q ss_pred HHhhccHHHHHHHHHHHHhcCCCcEEEE-CC-Cch--HHHHHHHhCCcEEEEec---CchhHHHHhhhhhcccchHHHHH
Q 003222 97 ETAVAPRKSILKDEVEWLNSIKADLVVS-DV-VPV--ACRAAADAGIRSVCVTN---FSWDFIYAEYVMAAGHHHRSIVW 169 (838)
Q Consensus 97 ~~~~~~~~~~l~~~~~~L~~~kPDlVVs-D~-~~~--~~~aA~~lgIP~V~is~---~~~~~i~~~~~~~~~~~~~~i~~ 169 (838)
.+ ...+.+..+++++++||+||. |. .+. ...+|+.+|||++.+.. ..|..--... +....+
T Consensus 73 ~~-----~~~~~~~~~~l~~~kPd~vi~~g~~~~~~~~a~aa~~~gip~v~~i~P~~waw~~~~~r~-------l~~~~d 140 (385)
T TIGR00215 73 RL-----LKIRKEVVQLAKQAKPDLLVGIDAPDFNLTKELKKKDPGIKIIYYISPQVWAWRKWRAKK-------IEKATD 140 (385)
T ss_pred HH-----HHHHHHHHHHHHhcCCCEEEEeCCCCccHHHHHHHhhCCCCEEEEeCCcHhhcCcchHHH-------HHHHHh
Confidence 22 234556788899999999995 43 222 23477889999987622 2232000000 011111
Q ss_pred HHHhhccccceEEecCCCCCCCCCCceeecCcccccCC--cChHHHHHHhCCCCCCcEEEEEcCCCCch-hh----hHH-
Q 003222 170 QIAEDYSHCEFLIRLPGYCPMPAFRDVIDVPLVVRRLH--KSRKEVRKELGIEDDVKLLILNFGGQPAG-WK----LKE- 241 (838)
Q Consensus 170 ~l~~~y~~~d~ll~~~~~~~~p~~~~v~~ip~~~~~~~--~~~~~~r~~l~~~~~~~~Vlvs~Gs~~~~-~~----ll~- 241 (838)
.+.-.+.....++. .......+++.|.....+. ..+.+.++.+++++++++|++..||.+.. .+ +++
T Consensus 141 ~v~~~~~~e~~~~~-----~~g~~~~~vGnPv~~~~~~~~~~~~~~r~~lgl~~~~~~Ilvl~GSR~aei~k~~~~ll~a 215 (385)
T TIGR00215 141 FLLAILPFEKAFYQ-----KKNVPCRFVGHPLLDAIPLYKPDRKSAREKLGIDHNGETLALLPGSRGSEVEKLFPLFLKA 215 (385)
T ss_pred HhhccCCCcHHHHH-----hcCCCEEEECCchhhhccccCCCHHHHHHHcCCCCCCCEEEEECCCCHHHHHHhHHHHHHH
Confidence 11111100000000 0000012334444322221 34667788899888888998998988764 12 221
Q ss_pred --hhC--CCCcEEEEeC-CCC--CC-------C--CCCeEECCCCCCHHHHHhhcCEEEecCChhhHHHHHHcCCcEEEE
Q 003222 242 --EYL--PSGWKCLVCG-ASD--SQ-------L--PPNFIKLPKDAYTPDFMAASDCMLGKIGYGTVSEALAYKLPFVFV 305 (838)
Q Consensus 242 --~l~--~~~~~~vv~G-~~~--~~-------l--p~nv~~~~~~~~~pdlLa~adl~It~gG~~Tv~Eal~~GvP~l~i 305 (838)
.+. .+++.+++.+ ... .. . ...+..+ ..+++++|++||++|+.+|..|+ |++++|+|+|++
T Consensus 216 ~~~l~~~~p~~~~vi~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~~~~l~aADl~V~~SGt~tl-Ea~a~G~P~Vv~ 292 (385)
T TIGR00215 216 AQLLEQQEPDLRRVLPVVNFKRRLQFEQIKAEYGPDLQLHLI--DGDARKAMFAADAALLASGTAAL-EAALIKTPMVVG 292 (385)
T ss_pred HHHHHHhCCCeEEEEEeCCchhHHHHHHHHHHhCCCCcEEEE--CchHHHHHHhCCEEeecCCHHHH-HHHHcCCCEEEE
Confidence 221 1355554432 211 10 1 2234333 34678999999999999997776 999999999999
Q ss_pred ----eCCCCC-------ChHHHHHHHHHcCcEEEEecCCCChhhHHHHHHHHhhCC
Q 003222 306 ----RRDYFN-------EEPFLRNMLEFYQGGVEMIRRDLLTGHWKPYLERAISLK 350 (838)
Q Consensus 306 ----P~~~~~-------EQ~~Na~~l~~~G~g~~l~~~~~~~~~l~~~l~~ll~~~ 350 (838)
|.+.+. .|..|++.+...++...+-.++.+++.+.+.+.++++++
T Consensus 293 yk~~pl~~~~~~~~~~~~~~~~~nil~~~~~~pel~q~~~~~~~l~~~~~~ll~~~ 348 (385)
T TIGR00215 293 YRMKPLTFLIARRLVKTDYISLPNILANRLLVPELLQEECTPHPLAIALLLLLENG 348 (385)
T ss_pred EcCCHHHHHHHHHHHcCCeeeccHHhcCCccchhhcCCCCCHHHHHHHHHHHhcCC
Confidence 643221 255688889999999888888899999999999999776
|
Lipid-A precursor biosynthesis producing lipid A disaccharide in a condensation reaction. transcribed as part of an operon including lpxA |
| >TIGR00154 ispE 4-diphosphocytidyl-2C-methyl-D-erythritol kinase | Back alignment and domain information |
|---|
Probab=99.67 E-value=4.9e-16 Score=168.27 Aligned_cols=170 Identities=15% Similarity=0.161 Sum_probs=128.4
Q ss_pred EEEcccccccccccccc-CCCe----eeccccccceEEEEEEcCCccchhhhhhhhccCCCCCCCCCeEEEEecccccCC
Q 003222 499 VARAPGRLDVMGGIADY-SGSL----VLQMPIREACHVALQKISPSKQRLWKHALARHNDKGQGPMPVLQIVSYGSELSN 573 (838)
Q Consensus 499 ~~~APGRv~L~GeH~Dy-~gg~----vl~~ai~~~~~v~~~~~~d~~~~l~~~~~~~~~~~~~~~~~~i~i~s~~~~~~~ 573 (838)
+++|||||||+|+|+|| ++|+ +++++|+++.++.+.+++++. +++.+.
T Consensus 3 ~~~apaKiNL~l~i~~~r~dGyH~l~sl~~~i~l~d~v~i~~~~~~~---------------------i~~~~~------ 55 (293)
T TIGR00154 3 VFPSPAKLNLFLYITGKRPDGYHELQTLMQFLDLGDKIIISVRSDDD---------------------IRLLKG------ 55 (293)
T ss_pred eEeecccEEEEEecCCcCCCCCcceEEEEEEeccCcEEEEEECCCCc---------------------EEEeeC------
Confidence 46899999999999998 7788 999999999999998876533 333221
Q ss_pred CCCceeccCCccccCCCCcchhhhhcccCCCCCCChhHHHHHHHHHHHHHhCCC--CCCCEEEEEEeCCCCCCCCChHHH
Q 003222 574 RGPTFDMDLSDFMDEGKPMSYEKAKKYFDTNPSQKWAAYVAGTILVLMTELGVR--FEDSISMLVSSAVPEGKGVSSSAS 651 (838)
Q Consensus 574 ~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~~~~~~w~~y~~g~i~~~~~~~g~~--~~~g~~i~i~s~iP~g~GLgSSAA 651 (838)
. .++ +.. .||+..++..+.+..+.. ...|+++.|.++||.|+|||||||
T Consensus 56 ---~--~~~----------------------~~~--~nlv~~a~~~l~~~~~~~~~~~~~~~i~i~~~iP~~aGLGsssa 106 (293)
T TIGR00154 56 ---D--FDV----------------------PLE--ENLIYRAAQLLKNFANSKIKSLDGANIEIDKNIPMGAGLGGGSS 106 (293)
T ss_pred ---C--CCC----------------------CCC--CcHHHHHHHHHHHHhcccccCCCCeEEEEeccCCCCCCcchhHH
Confidence 0 010 001 288988888877666521 226999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhhhcCCCCChhhHHHhhcCCCCeEEEEEecCCceeeeeccCCCeEEEEEe
Q 003222 652 VEVASMSAIAAAHGLNIHPRDLALLCQKVENHIVGAPCGVMDQMASACGEANKLLAMVCQPAELLGVVEIPSHIRFWGID 731 (838)
Q Consensus 652 ~~va~~~al~~l~~~~l~~~ela~~a~~~E~~~~G~~~G~mDq~a~~~G~~~~~l~~d~~~~~~~~~v~~~~~~~~vi~~ 731 (838)
.++|++.+++.+++.++++++++++|.++| .|-..+++||. .+. ....+...+++.+.+..+++++
T Consensus 107 ~aaa~l~al~~~~~~~l~~~~l~~la~~lg----------~Dv~~~~~gg~---~~~-~g~ge~~~~l~~~~~~~~vl~~ 172 (293)
T TIGR00154 107 DAATVLVGLNQLWQLGLSLEELAELGLTLG----------ADVPFFVSGHA---AFA-TGVGEIITPFEDPPEKWVVIAK 172 (293)
T ss_pred HHHHHHHHHHHHhCCCcCHHHHHHHHHHhC----------CCcceEEECCe---EEE-EecCcEEEECCCCCCcEEEEEc
Confidence 999999999999999999999999999774 37677888984 333 3333333455544567788998
Q ss_pred CCCCCcC
Q 003222 732 SGIRHSV 738 (838)
Q Consensus 732 s~~~~~~ 738 (838)
++..-++
T Consensus 173 p~~~~sT 179 (293)
T TIGR00154 173 PHVSIST 179 (293)
T ss_pred CCCCcCh
Confidence 8877654
|
Members of this family of GHMP kinases were previously designated as conserved hypothetical protein YchB or as isopentenyl monophosphate kinase. It is now known, in tomato and E. coli, to encode 4-diphosphocytidyl-2C-methyl-D-erythritol kinase, an enzyme of the deoxyxylulose phosphate pathway of terpenoid biosynthesis. |
| >PRK00128 ipk 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional | Back alignment and domain information |
|---|
Probab=99.67 E-value=7.9e-16 Score=166.74 Aligned_cols=170 Identities=15% Similarity=0.239 Sum_probs=129.4
Q ss_pred EEEEccccccc----cccccc-cCCCeeeccccccceEEEEEEcCCccchhhhhhhhccCCCCCCCCCeEEEEecccccC
Q 003222 498 FVARAPGRLDV----MGGIAD-YSGSLVLQMPIREACHVALQKISPSKQRLWKHALARHNDKGQGPMPVLQIVSYGSELS 572 (838)
Q Consensus 498 ~~~~APGRv~L----~GeH~D-y~gg~vl~~ai~~~~~v~~~~~~d~~~~l~~~~~~~~~~~~~~~~~~i~i~s~~~~~~ 572 (838)
+.++||||||| +|+|.| |++..++.+||+++.++.+++.++.. +.+.+.
T Consensus 3 ~~~~apakinl~l~i~g~~~dg~h~l~si~~ai~l~~~v~v~~~~~~~---------------------~~i~~~----- 56 (286)
T PRK00128 3 ILEKAPAKINLSLDVLGKREDGYHEVEMIMQTIDLADRLEIEKLKEDG---------------------IVVESN----- 56 (286)
T ss_pred EEEeccceEEEEeecCccCCCCcceeheeeEecCCCcEEEEEECCCCC---------------------EEEEeC-----
Confidence 56789999999 899999 99999999999999999998875432 222210
Q ss_pred CCCCceeccCCccccCCCCcchhhhhcccCCCCCCChhHHHHHHHHHHHHHhCCCCCCCEEEEEEeCCCCCCCCChHHHH
Q 003222 573 NRGPTFDMDLSDFMDEGKPMSYEKAKKYFDTNPSQKWAAYVAGTILVLMTELGVRFEDSISMLVSSAVPEGKGVSSSASV 652 (838)
Q Consensus 573 ~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~~~~~~w~~y~~g~i~~~~~~~g~~~~~g~~i~i~s~iP~g~GLgSSAA~ 652 (838)
+ ... + .+|.|++..++..+.+..+.. .|+++.|.++||.|+|||||||.
T Consensus 57 --------~-~~~-------------------~-~~~~n~~~~~~~~~~~~~~~~--~~~~i~i~~~iP~~~GLGSSsa~ 105 (286)
T PRK00128 57 --------N-RYV-------------------P-NDERNLAYKAAKLLKERYNIK--QGVSITIDKNIPVAAGLAGGSSD 105 (286)
T ss_pred --------C-CCC-------------------C-CCCCcHHHHHHHHHHHhcCCC--CCeEEEEEcCCCccccchHHHHH
Confidence 0 000 0 235677777777777666643 68999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHhhhcCCCCChhhHHHhhcCCCCeEEEEEecCCceeeeeccCCCeEEEEEeC
Q 003222 653 EVASMSAIAAAHGLNIHPRDLALLCQKVENHIVGAPCGVMDQMASACGEANKLLAMVCQPAELLGVVEIPSHIRFWGIDS 732 (838)
Q Consensus 653 ~va~~~al~~l~~~~l~~~ela~~a~~~E~~~~G~~~G~mDq~a~~~G~~~~~l~~d~~~~~~~~~v~~~~~~~~vi~~s 732 (838)
.+|++.+++.++|.++++++++++|.++| .|..++++||. .+.+.+ .+...+++.+++..++++++
T Consensus 106 a~a~~~al~~~~~~~l~~~~l~~~a~~~g----------~dv~~~~~Gg~---~~~~~~-g~~~~~~~~~~~~~~vv~~p 171 (286)
T PRK00128 106 AAATLRGLNKLWNLGLSLEELAEIGLEIG----------SDVPFCIYGGT---ALATGR-GEKITPLKSPPSCWVVLAKP 171 (286)
T ss_pred HHHHHHHHHHHhcCCcCHHHHHHHHHHhC----------CCCCeEeeCCe---EEEecC-CcccccCCCCCCcEEEEEcC
Confidence 99999999999999999999999999875 27778889984 333322 22224555445677889988
Q ss_pred CCCCcC
Q 003222 733 GIRHSV 738 (838)
Q Consensus 733 ~~~~~~ 738 (838)
+...++
T Consensus 172 ~~~~~T 177 (286)
T PRK00128 172 DIGVST 177 (286)
T ss_pred CCCCCH
Confidence 876554
|
|
| >PRK02534 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.1e-15 Score=167.51 Aligned_cols=170 Identities=12% Similarity=0.200 Sum_probs=129.4
Q ss_pred EEEEccccccc----cccccc-cCCCeeeccccccceEEEEEEcCCccchhhhhhhhccCCCCCCCCCeEEEEecccccC
Q 003222 498 FVARAPGRLDV----MGGIAD-YSGSLVLQMPIREACHVALQKISPSKQRLWKHALARHNDKGQGPMPVLQIVSYGSELS 572 (838)
Q Consensus 498 ~~~~APGRv~L----~GeH~D-y~gg~vl~~ai~~~~~v~~~~~~d~~~~l~~~~~~~~~~~~~~~~~~i~i~s~~~~~~ 572 (838)
+.++||||||| +|+|.| |+++.++.++|+++.++.++++++.. +.+.+..
T Consensus 4 ~~~~apakiNL~L~i~g~~~dGy~~l~~~~~~i~l~d~v~v~~~~~~~---------------------~~~~~~~---- 58 (312)
T PRK02534 4 YTLIAPAKINLHLEILGDRPDGFHELAMVMQSIDLADRLELRNNGDGT---------------------IRLHCDH---- 58 (312)
T ss_pred EEEEeceEEEeccccCccCCCCCCceEEEEEECCCCCEEEEEECCCCc---------------------EEEEECC----
Confidence 45789999999 799999 99999999999999999998875432 2222100
Q ss_pred CCCCceeccCCccccCCCCcchhhhhcccCCCCCCChhHHHHHHHHHHHHHhCCCCCCCEEEEEEeCCCCCCCCChHHHH
Q 003222 573 NRGPTFDMDLSDFMDEGKPMSYEKAKKYFDTNPSQKWAAYVAGTILVLMTELGVRFEDSISMLVSSAVPEGKGVSSSASV 652 (838)
Q Consensus 573 ~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~~~~~~w~~y~~g~i~~~~~~~g~~~~~g~~i~i~s~iP~g~GLgSSAA~ 652 (838)
..+ | .+..|++..++..++++.+.+. .|++|.|.++||.|+|||||||.
T Consensus 59 ----------~~~-----~---------------~~~~n~~~~~~~~~~~~~~~~~-~~~~i~i~~~IP~~~GLGSssa~ 107 (312)
T PRK02534 59 ----------PQL-----S---------------TDDDNLIYRAAQLLRKRFPFAE-GGVDITLEKRIPIGAGLAGGSTD 107 (312)
T ss_pred ----------CCC-----C---------------CCchhHHHHHHHHHHHHhCCCC-CCeEEEEecCCCCcCCccHHHHH
Confidence 000 0 1125788888887776667643 58999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHhhhcCCCCChhhHHHhhcCCCCeEEEEEecCCceeeeeccCCCeEEEEE-e
Q 003222 653 EVASMSAIAAAHGLNIHPRDLALLCQKVENHIVGAPCGVMDQMASACGEANKLLAMVCQPAELLGVVEIPSHIRFWGI-D 731 (838)
Q Consensus 653 ~va~~~al~~l~~~~l~~~ela~~a~~~E~~~~G~~~G~mDq~a~~~G~~~~~l~~d~~~~~~~~~v~~~~~~~~vi~-~ 731 (838)
++|++.|++.+++.++++++++++|.++|. |-.++.+||. .+.....+...+++.|.++.++++ +
T Consensus 108 ~~A~~~al~~~~~~~l~~~~l~~~a~~~g~----------dv~~~~~GG~----~~~~~~g~~~~~~~~~~~~~~vv~~~ 173 (312)
T PRK02534 108 AAAVLVGLNLLWGLGLTQPELESLAAELGS----------DVPFCIAGGT----QLCFGRGEILEPLPDLDGLGVVLAKY 173 (312)
T ss_pred HHHHHHHHHHHhCCCcCHHHHHHHHHHhCC----------CCcEEeECCe----EEEECCCCEeEECCCCCCcEEEEEEC
Confidence 999999999999999999999999998762 4466888883 233333343356766678888886 6
Q ss_pred CCCCCc
Q 003222 732 SGIRHS 737 (838)
Q Consensus 732 s~~~~~ 737 (838)
++..-+
T Consensus 174 p~~~~~ 179 (312)
T PRK02534 174 PSLSVS 179 (312)
T ss_pred CCCCcc
Confidence 777643
|
|
| >PF10509 GalKase_gal_bdg: Galactokinase galactose-binding signature; InterPro: IPR019539 This entry represents a highly conserved galactokinase signature sequence which appears to be present in all galactokinases, irrespective of how many other ATP binding sites, etc that they carry [] | Back alignment and domain information |
|---|
Probab=99.65 E-value=4.6e-17 Score=127.08 Aligned_cols=50 Identities=36% Similarity=0.533 Sum_probs=41.2
Q ss_pred HHhccCCCCCceEEEEccccccccccccccCCCeeeccccccceEEEEEEc
Q 003222 486 AAAGLFNWEEEIFVARAPGRLDVMGGIADYSGSLVLQMPIREACHVALQKI 536 (838)
Q Consensus 486 ~~~~~f~~~~~~~~~~APGRv~L~GeH~Dy~gg~vl~~ai~~~~~v~~~~~ 536 (838)
.+...||.+++ .+++||||||||||||||+||.|||+||+++|++++++|
T Consensus 3 ~F~~~fg~~p~-~~~~APGRvnliGeHtDy~gG~Vl~~Ai~~~~~~a~~~r 52 (52)
T PF10509_consen 3 EFEEFFGEEPE-VVASAPGRVNLIGEHTDYNGGFVLPAAIDLRTYVAVSPR 52 (52)
T ss_dssp HHHHHHSS--S-EEEEEEEEEEEE-TT-GGGT-EEEEEEEEEEEEEEEEEE
T ss_pred hHHHHhCCCCC-EEEECCceEEecCcccccCCCeEEEEEeeccEEEEEEcC
Confidence 46678997665 599999999999999999999999999999999999986
|
The function of this domain appears to be to bind galactose [], and it is normally located at the N terminus of these enzymes []. It is associated with IPR013750 from INTERPRO and IPR006204 from INTERPRO. While all enzymes in this entry posses galactokinase activity, some are annotated as N-acetylgalactosamine kinases as they also posses this enzyme activity.; PDB: 1PIE_A 1WUU_A 1S4E_D 2A2C_A 2A2D_A 2AJ4_A 2DEJ_A 2CZ9_A 2DEI_A 3V5R_A .... |
| >COG3980 spsG Spore coat polysaccharide biosynthesis protein, predicted glycosyltransferase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.52 E-value=6.5e-13 Score=136.36 Aligned_cols=273 Identities=17% Similarity=0.142 Sum_probs=160.1
Q ss_pred EEEEee---cCCCcccHHHHHHHHHHHHHCCCeEEEEeCCCCcccccccCCCceeeeeeccCCCcccccccccChHHHHH
Q 003222 17 VFAYYV---TGHGFGHATRVVEVVRNLISAGHDVHVVTGAPDFVFTSEIQSPRLFIRKVLLDCGAVQADALTVDRLASLE 93 (838)
Q Consensus 17 ~Il~~v---~g~G~GHv~r~laLA~~L~~~Gh~V~~v~~~~~~~~~~~i~~~~~~~~~~~~~~g~~~~~~~~~~~~~~l~ 93 (838)
+|+|.+ ...|+||++|++.||++|.++|..++|++...- ...++ +. ++ + +..
T Consensus 2 ~V~i~~Dgg~~iGmGHV~R~l~LA~~l~k~~~~~~fl~k~~~---e~~~~-------~~-~~-~------f~~------- 56 (318)
T COG3980 2 KVLIRCDGGLEIGMGHVMRTLTLARELEKRGFACLFLTKQDI---EAIIH-------KV-YE-G------FKV------- 56 (318)
T ss_pred cEEEEecCCcccCcchhhhHHHHHHHHHhcCceEEEecccch---hhhhh-------hh-hh-h------ccc-------
Confidence 444454 345899999999999999999999999987430 11110 10 00 0 000
Q ss_pred HHHHHhhccHHHHHHHHHHHHhcCCCcEEEECCCchHH----HHHHHhCCcEEEEecCchhHHHHhhhhhcccchHHHHH
Q 003222 94 KYSETAVAPRKSILKDEVEWLNSIKADLVVSDVVPVAC----RAAADAGIRSVCVTNFSWDFIYAEYVMAAGHHHRSIVW 169 (838)
Q Consensus 94 ~~~~~~~~~~~~~l~~~~~~L~~~kPDlVVsD~~~~~~----~aA~~lgIP~V~is~~~~~~i~~~~~~~~~~~~~~i~~ 169 (838)
...+....+++.++|++|.|++-... .....++.+.+.+++..-.... + .+.++.
T Consensus 57 ------------~~~~~~n~ik~~k~d~lI~Dsygl~~dd~k~ik~e~~~k~l~fDd~~~~~~~--d-------~d~ivN 115 (318)
T COG3980 57 ------------LEGRGNNLIKEEKFDLLIFDSYGLNADDFKLIKEEAGSKILIFDDENAKSFK--D-------NDLIVN 115 (318)
T ss_pred ------------eeeecccccccccCCEEEEeccCCCHHHHHHHHHHhCCcEEEecCCCccchh--h-------hHhhhh
Confidence 00011225789999999999865544 3444678999998765421111 0 112222
Q ss_pred HHHhhccccceEEecCCCCCCCCCCceeecCcccccCCcChHHHHHHhCCCCCCcEEEEEcCCCCch---hhhHHhhCCC
Q 003222 170 QIAEDYSHCEFLIRLPGYCPMPAFRDVIDVPLVVRRLHKSRKEVRKELGIEDDVKLLILNFGGQPAG---WKLKEEYLPS 246 (838)
Q Consensus 170 ~l~~~y~~~d~ll~~~~~~~~p~~~~v~~ip~~~~~~~~~~~~~r~~l~~~~~~~~Vlvs~Gs~~~~---~~ll~~l~~~ 246 (838)
++... .+. +...|...+ ...|+...+.++.-..+|+..-.. +..-|++++||.... .+++..+.+.
T Consensus 116 ~~~~a---~~~------y~~v~~k~~-~~lGp~y~~lr~eF~~~r~~~~~r-~~r~ilI~lGGsDpk~lt~kvl~~L~~~ 184 (318)
T COG3980 116 AILNA---NDY------YGLVPNKTR-YYLGPGYAPLRPEFYALREENTER-PKRDILITLGGSDPKNLTLKVLAELEQK 184 (318)
T ss_pred hhhcc---hhh------ccccCcceE-EEecCCceeccHHHHHhHHHHhhc-chheEEEEccCCChhhhHHHHHHHhhcc
Confidence 21110 000 000111111 122221111111011222222111 344699999988764 4566666655
Q ss_pred CcEE-EEeCCCCCC---------CCCCeEECCCCCCHHHHHhhcCEEEecCChhhHHHHHHcCCcEEEEeCCCCCChHHH
Q 003222 247 GWKC-LVCGASDSQ---------LPPNFIKLPKDAYTPDFMAASDCMLGKIGYGTVSEALAYKLPFVFVRRDYFNEEPFL 316 (838)
Q Consensus 247 ~~~~-vv~G~~~~~---------lp~nv~~~~~~~~~pdlLa~adl~It~gG~~Tv~Eal~~GvP~l~iP~~~~~EQ~~N 316 (838)
++.+ +|+|+..+. ..+|+..+-+..+|+.+|..||+.|+.+| .|++|++..|+|.++++ ....|..-
T Consensus 185 ~~nl~iV~gs~~p~l~~l~k~~~~~~~i~~~~~~~dma~LMke~d~aI~AaG-stlyEa~~lgvP~l~l~--~a~NQ~~~ 261 (318)
T COG3980 185 NVNLHIVVGSSNPTLKNLRKRAEKYPNINLYIDTNDMAELMKEADLAISAAG-STLYEALLLGVPSLVLP--LAENQIAT 261 (318)
T ss_pred CeeEEEEecCCCcchhHHHHHHhhCCCeeeEecchhHHHHHHhcchheeccc-hHHHHHHHhcCCceEEe--eeccHHHH
Confidence 5433 456755543 24677666667789999999999999888 89999999999999999 44566778
Q ss_pred HHHHHHcCcEEEEecCCCChhhHHHHHHHHhhCC
Q 003222 317 RNMLEFYQGGVEMIRRDLLTGHWKPYLERAISLK 350 (838)
Q Consensus 317 a~~l~~~G~g~~l~~~~~~~~~l~~~l~~ll~~~ 350 (838)
|++++..|+...+... +........+.++.++.
T Consensus 262 a~~f~~lg~~~~l~~~-l~~~~~~~~~~~i~~d~ 294 (318)
T COG3980 262 AKEFEALGIIKQLGYH-LKDLAKDYEILQIQKDY 294 (318)
T ss_pred HHHHHhcCchhhccCC-CchHHHHHHHHHhhhCH
Confidence 9999999998877654 33344555555655443
|
|
| >PF00288 GHMP_kinases_N: GHMP kinases N terminal domain; InterPro: IPR006204 The galacto- (2 | Back alignment and domain information |
|---|
Probab=99.50 E-value=6.4e-14 Score=117.17 Aligned_cols=67 Identities=39% Similarity=0.607 Sum_probs=63.7
Q ss_pred EEEEEeCCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhhhcCCCCChhhHHHhhcCC
Q 003222 633 SMLVSSAVPEGKGVSSSASVEVASMSAIAAAHGLNIHPRDLALLCQKVENHIVGAPCGVMDQMASACGE 701 (838)
Q Consensus 633 ~i~i~s~iP~g~GLgSSAA~~va~~~al~~l~~~~l~~~ela~~a~~~E~~~~G~~~G~mDq~a~~~G~ 701 (838)
++.++|+||.++|||||||+.+|++.+++.+++.++++.+++++++.+|+.+ |.++| +|+++++|||
T Consensus 1 ~i~i~s~iP~~~GLgSSaa~~~a~~~a~~~~~~~~~~~~~l~~~a~~~e~~~-g~~~g-~d~~~~~~GG 67 (67)
T PF00288_consen 1 DIEIDSNIPPGSGLGSSAALAVALAAALNKLFGLPLSKEELAKLAQEAERYI-GKPSG-IDDAASAYGG 67 (67)
T ss_dssp EEEEEESSTTTSSSSHHHHHHHHHHHHHHHHTTTSSBHHHHHHHHHHHHHHC-SSSHS-HHHHHHHHCS
T ss_pred CeEEEccCCCCCcccHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHc-CCCCh-hhHHHHHhCc
Confidence 5899999999999999999999999999999999999999999999999777 99998 5779999997
|
7.1.6 from EC), homoserine (2.7.1.39 from EC), mevalonate (2.7.1.36 from EC) and phosphomevalonate (2.7.4.2 from EC) kinases contain, in their N-terminal section, a conserved Gly/Ser-rich region which is probably involved in the binding of ATP [, ]. This group of kinases has been called 'GHMP' (from the first letter of their substrates).; GO: 0005524 ATP binding, 0016301 kinase activity, 0016310 phosphorylation; PDB: 3F0N_B 1PIE_A 2AJ4_A 1K47_E 3GON_A 2R3V_C 3HUL_A 1KVK_A 2R42_A 3D4J_A .... |
| >PRK00025 lpxB lipid-A-disaccharide synthase; Reviewed | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.4e-12 Score=147.05 Aligned_cols=316 Identities=16% Similarity=0.121 Sum_probs=165.1
Q ss_pred EEEEEeecCCCcccHHHHHHHHHHHHHCCCeEEEEeCCCCcccccccCCCceeeeeeccCCCcccccccccChHHHHHHH
Q 003222 16 LVFAYYVTGHGFGHATRVVEVVRNLISAGHDVHVVTGAPDFVFTSEIQSPRLFIRKVLLDCGAVQADALTVDRLASLEKY 95 (838)
Q Consensus 16 ~~Il~~v~g~G~GHv~r~laLA~~L~~~Gh~V~~v~~~~~~~~~~~i~~~~~~~~~~~~~~g~~~~~~~~~~~~~~l~~~ 95 (838)
|+|++. .|.-.||+.++. ++++|+++++++.+++.....+....+. ..+.+.. ... ......+..+
T Consensus 2 ~ki~i~-~Ggt~G~i~~a~-l~~~L~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~----l~~-------~g~~~~~~~~ 67 (380)
T PRK00025 2 LRIAIV-AGEVSGDLLGAG-LIRALKARAPNLEFVGVGGPRMQAAGCE-SLFDMEE----LAV-------MGLVEVLPRL 67 (380)
T ss_pred ceEEEE-ecCcCHHHHHHH-HHHHHHhcCCCcEEEEEccHHHHhCCCc-cccCHHH----hhh-------ccHHHHHHHH
Confidence 356443 444479999999 9999999888888776432222221111 0110000 000 0011111111
Q ss_pred HHHhhccHHHHHHHHHHHHhcCCCcEEEEC-CC-chH--HHHHHHhCCcEEEE-ecCchhHHHHhhhhhcccchHHHHHH
Q 003222 96 SETAVAPRKSILKDEVEWLNSIKADLVVSD-VV-PVA--CRAAADAGIRSVCV-TNFSWDFIYAEYVMAAGHHHRSIVWQ 170 (838)
Q Consensus 96 ~~~~~~~~~~~l~~~~~~L~~~kPDlVVsD-~~-~~~--~~aA~~lgIP~V~i-s~~~~~~i~~~~~~~~~~~~~~i~~~ 170 (838)
.. ....+....+++++++||+|++. +. ++. ..+++..+||++.+ ++..|... ... ...+..
T Consensus 68 ~~-----~~~~~~~~~~~l~~~kPdivi~~~~~~~~~~~a~~a~~~~ip~i~~~~~~~~~~~-~~~-------~~~~~~- 133 (380)
T PRK00025 68 PR-----LLKIRRRLKRRLLAEPPDVFIGIDAPDFNLRLEKKLRKAGIPTIHYVSPSVWAWR-QGR-------AFKIAK- 133 (380)
T ss_pred HH-----HHHHHHHHHHHHHHcCCCEEEEeCCCCCCHHHHHHHHHCCCCEEEEeCCchhhcC-chH-------HHHHHH-
Confidence 11 11234456788999999999864 22 233 23356789998776 33223100 000 000000
Q ss_pred HHhhccccceEEec-CCC------CCCCCCCceeecCccccc-CCcChHHHHHHhCCCCCCcEEEEEcCCCCchh-----
Q 003222 171 IAEDYSHCEFLIRL-PGY------CPMPAFRDVIDVPLVVRR-LHKSRKEVRKELGIEDDVKLLILNFGGQPAGW----- 237 (838)
Q Consensus 171 l~~~y~~~d~ll~~-~~~------~~~p~~~~v~~ip~~~~~-~~~~~~~~r~~l~~~~~~~~Vlvs~Gs~~~~~----- 237 (838)
.++.++.. +.. ...+ ..+++.|..... ....+.++++.+++++++++|++..||.+...
T Consensus 134 ------~~d~i~~~~~~~~~~~~~~g~~--~~~~G~p~~~~~~~~~~~~~~~~~l~~~~~~~~il~~~gsr~~~~~~~~~ 205 (380)
T PRK00025 134 ------ATDHVLALFPFEAAFYDKLGVP--VTFVGHPLADAIPLLPDRAAARARLGLDPDARVLALLPGSRGQEIKRLLP 205 (380)
T ss_pred ------HHhhheeCCccCHHHHHhcCCC--eEEECcCHHHhcccccChHHHHHHcCCCCCCCEEEEECCCCHHHHHHHHH
Confidence 01111110 000 0000 112233322211 12235677888888777777778778765431
Q ss_pred hhHH---hhC--CCCcEEEEeCC-CCC--C-------C-CCCeEECCCCCCHHHHHhhcCEEEecCChhhHHHHHHcCCc
Q 003222 238 KLKE---EYL--PSGWKCLVCGA-SDS--Q-------L-PPNFIKLPKDAYTPDFMAASDCMLGKIGYGTVSEALAYKLP 301 (838)
Q Consensus 238 ~ll~---~l~--~~~~~~vv~G~-~~~--~-------l-p~nv~~~~~~~~~pdlLa~adl~It~gG~~Tv~Eal~~GvP 301 (838)
.+.+ .+. .+++.+++.|. ... . . .-++.+. ...++++|+.||++|+.+|.+++ |++++|+|
T Consensus 206 ~l~~a~~~l~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~~~~~~~aDl~v~~sG~~~l-Ea~a~G~P 282 (380)
T PRK00025 206 PFLKAAQLLQQRYPDLRFVLPLVNPKRREQIEEALAEYAGLEVTLL--DGQKREAMAAADAALAASGTVTL-ELALLKVP 282 (380)
T ss_pred HHHHHHHHHHHhCCCeEEEEecCChhhHHHHHHHHhhcCCCCeEEE--cccHHHHHHhCCEEEECccHHHH-HHHHhCCC
Confidence 1122 122 13556665543 221 1 2 2345443 35689999999999999997666 99999999
Q ss_pred EEEEeCCCCCChHHHHHHH------------HHcCcEEEEecCCCChhhHHHHHHHHhhCCCCcc-----------C-CC
Q 003222 302 FVFVRRDYFNEEPFLRNML------------EFYQGGVEMIRRDLLTGHWKPYLERAISLKPCYE-----------G-GI 357 (838)
Q Consensus 302 ~l~iP~~~~~EQ~~Na~~l------------~~~G~g~~l~~~~~~~~~l~~~l~~ll~~~~~~~-----------~-~~ 357 (838)
+|++|.... =+...++.+ ...+++..+..++.+++.+.+.+.++++++.... . .+
T Consensus 283 vI~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~~~~~~~~~~~ 361 (380)
T PRK00025 283 MVVGYKVSP-LTFWIAKRLVKVPYVSLPNLLAGRELVPELLQEEATPEKLARALLPLLADGARRQALLEGFTELHQQLRC 361 (380)
T ss_pred EEEEEccCH-HHHHHHHHHHcCCeeehHHHhcCCCcchhhcCCCCCHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCC
Confidence 999974311 111233333 2233333344456677899999999998764221 1 44
Q ss_pred CHHHHHHHHHHHHh
Q 003222 358 NGGEVAAHILQETA 371 (838)
Q Consensus 358 ~g~~~~a~~i~~~~ 371 (838)
+++.++++.|.+++
T Consensus 362 ~a~~~~~~~i~~~~ 375 (380)
T PRK00025 362 GADERAAQAVLELL 375 (380)
T ss_pred CHHHHHHHHHHHHh
Confidence 56677777776654
|
|
| >TIGR01219 Pmev_kin_ERG8 phosphomevalonate kinase, ERG8-type, eukaryotic branch | Back alignment and domain information |
|---|
Probab=99.48 E-value=1.5e-12 Score=146.76 Aligned_cols=209 Identities=17% Similarity=0.169 Sum_probs=139.0
Q ss_pred EEccccccccccccccC-CCeeeccccccceEEEEEEcCCccchhhhhhhhccCCCCCCCCCeEEEEecccccCCCCCce
Q 003222 500 ARAPGRLDVMGGIADYS-GSLVLQMPIREACHVALQKISPSKQRLWKHALARHNDKGQGPMPVLQIVSYGSELSNRGPTF 578 (838)
Q Consensus 500 ~~APGRv~L~GeH~Dy~-gg~vl~~ai~~~~~v~~~~~~d~~~~l~~~~~~~~~~~~~~~~~~i~i~s~~~~~~~~~~~~ 578 (838)
++|||||-|.||..+.- |...+-+|++.+.|+.+++..... ..+ ..+|.|.|.. +.+. .+
T Consensus 2 ~sAPGKlliAGgYlVLep~y~aiVval~~r~~a~v~~~~~~~-~~~--------------~~~i~v~SpQ--f~~~--~~ 62 (454)
T TIGR01219 2 ASAPGKVLMAGGYLVLDKPYAGLVLGLNARFYAIVKPINEEV-GAW--------------KWDVRVKSPQ--FSDR--EW 62 (454)
T ss_pred cccCceEEEecceEEecCCCcEEEEEecceEEEEEeeccccc-ccC--------------cceEEEeCCC--CCCC--ce
Confidence 68999999999999887 667888899999999997754311 100 1245556532 1111 11
Q ss_pred eccCCccccCCCCcchhhhhcccCCCCCCChhHHHHHHHHHHHH---HhCCC---CCCCEEEEEEeCC------------
Q 003222 579 DMDLSDFMDEGKPMSYEKAKKYFDTNPSQKWAAYVAGTILVLMT---ELGVR---FEDSISMLVSSAV------------ 640 (838)
Q Consensus 579 ~~~l~~~~~~~~p~~~~~~~~~~~~~~~~~w~~y~~g~i~~~~~---~~g~~---~~~g~~i~i~s~i------------ 640 (838)
.+.++. +...+..... -....... ..|+..+|....+ ..+.. + .+++|.|.|+.
T Consensus 63 ~y~~~~---~~~~~~~~~~---~~~~~~~~-n~fv~~ai~~~~~y~~~~~~~~~~l-~~~~itI~sd~d~ySq~~~~~~~ 134 (454)
T TIGR01219 63 LYKISL---NHLTLQSVSA---SDSRNPFV-NPFIQYAIAAVHLYFDKESLHKLLL-QGLDITILGDNAYYSQPESLGTL 134 (454)
T ss_pred EEEEec---CCccceeecc---cccCCCCC-ChHHHHHHHHHHHHHHhcccccccc-CceEEEEEecCCcccccchhccc
Confidence 121111 0000000000 00001122 3466666655433 22222 3 58999998877
Q ss_pred -------CC--------CCCCChHHHHHHHHHHHHHHHhCCCC-------------CHHHHHHHHHHHHhhhcCC-CCCh
Q 003222 641 -------PE--------GKGVSSSASVEVASMSAIAAAHGLNI-------------HPRDLALLCQKVENHIVGA-PCGV 691 (838)
Q Consensus 641 -------P~--------g~GLgSSAA~~va~~~al~~l~~~~l-------------~~~ela~~a~~~E~~~~G~-~~G~ 691 (838)
+. +.|||||||+.||++.||..+++..+ +++.+.++||.+|...+|+ .||
T Consensus 135 ~~~~~f~~~~~~~~e~~K~GLGSSAAvtVa~v~ALl~~~~~~~~~~~~~~~~~~~~~~~~i~kLA~~ah~~~qGk~GSG- 213 (454)
T TIGR01219 135 APFASITFNAAEKPEVAKTGLGSSAAMTTALVAALLHYLGVVDLSDPDKEGKFGCSDLDVIHNLAQTAHCLAQGKVGSG- 213 (454)
T ss_pred ccccccccccccCCCccccCccHHHHHHHHHHHHHHHHhCCcccccccccccccccCHHHHHHHHHHHHHhhcCCCCCc-
Confidence 22 68999999999999999999999876 7899999999999999996 688
Q ss_pred hhHHHhhcCCCCeEEEEEecCC---------c------------------eeeeeccCCCeEEEEEeCCCCCcCC
Q 003222 692 MDQMASACGEANKLLAMVCQPA---------E------------------LLGVVEIPSHIRFWGIDSGIRHSVG 739 (838)
Q Consensus 692 mDq~a~~~G~~~~~l~~d~~~~---------~------------------~~~~v~~~~~~~~vi~~s~~~~~~~ 739 (838)
.|.++++||| +++..+.+. . ..+++.+|.++++++.||+.++++.
T Consensus 214 ~DvAaavyGg---i~Y~rfd~~~l~~~~~~~~~~~~~~~L~~~v~~~W~~~i~~l~lP~~l~Llvgdtg~~ssT~ 285 (454)
T TIGR01219 214 FDVSAAVYGS---QRYRRFSPELISFLQVAITGLPLNEVLGTIVKGKWDNKRTEFSLPPLMNLFMGDPGGGSSTP 285 (454)
T ss_pred hhhhhhhcCc---eEEEecChhhhhhhhccccccchhhhHHHHhccCCCCceeeccCCCCCEEEEEcCCCCcCcH
Confidence 6999999999 356665442 0 1235667889999999999997753
|
This enzyme is part of the mevalonate pathway, one of two alternative pathways for the biosynthesis of IPP. In an example of nonorthologous gene displacement, two different types of phosphomevalonate kinase are found - the animal type and this ERG8 type. This model represents plant and fungal forms of the ERG8 type of phosphomevalonate kinase. |
| >PF04101 Glyco_tran_28_C: Glycosyltransferase family 28 C-terminal domain; InterPro: IPR007235 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases | Back alignment and domain information |
|---|
Probab=99.48 E-value=2.7e-14 Score=142.08 Aligned_cols=127 Identities=18% Similarity=0.168 Sum_probs=94.3
Q ss_pred EEEEEcCCCCch--hh----hHHhhCCC--Cc-EEEEeCCCCCC--------CCCCeEECCCCCCHHHHHhhcCEEEecC
Q 003222 225 LLILNFGGQPAG--WK----LKEEYLPS--GW-KCLVCGASDSQ--------LPPNFIKLPKDAYTPDFMAASDCMLGKI 287 (838)
Q Consensus 225 ~Vlvs~Gs~~~~--~~----ll~~l~~~--~~-~~vv~G~~~~~--------lp~nv~~~~~~~~~pdlLa~adl~It~g 287 (838)
+|||++||.+.+ .+ +...+... .+ .++++|..... .+.|+.+++|.++|+++|+.||++||||
T Consensus 1 tilv~gGs~g~~~l~~~v~~~~~~~~~~~~~~~viv~~G~~~~~~~~~~~~~~~~~v~~~~~~~~m~~~m~~aDlvIs~a 80 (167)
T PF04101_consen 1 TILVTGGSQGARDLNRLVLKILELLAEKHKNIQVIVQTGKNNYEELKIKVENFNPNVKVFGFVDNMAELMAAADLVISHA 80 (167)
T ss_dssp -EEEEETTTSHHHHHCCCCCHHHHHHHHHHHCCCCCCCTTCECHHHCCCHCCTTCCCEEECSSSSHHHHHHHHSEEEECS
T ss_pred CEEEEECCCCHHHHHHHHHHHHHHHhhcCCCcEEEEEECCCcHHHHHHHHhccCCcEEEEechhhHHHHHHHcCEEEeCC
Confidence 589999999874 11 11111111 12 44567876421 2368999999999999999999999999
Q ss_pred ChhhHHHHHHcCCcEEEEeCCCCC--ChHHHHHHHHHcCcEEEEecCCCChhhHHHHHHHHhhCCC
Q 003222 288 GYGTVSEALAYKLPFVFVRRDYFN--EEPFLRNMLEFYQGGVEMIRRDLLTGHWKPYLERAISLKP 351 (838)
Q Consensus 288 G~~Tv~Eal~~GvP~l~iP~~~~~--EQ~~Na~~l~~~G~g~~l~~~~~~~~~l~~~l~~ll~~~~ 351 (838)
|.+|++|++++|+|+|++|.+... +|..|++.+++.|+++.+...+.+.+.|.+.|.+++.++.
T Consensus 81 G~~Ti~E~l~~g~P~I~ip~~~~~~~~q~~na~~~~~~g~~~~~~~~~~~~~~L~~~i~~l~~~~~ 146 (167)
T PF04101_consen 81 GAGTIAEALALGKPAIVIPLPGAADNHQEENAKELAKKGAAIMLDESELNPEELAEAIEELLSDPE 146 (167)
T ss_dssp -CHHHHHHHHCT--EEEE--TTT-T-CHHHHHHHHHHCCCCCCSECCC-SCCCHHHHHHCHCCCHH
T ss_pred CccHHHHHHHcCCCeeccCCCCcchHHHHHHHHHHHHcCCccccCcccCCHHHHHHHHHHHHcCcH
Confidence 999999999999999999976533 8999999999999999998888878899999999887653
|
These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC). Structural analysis suggests the C-terminal domain contains the UDP-GlcNAc binding site.; GO: 0016758 transferase activity, transferring hexosyl groups, 0030246 carbohydrate binding, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2KS6_A 2JZC_A 1NLM_B 1F0K_B. |
| >PRK01123 shikimate kinase; Provisional | Back alignment and domain information |
|---|
Probab=99.44 E-value=3.8e-12 Score=137.47 Aligned_cols=123 Identities=16% Similarity=0.136 Sum_probs=97.1
Q ss_pred hHHHHHHHHHHHHHhCCCCCCCEEEEEEeCCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhhhcCC-C
Q 003222 610 AAYVAGTILVLMTELGVRFEDSISMLVSSAVPEGKGVSSSASVEVASMSAIAAAHGLNIHPRDLALLCQKVENHIVGA-P 688 (838)
Q Consensus 610 ~~y~~g~i~~~~~~~g~~~~~g~~i~i~s~iP~g~GLgSSAA~~va~~~al~~l~~~~l~~~ela~~a~~~E~~~~G~-~ 688 (838)
.|++..++..+++..+.. .|+++.+.++||.++|||||||+.+|++.|++.+++.++++++++++|.++|+..++. .
T Consensus 56 ~~~v~~~~~~~~~~~~~~--~~~~i~i~s~IP~~~GLGSSaA~~va~~~a~~~~~~~~l~~~el~~la~~~e~~~~~~~~ 133 (282)
T PRK01123 56 TRLIERCVELVLERFGID--YGATVRTKSEIPLASGLKSSSAAANATVLATLDALGEDLDDLDILRLGVKASRDAGVTVT 133 (282)
T ss_pred chHHHHHHHHHHHHhCCC--CCEEEEEecCCCCCCCccHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhhcccccccc
Confidence 367777777777777764 5999999999999999999999999999999999999999999999999999988764 4
Q ss_pred CChhhHHHhhcCCCCeEEEEEecCCceeeeeccCCCeEEEEEeCCCCCcCC
Q 003222 689 CGVMDQMASACGEANKLLAMVCQPAELLGVVEIPSHIRFWGIDSGIRHSVG 739 (838)
Q Consensus 689 ~G~mDq~a~~~G~~~~~l~~d~~~~~~~~~v~~~~~~~~vi~~s~~~~~~~ 739 (838)
.+.+|++++++||. ++.+........+++ .++.++++.++.+.++.
T Consensus 134 g~~~d~~~~~~GG~---~~~~~~~~~~~~~~~--~~~~~vv~~p~~~~~T~ 179 (282)
T PRK01123 134 GAFDDACASYFGGV---TVTDNREMKLLKRDE--VELDVLVLIPPEGAFSA 179 (282)
T ss_pred CchhHHHHHHhCCE---EEEcCCCceEEEEec--CCcEEEEEECCCCcchh
Confidence 56678899999994 444433222222333 34888998888765543
|
|
| >TIGR01920 Shik_kin_archae shikimate kinase | Back alignment and domain information |
|---|
Probab=99.40 E-value=1.3e-11 Score=131.45 Aligned_cols=118 Identities=18% Similarity=0.208 Sum_probs=93.9
Q ss_pred HHHHHHHHHHHHHhCCCCCCCEEEEEEeCCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhhhcC-CCC
Q 003222 611 AYVAGTILVLMTELGVRFEDSISMLVSSAVPEGKGVSSSASVEVASMSAIAAAHGLNIHPRDLALLCQKVENHIVG-APC 689 (838)
Q Consensus 611 ~y~~g~i~~~~~~~g~~~~~g~~i~i~s~iP~g~GLgSSAA~~va~~~al~~l~~~~l~~~ela~~a~~~E~~~~G-~~~ 689 (838)
|++..++..+.+..+.. .|+++.+.++||.++|||||||+.+|++.|++.+++.++++++++++|+++|+..++ ..+
T Consensus 46 n~i~~~~~~~~~~~~~~--~g~~i~i~s~iP~~~GLGSSaA~~~a~~~al~~~~~~~l~~~~l~~la~~~e~~~~~~~~~ 123 (261)
T TIGR01920 46 RLIERILTAIRSKFGIV--DGLEVEVESEIPAGSGLKSSSALVNALVEAVLKAKGVEIDDIDILRLGARLSKDAGLSVTG 123 (261)
T ss_pred HHHHHHHHHHHHhcCCC--CCEEEEEecCCCCCCCcchHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhhCCCCCC
Confidence 67777777777666643 699999999999999999999999999999999999999999999999999998764 457
Q ss_pred ChhhHHHhhcCCCCeEEEEEecCCceeeeeccCCCeEEEEEeCCC
Q 003222 690 GVMDQMASACGEANKLLAMVCQPAELLGVVEIPSHIRFWGIDSGI 734 (838)
Q Consensus 690 G~mDq~a~~~G~~~~~l~~d~~~~~~~~~v~~~~~~~~vi~~s~~ 734 (838)
|.+|++++++||. ++.+.++....+..++| +..++++..+.
T Consensus 124 ~~~D~~~~~~gG~---~~~~~~~~~~~~~~~~~-~~~~vv~~p~~ 164 (261)
T TIGR01920 124 AFDDAAASYLGGI---VITDNRRMKILKRDKLE-GCTAAVLVPKE 164 (261)
T ss_pred cHHHHHHHHhCCE---EEEeCCCceEEEecCCC-CceEEEEECCC
Confidence 7789999999994 55555444333344444 34556666555
|
This model represents the shikimate kinase (SK) gene found in archaea which is only distantly related to homoserine kinase (thrB) and not atr all to the bacterial SK enzyme. The SK from M. janaschii has been overexpressed in E. coli and characterized. SK catalyzes the fifth step of the biosynthesis of chorismate from D-erythrose-4-phosphate and phosphoenolpyruvate. |
| >TIGR03492 conserved hypothetical protein | Back alignment and domain information |
|---|
Probab=99.39 E-value=1.7e-11 Score=138.82 Aligned_cols=321 Identities=14% Similarity=0.146 Sum_probs=172.8
Q ss_pred EeecCCCcccHHHHHHHHHHHHH--CCCeEE---EEeCCCCcccccccCCCceeeeeeccCCCcccccccc-cChHHHHH
Q 003222 20 YYVTGHGFGHATRVVEVVRNLIS--AGHDVH---VVTGAPDFVFTSEIQSPRLFIRKVLLDCGAVQADALT-VDRLASLE 93 (838)
Q Consensus 20 ~~v~g~G~GHv~r~laLA~~L~~--~Gh~V~---~v~~~~~~~~~~~i~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~l~ 93 (838)
+.+.|| |-=.-+++||++|++ .|++|. +++....+. ...++..+ .+.. ...| ++. ......+.
T Consensus 2 ~~sngh--ged~~a~ai~~~l~~~~~~~~v~~~p~vG~~~~~e-~~~ip~~g-~~~~--~~sg-----g~~~~~~~~~~~ 70 (396)
T TIGR03492 2 FLSNGH--GEDLIAARIAKALLQLSPDLNLEALPLVGEGRAYQ-NLGIPIIG-PTKE--LPSG-----GFSYQSLRGLLR 70 (396)
T ss_pred cCCCCc--hHHHHHHHHHHHHHhhCCCCCeEEeCcccCCHHHh-hCCCceeC-CCCC--CCCC-----CccCCCHHHHHH
Confidence 345555 555668899999998 599999 887654321 22221101 1111 1111 111 11112222
Q ss_pred HHHHHhhccHHHHHHHHHHHHhcC--CCcEEEECCCchHHHHHHHhCCcEEEE----ecCchhH-----HHHhhhhhccc
Q 003222 94 KYSETAVAPRKSILKDEVEWLNSI--KADLVVSDVVPVACRAAADAGIRSVCV----TNFSWDF-----IYAEYVMAAGH 162 (838)
Q Consensus 94 ~~~~~~~~~~~~~l~~~~~~L~~~--kPDlVVsD~~~~~~~aA~~lgIP~V~i----s~~~~~~-----i~~~~~~~~~~ 162 (838)
.+.. ..-..+.+....++++ +||+|++.-.+.++.+|...++|++.+ +|+.|.. ..+.|..-.|.
T Consensus 71 ~~~~----gl~~~~~~~~~~~~~~~~~p~~v~~~Gg~v~~~aA~~~~~p~~~~~~~esn~~~~~~~~~~~~~~~~~~~G~ 146 (396)
T TIGR03492 71 DLRA----GLVGLTLGQWRALRKWAKKGDLIVAVGDIVPLLFAWLSGKPYAFVGTAKSDYYWESGPRRSPSDEYHRLEGS 146 (396)
T ss_pred HHHh----hHHHHHHHHHHHHHHHhhcCCEEEEECcHHHHHHHHHcCCCceEEEeeccceeecCCCCCccchhhhccCCC
Confidence 2222 1122334456678888 999999877666888999999999874 4444321 00111111111
Q ss_pred chHHH-HHHHHhhccccceEEecCCCCCCCCC----Cc--eeecCcccccCCcChHHHHHHhCCCCCCcEEEEEcCCCCc
Q 003222 163 HHRSI-VWQIAEDYSHCEFLIRLPGYCPMPAF----RD--VIDVPLVVRRLHKSRKEVRKELGIEDDVKLLILNFGGQPA 235 (838)
Q Consensus 163 ~~~~i-~~~l~~~y~~~d~ll~~~~~~~~p~~----~~--v~~ip~~~~~~~~~~~~~r~~l~~~~~~~~Vlvs~Gs~~~ 235 (838)
.+.++ .+.+...+ ++.++ .++......+ .+ +++.|....-....+ + +++++.++|++..||.+.
T Consensus 147 ~~~p~e~n~l~~~~--a~~v~-~~~~~t~~~l~~~g~k~~~vGnPv~d~l~~~~~----~--~l~~~~~~lllLpGSR~a 217 (396)
T TIGR03492 147 LYLPWERWLMRSRR--CLAVF-VRDRLTARDLRRQGVRASYLGNPMMDGLEPPER----K--PLLTGRFRIALLPGSRPP 217 (396)
T ss_pred ccCHHHHHHhhchh--hCEEe-CCCHHHHHHHHHCCCeEEEeCcCHHhcCccccc----c--ccCCCCCEEEEECCCCHH
Confidence 11111 01122111 23332 1111100000 12 344444332111111 1 455567889999999876
Q ss_pred h-h----hhHH---hhCC-CCcEEE-Ee-CCCCCC----------CC--------------CCeEECCCCCCHHHHHhhc
Q 003222 236 G-W----KLKE---EYLP-SGWKCL-VC-GASDSQ----------LP--------------PNFIKLPKDAYTPDFMAAS 280 (838)
Q Consensus 236 ~-~----~ll~---~l~~-~~~~~v-v~-G~~~~~----------lp--------------~nv~~~~~~~~~pdlLa~a 280 (838)
. . .+++ .+.. ++..++ .+ |..... +. +++.+..|..+++++|+.|
T Consensus 218 e~~~~lp~~l~al~~L~~~~~~~~v~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~A 297 (396)
T TIGR03492 218 EAYRNLKLLLRALEALPDSQPFVFLAAIVPSLSLEKLQAILEDLGWQLEGSSEDQTSLFQKGTLEVLLGRGAFAEILHWA 297 (396)
T ss_pred HHHccHHHHHHHHHHHhhCCCeEEEEEeCCCCCHHHHHHHHHhcCceecCCccccchhhccCceEEEechHhHHHHHHhC
Confidence 3 1 1222 2321 345444 33 432211 11 1355556666789999999
Q ss_pred CEEEecCChhhHHHHHHcCCcEEEEeCCCCCChHHHHHHHHHc----CcEEEEecCCCChhhHHHHHHHHhhCCCCcc--
Q 003222 281 DCMLGKIGYGTVSEALAYKLPFVFVRRDYFNEEPFLRNMLEFY----QGGVEMIRRDLLTGHWKPYLERAISLKPCYE-- 354 (838)
Q Consensus 281 dl~It~gG~~Tv~Eal~~GvP~l~iP~~~~~EQ~~Na~~l~~~----G~g~~l~~~~~~~~~l~~~l~~ll~~~~~~~-- 354 (838)
|++||.+|..| .|++++|+|+|++|.+ ..| .|+..+++. |.++.+...+ .+.+.+.+.++++++..+.
T Consensus 298 DlvI~rSGt~T-~E~a~lg~P~Ilip~~--~~q-~na~~~~~~~~l~g~~~~l~~~~--~~~l~~~l~~ll~d~~~~~~~ 371 (396)
T TIGR03492 298 DLGIAMAGTAT-EQAVGLGKPVIQLPGK--GPQ-FTYGFAEAQSRLLGGSVFLASKN--PEQAAQVVRQLLADPELLERC 371 (396)
T ss_pred CEEEECcCHHH-HHHHHhCCCEEEEeCC--CCH-HHHHHHHhhHhhcCCEEecCCCC--HHHHHHHHHHHHcCHHHHHHH
Confidence 99999999655 9999999999999954 346 499888774 7777765444 3788889999887653210
Q ss_pred --------CCCCHHHHHHHHHHHH
Q 003222 355 --------GGINGGEVAAHILQET 370 (838)
Q Consensus 355 --------~~~~g~~~~a~~i~~~ 370 (838)
..+++++++++.|.++
T Consensus 372 ~~~~~~~lg~~~a~~~ia~~i~~~ 395 (396)
T TIGR03492 372 RRNGQERMGPPGASARIAESILKQ 395 (396)
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHh
Confidence 3456666666666543
|
This protein family is restricted to the Cyanobacteria, in one or two copies, save for instances in the genus Deinococcus. This protein shows some sequence similarity, especially toward the C-terminus, to lipid-A-disaccharide synthase (TIGR00215 or pfam02684). The function is unknown. |
| >PRK00343 ipk 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional | Back alignment and domain information |
|---|
Probab=99.32 E-value=2.3e-11 Score=130.34 Aligned_cols=167 Identities=14% Similarity=0.188 Sum_probs=116.6
Q ss_pred EEEEccccccccccccc------cCCCeeeccccccceEEEEEEcCCccchhhhhhhhccCCCCCCCCCeEEEEeccccc
Q 003222 498 FVARAPGRLDVMGGIAD------YSGSLVLQMPIREACHVALQKISPSKQRLWKHALARHNDKGQGPMPVLQIVSYGSEL 571 (838)
Q Consensus 498 ~~~~APGRv~L~GeH~D------y~gg~vl~~ai~~~~~v~~~~~~d~~~~l~~~~~~~~~~~~~~~~~~i~i~s~~~~~ 571 (838)
+.++||++|||++ |.- |+.-..+.++|+++..+.+.+.+++. +++.+
T Consensus 7 ~~~~apaKiNL~L-~v~~~r~dGyH~l~s~~~~i~l~D~v~i~~~~~~~---------------------~~i~~----- 59 (271)
T PRK00343 7 LDWPAPAKLNLFL-HITGRRADGYHELQTLFQFLDWGDTLHFEVRDDGE---------------------IRLLT----- 59 (271)
T ss_pred EEEeeeeeEEEEe-ecCCcCCCCCCeeeEEEEEcccceEEEEEECCCCc---------------------EEEeC-----
Confidence 4568999999999 421 22333477899998888887765421 22221
Q ss_pred CCCCCceeccCCccccCCCCcchhhhhcccCCCCCCChhHHHHHHHHHHHHHhCCCCCCCEEEEEEeCCCCCCCCChHHH
Q 003222 572 SNRGPTFDMDLSDFMDEGKPMSYEKAKKYFDTNPSQKWAAYVAGTILVLMTELGVRFEDSISMLVSSAVPEGKGVSSSAS 651 (838)
Q Consensus 572 ~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~~~~~~w~~y~~g~i~~~~~~~g~~~~~g~~i~i~s~iP~g~GLgSSAA 651 (838)
+..+ -..|.||+..++..+.+..+.. .|+++.|.++||.|+|||||||
T Consensus 60 ---------~~~~---------------------~~~~~N~v~~a~~~l~~~~~~~--~~~~i~i~k~IP~gaGLGssSs 107 (271)
T PRK00343 60 ---------PIPG---------------------VPEEDNLIVRAARLLQKATGTP--LGADISLDKRLPMGGGLGGGSS 107 (271)
T ss_pred ---------CCCC---------------------CCCcccHHHHHHHHHHHHhCCC--CCeEEEEEcCCCCcCCCCcchH
Confidence 0000 0246899999988887666653 5999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhhhcCCCCChhhHHHhhcCCCCeEEEEEecCCceeeeeccCCCeEEEEEe
Q 003222 652 VEVASMSAIAAAHGLNIHPRDLALLCQKVENHIVGAPCGVMDQMASACGEANKLLAMVCQPAELLGVVEIPSHIRFWGID 731 (838)
Q Consensus 652 ~~va~~~al~~l~~~~l~~~ela~~a~~~E~~~~G~~~G~mDq~a~~~G~~~~~l~~d~~~~~~~~~v~~~~~~~~vi~~ 731 (838)
..+|++.+++++++.++++++++++|++.|- | .++.++|. ..+.. ...+...+++.| ...+++++
T Consensus 108 ~aaa~l~al~~l~~~~ls~~el~~la~~iga----------D-vp~~l~g~--~~~~~-g~g~~~~~l~~~-~~~~vl~~ 172 (271)
T PRK00343 108 DAATTLVALNRLWQLGLSRDELAELGLKLGA----------D-VPVFVRGH--AAFAE-GIGEILTPVDLP-EKWYLVVK 172 (271)
T ss_pred HHHHHHHHHHHHhCCCcCHHHHHHHHHHhCC----------C-ceEEecCC--cEEEE-ecCCEEEECCCC-CcEEEEEe
Confidence 9999999999999999999999999987753 4 22334442 22322 223333455544 34468888
Q ss_pred CCCCCcC
Q 003222 732 SGIRHSV 738 (838)
Q Consensus 732 s~~~~~~ 738 (838)
++...++
T Consensus 173 p~~~~sT 179 (271)
T PRK00343 173 PGVHIST 179 (271)
T ss_pred CCCCcCh
Confidence 8887764
|
|
| >PRK14611 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional | Back alignment and domain information |
|---|
Probab=99.31 E-value=3.1e-11 Score=129.91 Aligned_cols=114 Identities=15% Similarity=0.142 Sum_probs=88.6
Q ss_pred hhHHHHHHHHHHHHHhCCCCCCCEEEEEEeCCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhhhcCCC
Q 003222 609 WAAYVAGTILVLMTELGVRFEDSISMLVSSAVPEGKGVSSSASVEVASMSAIAAAHGLNIHPRDLALLCQKVENHIVGAP 688 (838)
Q Consensus 609 w~~y~~g~i~~~~~~~g~~~~~g~~i~i~s~iP~g~GLgSSAA~~va~~~al~~l~~~~l~~~ela~~a~~~E~~~~G~~ 688 (838)
+.|++..++..+.+..|.. .|++|.+.++||.++|||||||..+|++.|+++++|.++++.+++++|..+|.
T Consensus 60 ~~n~v~~a~~~~~~~~g~~--~~~~i~i~k~IP~~~GLGSSsA~aaA~l~al~~~~~~~l~~~~l~~la~~i~~------ 131 (275)
T PRK14611 60 EENIVYKALRLFERYTGID--INYSIFIEKNIPVGAGLGGGSSNAAVVLKYLNELLGNPLSEEELFELASSISA------ 131 (275)
T ss_pred cccHHHHHHHHHHHHhCCC--CCeEEEEEeCCCCcCCccHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCC------
Confidence 4788888887776666654 58999999999999999999999999999999999999999999999998773
Q ss_pred CChhhHHHhhcCCCCeEEEEEecCCceeeeeccCCCeEEEEEeCCCCCcC
Q 003222 689 CGVMDQMASACGEANKLLAMVCQPAELLGVVEIPSHIRFWGIDSGIRHSV 738 (838)
Q Consensus 689 ~G~mDq~a~~~G~~~~~l~~d~~~~~~~~~v~~~~~~~~vi~~s~~~~~~ 738 (838)
|...+++||. .+.... .+...+++.+....++++++++..++
T Consensus 132 ----D~~~~~~Gg~---~~~~~~-g~~~~~~~~~~~~~~vv~~p~~~~sT 173 (275)
T PRK14611 132 ----DAPFFLKGGF---ALGRGI-GDKLEFLEKPISREITLVYPNIKSST 173 (275)
T ss_pred ----CCCeeecCCe---EEEecc-CceeEECCcCCCcEEEEEeCCCCCCh
Confidence 5444678873 343332 22224444434456899999988875
|
|
| >PLN02871 UDP-sulfoquinovose:DAG sulfoquinovosyltransferase | Back alignment and domain information |
|---|
Probab=99.26 E-value=1.9e-09 Score=125.19 Aligned_cols=308 Identities=15% Similarity=0.033 Sum_probs=161.9
Q ss_pred CceEEEEEeecCCC----cccHHHHHHHHHHHHHCCCeEEEEeCCCCcccccccCCCceeeeeeccCCCcccccccccCh
Q 003222 13 SKHLVFAYYVTGHG----FGHATRVVEVVRNLISAGHDVHVVTGAPDFVFTSEIQSPRLFIRKVLLDCGAVQADALTVDR 88 (838)
Q Consensus 13 m~~~~Il~~v~g~G----~GHv~r~laLA~~L~~~Gh~V~~v~~~~~~~~~~~i~~~~~~~~~~~~~~g~~~~~~~~~~~ 88 (838)
+++|+|++++.... .|=..+...++++|.++||+|++++...... .. . .++.+... ...... ... .
T Consensus 56 ~~~mrI~~~~~~~~~~~~gG~~~~~~~l~~~L~~~G~eV~vlt~~~~~~-~~-~--~g~~v~~~-~~~~~~---~~~-~- 125 (465)
T PLN02871 56 SRPRRIALFVEPSPFSYVSGYKNRFQNFIRYLREMGDEVLVVTTDEGVP-QE-F--HGAKVIGS-WSFPCP---FYQ-K- 125 (465)
T ss_pred CCCceEEEEECCcCCcccccHHHHHHHHHHHHHHCCCeEEEEecCCCCC-cc-c--cCceeecc-CCcCCc---cCC-C-
Confidence 67788887753221 3445788999999999999999998754211 00 0 11111100 000000 000 0
Q ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHhcCCCcEEEECCCc----hHHHHHHHhCCcEEEEecCchhHHHHhhhhhcccch
Q 003222 89 LASLEKYSETAVAPRKSILKDEVEWLNSIKADLVVSDVVP----VACRAAADAGIRSVCVTNFSWDFIYAEYVMAAGHHH 164 (838)
Q Consensus 89 ~~~l~~~~~~~~~~~~~~l~~~~~~L~~~kPDlVVsD~~~----~~~~aA~~lgIP~V~is~~~~~~i~~~~~~~~~~~~ 164 (838)
. ...+. ......+++++.+||+|++..+. .+..+++..++|+|...+..+......+.. ....
T Consensus 126 ---~--~~~~~------~~~~l~~~i~~~kpDiIh~~~~~~~~~~~~~~ak~~~ip~V~~~h~~~~~~~~~~~~--~~~~ 192 (465)
T PLN02871 126 ---V--PLSLA------LSPRIISEVARFKPDLIHASSPGIMVFGALFYAKLLCVPLVMSYHTHVPVYIPRYTF--SWLV 192 (465)
T ss_pred ---c--eeecc------CCHHHHHHHHhCCCCEEEECCCchhHHHHHHHHHHhCCCEEEEEecCchhhhhcccc--hhhH
Confidence 0 00000 01123556788999999876422 234567788999886422111110000000 0000
Q ss_pred HHHHHHHHhhccccceEEecCC---------CCCCCCCCceeecCccccc--CCcChHHHHHHhCCCCCCcEEEEEcCCC
Q 003222 165 RSIVWQIAEDYSHCEFLIRLPG---------YCPMPAFRDVIDVPLVVRR--LHKSRKEVRKELGIEDDVKLLILNFGGQ 233 (838)
Q Consensus 165 ~~i~~~l~~~y~~~d~ll~~~~---------~~~~p~~~~v~~ip~~~~~--~~~~~~~~r~~l~~~~~~~~Vlvs~Gs~ 233 (838)
..+.......+..++.++.... ....+....+++.|+.... +...+.+.++.+....+...++++.|..
T Consensus 193 ~~~~~~~r~~~~~ad~ii~~S~~~~~~l~~~~~~~~~kv~vi~nGvd~~~f~p~~~~~~~~~~~~~~~~~~~~i~~vGrl 272 (465)
T PLN02871 193 KPMWDIIRFLHRAADLTLVTSPALGKELEAAGVTAANRIRVWNKGVDSESFHPRFRSEEMRARLSGGEPEKPLIVYVGRL 272 (465)
T ss_pred HHHHHHHHHHHhhCCEEEECCHHHHHHHHHcCCCCcCeEEEeCCccCccccCCccccHHHHHHhcCCCCCCeEEEEeCCC
Confidence 1111111112233443332111 0000111223344443221 2223344555553222233456777887
Q ss_pred Cch--hh-hHHhhC-CCCcEEEEeCCCCCC-------CCCCeEECCCC--CCHHHHHhhcCEEEecCC----hhhHHHHH
Q 003222 234 PAG--WK-LKEEYL-PSGWKCLVCGASDSQ-------LPPNFIKLPKD--AYTPDFMAASDCMLGKIG----YGTVSEAL 296 (838)
Q Consensus 234 ~~~--~~-ll~~l~-~~~~~~vv~G~~~~~-------lp~nv~~~~~~--~~~pdlLa~adl~It~gG----~~Tv~Eal 296 (838)
+.. .+ +++.+. .+++.++++|..... ...||++++++ +.++++|+.+|+||.... ..++.|||
T Consensus 273 ~~~K~~~~li~a~~~~~~~~l~ivG~G~~~~~l~~~~~~~~V~f~G~v~~~ev~~~~~~aDv~V~pS~~E~~g~~vlEAm 352 (465)
T PLN02871 273 GAEKNLDFLKRVMERLPGARLAFVGDGPYREELEKMFAGTPTVFTGMLQGDELSQAYASGDVFVMPSESETLGFVVLEAM 352 (465)
T ss_pred chhhhHHHHHHHHHhCCCcEEEEEeCChHHHHHHHHhccCCeEEeccCCHHHHHHHHHHCCEEEECCcccccCcHHHHHH
Confidence 753 22 222221 146788888865421 13578888987 467899999999996442 34789999
Q ss_pred HcCCcEEEEeCCCCCChHHHHHHHHH---cCcEEEEecCCCChhhHHHHHHHHhhCCC
Q 003222 297 AYKLPFVFVRRDYFNEEPFLRNMLEF---YQGGVEMIRRDLLTGHWKPYLERAISLKP 351 (838)
Q Consensus 297 ~~GvP~l~iP~~~~~EQ~~Na~~l~~---~G~g~~l~~~~~~~~~l~~~l~~ll~~~~ 351 (838)
++|+|+|+....+. .+.++. .+.|.+++..+ ++.+.++|.++++++.
T Consensus 353 A~G~PVI~s~~gg~------~eiv~~~~~~~~G~lv~~~d--~~~la~~i~~ll~~~~ 402 (465)
T PLN02871 353 ASGVPVVAARAGGI------PDIIPPDQEGKTGFLYTPGD--VDDCVEKLETLLADPE 402 (465)
T ss_pred HcCCCEEEcCCCCc------HhhhhcCCCCCceEEeCCCC--HHHHHHHHHHHHhCHH
Confidence 99999999874332 233555 67898887766 4688999999987653
|
|
| >PLN02451 homoserine kinase | Back alignment and domain information |
|---|
Probab=99.24 E-value=6.5e-11 Score=131.91 Aligned_cols=120 Identities=22% Similarity=0.311 Sum_probs=94.9
Q ss_pred HHHHHHHHHHHHHhCCCCCCCEEEEEEeCCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhhhcCCCCC
Q 003222 611 AYVAGTILVLMTELGVRFEDSISMLVSSAVPEGKGVSSSASVEVASMSAIAAAHGLNIHPRDLALLCQKVENHIVGAPCG 690 (838)
Q Consensus 611 ~y~~g~i~~~~~~~g~~~~~g~~i~i~s~iP~g~GLgSSAA~~va~~~al~~l~~~~l~~~ela~~a~~~E~~~~G~~~G 690 (838)
|.+.-++..+++..|... .|++|.|.++||.|+|||||||.++|++.|++.++|.++++++++++|.++|..++|..
T Consensus 115 Nlv~~a~~~~~~~~g~~~-~gv~I~i~k~IP~g~GLGSSaA~avA~l~aln~l~g~~ls~~eL~~la~~~E~~v~g~h-- 191 (370)
T PLN02451 115 NCAGIAAIATMKLLGIRS-VGLSLSLHKGLPLGSGLGSSAASAAAAAVAVNELFGSPLGKDDLVLAGLESEAKVSGYH-- 191 (370)
T ss_pred CcHHHHHHHHHHHcCCCC-CCEEEEEeCCCCCCCCccHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhchhcCCC--
Confidence 455444566677777643 69999999999999999999999999999999999999999999999999999988852
Q ss_pred hhhHHH-hhcCCCCeEEEE-EecCCceeeeeccC--CCeEEEEEeCCCCCcC
Q 003222 691 VMDQMA-SACGEANKLLAM-VCQPAELLGVVEIP--SHIRFWGIDSGIRHSV 738 (838)
Q Consensus 691 ~mDq~a-~~~G~~~~~l~~-d~~~~~~~~~v~~~--~~~~~vi~~s~~~~~~ 738 (838)
+||++ +++||. ++. .+.+.+. .++++| .++.++++..+...++
T Consensus 192 -~Dnva~a~~GG~---v~~~~~~~~~~-~~~~~p~~~~~~~Vlv~P~~~~sT 238 (370)
T PLN02451 192 -ADNIAPALMGGF---VLIRSYEPLHL-IPLRFPSAKDLFFVLVSPDFEAPT 238 (370)
T ss_pred -ccchhHhhcCCE---EEEEecCCCeE-EEeecCCCCCeEEEEEcCCCCccH
Confidence 79986 689984 333 2333333 455554 5788899988877654
|
|
| >cd03814 GT1_like_2 This family is most closely related to the GT1 family of glycosyltransferases | Back alignment and domain information |
|---|
Probab=99.22 E-value=2.2e-09 Score=118.59 Aligned_cols=289 Identities=16% Similarity=0.111 Sum_probs=153.9
Q ss_pred cccHHHHHHHHHHHHHCCCeEEEEeCCCCcccccccCCCceeeeeeccCCCcccccccccChHHHHHHHHHHhhccHHHH
Q 003222 27 FGHATRVVEVVRNLISAGHDVHVVTGAPDFVFTSEIQSPRLFIRKVLLDCGAVQADALTVDRLASLEKYSETAVAPRKSI 106 (838)
Q Consensus 27 ~GHv~r~laLA~~L~~~Gh~V~~v~~~~~~~~~~~i~~~~~~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 106 (838)
.|+..+...++++|.++||+|++++........... ....++.. ..... ...... . ..
T Consensus 14 ~G~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~--~~~~~~~~--~~~~~--~~~~~~---------------~-~~ 71 (364)
T cd03814 14 NGVVRTLQRLVEHLRARGHEVLVIAPGPFRESEGPA--RVVPVPSV--PLPGY--PEIRLA---------------L-PP 71 (364)
T ss_pred cceehHHHHHHHHHHHCCCEEEEEeCCchhhccCCC--Cceeeccc--ccCcc--cceEec---------------c-cc
Confidence 689999999999999999999999875321111000 01111110 00000 000000 0 00
Q ss_pred HHHHHHHHhcCCCcEEEECCC----chHHHHHHHhCCcEEEEecCchhHHHHhhhhhcccchHHHHHH-HHhhccccceE
Q 003222 107 LKDEVEWLNSIKADLVVSDVV----PVACRAAADAGIRSVCVTNFSWDFIYAEYVMAAGHHHRSIVWQ-IAEDYSHCEFL 181 (838)
Q Consensus 107 l~~~~~~L~~~kPDlVVsD~~----~~~~~aA~~lgIP~V~is~~~~~~i~~~~~~~~~~~~~~i~~~-l~~~y~~~d~l 181 (838)
.......+++.+||+|+.+.. ..+..+++..++|.+..-+..|......+.. ......... ....+..++.+
T Consensus 72 ~~~~~~~~~~~~pdii~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~d~i 148 (364)
T cd03814 72 RRRVRRLLDAFAPDVVHIATPGPLGLAALRAARRLGIPVVTSYHTDFPEYLRYYGL---GPLSWLAWAYLRWFHNRADRV 148 (364)
T ss_pred hhhHHHHHHhcCCCEEEEeccchhhHHHHHHHHHcCCCEEEEEecChHHHhhhccc---chHhHhhHHHHHHHHHhCCEE
Confidence 112244568899999987642 2345566778999876533222211111100 001111011 11223334443
Q ss_pred EecCCCC----CCCCCCc--eeecCcccc--cCCcChHHHHHHhCCCCCCcEEEEEcCCCCch--h-hhHH---hhCC-C
Q 003222 182 IRLPGYC----PMPAFRD--VIDVPLVVR--RLHKSRKEVRKELGIEDDVKLLILNFGGQPAG--W-KLKE---EYLP-S 246 (838)
Q Consensus 182 l~~~~~~----~~p~~~~--v~~ip~~~~--~~~~~~~~~r~~l~~~~~~~~Vlvs~Gs~~~~--~-~ll~---~l~~-~ 246 (838)
+...... ......+ +.+.|.... .+...+...++.++ ...+.++++.|+.... . .+++ .+.. +
T Consensus 149 ~~~s~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~--~~~~~~i~~~G~~~~~k~~~~~i~~~~~l~~~~ 226 (364)
T cd03814 149 LVPSPSLADELRARGFRRVRLWPRGVDTELFHPRRRDEALRARLG--PPDRPVLLYVGRLAPEKNLEALLDADLPLRRRP 226 (364)
T ss_pred EeCCHHHHHHHhccCCCceeecCCCccccccCcccccHHHHHHhC--CCCCeEEEEEeccccccCHHHHHHHHHHhhhcC
Confidence 3211100 0000011 222222111 11222233344444 2344567788876542 2 2222 2322 3
Q ss_pred CcEEEEeCCCCCC-----CCCCeEECCCC--CCHHHHHhhcCEEEecCC----hhhHHHHHHcCCcEEEEeCCCCCChHH
Q 003222 247 GWKCLVCGASDSQ-----LPPNFIKLPKD--AYTPDFMAASDCMLGKIG----YGTVSEALAYKLPFVFVRRDYFNEEPF 315 (838)
Q Consensus 247 ~~~~vv~G~~~~~-----lp~nv~~~~~~--~~~pdlLa~adl~It~gG----~~Tv~Eal~~GvP~l~iP~~~~~EQ~~ 315 (838)
++.++++|..... ...||.+.++. ..++++|+.||++|..+. .+++.||+++|+|+|+.+...
T Consensus 227 ~~~l~i~G~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~~d~~l~~s~~e~~~~~~lEa~a~g~PvI~~~~~~------ 300 (364)
T cd03814 227 PVRLVIVGDGPARARLEARYPNVHFLGFLDGEELAAAYASADVFVFPSRTETFGLVVLEAMASGLPVVAPDAGG------ 300 (364)
T ss_pred CceEEEEeCCchHHHHhccCCcEEEEeccCHHHHHHHHHhCCEEEECcccccCCcHHHHHHHcCCCEEEcCCCC------
Confidence 6788888865432 46789988864 356789999999997543 368999999999999987543
Q ss_pred HHHHHHHcCcEEEEecCCCChhhHHHHHHHHhhCC
Q 003222 316 LRNMLEFYQGGVEMIRRDLLTGHWKPYLERAISLK 350 (838)
Q Consensus 316 Na~~l~~~G~g~~l~~~~~~~~~l~~~l~~ll~~~ 350 (838)
+.+.++..+.|..++..+ .+.+..+|.+++.++
T Consensus 301 ~~~~i~~~~~g~~~~~~~--~~~l~~~i~~l~~~~ 333 (364)
T cd03814 301 PADIVTDGENGLLVEPGD--AEAFAAALAALLADP 333 (364)
T ss_pred chhhhcCCcceEEcCCCC--HHHHHHHHHHHHcCH
Confidence 344566678898887655 456889999998766
|
Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog |
| >KOG0631 consensus Galactokinase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.19 E-value=6.4e-14 Score=153.35 Aligned_cols=427 Identities=34% Similarity=0.393 Sum_probs=276.6
Q ss_pred hcCCCcEEEECCCchHHHHHHHhCCcEEEEecCchhHHHHhhhhhcccchHHHHHHHHhhccccceEEecCCCCCCCCCC
Q 003222 115 NSIKADLVVSDVVPVACRAAADAGIRSVCVTNFSWDFIYAEYVMAAGHHHRSIVWQIAEDYSHCEFLIRLPGYCPMPAFR 194 (838)
Q Consensus 115 ~~~kPDlVVsD~~~~~~~aA~~lgIP~V~is~~~~~~i~~~~~~~~~~~~~~i~~~l~~~y~~~d~ll~~~~~~~~p~~~ 194 (838)
..+...-+..|..+..+.+....++|.++++|+.|.+++..|.. ..+.+++...+.+....+. ++++.+.
T Consensus 58 ~~~sVlpmaid~~~l~~~~~~~d~~~sl~~tN~~~~f~~~~~~~------p~~~~~I~~~~~~w~ny~~----C~~~g~h 127 (489)
T KOG0631|consen 58 CGYSVLPMAIDVDTLIAVAPSDDGIVSLRLTNFNPDFIYFKYPL------PSIVWQIDPDVSKWENYFY----CGMKGFH 127 (489)
T ss_pred cCceeeeEEeeeeeEEEEEEcCCCceeEEEecCCCccceeeccC------CchhcccCCCccchhhhhc----cchHHHH
Confidence 33344444444444444444566899999999999866655432 1134455444444333222 2333322
Q ss_pred ceeecCcccccCCcChHHHHHHhCCCCCCcEEEEEcCCCCchhhhHHhhCCCCcEEEEeCCCCCC-CCCCeEECCCCCCH
Q 003222 195 DVIDVPLVVRRLHKSRKEVRKELGIEDDVKLLILNFGGQPAGWKLKEEYLPSGWKCLVCGASDSQ-LPPNFIKLPKDAYT 273 (838)
Q Consensus 195 ~v~~ip~~~~~~~~~~~~~r~~l~~~~~~~~Vlvs~Gs~~~~~~ll~~l~~~~~~~vv~G~~~~~-lp~nv~~~~~~~~~ 273 (838)
++. .++..+... ..++.++.+|++..++.+.+. ..|.+.+++..... +++|+...+..-..
T Consensus 128 ~~~-----------~~~~~~~~~----~vGl~~l~~g~vPtgsgLsSs---aa~~c~a~lA~~~~~~gpn~~~~kkd~~~ 189 (489)
T KOG0631|consen 128 EYI-----------KRKPVRFEP----PVGLSILNDGSVPTGSGLSSS---AAWLCAAALATLKLNLGPNFIISKKDLAT 189 (489)
T ss_pred HHH-----------hccccccCC----CcceEEEecCCCCCCCCcchh---HHHHHHHHHHHHHHhcCCCcccchhhhhc
Confidence 221 000111111 146778888888876444331 12333333322111 46675544332223
Q ss_pred HHHHhhcCEEEecCChhhHHHHHHcCCcEEEEeCCCCCChHHHHHHHHHcCcEEEEecCCCChhhHHHHHHHHhhCCCCc
Q 003222 274 PDFMAASDCMLGKIGYGTVSEALAYKLPFVFVRRDYFNEEPFLRNMLEFYQGGVEMIRRDLLTGHWKPYLERAISLKPCY 353 (838)
Q Consensus 274 pdlLa~adl~It~gG~~Tv~Eal~~GvP~l~iP~~~~~EQ~~Na~~l~~~G~g~~l~~~~~~~~~l~~~l~~ll~~~~~~ 353 (838)
++..++.++-+..||+.+..|+++...+.+.+. +. +.+.-+.+++....|+.+...++...++.....+..+.+ .+
T Consensus 190 i~~~ae~~~G~~~gGmdq~asvl~~~~~Al~v~-~~--~~Pf~~~~lk~~~~~vfvI~~~L~~~nk~~~a~tnynlR-v~ 265 (489)
T KOG0631|consen 190 ITVVAESYIGLNSGGMDQAASVLAEKGHALLVD-PY--FTPFRRSMLKLPDGGVFVIANSLVESNKAETAETNYNLR-VV 265 (489)
T ss_pred ceEEeecccCcCCCcHHHHHHHHHhcCceEEec-cc--CCccccccccCCCCceEEEechhhhhcchhhhhhhhhce-eE
Confidence 466678899999999999999999999999997 22 446778889999999999988987777766666655444 55
Q ss_pred cCCCCHHHHHHHHHHHHhccCCCccCCCchhHhhHHHHHhccccccCCCccccccccccccccccccccCCCCCCCCCCC
Q 003222 354 EGGINGGEVAAHILQETAIGKNYASDKLSGARRLRDAIIFGYELQRVPGRDVSIPEWYQTAEDELGLSASRSPPCTPEGD 433 (838)
Q Consensus 354 ~~~~~g~~~~a~~i~~~~~~~~~~~~r~~ga~~Lr~a~~~~~~~q~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 433 (838)
.....+-.-++++..+.. |+.++|+.|+. .++ .+|.||+-.+++|+. + +..+++
T Consensus 266 E~~ia~~~la~k~~~~~~------------------~~~~~~~~~~~-~~~-~i~~~~~~~~~~l~~---v---~~~~~~ 319 (489)
T KOG0631|consen 266 EGTIAAGELAAKILVELP------------------AYILRYQLQRA-WRG-DIGEGYERAEEMLGL---V---EESLKP 319 (489)
T ss_pred eeehhhHHHHHHhhcccH------------------HHHHhhhhhhc-ccc-ccchhHHHHHHHHHH---H---HhhcCc
Confidence 556666665556555541 67788999998 888 999999999998882 2 333343
Q ss_pred CccccccccceeccCCCCCCchHHHHHHHHhhccccccCCCCchHHHHHHHHHHhccCCCCCceEEEEcccccccccccc
Q 003222 434 STVKLSTEDFEILHGDCQGLPDTMSFLKSLVELDIIKDSDRTPEKRQMRERKAAAGLFNWEEEIFVARAPGRLDVMGGIA 513 (838)
Q Consensus 434 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~APGRv~L~GeH~ 513 (838)
+ +|++++.|-+.+.|+..|++++..+....... ..-.+++++......+.+..+..+.++|+|.+ |..+
T Consensus 320 e-------~f~~ee~~~~l~~~~~~f~~~~~T~~~v~~~~--~k~~~rakHv~sea~rv~q~~~~~~~a~~~~d--~~~~ 388 (489)
T KOG0631|consen 320 E-------GFNIEEVARALGLDTEEFLQSLLTLAAVDLQV--KKLYQRAKHVYSEALRVLQEEKLCARAPGRAD--GFLA 388 (489)
T ss_pred C-------CCCHHHHHHHhccchHHHHHHhccccchhhHH--HHHHHHHHHHHHHHHHHHHHHHHHhcCccchh--hhHH
Confidence 3 89999999999999999999999887775443 11234566666778888888888999999999 8888
Q ss_pred ccCCCeeeccccccceEEEEEEcCCccchhhhhhhhccCCCCCCCCCeEEEEecccccCCCCCceeccCCccccC-CCCc
Q 003222 514 DYSGSLVLQMPIREACHVALQKISPSKQRLWKHALARHNDKGQGPMPVLQIVSYGSELSNRGPTFDMDLSDFMDE-GKPM 592 (838)
Q Consensus 514 Dy~gg~vl~~ai~~~~~v~~~~~~d~~~~l~~~~~~~~~~~~~~~~~~i~i~s~~~~~~~~~~~~~~~l~~~~~~-~~p~ 592 (838)
||. +|-+.....|.+.+..+-+.+.+||++..++... -+.++....|-...++.+ .|..+.+.. -.+.
T Consensus 389 ~~g---~LmneS~~Sc~~~yEcscpel~qL~kiala~g~~-----gaRlTGaGwGGc~v~lvp---~d~~~~~~~~~~~~ 457 (489)
T KOG0631|consen 389 DFG---RLMNESHRSCDVLYECSCPELDQLCKIALANGGV-----GARLTGAGWGGCTVALVP---ADLVDFAVAALKEI 457 (489)
T ss_pred HHH---HHhhhhhHHHHHHHhcCCHhHHHHHHHHHhcCCc-----cceeeccccccceeeecc---ccchHHHHHhhhhh
Confidence 876 7888888999999998888889999998876544 244444443321112111 121111111 2356
Q ss_pred chhhhhcccCCCCCCChhHHHHHHHHHHH
Q 003222 593 SYEKAKKYFDTNPSQKWAAYVAGTILVLM 621 (838)
Q Consensus 593 ~~~~~~~~~~~~~~~~w~~y~~g~i~~~~ 621 (838)
.|+|+..++..++...|.-|.++.+-.++
T Consensus 458 ~Y~ka~~~~~~~~~k~~~~~skp~~g~~l 486 (489)
T KOG0631|consen 458 YYEKAYPKFAQDELKKALIVSKPAAGVLL 486 (489)
T ss_pred hhccccchhhhchhhceEEEecCchhhhh
Confidence 78888777777767778777777665544
|
|
| >PRK14608 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional | Back alignment and domain information |
|---|
Probab=99.17 E-value=6.4e-10 Score=120.48 Aligned_cols=115 Identities=16% Similarity=0.137 Sum_probs=90.0
Q ss_pred hhHHHHHHHHHHHHHhCCCCCCCEEEEEEeCCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhhhcCCC
Q 003222 609 WAAYVAGTILVLMTELGVRFEDSISMLVSSAVPEGKGVSSSASVEVASMSAIAAAHGLNIHPRDLALLCQKVENHIVGAP 688 (838)
Q Consensus 609 w~~y~~g~i~~~~~~~g~~~~~g~~i~i~s~iP~g~GLgSSAA~~va~~~al~~l~~~~l~~~ela~~a~~~E~~~~G~~ 688 (838)
+.|++.-++..+.+..|.. ..|+++.+.++||+|+|||||||..+|++.+++.++|.++++++++++|..+|
T Consensus 69 ~~Nlv~ka~~~~~~~~g~~-~~~~~i~i~k~IP~~~GLGsssa~aaa~l~~l~~l~~~~ls~~el~~la~~ig------- 140 (290)
T PRK14608 69 DDNLVLRAARALRARVGPG-LPPGAFHLEKNLPVAAGIGGGSADAAAALRLLARLWGLALDDERLAALALSLG------- 140 (290)
T ss_pred CCcHHHHHHHHHHHHhCCC-CCceEEEEEeCCcCcCCchHHHHHHHHHHHHHHHHhCCCcCHHHHHHHHHHhC-------
Confidence 5788877777777666532 25899999999999999999999999999999999999999999999999764
Q ss_pred CChhhHHHhhcCCCCeEEEEEecCCceeeeeccCCCeEEEEEeCCCCCcC
Q 003222 689 CGVMDQMASACGEANKLLAMVCQPAELLGVVEIPSHIRFWGIDSGIRHSV 738 (838)
Q Consensus 689 ~G~mDq~a~~~G~~~~~l~~d~~~~~~~~~v~~~~~~~~vi~~s~~~~~~ 738 (838)
.|-..+++||. .+. ....+...+++.+.++.+++++++...++
T Consensus 141 ---~dv~~~l~gg~---~~~-~g~g~~~~~l~~~~~~~~vv~~p~~~~sT 183 (290)
T PRK14608 141 ---ADVPVCLDSRP---LIM-RGIGEELTPLPGLPSLPAVLVNPGVPVAT 183 (290)
T ss_pred ---CCcchhhcCCe---EEE-EecCCEeEECCCCCCcEEEEECCCCCcCh
Confidence 37778899984 332 22333335554335677899998888764
|
|
| >cd04962 GT1_like_5 This family is most closely related to the GT1 family of glycosyltransferases | Back alignment and domain information |
|---|
Probab=99.17 E-value=3.8e-09 Score=118.09 Aligned_cols=131 Identities=13% Similarity=0.120 Sum_probs=90.0
Q ss_pred HHHHHHhCCCCCCcEEEEEcCCCCch---hhhHHh---hCC-CCcEEEEeCCCCCC-----------CCCCeEECCCCCC
Q 003222 211 KEVRKELGIEDDVKLLILNFGGQPAG---WKLKEE---YLP-SGWKCLVCGASDSQ-----------LPPNFIKLPKDAY 272 (838)
Q Consensus 211 ~~~r~~l~~~~~~~~Vlvs~Gs~~~~---~~ll~~---l~~-~~~~~vv~G~~~~~-----------lp~nv~~~~~~~~ 272 (838)
...++.++.+.+ +.+++++|..... ..+++. +.. .++.++++|..... +.++|+++++.+.
T Consensus 185 ~~~~~~~~~~~~-~~~il~~g~l~~~K~~~~li~a~~~l~~~~~~~l~i~G~g~~~~~~~~~~~~~~~~~~v~~~g~~~~ 263 (371)
T cd04962 185 EALKRRLGAPEG-EKVLIHISNFRPVKRIDDVIRIFAKVRKEVPARLLLVGDGPERSPAERLARELGLQDDVLFLGKQDH 263 (371)
T ss_pred HHHHHhcCCCCC-CeEEEEecccccccCHHHHHHHHHHHHhcCCceEEEEcCCcCHHHHHHHHHHcCCCceEEEecCccc
Confidence 345566776544 4567777776542 223332 222 35677888865421 3568999998888
Q ss_pred HHHHHhhcCEEEec----CChhhHHHHHHcCCcEEEEeCCCCCChHHHHHHHHHcCcEEEEecCCCChhhHHHHHHHHhh
Q 003222 273 TPDFMAASDCMLGK----IGYGTVSEALAYKLPFVFVRRDYFNEEPFLRNMLEFYQGGVEMIRRDLLTGHWKPYLERAIS 348 (838)
Q Consensus 273 ~pdlLa~adl~It~----gG~~Tv~Eal~~GvP~l~iP~~~~~EQ~~Na~~l~~~G~g~~l~~~~~~~~~l~~~l~~ll~ 348 (838)
++++|+.||++|.- +...++.||+++|+|+|+.+... .++.+++...|..++..+ .+.+..+|.++++
T Consensus 264 ~~~~~~~~d~~v~ps~~E~~~~~~~EAma~g~PvI~s~~~~------~~e~i~~~~~G~~~~~~~--~~~l~~~i~~l~~ 335 (371)
T cd04962 264 VEELLSIADLFLLPSEKESFGLAALEAMACGVPVVASNAGG------IPEVVKHGETGFLVDVGD--VEAMAEYALSLLE 335 (371)
T ss_pred HHHHHHhcCEEEeCCCcCCCccHHHHHHHcCCCEEEeCCCC------chhhhcCCCceEEcCCCC--HHHHHHHHHHHHh
Confidence 99999999999953 33469999999999999986433 334466656787777655 4678889988887
Q ss_pred CC
Q 003222 349 LK 350 (838)
Q Consensus 349 ~~ 350 (838)
++
T Consensus 336 ~~ 337 (371)
T cd04962 336 DD 337 (371)
T ss_pred CH
Confidence 65
|
Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog |
| >COG0083 ThrB Homoserine kinase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.14 E-value=7.4e-10 Score=117.74 Aligned_cols=120 Identities=22% Similarity=0.353 Sum_probs=92.2
Q ss_pred HHHHHHHHHHHHhCCCCCCCEEEEEEeCCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhhhcCCCCCh
Q 003222 612 YVAGTILVLMTELGVRFEDSISMLVSSAVPEGKGVSSSASVEVASMSAIAAAHGLNIHPRDLALLCQKVENHIVGAPCGV 691 (838)
Q Consensus 612 y~~g~i~~~~~~~g~~~~~g~~i~i~s~iP~g~GLgSSAA~~va~~~al~~l~~~~l~~~ela~~a~~~E~~~~G~~~G~ 691 (838)
.+--++..++++.|.+. ++++.++++||.|+|||||||.+||.+.|++++++.+++++++.+++-..|.+
T Consensus 60 ~~~~~~~~~~~~~~~~~--~~~i~i~k~IP~~rGLGSSaAsiVAal~aan~l~~~~L~~~~ll~~a~~~EgH-------- 129 (299)
T COG0083 60 LVYQAALKFLEALGIEA--GVKIRIEKGIPLGRGLGSSAASIVAALAAANELAGLPLSKEELLQLALEIEGH-------- 129 (299)
T ss_pred eHHHHHHHHHHHhCCCc--cEEEEEEcCCCCCCCCcHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhcCC--------
Confidence 34444566777888764 49999999999999999999999999999999999999999999999999963
Q ss_pred hhHH-HhhcCCCCeEEEEEecCCceeeeeccCCCeEEEEE------eCCCCCcCCCCchh
Q 003222 692 MDQM-ASACGEANKLLAMVCQPAELLGVVEIPSHIRFWGI------DSGIRHSVGGADYG 744 (838)
Q Consensus 692 mDq~-a~~~G~~~~~l~~d~~~~~~~~~v~~~~~~~~vi~------~s~~~~~~~~~~y~ 744 (838)
-||. +|++||. .+....+.-...+++++.++.++++ .|...|..++.+|.
T Consensus 130 pDNVapa~lGG~---~l~~~~~~~~~~~v~~~~~~~~v~~iP~~e~sT~~aR~vLP~~~~ 186 (299)
T COG0083 130 PDNVAPAVLGGL---VLVEEESGIISVKVPFPSDLKLVVVIPNFEVSTAEARKVLPKSYS 186 (299)
T ss_pred CchHHHHhhCCE---EEEeecCCceEEEccCCcceEEEEEeCCccccHHHHHHhccccCC
Confidence 4887 6899993 2222212212246677778887775 46666777777664
|
|
| >cd03816 GT1_ALG1_like This family is most closely related to the GT1 family of glycosyltransferases | Back alignment and domain information |
|---|
Probab=99.09 E-value=2.9e-08 Score=113.60 Aligned_cols=119 Identities=14% Similarity=0.160 Sum_probs=79.8
Q ss_pred CCCcEEEEEcCCCCch---hhhHHh---hC--------CCCcEEEEeCCCCCC---------CC-CCeEEC-CCC--CCH
Q 003222 221 DDVKLLILNFGGQPAG---WKLKEE---YL--------PSGWKCLVCGASDSQ---------LP-PNFIKL-PKD--AYT 273 (838)
Q Consensus 221 ~~~~~Vlvs~Gs~~~~---~~ll~~---l~--------~~~~~~vv~G~~~~~---------lp-~nv~~~-~~~--~~~ 273 (838)
++++.++++.|..... ..++++ +. .+++.++++|..... +. +|+.++ ++. +.+
T Consensus 229 ~~~~~vi~~~grl~~~K~~~~li~A~~~l~~~~~~~~~~~~i~l~ivG~G~~~~~l~~~~~~~~l~~~~~~~g~~~~~~~ 308 (415)
T cd03816 229 EERPALLVSSTSWTPDEDFGILLDALVAYEKSAATGPKLPKLLCIITGKGPLKEKYLERIKELKLKKVTIRTPWLSAEDY 308 (415)
T ss_pred CCCceEEEEeccccCCCCHHHHHHHHHHHHHhhcccccCCCEEEEEEecCccHHHHHHHHHHcCCCcEEEEcCcCCHHHH
Confidence 3556677777876642 223332 21 135788888865421 11 466644 454 467
Q ss_pred HHHHhhcCEEEe----cCC---hhhHHHHHHcCCcEEEEeCCCCCChHHHHHHHHHcCcEEEEecCCCChhhHHHHHHHH
Q 003222 274 PDFMAASDCMLG----KIG---YGTVSEALAYKLPFVFVRRDYFNEEPFLRNMLEFYQGGVEMIRRDLLTGHWKPYLERA 346 (838)
Q Consensus 274 pdlLa~adl~It----~gG---~~Tv~Eal~~GvP~l~iP~~~~~EQ~~Na~~l~~~G~g~~l~~~~~~~~~l~~~l~~l 346 (838)
|++|+.||++|. ..| .+++.|||++|+|+|+.... ...+.+++.+.|+.+. +++.+.++|.++
T Consensus 309 ~~~l~~aDv~v~~~~~~~~~~~p~~~~Eama~G~PVI~s~~~------~~~eiv~~~~~G~lv~----d~~~la~~i~~l 378 (415)
T cd03816 309 PKLLASADLGVSLHTSSSGLDLPMKVVDMFGCGLPVCALDFK------CIDELVKHGENGLVFG----DSEELAEQLIDL 378 (415)
T ss_pred HHHHHhCCEEEEccccccccCCcHHHHHHHHcCCCEEEeCCC------CHHHHhcCCCCEEEEC----CHHHHHHHHHHH
Confidence 899999999994 112 34799999999999997632 2445677777898873 367899999999
Q ss_pred hhC
Q 003222 347 ISL 349 (838)
Q Consensus 347 l~~ 349 (838)
+++
T Consensus 379 l~~ 381 (415)
T cd03816 379 LSN 381 (415)
T ss_pred Hhc
Confidence 987
|
The yeast gene ALG1 has been shown to function as a mannosyltransferase that catalyzes the formation of dolichol pyrophosphate (Dol-PP)-GlcNAc2Man from GDP-Man and Dol-PP-Glc-NAc2, and participates in the formation of the lipid-linked precursor oligosaccharide for N-glycosylation. In humans ALG1 has been associated with the congenital disorders of glycosylation (CDG) designated as subtype CDG-Ik. |
| >cd03825 GT1_wcfI_like This family is most closely related to the GT1 family of glycosyltransferases | Back alignment and domain information |
|---|
Probab=99.08 E-value=2.3e-08 Score=111.13 Aligned_cols=134 Identities=23% Similarity=0.196 Sum_probs=88.8
Q ss_pred ChHHHHHHhCCCCCCcEEEEEcCCCC---ch-hhhHHh---hCC---CCcEEEEeCCCCCC----CCCCeEECCCCCC--
Q 003222 209 SRKEVRKELGIEDDVKLLILNFGGQP---AG-WKLKEE---YLP---SGWKCLVCGASDSQ----LPPNFIKLPKDAY-- 272 (838)
Q Consensus 209 ~~~~~r~~l~~~~~~~~Vlvs~Gs~~---~~-~~ll~~---l~~---~~~~~vv~G~~~~~----lp~nv~~~~~~~~-- 272 (838)
.++..++.++.++++.++++...+.. .+ ..+++. +.. +++.++++|..... +..++..+++..+
T Consensus 177 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~K~~~~ll~a~~~l~~~~~~~~~~~i~G~~~~~~~~~~~~~v~~~g~~~~~~ 256 (365)
T cd03825 177 DKREARKRLGLPADKKIILFGAVGGTDPRKGFDELIEALKRLAERWKDDIELVVFGASDPEIPPDLPFPVHYLGSLNDDE 256 (365)
T ss_pred cHHHHHHHhCCCCCCeEEEEEecCCCccccCHHHHHHHHHHhhhccCCCeEEEEeCCCchhhhccCCCceEecCCcCCHH
Confidence 34566777887766655544333322 12 223332 322 45677888876532 4567888888763
Q ss_pred -HHHHHhhcCEEEecC----ChhhHHHHHHcCCcEEEEeCCCCCChHHHHHHHHHcCcEEEEecCCCChhhHHHHHHHHh
Q 003222 273 -TPDFMAASDCMLGKI----GYGTVSEALAYKLPFVFVRRDYFNEEPFLRNMLEFYQGGVEMIRRDLLTGHWKPYLERAI 347 (838)
Q Consensus 273 -~pdlLa~adl~It~g----G~~Tv~Eal~~GvP~l~iP~~~~~EQ~~Na~~l~~~G~g~~l~~~~~~~~~l~~~l~~ll 347 (838)
++.+|+.||++|... ..+++.||+++|+|+|+.......|. +...+.|..++..+ .+.+..+|.+++
T Consensus 257 ~~~~~~~~ad~~l~ps~~e~~g~~~~Eam~~g~PvI~~~~~~~~e~------~~~~~~g~~~~~~~--~~~~~~~l~~l~ 328 (365)
T cd03825 257 SLALIYSAADVFVVPSLQENFPNTAIEALACGTPVVAFDVGGIPDI------VDHGVTGYLAKPGD--PEDLAEGIEWLL 328 (365)
T ss_pred HHHHHHHhCCEEEeccccccccHHHHHHHhcCCCEEEecCCCChhh------eeCCCceEEeCCCC--HHHHHHHHHHHH
Confidence 568899999999853 34789999999999999875444433 44445777776554 468889999998
Q ss_pred hCC
Q 003222 348 SLK 350 (838)
Q Consensus 348 ~~~ 350 (838)
+++
T Consensus 329 ~~~ 331 (365)
T cd03825 329 ADP 331 (365)
T ss_pred hCH
Confidence 765
|
wcfI in Bacteroides fragilis has been shown to be involved in the capsular polysaccharide biosynthesis. |
| >cd03817 GT1_UGDG_like This family is most closely related to the GT1 family of glycosyltransferases | Back alignment and domain information |
|---|
Probab=99.08 E-value=3.2e-08 Score=109.20 Aligned_cols=296 Identities=20% Similarity=0.175 Sum_probs=155.9
Q ss_pred CCCcccHHHHHHHHHHHHHCCCeEEEEeCCCCcccccccCCCceeeeeeccCCCcccccccccChHHHHHHHHHHhhccH
Q 003222 24 GHGFGHATRVVEVVRNLISAGHDVHVVTGAPDFVFTSEIQSPRLFIRKVLLDCGAVQADALTVDRLASLEKYSETAVAPR 103 (838)
Q Consensus 24 g~G~GHv~r~laLA~~L~~~Gh~V~~v~~~~~~~~~~~i~~~~~~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~ 103 (838)
....|+..++..++++|.++||+|++++........... ...... ... .. . ........+ .
T Consensus 11 p~~~G~~~~~~~l~~~L~~~g~~v~v~~~~~~~~~~~~~---~~~~~~--~~~-------~~-~---~~~~~~~~~--~- 71 (374)
T cd03817 11 PQVNGVATSIRRLAEELEKRGHEVYVVAPSYPGAPEEEE---VVVVRP--FRV-------PT-F---KYPDFRLPL--P- 71 (374)
T ss_pred CCCCCeehHHHHHHHHHHHcCCeEEEEeCCCCCCCcccc---cccccc--ccc-------cc-c---hhhhhhccc--c-
Confidence 345699999999999999999999999875321111100 000000 000 00 0 000000000 0
Q ss_pred HHHHHHHHHHHhcCCCcEEEECCCc----hHHHHHHHhCCcEEEEecCchhHHHHhhhhhcccchHHHHH--HHHhhccc
Q 003222 104 KSILKDEVEWLNSIKADLVVSDVVP----VACRAAADAGIRSVCVTNFSWDFIYAEYVMAAGHHHRSIVW--QIAEDYSH 177 (838)
Q Consensus 104 ~~~l~~~~~~L~~~kPDlVVsD~~~----~~~~aA~~lgIP~V~is~~~~~~i~~~~~~~~~~~~~~i~~--~l~~~y~~ 177 (838)
........+++.+||+|+...++ .+..+++..++|.+...+..|... ..+............. .....+..
T Consensus 72 --~~~~~~~~~~~~~~Div~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (374)
T cd03817 72 --IPRALIIILKELGPDIVHTHTPFSLGLLGLRVARKLGIPVVATYHTMYEDY-THYVPLGRLLARAVVRRKLSRRFYNR 148 (374)
T ss_pred --HHHHHHHHHhhcCCCEEEECCchhhhhHHHHHHHHcCCCEEEEecCCHHHH-HHHHhcccchhHHHHHHHHHHHHhhh
Confidence 11222345788999999987533 234456678999876543332211 1111110000011111 11122334
Q ss_pred cceEEecCCCC-------CCCCCCceeecCccccc-CCcChHHHHHHhCCCCCCcEEEEEcCCCCch---hhhHH---hh
Q 003222 178 CEFLIRLPGYC-------PMPAFRDVIDVPLVVRR-LHKSRKEVRKELGIEDDVKLLILNFGGQPAG---WKLKE---EY 243 (838)
Q Consensus 178 ~d~ll~~~~~~-------~~p~~~~v~~ip~~~~~-~~~~~~~~r~~l~~~~~~~~Vlvs~Gs~~~~---~~ll~---~l 243 (838)
++.++...... ..+....+.+.|..... ....+...++.++.. +++.+++..|+.... ..+++ .+
T Consensus 149 ~d~i~~~s~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~G~~~~~k~~~~l~~~~~~~ 227 (374)
T cd03817 149 CDAVIAPSEKIADLLREYGVKRPIEVIPTGIDLDRFEPVDGDDERRKLGIP-EDEPVLLYVGRLAKEKNIDFLIRAFARL 227 (374)
T ss_pred CCEEEeccHHHHHHHHhcCCCCceEEcCCccchhccCccchhHHHHhcCCC-CCCeEEEEEeeeecccCHHHHHHHHHHH
Confidence 45444321100 00110112222221111 112223334555554 445667777876542 22333 22
Q ss_pred CC--CCcEEEEeCCCCC-----------CCCCCeEECCCCC--CHHHHHhhcCEEEecC----ChhhHHHHHHcCCcEEE
Q 003222 244 LP--SGWKCLVCGASDS-----------QLPPNFIKLPKDA--YTPDFMAASDCMLGKI----GYGTVSEALAYKLPFVF 304 (838)
Q Consensus 244 ~~--~~~~~vv~G~~~~-----------~lp~nv~~~~~~~--~~pdlLa~adl~It~g----G~~Tv~Eal~~GvP~l~ 304 (838)
.. +++.++++|.... .+.+||.++++.+ .++++|+.||++|..+ ..+++.||+++|+|+|+
T Consensus 228 ~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~ad~~l~~s~~e~~~~~~~Ea~~~g~PvI~ 307 (374)
T cd03817 228 LKEEPDVKLVIVGDGPEREELEELARELGLADRVIFTGFVPREELPDYYKAADLFVFASTTETQGLVLLEAMAAGLPVVA 307 (374)
T ss_pred HHhCCCeEEEEEeCCchHHHHHHHHHHcCCCCcEEEeccCChHHHHHHHHHcCEEEecccccCcChHHHHHHHcCCcEEE
Confidence 22 5577888886542 1467899888873 5678999999999543 34689999999999999
Q ss_pred EeCCCCCChHHHHHHHHHcCcEEEEecCCCChhhHHHHHHHHhhCCC
Q 003222 305 VRRDYFNEEPFLRNMLEFYQGGVEMIRRDLLTGHWKPYLERAISLKP 351 (838)
Q Consensus 305 iP~~~~~EQ~~Na~~l~~~G~g~~l~~~~~~~~~l~~~l~~ll~~~~ 351 (838)
.+... .++.++..+.|..++..+. .+.++|.++++++.
T Consensus 308 ~~~~~------~~~~i~~~~~g~~~~~~~~---~~~~~i~~l~~~~~ 345 (374)
T cd03817 308 VDAPG------LPDLVADGENGFLFPPGDE---ALAEALLRLLQDPE 345 (374)
T ss_pred eCCCC------hhhheecCceeEEeCCCCH---HHHHHHHHHHhChH
Confidence 87432 3445666678888876543 78889999988763
|
UDP-glucose-diacylglycerol glucosyltransferase (UGDG; also known as 1,2-diacylglycerol 3-glucosyltransferase) catalyzes the transfer of glucose from UDP-glucose to 1,2-diacylglycerol forming 3-D-glucosyl-1,2-diacylglycerol. |
| >TIGR00191 thrB homoserine kinase | Back alignment and domain information |
|---|
Probab=99.07 E-value=1.3e-09 Score=119.11 Aligned_cols=116 Identities=22% Similarity=0.347 Sum_probs=89.6
Q ss_pred hHHHHHHHHHHHHHhCCCCCCCEEEEEEeCCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhhhcCCCC
Q 003222 610 AAYVAGTILVLMTELGVRFEDSISMLVSSAVPEGKGVSSSASVEVASMSAIAAAHGLNIHPRDLALLCQKVENHIVGAPC 689 (838)
Q Consensus 610 ~~y~~g~i~~~~~~~g~~~~~g~~i~i~s~iP~g~GLgSSAA~~va~~~al~~l~~~~l~~~ela~~a~~~E~~~~G~~~ 689 (838)
.|.+..++..+++..|... .|++|.+.++||.|+|||||||..+|++.|++.+++.++++++++++|.++|.+
T Consensus 60 ~Nlv~~a~~~~~~~~g~~~-~g~~i~i~~~IP~~~GLGSSsa~~vA~l~a~~~l~~~~l~~~el~~~a~~~E~h------ 132 (302)
T TIGR00191 60 DNLIYQVAKRFLDQLGIRM-PPVKVTLEKNIPLGRGLGSSAAAIVAALAAANELCGLPLSKERLLDYASELEGH------ 132 (302)
T ss_pred cccHHHHHHHHHHHcCCCC-CCEEEEEEcCCCCcCCCChHHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHhcCC------
Confidence 3566666677777777643 589999999999999999999999999999999999999999999999999952
Q ss_pred ChhhHH-HhhcCCCCeEEEEEecCCceeeeeccC--CCeEEEEEeCCCCCcC
Q 003222 690 GVMDQM-ASACGEANKLLAMVCQPAELLGVVEIP--SHIRFWGIDSGIRHSV 738 (838)
Q Consensus 690 G~mDq~-a~~~G~~~~~l~~d~~~~~~~~~v~~~--~~~~~vi~~s~~~~~~ 738 (838)
.|+. ++.+||. .+...+.... ..++++ +++.+++++++..-++
T Consensus 133 --~Dnv~~~l~GG~---~~~~~~~~~~-~~~~~~~~~~~~~vl~~p~~~~sT 178 (302)
T TIGR00191 133 --PDNVAPALLGGF---QLAFVEDDKL-EVLKIPIFSKLDWVLAIPNIEVST 178 (302)
T ss_pred --cccHHHHhccCE---EEEEEcCCce-EEEEeCCCCCEEEEEEECCCcccH
Confidence 5765 5789994 3333233222 344433 6788899988876543
|
P.aeruginosa homoserine kinase seems not to be homologous (see PROSITE:PDOC0054) |
| >cd03808 GT1_cap1E_like This family is most closely related to the GT1 family of glycosyltransferases | Back alignment and domain information |
|---|
Probab=99.04 E-value=7.7e-08 Score=105.22 Aligned_cols=121 Identities=18% Similarity=0.084 Sum_probs=85.9
Q ss_pred CCcEEEEEcCCCCch---hhhHH---hhC--CCCcEEEEeCCCCCC------------CCCCeEECCCCCCHHHHHhhcC
Q 003222 222 DVKLLILNFGGQPAG---WKLKE---EYL--PSGWKCLVCGASDSQ------------LPPNFIKLPKDAYTPDFMAASD 281 (838)
Q Consensus 222 ~~~~Vlvs~Gs~~~~---~~ll~---~l~--~~~~~~vv~G~~~~~------------lp~nv~~~~~~~~~pdlLa~ad 281 (838)
+.+.++++.|+.... ..+++ .+. .+++.++++|..... ...+|.+.++.+.+.++|+.||
T Consensus 186 ~~~~~i~~~G~~~~~k~~~~li~~~~~l~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~ad 265 (359)
T cd03808 186 EDDPVFLFVARLLKDKGIDELLEAARILKAKGPNVRLLLVGDGDEENPAAILEIEKLGLEGRVEFLGFRDDVPELLAAAD 265 (359)
T ss_pred CCCcEEEEEeccccccCHHHHHHHHHHHHhcCCCeEEEEEcCCCcchhhHHHHHHhcCCcceEEEeeccccHHHHHHhcc
Confidence 345677888876542 12222 232 356788888876431 2457888888778889999999
Q ss_pred EEEecCC----hhhHHHHHHcCCcEEEEeCCCCCChHHHHHHHHHcCcEEEEecCCCChhhHHHHHHHHhhCC
Q 003222 282 CMLGKIG----YGTVSEALAYKLPFVFVRRDYFNEEPFLRNMLEFYQGGVEMIRRDLLTGHWKPYLERAISLK 350 (838)
Q Consensus 282 l~It~gG----~~Tv~Eal~~GvP~l~iP~~~~~EQ~~Na~~l~~~G~g~~l~~~~~~~~~l~~~l~~ll~~~ 350 (838)
++|..+. .+++.||+++|+|+|+.+.... .+.+++.+.|..++..+ ++.+.++|.+++.++
T Consensus 266 i~i~ps~~e~~~~~~~Ea~~~G~Pvi~s~~~~~------~~~i~~~~~g~~~~~~~--~~~~~~~i~~l~~~~ 330 (359)
T cd03808 266 VFVLPSYREGLPRVLLEAMAMGRPVIATDVPGC------REAVIDGVNGFLVPPGD--AEALADAIERLIEDP 330 (359)
T ss_pred EEEecCcccCcchHHHHHHHcCCCEEEecCCCc------hhhhhcCcceEEECCCC--HHHHHHHHHHHHhCH
Confidence 9997542 4689999999999999875433 33466677888887655 468889999988765
|
cap1E in Streptococcus pneumoniae is required for the synthesis of type 1 capsular polysaccharides. |
| >PRK14616 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional | Back alignment and domain information |
|---|
Probab=99.04 E-value=5.4e-09 Score=113.32 Aligned_cols=113 Identities=15% Similarity=0.125 Sum_probs=80.4
Q ss_pred hHHHHHHHHHHHHHhCCCCCCCEEEEEEeCCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhhhcCCCC
Q 003222 610 AAYVAGTILVLMTELGVRFEDSISMLVSSAVPEGKGVSSSASVEVASMSAIAAAHGLNIHPRDLALLCQKVENHIVGAPC 689 (838)
Q Consensus 610 ~~y~~g~i~~~~~~~g~~~~~g~~i~i~s~iP~g~GLgSSAA~~va~~~al~~l~~~~l~~~ela~~a~~~E~~~~G~~~ 689 (838)
.|.+..++..+.+..+. ..|++|.|.++||.++|||||||..+|++.+++.++|.++++++++++|.+.|.
T Consensus 64 ~nl~~~a~~~~~~~~~~--~~~~~I~i~k~IP~~~GLGssSA~aaA~l~al~~l~g~~ls~~el~~~a~~ig~------- 134 (287)
T PRK14616 64 SNLCIRAAKALQEYAGV--SKGVSITLDKRVPFGAGLGGGSSDAATVLRVLNELWEINAPSADLHRLAVKLGA------- 134 (287)
T ss_pred cHHHHHHHHHHHHHhCC--CCCeEEEEEeCCCCcCCchHHHHHHHHHHHHHHHHhCCCcCHHHHHHHHHHhCC-------
Confidence 45555555666666665 369999999999999999999999999999999999999999999999998764
Q ss_pred ChhhHHHhh-cCCCCeEEEEEecCCceeeeeccCCCeEEEEEeCCCCCcC
Q 003222 690 GVMDQMASA-CGEANKLLAMVCQPAELLGVVEIPSHIRFWGIDSGIRHSV 738 (838)
Q Consensus 690 G~mDq~a~~-~G~~~~~l~~d~~~~~~~~~v~~~~~~~~vi~~s~~~~~~ 738 (838)
|--+++ +||. . +.....+..++++.+..+.+++++.+..-++
T Consensus 135 ---Dvp~~l~~gg~---~-~~~g~g~~~~~~~~~~~~~~vvv~P~~~vsT 177 (287)
T PRK14616 135 ---DVPYFLEMKGL---A-YATGIGDELEDLQLTLPFHIVTVFPEEHIST 177 (287)
T ss_pred ---CcceEeccCCc---E-EEEEcCceeEECCcCCCcEEEEECCCCCcCH
Confidence 311122 3552 1 2222233223444433466888887766544
|
|
| >cd03794 GT1_wbuB_like This family is most closely related to the GT1 family of glycosyltransferases | Back alignment and domain information |
|---|
Probab=99.04 E-value=8.2e-08 Score=106.31 Aligned_cols=121 Identities=18% Similarity=0.122 Sum_probs=81.9
Q ss_pred CCcEEEEEcCCCCch---hhhHH---hhCC-CCcEEEEeCCCCCC----------CCCCeEECCCCC--CHHHHHhhcCE
Q 003222 222 DVKLLILNFGGQPAG---WKLKE---EYLP-SGWKCLVCGASDSQ----------LPPNFIKLPKDA--YTPDFMAASDC 282 (838)
Q Consensus 222 ~~~~Vlvs~Gs~~~~---~~ll~---~l~~-~~~~~vv~G~~~~~----------lp~nv~~~~~~~--~~pdlLa~adl 282 (838)
+.+.++++.|+.... ..+++ .+.. +++.++++|..... ..+|+.++++.+ .+.++|..||+
T Consensus 218 ~~~~~i~~~G~~~~~k~~~~l~~~~~~l~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~~di 297 (394)
T cd03794 218 DDKFVVLYAGNIGRAQGLDTLLEAAALLKDRPDIRFLIVGDGPEKEELKELAKALGLDNVTFLGRVPKEELPELLAAADV 297 (394)
T ss_pred CCcEEEEEecCcccccCHHHHHHHHHHHhhcCCeEEEEeCCcccHHHHHHHHHHcCCCcEEEeCCCChHHHHHHHHhhCe
Confidence 455677888877643 22233 2322 36778888865421 247898888763 46689999999
Q ss_pred EEecCC---------hhhHHHHHHcCCcEEEEeCCCCCChHHHHHHHHHcCcEEEEecCCCChhhHHHHHHHHhhCC
Q 003222 283 MLGKIG---------YGTVSEALAYKLPFVFVRRDYFNEEPFLRNMLEFYQGGVEMIRRDLLTGHWKPYLERAISLK 350 (838)
Q Consensus 283 ~It~gG---------~~Tv~Eal~~GvP~l~iP~~~~~EQ~~Na~~l~~~G~g~~l~~~~~~~~~l~~~l~~ll~~~ 350 (838)
+|.... .+++.||+++|+|+|+.+.....| .+...+.|..++..+ .+.+.++|.+++.++
T Consensus 298 ~i~~~~~~~~~~~~~p~~~~Ea~~~G~pvi~~~~~~~~~------~~~~~~~g~~~~~~~--~~~l~~~i~~~~~~~ 366 (394)
T cd03794 298 GLVPLKPGPAFEGVSPSKLFEYMAAGKPVLASVDGESAE------LVEEAGAGLVVPPGD--PEALAAAILELLDDP 366 (394)
T ss_pred eEEeccCcccccccCchHHHHHHHCCCcEEEecCCCchh------hhccCCcceEeCCCC--HHHHHHHHHHHHhCh
Confidence 995322 234799999999999998554333 344447788887655 468899999998765
|
wbuB in E. coli is involved in the biosynthesis of the O26 O-antigen. It has been proposed to function as an N-acetyl-L-fucosamine (L-FucNAc) transferase. |
| >cd04951 GT1_WbdM_like This family is most closely related to the GT1 family of glycosyltransferases and is named after WbdM in Escherichia coli | Back alignment and domain information |
|---|
Probab=99.03 E-value=6.6e-08 Score=107.18 Aligned_cols=129 Identities=20% Similarity=0.253 Sum_probs=86.9
Q ss_pred HHHHHHhCCCCCCcEEEEEcCCCCch---hhhHHh---hCC--CCcEEEEeCCCCCC-----------CCCCeEECCCCC
Q 003222 211 KEVRKELGIEDDVKLLILNFGGQPAG---WKLKEE---YLP--SGWKCLVCGASDSQ-----------LPPNFIKLPKDA 271 (838)
Q Consensus 211 ~~~r~~l~~~~~~~~Vlvs~Gs~~~~---~~ll~~---l~~--~~~~~vv~G~~~~~-----------lp~nv~~~~~~~ 271 (838)
..+++.++++++ +.++++.|+.... ..+++. +.. +++.++++|..... +.+||.++++..
T Consensus 176 ~~~~~~~~~~~~-~~~~l~~g~~~~~kg~~~li~a~~~l~~~~~~~~l~i~G~g~~~~~~~~~~~~~~~~~~v~~~g~~~ 254 (360)
T cd04951 176 LKIRNALGVKND-TFVILAVGRLVEAKDYPNLLKAFAKLLSDYLDIKLLIAGDGPLRATLERLIKALGLSNRVKLLGLRD 254 (360)
T ss_pred HHHHHHcCcCCC-CEEEEEEeeCchhcCcHHHHHHHHHHHhhCCCeEEEEEcCCCcHHHHHHHHHhcCCCCcEEEecccc
Confidence 356677777544 4566777766542 223332 222 46788888865421 357899999888
Q ss_pred CHHHHHhhcCEEEecCC----hhhHHHHHHcCCcEEEEeCCCCCChHHHHHHHHHcCcEEEEecCCCChhhHHHHHHHHh
Q 003222 272 YTPDFMAASDCMLGKIG----YGTVSEALAYKLPFVFVRRDYFNEEPFLRNMLEFYQGGVEMIRRDLLTGHWKPYLERAI 347 (838)
Q Consensus 272 ~~pdlLa~adl~It~gG----~~Tv~Eal~~GvP~l~iP~~~~~EQ~~Na~~l~~~G~g~~l~~~~~~~~~l~~~l~~ll 347 (838)
+++++|+.||++|.... .+++.||+++|+|+|+..... +.+.++. .|..+...+ .+.+.++|.+++
T Consensus 255 ~~~~~~~~ad~~v~~s~~e~~~~~~~Ea~a~G~PvI~~~~~~------~~e~i~~--~g~~~~~~~--~~~~~~~i~~ll 324 (360)
T cd04951 255 DIAAYYNAADLFVLSSAWEGFGLVVAEAMACELPVVATDAGG------VREVVGD--SGLIVPISD--PEALANKIDEIL 324 (360)
T ss_pred cHHHHHHhhceEEecccccCCChHHHHHHHcCCCEEEecCCC------hhhEecC--CceEeCCCC--HHHHHHHHHHHH
Confidence 89999999999997543 468999999999999876432 3334544 355555544 468899999998
Q ss_pred hCC
Q 003222 348 SLK 350 (838)
Q Consensus 348 ~~~ 350 (838)
++.
T Consensus 325 ~~~ 327 (360)
T cd04951 325 KMS 327 (360)
T ss_pred hCC
Confidence 543
|
In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have |
| >cd03820 GT1_amsD_like This family is most closely related to the GT1 family of glycosyltransferases | Back alignment and domain information |
|---|
Probab=99.03 E-value=7.9e-08 Score=104.65 Aligned_cols=121 Identities=17% Similarity=0.103 Sum_probs=83.1
Q ss_pred CCcEEEEEcCCCCch---hhhHH---hhC--CCCcEEEEeCCCCCC-----------CCCCeEECCCCCCHHHHHhhcCE
Q 003222 222 DVKLLILNFGGQPAG---WKLKE---EYL--PSGWKCLVCGASDSQ-----------LPPNFIKLPKDAYTPDFMAASDC 282 (838)
Q Consensus 222 ~~~~Vlvs~Gs~~~~---~~ll~---~l~--~~~~~~vv~G~~~~~-----------lp~nv~~~~~~~~~pdlLa~adl 282 (838)
..+.++++.|+.... ..+++ .+. .+++.++++|..... ++.++.+.++.+.++++|+.||+
T Consensus 176 ~~~~~i~~~g~~~~~K~~~~l~~~~~~l~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~ad~ 255 (348)
T cd03820 176 LKSKRILAVGRLVPQKGFDLLIEAWAKIAKKHPDWKLRIVGDGPEREALEALIKELGLEDRVILLGFTKNIEEYYAKASI 255 (348)
T ss_pred CCCcEEEEEEeeccccCHHHHHHHHHHHHhcCCCeEEEEEeCCCCHHHHHHHHHHcCCCCeEEEcCCcchHHHHHHhCCE
Confidence 334566777766542 12233 232 356778888865421 35678888887788999999999
Q ss_pred EEecCC----hhhHHHHHHcCCcEEEEeCCCCCChHHHHHHHHHcC-cEEEEecCCCChhhHHHHHHHHhhCC
Q 003222 283 MLGKIG----YGTVSEALAYKLPFVFVRRDYFNEEPFLRNMLEFYQ-GGVEMIRRDLLTGHWKPYLERAISLK 350 (838)
Q Consensus 283 ~It~gG----~~Tv~Eal~~GvP~l~iP~~~~~EQ~~Na~~l~~~G-~g~~l~~~~~~~~~l~~~l~~ll~~~ 350 (838)
+|.... .+++.||+++|+|+|+.+.....+ .+...+ .|..++..+ .+.+.++|.++++++
T Consensus 256 ~i~ps~~e~~~~~~~Ea~a~G~Pvi~~~~~~~~~------~~~~~~~~g~~~~~~~--~~~~~~~i~~ll~~~ 320 (348)
T cd03820 256 FVLTSRFEGFPMVLLEAMAFGLPVISFDCPTGPS------EIIEDGVNGLLVPNGD--VEALAEALLRLMEDE 320 (348)
T ss_pred EEeCccccccCHHHHHHHHcCCCEEEecCCCchH------hhhccCcceEEeCCCC--HHHHHHHHHHHHcCH
Confidence 997542 368999999999999976432222 244444 788887655 468999999998766
|
AmSD in Erwinia amylovora has been shown to be involved in the biosynthesis of amylovoran, the acidic exopolysaccharide acting as a virulence factor. This enzyme may be responsible for the formation of galactose alpha-1,6 linkages in amylovoran. |
| >PF04007 DUF354: Protein of unknown function (DUF354); InterPro: IPR007152 Members of this family are around 350 amino acids in length | Back alignment and domain information |
|---|
Probab=99.02 E-value=1.9e-07 Score=102.38 Aligned_cols=307 Identities=17% Similarity=0.151 Sum_probs=161.7
Q ss_pred EEEEEeecCCCcccHHHHHHHHHHHHHCCCeEEEEeCCCCcccccccCCCceeeeeeccCCCcccccccccChHHHHHHH
Q 003222 16 LVFAYYVTGHGFGHATRVVEVVRNLISAGHDVHVVTGAPDFVFTSEIQSPRLFIRKVLLDCGAVQADALTVDRLASLEKY 95 (838)
Q Consensus 16 ~~Il~~v~g~G~GHv~r~laLA~~L~~~Gh~V~~v~~~~~~~~~~~i~~~~~~~~~~~~~~g~~~~~~~~~~~~~~l~~~ 95 (838)
|+|++-+..+ -|+.....++++|.++||+|.+.+.... .....+..-++.+..+ |-. .... ..++
T Consensus 1 MkIwiDi~~p--~hvhfFk~~I~eL~~~GheV~it~R~~~-~~~~LL~~yg~~y~~i----G~~-----g~~~---~~Kl 65 (335)
T PF04007_consen 1 MKIWIDITHP--AHVHFFKNIIRELEKRGHEVLITARDKD-ETEELLDLYGIDYIVI----GKH-----GDSL---YGKL 65 (335)
T ss_pred CeEEEECCCc--hHHHHHHHHHHHHHhCCCEEEEEEeccc-hHHHHHHHcCCCeEEE----cCC-----CCCH---HHHH
Confidence 4565566555 5999999999999999999999876431 1111121112333332 111 1111 1112
Q ss_pred HHHhhccHHHHHHHHHHHHhcCCCcEEEECCCchHHHHHHHhCCcEEEEecCchhHHHHhhhhhcccchHHHHHHHHhhc
Q 003222 96 SETAVAPRKSILKDEVEWLNSIKADLVVSDVVPVACRAAADAGIRSVCVTNFSWDFIYAEYVMAAGHHHRSIVWQIAEDY 175 (838)
Q Consensus 96 ~~~~~~~~~~~l~~~~~~L~~~kPDlVVsD~~~~~~~aA~~lgIP~V~is~~~~~~i~~~~~~~~~~~~~~i~~~l~~~y 175 (838)
... .....+..+++++++||++|+-..+.+..+|..+|+|+|.+.|..+........ +
T Consensus 66 ~~~-----~~R~~~l~~~~~~~~pDv~is~~s~~a~~va~~lgiP~I~f~D~e~a~~~~~Lt-----------------~ 123 (335)
T PF04007_consen 66 LES-----IERQYKLLKLIKKFKPDVAISFGSPEAARVAFGLGIPSIVFNDTEHAIAQNRLT-----------------L 123 (335)
T ss_pred HHH-----HHHHHHHHHHHHhhCCCEEEecCcHHHHHHHHHhCCCeEEEecCchhhccceee-----------------h
Confidence 221 112344577788999999999988888989999999999986643210000000 0
Q ss_pred cccceEEecCCCCCCC---CC---CceeecCccc-----ccCCcChHHHHHHhCCCCCCcEEEEEcCCCCch--------
Q 003222 176 SHCEFLIRLPGYCPMP---AF---RDVIDVPLVV-----RRLHKSRKEVRKELGIEDDVKLLILNFGGQPAG-------- 236 (838)
Q Consensus 176 ~~~d~ll~~~~~~~~p---~~---~~v~~ip~~~-----~~~~~~~~~~r~~l~~~~~~~~Vlvs~Gs~~~~-------- 236 (838)
.-++.++. |...+.. .+ .+++..+... .+.+++ +++.+.+|++ +.++|++=+-+..+.
T Consensus 124 Pla~~i~~-P~~~~~~~~~~~G~~~~i~~y~G~~E~ayl~~F~Pd-~~vl~~lg~~-~~~yIvvR~~~~~A~y~~~~~~i 200 (335)
T PF04007_consen 124 PLADVIIT-PEAIPKEFLKRFGAKNQIRTYNGYKELAYLHPFKPD-PEVLKELGLD-DEPYIVVRPEAWKASYDNGKKSI 200 (335)
T ss_pred hcCCeeEC-CcccCHHHHHhcCCcCCEEEECCeeeEEeecCCCCC-hhHHHHcCCC-CCCEEEEEeccccCeeecCccch
Confidence 00111111 1100000 00 0122111111 112333 3567789976 678888877665441
Q ss_pred -hhhHHhhCCCCcEEEEeCCCCCC--CCC--CeEECCCCCCHHHHHhhcCEEEecCChhhHHHHHHcCCcEEEEeCCCCC
Q 003222 237 -WKLKEEYLPSGWKCLVCGASDSQ--LPP--NFIKLPKDAYTPDFMAASDCMLGKIGYGTVSEALAYKLPFVFVRRDYFN 311 (838)
Q Consensus 237 -~~ll~~l~~~~~~~vv~G~~~~~--lp~--nv~~~~~~~~~pdlLa~adl~It~gG~~Tv~Eal~~GvP~l~iP~~~~~ 311 (838)
.++++.+...+..+++..+..++ +-+ ++.+.+..-+..++|..||++||-|| ++..||+.+|+|+|.+- .+
T Consensus 201 ~~~ii~~L~~~~~~vV~ipr~~~~~~~~~~~~~~i~~~~vd~~~Ll~~a~l~Ig~gg-TMa~EAA~LGtPaIs~~---~g 276 (335)
T PF04007_consen 201 LPEIIEELEKYGRNVVIIPRYEDQRELFEKYGVIIPPEPVDGLDLLYYADLVIGGGG-TMAREAALLGTPAISCF---PG 276 (335)
T ss_pred HHHHHHHHHhhCceEEEecCCcchhhHHhccCccccCCCCCHHHHHHhcCEEEeCCc-HHHHHHHHhCCCEEEec---CC
Confidence 13333443333323333322222 111 23333221133489999999999655 88999999999999863 12
Q ss_pred ChHHHHHHHHHcCcEEEEecCCCChhhHHHHHHHHhhCCCCcc--CCCCHHHHHHHHHHHH
Q 003222 312 EEPFLRNMLEFYQGGVEMIRRDLLTGHWKPYLERAISLKPCYE--GGINGGEVAAHILQET 370 (838)
Q Consensus 312 EQ~~Na~~l~~~G~g~~l~~~~~~~~~l~~~l~~ll~~~~~~~--~~~~g~~~~a~~i~~~ 370 (838)
+....-++|.+.|. +....+ ++.+...+.+.+..+.... ...+-.+.+.+.|+++
T Consensus 277 ~~~~vd~~L~~~Gl--l~~~~~--~~ei~~~v~~~~~~~~~~~~~~~~d~~~~i~~~i~~~ 333 (335)
T PF04007_consen 277 KLLAVDKYLIEKGL--LYHSTD--PDEIVEYVRKNLGKRKKIREKKSEDPTDLIIEEIEEY 333 (335)
T ss_pred cchhHHHHHHHCCC--eEecCC--HHHHHHHHHHhhhcccchhhhhccCHHHHHHHHHHHh
Confidence 32234467888876 344334 3455556655554332221 1244455555555554
|
They are found in archaea and some bacteria and have no known function. |
| >TIGR03088 stp2 sugar transferase, PEP-CTERM/EpsH1 system associated | Back alignment and domain information |
|---|
Probab=99.02 E-value=4.2e-08 Score=110.26 Aligned_cols=295 Identities=16% Similarity=0.105 Sum_probs=157.2
Q ss_pred EEEEEeecCCCcccH-HHHHHHHHHHHHCCCeEEEEeCCCCcccccccCCCceeeeeeccCCCcccccccccChHHHHHH
Q 003222 16 LVFAYYVTGHGFGHA-TRVVEVVRNLISAGHDVHVVTGAPDFVFTSEIQSPRLFIRKVLLDCGAVQADALTVDRLASLEK 94 (838)
Q Consensus 16 ~~Il~~v~g~G~GHv-~r~laLA~~L~~~Gh~V~~v~~~~~~~~~~~i~~~~~~~~~~~~~~g~~~~~~~~~~~~~~l~~ 94 (838)
.+|++++.+.+.|.+ +-...++++|.++|+++++++......+...+...++.+.... .. ... .
T Consensus 2 ~~il~ii~~~~~GG~e~~~~~l~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~i~~~~~~------~~---~~~------~ 66 (374)
T TIGR03088 2 PLIVHVVYRFDVGGLENGLVNLINHLPADRYRHAVVALTEVSAFRKRIQRPDVAFYALH------KQ---PGK------D 66 (374)
T ss_pred ceEEEEeCCCCCCcHHHHHHHHHhhccccccceEEEEcCCCChhHHHHHhcCceEEEeC------CC---CCC------C
Confidence 567777877776666 5556999999999999988874322122221111122222210 00 000 0
Q ss_pred HHHHhhccHHHHHHHHHHHHhcCCCcEEEECC--CchHHHHHHHhCCcEEEEecCchhHHH-HhhhhhcccchHHHHHHH
Q 003222 95 YSETAVAPRKSILKDEVEWLNSIKADLVVSDV--VPVACRAAADAGIRSVCVTNFSWDFIY-AEYVMAAGHHHRSIVWQI 171 (838)
Q Consensus 95 ~~~~~~~~~~~~l~~~~~~L~~~kPDlVVsD~--~~~~~~aA~~lgIP~V~is~~~~~~i~-~~~~~~~~~~~~~i~~~l 171 (838)
+. ......+++++.+||+|.+.. ...+..++...++|...++..+|+... ..... ....+ ..+
T Consensus 67 ~~---------~~~~l~~~l~~~~~Divh~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~~~~----~~~~~-~~~ 132 (374)
T TIGR03088 67 VA---------VYPQLYRLLRQLRPDIVHTRNLAALEAQLPAALAGVPARIHGEHGRDVFDLDGSNW----KYRWL-RRL 132 (374)
T ss_pred hH---------HHHHHHHHHHHhCCCEEEEcchhHHHHHHHHHhcCCCeEEEeecCcccccchhhHH----HHHHH-HHH
Confidence 00 122335667889999999874 223445667778997555433321000 00000 00000 000
Q ss_pred HhhccccceEEecCCC--------CCCC-CCCceeecCcccccCCc---ChHHHHHHhCCCCCCcEEEEEcCCCCch---
Q 003222 172 AEDYSHCEFLIRLPGY--------CPMP-AFRDVIDVPLVVRRLHK---SRKEVRKELGIEDDVKLLILNFGGQPAG--- 236 (838)
Q Consensus 172 ~~~y~~~d~ll~~~~~--------~~~p-~~~~v~~ip~~~~~~~~---~~~~~r~~l~~~~~~~~Vlvs~Gs~~~~--- 236 (838)
.. ..++.++..... ...+ ....+++.|+......+ .+...++.... .+.+.++++.|.....
T Consensus 133 ~~--~~~~~~i~vs~~~~~~~~~~~~~~~~~~~vi~ngvd~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~vGrl~~~Kg~ 209 (374)
T TIGR03088 133 YR--PLIHHYVAVSRDLEDWLRGPVKVPPAKIHQIYNGVDTERFHPSRGDRSPILPPDFF-ADESVVVGTVGRLQAVKDQ 209 (374)
T ss_pred HH--hcCCeEEEeCHHHHHHHHHhcCCChhhEEEeccCccccccCCCccchhhhhHhhcC-CCCCeEEEEEecCCcccCH
Confidence 00 011111211000 0001 11123344443221111 12222222222 3456788888877652
Q ss_pred hhhHHh---hC---C---CCcEEEEeCCCCCC-----------CCCCeEECCCCCCHHHHHhhcCEEEec----CChhhH
Q 003222 237 WKLKEE---YL---P---SGWKCLVCGASDSQ-----------LPPNFIKLPKDAYTPDFMAASDCMLGK----IGYGTV 292 (838)
Q Consensus 237 ~~ll~~---l~---~---~~~~~vv~G~~~~~-----------lp~nv~~~~~~~~~pdlLa~adl~It~----gG~~Tv 292 (838)
..++++ +. + +++.++++|..... +..++.+.++.++++++|+.+|++|.- |-..++
T Consensus 210 ~~li~a~~~l~~~~~~~~~~~~l~i~G~g~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~adi~v~pS~~Eg~~~~~ 289 (374)
T TIGR03088 210 PTLVRAFALLVRQLPEGAERLRLVIVGDGPARGACEQMVRAAGLAHLVWLPGERDDVPALMQALDLFVLPSLAEGISNTI 289 (374)
T ss_pred HHHHHHHHHHHHhCcccccceEEEEecCCchHHHHHHHHHHcCCcceEEEcCCcCCHHHHHHhcCEEEeccccccCchHH
Confidence 122232 21 1 25788888865421 346688888888899999999999953 334689
Q ss_pred HHHHHcCCcEEEEeCCCCCChHHHHHHHHHcCcEEEEecCCCChhhHHHHHHHHhhCC
Q 003222 293 SEALAYKLPFVFVRRDYFNEEPFLRNMLEFYQGGVEMIRRDLLTGHWKPYLERAISLK 350 (838)
Q Consensus 293 ~Eal~~GvP~l~iP~~~~~EQ~~Na~~l~~~G~g~~l~~~~~~~~~l~~~l~~ll~~~ 350 (838)
.|||++|+|+|+.+... +.+.++....|..++..+ .+.+.++|.++++++
T Consensus 290 lEAma~G~Pvv~s~~~g------~~e~i~~~~~g~~~~~~d--~~~la~~i~~l~~~~ 339 (374)
T TIGR03088 290 LEAMASGLPVIATAVGG------NPELVQHGVTGALVPPGD--AVALARALQPYVSDP 339 (374)
T ss_pred HHHHHcCCCEEEcCCCC------cHHHhcCCCceEEeCCCC--HHHHHHHHHHHHhCH
Confidence 99999999999987433 334565666788887655 468899999988755
|
Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate. |
| >cd03823 GT1_ExpE7_like This family is most closely related to the GT1 family of glycosyltransferases | Back alignment and domain information |
|---|
Probab=99.02 E-value=5.1e-08 Score=107.26 Aligned_cols=121 Identities=18% Similarity=0.066 Sum_probs=85.3
Q ss_pred CCcEEEEEcCCCCch--h-hhHH---hhCCCCcEEEEeCCCCCC--------CCCCeEECCCC--CCHHHHHhhcCEEEe
Q 003222 222 DVKLLILNFGGQPAG--W-KLKE---EYLPSGWKCLVCGASDSQ--------LPPNFIKLPKD--AYTPDFMAASDCMLG 285 (838)
Q Consensus 222 ~~~~Vlvs~Gs~~~~--~-~ll~---~l~~~~~~~vv~G~~~~~--------lp~nv~~~~~~--~~~pdlLa~adl~It 285 (838)
+.+.++++.|+.... . .+++ .+..+++.++++|..... ...|+++.++. +.++++|+.+|++|.
T Consensus 189 ~~~~~i~~~G~~~~~k~~~~li~~~~~l~~~~~~l~i~G~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~ad~~i~ 268 (359)
T cd03823 189 GGRLRFGFIGQLTPHKGVDLLLEAFKRLPRGDIELVIVGNGLELEEESYELEGDPRVEFLGAYPQEEIDDFYAEIDVLVV 268 (359)
T ss_pred CCceEEEEEecCccccCHHHHHHHHHHHHhcCcEEEEEcCchhhhHHHHhhcCCCeEEEeCCCCHHHHHHHHHhCCEEEE
Confidence 455677788876542 2 2223 222246788888876532 24789988887 456689999999994
Q ss_pred c-----CChhhHHHHHHcCCcEEEEeCCCCCChHHHHHHHHHcCcEEEEecCCCChhhHHHHHHHHhhCC
Q 003222 286 K-----IGYGTVSEALAYKLPFVFVRRDYFNEEPFLRNMLEFYQGGVEMIRRDLLTGHWKPYLERAISLK 350 (838)
Q Consensus 286 ~-----gG~~Tv~Eal~~GvP~l~iP~~~~~EQ~~Na~~l~~~G~g~~l~~~~~~~~~l~~~l~~ll~~~ 350 (838)
. +...++.||+++|+|+|+.+.. .+.+.++..+.|..+...+ .+.+.+++.++++++
T Consensus 269 ps~~~e~~~~~~~Ea~a~G~Pvi~~~~~------~~~e~i~~~~~g~~~~~~d--~~~l~~~i~~l~~~~ 330 (359)
T cd03823 269 PSIWPENFPLVIREALAAGVPVIASDIG------GMAELVRDGVNGLLFPPGD--AEDLAAALERLIDDP 330 (359)
T ss_pred cCcccCCCChHHHHHHHCCCCEEECCCC------CHHHHhcCCCcEEEECCCC--HHHHHHHHHHHHhCh
Confidence 2 2334799999999999997632 2455667667898888766 478899999998765
|
ExpE7 in Sinorhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucans (exopolysaccharide II). |
| >PRK03188 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional | Back alignment and domain information |
|---|
Probab=99.01 E-value=7.7e-09 Score=112.93 Aligned_cols=104 Identities=15% Similarity=0.170 Sum_probs=77.3
Q ss_pred HHHHHHHHHHHHHhCCCCCCCEEEEEEeCCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhhhcCCCCC
Q 003222 611 AYVAGTILVLMTELGVRFEDSISMLVSSAVPEGKGVSSSASVEVASMSAIAAAHGLNIHPRDLALLCQKVENHIVGAPCG 690 (838)
Q Consensus 611 ~y~~g~i~~~~~~~g~~~~~g~~i~i~s~iP~g~GLgSSAA~~va~~~al~~l~~~~l~~~ela~~a~~~E~~~~G~~~G 690 (838)
|.+..++..+++..|.. .|++|.|.++||.++|||||||..+|++.|++.++|.++++++++++|.++|
T Consensus 65 nl~~~~~~~~~~~~~~~--~~~~I~i~s~IP~~~GLGSSSA~a~A~l~al~~~~g~~ls~~el~~~a~~ig--------- 133 (300)
T PRK03188 65 NLAWRAAELLAEHVGRA--PDVHLHIDKGIPVAGGMAGGSADAAAALVACDALWGLGLSRDELLELAAELG--------- 133 (300)
T ss_pred cHHHHHHHHHHHHhCCC--CCeEEEEEcCCcccCcchHHHHHHHHHHHHHHHHhCCCcCHHHHHHHHHHhC---------
Confidence 45555566666677753 6899999999999999999999999999999999999999999999998764
Q ss_pred hhhHHHhhcCCCCeEEEEEecCCceeeeeccCCCeEEEEE
Q 003222 691 VMDQMASACGEANKLLAMVCQPAELLGVVEIPSHIRFWGI 730 (838)
Q Consensus 691 ~mDq~a~~~G~~~~~l~~d~~~~~~~~~v~~~~~~~~vi~ 730 (838)
.|..++.+||. ++. ....+...++..+.++.++++
T Consensus 134 -~dv~~~~~GG~---~~~-~~~g~~~~~~~~~~~~~~~lv 168 (300)
T PRK03188 134 -SDVPFALLGGT---ALG-TGRGEQLAPVLARGTFHWVLA 168 (300)
T ss_pred -CCcchhhcCCe---EEE-EecCCEEEECCCCCCcEEEEE
Confidence 36667889983 333 333333344444334444443
|
|
| >TIGR00144 beta_RFAP_syn beta-RFAP synthase | Back alignment and domain information |
|---|
Probab=99.00 E-value=1.2e-08 Score=112.20 Aligned_cols=111 Identities=14% Similarity=0.227 Sum_probs=85.0
Q ss_pred hHHHHHHHHHHHHHhCCCCCCCEEEEEEeCCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhhhcCCCC
Q 003222 610 AAYVAGTILVLMTELGVRFEDSISMLVSSAVPEGKGVSSSASVEVASMSAIAAAHGLNIHPRDLALLCQKVENHIVGAPC 689 (838)
Q Consensus 610 ~~y~~g~i~~~~~~~g~~~~~g~~i~i~s~iP~g~GLgSSAA~~va~~~al~~l~~~~l~~~ela~~a~~~E~~~~G~~~ 689 (838)
.|.+..++..+++..|. .|+++.|.++||.++|||||||+.+|.+.|++.+++.+++++++++++.+.| .+
T Consensus 64 ~n~~~~~~~~~~~~~g~---~~~~i~i~~~IP~~~GLGSsaa~avA~~~a~~~l~~~~ls~~el~~~a~~ge------~s 134 (324)
T TIGR00144 64 RSRIMEAARKTLKHIGS---EGFHFTVRSMFPAHSGLGSGTQLSLAVGRLVSEYYGMKFTAREIAHIVGRGG------TS 134 (324)
T ss_pred HHHHHHHHHHHHHHhCC---CCEEEEEeecCCCccCccHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHhCCC------CC
Confidence 55666666667766663 4899999999999999999999999999999999999999999999998544 55
Q ss_pred ChhhHHHhhcCCCCeEEEEEe----c--------------CCceeeeeccCCCeEEEEEeCCCC
Q 003222 690 GVMDQMASACGEANKLLAMVC----Q--------------PAELLGVVEIPSHIRFWGIDSGIR 735 (838)
Q Consensus 690 G~mDq~a~~~G~~~~~l~~d~----~--------------~~~~~~~v~~~~~~~~vi~~s~~~ 735 (838)
| .|.+++.+||. .++. . +.....++++| ++.++++--+..
T Consensus 135 ~-~~va~~~~GG~----vv~~G~~~~~~~~~~~~~~~~~~~~~~~~r~~~p-~~~~vlviP~~~ 192 (324)
T TIGR00144 135 G-IGVASFEDGGF----IVDGGHSSKEKSDFLPSSASSAKPAPVIARYDFP-DWNIILAIPEID 192 (324)
T ss_pred c-cceeeeeeCCE----EEECCcccccccccCcccccCCCCCCeEEecCCC-CcEEEEEecCCC
Confidence 5 46788999993 3331 1 11122355666 888888765544
|
This protein family contains several archaeal examples of beta-ribofuranosylaminobenzene 5-prime-phosphate synthase (beta-RFAP synthase), an enzyme involved in methanopterin biosynthesis. In some species, two members of this family are found. It is unclear whether both act as beta-RFAP synthase. This family is related to the GHMP kinases (Galactokinase, Homoserine kinase, Mevalonate kinase, Phosphomevalonate kinase). Members are found so far only in the Archaea and in Methylobacterium extorquens. |
| >PRK14614 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional | Back alignment and domain information |
|---|
Probab=98.98 E-value=8.4e-09 Score=111.36 Aligned_cols=112 Identities=15% Similarity=0.143 Sum_probs=85.3
Q ss_pred HHHHHHHHHHHHHhCCCCCCCEEEEEEeCCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhhhcCCCCC
Q 003222 611 AYVAGTILVLMTELGVRFEDSISMLVSSAVPEGKGVSSSASVEVASMSAIAAAHGLNIHPRDLALLCQKVENHIVGAPCG 690 (838)
Q Consensus 611 ~y~~g~i~~~~~~~g~~~~~g~~i~i~s~iP~g~GLgSSAA~~va~~~al~~l~~~~l~~~ela~~a~~~E~~~~G~~~G 690 (838)
|.+.-++..+++..|.. .|+++.|.++||.++|||||||..+|++.+++.+++.+++++++.++|... |
T Consensus 67 nl~~~a~~~~~~~~~~~--~~~~i~i~~~IP~~~GLGsssa~~~a~~~al~~~~~~~l~~~~l~~~a~~~---------G 135 (280)
T PRK14614 67 NIAWRAADALLDLSGRE--VGIDISITKNIPVAAGLGGGSSDAATVLMGVNELLGLGLSDERLMEIGVKL---------G 135 (280)
T ss_pred cHHHHHHHHHHHHhCCC--CceEEEEEecCCCcCccHHHHHHHHHHHHHHHHHhCCCcCHHHHHHHHHHh---------C
Confidence 55544556666666653 589999999999999999999999999999999999999999999999754 3
Q ss_pred hhhHHHhhcCCCCeEEEEEecCCceeeeeccCCCeEEEEEeCCCCCcC
Q 003222 691 VMDQMASACGEANKLLAMVCQPAELLGVVEIPSHIRFWGIDSGIRHSV 738 (838)
Q Consensus 691 ~mDq~a~~~G~~~~~l~~d~~~~~~~~~v~~~~~~~~vi~~s~~~~~~ 738 (838)
.|...+.+||. .+. ....+...+++.+.+..++++++++.-++
T Consensus 136 -~Dv~~~l~gg~---~~~-~g~ge~~~~l~~~~~~~ivl~~p~~~~sT 178 (280)
T PRK14614 136 -ADVPFFIFKKT---ALA-EGIGDKLTAVEGVPPLWVVLVNPGLHVST 178 (280)
T ss_pred -CCcceeeeCCc---EEE-EEcCceeEECCCCCCcEEEEECCCCCCCH
Confidence 37767788873 222 22233334555445677899999887764
|
|
| >cd03819 GT1_WavL_like This family is most closely related to the GT1 family of glycosyltransferases | Back alignment and domain information |
|---|
Probab=98.98 E-value=1.1e-07 Score=105.52 Aligned_cols=278 Identities=17% Similarity=0.108 Sum_probs=148.4
Q ss_pred cccHHHHHHHHHHHHHCCCeEEEEeCCCCcccccccCCCceeeeeeccCCCcccccccccChHHHHHHHHHHhhccHHHH
Q 003222 27 FGHATRVVEVVRNLISAGHDVHVVTGAPDFVFTSEIQSPRLFIRKVLLDCGAVQADALTVDRLASLEKYSETAVAPRKSI 106 (838)
Q Consensus 27 ~GHv~r~laLA~~L~~~Gh~V~~v~~~~~~~~~~~i~~~~~~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 106 (838)
.|--..+..++++|.++||+|++++..... ...+...++.+..... ..... +..+ ..
T Consensus 10 gG~e~~~~~l~~~L~~~g~~v~v~~~~~~~--~~~~~~~~~~~~~~~~---------~~~~~---~~~~---------~~ 66 (355)
T cd03819 10 GGVERGTLELARALVERGHRSLVASAGGRL--VAELEAEGSRHIKLPF---------ISKNP---LRIL---------LN 66 (355)
T ss_pred CcHHHHHHHHHHHHHHcCCEEEEEcCCCch--HHHHHhcCCeEEEccc---------cccch---hhhH---------HH
Confidence 466667789999999999999999764321 1111111222221100 00000 0000 01
Q ss_pred HHHHHHHHhcCCCcEEEECCC---chHHHHHHHhCCcEEEEecCchh-H-HHHhhhhhccc---chHHHHHHHHhhcccc
Q 003222 107 LKDEVEWLNSIKADLVVSDVV---PVACRAAADAGIRSVCVTNFSWD-F-IYAEYVMAAGH---HHRSIVWQIAEDYSHC 178 (838)
Q Consensus 107 l~~~~~~L~~~kPDlVVsD~~---~~~~~aA~~lgIP~V~is~~~~~-~-i~~~~~~~~~~---~~~~i~~~l~~~y~~~ 178 (838)
......++++.+||+|+.+.. +.+.++++..++|.+...+-.|. . .+......... .-+.+.+.+...+...
T Consensus 67 ~~~l~~~~~~~~~dii~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~vi~~s~~~~~~~~~~~~~~ 146 (355)
T cd03819 67 VARLRRLIREEKVDIVHARSRAPAWSAYLAARRTRPPFVTTVHGFYSVNFRYNAIMARGDRVIAVSNFIADHIRENYGVD 146 (355)
T ss_pred HHHHHHHHHHcCCCEEEECCCchhHHHHHHHHhcCCCEEEEeCCchhhHHHHHHHHHhcCEEEEeCHHHHHHHHHhcCCC
Confidence 223355678899999998752 23445567779998865332221 1 11110000000 0011111111111100
Q ss_pred ceEEecCCCCCCCCCCceeecCccccc--C-CcChH---HHHHHhCCCCCCcEEEEEcCCCCch---hhhHH---hhCC-
Q 003222 179 EFLIRLPGYCPMPAFRDVIDVPLVVRR--L-HKSRK---EVRKELGIEDDVKLLILNFGGQPAG---WKLKE---EYLP- 245 (838)
Q Consensus 179 d~ll~~~~~~~~p~~~~v~~ip~~~~~--~-~~~~~---~~r~~l~~~~~~~~Vlvs~Gs~~~~---~~ll~---~l~~- 245 (838)
+....+++.|+.... + ...+. .+++.++.+ +...++++.|..... ..+++ .+..
T Consensus 147 ------------~~k~~~i~ngi~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~Gr~~~~Kg~~~li~~~~~l~~~ 213 (355)
T cd03819 147 ------------PDRIRVIPRGVDLDRFDPGAVPPERILALAREWPLP-KGKPVILLPGRLTRWKGQEVFIEALARLKKD 213 (355)
T ss_pred ------------hhhEEEecCCccccccCccccchHHHHHHHHHcCCC-CCceEEEEeeccccccCHHHHHHHHHHHHhc
Confidence 001122222321111 1 11111 245666654 444567777876542 22332 3332
Q ss_pred -CCcEEEEeCCCCCC---------------CCCCeEECCCCCCHHHHHhhcCEEEecC-----ChhhHHHHHHcCCcEEE
Q 003222 246 -SGWKCLVCGASDSQ---------------LPPNFIKLPKDAYTPDFMAASDCMLGKI-----GYGTVSEALAYKLPFVF 304 (838)
Q Consensus 246 -~~~~~vv~G~~~~~---------------lp~nv~~~~~~~~~pdlLa~adl~It~g-----G~~Tv~Eal~~GvP~l~ 304 (838)
+++.++++|..... +.+||+++++.+.++++|+.||++|.-+ ..+++.||+++|+|+|+
T Consensus 214 ~~~~~l~ivG~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~l~~ad~~i~ps~~~e~~~~~l~EA~a~G~PvI~ 293 (355)
T cd03819 214 DPDVHLLIVGDAQGRRFYYAELLELIKRLGLQDRVTFVGHCSDMPAAYALADIVVSASTEPEAFGRTAVEAQAMGRPVIA 293 (355)
T ss_pred CCCeEEEEEECCcccchHHHHHHHHHHHcCCcceEEEcCCcccHHHHHHhCCEEEecCCCCCCCchHHHHHHhcCCCEEE
Confidence 56788888865421 3568999999888899999999999754 23689999999999999
Q ss_pred EeCCCCCChHHHHHHHHHcCcEEEEecCCCChhhHHHHHHHHhh
Q 003222 305 VRRDYFNEEPFLRNMLEFYQGGVEMIRRDLLTGHWKPYLERAIS 348 (838)
Q Consensus 305 iP~~~~~EQ~~Na~~l~~~G~g~~l~~~~~~~~~l~~~l~~ll~ 348 (838)
..... ..+.+...+.|..++..+ .+.+.++|.+++.
T Consensus 294 ~~~~~------~~e~i~~~~~g~~~~~~~--~~~l~~~i~~~~~ 329 (355)
T cd03819 294 SDHGG------ARETVRPGETGLLVPPGD--AEALAQALDQILS 329 (355)
T ss_pred cCCCC------cHHHHhCCCceEEeCCCC--HHHHHHHHHHHHh
Confidence 76432 234455556788887655 4678888866654
|
WavL in Vibrio cholerae has been shown to be involved in the biosynthesis of the lipopolysaccharide core. |
| >cd03812 GT1_CapH_like This family is most closely related to the GT1 family of glycosyltransferases | Back alignment and domain information |
|---|
Probab=98.97 E-value=9.6e-08 Score=105.98 Aligned_cols=129 Identities=23% Similarity=0.174 Sum_probs=88.0
Q ss_pred HHHhCCCCCCcEEEEEcCCCCch--hh-hHH---hhC--CCCcEEEEeCCCCCC-----------CCCCeEECCCCCCHH
Q 003222 214 RKELGIEDDVKLLILNFGGQPAG--WK-LKE---EYL--PSGWKCLVCGASDSQ-----------LPPNFIKLPKDAYTP 274 (838)
Q Consensus 214 r~~l~~~~~~~~Vlvs~Gs~~~~--~~-ll~---~l~--~~~~~~vv~G~~~~~-----------lp~nv~~~~~~~~~p 274 (838)
++..+.. +.+.++++.|+.... .+ +++ .+. .+++.++++|..... ++++|+..++.+.++
T Consensus 183 ~~~~~~~-~~~~~i~~vGr~~~~Kg~~~li~a~~~l~~~~~~~~l~ivG~g~~~~~~~~~~~~~~~~~~v~~~g~~~~~~ 261 (358)
T cd03812 183 RRELGIL-EDKFVIGHVGRFSEQKNHEFLIEIFAELLKKNPNAKLLLVGDGELEEEIKKKVKELGLEDKVIFLGVRNDVP 261 (358)
T ss_pred HHHcCCC-CCCEEEEEEeccccccChHHHHHHHHHHHHhCCCeEEEEEeCCchHHHHHHHHHhcCCCCcEEEecccCCHH
Confidence 4444544 445677888877653 22 222 232 256788888865421 467899999877889
Q ss_pred HHHhhcCEEEec----CChhhHHHHHHcCCcEEEEeCCCCCChHHHHHHHHHcCcEEEEecCCCChhhHHHHHHHHhhCC
Q 003222 275 DFMAASDCMLGK----IGYGTVSEALAYKLPFVFVRRDYFNEEPFLRNMLEFYQGGVEMIRRDLLTGHWKPYLERAISLK 350 (838)
Q Consensus 275 dlLa~adl~It~----gG~~Tv~Eal~~GvP~l~iP~~~~~EQ~~Na~~l~~~G~g~~l~~~~~~~~~l~~~l~~ll~~~ 350 (838)
++++.||++|.. +-.++++|||++|+|+|+.......| .++. +.+......+ ++.+.++|.++++++
T Consensus 262 ~~~~~adi~v~ps~~E~~~~~~lEAma~G~PvI~s~~~~~~~------~i~~-~~~~~~~~~~--~~~~a~~i~~l~~~~ 332 (358)
T cd03812 262 ELLQAMDVFLFPSLYEGLPLVLIEAQASGLPCILSDTITKEV------DLTD-LVKFLSLDES--PEIWAEEILKLKSED 332 (358)
T ss_pred HHHHhcCEEEecccccCCCHHHHHHHHhCCCEEEEcCCchhh------hhcc-CccEEeCCCC--HHHHHHHHHHHHhCc
Confidence 999999999964 23468999999999999987544333 3444 5554444333 579999999999887
Q ss_pred CC
Q 003222 351 PC 352 (838)
Q Consensus 351 ~~ 352 (838)
..
T Consensus 333 ~~ 334 (358)
T cd03812 333 RR 334 (358)
T ss_pred ch
Confidence 54
|
capH in Staphylococcus aureus has been shown to be required for the biosynthesis of the type 1 capsular polysaccharide (CP1). |
| >cd03807 GT1_WbnK_like This family is most closely related to the GT1 family of glycosyltransferases | Back alignment and domain information |
|---|
Probab=98.97 E-value=1.4e-07 Score=103.56 Aligned_cols=130 Identities=20% Similarity=0.182 Sum_probs=88.5
Q ss_pred hHHHHHHhCCCCCCcEEEEEcCCCCch---hhhHHh---hC--CCCcEEEEeCCCCCC------------CCCCeEECCC
Q 003222 210 RKEVRKELGIEDDVKLLILNFGGQPAG---WKLKEE---YL--PSGWKCLVCGASDSQ------------LPPNFIKLPK 269 (838)
Q Consensus 210 ~~~~r~~l~~~~~~~~Vlvs~Gs~~~~---~~ll~~---l~--~~~~~~vv~G~~~~~------------lp~nv~~~~~ 269 (838)
+...++.+++++ ...+++++|+.... ..+++. +. .+++.++++|..... ++.++.+.+.
T Consensus 180 ~~~~~~~~~~~~-~~~~i~~~G~~~~~K~~~~li~a~~~l~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~~v~~~g~ 258 (365)
T cd03807 180 RARLREELGLPE-DTFLIGIVARLHPQKDHATLLRAAALLLKKFPNARLLLVGDGPDRANLELLALKELGLEDKVILLGE 258 (365)
T ss_pred hHHHHHhcCCCC-CCeEEEEecccchhcCHHHHHHHHHHHHHhCCCeEEEEecCCcchhHHHHHHHHhcCCCceEEEccc
Confidence 344566777764 44567788876652 223332 22 246778888865421 3567888887
Q ss_pred CCCHHHHHhhcCEEEecCC----hhhHHHHHHcCCcEEEEeCCCCCChHHHHHHHHHcCcEEEEecCCCChhhHHHHHHH
Q 003222 270 DAYTPDFMAASDCMLGKIG----YGTVSEALAYKLPFVFVRRDYFNEEPFLRNMLEFYQGGVEMIRRDLLTGHWKPYLER 345 (838)
Q Consensus 270 ~~~~pdlLa~adl~It~gG----~~Tv~Eal~~GvP~l~iP~~~~~EQ~~Na~~l~~~G~g~~l~~~~~~~~~l~~~l~~ 345 (838)
.+.++++|+.||++|..+. .+++.||+++|+|+|+.+... +.+.+.+ .|..++..+ .+.+..+|.+
T Consensus 259 ~~~~~~~~~~adi~v~ps~~e~~~~~~~Ea~a~g~PvI~~~~~~------~~e~~~~--~g~~~~~~~--~~~l~~~i~~ 328 (365)
T cd03807 259 RSDVPALLNALDVFVLSSLSEGFPNVLLEAMACGLPVVATDVGD------NAELVGD--TGFLVPPGD--PEALAEAIEA 328 (365)
T ss_pred cccHHHHHHhCCEEEeCCccccCCcHHHHHHhcCCCEEEcCCCC------hHHHhhc--CCEEeCCCC--HHHHHHHHHH
Confidence 7888999999999997543 368999999999999976432 2334444 566676555 5788999999
Q ss_pred HhhCC
Q 003222 346 AISLK 350 (838)
Q Consensus 346 ll~~~ 350 (838)
+++++
T Consensus 329 l~~~~ 333 (365)
T cd03807 329 LLADP 333 (365)
T ss_pred HHhCh
Confidence 98765
|
WbnK in Shigella dysenteriae has been shown to be involved in the type 7 O-antigen biosynthesis. |
| >PRK14609 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional | Back alignment and domain information |
|---|
Probab=98.97 E-value=8.7e-09 Score=110.37 Aligned_cols=114 Identities=11% Similarity=0.168 Sum_probs=87.2
Q ss_pred ChhHHHHHHHHHHHHHhCCCCCCCEEEEEEeCCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhhhcCC
Q 003222 608 KWAAYVAGTILVLMTELGVRFEDSISMLVSSAVPEGKGVSSSASVEVASMSAIAAAHGLNIHPRDLALLCQKVENHIVGA 687 (838)
Q Consensus 608 ~w~~y~~g~i~~~~~~~g~~~~~g~~i~i~s~iP~g~GLgSSAA~~va~~~al~~l~~~~l~~~ela~~a~~~E~~~~G~ 687 (838)
.|.|++..++..+.+..+ . .|++|.+.++||.|+|||||||..+|++.+++.+++.+++..+++++|.+.
T Consensus 62 ~~~Nlv~~a~~~~~~~~~--~-~~~~i~i~k~IP~~aGLGssss~aaa~l~al~~~~~~~l~~~~l~~la~~i------- 131 (269)
T PRK14609 62 PEDNLVVKAYNLLKKDFP--L-PPVHIHLYKHIPIGAGLGGGSSDAAFMLKLLNDKFNLGLSDEELEAYAATL------- 131 (269)
T ss_pred ccccHHHHHHHHHHHHcC--C-CCeEEEEecCCCCCCcccHHHHHHHHHHHHHHHHhCCCcCHHHHHHHHHHh-------
Confidence 467888887777766555 3 489999999999999999999999999999999999999999999999966
Q ss_pred CCChhhHHHhhcCCCCeEEEEEecCCceeeeeccC-CCeEEEEEeCCCCCcC
Q 003222 688 PCGVMDQMASACGEANKLLAMVCQPAELLGVVEIP-SHIRFWGIDSGIRHSV 738 (838)
Q Consensus 688 ~~G~mDq~a~~~G~~~~~l~~d~~~~~~~~~v~~~-~~~~~vi~~s~~~~~~ 738 (838)
| +|...+..|+. + +.... .+...+++.+ .++.++++++++.-++
T Consensus 132 --G-aDvpffl~g~~--a-~~~G~-Ge~l~~l~~~~~~~~~vlv~P~~~~sT 176 (269)
T PRK14609 132 --G-ADCAFFIRNKP--V-YATGI-GDIFSPIDLSLSGYYIALVKPDIHVST 176 (269)
T ss_pred --C-CCceEEccCCC--E-EEEEe-CCeeEECCCCCCCCEEEEECCCCCCCh
Confidence 3 47666666763 2 22222 2333555432 4667899988877654
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.94 E-value=2e-07 Score=111.62 Aligned_cols=121 Identities=9% Similarity=0.002 Sum_probs=85.2
Q ss_pred CcEEEEEcCCCCc--hh-hhHHh---hC--CCCcEEEEeCCCCCC-----------CCCCeEECCCCCCHHHHHhhcCEE
Q 003222 223 VKLLILNFGGQPA--GW-KLKEE---YL--PSGWKCLVCGASDSQ-----------LPPNFIKLPKDAYTPDFMAASDCM 283 (838)
Q Consensus 223 ~~~Vlvs~Gs~~~--~~-~ll~~---l~--~~~~~~vv~G~~~~~-----------lp~nv~~~~~~~~~pdlLa~adl~ 283 (838)
...++++.|.... +. .++++ +. .+++.++++|..... +.++|++.++.++++.+|+.+|+|
T Consensus 516 ~~~vIg~VGRL~~~KG~~~LI~A~a~l~~~~p~~~LvIvG~G~~~~~L~~l~~~lgL~~~V~flG~~~dv~~ll~aaDv~ 595 (694)
T PRK15179 516 ARFTVGTVMRVDDNKRPFLWVEAAQRFAASHPKVRFIMVGGGPLLESVREFAQRLGMGERILFTGLSRRVGYWLTQFNAF 595 (694)
T ss_pred CCeEEEEEEeCCccCCHHHHHHHHHHHHHHCcCeEEEEEccCcchHHHHHHHHHcCCCCcEEEcCCcchHHHHHHhcCEE
Confidence 3456667776554 22 23333 22 256888888865421 457899999999999999999999
Q ss_pred Eec---CC-hhhHHHHHHcCCcEEEEeCCCCCChHHHHHHHHHcCcEEEEecCCCChhhHHHHHHHHhhC
Q 003222 284 LGK---IG-YGTVSEALAYKLPFVFVRRDYFNEEPFLRNMLEFYQGGVEMIRRDLLTGHWKPYLERAISL 349 (838)
Q Consensus 284 It~---gG-~~Tv~Eal~~GvP~l~iP~~~~~EQ~~Na~~l~~~G~g~~l~~~~~~~~~l~~~l~~ll~~ 349 (838)
|.- -| .+++.|||++|+|+|+....+ +.+.++....|+.++..+.+++.|.++|.+++.+
T Consensus 596 VlpS~~Egfp~vlLEAMA~G~PVVat~~gG------~~EiV~dg~~GlLv~~~d~~~~~La~aL~~ll~~ 659 (694)
T PRK15179 596 LLLSRFEGLPNVLIEAQFSGVPVVTTLAGG------AGEAVQEGVTGLTLPADTVTAPDVAEALARIHDM 659 (694)
T ss_pred EeccccccchHHHHHHHHcCCeEEEECCCC------hHHHccCCCCEEEeCCCCCChHHHHHHHHHHHhC
Confidence 962 33 358999999999999987432 3345666667999987776666788888887754
|
|
| >PRK14612 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional | Back alignment and domain information |
|---|
Probab=98.93 E-value=2e-08 Score=108.32 Aligned_cols=164 Identities=18% Similarity=0.228 Sum_probs=108.8
Q ss_pred EEEcccccccc----ccccc-cCCCeeeccccccceEEEEEEcCCccchhhhhhhhccCCCCCCCCCeEEEEecccccCC
Q 003222 499 VARAPGRLDVM----GGIAD-YSGSLVLQMPIREACHVALQKISPSKQRLWKHALARHNDKGQGPMPVLQIVSYGSELSN 573 (838)
Q Consensus 499 ~~~APGRv~L~----GeH~D-y~gg~vl~~ai~~~~~v~~~~~~d~~~~l~~~~~~~~~~~~~~~~~~i~i~s~~~~~~~ 573 (838)
.++||++|||+ |---| |+.--.+-.+|+++-.+.+.+.+++ +++...+
T Consensus 4 ~~~a~aKiNl~L~i~~~~~dgyH~l~sl~~al~l~d~v~i~~~~~~----------------------~~i~~~~----- 56 (276)
T PRK14612 4 ERLAPAKVNLGLSVLGRREDGYHELHTLMVPLDVGDRLEVEPIASG----------------------LELRVLG----- 56 (276)
T ss_pred EEeeCcEEeeccccCCCCCCCCceeEEEEEECCCCCEEEEEECCCc----------------------EEEEcCC-----
Confidence 35899999985 55555 7777888889998888877764321 1121000
Q ss_pred CCCceeccCCccccCCCCcchhhhhcccCCCCCCChhHHHHHHHHHHHHHhCCCCCCCEEEEEEeCCCCCCCCChHHHHH
Q 003222 574 RGPTFDMDLSDFMDEGKPMSYEKAKKYFDTNPSQKWAAYVAGTILVLMTELGVRFEDSISMLVSSAVPEGKGVSSSASVE 653 (838)
Q Consensus 574 ~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~~~~~~w~~y~~g~i~~~~~~~g~~~~~g~~i~i~s~iP~g~GLgSSAA~~ 653 (838)
..++. +..|.+.-++..+++..|.. .|++|.+.++||+|+|||||||..
T Consensus 57 ----~~~p~-------------------------~~~Nli~ka~~~~~~~~g~~--~~~~I~i~k~IP~~~GLGssSa~a 105 (276)
T PRK14612 57 ----ADLPT-------------------------DERNLVYRAARAYLDAAGQP--GGVRITLEKRLPLAAGLGGGSSDA 105 (276)
T ss_pred ----CCCCC-------------------------CCcccHHHHHHHHHHHhCCC--CCeEEEEEecCCCcCCCchHHHHH
Confidence 00010 11344544456666677753 599999999999999999999999
Q ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHhhhcCCCCChhhHHHhhcCCCCeEEEEEecCCceeeeeccCCCeEEEEEeCC
Q 003222 654 VASMSAIAAAHGLNIHPRDLALLCQKVENHIVGAPCGVMDQMASACGEANKLLAMVCQPAELLGVVEIPSHIRFWGIDSG 733 (838)
Q Consensus 654 va~~~al~~l~~~~l~~~ela~~a~~~E~~~~G~~~G~mDq~a~~~G~~~~~l~~d~~~~~~~~~v~~~~~~~~vi~~s~ 733 (838)
+|++.+++.+++.+++.. +++...| .|...+.+||. .+...+ .+...+++.+ .+.++|+..+
T Consensus 106 aa~l~al~~l~~~~l~l~---~ia~~~g----------~dv~~~~~GG~---~~~~g~-g~~~~~l~~~-~~~~vv~~P~ 167 (276)
T PRK14612 106 AATLLALAQLYPAPVDLP---ALALTLG----------ADVPFFLLGGA---AEARGV-GERLTPLELP-PVPLVLVNPG 167 (276)
T ss_pred HHHHHHHHHHhCCChHHH---HHHHHhC----------CCcCeeeeCCe---EEEEec-CccceEcCCC-CcEEEEECCC
Confidence 999999999999877544 4444332 27677888884 222222 2223455543 6778999988
Q ss_pred CCCcC
Q 003222 734 IRHSV 738 (838)
Q Consensus 734 ~~~~~ 738 (838)
+..++
T Consensus 168 ~~~sT 172 (276)
T PRK14612 168 VAVSA 172 (276)
T ss_pred CCCCH
Confidence 87753
|
|
| >cd03801 GT1_YqgM_like This family is most closely related to the GT1 family of glycosyltransferases and named after YqgM in Bacillus licheniformis about which little is known | Back alignment and domain information |
|---|
Probab=98.93 E-value=1.8e-07 Score=102.18 Aligned_cols=293 Identities=18% Similarity=0.047 Sum_probs=152.4
Q ss_pred CcccHHHHHHHHHHHHHCCCeEEEEeCCCCcccccccCCCceeeeeeccCCCcccccccccChHHHHHHHHHHhhccHHH
Q 003222 26 GFGHATRVVEVVRNLISAGHDVHVVTGAPDFVFTSEIQSPRLFIRKVLLDCGAVQADALTVDRLASLEKYSETAVAPRKS 105 (838)
Q Consensus 26 G~GHv~r~laLA~~L~~~Gh~V~~v~~~~~~~~~~~i~~~~~~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 105 (838)
+.|+..++..++++|.+.||+|++++............. . ... ... . ...... . ... ...
T Consensus 13 ~~G~~~~~~~l~~~L~~~g~~v~i~~~~~~~~~~~~~~~-~--~~~--~~~--~---~~~~~~---~-~~~------~~~ 72 (374)
T cd03801 13 VGGAERHVLELARALAARGHEVTVLTPGDGGLPDEEEVG-G--IVV--VRP--P---PLLRVR---R-LLL------LLL 72 (374)
T ss_pred cCcHhHHHHHHHHHHHhcCceEEEEecCCCCCCceeeec-C--cce--ecC--C---cccccc---h-hHH------HHH
Confidence 479999999999999999999999987542211110000 0 000 000 0 000000 0 000 001
Q ss_pred HHHHHHHHHhcCCCcEEEECCCchHH---HHHHHhCCcEEEEecCchhHHHHhhhhhcccchHHHHHHHHhhccccceEE
Q 003222 106 ILKDEVEWLNSIKADLVVSDVVPVAC---RAAADAGIRSVCVTNFSWDFIYAEYVMAAGHHHRSIVWQIAEDYSHCEFLI 182 (838)
Q Consensus 106 ~l~~~~~~L~~~kPDlVVsD~~~~~~---~aA~~lgIP~V~is~~~~~~i~~~~~~~~~~~~~~i~~~l~~~y~~~d~ll 182 (838)
.......++++.+||+|+........ .++...++|.+...+-.+....... .. .............+..++.++
T Consensus 73 ~~~~~~~~~~~~~~Dii~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~~-~~--~~~~~~~~~~~~~~~~~d~~i 149 (374)
T cd03801 73 LALRLRRLLRRERFDVVHAHDWLALLAAALAARLLGIPLVLTVHGLEFGRPGNE-LG--LLLKLARALERRALRRADRII 149 (374)
T ss_pred HHHHHHHHhhhcCCcEEEEechhHHHHHHHHHHhcCCcEEEEeccchhhccccc-hh--HHHHHHHHHHHHHHHhCCEEE
Confidence 12233556788899999987633322 3567779998765321111000000 00 000000000111222233333
Q ss_pred ecCCC--------CCCC-CCCceeecCcccccCCcChHHHHHHhCCCCCCcEEEEEcCCCCch---hhhHHh---hCC--
Q 003222 183 RLPGY--------CPMP-AFRDVIDVPLVVRRLHKSRKEVRKELGIEDDVKLLILNFGGQPAG---WKLKEE---YLP-- 245 (838)
Q Consensus 183 ~~~~~--------~~~p-~~~~v~~ip~~~~~~~~~~~~~r~~l~~~~~~~~Vlvs~Gs~~~~---~~ll~~---l~~-- 245 (838)
..... ...+ ....+++.|.........+...+...... ....+++++|+.... ..+++. +..
T Consensus 150 ~~s~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~g~~~~~k~~~~~i~~~~~~~~~~ 228 (374)
T cd03801 150 AVSEATREELRELGGVPPEKITVIPNGVDTERFRPAPRAARRRLGIP-EDEPVILFVGRLVPRKGVDLLLEALAKLRKEY 228 (374)
T ss_pred EecHHHHHHHHhcCCCCCCcEEEecCcccccccCccchHHHhhcCCc-CCCeEEEEecchhhhcCHHHHHHHHHHHhhhc
Confidence 21110 0000 11112222221111111112233333333 344567788876542 223332 222
Q ss_pred CCcEEEEeCCCCC-----------CCCCCeEECCCC--CCHHHHHhhcCEEEec----CChhhHHHHHHcCCcEEEEeCC
Q 003222 246 SGWKCLVCGASDS-----------QLPPNFIKLPKD--AYTPDFMAASDCMLGK----IGYGTVSEALAYKLPFVFVRRD 308 (838)
Q Consensus 246 ~~~~~vv~G~~~~-----------~lp~nv~~~~~~--~~~pdlLa~adl~It~----gG~~Tv~Eal~~GvP~l~iP~~ 308 (838)
+++.++++|.... ..+.||.+.++. +.+.++|..||++|.- +..+++.||+++|+|+|+.+..
T Consensus 229 ~~~~l~i~G~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~~di~i~~~~~~~~~~~~~Ea~~~g~pvI~~~~~ 308 (374)
T cd03801 229 PDVRLVIVGDGPLREELEALAAELGLGDRVTFLGFVPDEDLPALYAAADVFVLPSLYEGFGLVLLEAMAAGLPVVASDVG 308 (374)
T ss_pred CCeEEEEEeCcHHHHHHHHHHHHhCCCcceEEEeccChhhHHHHHHhcCEEEecchhccccchHHHHHHcCCcEEEeCCC
Confidence 3577888885431 146789888887 5677999999999953 3456899999999999998753
Q ss_pred CCCChHHHHHHHHHcCcEEEEecCCCChhhHHHHHHHHhhCC
Q 003222 309 YFNEEPFLRNMLEFYQGGVEMIRRDLLTGHWKPYLERAISLK 350 (838)
Q Consensus 309 ~~~EQ~~Na~~l~~~G~g~~l~~~~~~~~~l~~~l~~ll~~~ 350 (838)
. ..+.++..+.|..++..+ ++.+.++|.++++++
T Consensus 309 ~------~~~~~~~~~~g~~~~~~~--~~~l~~~i~~~~~~~ 342 (374)
T cd03801 309 G------IPEVVEDGETGLLVPPGD--PEALAEAILRLLDDP 342 (374)
T ss_pred C------hhHHhcCCcceEEeCCCC--HHHHHHHHHHHHcCh
Confidence 3 344566678888887665 578899999988765
|
Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. |
| >PRK10307 putative glycosyl transferase; Provisional | Back alignment and domain information |
|---|
Probab=98.92 E-value=1.1e-06 Score=100.27 Aligned_cols=131 Identities=20% Similarity=0.225 Sum_probs=86.7
Q ss_pred HHHHHHhCCCCCCcEEEEEcCCCCch---hhhHHh---hC-CCCcEEEEeCCCCCC---------C-CCCeEECCCCC--
Q 003222 211 KEVRKELGIEDDVKLLILNFGGQPAG---WKLKEE---YL-PSGWKCLVCGASDSQ---------L-PPNFIKLPKDA-- 271 (838)
Q Consensus 211 ~~~r~~l~~~~~~~~Vlvs~Gs~~~~---~~ll~~---l~-~~~~~~vv~G~~~~~---------l-p~nv~~~~~~~-- 271 (838)
..+++.+++++ .+.++++.|..... ..++++ +. .++++++++|..... . ..||+++++++
T Consensus 217 ~~~~~~~~~~~-~~~~i~~~G~l~~~kg~~~li~a~~~l~~~~~~~l~ivG~g~~~~~l~~~~~~~~l~~v~f~G~~~~~ 295 (412)
T PRK10307 217 DALRAQLGLPD-GKKIVLYSGNIGEKQGLELVIDAARRLRDRPDLIFVICGQGGGKARLEKMAQCRGLPNVHFLPLQPYD 295 (412)
T ss_pred HHHHHHcCCCC-CCEEEEEcCccccccCHHHHHHHHHHhccCCCeEEEEECCChhHHHHHHHHHHcCCCceEEeCCCCHH
Confidence 45777788764 44567778877653 223333 22 245788888865421 1 24899888864
Q ss_pred CHHHHHhhcCEEEe--c-CC-----hhhHHHHHHcCCcEEEEeCCCCCChHHHHHHHHHcCcEEEEecCCCChhhHHHHH
Q 003222 272 YTPDFMAASDCMLG--K-IG-----YGTVSEALAYKLPFVFVRRDYFNEEPFLRNMLEFYQGGVEMIRRDLLTGHWKPYL 343 (838)
Q Consensus 272 ~~pdlLa~adl~It--~-gG-----~~Tv~Eal~~GvP~l~iP~~~~~EQ~~Na~~l~~~G~g~~l~~~~~~~~~l~~~l 343 (838)
.++++|+.||++|. . .+ .+.+.|+|++|+|+|+....+ .+ ..+.++ +.|+.++..+ ++.+.++|
T Consensus 296 ~~~~~~~~aDi~v~ps~~e~~~~~~p~kl~eama~G~PVi~s~~~g-~~---~~~~i~--~~G~~~~~~d--~~~la~~i 367 (412)
T PRK10307 296 RLPALLKMADCHLLPQKAGAADLVLPSKLTNMLASGRNVVATAEPG-TE---LGQLVE--GIGVCVEPES--VEALVAAI 367 (412)
T ss_pred HHHHHHHhcCEeEEeeccCcccccCcHHHHHHHHcCCCEEEEeCCC-ch---HHHHHh--CCcEEeCCCC--HHHHHHHH
Confidence 56789999999874 2 22 124689999999999987432 11 122333 6788887766 46899999
Q ss_pred HHHhhCC
Q 003222 344 ERAISLK 350 (838)
Q Consensus 344 ~~ll~~~ 350 (838)
.++++++
T Consensus 368 ~~l~~~~ 374 (412)
T PRK10307 368 AALARQA 374 (412)
T ss_pred HHHHhCH
Confidence 9998765
|
|
| >cd03811 GT1_WabH_like This family is most closely related to the GT1 family of glycosyltransferases | Back alignment and domain information |
|---|
Probab=98.92 E-value=5.2e-07 Score=98.19 Aligned_cols=117 Identities=16% Similarity=0.032 Sum_probs=78.9
Q ss_pred CCcEEEEEcCCCCch---hhhHH---hhCC--CCcEEEEeCCCCCC-----------CCCCeEECCCCCCHHHHHhhcCE
Q 003222 222 DVKLLILNFGGQPAG---WKLKE---EYLP--SGWKCLVCGASDSQ-----------LPPNFIKLPKDAYTPDFMAASDC 282 (838)
Q Consensus 222 ~~~~Vlvs~Gs~~~~---~~ll~---~l~~--~~~~~vv~G~~~~~-----------lp~nv~~~~~~~~~pdlLa~adl 282 (838)
+.+.++++.|+.... ..+++ .+.. +++.++++|..... +.++|.+.++.++++++++.||+
T Consensus 187 ~~~~~i~~~g~~~~~k~~~~~i~~~~~l~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~d~ 266 (353)
T cd03811 187 PDGPVILAVGRLSPQKGFDTLIRAFALLRKEGPDARLVILGDGPLREELEALAKELGLADRVHFLGFQSNPYPYLKAADL 266 (353)
T ss_pred CCceEEEEEecchhhcChHHHHHHHHHhhhcCCCceEEEEcCCccHHHHHHHHHhcCCCccEEEecccCCHHHHHHhCCE
Confidence 445677888876642 22333 2222 36778888865421 46789999988888899999999
Q ss_pred EEec----CChhhHHHHHHcCCcEEEEeCCCCCChHHHHHHHHHcCcEEEEecCCCChhhHHHHHHHH
Q 003222 283 MLGK----IGYGTVSEALAYKLPFVFVRRDYFNEEPFLRNMLEFYQGGVEMIRRDLLTGHWKPYLERA 346 (838)
Q Consensus 283 ~It~----gG~~Tv~Eal~~GvP~l~iP~~~~~EQ~~Na~~l~~~G~g~~l~~~~~~~~~l~~~l~~l 346 (838)
+|.. +..+++.||+++|+|+|+.... ...+.+++...|..++..+. +.+...++.+
T Consensus 267 ~i~ps~~e~~~~~~~Ea~~~G~PvI~~~~~------~~~e~i~~~~~g~~~~~~~~--~~~~~~~~~i 326 (353)
T cd03811 267 FVLSSRYEGFPNVLLEAMALGTPVVATDCP------GPREILEDGENGLLVPVGDE--AALAAAALAL 326 (353)
T ss_pred EEeCcccCCCCcHHHHHHHhCCCEEEcCCC------ChHHHhcCCCceEEECCCCH--HHHHHHHHHH
Confidence 9953 2346899999999999997643 23456777888988876553 4553333333
|
WabH in Klebsiella pneumoniae has been shown to transfer a GlcNAc residue from UDP-GlcNAc onto the acceptor GalUA residue in the cellular outer core. |
| >PRK01212 homoserine kinase; Provisional | Back alignment and domain information |
|---|
Probab=98.91 E-value=1.5e-08 Score=110.71 Aligned_cols=113 Identities=20% Similarity=0.268 Sum_probs=87.9
Q ss_pred HHHHHHHHHHHHHhCCCCCCCEEEEEEeCCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhhhcCCCCC
Q 003222 611 AYVAGTILVLMTELGVRFEDSISMLVSSAVPEGKGVSSSASVEVASMSAIAAAHGLNIHPRDLALLCQKVENHIVGAPCG 690 (838)
Q Consensus 611 ~y~~g~i~~~~~~~g~~~~~g~~i~i~s~iP~g~GLgSSAA~~va~~~al~~l~~~~l~~~ela~~a~~~E~~~~G~~~G 690 (838)
|.+.-++..+.+..|.. .|++|.|.++||.|+|||||||..+|++.+++.++|.+++.++++++|.++|.+
T Consensus 63 Nli~~a~~~~~~~~~~~--~~~~I~i~k~IP~~~GLGssSa~aaA~l~al~~l~~~~l~~~eL~~~a~~~e~~------- 133 (301)
T PRK01212 63 NLVYQAALKFLEKLGKP--PGLRIELEKNIPLGRGLGSSAASIVAGLVAANELAGLPLSKEELLQLATEGEGH------- 133 (301)
T ss_pred ccHHHHHHHHHHHcCCC--CCeEEEEEeCCCCCCCCcHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCC-------
Confidence 44555556666666753 689999999999999999999999999999999999999999999999999962
Q ss_pred hhhHH-HhhcCCCCeEEEE-EecCCceeeeeccCCCeEEEEEeCCCCCc
Q 003222 691 VMDQM-ASACGEANKLLAM-VCQPAELLGVVEIPSHIRFWGIDSGIRHS 737 (838)
Q Consensus 691 ~mDq~-a~~~G~~~~~l~~-d~~~~~~~~~v~~~~~~~~vi~~s~~~~~ 737 (838)
.|+. ++.+||. .+. +.. .+...+++.+.++.+++++++..-+
T Consensus 134 -~ddv~~~l~GG~---~~~~~g~-g~~~~~~~~~~~~~~vlv~p~~~~s 177 (301)
T PRK01212 134 -PDNVAPALLGGL---VLALEEN-GVISVKIPVFDDLKWVVAIPNIELS 177 (301)
T ss_pred -HHHHHHHHhCCE---EEEEECC-ceEEEEecCCCCeEEEEEECCCcCC
Confidence 3555 6789994 333 233 2333667666778888988876543
|
|
| >PRK14615 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional | Back alignment and domain information |
|---|
Probab=98.91 E-value=4.1e-08 Score=106.75 Aligned_cols=170 Identities=16% Similarity=0.203 Sum_probs=113.0
Q ss_pred eEEEEcccccccc----ccccc-cCCCeeeccccc-cceEEEEEEcCCccchhhhhhhhccCCCCCCCCCeEEEEecccc
Q 003222 497 IFVARAPGRLDVM----GGIAD-YSGSLVLQMPIR-EACHVALQKISPSKQRLWKHALARHNDKGQGPMPVLQIVSYGSE 570 (838)
Q Consensus 497 ~~~~~APGRv~L~----GeH~D-y~gg~vl~~ai~-~~~~v~~~~~~d~~~~l~~~~~~~~~~~~~~~~~~i~i~s~~~~ 570 (838)
...+.||+||||+ |-.-| |+.--.+-++|+ .+-.+.+.+.+... +.+...+
T Consensus 6 ~~~~~apaKINL~L~v~~kr~DGyH~l~sl~~~i~~~~D~l~i~~~~~~~---------------------i~~~~~~-- 62 (296)
T PRK14615 6 AVTLRSGCKVNLDLRITGVRPDGYHEIDSLFLPLPEPHDELHVRVTDAPG---------------------ITVTCTI-- 62 (296)
T ss_pred eEEEEecceEEeccccCCcCCCCCcceEEEEEECCCCCcEEEEEECCCCC---------------------EEEEECC--
Confidence 4567999999986 66656 777777888887 47777776654321 2222100
Q ss_pred cCCCCCceeccCCccccCCCCcchhhhhcccCCCCCCChhHHHHHHHHHHHHHhCCCCCCCEEEEEEeCCCCCCCCChHH
Q 003222 571 LSNRGPTFDMDLSDFMDEGKPMSYEKAKKYFDTNPSQKWAAYVAGTILVLMTELGVRFEDSISMLVSSAVPEGKGVSSSA 650 (838)
Q Consensus 571 ~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~~~~~~w~~y~~g~i~~~~~~~g~~~~~g~~i~i~s~iP~g~GLgSSA 650 (838)
.+++ . . .|.+.-++..+.+..+.. .|++|.|.++||.++||||||
T Consensus 63 ---------~~~~---------------------~--~-~Nlv~~a~~~~~~~~~~~--~~~~i~i~k~IP~~~GLGsgs 107 (296)
T PRK14615 63 ---------PDLD---------------------P--E-RNTVTRAYTAFAAATGFR--PPLEVHLRKGIPHGAGLGGGS 107 (296)
T ss_pred ---------CCCC---------------------C--C-ccHHHHHHHHHHHHhCCC--CCeEEEEEeCCCCCCCccHHH
Confidence 0000 0 1 345545556666666654 589999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhhhcCCCCChhhHHHhhcCCCCeEEEEEecCCceeeeecc-CCCeEEEE
Q 003222 651 SVEVASMSAIAAAHGLNIHPRDLALLCQKVENHIVGAPCGVMDQMASACGEANKLLAMVCQPAELLGVVEI-PSHIRFWG 729 (838)
Q Consensus 651 A~~va~~~al~~l~~~~l~~~ela~~a~~~E~~~~G~~~G~mDq~a~~~G~~~~~l~~d~~~~~~~~~v~~-~~~~~~vi 729 (838)
|..+|++.+++++++.+++.++++++|...|.. +|. +..||. ++ . ....+...++++ ++++.+++
T Consensus 108 a~aaa~l~al~~l~~~~l~~~~l~~~a~~~gaD---vPf-------fl~gg~--a~-~-~G~Ge~~~~l~~~~~~~~~vl 173 (296)
T PRK14615 108 ADAAALLRHLNSIAPHPLSPEALAKLAAGVGAD---VPF-------FLHNVP--CR-A-TGIGEILTPVALGLSGWTLVL 173 (296)
T ss_pred HHHHHHHHHHHHHcCCCcCHHHHHHHHHHhCCC---Cee-------eccCCC--EE-E-EeeEeEEEECCCCCCCcEEEE
Confidence 999999999999999999999999999987752 332 233432 21 1 111222244543 24566888
Q ss_pred EeCCCCCcC
Q 003222 730 IDSGIRHSV 738 (838)
Q Consensus 730 ~~s~~~~~~ 738 (838)
+++++.-++
T Consensus 174 ~~P~~~vsT 182 (296)
T PRK14615 174 VCPEVQVST 182 (296)
T ss_pred ECCCCCcCh
Confidence 888776654
|
|
| >TIGR00236 wecB UDP-N-acetylglucosamine 2-epimerase | Back alignment and domain information |
|---|
Probab=98.89 E-value=5.5e-07 Score=101.18 Aligned_cols=238 Identities=16% Similarity=0.060 Sum_probs=127.0
Q ss_pred HHHHHHHHhcCCCcEEEECCC----chHHHHHHHhCCcEEEEec----Cc----hh-HHHHhhhhhcccchHHHHHHHHh
Q 003222 107 LKDEVEWLNSIKADLVVSDVV----PVACRAAADAGIRSVCVTN----FS----WD-FIYAEYVMAAGHHHRSIVWQIAE 173 (838)
Q Consensus 107 l~~~~~~L~~~kPDlVVsD~~----~~~~~aA~~lgIP~V~is~----~~----~~-~i~~~~~~~~~~~~~~i~~~l~~ 173 (838)
+....+++++++||+|++..+ .++.++|..++||++.+.. +. |. ...+. +...+..
T Consensus 75 ~~~l~~~l~~~~pDiv~~~gd~~~~la~a~aa~~~~ipv~h~~~g~~s~~~~~~~~~~~~r~-----------~~~~~ad 143 (365)
T TIGR00236 75 LEGLEELLLEEKPDIVLVQGDTTTTLAGALAAFYLQIPVGHVEAGLRTGDRYSPMPEEINRQ-----------LTGHIAD 143 (365)
T ss_pred HHHHHHHHHHcCCCEEEEeCCchHHHHHHHHHHHhCCCEEEEeCCCCcCCCCCCCccHHHHH-----------HHHHHHH
Confidence 345567889999999997642 4567788899999986521 10 11 00010 0111100
Q ss_pred h-cccc----ceEEecCCCCCCCCCCceeecCcccc---c-CCcChHHHHHHhCCCCCCcEEEEEcCCCC---ch-hhhH
Q 003222 174 D-YSHC----EFLIRLPGYCPMPAFRDVIDVPLVVR---R-LHKSRKEVRKELGIEDDVKLLILNFGGQP---AG-WKLK 240 (838)
Q Consensus 174 ~-y~~~----d~ll~~~~~~~~p~~~~v~~ip~~~~---~-~~~~~~~~r~~l~~~~~~~~Vlvs~Gs~~---~~-~~ll 240 (838)
. +..+ +.+... . ..+....+++.|.... . ....+..+++.++. ++++++++++... .+ ..++
T Consensus 144 ~~~~~s~~~~~~l~~~--G-~~~~~I~vign~~~d~~~~~~~~~~~~~~~~~~~~--~~~~vl~~~hr~~~~~k~~~~ll 218 (365)
T TIGR00236 144 LHFAPTEQAKDNLLRE--N-VKADSIFVTGNTVIDALLTNVEIAYSSPVLSEFGE--DKRYILLTLHRRENVGEPLENIF 218 (365)
T ss_pred hccCCCHHHHHHHHHc--C-CCcccEEEeCChHHHHHHHHHhhccchhHHHhcCC--CCCEEEEecCchhhhhhHHHHHH
Confidence 0 0000 001110 0 1111223444443221 1 11113455666652 4467777765322 11 1233
Q ss_pred Hh---hC--CCCcEEEEe-CCCCC---------CCCCCeEECCCCCCH--HHHHhhcCEEEecCChhhHHHHHHcCCcEE
Q 003222 241 EE---YL--PSGWKCLVC-GASDS---------QLPPNFIKLPKDAYT--PDFMAASDCMLGKIGYGTVSEALAYKLPFV 303 (838)
Q Consensus 241 ~~---l~--~~~~~~vv~-G~~~~---------~lp~nv~~~~~~~~~--pdlLa~adl~It~gG~~Tv~Eal~~GvP~l 303 (838)
++ +. .+++.++++ +.+.. ...+||++++...+. ..+|+.+|++|+.+| +.+.||+++|+|+|
T Consensus 219 ~a~~~l~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~ad~vv~~Sg-~~~~EA~a~g~PvI 297 (365)
T TIGR00236 219 KAIREIVEEFEDVQIVYPVHLNPVVREPLHKHLGDSKRVHLIEPLEYLDFLNLAANSHLILTDSG-GVQEEAPSLGKPVL 297 (365)
T ss_pred HHHHHHHHHCCCCEEEEECCCChHHHHHHHHHhCCCCCEEEECCCChHHHHHHHHhCCEEEECCh-hHHHHHHHcCCCEE
Confidence 32 22 135666665 33221 124678888766543 478899999999887 45799999999999
Q ss_pred EEeCCCCCChHHHHHHHHHcCcEEEEecCCCChhhHHHHHHHHhhCCCCcc---------CCCCHHHHHHHHHHHH
Q 003222 304 FVRRDYFNEEPFLRNMLEFYQGGVEMIRRDLLTGHWKPYLERAISLKPCYE---------GGINGGEVAAHILQET 370 (838)
Q Consensus 304 ~iP~~~~~EQ~~Na~~l~~~G~g~~l~~~~~~~~~l~~~l~~ll~~~~~~~---------~~~~g~~~~a~~i~~~ 370 (838)
.++.. .+++ .+...|.+..+. . +++.+.+++.++++++.... ..+...+++++.|.++
T Consensus 298 ~~~~~--~~~~----e~~~~g~~~lv~-~--d~~~i~~ai~~ll~~~~~~~~~~~~~~~~g~~~a~~ri~~~l~~~ 364 (365)
T TIGR00236 298 VLRDT--TERP----ETVEAGTNKLVG-T--DKENITKAAKRLLTDPDEYKKMSNASNPYGDGEASERIVEELLNH 364 (365)
T ss_pred ECCCC--CCCh----HHHhcCceEEeC-C--CHHHHHHHHHHHHhChHHHHHhhhcCCCCcCchHHHHHHHHHHhh
Confidence 98632 2332 133467776663 2 35788899999887653210 2345556666665543
|
Epimerase activity was also demonstrated in a bifunctional rat enzyme, for which the N-terminal domain appears to be orthologous. The set of proteins found above the suggested cutoff includes E. coli WecB in one of two deeply branched clusters and the rat UDP-N-acetylglucosamine 2-epimerase domain in the other. |
| >cd03786 GT1_UDP-GlcNAc_2-Epimerase Bacterial members of the UDP-N-Acetylglucosamine (GlcNAc) 2-Epimerase family are known to catalyze the reversible interconversion of UDP-GlcNAc and UDP-N-acetylmannosamine (UDP-ManNAc) | Back alignment and domain information |
|---|
Probab=98.88 E-value=4.1e-07 Score=101.76 Aligned_cols=127 Identities=17% Similarity=0.129 Sum_probs=83.5
Q ss_pred HHHhCCCCCCcEEEEEcCCCCc---h---hhhHHhh---CCCCcEEEEeCCCC--CC-------C---CCCeEECCCC--
Q 003222 214 RKELGIEDDVKLLILNFGGQPA---G---WKLKEEY---LPSGWKCLVCGASD--SQ-------L---PPNFIKLPKD-- 270 (838)
Q Consensus 214 r~~l~~~~~~~~Vlvs~Gs~~~---~---~~ll~~l---~~~~~~~vv~G~~~--~~-------l---p~nv~~~~~~-- 270 (838)
++.++++ ++++|++++|+... . ..+++++ ...++.++..|... .. + .+|+++.++.
T Consensus 190 ~~~~~~~-~~~~vlv~~~r~~~~~~~k~~~~l~~al~~l~~~~~~vi~~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~ 268 (363)
T cd03786 190 LELLGLL-PKKYILVTLHRVENVDDGEQLEEILEALAELAEEDVPVVFPNHPRTRPRIREAGLEFLGHHPNVLLISPLGY 268 (363)
T ss_pred hhhcccC-CCCEEEEEeCCccccCChHHHHHHHHHHHHHHhcCCEEEEECCCChHHHHHHHHHhhccCCCCEEEECCcCH
Confidence 3456664 56778888887653 1 1233332 12235555544332 11 2 4688877553
Q ss_pred CCHHHHHhhcCEEEecCChhhHHHHHHcCCcEEEEeCCCCCChHHHHHHHHHcCcEEEEecCCCChhhHHHHHHHHhhCC
Q 003222 271 AYTPDFMAASDCMLGKIGYGTVSEALAYKLPFVFVRRDYFNEEPFLRNMLEFYQGGVEMIRRDLLTGHWKPYLERAISLK 350 (838)
Q Consensus 271 ~~~pdlLa~adl~It~gG~~Tv~Eal~~GvP~l~iP~~~~~EQ~~Na~~l~~~G~g~~l~~~~~~~~~l~~~l~~ll~~~ 350 (838)
.+++.+|+.||+||+.+| +.+.|++++|+|+|.++. .++ ...+.+.|+++.+.. +.+.+.++|.++++++
T Consensus 269 ~~~~~l~~~ad~~v~~Sg-gi~~Ea~~~g~PvI~~~~--~~~----~~~~~~~g~~~~~~~---~~~~i~~~i~~ll~~~ 338 (363)
T cd03786 269 LYFLLLLKNADLVLTDSG-GIQEEASFLGVPVLNLRD--RTE----RPETVESGTNVLVGT---DPEAILAAIEKLLSDE 338 (363)
T ss_pred HHHHHHHHcCcEEEEcCc-cHHhhhhhcCCCEEeeCC--CCc----cchhhheeeEEecCC---CHHHHHHHHHHHhcCc
Confidence 467789999999999999 778899999999999972 222 334667787766642 2568889999999875
Q ss_pred C
Q 003222 351 P 351 (838)
Q Consensus 351 ~ 351 (838)
.
T Consensus 339 ~ 339 (363)
T cd03786 339 F 339 (363)
T ss_pred h
Confidence 4
|
The enzyme serves to produce an activated form of ManNAc residues (UDP-ManNAc) for use in the biosynthesis of a variety of cell surface polysaccharides; The mammalian enzyme is bifunctional, catalyzing both the inversion of stereochemistry at C-2 and the hydrolysis of the UDP-sugar linkage to generate free ManNAc. It also catalyzes the phosphorylation of ManNAc to generate ManNAc 6-phosphate, a precursor to salic acids. In mammals, sialic acids are found at the termini of oligosaccharides in a large variety of cell surface glycoconjugates and are key mediators of cell-cell recognition events. Mutations in human members of this family have been associated with Sialuria, a rare disease caused by the disorders of sialic acid metabolism. This family belongs to the GT-B st |
| >COG1685 Archaeal shikimate kinase [Amino acid transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=98.87 E-value=1e-07 Score=98.03 Aligned_cols=176 Identities=21% Similarity=0.301 Sum_probs=120.0
Q ss_pred EEEccccccccccccccCCCeeeccccccceEEEEEEcCCccchhhhhhhhccCCCCCCCCCeEEEEecccccCCCCCce
Q 003222 499 VARAPGRLDVMGGIADYSGSLVLQMPIREACHVALQKISPSKQRLWKHALARHNDKGQGPMPVLQIVSYGSELSNRGPTF 578 (838)
Q Consensus 499 ~~~APGRv~L~GeH~Dy~gg~vl~~ai~~~~~v~~~~~~d~~~~l~~~~~~~~~~~~~~~~~~i~i~s~~~~~~~~~~~~ 578 (838)
.++|+|-+.++.-.++..|+. ++|++.+.+.++..+..+++ +
T Consensus 4 ~a~A~g~~TIiNAiatG~G~A---fgidL~v~a~v~~~~~~~~~-------------------------~---------- 45 (278)
T COG1685 4 RARAYGGGTIINAIATGKGSA---FGIDLKVEAEVRLSDEGKVR-------------------------G---------- 45 (278)
T ss_pred eEEecCceeEeeehhcCccce---eeecceEEEEEEEcCccccc-------------------------c----------
Confidence 457888888888888887764 78999888877765432210 0
Q ss_pred eccCCccccCCCCcchhhhhcccCCCCCCChhHHHHHHHHHHHHHhCCCCCCCEEEEEEeCCCCCCCCChHHHHHHHHHH
Q 003222 579 DMDLSDFMDEGKPMSYEKAKKYFDTNPSQKWAAYVAGTILVLMTELGVRFEDSISMLVSSAVPEGKGVSSSASVEVASMS 658 (838)
Q Consensus 579 ~~~l~~~~~~~~p~~~~~~~~~~~~~~~~~w~~y~~g~i~~~~~~~g~~~~~g~~i~i~s~iP~g~GLgSSAA~~va~~~ 658 (838)
. +..+ .+.+..++..+.+++|.. .|+++.++|+||.|+||.||+|+..|++.
T Consensus 46 -----~--------------------~~~d-~~li~~~~~~v~e~~g~~--~~~~v~v~SeiP~~~GLkSSSA~~nAlv~ 97 (278)
T COG1685 46 -----E--------------------PEGD-TRLIERCVERVREKYGIP--LGVEVEVESEIPVGSGLKSSSAASNALVK 97 (278)
T ss_pred -----C--------------------CCCC-hHHHHHHHHHHHHHcCCC--cceEEEEecCCCcccCcchhHHHHHHHHH
Confidence 0 0001 234455566677777764 58999999999999999999999999999
Q ss_pred HHHHHhCCCCCHHHHHHHHHHHHhhhcCCC-CChhhH-HHhhcCCCCeEEEEEecCCceeeeeccCCCeEEEEEeCCCCC
Q 003222 659 AIAAAHGLNIHPRDLALLCQKVENHIVGAP-CGVMDQ-MASACGEANKLLAMVCQPAELLGVVEIPSHIRFWGIDSGIRH 736 (838)
Q Consensus 659 al~~l~~~~l~~~ela~~a~~~E~~~~G~~-~G~mDq-~a~~~G~~~~~l~~d~~~~~~~~~v~~~~~~~~vi~~s~~~~ 736 (838)
|+..+.|.++++.++++++.++-... |.. .|-.|- .++.+||. .+.|-+.+.+....+.+ +...+|.--+.++
T Consensus 98 A~~~~~g~~~~~~~i~~l~a~~S~~a-GvSvTGA~DDa~AS~~GG~---~iTDN~~m~Ilrr~~~~-~~~vlI~~p~~k~ 172 (278)
T COG1685 98 AVLKALGEEIDDFEILRLGARASKEA-GVSVTGAFDDACASYLGGI---VITDNRKMRILRRLDLP-ELTVLILAPGEKR 172 (278)
T ss_pred HHHHHcCCCCChhHHHHHHHHHHHhc-CceEeccchHHHHHHhCCe---EEecchhheehhccccC-CceEEEEecCCcc
Confidence 99999999999999999998877653 433 565655 57899993 45554444443333444 4444444444444
Q ss_pred cCCCCchhh
Q 003222 737 SVGGADYGS 745 (838)
Q Consensus 737 ~~~~~~y~~ 745 (838)
....-+.+.
T Consensus 173 ~~~~vdv~~ 181 (278)
T COG1685 173 LSANVDVNR 181 (278)
T ss_pred ccccCCHHH
Confidence 333334333
|
|
| >TIGR03449 mycothiol_MshA UDP-N-acetylglucosamine: 1L-myo-inositol-1-phosphate 1-alpha-D-N-acetylglucosaminyltransferase | Back alignment and domain information |
|---|
Probab=98.84 E-value=7.7e-07 Score=101.19 Aligned_cols=300 Identities=17% Similarity=0.090 Sum_probs=152.5
Q ss_pred cccHHHHHHHHHHHHHCCCeEEEEeCCCCccccccc-CCCceeeeeeccCCCcccccccccChHHHHHHHHHHhhccHHH
Q 003222 27 FGHATRVVEVVRNLISAGHDVHVVTGAPDFVFTSEI-QSPRLFIRKVLLDCGAVQADALTVDRLASLEKYSETAVAPRKS 105 (838)
Q Consensus 27 ~GHv~r~laLA~~L~~~Gh~V~~v~~~~~~~~~~~i-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 105 (838)
.|.-.....||++|.++||+|+++|........... ...++.+... ..+... ..... .+..+...
T Consensus 20 GG~e~~v~~la~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~v~~~--~~~~~~----~~~~~-~~~~~~~~------- 85 (405)
T TIGR03449 20 GGMNVYILETATELARRGIEVDIFTRATRPSQPPVVEVAPGVRVRNV--VAGPYE----GLDKE-DLPTQLCA------- 85 (405)
T ss_pred CCceehHHHHHHHHhhCCCEEEEEecccCCCCCCccccCCCcEEEEe--cCCCcc----cCCHH-HHHHHHHH-------
Confidence 577788999999999999999999874321110000 0123333221 000000 00000 01001000
Q ss_pred HHHHH-HHHHh--cCCCcEEEECCC---chHHHHHHHhCCcEEEEecCchhHHHHhhhhhcccchHHHHHHH-Hhhcccc
Q 003222 106 ILKDE-VEWLN--SIKADLVVSDVV---PVACRAAADAGIRSVCVTNFSWDFIYAEYVMAAGHHHRSIVWQI-AEDYSHC 178 (838)
Q Consensus 106 ~l~~~-~~~L~--~~kPDlVVsD~~---~~~~~aA~~lgIP~V~is~~~~~~i~~~~~~~~~~~~~~i~~~l-~~~y~~~ 178 (838)
..... ..+++ ..+||+|.++.. .++..+++..++|.|...+-.+ .....+..............+ ...+..+
T Consensus 86 ~~~~~~~~~~~~~~~~~Diih~h~~~~~~~~~~~~~~~~~p~v~t~h~~~-~~~~~~~~~~~~~~~~~~~~~e~~~~~~~ 164 (405)
T TIGR03449 86 FTGGVLRAEARHEPGYYDLIHSHYWLSGQVGWLLRDRWGVPLVHTAHTLA-AVKNAALADGDTPEPEARRIGEQQLVDNA 164 (405)
T ss_pred HHHHHHHHHhhccCCCCCeEEechHHHHHHHHHHHHhcCCCEEEeccchH-HHHHHhccCCCCCchHHHHHHHHHHHHhc
Confidence 11111 23333 358999988752 2345566778999876422111 111111100000000000001 1122333
Q ss_pred ceEEecCCC--------CCC-CCCCceeecCccccc-CCcChHHHHHHhCCCCCCcEEEEEcCCCCch---hhhHHh---
Q 003222 179 EFLIRLPGY--------CPM-PAFRDVIDVPLVVRR-LHKSRKEVRKELGIEDDVKLLILNFGGQPAG---WKLKEE--- 242 (838)
Q Consensus 179 d~ll~~~~~--------~~~-p~~~~v~~ip~~~~~-~~~~~~~~r~~l~~~~~~~~Vlvs~Gs~~~~---~~ll~~--- 242 (838)
+.++..... ... +....+++.|+.... ....+...++.++++.+ +.++++.|..... ..++++
T Consensus 165 d~vi~~s~~~~~~~~~~~~~~~~ki~vi~ngvd~~~~~~~~~~~~~~~~~~~~~-~~~i~~~G~l~~~K~~~~li~a~~~ 243 (405)
T TIGR03449 165 DRLIANTDEEARDLVRHYDADPDRIDVVAPGADLERFRPGDRATERARLGLPLD-TKVVAFVGRIQPLKAPDVLLRAVAE 243 (405)
T ss_pred CeEEECCHHHHHHHHHHcCCChhhEEEECCCcCHHHcCCCcHHHHHHhcCCCCC-CcEEEEecCCCcccCHHHHHHHHHH
Confidence 433321110 000 111123344443221 12234456777887644 4566788877653 123332
Q ss_pred hCC--CC--cEEEEeCCCC----C------------CCCCCeEECCCCC--CHHHHHhhcCEEEec----CChhhHHHHH
Q 003222 243 YLP--SG--WKCLVCGASD----S------------QLPPNFIKLPKDA--YTPDFMAASDCMLGK----IGYGTVSEAL 296 (838)
Q Consensus 243 l~~--~~--~~~vv~G~~~----~------------~lp~nv~~~~~~~--~~pdlLa~adl~It~----gG~~Tv~Eal 296 (838)
+.. ++ +.++++|... + .+.++|+++++.+ .++++|+.||++|.. +...++.||+
T Consensus 244 l~~~~~~~~~~l~ivG~~~~~g~~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~l~~ad~~v~ps~~E~~g~~~lEAm 323 (405)
T TIGR03449 244 LLDRDPDRNLRVIVVGGPSGSGLATPDALIELAAELGIADRVRFLPPRPPEELVHVYRAADVVAVPSYNESFGLVAMEAQ 323 (405)
T ss_pred HHhhCCCcceEEEEEeCCCCCcchHHHHHHHHHHHcCCCceEEECCCCCHHHHHHHHHhCCEEEECCCCCCcChHHHHHH
Confidence 221 33 6777777411 1 1356899988863 456899999999952 2235899999
Q ss_pred HcCCcEEEEeCCCCCChHHHHHHHHHcCcEEEEecCCCChhhHHHHHHHHhhCC
Q 003222 297 AYKLPFVFVRRDYFNEEPFLRNMLEFYQGGVEMIRRDLLTGHWKPYLERAISLK 350 (838)
Q Consensus 297 ~~GvP~l~iP~~~~~EQ~~Na~~l~~~G~g~~l~~~~~~~~~l~~~l~~ll~~~ 350 (838)
++|+|+|+....... +.+++...|..++..+ .+.+.++|.++++++
T Consensus 324 a~G~Pvi~~~~~~~~------e~i~~~~~g~~~~~~d--~~~la~~i~~~l~~~ 369 (405)
T TIGR03449 324 ACGTPVVAARVGGLP------VAVADGETGLLVDGHD--PADWADALARLLDDP 369 (405)
T ss_pred HcCCCEEEecCCCcH------hhhccCCceEECCCCC--HHHHHHHHHHHHhCH
Confidence 999999998744322 3455666788887655 468889999998754
|
Members of this protein family, found exclusively in the Actinobacteria, are MshA, the glycosyltransferase of mycothiol biosynthesis. Mycothiol replaces glutathione in these species. |
| >cd03821 GT1_Bme6_like This family is most closely related to the GT1 family of glycosyltransferases | Back alignment and domain information |
|---|
Probab=98.83 E-value=1.1e-06 Score=96.79 Aligned_cols=126 Identities=21% Similarity=0.202 Sum_probs=84.2
Q ss_pred HHHhCCCCCCcEEEEEcCCCCch---hhhHH---hhCC--CCcEEEEeCCCCCC-------------CCCCeEECCCCC-
Q 003222 214 RKELGIEDDVKLLILNFGGQPAG---WKLKE---EYLP--SGWKCLVCGASDSQ-------------LPPNFIKLPKDA- 271 (838)
Q Consensus 214 r~~l~~~~~~~~Vlvs~Gs~~~~---~~ll~---~l~~--~~~~~vv~G~~~~~-------------lp~nv~~~~~~~- 271 (838)
++.++.+ ++..++++.|+.... ..+++ .+.. +++.++++|..... +++||++.++++
T Consensus 194 ~~~~~~~-~~~~~i~~~G~~~~~K~~~~li~a~~~l~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~ 272 (375)
T cd03821 194 RRKFPIL-PDKRIILFLGRLHPKKGLDLLIEAFAKLAERFPDWHLVIAGPDEGGYRAELKQIAAALGLEDRVTFTGMLYG 272 (375)
T ss_pred hhhccCC-CCCcEEEEEeCcchhcCHHHHHHHHHHhhhhcCCeEEEEECCCCcchHHHHHHHHHhcCccceEEEcCCCCh
Confidence 4445554 344566777876542 22333 2332 56788888865321 367899998876
Q ss_pred -CHHHHHhhcCEEEecCC----hhhHHHHHHcCCcEEEEeCCCCCChHHHHHHHHHcCcEEEEecCCCChhhHHHHHHHH
Q 003222 272 -YTPDFMAASDCMLGKIG----YGTVSEALAYKLPFVFVRRDYFNEEPFLRNMLEFYQGGVEMIRRDLLTGHWKPYLERA 346 (838)
Q Consensus 272 -~~pdlLa~adl~It~gG----~~Tv~Eal~~GvP~l~iP~~~~~EQ~~Na~~l~~~G~g~~l~~~~~~~~~l~~~l~~l 346 (838)
.+.++|+.||++|...- .+++.|||++|+|+|+.+.... .+.+.. +.|...... .+.+.++|.++
T Consensus 273 ~~~~~~~~~adv~v~ps~~e~~~~~~~Eama~G~PvI~~~~~~~------~~~~~~-~~~~~~~~~---~~~~~~~i~~l 342 (375)
T cd03821 273 EDKAAALADADLFVLPSHSENFGIVVAEALACGTPVVTTDKVPW------QELIEY-GCGWVVDDD---VDALAAALRRA 342 (375)
T ss_pred HHHHHHHhhCCEEEeccccCCCCcHHHHHHhcCCCEEEcCCCCH------HHHhhc-CceEEeCCC---hHHHHHHHHHH
Confidence 56789999999996432 3689999999999999874332 333444 777766543 26888999999
Q ss_pred hhCC
Q 003222 347 ISLK 350 (838)
Q Consensus 347 l~~~ 350 (838)
++++
T Consensus 343 ~~~~ 346 (375)
T cd03821 343 LELP 346 (375)
T ss_pred HhCH
Confidence 8765
|
Bme6 in Brucella melitensis has been shown to be involved in the biosynthesis of a polysaccharide. |
| >cd03800 GT1_Sucrose_synthase This family is most closely related to the GT1 family of glycosyltransferases | Back alignment and domain information |
|---|
Probab=98.82 E-value=4.9e-07 Score=101.88 Aligned_cols=128 Identities=20% Similarity=0.101 Sum_probs=85.5
Q ss_pred HHHhCCCCCCcEEEEEcCCCCch---hhhHHh---hC--CCCcEEEEeCCCCC-----------------CCCCCeEECC
Q 003222 214 RKELGIEDDVKLLILNFGGQPAG---WKLKEE---YL--PSGWKCLVCGASDS-----------------QLPPNFIKLP 268 (838)
Q Consensus 214 r~~l~~~~~~~~Vlvs~Gs~~~~---~~ll~~---l~--~~~~~~vv~G~~~~-----------------~lp~nv~~~~ 268 (838)
++.++.+.+ ..++++.|+.... ..+++. +. .+++.++++|.... .+.+|+.+++
T Consensus 211 ~~~~~~~~~-~~~i~~~gr~~~~k~~~~ll~a~~~l~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~g 289 (398)
T cd03800 211 RARLLRDPD-KPRILAVGRLDPRKGIDTLIRAYAELPELRERANLVIVGGPRDDILAMDEEELRELARELGVIDRVDFPG 289 (398)
T ss_pred HHhhccCCC-CcEEEEEcccccccCHHHHHHHHHHHHHhCCCeEEEEEECCCCcchhhhhHHHHHHHHhcCCCceEEEec
Confidence 444444433 4566787876642 223332 22 24677777775431 0246788888
Q ss_pred CCC--CHHHHHhhcCEEEecC---C-hhhHHHHHHcCCcEEEEeCCCCCChHHHHHHHHHcCcEEEEecCCCChhhHHHH
Q 003222 269 KDA--YTPDFMAASDCMLGKI---G-YGTVSEALAYKLPFVFVRRDYFNEEPFLRNMLEFYQGGVEMIRRDLLTGHWKPY 342 (838)
Q Consensus 269 ~~~--~~pdlLa~adl~It~g---G-~~Tv~Eal~~GvP~l~iP~~~~~EQ~~Na~~l~~~G~g~~l~~~~~~~~~l~~~ 342 (838)
+++ .++.+++.||+++..+ | ..++.||+++|+|+|+.+.. ...+.+++.+.|..++..+ .+.+.++
T Consensus 290 ~~~~~~~~~~~~~adi~l~ps~~e~~~~~l~Ea~a~G~Pvi~s~~~------~~~e~i~~~~~g~~~~~~~--~~~l~~~ 361 (398)
T cd03800 290 RVSREDLPALYRAADVFVNPALYEPFGLTALEAMACGLPVVATAVG------GPRDIVVDGVTGLLVDPRD--PEALAAA 361 (398)
T ss_pred cCCHHHHHHHHHhCCEEEecccccccCcHHHHHHhcCCCEEECCCC------CHHHHccCCCCeEEeCCCC--HHHHHHH
Confidence 864 4668899999999532 2 35899999999999987632 2445577777898887665 5788999
Q ss_pred HHHHhhCC
Q 003222 343 LERAISLK 350 (838)
Q Consensus 343 l~~ll~~~ 350 (838)
|.++++++
T Consensus 362 i~~l~~~~ 369 (398)
T cd03800 362 LRRLLTDP 369 (398)
T ss_pred HHHHHhCH
Confidence 99998765
|
The sucrose-phosphate synthases in this family may be unique to plants and photosynthetic bacteria. This enzyme catalyzes the synthesis of sucrose 6-phosphate from fructose 6-phosphate and uridine 5'-diphosphate-glucose, a key regulatory step of sucrose metabolism. The activity of this enzyme is regulated by phosphorylation and moderated by the concentration of various metabolites and light. |
| >cd03805 GT1_ALG2_like This family is most closely related to the GT1 family of glycosyltransferases | Back alignment and domain information |
|---|
Probab=98.82 E-value=1.2e-06 Score=99.02 Aligned_cols=120 Identities=12% Similarity=-0.024 Sum_probs=79.2
Q ss_pred CCcEEEEEcCCCCch---hhhHH---hhCC-----CCcEEEEeCCCCC--------------------CCCCCeEECCCC
Q 003222 222 DVKLLILNFGGQPAG---WKLKE---EYLP-----SGWKCLVCGASDS--------------------QLPPNFIKLPKD 270 (838)
Q Consensus 222 ~~~~Vlvs~Gs~~~~---~~ll~---~l~~-----~~~~~vv~G~~~~--------------------~lp~nv~~~~~~ 270 (838)
+...++++.|..... ..+++ .+.. +++.++++|.... .+.+||+++++.
T Consensus 209 ~~~~~i~~~grl~~~Kg~~~ll~a~~~l~~~~~~~~~~~l~i~G~~~~~~~~~~~~~~~l~~~~~~~~~l~~~V~f~g~~ 288 (392)
T cd03805 209 SGKKTFLSINRFERKKNIALAIEAFAILKDKLAEFKNVRLVIAGGYDPRVAENVEYLEELQRLAEELLLLEDQVIFLPSI 288 (392)
T ss_pred CCceEEEEEeeecccCChHHHHHHHHHHHhhcccccCeEEEEEcCCCCCCchhHHHHHHHHHHHHHhcCCCceEEEeCCC
Confidence 445667788876542 12233 2221 4678888885431 134678888887
Q ss_pred CC--HHHHHhhcCEEEecC---C-hhhHHHHHHcCCcEEEEeCCCCCChHHHHHHHHHcCcEEEEecCCCChhhHHHHHH
Q 003222 271 AY--TPDFMAASDCMLGKI---G-YGTVSEALAYKLPFVFVRRDYFNEEPFLRNMLEFYQGGVEMIRRDLLTGHWKPYLE 344 (838)
Q Consensus 271 ~~--~pdlLa~adl~It~g---G-~~Tv~Eal~~GvP~l~iP~~~~~EQ~~Na~~l~~~G~g~~l~~~~~~~~~l~~~l~ 344 (838)
+. ++++|+.+|+++... | ..++.||+++|+|+|+...... .+.+...+.|..++. + ++.+.++|.
T Consensus 289 ~~~~~~~~l~~ad~~l~~s~~E~~g~~~lEAma~G~PvI~s~~~~~------~e~i~~~~~g~~~~~-~--~~~~a~~i~ 359 (392)
T cd03805 289 SDSQKELLLSSARALLYTPSNEHFGIVPLEAMYAGKPVIACNSGGP------LETVVDGETGFLCEP-T--PEEFAEAML 359 (392)
T ss_pred ChHHHHHHHhhCeEEEECCCcCCCCchHHHHHHcCCCEEEECCCCc------HHHhccCCceEEeCC-C--HHHHHHHHH
Confidence 53 347899999999532 2 2578999999999999864332 234555567877653 3 578889999
Q ss_pred HHhhCC
Q 003222 345 RAISLK 350 (838)
Q Consensus 345 ~ll~~~ 350 (838)
++++++
T Consensus 360 ~l~~~~ 365 (392)
T cd03805 360 KLANDP 365 (392)
T ss_pred HHHhCh
Confidence 998765
|
ALG2, a 1,3-mannosyltransferase, in yeast catalyzes the mannosylation of Man(2)GlcNAc(2)-dolichol diphosphate and Man(1)GlcNAc(2)-dolichol diphosphate to form Man(3)GlcNAc(2)-dolichol diphosphate. A deficiency of this enzyme causes an abnormal accumulation of Man1GlcNAc2-PP-dolichol and Man2GlcNAc2-PP-dolichol, which is associated with a type of congenital disorders of glycosylation (CDG), designated CDG-Ii, in humans. |
| >PRK05749 3-deoxy-D-manno-octulosonic-acid transferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.79 E-value=7e-07 Score=102.50 Aligned_cols=81 Identities=12% Similarity=0.020 Sum_probs=57.4
Q ss_pred eEECCCCCCHHHHHhhcCE-EEe----cCChhhHHHHHHcCCcEEEEeCCCCCChHHHHHHHHHcCcEEEEecCCCChhh
Q 003222 264 FIKLPKDAYTPDFMAASDC-MLG----KIGYGTVSEALAYKLPFVFVRRDYFNEEPFLRNMLEFYQGGVEMIRRDLLTGH 338 (838)
Q Consensus 264 v~~~~~~~~~pdlLa~adl-~It----~gG~~Tv~Eal~~GvP~l~iP~~~~~EQ~~Na~~l~~~G~g~~l~~~~~~~~~ 338 (838)
|.+.+....++++|+.||+ |++ -+|..++.||+++|+|+|+.|. ...+....+.+.+.|+++.. .| ++.
T Consensus 304 v~l~~~~~el~~~y~~aDi~~v~~S~~e~~g~~~lEAma~G~PVI~g~~--~~~~~e~~~~~~~~g~~~~~--~d--~~~ 377 (425)
T PRK05749 304 VLLGDTMGELGLLYAIADIAFVGGSLVKRGGHNPLEPAAFGVPVISGPH--TFNFKEIFERLLQAGAAIQV--ED--AED 377 (425)
T ss_pred EEEEecHHHHHHHHHhCCEEEECCCcCCCCCCCHHHHHHhCCCEEECCC--ccCHHHHHHHHHHCCCeEEE--CC--HHH
Confidence 4444444568899999999 453 2455679999999999999873 23344566677777776553 33 467
Q ss_pred HHHHHHHHhhCC
Q 003222 339 WKPYLERAISLK 350 (838)
Q Consensus 339 l~~~l~~ll~~~ 350 (838)
+.++|.++++++
T Consensus 378 La~~l~~ll~~~ 389 (425)
T PRK05749 378 LAKAVTYLLTDP 389 (425)
T ss_pred HHHHHHHHhcCH
Confidence 889999998765
|
|
| >cd03799 GT1_amsK_like This is a family of GT1 glycosyltransferases found specifically in certain bacteria | Back alignment and domain information |
|---|
Probab=98.78 E-value=1.3e-06 Score=96.65 Aligned_cols=121 Identities=17% Similarity=0.104 Sum_probs=82.3
Q ss_pred CCcEEEEEcCCCCch---hhhHH---hhCC--CCcEEEEeCCCCCC-----------CCCCeEECCCCC--CHHHHHhhc
Q 003222 222 DVKLLILNFGGQPAG---WKLKE---EYLP--SGWKCLVCGASDSQ-----------LPPNFIKLPKDA--YTPDFMAAS 280 (838)
Q Consensus 222 ~~~~Vlvs~Gs~~~~---~~ll~---~l~~--~~~~~vv~G~~~~~-----------lp~nv~~~~~~~--~~pdlLa~a 280 (838)
+.+.+++++|..... ..+++ .+.. +++.+.++|..... +++||++.++.+ .+.++|+.|
T Consensus 177 ~~~~~i~~~g~~~~~k~~~~l~~~~~~l~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~l~~~~~~a 256 (355)
T cd03799 177 GEPLRILSVGRLVEKKGLDYLLEALALLKDRGIDFRLDIVGDGPLRDELEALIAELGLEDRVTLLGAKSQEEVRELLRAA 256 (355)
T ss_pred CCCeEEEEEeeeccccCHHHHHHHHHHHhhcCCCeEEEEEECCccHHHHHHHHHHcCCCCeEEECCcCChHHHHHHHHhC
Confidence 345667777876542 22333 2322 46677888865421 467899998874 466899999
Q ss_pred CEEEe----------cCChhhHHHHHHcCCcEEEEeCCCCCChHHHHHHHHHcCcEEEEecCCCChhhHHHHHHHHhhCC
Q 003222 281 DCMLG----------KIGYGTVSEALAYKLPFVFVRRDYFNEEPFLRNMLEFYQGGVEMIRRDLLTGHWKPYLERAISLK 350 (838)
Q Consensus 281 dl~It----------~gG~~Tv~Eal~~GvP~l~iP~~~~~EQ~~Na~~l~~~G~g~~l~~~~~~~~~l~~~l~~ll~~~ 350 (838)
|++|. -+..+++.||+++|+|+|+.+..... +.++....|..++..+ .+.+.++|.++++++
T Consensus 257 di~l~~s~~~~~~~~e~~~~~~~Ea~a~G~Pvi~~~~~~~~------~~i~~~~~g~~~~~~~--~~~l~~~i~~~~~~~ 328 (355)
T cd03799 257 DLFVLPSVTAADGDREGLPVVLMEAMAMGLPVISTDVSGIP------ELVEDGETGLLVPPGD--PEALADAIERLLDDP 328 (355)
T ss_pred CEEEecceecCCCCccCccHHHHHHHHcCCCEEecCCCCcc------hhhhCCCceEEeCCCC--HHHHHHHHHHHHhCH
Confidence 99997 23346899999999999997743322 2455555888887554 468889999988765
|
amsK in Erwinia amylovora, has been reported to be involved in the biosynthesis of amylovoran, a exopolysaccharide acting as a virulence factor. |
| >cd03796 GT1_PIG-A_like This family is most closely related to the GT1 family of glycosyltransferases | Back alignment and domain information |
|---|
Probab=98.78 E-value=1.3e-06 Score=99.31 Aligned_cols=119 Identities=17% Similarity=0.049 Sum_probs=78.0
Q ss_pred CCcEEEEEcCCCCch---hhhHHh---hC--CCCcEEEEeCCCCCC-----------CCCCeEECCCCC--CHHHHHhhc
Q 003222 222 DVKLLILNFGGQPAG---WKLKEE---YL--PSGWKCLVCGASDSQ-----------LPPNFIKLPKDA--YTPDFMAAS 280 (838)
Q Consensus 222 ~~~~Vlvs~Gs~~~~---~~ll~~---l~--~~~~~~vv~G~~~~~-----------lp~nv~~~~~~~--~~pdlLa~a 280 (838)
+...++++.|..... ..+++. +. .+++.+++.|..... +.++|.++++.+ .++++|+.+
T Consensus 191 ~~~~~i~~~grl~~~Kg~~~li~a~~~l~~~~~~~~l~i~G~g~~~~~l~~~~~~~~l~~~v~~~G~~~~~~~~~~l~~a 270 (398)
T cd03796 191 NDKITIVVISRLVYRKGIDLLVGIIPEICKKHPNVRFIIGGDGPKRILLEEMREKYNLQDRVELLGAVPHERVRDVLVQG 270 (398)
T ss_pred CCceEEEEEeccchhcCHHHHHHHHHHHHhhCCCEEEEEEeCCchHHHHHHHHHHhCCCCeEEEeCCCCHHHHHHHHHhC
Confidence 345677888876542 223332 22 357788888865421 456788888863 567899999
Q ss_pred CEEEecC---Ch-hhHHHHHHcCCcEEEEeCCCCCChHHHHHHHHHcCcEEEEecCCCChhhHHHHHHHHhhCC
Q 003222 281 DCMLGKI---GY-GTVSEALAYKLPFVFVRRDYFNEEPFLRNMLEFYQGGVEMIRRDLLTGHWKPYLERAISLK 350 (838)
Q Consensus 281 dl~It~g---G~-~Tv~Eal~~GvP~l~iP~~~~~EQ~~Na~~l~~~G~g~~l~~~~~~~~~l~~~l~~ll~~~ 350 (838)
|++|..+ |+ .++.|||++|+|+|+.+.....| .+. .|.+..... +.+.+.++|.+++++.
T Consensus 271 d~~v~pS~~E~~g~~~~EAma~G~PVI~s~~gg~~e------~i~-~~~~~~~~~---~~~~l~~~l~~~l~~~ 334 (398)
T cd03796 271 HIFLNTSLTEAFCIAIVEAASCGLLVVSTRVGGIPE------VLP-PDMILLAEP---DVESIVRKLEEAISIL 334 (398)
T ss_pred CEEEeCChhhccCHHHHHHHHcCCCEEECCCCCchh------hee-CCceeecCC---CHHHHHHHHHHHHhCh
Confidence 9999633 32 48999999999999977543332 233 344444332 3578889999988754
|
Phosphatidylinositol glycan-class A (PIG-A), an X-linked gene in humans, is necessary for the synthesis of N-acetylglucosaminyl-phosphatidylinositol, a very early intermediate in glycosyl phosphatidylinositol (GPI)-anchor biosynthesis. The GPI-anchor is an important cellular structure that facilitates the attachment of many proteins to cell surfaces. Somatic mutations in PIG-A have been associated with Paroxysmal Nocturnal Hemoglobinuria (PNH), an acquired hematological disorder. |
| >PTZ00299 homoserine kinase; Provisional | Back alignment and domain information |
|---|
Probab=98.76 E-value=4.9e-08 Score=107.22 Aligned_cols=113 Identities=19% Similarity=0.185 Sum_probs=81.7
Q ss_pred hHHHHHHHHHHHHHhCCCCCCCEEEEEEeCCCCCCCCChHHHHHHHHHHHHHHHhCCCCC---HHHHHHHHHHHHhhhcC
Q 003222 610 AAYVAGTILVLMTELGVRFEDSISMLVSSAVPEGKGVSSSASVEVASMSAIAAAHGLNIH---PRDLALLCQKVENHIVG 686 (838)
Q Consensus 610 ~~y~~g~i~~~~~~~g~~~~~g~~i~i~s~iP~g~GLgSSAA~~va~~~al~~l~~~~l~---~~ela~~a~~~E~~~~G 686 (838)
.|.+..++..+++..+.....|+++.+.++||.++|||||||..+|.+.+++.++|.+++ +.+++++|.+.|.
T Consensus 61 ~nlv~~a~~~~~~~~~~~~~~g~~i~i~k~IP~~~GLGSSsA~avA~l~a~n~l~g~~l~~~~~~el~~~A~~~EG---- 136 (336)
T PTZ00299 61 DNMVVQACRLAFEEYAHKSMPPLKFIMHSNIPYGCGCGSSSAAAVAGFVAGMKLCGLTMETENEEALLQAIAKFEG---- 136 (336)
T ss_pred chHHHHHHHHHHHHhcCCCCCceEEEEecCCCccCCccHHHHHHHHHHHHHHHHhCCCCCccCHHHHHHHHHhhcC----
Confidence 345555555556566542124899999999999999999999999999999999999985 7899999999984
Q ss_pred CCCChhhHH-HhhcCCCCeEEEEEecCCce-eeeeccCCCeEEEEEeC
Q 003222 687 APCGVMDQM-ASACGEANKLLAMVCQPAEL-LGVVEIPSHIRFWGIDS 732 (838)
Q Consensus 687 ~~~G~mDq~-a~~~G~~~~~l~~d~~~~~~-~~~v~~~~~~~~vi~~s 732 (838)
..|+. ++++||. ++.....+.+. ..+++.++++.++++--
T Consensus 137 ----HpDNVapal~GG~--~~~~~~~~ge~~~~~i~~~~~~~~vv~iP 178 (336)
T PTZ00299 137 ----HPDNAAPAIYGGI--QLVYKKDNGRFLTYRVPTPPNLSVVLFVP 178 (336)
T ss_pred ----CcccHHHHHhCCE--EEEEecCCCceEEEecCCCCCeEEEEEEC
Confidence 25865 6888994 22222222333 23566666787777643
|
|
| >cd03798 GT1_wlbH_like This family is most closely related to the GT1 family of glycosyltransferases | Back alignment and domain information |
|---|
Probab=98.76 E-value=1.9e-06 Score=94.58 Aligned_cols=121 Identities=19% Similarity=0.109 Sum_probs=83.6
Q ss_pred CCcEEEEEcCCCCch---hhhHH---hhCC--CCcEEEEeCCCCCC-----------CCCCeEECCCCC--CHHHHHhhc
Q 003222 222 DVKLLILNFGGQPAG---WKLKE---EYLP--SGWKCLVCGASDSQ-----------LPPNFIKLPKDA--YTPDFMAAS 280 (838)
Q Consensus 222 ~~~~Vlvs~Gs~~~~---~~ll~---~l~~--~~~~~vv~G~~~~~-----------lp~nv~~~~~~~--~~pdlLa~a 280 (838)
+.+.++++.|+.... ..+++ .+.. +++.++++|..... +++||.+.++.+ .+.++|..|
T Consensus 200 ~~~~~i~~~g~~~~~k~~~~li~~~~~~~~~~~~~~l~i~g~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~a 279 (377)
T cd03798 200 EDKKVILFVGRLVPRKGIDYLIEALARLLKKRPDVHLVIVGDGPLREALEALAAELGLEDRVTFLGAVPHEEVPAYYAAA 279 (377)
T ss_pred CCceEEEEeccCccccCHHHHHHHHHHHHhcCCCeEEEEEcCCcchHHHHHHHHhcCCcceEEEeCCCCHHHHHHHHHhc
Confidence 345677888876642 22233 2222 35677888865421 357899888875 356889999
Q ss_pred CEEEec----CChhhHHHHHHcCCcEEEEeCCCCCChHHHHHHHHHcCcEEEEecCCCChhhHHHHHHHHhhCC
Q 003222 281 DCMLGK----IGYGTVSEALAYKLPFVFVRRDYFNEEPFLRNMLEFYQGGVEMIRRDLLTGHWKPYLERAISLK 350 (838)
Q Consensus 281 dl~It~----gG~~Tv~Eal~~GvP~l~iP~~~~~EQ~~Na~~l~~~G~g~~l~~~~~~~~~l~~~l~~ll~~~ 350 (838)
|++|.. +..+++.||+++|+|+|+.+.. ...+.++..+.|..++..+ .+.+..+|.++++++
T Consensus 280 d~~i~~~~~~~~~~~~~Ea~~~G~pvI~~~~~------~~~~~~~~~~~g~~~~~~~--~~~l~~~i~~~~~~~ 345 (377)
T cd03798 280 DVFVLPSLREGFGLVLLEAMACGLPVVATDVG------GIPEIITDGENGLLVPPGD--PEALAEAILRLLADP 345 (377)
T ss_pred CeeecchhhccCChHHHHHHhcCCCEEEecCC------ChHHHhcCCcceeEECCCC--HHHHHHHHHHHhcCc
Confidence 999943 3456899999999999997633 2345566777788887665 468889999998766
|
wlbH in Bordetella parapertussis has been shown to be required for the biosynthesis of a trisaccharide that, when attached to the B. pertussis lipopolysaccharide (LPS) core (band B), generates band A LPS. |
| >PRK00650 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional | Back alignment and domain information |
|---|
Probab=98.73 E-value=2.7e-07 Score=98.84 Aligned_cols=111 Identities=15% Similarity=0.142 Sum_probs=81.0
Q ss_pred hHHHHHHHHHHHHHhCCCCCCCEEEEEEeCCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhhhcCCCC
Q 003222 610 AAYVAGTILVLMTELGVRFEDSISMLVSSAVPEGKGVSSSASVEVASMSAIAAAHGLNIHPRDLALLCQKVENHIVGAPC 689 (838)
Q Consensus 610 ~~y~~g~i~~~~~~~g~~~~~g~~i~i~s~iP~g~GLgSSAA~~va~~~al~~l~~~~l~~~ela~~a~~~E~~~~G~~~ 689 (838)
.|.+.-++..+.+..|.. .|++|.+.++||.|+|||||||-.+|++.+++.+++.++++.+++++|.+.|.
T Consensus 61 ~Nlv~ra~~~l~~~~g~~--~~v~I~i~K~IP~gaGLGggSS~aAa~L~~ln~l~~~~ls~~eL~~lA~~lGa------- 131 (288)
T PRK00650 61 SNSIWKSVALFRRYTGIT--TPVSWRVVKQIPIGAGLAGGSSNAATALFALNQIFQTGLSDEELRSLAEKIGM------- 131 (288)
T ss_pred ccHHHHHHHHHHHHhCCC--CCeEEEEeeCCCCcCCcCcchhHHHHHHHHHHHHhCCCcCHHHHHHHHHHhCC-------
Confidence 566666667776666754 58999999999999999999999999999999999999999999999998874
Q ss_pred ChhhHHHhhcCCCCeEEEEEecCCceeeeeccCCCeEEEEEeCCCCC
Q 003222 690 GVMDQMASACGEANKLLAMVCQPAELLGVVEIPSHIRFWGIDSGIRH 736 (838)
Q Consensus 690 G~mDq~a~~~G~~~~~l~~d~~~~~~~~~v~~~~~~~~vi~~s~~~~ 736 (838)
|--.++.||. ++. ....+..++++.+.+..++++..+..=
T Consensus 132 ---DvPffl~~g~--a~~--~G~Ge~l~~~~~~~~~~~vlv~P~~~v 171 (288)
T PRK00650 132 ---DTPFFFSTGS--ALG--VGRGEKIIALEESVSDRYVLYFSSEGV 171 (288)
T ss_pred ---cchhhhcCce--EEE--EecCCEEEECcCCCCceEEEEeCCCCC
Confidence 4334444442 222 223343355554455556777654443
|
|
| >cd03818 GT1_ExpC_like This family is most closely related to the GT1 family of glycosyltransferases | Back alignment and domain information |
|---|
Probab=98.73 E-value=3.2e-06 Score=96.03 Aligned_cols=82 Identities=12% Similarity=-0.045 Sum_probs=61.1
Q ss_pred CCCeEECCCCC--CHHHHHhhcCEEEecC---Ch-hhHHHHHHcCCcEEEEeCCCCCChHHHHHHHHHcCcEEEEecCCC
Q 003222 261 PPNFIKLPKDA--YTPDFMAASDCMLGKI---GY-GTVSEALAYKLPFVFVRRDYFNEEPFLRNMLEFYQGGVEMIRRDL 334 (838)
Q Consensus 261 p~nv~~~~~~~--~~pdlLa~adl~It~g---G~-~Tv~Eal~~GvP~l~iP~~~~~EQ~~Na~~l~~~G~g~~l~~~~~ 334 (838)
.++|+++++++ .++++|+.+|++|.-+ |. .++.|||++|+|+|+..... +.+.+.....|..++..+
T Consensus 280 ~~~V~f~G~v~~~~~~~~l~~adv~v~~s~~e~~~~~llEAmA~G~PVIas~~~g------~~e~i~~~~~G~lv~~~d- 352 (396)
T cd03818 280 LSRVHFLGRVPYDQYLALLQVSDVHVYLTYPFVLSWSLLEAMACGCLVVGSDTAP------VREVITDGENGLLVDFFD- 352 (396)
T ss_pred cceEEEeCCCCHHHHHHHHHhCcEEEEcCcccccchHHHHHHHCCCCEEEcCCCC------chhhcccCCceEEcCCCC-
Confidence 35788888874 4668999999999532 22 37899999999999976433 233455556788887665
Q ss_pred ChhhHHHHHHHHhhCC
Q 003222 335 LTGHWKPYLERAISLK 350 (838)
Q Consensus 335 ~~~~l~~~l~~ll~~~ 350 (838)
++.+.++|.++++++
T Consensus 353 -~~~la~~i~~ll~~~ 367 (396)
T cd03818 353 -PDALAAAVIELLDDP 367 (396)
T ss_pred -HHHHHHHHHHHHhCH
Confidence 578999999998765
|
ExpC in Rhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucan (exopolysaccharide II). |
| >TIGR01240 mevDPdecarb diphosphomevalonate decarboxylase | Back alignment and domain information |
|---|
Probab=98.71 E-value=1.5e-07 Score=102.32 Aligned_cols=81 Identities=21% Similarity=0.249 Sum_probs=69.3
Q ss_pred hHHHHHHHHHHHHHhCCCCCCCEEEEEEeCCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhhhcCCCC
Q 003222 610 AAYVAGTILVLMTELGVRFEDSISMLVSSAVPEGKGVSSSASVEVASMSAIAAAHGLNIHPRDLALLCQKVENHIVGAPC 689 (838)
Q Consensus 610 ~~y~~g~i~~~~~~~g~~~~~g~~i~i~s~iP~g~GLgSSAA~~va~~~al~~l~~~~l~~~ela~~a~~~E~~~~G~~~ 689 (838)
.+.+..++..+.+..+.. .+++|.+.+++|.++|||||||..+|++.|++.++++++++.++++++.++| |..|
T Consensus 66 ~~~v~~~l~~~~~~~~~~--~~v~I~~~n~iP~~aGLgSSAA~~aA~~~Al~~l~~l~l~~~eL~~lA~~gs----Gsa~ 139 (305)
T TIGR01240 66 NEKTSNCLDDFRQLRKEQ--EKLHIVSQNNFPTAAGLASSASGLAALVSACAKLYQLPLDTSELSRIARKGS----GSAC 139 (305)
T ss_pred hHHHHHHHHHHHHhcCCC--CceEEEEecCCCCCCccchHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhc----CCee
Confidence 456667666665555543 5899999999999999999999999999999999999999999999999887 6666
Q ss_pred ChhhHHHhhcCCC
Q 003222 690 GVMDQMASACGEA 702 (838)
Q Consensus 690 G~mDq~a~~~G~~ 702 (838)
+ |++||.
T Consensus 140 ~------s~~GG~ 146 (305)
T TIGR01240 140 R------SLFGGY 146 (305)
T ss_pred e------eeecCe
Confidence 6 899995
|
Alternate names: mevalonate diphosphate decarboxylase; pyrophosphomevalonate decarboxylase |
| >cd03795 GT1_like_4 This family is most closely related to the GT1 family of glycosyltransferases | Back alignment and domain information |
|---|
Probab=98.69 E-value=3.5e-06 Score=93.24 Aligned_cols=120 Identities=16% Similarity=0.071 Sum_probs=82.0
Q ss_pred CCcEEEEEcCCCCch---hhhHHhh--CCCCcEEEEeCCCCCC-----------CCCCeEECCCCCC--HHHHHhhcCEE
Q 003222 222 DVKLLILNFGGQPAG---WKLKEEY--LPSGWKCLVCGASDSQ-----------LPPNFIKLPKDAY--TPDFMAASDCM 283 (838)
Q Consensus 222 ~~~~Vlvs~Gs~~~~---~~ll~~l--~~~~~~~vv~G~~~~~-----------lp~nv~~~~~~~~--~pdlLa~adl~ 283 (838)
....++++.|+.... ..+++.+ +. ++.++++|..... +.+||+++++++. ++++++.||++
T Consensus 189 ~~~~~i~~~G~~~~~K~~~~li~a~~~l~-~~~l~i~G~g~~~~~~~~~~~~~~~~~~V~~~g~v~~~~~~~~~~~ad~~ 267 (357)
T cd03795 189 AGRPFFLFVGRLVYYKGLDVLLEAAAALP-DAPLVIVGEGPLEAELEALAAALGLLDRVRFLGRLDDEEKAALLAACDVF 267 (357)
T ss_pred CCCcEEEEecccccccCHHHHHHHHHhcc-CcEEEEEeCChhHHHHHHHHHhcCCcceEEEcCCCCHHHHHHHHHhCCEE
Confidence 344567788876542 2233332 22 6778888865421 3578999998763 56899999999
Q ss_pred Eec-----CC-hhhHHHHHHcCCcEEEEeCCCCCChHHHHHHHHH-cCcEEEEecCCCChhhHHHHHHHHhhCC
Q 003222 284 LGK-----IG-YGTVSEALAYKLPFVFVRRDYFNEEPFLRNMLEF-YQGGVEMIRRDLLTGHWKPYLERAISLK 350 (838)
Q Consensus 284 It~-----gG-~~Tv~Eal~~GvP~l~iP~~~~~EQ~~Na~~l~~-~G~g~~l~~~~~~~~~l~~~l~~ll~~~ 350 (838)
|.- -| ..++.||+++|+|+|+.+.....| .+.. .+.|..++..+ .+.+.++|.++++++
T Consensus 268 i~ps~~~~e~~g~~~~Ea~~~g~Pvi~~~~~~~~~------~i~~~~~~g~~~~~~d--~~~~~~~i~~l~~~~ 333 (357)
T cd03795 268 VFPSVERSEAFGIVLLEAMAFGKPVISTEIGTGGS------YVNLHGVTGLVVPPGD--PAALAEAIRRLLEDP 333 (357)
T ss_pred EeCCcccccccchHHHHHHHcCCCEEecCCCCchh------HHhhCCCceEEeCCCC--HHHHHHHHHHHHHCH
Confidence 932 22 347999999999999987443333 2443 67888887655 468999999999766
|
Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP-linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog |
| >cd03822 GT1_ecORF704_like This family is most closely related to the GT1 family of glycosyltransferases | Back alignment and domain information |
|---|
Probab=98.67 E-value=3.7e-06 Score=92.98 Aligned_cols=119 Identities=18% Similarity=0.190 Sum_probs=80.1
Q ss_pred CcEEEEEcCCCCch---hhhHHh---hC--CCCcEEEEeCCCCCC----------------CCCCeEECCC-C--CCHHH
Q 003222 223 VKLLILNFGGQPAG---WKLKEE---YL--PSGWKCLVCGASDSQ----------------LPPNFIKLPK-D--AYTPD 275 (838)
Q Consensus 223 ~~~Vlvs~Gs~~~~---~~ll~~---l~--~~~~~~vv~G~~~~~----------------lp~nv~~~~~-~--~~~pd 275 (838)
.+.+++++|+.... ..++++ +. .+++.++++|...+. +.+||.+++. . ..+++
T Consensus 184 ~~~~i~~~G~~~~~K~~~~ll~a~~~~~~~~~~~~l~i~G~~~~~~~~~~~~~~~~i~~~~~~~~v~~~~~~~~~~~~~~ 263 (366)
T cd03822 184 GRPVLLTFGLLRPYKGLELLLEALPLLVAKHPDVRLLVAGETHPDLERYRGEAYALAERLGLADRVIFINRYLPDEELPE 263 (366)
T ss_pred CCeEEEEEeeccCCCCHHHHHHHHHHHHhhCCCeEEEEeccCccchhhhhhhhHhHHHhcCCCCcEEEecCcCCHHHHHH
Confidence 34566777776542 223332 22 256788888864321 3467877754 3 24668
Q ss_pred HHhhcCEEEec------CChhhHHHHHHcCCcEEEEeCCCCCChHHHHHHHHHcCcEEEEecCCCChhhHHHHHHHHhhC
Q 003222 276 FMAASDCMLGK------IGYGTVSEALAYKLPFVFVRRDYFNEEPFLRNMLEFYQGGVEMIRRDLLTGHWKPYLERAISL 349 (838)
Q Consensus 276 lLa~adl~It~------gG~~Tv~Eal~~GvP~l~iP~~~~~EQ~~Na~~l~~~G~g~~l~~~~~~~~~l~~~l~~ll~~ 349 (838)
+|+.||++|.- +..++++||+++|+|+|+.+... .++ +...+.|..+...+ .+.+.++|.+++++
T Consensus 264 ~~~~ad~~v~ps~~e~~~~~~~~~Ea~a~G~PvI~~~~~~-~~~------i~~~~~g~~~~~~d--~~~~~~~l~~l~~~ 334 (366)
T cd03822 264 LFSAADVVVLPYRSADQTQSGVLAYAIGFGKPVISTPVGH-AEE------VLDGGTGLLVPPGD--PAALAEAIRRLLAD 334 (366)
T ss_pred HHhhcCEEEecccccccccchHHHHHHHcCCCEEecCCCC-hhe------eeeCCCcEEEcCCC--HHHHHHHHHHHHcC
Confidence 99999999942 23358999999999999987543 333 55667788887665 46899999999876
Q ss_pred C
Q 003222 350 K 350 (838)
Q Consensus 350 ~ 350 (838)
+
T Consensus 335 ~ 335 (366)
T cd03822 335 P 335 (366)
T ss_pred h
Confidence 5
|
ORF704 in E. coli has been shown to be involved in the biosynthesis of O-specific mannose homopolysaccharides. |
| >cd03802 GT1_AviGT4_like This family is most closely related to the GT1 family of glycosyltransferases | Back alignment and domain information |
|---|
Probab=98.66 E-value=2.8e-06 Score=93.25 Aligned_cols=114 Identities=15% Similarity=0.074 Sum_probs=76.1
Q ss_pred EEEEEcCCCCch---hhhHHhhCCCCcEEEEeCCCCCC---------C---CCCeEECCCCCC--HHHHHhhcCEEEec-
Q 003222 225 LLILNFGGQPAG---WKLKEEYLPSGWKCLVCGASDSQ---------L---PPNFIKLPKDAY--TPDFMAASDCMLGK- 286 (838)
Q Consensus 225 ~Vlvs~Gs~~~~---~~ll~~l~~~~~~~vv~G~~~~~---------l---p~nv~~~~~~~~--~pdlLa~adl~It~- 286 (838)
.++++.|..... ..+++.....++.+++.|..... . .++|++.++.++ ++++|+.+|++|..
T Consensus 172 ~~i~~~Gr~~~~Kg~~~li~~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~~v~~~G~~~~~~~~~~~~~~d~~v~ps 251 (335)
T cd03802 172 DYLLFLGRISPEKGPHLAIRAARRAGIPLKLAGPVSDPDYFYREIAPELLDGPDIEYLGEVGGAEKAELLGNARALLFPI 251 (335)
T ss_pred CEEEEEEeeccccCHHHHHHHHHhcCCeEEEEeCCCCHHHHHHHHHHhcccCCcEEEeCCCCHHHHHHHHHhCcEEEeCC
Confidence 345666766442 23344444457788888866421 1 478999998764 46889999999952
Q ss_pred ---CC-hhhHHHHHHcCCcEEEEeCCCCCChHHHHHHHHHcCcEEEEecCCCChhhHHHHHHHHhh
Q 003222 287 ---IG-YGTVSEALAYKLPFVFVRRDYFNEEPFLRNMLEFYQGGVEMIRRDLLTGHWKPYLERAIS 348 (838)
Q Consensus 287 ---gG-~~Tv~Eal~~GvP~l~iP~~~~~EQ~~Na~~l~~~G~g~~l~~~~~~~~~l~~~l~~ll~ 348 (838)
-| ..++.|||++|+|+|+....... +.++....|..++. .+.+.++|.+++.
T Consensus 252 ~~~E~~~~~~lEAma~G~PvI~~~~~~~~------e~i~~~~~g~l~~~----~~~l~~~l~~l~~ 307 (335)
T cd03802 252 LWEEPFGLVMIEAMACGTPVIAFRRGAVP------EVVEDGVTGFLVDS----VEELAAAVARADR 307 (335)
T ss_pred cccCCcchHHHHHHhcCCCEEEeCCCCch------hheeCCCcEEEeCC----HHHHHHHHHHHhc
Confidence 23 35899999999999998754332 33444446877764 5788888887754
|
aviGT4 in Streptomyces viridochromogenes has been shown to be involved in biosynthesis of oligosaccharide antibiotic avilamycin A. Inactivation of aviGT4 resulted in a mutant that accumulated a novel avilamycin derivative lacking the terminal eurekanate residue. |
| >PLN02275 transferase, transferring glycosyl groups | Back alignment and domain information |
|---|
Probab=98.65 E-value=6.1e-06 Score=93.00 Aligned_cols=92 Identities=12% Similarity=0.109 Sum_probs=64.2
Q ss_pred CCcEEEEeCCCCCC---------C-CCCeEECC-CC--CCHHHHHhhcCEEEe----cCC---hhhHHHHHHcCCcEEEE
Q 003222 246 SGWKCLVCGASDSQ---------L-PPNFIKLP-KD--AYTPDFMAASDCMLG----KIG---YGTVSEALAYKLPFVFV 305 (838)
Q Consensus 246 ~~~~~vv~G~~~~~---------l-p~nv~~~~-~~--~~~pdlLa~adl~It----~gG---~~Tv~Eal~~GvP~l~i 305 (838)
+++.++++|..+.. + -+|+.+++ +. +.+|++|+.||++|. ..| .+++.|||++|+|+|+.
T Consensus 260 ~~i~l~ivG~G~~~~~l~~~~~~~~l~~v~~~~~~~~~~~~~~~l~~aDv~v~~~~s~~~e~~p~~llEAmA~G~PVVa~ 339 (371)
T PLN02275 260 PRLLFIITGKGPQKAMYEEKISRLNLRHVAFRTMWLEAEDYPLLLGSADLGVSLHTSSSGLDLPMKVVDMFGCGLPVCAV 339 (371)
T ss_pred CCeEEEEEeCCCCHHHHHHHHHHcCCCceEEEcCCCCHHHHHHHHHhCCEEEEeccccccccccHHHHHHHHCCCCEEEe
Confidence 46788888876531 1 14576654 33 467899999999994 112 35799999999999997
Q ss_pred eCCCCCChHHHHHHHHHcCcEEEEecCCCChhhHHHHHHHHh
Q 003222 306 RRDYFNEEPFLRNMLEFYQGGVEMIRRDLLTGHWKPYLERAI 347 (838)
Q Consensus 306 P~~~~~EQ~~Na~~l~~~G~g~~l~~~~~~~~~l~~~l~~ll 347 (838)
... .+.+.++..+.|..++ + ++.+.++|.+++
T Consensus 340 ~~g------g~~eiv~~g~~G~lv~--~--~~~la~~i~~l~ 371 (371)
T PLN02275 340 SYS------CIGELVKDGKNGLLFS--S--SSELADQLLELL 371 (371)
T ss_pred cCC------ChHHHccCCCCeEEEC--C--HHHHHHHHHHhC
Confidence 632 2455677777898885 2 567888887764
|
|
| >cd03792 GT1_Trehalose_phosphorylase Trehalose phosphorylase (TP) reversibly catalyzes trehalose synthesis and degradation from alpha-glucose-1-phosphate (alpha-Glc-1-P) and glucose | Back alignment and domain information |
|---|
Probab=98.65 E-value=3e-06 Score=95.30 Aligned_cols=128 Identities=15% Similarity=0.046 Sum_probs=83.1
Q ss_pred HHHHHhCCCCCCcEEEEEcCCCCch---hhhHHh---hC--CCCcEEEEeCCCCC----------------CCCCCeEEC
Q 003222 212 EVRKELGIEDDVKLLILNFGGQPAG---WKLKEE---YL--PSGWKCLVCGASDS----------------QLPPNFIKL 267 (838)
Q Consensus 212 ~~r~~l~~~~~~~~Vlvs~Gs~~~~---~~ll~~---l~--~~~~~~vv~G~~~~----------------~lp~nv~~~ 267 (838)
.+++.++++++++ ++++.|..... ..+++. +. .+++.++++|.... .+..++.++
T Consensus 179 ~~~~~~~~~~~~~-~i~~vgrl~~~Kg~~~ll~a~~~l~~~~~~~~l~i~G~g~~~~~~~~~~~~~~~~~~~~~~~v~~~ 257 (372)
T cd03792 179 YILEKYGIDPERP-YITQVSRFDPWKDPFGVIDAYRKVKERVPDPQLVLVGSGATDDPEGWIVYEEVLEYAEGDPDIHVL 257 (372)
T ss_pred HHHHHhCCCCCCc-EEEEEeccccccCcHHHHHHHHHHHhhCCCCEEEEEeCCCCCCchhHHHHHHHHHHhCCCCCeEEE
Confidence 5677788765554 56777877652 123332 22 25678888876531 034567776
Q ss_pred CCC----CCHHHHHhhcCEEEecC---C-hhhHHHHHHcCCcEEEEeCCCCCChHHHHHHHHHcCcEEEEecCCCChhhH
Q 003222 268 PKD----AYTPDFMAASDCMLGKI---G-YGTVSEALAYKLPFVFVRRDYFNEEPFLRNMLEFYQGGVEMIRRDLLTGHW 339 (838)
Q Consensus 268 ~~~----~~~pdlLa~adl~It~g---G-~~Tv~Eal~~GvP~l~iP~~~~~EQ~~Na~~l~~~G~g~~l~~~~~~~~~l 339 (838)
++. ..++++++++|+||..+ | ..++.||+++|+|+|+.+.....| .+.....|..++. .+.+
T Consensus 258 ~~~~~~~~~~~~~~~~ad~~v~~s~~Eg~g~~~lEA~a~G~Pvv~s~~~~~~~------~i~~~~~g~~~~~----~~~~ 327 (372)
T cd03792 258 TLPPVSDLEVNALQRASTVVLQKSIREGFGLTVTEALWKGKPVIAGPVGGIPL------QIEDGETGFLVDT----VEEA 327 (372)
T ss_pred ecCCCCHHHHHHHHHhCeEEEeCCCccCCCHHHHHHHHcCCCEEEcCCCCchh------hcccCCceEEeCC----cHHH
Confidence 664 34568999999999644 2 358999999999999977444333 3555566776642 3466
Q ss_pred HHHHHHHhhCC
Q 003222 340 KPYLERAISLK 350 (838)
Q Consensus 340 ~~~l~~ll~~~ 350 (838)
..+|.++++++
T Consensus 328 a~~i~~ll~~~ 338 (372)
T cd03792 328 AVRILYLLRDP 338 (372)
T ss_pred HHHHHHHHcCH
Confidence 77888888654
|
The catalyzing activity includes the phosphorolysis of trehalose, which produce alpha-Glc-1-P and glucose, and the subsequent synthesis of trehalose. This family is most closely related to the GT1 family of glycosyltransferases. |
| >cd05844 GT1_like_7 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds | Back alignment and domain information |
|---|
Probab=98.63 E-value=3.2e-06 Score=94.29 Aligned_cols=119 Identities=18% Similarity=0.080 Sum_probs=83.0
Q ss_pred cEEEEEcCCCCch---hhhHHh---hC--CCCcEEEEeCCCCC---------C--CCCCeEECCCCC--CHHHHHhhcCE
Q 003222 224 KLLILNFGGQPAG---WKLKEE---YL--PSGWKCLVCGASDS---------Q--LPPNFIKLPKDA--YTPDFMAASDC 282 (838)
Q Consensus 224 ~~Vlvs~Gs~~~~---~~ll~~---l~--~~~~~~vv~G~~~~---------~--lp~nv~~~~~~~--~~pdlLa~adl 282 (838)
+.++++.|+.... ..++++ +. .+++.++++|.... . ++.+|++.++.+ .++++|+.+|+
T Consensus 188 ~~~i~~~G~~~~~K~~~~li~a~~~l~~~~~~~~l~ivG~g~~~~~~~~~~~~~~~~~~v~~~g~~~~~~l~~~~~~ad~ 267 (367)
T cd05844 188 PPRILFVGRFVEKKGPLLLLEAFARLARRVPEVRLVIIGDGPLLAALEALARALGLGGRVTFLGAQPHAEVRELMRRARI 267 (367)
T ss_pred CcEEEEEEeeccccChHHHHHHHHHHHHhCCCeEEEEEeCchHHHHHHHHHHHcCCCCeEEECCCCCHHHHHHHHHhCCE
Confidence 3456677766542 223332 22 24678888886531 1 467899888874 47789999999
Q ss_pred EEecC----------ChhhHHHHHHcCCcEEEEeCCCCCChHHHHHHHHHcCcEEEEecCCCChhhHHHHHHHHhhCC
Q 003222 283 MLGKI----------GYGTVSEALAYKLPFVFVRRDYFNEEPFLRNMLEFYQGGVEMIRRDLLTGHWKPYLERAISLK 350 (838)
Q Consensus 283 ~It~g----------G~~Tv~Eal~~GvP~l~iP~~~~~EQ~~Na~~l~~~G~g~~l~~~~~~~~~l~~~l~~ll~~~ 350 (838)
+|..+ -.+++.||+++|+|+|+.+... +.+.+...+.|..++..+ .+.+.++|.++++++
T Consensus 268 ~v~ps~~~~~~~~E~~~~~~~EA~a~G~PvI~s~~~~------~~e~i~~~~~g~~~~~~d--~~~l~~~i~~l~~~~ 337 (367)
T cd05844 268 FLQPSVTAPSGDAEGLPVVLLEAQASGVPVVATRHGG------IPEAVEDGETGLLVPEGD--VAALAAALGRLLADP 337 (367)
T ss_pred EEECcccCCCCCccCCchHHHHHHHcCCCEEEeCCCC------chhheecCCeeEEECCCC--HHHHHHHHHHHHcCH
Confidence 98532 2468999999999999987432 445567778888887655 468899999998755
|
The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center |
| >PRK09922 UDP-D-galactose:(glucosyl)lipopolysaccharide-1,6-D-galactosyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.62 E-value=1.7e-06 Score=97.04 Aligned_cols=122 Identities=15% Similarity=0.129 Sum_probs=82.3
Q ss_pred cEEEEEcCCCCc----h-hhhHHhh--CCCCcEEEEeCCCCC-----------CCCCCeEECCCCCC----HHHHHhhcC
Q 003222 224 KLLILNFGGQPA----G-WKLKEEY--LPSGWKCLVCGASDS-----------QLPPNFIKLPKDAY----TPDFMAASD 281 (838)
Q Consensus 224 ~~Vlvs~Gs~~~----~-~~ll~~l--~~~~~~~vv~G~~~~-----------~lp~nv~~~~~~~~----~pdlLa~ad 281 (838)
+.++++.|.... + ..+++++ +..++.++++|.... .++++|++.|++.. ++++++.+|
T Consensus 180 ~~~i~~~Grl~~~~~k~~~~l~~a~~~~~~~~~l~ivG~g~~~~~l~~~~~~~~l~~~v~f~G~~~~~~~~~~~~~~~~d 259 (359)
T PRK09922 180 PAVFLYVGRLKFEGQKNVKELFDGLSQTTGEWQLHIIGDGSDFEKCKAYSRELGIEQRIIWHGWQSQPWEVVQQKIKNVS 259 (359)
T ss_pred CcEEEEEEEEecccCcCHHHHHHHHHhhCCCeEEEEEeCCccHHHHHHHHHHcCCCCeEEEecccCCcHHHHHHHHhcCc
Confidence 456677776532 1 2344433 234678888886542 14678999998754 456677799
Q ss_pred EEEecC----ChhhHHHHHHcCCcEEEEe-CCCCCChHHHHHHHHHcCcEEEEecCCCChhhHHHHHHHHhhCCCCc
Q 003222 282 CMLGKI----GYGTVSEALAYKLPFVFVR-RDYFNEEPFLRNMLEFYQGGVEMIRRDLLTGHWKPYLERAISLKPCY 353 (838)
Q Consensus 282 l~It~g----G~~Tv~Eal~~GvP~l~iP-~~~~~EQ~~Na~~l~~~G~g~~l~~~~~~~~~l~~~l~~ll~~~~~~ 353 (838)
++|... -..++.|||++|+|+|+.. ..+. .+.++....|..++..+ .+.+.++|.++++++..+
T Consensus 260 ~~v~~s~~Egf~~~~lEAma~G~Pvv~s~~~~g~------~eiv~~~~~G~lv~~~d--~~~la~~i~~l~~~~~~~ 328 (359)
T PRK09922 260 ALLLTSKFEGFPMTLLEAMSYGIPCISSDCMSGP------RDIIKPGLNGELYTPGN--IDEFVGKLNKVISGEVKY 328 (359)
T ss_pred EEEECCcccCcChHHHHHHHcCCCEEEeCCCCCh------HHHccCCCceEEECCCC--HHHHHHHHHHHHhCcccC
Confidence 999642 2468999999999999976 3221 23455556688887665 578999999999887433
|
|
| >PRK00654 glgA glycogen synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.53 E-value=1.4e-05 Score=92.99 Aligned_cols=137 Identities=18% Similarity=0.140 Sum_probs=86.7
Q ss_pred hHHHHHHhCCCCCCcEEEEEcCCCCch--h-hhHH---hhCCCCcEEEEeCCCCC-----------CCCCCeEE-CCCCC
Q 003222 210 RKEVRKELGIEDDVKLLILNFGGQPAG--W-KLKE---EYLPSGWKCLVCGASDS-----------QLPPNFIK-LPKDA 271 (838)
Q Consensus 210 ~~~~r~~l~~~~~~~~Vlvs~Gs~~~~--~-~ll~---~l~~~~~~~vv~G~~~~-----------~lp~nv~~-~~~~~ 271 (838)
++.+++.++++++...++++.|..... . .+++ .+...++.+++.|...+ .++.++.+ .+|..
T Consensus 268 k~~l~~~~gl~~~~~~~i~~vGRl~~~KG~~~li~a~~~l~~~~~~lvivG~g~~~~~~~l~~l~~~~~~~v~~~~g~~~ 347 (466)
T PRK00654 268 KRALQERFGLPDDDAPLFAMVSRLTEQKGLDLVLEALPELLEQGGQLVLLGTGDPELEEAFRALAARYPGKVGVQIGYDE 347 (466)
T ss_pred HHHHHHHhCCCCCCCcEEEEeeccccccChHHHHHHHHHHHhcCCEEEEEecCcHHHHHHHHHHHHHCCCcEEEEEeCCH
Confidence 346788889875445567777877652 2 2333 23334678888886532 14566653 46654
Q ss_pred C-HHHHHhhcCEEEecC---Ch-hhHHHHHHcCCcEEEEeCCCCCChHHHHHHHHHcCcEEEEecCCCChhhHHHHHHHH
Q 003222 272 Y-TPDFMAASDCMLGKI---GY-GTVSEALAYKLPFVFVRRDYFNEEPFLRNMLEFYQGGVEMIRRDLLTGHWKPYLERA 346 (838)
Q Consensus 272 ~-~pdlLa~adl~It~g---G~-~Tv~Eal~~GvP~l~iP~~~~~EQ~~Na~~l~~~G~g~~l~~~~~~~~~l~~~l~~l 346 (838)
. ++.+++.||+||.-+ |+ .+.+|||++|+|.|+....+..|.-.+...-...+.|..++..+ ++.+.++|.++
T Consensus 348 ~~~~~~~~~aDv~v~PS~~E~~gl~~lEAma~G~p~V~~~~gG~~e~v~~~~~~~~~~~G~lv~~~d--~~~la~~i~~~ 425 (466)
T PRK00654 348 ALAHRIYAGADMFLMPSRFEPCGLTQLYALRYGTLPIVRRTGGLADTVIDYNPEDGEATGFVFDDFN--AEDLLRALRRA 425 (466)
T ss_pred HHHHHHHhhCCEEEeCCCCCCchHHHHHHHHCCCCEEEeCCCCccceeecCCCCCCCCceEEeCCCC--HHHHHHHHHHH
Confidence 4 347899999999632 22 58999999999999976544444311100001226788887665 46888888888
Q ss_pred hh
Q 003222 347 IS 348 (838)
Q Consensus 347 l~ 348 (838)
++
T Consensus 426 l~ 427 (466)
T PRK00654 426 LE 427 (466)
T ss_pred HH
Confidence 75
|
|
| >TIGR02472 sucr_P_syn_N sucrose-phosphate synthase, putative, glycosyltransferase domain | Back alignment and domain information |
|---|
Probab=98.50 E-value=3.1e-05 Score=89.34 Aligned_cols=83 Identities=19% Similarity=0.115 Sum_probs=61.2
Q ss_pred CCCCeEECCCC--CCHHHHHhhc----CEEEecC---C-hhhHHHHHHcCCcEEEEeCCCCCChHHHHHHHHHcCcEEEE
Q 003222 260 LPPNFIKLPKD--AYTPDFMAAS----DCMLGKI---G-YGTVSEALAYKLPFVFVRRDYFNEEPFLRNMLEFYQGGVEM 329 (838)
Q Consensus 260 lp~nv~~~~~~--~~~pdlLa~a----dl~It~g---G-~~Tv~Eal~~GvP~l~iP~~~~~EQ~~Na~~l~~~G~g~~l 329 (838)
+.++|++.++. +.++++|+.+ |+||..+ | ..++.|||++|+|+|+..... +.+.+.....|+.+
T Consensus 315 l~~~V~f~g~~~~~~~~~~~~~a~~~~Dv~v~pS~~E~fg~~~lEAma~G~PvV~s~~gg------~~eiv~~~~~G~lv 388 (439)
T TIGR02472 315 LYGKVAYPKHHRPDDVPELYRLAARSRGIFVNPALTEPFGLTLLEAAACGLPIVATDDGG------PRDIIANCRNGLLV 388 (439)
T ss_pred CCceEEecCCCCHHHHHHHHHHHhhcCCEEecccccCCcccHHHHHHHhCCCEEEeCCCC------cHHHhcCCCcEEEe
Confidence 35667777764 4678888866 9999643 3 358999999999999987433 33445555678888
Q ss_pred ecCCCChhhHHHHHHHHhhCC
Q 003222 330 IRRDLLTGHWKPYLERAISLK 350 (838)
Q Consensus 330 ~~~~~~~~~l~~~l~~ll~~~ 350 (838)
+..+ ++.+.++|.++++++
T Consensus 389 ~~~d--~~~la~~i~~ll~~~ 407 (439)
T TIGR02472 389 DVLD--LEAIASALEDALSDS 407 (439)
T ss_pred CCCC--HHHHHHHHHHHHhCH
Confidence 8766 468899999998765
|
This family consists of the N-terminal regions, or in some cases the entirety, of bacterial proteins closely related to plant sucrose-phosphate synthases (SPS). The C-terminal domain (TIGR02471), found with most members of this family, resembles both bona fide plant sucrose-phosphate phosphatases (SPP) and the SPP-like domain of plant SPS. At least two members of this family lack the SPP-like domain, which may have binding or regulatory rather than enzymatic activity by analogy to plant SPS. This enzyme produces sucrose 6-phosphate and UDP from UDP-glucose and D-fructose 6-phosphate, and may be encoded near the gene for fructokinase. |
| >PRK15427 colanic acid biosynthesis glycosyltransferase WcaL; Provisional | Back alignment and domain information |
|---|
Probab=98.48 E-value=1.4e-05 Score=91.24 Aligned_cols=121 Identities=15% Similarity=0.069 Sum_probs=84.1
Q ss_pred CCcEEEEEcCCCCch---hhhHHh---hC--CCCcEEEEeCCCCC-----------CCCCCeEECCCCC--CHHHHHhhc
Q 003222 222 DVKLLILNFGGQPAG---WKLKEE---YL--PSGWKCLVCGASDS-----------QLPPNFIKLPKDA--YTPDFMAAS 280 (838)
Q Consensus 222 ~~~~Vlvs~Gs~~~~---~~ll~~---l~--~~~~~~vv~G~~~~-----------~lp~nv~~~~~~~--~~pdlLa~a 280 (838)
+.++.+++.|..... ..++++ +. .+++.++++|..+. .+.++|.+.++.+ +++++|+.|
T Consensus 220 ~~~~~il~vGrl~~~Kg~~~ll~a~~~l~~~~~~~~l~ivG~G~~~~~l~~~~~~~~l~~~V~~~G~~~~~el~~~l~~a 299 (406)
T PRK15427 220 ATPLEIISVARLTEKKGLHVAIEACRQLKEQGVAFRYRILGIGPWERRLRTLIEQYQLEDVVEMPGFKPSHEVKAMLDDA 299 (406)
T ss_pred CCCeEEEEEeCcchhcCHHHHHHHHHHHHhhCCCEEEEEEECchhHHHHHHHHHHcCCCCeEEEeCCCCHHHHHHHHHhC
Confidence 345667788877653 223332 22 24677888886542 1457899988874 567899999
Q ss_pred CEEEec---------CCh-hhHHHHHHcCCcEEEEeCCCCCChHHHHHHHHHcCcEEEEecCCCChhhHHHHHHHHhh-C
Q 003222 281 DCMLGK---------IGY-GTVSEALAYKLPFVFVRRDYFNEEPFLRNMLEFYQGGVEMIRRDLLTGHWKPYLERAIS-L 349 (838)
Q Consensus 281 dl~It~---------gG~-~Tv~Eal~~GvP~l~iP~~~~~EQ~~Na~~l~~~G~g~~l~~~~~~~~~l~~~l~~ll~-~ 349 (838)
|+||.- -|+ ++++|||++|+|+|+....+.. +.++....|+.++..+ ++.+.++|.++++ +
T Consensus 300 Dv~v~pS~~~~~g~~Eg~p~~llEAma~G~PVI~t~~~g~~------E~v~~~~~G~lv~~~d--~~~la~ai~~l~~~d 371 (406)
T PRK15427 300 DVFLLPSVTGADGDMEGIPVALMEAMAVGIPVVSTLHSGIP------ELVEADKSGWLVPEND--AQALAQRLAAFSQLD 371 (406)
T ss_pred CEEEECCccCCCCCccCccHHHHHHHhCCCCEEEeCCCCch------hhhcCCCceEEeCCCC--HHHHHHHHHHHHhCC
Confidence 999953 233 5789999999999998754333 3355566788887666 5789999999987 5
Q ss_pred C
Q 003222 350 K 350 (838)
Q Consensus 350 ~ 350 (838)
+
T Consensus 372 ~ 372 (406)
T PRK15427 372 T 372 (406)
T ss_pred H
Confidence 5
|
|
| >PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.47 E-value=3e-05 Score=89.58 Aligned_cols=220 Identities=12% Similarity=0.023 Sum_probs=120.5
Q ss_pred HHHHhhccHHHHHHHHHHHHhcCCCcEEEECC-C--chHHHHHHHhCCcEEEEecCchh-----HHH-Hhhhhh------
Q 003222 95 YSETAVAPRKSILKDEVEWLNSIKADLVVSDV-V--PVACRAAADAGIRSVCVTNFSWD-----FIY-AEYVMA------ 159 (838)
Q Consensus 95 ~~~~~~~~~~~~l~~~~~~L~~~kPDlVVsD~-~--~~~~~aA~~lgIP~V~is~~~~~-----~i~-~~~~~~------ 159 (838)
+.......+..-+.....++++.+||+|.+.. . ..+.++|...++|.+..+-.++. ... ..+...
T Consensus 257 ~~~~~~~~~~~~~~~l~~~ir~~rpDIVHt~~~~a~l~g~laA~lagvpviv~~~h~~~~~~~~r~~~~e~~~~~~a~~i 336 (578)
T PRK15490 257 LLSHLPPVCKYGIKHLVPHLCERKLDYLSVWQDGACLMIALAALIAGVPRIQLGLRGLPPVVRKRLFKPEYEPLYQALAV 336 (578)
T ss_pred HHhcCChHHHHHHHHHHHHHHHcCCCEEEEcCcccHHHHHHHHHhcCCCEEEEeecccCCcchhhHHHHHHHHhhhhcee
Confidence 44433223334455678899999999999875 2 35777888899999765321110 000 000000
Q ss_pred ccc-----chHHHHHHHHhhccccceEEecCCCCCCCCCCceeecCcccccCCc---ChHHHHHH--hCCCCCCcEEEEE
Q 003222 160 AGH-----HHRSIVWQIAEDYSHCEFLIRLPGYCPMPAFRDVIDVPLVVRRLHK---SRKEVRKE--LGIEDDVKLLILN 229 (838)
Q Consensus 160 ~~~-----~~~~i~~~l~~~y~~~d~ll~~~~~~~~p~~~~v~~ip~~~~~~~~---~~~~~r~~--l~~~~~~~~Vlvs 229 (838)
... ....+.+.+.+.+. . .+....+++.|+......+ .+...++. .+++++. .++.+
T Consensus 337 ~~~sd~v~~s~~v~~~l~~~lg-------i-----p~~KI~VIyNGVD~~rf~p~~~~~~~~r~~~~~~l~~~~-~vIg~ 403 (578)
T PRK15490 337 VPGVDFMSNNHCVTRHYADWLK-------L-----EAKHFQVVYNGVLPPSTEPSSEVPHKIWQQFTQKTQDAD-TTIGG 403 (578)
T ss_pred EecchhhhccHHHHHHHHHHhC-------C-----CHHHEEEEeCCcchhhcCccchhhHHHHHHhhhccCCCC-cEEEE
Confidence 000 00001111111110 0 0122234555553321111 11123332 2333333 34555
Q ss_pred cCCCCch---hhhHHh---hC--CCCcEEEEeCCCCCC-----------CCCCeEECCCCCCHHHHHhhcCEEEec---C
Q 003222 230 FGGQPAG---WKLKEE---YL--PSGWKCLVCGASDSQ-----------LPPNFIKLPKDAYTPDFMAASDCMLGK---I 287 (838)
Q Consensus 230 ~Gs~~~~---~~ll~~---l~--~~~~~~vv~G~~~~~-----------lp~nv~~~~~~~~~pdlLa~adl~It~---g 287 (838)
.|..... ..++.. +. .+++.++++|..... +.++|+++++.++++++|+.+|+||.. -
T Consensus 404 VgRl~~~Kg~~~LI~A~a~llk~~pdirLvIVGdG~~~eeLk~la~elgL~d~V~FlG~~~Dv~~~LaaADVfVlPS~~E 483 (578)
T PRK15490 404 VFRFVGDKNPFAWIDFAARYLQHHPATRFVLVGDGDLRAEAQKRAEQLGILERILFVGASRDVGYWLQKMNVFILFSRYE 483 (578)
T ss_pred EEEEehhcCHHHHHHHHHHHHhHCCCeEEEEEeCchhHHHHHHHHHHcCCCCcEEECCChhhHHHHHHhCCEEEEccccc
Confidence 5544332 223332 22 256788888865421 457899999988999999999999963 2
Q ss_pred C-hhhHHHHHHcCCcEEEEeCCCCCChHHHHHHHHHcCcEEEEecCC
Q 003222 288 G-YGTVSEALAYKLPFVFVRRDYFNEEPFLRNMLEFYQGGVEMIRRD 333 (838)
Q Consensus 288 G-~~Tv~Eal~~GvP~l~iP~~~~~EQ~~Na~~l~~~G~g~~l~~~~ 333 (838)
| .+++.|||++|+|+|+..... +.+.++....|..++..+
T Consensus 484 Gfp~vlLEAMA~GlPVVATdvGG------~~EiV~dG~nG~LVp~~D 524 (578)
T PRK15490 484 GLPNVLIEAQMVGVPVISTPAGG------SAECFIEGVSGFILDDAQ 524 (578)
T ss_pred CccHHHHHHHHhCCCEEEeCCCC------cHHHcccCCcEEEECCCC
Confidence 3 468999999999999987433 345566777898888765
|
|
| >TIGR02095 glgA glycogen/starch synthases, ADP-glucose type | Back alignment and domain information |
|---|
Probab=98.47 E-value=2.7e-05 Score=90.71 Aligned_cols=131 Identities=21% Similarity=0.166 Sum_probs=85.6
Q ss_pred hHHHHHHhCCCC-CCcEEEEEcCCCCch--hh-hHH---hhCCCCcEEEEeCCCCCC-----------CCCCeEEC-CCC
Q 003222 210 RKEVRKELGIED-DVKLLILNFGGQPAG--WK-LKE---EYLPSGWKCLVCGASDSQ-----------LPPNFIKL-PKD 270 (838)
Q Consensus 210 ~~~~r~~l~~~~-~~~~Vlvs~Gs~~~~--~~-ll~---~l~~~~~~~vv~G~~~~~-----------lp~nv~~~-~~~ 270 (838)
+..+++.++++. +...++++.|..... .+ +++ .+...+++++++|...+. .+.++.+. ++.
T Consensus 276 k~~l~~~~gl~~~~~~~~i~~vGrl~~~Kg~~~li~a~~~l~~~~~~lvi~G~g~~~~~~~l~~~~~~~~~~v~~~~~~~ 355 (473)
T TIGR02095 276 KEALQEELGLPVDDDVPLFGVISRLTQQKGVDLLLAALPELLELGGQLVVLGTGDPELEEALRELAERYPGNVRVIIGYD 355 (473)
T ss_pred HHHHHHHcCCCccCCCCEEEEEecCccccChHHHHHHHHHHHHcCcEEEEECCCCHHHHHHHHHHHHHCCCcEEEEEcCC
Confidence 346788888864 234466777777652 22 233 233345788888876421 36667654 333
Q ss_pred CC-HHHHHhhcCEEEecC---Ch-hhHHHHHHcCCcEEEEeCCCCCChHHHHHHHHHc------CcEEEEecCCCChhhH
Q 003222 271 AY-TPDFMAASDCMLGKI---GY-GTVSEALAYKLPFVFVRRDYFNEEPFLRNMLEFY------QGGVEMIRRDLLTGHW 339 (838)
Q Consensus 271 ~~-~pdlLa~adl~It~g---G~-~Tv~Eal~~GvP~l~iP~~~~~EQ~~Na~~l~~~------G~g~~l~~~~~~~~~l 339 (838)
.. ++.+++.||++|.-+ |+ .+.+|||++|+|+|+....+..|. +... +.|+.++..+ ++.+
T Consensus 356 ~~~~~~~~~~aDv~l~pS~~E~~gl~~lEAma~G~pvI~s~~gg~~e~------v~~~~~~~~~~~G~l~~~~d--~~~l 427 (473)
T TIGR02095 356 EALAHLIYAGADFILMPSRFEPCGLTQLYAMRYGTVPIVRRTGGLADT------VVDGDPEAESGTGFLFEEYD--PGAL 427 (473)
T ss_pred HHHHHHHHHhCCEEEeCCCcCCcHHHHHHHHHCCCCeEEccCCCccce------EecCCCCCCCCceEEeCCCC--HHHH
Confidence 22 357899999999643 32 488999999999999775544443 3333 7788887655 4688
Q ss_pred HHHHHHHhh
Q 003222 340 KPYLERAIS 348 (838)
Q Consensus 340 ~~~l~~ll~ 348 (838)
..+|.+++.
T Consensus 428 a~~i~~~l~ 436 (473)
T TIGR02095 428 LAALSRALR 436 (473)
T ss_pred HHHHHHHHH
Confidence 888888876
|
This family consists of glycogen (or starch) synthases that use ADP-glucose (EC 2.4.1.21), rather than UDP-glucose (EC 2.4.1.11) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate. |
| >PRK14610 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional | Back alignment and domain information |
|---|
Probab=98.46 E-value=4.3e-06 Score=90.42 Aligned_cols=115 Identities=17% Similarity=0.131 Sum_probs=81.4
Q ss_pred hHHHHHHHHHHHHHhCCCCCCCEEEEEEeCCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhhhcCCCC
Q 003222 610 AAYVAGTILVLMTELGVRFEDSISMLVSSAVPEGKGVSSSASVEVASMSAIAAAHGLNIHPRDLALLCQKVENHIVGAPC 689 (838)
Q Consensus 610 ~~y~~g~i~~~~~~~g~~~~~g~~i~i~s~iP~g~GLgSSAA~~va~~~al~~l~~~~l~~~ela~~a~~~E~~~~G~~~ 689 (838)
.|++.-++..+.+..|.. .|++|.+.++||.|+|||||||-.+++..+++++++ ++..++.++|.. -
T Consensus 65 ~Nlv~kA~~~l~~~~~~~--~g~~i~i~K~IP~~aGLGggSs~aaa~L~~ln~l~~--ls~~~l~~ia~~---------l 131 (283)
T PRK14610 65 NNTVQRAIGLLLRHSPVR--TNVYVKVIKNIPVSAGLAGGSADAAAVIRLLGKLWG--IDEQILNELALS---------V 131 (283)
T ss_pred CcHHHHHHHHHHHHhCCC--CCeEEEEEcCCCCCCcCCccHHHHHHHHHHHHHHhC--CCHHHHHHHHHH---------h
Confidence 577777777777666754 599999999999999999999999999999999996 689999999885 3
Q ss_pred ChhhHHHhhcCCCCeEEEEEecCCceeeeecc-CCCeEEEEEeC-CCCCcCCCCch
Q 003222 690 GVMDQMASACGEANKLLAMVCQPAELLGVVEI-PSHIRFWGIDS-GIRHSVGGADY 743 (838)
Q Consensus 690 G~mDq~a~~~G~~~~~l~~d~~~~~~~~~v~~-~~~~~~vi~~s-~~~~~~~~~~y 743 (838)
| .|--.+++||. + +.. .-.+..++++. +....++|+.. ++.=+ +..-|
T Consensus 132 G-aDvPffl~g~~--a-~~~-G~Ge~l~~l~~~~~~~~~vl~~p~~~~~s-T~~vy 181 (283)
T PRK14610 132 G-SDVPACLDSKT--L-FVR-GIGEDILLLPDLSLPTYVVLVAPKGKFLS-TRKVF 181 (283)
T ss_pred C-CCCcEEEECCe--E-EEE-ecccEEEECcccCCCCeEEEEECCCCccC-hHHHH
Confidence 5 58877888874 2 332 33344455532 12223566654 33322 33455
|
|
| >PRK14089 ipid-A-disaccharide synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.40 E-value=2e-06 Score=95.17 Aligned_cols=119 Identities=13% Similarity=0.031 Sum_probs=77.5
Q ss_pred CCcEEEEEcCCCCch-hhhH----H---hhCCCCcEEEEeCCCCCC-----CC--CCeEECCCCCCHHHHHhhcCEEEec
Q 003222 222 DVKLLILNFGGQPAG-WKLK----E---EYLPSGWKCLVCGASDSQ-----LP--PNFIKLPKDAYTPDFMAASDCMLGK 286 (838)
Q Consensus 222 ~~~~Vlvs~Gs~~~~-~~ll----~---~l~~~~~~~vv~G~~~~~-----lp--~nv~~~~~~~~~pdlLa~adl~It~ 286 (838)
+.++|.+..||.... ..++ + .+......+++.+....+ .. ..+.+. ....++|++||++|+.
T Consensus 166 ~~~~I~llPGSR~~Ei~~llP~~~~aa~~L~~~~~~~~i~~a~~~~~i~~~~~~~~~~~~~---~~~~~~m~~aDlal~~ 242 (347)
T PRK14089 166 KEGTIAFMPGSRKSEIKRLMPIFKELAKKLEGKEKILVVPSFFKGKDLKEIYGDISEFEIS---YDTHKALLEAEFAFIC 242 (347)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHHHhhcCcEEEEeCCCcHHHHHHHHhcCCCcEEe---ccHHHHHHhhhHHHhc
Confidence 347899999998863 1111 1 222222456666654311 11 233332 3567999999999999
Q ss_pred CChhhHHHHHHcCCcEEEEeCCCCCChHHHHHHHH---HcCcEEEE-------------ecCCCChhhHHHHHHH
Q 003222 287 IGYGTVSEALAYKLPFVFVRRDYFNEEPFLRNMLE---FYQGGVEM-------------IRRDLLTGHWKPYLER 345 (838)
Q Consensus 287 gG~~Tv~Eal~~GvP~l~iP~~~~~EQ~~Na~~l~---~~G~g~~l-------------~~~~~~~~~l~~~l~~ 345 (838)
+|..|+ |++.+|+|||+.- ....-|..|+++++ ..|.+-.+ -.++.+++.+.+.+.+
T Consensus 243 SGT~TL-E~al~g~P~Vv~Y-k~~~lty~iak~lv~~~~igL~Nii~~~~~~~~vvPEllQ~~~t~~~la~~i~~ 315 (347)
T PRK14089 243 SGTATL-EAALIGTPFVLAY-KAKAIDYFIAKMFVKLKHIGLANIFFDFLGKEPLHPELLQEFVTVENLLKAYKE 315 (347)
T ss_pred CcHHHH-HHHHhCCCEEEEE-eCCHHHHHHHHHHHcCCeeehHHHhcCCCcccccCchhhcccCCHHHHHHHHHH
Confidence 997666 9999999999944 34556788999998 44544444 2355677777777765
|
|
| >PRK15484 lipopolysaccharide 1,2-N-acetylglucosaminetransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.37 E-value=6.9e-05 Score=84.81 Aligned_cols=132 Identities=15% Similarity=0.176 Sum_probs=88.1
Q ss_pred hHHHHHHhCCCCCCcEEEEEcCCCCch---hhhHHh---hC--CCCcEEEEeCCCCC------------------CCCCC
Q 003222 210 RKEVRKELGIEDDVKLLILNFGGQPAG---WKLKEE---YL--PSGWKCLVCGASDS------------------QLPPN 263 (838)
Q Consensus 210 ~~~~r~~l~~~~~~~~Vlvs~Gs~~~~---~~ll~~---l~--~~~~~~vv~G~~~~------------------~lp~n 263 (838)
.+..++.++++++. .++++.|..... ..++++ +. .+++.++++|.... .++.+
T Consensus 180 ~~~~~~~~~~~~~~-~~il~~Grl~~~Kg~~~Li~A~~~l~~~~p~~~lvivG~g~~~~~~~~~~~~~~l~~~~~~l~~~ 258 (380)
T PRK15484 180 QPNLRQQLNISPDE-TVLLYAGRISPDKGILLLMQAFEKLATAHSNLKLVVVGDPTASSKGEKAAYQKKVLEAAKRIGDR 258 (380)
T ss_pred hHHHHHHhCCCCCC-eEEEEeccCccccCHHHHHHHHHHHHHhCCCeEEEEEeCCccccccchhHHHHHHHHHHHhcCCc
Confidence 34566777775444 566777876652 223443 22 25678888875321 13567
Q ss_pred eEECCCCC--CHHHHHhhcCEEEecC----Ch-hhHHHHHHcCCcEEEEeCCCCCChHHHHHHHHHcCcEEEE-ecCCCC
Q 003222 264 FIKLPKDA--YTPDFMAASDCMLGKI----GY-GTVSEALAYKLPFVFVRRDYFNEEPFLRNMLEFYQGGVEM-IRRDLL 335 (838)
Q Consensus 264 v~~~~~~~--~~pdlLa~adl~It~g----G~-~Tv~Eal~~GvP~l~iP~~~~~EQ~~Na~~l~~~G~g~~l-~~~~~~ 335 (838)
+.++++.+ .++++|+.||++|..+ |+ .++.|||++|+|+|+....+ +.+.++....|..+ +..+
T Consensus 259 v~~~G~~~~~~l~~~~~~aDv~v~pS~~~E~f~~~~lEAma~G~PVI~s~~gg------~~Eiv~~~~~G~~l~~~~d-- 330 (380)
T PRK15484 259 CIMLGGQPPEKMHNYYPLADLVVVPSQVEEAFCMVAVEAMAAGKPVLASTKGG------ITEFVLEGITGYHLAEPMT-- 330 (380)
T ss_pred EEEeCCCCHHHHHHHHHhCCEEEeCCCCccccccHHHHHHHcCCCEEEeCCCC------cHhhcccCCceEEEeCCCC--
Confidence 88888764 5779999999999643 32 57889999999999987533 23445555668644 4444
Q ss_pred hhhHHHHHHHHhhCC
Q 003222 336 TGHWKPYLERAISLK 350 (838)
Q Consensus 336 ~~~l~~~l~~ll~~~ 350 (838)
++.+.++|.++++++
T Consensus 331 ~~~la~~I~~ll~d~ 345 (380)
T PRK15484 331 SDSIISDINRTLADP 345 (380)
T ss_pred HHHHHHHHHHHHcCH
Confidence 578999999999765
|
|
| >PLN02846 digalactosyldiacylglycerol synthase | Back alignment and domain information |
|---|
Probab=98.36 E-value=6.2e-05 Score=86.29 Aligned_cols=113 Identities=14% Similarity=0.088 Sum_probs=71.8
Q ss_pred EEEEcCCCCch--h-hhHHh---hC--CCCcEEEEeCCCCCC---------CCCCeE-ECCCCCCHHHHHhhcCEEEec-
Q 003222 226 LILNFGGQPAG--W-KLKEE---YL--PSGWKCLVCGASDSQ---------LPPNFI-KLPKDAYTPDFMAASDCMLGK- 286 (838)
Q Consensus 226 Vlvs~Gs~~~~--~-~ll~~---l~--~~~~~~vv~G~~~~~---------lp~nv~-~~~~~~~~pdlLa~adl~It~- 286 (838)
++++.|..... . .++++ +. .++++++++|..+.. ++-++. +.++ ....++++.+|+||.-
T Consensus 230 ~~l~vGRL~~eK~~~~Li~a~~~l~~~~~~~~l~ivGdGp~~~~L~~~a~~l~l~~~vf~G~-~~~~~~~~~~DvFv~pS 308 (462)
T PLN02846 230 GAYYIGKMVWSKGYKELLKLLHKHQKELSGLEVDLYGSGEDSDEVKAAAEKLELDVRVYPGR-DHADPLFHDYKVFLNPS 308 (462)
T ss_pred EEEEEecCcccCCHHHHHHHHHHHHhhCCCeEEEEECCCccHHHHHHHHHhcCCcEEEECCC-CCHHHHHHhCCEEEECC
Confidence 56778877653 1 23332 22 256788888877532 222333 3454 3334799999999964
Q ss_pred ---CChhhHHHHHHcCCcEEEEeCCCCCChHHHHHHHHHcCcEEEEecCCCChhhHHHHHHHHhhCC
Q 003222 287 ---IGYGTVSEALAYKLPFVFVRRDYFNEEPFLRNMLEFYQGGVEMIRRDLLTGHWKPYLERAISLK 350 (838)
Q Consensus 287 ---gG~~Tv~Eal~~GvP~l~iP~~~~~EQ~~Na~~l~~~G~g~~l~~~~~~~~~l~~~l~~ll~~~ 350 (838)
+-.+++.|||++|+|+|+...+. . +.+...+.|..++ + .+.+..++.+++.++
T Consensus 309 ~~Et~g~v~lEAmA~G~PVVa~~~~~-~------~~v~~~~ng~~~~--~--~~~~a~ai~~~l~~~ 364 (462)
T PLN02846 309 TTDVVCTTTAEALAMGKIVVCANHPS-N------EFFKQFPNCRTYD--D--GKGFVRATLKALAEE 364 (462)
T ss_pred CcccchHHHHHHHHcCCcEEEecCCC-c------ceeecCCceEecC--C--HHHHHHHHHHHHccC
Confidence 33358999999999999987432 2 3455556665552 2 467888888888643
|
|
| >KOG3349 consensus Predicted glycosyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.36 E-value=5e-06 Score=78.23 Aligned_cols=111 Identities=14% Similarity=0.107 Sum_probs=81.2
Q ss_pred cEEEEEcCCCCch--------hhhHHhhCCCCc--EEEEeCCCCCC-------C--CCC--eEECCCCCCHHHHHhhcCE
Q 003222 224 KLLILNFGGQPAG--------WKLKEEYLPSGW--KCLVCGASDSQ-------L--PPN--FIKLPKDAYTPDFMAASDC 282 (838)
Q Consensus 224 ~~Vlvs~Gs~~~~--------~~ll~~l~~~~~--~~vv~G~~~~~-------l--p~n--v~~~~~~~~~pdlLa~adl 282 (838)
..++|+.|+.... .+++++|..-++ .++-.|++..- . -.. +..+.|.+.+.+.++.||+
T Consensus 4 ~~vFVTVGtT~Fd~LI~~Vl~~~~~~~L~k~G~~kLiiQ~Grg~~~~~d~~~~~~k~~gl~id~y~f~psl~e~I~~Adl 83 (170)
T KOG3349|consen 4 MTVFVTVGTTSFDDLISCVLSEEFLQELQKRGFTKLIIQIGRGQPFFGDPIDLIRKNGGLTIDGYDFSPSLTEDIRSADL 83 (170)
T ss_pred eEEEEEeccccHHHHHHHHcCHHHHHHHHHcCccEEEEEecCCccCCCCHHHhhcccCCeEEEEEecCccHHHHHhhccE
Confidence 4789999988763 123334444444 44556876421 1 223 3344666777899999999
Q ss_pred EEecCChhhHHHHHHcCCcEEEEeCCC--CCChHHHHHHHHHcCcEEEEecCCC
Q 003222 283 MLGKIGYGTVSEALAYKLPFVFVRRDY--FNEEPFLRNMLEFYQGGVEMIRRDL 334 (838)
Q Consensus 283 ~It~gG~~Tv~Eal~~GvP~l~iP~~~--~~EQ~~Na~~l~~~G~g~~l~~~~~ 334 (838)
+|+|+|.||++|.+..|+|.|+++... .+.|...|+.|++.|+-......++
T Consensus 84 VIsHAGaGS~letL~l~KPlivVvNd~LMDNHQ~ELA~qL~~egyL~~C~ps~L 137 (170)
T KOG3349|consen 84 VISHAGAGSCLETLRLGKPLIVVVNDSLMDNHQLELAKQLAEEGYLYYCTPSTL 137 (170)
T ss_pred EEecCCcchHHHHHHcCCCEEEEeChHhhhhHHHHHHHHHHhcCcEEEeeccch
Confidence 999999999999999999999998642 3457789999999999988887665
|
|
| >PF02684 LpxB: Lipid-A-disaccharide synthetase; InterPro: IPR003835 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases | Back alignment and domain information |
|---|
Probab=98.35 E-value=2.4e-05 Score=87.18 Aligned_cols=293 Identities=19% Similarity=0.194 Sum_probs=154.4
Q ss_pred eecCCCcccHHHHHHHHHHHHHCCCeEEEEeCCCCcccccccCCCceeeeeeccCCCcccccccc-cChHHHHHHHHHHh
Q 003222 21 YVTGHGFGHATRVVEVVRNLISAGHDVHVVTGAPDFVFTSEIQSPRLFIRKVLLDCGAVQADALT-VDRLASLEKYSETA 99 (838)
Q Consensus 21 ~v~g~G~GHv~r~laLA~~L~~~Gh~V~~v~~~~~~~~~~~i~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~l~~~~~~~ 99 (838)
.+.|.-.|-. -+..|+++|+++..++.|++-....+..... + . .++.. .++ +.....+.++..+
T Consensus 3 i~AGE~SGD~-~ga~Li~~Lk~~~p~~~~~GvGG~~M~~~G~-----~--~-l~d~~-----~lsvmG~~Evl~~l~~~- 67 (373)
T PF02684_consen 3 ISAGEASGDL-HGARLIRALKARDPDIEFYGVGGPRMQAAGV-----E--S-LFDME-----ELSVMGFVEVLKKLPKL- 67 (373)
T ss_pred EEeeCccHHH-HHHHHHHHHHhhCCCcEEEEEechHHHhCCC-----c--e-ecchH-----HhhhccHHHHHHHHHHH-
Confidence 3455555533 3567889999998888876543222211111 0 0 01110 011 1122234444433
Q ss_pred hccHHHHHHHHHHHHhcCCCcEEE-ECCCchHHHHHH---HhCCc--EEEE-ecCchhHHHHhhhhhcccchHHHHHHHH
Q 003222 100 VAPRKSILKDEVEWLNSIKADLVV-SDVVPVACRAAA---DAGIR--SVCV-TNFSWDFIYAEYVMAAGHHHRSIVWQIA 172 (838)
Q Consensus 100 ~~~~~~~l~~~~~~L~~~kPDlVV-sD~~~~~~~aA~---~lgIP--~V~i-s~~~~~~i~~~~~~~~~~~~~~i~~~l~ 172 (838)
....++..+++++.+||+|| .|++-....+|+ ..|+| ++.+ +.-.|. ++... +..+.
T Consensus 68 ----~~~~~~~~~~~~~~~pd~vIlID~pgFNlrlak~lk~~~~~~~viyYI~PqvWA--Wr~~R----------~~~i~ 131 (373)
T PF02684_consen 68 ----KRLFRKLVERIKEEKPDVVILIDYPGFNLRLAKKLKKRGIPIKVIYYISPQVWA--WRPGR----------AKKIK 131 (373)
T ss_pred ----HHHHHHHHHHHHHcCCCEEEEeCCCCccHHHHHHHHHhCCCceEEEEECCceee--eCccH----------HHHHH
Confidence 23456668889999999998 788766666665 45777 6554 443342 01100 01111
Q ss_pred hhccccceEE-ecCCCCC---CCCC-CceeecCcccc-cCCcChHHHHHHhCCCCCCcEEEEEcCCCCch-h----hhHH
Q 003222 173 EDYSHCEFLI-RLPGYCP---MPAF-RDVIDVPLVVR-RLHKSRKEVRKELGIEDDVKLLILNFGGQPAG-W----KLKE 241 (838)
Q Consensus 173 ~~y~~~d~ll-~~~~~~~---~p~~-~~v~~ip~~~~-~~~~~~~~~r~~l~~~~~~~~Vlvs~Gs~~~~-~----~ll~ 241 (838)
+. +|.++ -+|+... .... ..+++-|.... .+...+...++.+ +++++++|.+.-||.... . .+++
T Consensus 132 ~~---~D~ll~ifPFE~~~y~~~g~~~~~VGHPl~d~~~~~~~~~~~~~~~-l~~~~~iIaLLPGSR~~EI~rllP~~l~ 207 (373)
T PF02684_consen 132 KY---VDHLLVIFPFEPEFYKKHGVPVTYVGHPLLDEVKPEPDRAEAREKL-LDPDKPIIALLPGSRKSEIKRLLPIFLE 207 (373)
T ss_pred HH---HhheeECCcccHHHHhccCCCeEEECCcchhhhccCCCHHHHHHhc-CCCCCcEEEEeCCCCHHHHHHHHHHHHH
Confidence 11 12222 1333210 0000 12334444333 2334456677777 788999999999998753 1 1222
Q ss_pred ---hhC--CCCcEEEEeCCCCC--C--------CCCCeEECCCCCCHHHHHhhcCEEEecCChhhHHHHHHcCCcEEEEe
Q 003222 242 ---EYL--PSGWKCLVCGASDS--Q--------LPPNFIKLPKDAYTPDFMAASDCMLGKIGYGTVSEALAYKLPFVFVR 306 (838)
Q Consensus 242 ---~l~--~~~~~~vv~G~~~~--~--------lp~nv~~~~~~~~~pdlLa~adl~It~gG~~Tv~Eal~~GvP~l~iP 306 (838)
.+. .++.++++...... . .+.++.+.-.....-++|++||+.++.+| +.+.|++.+|+|||++-
T Consensus 208 aa~~l~~~~p~l~fvvp~a~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~m~~ad~al~~SG-TaTLE~Al~g~P~Vv~Y 286 (373)
T PF02684_consen 208 AAKLLKKQRPDLQFVVPVAPEVHEELIEEILAEYPPDVSIVIIEGESYDAMAAADAALAASG-TATLEAALLGVPMVVAY 286 (373)
T ss_pred HHHHHHHhCCCeEEEEecCCHHHHHHHHHHHHhhCCCCeEEEcCCchHHHHHhCcchhhcCC-HHHHHHHHhCCCEEEEE
Confidence 122 25667766533221 1 12333222112234589999999999999 88999999999999987
Q ss_pred CCCCCChHHHHHHHHHcCcEEEE------------ecCCCChhhHHHHHHHHhhCC
Q 003222 307 RDYFNEEPFLRNMLEFYQGGVEM------------IRRDLLTGHWKPYLERAISLK 350 (838)
Q Consensus 307 ~~~~~EQ~~Na~~l~~~G~g~~l------------~~~~~~~~~l~~~l~~ll~~~ 350 (838)
.... =....++++.+..+--.. -.++.+++.+...+.+++.++
T Consensus 287 k~~~-lt~~iak~lvk~~~isL~Niia~~~v~PEliQ~~~~~~~i~~~~~~ll~~~ 341 (373)
T PF02684_consen 287 KVSP-LTYFIAKRLVKVKYISLPNIIAGREVVPELIQEDATPENIAAELLELLENP 341 (373)
T ss_pred cCcH-HHHHHHHHhhcCCEeechhhhcCCCcchhhhcccCCHHHHHHHHHHHhcCH
Confidence 5332 223577888765542111 122345556666666666544
|
These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. These enzymes belong to the glycosyltransferase family 19 GT19 from CAZY. Lipid-A-disaccharide synthetase 2.4.1.182 from EC is involved with acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase 2.3.1.129 from EC and tetraacyldisaccharide 4'-kinase 2.7.1.130 from EC in the biosynthesis of the phosphorylated glycolipid, lipid A, in the outer membrane of Escherichia coli and other bacteria. These enzymes catalyse the first disaccharide step in the synthesis of lipid-A-disaccharide.; GO: 0008915 lipid-A-disaccharide synthase activity, 0009245 lipid A biosynthetic process |
| >PRK10125 putative glycosyl transferase; Provisional | Back alignment and domain information |
|---|
Probab=98.34 E-value=6.8e-05 Score=85.55 Aligned_cols=95 Identities=16% Similarity=0.115 Sum_probs=64.2
Q ss_pred hhHHhh--CCCCcEEEEeCCCCCCCCCCeEECCCCCC---HHHHHhhcCEEEecC----ChhhHHHHHHcCCcEEEEeCC
Q 003222 238 KLKEEY--LPSGWKCLVCGASDSQLPPNFIKLPKDAY---TPDFMAASDCMLGKI----GYGTVSEALAYKLPFVFVRRD 308 (838)
Q Consensus 238 ~ll~~l--~~~~~~~vv~G~~~~~lp~nv~~~~~~~~---~pdlLa~adl~It~g----G~~Tv~Eal~~GvP~l~iP~~ 308 (838)
.+++++ +.+++.++++|...+..+.++..+++..+ ++++|+.+|+||.-+ -.+++.|||++|+|+|+.+..
T Consensus 260 ~li~A~~~l~~~~~L~ivG~g~~~~~~~v~~~g~~~~~~~l~~~y~~aDvfV~pS~~Egfp~vilEAmA~G~PVVat~~g 339 (405)
T PRK10125 260 QLVREMMALGDKIELHTFGKFSPFTAGNVVNHGFETDKRKLMSALNQMDALVFSSRVDNYPLILCEALSIGVPVIATHSD 339 (405)
T ss_pred HHHHHHHhCCCCeEEEEEcCCCcccccceEEecCcCCHHHHHHHHHhCCEEEECCccccCcCHHHHHHHcCCCEEEeCCC
Confidence 344443 23567788888754444567887777643 457889999999632 335899999999999999854
Q ss_pred CCCChHHHHHHHHHcCcEEEEecCCCChhhHHH
Q 003222 309 YFNEEPFLRNMLEFYQGGVEMIRRDLLTGHWKP 341 (838)
Q Consensus 309 ~~~EQ~~Na~~l~~~G~g~~l~~~~~~~~~l~~ 341 (838)
+. .+.+ ..+.|..++..|. +.+..
T Consensus 340 G~------~Eiv-~~~~G~lv~~~d~--~~La~ 363 (405)
T PRK10125 340 AA------REVL-QKSGGKTVSEEEV--LQLAQ 363 (405)
T ss_pred Ch------HHhE-eCCcEEEECCCCH--HHHHh
Confidence 32 2223 3457988987764 45554
|
|
| >PRK04181 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional | Back alignment and domain information |
|---|
Probab=98.34 E-value=6.3e-06 Score=87.48 Aligned_cols=118 Identities=17% Similarity=0.161 Sum_probs=77.9
Q ss_pred hHHHHHHHHHHHHH-hCCCCC---CCEEEEEEeCCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhhhc
Q 003222 610 AAYVAGTILVLMTE-LGVRFE---DSISMLVSSAVPEGKGVSSSASVEVASMSAIAAAHGLNIHPRDLALLCQKVENHIV 685 (838)
Q Consensus 610 ~~y~~g~i~~~~~~-~g~~~~---~g~~i~i~s~iP~g~GLgSSAA~~va~~~al~~l~~~~l~~~ela~~a~~~E~~~~ 685 (838)
.|.+.-++..+.+. .+.... .|+++.+..+||.|+|||||||-.+|+..+++++++.++++.++.++|.+.
T Consensus 61 ~NLv~kA~~~l~~~~~~~~~~~~~~gv~I~i~K~IP~gaGLGggSSdAAA~L~aln~l~~~~ls~~eL~~lA~~l----- 135 (257)
T PRK04181 61 ENIIYKAYQELKNKGFSNELIEFFKKKAIEVEKNIPTGAGLGGGSSDAATFLLMLNEILNLKLSLEELAEIGSKV----- 135 (257)
T ss_pred CcHHHHHHHHHHHhccccccccCCCceEEEEEeCCCCcCcccccHHHHHHHHHHHHHHhCCCcCHHHHHHHHHHh-----
Confidence 35554445555432 332121 489999999999999999999999999999999999999999999998742
Q ss_pred CCCCChhhHHHhhcC-CCCeEEEEEecCCceeeeeccCCCeEEEEEeCCCCCcCCCCch
Q 003222 686 GAPCGVMDQMASACG-EANKLLAMVCQPAELLGVVEIPSHIRFWGIDSGIRHSVGGADY 743 (838)
Q Consensus 686 G~~~G~mDq~a~~~G-~~~~~l~~d~~~~~~~~~v~~~~~~~~vi~~s~~~~~~~~~~y 743 (838)
| .|---+++| +. ++. ..-.+..++++.+.. .++|++.++.=++ ..-|
T Consensus 136 ----G-aDvPffl~~~~~--a~~--~G~Ge~l~~l~~~~~-~~~lv~P~~~vsT-~~vy 183 (257)
T PRK04181 136 ----G-ADVAFFISGYKS--ANV--SGIGEIVEEFEEEIL-NLEIFTPNIFCST-KAVY 183 (257)
T ss_pred ----C-CCccEEecCCce--EEE--EeeCCeeEECCCCCC-eEEEECCCCCcCH-HHHH
Confidence 2 355556666 42 222 223444455542222 2677776554433 2345
|
|
| >cd01635 Glycosyltransferase_GTB_type Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds | Back alignment and domain information |
|---|
Probab=98.33 E-value=1.5e-05 Score=81.62 Aligned_cols=52 Identities=23% Similarity=0.039 Sum_probs=38.5
Q ss_pred CCCeEECCCC---CCHHHHHhhcCEEEecCC----hhhHHHHHHcCCcEEEEeCCCCCC
Q 003222 261 PPNFIKLPKD---AYTPDFMAASDCMLGKIG----YGTVSEALAYKLPFVFVRRDYFNE 312 (838)
Q Consensus 261 p~nv~~~~~~---~~~pdlLa~adl~It~gG----~~Tv~Eal~~GvP~l~iP~~~~~E 312 (838)
..||.+.++. +.++.+++.||++|+... .++++||+++|+|+|+.+.+...|
T Consensus 160 ~~~v~~~~~~~~~~~~~~~~~~~di~l~~~~~e~~~~~~~Eam~~g~pvi~s~~~~~~e 218 (229)
T cd01635 160 LDRVIFLGGLDPEELLALLLAAADVFVLPSLREGFGLVVLEAMACGLPVIATDVGGPPE 218 (229)
T ss_pred cccEEEeCCCCcHHHHHHHhhcCCEEEecccccCcChHHHHHHhCCCCEEEcCCCCcce
Confidence 3566666653 233456667999998775 579999999999999988665554
|
The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. The structures of the formed glycoconjugates are extremely diverse, reflecting a wide range of biological functions. The members of this family share a common GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility. |
| >COG0763 LpxB Lipid A disaccharide synthetase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=98.33 E-value=4.8e-05 Score=83.16 Aligned_cols=296 Identities=21% Similarity=0.204 Sum_probs=163.3
Q ss_pred EEEEEeecCCCcccHHHHHHHHHHHHHCCCeEEEEeCCCCcccccccCCCceeeeeeccCCCcccccccc-cChHHHHHH
Q 003222 16 LVFAYYVTGHGFGHATRVVEVVRNLISAGHDVHVVTGAPDFVFTSEIQSPRLFIRKVLLDCGAVQADALT-VDRLASLEK 94 (838)
Q Consensus 16 ~~Il~~v~g~G~GHv~r~laLA~~L~~~Gh~V~~v~~~~~~~~~~~i~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~l~~ 94 (838)
++|+ .+.|.-.|-+- ...|.++|+++-.+|.|++-..+.+.....+ . .++.. .++ +.....+.+
T Consensus 2 ~ki~-i~AGE~SGDll-Ga~LikaLk~~~~~~efvGvgG~~m~aeG~~-------s-l~~~~-----elsvmGf~EVL~~ 66 (381)
T COG0763 2 LKIA-LSAGEASGDLL-GAGLIKALKARYPDVEFVGVGGEKMEAEGLE-------S-LFDME-----ELSVMGFVEVLGR 66 (381)
T ss_pred ceEE-EEecccchhhH-HHHHHHHHHhhCCCeEEEEeccHHHHhccCc-------c-ccCHH-----HHHHhhHHHHHHH
Confidence 3453 35666666443 4467888988855888876543222211111 0 01110 011 112223333
Q ss_pred HHHHhhccHHHHHHHHHHHHhcCCCcEEE-ECCCchHHHHHHH---hC--CcEEEE-ecCchhHHHHhhhhhcccchHHH
Q 003222 95 YSETAVAPRKSILKDEVEWLNSIKADLVV-SDVVPVACRAAAD---AG--IRSVCV-TNFSWDFIYAEYVMAAGHHHRSI 167 (838)
Q Consensus 95 ~~~~~~~~~~~~l~~~~~~L~~~kPDlVV-sD~~~~~~~aA~~---lg--IP~V~i-s~~~~~~i~~~~~~~~~~~~~~i 167 (838)
+.... ...++..+.+...+||++| .|.+-.....++. .+ +|.|-+ +.-.|. |+...
T Consensus 67 lp~ll-----k~~~~~~~~i~~~kpD~~i~IDsPdFnl~vak~lrk~~p~i~iihYV~PsVWA--Wr~~R---------- 129 (381)
T COG0763 67 LPRLL-----KIRRELVRYILANKPDVLILIDSPDFNLRVAKKLRKAGPKIKIIHYVSPSVWA--WRPKR---------- 129 (381)
T ss_pred HHHHH-----HHHHHHHHHHHhcCCCEEEEeCCCCCchHHHHHHHHhCCCCCeEEEECcceee--echhh----------
Confidence 33322 2345567778899999998 6876566655543 45 888765 333332 01100
Q ss_pred HHHHHhhccccceEEe-cCCCCCC-CCC-CceeecC--cccc-cCCcChHHHHHHhCCCCCCcEEEEEcCCCCchh----
Q 003222 168 VWQIAEDYSHCEFLIR-LPGYCPM-PAF-RDVIDVP--LVVR-RLHKSRKEVRKELGIEDDVKLLILNFGGQPAGW---- 237 (838)
Q Consensus 168 ~~~l~~~y~~~d~ll~-~~~~~~~-p~~-~~v~~ip--~~~~-~~~~~~~~~r~~l~~~~~~~~Vlvs~Gs~~~~~---- 237 (838)
...+. ..+|.++. +|+.... ..+ ..++++| .... +...+++.+|+.++++.+.+++.+.-||.....
T Consensus 130 a~~i~---~~~D~lLailPFE~~~y~k~g~~~~yVGHpl~d~i~~~~~r~~ar~~l~~~~~~~~lalLPGSR~sEI~rl~ 206 (381)
T COG0763 130 AVKIA---KYVDHLLAILPFEPAFYDKFGLPCTYVGHPLADEIPLLPDREAAREKLGIDADEKTLALLPGSRRSEIRRLL 206 (381)
T ss_pred HHHHH---HHhhHeeeecCCCHHHHHhcCCCeEEeCChhhhhccccccHHHHHHHhCCCCCCCeEEEecCCcHHHHHHHH
Confidence 00111 11233332 3332100 000 1133343 3322 245678889999999999999999999987631
Q ss_pred h-hHH---hhC--CCCcEEEEeCCCCC-C------C-----CCCeEECCCCCCHHHHHhhcCEEEecCChhhHHHHHHcC
Q 003222 238 K-LKE---EYL--PSGWKCLVCGASDS-Q------L-----PPNFIKLPKDAYTPDFMAASDCMLGKIGYGTVSEALAYK 299 (838)
Q Consensus 238 ~-ll~---~l~--~~~~~~vv~G~~~~-~------l-----p~nv~~~~~~~~~pdlLa~adl~It~gG~~Tv~Eal~~G 299 (838)
. +.+ .+. .++.++++.-.+.. . + ..++.+.+. .-.+.|++||+.+..+| +.+.|++.+|
T Consensus 207 ~~f~~a~~~l~~~~~~~~~vlp~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~a~~~aD~al~aSG-T~tLE~aL~g 283 (381)
T COG0763 207 PPFVQAAQELKARYPDLKFVLPLVNAKYRRIIEEALKWEVAGLSLILIDG--EKRKAFAAADAALAASG-TATLEAALAG 283 (381)
T ss_pred HHHHHHHHHHHhhCCCceEEEecCcHHHHHHHHHHhhccccCceEEecCc--hHHHHHHHhhHHHHhcc-HHHHHHHHhC
Confidence 1 111 222 25667776543331 0 1 123334332 22489999999999999 7889999999
Q ss_pred CcEEEEeCCCCCChHHHHHHHHHcCcEEE------------EecCCCChhhHHHHHHHHhhCC
Q 003222 300 LPFVFVRRDYFNEEPFLRNMLEFYQGGVE------------MIRRDLLTGHWKPYLERAISLK 350 (838)
Q Consensus 300 vP~l~iP~~~~~EQ~~Na~~l~~~G~g~~------------l~~~~~~~~~l~~~l~~ll~~~ 350 (838)
+|||+.-....-+ ...++++.+..+.-. +-.++.+++.+..++..++.+.
T Consensus 284 ~P~Vv~Yk~~~it-~~iak~lvk~~yisLpNIi~~~~ivPEliq~~~~pe~la~~l~~ll~~~ 345 (381)
T COG0763 284 TPMVVAYKVKPIT-YFIAKRLVKLPYVSLPNILAGREIVPELIQEDCTPENLARALEELLLNG 345 (381)
T ss_pred CCEEEEEeccHHH-HHHHHHhccCCcccchHHhcCCccchHHHhhhcCHHHHHHHHHHHhcCh
Confidence 9999987543322 356677766655321 1124566888889998888776
|
|
| >TIGR02149 glgA_Coryne glycogen synthase, Corynebacterium family | Back alignment and domain information |
|---|
Probab=98.31 E-value=9e-05 Score=83.52 Aligned_cols=135 Identities=13% Similarity=0.097 Sum_probs=84.1
Q ss_pred ChHHHHHHhCCCCCCcEEEEEcCCCCch---hhhHHhh--CCCCcEEEEeCCCCC--C-----------C---CCCeEEC
Q 003222 209 SRKEVRKELGIEDDVKLLILNFGGQPAG---WKLKEEY--LPSGWKCLVCGASDS--Q-----------L---PPNFIKL 267 (838)
Q Consensus 209 ~~~~~r~~l~~~~~~~~Vlvs~Gs~~~~---~~ll~~l--~~~~~~~vv~G~~~~--~-----------l---p~nv~~~ 267 (838)
.....++.++++++.+ ++++.|..... ..+++++ +.+++.++++|.... . + ..++..+
T Consensus 187 ~~~~~~~~~~~~~~~~-~i~~~Grl~~~Kg~~~li~a~~~l~~~~~l~i~g~g~~~~~~~~~~~~~~~~~~~~~~~v~~~ 265 (388)
T TIGR02149 187 DGNVVLDRYGIDRSRP-YILFVGRITRQKGVPHLLDAVHYIPKDVQVVLCAGAPDTPEVAEEVRQAVALLDRNRTGIIWI 265 (388)
T ss_pred chHHHHHHhCCCCCce-EEEEEcccccccCHHHHHHHHHHHhhcCcEEEEeCCCCcHHHHHHHHHHHHHhccccCceEEe
Confidence 3456677788764544 56677776642 2334432 234555555543221 0 1 1245544
Q ss_pred -CCC--CCHHHHHhhcCEEEecC----ChhhHHHHHHcCCcEEEEeCCCCCChHHHHHHHHHcCcEEEEecCCCCh----
Q 003222 268 -PKD--AYTPDFMAASDCMLGKI----GYGTVSEALAYKLPFVFVRRDYFNEEPFLRNMLEFYQGGVEMIRRDLLT---- 336 (838)
Q Consensus 268 -~~~--~~~pdlLa~adl~It~g----G~~Tv~Eal~~GvP~l~iP~~~~~EQ~~Na~~l~~~G~g~~l~~~~~~~---- 336 (838)
++. +.++++|++||++|.-+ ...++.||+++|+|+|+.+... +.+.++..+.|..++..+.+.
T Consensus 266 ~~~~~~~~~~~~~~~aDv~v~ps~~e~~g~~~lEA~a~G~PvI~s~~~~------~~e~i~~~~~G~~~~~~~~~~~~~~ 339 (388)
T TIGR02149 266 NKMLPKEELVELLSNAEVFVCPSIYEPLGIVNLEAMACGTPVVASATGG------IPEVVVDGETGFLVPPDNSDADGFQ 339 (388)
T ss_pred cCCCCHHHHHHHHHhCCEEEeCCccCCCChHHHHHHHcCCCEEEeCCCC------HHHHhhCCCceEEcCCCCCcccchH
Confidence 333 24678999999999642 2357899999999999987432 344566667798887665421
Q ss_pred hhHHHHHHHHhhCC
Q 003222 337 GHWKPYLERAISLK 350 (838)
Q Consensus 337 ~~l~~~l~~ll~~~ 350 (838)
+.+.++|.++++++
T Consensus 340 ~~l~~~i~~l~~~~ 353 (388)
T TIGR02149 340 AELAKAINILLADP 353 (388)
T ss_pred HHHHHHHHHHHhCH
Confidence 57888888887765
|
This model describes Corynebacterium glutamicum GlgA and closely related proteins in several other species. This enzyme is required for glycogen biosynthesis and appears to replace the distantly related TIGR02095 family of ADP-glucose type glycogen synthase in Corynebacterium glutamicum, Mycobacterium tuberculosis, Bifidobacterium longum, and Streptomyces coelicolor. |
| >cd03809 GT1_mtfB_like This family is most closely related to the GT1 family of glycosyltransferases | Back alignment and domain information |
|---|
Probab=98.30 E-value=3.3e-05 Score=85.26 Aligned_cols=117 Identities=15% Similarity=0.010 Sum_probs=77.6
Q ss_pred cEEEEEcCCCCch---hhhHHh---hCC--CCcEEEEeCCCCCC------------CCCCeEECCCC--CCHHHHHhhcC
Q 003222 224 KLLILNFGGQPAG---WKLKEE---YLP--SGWKCLVCGASDSQ------------LPPNFIKLPKD--AYTPDFMAASD 281 (838)
Q Consensus 224 ~~Vlvs~Gs~~~~---~~ll~~---l~~--~~~~~vv~G~~~~~------------lp~nv~~~~~~--~~~pdlLa~ad 281 (838)
+.++++.|+.... ..+++. +.. .++.++++|..... .+.||++.++. ..++++|+.||
T Consensus 195 ~~~i~~~G~~~~~K~~~~~l~~~~~~~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~~d 274 (365)
T cd03809 195 RPYFLYVGTIEPRKNLERLLEAFARLPAKGPDPKLVIVGKRGWLNEELLARLRELGLGDRVRFLGYVSDEELAALYRGAR 274 (365)
T ss_pred CCeEEEeCCCccccCHHHHHHHHHHHHHhcCCCCEEEecCCccccHHHHHHHHHcCCCCeEEECCCCChhHHHHHHhhhh
Confidence 3466777877642 223332 222 24677778865421 46789998887 35668999999
Q ss_pred EEEec----CChhhHHHHHHcCCcEEEEeCCCCCChHHHHHHHHHcCcEEEEecCCCChhhHHHHHHHHhhCC
Q 003222 282 CMLGK----IGYGTVSEALAYKLPFVFVRRDYFNEEPFLRNMLEFYQGGVEMIRRDLLTGHWKPYLERAISLK 350 (838)
Q Consensus 282 l~It~----gG~~Tv~Eal~~GvP~l~iP~~~~~EQ~~Na~~l~~~G~g~~l~~~~~~~~~l~~~l~~ll~~~ 350 (838)
++|.. +..+++.||+++|+|+|+.......|. +. ..|..+...+ .+.+.++|.++++++
T Consensus 275 ~~l~ps~~e~~~~~~~Ea~a~G~pvI~~~~~~~~e~------~~--~~~~~~~~~~--~~~~~~~i~~l~~~~ 337 (365)
T cd03809 275 AFVFPSLYEGFGLPVLEAMACGTPVIASNISSLPEV------AG--DAALYFDPLD--PEALAAAIERLLEDP 337 (365)
T ss_pred hhcccchhccCCCCHHHHhcCCCcEEecCCCCccce------ec--CceeeeCCCC--HHHHHHHHHHHhcCH
Confidence 99853 233589999999999999776555544 22 2455666554 468889999988765
|
mtfB (mannosyltransferase B) in E. coli has been shown to direct the growth of the O9-specific polysaccharide chain. It transfers two mannoses into the position 3 of the previously synthesized polysaccharide. |
| >cd04955 GT1_like_6 This family is most closely related to the GT1 family of glycosyltransferases | Back alignment and domain information |
|---|
Probab=98.30 E-value=0.00017 Score=80.02 Aligned_cols=125 Identities=21% Similarity=0.192 Sum_probs=78.0
Q ss_pred HHHHHhCCCCCCcEEEEEcCCCCch---hhhHHhh--CCCCcEEEEeCCCCC------------CCCCCeEECCCCCC--
Q 003222 212 EVRKELGIEDDVKLLILNFGGQPAG---WKLKEEY--LPSGWKCLVCGASDS------------QLPPNFIKLPKDAY-- 272 (838)
Q Consensus 212 ~~r~~l~~~~~~~~Vlvs~Gs~~~~---~~ll~~l--~~~~~~~vv~G~~~~------------~lp~nv~~~~~~~~-- 272 (838)
+.++.++..+ .+. +++.|..... ..+++++ +..++.++++|.... .+.++|++.+++..
T Consensus 183 ~~~~~~~~~~-~~~-i~~~G~~~~~Kg~~~li~a~~~l~~~~~l~ivG~~~~~~~~~~~~~~~~~~~~~V~~~g~~~~~~ 260 (363)
T cd04955 183 EILKKYGLEP-GRY-YLLVGRIVPENNIDDLIEAFSKSNSGKKLVIVGNADHNTPYGKLLKEKAAADPRIIFVGPIYDQE 260 (363)
T ss_pred hhHHhcCCCC-CcE-EEEEecccccCCHHHHHHHHHhhccCceEEEEcCCCCcchHHHHHHHHhCCCCcEEEccccChHH
Confidence 3445555543 333 4567876653 2233332 233677888886521 13578999888743
Q ss_pred HHHHHhhcCEEEecC----Ch-hhHHHHHHcCCcEEEEeCCCCCChHHHHHHHHHcCcEEEEecCCCChhhHHHHHHHHh
Q 003222 273 TPDFMAASDCMLGKI----GY-GTVSEALAYKLPFVFVRRDYFNEEPFLRNMLEFYQGGVEMIRRDLLTGHWKPYLERAI 347 (838)
Q Consensus 273 ~pdlLa~adl~It~g----G~-~Tv~Eal~~GvP~l~iP~~~~~EQ~~Na~~l~~~G~g~~l~~~~~~~~~l~~~l~~ll 347 (838)
+.+++..+|+++..+ |+ +++.|||++|+|+|+.......|. ++. .|..++..+ .+.++|.+++
T Consensus 261 ~~~~~~~ad~~v~ps~~~e~~~~~~~EAma~G~PvI~s~~~~~~e~------~~~--~g~~~~~~~----~l~~~i~~l~ 328 (363)
T cd04955 261 LLELLRYAALFYLHGHSVGGTNPSLLEAMAYGCPVLASDNPFNREV------LGD--KAIYFKVGD----DLASLLEELE 328 (363)
T ss_pred HHHHHHhCCEEEeCCccCCCCChHHHHHHHcCCCEEEecCCcccee------ecC--CeeEecCch----HHHHHHHHHH
Confidence 457888899998643 22 479999999999999876544443 222 344454333 1788888888
Q ss_pred hCC
Q 003222 348 SLK 350 (838)
Q Consensus 348 ~~~ 350 (838)
+++
T Consensus 329 ~~~ 331 (363)
T cd04955 329 ADP 331 (363)
T ss_pred hCH
Confidence 765
|
Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog |
| >PRK01021 lpxB lipid-A-disaccharide synthase; Reviewed | Back alignment and domain information |
|---|
Probab=98.27 E-value=0.0001 Score=85.70 Aligned_cols=226 Identities=15% Similarity=0.147 Sum_probs=123.5
Q ss_pred HHHHHHHHHhcCCCcEEE-ECCCchHHHHH---HHhCC--cEEEE-ecCchhHHHHhhhhhcccchHHHHHHHHhhcccc
Q 003222 106 ILKDEVEWLNSIKADLVV-SDVVPVACRAA---ADAGI--RSVCV-TNFSWDFIYAEYVMAAGHHHRSIVWQIAEDYSHC 178 (838)
Q Consensus 106 ~l~~~~~~L~~~kPDlVV-sD~~~~~~~aA---~~lgI--P~V~i-s~~~~~~i~~~~~~~~~~~~~~i~~~l~~~y~~~ 178 (838)
..++..+.+++.+||+|| .|++-....+| +..|+ |++.+ +.--|. ++... ...+ .+. .
T Consensus 298 ~~~~l~~~i~~~kPD~vIlID~PgFNlrLAK~lkk~Gi~ipviyYVsPqVWA--WR~~R------ikki----~k~---v 362 (608)
T PRK01021 298 RYRKLYKTILKTNPRTVICIDFPDFHFLLIKKLRKRGYKGKIVHYVCPSIWA--WRPKR------KTIL----EKY---L 362 (608)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCCCCHHHHHHHHhcCCCCCEEEEECcccee--eCcch------HHHH----HHH---h
Confidence 456667888999999999 58755555444 45675 98765 333332 01100 0111 111 1
Q ss_pred ceEE-ecCCCCC---CCCC-CceeecCccccc-CCcChHHHHHHhCCCCCCcEEEEEcCCCCch-hh----hHHh----h
Q 003222 179 EFLI-RLPGYCP---MPAF-RDVIDVPLVVRR-LHKSRKEVRKELGIEDDVKLLILNFGGQPAG-WK----LKEE----Y 243 (838)
Q Consensus 179 d~ll-~~~~~~~---~p~~-~~v~~ip~~~~~-~~~~~~~~r~~l~~~~~~~~Vlvs~Gs~~~~-~~----ll~~----l 243 (838)
|.++ -+|+..+ .... ...++-|..... ...++++.++.++++++.++|.+.-||.... .. ++++ .
T Consensus 363 D~ll~IfPFE~~~y~~~gv~v~yVGHPL~d~i~~~~~~~~~r~~lgl~~~~~iIaLLPGSR~~EI~rllPv~l~aa~~~~ 442 (608)
T PRK01021 363 DLLLLILPFEQNLFKDSPLRTVYLGHPLVETISSFSPNLSWKEQLHLPSDKPIVAAFPGSRRGDILRNLTIQVQAFLASS 442 (608)
T ss_pred hhheecCccCHHHHHhcCCCeEEECCcHHhhcccCCCHHHHHHHcCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHH
Confidence 1111 1232110 0000 122333443321 2445677889999987889999999998763 11 1221 2
Q ss_pred CCCCcEEEEeCCCCC--C-----C-C---CCeEECCCCCCHHHHHhhcCEEEecCChhhHHHHHHcCCcEEEEeCCCCCC
Q 003222 244 LPSGWKCLVCGASDS--Q-----L-P---PNFIKLPKDAYTPDFMAASDCMLGKIGYGTVSEALAYKLPFVFVRRDYFNE 312 (838)
Q Consensus 244 ~~~~~~~vv~G~~~~--~-----l-p---~nv~~~~~~~~~pdlLa~adl~It~gG~~Tv~Eal~~GvP~l~iP~~~~~E 312 (838)
+..+.++++...... + + . .++.++.- ..-.++|++||+.++.+| +.+.|++.+|+|||++-....-
T Consensus 443 l~~~l~fvvp~a~~~~~~~i~~~~~~~~~~~~~ii~~-~~~~~~m~aaD~aLaaSG-TaTLEaAL~g~PmVV~YK~s~L- 519 (608)
T PRK01021 443 LASTHQLLVSSANPKYDHLILEVLQQEGCLHSHIVPS-QFRYELMRECDCALAKCG-TIVLETALNQTPTIVTCQLRPF- 519 (608)
T ss_pred hccCeEEEEecCchhhHHHHHHHHhhcCCCCeEEecC-cchHHHHHhcCeeeecCC-HHHHHHHHhCCCEEEEEecCHH-
Confidence 223456665432221 1 1 1 12333311 113589999999999999 7899999999999998754322
Q ss_pred hHHHHHHHHHc------------CcE---EEEe-cCCCChhhHHHHHHHHhhCC
Q 003222 313 EPFLRNMLEFY------------QGG---VEMI-RRDLLTGHWKPYLERAISLK 350 (838)
Q Consensus 313 Q~~Na~~l~~~------------G~g---~~l~-~~~~~~~~l~~~l~~ll~~~ 350 (838)
-...++++.+. |-. ..+. .++.+++++.+.+ +++.++
T Consensus 520 ty~Iak~Lvki~i~yIsLpNIIagr~VvPEllqgQ~~~tpe~La~~l-~lL~d~ 572 (608)
T PRK01021 520 DTFLAKYIFKIILPAYSLPNIILGSTIFPEFIGGKKDFQPEEVAAAL-DILKTS 572 (608)
T ss_pred HHHHHHHHHhccCCeeehhHHhcCCCcchhhcCCcccCCHHHHHHHH-HHhcCH
Confidence 13466777661 111 1121 3456677787775 666554
|
|
| >KOG4644 consensus L-fucose kinase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.24 E-value=1.2e-05 Score=88.36 Aligned_cols=103 Identities=21% Similarity=0.281 Sum_probs=75.0
Q ss_pred CCEEEEEEeCCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHH----HHHHHHHHhhhcCCCCChhhHHHhhcCCCCeE
Q 003222 630 DSISMLVSSAVPEGKGVSSSASVEVASMSAIAAAHGLNIHPRDL----ALLCQKVENHIVGAPCGVMDQMASACGEANKL 705 (838)
Q Consensus 630 ~g~~i~i~s~iP~g~GLgSSAA~~va~~~al~~l~~~~l~~~el----a~~a~~~E~~~~G~~~G~mDq~a~~~G~~~~~ 705 (838)
.||++..+|++|.|+|||.|+-+.....+|+....|.....+.+ .....+.|. +.-.-.|++||....|-|..+-
T Consensus 690 ~GfeihT~SdLPHGSGLGTSSIlA~TaLaAi~~aagr~~gTeaLiHailHtvlrlEQ-ilTTGGGWQDQ~G~im~GIK~g 768 (948)
T KOG4644|consen 690 CGFEIHTSSDLPHGSGLGTSSILACTALAAICAAAGRADGTEALIHAILHTVLRLEQ-ILTTGGGWQDQCGAIMEGIKKG 768 (948)
T ss_pred CceEeeccccCCCCCCcchHHHHHHHHHHHHHHhhccccchhHhHHHHHHHHHHHHH-HhhcCCchhhhccchhhhhhhc
Confidence 69999999999999999999998888888999988875554433 334445774 4567889999998888774321
Q ss_pred EEEEec---CCce-eeeeccCC------CeEEEEEeCCCCC
Q 003222 706 LAMVCQ---PAEL-LGVVEIPS------HIRFWGIDSGIRH 736 (838)
Q Consensus 706 l~~d~~---~~~~-~~~v~~~~------~~~~vi~~s~~~~ 736 (838)
.|+ +..+ .+.+.+|+ +-++++++||+.|
T Consensus 769 ---r~rael~~~ie~eeiTipe~f~ekL~dhLLLVYTGKTR 806 (948)
T KOG4644|consen 769 ---RCRAELNHGIEHEEITIPEEFREKLEDHLLLVYTGKTR 806 (948)
T ss_pred ---cchhhccCCceeeeecCCHHHHHHHhhcEEEEEeCchH
Confidence 232 2222 24666663 4568999999987
|
|
| >TIGR03087 stp1 sugar transferase, PEP-CTERM/EpsH1 system associated | Back alignment and domain information |
|---|
Probab=98.22 E-value=5.3e-05 Score=86.13 Aligned_cols=95 Identities=15% Similarity=0.128 Sum_probs=69.6
Q ss_pred CCcEEEEeCCCCCC------CCCCeEECCCCCCHHHHHhhcCEEEe--c--CCh-hhHHHHHHcCCcEEEEeCCCCCChH
Q 003222 246 SGWKCLVCGASDSQ------LPPNFIKLPKDAYTPDFMAASDCMLG--K--IGY-GTVSEALAYKLPFVFVRRDYFNEEP 314 (838)
Q Consensus 246 ~~~~~vv~G~~~~~------lp~nv~~~~~~~~~pdlLa~adl~It--~--gG~-~Tv~Eal~~GvP~l~iP~~~~~EQ~ 314 (838)
+++.++++|..... ..+||++.|++++++.+|+.||++|. . .|. +.+.|||++|+|+|+.+.. .+.
T Consensus 258 p~~~l~ivG~g~~~~~~~l~~~~~V~~~G~v~~~~~~~~~adv~v~Ps~~~eG~~~~~lEAma~G~PVV~t~~~--~~~- 334 (397)
T TIGR03087 258 PAAEFYIVGAKPSPAVRALAALPGVTVTGSVADVRPYLAHAAVAVAPLRIARGIQNKVLEAMAMAKPVVASPEA--AEG- 334 (397)
T ss_pred CCcEEEEECCCChHHHHHhccCCCeEEeeecCCHHHHHHhCCEEEecccccCCcccHHHHHHHcCCCEEecCcc--ccc-
Confidence 57788888876432 35689999999889999999999994 2 343 3699999999999998732 221
Q ss_pred HHHHHHHHcCcEEEEecCCCChhhHHHHHHHHhhCC
Q 003222 315 FLRNMLEFYQGGVEMIRRDLLTGHWKPYLERAISLK 350 (838)
Q Consensus 315 ~Na~~l~~~G~g~~l~~~~~~~~~l~~~l~~ll~~~ 350 (838)
..+..|.|+.+. . +++.+.++|.++++++
T Consensus 335 ----i~~~~~~g~lv~-~--~~~~la~ai~~ll~~~ 363 (397)
T TIGR03087 335 ----IDALPGAELLVA-A--DPADFAAAILALLANP 363 (397)
T ss_pred ----ccccCCcceEeC-C--CHHHHHHHHHHHHcCH
Confidence 112346677664 3 3678999999998765
|
Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate. |
| >PRK14099 glycogen synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.19 E-value=0.00037 Score=81.40 Aligned_cols=134 Identities=19% Similarity=0.180 Sum_probs=81.4
Q ss_pred HHHHHHhCCCCC-CcEEEEEcCCCCch--hh-hHH---hhCCCCcEEEEeCCCCCC-----------CCCCe-EECCCCC
Q 003222 211 KEVRKELGIEDD-VKLLILNFGGQPAG--WK-LKE---EYLPSGWKCLVCGASDSQ-----------LPPNF-IKLPKDA 271 (838)
Q Consensus 211 ~~~r~~l~~~~~-~~~Vlvs~Gs~~~~--~~-ll~---~l~~~~~~~vv~G~~~~~-----------lp~nv-~~~~~~~ 271 (838)
+.+++.++++.+ ...++.+.|..... .+ +++ .+...+..+++.|...+. .+.++ .+++|.+
T Consensus 281 ~~l~~~~gl~~~~~~~li~~VgRL~~~KG~d~Li~A~~~l~~~~~~lvivG~G~~~~~~~l~~l~~~~~~~v~~~~G~~~ 360 (485)
T PRK14099 281 AALQARFGLDPDPDALLLGVISRLSWQKGLDLLLEALPTLLGEGAQLALLGSGDAELEARFRAAAQAYPGQIGVVIGYDE 360 (485)
T ss_pred HHHHHHcCCCcccCCcEEEEEecCCccccHHHHHHHHHHHHhcCcEEEEEecCCHHHHHHHHHHHHHCCCCEEEEeCCCH
Confidence 467788888643 23455566766542 22 233 233346788888865421 35566 5778877
Q ss_pred CHHHHH-hhcCEEEecC---C-hhhHHHHHHcCCcEEEEeCCCCCChHHHHH-HHHH--cCcEEEEecCCCChhhHHHHH
Q 003222 272 YTPDFM-AASDCMLGKI---G-YGTVSEALAYKLPFVFVRRDYFNEEPFLRN-MLEF--YQGGVEMIRRDLLTGHWKPYL 343 (838)
Q Consensus 272 ~~pdlL-a~adl~It~g---G-~~Tv~Eal~~GvP~l~iP~~~~~EQ~~Na~-~l~~--~G~g~~l~~~~~~~~~l~~~l 343 (838)
.++.+| +.||+||.-+ | ..+.+|||++|+|.|+....+..|.-.... ..+. .+.|..++..+ ++.+.++|
T Consensus 361 ~l~~~~~a~aDifv~PS~~E~fGl~~lEAma~G~ppVvs~~GGl~d~V~~~~~~~~~~~~~~G~l~~~~d--~~~La~ai 438 (485)
T PRK14099 361 ALAHLIQAGADALLVPSRFEPCGLTQLCALRYGAVPVVARVGGLADTVVDANEMAIATGVATGVQFSPVT--ADALAAAL 438 (485)
T ss_pred HHHHHHHhcCCEEEECCccCCCcHHHHHHHHCCCCcEEeCCCCccceeecccccccccCCCceEEeCCCC--HHHHHHHH
Confidence 778776 5799999632 2 258899999998777765434334211110 0011 15688887765 46888888
Q ss_pred HHH
Q 003222 344 ERA 346 (838)
Q Consensus 344 ~~l 346 (838)
.++
T Consensus 439 ~~a 441 (485)
T PRK14099 439 RKT 441 (485)
T ss_pred HHH
Confidence 873
|
|
| >TIGR02470 sucr_synth sucrose synthase | Back alignment and domain information |
|---|
Probab=98.19 E-value=0.0013 Score=79.50 Aligned_cols=126 Identities=13% Similarity=0.030 Sum_probs=78.6
Q ss_pred HHHHhCC--CCCCcEEEEEcCCCCch---hhhHHhh-----CCCCcEEEEeCCCCC-----------------------C
Q 003222 213 VRKELGI--EDDVKLLILNFGGQPAG---WKLKEEY-----LPSGWKCLVCGASDS-----------------------Q 259 (838)
Q Consensus 213 ~r~~l~~--~~~~~~Vlvs~Gs~~~~---~~ll~~l-----~~~~~~~vv~G~~~~-----------------------~ 259 (838)
.++.+|+ +++++ ++++.|..... ..+++++ +..+..++++|.... .
T Consensus 538 ~~~~~G~l~d~~kp-iIl~VGRL~~~KGid~LIeA~~~l~~l~~~~~LVIVGGg~~~~~s~d~ee~~~i~~L~~la~~~g 616 (784)
T TIGR02470 538 NDEHYGYLKDPNKP-IIFSMARLDRVKNLTGLVECYGRSPKLRELVNLVVVAGKLDAKESKDREEQAEIEKMHNLIDQYQ 616 (784)
T ss_pred HHHHhCCCCCCCCc-EEEEEeCCCccCCHHHHHHHHHHhHhhCCCeEEEEEeCCcccccccchhHHHHHHHHHHHHHHhC
Confidence 3456664 34555 56777877653 2334432 223456666654210 0
Q ss_pred CCCCeEECCCC---CCHHHHHh----hcCEEEecC----ChhhHHHHHHcCCcEEEEeCCCCCChHHHHHHHHHcCcEEE
Q 003222 260 LPPNFIKLPKD---AYTPDFMA----ASDCMLGKI----GYGTVSEALAYKLPFVFVRRDYFNEEPFLRNMLEFYQGGVE 328 (838)
Q Consensus 260 lp~nv~~~~~~---~~~pdlLa----~adl~It~g----G~~Tv~Eal~~GvP~l~iP~~~~~EQ~~Na~~l~~~G~g~~ 328 (838)
+.++|.++++. ..++++++ .+|+||.-+ -..|+.|||+||+|+|+....+ ..+.++....|..
T Consensus 617 L~g~V~flG~~~~~~~~~elyr~iAd~adVfV~PS~~EpFGLvvLEAMAcGlPVVAT~~GG------~~EiV~dg~tGfL 690 (784)
T TIGR02470 617 LHGQIRWIGAQLNRVRNGELYRYIADTKGIFVQPALYEAFGLTVLEAMTCGLPTFATRFGG------PLEIIQDGVSGFH 690 (784)
T ss_pred CCCeEEEccCcCCcccHHHHHHHhhccCcEEEECCcccCCCHHHHHHHHcCCCEEEcCCCC------HHHHhcCCCcEEE
Confidence 35678888764 23455654 257999643 2369999999999999986433 3445666667988
Q ss_pred EecCCCChhhHHHHHHHHh
Q 003222 329 MIRRDLLTGHWKPYLERAI 347 (838)
Q Consensus 329 l~~~~~~~~~l~~~l~~ll 347 (838)
++..+ ++.+.++|.+++
T Consensus 691 Vdp~D--~eaLA~aL~~ll 707 (784)
T TIGR02470 691 IDPYH--GEEAAEKIVDFF 707 (784)
T ss_pred eCCCC--HHHHHHHHHHHH
Confidence 98766 467888888776
|
This model represents sucrose synthase, an enzyme that, despite its name, generally uses rather produces sucrose. Sucrose plus UDP (or ADP) becomes D-fructose plus UDP-glucose (or ADP-glucose), which is then available for cell wall (or starch) biosynthesis. The enzyme is homologous to sucrose phosphate synthase, which catalyzes the penultimate step in sucrose synthesis. Sucrose synthase is found, so far, exclusively in plants and cyanobacteria. |
| >TIGR03568 NeuC_NnaA UDP-N-acetyl-D-glucosamine 2-epimerase, UDP-hydrolysing | Back alignment and domain information |
|---|
Probab=98.16 E-value=0.00069 Score=76.19 Aligned_cols=216 Identities=15% Similarity=0.109 Sum_probs=112.3
Q ss_pred HHHHHHHHHhcCCCcEEEECC----CchHHHHHHHhCCcEEEEec--Cchh---HHHHhhhhhcccchHHHHHHHHh-hc
Q 003222 106 ILKDEVEWLNSIKADLVVSDV----VPVACRAAADAGIRSVCVTN--FSWD---FIYAEYVMAAGHHHRSIVWQIAE-DY 175 (838)
Q Consensus 106 ~l~~~~~~L~~~kPDlVVsD~----~~~~~~aA~~lgIP~V~is~--~~~~---~i~~~~~~~~~~~~~~i~~~l~~-~y 175 (838)
.+....+++++.+||+|++.. ...+.++|..++||++.+.. .++. ...+. +..++.. .+
T Consensus 81 ~~~~~~~~~~~~~Pd~vlv~GD~~~~la~alaA~~~~IPv~HveaG~rs~~~~eE~~r~-----------~i~~la~l~f 149 (365)
T TIGR03568 81 TIIGFSDAFERLKPDLVVVLGDRFEMLAAAIAAALLNIPIAHIHGGEVTEGAIDESIRH-----------AITKLSHLHF 149 (365)
T ss_pred HHHHHHHHHHHhCCCEEEEeCCchHHHHHHHHHHHhCCcEEEEECCccCCCCchHHHHH-----------HHHHHHhhcc
Confidence 344557788999999999654 33678899999999997622 2221 11111 1111110 00
Q ss_pred ccc----ceEEecCCCCCCCCCCceeecCcccc---cCCcChHHHHHHhCCCCCCcEEEEEcCCCC--c---h---hhhH
Q 003222 176 SHC----EFLIRLPGYCPMPAFRDVIDVPLVVR---RLHKSRKEVRKELGIEDDVKLLILNFGGQP--A---G---WKLK 240 (838)
Q Consensus 176 ~~~----d~ll~~~~~~~~p~~~~v~~ip~~~~---~~~~~~~~~r~~l~~~~~~~~Vlvs~Gs~~--~---~---~~ll 240 (838)
... +.++.. ..+ +....+++.+.+.. .....++++.+.++++.++++|++.+-... . . ..++
T Consensus 150 ~~t~~~~~~L~~e--g~~-~~~i~~tG~~~iD~l~~~~~~~~~~~~~~lgl~~~~~~vlvt~Hp~~~~~~~~~~~l~~li 226 (365)
T TIGR03568 150 VATEEYRQRVIQM--GED-PDRVFNVGSPGLDNILSLDLLSKEELEEKLGIDLDKPYALVTFHPVTLEKESAEEQIKELL 226 (365)
T ss_pred CCCHHHHHHHHHc--CCC-CCcEEEECCcHHHHHHhhhccCHHHHHHHhCCCCCCCEEEEEeCCCcccccCchHHHHHHH
Confidence 000 001100 000 11111233333221 112235677788888655678777774322 1 1 1233
Q ss_pred HhhCC--CCcEEEEeC--CCCCC--------C--CCCeEECCCCCC--HHHHHhhcCEEEecCChhhHHHHHHcCCcEEE
Q 003222 241 EEYLP--SGWKCLVCG--ASDSQ--------L--PPNFIKLPKDAY--TPDFMAASDCMLGKIGYGTVSEALAYKLPFVF 304 (838)
Q Consensus 241 ~~l~~--~~~~~vv~G--~~~~~--------l--p~nv~~~~~~~~--~pdlLa~adl~It~gG~~Tv~Eal~~GvP~l~ 304 (838)
+++.. ..+.++... +.... . .+|+.+.+..++ +..+|+.|+++||-++. ++.||.++|+|+|.
T Consensus 227 ~~L~~~~~~~~vi~P~~~p~~~~i~~~i~~~~~~~~~v~l~~~l~~~~~l~Ll~~a~~vitdSSg-gi~EA~~lg~Pvv~ 305 (365)
T TIGR03568 227 KALDELNKNYIFTYPNADAGSRIINEAIEEYVNEHPNFRLFKSLGQERYLSLLKNADAVIGNSSS-GIIEAPSFGVPTIN 305 (365)
T ss_pred HHHHHhccCCEEEEeCCCCCchHHHHHHHHHhcCCCCEEEECCCChHHHHHHHHhCCEEEEcChh-HHHhhhhcCCCEEe
Confidence 33322 234333322 11110 1 467887765443 33788899999998853 44999999999998
Q ss_pred EeCCCCCChHHHHHHHHHcCcEEE-EecCCCChhhHHHHHHHHhh
Q 003222 305 VRRDYFNEEPFLRNMLEFYQGGVE-MIRRDLLTGHWKPYLERAIS 348 (838)
Q Consensus 305 iP~~~~~EQ~~Na~~l~~~G~g~~-l~~~~~~~~~l~~~l~~ll~ 348 (838)
+. ..+| ..+.|..+. +. ..++.+.+++.++++
T Consensus 306 l~--~R~e-------~~~~g~nvl~vg---~~~~~I~~a~~~~~~ 338 (365)
T TIGR03568 306 IG--TRQK-------GRLRADSVIDVD---PDKEEIVKAIEKLLD 338 (365)
T ss_pred ec--CCch-------hhhhcCeEEEeC---CCHHHHHHHHHHHhC
Confidence 85 2221 223444433 42 235677888888543
|
This family of enzymes catalyzes the combined epimerization and UDP-hydrolysis of UDP-N-acetylglucosamine to N-acetylmannosamine. This is in contrast to the related enzyme WecB (TIGR00236) which retains the UDP moiety. NeuC acts in concert with NeuA and NeuB to synthesize CMP-N5-acetyl-neuraminate. |
| >cd03791 GT1_Glycogen_synthase_DULL1_like This family is most closely related to the GT1 family of glycosyltransferases | Back alignment and domain information |
|---|
Probab=98.13 E-value=0.00014 Score=84.81 Aligned_cols=138 Identities=20% Similarity=0.132 Sum_probs=84.9
Q ss_pred hHHHHHHhCCC-CCCcEEEEEcCCCCch--hh-hHH---hhCCCCcEEEEeCCCCCC-----------CCCCeEEC-CCC
Q 003222 210 RKEVRKELGIE-DDVKLLILNFGGQPAG--WK-LKE---EYLPSGWKCLVCGASDSQ-----------LPPNFIKL-PKD 270 (838)
Q Consensus 210 ~~~~r~~l~~~-~~~~~Vlvs~Gs~~~~--~~-ll~---~l~~~~~~~vv~G~~~~~-----------lp~nv~~~-~~~ 270 (838)
++.+++.++++ .+...++++.|..... .. +++ .+...++.+++.|...+. .+.|+.++ ++.
T Consensus 281 k~~l~~~~g~~~~~~~~~i~~vGrl~~~Kg~~~li~a~~~l~~~~~~lvi~G~g~~~~~~~~~~~~~~~~~~v~~~~~~~ 360 (476)
T cd03791 281 KAALQEELGLPVDPDAPLFGFVGRLTEQKGIDLLLEALPELLELGGQLVILGSGDPEYEEALRELAARYPGRVAVLIGYD 360 (476)
T ss_pred HHHHHHHcCCCcCCCCCEEEEEeeccccccHHHHHHHHHHHHHcCcEEEEEecCCHHHHHHHHHHHHhCCCcEEEEEeCC
Confidence 34577888874 2333466777777652 22 222 233345778888865421 35777643 444
Q ss_pred CC-HHHHHhhcCEEEecC----ChhhHHHHHHcCCcEEEEeCCCCCChHHHHHHHHHcCcEEEEecCCCChhhHHHHHHH
Q 003222 271 AY-TPDFMAASDCMLGKI----GYGTVSEALAYKLPFVFVRRDYFNEEPFLRNMLEFYQGGVEMIRRDLLTGHWKPYLER 345 (838)
Q Consensus 271 ~~-~pdlLa~adl~It~g----G~~Tv~Eal~~GvP~l~iP~~~~~EQ~~Na~~l~~~G~g~~l~~~~~~~~~l~~~l~~ 345 (838)
.. ++.+++.||+++..+ -..+.+||+++|+|+|+....+..|.-.+...-.+.|.|..++..+ ++.+..+|.+
T Consensus 361 ~~~~~~~~~~aDv~l~pS~~E~~gl~~lEAma~G~pvI~~~~gg~~e~v~~~~~~~~~~~G~~~~~~~--~~~l~~~i~~ 438 (476)
T cd03791 361 EALAHLIYAGADFFLMPSRFEPCGLTQMYAMRYGTVPIVRATGGLADTVIDYNEDTGEGTGFVFEGYN--ADALLAALRR 438 (476)
T ss_pred HHHHHHHHHhCCEEECCCCCCCCcHHHHHHhhCCCCCEECcCCCccceEeCCcCCCCCCCeEEeCCCC--HHHHHHHHHH
Confidence 33 347889999999532 2257899999999999877555544311111011244788887665 4688888888
Q ss_pred HhhC
Q 003222 346 AISL 349 (838)
Q Consensus 346 ll~~ 349 (838)
+++.
T Consensus 439 ~l~~ 442 (476)
T cd03791 439 ALAL 442 (476)
T ss_pred HHHH
Confidence 8753
|
Glycogen synthase catalyzes the formation and elongation of the alpha-1,4-glucose backbone using ADP-glucose, the second and key step of glycogen biosynthesis. This family includes starch synthases of plants, such as DULL1 in Zea mays and glycogen synthases of various organisms. |
| >cd03804 GT1_wbaZ_like This family is most closely related to the GT1 family of glycosyltransferases | Back alignment and domain information |
|---|
Probab=98.10 E-value=5.6e-05 Score=84.10 Aligned_cols=117 Identities=17% Similarity=0.063 Sum_probs=82.2
Q ss_pred EEEEcCCCCch---hhhHHhhCCCCcEEEEeCCCCCC------CCCCeEECCCCCC--HHHHHhhcCEEEec--CCh-hh
Q 003222 226 LILNFGGQPAG---WKLKEEYLPSGWKCLVCGASDSQ------LPPNFIKLPKDAY--TPDFMAASDCMLGK--IGY-GT 291 (838)
Q Consensus 226 Vlvs~Gs~~~~---~~ll~~l~~~~~~~vv~G~~~~~------lp~nv~~~~~~~~--~pdlLa~adl~It~--gG~-~T 291 (838)
.+++.|..... ..+++++....+.++++|..... ..+||+++++++. ++++|+.||++|.. -|+ .+
T Consensus 197 ~il~~G~~~~~K~~~~li~a~~~~~~~l~ivG~g~~~~~l~~~~~~~V~~~g~~~~~~~~~~~~~ad~~v~ps~e~~g~~ 276 (351)
T cd03804 197 YYLSVGRLVPYKRIDLAIEAFNKLGKRLVVIGDGPELDRLRAKAGPNVTFLGRVSDEELRDLYARARAFLFPAEEDFGIV 276 (351)
T ss_pred EEEEEEcCccccChHHHHHHHHHCCCcEEEEECChhHHHHHhhcCCCEEEecCCCHHHHHHHHHhCCEEEECCcCCCCch
Confidence 35667776653 23344332222777888865431 5789999998865 67899999999953 233 46
Q ss_pred HHHHHHcCCcEEEEeCCCCCChHHHHHHHHHcCcEEEEecCCCChhhHHHHHHHHhhCC
Q 003222 292 VSEALAYKLPFVFVRRDYFNEEPFLRNMLEFYQGGVEMIRRDLLTGHWKPYLERAISLK 350 (838)
Q Consensus 292 v~Eal~~GvP~l~iP~~~~~EQ~~Na~~l~~~G~g~~l~~~~~~~~~l~~~l~~ll~~~ 350 (838)
+.|||++|+|+|+.......|. ++..+.|..++..+ ++.+.++|.++++++
T Consensus 277 ~~Eama~G~Pvi~~~~~~~~e~------i~~~~~G~~~~~~~--~~~la~~i~~l~~~~ 327 (351)
T cd03804 277 PVEAMASGTPVIAYGKGGALET------VIDGVTGILFEEQT--VESLAAAVERFEKNE 327 (351)
T ss_pred HHHHHHcCCCEEEeCCCCCcce------eeCCCCEEEeCCCC--HHHHHHHHHHHHhCc
Confidence 8899999999999875444443 55567898887665 467889999998876
|
wbaZ in Salmonella enterica has been shown to possess the mannosyl transferase activity. The members of this family are found in certain bacteria and Archaea. |
| >TIGR02468 sucrsPsyn_pln sucrose phosphate synthase/possible sucrose phosphate phosphatase, plant | Back alignment and domain information |
|---|
Probab=98.09 E-value=0.00062 Score=84.15 Aligned_cols=83 Identities=17% Similarity=0.102 Sum_probs=61.8
Q ss_pred CCCCeEECCCC--CCHHHHHhhc----CEEEecC---C-hhhHHHHHHcCCcEEEEeCCCCCChHHHHHHHHHcCcEEEE
Q 003222 260 LPPNFIKLPKD--AYTPDFMAAS----DCMLGKI---G-YGTVSEALAYKLPFVFVRRDYFNEEPFLRNMLEFYQGGVEM 329 (838)
Q Consensus 260 lp~nv~~~~~~--~~~pdlLa~a----dl~It~g---G-~~Tv~Eal~~GvP~l~iP~~~~~EQ~~Na~~l~~~G~g~~l 329 (838)
+..+|.+.++. ..+|++|+.| |+||.-+ | ..++.|||+||+|+|+....+.. +.++....|+.+
T Consensus 546 L~g~V~FlG~v~~edvp~lYr~Ad~s~DVFV~PS~~EgFGLvlLEAMAcGlPVVASdvGG~~------EII~~g~nGlLV 619 (1050)
T TIGR02468 546 LYGQVAYPKHHKQSDVPDIYRLAAKTKGVFINPAFIEPFGLTLIEAAAHGLPMVATKNGGPV------DIHRVLDNGLLV 619 (1050)
T ss_pred CCCeEEecCCCCHHHHHHHHHHhhhcCCeeeCCcccCCCCHHHHHHHHhCCCEEEeCCCCcH------HHhccCCcEEEE
Confidence 35678888774 4678899876 6999742 3 25899999999999998754333 234555678888
Q ss_pred ecCCCChhhHHHHHHHHhhCC
Q 003222 330 IRRDLLTGHWKPYLERAISLK 350 (838)
Q Consensus 330 ~~~~~~~~~l~~~l~~ll~~~ 350 (838)
++.+ ++.|.++|.++++++
T Consensus 620 dP~D--~eaLA~AL~~LL~Dp 638 (1050)
T TIGR02468 620 DPHD--QQAIADALLKLVADK 638 (1050)
T ss_pred CCCC--HHHHHHHHHHHhhCH
Confidence 8766 468999999999876
|
Members of this family are sucrose-phosphate synthases of plants. This enzyme is known to exist in multigene families in several species of both monocots and dicots. The N-terminal domain is the glucosyltransferase domain. Members of this family also have a variable linker region and a C-terminal domain that resembles sucrose phosphate phosphatase (SPP) (EC 3.1.3.24) (see TIGR01485), the next and final enzyme of sucrose biosynthesis. The SPP-like domain likely serves a binding and not a catalytic function, as the reported SPP is always encoded by a distinct protein. |
| >PLN02407 diphosphomevalonate decarboxylase | Back alignment and domain information |
|---|
Probab=98.09 E-value=4e-05 Score=83.29 Aligned_cols=60 Identities=23% Similarity=0.303 Sum_probs=52.7
Q ss_pred EEEEEe--CCCCCCCCChHHHHHHHHHHHHHHHhCCCCC-HHHHHHHHHHHHhhhcCCCCChhhHHHhhcCCC
Q 003222 633 SMLVSS--AVPEGKGVSSSASVEVASMSAIAAAHGLNIH-PRDLALLCQKVENHIVGAPCGVMDQMASACGEA 702 (838)
Q Consensus 633 ~i~i~s--~iP~g~GLgSSAA~~va~~~al~~l~~~~l~-~~ela~~a~~~E~~~~G~~~G~mDq~a~~~G~~ 702 (838)
++.|.| ++|.++||+||||..+|++.|+..+++++++ +.++..+|. +| || .|.- |++||.
T Consensus 105 ~~~I~S~N~~PtaaGLaSSAs~~aAl~~al~~~~~~~~~~~~~ls~lAr------~G--SG-Sa~r-S~~Gg~ 167 (343)
T PLN02407 105 HVHIASYNNFPTAAGLASSAAGFACLVFALAKLMNVKEDFPGELSAIAR------QG--SG-SACR-SLYGGF 167 (343)
T ss_pred cEEEEeccCCccccchHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHh------cc--Ch-HHHH-HhhCCe
Confidence 677777 9999999999999999999999999999999 999999998 45 56 4555 999994
|
|
| >PLN02316 synthase/transferase | Back alignment and domain information |
|---|
Probab=98.02 E-value=0.003 Score=78.44 Aligned_cols=137 Identities=18% Similarity=0.104 Sum_probs=83.7
Q ss_pred hHHHHHHhCCCCCCcEEEEEcCCCCc--hhhh-HHh---hCCCCcEEEEeCCCCC-----C-----------CCCCeEEC
Q 003222 210 RKEVRKELGIEDDVKLLILNFGGQPA--GWKL-KEE---YLPSGWKCLVCGASDS-----Q-----------LPPNFIKL 267 (838)
Q Consensus 210 ~~~~r~~l~~~~~~~~Vlvs~Gs~~~--~~~l-l~~---l~~~~~~~vv~G~~~~-----~-----------lp~nv~~~ 267 (838)
+..+++.+|++.....+++..|.... +.++ +.+ ++..+.+++++|..+. . .+.+|.+.
T Consensus 826 k~~Lr~~lGL~~~d~plVg~VGRL~~qKGvdlLi~Al~~ll~~~~qlVIvG~Gpd~~~e~~l~~La~~Lg~~~~~rV~f~ 905 (1036)
T PLN02316 826 KEALQQRLGLKQADLPLVGIITRLTHQKGIHLIKHAIWRTLERNGQVVLLGSAPDPRIQNDFVNLANQLHSSHHDRARLC 905 (1036)
T ss_pred HHHHHHHhCCCcccCeEEEEEeccccccCHHHHHHHHHHHhhcCcEEEEEeCCCCHHHHHHHHHHHHHhCccCCCeEEEE
Confidence 34578889987433346667777664 2233 332 3345677888886531 0 14567654
Q ss_pred CCCCC-HH-HHHhhcCEEEec-----CChhhHHHHHHcCCcEEEEeCCCCCChHHHH-------HHHHHcCcEEEEecCC
Q 003222 268 PKDAY-TP-DFMAASDCMLGK-----IGYGTVSEALAYKLPFVFVRRDYFNEEPFLR-------NMLEFYQGGVEMIRRD 333 (838)
Q Consensus 268 ~~~~~-~p-dlLa~adl~It~-----gG~~Tv~Eal~~GvP~l~iP~~~~~EQ~~Na-------~~l~~~G~g~~l~~~~ 333 (838)
+..+. +. .+++.||+|+.- +| .+.+|||++|+|.|+....+..|..... +.....+.|..++..+
T Consensus 906 g~~de~lah~iyaaADiflmPS~~EP~G-LvqLEAMa~GtppVvs~vGGL~DtV~d~d~~~~~~~~~g~~~tGflf~~~d 984 (1036)
T PLN02316 906 LTYDEPLSHLIYAGADFILVPSIFEPCG-LTQLTAMRYGSIPVVRKTGGLFDTVFDVDHDKERAQAQGLEPNGFSFDGAD 984 (1036)
T ss_pred ecCCHHHHHHHHHhCcEEEeCCcccCcc-HHHHHHHHcCCCeEEEcCCCcHhhccccccccccccccccCCceEEeCCCC
Confidence 33332 32 689999999963 24 6999999999999987654444431110 0000125688887655
Q ss_pred CChhhHHHHHHHHhhC
Q 003222 334 LLTGHWKPYLERAISL 349 (838)
Q Consensus 334 ~~~~~l~~~l~~ll~~ 349 (838)
++.+..+|.+++..
T Consensus 985 --~~aLa~AL~raL~~ 998 (1036)
T PLN02316 985 --AAGVDYALNRAISA 998 (1036)
T ss_pred --HHHHHHHHHHHHhh
Confidence 56788899888864
|
|
| >PLN02501 digalactosyldiacylglycerol synthase | Back alignment and domain information |
|---|
Probab=98.02 E-value=0.00024 Score=83.49 Aligned_cols=220 Identities=18% Similarity=0.188 Sum_probs=120.4
Q ss_pred HHHHHHHhcCCCcEEEECC-Cch-----HHHHHHHhCCcEEEE--ecCchhHHHHhhhhhccc-chHH----HH-HHHHh
Q 003222 108 KDEVEWLNSIKADLVVSDV-VPV-----ACRAAADAGIRSVCV--TNFSWDFIYAEYVMAAGH-HHRS----IV-WQIAE 173 (838)
Q Consensus 108 ~~~~~~L~~~kPDlVVsD~-~~~-----~~~aA~~lgIP~V~i--s~~~~~~i~~~~~~~~~~-~~~~----i~-~~l~~ 173 (838)
.+..+.|.+++||+|+... ..+ |..+|++++ |+|.+ |++. .|...++. .... .. ..+..
T Consensus 424 gdI~~~L~~f~PDVVHLatP~~LGw~~~Glr~ArKl~-PVVasyHTny~------eYl~~y~~g~L~~~llk~l~~~v~r 496 (794)
T PLN02501 424 GDTSQFIPSKDADIAILEEPEHLNWYHHGKRWTDKFN-HVVGVVHTNYL------EYIKREKNGALQAFFVKHINNWVTR 496 (794)
T ss_pred HHHHHHhhccCCCEEEECCchhhccHHHHHHHHHHcC-CeEEEEeCCcH------HHHhHhcchhHHHHHHHHHHHHHHH
Confidence 4557788999999999764 333 455899999 87765 5543 12221110 1111 11 12222
Q ss_pred hccccceEEecCCCCCCCCCC-ceee--cCcccccCCcC-hHHHHHHhCCCCCCcEEEEEcCCCCch---hhhHHhh---
Q 003222 174 DYSHCEFLIRLPGYCPMPAFR-DVID--VPLVVRRLHKS-RKEVRKELGIEDDVKLLILNFGGQPAG---WKLKEEY--- 243 (838)
Q Consensus 174 ~y~~~d~ll~~~~~~~~p~~~-~v~~--ip~~~~~~~~~-~~~~r~~l~~~~~~~~Vlvs~Gs~~~~---~~ll~~l--- 243 (838)
.| |+.++.+.... ..++ .++. .|+......+. +...++.++.....+. +++.|..... ..+++++
T Consensus 497 ~h--cD~VIaPS~at--q~L~~~vI~nVnGVDte~F~P~~r~~~~r~lgi~~~~kg-iLfVGRLa~EKGld~LLeAla~L 571 (794)
T PLN02501 497 AY--CHKVLRLSAAT--QDLPKSVICNVHGVNPKFLKIGEKVAEERELGQQAFSKG-AYFLGKMVWAKGYRELIDLLAKH 571 (794)
T ss_pred hh--CCEEEcCCHHH--HHhcccceeecccccccccCCcchhHHHHhcCCccccCc-eEEEEcccccCCHHHHHHHHHHH
Confidence 33 67666422110 0111 1111 24433322222 2222345555322222 3445665542 2333332
Q ss_pred C--CCCcEEEEeCCCCCC---------CCCCeEECCCCCCHHHHHhhcCEEEecC---C-hhhHHHHHHcCCcEEEEeCC
Q 003222 244 L--PSGWKCLVCGASDSQ---------LPPNFIKLPKDAYTPDFMAASDCMLGKI---G-YGTVSEALAYKLPFVFVRRD 308 (838)
Q Consensus 244 ~--~~~~~~vv~G~~~~~---------lp~nv~~~~~~~~~pdlLa~adl~It~g---G-~~Tv~Eal~~GvP~l~iP~~ 308 (838)
. .+++.++++|..+.. +.-++.++++.++.+++|+.+|+||.-+ | .+++.|||++|+|+|+...+
T Consensus 572 ~~~~pnvrLvIVGDGP~reeLe~la~eLgL~V~FLG~~dd~~~lyasaDVFVlPS~sEgFGlVlLEAMA~GlPVVATd~p 651 (794)
T PLN02501 572 KNELDGFNLDVFGNGEDAHEVQRAAKRLDLNLNFLKGRDHADDSLHGYKVFINPSISDVLCTATAEALAMGKFVVCADHP 651 (794)
T ss_pred HhhCCCeEEEEEcCCccHHHHHHHHHHcCCEEEecCCCCCHHHHHHhCCEEEECCCcccchHHHHHHHHcCCCEEEecCC
Confidence 1 246788888876531 2335777888877778999999999632 2 35899999999999998754
Q ss_pred CCCChHHHHHHHHHcCcEEEEecCCCChhhHHHHHHHHhhCC
Q 003222 309 YFNEEPFLRNMLEFYQGGVEMIRRDLLTGHWKPYLERAISLK 350 (838)
Q Consensus 309 ~~~EQ~~Na~~l~~~G~g~~l~~~~~~~~~l~~~l~~ll~~~ 350 (838)
. .+. +...+.|... .+ .+.+.++|.+++.++
T Consensus 652 G-~e~------V~~g~nGll~--~D--~EafAeAI~~LLsd~ 682 (794)
T PLN02501 652 S-NEF------FRSFPNCLTY--KT--SEDFVAKVKEALANE 682 (794)
T ss_pred C-Cce------EeecCCeEec--CC--HHHHHHHHHHHHhCc
Confidence 3 211 2222333322 22 578888999999866
|
|
| >PRK14613 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional | Back alignment and domain information |
|---|
Probab=97.97 E-value=6.1e-05 Score=82.03 Aligned_cols=109 Identities=6% Similarity=0.093 Sum_probs=72.4
Q ss_pred hHHHHHHHHHHHHHhCCCCCCCEEEEEEeCCCCCCCCChHHHHHHHHHHHHHHHhCCCCCH-HHHHHHHHHHHhhhcCCC
Q 003222 610 AAYVAGTILVLMTELGVRFEDSISMLVSSAVPEGKGVSSSASVEVASMSAIAAAHGLNIHP-RDLALLCQKVENHIVGAP 688 (838)
Q Consensus 610 ~~y~~g~i~~~~~~~g~~~~~g~~i~i~s~iP~g~GLgSSAA~~va~~~al~~l~~~~l~~-~ela~~a~~~E~~~~G~~ 688 (838)
.|.+.-++..+.+..|.. .|++|.|.++||.++|||||||..++++.+++..+++ +. +++.++|.+.|
T Consensus 74 ~Nlv~ka~~~~~~~~~~~--~~v~I~i~K~IP~~aGLGggSs~Aaa~l~~l~~~~~l--~~~e~L~~lA~~lG------- 142 (297)
T PRK14613 74 QNILYKTFIKARSLFPEL--PGVKIHLTKRISPAGGLGGGSTNAASLLNFLFSWRNF--FTSDEMQVFAKEIG------- 142 (297)
T ss_pred cchHHHHHHHHHHHhCCC--CCeEEEEEeCCCccCCccccHHHHHHHHHHHHhcCCC--CcHHHHHHHHHHhC-------
Confidence 567766667777666653 5899999999999999999999987777777665544 44 66776888763
Q ss_pred CChhhHHHhhcCCCCeEEEEEecCCceeeeeccCCCeEEEEEeCCCCCc
Q 003222 689 CGVMDQMASACGEANKLLAMVCQPAELLGVVEIPSHIRFWGIDSGIRHS 737 (838)
Q Consensus 689 ~G~mDq~a~~~G~~~~~l~~d~~~~~~~~~v~~~~~~~~vi~~s~~~~~ 737 (838)
.| .++.+||. ..+.... .+...+++++..+. +++..+..-+
T Consensus 143 ---aD-vP~~l~G~--~a~~~g~-Ge~~~~l~~~~~~~-vlv~P~~~vs 183 (297)
T PRK14613 143 ---SD-VPFFLGEG--HAFVTGK-GEIMEEIEVHKGQG-ILALTPQVMN 183 (297)
T ss_pred ---Cc-cchhhcCC--eEEEecC-CcEEEEcCCCCCeE-EEEECCCCcC
Confidence 27 44555553 2333323 33335666665554 5666665544
|
|
| >cd04950 GT1_like_1 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds | Back alignment and domain information |
|---|
Probab=97.96 E-value=0.00091 Score=75.46 Aligned_cols=115 Identities=21% Similarity=0.229 Sum_probs=75.6
Q ss_pred cEEEEEcCCCCch--hhhHHhhC--CCCcEEEEeCCCCC--C---C--CCCeEECCCCC--CHHHHHhhcCEEEec----
Q 003222 224 KLLILNFGGQPAG--WKLKEEYL--PSGWKCLVCGASDS--Q---L--PPNFIKLPKDA--YTPDFMAASDCMLGK---- 286 (838)
Q Consensus 224 ~~Vlvs~Gs~~~~--~~ll~~l~--~~~~~~vv~G~~~~--~---l--p~nv~~~~~~~--~~pdlLa~adl~It~---- 286 (838)
+.+++++|+.... .+++.++. .+++.++++|.... . + .+||+++++++ .+|.+|+++|++|.-
T Consensus 205 ~~~i~y~G~l~~~~d~~ll~~la~~~p~~~~vliG~~~~~~~~~~~~~~~nV~~~G~~~~~~l~~~l~~~Dv~l~P~~~~ 284 (373)
T cd04950 205 RPVIGYYGAIAEWLDLELLEALAKARPDWSFVLIGPVDVSIDPSALLRLPNVHYLGPKPYKELPAYLAGFDVAILPFRLN 284 (373)
T ss_pred CCEEEEEeccccccCHHHHHHHHHHCCCCEEEEECCCcCccChhHhccCCCEEEeCCCCHHHHHHHHHhCCEEecCCccc
Confidence 3466778887653 34444432 36788999987521 1 2 37999999873 678999999999852
Q ss_pred ----CC-hhhHHHHHHcCCcEEEEeCCCCCChHHHHHHHHHcCcEEEEecCCCChhhHHHHHHHHhhCC
Q 003222 287 ----IG-YGTVSEALAYKLPFVFVRRDYFNEEPFLRNMLEFYQGGVEMIRRDLLTGHWKPYLERAISLK 350 (838)
Q Consensus 287 ----gG-~~Tv~Eal~~GvP~l~iP~~~~~EQ~~Na~~l~~~G~g~~l~~~~~~~~~l~~~l~~ll~~~ 350 (838)
++ .+.+.|++++|+|+|..+.+ + ..+..+ +..+... +++.+.++|++++.++
T Consensus 285 ~~~~~~~P~Kl~EylA~G~PVVat~~~---~------~~~~~~-~~~~~~~--d~~~~~~ai~~~l~~~ 341 (373)
T cd04950 285 ELTRATSPLKLFEYLAAGKPVVATPLP---E------VRRYED-EVVLIAD--DPEEFVAAIEKALLED 341 (373)
T ss_pred hhhhcCCcchHHHHhccCCCEEecCcH---H------HHhhcC-cEEEeCC--CHHHHHHHHHHHHhcC
Confidence 22 24589999999999987621 1 122233 3333333 4678999999977544
|
The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center |
| >cd03806 GT1_ALG11_like This family is most closely related to the GT1 family of glycosyltransferases | Back alignment and domain information |
|---|
Probab=97.94 E-value=0.0023 Score=73.44 Aligned_cols=119 Identities=13% Similarity=0.017 Sum_probs=75.8
Q ss_pred CcEEEEEcCCCCch---hhhHHh---hC---C----CCcEEEEeCCCCC-----------------CCCCCeEECCCCC-
Q 003222 223 VKLLILNFGGQPAG---WKLKEE---YL---P----SGWKCLVCGASDS-----------------QLPPNFIKLPKDA- 271 (838)
Q Consensus 223 ~~~Vlvs~Gs~~~~---~~ll~~---l~---~----~~~~~vv~G~~~~-----------------~lp~nv~~~~~~~- 271 (838)
...++++.|..... ..++++ +. + ++++++++|.... .+.++|+++++.+
T Consensus 236 ~~~~il~vgr~~~~K~~~~li~A~~~l~~~~~~~~~~~~~lvivG~~~~~~~~~~~~~L~~~~~~l~l~~~V~f~g~v~~ 315 (419)
T cd03806 236 RENQILSIAQFRPEKNHPLQLRAFAKLLKRLPEEIKEKIKLVLIGSCRNEDDEKRVEDLKLLAKELGLEDKVEFVVNAPF 315 (419)
T ss_pred CCcEEEEEEeecCCCCHHHHHHHHHHHHHhCcccccCceEEEEEcCCCCcccHHHHHHHHHHHHHhCCCCeEEEecCCCH
Confidence 34577888866542 122222 21 2 2478888886421 1457899888753
Q ss_pred -CHHHHHhhcCEEEecC---Ch-hhHHHHHHcCCcEEEEeCCCCCChHHHHHHHH---HcCcEEEEecCCCChhhHHHHH
Q 003222 272 -YTPDFMAASDCMLGKI---GY-GTVSEALAYKLPFVFVRRDYFNEEPFLRNMLE---FYQGGVEMIRRDLLTGHWKPYL 343 (838)
Q Consensus 272 -~~pdlLa~adl~It~g---G~-~Tv~Eal~~GvP~l~iP~~~~~EQ~~Na~~l~---~~G~g~~l~~~~~~~~~l~~~l 343 (838)
.++.+|+.||++|... |+ .++.|||++|+|+|+....+..+ ..++ ....|.... +++.+.++|
T Consensus 316 ~~l~~~l~~adv~v~~s~~E~Fgi~~lEAMa~G~pvIa~~~ggp~~-----~iv~~~~~g~~G~l~~----d~~~la~ai 386 (419)
T cd03806 316 EELLEELSTASIGLHTMWNEHFGIGVVEYMAAGLIPLAHASGGPLL-----DIVVPWDGGPTGFLAS----TAEEYAEAI 386 (419)
T ss_pred HHHHHHHHhCeEEEECCccCCcccHHHHHHHcCCcEEEEcCCCCch-----heeeccCCCCceEEeC----CHHHHHHHH
Confidence 4568999999998522 22 48899999999999876322111 1122 345676652 467899999
Q ss_pred HHHhhCC
Q 003222 344 ERAISLK 350 (838)
Q Consensus 344 ~~ll~~~ 350 (838)
.++++++
T Consensus 387 ~~ll~~~ 393 (419)
T cd03806 387 EKILSLS 393 (419)
T ss_pred HHHHhCC
Confidence 9999765
|
ALG11 in yeast is involved in adding the final 1,2-linked Man to the Man5GlcNAc2-PP-Dol synthesized on the cytosolic face of the ER. The deletion analysis of ALG11 was shown to block the early steps of core biosynthesis that takes place on the cytoplasmic face of the ER and lead to a defect in the assembly of lipid-linked oligosaccharides. |
| >COG1817 Uncharacterized protein conserved in archaea [Function unknown] | Back alignment and domain information |
|---|
Probab=97.93 E-value=0.0021 Score=68.13 Aligned_cols=281 Identities=15% Similarity=0.113 Sum_probs=139.2
Q ss_pred cccHHHHHHHHHHHHHCCCeEEEEeCCCCcccccccCCCceeeeeeccCCCcccccccccChHHHHH-HHHHHhhccHHH
Q 003222 27 FGHATRVVEVVRNLISAGHDVHVVTGAPDFVFTSEIQSPRLFIRKVLLDCGAVQADALTVDRLASLE-KYSETAVAPRKS 105 (838)
Q Consensus 27 ~GHv~r~laLA~~L~~~Gh~V~~v~~~~~~~~~~~i~~~~~~~~~~~~~~g~~~~~~~~~~~~~~l~-~~~~~~~~~~~~ 105 (838)
.-|+-....+..+|.++||+|.+.|..-..+ ...+..-++.+..++-. | .. ++. ++..+. .
T Consensus 10 ~~hvhfFk~lI~elekkG~ev~iT~rd~~~v-~~LLd~ygf~~~~Igk~-g-------~~----tl~~Kl~~~~-----e 71 (346)
T COG1817 10 PPHVHFFKNLIWELEKKGHEVLITCRDFGVV-TELLDLYGFPYKSIGKH-G-------GV----TLKEKLLESA-----E 71 (346)
T ss_pred cchhhHHHHHHHHHHhCCeEEEEEEeecCcH-HHHHHHhCCCeEeeccc-C-------Cc----cHHHHHHHHH-----H
Confidence 3688889999999999999999987643211 11111112333332111 1 01 122 233321 1
Q ss_pred HHHHHHHHHhcCCCcEEEECCCchHHHHHHHhCCcEEEEecCchhH-------HHHhhhhhcccchHHHHHHHHhhcccc
Q 003222 106 ILKDEVEWLNSIKADLVVSDVVPVACRAAADAGIRSVCVTNFSWDF-------IYAEYVMAAGHHHRSIVWQIAEDYSHC 178 (838)
Q Consensus 106 ~l~~~~~~L~~~kPDlVVsD~~~~~~~aA~~lgIP~V~is~~~~~~-------i~~~~~~~~~~~~~~i~~~l~~~y~~~ 178 (838)
....+.+++.+++||+.+.-+.+-....|.-+|+|++.+.|.-... .+..+... +...+. +.+.......
T Consensus 72 R~~~L~ki~~~~kpdv~i~~~s~~l~rvafgLg~psIi~~D~ehA~~qnkl~~Pla~~ii~-P~~~~~--~~~~~~G~~p 148 (346)
T COG1817 72 RVYKLSKIIAEFKPDVAIGKHSPELPRVAFGLGIPSIIFVDNEHAEAQNKLTLPLADVIIT-PEAIDE--EELLDFGADP 148 (346)
T ss_pred HHHHHHHHHhhcCCceEeecCCcchhhHHhhcCCceEEecCChhHHHHhhcchhhhhheec-ccccch--HHHHHhCCCc
Confidence 2334467789999999999777777788888999998874432110 00000000 000000 0000111110
Q ss_pred ceEEecCCCCCCCCCCceeecCcccccCCcChHHHHHHhCCCCCCcEEEEEcCCCCch-------hhhHHhhCC--CCcE
Q 003222 179 EFLIRLPGYCPMPAFRDVIDVPLVVRRLHKSRKEVRKELGIEDDVKLLILNFGGQPAG-------WKLKEEYLP--SGWK 249 (838)
Q Consensus 179 d~ll~~~~~~~~p~~~~v~~ip~~~~~~~~~~~~~r~~l~~~~~~~~Vlvs~Gs~~~~-------~~ll~~l~~--~~~~ 249 (838)
.++.. +..+-.+-.+. ...+++ ++.+.||+..+.++|++=+=+.++. ..++..+++ ++.-
T Consensus 149 ~~i~~---------~~giae~~~v~-~f~pd~-evlkeLgl~~~~~yIVmRpe~~~A~y~~g~~~~~~~~~li~~l~k~g 217 (346)
T COG1817 149 NKISG---------YNGIAELANVY-GFVPDP-EVLKELGLEEGETYIVMRPEPWGAHYDNGDRGISVLPDLIKELKKYG 217 (346)
T ss_pred cceec---------ccceeEEeecc-cCCCCH-HHHHHcCCCCCCceEEEeeccccceeeccccchhhHHHHHHHHHhCc
Confidence 11110 00010110011 122333 5667899987778888755443331 112332221 2222
Q ss_pred EEEeCCCCCC--CC---CCeEECCCCCCHHHHHhhcCEEEecCChhhHHHHHHcCCcEEEEeCCCCCChHHHHHHHHHcC
Q 003222 250 CLVCGASDSQ--LP---PNFIKLPKDAYTPDFMAASDCMLGKIGYGTVSEALAYKLPFVFVRRDYFNEEPFLRNMLEFYQ 324 (838)
Q Consensus 250 ~vv~G~~~~~--lp---~nv~~~~~~~~~pdlLa~adl~It~gG~~Tv~Eal~~GvP~l~iP~~~~~EQ~~Na~~l~~~G 324 (838)
++++-+...+ .- .|+.+-....+.-++|-.|+++||.|| +.-.||+..|+|+|..- + +.--..-+++.+.|
T Consensus 218 iV~ipr~~~~~eife~~~n~i~pk~~vD~l~Llyya~lvig~gg-TMarEaAlLGtpaIs~~-p--Gkll~vdk~lie~G 293 (346)
T COG1817 218 IVLIPREKEQAEIFEGYRNIIIPKKAVDTLSLLYYATLVIGAGG-TMAREAALLGTPAISCY-P--GKLLAVDKYLIEKG 293 (346)
T ss_pred EEEecCchhHHHHHhhhccccCCcccccHHHHHhhhheeecCCc-hHHHHHHHhCCceEEec-C--CccccccHHHHhcC
Confidence 3333333222 11 222221111122258888999999555 77889999999999985 2 22223346778876
Q ss_pred cEEEEecCCCChhhHHHHHHHH
Q 003222 325 GGVEMIRRDLLTGHWKPYLERA 346 (838)
Q Consensus 325 ~g~~l~~~~~~~~~l~~~l~~l 346 (838)
.- ....+.. +.|..+++.+
T Consensus 294 ~~--~~s~~~~-~~~~~a~~~l 312 (346)
T COG1817 294 LL--YHSTDEI-AIVEYAVRNL 312 (346)
T ss_pred ce--eecCCHH-HHHHHHHHHh
Confidence 54 5443432 4454444333
|
|
| >PRK05905 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.91 E-value=0.00024 Score=75.34 Aligned_cols=115 Identities=15% Similarity=0.162 Sum_probs=78.3
Q ss_pred hHHHH-HHHHHHHHHhCCCCCCCEEEEEEeCCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhhhcCCC
Q 003222 610 AAYVA-GTILVLMTELGVRFEDSISMLVSSAVPEGKGVSSSASVEVASMSAIAAAHGLNIHPRDLALLCQKVENHIVGAP 688 (838)
Q Consensus 610 ~~y~~-g~i~~~~~~~g~~~~~g~~i~i~s~iP~g~GLgSSAA~~va~~~al~~l~~~~l~~~ela~~a~~~E~~~~G~~ 688 (838)
.|.+. -++..+.+..+.. .|+++.+..+||.|+||||++|=.+++..+++++++ ++.+++.++|.+.
T Consensus 66 ~nli~~ka~~~l~~~~~~~--~~~~i~l~K~IP~~aGLGggSSDAAa~L~~Ln~l~~--ls~~~L~~ia~~l-------- 133 (258)
T PRK05905 66 SRLILVKTLEWLRDKYNIK--NHFKIKIKKRIPIGSGLGSGSSNAAVLMKWILEFEG--INEINYKDVVNKL-------- 133 (258)
T ss_pred cchHHHHHHHHHHHHhCCC--CCeEEEEEeCCCCcCCCCCCchHHHHHHHHHHHHhC--CCHHHHHHHHHHh--------
Confidence 34444 4456566566653 589999999999999999999999999999999998 6888888887642
Q ss_pred CChhhHHHhhcC-CCCeEEEEEecCCceeeeeccCCCeEEEEEeCCCCCcCCCCch
Q 003222 689 CGVMDQMASACG-EANKLLAMVCQPAELLGVVEIPSHIRFWGIDSGIRHSVGGADY 743 (838)
Q Consensus 689 ~G~mDq~a~~~G-~~~~~l~~d~~~~~~~~~v~~~~~~~~vi~~s~~~~~~~~~~y 743 (838)
| .|---++.| +. ++. ..-.+..++++.+....+++++.++.=++ ..-|
T Consensus 134 -G-ADVPFfl~g~~~--a~~--~G~GE~l~pl~~~~~~~~vlv~P~~~vST-~~vY 182 (258)
T PRK05905 134 -G-SDIPFFLSGYKT--AYI--SDYGSQVEDLIGQFKLTYKVIFMNVNVST-KKVF 182 (258)
T ss_pred -C-CCcceEEeCCcc--EEE--EeeCceeEECCCCCCceEEEECCCCCCCH-HHHH
Confidence 2 355556777 53 222 23344446665443445778776554443 2345
|
|
| >PLN02939 transferase, transferring glycosyl groups | Back alignment and domain information |
|---|
Probab=97.91 E-value=0.0082 Score=73.53 Aligned_cols=137 Identities=18% Similarity=0.158 Sum_probs=85.9
Q ss_pred hHHHHHHhCCCCC--CcEEEEEcCCCCch--hh-hHHh---hCCCCcEEEEeCCCCC-----C---------CCCCeEEC
Q 003222 210 RKEVRKELGIEDD--VKLLILNFGGQPAG--WK-LKEE---YLPSGWKCLVCGASDS-----Q---------LPPNFIKL 267 (838)
Q Consensus 210 ~~~~r~~l~~~~~--~~~Vlvs~Gs~~~~--~~-ll~~---l~~~~~~~vv~G~~~~-----~---------lp~nv~~~ 267 (838)
+..+++.+|++.+ ...++.+.|..... .. ++.+ +...+..++++|..+. . ..++|.++
T Consensus 763 K~aLRkelGL~~~d~d~pLIg~VGRL~~QKGiDlLleA~~~Ll~~dvqLVIvGdGp~~~~e~eL~~La~~l~l~drV~Fl 842 (977)
T PLN02939 763 KAALRKQLGLSSADASQPLVGCITRLVPQKGVHLIRHAIYKTAELGGQFVLLGSSPVPHIQREFEGIADQFQSNNNIRLI 842 (977)
T ss_pred hHHHHHHhCCCcccccceEEEEeecCCcccChHHHHHHHHHHhhcCCEEEEEeCCCcHHHHHHHHHHHHHcCCCCeEEEE
Confidence 4578899998742 23466777776642 22 2222 3345678888886632 0 24578877
Q ss_pred CCCCCH--HHHHhhcCEEEecC----ChhhHHHHHHcCCcEEEEeCCCCCChHHH--HHHH-HHcCcEEEEecCCCChhh
Q 003222 268 PKDAYT--PDFMAASDCMLGKI----GYGTVSEALAYKLPFVFVRRDYFNEEPFL--RNML-EFYQGGVEMIRRDLLTGH 338 (838)
Q Consensus 268 ~~~~~~--pdlLa~adl~It~g----G~~Tv~Eal~~GvP~l~iP~~~~~EQ~~N--a~~l-~~~G~g~~l~~~~~~~~~ 338 (838)
++.+.. +.+++.+|+||.-+ -..+.+|||++|+|.|+....+..|...+ ...+ +..+.|..+...+ ++.
T Consensus 843 G~~de~lah~IYAaADIFLmPSr~EPfGLvqLEAMAyGtPPVVs~vGGL~DtV~d~d~e~i~~eg~NGfLf~~~D--~ea 920 (977)
T PLN02939 843 LKYDEALSHSIYAASDMFIIPSMFEPCGLTQMIAMRYGSVPIVRKTGGLNDSVFDFDDETIPVELRNGFTFLTPD--EQG 920 (977)
T ss_pred eccCHHHHHHHHHhCCEEEECCCccCCcHHHHHHHHCCCCEEEecCCCCcceeecCCccccccCCCceEEecCCC--HHH
Confidence 665543 47899999999632 23689999999999998765444442111 0011 1235687777654 467
Q ss_pred HHHHHHHHhh
Q 003222 339 WKPYLERAIS 348 (838)
Q Consensus 339 l~~~l~~ll~ 348 (838)
+..+|.+++.
T Consensus 921 La~AL~rAL~ 930 (977)
T PLN02939 921 LNSALERAFN 930 (977)
T ss_pred HHHHHHHHHH
Confidence 7788887764
|
|
| >COG4542 PduX Protein involved in propanediol utilization, and related proteins (includes coumermycin biosynthetic protein), possible kinase [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=97.88 E-value=5.7e-05 Score=77.05 Aligned_cols=101 Identities=22% Similarity=0.332 Sum_probs=74.4
Q ss_pred CCCEEEEEEeCCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhhhcCCCCChhhHHHhhcCCCCeEEEE
Q 003222 629 EDSISMLVSSAVPEGKGVSSSASVEVASMSAIAAAHGLNIHPRDLALLCQKVENHIVGAPCGVMDQMASACGEANKLLAM 708 (838)
Q Consensus 629 ~~g~~i~i~s~iP~g~GLgSSAA~~va~~~al~~l~~~~l~~~ela~~a~~~E~~~~G~~~G~mDq~a~~~G~~~~~l~~ 708 (838)
..|.++.+.|+||.|.||+||.|=.||++.|+...+|..+.+.+|+++|-.+| |+ |- +.|-+ +.++
T Consensus 81 ~~~i~l~lqSsIPvgKG~ASSTADl~At~~A~A~~l~~~l~es~iakLcv~iE------Pt---Ds--iiF~~---~tlF 146 (293)
T COG4542 81 NTGIDLLLQSSIPVGKGMASSTADLVATARATARFLGRELRESEIAKLCVSIE------PT---DS--IIFDK---ATLF 146 (293)
T ss_pred cCCeeEEEeccccccccccccHHHHHHHHHHHHHHhCCCCCHHHHHHHHhhcC------Cc---cc--eeccc---ceee
Confidence 36899999999999999999999999999999999999999999999999999 33 21 23333 4556
Q ss_pred EecCCceeeeeccCCCeEEEEEeCCCCCcCCCCchhh
Q 003222 709 VCQPAELLGVVEIPSHIRFWGIDSGIRHSVGGADYGS 745 (838)
Q Consensus 709 d~~~~~~~~~v~~~~~~~~vi~~s~~~~~~~~~~y~~ 745 (838)
|-+...+.+...-++.+.+++++.+..-++ .+|+.
T Consensus 147 d~r~g~~~~~~g~~PpL~ilv~e~~~~v~T--~~y~q 181 (293)
T COG4542 147 DQREGRVIEFLGEMPPLHILVFEGKGTVET--VDYNQ 181 (293)
T ss_pred hhccchHHHhcCCCCceEEEEEcCCCceee--eeccC
Confidence 655554433333234677777776654433 35654
|
|
| >PLN00142 sucrose synthase | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.0035 Score=76.10 Aligned_cols=125 Identities=15% Similarity=0.153 Sum_probs=74.1
Q ss_pred HHHhCC--CCCCcEEEEEcCCCCch---hhhHHhh-----CCCCcEEEEeCCC-CC----------------------CC
Q 003222 214 RKELGI--EDDVKLLILNFGGQPAG---WKLKEEY-----LPSGWKCLVCGAS-DS----------------------QL 260 (838)
Q Consensus 214 r~~l~~--~~~~~~Vlvs~Gs~~~~---~~ll~~l-----~~~~~~~vv~G~~-~~----------------------~l 260 (838)
++.++. +++++ ++++.|..... ..+++++ ..+++.++++|.. .+ .+
T Consensus 562 ~e~lg~l~~~~kp-vIl~VGRL~~~KGid~LIeA~a~l~~l~~~~~LVIVGgg~d~~~s~d~ee~~el~~L~~La~~lgL 640 (815)
T PLN00142 562 DEHIGYLKDRKKP-IIFSMARLDRVKNLTGLVEWYGKNKRLRELVNLVVVGGFIDPSKSKDREEIAEIKKMHSLIEKYNL 640 (815)
T ss_pred HHHhCCccCCCCc-EEEEEecCcccCCHHHHHHHHHHHHHhCCCcEEEEEECCccccccccHHHHHHHHHHHHHHHHcCC
Confidence 345664 33344 66788877653 2233432 1235677777643 10 03
Q ss_pred CCCeEECCCCCC---HHH---HHh-hcCEEEecC---Ch-hhHHHHHHcCCcEEEEeCCCCCChHHHHHHHHHcCcEEEE
Q 003222 261 PPNFIKLPKDAY---TPD---FMA-ASDCMLGKI---GY-GTVSEALAYKLPFVFVRRDYFNEEPFLRNMLEFYQGGVEM 329 (838)
Q Consensus 261 p~nv~~~~~~~~---~pd---lLa-~adl~It~g---G~-~Tv~Eal~~GvP~l~iP~~~~~EQ~~Na~~l~~~G~g~~l 329 (838)
..+|.++++... .++ +++ ++|+||.-+ |+ .++.|||+||+|+|+....+ ..+.++....|..+
T Consensus 641 ~~~V~flG~~~~~~~~~eLyr~iadaaDVfVlPS~~EgFGLvvLEAMA~GlPVVATdvGG------~~EIV~dG~tG~LV 714 (815)
T PLN00142 641 KGQFRWIAAQTNRVRNGELYRYIADTKGAFVQPALYEAFGLTVVEAMTCGLPTFATCQGG------PAEIIVDGVSGFHI 714 (815)
T ss_pred CCcEEEcCCcCCcccHHHHHHHHHhhCCEEEeCCcccCCCHHHHHHHHcCCCEEEcCCCC------HHHHhcCCCcEEEe
Confidence 466777665321 233 344 479999642 32 58999999999999976432 33445555679888
Q ss_pred ecCCCChhhHHHHHHHHh
Q 003222 330 IRRDLLTGHWKPYLERAI 347 (838)
Q Consensus 330 ~~~~~~~~~l~~~l~~ll 347 (838)
++.+ ++.+.++|.+++
T Consensus 715 ~P~D--~eaLA~aI~~lL 730 (815)
T PLN00142 715 DPYH--GDEAANKIADFF 730 (815)
T ss_pred CCCC--HHHHHHHHHHHH
Confidence 8766 356677766544
|
|
| >PF03033 Glyco_transf_28: Glycosyltransferase family 28 N-terminal domain; InterPro: IPR004276 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases | Back alignment and domain information |
|---|
Probab=97.82 E-value=1.1e-05 Score=77.23 Aligned_cols=113 Identities=23% Similarity=0.289 Sum_probs=59.7
Q ss_pred ecCCCcccHHHHHHHHHHHHHCCCeEEEEeCCCCcccccccCCCceeeeeeccCCCcccccccccChH-HHHHHHHHHhh
Q 003222 22 VTGHGFGHATRVVEVVRNLISAGHDVHVVTGAPDFVFTSEIQSPRLFIRKVLLDCGAVQADALTVDRL-ASLEKYSETAV 100 (838)
Q Consensus 22 v~g~G~GHv~r~laLA~~L~~~Gh~V~~v~~~~~~~~~~~i~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~l~~~~~~~~ 100 (838)
+++...||+.|+++||++|+++||+|++.+... +...+...++.+.+...+.. . ... ...........
T Consensus 4 ~~~Gt~Ghv~P~lala~~L~~rGh~V~~~~~~~---~~~~v~~~Gl~~~~~~~~~~------~--~~~~~~~~~~~~~~~ 72 (139)
T PF03033_consen 4 ATGGTRGHVYPFLALARALRRRGHEVRLATPPD---FRERVEAAGLEFVPIPGDSR------L--PRSLEPLANLRRLAR 72 (139)
T ss_dssp EEESSHHHHHHHHHHHHHHHHTT-EEEEEETGG---GHHHHHHTT-EEEESSSCGG------G--GHHHHHHHHHHCHHH
T ss_pred EEcCChhHHHHHHHHHHHHhccCCeEEEeeccc---ceecccccCceEEEecCCcC------c--CcccchhhhhhhHHH
Confidence 345557999999999999999999999888743 23333334555655322200 0 000 01111111100
Q ss_pred ccHHHHHHHHHHHHhc------------CCCcEEEECC-CchHHHHHHHhCCcEEEEecC
Q 003222 101 APRKSILKDEVEWLNS------------IKADLVVSDV-VPVACRAAADAGIRSVCVTNF 147 (838)
Q Consensus 101 ~~~~~~l~~~~~~L~~------------~kPDlVVsD~-~~~~~~aA~~lgIP~V~is~~ 147 (838)
....+.+..+.+++ ..+|+++.+. ...+..+|+.++||.+...-+
T Consensus 73 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~vaE~~~iP~~~~~~~ 130 (139)
T PF03033_consen 73 --LIRGLEEAMRILARFRPDLVVAAGGYVADDVIIAAPLAFAAALVAEQLGIPGVANRLF 130 (139)
T ss_dssp --HHHHHHHHHHHHHHHHHCCCCHCTTTTECCEECHHHHHTHHHHHHHHHTS-EEEEESS
T ss_pred --HhhhhhHHHHHhhccCcchhhhccCcccchHHHhhhhcCccceeEhhhCchHHHHhhC
Confidence 00012222233332 2456666554 556788899999999886433
|
These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC).; GO: 0016758 transferase activity, transferring hexosyl groups, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2IYF_B 2YJN_A 2P6P_A 1PNV_A 3H4T_A 3H4I_A 1PN3_B 3IA7_B 1NLM_B 1F0K_B .... |
| >PF02350 Epimerase_2: UDP-N-acetylglucosamine 2-epimerase; InterPro: IPR003331 UDP-N-acetylglucosamine 2-epimerase 5 | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.00013 Score=81.22 Aligned_cols=117 Identities=13% Similarity=0.070 Sum_probs=67.9
Q ss_pred CCCcEEEEEcCCCCc---h---hhh---HHhhCC-CCcEEEEeCCCCC-----------CCCCCeEECCCCCCH--HHHH
Q 003222 221 DDVKLLILNFGGQPA---G---WKL---KEEYLP-SGWKCLVCGASDS-----------QLPPNFIKLPKDAYT--PDFM 277 (838)
Q Consensus 221 ~~~~~Vlvs~Gs~~~---~---~~l---l~~l~~-~~~~~vv~G~~~~-----------~lp~nv~~~~~~~~~--pdlL 277 (838)
..++++++++=.... + ..+ +.++.. .++.+++...+.+ .+ +|+++++-..+. -.+|
T Consensus 178 ~~~~~iLvt~H~~t~~~~~~~~~~i~~~l~~L~~~~~~~vi~~~hn~p~~~~~i~~~l~~~-~~v~~~~~l~~~~~l~ll 256 (346)
T PF02350_consen 178 APKPYILVTLHPVTNEDNPERLEQILEALKALAERQNVPVIFPLHNNPRGSDIIIEKLKKY-DNVRLIEPLGYEEYLSLL 256 (346)
T ss_dssp TTSEEEEEE-S-CCCCTHH--HHHHHHHHHHHHHHTTEEEEEE--S-HHHHHHHHHHHTT--TTEEEE----HHHHHHHH
T ss_pred cCCCEEEEEeCcchhcCChHHHHHHHHHHHHHHhcCCCcEEEEecCCchHHHHHHHHhccc-CCEEEECCCCHHHHHHHH
Confidence 477899998832221 1 122 223322 4666666655432 14 588876443322 2788
Q ss_pred hhcCEEEecCChhhHH-HHHHcCCcEEEEeCCCCCChHHHHHHHHHcCcEEEEecCCCChhhHHHHHHHHhhC
Q 003222 278 AASDCMLGKIGYGTVS-EALAYKLPFVFVRRDYFNEEPFLRNMLEFYQGGVEMIRRDLLTGHWKPYLERAISL 349 (838)
Q Consensus 278 a~adl~It~gG~~Tv~-Eal~~GvP~l~iP~~~~~EQ~~Na~~l~~~G~g~~l~~~~~~~~~l~~~l~~ll~~ 349 (838)
++|+++||-+| ++. ||.++|+|+|.+. ...| .+.....|..+.+. ..++.+..++++++..
T Consensus 257 ~~a~~vvgdSs--GI~eEa~~lg~P~v~iR--~~ge----Rqe~r~~~~nvlv~---~~~~~I~~ai~~~l~~ 318 (346)
T PF02350_consen 257 KNADLVVGDSS--GIQEEAPSLGKPVVNIR--DSGE----RQEGRERGSNVLVG---TDPEAIIQAIEKALSD 318 (346)
T ss_dssp HHESEEEESSH--HHHHHGGGGT--EEECS--SS-S-----HHHHHTTSEEEET---SSHHHHHHHHHHHHH-
T ss_pred hcceEEEEcCc--cHHHHHHHhCCeEEEec--CCCC----CHHHHhhcceEEeC---CCHHHHHHHHHHHHhC
Confidence 89999999999 666 9999999999995 2333 33456677777744 3467888999998865
|
1.3.14 from EC catalyses the production of UDP-ManNAc from UDP-GlcNAc. Some of the enzymes is this family are bifunctional. In microorganisms the epimerase is involved in in the synthesis of the capsule precursor UDP-ManNAcA [, ]. The protein from rat liver displays both epimerase and kinase activity [].; GO: 0008761 UDP-N-acetylglucosamine 2-epimerase activity, 0006047 UDP-N-acetylglucosamine metabolic process, 0009103 lipopolysaccharide biosynthetic process; PDB: 1V4V_B 3BEO_B 3DZC_B 3OT5_B 1O6C_B 1VGV_D 1F6D_C. |
| >COG1947 IspE 4-diphosphocytidyl-2C-methyl-D-erythritol 2-phosphate synthase [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.00086 Score=71.50 Aligned_cols=109 Identities=21% Similarity=0.267 Sum_probs=78.1
Q ss_pred HHHHHHHHHHHHHhCCCCCCCEEEEEEeCCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhhhcCCCCC
Q 003222 611 AYVAGTILVLMTELGVRFEDSISMLVSSAVPEGKGVSSSASVEVASMSAIAAAHGLNIHPRDLALLCQKVENHIVGAPCG 690 (838)
Q Consensus 611 ~y~~g~i~~~~~~~g~~~~~g~~i~i~s~iP~g~GLgSSAA~~va~~~al~~l~~~~l~~~ela~~a~~~E~~~~G~~~G 690 (838)
|.+.-+...+.+..+. ..|++|.++.+||+|+|||+=+|=..++..+|+++++..++.+||+.++.+. |
T Consensus 67 NLv~rAa~ll~~~~~~--~~~v~I~l~K~IPv~aGLGGGSSdAAa~L~~Ln~lw~~~ls~~eL~~Lg~~L-----G---- 135 (289)
T COG1947 67 NLVYRAAELLRKRTGI--AGGVSIHLDKNIPVGAGLGGGSSDAAAVLVALNELWGLGLSLEELAELGLRL-----G---- 135 (289)
T ss_pred hHHHHHHHHHHHHhCC--CCCeeEEEEecCcccCcCccchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHh-----C----
Confidence 6665555666666774 3689999999999999999888888889999999999999999999998753 2
Q ss_pred hhhHHHhhcCCCCeEEEEEecCCceeeeeccCCCeEEEEEeCCCC
Q 003222 691 VMDQMASACGEANKLLAMVCQPAELLGVVEIPSHIRFWGIDSGIR 735 (838)
Q Consensus 691 ~mDq~a~~~G~~~~~l~~d~~~~~~~~~v~~~~~~~~vi~~s~~~ 735 (838)
.|--.+++||. + +. ..-.+..++++-++...+++++-++.
T Consensus 136 -aDVPffl~g~t--A-~a-~G~GE~l~~~~~~~~~~~vl~~P~v~ 175 (289)
T COG1947 136 -ADVPFFLSGGT--A-FA-EGRGEKLEPLEDPPEKWYVLAKPGVG 175 (289)
T ss_pred -CCcCeeeeCCc--e-EE-EEccceeeECCCCCCceEEEEeCCCC
Confidence 35555777774 2 22 22334446665233445566665443
|
|
| >PF00534 Glycos_transf_1: Glycosyl transferases group 1; InterPro: IPR001296 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.00012 Score=72.43 Aligned_cols=132 Identities=18% Similarity=0.129 Sum_probs=91.3
Q ss_pred hHHHHHHhCCCCCCcEEEEEcCCCCch---hhhHH---hhC---CCCcEEEEeCCCCC-----------CCCCCeEECCC
Q 003222 210 RKEVRKELGIEDDVKLLILNFGGQPAG---WKLKE---EYL---PSGWKCLVCGASDS-----------QLPPNFIKLPK 269 (838)
Q Consensus 210 ~~~~r~~l~~~~~~~~Vlvs~Gs~~~~---~~ll~---~l~---~~~~~~vv~G~~~~-----------~lp~nv~~~~~ 269 (838)
++.++...+.+ +.+.++++.|..... ..+++ .+. .+++.++++|.... .+..+++++++
T Consensus 2 ~~~~~~~~~~~-~~~~~il~~g~~~~~K~~~~li~a~~~l~~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~i~~~~~ 80 (172)
T PF00534_consen 2 KDKLREKLKIP-DKKKIILFIGRLDPEKGIDLLIEAFKKLKEKKNPNYKLVIVGDGEYKKELKNLIEKLNLKENIIFLGY 80 (172)
T ss_dssp HHHHHHHTTT--TTSEEEEEESESSGGGTHHHHHHHHHHHHHHHHTTEEEEEESHCCHHHHHHHHHHHTTCGTTEEEEES
T ss_pred hHHHHHHcCCC-CCCeEEEEEecCccccCHHHHHHHHHHHHhhcCCCeEEEEEccccccccccccccccccccccccccc
Confidence 45667777765 555677778877653 12222 221 46778888994331 15678988877
Q ss_pred CC--CHHHHHhhcCEEEec----CChhhHHHHHHcCCcEEEEeCCCCCChHHHHHHHHHcCcEEEEecCCCChhhHHHHH
Q 003222 270 DA--YTPDFMAASDCMLGK----IGYGTVSEALAYKLPFVFVRRDYFNEEPFLRNMLEFYQGGVEMIRRDLLTGHWKPYL 343 (838)
Q Consensus 270 ~~--~~pdlLa~adl~It~----gG~~Tv~Eal~~GvP~l~iP~~~~~EQ~~Na~~l~~~G~g~~l~~~~~~~~~l~~~l 343 (838)
.. .+.+++..||++|.. +...++.||+++|+|+|+... ..+.+.+.....|..++.. +.+.+.++|
T Consensus 81 ~~~~~l~~~~~~~di~v~~s~~e~~~~~~~Ea~~~g~pvI~~~~------~~~~e~~~~~~~g~~~~~~--~~~~l~~~i 152 (172)
T PF00534_consen 81 VPDDELDELYKSSDIFVSPSRNEGFGLSLLEAMACGCPVIASDI------GGNNEIINDGVNGFLFDPN--DIEELADAI 152 (172)
T ss_dssp HSHHHHHHHHHHTSEEEE-BSSBSS-HHHHHHHHTT-EEEEESS------THHHHHSGTTTSEEEESTT--SHHHHHHHH
T ss_pred ccccccccccccceeccccccccccccccccccccccceeeccc------cCCceeeccccceEEeCCC--CHHHHHHHH
Confidence 65 566889999999975 455689999999999998752 2455667777779999876 457899999
Q ss_pred HHHhhCC
Q 003222 344 ERAISLK 350 (838)
Q Consensus 344 ~~ll~~~ 350 (838)
.+++.++
T Consensus 153 ~~~l~~~ 159 (172)
T PF00534_consen 153 EKLLNDP 159 (172)
T ss_dssp HHHHHHH
T ss_pred HHHHCCH
Confidence 9998765
|
These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Proteins containign this domain transfer UDP, ADP, GDP or CMP linked sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. The bacterial enzymes are involved in various biosynthetic processes that include exopolysaccharide biosynthesis, lipopolysaccharide core biosynthesis and the biosynthesis of the slime polysaccaride colanic acid. Mutations in this domain of the human N-acetylglucosaminyl-phosphatidylinositol biosynthetic protein are the cause of paroxysmal nocturnal hemoglobinuria (PNH), an acquired hemolytic blood disorder characterised by venous thrombosis, erythrocyte hemolysis, infections and defective hematopoiesis.; GO: 0009058 biosynthetic process; PDB: 2L7C_A 2IV3_B 2IUY_B 2XA9_A 2XA1_B 2X6R_A 2XMP_B 2XA2_B 2X6Q_A 3QHP_B .... |
| >cd03813 GT1_like_3 This family is most closely related to the GT1 family of glycosyltransferases | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.0011 Score=77.31 Aligned_cols=120 Identities=14% Similarity=0.035 Sum_probs=82.4
Q ss_pred CCcEEEEEcCCCCch---hhhHHh---hC--CCCcEEEEeCCCCC---------------CCCCCeEECCCCCCHHHHHh
Q 003222 222 DVKLLILNFGGQPAG---WKLKEE---YL--PSGWKCLVCGASDS---------------QLPPNFIKLPKDAYTPDFMA 278 (838)
Q Consensus 222 ~~~~Vlvs~Gs~~~~---~~ll~~---l~--~~~~~~vv~G~~~~---------------~lp~nv~~~~~~~~~pdlLa 278 (838)
+.+.++++.|..... ..++++ +. .+++.++++|.... .+.+||++++ ...++++|+
T Consensus 291 ~~~~~i~~vGrl~~~Kg~~~li~a~~~l~~~~p~~~l~IvG~g~~~~~~~~e~~~li~~l~l~~~V~f~G-~~~v~~~l~ 369 (475)
T cd03813 291 KEPPVVGLIGRVVPIKDIKTFIRAAAIVRKKIPDAEGWVIGPTDEDPEYAEECRELVESLGLEDNVKFTG-FQNVKEYLP 369 (475)
T ss_pred CCCcEEEEEeccccccCHHHHHHHHHHHHHhCCCeEEEEECCCCcChHHHHHHHHHHHHhCCCCeEEEcC-CccHHHHHH
Confidence 344577788877642 223332 21 25678888886521 1467899999 467889999
Q ss_pred hcCEEEecC----ChhhHHHHHHcCCcEEEEeCCCCCChHHHHHHHHHc------CcEEEEecCCCChhhHHHHHHHHhh
Q 003222 279 ASDCMLGKI----GYGTVSEALAYKLPFVFVRRDYFNEEPFLRNMLEFY------QGGVEMIRRDLLTGHWKPYLERAIS 348 (838)
Q Consensus 279 ~adl~It~g----G~~Tv~Eal~~GvP~l~iP~~~~~EQ~~Na~~l~~~------G~g~~l~~~~~~~~~l~~~l~~ll~ 348 (838)
.+|++|..+ -.+++.|||++|+|+|+..... ..+.++.. ..|.+++..+ ++.+.++|.++++
T Consensus 370 ~aDv~vlpS~~Eg~p~~vlEAma~G~PVVatd~g~------~~elv~~~~~~~~g~~G~lv~~~d--~~~la~ai~~ll~ 441 (475)
T cd03813 370 KLDVLVLTSISEGQPLVILEAMAAGIPVVATDVGS------CRELIEGADDEALGPAGEVVPPAD--PEALARAILRLLK 441 (475)
T ss_pred hCCEEEeCchhhcCChHHHHHHHcCCCEEECCCCC------hHHHhcCCcccccCCceEEECCCC--HHHHHHHHHHHhc
Confidence 999999543 3358999999999999965322 23344442 3688887666 4688999999987
Q ss_pred CC
Q 003222 349 LK 350 (838)
Q Consensus 349 ~~ 350 (838)
++
T Consensus 442 ~~ 443 (475)
T cd03813 442 DP 443 (475)
T ss_pred CH
Confidence 65
|
Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog |
| >COG3407 MVD1 Mevalonate pyrophosphate decarboxylase [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.00051 Score=74.25 Aligned_cols=81 Identities=17% Similarity=0.206 Sum_probs=67.2
Q ss_pred hHHHHHHHHHHHHHhCCCCCCCEEEEEEeCCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhhhcCCCC
Q 003222 610 AAYVAGTILVLMTELGVRFEDSISMLVSSAVPEGKGVSSSASVEVASMSAIAAAHGLNIHPRDLALLCQKVENHIVGAPC 689 (838)
Q Consensus 610 ~~y~~g~i~~~~~~~g~~~~~g~~i~i~s~iP~g~GLgSSAA~~va~~~al~~l~~~~l~~~ela~~a~~~E~~~~G~~~ 689 (838)
...++.++..+.++.|.. .++.|...++.|-++||+||||...|++.|++.++++.++..++.++|..+- |..|
T Consensus 71 ~~k~~~~ld~~R~~~~~~--~~~~i~s~n~~ptaaGLaSSaag~AAl~~Al~~~~~~~~d~~~lS~~AR~gS----GSa~ 144 (329)
T COG3407 71 NEKARRVLDRFRKEYGIS--FKVKIVSYNNFPTAAGLASSAAGAAALAAALNRLYDLDLDDEFLSRIARLGS----GSAS 144 (329)
T ss_pred HHHHHHHHHHHHHhhccc--ceEEEEEecCCCccccccccHHHHHHHHHHHHhhhccCCCHHHHHHHHHHhc----cchh
Confidence 566777777765566654 5799999999999999999999999999999999999999999999998532 4443
Q ss_pred ChhhHHHhhcCCC
Q 003222 690 GVMDQMASACGEA 702 (838)
Q Consensus 690 G~mDq~a~~~G~~ 702 (838)
-+++||.
T Consensus 145 ------RS~~Gg~ 151 (329)
T COG3407 145 ------RSIFGGF 151 (329)
T ss_pred ------hhhcCCe
Confidence 3899995
|
|
| >COG0381 WecB UDP-N-acetylglucosamine 2-epimerase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.014 Score=64.36 Aligned_cols=100 Identities=18% Similarity=0.105 Sum_probs=71.3
Q ss_pred CCeEECCCCCCHH--HHHhhcCEEEecCChhhHHHHHHcCCcEEEEeCCCCCChHHHHHHHHHcCcEEEEecCCCChhhH
Q 003222 262 PNFIKLPKDAYTP--DFMAASDCMLGKIGYGTVSEALAYKLPFVFVRRDYFNEEPFLRNMLEFYQGGVEMIRRDLLTGHW 339 (838)
Q Consensus 262 ~nv~~~~~~~~~p--dlLa~adl~It~gG~~Tv~Eal~~GvP~l~iP~~~~~EQ~~Na~~l~~~G~g~~l~~~~~~~~~l 339 (838)
+||++++-..+.+ -+|.+|-+++|-+| +-.-||-.+|+|++++. ...|++. ....|.-+.+.. +.+.+
T Consensus 262 ~~v~li~pl~~~~f~~L~~~a~~iltDSG-giqEEAp~lg~Pvl~lR--~~TERPE----~v~agt~~lvg~---~~~~i 331 (383)
T COG0381 262 ERVKLIDPLGYLDFHNLMKNAFLILTDSG-GIQEEAPSLGKPVLVLR--DTTERPE----GVEAGTNILVGT---DEENI 331 (383)
T ss_pred CcEEEeCCcchHHHHHHHHhceEEEecCC-chhhhHHhcCCcEEeec--cCCCCcc----ceecCceEEeCc---cHHHH
Confidence 4577665444444 78899999999999 67889999999999998 5677754 334555555543 24678
Q ss_pred HHHHHHHhhCCCCcc---------CCCCHHHHHHHHHHHHh
Q 003222 340 KPYLERAISLKPCYE---------GGINGGEVAAHILQETA 371 (838)
Q Consensus 340 ~~~l~~ll~~~~~~~---------~~~~g~~~~a~~i~~~~ 371 (838)
.+++.++++++..|. ......+++++.+..+.
T Consensus 332 ~~~~~~ll~~~~~~~~m~~~~npYgdg~as~rIv~~l~~~~ 372 (383)
T COG0381 332 LDAATELLEDEEFYERMSNAKNPYGDGNASERIVEILLNYF 372 (383)
T ss_pred HHHHHHHhhChHHHHHHhcccCCCcCcchHHHHHHHHHHHh
Confidence 889999998754432 34446777777777764
|
|
| >cd04949 GT1_gtfA_like This family is most closely related to the GT1 family of glycosyltransferases and is named after gtfA in Streptococcus gordonii, where it plays a role in the O-linked glycosylation of GspB, a cell surface glycoprotein involved in platelet binding | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.0013 Score=73.74 Aligned_cols=120 Identities=13% Similarity=0.004 Sum_probs=83.8
Q ss_pred cEEEEEcCCCCch---hhhHHh---hC--CCCcEEEEeCCCCC-----------CCCCCeEECCCCCCHHHHHhhcCEEE
Q 003222 224 KLLILNFGGQPAG---WKLKEE---YL--PSGWKCLVCGASDS-----------QLPPNFIKLPKDAYTPDFMAASDCML 284 (838)
Q Consensus 224 ~~Vlvs~Gs~~~~---~~ll~~---l~--~~~~~~vv~G~~~~-----------~lp~nv~~~~~~~~~pdlLa~adl~I 284 (838)
+..+++.|..... ..+++. +. .+++.++++|.... .++.+|.+.++.+.+.++|+.||++|
T Consensus 204 ~~~i~~vgrl~~~K~~~~li~a~~~l~~~~~~~~l~i~G~g~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~ad~~v 283 (372)
T cd04949 204 PHKIITVARLAPEKQLDQLIKAFAKVVKQVPDATLDIYGYGDEEEKLKELIEELGLEDYVFLKGYTRDLDEVYQKAQLSL 283 (372)
T ss_pred CCeEEEEEccCcccCHHHHHHHHHHHHHhCCCcEEEEEEeCchHHHHHHHHHHcCCcceEEEcCCCCCHHHHHhhhhEEE
Confidence 3456777776543 223332 22 25677777775542 14678998888888889999999999
Q ss_pred ecC----ChhhHHHHHHcCCcEEEEeCCCCCChHHHHHHHHHcCcEEEEecCCCChhhHHHHHHHHhhCC
Q 003222 285 GKI----GYGTVSEALAYKLPFVFVRRDYFNEEPFLRNMLEFYQGGVEMIRRDLLTGHWKPYLERAISLK 350 (838)
Q Consensus 285 t~g----G~~Tv~Eal~~GvP~l~iP~~~~~EQ~~Na~~l~~~G~g~~l~~~~~~~~~l~~~l~~ll~~~ 350 (838)
..+ ...++.||+++|+|+|+...... +...++....|.+++..+ .+.+.++|.++++++
T Consensus 284 ~~S~~Eg~~~~~lEAma~G~PvI~~~~~~g-----~~~~v~~~~~G~lv~~~d--~~~la~~i~~ll~~~ 346 (372)
T cd04949 284 LTSQSEGFGLSLMEALSHGLPVISYDVNYG-----PSEIIEDGENGYLVPKGD--IEALAEAIIELLNDP 346 (372)
T ss_pred ecccccccChHHHHHHhCCCCEEEecCCCC-----cHHHcccCCCceEeCCCc--HHHHHHHHHHHHcCH
Confidence 633 33589999999999999864321 234566667888887655 468899999998765
|
In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltra |
| >COG3890 ERG8 Phosphomevalonate kinase [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.00023 Score=73.41 Aligned_cols=92 Identities=20% Similarity=0.241 Sum_probs=64.6
Q ss_pred CCCCChHHHHHHHHH-HHHHHH-hCCCCCH-HHHHHHHHHHHhhhcC-CCCChhhHHHhhcCCCCeEEEEEecCCce---
Q 003222 643 GKGVSSSASVEVASM-SAIAAA-HGLNIHP-RDLALLCQKVENHIVG-APCGVMDQMASACGEANKLLAMVCQPAEL--- 715 (838)
Q Consensus 643 g~GLgSSAA~~va~~-~al~~l-~~~~l~~-~ela~~a~~~E~~~~G-~~~G~mDq~a~~~G~~~~~l~~d~~~~~~--- 715 (838)
..|||||||+.+.+. .++..+ .+-+++. .++-++||.+--.-.| .-|| -|-.++++|+ +++-.+.|...
T Consensus 107 KtGlGSSAa~~tsLt~~lfls~~~~~nvd~k~eIhklaqiAhc~aQggIGSG-fDiaaA~fGs---iiyrRF~p~li~~l 182 (337)
T COG3890 107 KTGLGSSAAVATSLTCGLFLSHANATNVDEKGEIHKLAQIAHCYAQGGIGSG-FDIAAAIFGS---IIYRRFEPGLIPKL 182 (337)
T ss_pred cCCCcchhHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhCCCCcc-chhhHhhhcc---eEEeecCcchhhhh
Confidence 589999999999888 344443 4556665 7889999987766665 5567 6999999999 35544544432
Q ss_pred --eeeeccCCCeEEEEEeCCCCCcCC
Q 003222 716 --LGVVEIPSHIRFWGIDSGIRHSVG 739 (838)
Q Consensus 716 --~~~v~~~~~~~~vi~~s~~~~~~~ 739 (838)
.+.+++. ++.++..+++..-++.
T Consensus 183 ~qig~~nfg-~y~LmmGd~a~gSeTv 207 (337)
T COG3890 183 RQIGAVNFG-DYYLMMGDQAIGSETV 207 (337)
T ss_pred HhhCccccc-CeeeeecccccCccch
Confidence 2334443 7788888888877654
|
|
| >COG1829 Predicted archaeal kinase (sugar kinase superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.0017 Score=67.67 Aligned_cols=119 Identities=24% Similarity=0.315 Sum_probs=84.7
Q ss_pred CCEEEEEEeCCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhhhcCCCCChhhHHHhhcCCCCeEEEEE
Q 003222 630 DSISMLVSSAVPEGKGVSSSASVEVASMSAIAAAHGLNIHPRDLALLCQKVENHIVGAPCGVMDQMASACGEANKLLAMV 709 (838)
Q Consensus 630 ~g~~i~i~s~iP~g~GLgSSAA~~va~~~al~~l~~~~l~~~ela~~a~~~E~~~~G~~~G~mDq~a~~~G~~~~~l~~d 709 (838)
.|..+.+.+++|.|+|+|-|+|...+.+.|++..++.+ .++.++.|+.+|-. .-+|+.|-.|..+|| +.+.
T Consensus 73 ~~~~v~~~~~~P~G~G~G~Sga~AL~~Ala~a~~~~~~--~~~a~~~AH~aEV~---~gtGLGDVvAq~~GG----lViR 143 (283)
T COG1829 73 DGVGVRIESPVPLGCGYGVSGAGALGTALALAEELGLG--EESAARIAHVAEVE---NGTGLGDVVAQYTGG----LVIR 143 (283)
T ss_pred cCcceEEEecCCCCcccchhHHHHHHHHHHHHhhcCCC--HHHHHHHHHHHHHH---cCCCchHHHHHhcCc----EEEE
Confidence 35778999999999999999999999999999999876 78899999999954 456889999999999 3344
Q ss_pred ecCC--ce--eeeeccCCCeEEEEEeCCCC--CcCCCCchhhHHHHHhcChHHHhcc
Q 003222 710 CQPA--EL--LGVVEIPSHIRFWGIDSGIR--HSVGGADYGSVRAGAFMGRKMIKST 760 (838)
Q Consensus 710 ~~~~--~~--~~~v~~~~~~~~vi~~s~~~--~~~~~~~y~~~r~~~~~g~~~l~~~ 760 (838)
.++. .+ .+.++.|. ++++...-+.- ++..+++- ++.-...|++.|.+.
T Consensus 144 ~~pG~Pg~~~vd~Ip~~~-~~V~~~~~g~l~T~~vi~~~~--~~~i~~~g~~~l~el 197 (283)
T COG1829 144 VKPGGPGEGEVDRIPVPG-LRVITISLGELSTKSVITDEV--VRKINEAGKRALAEL 197 (283)
T ss_pred ecCCCCCeEEEEEeecCC-ceEEEEEcccccHHHhhhhHH--HHHHHHHHHHHHHHH
Confidence 4433 22 24666654 66555443322 22333332 444556677777665
|
|
| >PLN02949 transferase, transferring glycosyl groups | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.032 Score=64.77 Aligned_cols=95 Identities=9% Similarity=-0.051 Sum_probs=62.7
Q ss_pred CCcEEEEeCCCC--C---------------CCCCCeEECCCCC--CHHHHHhhcCEEEec---CCh-hhHHHHHHcCCcE
Q 003222 246 SGWKCLVCGASD--S---------------QLPPNFIKLPKDA--YTPDFMAASDCMLGK---IGY-GTVSEALAYKLPF 302 (838)
Q Consensus 246 ~~~~~vv~G~~~--~---------------~lp~nv~~~~~~~--~~pdlLa~adl~It~---gG~-~Tv~Eal~~GvP~ 302 (838)
++++++++|... . .+.++|.++++.+ .++++|+.||++|-. -|+ .++.|||++|+|+
T Consensus 302 ~~~~LvIvG~~~~~~~~~~~~eL~~la~~l~L~~~V~f~g~v~~~el~~ll~~a~~~v~~s~~E~FGivvlEAMA~G~PV 381 (463)
T PLN02949 302 PRPKLQFVGSCRNKEDEERLQKLKDRAKELGLDGDVEFHKNVSYRDLVRLLGGAVAGLHSMIDEHFGISVVEYMAAGAVP 381 (463)
T ss_pred CCcEEEEEeCCCCcccHHHHHHHHHHHHHcCCCCcEEEeCCCCHHHHHHHHHhCcEEEeCCccCCCChHHHHHHHcCCcE
Confidence 467888887531 0 1467899888764 456899999999942 233 4799999999999
Q ss_pred EEEeCCCCCChHHHHHHHHH--cC-cEEEEecCCCChhhHHHHHHHHhhC
Q 003222 303 VFVRRDYFNEEPFLRNMLEF--YQ-GGVEMIRRDLLTGHWKPYLERAISL 349 (838)
Q Consensus 303 l~iP~~~~~EQ~~Na~~l~~--~G-~g~~l~~~~~~~~~l~~~l~~ll~~ 349 (838)
|+....+..+. .+.. .| .|...+ +++.+.++|.+++++
T Consensus 382 Ia~~~gGp~~e-----IV~~~~~g~tG~l~~----~~~~la~ai~~ll~~ 422 (463)
T PLN02949 382 IAHNSAGPKMD-----IVLDEDGQQTGFLAT----TVEEYADAILEVLRM 422 (463)
T ss_pred EEeCCCCCcce-----eeecCCCCcccccCC----CHHHHHHHHHHHHhC
Confidence 99875432211 1111 12 244332 467899999999874
|
|
| >COG5017 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.88 E-value=0.0087 Score=55.83 Aligned_cols=108 Identities=16% Similarity=0.143 Sum_probs=75.0
Q ss_pred EEEEcCCCCch-hhhHH-----hhCC--CCcEEEEeCCCCCCCC-CCeEECCCCC--CHHHHHhhcCEEEecCChhhHHH
Q 003222 226 LILNFGGQPAG-WKLKE-----EYLP--SGWKCLVCGASDSQLP-PNFIKLPKDA--YTPDFMAASDCMLGKIGYGTVSE 294 (838)
Q Consensus 226 Vlvs~Gs~~~~-~~ll~-----~l~~--~~~~~vv~G~~~~~lp-~nv~~~~~~~--~~pdlLa~adl~It~gG~~Tv~E 294 (838)
++|+.|+.-.+ ..+.. .+.. ....++-+|+... .| ...++++|.. .+..+...+.++|+|+|-||+.-
T Consensus 2 ifVTvGstf~~f~rlv~k~e~~el~~~i~e~lIvQyGn~d~-kpvagl~v~~F~~~~kiQsli~darIVISHaG~GSIL~ 80 (161)
T COG5017 2 IFVTVGSTFYPFNRLVLKIEVLELTELIQEELIVQYGNGDI-KPVAGLRVYGFDKEEKIQSLIHDARIVISHAGEGSILL 80 (161)
T ss_pred eEEEecCccchHHHHHhhHHHHHHHHHhhhheeeeecCCCc-ccccccEEEeechHHHHHHHhhcceEEEeccCcchHHH
Confidence 67888888543 11111 1111 2234556787533 34 3457777753 34577788999999999999999
Q ss_pred HHHcCCcEEEEeCCC-CC-----ChHHHHHHHHHcCcEEEEecCCC
Q 003222 295 ALAYKLPFVFVRRDY-FN-----EEPFLRNMLEFYQGGVEMIRRDL 334 (838)
Q Consensus 295 al~~GvP~l~iP~~~-~~-----EQ~~Na~~l~~~G~g~~l~~~~~ 334 (838)
++..++|.|++|+.. ++ .|...|..|.+.++-+..++.+.
T Consensus 81 ~~rl~kplIv~pr~s~y~elvDdHQvela~klae~~~vv~~spte~ 126 (161)
T COG5017 81 LLRLDKPLIVVPRSSQYQELVDDHQVELALKLAEINYVVACSPTEL 126 (161)
T ss_pred HhhcCCcEEEEECchhHHHhhhhHHHHHHHHHHhcCceEEEcCCch
Confidence 999999999999753 22 25678999999999998886553
|
|
| >KOG2833 consensus Mevalonate pyrophosphate decarboxylase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.74 E-value=0.0056 Score=64.55 Aligned_cols=62 Identities=26% Similarity=0.382 Sum_probs=53.8
Q ss_pred CEEEEEEeCCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhhhcCCCCChhhHHHhhcCCC
Q 003222 631 SISMLVSSAVPEGKGVSSSASVEVASMSAIAAAHGLNIHPRDLALLCQKVENHIVGAPCGVMDQMASACGEA 702 (838)
Q Consensus 631 g~~i~i~s~iP~g~GLgSSAA~~va~~~al~~l~~~~l~~~ela~~a~~~E~~~~G~~~G~mDq~a~~~G~~ 702 (838)
-+.|.-.+|.|-.+||.||||=-.|++.||+.+++++.+++++-.+|... .|..|- ++|||.
T Consensus 105 ~lHI~S~nNFPtAAGLASSAAG~Aalv~alarly~l~~~~~els~iAR~G----SGSACR------Sl~GG~ 166 (395)
T KOG2833|consen 105 KLHIASVNNFPTAAGLASSAAGFAALVLALARLYGLDDSPEELSRIARQG----SGSACR------SLYGGF 166 (395)
T ss_pred eEEEEecCCCcchhhhhhhhhhHHHHHHHHHHHhCCCCCHHHHHHHHhcc----Cchhhh------hhhcce
Confidence 46677778999999999999999999999999999999999999988853 366664 899995
|
|
| >PF13692 Glyco_trans_1_4: Glycosyl transferases group 1; PDB: 3OY2_A 3OY7_B 2Q6V_A 2HY7_A 3CV3_A 3CUY_A | Back alignment and domain information |
|---|
Probab=96.65 E-value=0.0036 Score=59.21 Aligned_cols=115 Identities=21% Similarity=0.150 Sum_probs=67.2
Q ss_pred EEEEEcCCCCch---hhhHH-h---hC--CCCcEEEEeCCCCCC---C-CCCeEECCCCCCHHHHHhhcCEEEecC----
Q 003222 225 LLILNFGGQPAG---WKLKE-E---YL--PSGWKCLVCGASDSQ---L-PPNFIKLPKDAYTPDFMAASDCMLGKI---- 287 (838)
Q Consensus 225 ~Vlvs~Gs~~~~---~~ll~-~---l~--~~~~~~vv~G~~~~~---l-p~nv~~~~~~~~~pdlLa~adl~It~g---- 287 (838)
++++++|+.... ..+++ . +. .+++.+.++|...+. + .+||++.++.+.++++|+.||++|.-.
T Consensus 3 ~~i~~~g~~~~~k~~~~li~~~~~~l~~~~p~~~l~i~G~~~~~l~~~~~~~v~~~g~~~e~~~~l~~~dv~l~p~~~~~ 82 (135)
T PF13692_consen 3 LYIGYLGRIRPDKGLEELIEAALERLKEKHPDIELIIIGNGPDELKRLRRPNVRFHGFVEELPEILAAADVGLIPSRFNE 82 (135)
T ss_dssp EEEE--S-SSGGGTHHHHHH-HHHHHHHHSTTEEEEEECESS-HHCCHHHCTEEEE-S-HHHHHHHHC-SEEEE-BSS-S
T ss_pred ccccccccccccccccchhhhHHHHHHHHCcCEEEEEEeCCHHHHHHhcCCCEEEcCCHHHHHHHHHhCCEEEEEeeCCC
Confidence 355667766532 22333 2 22 256778888875432 2 569999888766778999999999632
Q ss_pred C-hhhHHHHHHcCCcEEEEeCCCCCChHHHHHHHHHcCcEEEEecCCCChhhHHHHHHHHhhC
Q 003222 288 G-YGTVSEALAYKLPFVFVRRDYFNEEPFLRNMLEFYQGGVEMIRRDLLTGHWKPYLERAISL 349 (838)
Q Consensus 288 G-~~Tv~Eal~~GvP~l~iP~~~~~EQ~~Na~~l~~~G~g~~l~~~~~~~~~l~~~l~~ll~~ 349 (838)
| .+++.|++++|+|+|+.+. ......+..+.+..+ .. +++.|.++|.++++|
T Consensus 83 ~~~~k~~e~~~~G~pvi~~~~-------~~~~~~~~~~~~~~~-~~--~~~~l~~~i~~l~~d 135 (135)
T PF13692_consen 83 GFPNKLLEAMAAGKPVIASDN-------GAEGIVEEDGCGVLV-AN--DPEELAEAIERLLND 135 (135)
T ss_dssp CC-HHHHHHHCTT--EEEEHH-------HCHCHS---SEEEE--TT---HHHHHHHHHHHHH-
T ss_pred cCcHHHHHHHHhCCCEEECCc-------chhhheeecCCeEEE-CC--CHHHHHHHHHHHhcC
Confidence 3 3689999999999999873 112345557778777 33 468999999998864
|
|
| >TIGR02918 accessory Sec system glycosylation protein GtfA | Back alignment and domain information |
|---|
Probab=96.50 E-value=0.016 Score=67.96 Aligned_cols=120 Identities=10% Similarity=-0.035 Sum_probs=80.5
Q ss_pred CcEEEEEcCCCCch---hhhHHhh---C--CCCcEEEEeCCCCCC-----------CCCCeEECCCCCCHHHHHhhcCEE
Q 003222 223 VKLLILNFGGQPAG---WKLKEEY---L--PSGWKCLVCGASDSQ-----------LPPNFIKLPKDAYTPDFMAASDCM 283 (838)
Q Consensus 223 ~~~Vlvs~Gs~~~~---~~ll~~l---~--~~~~~~vv~G~~~~~-----------lp~nv~~~~~~~~~pdlLa~adl~ 283 (838)
++.++++.|..... ..+++++ . .+++.+.++|..... +..+|...|+. .++++++.+|++
T Consensus 318 ~~~~il~vGrl~~~Kg~~~li~A~~~l~~~~p~~~l~i~G~G~~~~~l~~~i~~~~l~~~V~f~G~~-~~~~~~~~adv~ 396 (500)
T TIGR02918 318 KPFSIITASRLAKEKHIDWLVKAVVKAKKSVPELTFDIYGEGGEKQKLQKIINENQAQDYIHLKGHR-NLSEVYKDYELY 396 (500)
T ss_pred CCeEEEEEeccccccCHHHHHHHHHHHHhhCCCeEEEEEECchhHHHHHHHHHHcCCCCeEEEcCCC-CHHHHHHhCCEE
Confidence 34677888887653 2344432 1 257778888865421 35678888976 588999999999
Q ss_pred EecC---C-hhhHHHHHHcCCcEEEEeCCCCCChHHHHHHHHHcCcEEEEecCC--CC----hhhHHHHHHHHhh
Q 003222 284 LGKI---G-YGTVSEALAYKLPFVFVRRDYFNEEPFLRNMLEFYQGGVEMIRRD--LL----TGHWKPYLERAIS 348 (838)
Q Consensus 284 It~g---G-~~Tv~Eal~~GvP~l~iP~~~~~EQ~~Na~~l~~~G~g~~l~~~~--~~----~~~l~~~l~~ll~ 348 (838)
|..+ | ..+++||+++|+|+|+...... +.+.++....|.+++..+ -. .+.+.++|.++++
T Consensus 397 v~pS~~Egfgl~~lEAma~G~PVI~~dv~~G-----~~eiI~~g~nG~lv~~~~~~~d~~~~~~~la~~I~~ll~ 466 (500)
T TIGR02918 397 LSASTSEGFGLTLMEAVGSGLGMIGFDVNYG-----NPTFIEDNKNGYLIPIDEEEDDEDQIITALAEKIVEYFN 466 (500)
T ss_pred EEcCccccccHHHHHHHHhCCCEEEecCCCC-----CHHHccCCCCEEEEeCCccccchhHHHHHHHHHHHHHhC
Confidence 9633 3 3589999999999999874311 234455556788886321 11 4678888888874
|
Members of this protein family are found only in Gram-positive bacteria of the Firmicutes lineage, including several species of Staphylococcus, Streptococcus, and Lactobacillus. Members are associated with glycosylation of serine-rich glycoproteins exported by the accessory Sec system. |
| >PHA01633 putative glycosyl transferase group 1 | Back alignment and domain information |
|---|
Probab=96.42 E-value=0.012 Score=65.04 Aligned_cols=138 Identities=12% Similarity=0.045 Sum_probs=82.3
Q ss_pred HHHHHHhCCCCCCcEEEEEcCCCCch---hhhHHh---hCC--CC----cEEEEeCCCCC---CCCCCeEECCCC-----
Q 003222 211 KEVRKELGIEDDVKLLILNFGGQPAG---WKLKEE---YLP--SG----WKCLVCGASDS---QLPPNFIKLPKD----- 270 (838)
Q Consensus 211 ~~~r~~l~~~~~~~~Vlvs~Gs~~~~---~~ll~~---l~~--~~----~~~vv~G~~~~---~lp~nv~~~~~~----- 270 (838)
.++++.++.......++++.|..... ..++++ +.. ++ +.+++.|.... .++.+|+++++.
T Consensus 135 ~~~r~~~~~~~~~~~~i~~vGRl~~~KG~~~LI~A~~~L~~~~p~~~~~i~l~ivG~~~~~~l~l~~~V~f~g~~G~~~~ 214 (335)
T PHA01633 135 PQLKQKLDKDFPDTIKFGIVSGLTKRKNMDLMLQVFNELNTKYPDIAKKIHFFVISHKQFTQLEVPANVHFVAEFGHNSR 214 (335)
T ss_pred HHHHHHhCcCCCCCeEEEEEeCCccccCHHHHHHHHHHHHHhCCCccccEEEEEEcHHHHHHcCCCCcEEEEecCCCCCH
Confidence 35666666432234566667776542 223332 221 22 35566664321 267889887432
Q ss_pred CCHHHHHhhcCEEEecC---C-hhhHHHHHHcCCcEEEEeCCCCCC----h------HHHHHHHH--HcCcEEEEecCCC
Q 003222 271 AYTPDFMAASDCMLGKI---G-YGTVSEALAYKLPFVFVRRDYFNE----E------PFLRNMLE--FYQGGVEMIRRDL 334 (838)
Q Consensus 271 ~~~pdlLa~adl~It~g---G-~~Tv~Eal~~GvP~l~iP~~~~~E----Q------~~Na~~l~--~~G~g~~l~~~~~ 334 (838)
++++++++++|+||.-+ | ..++.||+++|+|+|+...+...| + ..++.... ..|.|..++. .
T Consensus 215 ~dl~~~y~~aDifV~PS~~EgfGlvlLEAMA~G~PVVas~~~~l~Ei~g~~~~~Li~~~~v~~~~~~~~g~g~~~~~--~ 292 (335)
T PHA01633 215 EYIFAFYGAMDFTIVPSGTEGFGMPVLESMAMGTPVIHQLMPPLDEFTSWQWNLLIKSSKVEEYYDKEHGQKWKIHK--F 292 (335)
T ss_pred HHHHHHHHhCCEEEECCccccCCHHHHHHHHcCCCEEEccCCCceeecCCccceeeCCCCHHHhcCcccCceeeecC--C
Confidence 34678999999999632 3 358999999999999975543333 1 11222222 3567766653 4
Q ss_pred ChhhHHHHHHHHhhCC
Q 003222 335 LTGHWKPYLERAISLK 350 (838)
Q Consensus 335 ~~~~l~~~l~~ll~~~ 350 (838)
+++.+..+|.+++...
T Consensus 293 d~~~la~ai~~~~~~~ 308 (335)
T PHA01633 293 QIEDMANAIILAFELQ 308 (335)
T ss_pred CHHHHHHHHHHHHhcc
Confidence 4678899998886543
|
|
| >PRK14098 glycogen synthase; Provisional | Back alignment and domain information |
|---|
Probab=96.30 E-value=0.026 Score=66.06 Aligned_cols=135 Identities=16% Similarity=0.037 Sum_probs=85.5
Q ss_pred hHHHHHHhCCCCC-CcEEEEEcCCCCch--hh-hHH---hhCCCCcEEEEeCCCCC-----------CCCCCeEECCCCC
Q 003222 210 RKEVRKELGIEDD-VKLLILNFGGQPAG--WK-LKE---EYLPSGWKCLVCGASDS-----------QLPPNFIKLPKDA 271 (838)
Q Consensus 210 ~~~~r~~l~~~~~-~~~Vlvs~Gs~~~~--~~-ll~---~l~~~~~~~vv~G~~~~-----------~lp~nv~~~~~~~ 271 (838)
+..+++.+|++.+ ...++++.|..... .+ +++ .+...+++++++|.... ..+.+|.+.++.+
T Consensus 292 k~~l~~~lgl~~~~~~~~i~~vgRl~~~KG~d~li~a~~~l~~~~~~lvivG~G~~~~~~~l~~l~~~~~~~V~~~g~~~ 371 (489)
T PRK14098 292 KKALLEEVGLPFDEETPLVGVIINFDDFQGAELLAESLEKLVELDIQLVICGSGDKEYEKRFQDFAEEHPEQVSVQTEFT 371 (489)
T ss_pred HHHHHHHhCCCCccCCCEEEEeccccccCcHHHHHHHHHHHHhcCcEEEEEeCCCHHHHHHHHHHHHHCCCCEEEEEecC
Confidence 3466778888632 33466777776642 22 222 33345788888886542 1467888776544
Q ss_pred C--HHHHHhhcCEEEecC---C-hhhHHHHHHcCCcEEEEeCCCCCChHHHHHHHHHcCcEEEEecCCCChhhHHHHHHH
Q 003222 272 Y--TPDFMAASDCMLGKI---G-YGTVSEALAYKLPFVFVRRDYFNEEPFLRNMLEFYQGGVEMIRRDLLTGHWKPYLER 345 (838)
Q Consensus 272 ~--~pdlLa~adl~It~g---G-~~Tv~Eal~~GvP~l~iP~~~~~EQ~~Na~~l~~~G~g~~l~~~~~~~~~l~~~l~~ 345 (838)
. ++.+|+.||+|+..+ | ..+.+|||++|+|.|+....+..|... +..+..+.|..++..+ ++.+.++|.+
T Consensus 372 ~~~~~~~~a~aDi~l~PS~~E~~Gl~~lEAma~G~ppVv~~~GGl~d~v~--~~~~~~~~G~l~~~~d--~~~la~ai~~ 447 (489)
T PRK14098 372 DAFFHLAIAGLDMLLMPGKIESCGMLQMFAMSYGTIPVAYAGGGIVETIE--EVSEDKGSGFIFHDYT--PEALVAKLGE 447 (489)
T ss_pred HHHHHHHHHhCCEEEeCCCCCCchHHHHHHHhCCCCeEEecCCCCceeee--cCCCCCCceeEeCCCC--HHHHHHHHHH
Confidence 2 458999999999633 1 258899999999999876544444310 1111246788887655 5688888887
Q ss_pred Hhh
Q 003222 346 AIS 348 (838)
Q Consensus 346 ll~ 348 (838)
++.
T Consensus 448 ~l~ 450 (489)
T PRK14098 448 ALA 450 (489)
T ss_pred HHH
Confidence 663
|
|
| >cd04946 GT1_AmsK_like This family is most closely related to the GT1 family of glycosyltransferases | Back alignment and domain information |
|---|
Probab=96.10 E-value=0.028 Score=64.28 Aligned_cols=122 Identities=11% Similarity=0.026 Sum_probs=77.3
Q ss_pred CCcEEEEEcCCCCch---hhhHHh---hCC--C--CcEEEEeCCCCC---------C--CCCCeEECCCCC--CHHHHHh
Q 003222 222 DVKLLILNFGGQPAG---WKLKEE---YLP--S--GWKCLVCGASDS---------Q--LPPNFIKLPKDA--YTPDFMA 278 (838)
Q Consensus 222 ~~~~Vlvs~Gs~~~~---~~ll~~---l~~--~--~~~~vv~G~~~~---------~--lp~nv~~~~~~~--~~pdlLa 278 (838)
+.+..+++.|..... ..++++ +.. + +..+++.|.... . ...+|.++|+++ .++.+++
T Consensus 228 ~~~~~il~~Grl~~~Kg~~~li~a~~~l~~~~p~~~l~~~iiG~g~~~~~l~~~~~~~~~~~~V~f~G~v~~~e~~~~~~ 307 (407)
T cd04946 228 DDTLRIVSCSYLVPVKRVDLIIKALAALAKARPSIKIKWTHIGGGPLEDTLKELAESKPENISVNFTGELSNSEVYKLYK 307 (407)
T ss_pred CCCEEEEEeeccccccCHHHHHHHHHHHHHhCCCceEEEEEEeCchHHHHHHHHHHhcCCCceEEEecCCChHHHHHHHh
Confidence 345667888877653 223332 221 2 334555665432 1 234688888876 3457775
Q ss_pred h--cCEEEecC---C-hhhHHHHHHcCCcEEEEeCCCCCChHHHHHHHHHcCcEEEEecCCCChhhHHHHHHHHhhCC
Q 003222 279 A--SDCMLGKI---G-YGTVSEALAYKLPFVFVRRDYFNEEPFLRNMLEFYQGGVEMIRRDLLTGHWKPYLERAISLK 350 (838)
Q Consensus 279 ~--adl~It~g---G-~~Tv~Eal~~GvP~l~iP~~~~~EQ~~Na~~l~~~G~g~~l~~~~~~~~~l~~~l~~ll~~~ 350 (838)
. +|+||..+ | .++++|||++|+|+|+....+ ..+.+...+.|..+...+ +++.+.++|.++++++
T Consensus 308 ~~~~~v~v~~S~~Eg~p~~llEAma~G~PVIas~vgg------~~e~i~~~~~G~l~~~~~-~~~~la~~I~~ll~~~ 378 (407)
T cd04946 308 ENPVDVFVNLSESEGLPVSIMEAMSFGIPVIATNVGG------TPEIVDNGGNGLLLSKDP-TPNELVSSLSKFIDNE 378 (407)
T ss_pred hcCCCEEEeCCccccccHHHHHHHHcCCCEEeCCCCC------cHHHhcCCCcEEEeCCCC-CHHHHHHHHHHHHhCH
Confidence 4 78888533 2 358999999999999976433 234455555788876532 3578999999998765
|
AmsK is involved in the biosynthesis of amylovoran, which functions as a virulence factor. It functions as a glycosyl transferase which transfers galactose from UDP-galactose to a lipid-linked amylovoran-subunit precursor. The members of this family are found mainly in bacteria and Archaea. |
| >PRK09814 beta-1,6-galactofuranosyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=96.03 E-value=0.31 Score=54.09 Aligned_cols=110 Identities=14% Similarity=0.056 Sum_probs=69.2
Q ss_pred EEEEEcCCCCchhhhHHhhCCCCcEEEEeCCCCC--CCCCCeEECCCCC--CHHHHHhhcCEEEecC--------Ch---
Q 003222 225 LLILNFGGQPAGWKLKEEYLPSGWKCLVCGASDS--QLPPNFIKLPKDA--YTPDFMAASDCMLGKI--------GY--- 289 (838)
Q Consensus 225 ~Vlvs~Gs~~~~~~ll~~l~~~~~~~vv~G~~~~--~lp~nv~~~~~~~--~~pdlLa~adl~It~g--------G~--- 289 (838)
.+++..|+.+.. ..+.. ..+++.++++|.... ...+||++.|+.+ .++.+|+..-.+|.-. .+
T Consensus 170 ~~i~yaG~l~k~-~~l~~-~~~~~~l~i~G~g~~~~~~~~~V~f~G~~~~eel~~~l~~~~gLv~~~~~~~~~~~~y~~~ 247 (333)
T PRK09814 170 KKINFAGNLEKS-PFLKN-WSQGIKLTVFGPNPEDLENSANISYKGWFDPEELPNELSKGFGLVWDGDTNDGEYGEYYKY 247 (333)
T ss_pred ceEEEecChhhc-hHHHh-cCCCCeEEEECCCccccccCCCeEEecCCCHHHHHHHHhcCcCeEEcCCCCCccchhhhhc
Confidence 356667877742 22222 224577888887653 2567999888764 3456666522222211 11
Q ss_pred ---hhHHHHHHcCCcEEEEeCCCCCChHHHHHHHHHcCcEEEEecCCCChhhHHHHHHHH
Q 003222 290 ---GTVSEALAYKLPFVFVRRDYFNEEPFLRNMLEFYQGGVEMIRRDLLTGHWKPYLERA 346 (838)
Q Consensus 290 ---~Tv~Eal~~GvP~l~iP~~~~~EQ~~Na~~l~~~G~g~~l~~~~~~~~~l~~~l~~l 346 (838)
+-+.|.|++|+|+|+.+. ...++.+++.+.|+.++ + .+.+.++|.++
T Consensus 248 ~~P~K~~~ymA~G~PVI~~~~------~~~~~~V~~~~~G~~v~--~--~~el~~~l~~~ 297 (333)
T PRK09814 248 NNPHKLSLYLAAGLPVIVWSK------AAIADFIVENGLGFVVD--S--LEELPEIIDNI 297 (333)
T ss_pred cchHHHHHHHHCCCCEEECCC------ccHHHHHHhCCceEEeC--C--HHHHHHHHHhc
Confidence 237789999999999652 35678899999999987 2 24566666654
|
|
| >COG1907 Predicted archaeal sugar kinases [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.99 E-value=0.027 Score=59.31 Aligned_cols=98 Identities=23% Similarity=0.387 Sum_probs=75.2
Q ss_pred CCEEEEEEeCCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhhhcCCCCChhhHHHhhcCCCCeEEEEE
Q 003222 630 DSISMLVSSAVPEGKGVSSSASVEVASMSAIAAAHGLNIHPRDLALLCQKVENHIVGAPCGVMDQMASACGEANKLLAMV 709 (838)
Q Consensus 630 ~g~~i~i~s~iP~g~GLgSSAA~~va~~~al~~l~~~~l~~~ela~~a~~~E~~~~G~~~G~mDq~a~~~G~~~~~l~~d 709 (838)
.|++|.|.+.+|.-.||||-..+..+++.++++++|++++-+|||....+ |--||+ --++--+|| ..+|
T Consensus 70 ~gv~I~I~~~~P~HvGLGS~TQlaLa~a~ai~~i~gl~~~~~elA~~vgR------G~tSgi-Gv~afe~GG----FIVD 138 (312)
T COG1907 70 EGVKIEIRSDIPAHVGLGSTTQLALAVASAILEIYGLELSIRELAFAVGR------GGTSGI-GVYAFEYGG----FIVD 138 (312)
T ss_pred CceEEEEEecCchhcCCChHHHHHHHHHHHHHHHhcCCCCHHHHHHHHcc------CCccce-eEEEEEECC----EEEE
Confidence 68999999999999999999999999999999999999999999877654 445663 345566777 3445
Q ss_pred ec------CC--c-eeeeeccCCCeEEEEEeCCCCCcC
Q 003222 710 CQ------PA--E-LLGVVEIPSHIRFWGIDSGIRHSV 738 (838)
Q Consensus 710 ~~------~~--~-~~~~v~~~~~~~~vi~~s~~~~~~ 738 (838)
.. |. . .+-..++|.++.|+++=-..+|..
T Consensus 139 GGh~~~f~ps~~sP~I~R~dfPedW~~VlaIP~~~rg~ 176 (312)
T COG1907 139 GGHSFGFLPSSASPLIFRLDFPEDWRFVLAIPEVERGV 176 (312)
T ss_pred CCcccCcccCCCCceeeeecCCCceEEEEEecCCCccc
Confidence 21 11 1 234567889999999877766643
|
|
| >PF06258 Mito_fiss_Elm1: Mitochondrial fission ELM1; InterPro: IPR009367 This family consists of several hypothetical eukaryotic and prokaryotic proteins | Back alignment and domain information |
|---|
Probab=95.80 E-value=0.83 Score=50.16 Aligned_cols=97 Identities=16% Similarity=0.047 Sum_probs=61.0
Q ss_pred CCeEECCCC--CCHHHHHhhcCEEEecCCh-hhHHHHHHcCCcEEEEeCCCCCChH-HHHHHHHHcCcEEEEecCCCChh
Q 003222 262 PNFIKLPKD--AYTPDFMAASDCMLGKIGY-GTVSEALAYKLPFVFVRRDYFNEEP-FLRNMLEFYQGGVEMIRRDLLTG 337 (838)
Q Consensus 262 ~nv~~~~~~--~~~pdlLa~adl~It~gG~-~Tv~Eal~~GvP~l~iP~~~~~EQ~-~Na~~l~~~G~g~~l~~~~~~~~ 337 (838)
+.+.+.+.. .|..++|+.||.+|..+.. +.++||++.|+|+.+++.+.....+ .-.+.|++.|+...++...-
T Consensus 209 ~~~~~~~~~~~nPy~~~La~ad~i~VT~DSvSMvsEA~~tG~pV~v~~l~~~~~r~~r~~~~L~~~g~~r~~~~~~~--- 285 (311)
T PF06258_consen 209 PGVYIWDGTGENPYLGFLAAADAIVVTEDSVSMVSEAAATGKPVYVLPLPGRSGRFRRFHQSLEERGAVRPFTGWRD--- 285 (311)
T ss_pred CceEEecCCCCCcHHHHHHhCCEEEEcCccHHHHHHHHHcCCCEEEecCCCcchHHHHHHHHHHHCCCEEECCCccc---
Confidence 445444332 3567999999999876654 4588999999999999976422211 23467778887766553211
Q ss_pred hHHHHHHHHhhCCCCccCCCCHHHHHHHHHHHHh
Q 003222 338 HWKPYLERAISLKPCYEGGINGGEVAAHILQETA 371 (838)
Q Consensus 338 ~l~~~l~~ll~~~~~~~~~~~g~~~~a~~i~~~~ 371 (838)
+. . ...| ...+-+.++|++|.+.+
T Consensus 286 -~~----~----~~~~-~pl~et~r~A~~i~~r~ 309 (311)
T PF06258_consen 286 -LE----Q----WTPY-EPLDETDRVAAEIRERL 309 (311)
T ss_pred -cc----c----cccC-CCccHHHHHHHHHHHHh
Confidence 11 1 1111 25577888888887653
|
The function of this family is unknown. |
| >COG1519 KdtA 3-deoxy-D-manno-octulosonic-acid transferase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=95.69 E-value=1.2 Score=50.04 Aligned_cols=81 Identities=12% Similarity=0.028 Sum_probs=57.7
Q ss_pred CeEECCCCCCHHHHHhhcCEEEe------cCChhhHHHHHHcCCcEEEEeCCCCCChHHHHHHHHHcCcEEEEecCCCCh
Q 003222 263 NFIKLPKDAYTPDFMAASDCMLG------KIGYGTVSEALAYKLPFVFVRRDYFNEEPFLRNMLEFYQGGVEMIRRDLLT 336 (838)
Q Consensus 263 nv~~~~~~~~~pdlLa~adl~It------~gG~~Tv~Eal~~GvP~l~iP~~~~~EQ~~Na~~l~~~G~g~~l~~~~~~~ 336 (838)
+|.+.+-...|-.++..+|+.+- .|| --..|++++|+|+|+=| ..+.|...++++++.|+++.++. .
T Consensus 301 dV~l~DtmGEL~l~y~~adiAFVGGSlv~~GG-HN~LEpa~~~~pvi~Gp--~~~Nf~ei~~~l~~~ga~~~v~~----~ 373 (419)
T COG1519 301 DVLLGDTMGELGLLYGIADIAFVGGSLVPIGG-HNPLEPAAFGTPVIFGP--YTFNFSDIAERLLQAGAGLQVED----A 373 (419)
T ss_pred cEEEEecHhHHHHHHhhccEEEECCcccCCCC-CChhhHHHcCCCEEeCC--ccccHHHHHHHHHhcCCeEEECC----H
Confidence 45543322334467778887663 344 45889999999999988 45567789999999999999975 2
Q ss_pred hhHHHHHHHHhhCC
Q 003222 337 GHWKPYLERAISLK 350 (838)
Q Consensus 337 ~~l~~~l~~ll~~~ 350 (838)
+.+...++.++.++
T Consensus 374 ~~l~~~v~~l~~~~ 387 (419)
T COG1519 374 DLLAKAVELLLADE 387 (419)
T ss_pred HHHHHHHHHhcCCH
Confidence 45666676666543
|
|
| >KOG1537 consensus Homoserine kinase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.16 E-value=0.028 Score=57.88 Aligned_cols=114 Identities=18% Similarity=0.312 Sum_probs=72.6
Q ss_pred CCEEEEEEeCCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhh-------hcCCCCC------------
Q 003222 630 DSISMLVSSAVPEGKGVSSSASVEVASMSAIAAAHGLNIHPRDLALLCQKVENH-------IVGAPCG------------ 690 (838)
Q Consensus 630 ~g~~i~i~s~iP~g~GLgSSAA~~va~~~al~~l~~~~l~~~ela~~a~~~E~~-------~~G~~~G------------ 690 (838)
.+-.+.+...||.|+|+|||++..++-+...++...+.+++-....++...|++ .+|--||
T Consensus 93 ~~Tk~hvtNPiplgrGigssgta~~aGv~l~ne~a~LGlsk~~mldy~lmierhpdn~~a~mmGgf~GSflr~l~e~E~~ 172 (355)
T KOG1537|consen 93 ITTKKHVTNPIPLGRGIGSSGTAKMAGVRLVNESADLGLSKGSMLDYSLMIERHPDNAVAEMMGGFLGSFLRALLESEAK 172 (355)
T ss_pred cceeeeecCCccccccccchhhhhhhhheecchHhhcCCccccchhHHHHHhhChHHHHHHHHhhHHHHHHHHhCHhhhh
Confidence 456788889999999999999999999999888888888777666666666653 1111111
Q ss_pred ----hhhHH-HhhcCCCCeEEEEEecCCceeeeeccC--CCeEEEEE------eCCCCCcCCCCchhh
Q 003222 691 ----VMDQM-ASACGEANKLLAMVCQPAELLGVVEIP--SHIRFWGI------DSGIRHSVGGADYGS 745 (838)
Q Consensus 691 ----~mDq~-a~~~G~~~~~l~~d~~~~~~~~~v~~~--~~~~~vi~------~s~~~~~~~~~~y~~ 745 (838)
-.|+. ...+||. .+....-|.+...++.+| .++.++++ .|...|.....+|..
T Consensus 173 ~~~~~ad~ilp~~~gg~--~li~~lpP~dlg~~~r~pw~~~lk~i~viP~Fel~T~k~R~vLPt~yp~ 238 (355)
T KOG1537|consen 173 VSGYHADNILPAIMGGF--VLIRNLPPLDLGKPLRFPWDKDLKFILVIPDFELPTKKMRAVLPTEYPM 238 (355)
T ss_pred hcCCCHHHhcccccCCe--eeecCCCcccccccccCCCCccceEEEEeccccccchhhhhhcCccccc
Confidence 13444 3556663 222222333333345555 45666654 477778777766543
|
|
| >PHA01630 putative group 1 glycosyl transferase | Back alignment and domain information |
|---|
Probab=94.20 E-value=0.29 Score=54.31 Aligned_cols=68 Identities=16% Similarity=0.002 Sum_probs=42.4
Q ss_pred CCcEEEEeCCCCCCC-CCCeE-ECCCC--CCHHHHHhhcCEEEec----CChhhHHHHHHcCCcEEEEeCCCCCCh
Q 003222 246 SGWKCLVCGASDSQL-PPNFI-KLPKD--AYTPDFMAASDCMLGK----IGYGTVSEALAYKLPFVFVRRDYFNEE 313 (838)
Q Consensus 246 ~~~~~vv~G~~~~~l-p~nv~-~~~~~--~~~pdlLa~adl~It~----gG~~Tv~Eal~~GvP~l~iP~~~~~EQ 313 (838)
+++.+++.|...... -.++. +.++. +.++++|+.||+||.- +...++.|||++|+|+|+....+..|.
T Consensus 172 ~~~~llivG~~~~~~~l~~~~~~~~~v~~~~l~~~y~~aDv~v~pS~~E~fgl~~lEAMA~G~PVIas~~gg~~E~ 247 (331)
T PHA01630 172 YDFYFLIKSSNMLDPRLFGLNGVKTPLPDDDIYSLFAGCDILFYPVRGGAFEIPVIEALALGLDVVVTEKGAWSEW 247 (331)
T ss_pred CCEEEEEEeCcccchhhccccceeccCCHHHHHHHHHhCCEEEECCccccCChHHHHHHHcCCCEEEeCCCCchhh
Confidence 466777778543221 01211 11112 3566899999999952 224589999999999999885444443
|
|
| >KOG4519 consensus Phosphomevalonate kinase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=93.69 E-value=1.3 Score=47.51 Aligned_cols=60 Identities=22% Similarity=0.226 Sum_probs=41.3
Q ss_pred CCCCChHHHHHHHHHHHHHHHhCC----------CCCH---HHHHHHHHHHHhhhcCCCCChhhHHHhhcCCC
Q 003222 643 GKGVSSSASVEVASMSAIAAAHGL----------NIHP---RDLALLCQKVENHIVGAPCGVMDQMASACGEA 702 (838)
Q Consensus 643 g~GLgSSAA~~va~~~al~~l~~~----------~l~~---~ela~~a~~~E~~~~G~~~G~mDq~a~~~G~~ 702 (838)
.-|||||||+..++..++...+|. +++. .-+-.+||.+--...|+-...-|-.++++|..
T Consensus 152 KTGLGSSAam~T~lv~~ll~sl~~~~~d~~~k~~k~d~s~~~viHnlAQ~aHC~AQGKvGSGFDV~aA~yGS~ 224 (459)
T KOG4519|consen 152 KTGLGSSAAMTTALVAALLHSLGVVDLDDPCKEGKFDCSDLDVIHNLAQTAHCLAQGKVGSGFDVSAAVYGSQ 224 (459)
T ss_pred ccCccchHHHHHHHHHHHHHhhcceecCCCccccccCchHHHHHHHHHHHHHHHhcCCccCCcceehhhccce
Confidence 479999999999999777766642 1332 23345666655555675533369999999985
|
|
| >COG2099 CobK Precorrin-6x reductase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=93.62 E-value=2.4 Score=44.44 Aligned_cols=146 Identities=18% Similarity=0.218 Sum_probs=79.9
Q ss_pred HHHHhcCCCcEEE-ECCCchH------HHHHHHhCCcEEEEecCchhHHHHhhhhhcccchHHHHHHHHhhccccceEEe
Q 003222 111 VEWLNSIKADLVV-SDVVPVA------CRAAADAGIRSVCVTNFSWDFIYAEYVMAAGHHHRSIVWQIAEDYSHCEFLIR 183 (838)
Q Consensus 111 ~~~L~~~kPDlVV-sD~~~~~------~~aA~~lgIP~V~is~~~~~~i~~~~~~~~~~~~~~i~~~l~~~y~~~d~ll~ 183 (838)
.++|++.+.|+|| ..|+|.+ ..+|+.+|||++.+..-.|... .+
T Consensus 59 ~~~l~e~~i~llIDATHPyAa~iS~Na~~aake~gipy~r~eRP~~~~~-------------------------gd---- 109 (257)
T COG2099 59 AAFLREEGIDLLIDATHPYAARISQNAARAAKETGIPYLRLERPPWAPN-------------------------GD---- 109 (257)
T ss_pred HHHHHHcCCCEEEECCChHHHHHHHHHHHHHHHhCCcEEEEECCccccC-------------------------CC----
Confidence 6678999999999 5566653 4577889999998755444210 00
Q ss_pred cCCCCCCCCCCceeecCcccccCCcChHHHHHHhCCCCCCcEEEEEcCCCCchhhhHHhhCCC-CcEEEEeCCCCC----
Q 003222 184 LPGYCPMPAFRDVIDVPLVVRRLHKSRKEVRKELGIEDDVKLLILNFGGQPAGWKLKEEYLPS-GWKCLVCGASDS---- 258 (838)
Q Consensus 184 ~~~~~~~p~~~~v~~ip~~~~~~~~~~~~~r~~l~~~~~~~~Vlvs~Gs~~~~~~ll~~l~~~-~~~~vv~G~~~~---- 258 (838)
+++.++ +-+++-+.... -.+.|+++.|+.... .+...... .|.+.+.-....
T Consensus 110 -----------~~~~V~--------d~~ea~~~~~~--~~~rVflt~G~~~l~--~f~~~~~~~~~~~Rvlp~~~~~~~~ 166 (257)
T COG2099 110 -----------NWIEVA--------DIEEAAEAAKQ--LGRRVFLTTGRQNLA--HFVAADAHSHVLARVLPPPDVLAKC 166 (257)
T ss_pred -----------ceEEec--------CHHHHHHHHhc--cCCcEEEecCccchH--HHhcCcccceEEEEEcCchHHHHHH
Confidence 111111 01122222221 114688898877652 11122112 222223221111
Q ss_pred ---CC-CCCeEEC--CCCCCHH-HHHh--hcCEEEecCChhh------HHHHHHcCCcEEEEeCC
Q 003222 259 ---QL-PPNFIKL--PKDAYTP-DFMA--ASDCMLGKIGYGT------VSEALAYKLPFVFVRRD 308 (838)
Q Consensus 259 ---~l-p~nv~~~--~~~~~~p-dlLa--~adl~It~gG~~T------v~Eal~~GvP~l~iP~~ 308 (838)
.+ +.++.-. +|...+. .+|. .+|++||+--.++ +.-|..+|+|+|+|.++
T Consensus 167 ~~~~~p~~~Iia~~GPfs~~~n~all~q~~id~vItK~SG~~Gg~~~Ki~aA~eLgi~VI~I~Rp 231 (257)
T COG2099 167 EDLGVPPARIIAMRGPFSEEDNKALLEQYRIDVVVTKNSGGAGGTYEKIEAARELGIPVIMIERP 231 (257)
T ss_pred HhcCCChhhEEEecCCcChHHHHHHHHHhCCCEEEEccCCcccCcHHHHHHHHHcCCcEEEEecC
Confidence 12 3444433 5655554 4554 4999999733232 55688999999999987
|
|
| >TIGR02195 heptsyl_trn_II lipopolysaccharide heptosyltransferase II | Back alignment and domain information |
|---|
Probab=93.08 E-value=8.5 Score=42.51 Aligned_cols=93 Identities=16% Similarity=0.372 Sum_probs=57.7
Q ss_pred HHHHhCCCCCCcEEEEEcCCC-Cc--hh------hhHHhhCCCCcEEEEeCCCCCC---------CCCCeE-ECCCCC--
Q 003222 213 VRKELGIEDDVKLLILNFGGQ-PA--GW------KLKEEYLPSGWKCLVCGASDSQ---------LPPNFI-KLPKDA-- 271 (838)
Q Consensus 213 ~r~~l~~~~~~~~Vlvs~Gs~-~~--~~------~ll~~l~~~~~~~vv~G~~~~~---------lp~nv~-~~~~~~-- 271 (838)
+.+.++++.++++|.+..|+. +. .| ++.+.+...+..++++|...+. .+.++. ..+..+
T Consensus 164 ~~~~~~~~~~~~~i~i~pga~~~~~K~Wp~e~~~~li~~l~~~~~~ivl~G~~~e~~~~~~i~~~~~~~~~~l~g~~sL~ 243 (334)
T TIGR02195 164 ALAKFGLDTERPIIAFCPGAEFGPAKRWPHEHYAELAKRLIDQGYQVVLFGSAKDHPAGNEIEALLPGELRNLAGETSLD 243 (334)
T ss_pred HHHHcCCCCCCCEEEEcCCCCCCccCCCCHHHHHHHHHHHHHCCCEEEEEEChhhHHHHHHHHHhCCcccccCCCCCCHH
Confidence 445566665678888888874 22 12 2333444445677777754321 233332 223221
Q ss_pred CHHHHHhhcCEEEecCChhhHHHHHHcCCcEEEEe
Q 003222 272 YTPDFMAASDCMLGKIGYGTVSEALAYKLPFVFVR 306 (838)
Q Consensus 272 ~~pdlLa~adl~It~gG~~Tv~Eal~~GvP~l~iP 306 (838)
.+..+|+.||+|||.=. |-+.=|.+.|+|+|.+=
T Consensus 244 el~ali~~a~l~I~~DS-Gp~HlAaA~~~P~i~lf 277 (334)
T TIGR02195 244 EAVDLIALAKAVVTNDS-GLMHVAAALNRPLVALY 277 (334)
T ss_pred HHHHHHHhCCEEEeeCC-HHHHHHHHcCCCEEEEE
Confidence 23467889999999544 67888999999999985
|
This family consists of examples of ADP-heptose:LPS heptosyltransferase II, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria. |
| >PF13477 Glyco_trans_4_2: Glycosyl transferase 4-like | Back alignment and domain information |
|---|
Probab=93.00 E-value=1.1 Score=42.32 Aligned_cols=100 Identities=14% Similarity=0.139 Sum_probs=56.1
Q ss_pred EEEEeecCCCcccHHHHHHHHHHHHHCCCeEEEEeCCCCcccccccCCCceeeeeeccCCCcccccccccChHHHHHHHH
Q 003222 17 VFAYYVTGHGFGHATRVVEVVRNLISAGHDVHVVTGAPDFVFTSEIQSPRLFIRKVLLDCGAVQADALTVDRLASLEKYS 96 (838)
Q Consensus 17 ~Il~~v~g~G~GHv~r~laLA~~L~~~Gh~V~~v~~~~~~~~~~~i~~~~~~~~~~~~~~g~~~~~~~~~~~~~~l~~~~ 96 (838)
||+++.... ..| ...+++.|.++|++|++++..... .......++.+... ..+ ... .+ .+.
T Consensus 1 KIl~i~~~~-~~~---~~~~~~~L~~~g~~V~ii~~~~~~--~~~~~~~~i~~~~~--~~~--------~k~--~~-~~~ 61 (139)
T PF13477_consen 1 KILLIGNTP-STF---IYNLAKELKKRGYDVHIITPRNDY--EKYEIIEGIKVIRL--PSP--------RKS--PL-NYI 61 (139)
T ss_pred CEEEEecCc-HHH---HHHHHHHHHHCCCEEEEEEcCCCc--hhhhHhCCeEEEEe--cCC--------CCc--cH-HHH
Confidence 355554434 234 567899999999999999885432 11111123333331 100 000 01 111
Q ss_pred HHhhccHHHHHHHHHHHHhcCCCcEEEECC-Cc---hHHHHHHHhC-CcEEEE
Q 003222 97 ETAVAPRKSILKDEVEWLNSIKADLVVSDV-VP---VACRAAADAG-IRSVCV 144 (838)
Q Consensus 97 ~~~~~~~~~~l~~~~~~L~~~kPDlVVsD~-~~---~~~~aA~~lg-IP~V~i 144 (838)
. . .+...++++.+||+|.+.. .+ .+.++++..+ +|.+..
T Consensus 62 ~--------~-~~l~k~ik~~~~DvIh~h~~~~~~~~~~l~~~~~~~~~~i~~ 105 (139)
T PF13477_consen 62 K--------Y-FRLRKIIKKEKPDVIHCHTPSPYGLFAMLAKKLLKNKKVIYT 105 (139)
T ss_pred H--------H-HHHHHHhccCCCCEEEEecCChHHHHHHHHHHHcCCCCEEEE
Confidence 1 1 2446778999999999775 32 2445667788 888754
|
|
| >PF02571 CbiJ: Precorrin-6x reductase CbiJ/CobK; InterPro: IPR003723 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt | Back alignment and domain information |
|---|
Probab=92.80 E-value=15 Score=38.96 Aligned_cols=151 Identities=20% Similarity=0.196 Sum_probs=81.0
Q ss_pred HHHHhcCCCcEEE-ECCCchH------HHHHHHhCCcEEEEecCchhHHHHhhhhhcccchHHHHHHHHhhccccceEEe
Q 003222 111 VEWLNSIKADLVV-SDVVPVA------CRAAADAGIRSVCVTNFSWDFIYAEYVMAAGHHHRSIVWQIAEDYSHCEFLIR 183 (838)
Q Consensus 111 ~~~L~~~kPDlVV-sD~~~~~------~~aA~~lgIP~V~is~~~~~~i~~~~~~~~~~~~~~i~~~l~~~y~~~d~ll~ 183 (838)
.++|++.++++|| ..|+|+. ..+|+.+|||++.+..-.|... ..+
T Consensus 59 ~~~l~~~~i~~vIDATHPfA~~is~na~~a~~~~~ipylR~eRp~~~~~------------------------~~~---- 110 (249)
T PF02571_consen 59 AEFLRENGIDAVIDATHPFAAEISQNAIEACRELGIPYLRFERPSWQPE------------------------PDD---- 110 (249)
T ss_pred HHHHHhCCCcEEEECCCchHHHHHHHHHHHHhhcCcceEEEEcCCcccC------------------------CCC----
Confidence 5678899999999 5566653 4577888999988744333100 000
Q ss_pred cCCCCCCCCCCceeecCcccccCCcChHHHHHHhCCCCCCcEEEEEcCCCCchhhhHHhhCCCC-cEEEEeCCCCCC--C
Q 003222 184 LPGYCPMPAFRDVIDVPLVVRRLHKSRKEVRKELGIEDDVKLLILNFGGQPAGWKLKEEYLPSG-WKCLVCGASDSQ--L 260 (838)
Q Consensus 184 ~~~~~~~p~~~~v~~ip~~~~~~~~~~~~~r~~l~~~~~~~~Vlvs~Gs~~~~~~ll~~l~~~~-~~~vv~G~~~~~--l 260 (838)
+++.+. +-+++-+.+.. .+...||++.|+.... .+........ +.+.+.-..... +
T Consensus 111 -----------~~~~v~--------~~~eA~~~l~~-~~~~~iflttGsk~L~-~f~~~~~~~~r~~~RvLp~~~~~~g~ 169 (249)
T PF02571_consen 111 -----------NWHYVD--------SYEEAAELLKE-LGGGRIFLTTGSKNLP-PFVPAPLPGERLFARVLPTPESALGF 169 (249)
T ss_pred -----------eEEEeC--------CHHHHHHHHhh-cCCCCEEEeCchhhHH-HHhhcccCCCEEEEEECCCccccCCC
Confidence 111110 11233333321 1224689999987763 2222111111 222232111112 2
Q ss_pred -CCCeEEC--CCCCCHH-HHHhh--cCEEEecCChh-h----HHHHHHcCCcEEEEeCCCC
Q 003222 261 -PPNFIKL--PKDAYTP-DFMAA--SDCMLGKIGYG-T----VSEALAYKLPFVFVRRDYF 310 (838)
Q Consensus 261 -p~nv~~~--~~~~~~p-dlLa~--adl~It~gG~~-T----v~Eal~~GvP~l~iP~~~~ 310 (838)
+.|+... +|...+. .++.. +|++||+--++ + +.-|..+|+|+|+|-++..
T Consensus 170 ~~~~iia~~GPfs~e~n~al~~~~~i~~lVtK~SG~~g~~eKi~AA~~lgi~vivI~RP~~ 230 (249)
T PF02571_consen 170 PPKNIIAMQGPFSKELNRALFRQYGIDVLVTKESGGSGFDEKIEAARELGIPVIVIKRPPE 230 (249)
T ss_pred ChhhEEEEeCCCCHHHHHHHHHHcCCCEEEEcCCCchhhHHHHHHHHHcCCeEEEEeCCCC
Confidence 4565533 5554444 56654 99999973222 2 3458899999999998743
|
Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CobK and CbiJ precorrin-6x reductase (1.3.1.54 from EC). In the aerobic pathway, CobK catalyses the reduction of the macrocycle of precorrin-6X to produce precorrin-6Y; while in the anaerobic pathway CbiJ catalyses the reduction of the macrocycle of cobalt-precorrin-6X into cobalt-precorrin-6Y [, ].; GO: 0016994 precorrin-6A reductase activity, 0009236 cobalamin biosynthetic process, 0055114 oxidation-reduction process |
| >PF08660 Alg14: Oligosaccharide biosynthesis protein Alg14 like; InterPro: IPR013969 Alg14 is involved dolichol-linked oligosaccharide biosynthesis and anchors the catalytic subunit Alg13 to the ER membrane [] | Back alignment and domain information |
|---|
Probab=92.73 E-value=0.95 Score=45.12 Aligned_cols=39 Identities=21% Similarity=0.378 Sum_probs=29.4
Q ss_pred HHHHHhcCCCcEEEECC---CchHHHHHHHh------CCcEEEEecCc
Q 003222 110 EVEWLNSIKADLVVSDV---VPVACRAAADA------GIRSVCVTNFS 148 (838)
Q Consensus 110 ~~~~L~~~kPDlVVsD~---~~~~~~aA~~l------gIP~V~is~~~ 148 (838)
...++.+.+||+||+.- ..+.+++|+.+ +.+.|.+..++
T Consensus 84 ~~~il~r~rPdvii~nGpg~~vp~~~~~~l~~~~~~~~~kiIyIES~a 131 (170)
T PF08660_consen 84 SLRILRRERPDVIISNGPGTCVPVCLAAKLLRLLGLRGSKIIYIESFA 131 (170)
T ss_pred HHHHHHHhCCCEEEEcCCceeeHHHHHHHHHHHhhccCCcEEEEEeee
Confidence 35667889999999885 33456678888 99999986543
|
|
| >COG3660 Predicted nucleoside-diphosphate-sugar epimerase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=92.21 E-value=18 Score=38.31 Aligned_cols=85 Identities=21% Similarity=0.183 Sum_probs=50.6
Q ss_pred HHHHhhcCEEEecCC-hhhHHHHHHcCCcEEEEeCCCCC-ChHH-HHHHHHHcCcEEEEecCCCChhhHHHHHHHHhhCC
Q 003222 274 PDFMAASDCMLGKIG-YGTVSEALAYKLPFVFVRRDYFN-EEPF-LRNMLEFYQGGVEMIRRDLLTGHWKPYLERAISLK 350 (838)
Q Consensus 274 pdlLa~adl~It~gG-~~Tv~Eal~~GvP~l~iP~~~~~-EQ~~-Na~~l~~~G~g~~l~~~~~~~~~l~~~l~~ll~~~ 350 (838)
+++|+++|.+|..+. -+..+||++.|+|+-+.-.+.+. .-+. --+.|++.+++...+...+ ++++.
T Consensus 239 ~~~La~Adyii~TaDSinM~sEAasTgkPv~~~~~~~~~s~K~r~Fi~~L~eq~~AR~f~~~~~-------~~e~y---- 307 (329)
T COG3660 239 IDMLAAADYIISTADSINMCSEAASTGKPVFILEPPNFNSLKFRIFIEQLVEQKIARPFEGSNL-------ALEEY---- 307 (329)
T ss_pred HHHHhhcceEEEecchhhhhHHHhccCCCeEEEecCCcchHHHHHHHHHHHHhhhccccCcchh-------hhccc----
Confidence 399999999997665 45688999999999887654442 1111 1233455555544332111 11111
Q ss_pred CCccCCCCHHHHHHHHHHHHh
Q 003222 351 PCYEGGINGGEVAAHILQETA 371 (838)
Q Consensus 351 ~~~~~~~~g~~~~a~~i~~~~ 371 (838)
.| ...+-++++|+.|...+
T Consensus 308 -sy-~PLnEt~RiA~~Ira~l 326 (329)
T COG3660 308 -SY-KPLNETERIAEEIRAEL 326 (329)
T ss_pred -cc-CCchHHHHHHHHHHHHh
Confidence 11 35677888888776653
|
|
| >PF13579 Glyco_trans_4_4: Glycosyl transferase 4-like domain; PDB: 3C4Q_B 3C4V_A 3C48_B 1Z2T_A | Back alignment and domain information |
|---|
Probab=92.04 E-value=0.6 Score=44.46 Aligned_cols=97 Identities=26% Similarity=0.251 Sum_probs=44.4
Q ss_pred ccHHHHHHHHHHHHHCCCeEEEEeCCCCcccccccCCCceeeeeeccCCCcccccccccChHHHHHHHHHHhhccHHHHH
Q 003222 28 GHATRVVEVVRNLISAGHDVHVVTGAPDFVFTSEIQSPRLFIRKVLLDCGAVQADALTVDRLASLEKYSETAVAPRKSIL 107 (838)
Q Consensus 28 GHv~r~laLA~~L~~~Gh~V~~v~~~~~~~~~~~i~~~~~~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l 107 (838)
|--.....++++|.++||+|++++..+...... ....++.+.... .. ... .....+ ...
T Consensus 2 G~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~-~~~~~~~~~~~~--~~--~~~----~~~~~~------------~~~ 60 (160)
T PF13579_consen 2 GIERYVRELARALAARGHEVTVVTPQPDPEDDE-EEEDGVRVHRLP--LP--RRP----WPLRLL------------RFL 60 (160)
T ss_dssp HHHHHHHHHHHHHHHTT-EEEEEEE---GGG-S-EEETTEEEEEE----S---SS----SGGGHC------------CHH
T ss_pred CHHHHHHHHHHHHHHCCCEEEEEecCCCCcccc-cccCCceEEecc--CC--ccc----hhhhhH------------HHH
Confidence 445667899999999999999998754222111 111233333211 00 000 000000 011
Q ss_pred HHHHHHH--hcCCCcEEEECCCc---hHHHHHHHhCCcEEEEe
Q 003222 108 KDEVEWL--NSIKADLVVSDVVP---VACRAAADAGIRSVCVT 145 (838)
Q Consensus 108 ~~~~~~L--~~~kPDlVVsD~~~---~~~~aA~~lgIP~V~is 145 (838)
....+++ ++.+||+|++.... .+.++....++|.|...
T Consensus 61 ~~~~~~l~~~~~~~Dvv~~~~~~~~~~~~~~~~~~~~p~v~~~ 103 (160)
T PF13579_consen 61 RRLRRLLAARRERPDVVHAHSPTAGLVAALARRRRGIPLVVTV 103 (160)
T ss_dssp HHHHHHCHHCT---SEEEEEHHHHHHHHHHHHHHHT--EEEE-
T ss_pred HHHHHHHhhhccCCeEEEecccchhHHHHHHHHccCCcEEEEE
Confidence 2224445 78999999987632 23333337799998764
|
|
| >PRK10916 ADP-heptose:LPS heptosyltransferase II; Provisional | Back alignment and domain information |
|---|
Probab=91.91 E-value=12 Score=41.62 Aligned_cols=91 Identities=14% Similarity=0.266 Sum_probs=54.9
Q ss_pred HHHhCCCCCCcEEEEEcCCC-Cc--hh------hhHHhhCCCCcEEEEeCCCCCC---------CCC----CeE-ECCCC
Q 003222 214 RKELGIEDDVKLLILNFGGQ-PA--GW------KLKEEYLPSGWKCLVCGASDSQ---------LPP----NFI-KLPKD 270 (838)
Q Consensus 214 r~~l~~~~~~~~Vlvs~Gs~-~~--~~------~ll~~l~~~~~~~vv~G~~~~~---------lp~----nv~-~~~~~ 270 (838)
.+.+++.+++++|.+..|+. +. .| ++.+.+...++.++++|...+. ++. ++. ..+..
T Consensus 171 ~~~~~~~~~~~~i~i~pga~~~~~K~Wp~e~~a~l~~~l~~~~~~vvl~Gg~~e~~~~~~i~~~~~~~~~~~~~~l~g~~ 250 (348)
T PRK10916 171 CAAFSLSSERPIIGFCPGAEFGPAKRWPHYHYAELAQQLIDEGYQVVLFGSAKDHEAGNEILAALNTEQQAWCRNLAGET 250 (348)
T ss_pred HHHcCCCCCCCEEEEeCCCCCccccCCCHHHHHHHHHHHHHCCCeEEEEeCHHhHHHHHHHHHhcccccccceeeccCCC
Confidence 34445444678888888874 22 22 2333444456677777654321 221 222 22332
Q ss_pred CCHH---HHHhhcCEEEecCChhhHHHHHHcCCcEEEEe
Q 003222 271 AYTP---DFMAASDCMLGKIGYGTVSEALAYKLPFVFVR 306 (838)
Q Consensus 271 ~~~p---dlLa~adl~It~gG~~Tv~Eal~~GvP~l~iP 306 (838)
.+. .+|+.|++|||.=. |-+.=|.+.|+|+|.+=
T Consensus 251 -sL~el~ali~~a~l~I~nDT-Gp~HlAaA~g~P~valf 287 (348)
T PRK10916 251 -QLEQAVILIAACKAIVTNDS-GLMHVAAALNRPLVALY 287 (348)
T ss_pred -CHHHHHHHHHhCCEEEecCC-hHHHHHHHhCCCEEEEE
Confidence 344 67788999999433 67888999999999974
|
|
| >TIGR00715 precor6x_red precorrin-6x reductase | Back alignment and domain information |
|---|
Probab=91.89 E-value=20 Score=38.25 Aligned_cols=49 Identities=18% Similarity=0.207 Sum_probs=32.4
Q ss_pred CCCeEEC--CCCCCHH-HHHhh--cCEEEec--CChhh----HHHHHHcCCcEEEEeCCC
Q 003222 261 PPNFIKL--PKDAYTP-DFMAA--SDCMLGK--IGYGT----VSEALAYKLPFVFVRRDY 309 (838)
Q Consensus 261 p~nv~~~--~~~~~~p-dlLa~--adl~It~--gG~~T----v~Eal~~GvP~l~iP~~~ 309 (838)
+.|+..+ +|...+. .++.+ +|++||+ ||.|. +.-|..+|+|+|+|.++.
T Consensus 174 ~~~iia~~gPfs~e~n~al~~~~~i~~lVtK~SG~~Gg~~eKi~AA~~lgi~vivI~RP~ 233 (256)
T TIGR00715 174 SDRIIAMRGPFSEELEKALLREYRIDAVVTKASGEQGGELEKVKAAEALGINVIRIARPQ 233 (256)
T ss_pred hhcEEEEeCCCCHHHHHHHHHHcCCCEEEEcCCCCccchHHHHHHHHHcCCcEEEEeCCC
Confidence 4565533 5554444 56664 9999996 23222 445778899999999874
|
This enzyme was found to be a monomer by gel filtration. |
| >PF13844 Glyco_transf_41: Glycosyl transferase family 41; PDB: 3PE4_C 3PE3_D 3TAX_C 2XGO_A 2JLB_B 2XGM_A 2VSY_B 2XGS_B 2VSN_A | Back alignment and domain information |
|---|
Probab=91.55 E-value=0.48 Score=54.51 Aligned_cols=112 Identities=15% Similarity=0.133 Sum_probs=54.6
Q ss_pred HHHhCCCCCCcEEEEEcCCCCc-hhhhHH---hhC--CCCcEE-EEeCCCCCC-----------C-CCCeEECCCCCCHH
Q 003222 214 RKELGIEDDVKLLILNFGGQPA-GWKLKE---EYL--PSGWKC-LVCGASDSQ-----------L-PPNFIKLPKDAYTP 274 (838)
Q Consensus 214 r~~l~~~~~~~~Vlvs~Gs~~~-~~~ll~---~l~--~~~~~~-vv~G~~~~~-----------l-p~nv~~~~~~~~~p 274 (838)
|+.+|++ +..++|.+|....+ ..+.+. +++ -|+-++ +........ + ++.+.+.+..+ ..
T Consensus 276 R~~~gLp-~d~vvF~~fn~~~KI~p~~l~~W~~IL~~vP~S~L~L~~~~~~~~~~l~~~~~~~Gv~~~Ri~f~~~~~-~~ 353 (468)
T PF13844_consen 276 RAQYGLP-EDAVVFGSFNNLFKISPETLDLWARILKAVPNSRLWLLRFPASGEARLRRRFAAHGVDPDRIIFSPVAP-RE 353 (468)
T ss_dssp TGGGT---SSSEEEEE-S-GGG--HHHHHHHHHHHHHSTTEEEEEEETSTTHHHHHHHHHHHTTS-GGGEEEEE----HH
T ss_pred HHHcCCC-CCceEEEecCccccCCHHHHHHHHHHHHhCCCcEEEEeeCCHHHHHHHHHHHHHcCCChhhEEEcCCCC-HH
Confidence 6778997 55688888875544 112222 121 133333 333322110 2 45566654332 23
Q ss_pred HHH---hhcCEEEe---cCChhhHHHHHHcCCcEEEEeCCCCCChHHHHHHHHHcCcEEE
Q 003222 275 DFM---AASDCMLG---KIGYGTVSEALAYKLPFVFVRRDYFNEEPFLRNMLEFYQGGVE 328 (838)
Q Consensus 275 dlL---a~adl~It---~gG~~Tv~Eal~~GvP~l~iP~~~~~EQ~~Na~~l~~~G~g~~ 328 (838)
+.| ..+|+++- .+|.+|++||+++|||+|.++-..+.- ..-+..|...|+...
T Consensus 354 ehl~~~~~~DI~LDT~p~nG~TTt~dALwmGVPvVTl~G~~~~s-R~~aSiL~~lGl~El 412 (468)
T PF13844_consen 354 EHLRRYQLADICLDTFPYNGGTTTLDALWMGVPVVTLPGETMAS-RVGASILRALGLPEL 412 (468)
T ss_dssp HHHHHGGG-SEEE--SSS--SHHHHHHHHHT--EEB---SSGGG-SHHHHHHHHHT-GGG
T ss_pred HHHHHhhhCCEEeeCCCCCCcHHHHHHHHcCCCEEeccCCCchh-HHHHHHHHHcCCchh
Confidence 454 45999994 357799999999999999999443332 245677888888743
|
|
| >cd03789 GT1_LPS_heptosyltransferase Lipopolysaccharide heptosyltransferase is involved in the biosynthesis of lipooligosaccharide (LOS) | Back alignment and domain information |
|---|
Probab=90.36 E-value=16 Score=39.18 Aligned_cols=36 Identities=11% Similarity=0.041 Sum_probs=29.0
Q ss_pred EEEeecCCCcccHHHHHHHHHHHHHCC--CeEEEEeCCC
Q 003222 18 FAYYVTGHGFGHATRVVEVVRNLISAG--HDVHVVTGAP 54 (838)
Q Consensus 18 Il~~v~g~G~GHv~r~laLA~~L~~~G--h~V~~v~~~~ 54 (838)
||++-.+ +.|-+....++.++|+++. .+|++++...
T Consensus 2 ILii~~~-~iGD~i~~~p~l~~Lk~~~P~~~I~~l~~~~ 39 (279)
T cd03789 2 ILVIRLS-WIGDVVLATPLLRALKARYPDARITVLAPPW 39 (279)
T ss_pred EEEEecc-cHHHHHHHHHHHHHHHHHCCCCEEEEEEChh
Confidence 5555444 8999999999999999985 6899988753
|
Lipopolysaccharide (LPS) is a major component of the outer membrane of gram-negative bacteria. LPS heptosyltransferase transfers heptose molecules from ADP-heptose to 3-deoxy-D-manno-octulosonic acid (KDO), a part of the inner core component of LPS. This family belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility. |
| >PF01975 SurE: Survival protein SurE; InterPro: IPR002828 This entry represents a SurE-like structural domain with a 3-layer alpha/bete/alpha topology that bears some topological similarity to the N-terminal domain of the glutaminase/asparaginase family | Back alignment and domain information |
|---|
Probab=90.27 E-value=1.5 Score=44.69 Aligned_cols=36 Identities=25% Similarity=0.398 Sum_probs=24.4
Q ss_pred EEEEEeecCCCcccHHHHHHHHHHHHHCCCeEEEEeCC
Q 003222 16 LVFAYYVTGHGFGHATRVVEVVRNLISAGHDVHVVTGA 53 (838)
Q Consensus 16 ~~Il~~v~g~G~GHv~r~laLA~~L~~~Gh~V~~v~~~ 53 (838)
|+||+ +.--|. +..-..+|+++|.+.||+|+++.+.
T Consensus 1 M~ILl-TNDDGi-~a~Gi~aL~~~L~~~g~~V~VvAP~ 36 (196)
T PF01975_consen 1 MRILL-TNDDGI-DAPGIRALAKALSALGHDVVVVAPD 36 (196)
T ss_dssp SEEEE-E-SS-T-TSHHHHHHHHHHTTTSSEEEEEEES
T ss_pred CeEEE-EcCCCC-CCHHHHHHHHHHHhcCCeEEEEeCC
Confidence 45644 344443 4445678999998778999999775
|
This domain is found in the stationary phase survival protein SurE, a metal ion-dependent phosphatase found in eubacteria, archaea and eukaryotes. In Escherichia coli, SurE also has activity as a nucleotidase and exopolyphosphatase, and may be involved in the stress response []. E. coli cells with mutations in the surE gene survive poorly in stationary phase []. The structure of SurE homologues have been determined from Thermotoga maritima [] and the archaea Pyrobaculum aerophilum []. The T. maritima SurE homologue has phosphatase activity that is inhibited by vanadate or tungstate, both of which bind adjacent to the divalent metal ion. This domain is found in acid phosphatases (3.1.3.2 from EC), 5'-nucleotidases (3.1.3.5 from EC), 3'-nucleotidases (3.1.3.6 from EC) and exopolyphosphatases (3.6.1.11 from EC).; GO: 0016787 hydrolase activity; PDB: 1L5X_B 2V4O_D 2V4N_A 2WQK_B 2E6G_G 2E69_D 2E6C_C 2E6B_D 2E6E_A 2E6H_A .... |
| >COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=90.06 E-value=1.3 Score=51.27 Aligned_cols=111 Identities=18% Similarity=0.132 Sum_probs=68.1
Q ss_pred HHHhCCCCCCcEEEEEcCCCCch-hhhHHh---h---CCCCcEEEEeCCCCCC-------------C-CCCeEECCCCCC
Q 003222 214 RKELGIEDDVKLLILNFGGQPAG-WKLKEE---Y---LPSGWKCLVCGASDSQ-------------L-PPNFIKLPKDAY 272 (838)
Q Consensus 214 r~~l~~~~~~~~Vlvs~Gs~~~~-~~ll~~---l---~~~~~~~vv~G~~~~~-------------l-p~nv~~~~~~~~ 272 (838)
|..+|++ +.-+||++|++..+- .+++.. + .|..+.++..|..+++ + ++.+++.+..+.
T Consensus 421 R~~lglp-~~avVf~c~~n~~K~~pev~~~wmqIL~~vP~Svl~L~~~~~~~~~~~~l~~la~~~Gv~~eRL~f~p~~~~ 499 (620)
T COG3914 421 RAQLGLP-EDAVVFCCFNNYFKITPEVFALWMQILSAVPNSVLLLKAGGDDAEINARLRDLAEREGVDSERLRFLPPAPN 499 (620)
T ss_pred hhhcCCC-CCeEEEEecCCcccCCHHHHHHHHHHHHhCCCcEEEEecCCCcHHHHHHHHHHHHHcCCChhheeecCCCCC
Confidence 4568886 667899999877652 233331 1 1233333333432221 1 456666665543
Q ss_pred HHHHH---hhcCEEEe---cCChhhHHHHHHcCCcEEEEeCCCCCChHH--H-HHHHHHcCcEEEEe
Q 003222 273 TPDFM---AASDCMLG---KIGYGTVSEALAYKLPFVFVRRDYFNEEPF--L-RNMLEFYQGGVEMI 330 (838)
Q Consensus 273 ~pdlL---a~adl~It---~gG~~Tv~Eal~~GvP~l~iP~~~~~EQ~~--N-a~~l~~~G~g~~l~ 330 (838)
++.. .-+|+|.- -+|.+|+.|++.+|+|||..+ +||+. | +..+...|+-..+-
T Consensus 500 -~~h~a~~~iADlvLDTyPY~g~TTa~daLwm~vPVlT~~----G~~FasR~~~si~~~agi~e~vA 561 (620)
T COG3914 500 -EDHRARYGIADLVLDTYPYGGHTTASDALWMGVPVLTRV----GEQFASRNGASIATNAGIPELVA 561 (620)
T ss_pred -HHHHHhhchhheeeecccCCCccchHHHHHhcCceeeec----cHHHHHhhhHHHHHhcCCchhhc
Confidence 3444 45999995 478899999999999999986 57753 2 24445666654443
|
|
| >KOG1111 consensus N-acetylglucosaminyltransferase complex, subunit PIG-A/SPT14, required for phosphatidylinositol biosynthesis/Sulfolipid synthase [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=90.04 E-value=6.9 Score=43.04 Aligned_cols=67 Identities=19% Similarity=0.206 Sum_probs=48.0
Q ss_pred CCcEEEEeCCCCCC-----------CCCCeEECCCCC--CHHHHHhhcCEEEecC----ChhhHHHHHHcCCcEEEEeCC
Q 003222 246 SGWKCLVCGASDSQ-----------LPPNFIKLPKDA--YTPDFMAASDCMLGKI----GYGTVSEALAYKLPFVFVRRD 308 (838)
Q Consensus 246 ~~~~~vv~G~~~~~-----------lp~nv~~~~~~~--~~pdlLa~adl~It~g----G~~Tv~Eal~~GvP~l~iP~~ 308 (838)
++.+|++.|..+.. +.+.|.+++-++ .+-+.|..=|+|+..+ =..++.||+.||+|++.....
T Consensus 225 p~vrfii~GDGPk~i~lee~lEk~~l~~rV~~lG~v~h~~Vr~vl~~G~IFlntSlTEafc~~ivEAaScGL~VVsTrVG 304 (426)
T KOG1111|consen 225 PEVRFIIIGDGPKRIDLEEMLEKLFLQDRVVMLGTVPHDRVRDVLVRGDIFLNTSLTEAFCMVIVEAASCGLPVVSTRVG 304 (426)
T ss_pred CCeeEEEecCCcccchHHHHHHHhhccCceEEecccchHHHHHHHhcCcEEeccHHHHHHHHHHHHHHhCCCEEEEeecC
Confidence 56788888877631 567777776553 3458999999999532 224788999999999998754
Q ss_pred CCCC
Q 003222 309 YFNE 312 (838)
Q Consensus 309 ~~~E 312 (838)
+-.|
T Consensus 305 GIpe 308 (426)
T KOG1111|consen 305 GIPE 308 (426)
T ss_pred Cccc
Confidence 4333
|
|
| >COG0859 RfaF ADP-heptose:LPS heptosyltransferase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=89.86 E-value=36 Score=37.71 Aligned_cols=83 Identities=23% Similarity=0.440 Sum_probs=53.7
Q ss_pred CcEEEEEcC-CCCch--h------hhHHhhCCCCcEEEEeCCCCCC---------CCCCeEECCCCC--CHHHHHhhcCE
Q 003222 223 VKLLILNFG-GQPAG--W------KLKEEYLPSGWKCLVCGASDSQ---------LPPNFIKLPKDA--YTPDFMAASDC 282 (838)
Q Consensus 223 ~~~Vlvs~G-s~~~~--~------~ll~~l~~~~~~~vv~G~~~~~---------lp~nv~~~~~~~--~~pdlLa~adl 282 (838)
++.|++..| +.+.. + ++.+.+....+.++++|...+. .+..+.+.+..+ .+..+++.||+
T Consensus 175 ~~~i~i~pg~s~~~~K~wp~e~~~~l~~~l~~~~~~Vvl~g~~~e~e~~~~i~~~~~~~~~l~~k~sL~e~~~li~~a~l 254 (334)
T COG0859 175 RPYIVINPGASRGSAKRWPLEHYAELAELLIAKGYQVVLFGGPDEEERAEEIAKGLPNAVILAGKTSLEELAALIAGADL 254 (334)
T ss_pred CCeEEEeccccccccCCCCHHHHHHHHHHHHHCCCEEEEecChHHHHHHHHHHHhcCCccccCCCCCHHHHHHHHhcCCE
Confidence 688999888 55332 2 3334455556788888765421 222222344432 23367789999
Q ss_pred EEecCChhhHHHHHHcCCcEEEEe
Q 003222 283 MLGKIGYGTVSEALAYKLPFVFVR 306 (838)
Q Consensus 283 ~It~gG~~Tv~Eal~~GvP~l~iP 306 (838)
|||.-. |-+.=|.+.|+|+|++-
T Consensus 255 ~I~~DS-g~~HlAaA~~~P~I~iy 277 (334)
T COG0859 255 VIGNDS-GPMHLAAALGTPTIALY 277 (334)
T ss_pred EEccCC-hHHHHHHHcCCCEEEEE
Confidence 998443 67888999999999986
|
|
| >PF06925 MGDG_synth: Monogalactosyldiacylglycerol (MGDG) synthase; InterPro: IPR009695 This entry represents a conserved region of approximately 180 residues found towirds the N terminus of a number of plant and bacterial diacylglycerol glucosyltransferases, such as monogalactosyldiacylglycerol synthase [] | Back alignment and domain information |
|---|
Probab=89.73 E-value=0.38 Score=47.77 Aligned_cols=41 Identities=24% Similarity=0.266 Sum_probs=28.6
Q ss_pred HHHHHHHHhcCCCcEEEECCCchHHH-HH----H-Hh-CCcEEE-EecC
Q 003222 107 LKDEVEWLNSIKADLVVSDVVPVACR-AA----A-DA-GIRSVC-VTNF 147 (838)
Q Consensus 107 l~~~~~~L~~~kPDlVVsD~~~~~~~-aA----~-~l-gIP~V~-is~~ 147 (838)
.+...++|++.+||+||+.+++++.. ++ + .. ++|+++ +|||
T Consensus 78 ~~~l~~~l~~~~PD~IIsThp~~~~~~l~~lk~~~~~~~~p~~tvvTD~ 126 (169)
T PF06925_consen 78 ARRLIRLLREFQPDLIISTHPFPAQVPLSRLKRRGRLPNIPVVTVVTDF 126 (169)
T ss_pred HHHHHHHHhhcCCCEEEECCcchhhhHHHHHHHhhcccCCcEEEEEcCC
Confidence 34557889999999999999765444 33 1 23 588765 4777
|
; GO: 0016758 transferase activity, transferring hexosyl groups, 0009247 glycolipid biosynthetic process |
| >TIGR02400 trehalose_OtsA alpha,alpha-trehalose-phosphate synthase [UDP-forming] | Back alignment and domain information |
|---|
Probab=89.22 E-value=0.83 Score=53.03 Aligned_cols=68 Identities=19% Similarity=0.180 Sum_probs=51.2
Q ss_pred CHHHHHhhcCEEEecC---Chh-hHHHHHHcCCc----EEEEeCCCCCChHHHHHHHHHcCcEEEEecCCCChhhHHHHH
Q 003222 272 YTPDFMAASDCMLGKI---GYG-TVSEALAYKLP----FVFVRRDYFNEEPFLRNMLEFYQGGVEMIRRDLLTGHWKPYL 343 (838)
Q Consensus 272 ~~pdlLa~adl~It~g---G~~-Tv~Eal~~GvP----~l~iP~~~~~EQ~~Na~~l~~~G~g~~l~~~~~~~~~l~~~l 343 (838)
.++.+++.||+||..+ |+| ++.||+++|+| +|+-...+..++ + +.|+.+++.+ ++.+.++|
T Consensus 348 el~aly~aaDv~vv~S~~EG~~Lv~lEamA~g~P~~g~vVlS~~~G~~~~------l---~~gllVnP~d--~~~lA~aI 416 (456)
T TIGR02400 348 ELMALYRAADVGLVTPLRDGMNLVAKEYVAAQDPKDGVLILSEFAGAAQE------L---NGALLVNPYD--IDGMADAI 416 (456)
T ss_pred HHHHHHHhCcEEEECccccccCccHHHHHHhcCCCCceEEEeCCCCChHH------h---CCcEEECCCC--HHHHHHHH
Confidence 4568889999999743 655 78899999999 777665444433 3 2578888776 46899999
Q ss_pred HHHhhCC
Q 003222 344 ERAISLK 350 (838)
Q Consensus 344 ~~ll~~~ 350 (838)
.++++++
T Consensus 417 ~~aL~~~ 423 (456)
T TIGR02400 417 ARALTMP 423 (456)
T ss_pred HHHHcCC
Confidence 9999765
|
This enzyme catalyzes the key, penultimate step in biosynthesis of trehalose, a compatible solute made as an osmoprotectant in some species in all three domains of life. The gene symbol OtsA stands for osmotically regulated trehalose synthesis A. Trehalose helps protect against both osmotic and thermal stresses, and is made from two glucose subunits. This model excludes glucosylglycerol-phosphate synthase, an enzyme of an analogous osmoprotectant system in many cyanobacterial strains. This model does not identify archaeal examples, as they are more divergent than glucosylglycerol-phosphate synthase. Sequences that score in the gray zone between the trusted and noise cutoffs include a number of yeast multidomain proteins in which the N-terminal domain may be functionally equivalent to this family. The gray zone also includes the OtsA of Cornyebacterium glutamicum (and related species), shown to be responsib |
| >PF13439 Glyco_transf_4: Glycosyltransferase Family 4; PDB: 2JJM_E 3MBO_C 2GEJ_A 2GEK_A | Back alignment and domain information |
|---|
Probab=89.19 E-value=3.8 Score=39.60 Aligned_cols=27 Identities=33% Similarity=0.484 Sum_probs=22.0
Q ss_pred cccHHHHHHHHHHHHHCCCeEEEEeCC
Q 003222 27 FGHATRVVEVVRNLISAGHDVHVVTGA 53 (838)
Q Consensus 27 ~GHv~r~laLA~~L~~~Gh~V~~v~~~ 53 (838)
.|--.-+..|+++|+++||+|++++..
T Consensus 12 GG~e~~~~~l~~~l~~~G~~v~v~~~~ 38 (177)
T PF13439_consen 12 GGAERVVLNLARALAKRGHEVTVVSPG 38 (177)
T ss_dssp SHHHHHHHHHHHHHHHTT-EEEEEESS
T ss_pred ChHHHHHHHHHHHHHHCCCEEEEEEcC
Confidence 466666779999999999999999775
|
|
| >PRK10422 lipopolysaccharide core biosynthesis protein; Provisional | Back alignment and domain information |
|---|
Probab=88.22 E-value=47 Score=36.95 Aligned_cols=84 Identities=10% Similarity=0.209 Sum_probs=49.9
Q ss_pred CCcEEEEEcCCCCc--hh------hhHHhhCCCCcEEEEeC-CCCCC----------C-CCCe-EECCCCC--CHHHHHh
Q 003222 222 DVKLLILNFGGQPA--GW------KLKEEYLPSGWKCLVCG-ASDSQ----------L-PPNF-IKLPKDA--YTPDFMA 278 (838)
Q Consensus 222 ~~~~Vlvs~Gs~~~--~~------~ll~~l~~~~~~~vv~G-~~~~~----------l-p~nv-~~~~~~~--~~pdlLa 278 (838)
+.++|.+..|+... .| ++.+.+...+..++++| +...+ . ..++ ...+..+ .+..+|+
T Consensus 182 ~~~~i~i~pga~~~~K~Wp~e~fa~l~~~L~~~~~~vvl~ggp~e~e~~~~~~i~~~~~~~~~~~l~g~~sL~el~ali~ 261 (352)
T PRK10422 182 TQNYVVIQPTARQIFKCWDNDKFSAVIDALQARGYEVVLTSGPDKDDLACVNEIAQGCQTPPVTALAGKTTFPELGALID 261 (352)
T ss_pred CCCeEEEecCCCccccCCCHHHHHHHHHHHHHCCCeEEEEcCCChHHHHHHHHHHHhcCCCccccccCCCCHHHHHHHHH
Confidence 35678888776543 12 23334444466666664 33211 1 1122 2334332 2347788
Q ss_pred hcCEEEecCChhhHHHHHHcCCcEEEEe
Q 003222 279 ASDCMLGKIGYGTVSEALAYKLPFVFVR 306 (838)
Q Consensus 279 ~adl~It~gG~~Tv~Eal~~GvP~l~iP 306 (838)
.||+|||.=. |-+.=|.+.|+|+|++=
T Consensus 262 ~a~l~v~nDS-Gp~HlAaA~g~P~v~lf 288 (352)
T PRK10422 262 HAQLFIGVDS-APAHIAAAVNTPLICLF 288 (352)
T ss_pred hCCEEEecCC-HHHHHHHHcCCCEEEEE
Confidence 9999999544 67888999999999975
|
|
| >PF01075 Glyco_transf_9: Glycosyltransferase family 9 (heptosyltransferase); InterPro: IPR002201 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases | Back alignment and domain information |
|---|
Probab=85.11 E-value=5.8 Score=41.61 Aligned_cols=84 Identities=20% Similarity=0.293 Sum_probs=47.9
Q ss_pred CCCcEEEEEcCCCCch--h------hhHHhhCCCCcEEEEeCCCCC--C---------CCC-CeEECCCCCCHH---HHH
Q 003222 221 DDVKLLILNFGGQPAG--W------KLKEEYLPSGWKCLVCGASDS--Q---------LPP-NFIKLPKDAYTP---DFM 277 (838)
Q Consensus 221 ~~~~~Vlvs~Gs~~~~--~------~ll~~l~~~~~~~vv~G~~~~--~---------lp~-nv~~~~~~~~~p---dlL 277 (838)
.+++.|++..|+.... + ++.+.+....+.++++|...+ . .+. .+.+.+.. .+. .++
T Consensus 103 ~~~~~i~i~~~a~~~~k~wp~e~~~~l~~~l~~~~~~vvl~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~e~~ali 181 (247)
T PF01075_consen 103 KDKPYIGINPGASWPSKRWPAEKWAELIERLKERGYRVVLLGGPEEQEKEIADQIAAGLQNPVINLAGKT-SLRELAALI 181 (247)
T ss_dssp TTSSEEEEE---SSGGGS--HHHHHHHHHHHCCCT-EEEE--SSHHHHHHHHHHHHTTHTTTTEEETTTS--HHHHHHHH
T ss_pred ccCCeEEEeecCCCccccCCHHHHHHHHHHHHhhCceEEEEccchHHHHHHHHHHHHhcccceEeecCCC-CHHHHHHHH
Confidence 4677888888776542 1 334455555566677665443 1 122 34444433 344 677
Q ss_pred hhcCEEEecCChhhHHHHHHcCCcEEEEe
Q 003222 278 AASDCMLGKIGYGTVSEALAYKLPFVFVR 306 (838)
Q Consensus 278 a~adl~It~gG~~Tv~Eal~~GvP~l~iP 306 (838)
+.||++||.-. +.+.=|.+.|+|+|++=
T Consensus 182 ~~a~~~I~~Dt-g~~HlA~a~~~p~v~lf 209 (247)
T PF01075_consen 182 SRADLVIGNDT-GPMHLAAALGTPTVALF 209 (247)
T ss_dssp HTSSEEEEESS-HHHHHHHHTT--EEEEE
T ss_pred hcCCEEEecCC-hHHHHHHHHhCCEEEEe
Confidence 88999999555 78889999999999984
|
These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 9 GT9 from CAZY comprises enzymes with two known activity; lipopolysaccharide N-acetylglucosaminyltransferase (2.4.1.56 from EC), heptosyltransferase (2.4 from EC). Heptosyltransferase I is thought to add L-glycero-D-manno-heptose to the inner 3-deoxy-D-manno-octulosonic acid (Kdo) residue of the lipopolysaccharide core []. Heptosyltransferase II is a glycosyltransferase involved in the synthesis of the inner core region of lipopolysaccharide []. Lipopolysaccharide is a major component of the outer leaflet of the outer membrane in Gram-negative bacteria. It is composed of three domains; lipid A, Core oligosaccharide and the O-antigen. These enzymes transfer heptose to the lipopolysaccharide core [].; GO: 0016757 transferase activity, transferring glycosyl groups, 0008152 metabolic process; PDB: 1PSW_A 2H1F_A 2GT1_A 3TOV_A 2H1H_A. |
| >TIGR02201 heptsyl_trn_III lipopolysaccharide heptosyltransferase III, putative | Back alignment and domain information |
|---|
Probab=84.44 E-value=71 Score=35.33 Aligned_cols=84 Identities=12% Similarity=0.166 Sum_probs=51.0
Q ss_pred CCcEEEEEcCCCCc--hh------hhHHhhCCCCcEEEEeCCCC--C-----C----CCC-CeE-ECCCCC--CHHHHHh
Q 003222 222 DVKLLILNFGGQPA--GW------KLKEEYLPSGWKCLVCGASD--S-----Q----LPP-NFI-KLPKDA--YTPDFMA 278 (838)
Q Consensus 222 ~~~~Vlvs~Gs~~~--~~------~ll~~l~~~~~~~vv~G~~~--~-----~----lp~-nv~-~~~~~~--~~pdlLa 278 (838)
+++.|.+..|+... .+ ++.+.+...+..++++|... + . .+. ++. +.+..+ .+..+|+
T Consensus 180 ~~~~i~i~p~a~~~~K~Wp~e~~~~l~~~l~~~~~~ivl~g~p~~~e~~~~~~i~~~~~~~~~~~l~g~~sL~el~ali~ 259 (344)
T TIGR02201 180 GQNYIVIQPTSRWFFKCWDNDRFSALIDALHARGYEVVLTSGPDKDELAMVNEIAQGCQTPRVTSLAGKLTLPQLAALID 259 (344)
T ss_pred CCCEEEEeCCCCccccCCCHHHHHHHHHHHHhCCCeEEEecCCCHHHHHHHHHHHhhCCCCcccccCCCCCHHHHHHHHH
Confidence 45778888776543 12 33344444466677766422 1 0 122 232 233321 2336778
Q ss_pred hcCEEEecCChhhHHHHHHcCCcEEEEe
Q 003222 279 ASDCMLGKIGYGTVSEALAYKLPFVFVR 306 (838)
Q Consensus 279 ~adl~It~gG~~Tv~Eal~~GvP~l~iP 306 (838)
.||+|||.=. |.+.=|.+.|+|+|.+=
T Consensus 260 ~a~l~Vs~DS-Gp~HlAaA~g~p~v~Lf 286 (344)
T TIGR02201 260 HARLFIGVDS-VPMHMAAALGTPLVALF 286 (344)
T ss_pred hCCEEEecCC-HHHHHHHHcCCCEEEEE
Confidence 9999999644 78889999999999985
|
This family consists of examples of the putative ADP-heptose:LPS heptosyltransferase III, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria. This enzyme may be less widely distributed than heptosyltransferases I and II. |
| >PRK08057 cobalt-precorrin-6x reductase; Reviewed | Back alignment and domain information |
|---|
Probab=81.23 E-value=79 Score=33.55 Aligned_cols=84 Identities=21% Similarity=0.279 Sum_probs=46.0
Q ss_pred cEEEEEcCCCCchhhhHHhhCCCCcEE-EEeCCCC--CCC-CCCeEEC--CCCCCHH-HHHhh--cCEEEecCChh-h--
Q 003222 224 KLLILNFGGQPAGWKLKEEYLPSGWKC-LVCGASD--SQL-PPNFIKL--PKDAYTP-DFMAA--SDCMLGKIGYG-T-- 291 (838)
Q Consensus 224 ~~Vlvs~Gs~~~~~~ll~~l~~~~~~~-vv~G~~~--~~l-p~nv~~~--~~~~~~p-dlLa~--adl~It~gG~~-T-- 291 (838)
+.||++.|+.... .+... ......+ .+.-... ..+ +.|+..+ +|...+. .++.+ +|++||+-.++ .
T Consensus 128 ~~vllttGsk~l~-~f~~~-~~~~r~~~RvLP~~~s~~g~~~~~iiam~gPfs~e~n~aL~~~~~i~~lVtK~SG~~g~~ 205 (248)
T PRK08057 128 RRVLLTTGRQPLA-HFAAI-LPEHRLLVRVLPPPEVLLGLPRAEIIALRGPFSLELERALLRQHRIDVVVTKNSGGAGTE 205 (248)
T ss_pred CCEEEecCcchHH-HHhhc-CCCCEEEEEECCCchhcCCCChhhEEEeeCCCCHHHHHHHHHHcCCCEEEEcCCCchhhH
Confidence 4689999987652 12111 2222222 2221111 012 3565433 4544444 56664 99999974323 2
Q ss_pred --HHHHHHcCCcEEEEeCCC
Q 003222 292 --VSEALAYKLPFVFVRRDY 309 (838)
Q Consensus 292 --v~Eal~~GvP~l~iP~~~ 309 (838)
+.-|..+|+|+|+|-++.
T Consensus 206 eKi~AA~~lgi~vivI~RP~ 225 (248)
T PRK08057 206 AKLEAARELGIPVVMIARPA 225 (248)
T ss_pred HHHHHHHHcCCeEEEEeCCC
Confidence 345778899999999874
|
|
| >cd03788 GT1_TPS Trehalose-6-Phosphate Synthase (TPS) is a glycosyltransferase that catalyses the synthesis of alpha,alpha-1,1-trehalose-6-phosphate from glucose-6-phosphate using a UDP-glucose donor | Back alignment and domain information |
|---|
Probab=80.67 E-value=1.6 Score=50.70 Aligned_cols=68 Identities=18% Similarity=0.159 Sum_probs=49.0
Q ss_pred CHHHHHhhcCEEEec---CChh-hHHHHHHcCCc----EEEEeCCCCCChHHHHHHHHHcCcEEEEecCCCChhhHHHHH
Q 003222 272 YTPDFMAASDCMLGK---IGYG-TVSEALAYKLP----FVFVRRDYFNEEPFLRNMLEFYQGGVEMIRRDLLTGHWKPYL 343 (838)
Q Consensus 272 ~~pdlLa~adl~It~---gG~~-Tv~Eal~~GvP----~l~iP~~~~~EQ~~Na~~l~~~G~g~~l~~~~~~~~~l~~~l 343 (838)
.++.+|+.||+||.. -|+| ++.||+++|+| +|+-...+..++ ...|+.+++.+ .+.+.++|
T Consensus 353 el~~~y~~aDv~v~pS~~Eg~~lv~lEAma~g~p~~g~vV~S~~~G~~~~---------~~~g~lv~p~d--~~~la~ai 421 (460)
T cd03788 353 ELAALYRAADVALVTPLRDGMNLVAKEYVACQDDDPGVLILSEFAGAAEE---------LSGALLVNPYD--IDEVADAI 421 (460)
T ss_pred HHHHHHHhccEEEeCccccccCcccceeEEEecCCCceEEEeccccchhh---------cCCCEEECCCC--HHHHHHHH
Confidence 566889999999963 3544 78899999999 655543333333 23477788766 46899999
Q ss_pred HHHhhCC
Q 003222 344 ERAISLK 350 (838)
Q Consensus 344 ~~ll~~~ 350 (838)
.++++++
T Consensus 422 ~~~l~~~ 428 (460)
T cd03788 422 HRALTMP 428 (460)
T ss_pred HHHHcCC
Confidence 9999765
|
It is a key enzyme in the trehalose synthesis pathway. Trehalose is a nonreducing disaccharide present in a wide variety of organisms and may serve as a source of energy and carbon. It is characterized most notably in insect, plant, and microbial cells. Its production is often associated with a variety of stress conditions, including desiccation, dehydration, heat, cold, and oxidation. This family represents the catalytic domain of the TPS. Some members of this domain family coexist with a C-terminal trehalose phosphatase domain. |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 838 | ||||
| 1s4e_A | 352 | Pyrococcus Furiosus Galactokinase In Complex With G | 4e-06 | ||
| 1pie_A | 419 | Crystal Structure Of Lactococcus Lactis Galactokina | 2e-05 | ||
| 2cz9_A | 350 | Crystal Structure Of Galactokinase From Pyrococcus | 2e-05 | ||
| 1wuu_A | 399 | Crystal Structure Of Human Galactokinase Complexed | 8e-05 |
| >pdb|1S4E|A Chain A, Pyrococcus Furiosus Galactokinase In Complex With Galactose, Adp And Magnesium Length = 352 | Back alignment and structure |
|
| >pdb|1PIE|A Chain A, Crystal Structure Of Lactococcus Lactis Galactokinase Complexed With Galactose Length = 419 | Back alignment and structure |
|
| >pdb|2CZ9|A Chain A, Crystal Structure Of Galactokinase From Pyrococcus Horikoshi Length = 350 | Back alignment and structure |
|
| >pdb|1WUU|A Chain A, Crystal Structure Of Human Galactokinase Complexed With Mgamppnp And Galactose Length = 399 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >2a2c_A N-acetylgalactosamine kinase; galactokinase, , transferase; HET: NG1 ADP; 1.65A {Homo sapiens} PDB: 2a2d_A* Length = 478 | Back alignment and structure |
|---|
Score = 148 bits (376), Expect = 2e-38
Identities = 63/390 (16%), Positives = 117/390 (30%), Gaps = 50/390 (12%)
Query: 446 LHGDCQGLPDTMSFLKSLVELDIIKDSDRTPEKRQMRERKAAAGLFNWEEEIFVARAPGR 505
H + E + R ++ ++ F F RAPGR
Sbjct: 5 HHHHHHSSENLYFQGHMATESPATRRVQVAEHPRLLKLKEMFNSKFG-SIPKFYVRAPGR 63
Query: 506 LDVMGGIADYSGSLVLQMPIREACHVALQKISPSKQRLWKHALARHNDKGQGPMPVLQIV 565
++++G DY G VL M + + +A+ LQ+
Sbjct: 64 VNIIGEHIDYCGYSVLPMAVEQDVLIAV---------------EPVKTY------ALQLA 102
Query: 566 SYGSELSNRGPTFDMDLSDFMDEGKPMSYEKAKKYFDTNPSQKWAAYVAGTILVLMTELG 625
+ + P F ++ + W Y + + G
Sbjct: 103 N----TNPLYPDFSTSANNIQID---------------KTKPLWHNYFLCGLKGIQEHFG 143
Query: 626 VRFEDSISMLVSSAVPEGKGVSSSASVEVASMSAIAAAHGLNIHPRDLALLCQKVENHIV 685
+ ++ LV +P G+SSS+++ + G N+ +LA +C K E + +
Sbjct: 144 LSNLTGMNCLVDGNIPPSSGLSSSSALVCCAGLVTLTVLGRNLSKVELAEICAKSERY-I 202
Query: 686 GAPCGVMDQMASACGEANKLLAMVCQPAELLGVVEIPSHIRFWGIDSGI-RHSVGGADYG 744
G G MDQ S E + P V++PS F +S + + + +
Sbjct: 203 GTEGGGMDQSISFLAEEGTAKLIEFSPLR-ATDVKLPSGAVFVIANSCVEMNKAATSHFN 261
Query: 745 SVR------AGAFMGRKMIKSTASGMLPQSLPSSNGLNNIEPEVDGVELLEAEASLDYLC 798
A K ++ L + V L + + +C
Sbjct: 262 IRVMECRLAAKLLAKYKSLQWDKVLRLEEVQAKLGISLEEMLLVTEDALHPEPYNPEEIC 321
Query: 799 NLSPHRFEALYAKNIPESIVEHQFVILYTR 828
E L + + + + LY R
Sbjct: 322 RCLGISLEELRTQILSPNTQDVLIFKLYQR 351
|
| >3v2u_C Protein GAL3; rossmann fold, GHMP superfamily, transcription regulation, transcription; HET: GLA ATP; 2.10A {Saccharomyces cerevisiae} PDB: 3v5r_A 2aj4_A* Length = 520 | Back alignment and structure |
|---|
Score = 141 bits (357), Expect = 8e-36
Identities = 53/282 (18%), Positives = 104/282 (36%), Gaps = 49/282 (17%)
Query: 469 IKDSDRTPEKRQMRERKAAAGLFNWEEEIFVARAPGRLDVMGGIADYSGSLVLQMPIREA 528
++D R+ E++ + A ++ + + F+AR+PGR++++G DY VL + I
Sbjct: 12 VRDLPRSFEQKHLAVVDAFFQTYHVKPD-FIARSPGRVNLIGEHIDYCDFSVLPLAIDVD 70
Query: 529 CHVALQKISPSKQRLWKHALARHNDKGQGPMPVLQIVSYGSELSNRGPTFDMDLSDFMDE 588
A++ + + L+N P F D +
Sbjct: 71 MLCAVKILDEKNPSIT--------------------------LTNADPKFAQRKFDLPLD 104
Query: 589 GKPMSYEKAKKYFDTNPSQKWAAYVAGTILVLMTELGVRFEDS--------ISMLVSSAV 640
G M+ + + +W+ Y + V + L + + S +
Sbjct: 105 GSYMAIDPSVS--------EWSNYFKCGLHVAHSYLKKIAPERFNNTPLVGAQIFCQSDI 156
Query: 641 PEGKGVSSSASVEVASMSAI-AAAHGLNIHPRDLALLCQKVENHIVGAPCGVMDQMASAC 699
P G G+SS+ + A + +I +DL + E++ VG G MDQ S
Sbjct: 157 PTGGGLSSAFTCAAALATIRANMGKNFDISKKDLTRITAVAEHY-VGVNNGGMDQATSVY 215
Query: 700 GEANKLLAMVCQPAELLGVVEIPS----HIRFWGIDSGIRHS 737
GE + L + +P + P I F ++ ++ +
Sbjct: 216 GEEDHALYVEFRPKLKATPFKFPQLKNHEISFVIANTLVKSN 257
|
| >2cz9_A Probable galactokinase; structural genomics, NPPSFA, national project protein structural and functional analyses; 1.50A {Pyrococcus horikoshii} PDB: 2dei_A* 2dej_A* 1s4e_A* Length = 350 | Back alignment and structure |
|---|
Score = 135 bits (343), Expect = 5e-35
Identities = 53/250 (21%), Positives = 89/250 (35%), Gaps = 49/250 (19%)
Query: 499 VARAPGRLDVMGGIADYSGSLVLQMPIREACHVALQKISPSKQRLWKHALARHNDKGQGP 558
++PGR++++G DY+ V+ M I + A + +
Sbjct: 3 KVKSPGRVNLIGEHTDYTYGYVMPMAINLYTKIE----------------AEKHGE---- 42
Query: 559 MPVLQIVSYGSELSNRGPTFDMDLSDFMDEGKPMSYEKAKKYFDTNPSQKWAAYVAGTIL 618
+ + S + G L+D W YV G
Sbjct: 43 ---VILYS-----EHFGEERKFSLNDL------------------RKENSWIDYVKGIFW 76
Query: 619 VLMTELGVRFEDSISMLVSSAVPEGKGVSSSASVEVASMSAIAAAHGLNIHPRDLALLCQ 678
VL E I VS +P G G+SSSAS EV + + + L + LL +
Sbjct: 77 VLK-ESDYEV-GGIKGRVSGNLPLGAGLSSSASFEVGILETLDKLYNLKLDSLSKVLLAK 134
Query: 679 KVENHIVGAPCGVMDQMASACGEANKLLAMVCQPAELLGVVEIPSHIRFWGIDSGIRHSV 738
K EN VG PCG++DQ A G ++ + + + P + +G+R +
Sbjct: 135 KAENEFVGVPCGILDQFAVVFGREGNVIFLDTHTLD-YEYIPFPKDVSILVFYTGVRREL 193
Query: 739 GGADYGSVRA 748
++Y +
Sbjct: 194 ASSEYAERKH 203
|
| >1pie_A Galactokinase; galactose, galactosemia, transferase; HET: GLA; 2.10A {Lactococcus lactis} SCOP: d.14.1.5 d.58.26.7 Length = 419 | Back alignment and structure |
|---|
Score = 134 bits (340), Expect = 5e-34
Identities = 55/281 (19%), Positives = 99/281 (35%), Gaps = 43/281 (15%)
Query: 470 KDSDRTPEKRQMRE--RKAAAGLFNWEEEIFVARAPGRLDVMGGIADYSGSLVLQMPIRE 527
E + + A +F +E+ +PGR++++G DY+G V I
Sbjct: 19 SHMSIVVENSTVLSALTEKFAEVFGDTKEVEYFFSPGRINLIGEHTDYNGGYVFPASITI 78
Query: 528 ACHVALQKISPSKQRLWKHALARHNDKGQGPMPVLQIVSYGSELSNRGPTFDMDLSDFMD 587
+ K +L+ SE + + DL +
Sbjct: 79 GTTGLARLREDKKVKLY------------------------SENFPKLGVIEFDLDEV-- 112
Query: 588 EGKPMSYEKAKKYFDTNPSQKWAAYVAGTILVLMTELGVRFEDSISMLVSSAVPEGKGVS 647
+ + W+ YV G I++L G + +L+ +P G+S
Sbjct: 113 --------------EKKDGELWSNYVKGMIVMLK-GAGYEIDKGFELLIKGEIPTASGLS 157
Query: 648 SSASVEVASMSAIAAAHGLNIHPRDLALLCQKVENHIVGAPCGVMDQMASACGEANKLLA 707
SSAS+E+ + LN+ +L L QK EN +G G++DQ A GE K +
Sbjct: 158 SSASLELLVGVVLDDLFNLNVPRLELVQLGQKTENDYIGVNSGILDQFAIGFGEVKKAIE 217
Query: 708 MVCQPAELLGVVEIPSHIRFWGIDSGIRHSVGGADYGSVRA 748
+ C + V +++ ++ + Y A
Sbjct: 218 LDCNTLKYEMVPVELRDYDIVIMNTNKPRALTESKYNERFA 258
|
| >1wuu_A Galactokinase; galactosemia, GHMP superfamily, transferase; HET: GLA ANP; 2.50A {Homo sapiens} SCOP: d.14.1.5 d.58.26.7 Length = 399 | Back alignment and structure |
|---|
Score = 130 bits (328), Expect = 1e-32
Identities = 63/277 (22%), Positives = 104/277 (37%), Gaps = 42/277 (15%)
Query: 474 RTPEKRQMRE--RKAAAGLFNWEEEIFVARAPGRLDVMGGIADYSGSLVLQMPIREACHV 531
R P+ ++ R+A F E E+ APGR++++G DY+ LVL M + +
Sbjct: 12 RQPQVAELLAEARRAFREEFGAEPEL-AVSAPGRVNLIGEHTDYNQGLVLPMALELMTVL 70
Query: 532 ALQKISPSKQRLWKHALARHNDKGQGPMPVLQIVSYGSELSNRGPTFDMDLSDFMDEGKP 591
+ +++ L
Sbjct: 71 VGSPRKDGL---------------------VSLLTTSEGADEPQ-RLQFPLPT------- 101
Query: 592 MSYEKAKKYFDTNPSQKWAAYVAGTILVLMTELGVRFEDSISMLVSSAVPEGKGVSSSAS 651
+ + +WA YV G I + S +V S+VP G G+SSSAS
Sbjct: 102 ------AQRSLEPGTPRWANYVKGVIQYYP-AAPLP---GFSAVVVSSVPLGGGLSSSAS 151
Query: 652 VEVASMSAIAAAHGLNIHPRDLALLCQKVENHIVGAPCGVMDQMASACGEANKLLAMVCQ 711
+EVA+ + + + A +CQ+ E+ G PCG+MDQ S G+ L + C+
Sbjct: 152 LEVATYTFLQQLCPDSGTIAARAQVCQQAEHSFAGMPCGIMDQFISLMGQKGHALLIDCR 211
Query: 712 PAELLGVVEIPSHIRFWGIDSGIRHSVGGADYGSVRA 748
E V + +S +RHS+ ++Y R
Sbjct: 212 SLETSLVPLSDPKLAVLITNSNVRHSLASSEYPVRRR 248
|
| >1kkh_A Mevalonate kinase; mixed beta sheet, phosphate-binding loop, beta-alpha-beta, transferase; 2.40A {Methanocaldococcus jannaschii} SCOP: d.14.1.5 d.58.26.3 PDB: 1vis_A Length = 317 | Back alignment and structure |
|---|
Score = 100 bits (250), Expect = 4e-23
Identities = 29/205 (14%), Positives = 61/205 (29%), Gaps = 41/205 (20%)
Query: 498 FVARAPGRLDVMGGIADYSGSLVLQMPIREACHVALQKISPSKQRLWKHALARHNDKGQG 557
+ P ++ + G A G + M I + +++ + L
Sbjct: 6 MIIETPSKVILFGEHAVVYGYRAISMAIDLTSTIEIKETQEDEIILNL------------ 53
Query: 558 PMPVLQIVSYGSELSNRGPTFDMDLSDFMDEGKPMSYEKAKKYFDTNPSQKWAAYVAGTI 617
+ L ++E K ++ Y I
Sbjct: 54 ------------------NDLNKSLGLNLNEIKNINPNNFG----------DFKYCLCAI 85
Query: 618 LVLMTELGVRFEDSISMLVSSAVPEGKGVSSSASVEVASMSAIAAAHGLNIHPRDLALLC 677
+ L + + + +SS +P G+ SSAS+ + ++ A++ + + ++A L
Sbjct: 86 KNTLDYLNIEPKTGFKINISSKIPISCGLGSSASITIGTIKAVSGFYNKELKDDEIAKLG 145
Query: 678 QKVENHIVGAPCGVMDQMASACGEA 702
VE I G D
Sbjct: 146 YMVEKEIQGKASI-TDTSTITYKGI 169
|
| >2x7i_A Mevalonate kinase; transferase; HET: CIT; 2.20A {Staphylococcus aureus} Length = 308 | Back alignment and structure |
|---|
Score = 99.4 bits (248), Expect = 6e-23
Identities = 31/240 (12%), Positives = 70/240 (29%), Gaps = 60/240 (25%)
Query: 498 FVARAPGRLDVMGGIADYSGSLVLQMPIREACHVALQKISPSKQRLWKHALARHNDKGQG 557
+ G++ ++G A G + +P + ++ L + G
Sbjct: 7 GYGESTGKIILIGEHAVTFGEPAIAVPF-------------NAGKI--KVLIEALESGN- 50
Query: 558 PMPVLQIVSYGSELSNRGPTFDMDLSDFMDEGKPMSYEKAKKYFDTNPSQKWAAYVAGTI 617
+ SD D ++ +
Sbjct: 51 --------------------YSSIKSDVYDG----------------MLYDAPDHLKSLV 74
Query: 618 LVLMTELGVRFEDSISMLVSSAVPEGKGVSSSASVEVASMSAIAAAHGLNIHPRDLALLC 677
+ + + +++ + + +P +G+ SSA+V VA + A G ++ +L
Sbjct: 75 NRFVELNNI--TEPLAVTIQTNLPPSRGLGSSAAVAVAFVRASYDFLGKSLTKEELIEKA 132
Query: 678 QKVENHIVGAPCGVMDQMASACGEANKLLAMVCQPAELLGVVEIPSHIRFWGIDSGIRHS 737
E G P G+ Q + + Q + + ID+G++ S
Sbjct: 133 NWAEQIAHGKPSGIDTQTIVSGK------PVWFQKGHAETLKTLSLDGYMVVIDTGVKGS 186
|
| >2hfs_A Mevalonate kinase, putative; GHMP kinase, trypanosomatid parasite, transferase; 1.75A {Leishmania major} PDB: 2hfu_A* Length = 332 | Back alignment and structure |
|---|
Score = 96.7 bits (241), Expect = 7e-22
Identities = 37/256 (14%), Positives = 75/256 (29%), Gaps = 56/256 (21%)
Query: 494 EEEIFVARAPGRLDVMGGIADYSGSLVLQMPIREACHVALQKISPSKQRLWKHALARHND 553
+ G++ + G G+ + I E L +I+P
Sbjct: 10 SKTTGKNIGYGKVILFGEHFVVHGAEAIVAGISEYTECRL-EINPG-------------- 54
Query: 554 KGQGPMPVLQIVSYGSELSNRGPTFDMDLSDFMDEGKPMSYEKAKKYFDTNPSQKWAAYV 613
G ++ ++ P ++ DE K V
Sbjct: 55 ------------VPGLQVDDQRPAIPGYIAQKRDEQI-----------------KAHQLV 85
Query: 614 AGTILVLMTELGVRFEDSISMLVSSAVPEGKGVSSSASVEVASMSAIAAAHGLNIHPRDL 673
+ V ++ G++ + + G+ +SAS VA A++ + LN+ ++
Sbjct: 86 LDHLKVDLSGDGLKMF------IGGPLVPSSGIGASASDVVAFSRALSELYQLNLTDEEV 139
Query: 674 ALLCQKVENHIVGAPCGVMDQMASACGEANKLLAMVCQPAELLGV-VEIPSHIRFWGIDS 732
L E G P G + A+ L+ Q + + + + + +
Sbjct: 140 NLSAFVGEGGYHGTPSGADNTAAT----YGGLILYRRQNGKSVFKPIAFQQRLYLVVVGT 195
Query: 733 GIRHSVGGADYGSVRA 748
GI S V
Sbjct: 196 GINASTAKVVND-VHK 210
|
| >2oi2_A Mevalonate kinase; enzyme-inhibitor complex, transferase; HET: DP6; 2.50A {Streptococcus pneumoniae} Length = 292 | Back alignment and structure |
|---|
Score = 88.6 bits (220), Expect = 2e-19
Identities = 21/115 (18%), Positives = 44/115 (38%), Gaps = 6/115 (5%)
Query: 623 ELGVRFEDSISMLVSSAVPEGKGVSSSASVEVASMSAIAAAHGLNIHPRDLALLCQKVEN 682
E E I + SA+PE +G+ SSA++ +A++ A+ + ++ L +L + E
Sbjct: 66 EYLNITEACIRCEIDSAIPEKRGMGSSAAISIAAIRAVFDYYQADLPHDVLEILVNRAEM 125
Query: 683 HIVGAPCGVMDQMASACGEANKLLAMVCQPAELLGVVEIPSHIRFWGIDSGIRHS 737
P G+ + + + +E+ D+G+
Sbjct: 126 IAHMNPSGLDAKTCLSDQ------PIRFIKNVGFTELEMDLSAYLVIADTGVYGH 174
|
| >1kvk_A MK, mevalonate kinase; RMK, ATP, GHMP, transferase; HET: ATP; 2.40A {Rattus norvegicus} SCOP: d.14.1.5 d.58.26.3 PDB: 2r42_A* 2r3v_A Length = 395 | Back alignment and structure |
|---|
Score = 81.1 bits (199), Expect = 3e-16
Identities = 42/264 (15%), Positives = 86/264 (32%), Gaps = 33/264 (12%)
Query: 496 EIFVARAPGRLDVMGGIADYSGSLVLQMPIREACHVALQKISPSKQRLWKHALARHNDKG 555
E+ + APG++ + G A G + L + + + + P L K
Sbjct: 4 EVLLVSAPGKVILHGEHAVVHGKVALAVALNLRTFLV---LRPQSNGKVSLNLPNVGIKQ 60
Query: 556 QGPMPVLQIVSYGSELSNRGPTFDMDLSDFMDEGKPMSYEKAKKYFDTNPSQKWAAYVAG 615
+ LQ++ G P ++ + + + + + +A
Sbjct: 61 VWDVATLQLLDTGFLEQGDVPAPTLEQLEKLKK--------VAGLPRDCVGNEGLSLLAF 112
Query: 616 TILVLMTELGVRFEDSISMLVSSAVPEGKGVSSSASVEVASMSAIAAAHGLNIHPR---- 671
L L R S+ ++V S +P G G+ SSA+ V +A+ A +P
Sbjct: 113 LYLYLAICRKQRTLPSLDIMVWSELPPGAGLGSSAAYSVCVAAALLTACEEVTNPLKDRG 172
Query: 672 -----------DLALLCQKVENHIVGAPCGVMDQMASACGEANKLLAMVCQPAELLGVVE 720
+ + E I G P GV + +++ L + + L +
Sbjct: 173 SIGSWPEEDLKSINKWAYEGERVIHGNPSGVDNSVSTWG---GALRYQQGKMSSL----K 225
Query: 721 IPSHIRFWGIDSGIRHSVGGADYG 744
++ ++ + S G
Sbjct: 226 RLPALQILLTNTKVPRSTKALVAG 249
|
| >3k85_A D-glycero-D-manno-heptose 1-phosphate kinase; bacteriodes thetaiotaomicron, protein structure initiative II(PSI II), nysgxrc; 2.28A {Bacteroides thetaiotaomicron} Length = 357 | Back alignment and structure |
|---|
Score = 77.6 bits (191), Expect = 2e-15
Identities = 33/214 (15%), Positives = 71/214 (33%), Gaps = 51/214 (23%)
Query: 497 IFVARAPGRLDVMGG------IADYSGSLVLQMPIREACHVALQKISPSKQRLWKHALAR 550
+ ++AP RL + GG +D G L+L I + +++ + + +
Sbjct: 3 LVRSKAPLRLGLAGGGSDVSPYSDIYGGLILNATINLYAYCTIEETNSGRIEI------- 55
Query: 551 HNDKGQGPMPVLQIVSYGSELSNRGPTFDMDLSDFMDEGKPMSYEKAKKYFDTNPSQKWA 610
+ D +S + + A
Sbjct: 56 ------------------------------NAYDAQCCKSYLSMSQLEID-------GEA 78
Query: 611 AYVAGTILVLMTELGVRFEDSISMLVSSAVPEGKGVSSSASVEVASMSAIAAAHGLNIHP 670
+ + G ++ + + S + + P G G+ +S+++ V + A L +
Sbjct: 79 SLIKGVYNRIIRDYRL-EPKSFKITTYNDAPAGSGLGTSSTMVVCILKAFIEWLSLPLGD 137
Query: 671 RDLALLCQKVENHIVGAPCGVMDQMASACGEANK 704
+ + L ++E +G G DQ A+A G N
Sbjct: 138 YETSRLAYEIERKDLGLSGGKQDQYAAAFGGFNY 171
|
| >3k17_A LIN0012 protein; protein structure initiative II(PSI II), NYSGXRC, structural genomics, NEW YORK SGX research center for structural genomics; HET: PGE; 2.10A {Listeria innocua} Length = 365 | Back alignment and structure |
|---|
Score = 57.3 bits (138), Expect = 9e-09
Identities = 29/210 (13%), Positives = 55/210 (26%), Gaps = 53/210 (25%)
Query: 498 FVARAPGRLDVMGGIAD-YSGSLVLQMPIREACHVALQKISPSKQRLWKHALARHNDKGQ 556
+ PG+L V G A SG + + + L+ ++ +
Sbjct: 7 LQVKIPGKLYVAGEYAVVESGHTAILTAVNRYITLTLEDSERNELWI------------- 53
Query: 557 GPMPVLQIVSYGSELSNRGPTFDMDLSDFMDEGKPMSYEKAKKYFDTNPSQKWAAYVAGT 616
P ++ +S + + P + + A
Sbjct: 54 -------------------PHYENPVSWPIGG-------------ELKPDGEHWTFTAEA 81
Query: 617 ILVLMTELGVR------FEDSISMLVSSAVPEGKGVSSSASVEVASMSAIAAAHGLNIHP 670
I + T L + I + G+ SSA+ VA ++A+ I
Sbjct: 82 INIATTFLKSEGIELTPVKMVIETELIDQSGAKYGLGSSAAATVAVINALMTKFYPEISM 141
Query: 671 RDLALLCQKVENHIVGAPCGVMDQMASACG 700
L + G D + G
Sbjct: 142 LKKFKLAALSHLVVQGNGSC-GDIASCMYG 170
|
| >2iya_A OLEI, oleandomycin glycosyltransferase; carbohydrate, glycosylation, enzyme, macrolide; HET: UDP ZIO; 1.7A {Streptomyces antibioticus} Length = 424 | Back alignment and structure |
|---|
Score = 54.0 bits (130), Expect = 1e-07
Identities = 24/155 (15%), Positives = 49/155 (31%), Gaps = 9/155 (5%)
Query: 10 SASSKHLVFAYYVTGHGFGHATRVVEVVRNLISAGHDVHVVTGAPDFVFTSEIQSPRLFI 69
S + +H+ F G GH + +V+ L++ GH V F +++++
Sbjct: 9 SVTPRHISF---FNIPGHGHVNPSLGIVQELVARGHRVSYAITDE---FAAQVKAAGA-- 60
Query: 70 RKVLLDCGAVQADALTVDRLASLEKYSETAVAPRKSILKDEVEWLNSIKADLVVSDVVPV 129
V+ D + E + +L + + DL+V D+
Sbjct: 61 TPVVYDSILPKESNPEESWPEDQESAMGLFLDEAVRVLPQLEDAYADDRPDLIVYDIASW 120
Query: 130 ACRAAADA-GIRSVCVTNFSWDFIYAEYVMAAGHH 163
I V ++ + E + A
Sbjct: 121 PAPVLGRKWDIPFVQLSPTFVAYEGFEEDVPAVQD 155
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 53.7 bits (128), Expect = 2e-07
Identities = 76/540 (14%), Positives = 139/540 (25%), Gaps = 173/540 (32%)
Query: 21 YVTGHG---FGHATRVVEVVRNLISAGHDVHVVTGAPDFVF---TSEIQSPRLFIRKVLL 74
V G G ++V V +F SP + +
Sbjct: 152 NVLIDGVLGSGKTWVALDVCL-------SYKVQCKMDFKIFWLNLKNCNSPETVLEMLQK 204
Query: 75 DCGAVQADALTVDRLASLEKYSETAVAPRKSILKDEVEWLNSIKADLVVSDVVPVACRAA 134
+ + + +S K ++ L + N + LV+ +V
Sbjct: 205 LLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCL---LVLLNV-------- 253
Query: 135 ADAGIRSVCVTNFSWDFIYAEYVMAAGHHHRSIVWQIAEDYS-HCEFLI--RLPGYCPMP 191
+ + ++ C+ L+ R
Sbjct: 254 --------------QN------------------AKAWNAFNLSCKILLTTR-------- 273
Query: 192 AFRDVIDVPLVVRRLHKSRKEVRKELGIEDDVKLLILNFGGQPAGWKLKEEYL---P--- 245
F+ V D H S L D+VK L+L + L E L P
Sbjct: 274 -FKQVTDFLSAATTTHISLDHHSMTLT-PDEVKSLLLKYLDCRPQ-DLPREVLTTNPRRL 330
Query: 246 --------------SGWKCLVC-------GASDSQLPPN-----FIKL---PKDAYTPDF 276
WK + C +S + L P F +L P A+ P
Sbjct: 331 SIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPT- 389
Query: 277 MAASDCMLGKIGYGTVSEALAYKLPFVFVRRDYFNEEPFLRNMLEFYQGGVEMIRRDLLT 336
+ + + + + ++ ++ + L+
Sbjct: 390 --------------ILLSLIWFDVIK---------SDV--MVVVN------KLHKYSLVE 418
Query: 337 GHWKPYLERAISLKPCY--EGGINGGEVAAH--ILQETAIGKNYASDKLSGARRLRDAII 392
K IS+ Y E A H I+ I K + SD L D
Sbjct: 419 KQPKEST---ISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPY--LDQYF 473
Query: 393 F---GYELQRV--PGRDVSIPEWYQTAED----ELGLSASRSPPCTPEGDSTVKLSTEDF 443
+ G+ L+ + P R + D E + + + +
Sbjct: 474 YSHIGHHLKNIEHPERMTLFRMVFL---DFRFLEQKIRHDSTAWNASGSILNTLQQLKFY 530
Query: 444 E--ILHGDC---QGLPDTMSFLKSLVELDIIKDSDRTPEKRQMRERKAAAGLFNWEEEIF 498
+ I D + + + FL +E ++I + +R L +E IF
Sbjct: 531 KPYICDNDPKYERLVNAILDFLPK-IEENLI----CSKYTDLLR-----IALMAEDEAIF 580
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 47.5 bits (112), Expect = 2e-05
Identities = 68/456 (14%), Positives = 130/456 (28%), Gaps = 111/456 (24%)
Query: 320 LEFYQGGVEMIRRDLLTGHWKPYLERAISLK--PCYEGGINGGEVAAHILQETAIGKNYA 377
++F G + +D+L+ ++ K I E HI+
Sbjct: 7 MDFETGEHQYQYKDILS-VFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMS-------- 57
Query: 378 SDKLSGARRLRDAIIFGYELQRVPGRDVSIPEWYQTAEDELG------LSASRSPPCTPE 431
D +SG RL L V + E+ L +S ++ P
Sbjct: 58 KDAVSGTLRLFWT------LLSKQEEMV-----QKFVEEVLRINYKFLMSPIKTEQRQPS 106
Query: 432 GDSTVKLSTEDFEILHGDCQGLPDTMSFLKSLVELDIIKDSDRTPEKRQMRERKAAAGLF 491
+ + + D L+ D Q F K V R ++R+ L
Sbjct: 107 MMTRMYIEQRD--RLYNDNQ------VFAKYNVS--------RLQPYLKLRQ-----ALL 145
Query: 492 NWEEEIFVARAPGRLDVMGGIADYSGSLVLQMPIREACHVALQKISPSKQRLWKHALARH 551
V +D + G SG + + C + + W + L
Sbjct: 146 ELRPAKNVL-----IDGVLG----SGKTWV---ALDVCLSYKVQCKMDFKIFWLN-LKNC 192
Query: 552 NDKGQGPMPV----LQIVSYGSELSNRGPTFDMDLSDFMDEGKPMSYEKAKKYF------ 601
N + QI + S+ + + E + K+K Y
Sbjct: 193 NSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELR--RLLKSKPYENCLLVL 250
Query: 602 -DTNPSQKWAAYVAG-TILVLMTELGV-RFEDSISMLVSSAVPEGKGVSSSASVEVASMS 658
+ ++ W A+ IL+ V F + + S ++ +
Sbjct: 251 LNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKY 310
Query: 659 AIAAAHGL-----NIHPRDLALLCQKVENHI--------VGAPCGVMDQMASACGEANKL 705
L +PR L+++ + + + + V D++ + + +
Sbjct: 311 LDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNC-----DKLTTIIESSLNV 365
Query: 706 LAMVCQPAEL------LGV----VEIPSHI--RFWG 729
L +PAE L V IP+ + W
Sbjct: 366 L----EPAEYRKMFDRLSVFPPSAHIPTILLSLIWF 397
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 45.6 bits (107), Expect = 7e-05
Identities = 71/467 (15%), Positives = 125/467 (26%), Gaps = 170/467 (36%)
Query: 441 EDFEILHGDCQGLPDTMSFLKSLVELD-IIKDSDRTPEKRQMRERKAAAGLFNW-----E 494
++F DC+ + D + S E+D II D +R LF W +
Sbjct: 31 DNF-----DCKDVQDMPKSILSKEEIDHIIMSKDA--VSGTLR-------LF-WTLLSKQ 75
Query: 495 EEI---FVARAPGRLDVMGGIADYSGSLVLQMPIREACHVALQKISPSKQRLWKHALARH 551
EE+ FV L +Y L PI+ PS
Sbjct: 76 EEMVQKFVEEV---LR-----INYK---FLMSPIKTEQ------RQPS------------ 106
Query: 552 NDKGQGPMPVLQIVSYGSELSNRGPTFDMDLSDFMDEGKPMSYEKAKKYFDTNPSQKWAA 611
M + L N F KY +
Sbjct: 107 -------MMTRMYIEQRDRLYNDNQVF-------------------AKYNVSRLQP---- 136
Query: 612 YVAGTILVLMTEL-GVRFEDSIS---MLVSSAVPEGKGVSSSASVEVASMSAIAAAHGLN 667
L L L +R ++ +L S GK + +++V +
Sbjct: 137 -----YLKLRQALLELRPAKNVLIDGVLGS-----GK---TWVALDVCLSYKVQCKMDFK 183
Query: 668 IH---------PRDLALLCQKVENHIVGAPCGVMDQMA-------SACGEANKLLAMVCQ 711
I P + + QK+ I D + S E +LL
Sbjct: 184 IFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPY 243
Query: 712 PAELLGV---VEIPSHIRFWGI---------DSGIRHSVGGADYGSVR----AGAFMGRK 755
LL V V+ + + + + A + + +
Sbjct: 244 ENCLL-VLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDE 302
Query: 756 MIK--STASGMLPQSLPS-----------------SNGLNNIE--PEVDGVELLEA-EAS 793
+ PQ LP +GL + V+ +L E+S
Sbjct: 303 VKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESS 362
Query: 794 LDYLCNLSPHRFEALYAK--------NIPESIVEHQFVILYTRISES 832
L+ L P + ++ + +IP ++ +++ + +S
Sbjct: 363 LN---VLEPAEYRKMFDRLSVFPPSAHIPTILLS----LIWFDVIKS 402
|
| >2iyf_A OLED, oleandomycin glycosyltransferase; antibiotic resistance, glycosylation, enzyme, macrolide, carbohydrate; HET: ERY UDP; 1.7A {Streptomyces antibioticus} Length = 430 | Back alignment and structure |
|---|
Score = 51.3 bits (123), Expect = 7e-07
Identities = 34/170 (20%), Positives = 54/170 (31%), Gaps = 7/170 (4%)
Query: 26 GFGHATRVVEVVRNLISAGHDVHVVTGAPDFVFTSEIQSPRLFIRKVLLDCGAVQADALT 85
GH +EV+R L++ GH V F ++ + R VL DA
Sbjct: 17 AHGHVNPSLEVIRELVARGHRVTYAIPPV---FADKVAATGP--RPVLYHSTLPGPDADP 71
Query: 86 VDRLASLEKYSETAVAPRKSILKDEVEWLNSIKADLVVSDVVPVACRAAADA-GIRSVCV 144
++L E + L + DLV+ D+ R A G+ +V +
Sbjct: 72 EAWGSTLLDNVEPFLNDAIQALPQLADAYADDIPDLVLHDITSYPARVLARRWGVPAVSL 131
Query: 145 -TNFSWDFIYAEYVMAAGHHHRSIVWQIAEDYSHCEFLIRLPGYCPMPAF 193
N Y E V + Y+ E ++ G P
Sbjct: 132 SPNLVAWKGYEEEVAEPMWREPRQTERGRAYYARFEAWLKENGITEHPDT 181
|
| >3otg_A CALG1; calicheamicin, TDP, structural genomics, PSI-2, protein STRU initiative, center for eukaryotic structural genomics, CESG fold; HET: TYD; 2.08A {Micromonospora echinospora} PDB: 3oth_A* Length = 412 | Back alignment and structure |
|---|
Score = 47.0 bits (112), Expect = 2e-05
Identities = 25/131 (19%), Positives = 50/131 (38%), Gaps = 13/131 (9%)
Query: 26 GFGHATRVVEVVRNLISAGHDVHVVTGAPDFV----------FTSEIQSPRLFIRKVLLD 75
GH ++ + +AGH+V TG F + + F+ + +
Sbjct: 30 THGHTYPLLPLATAARAAGHEVTFATG-EGFAGTLRKLGFEPVATGMPVFDGFLAALRIR 88
Query: 76 CGAVQADALTVDRLASLEKYSETAVAPRKSILKDEVEWLNSIKADLVVSDVVPVACRAAA 135
+ LT ++L+ L + V P+ + + + ++ DLVV ++ AA
Sbjct: 89 FDTDSPEGLTPEQLSELPQIVFGRVIPQ-RVFDELQPVIERLRPDLVVQEISNYGAGLAA 147
Query: 136 DA-GIRSVCVT 145
GI ++C
Sbjct: 148 LKAGIPTICHG 158
|
| >3oti_A CALG3; calicheamicin, TDP, structural genomics, PSI-2, protein STRU initiative, center for eukaryotic structural genomics, CESG fold; HET: TYD C0T; 1.60A {Micromonospora echinospora} PDB: 3d0q_A* 3d0r_A* Length = 398 | Back alignment and structure |
|---|
Score = 44.4 bits (105), Expect = 1e-04
Identities = 27/139 (19%), Positives = 52/139 (37%), Gaps = 11/139 (7%)
Query: 22 VTGHGFGHATRVVEVVRNLISAGHDVHVVTGAP---------DFVFTSEIQSPRLFIRKV 72
V+ G GH ++++ +AGHDV + + V + S +V
Sbjct: 26 VSSPGIGHLFPLIQLAWGFRTAGHDVLIAVAEHADRAAAAGLEVVDVAPDYSAVKVFEQV 85
Query: 73 LLDCGAVQADALTVDRLASLEKYSETAVAPRKSILKDEVEWLNSIKADLVVSDVVPVACR 132
D A+ + LE++ A + ++ + ++ + DLVV +
Sbjct: 86 AKD-NPRFAETVATRPAIDLEEWGVQIAAVNRPLVDGTMALVDDYRPDLVVYEQGATVGL 144
Query: 133 AAADA-GIRSVCVTNFSWD 150
AAD G+ +V +W
Sbjct: 145 LAADRAGVPAVQRNQSAWR 163
|
| >3tsa_A SPNG, NDP-rhamnosyltransferase; glycosyltransferase; HET: GLC; 1.70A {Saccharopolyspora spinosa} PDB: 3uyk_A* 3uyl_A* Length = 391 | Back alignment and structure |
|---|
Score = 44.4 bits (105), Expect = 1e-04
Identities = 38/310 (12%), Positives = 78/310 (25%), Gaps = 38/310 (12%)
Query: 26 GFGHATRVVEVVRNLISAGHDVHVVTGAPDFV------------FTSEIQSPRLFIRKVL 73
H +V + L ++GH+V + P+ ++ L
Sbjct: 11 YPTHLMAMVPLCWALQASGHEVLIAAP-PELQATAHGAGLTTAGIRGNDRTGDTGGTTQL 69
Query: 74 LDCGAVQADALTVDRLASLEKYSETAVAPRKSILKDEVEWLNSIKADLVVSDVVPVACRA 133
T E+ + L + + + + +++ DV + R
Sbjct: 70 RFPNPAFGQRDTEAGRQLWEQTASNVAQSSLDQLPEYLRLAEAWRPSVLLVDVCALIGRV 129
Query: 134 AADA-GIRSVCVTNFSWDFIYAEYVMAAGHHHRSIVWQIAEDYSHCEFLIRLPGYCPMPA 192
+ V + D + A + LI P + A
Sbjct: 130 LGGLLDLPVVLHR-WGVDPTAGPFSDRAHELLDPVCRHHGLTGLPTPELILDPCPPSLQA 188
Query: 193 FRDVIDVPLVVRRLHKSRKEVRKELGIEDDVKLLILNFGGQPAGWKLKEEYLP------- 245
P+ + S + + + G L
Sbjct: 189 SDAPQGAPVQYVPYNGSG-AFPAWGAARTSARRVCICMGRMVLNATGPAPLLRAVAAATE 247
Query: 246 -SGWKCLVCG-----ASDSQLPPNFIKLPKDAYTP--DFMAASDCML--GKIGYGTVSEA 295
G + ++ A + LP N P F+ + ++ G G GT A
Sbjct: 248 LPGVEAVIAVPPEHRALLTDLPDNARIAE---SVPLNLFLRTCELVICAG--GSGTAFTA 302
Query: 296 LAYKLPFVFV 305
+P + +
Sbjct: 303 TRLGIPQLVL 312
|
| >4fzr_A SSFS6; structural genomics, PSI-biology, protein structure initiati enzyme discovery for natural product biosynthesis, natPro; 2.40A {Streptomyces SP} PDB: 4g2t_A* Length = 398 | Back alignment and structure |
|---|
Score = 42.8 bits (101), Expect = 4e-04
Identities = 25/144 (17%), Positives = 44/144 (30%), Gaps = 16/144 (11%)
Query: 28 GHATRVVEVVRNLISAGHDVHVVTGAPDFVFTSEIQS---------PRLFIRKVLLDCGA 78
G +V + L +AGH+V V + P L + +VL
Sbjct: 27 GFVMPLVPLSWALRAAGHEVLVAASEN---MGPTVTGAGLPFAPTCPSLDMPEVLSWDRE 83
Query: 79 VQADALTVDRLASLEKYSETAVAPRKSILKDEVEWLNSIKADLVVSDVVPVACRAAADA- 137
+ + LE + + + K DLV+++ + A
Sbjct: 84 GNRTTMPREEKPLLEHIGRGYGRLVLRMRDEALALAERWKPDLVLTETYSLTGPLVAATL 143
Query: 138 GIRSVCVTNFSWDFIYAEYVMAAG 161
GI + S E + +AG
Sbjct: 144 GIPWIEQ---SIRLASPELIKSAG 164
|
| >2p6p_A Glycosyl transferase; X-RAY-diffraction,urdamycina-biosynthesis; 1.88A {Streptomyces fradiae} Length = 384 | Back alignment and structure |
|---|
Score = 42.5 bits (100), Expect = 4e-04
Identities = 21/140 (15%), Positives = 44/140 (31%), Gaps = 11/140 (7%)
Query: 28 GHATRVVEVVRNLISAGHDVHVVTGAPDFVFTSE------IQSPRLFIRKVLLDCGAVQA 81
+ + +AGH V + D + + L IR + +
Sbjct: 12 ATVFALAPLATAARNAGHQVVMAAN-QDMGPVVTGVGLPAVATTDLPIRHFITTDREGRP 70
Query: 82 DALTVDRLASLEKYSETAVAPRKSILKDEVEWLNSIKADLVVSDVVPVACRAAADA-GIR 140
+A+ D +A S L +++ + + DL+V + A G+
Sbjct: 71 EAIPSDPVAQARFTGRWFARMAASSLPRMLDFSRAWRPDLIVGGTMSYVAPLLALHLGVP 130
Query: 141 SVCVTNFSWDFIYAEYVMAA 160
+WD + A+ +
Sbjct: 131 HARQ---TWDAVDADGIHPG 147
|
| >2gs8_A Mevalonate pyrophosphate decarboxylase; streptococcus pyogen structural genomics, PSI, protein structure initiative; HET: MSE; 1.50A {Streptococcus pyogenes m1 gas} Length = 317 | Back alignment and structure |
|---|
Score = 42.2 bits (98), Expect = 5e-04
Identities = 15/108 (13%), Positives = 39/108 (36%), Gaps = 4/108 (3%)
Query: 617 ILVLMTELGVRFEDSISMLVSSAVPEGKGVSSSASVEVASMSAIAAAHGLNIHPRDLALL 676
I ++ + + + M + +P G+SSS+S A + A + + LA
Sbjct: 78 ISAIIDQFRQPGQAFVKMETQNNMPTAAGLSSSSSGLSALVKACDQLFDTQLDQKALAQK 137
Query: 677 CQKVENHIVGAPCGVMDQMASACGEANKLLAMVCQPAELLGVVEIPSH 724
+ G+ +A + + + V ++ ++ + +
Sbjct: 138 AK----FASGSSSRSFFGPVAAWDKDSGAIYKVETDLKMAMIMLVLNA 181
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 838 | |||
| 3v2u_C | 520 | Protein GAL3; rossmann fold, GHMP superfamily, tra | 100.0 | |
| 1pie_A | 419 | Galactokinase; galactose, galactosemia, transferas | 100.0 | |
| 2a2c_A | 478 | N-acetylgalactosamine kinase; galactokinase, , tra | 100.0 | |
| 1wuu_A | 399 | Galactokinase; galactosemia, GHMP superfamily, tra | 99.98 | |
| 3k85_A | 357 | D-glycero-D-manno-heptose 1-phosphate kinase; bact | 99.97 | |
| 2cz9_A | 350 | Probable galactokinase; structural genomics, NPPSF | 99.97 | |
| 3s2u_A | 365 | UDP-N-acetylglucosamine--N-acetylmuramyl-(pentape | 99.95 | |
| 4amg_A | 400 | Snogd; transferase, polyketide biosynthesis, GT1 f | 99.95 | |
| 3k17_A | 365 | LIN0012 protein; protein structure initiative II(P | 99.95 | |
| 2pg9_A | 337 | Phosphomevalonate kinase; GHMP kinase superfamily, | 99.95 | |
| 2iya_A | 424 | OLEI, oleandomycin glycosyltransferase; carbohydra | 99.95 | |
| 1kvk_A | 395 | MK, mevalonate kinase; RMK, ATP, GHMP, transferase | 99.94 | |
| 3rsc_A | 415 | CALG2; TDP, enediyne, structural genomics, PSI-2, | 99.94 | |
| 3ia7_A | 402 | CALG4; glycosysltransferase, calicheamicin, enediy | 99.94 | |
| 1iir_A | 415 | Glycosyltransferase GTFB; rossmann fold; 1.80A {Am | 99.93 | |
| 3h4t_A | 404 | Glycosyltransferase GTFA, glycosyltransferase; van | 99.93 | |
| 4fzr_A | 398 | SSFS6; structural genomics, PSI-biology, protein s | 99.93 | |
| 1rrv_A | 416 | Glycosyltransferase GTFD; GT-B, glycosyltransferas | 99.93 | |
| 2yjn_A | 441 | ERYCIII, glycosyltransferase; transferase, cytochr | 99.93 | |
| 3hbf_A | 454 | Flavonoid 3-O-glucosyltransferase; glycosyltransfe | 99.92 | |
| 3oti_A | 398 | CALG3; calicheamicin, TDP, structural genomics, PS | 99.92 | |
| 2vch_A | 480 | Hydroquinone glucosyltransferase; glycosyltransfer | 99.92 | |
| 3tsa_A | 391 | SPNG, NDP-rhamnosyltransferase; glycosyltransferas | 99.91 | |
| 2c1x_A | 456 | UDP-glucose flavonoid 3-O glycosyltransferase; WIN | 99.91 | |
| 2pq6_A | 482 | UDP-glucuronosyl/UDP-glucosyltransferase; glycosyl | 99.91 | |
| 3gon_A | 335 | Phosphomevalonate kinase; GHMP kinase superfamily, | 99.91 | |
| 2iyf_A | 430 | OLED, oleandomycin glycosyltransferase; antibiotic | 99.91 | |
| 2p6p_A | 384 | Glycosyl transferase; X-RAY-diffraction,urdamycina | 99.91 | |
| 2x7i_A | 308 | Mevalonate kinase; transferase; HET: CIT; 2.20A {S | 99.91 | |
| 4hac_A | 321 | Mevalonate kinase; GHMP, ATP binding, phosphorylat | 99.9 | |
| 3otg_A | 412 | CALG1; calicheamicin, TDP, structural genomics, PS | 99.9 | |
| 2acv_A | 463 | Triterpene UDP-glucosyl transferase UGT71G1; glyco | 99.9 | |
| 2hfs_A | 332 | Mevalonate kinase, putative; GHMP kinase, trypanos | 99.89 | |
| 1kkh_A | 317 | Mevalonate kinase; mixed beta sheet, phosphate-bin | 99.89 | |
| 2oi2_A | 292 | Mevalonate kinase; enzyme-inhibitor complex, trans | 99.85 | |
| 1f0k_A | 364 | MURG, UDP-N-acetylglucosamine-N-acetylmuramyl- (pe | 99.81 | |
| 3hbm_A | 282 | UDP-sugar hydrolase; PSEG; 1.80A {Campylobacter je | 99.8 | |
| 1h72_C | 296 | HK, homoserine kinase; transferase, threonine bios | 99.77 | |
| 2ww4_A | 283 | 4-diphosphocytidyl-2C-methyl-D-erythritol kinase; | 99.75 | |
| 2v8p_A | 271 | 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; | 99.71 | |
| 2o6l_A | 170 | UDP-glucuronosyltransferase 2B7; drug metabolism, | 99.7 | |
| 2gs8_A | 317 | Mevalonate pyrophosphate decarboxylase; streptococ | 99.64 | |
| 1uek_A | 275 | 4-(cytidine 5'-diphospho)-2C-methyl-D-erythritol k | 99.58 | |
| 3pyf_A | 306 | 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; | 99.51 | |
| 3qt5_A | 332 | Mevalonate diphosphate decarboxylase; GHMP kinase | 99.51 | |
| 2jzc_A | 224 | UDP-N-acetylglucosamine transferase subunit ALG13; | 99.47 | |
| 1fi4_A | 416 | Mevalonate 5-diphosphate decarboxylase; mixed alph | 99.28 | |
| 3okp_A | 394 | GDP-mannose-dependent alpha-(1-6)-phosphatidylino | 99.27 | |
| 3c48_A | 438 | Predicted glycosyltransferases; retaining glycosyl | 99.26 | |
| 2jjm_A | 394 | Glycosyl transferase, group 1 family protein; anth | 99.24 | |
| 3fro_A | 439 | GLGA glycogen synthase; glycosyltransferase family | 99.23 | |
| 3dzc_A | 396 | UDP-N-acetylglucosamine 2-epimerase; structural ge | 99.2 | |
| 3ot5_A | 403 | UDP-N-acetylglucosamine 2-epimerase; structural ge | 99.19 | |
| 2iw1_A | 374 | Lipopolysaccharide core biosynthesis protein RFAG; | 99.18 | |
| 2x6q_A | 416 | Trehalose-synthase TRET; biosynthetic protein; 2.2 | 99.15 | |
| 1vgv_A | 384 | UDP-N-acetylglucosamine 2-epimerase; structural ge | 99.12 | |
| 3hul_A | 298 | HSK, HK, homoserine kinase; structural genomics, p | 99.11 | |
| 2r60_A | 499 | Glycosyl transferase, group 1; rossmann-fold; 1.80 | 99.02 | |
| 1v4v_A | 376 | UDP-N-acetylglucosamine 2-epimerase; UDP-GLCNAC, t | 99.0 | |
| 2iuy_A | 342 | Avigt4, glycosyltransferase; antibiotics, family G | 98.97 | |
| 2gek_A | 406 | Phosphatidylinositol mannosyltransferase (PIMA); G | 98.95 | |
| 3beo_A | 375 | UDP-N-acetylglucosamine 2-epimerase; UDP-GLCNAC, a | 98.78 | |
| 1rzu_A | 485 | Glycogen synthase 1; glycosyl-transferase, GT-B fo | 98.77 | |
| 4hwg_A | 385 | UDP-N-acetylglucosamine 2-epimerase; ssgcid, struc | 98.75 | |
| 2qzs_A | 485 | Glycogen synthase; glycosyl-transferase, GT-B fold | 98.61 | |
| 2hy7_A | 406 | Glucuronosyltransferase GUMK; glycosyltransferases | 98.57 | |
| 3oy2_A | 413 | Glycosyltransferase B736L; rossmann fold, GDP-mann | 98.52 | |
| 3s28_A | 816 | Sucrose synthase 1; glycosyltransferase, sucrose m | 98.43 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 98.42 | |
| 3lto_A | 323 | Mevalonate diphosphate decarboxylase; protein stru | 98.42 | |
| 2hke_A | 380 | Diphosphomevalonate decarboxylase, putative; meval | 98.37 | |
| 2x0d_A | 413 | WSAF; GT4 family, transferase; HET: MSE; 2.28A {Ge | 98.33 | |
| 2xci_A | 374 | KDO-transferase, 3-deoxy-D-manno-2-octulosonic aci | 98.17 | |
| 2f9f_A | 177 | First mannosyl transferase (WBAZ-1); alpha-beta pr | 97.98 | |
| 2bfw_A | 200 | GLGA glycogen synthase; glycosyltransferase family | 97.84 | |
| 3f0n_A | 414 | Mevalonate pyrophosphate decarboxylase; cholestero | 97.69 | |
| 3qhp_A | 166 | Type 1 capsular polysaccharide biosynthesis prote | 96.99 | |
| 3tov_A | 349 | Glycosyl transferase family 9; structural genomics | 96.98 | |
| 1psw_A | 348 | ADP-heptose LPS heptosyltransferase II; structural | 96.83 | |
| 3rhz_A | 339 | GTF3, nucleotide sugar synthetase-like protein; gl | 95.84 | |
| 3vue_A | 536 | GBSS-I, granule-bound starch synthase 1, chloropla | 95.69 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 88.43 | |
| 3q3e_A | 631 | HMW1C-like glycosyltransferase; N-glycosylation; 2 | 87.31 | |
| 2wqk_A | 251 | 5'-nucleotidase SURE; SURE protein, putative acid | 84.61 | |
| 1uqt_A | 482 | Alpha, alpha-trehalose-phosphate synthase; glycosy | 83.87 | |
| 3nb0_A | 725 | Glycogen [starch] synthase isoform 2; glycogen syn | 82.07 |
| >3v2u_C Protein GAL3; rossmann fold, GHMP superfamily, transcription regulation, transcription; HET: GLA ATP; 2.10A {Saccharomyces cerevisiae} PDB: 3v5r_A 2aj4_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-40 Score=378.42 Aligned_cols=237 Identities=21% Similarity=0.337 Sum_probs=191.2
Q ss_pred HHHHHhccCCCCCceEEEEccccccccccccccCCCeeeccccccceEEEEEEc--CCccchhhhhhhhccCCCCCCCCC
Q 003222 483 ERKAAAGLFNWEEEIFVARAPGRLDVMGGIADYSGSLVLQMPIREACHVALQKI--SPSKQRLWKHALARHNDKGQGPMP 560 (838)
Q Consensus 483 ~~~~~~~~f~~~~~~~~~~APGRv~L~GeH~Dy~gg~vl~~ai~~~~~v~~~~~--~d~~~~l~~~~~~~~~~~~~~~~~ 560 (838)
....+...||.+ +.++++|||||||||||||||||+||||||+++|+++++++ +|++++++
T Consensus 26 l~~~F~~~fg~~-p~~v~~APGRVnLiGEHtDyngG~VLp~AI~~~~~vav~~~~~~d~~i~i~---------------- 88 (520)
T 3v2u_C 26 VVDAFFQTYHVK-PDFIARSPGRVNLIGEHIDYCDFSVLPLAIDVDMLCAVKILDEKNPSITLT---------------- 88 (520)
T ss_dssp HHHHHHHHHSSC-CSEEEEEEEEEEEECTTCGGGTCCBEEEEEEEEEEEEEEECCCSSCEEEEE----------------
T ss_pred HHHHHHHHhCCC-CCEEEEcceeEEEeccCeeeCCCEEEEEEeecceEEEEEeccCCCCEEEEE----------------
Confidence 344577899964 55789999999999999999999999999999999999998 66655554
Q ss_pred eEEEEecccccCCCCCceeccCCccccCCCCcchhhhhcccCCCCCCChhHHHHHHHHH---HHHHh------CCCCCCC
Q 003222 561 VLQIVSYGSELSNRGPTFDMDLSDFMDEGKPMSYEKAKKYFDTNPSQKWAAYVAGTILV---LMTEL------GVRFEDS 631 (838)
Q Consensus 561 ~i~i~s~~~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~~~~~~w~~y~~g~i~~---~~~~~------g~~~~~g 631 (838)
|.+..+. ...|++++++. ++..+ .....|+||++|++.. ++++. |..+ .|
T Consensus 89 -----S~~~~~~--~~~~~l~~~~~-----~~~i~--------~~~~~W~~Yv~g~i~~v~~~l~~~~~~~~~g~~~-~G 147 (520)
T 3v2u_C 89 -----NADPKFA--QRKFDLPLDGS-----YMAID--------PSVSEWSNYFKCGLHVAHSYLKKIAPERFNNTPL-VG 147 (520)
T ss_dssp -----ESSTTSC--CEEEECCTTCC-----CCCCC--------TTSCCHHHHHHHHHHHHHHHHHHHCHHHHSSSCC-CC
T ss_pred -----ECCCCCC--ceEEEeccCcc-----ccccC--------cccccHHHHHHHHHHHHHHHHHhhcccccccCCC-Cc
Confidence 3221110 01233322220 01110 1236899999997633 34332 3344 79
Q ss_pred EEEEEEeCCCCCCCCChHHHHHHHHHHHHHHHh---CCCCCHHHHHHHHHHHHhhhcCCCCChhhHHHhhcCCCCeEEEE
Q 003222 632 ISMLVSSAVPEGKGVSSSASVEVASMSAIAAAH---GLNIHPRDLALLCQKVENHIVGAPCGVMDQMASACGEANKLLAM 708 (838)
Q Consensus 632 ~~i~i~s~iP~g~GLgSSAA~~va~~~al~~l~---~~~l~~~ela~~a~~~E~~~~G~~~G~mDq~a~~~G~~~~~l~~ 708 (838)
|++.|.|+||.|+|| |||++||++.|++.++ ++.+++.+++++|+++|+ ++|.|||+|||+++++|++++++++
T Consensus 148 ~~i~i~s~vP~gsGL--SAA~~va~~~Al~~~~~g~~~~l~~~~la~la~~aE~-~vG~~~G~mDQ~as~~G~~g~~l~i 224 (520)
T 3v2u_C 148 AQIFCQSDIPTGGGL--SSAFTCAAALATIRANMGKNFDISKKDLTRITAVAEH-YVGVNNGGMDQATSVYGEEDHALYV 224 (520)
T ss_dssp EEEEEEECCCTTSSH--HHHHHHHHHHHHHHHHHCTTCCCBHHHHHHHHTTGGG-GGTCCCCSHHHHHHHHCBTTBEEEE
T ss_pred eEEEEecCCCCCCCH--HHHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHH-HhCCCCchhhHHHHHhCCCCeEEEE
Confidence 999999999999999 9999999999999999 778999999999999997 9999999999999999999999999
Q ss_pred EecC-CceeeeeccCC----CeEEEEEeCCC---CCcCCCCchhhHHHHHhcChHHHhccc
Q 003222 709 VCQP-AELLGVVEIPS----HIRFWGIDSGI---RHSVGGADYGSVRAGAFMGRKMIKSTA 761 (838)
Q Consensus 709 d~~~-~~~~~~v~~~~----~~~~vi~~s~~---~~~~~~~~y~~~r~~~~~g~~~l~~~~ 761 (838)
||++ +++ .++++|. ++.|+|+||++ +|.+++++||.||++|..+.+.|....
T Consensus 225 d~~~~l~~-~~v~~p~~~~~~~~~vI~ns~v~~~k~~la~s~YN~Rr~eCe~Aa~~L~~~~ 284 (520)
T 3v2u_C 225 EFRPKLKA-TPFKFPQLKNHEISFVIANTLVKSNKFETAPTNYNLRVIEVTVAANALATRY 284 (520)
T ss_dssp ECSSSCEE-EEECCCCCSSCEEEEEEEECCCCCCHHHHTTTTHHHHHHHHHHHHHHHHHHT
T ss_pred EcCCCcee-EEeeCCCccCCCeEEEEEECCCcccccccccchhhHHHHHHHHHHHHHHHhh
Confidence 9999 766 6888886 89999999999 889999999999999999999987643
|
| >1pie_A Galactokinase; galactose, galactosemia, transferase; HET: GLA; 2.10A {Lactococcus lactis} SCOP: d.14.1.5 d.58.26.7 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-33 Score=319.78 Aligned_cols=234 Identities=23% Similarity=0.361 Sum_probs=192.1
Q ss_pred HHHHhccCCCCCceEEEEccccccccccccccCCCeeeccccccceEEEEEEcCCccchhhhhhhhccCCCCCCCCCeEE
Q 003222 484 RKAAAGLFNWEEEIFVARAPGRLDVMGGIADYSGSLVLQMPIREACHVALQKISPSKQRLWKHALARHNDKGQGPMPVLQ 563 (838)
Q Consensus 484 ~~~~~~~f~~~~~~~~~~APGRv~L~GeH~Dy~gg~vl~~ai~~~~~v~~~~~~d~~~~l~~~~~~~~~~~~~~~~~~i~ 563 (838)
...+...||.++.+++++|||||||+|||+||+|+.+|++||++++++.+++++++.+ +
T Consensus 35 ~~~f~~~~g~~~~~~~~~APgkv~L~Geh~d~~G~~~l~~aI~l~~~v~v~~~~~~~i---------------------~ 93 (419)
T 1pie_A 35 TEKFAEVFGDTKEVEYFFSPGRINLIGEHTDYNGGYVFPASITIGTTGLARLREDKKV---------------------K 93 (419)
T ss_dssp HHHHHHHHSCCCSCEEEEEEEEEEEECCSCTTTTCEEEEEEEEEEEEEEEEECSSSEE---------------------E
T ss_pred HHHHHHHhCCCCceEEEEeeEEEEEcccceeeCCCEEEEEEEcccEEEEEEECCCCEE---------------------E
Confidence 3457788996554378899999999999999999999999999999999999876543 3
Q ss_pred EEecccccCCCCCceeccCCccccCCCCcchhhhhcccCCCCCCChhHHHHHHHHHHHHHhCCCCCCCEEEEEEeCCCCC
Q 003222 564 IVSYGSELSNRGPTFDMDLSDFMDEGKPMSYEKAKKYFDTNPSQKWAAYVAGTILVLMTELGVRFEDSISMLVSSAVPEG 643 (838)
Q Consensus 564 i~s~~~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~~~~~~w~~y~~g~i~~~~~~~g~~~~~g~~i~i~s~iP~g 643 (838)
|.+.+.+. ....+++++++. ..+..+|.||+++++..+. +.|..+..|+++.+.++||.|
T Consensus 94 i~~~~~~~---~~~~~~~~~~~~----------------~~~~~~~~n~v~~~~~~l~-~~g~~~~~g~~i~i~s~IP~g 153 (419)
T 1pie_A 94 LYSENFPK---LGVIEFDLDEVE----------------KKDGELWSNYVKGMIVMLK-GAGYEIDKGFELLIKGEIPTA 153 (419)
T ss_dssp EEETTCGG---GCCEEEETTCTT----------------SCCTTCTHHHHHHHHHHHH-HTTCCCCSCEEEEEEECSCTT
T ss_pred EEECCCCC---cceeEEeccccc----------------CCCCcCHHHHHHHHHHHHH-HhCCCCCCCEEEEEECCCCCC
Confidence 33321100 001123332210 0123689999999887754 555554469999999999999
Q ss_pred CCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhhhcCCCCChhhHHHhhcCCCCeEEEEEecCCceeeeeccC-
Q 003222 644 KGVSSSASVEVASMSAIAAAHGLNIHPRDLALLCQKVENHIVGAPCGVMDQMASACGEANKLLAMVCQPAELLGVVEIP- 722 (838)
Q Consensus 644 ~GLgSSAA~~va~~~al~~l~~~~l~~~ela~~a~~~E~~~~G~~~G~mDq~a~~~G~~~~~l~~d~~~~~~~~~v~~~- 722 (838)
+|||||||+++|++.|++.++|.++++.+|+++|+++|++++|.|||+|||+++++||.+.++++++++..+ +++++|
T Consensus 154 aGLGSSaA~~vA~~~al~~l~g~~ls~~el~~la~~~E~~~~G~~~G~~D~~~~~~Gg~~~~~~~d~~~~~~-~~l~~~~ 232 (419)
T 1pie_A 154 SGLSSSASLELLVGVVLDDLFNLNVPRLELVQLGQKTENDYIGVNSGILDQFAIGFGEVKKAIELDCNTLKY-EMVPVEL 232 (419)
T ss_dssp SSSCHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTTCCCCCSHHHHHHHHCBTTEEEEEETTTCCE-EEEECCC
T ss_pred CChhHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhcCCCccchhHHHHHhccCCeEEEeecCCCce-EEeecCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999888766 788887
Q ss_pred CCeEEEEEeCCCCCcCCCCchhhHHHHHhcChHHHhc
Q 003222 723 SHIRFWGIDSGIRHSVGGADYGSVRAGAFMGRKMIKS 759 (838)
Q Consensus 723 ~~~~~vi~~s~~~~~~~~~~y~~~r~~~~~g~~~l~~ 759 (838)
+++.++|++|++++++.+++||.||.++...++.|.+
T Consensus 233 ~~~~~vl~~~~~~~~t~~~~y~~r~~~~~~a~~~l~~ 269 (419)
T 1pie_A 233 RDYDIVIMNTNKPRALTESKYNERFAETREALKRMQT 269 (419)
T ss_dssp TTEEEEEEECCCCCCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred CCcEEEEEECCCccccccchHHHHHHHHHHHHHHHhh
Confidence 6899999999999999999999999998888888764
|
| >2a2c_A N-acetylgalactosamine kinase; galactokinase, , transferase; HET: NG1 ADP; 1.65A {Homo sapiens} PDB: 2a2d_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-32 Score=314.87 Aligned_cols=235 Identities=21% Similarity=0.321 Sum_probs=192.0
Q ss_pred HHHHHhccCCCCCceEEEEccccccccccccccCCCeeeccccccceEEEEEEcCCccchhhhhhhhccCCCCCCCCCeE
Q 003222 483 ERKAAAGLFNWEEEIFVARAPGRLDVMGGIADYSGSLVLQMPIREACHVALQKISPSKQRLWKHALARHNDKGQGPMPVL 562 (838)
Q Consensus 483 ~~~~~~~~f~~~~~~~~~~APGRv~L~GeH~Dy~gg~vl~~ai~~~~~v~~~~~~d~~~~l~~~~~~~~~~~~~~~~~~i 562 (838)
....+...||. ++.++++|||||+|+|||+||+|+.||++||++++++.+++++++.+
T Consensus 42 ~~~~f~~~fg~-~~~~~~~APgrv~L~Geh~D~~g~~vl~~AI~~~~~v~v~~~~~~~i--------------------- 99 (478)
T 2a2c_A 42 LKEMFNSKFGS-IPKFYVRAPGRVNIIGEHIDYCGYSVLPMAVEQDVLIAVEPVKTYAL--------------------- 99 (478)
T ss_dssp HHHHHHHHHSS-CCSEEEEEEEEEEEECTTCGGGTCCBEEEEEEEEEEEEEEECSSSCE---------------------
T ss_pred HHHHHHHHhCC-CCCEEEEeceEEEEeccceeeCCCeEEEEEecccEEEEEEECCCCeE---------------------
Confidence 34567889995 55678999999999999999999999999999999999999876544
Q ss_pred EEEecccccCCCCCceeccCCccccCCCCcchhhhhcccCCCCCCChhHHHHHHHHHHHHHhCCCCCCCEEEEEEeCCCC
Q 003222 563 QIVSYGSELSNRGPTFDMDLSDFMDEGKPMSYEKAKKYFDTNPSQKWAAYVAGTILVLMTELGVRFEDSISMLVSSAVPE 642 (838)
Q Consensus 563 ~i~s~~~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~~~~~~w~~y~~g~i~~~~~~~g~~~~~g~~i~i~s~iP~ 642 (838)
+|.+.+.++ +.++++++++. . ......|.||+++++..+++.++.....||++.+.|+||.
T Consensus 100 ~i~~~~~~~----~~~~~~~~~l~-------~--------~~~~~~~~n~v~~a~~~v~~~~~~~~~~g~~i~i~s~IP~ 160 (478)
T 2a2c_A 100 QLANTNPLY----PDFSTSANNIQ-------I--------DKTKPLWHNYFLCGLKGIQEHFGLSNLTGMNCLVDGNIPP 160 (478)
T ss_dssp EEEESSTTS----CCEEECCCCC-----------------CCSSCCHHHHHHHHHHHHHHHTTCCSCCCEEEEEEECSCT
T ss_pred EEEECCCCC----cceeccchhcc-------c--------CCCcccHHHHHHHHHHHHHHHHhccCCCceEEEEECCCCC
Confidence 343322110 12334433321 0 0134689999988777766665541136999999999999
Q ss_pred CCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhhhcCCCCChhhHHHhhcCCCCeEEEEEecCCceeeeeccC
Q 003222 643 GKGVSSSASVEVASMSAIAAAHGLNIHPRDLALLCQKVENHIVGAPCGVMDQMASACGEANKLLAMVCQPAELLGVVEIP 722 (838)
Q Consensus 643 g~GLgSSAA~~va~~~al~~l~~~~l~~~ela~~a~~~E~~~~G~~~G~mDq~a~~~G~~~~~l~~d~~~~~~~~~v~~~ 722 (838)
|+|||||||++||++.|++.++|.++++.+++++|+.+|+ +.|.+||+|||+++++|+.+.+++++|++..+ .++++|
T Consensus 161 g~GLgSSAA~~va~~~al~~~~~~~ls~~~l~~la~~~E~-~~g~~~g~~D~~a~~~G~~g~~~~i~f~~~~~-~~~~~~ 238 (478)
T 2a2c_A 161 SSGLSSSSALVCCAGLVTLTVLGRNLSKVELAEICAKSER-YIGTEGGGMDQSISFLAEEGTAKLIEFSPLRA-TDVKLP 238 (478)
T ss_dssp TSSSCHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHG-GGTCCCCSHHHHHHHHCBTTBEEEEETTTTEE-EEECCC
T ss_pred CCCchHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh-hcCCCCccHHHHHHHhccCCcEEEEEcCCCce-EEecCC
Confidence 9999999999999999999999999999999999999997 68999999999999999888899999998655 688888
Q ss_pred CCeEEEEEeCCCCCc-CCCCchhhHHHHHhcChHHHhcc
Q 003222 723 SHIRFWGIDSGIRHS-VGGADYGSVRAGAFMGRKMIKST 760 (838)
Q Consensus 723 ~~~~~vi~~s~~~~~-~~~~~y~~~r~~~~~g~~~l~~~ 760 (838)
.++.|+|+||+++|+ ..+++||.||++|..+.+.|.+.
T Consensus 239 ~~~~~vi~~s~~~~~t~~t~~yn~r~~e~~~A~~~L~~~ 277 (478)
T 2a2c_A 239 SGAVFVIANSCVEMNKAATSHFNIRVMECRLAAKLLAKY 277 (478)
T ss_dssp TTEEEEEEECCCCCCGGGSSHHHHHHHHHHHHHHHHHHH
T ss_pred CCcEEEEEeCCCcccccccchhHHHHHHHHHHHHHHHhh
Confidence 889999999999996 45689999999998888887654
|
| >1wuu_A Galactokinase; galactosemia, GHMP superfamily, transferase; HET: GLA ANP; 2.50A {Homo sapiens} SCOP: d.14.1.5 d.58.26.7 | Back alignment and structure |
|---|
Probab=99.98 E-value=9.7e-32 Score=303.22 Aligned_cols=236 Identities=25% Similarity=0.382 Sum_probs=186.2
Q ss_pred HHHHHHhccCCCCCceEEEEccccccccccccccCCCeeeccccccceEEEEEEcCCccchhhhhhhhccCCCCCCCCCe
Q 003222 482 RERKAAAGLFNWEEEIFVARAPGRLDVMGGIADYSGSLVLQMPIREACHVALQKISPSKQRLWKHALARHNDKGQGPMPV 561 (838)
Q Consensus 482 ~~~~~~~~~f~~~~~~~~~~APGRv~L~GeH~Dy~gg~vl~~ai~~~~~v~~~~~~d~~~~l~~~~~~~~~~~~~~~~~~ 561 (838)
.....+...||. ++.++++|||||||+|||+||+||.+|++||++++++.+++++++.++
T Consensus 22 ~~~~~f~~~~~~-~~~~~~~APgkv~L~Geh~Dy~~~~~l~~ai~~~~~v~v~~~~~~~i~------------------- 81 (399)
T 1wuu_A 22 EARRAFREEFGA-EPELAVSAPGRVNLIGEHTDYNQGLVLPMALELMTVLVGSPRKDGLVS------------------- 81 (399)
T ss_dssp HHHHHHHHHHSS-CCSEEEEEEEEEEEECTTCGGGTCEEEEEEEEEEEEEEEEEETTCEEE-------------------
T ss_pred HHHHHHHHHhCC-CCCEEEEeeeeEEEeccccccCCCEEEeEEecccEEEEEEECCCCeEE-------------------
Confidence 345567788996 456788999999999999999999999999999999999998765443
Q ss_pred EEEEecccccCCCCCceeccCCccccCCCCcchhhhhcccCCCCCCChhHHHHHHHHHHHHHhCCCCCCCEEEEEEeCCC
Q 003222 562 LQIVSYGSELSNRGPTFDMDLSDFMDEGKPMSYEKAKKYFDTNPSQKWAAYVAGTILVLMTELGVRFEDSISMLVSSAVP 641 (838)
Q Consensus 562 i~i~s~~~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~~~~~~w~~y~~g~i~~~~~~~g~~~~~g~~i~i~s~iP 641 (838)
|.+.+.+.. .....+++++.+ +++. ..+..+|.||+++++..+ .+..+ .|+++.+.|+||
T Consensus 82 --i~~~~~~~~-~~~~~~~~~~~~----~~~~---------~~~~~~~~n~v~~a~~~l---~~~~~-~g~~i~i~s~IP 141 (399)
T 1wuu_A 82 --LLTTSEGAD-EPQRLQFPLPTA----QRSL---------EPGTPRWANYVKGVIQYY---PAAPL-PGFSAVVVSSVP 141 (399)
T ss_dssp --EEECCSSSC-SCSEEEEECCCS----SCCC---------CCCSSGGGHHHHHHHHHC---SSSCC-CEEEEEEEECSC
T ss_pred --EEECCCCCc-cccceEEecCcc----cccc---------ccCCCCHHHHHHHHHHHh---cCCCC-CCeEEEEECCCC
Confidence 333211100 000011222210 0000 113467999999988765 34444 699999999999
Q ss_pred CCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhhhcCCCCChhhHHHhhcCCCCeEEEEEecCCceeeeecc
Q 003222 642 EGKGVSSSASVEVASMSAIAAAHGLNIHPRDLALLCQKVENHIVGAPCGVMDQMASACGEANKLLAMVCQPAELLGVVEI 721 (838)
Q Consensus 642 ~g~GLgSSAA~~va~~~al~~l~~~~l~~~ela~~a~~~E~~~~G~~~G~mDq~a~~~G~~~~~l~~d~~~~~~~~~v~~ 721 (838)
.|+|||||||+++|++.|++.++|.++++.+++++|+++|+.++|.|||+|||+++++||.+.++++++++..+ +++++
T Consensus 142 ~gaGLGSSaA~~vA~~~al~~l~~~~l~~~~l~~la~~~E~~~~G~~~G~~D~~~~~~Gg~~~~~~~~~~~~~~-~~~~~ 220 (399)
T 1wuu_A 142 LGGGLSSSASLEVATYTFLQQLCPDSGTIAARAQVCQQAEHSFAGMPCGIMDQFISLMGQKGHALLIDCRSLET-SLVPL 220 (399)
T ss_dssp TTSSSCHHHHHHHHHHHHHHHHSCCCSCHHHHHHHHHHHHHHHTCCCCCSHHHHHHHHCCTTEEEEEETTTCCE-EEEEC
T ss_pred CCCCccHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhcCCCCccHHHHHHHhccCCeEEEEecCCCce-EEecC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999887665 67777
Q ss_pred C-CCeEEEEEeCCCCCcCCCCchhhHHHHHhcChHHHh
Q 003222 722 P-SHIRFWGIDSGIRHSVGGADYGSVRAGAFMGRKMIK 758 (838)
Q Consensus 722 ~-~~~~~vi~~s~~~~~~~~~~y~~~r~~~~~g~~~l~ 758 (838)
| .++.++|++|++++++.++.|+.||.++...++.|.
T Consensus 221 ~~~~~~~vl~~~~~~~~t~~~~y~~r~~~~~~a~~~l~ 258 (399)
T 1wuu_A 221 SDPKLAVLITNSNVRHSLASSEYPVRRRQCEEVARALG 258 (399)
T ss_dssp CCSSEEEEEEEEEEEC--CTTTHHHHHHHHHHHHHHTT
T ss_pred CCCCeEEEEEECCCccccccccHHHHHHHHHHHHHHhC
Confidence 6 489999999999999998999999988766666663
|
| >3k85_A D-glycero-D-manno-heptose 1-phosphate kinase; bacteriodes thetaiotaomicron, protein structure initiative II(PSI II), nysgxrc; 2.28A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.97 E-value=1e-31 Score=297.91 Aligned_cols=196 Identities=17% Similarity=0.168 Sum_probs=154.5
Q ss_pred eEEEEcccccccccccccc------CCCeeeccccccceEEEEEEcCCccchhhhhhhhccCCCCCCCCCeEEEEecccc
Q 003222 497 IFVARAPGRLDVMGGIADY------SGSLVLQMPIREACHVALQKISPSKQRLWKHALARHNDKGQGPMPVLQIVSYGSE 570 (838)
Q Consensus 497 ~~~~~APGRv~L~GeH~Dy------~gg~vl~~ai~~~~~v~~~~~~d~~~~l~~~~~~~~~~~~~~~~~~i~i~s~~~~ 570 (838)
+++++|||||||+|||||| +||+||++||++++++++++++|+++++++.+ ++.
T Consensus 3 mi~~~APgRvnL~GehtD~~~~~~~~gG~vl~~AId~~~~v~i~~~~d~~i~i~s~~-----------~~~--------- 62 (357)
T 3k85_A 3 LVRSKAPLRLGLAGGGSDVSPYSDIYGGLILNATINLYAYCTIEETNSGRIEINAYD-----------AQC--------- 62 (357)
T ss_dssp CEEEEEEEEEEEECTTTTSTTHHHHTCEEEEEEEEEEEEEEEEEECSSSEEEEEETT-----------TTE---------
T ss_pred EEEEECceEEEEecCCccCcchhhcCCCEEEEEEEeCcEEEEEEECCCCeEEEEECC-----------CCc---------
Confidence 4688999999999999999 89999999999999999999988766654321 110
Q ss_pred cCCCCCceeccCCccccCCCCcchhhhhcccCCCCCCChhHHHHHHHHHHHHHhCCCCCCCEEEEEEeCCCCCCCCChHH
Q 003222 571 LSNRGPTFDMDLSDFMDEGKPMSYEKAKKYFDTNPSQKWAAYVAGTILVLMTELGVRFEDSISMLVSSAVPEGKGVSSSA 650 (838)
Q Consensus 571 ~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~~~~~~w~~y~~g~i~~~~~~~g~~~~~g~~i~i~s~iP~g~GLgSSA 650 (838)
..++++.+ ++ +..+|.||+++++..+. +.+.....||++.+.++||.|+||||||
T Consensus 63 ------~~~~~~~~------~~------------~~~~~~~~v~~~~~~l~-~~~~~~~~g~~i~i~~~iP~g~GLgSSa 117 (357)
T 3k85_A 63 ------CKSYLSMS------QL------------EIDGEASLIKGVYNRII-RDYRLEPKSFKITTYNDAPAGSGLGTSS 117 (357)
T ss_dssp ------EEEEECCS------SC------------CCCSSSHHHHHHHHHHH-HHTTCCCCCEEEEEEESSCSSSSSCHHH
T ss_pred ------eEEEeccc------cc------------cccchHHHHHHHHHHHH-HhcCCCCCCEEEEEecCCCCCCCchHHH
Confidence 11223222 01 22589999999998865 4443213699999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhhhcCCCCChhhHHHhhcCCCCeEEEEEecCCceeeeeccCCC------
Q 003222 651 SVEVASMSAIAAAHGLNIHPRDLALLCQKVENHIVGAPCGVMDQMASACGEANKLLAMVCQPAELLGVVEIPSH------ 724 (838)
Q Consensus 651 A~~va~~~al~~l~~~~l~~~ela~~a~~~E~~~~G~~~G~mDq~a~~~G~~~~~l~~d~~~~~~~~~v~~~~~------ 724 (838)
|++||++.|++.++|.++++.+++++|+++|+.++|.|||+|||+++++||...+.+.++++..+ .++++++.
T Consensus 118 a~~va~~~al~~~~~~~l~~~~l~~~a~~~E~~~~G~~~G~~D~~a~~~Gg~~~~~~~~~~~~~~-~~l~~~~~~~~~l~ 196 (357)
T 3k85_A 118 TMVVCILKAFIEWLSLPLGDYETSRLAYEIERKDLGLSGGKQDQYAAAFGGFNYMEFLQNDLVIV-NPLKMKRWIVDELE 196 (357)
T ss_dssp HHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHCSEEEEEEETTTEEEE-EEECCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHccCCCcHHHHHHHHhCCceEEEEeCCCceeE-EEEecChhhhhhcC
Confidence 99999999999999999999999999999999999999999999999999987766665555444 57777643
Q ss_pred eEEEEEeCCCCCcC
Q 003222 725 IRFWGIDSGIRHSV 738 (838)
Q Consensus 725 ~~~vi~~s~~~~~~ 738 (838)
..++|++|+++|++
T Consensus 197 ~~lvi~~t~~~~~a 210 (357)
T 3k85_A 197 SSMVLYFTGRSRSS 210 (357)
T ss_dssp HTEEEECC------
T ss_pred ceEEEEECCCcccH
Confidence 57899999999874
|
| >2cz9_A Probable galactokinase; structural genomics, NPPSFA, national project protein structural and functional analyses; 1.50A {Pyrococcus horikoshii} PDB: 2dei_A* 2dej_A* 1s4e_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=3.3e-29 Score=277.62 Aligned_cols=211 Identities=26% Similarity=0.435 Sum_probs=171.4
Q ss_pred EEEEccccccccccccccCCCeeeccccccceEEEEEEcCCccchhhhhhhhccCCCCCCCCCeEEEEecccccCCCCCc
Q 003222 498 FVARAPGRLDVMGGIADYSGSLVLQMPIREACHVALQKISPSKQRLWKHALARHNDKGQGPMPVLQIVSYGSELSNRGPT 577 (838)
Q Consensus 498 ~~~~APGRv~L~GeH~Dy~gg~vl~~ai~~~~~v~~~~~~d~~~~l~~~~~~~~~~~~~~~~~~i~i~s~~~~~~~~~~~ 577 (838)
++++|||||||+|||+||+|+.++++||++++++.+++++++.+++.+. +.+ ..
T Consensus 2 ~~~~aP~ki~L~Ge~~d~~~~~~l~~ai~~~~~v~v~~~~~~~i~i~~~---------------------~~~-----~~ 55 (350)
T 2cz9_A 2 IKVKSPGRVNLIGEHTDYTYGYVMPMAINLYTKIEAEKHGEVILYSEHF---------------------GEE-----RK 55 (350)
T ss_dssp EEEEEEEEEEEECTTCGGGTCEEEEEEEEEEEEEEEEEESSEEEEETTT---------------------TEE-----EE
T ss_pred eEEEeccEEEEeecChhhCCCEEEEEEeeceEEEEEEECCCCeEEEEEC---------------------CCC-----cc
Confidence 5789999999999999999999999999999999999877654433211 000 00
Q ss_pred eeccCCccccCCCCcchhhhhcccCCCCCCChhHHHHHHHHHHHHHhCCCCCCCEEEEEEeCCCCCCCCChHHHHHHHHH
Q 003222 578 FDMDLSDFMDEGKPMSYEKAKKYFDTNPSQKWAAYVAGTILVLMTELGVRFEDSISMLVSSAVPEGKGVSSSASVEVASM 657 (838)
Q Consensus 578 ~~~~l~~~~~~~~p~~~~~~~~~~~~~~~~~w~~y~~g~i~~~~~~~g~~~~~g~~i~i~s~iP~g~GLgSSAA~~va~~ 657 (838)
.++ ++. .+...|.||+++++..+ ++.+... .|++|.+.++||.|+|||||||+++|++
T Consensus 56 ~~~-l~~-------------------~~~~~~~~~~~~~~~~l-~~~~~~~-~g~~i~i~s~IP~g~GLGSSaA~~vA~~ 113 (350)
T 2cz9_A 56 FSL-NDL-------------------RKENSWIDYVKGIFWVL-KESDYEV-GGIKGRVSGNLPLGAGLSSSASFEVGIL 113 (350)
T ss_dssp ECT-TCC-------------------CCCSSTHHHHHHHHHHH-HHTTCCC-CEEEEEEECSCCTTSSSCHHHHHHHHHH
T ss_pred ccc-cCC-------------------CCCCcHHHHHHHHHHHH-HhcCCCC-CCeEEEEECCCCCCCCcchHHHHHHHHH
Confidence 001 110 02368999999987665 4566654 6999999999999999999999999999
Q ss_pred HHHHHHhCCCCCHHHHHHHHHHHHhhhcCCCCChhhHHHhhcCCCCeEEEEEecCCceeeeeccCCCeEEEEEeCCCCCc
Q 003222 658 SAIAAAHGLNIHPRDLALLCQKVENHIVGAPCGVMDQMASACGEANKLLAMVCQPAELLGVVEIPSHIRFWGIDSGIRHS 737 (838)
Q Consensus 658 ~al~~l~~~~l~~~ela~~a~~~E~~~~G~~~G~mDq~a~~~G~~~~~l~~d~~~~~~~~~v~~~~~~~~vi~~s~~~~~ 737 (838)
.|++.++|.++++++++++|+.+|++++|+|||+|||+++++|+.++++++|+++..+ +++++|.++.++|++++++|+
T Consensus 114 ~al~~l~~~~l~~~el~~la~~~e~~~~g~~~gi~d~~~~~~g~~~~~~~~d~~~~~~-~~l~~~~~~~~vl~~~~~~~~ 192 (350)
T 2cz9_A 114 ETLDKLYNLKLDSLSKVLLAKKAENEFVGVPCGILDQFAVVFGREGNVIFLDTHTLDY-EYIPFPKDVSILVFYTGVRRE 192 (350)
T ss_dssp HHHHHHTTCCCCHHHHHHHHHHHHHHTTCCCCCSHHHHHHHHCCTTEEEEEETTTCCE-EEEECCTTEEEEEEECSCC--
T ss_pred HHHHHHhCCCCCHHHHHHHHHHHHHHhcCCCccchhHHHHHhcCCCeEEEEecCCCcE-EEEcCCCCcEEEEEECCCCCc
Confidence 9999999999999999999999999999999999999999999999999999887665 788888889999999999998
Q ss_pred CCCCchhhHHHHHhcChHHH
Q 003222 738 VGGADYGSVRAGAFMGRKMI 757 (838)
Q Consensus 738 ~~~~~y~~~r~~~~~g~~~l 757 (838)
+.+++|+.||.++..+.+.+
T Consensus 193 ~~t~~~~~r~~~~~~a~~~~ 212 (350)
T 2cz9_A 193 LASSEYAERKHIAEESLKIL 212 (350)
T ss_dssp --CHHHHHHHHHHHHHHHHH
T ss_pred cccchHHHHHHHHHHHHHHh
Confidence 88888999987766555444
|
| >3s2u_A UDP-N-acetylglucosamine--N-acetylmuramyl-(pentape pyrophosphoryl-undecaprenol N-acetylglucosamine...; N-acetylglucosaminyl transferase; HET: UD1; 2.23A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=99.95 E-value=2.8e-27 Score=263.73 Aligned_cols=325 Identities=14% Similarity=0.040 Sum_probs=199.6
Q ss_pred CceEEEEEeecCCC-cccHHHHHHHHHHHHHCCCeEEEEeCCCCcccccccCCCceeeeeeccCCCcccccccccChHHH
Q 003222 13 SKHLVFAYYVTGHG-FGHATRVVEVVRNLISAGHDVHVVTGAPDFVFTSEIQSPRLFIRKVLLDCGAVQADALTVDRLAS 91 (838)
Q Consensus 13 m~~~~Il~~v~g~G-~GHv~r~laLA~~L~~~Gh~V~~v~~~~~~~~~~~i~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 91 (838)
|++ +|++ ++.| .||++|+++||++|+++||+|+|++.... +....++..++.+..+. -.++... .....
T Consensus 1 M~~-~i~i--~~GGTgGHi~palala~~L~~~g~~V~~vg~~~g-~e~~~v~~~g~~~~~i~-~~~~~~~-----~~~~~ 70 (365)
T 3s2u_A 1 MKG-NVLI--MAGGTGGHVFPALACAREFQARGYAVHWLGTPRG-IENDLVPKAGLPLHLIQ-VSGLRGK-----GLKSL 70 (365)
T ss_dssp --C-EEEE--ECCSSHHHHHHHHHHHHHHHHTTCEEEEEECSSS-THHHHTGGGTCCEEECC------------------
T ss_pred CCC-cEEE--EcCCCHHHHHHHHHHHHHHHhCCCEEEEEECCch-HhhchhhhcCCcEEEEE-CCCcCCC-----CHHHH
Confidence 443 4543 3445 49999999999999999999999986432 21222221222232210 0111000 00000
Q ss_pred HHHHHHHhhccHHHHHHHHHHHHhcCCCcEEEECCCc---hHHHHHHHhCCcEEEEecCchhHHHHhhhhhcccchHHHH
Q 003222 92 LEKYSETAVAPRKSILKDEVEWLNSIKADLVVSDVVP---VACRAAADAGIRSVCVTNFSWDFIYAEYVMAAGHHHRSIV 168 (838)
Q Consensus 92 l~~~~~~~~~~~~~~l~~~~~~L~~~kPDlVVsD~~~---~~~~aA~~lgIP~V~is~~~~~~i~~~~~~~~~~~~~~i~ 168 (838)
+.....+ ...+.+..++|++++||+||++..+ .+.++|+.++||++.+....+. .. .
T Consensus 71 ~~~~~~~-----~~~~~~~~~~l~~~~PDvVi~~g~~~s~p~~laA~~~~iP~vihe~n~~~----G~-----------~ 130 (365)
T 3s2u_A 71 VKAPLEL-----LKSLFQALRVIRQLRPVCVLGLGGYVTGPGGLAARLNGVPLVIHEQNAVA----GT-----------A 130 (365)
T ss_dssp --CHHHH-----HHHHHHHHHHHHHHCCSEEEECSSSTHHHHHHHHHHTTCCEEEEECSSSC----CH-----------H
T ss_pred HHHHHHH-----HHHHHHHHHHHHhcCCCEEEEcCCcchHHHHHHHHHcCCCEEEEecchhh----hh-----------H
Confidence 1001111 1123445678999999999998533 3567889999999987432211 00 0
Q ss_pred HHHHhhccccceEEe-cCCCCCCCCCCceeecCcccccCCcChHHHHHHhCCCCCCcEEEEEcCCCCch--hhh-HHhh-
Q 003222 169 WQIAEDYSHCEFLIR-LPGYCPMPAFRDVIDVPLVVRRLHKSRKEVRKELGIEDDVKLLILNFGGQPAG--WKL-KEEY- 243 (838)
Q Consensus 169 ~~l~~~y~~~d~ll~-~~~~~~~p~~~~v~~ip~~~~~~~~~~~~~r~~l~~~~~~~~Vlvs~Gs~~~~--~~l-l~~l- 243 (838)
.++...+ ++.++. ++...+......+++.|+...... ..+...++++++++|++++||.+.. .+. .+.+
T Consensus 131 nr~l~~~--a~~v~~~~~~~~~~~~k~~~~g~pvr~~~~~----~~~~~~~~~~~~~~ilv~gGs~g~~~~~~~~~~al~ 204 (365)
T 3s2u_A 131 NRSLAPI--ARRVCEAFPDTFPASDKRLTTGNPVRGELFL----DAHARAPLTGRRVNLLVLGGSLGAEPLNKLLPEALA 204 (365)
T ss_dssp HHHHGGG--CSEEEESSTTSSCC---CEECCCCCCGGGCC----CTTSSCCCTTSCCEEEECCTTTTCSHHHHHHHHHHH
T ss_pred HHhhccc--cceeeecccccccCcCcEEEECCCCchhhcc----chhhhcccCCCCcEEEEECCcCCccccchhhHHHHH
Confidence 1111122 222221 221111111112233333221111 1123345667888999999999874 222 2222
Q ss_pred -CC--CCc-EEEEeCCCCCC--------CCCCeEECCCCCCHHHHHhhcCEEEecCChhhHHHHHHcCCcEEEEeCCC--
Q 003222 244 -LP--SGW-KCLVCGASDSQ--------LPPNFIKLPKDAYTPDFMAASDCMLGKIGYGTVSEALAYKLPFVFVRRDY-- 309 (838)
Q Consensus 244 -~~--~~~-~~vv~G~~~~~--------lp~nv~~~~~~~~~pdlLa~adl~It~gG~~Tv~Eal~~GvP~l~iP~~~-- 309 (838)
++ ..+ .+.++|....+ ++.|+.+.+|+++|+++|+.||++||++|.+|++|++++|+|+|++|.+.
T Consensus 205 ~l~~~~~~~vi~~~G~~~~~~~~~~~~~~~~~~~v~~f~~dm~~~l~~aDlvI~raG~~Tv~E~~a~G~P~Ilip~p~~~ 284 (365)
T 3s2u_A 205 QVPLEIRPAIRHQAGRQHAEITAERYRTVAVEADVAPFISDMAAAYAWADLVICRAGALTVSELTAAGLPAFLVPLPHAI 284 (365)
T ss_dssp TSCTTTCCEEEEECCTTTHHHHHHHHHHTTCCCEEESCCSCHHHHHHHCSEEEECCCHHHHHHHHHHTCCEEECC-----
T ss_pred hcccccceEEEEecCccccccccceecccccccccccchhhhhhhhccceEEEecCCcchHHHHHHhCCCeEEeccCCCC
Confidence 22 233 34456765421 57789999999999999999999999999999999999999999999653
Q ss_pred CCChHHHHHHHHHcCcEEEEecCCCChhhHHHHHHHHhhCCCCcc---------CCCCHHHHHHHHHHHHhcc
Q 003222 310 FNEEPFLRNMLEFYQGGVEMIRRDLLTGHWKPYLERAISLKPCYE---------GGINGGEVAAHILQETAIG 373 (838)
Q Consensus 310 ~~EQ~~Na~~l~~~G~g~~l~~~~~~~~~l~~~l~~ll~~~~~~~---------~~~~g~~~~a~~i~~~~~~ 373 (838)
..+|..||+.+++.|+|+++..++++++.+.++|.+++++++.+. ..+++++++++.|++++.|
T Consensus 285 ~~~Q~~NA~~l~~~G~a~~l~~~~~~~~~L~~~i~~ll~d~~~~~~m~~~a~~~~~~~aa~~ia~~i~~larG 357 (365)
T 3s2u_A 285 DDHQTRNAEFLVRSGAGRLLPQKSTGAAELAAQLSEVLMHPETLRSMADQARSLAKPEATRTVVDACLEVARG 357 (365)
T ss_dssp CCHHHHHHHHHHTTTSEEECCTTTCCHHHHHHHHHHHHHCTHHHHHHHHHHHHTCCTTHHHHHHHHHHHHC--
T ss_pred CcHHHHHHHHHHHCCCEEEeecCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHcc
Confidence 357999999999999999999999999999999999999875422 5789999999999999765
|
| >4amg_A Snogd; transferase, polyketide biosynthesis, GT1 family, nogalamyci; HET: MLY; 2.59A {Streptomyces nogalater} PDB: 4an4_A* 4amb_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=1.7e-27 Score=267.51 Aligned_cols=335 Identities=16% Similarity=0.094 Sum_probs=187.3
Q ss_pred CceEEEEEeecCCCcccHHHHHHHHHHHHHCCCeEEEEeCCCCcccccccCCCceeeeeeccCCCcc---ccc-ccccC-
Q 003222 13 SKHLVFAYYVTGHGFGHATRVVEVVRNLISAGHDVHVVTGAPDFVFTSEIQSPRLFIRKVLLDCGAV---QAD-ALTVD- 87 (838)
Q Consensus 13 m~~~~Il~~v~g~G~GHv~r~laLA~~L~~~Gh~V~~v~~~~~~~~~~~i~~~~~~~~~~~~~~g~~---~~~-~~~~~- 87 (838)
-+.|+|||+ +.++.||++|+++||++|+++||+|+|++... +..... .+..+.....+.... ... ....+
T Consensus 20 ~~~MRIL~~-~~p~~GHv~P~l~LA~~L~~rGh~Vt~~t~~~---~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (400)
T 4amg_A 20 FQSMRALFI-TSPGLSHILPTVPLAQALRALGHEVRYATGGD---IRAVAE-AGLCAVDVSPGVNYAKLFVPDDTDVTDP 94 (400)
T ss_dssp -CCCEEEEE-CCSSHHHHGGGHHHHHHHHHTTCEEEEEECSS---THHHHT-TTCEEEESSTTCCSHHHHSCCC------
T ss_pred CCCCeEEEE-CCCchhHHHHHHHHHHHHHHCCCEEEEEeCcc---hhhHHh-cCCeeEecCCchhHhhhccccccccccc
Confidence 345678764 67789999999999999999999999998753 111111 111221211111110 000 00000
Q ss_pred ---hHHHHHHHHHHhhccHHHHHHHHHHHHhcCCCcEEEECC-CchHHHHHHHhCCcEEEEecCchh--HHHHhhhhhcc
Q 003222 88 ---RLASLEKYSETAVAPRKSILKDEVEWLNSIKADLVVSDV-VPVACRAAADAGIRSVCVTNFSWD--FIYAEYVMAAG 161 (838)
Q Consensus 88 ---~~~~l~~~~~~~~~~~~~~l~~~~~~L~~~kPDlVVsD~-~~~~~~aA~~lgIP~V~is~~~~~--~i~~~~~~~~~ 161 (838)
.......+...+.......+....+.+++++||+||+|. .+++..+|+.+|||.+.+....+. ..+.....
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~pD~Vv~d~~~~~~~~~A~~~gip~~~~~~~~~~~~~~~~~~~~--- 171 (400)
T 4amg_A 95 MHSEGLGEGFFAEMFARVSAVAVDGALRTARSWRPDLVVHTPTQGAGPLTAAALQLPCVELPLGPADSEPGLGALIR--- 171 (400)
T ss_dssp ------CHHHHHHHHHHHHHHHHHHHHHHHHHHCCSEEEECTTCTHHHHHHHHTTCCEEECCSSTTTCCHHHHHHHH---
T ss_pred cchhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEECcchHHHHHHHHHcCCCceeecccccccccchhhHHH---
Confidence 000001111111111223345557788899999999995 778889999999999876321110 11111100
Q ss_pred cchHHHHHHHHhhccc----c-ceEEe-cCCC--CCCCC---CCceeecCcccccCCcChHHHHHHhCCCCCCcEEEEEc
Q 003222 162 HHHRSIVWQIAEDYSH----C-EFLIR-LPGY--CPMPA---FRDVIDVPLVVRRLHKSRKEVRKELGIEDDVKLLILNF 230 (838)
Q Consensus 162 ~~~~~i~~~l~~~y~~----~-d~ll~-~~~~--~~~p~---~~~v~~ip~~~~~~~~~~~~~r~~l~~~~~~~~Vlvs~ 230 (838)
..+ ......+.. . ..... .+.. ...+. .+........... .+....++++..+++++|||++
T Consensus 172 ---~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~v~vs~ 244 (400)
T 4amg_A 172 ---RAM-SKDYERHGVTGEPTGSVRLTTTPPSVEALLPEDRRSPGAWPMRYVPYN---GGAVLPDWLPPAAGRRRIAVTL 244 (400)
T ss_dssp ---HHT-HHHHHHTTCCCCCSCEEEEECCCHHHHHTSCGGGCCTTCEECCCCCCC---CCEECCTTCSCCTTCCEEEECC
T ss_pred ---HHH-HHHHHHhCCCcccccchhhcccCchhhccCcccccCCcccCccccccc---ccccCcccccccCCCcEEEEeC
Confidence 000 111111110 0 00110 0000 00000 0111111111000 0111123555567889999999
Q ss_pred CCCCch-------hhhHHhhCCCCcEEEEe-CCCCC----CCCCCeEECCCCCCHHHHHhhcCEEEecCChhhHHHHHHc
Q 003222 231 GGQPAG-------WKLKEEYLPSGWKCLVC-GASDS----QLPPNFIKLPKDAYTPDFMAASDCMLGKIGYGTVSEALAY 298 (838)
Q Consensus 231 Gs~~~~-------~~ll~~l~~~~~~~vv~-G~~~~----~lp~nv~~~~~~~~~pdlLa~adl~It~gG~~Tv~Eal~~ 298 (838)
||.... ..+++.+...++.+++. +.... .+|+|+.+.+|.+ +.++|++||+||||||+||++|++++
T Consensus 245 Gs~~~~~~~~~~~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~v~~~~~~p-~~~lL~~~~~~v~h~G~~s~~Eal~~ 323 (400)
T 4amg_A 245 GSIDALSGGIAKLAPLFSEVADVDAEFVLTLGGGDLALLGELPANVRVVEWIP-LGALLETCDAIIHHGGSGTLLTALAA 323 (400)
T ss_dssp CSCC--CCSSSTTHHHHHHGGGSSSEEEEECCTTCCCCCCCCCTTEEEECCCC-HHHHHTTCSEEEECCCHHHHHHHHHH
T ss_pred CcccccCccHHHHHHHHHHhhccCceEEEEecCccccccccCCCCEEEEeecC-HHHHhhhhhheeccCCccHHHHHHHh
Confidence 998642 12333454556655554 33221 2789999876653 45899999999999999999999999
Q ss_pred CCcEEEEeCCCCCChHHHHHHHHHcCcEEEEecCCCChhhHHHHHHHHhhCCCCcc----------CCCCHHHHHHHHHH
Q 003222 299 KLPFVFVRRDYFNEEPFLRNMLEFYQGGVEMIRRDLLTGHWKPYLERAISLKPCYE----------GGINGGEVAAHILQ 368 (838)
Q Consensus 299 GvP~l~iP~~~~~EQ~~Na~~l~~~G~g~~l~~~~~~~~~l~~~l~~ll~~~~~~~----------~~~~g~~~~a~~i~ 368 (838)
|||+|++| .+.||+.||+++++.|+|+.++..+.++ ++|+++|+++. |+ ...+|+.++|+.|+
T Consensus 324 GvP~v~~P--~~~dQ~~na~~v~~~G~g~~l~~~~~~~----~al~~lL~d~~-~r~~a~~l~~~~~~~~~~~~~a~~le 396 (400)
T 4amg_A 324 GVPQCVIP--HGSYQDTNRDVLTGLGIGFDAEAGSLGA----EQCRRLLDDAG-LREAALRVRQEMSEMPPPAETAAXLV 396 (400)
T ss_dssp TCCEEECC--C---CHHHHHHHHHHTSEEECCTTTCSH----HHHHHHHHCHH-HHHHHHHHHHHHHTSCCHHHHHHHHH
T ss_pred CCCEEEec--CcccHHHHHHHHHHCCCEEEcCCCCchH----HHHHHHHcCHH-HHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 99999999 6889999999999999999998877764 56777887652 21 23446667777766
Q ss_pred HH
Q 003222 369 ET 370 (838)
Q Consensus 369 ~~ 370 (838)
++
T Consensus 397 ~l 398 (400)
T 4amg_A 397 AL 398 (400)
T ss_dssp HH
T ss_pred Hh
Confidence 64
|
| >3k17_A LIN0012 protein; protein structure initiative II(PSI II), NYSGXRC, structural genomics, NEW YORK SGX research center for structural genomics; HET: PGE; 2.10A {Listeria innocua} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.2e-27 Score=265.80 Aligned_cols=193 Identities=17% Similarity=0.200 Sum_probs=149.2
Q ss_pred CceEEEEccccccccccccccC-CCeeeccccccceEEEEEEcCCccchhhhhhhhccCCCCCCCCCeEEEEecccccCC
Q 003222 495 EEIFVARAPGRLDVMGGIADYS-GSLVLQMPIREACHVALQKISPSKQRLWKHALARHNDKGQGPMPVLQIVSYGSELSN 573 (838)
Q Consensus 495 ~~~~~~~APGRv~L~GeH~Dy~-gg~vl~~ai~~~~~v~~~~~~d~~~~l~~~~~~~~~~~~~~~~~~i~i~s~~~~~~~ 573 (838)
..+++++|||||+|+|||+||+ ||+||++||+++++++++++++.. |.|.+++
T Consensus 4 ~~~i~~~APGrv~L~GEh~~~~~g~~~l~~Ai~~~~~v~v~~~~~~~-----------------------i~s~~~~--- 57 (365)
T 3k17_A 4 KNKLQVKIPGKLYVAGEYAVVESGHTAILTAVNRYITLTLEDSERNE-----------------------LWIPHYE--- 57 (365)
T ss_dssp -CCEEEEEEEEEEEECTTGGGSTTCEEEEEEEEEEEEEEEEECSSCE-----------------------EECTTCS---
T ss_pred eeEEEEEecceEEEecccEEecCCCEEEEEEccCcEEEEEEECCCcE-----------------------EEecCCC---
Confidence 3478899999999999999995 999999999999999999987642 2221110
Q ss_pred CCCceeccCCccccCCCCcchhhhhcccCCCCCCChhHHHHHHHHHHHH---HhCCCCCCCEEEEEEeCCCC----CCCC
Q 003222 574 RGPTFDMDLSDFMDEGKPMSYEKAKKYFDTNPSQKWAAYVAGTILVLMT---ELGVRFEDSISMLVSSAVPE----GKGV 646 (838)
Q Consensus 574 ~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~~~~~~w~~y~~g~i~~~~~---~~g~~~~~g~~i~i~s~iP~----g~GL 646 (838)
..+++++++. + ..+...| +|++++++.+.+ +.|... .||++.|.|+||. ++||
T Consensus 58 --~~~~~~~~~~------~----------~~~~~~~-~yv~~~i~~~~~~~~~~g~~~-~g~~i~i~s~iP~~~g~~~GL 117 (365)
T 3k17_A 58 --NPVSWPIGGE------L----------KPDGEHW-TFTAEAINIATTFLKSEGIEL-TPVKMVIETELIDQSGAKYGL 117 (365)
T ss_dssp --SCBCCCTTSC------C----------CCSCGGG-HHHHHHHHHHHHHHHHTTCCC-CCEEEEEEESSBCTTSCBCSS
T ss_pred --cceeeecccC------C----------CCCCChH-HHHHHHHHHHHHHHHhcCCCC-CCEEEEEEcCCCCCCCCCCcc
Confidence 0122222210 0 0122456 999999887543 456665 7999999999996 5699
Q ss_pred ChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhhhcCCCCChhhHHHhhcCCCCeEEEEE-ecC-------------
Q 003222 647 SSSASVEVASMSAIAAAHGLNIHPRDLALLCQKVENHIVGAPCGVMDQMASACGEANKLLAMV-CQP------------- 712 (838)
Q Consensus 647 gSSAA~~va~~~al~~l~~~~l~~~ela~~a~~~E~~~~G~~~G~mDq~a~~~G~~~~~l~~d-~~~------------- 712 (838)
|||||++||++.|++.++++++++.+++++|+.+|+.++|.++| |||+++++||. +++. +.+
T Consensus 118 gSSaa~~va~~~al~~~~~~~l~~~~l~~~a~~~E~~~~g~~~g-~D~~~~~~Gg~---~~~~~~~~~~~~~~~~~~~l~ 193 (365)
T 3k17_A 118 GSSAAATVAVINALMTKFYPEISMLKKFKLAALSHLVVQGNGSC-GDIASCMYGGW---IAYTTFDQEWVKHRLAYKSLE 193 (365)
T ss_dssp CHHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHSSCCS-HHHHHHHHCSE---EEEECCCHHHHHHHHTTSCHH
T ss_pred cHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCCCc-ccHHHHhcCCE---EEEecCCHHHhhhhcccchhh
Confidence 99999999999999999999999999999999999999995555 99999999993 4443 211
Q ss_pred --------CceeeeeccCCCeEEEEEeCCCCCcC
Q 003222 713 --------AELLGVVEIPSHIRFWGIDSGIRHSV 738 (838)
Q Consensus 713 --------~~~~~~v~~~~~~~~vi~~s~~~~~~ 738 (838)
....+++++|.+ .++++||+++|++
T Consensus 194 ~l~~~~w~~~~~~~l~~~~~-~lll~~t~~~~sT 226 (365)
T 3k17_A 194 WFMKEPWPMLQIETLEEPVP-TFSVGWTGTPVST 226 (365)
T ss_dssp HHHHSCCTTCEEEEECCCSS-EEEEEECSCCCCH
T ss_pred hhhccCCCCcceeeccCCcc-cEEEEECCCccch
Confidence 222357787777 9999999999975
|
| >2iya_A OLEI, oleandomycin glycosyltransferase; carbohydrate, glycosylation, enzyme, macrolide; HET: UDP ZIO; 1.7A {Streptomyces antibioticus} | Back alignment and structure |
|---|
Probab=99.95 E-value=6.4e-26 Score=257.35 Aligned_cols=347 Identities=16% Similarity=0.139 Sum_probs=210.1
Q ss_pred CCCCceEEEEEeecCCCcccHHHHHHHHHHHHHCCCeEEEEeCCCCcccccccCCCceeeeeeccC--CCcccccccccC
Q 003222 10 SASSKHLVFAYYVTGHGFGHATRVVEVVRNLISAGHDVHVVTGAPDFVFTSEIQSPRLFIRKVLLD--CGAVQADALTVD 87 (838)
Q Consensus 10 ~~~m~~~~Il~~v~g~G~GHv~r~laLA~~L~~~Gh~V~~v~~~~~~~~~~~i~~~~~~~~~~~~~--~g~~~~~~~~~~ 87 (838)
+.+|+.++|+++ +.++.||++|+++||++|+++||+|+|++.... ...+...++.+.+...+ .+.........+
T Consensus 7 ~~~m~~~~Il~~-~~~~~GHv~p~l~la~~L~~~Gh~V~~~~~~~~---~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 82 (424)
T 2iya_A 7 SASVTPRHISFF-NIPGHGHVNPSLGIVQELVARGHRVSYAITDEF---AAQVKAAGATPVVYDSILPKESNPEESWPED 82 (424)
T ss_dssp ----CCCEEEEE-CCSCHHHHHHHHHHHHHHHHTTCEEEEEECGGG---HHHHHHHTCEEEECCCCSCCTTCTTCCCCSS
T ss_pred cCCcccceEEEE-eCCCCcccchHHHHHHHHHHCCCeEEEEeCHHH---HHHHHhCCCEEEecCccccccccchhhcchh
Confidence 445777788774 677899999999999999999999999987531 11111112333332111 010000000111
Q ss_pred hHHHHHHHHHHhhccHHHHHHHHHHHHhcCCCcEEEECC-CchHHHHHHHhCCcEEEEecCc-----hhHHHH----hhh
Q 003222 88 RLASLEKYSETAVAPRKSILKDEVEWLNSIKADLVVSDV-VPVACRAAADAGIRSVCVTNFS-----WDFIYA----EYV 157 (838)
Q Consensus 88 ~~~~l~~~~~~~~~~~~~~l~~~~~~L~~~kPDlVVsD~-~~~~~~aA~~lgIP~V~is~~~-----~~~i~~----~~~ 157 (838)
....+..+.. .......+..+++++.+||+||+|. .+++..+|+.+|||.+.+.... |..... .+.
T Consensus 83 ~~~~~~~~~~----~~~~~~~~l~~~l~~~~pD~VI~d~~~~~~~~~A~~lgIP~v~~~~~~~~~~~~~~~~~~~~~~~~ 158 (424)
T 2iya_A 83 QESAMGLFLD----EAVRVLPQLEDAYADDRPDLIVYDIASWPAPVLGRKWDIPFVQLSPTFVAYEGFEEDVPAVQDPTA 158 (424)
T ss_dssp HHHHHHHHHH----HHHHHHHHHHHHTTTSCCSEEEEETTCTHHHHHHHHHTCCEEEEESSCCCCTTHHHHSGGGSCCCC
T ss_pred HHHHHHHHHH----HHHHHHHHHHHHHhccCCCEEEEcCcccHHHHHHHhcCCCEEEEeccccccccccccccccccccc
Confidence 1111111111 1223445667788899999999997 5678889999999999875322 211000 000
Q ss_pred --------h-hcc---------cchHHHHH---HHHhhcc----------ccceEEe-cCCCCCCC--CC-CceeecCcc
Q 003222 158 --------M-AAG---------HHHRSIVW---QIAEDYS----------HCEFLIR-LPGYCPMP--AF-RDVIDVPLV 202 (838)
Q Consensus 158 --------~-~~~---------~~~~~i~~---~l~~~y~----------~~d~ll~-~~~~~~~p--~~-~~v~~ip~~ 202 (838)
+ ..+ ........ .....+. .++..+. .+.....+ .+ ++++.+|+.
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~vGp~ 238 (424)
T 2iya_A 159 DRGEEAAAPAGTGDAEEGAEAEDGLVRFFTRLSAFLEEHGVDTPATEFLIAPNRCIVALPRTFQIKGDTVGDNYTFVGPT 238 (424)
T ss_dssp ---------------------HHHHHHHHHHHHHHHHHTTCCSCHHHHHHCCSSEEESSCTTTSTTGGGCCTTEEECCCC
T ss_pred ccccccccccccccchhhhccchhHHHHHHHHHHHHHHcCCCCCHHHhccCCCcEEEEcchhhCCCccCCCCCEEEeCCC
Confidence 0 000 00011111 1111110 1222222 22211111 11 245667764
Q ss_pred cccCCcChHHHHHHhCCCCCCcEEEEEcCCCCch-h----hhHHhhCCCCcEE-EEeCCCCC-----CCCCCeEECCCCC
Q 003222 203 VRRLHKSRKEVRKELGIEDDVKLLILNFGGQPAG-W----KLKEEYLPSGWKC-LVCGASDS-----QLPPNFIKLPKDA 271 (838)
Q Consensus 203 ~~~~~~~~~~~r~~l~~~~~~~~Vlvs~Gs~~~~-~----~ll~~l~~~~~~~-vv~G~~~~-----~lp~nv~~~~~~~ 271 (838)
... +.+..+++...+++++||+++||.+.. . .+++.+...++.+ +++|.... .+|+|+++.+|.+
T Consensus 239 ~~~----~~~~~~~~~~~~~~~~v~v~~Gs~~~~~~~~~~~~~~al~~~~~~~~~~~g~~~~~~~~~~~~~~v~~~~~~~ 314 (424)
T 2iya_A 239 YGD----RSHQGTWEGPGDGRPVLLIALGSAFTDHLDFYRTCLSAVDGLDWHVVLSVGRFVDPADLGEVPPNVEVHQWVP 314 (424)
T ss_dssp CCC----CGGGCCCCCCCSSCCEEEEECCSSSCCCHHHHHHHHHHHTTCSSEEEEECCTTSCGGGGCSCCTTEEEESSCC
T ss_pred CCC----cccCCCCCccCCCCCEEEEEcCCCCcchHHHHHHHHHHHhcCCcEEEEEECCcCChHHhccCCCCeEEecCCC
Confidence 321 011112333234678999999998742 2 2334454556765 45676432 2688999988776
Q ss_pred CHHHHHhhcCEEEecCChhhHHHHHHcCCcEEEEeCCCCCChHHHHHHHHHcCcEEEEecCCCChhhHHHHHHHHhhCCC
Q 003222 272 YTPDFMAASDCMLGKIGYGTVSEALAYKLPFVFVRRDYFNEEPFLRNMLEFYQGGVEMIRRDLLTGHWKPYLERAISLKP 351 (838)
Q Consensus 272 ~~pdlLa~adl~It~gG~~Tv~Eal~~GvP~l~iP~~~~~EQ~~Na~~l~~~G~g~~l~~~~~~~~~l~~~l~~ll~~~~ 351 (838)
.+ ++|++||+||||||+||++|++++|+|+|++| .+.||..|++++++.|+|+.+..++++++.+.++|+++++++.
T Consensus 315 ~~-~~l~~~d~~v~~~G~~t~~Ea~~~G~P~i~~p--~~~dQ~~na~~l~~~g~g~~~~~~~~~~~~l~~~i~~ll~~~~ 391 (424)
T 2iya_A 315 QL-DILTKASAFITHAGMGSTMEALSNAVPMVAVP--QIAEQTMNAERIVELGLGRHIPRDQVTAEKLREAVLAVASDPG 391 (424)
T ss_dssp HH-HHHTTCSEEEECCCHHHHHHHHHTTCCEEECC--CSHHHHHHHHHHHHTTSEEECCGGGCCHHHHHHHHHHHHHCHH
T ss_pred HH-HHHhhCCEEEECCchhHHHHHHHcCCCEEEec--CccchHHHHHHHHHCCCEEEcCcCCCCHHHHHHHHHHHHcCHH
Confidence 55 89999999999999999999999999999999 5679999999999999999998888888999999999998763
Q ss_pred Ccc---------CCCCHHHHHHHHHHHHh
Q 003222 352 CYE---------GGINGGEVAAHILQETA 371 (838)
Q Consensus 352 ~~~---------~~~~g~~~~a~~i~~~~ 371 (838)
... ...+|..++++.|++++
T Consensus 392 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 420 (424)
T 2iya_A 392 VAERLAAVRQEIREAGGARAAADILEGIL 420 (424)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 211 34678888888888764
|
| >1kvk_A MK, mevalonate kinase; RMK, ATP, GHMP, transferase; HET: ATP; 2.40A {Rattus norvegicus} SCOP: d.14.1.5 d.58.26.3 PDB: 2r42_A* 2r3v_A | Back alignment and structure |
|---|
Probab=99.94 E-value=4.3e-27 Score=264.94 Aligned_cols=210 Identities=19% Similarity=0.206 Sum_probs=147.6
Q ss_pred eEEEEccccccccccccccCCCeeeccccccceEEEEEEcCCccchhhhhhhhccCCCCCCCCCeEEEEecccccCCCCC
Q 003222 497 IFVARAPGRLDVMGGIADYSGSLVLQMPIREACHVALQKISPSKQRLWKHALARHNDKGQGPMPVLQIVSYGSELSNRGP 576 (838)
Q Consensus 497 ~~~~~APGRv~L~GeH~Dy~gg~vl~~ai~~~~~v~~~~~~d~~~~l~~~~~~~~~~~~~~~~~~i~i~s~~~~~~~~~~ 576 (838)
+++++|||||+|+|||+||+||.||++||++++++.+++++++++++.+.+ .. ..
T Consensus 5 ~~~~~APgrv~L~Geh~d~~g~~~l~~ai~~~~~v~v~~~~~~~i~i~~~~-----------~~-~~------------- 59 (395)
T 1kvk_A 5 VLLVSAPGKVILHGEHAVVHGKVALAVALNLRTFLVLRPQSNGKVSLNLPN-----------VG-IK------------- 59 (395)
T ss_dssp CEEEEEEEEEEEECTTGGGGTCCEEEEEEEEEEEEEEEECSSSEEEEEETT-----------TT-EE-------------
T ss_pred cEEEEeCeEEEEecCCeeeECCEeeeeEeeccEEEEEEECCCCeEEEEcCC-----------CC-ce-------------
Confidence 578999999999999999999999999999999999999988766554221 00 00
Q ss_pred ceeccCCccccC----CCC-----cchhhhhcccCCCCCCChhHHH--HH---HHHHHHHHhCCC-CCCCEEEEEEeCCC
Q 003222 577 TFDMDLSDFMDE----GKP-----MSYEKAKKYFDTNPSQKWAAYV--AG---TILVLMTELGVR-FEDSISMLVSSAVP 641 (838)
Q Consensus 577 ~~~~~l~~~~~~----~~p-----~~~~~~~~~~~~~~~~~w~~y~--~g---~i~~~~~~~g~~-~~~g~~i~i~s~iP 641 (838)
++++++++... ++| +..+.....-.-....+|.+|+ ++ ++..+.+..+.. ...|+++.+.++||
T Consensus 60 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~l~~~~~~~~~~~~~~g~~i~i~s~iP 138 (395)
T 1kvk_A 60 -QVWDVATLQLLDTGFLEQGDVPAPTLEQLEKLKKVAGLPRDCVGNEGLSLLAFLYLYLAICRKQRTLPSLDIMVWSELP 138 (395)
T ss_dssp -EEEEHHHHHTSCC----------------CHHHHHHTSSCCCSCTTHHHHHHHHHHHHHHHTTSSSCCCEEEEEEESSC
T ss_pred -EEEEhHhhhhhhcccccccccccccHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHhccccCCCCEEEEEEecCC
Confidence 11222111000 000 0000000000000124799994 34 333333233431 12699999999999
Q ss_pred CCCCCChHHHHHHHHHHHHHHHhCC-----CCC-------H---HHHHHHHHHHHhhhcCCCCChhhHHHhhcCCCCeEE
Q 003222 642 EGKGVSSSASVEVASMSAIAAAHGL-----NIH-------P---RDLALLCQKVENHIVGAPCGVMDQMASACGEANKLL 706 (838)
Q Consensus 642 ~g~GLgSSAA~~va~~~al~~l~~~-----~l~-------~---~ela~~a~~~E~~~~G~~~G~mDq~a~~~G~~~~~l 706 (838)
.|+|||||||++||++.|++.++|. +++ + .+++++|+.+|+.++|.|||+ ||+++++||. +
T Consensus 139 ~g~GLGSSaA~~va~~~al~~l~~~~~~~~~l~~~~~~~~~~~l~~l~~~A~~~E~~~~G~~sG~-D~~~~~~Gg~---~ 214 (395)
T 1kvk_A 139 PGAGLGSSAAYSVCVAAALLTACEEVTNPLKDRGSIGSWPEEDLKSINKWAYEGERVIHGNPSGV-DNSVSTWGGA---L 214 (395)
T ss_dssp TTSSSCHHHHHHHHHHHHHHHHTTSSCCGGGGCCSEECCCHHHHHHHHHHHHHHHHHHHSSCCSH-HHHHHHHCSE---E
T ss_pred CCCCccHHHHHHHHHHHHHHHHhCcccccccccccccccchhhHHHHHHHHHHhhheEecCCCCc-chHHhhhcce---E
Confidence 9999999999999999999999999 788 7 566667899999999999997 9999999984 4
Q ss_pred EEEecCCceeeeeccCCCeEEEEEeCCCCCcCC
Q 003222 707 AMVCQPAELLGVVEIPSHIRFWGIDSGIRHSVG 739 (838)
Q Consensus 707 ~~d~~~~~~~~~v~~~~~~~~vi~~s~~~~~~~ 739 (838)
++ ++..+ ++++++.++.++|++|++++++.
T Consensus 215 ~~--~~~~~-~~l~~~~~~~~vl~~~~~~~~T~ 244 (395)
T 1kvk_A 215 RY--QQGKM-SSLKRLPALQILLTNTKVPRSTK 244 (395)
T ss_dssp EE--SSSCE-EECSCCCCEEEEEEECCCCCCHH
T ss_pred EE--cCCCc-eeccCCCCcEEEEEECCCCCchH
Confidence 43 45544 67776678999999999999863
|
| >3rsc_A CALG2; TDP, enediyne, structural genomics, PSI-2, protein structure initiative, center for eukaryotic structural genomics; HET: TYD C0T; 2.19A {Micromonospora echinospora} PDB: 3iaa_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=9.7e-26 Score=254.73 Aligned_cols=345 Identities=14% Similarity=0.106 Sum_probs=207.5
Q ss_pred CCCCceEEEEEeecCCCcccHHHHHHHHHHHHHCCCeEEEEeCCCCcccccccCCCceeeeeeccCCCcccc--cccccC
Q 003222 10 SASSKHLVFAYYVTGHGFGHATRVVEVVRNLISAGHDVHVVTGAPDFVFTSEIQSPRLFIRKVLLDCGAVQA--DALTVD 87 (838)
Q Consensus 10 ~~~m~~~~Il~~v~g~G~GHv~r~laLA~~L~~~Gh~V~~v~~~~~~~~~~~i~~~~~~~~~~~~~~g~~~~--~~~~~~ 87 (838)
++.|. +|+|+ +..|.||++|+++||++|+++||+|+|++... +...+...++.+.....+...... ......
T Consensus 17 ~~~m~--rIl~~-~~~~~GHv~p~l~La~~L~~~Gh~V~v~~~~~---~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~ 90 (415)
T 3rsc_A 17 GRHMA--HLLIV-NVASHGLILPTLTVVTELVRRGHRVSYVTAGG---FAEPVRAAGATVVPYQSEIIDADAAEVFGSDD 90 (415)
T ss_dssp --CCC--EEEEE-CCSCHHHHGGGHHHHHHHHHTTCEEEEEECGG---GHHHHHHTTCEEEECCCSTTTCCHHHHHHSSS
T ss_pred cccCC--EEEEE-eCCCccccccHHHHHHHHHHCCCEEEEEeCHH---HHHHHHhcCCEEEeccccccccccchhhcccc
Confidence 55574 55544 45689999999999999999999999998642 122221123344332111110000 000001
Q ss_pred hHHHHHH-HHHHhhccHHHHHHHHHHHHhcCCCcEEEEC-C-CchHHHHHHHhCCcEEEEecCc-----hhH---HHHhh
Q 003222 88 RLASLEK-YSETAVAPRKSILKDEVEWLNSIKADLVVSD-V-VPVACRAAADAGIRSVCVTNFS-----WDF---IYAEY 156 (838)
Q Consensus 88 ~~~~l~~-~~~~~~~~~~~~l~~~~~~L~~~kPDlVVsD-~-~~~~~~aA~~lgIP~V~is~~~-----~~~---i~~~~ 156 (838)
....+.. +.. .....+.+..+++++++||+||+| + .+++..+|+.+|||++.+.... |.. ....+
T Consensus 91 ~~~~~~~~~~~----~~~~~~~~l~~~l~~~~PDlVi~d~~~~~~~~~aA~~~giP~v~~~~~~~~~~~~~~~~~~~~~~ 166 (415)
T 3rsc_A 91 LGVRPHLMYLR----ENVSVLRATAEALDGDVPDLVLYDDFPFIAGQLLAARWRRPAVRLSAAFASNEHYSFSQDMVTLA 166 (415)
T ss_dssp SCHHHHHHHHH----HHHHHHHHHHHHHSSSCCSEEEEESTTHHHHHHHHHHTTCCEEEEESSCCCCSSCCHHHHHHHHH
T ss_pred HHHHHHHHHHH----HHHHHHHHHHHHHhccCCCEEEECchhhhHHHHHHHHhCCCEEEEEecccccCcccccccccccc
Confidence 1111111 111 122344566788999999999999 4 6677888999999998875221 211 00100
Q ss_pred hhhcccchHHH---HHHHHhhccc-----------cceEE-ecCCCCCCC--CC-CceeecCcccccCCcChHHHHHHhC
Q 003222 157 VMAAGHHHRSI---VWQIAEDYSH-----------CEFLI-RLPGYCPMP--AF-RDVIDVPLVVRRLHKSRKEVRKELG 218 (838)
Q Consensus 157 ~~~~~~~~~~i---~~~l~~~y~~-----------~d~ll-~~~~~~~~p--~~-~~v~~ip~~~~~~~~~~~~~r~~l~ 218 (838)
....+.....+ ...+...+.. .+..+ ..+.....+ .+ .++..+|+..... .+..++..
T Consensus 167 ~~~~p~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~vGp~~~~~----~~~~~~~~ 242 (415)
T 3rsc_A 167 GTIDPLDLPVFRDTLRDLLAEHGLSRSVVDCWNHVEQLNLVFVPKAFQIAGDTFDDRFVFVGPCFDDR----RFLGEWTR 242 (415)
T ss_dssp TCCCGGGCHHHHHHHHHHHHHTTCCCCHHHHHTCCCSEEEESSCTTTSTTGGGCCTTEEECCCCCCCC----GGGCCCCC
T ss_pred ccCChhhHHHHHHHHHHHHHHcCCCCChhhhhcCCCCeEEEEcCcccCCCcccCCCceEEeCCCCCCc----ccCcCccc
Confidence 00000001111 1111112211 12222 222222111 01 1345565433211 11112222
Q ss_pred CCCCCcEEEEEcCCCCch-h----hhHHhhCCCCcEEEE-eCCCCC-----CCCCCeEECCCCCCHHHHHhhcCEEEecC
Q 003222 219 IEDDVKLLILNFGGQPAG-W----KLKEEYLPSGWKCLV-CGASDS-----QLPPNFIKLPKDAYTPDFMAASDCMLGKI 287 (838)
Q Consensus 219 ~~~~~~~Vlvs~Gs~~~~-~----~ll~~l~~~~~~~vv-~G~~~~-----~lp~nv~~~~~~~~~pdlLa~adl~It~g 287 (838)
..+++++||+++||.... . .+++.+...++.+++ +|.... .+++|+++.+|.+.+ ++|++||+||+|+
T Consensus 243 ~~~~~~~v~v~~Gs~~~~~~~~~~~~~~al~~~~~~~v~~~g~~~~~~~l~~~~~~v~~~~~~~~~-~ll~~ad~~v~~~ 321 (415)
T 3rsc_A 243 PADDLPVVLVSLGTTFNDRPGFFRDCARAFDGQPWHVVMTLGGQVDPAALGDLPPNVEAHRWVPHV-KVLEQATVCVTHG 321 (415)
T ss_dssp CSSCCCEEEEECTTTSCCCHHHHHHHHHHHTTSSCEEEEECTTTSCGGGGCCCCTTEEEESCCCHH-HHHHHEEEEEESC
T ss_pred cCCCCCEEEEECCCCCCChHHHHHHHHHHHhcCCcEEEEEeCCCCChHHhcCCCCcEEEEecCCHH-HHHhhCCEEEECC
Confidence 245788999999998653 1 233344444476655 675422 268899998887655 8999999999999
Q ss_pred ChhhHHHHHHcCCcEEEEeCCCCCChHHHHHHHHHcCcEEEEecCCCChhhHHHHHHHHhhCCCCcc---------CCCC
Q 003222 288 GYGTVSEALAYKLPFVFVRRDYFNEEPFLRNMLEFYQGGVEMIRRDLLTGHWKPYLERAISLKPCYE---------GGIN 358 (838)
Q Consensus 288 G~~Tv~Eal~~GvP~l~iP~~~~~EQ~~Na~~l~~~G~g~~l~~~~~~~~~l~~~l~~ll~~~~~~~---------~~~~ 358 (838)
|++|++|++++|+|+|++| ...||..|++++++.|+|+.+...+++++.+.++|.++++++.... ...+
T Consensus 322 G~~t~~Ea~~~G~P~v~~p--~~~~q~~~a~~l~~~g~g~~~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~~~~~~~~~ 399 (415)
T 3rsc_A 322 GMGTLMEALYWGRPLVVVP--QSFDVQPMARRVDQLGLGAVLPGEKADGDTLLAAVGAVAADPALLARVEAMRGHVRRAG 399 (415)
T ss_dssp CHHHHHHHHHTTCCEEECC--CSGGGHHHHHHHHHHTCEEECCGGGCCHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHSC
T ss_pred cHHHHHHHHHhCCCEEEeC--CcchHHHHHHHHHHcCCEEEcccCCCCHHHHHHHHHHHHcCHHHHHHHHHHHHHHHhcC
Confidence 9999999999999999998 5789999999999999999999888889999999999998763211 3467
Q ss_pred HHHHHHHHHHHHh
Q 003222 359 GGEVAAHILQETA 371 (838)
Q Consensus 359 g~~~~a~~i~~~~ 371 (838)
|++++++.|++++
T Consensus 400 ~~~~~~~~i~~~~ 412 (415)
T 3rsc_A 400 GAARAADAVEAYL 412 (415)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 8888888887764
|
| >3ia7_A CALG4; glycosysltransferase, calicheamicin, enediyne, transf; 1.91A {Micromonospora echinospora} | Back alignment and structure |
|---|
Probab=99.94 E-value=3e-25 Score=248.96 Aligned_cols=343 Identities=18% Similarity=0.116 Sum_probs=207.3
Q ss_pred EEEEEeecCCCcccHHHHHHHHHHHHHCCCeEEEEeCCCCcccccccCCCceeeeeeccCCCccc--ccccccChHHHHH
Q 003222 16 LVFAYYVTGHGFGHATRVVEVVRNLISAGHDVHVVTGAPDFVFTSEIQSPRLFIRKVLLDCGAVQ--ADALTVDRLASLE 93 (838)
Q Consensus 16 ~~Il~~v~g~G~GHv~r~laLA~~L~~~Gh~V~~v~~~~~~~~~~~i~~~~~~~~~~~~~~g~~~--~~~~~~~~~~~l~ 93 (838)
++|+|++ ..+.||++|+++||++|+++||+|+|+++.. +...+...++.+.....+..... ...........+.
T Consensus 5 ~~il~~~-~~~~Ghv~~~~~La~~L~~~GheV~v~~~~~---~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (402)
T 3ia7_A 5 RHILFAN-VQGHGHVYPSLGLVSELARRGHRITYVTTPL---FADEVKAAGAEVVLYKSEFDTFHVPEVVKQEDAETQLH 80 (402)
T ss_dssp CEEEEEC-CSSHHHHHHHHHHHHHHHHTTCEEEEEECHH---HHHHHHHTTCEEEECCCGGGTSSSSSSSCCTTHHHHHH
T ss_pred CEEEEEe-CCCCcccccHHHHHHHHHhCCCEEEEEcCHH---HHHHHHHcCCEEEecccccccccccccccccchHHHHH
Confidence 4666654 5689999999999999999999999998642 11112112333433211111000 0001111111121
Q ss_pred H-HHHHhhccHHHHHHHHHHHHhcCCCcEEEEC-C-CchHHHHHHHhCCcEEEEecCch-----hH--HHHhhhhhccc-
Q 003222 94 K-YSETAVAPRKSILKDEVEWLNSIKADLVVSD-V-VPVACRAAADAGIRSVCVTNFSW-----DF--IYAEYVMAAGH- 162 (838)
Q Consensus 94 ~-~~~~~~~~~~~~l~~~~~~L~~~kPDlVVsD-~-~~~~~~aA~~lgIP~V~is~~~~-----~~--i~~~~~~~~~~- 162 (838)
. +.. .....+.+..+++++++||+||+| + .+++..+|+.+|||++.+....| .. ...........
T Consensus 81 ~~~~~----~~~~~~~~l~~~l~~~~pD~Vi~d~~~~~~~~~aA~~~giP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (402)
T 3ia7_A 81 LVYVR----ENVAILRAAEEALGDNPPDLVVYDVFPFIAGRLLAARWDRPAVRLTGGFAANEHYSLFKELWKSNGQRHPA 156 (402)
T ss_dssp HHHHH----HHHHHHHHHHHHHTTCCCSEEEEESTTHHHHHHHHHHHTCCEEEEESSCCCBTTBCHHHHHHHHHTCCCGG
T ss_pred HHHHH----HHHHHHHHHHHHHhccCCCEEEECchHHHHHHHHHHhhCCCEEEEecccccCccccccccccccccccChh
Confidence 1 111 122345566788899999999999 4 66788889999999988753221 11 00000000000
Q ss_pred chHHH---HHHHHhhccc-----------cceEE-ecCCCCCCC--C-CCceeecCcccccCCcChHHHHHHhCCCCCCc
Q 003222 163 HHRSI---VWQIAEDYSH-----------CEFLI-RLPGYCPMP--A-FRDVIDVPLVVRRLHKSRKEVRKELGIEDDVK 224 (838)
Q Consensus 163 ~~~~i---~~~l~~~y~~-----------~d~ll-~~~~~~~~p--~-~~~v~~ip~~~~~~~~~~~~~r~~l~~~~~~~ 224 (838)
..... ...+...+.. .+..+ .++.....+ . ..++..+|+.... +.+...+....++++
T Consensus 157 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~vGp~~~~----~~~~~~~~~~~~~~~ 232 (402)
T 3ia7_A 157 DVEAVHSVLVDLLGKYGVDTPVKEYWDEIEGLTIVFLPKSFQPFAETFDERFAFVGPTLTG----RDGQPGWQPPRPDAP 232 (402)
T ss_dssp GSHHHHHHHHHHHHTTTCCSCHHHHHTCCCSCEEESSCGGGSTTGGGCCTTEEECCCCCCC--------CCCCCSSTTCC
T ss_pred hHHHHHHHHHHHHHHcCCCCChhhhhcCCCCeEEEEcChHhCCccccCCCCeEEeCCCCCC----cccCCCCcccCCCCC
Confidence 00111 1111111111 02222 122211111 0 1234555543221 111122222245788
Q ss_pred EEEEEcCCCCch-h----hhHHhhCCCCcEEE-EeCCCCC-----CCCCCeEECCCCCCHHHHHhhcCEEEecCChhhHH
Q 003222 225 LLILNFGGQPAG-W----KLKEEYLPSGWKCL-VCGASDS-----QLPPNFIKLPKDAYTPDFMAASDCMLGKIGYGTVS 293 (838)
Q Consensus 225 ~Vlvs~Gs~~~~-~----~ll~~l~~~~~~~v-v~G~~~~-----~lp~nv~~~~~~~~~pdlLa~adl~It~gG~~Tv~ 293 (838)
+||+++||.... . .+++.+...++.++ ++|.... .+++|+++.+|.+.+ ++|++||+||+|+|++|++
T Consensus 233 ~v~v~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~v~~~~~~~~~-~ll~~ad~~v~~~G~~t~~ 311 (402)
T 3ia7_A 233 VLLVSLGNQFNEHPEFFRACAQAFADTPWHVVMAIGGFLDPAVLGPLPPNVEAHQWIPFH-SVLAHARACLTHGTTGAVL 311 (402)
T ss_dssp EEEEECCSCSSCCHHHHHHHHHHHTTSSCEEEEECCTTSCGGGGCSCCTTEEEESCCCHH-HHHTTEEEEEECCCHHHHH
T ss_pred EEEEECCCCCcchHHHHHHHHHHHhcCCcEEEEEeCCcCChhhhCCCCCcEEEecCCCHH-HHHhhCCEEEECCCHHHHH
Confidence 999999998753 1 23334444446554 4675422 268899999988766 9999999999999999999
Q ss_pred HHHHcCCcEEEEeCCCCCChHHHHHHHHHcCcEEEEecCCCChhhHHHHHHHHhhCCCCcc---------CCCCHHHHHH
Q 003222 294 EALAYKLPFVFVRRDYFNEEPFLRNMLEFYQGGVEMIRRDLLTGHWKPYLERAISLKPCYE---------GGINGGEVAA 364 (838)
Q Consensus 294 Eal~~GvP~l~iP~~~~~EQ~~Na~~l~~~G~g~~l~~~~~~~~~l~~~l~~ll~~~~~~~---------~~~~g~~~~a 364 (838)
|++++|+|+|++|.+ ..||..|++.+++.|+|+.+..++++++.+.++|.++++++.... ....|+++++
T Consensus 312 Ea~~~G~P~v~~p~~-~~~q~~~a~~~~~~g~g~~~~~~~~~~~~l~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~ 390 (402)
T 3ia7_A 312 EAFAAGVPLVLVPHF-ATEAAPSAERVIELGLGSVLRPDQLEPASIREAVERLAADSAVRERVRRMQRDILSSGGPARAA 390 (402)
T ss_dssp HHHHTTCCEEECGGG-CGGGHHHHHHHHHTTSEEECCGGGCSHHHHHHHHHHHHHCHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred HHHHhCCCEEEeCCC-cccHHHHHHHHHHcCCEEEccCCCCCHHHHHHHHHHHHcCHHHHHHHHHHHHHHhhCChHHHHH
Confidence 999999999999931 689999999999999999999888889999999999998763211 3567888888
Q ss_pred HHHHHHhc
Q 003222 365 HILQETAI 372 (838)
Q Consensus 365 ~~i~~~~~ 372 (838)
+.|++++.
T Consensus 391 ~~i~~~~~ 398 (402)
T 3ia7_A 391 DEVEAYLG 398 (402)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 88888753
|
| >1iir_A Glycosyltransferase GTFB; rossmann fold; 1.80A {Amycolatopsis orientalis} SCOP: c.87.1.5 | Back alignment and structure |
|---|
Probab=99.93 E-value=9.9e-25 Score=247.09 Aligned_cols=344 Identities=10% Similarity=0.016 Sum_probs=200.2
Q ss_pred EEEEEeecCCCcccHHHHHHHHHHHHHCCCeEEEEeCCCCcccccccCCCceeeeeeccCC-CcccccccccChHHHHHH
Q 003222 16 LVFAYYVTGHGFGHATRVVEVVRNLISAGHDVHVVTGAPDFVFTSEIQSPRLFIRKVLLDC-GAVQADALTVDRLASLEK 94 (838)
Q Consensus 16 ~~Il~~v~g~G~GHv~r~laLA~~L~~~Gh~V~~v~~~~~~~~~~~i~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~l~~ 94 (838)
|+|+++ ++.+.||++|+++||++|+++||+|+|++... +...+...++.+....... ..... ........
T Consensus 1 M~Il~~-~~~~~GHv~P~l~la~~L~~~Gh~V~~~~~~~---~~~~v~~~g~~~~~i~~~~~~~~~~--~~~~~~~~--- 71 (415)
T 1iir_A 1 MRVLLA-TCGSRGDTEPLVALAVRVRDLGADVRMCAPPD---CAERLAEVGVPHVPVGPSARAPIQR--AKPLTAED--- 71 (415)
T ss_dssp CEEEEE-CCSCHHHHHHHHHHHHHHHHTTCEEEEEECGG---GHHHHHHTTCCEEECCC-------C--CSCCCHHH---
T ss_pred CeEEEE-cCCCchhHHHHHHHHHHHHHCCCeEEEEcCHH---HHHHHHHcCCeeeeCCCCHHHHhhc--ccccchHH---
Confidence 367665 67789999999999999999999999998753 1121211223333321110 00000 00011111
Q ss_pred HHHHhhccHHHHHHHH-HHHHh-cCCCcEEEECC--Cch--HHHHHHHhCCcEEEEecCc-hhH------------H---
Q 003222 95 YSETAVAPRKSILKDE-VEWLN-SIKADLVVSDV--VPV--ACRAAADAGIRSVCVTNFS-WDF------------I--- 152 (838)
Q Consensus 95 ~~~~~~~~~~~~l~~~-~~~L~-~~kPDlVVsD~--~~~--~~~aA~~lgIP~V~is~~~-~~~------------i--- 152 (838)
+..++. ...... .++++ ..+||+||+|. .++ +..+|+.+|||++.+.... +.. .
T Consensus 72 ~~~~~~----~~~~~~~~~l~~~~~~pD~vi~d~~~~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~p~~~~~~~~~~~ 147 (415)
T 1iir_A 72 VRRFTT----EAIATQFDEIPAAAEGCAAVVTTGLLAAAIGVRSVAEKLGIPYFYAFHCPSYVPSPYYPPPPLGEPSTQD 147 (415)
T ss_dssp HHHHHH----HHHHHHHHHHHHHTTTCSEEEEESCHHHHHHHHHHHHHHTCCEEEEESSGGGSCCSSSCCCC--------
T ss_pred HHHHHH----HHHHHHHHHHHHHhcCCCEEEECChhHhHhhHHHHHHHhCCCEEEEecCCCcCCCcccCCccCCccccch
Confidence 111110 111222 22222 67999999996 556 7788999999999885332 100 0
Q ss_pred -HHhhhhhc-cc-----chHHHHHHHHhhcccc------------ceEEecCCCC---CCCCCCceeecCccccc-CCcC
Q 003222 153 -YAEYVMAA-GH-----HHRSIVWQIAEDYSHC------------EFLIRLPGYC---PMPAFRDVIDVPLVVRR-LHKS 209 (838)
Q Consensus 153 -~~~~~~~~-~~-----~~~~i~~~l~~~y~~~------------d~ll~~~~~~---~~p~~~~v~~ip~~~~~-~~~~ 209 (838)
........ .. .+....+.+...+... -.+...++.. +.+.. ++..+|+.... ....
T Consensus 148 ~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~-~~~~vG~~~~~~~~~~ 226 (415)
T 1iir_A 148 TIDIPAQWERNNQSAYQRYGGLLNSHRDAIGLPPVEDIFTFGYTDHPWVAADPVLAPLQPTDL-DAVQTGAWILPDERPL 226 (415)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHHCSSCEECSCTTTSCCCCCSS-CCEECCCCCCCCCCCC
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHcCCCCCCccccccCCCCEEEeeChhhcCCCcccC-CeEeeCCCccCcccCC
Confidence 00000000 00 0000011111111100 0122222222 11222 56677775543 2234
Q ss_pred hHHHHHHhCCCCCCcEEEEEcCCCC-ch---hhhHHhhCCCCcEEE-EeCCCCC---CCCCCeEECCCCCCHHHHHhhcC
Q 003222 210 RKEVRKELGIEDDVKLLILNFGGQP-AG---WKLKEEYLPSGWKCL-VCGASDS---QLPPNFIKLPKDAYTPDFMAASD 281 (838)
Q Consensus 210 ~~~~r~~l~~~~~~~~Vlvs~Gs~~-~~---~~ll~~l~~~~~~~v-v~G~~~~---~lp~nv~~~~~~~~~pdlLa~ad 281 (838)
+.++.++++ .++++||+++||.+ .. ..+++.+...++.++ ++|.... .+++|+++.+|.+. .++|++||
T Consensus 227 ~~~~~~~l~--~~~~~v~v~~Gs~~~~~~~~~~~~~al~~~~~~~v~~~g~~~~~~~~~~~~v~~~~~~~~-~~~l~~~d 303 (415)
T 1iir_A 227 SPELAAFLD--AGPPPVYLGFGSLGAPADAVRVAIDAIRAHGRRVILSRGWADLVLPDDGADCFAIGEVNH-QVLFGRVA 303 (415)
T ss_dssp CHHHHHHHH--TSSCCEEEECC---CCHHHHHHHHHHHHHTTCCEEECTTCTTCCCSSCGGGEEECSSCCH-HHHGGGSS
T ss_pred CHHHHHHHh--hCCCeEEEeCCCCCCcHHHHHHHHHHHHHCCCeEEEEeCCCcccccCCCCCEEEeCcCCh-HHHHhhCC
Confidence 567777765 34578999999985 32 123334433344444 4475432 25789999887653 48999999
Q ss_pred EEEecCChhhHHHHHHcCCcEEEEeCCCCCChHHHHHHHHHcCcEEEEecCCCChhhHHHHHHHHhhCCCCcc-------
Q 003222 282 CMLGKIGYGTVSEALAYKLPFVFVRRDYFNEEPFLRNMLEFYQGGVEMIRRDLLTGHWKPYLERAISLKPCYE------- 354 (838)
Q Consensus 282 l~It~gG~~Tv~Eal~~GvP~l~iP~~~~~EQ~~Na~~l~~~G~g~~l~~~~~~~~~l~~~l~~ll~~~~~~~------- 354 (838)
+||||||+||++|++++|+|+|++| .+.||..||+++++.|+|+.++..+++++.+.++|+++ +++....
T Consensus 304 ~~v~~~G~~t~~Ea~~~G~P~i~~p--~~~dQ~~na~~l~~~g~g~~~~~~~~~~~~l~~~i~~l-~~~~~~~~~~~~~~ 380 (415)
T 1iir_A 304 AVIHHGGAGTTHVAARAGAPQILLP--QMADQPYYAGRVAELGVGVAHDGPIPTFDSLSAALATA-LTPETHARATAVAG 380 (415)
T ss_dssp EEEECCCHHHHHHHHHHTCCEEECC--CSTTHHHHHHHHHHHTSEEECSSSSCCHHHHHHHHHHH-TSHHHHHHHHHHHH
T ss_pred EEEeCCChhHHHHHHHcCCCEEECC--CCCccHHHHHHHHHCCCcccCCcCCCCHHHHHHHHHHH-cCHHHHHHHHHHHH
Confidence 9999999999999999999999999 57899999999999999999988888889999999999 7653211
Q ss_pred --CCCCHHHHHHHHHHHHhccCCCccCCCchhHhh
Q 003222 355 --GGINGGEVAAHILQETAIGKNYASDKLSGARRL 387 (838)
Q Consensus 355 --~~~~g~~~~a~~i~~~~~~~~~~~~r~~ga~~L 387 (838)
...+|+++++++|++++ +++|+.||
T Consensus 381 ~~~~~~~~~~~~~~i~~~~--------~~~~~~~~ 407 (415)
T 1iir_A 381 TIRTDGAAVAARLLLDAVS--------REKPTVSA 407 (415)
T ss_dssp HSCSCHHHHHHHHHHHHHH--------TC------
T ss_pred HHhhcChHHHHHHHHHHHH--------hcccHHHH
Confidence 46788999999998875 34566666
|
| >4fzr_A SSFS6; structural genomics, PSI-biology, protein structure initiati enzyme discovery for natural product biosynthesis, natPro; 2.40A {Streptomyces SP} PDB: 4g2t_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=8.8e-25 Score=245.73 Aligned_cols=318 Identities=17% Similarity=0.117 Sum_probs=177.9
Q ss_pred CceEEEEEeecCCCcccHHHHHHHHHHHHHCCCeEEEEeCCCCcccccccCCCceeeeeeccCCCc---------ccccc
Q 003222 13 SKHLVFAYYVTGHGFGHATRVVEVVRNLISAGHDVHVVTGAPDFVFTSEIQSPRLFIRKVLLDCGA---------VQADA 83 (838)
Q Consensus 13 m~~~~Il~~v~g~G~GHv~r~laLA~~L~~~Gh~V~~v~~~~~~~~~~~i~~~~~~~~~~~~~~g~---------~~~~~ 83 (838)
...|+|+|++ ..+.||++++++||++|+++||+|++++... +...+...++.+.....+... .....
T Consensus 13 ~~~MrIl~~~-~~~~gh~~~~~~La~~L~~~GheV~v~~~~~---~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (398)
T 4fzr_A 13 GSHMRILVIA-GCSEGFVMPLVPLSWALRAAGHEVLVAASEN---MGPTVTGAGLPFAPTCPSLDMPEVLSWDREGNRTT 88 (398)
T ss_dssp --CCEEEEEC-CSSHHHHGGGHHHHHHHHHTTCEEEEEEEGG---GHHHHHHTTCCEEEEESSCCHHHHHSBCTTSCBCC
T ss_pred CCceEEEEEc-CCCcchHHHHHHHHHHHHHCCCEEEEEcCHH---HHHHHHhCCCeeEecCCccchHhhhhhhccCcccc
Confidence 4457887765 4589999999999999999999999998632 111111112222222110000 00000
Q ss_pred cccChHHHHHHHHHHhhccHHHHHHHHHHHHhcCCCcEEEECC-CchHHHHHHHhCCcEEEEec-Cc-hhHHHHhhhhhc
Q 003222 84 LTVDRLASLEKYSETAVAPRKSILKDEVEWLNSIKADLVVSDV-VPVACRAAADAGIRSVCVTN-FS-WDFIYAEYVMAA 160 (838)
Q Consensus 84 ~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~L~~~kPDlVVsD~-~~~~~~aA~~lgIP~V~is~-~~-~~~i~~~~~~~~ 160 (838)
........+......+.......+.+..+++++++||+||+|. .+++.++|+.+|||++.+.. +. +.......
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~pDlVv~d~~~~~~~~~a~~~giP~v~~~~~~~~~~~~~~~~---- 164 (398)
T 4fzr_A 89 MPREEKPLLEHIGRGYGRLVLRMRDEALALAERWKPDLVLTETYSLTGPLVAATLGIPWIEQSIRLASPELIKSAG---- 164 (398)
T ss_dssp CCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCSEEEEETTCTHHHHHHHHHTCCEEEECCSSCCCHHHHHHH----
T ss_pred cccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCEEEECccccHHHHHHHhhCCCEEEeccCCCCchhhhHHH----
Confidence 0011111121122221112233455667888999999999985 67788899999999988742 21 11111100
Q ss_pred ccchHHHHHHHHhhccc-----cceEEe-cCCCCCCCCCCc---eeecCcccccCCcChHHHHHHhCCCCCCcEEEEEcC
Q 003222 161 GHHHRSIVWQIAEDYSH-----CEFLIR-LPGYCPMPAFRD---VIDVPLVVRRLHKSRKEVRKELGIEDDVKLLILNFG 231 (838)
Q Consensus 161 ~~~~~~i~~~l~~~y~~-----~d~ll~-~~~~~~~p~~~~---v~~ip~~~~~~~~~~~~~r~~l~~~~~~~~Vlvs~G 231 (838)
..++.. ....|.. .+..+. .+.....+.... +..+|... .+.++.+++...+++++||+++|
T Consensus 165 ---~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~v~v~~G 235 (398)
T 4fzr_A 165 ---VGELAP-ELAELGLTDFPDPLLSIDVCPPSMEAQPKPGTTKMRYVPYNG-----RNDQVPSWVFEERKQPRLCLTFG 235 (398)
T ss_dssp ---HHHTHH-HHHTTTCSSCCCCSEEEECSCGGGC----CCCEECCCCCCCC-----SSCCCCHHHHSCCSSCEEECC--
T ss_pred ---HHHHHH-HHHHcCCCCCCCCCeEEEeCChhhCCCCCCCCCCeeeeCCCC-----CCCCCchhhhcCCCCCEEEEEcc
Confidence 011111 1122211 122221 111111110000 11111110 11112223333357789999999
Q ss_pred CCCc---------h----hhhHHhhCCCCcEEEEe-CCCCC----CCCCCeEECCCCCCHHHHHhhcCEEEecCChhhHH
Q 003222 232 GQPA---------G----WKLKEEYLPSGWKCLVC-GASDS----QLPPNFIKLPKDAYTPDFMAASDCMLGKIGYGTVS 293 (838)
Q Consensus 232 s~~~---------~----~~ll~~l~~~~~~~vv~-G~~~~----~lp~nv~~~~~~~~~pdlLa~adl~It~gG~~Tv~ 293 (838)
+... . ..+++.+...++.+++. |.... .+++||++.+|.+ ++++|++||+||+|||++|++
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~v~~~~~~~~~~l~~~~~~v~~~~~~~-~~~ll~~ad~~v~~gG~~t~~ 314 (398)
T 4fzr_A 236 TRVPLPNTNTIPGGLSLLQALSQELPKLGFEVVVAVSDKLAQTLQPLPEGVLAAGQFP-LSAIMPACDVVVHHGGHGTTL 314 (398)
T ss_dssp --------------CCSHHHHHHHGGGGTCEEEECCCC--------CCTTEEEESCCC-HHHHGGGCSEEEECCCHHHHH
T ss_pred CcccccccccccchHHHHHHHHHHHHhCCCEEEEEeCCcchhhhccCCCcEEEeCcCC-HHHHHhhCCEEEecCCHHHHH
Confidence 9842 1 22334444446666655 33221 2689999999874 789999999999999999999
Q ss_pred HHHHcCCcEEEEeCCCCCChHHHHHHHHHcCcEEEEecCCCChhhHHHHHHHHhhCC
Q 003222 294 EALAYKLPFVFVRRDYFNEEPFLRNMLEFYQGGVEMIRRDLLTGHWKPYLERAISLK 350 (838)
Q Consensus 294 Eal~~GvP~l~iP~~~~~EQ~~Na~~l~~~G~g~~l~~~~~~~~~l~~~l~~ll~~~ 350 (838)
||+++|+|+|++| .+.||..|++++++.|+|+.+...+++++.+.++|.++++++
T Consensus 315 Ea~~~G~P~v~~p--~~~~q~~~a~~~~~~g~g~~~~~~~~~~~~l~~ai~~ll~~~ 369 (398)
T 4fzr_A 315 TCLSEGVPQVSVP--VIAEVWDSARLLHAAGAGVEVPWEQAGVESVLAACARIRDDS 369 (398)
T ss_dssp HHHHTTCCEEECC--CSGGGHHHHHHHHHTTSEEECC-------CHHHHHHHHHHCT
T ss_pred HHHHhCCCEEecC--CchhHHHHHHHHHHcCCEEecCcccCCHHHHHHHHHHHHhCH
Confidence 9999999999998 578999999999999999999888888899999999999876
|
| >1rrv_A Glycosyltransferase GTFD; GT-B, glycosyltransferase, rossmann fold, glycopeptide, VACO antibiotic, transferase-antibiotic complex; HET: OMZ GHP OMY 3FG TYD BGC; 2.00A {Amycolatopsis orientalis} SCOP: c.87.1.5 | Back alignment and structure |
|---|
Probab=99.93 E-value=3.5e-24 Score=242.60 Aligned_cols=334 Identities=10% Similarity=0.017 Sum_probs=200.7
Q ss_pred EEEEEeecCCCcccHHHHHHHHHHHHHCCCeEEEEeCCCCcccccccCCCceeeeeeccCC-CcccccccccChHHHHHH
Q 003222 16 LVFAYYVTGHGFGHATRVVEVVRNLISAGHDVHVVTGAPDFVFTSEIQSPRLFIRKVLLDC-GAVQADALTVDRLASLEK 94 (838)
Q Consensus 16 ~~Il~~v~g~G~GHv~r~laLA~~L~~~Gh~V~~v~~~~~~~~~~~i~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~l~~ 94 (838)
|+|+++ ++.+.||+.|+++||++|+++||+|+|++... +...+...++.+....... +.... .........+
T Consensus 1 MrIl~~-~~~~~GH~~p~l~la~~L~~~Gh~V~~~~~~~---~~~~v~~~g~~~~~~~~~~~~~~~~-~~~~~~~~~~-- 73 (416)
T 1rrv_A 1 MRVLLS-VCGTRGDVEIGVALADRLKALGVQTRMCAPPA---AEERLAEVGVPHVPVGLPQHMMLQE-GMPPPPPEEE-- 73 (416)
T ss_dssp CEEEEE-EESCHHHHHHHHHHHHHHHHTTCEEEEEECGG---GHHHHHHHTCCEEECSCCGGGCCCT-TSCCCCHHHH--
T ss_pred CeEEEE-ecCCCccHHHHHHHHHHHHHCCCeEEEEeCHH---HHHHHHHcCCeeeecCCCHHHHHhh-ccccchhHHH--
Confidence 367666 56789999999999999999999999998753 1121111123333321110 11100 0000111011
Q ss_pred HHHHhhccHHHHHHHHHHHHh--cCCCcEEEECC--Cch--HHHHHHHhCCcEEEEecCc-hhHHHHhhhh------h-c
Q 003222 95 YSETAVAPRKSILKDEVEWLN--SIKADLVVSDV--VPV--ACRAAADAGIRSVCVTNFS-WDFIYAEYVM------A-A 160 (838)
Q Consensus 95 ~~~~~~~~~~~~l~~~~~~L~--~~kPDlVVsD~--~~~--~~~aA~~lgIP~V~is~~~-~~~i~~~~~~------~-~ 160 (838)
..++. ....+..+.++ ..+||+||+|. .++ +..+|+.+|||.+.+.... +... .+.+ . .
T Consensus 74 -~~~~~----~~~~~~~~~l~~~~~~pD~vi~d~~~~~~~~~~~~A~~~giP~v~~~~~~~~~~~--~~~p~~~~~~~~~ 146 (416)
T 1rrv_A 74 -QRLAA----MTVEMQFDAVPGAAEGCAAVVAVGDLAAATGVRSVAEKLGLPFFYSVPSPVYLAS--PHLPPAYDEPTTP 146 (416)
T ss_dssp -HHHHH----HHHHHHHHHHHHHTTTCSEEEEEECHHHHHHHHHHHHHHTCCEEEEESSGGGSCC--SSSCCCBCSCCCT
T ss_pred -HHHHH----HHHHHHHHHHHHHhcCCCEEEEcCchHHHHHHHHHHHHcCCCEEEEeCCCCCCCC--cccCCCCCCCCCc
Confidence 11110 11122233333 67999999995 455 7888999999999874322 1100 0000 0 0
Q ss_pred ccc--------hH--------HHHHHHHhhccc------------cceEEecCCCCC--CCCCCceeecCccccc-CCcC
Q 003222 161 GHH--------HR--------SIVWQIAEDYSH------------CEFLIRLPGYCP--MPAFRDVIDVPLVVRR-LHKS 209 (838)
Q Consensus 161 ~~~--------~~--------~i~~~l~~~y~~------------~d~ll~~~~~~~--~p~~~~v~~ip~~~~~-~~~~ 209 (838)
+.. .+ ...+.+...+.. .-.++..+.... .+.. ++..+|+.... ....
T Consensus 147 ~r~~n~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~-~~~~vG~~~~~~~~~~ 225 (416)
T 1rrv_A 147 GVTDIRVLWEERAARFADRYGPTLNRRRAEIGLPPVEDVFGYGHGERPLLAADPVLAPLQPDV-DAVQTGAWLLSDERPL 225 (416)
T ss_dssp TCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCSCHHHHTTCSSCEECSCTTTSCCCSSC-CCEECCCCCCCCCCCC
T ss_pred hHHHHHHHHHHHHHHHHHHhHHHHHHHHHHcCCCCCCchhhhccCCCeEEccCccccCCCCCC-CeeeECCCccCccCCC
Confidence 000 00 001111111110 001221222111 1111 55667765443 2223
Q ss_pred hHHHHHHhCCCCCCcEEEEEcCCCCc--hhh----hHHhhCCCCcEEE-EeCCCCC---CCCCCeEECCCCCCHHHHHhh
Q 003222 210 RKEVRKELGIEDDVKLLILNFGGQPA--GWK----LKEEYLPSGWKCL-VCGASDS---QLPPNFIKLPKDAYTPDFMAA 279 (838)
Q Consensus 210 ~~~~r~~l~~~~~~~~Vlvs~Gs~~~--~~~----ll~~l~~~~~~~v-v~G~~~~---~lp~nv~~~~~~~~~pdlLa~ 279 (838)
+.++.++++ .++++|||++||.+. ..+ +++++...++.++ ++|.... .+|+|+++.+|.+ +.++|++
T Consensus 226 ~~~~~~~l~--~~~~~v~v~~Gs~~~~~~~~~~~~~~~al~~~~~~~v~~~g~~~~~~~~~~~~v~~~~~~~-~~~ll~~ 302 (416)
T 1rrv_A 226 PPELEAFLA--AGSPPVHIGFGSSSGRGIADAAKVAVEAIRAQGRRVILSRGWTELVLPDDRDDCFAIDEVN-FQALFRR 302 (416)
T ss_dssp CHHHHHHHH--SSSCCEEECCTTCCSHHHHHHHHHHHHHHHHTTCCEEEECTTTTCCCSCCCTTEEEESSCC-HHHHGGG
T ss_pred CHHHHHHHh--cCCCeEEEecCCCCccChHHHHHHHHHHHHHCCCeEEEEeCCccccccCCCCCEEEeccCC-hHHHhcc
Confidence 566777764 245789999999874 222 3333333345444 4575432 2688999988875 6799999
Q ss_pred cCEEEecCChhhHHHHHHcCCcEEEEeCCCCCChHHHHHHHHHcCcEEEEecCCCChhhHHHHHHHHhhCCCCcc-----
Q 003222 280 SDCMLGKIGYGTVSEALAYKLPFVFVRRDYFNEEPFLRNMLEFYQGGVEMIRRDLLTGHWKPYLERAISLKPCYE----- 354 (838)
Q Consensus 280 adl~It~gG~~Tv~Eal~~GvP~l~iP~~~~~EQ~~Na~~l~~~G~g~~l~~~~~~~~~l~~~l~~ll~~~~~~~----- 354 (838)
||+||||||+||++||+++|+|+|++| .+.||..|++++++.|+|+.+...+++++.+.++|+++ .++....
T Consensus 303 ~d~~v~~~G~~t~~Ea~~~G~P~i~~p--~~~dQ~~na~~l~~~g~g~~~~~~~~~~~~l~~~i~~l-~~~~~~~~~~~~ 379 (416)
T 1rrv_A 303 VAAVIHHGSAGTEHVATRAGVPQLVIP--RNTDQPYFAGRVAALGIGVAHDGPTPTFESLSAALTTV-LAPETRARAEAV 379 (416)
T ss_dssp SSEEEECCCHHHHHHHHHHTCCEEECC--CSBTHHHHHHHHHHHTSEEECSSSCCCHHHHHHHHHHH-TSHHHHHHHHHH
T ss_pred CCEEEecCChhHHHHHHHcCCCEEEcc--CCCCcHHHHHHHHHCCCccCCCCCCCCHHHHHHHHHHh-hCHHHHHHHHHH
Confidence 999999999999999999999999999 57899999999999999999988788889999999998 7653111
Q ss_pred ----CCCCHHHHHHHHH-HHHh
Q 003222 355 ----GGINGGEVAAHIL-QETA 371 (838)
Q Consensus 355 ----~~~~g~~~~a~~i-~~~~ 371 (838)
...+|+ +++++| ++++
T Consensus 380 ~~~~~~~~~~-~~~~~i~e~~~ 400 (416)
T 1rrv_A 380 AGMVLTDGAA-AAADLVLAAVG 400 (416)
T ss_dssp TTTCCCCHHH-HHHHHHHHHHH
T ss_pred HHHHhhcCcH-HHHHHHHHHHh
Confidence 357788 888888 7764
|
| >2yjn_A ERYCIII, glycosyltransferase; transferase, cytochrome P450; 3.09A {Saccharopolyspora erythraea} | Back alignment and structure |
|---|
Probab=99.93 E-value=1e-24 Score=249.04 Aligned_cols=346 Identities=15% Similarity=0.108 Sum_probs=204.7
Q ss_pred CceEEEEEeecCCCcccHHHHHHHHHHHHHCCCeEEEEeCCCCcccccccCCCceeeeeeccCC---Cccccc--c----
Q 003222 13 SKHLVFAYYVTGHGFGHATRVVEVVRNLISAGHDVHVVTGAPDFVFTSEIQSPRLFIRKVLLDC---GAVQAD--A---- 83 (838)
Q Consensus 13 m~~~~Il~~v~g~G~GHv~r~laLA~~L~~~Gh~V~~v~~~~~~~~~~~i~~~~~~~~~~~~~~---g~~~~~--~---- 83 (838)
+..|+|+|+ ++.+.||+.|+++||++|+++||+|+|++... +...+...++.+....... +..... .
T Consensus 18 ~~~mrIl~~-~~~~~GHv~p~l~la~~L~~~GheV~~~~~~~---~~~~v~~~G~~~~~i~~~~~~~~~~~~~~~~~~~~ 93 (441)
T 2yjn_A 18 GSHMRVVFS-SMASKSHLFGLVPLAWAFRAAGHEVRVVASPA---LTEDITAAGLTAVPVGTDVDLVDFMTHAGHDIIDY 93 (441)
T ss_dssp -CCCEEEEE-CCSCHHHHTTTHHHHHHHHHTTCEEEEEECGG---GHHHHHTTTCCEEECSCCCCHHHHHHHTTHHHHHH
T ss_pred CCccEEEEE-cCCCcchHhHHHHHHHHHHHCCCeEEEEeCch---hHHHHHhCCCceeecCCccchHHHhhhhhcccccc
Confidence 334678776 67788999999999999999999999998743 2222222234444321111 110000 0
Q ss_pred ---cc-----cC--hHHHHHH----HHHHhhccH-HH-HHHHHHHHHhcCCCcEEEECC-CchHHHHHHHhCCcEEEEec
Q 003222 84 ---LT-----VD--RLASLEK----YSETAVAPR-KS-ILKDEVEWLNSIKADLVVSDV-VPVACRAAADAGIRSVCVTN 146 (838)
Q Consensus 84 ---~~-----~~--~~~~l~~----~~~~~~~~~-~~-~l~~~~~~L~~~kPDlVVsD~-~~~~~~aA~~lgIP~V~is~ 146 (838)
.. .. ....+.. +...+.... .. .+.+..+.+++++||+||+|. .+++..+|+.+|||++.+..
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~pDlVv~d~~~~~~~~aA~~lgiP~v~~~~ 173 (441)
T 2yjn_A 94 VRSLDFSERDPATLTWEHLLGMQTVLTPTFYALMSPDTLIEGMVSFCRKWRPDLVIWEPLTFAAPIAAAVTGTPHARLLW 173 (441)
T ss_dssp HTTCCCTTCCGGGGSHHHHHHHHHHHHHHTTTTSSCHHHHHHHHHHHHHHCCSEEEECTTCTHHHHHHHHHTCCEEEECS
T ss_pred cccccccccCcchhhhhhhhhHHHHHHHHHHhhcchHHHHHHHHHHHHhcCCCEEEecCcchhHHHHHHHcCCCEEEEec
Confidence 00 00 0001101 111111000 01 455667778899999999996 67888999999999998832
Q ss_pred Cchh---HHHHhhhhhc---c-----cchHHHHHHHHhhccc---------cceEEe-cCCCCCCC-CCC--ceeecCcc
Q 003222 147 FSWD---FIYAEYVMAA---G-----HHHRSIVWQIAEDYSH---------CEFLIR-LPGYCPMP-AFR--DVIDVPLV 202 (838)
Q Consensus 147 ~~~~---~i~~~~~~~~---~-----~~~~~i~~~l~~~y~~---------~d~ll~-~~~~~~~p-~~~--~v~~ip~~ 202 (838)
.+. .....+.... + .............+.. .+..+. ++.....+ ..+ .+..+|.
T Consensus 174 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~- 251 (441)
T 2yjn_A 174 -GPDITTRARQNFLGLLPDQPEEHREDPLAEWLTWTLEKYGGPAFDEEVVVGQWTIDPAPAAIRLDTGLKTVGMRYVDY- 251 (441)
T ss_dssp -SCCHHHHHHHHHHHHGGGSCTTTCCCHHHHHHHHHHHHTTCCCCCGGGTSCSSEEECSCGGGSCCCCCCEEECCCCCC-
T ss_pred -CCCcchhhhhhhhhhccccccccccchHHHHHHHHHHHcCCCCCCccccCCCeEEEecCccccCCCCCCCCceeeeCC-
Confidence 211 1111110000 0 0011111222222211 111221 11111111 000 0111111
Q ss_pred cccCCcChHHHHHHhCCCCCCcEEEEEcCCCCch--------hhhHHhhCCCCcEEEEe-CCCCC----CCCCCeEECCC
Q 003222 203 VRRLHKSRKEVRKELGIEDDVKLLILNFGGQPAG--------WKLKEEYLPSGWKCLVC-GASDS----QLPPNFIKLPK 269 (838)
Q Consensus 203 ~~~~~~~~~~~r~~l~~~~~~~~Vlvs~Gs~~~~--------~~ll~~l~~~~~~~vv~-G~~~~----~lp~nv~~~~~ 269 (838)
..+.++.++++..+++++||+++||.+.. ..+++++...++.+++. |.... .+++||++.+|
T Consensus 252 -----~~~~~~~~~l~~~~~~~~v~v~~Gs~~~~~~~~~~~~~~~~~al~~~~~~~v~~~g~~~~~~l~~~~~~v~~~~~ 326 (441)
T 2yjn_A 252 -----NGPSVVPEWLHDEPERRRVCLTLGISSRENSIGQVSIEELLGAVGDVDAEIIATFDAQQLEGVANIPDNVRTVGF 326 (441)
T ss_dssp -----CSSCCCCGGGSSCCSSCEEEEEC----------CCSTTTTHHHHHTSSSEEEECCCTTTTSSCSSCCSSEEECCS
T ss_pred -----CCCcccchHhhcCCCCCEEEEECCCCcccccChHHHHHHHHHHHHcCCCEEEEEECCcchhhhccCCCCEEEecC
Confidence 01123345665445778999999998742 13344444446666654 43221 25789999888
Q ss_pred CCCHHHHHhhcCEEEecCChhhHHHHHHcCCcEEEEeCCCCCChHHHHHHHHHcCcEEEEecCCCChhhHHHHHHHHhhC
Q 003222 270 DAYTPDFMAASDCMLGKIGYGTVSEALAYKLPFVFVRRDYFNEEPFLRNMLEFYQGGVEMIRRDLLTGHWKPYLERAISL 349 (838)
Q Consensus 270 ~~~~pdlLa~adl~It~gG~~Tv~Eal~~GvP~l~iP~~~~~EQ~~Na~~l~~~G~g~~l~~~~~~~~~l~~~l~~ll~~ 349 (838)
++. .++|++||+||+|||++|++|++++|+|+|++| .+.||..|++++++.|+|+.+...+++++.+.++|.+++++
T Consensus 327 ~~~-~~ll~~ad~~V~~~G~~t~~Ea~~~G~P~i~~p--~~~dQ~~na~~l~~~g~g~~~~~~~~~~~~l~~~i~~ll~~ 403 (441)
T 2yjn_A 327 VPM-HALLPTCAATVHHGGPGSWHTAAIHGVPQVILP--DGWDTGVRAQRTQEFGAGIALPVPELTPDQLRESVKRVLDD 403 (441)
T ss_dssp CCH-HHHGGGCSEEEECCCHHHHHHHHHTTCCEEECC--CSHHHHHHHHHHHHHTSEEECCTTTCCHHHHHHHHHHHHHC
T ss_pred CCH-HHHHhhCCEEEECCCHHHHHHHHHhCCCEEEeC--CcccHHHHHHHHHHcCCEEEcccccCCHHHHHHHHHHHhcC
Confidence 764 689999999999999999999999999999999 57899999999999999999988888889999999999987
Q ss_pred CCCcc---------CCCCHHHHHHHHHHHHhc
Q 003222 350 KPCYE---------GGINGGEVAAHILQETAI 372 (838)
Q Consensus 350 ~~~~~---------~~~~g~~~~a~~i~~~~~ 372 (838)
+.... ...+|++++++.|++++.
T Consensus 404 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 435 (441)
T 2yjn_A 404 PAHRAGAARMRDDMLAEPSPAEVVGICEELAA 435 (441)
T ss_dssp HHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 63211 367888899999888764
|
| >3hbf_A Flavonoid 3-O-glucosyltransferase; glycosyltransferase, GT-B fold, GT1, phenylpropanoid metabolism; HET: UDP MYC; 2.10A {Medicago truncatula} SCOP: c.87.1.0 PDB: 3hbj_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=1.7e-23 Score=238.35 Aligned_cols=342 Identities=12% Similarity=0.075 Sum_probs=205.9
Q ss_pred eEEEEEeecCCCcccHHHHHHHHHHHHHCC--CeEEEEeCCC--Ccccccc-cCCCceeeeeeccCCCcccccccccChH
Q 003222 15 HLVFAYYVTGHGFGHATRVVEVVRNLISAG--HDVHVVTGAP--DFVFTSE-IQSPRLFIRKVLLDCGAVQADALTVDRL 89 (838)
Q Consensus 15 ~~~Il~~v~g~G~GHv~r~laLA~~L~~~G--h~V~~v~~~~--~~~~~~~-i~~~~~~~~~~~~~~g~~~~~~~~~~~~ 89 (838)
+.+|++ ++.++.||++|++.||+.|..+| +.|||++... ..+.... ...+.+.+... ..|+........+..
T Consensus 13 ~~hvv~-~P~p~~GHi~P~l~Lak~L~~~g~~~~vT~~~t~~~~~~~~~~~~~~~~~i~~~~i--pdglp~~~~~~~~~~ 89 (454)
T 3hbf_A 13 LLHVAV-LAFPFGTHAAPLLSLVKKIATEAPKVTFSFFCTTTTNDTLFSRSNEFLPNIKYYNV--HDGLPKGYVSSGNPR 89 (454)
T ss_dssp CCEEEE-ECCCSSSSHHHHHHHHHHHHHHCTTSEEEEEECHHHHHHSCSSSSCCCTTEEEEEC--CCCCCTTCCCCSCTT
T ss_pred CCEEEE-EcCCcccHHHHHHHHHHHHHhCCCCEEEEEEeCHHHHHhhhcccccCCCCceEEec--CCCCCCCccccCChH
Confidence 345544 57899999999999999999999 9999997631 1111111 00123555442 123221110111111
Q ss_pred HHHHHHHHHhhccHHHHHHHHH-HHHhc--CCCcEEEECC-CchHHHHHHHhCCcEEEEecCchh--HHH-------Hh-
Q 003222 90 ASLEKYSETAVAPRKSILKDEV-EWLNS--IKADLVVSDV-VPVACRAAADAGIRSVCVTNFSWD--FIY-------AE- 155 (838)
Q Consensus 90 ~~l~~~~~~~~~~~~~~l~~~~-~~L~~--~kPDlVVsD~-~~~~~~aA~~lgIP~V~is~~~~~--~i~-------~~- 155 (838)
..+..+.... ...+++.+ +++++ .+||+||+|+ .+|+..+|+.+|||.+.+...++. ..+ ..
T Consensus 90 ~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~~iI~D~~~~w~~~vA~~lgIP~~~f~t~~a~~~~~~~~~~~~~~~~ 165 (454)
T 3hbf_A 90 EPIFLFIKAM----QENFKHVIDEAVAETGKNITCLVTDAFFWFGADLAEEMHAKWVPLWTAGPHSLLTHVYTDLIREKT 165 (454)
T ss_dssp HHHHHHHHHH----HHHHHHHHHHHHHHHCCCCCEEEEETTCTTHHHHHHHTTCEEEEEECSCHHHHHHHHTHHHHHHTC
T ss_pred HHHHHHHHHH----HHHHHHHHHHHHhhcCCCCcEEEECCcchHHHHHHHHhCCCEEEEeCccHHHHHHHHhhHHHHhhc
Confidence 1122222111 11122222 22332 5789999996 788999999999999887433211 000 00
Q ss_pred ------------hhhhccc--------c--------hHHHHHHHHhhccccceEEecCCCCC--------CCCCCceeec
Q 003222 156 ------------YVMAAGH--------H--------HRSIVWQIAEDYSHCEFLIRLPGYCP--------MPAFRDVIDV 199 (838)
Q Consensus 156 ------------~~~~~~~--------~--------~~~i~~~l~~~y~~~d~ll~~~~~~~--------~p~~~~v~~i 199 (838)
+++..+. . ...+.....+....++.++..++... .+.+++++.|
T Consensus 166 ~~~~~~~~~~~~~iPg~p~~~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~ns~~eLE~~~~~~~~~~~~~v~~v 245 (454)
T 3hbf_A 166 GSKEVHDVKSIDVLPGFPELKASDLPEGVIKDIDVPFATMLHKMGLELPRANAVAINSFATIHPLIENELNSKFKLLLNV 245 (454)
T ss_dssp CHHHHTTSSCBCCSTTSCCBCGGGSCTTSSSCTTSHHHHHHHHHHHHGGGSSCEEESSCGGGCHHHHHHHHTTSSCEEEC
T ss_pred CCCccccccccccCCCCCCcChhhCchhhccCCchHHHHHHHHHHHhhccCCEEEECChhHhCHHHHHHHHhcCCCEEEE
Confidence 0111000 0 00111112223333444443222110 2334678889
Q ss_pred Cccccc-C---CcChHHHHHHhCCCCCCcEEEEEcCCCCch-h----hhHHhhCCCCcEEEE-eCCCC-----CC----C
Q 003222 200 PLVVRR-L---HKSRKEVRKELGIEDDVKLLILNFGGQPAG-W----KLKEEYLPSGWKCLV-CGASD-----SQ----L 260 (838)
Q Consensus 200 p~~~~~-~---~~~~~~~r~~l~~~~~~~~Vlvs~Gs~~~~-~----~ll~~l~~~~~~~vv-~G~~~-----~~----l 260 (838)
||+... + ...+.++.+||+..+++++|||+|||.+.. . ++...+...++.+++ +|... +. .
T Consensus 246 GPl~~~~~~~~~~~~~~~~~wLd~~~~~~vVyvsfGS~~~~~~~~~~el~~~l~~~~~~flw~~~~~~~~~lp~~~~~~~ 325 (454)
T 3hbf_A 246 GPFNLTTPQRKVSDEHGCLEWLDQHENSSVVYISFGSVVTPPPHELTALAESLEECGFPFIWSFRGDPKEKLPKGFLERT 325 (454)
T ss_dssp CCHHHHSCCSCCCCTTCHHHHHHTSCTTCEEEEECCSSCCCCHHHHHHHHHHHHHHCCCEEEECCSCHHHHSCTTHHHHT
T ss_pred CCcccccccccccchHHHHHHHhcCCCCceEEEecCCCCcCCHHHHHHHHHHHHhCCCeEEEEeCCcchhcCCHhHHhhc
Confidence 986542 1 122456888998777889999999999862 1 233344334554443 45431 11 3
Q ss_pred CCCeEECCCCCCHHHHHhhcC--EEEecCChhhHHHHHHcCCcEEEEeCCCCCChHHHHHHHHH-cCcEEEEecCCCChh
Q 003222 261 PPNFIKLPKDAYTPDFMAASD--CMLGKIGYGTVSEALAYKLPFVFVRRDYFNEEPFLRNMLEF-YQGGVEMIRRDLLTG 337 (838)
Q Consensus 261 p~nv~~~~~~~~~pdlLa~ad--l~It~gG~~Tv~Eal~~GvP~l~iP~~~~~EQ~~Na~~l~~-~G~g~~l~~~~~~~~ 337 (838)
++|+.+++|.+. .++|+|++ +||||||+||++|++++|||+|++| .+.||+.||+++++ .|+|+.+...+++.+
T Consensus 326 ~~~~~vv~w~Pq-~~vL~h~~v~~fvtH~G~~S~~Eal~~GvP~i~~P--~~~DQ~~Na~~v~~~~g~Gv~l~~~~~~~~ 402 (454)
T 3hbf_A 326 KTKGKIVAWAPQ-VEILKHSSVGVFLTHSGWNSVLECIVGGVPMISRP--FFGDQGLNTILTESVLEIGVGVDNGVLTKE 402 (454)
T ss_dssp TTTEEEESSCCH-HHHHHSTTEEEEEECCCHHHHHHHHHHTCCEEECC--CSTTHHHHHHHHHTTSCSEEECGGGSCCHH
T ss_pred CCceEEEeeCCH-HHHHhhcCcCeEEecCCcchHHHHHHcCCCEecCc--ccccHHHHHHHHHHhhCeeEEecCCCCCHH
Confidence 568888654332 28999988 9999999999999999999999999 68999999999999 499999988889999
Q ss_pred hHHHHHHHHhhCCCCccCCCCHHHHHHHHHHHHh
Q 003222 338 HWKPYLERAISLKPCYEGGINGGEVAAHILQETA 371 (838)
Q Consensus 338 ~l~~~l~~ll~~~~~~~~~~~g~~~~a~~i~~~~ 371 (838)
.+.++|+++++++ .....++.|..|.+.+
T Consensus 403 ~l~~av~~ll~~~-----~~~~~r~~a~~l~~~~ 431 (454)
T 3hbf_A 403 SIKKALELTMSSE-----KGGIMRQKIVKLKESA 431 (454)
T ss_dssp HHHHHHHHHHSSH-----HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCC-----hHHHHHHHHHHHHHHH
Confidence 9999999999643 1123455666666654
|
| >3oti_A CALG3; calicheamicin, TDP, structural genomics, PSI-2, protein STRU initiative, center for eukaryotic structural genomics, CESG fold; HET: TYD C0T; 1.60A {Micromonospora echinospora} PDB: 3d0q_A* 3d0r_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=2.9e-24 Score=241.58 Aligned_cols=330 Identities=14% Similarity=0.093 Sum_probs=194.1
Q ss_pred EEEEEeecCCCcccHHHHHHHHHHHHHCCCeEEEEeCCCCcccccccCCCceeeeeeccCCCccc---cc----------
Q 003222 16 LVFAYYVTGHGFGHATRVVEVVRNLISAGHDVHVVTGAPDFVFTSEIQSPRLFIRKVLLDCGAVQ---AD---------- 82 (838)
Q Consensus 16 ~~Il~~v~g~G~GHv~r~laLA~~L~~~Gh~V~~v~~~~~~~~~~~i~~~~~~~~~~~~~~g~~~---~~---------- 82 (838)
|+|+|++. .+.||++++++||++|+++||+|+|++. . +...+...++.+.....+..+.. ..
T Consensus 21 MrIl~~~~-~~~Ghv~~~~~La~~L~~~GheV~v~~~-~---~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (398)
T 3oti_A 21 MRVLFVSS-PGIGHLFPLIQLAWGFRTAGHDVLIAVA-E---HADRAAAAGLEVVDVAPDYSAVKVFEQVAKDNPRFAET 95 (398)
T ss_dssp CEEEEECC-SSHHHHGGGHHHHHHHHHTTCEEEEEES-S---CHHHHHTTTCEEEESSTTCCHHHHHHHHHHHCHHHHHT
T ss_pred CEEEEEcC-CCcchHhHHHHHHHHHHHCCCEEEEecc-c---hHHHHHhCCCeeEecCCccCHHHHhhhcccCCcccccc
Confidence 67877654 5899999999999999999999999987 3 22222223344433211100000 00
Q ss_pred ---ccccChHHHHHHHHHHhhccHHHHHHHHHHHHhcCCCcEEEECC-CchHHHHHHHhCCcEEEEec-CchhHHHHhhh
Q 003222 83 ---ALTVDRLASLEKYSETAVAPRKSILKDEVEWLNSIKADLVVSDV-VPVACRAAADAGIRSVCVTN-FSWDFIYAEYV 157 (838)
Q Consensus 83 ---~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~L~~~kPDlVVsD~-~~~~~~aA~~lgIP~V~is~-~~~~~i~~~~~ 157 (838)
............+... ....+.+..+++++++||+||+|. .+.+.++|+.++||++.+.. +.....+....
T Consensus 96 ~~~~~~~~~~~~~~~~~~~----~~~~~~~l~~~l~~~~pDlVv~d~~~~~~~~aA~~~giP~v~~~~~~~~~~~~~~~~ 171 (398)
T 3oti_A 96 VATRPAIDLEEWGVQIAAV----NRPLVDGTMALVDDYRPDLVVYEQGATVGLLAADRAGVPAVQRNQSAWRTRGMHRSI 171 (398)
T ss_dssp GGGSCCCSGGGGHHHHHHH----HGGGHHHHHHHHHHHCCSEEEEETTCHHHHHHHHHHTCCEEEECCTTCCCTTHHHHH
T ss_pred ccCChhhhHHHHHHHHHHH----HHHHHHHHHHHHHHcCCCEEEECchhhHHHHHHHHcCCCEEEEeccCCCccchhhHH
Confidence 0000000001111111 122455667888999999999985 66688899999999987632 11000000000
Q ss_pred hhcccchHHHHHHHHhhccc----cceEEe-cCCCCCCCCCCceeecCcccccCCcChHHHHHHhCCCCCCcEEEEEcCC
Q 003222 158 MAAGHHHRSIVWQIAEDYSH----CEFLIR-LPGYCPMPAFRDVIDVPLVVRRLHKSRKEVRKELGIEDDVKLLILNFGG 232 (838)
Q Consensus 158 ~~~~~~~~~i~~~l~~~y~~----~d~ll~-~~~~~~~p~~~~v~~ip~~~~~~~~~~~~~r~~l~~~~~~~~Vlvs~Gs 232 (838)
. ..... ..+.|.. .+..+. .+.....+. .....|.... +...+....+++...+++++||+++|+
T Consensus 172 ~---~~l~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~v~v~~G~ 241 (398)
T 3oti_A 172 A---SFLTD----LMDKHQVSLPEPVATIESFPPSLLLEA--EPEGWFMRWV-PYGGGAVLGDRLPPVPARPEVAITMGT 241 (398)
T ss_dssp H---TTCHH----HHHHTTCCCCCCSEEECSSCGGGGTTS--CCCSBCCCCC-CCCCCEECCSSCCCCCSSCEEEECCTT
T ss_pred H---HHHHH----HHHHcCCCCCCCCeEEEeCCHHHCCCC--CCCCCCcccc-CCCCCcCCchhhhcCCCCCEEEEEcCC
Confidence 0 00111 1122211 121221 111111110 0001111000 000111122334444578899999999
Q ss_pred CCc---h----hhhHHhhCCCCcEEEEe-CCCCC----CCCCCeEECCCCCCHHHHHhhcCEEEecCChhhHHHHHHcCC
Q 003222 233 QPA---G----WKLKEEYLPSGWKCLVC-GASDS----QLPPNFIKLPKDAYTPDFMAASDCMLGKIGYGTVSEALAYKL 300 (838)
Q Consensus 233 ~~~---~----~~ll~~l~~~~~~~vv~-G~~~~----~lp~nv~~~~~~~~~pdlLa~adl~It~gG~~Tv~Eal~~Gv 300 (838)
... + ..+++.+...++.+++. |.... .+++||++.+|. .++++|++||+||+|||++|++||+++|+
T Consensus 242 ~~~~~~~~~~~~~~~~~l~~~~~~~v~~~g~~~~~~l~~~~~~v~~~~~~-~~~~ll~~ad~~v~~~G~~t~~Eal~~G~ 320 (398)
T 3oti_A 242 IELQAFGIGAVEPIIAAAGEVDADFVLALGDLDISPLGTLPRNVRAVGWT-PLHTLLRTCTAVVHHGGGGTVMTAIDAGI 320 (398)
T ss_dssp THHHHHCGGGHHHHHHHHHTSSSEEEEECTTSCCGGGCSCCTTEEEESSC-CHHHHHTTCSEEEECCCHHHHHHHHHHTC
T ss_pred CccccCcHHHHHHHHHHHHcCCCEEEEEECCcChhhhccCCCcEEEEccC-CHHHHHhhCCEEEECCCHHHHHHHHHhCC
Confidence 843 1 12333444456766554 44322 268899999988 68899999999999999999999999999
Q ss_pred cEEEEeCCCCCChHHHH--HHHHHcCcEEEEecCCCChhhHHHHHHHHhhCCCCcc---------CCCCHHHHHHHHHHH
Q 003222 301 PFVFVRRDYFNEEPFLR--NMLEFYQGGVEMIRRDLLTGHWKPYLERAISLKPCYE---------GGINGGEVAAHILQE 369 (838)
Q Consensus 301 P~l~iP~~~~~EQ~~Na--~~l~~~G~g~~l~~~~~~~~~l~~~l~~ll~~~~~~~---------~~~~g~~~~a~~i~~ 369 (838)
|+|++| .+.||..|+ +++++.|+|+.++..+++++.+. ++++++.... ....+++++++.|++
T Consensus 321 P~v~~p--~~~dq~~~a~~~~~~~~g~g~~~~~~~~~~~~l~----~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 394 (398)
T 3oti_A 321 PQLLAP--DPRDQFQHTAREAVSRRGIGLVSTSDKVDADLLR----RLIGDESLRTAAREVREEMVALPTPAETVRRIVE 394 (398)
T ss_dssp CEEECC--CTTCCSSCTTHHHHHHHTSEEECCGGGCCHHHHH----HHHHCHHHHHHHHHHHHHHHTSCCHHHHHHHHHH
T ss_pred CEEEcC--CCchhHHHHHHHHHHHCCCEEeeCCCCCCHHHHH----HHHcCHHHHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 999998 578999999 99999999999988777755554 6666653211 356778888888877
Q ss_pred Hh
Q 003222 370 TA 371 (838)
Q Consensus 370 ~~ 371 (838)
++
T Consensus 395 l~ 396 (398)
T 3oti_A 395 RI 396 (398)
T ss_dssp HH
T ss_pred Hh
Confidence 64
|
| >2vch_A Hydroquinone glucosyltransferase; glycosyltransferase, N-glucosyltransferase, UDP-glucose- dependent, plant glycosyltransferase; HET: UDP; 1.45A {Arabidopsis thaliana} SCOP: c.87.1.10 PDB: 2vce_A* 2vg8_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=4.2e-23 Score=238.05 Aligned_cols=318 Identities=15% Similarity=0.115 Sum_probs=189.2
Q ss_pred EEEEEeecCCCcccHHHHHHHHHHHHHC-CCeEEEEeCCCCcccccccC------CCceeeeeeccCCCcccccccccCh
Q 003222 16 LVFAYYVTGHGFGHATRVVEVVRNLISA-GHDVHVVTGAPDFVFTSEIQ------SPRLFIRKVLLDCGAVQADALTVDR 88 (838)
Q Consensus 16 ~~Il~~v~g~G~GHv~r~laLA~~L~~~-Gh~V~~v~~~~~~~~~~~i~------~~~~~~~~~~~~~g~~~~~~~~~~~ 88 (838)
++|++ ++.++.||+.++++||++|+++ ||+|||++..... +...+. ..++.+..... +.........+.
T Consensus 7 ~~vl~-~p~p~~GHv~P~l~La~~L~~r~Gh~Vt~~t~~~~~-~~~~~~~~~~~~~~~i~~~~l~~--~~~~~~~~~~~~ 82 (480)
T 2vch_A 7 PHVAI-IPSPGMGHLIPLVEFAKRLVHLHGLTVTFVIAGEGP-PSKAQRTVLDSLPSSISSVFLPP--VDLTDLSSSTRI 82 (480)
T ss_dssp CEEEE-ECCSCHHHHHHHHHHHHHHHHHHCCEEEEEECCSSS-CC-CHHHHHC-CCTTEEEEECCC--CCCTTSCTTCCH
T ss_pred cEEEE-ecCcchhHHHHHHHHHHHHHhCCCCEEEEEECCCcc-hhhhhhhhccccCCCceEEEcCC--CCCCCCCCchhH
Confidence 34544 4778899999999999999998 9999999875321 111111 13455544311 111000000011
Q ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHhc----CCC-cEEEECC-CchHHHHHHHhCCcEEEEecCchh--HHH------H
Q 003222 89 LASLEKYSETAVAPRKSILKDEVEWLNS----IKA-DLVVSDV-VPVACRAAADAGIRSVCVTNFSWD--FIY------A 154 (838)
Q Consensus 89 ~~~l~~~~~~~~~~~~~~l~~~~~~L~~----~kP-DlVVsD~-~~~~~~aA~~lgIP~V~is~~~~~--~i~------~ 154 (838)
...+..... .......+++++ .+| |+||+|. .+++..+|+.+|||.+.+...... ..+ .
T Consensus 83 ---~~~~~~~~~----~~~~~l~~ll~~~~~~~~~pd~vI~D~~~~~~~~vA~~lgiP~v~~~~~~~~~~~~~~~~~~~~ 155 (480)
T 2vch_A 83 ---ESRISLTVT----RSNPELRKVFDSFVEGGRLPTALVVDLFGTDAFDVAVEFHVPPYIFYPTTANVLSFFLHLPKLD 155 (480)
T ss_dssp ---HHHHHHHHH----TTHHHHHHHHHHHHHTTCCCSEEEECTTCGGGHHHHHHTTCCEEEEECSCHHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHH----hhhHHHHHHHHHhccCCCCCeEEEECCcchhHHHHHHHcCCCEEEEECccHHHHHHHHHHHHHH
Confidence 111111111 111222333433 578 9999996 667888999999999887543311 000 0
Q ss_pred h-------------hhhhcc--------cch-H---HHHHH---HHhhccccceEEecCCCC-----------CCCCCCc
Q 003222 155 E-------------YVMAAG--------HHH-R---SIVWQ---IAEDYSHCEFLIRLPGYC-----------PMPAFRD 195 (838)
Q Consensus 155 ~-------------~~~~~~--------~~~-~---~i~~~---l~~~y~~~d~ll~~~~~~-----------~~p~~~~ 195 (838)
. ..+... ..+ + ..... ....+..+..++..++.. +.+..++
T Consensus 156 ~~~~~~~~~~~~~~~~Pg~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~nt~~ele~~~~~~l~~~~~~~~~ 235 (480)
T 2vch_A 156 ETVSCEFRELTEPLMLPGCVPVAGKDFLDPAQDRKDDAYKWLLHNTKRYKEAEGILVNTFFELEPNAIKALQEPGLDKPP 235 (480)
T ss_dssp HHCCSCGGGCSSCBCCTTCCCBCGGGSCGGGSCTTSHHHHHHHHHHHHGGGCSEEEESCCTTTSHHHHHHHHSCCTTCCC
T ss_pred hcCCCcccccCCcccCCCCCCCChHHCchhhhcCCchHHHHHHHHHHhcccCCEEEEcCHHHHhHHHHHHHHhcccCCCc
Confidence 0 001000 000 0 11111 112222233232212211 1111357
Q ss_pred eeecCcccccC-----CcChHHHHHHhCCCCCCcEEEEEcCCCCch-h----hhHHhhCCCCcEEEE-eCCCC-------
Q 003222 196 VIDVPLVVRRL-----HKSRKEVRKELGIEDDVKLLILNFGGQPAG-W----KLKEEYLPSGWKCLV-CGASD------- 257 (838)
Q Consensus 196 v~~ip~~~~~~-----~~~~~~~r~~l~~~~~~~~Vlvs~Gs~~~~-~----~ll~~l~~~~~~~vv-~G~~~------- 257 (838)
++.+|+..... ...+.++.+|++..+++++|||||||.... . ++..++...+..+++ ++...
T Consensus 236 v~~vGpl~~~~~~~~~~~~~~~~~~wLd~~~~~~vvyvs~GS~~~~~~~~~~~~~~al~~~~~~~lw~~~~~~~~~~~~~ 315 (480)
T 2vch_A 236 VYPVGPLVNIGKQEAKQTEESECLKWLDNQPLGSVLYVSFGSGGTLTCEQLNELALGLADSEQRFLWVIRSPSGIANSSY 315 (480)
T ss_dssp EEECCCCCCCSCSCC-----CHHHHHHHTSCTTCEEEEECTTTCCCCHHHHHHHHHHHHHTTCEEEEEECCCCSSTTTTT
T ss_pred EEEEeccccccccccCccchhHHHHHhcCCCCCceEEEecccccCCCHHHHHHHHHHHHhcCCcEEEEECCccccccccc
Confidence 88888865432 123457788887656789999999998742 2 333345445565543 34321
Q ss_pred ------C----CCCCCe--------EECCCCCCHH--HHHhhcC--EEEecCChhhHHHHHHcCCcEEEEeCCCCCChHH
Q 003222 258 ------S----QLPPNF--------IKLPKDAYTP--DFMAASD--CMLGKIGYGTVSEALAYKLPFVFVRRDYFNEEPF 315 (838)
Q Consensus 258 ------~----~lp~nv--------~~~~~~~~~p--dlLa~ad--l~It~gG~~Tv~Eal~~GvP~l~iP~~~~~EQ~~ 315 (838)
. .+|+|+ .++. +|+| ++|+|++ +||||||+||++|++++|||+|++| .+.||+.
T Consensus 316 ~~~~~~~~~~~~lp~~~~~~~~~~g~~v~--~w~Pq~~vL~h~~v~~fvtHgG~~S~~Eal~~GvP~i~~P--~~~DQ~~ 391 (480)
T 2vch_A 316 FDSHSQTDPLTFLPPGFLERTKKRGFVIP--FWAPQAQVLAHPSTGGFLTHCGWNSTLESVVSGIPLIAWP--LYAEQKM 391 (480)
T ss_dssp TCC--CSCGGGGSCTTHHHHTTTTEEEEE--SCCCHHHHHHSTTEEEEEECCCHHHHHHHHHHTCCEEECC--CSTTHHH
T ss_pred cccccccchhhhcCHHHHHHhCCCeEEEe--CccCHHHHhCCCCcCeEEecccchhHHHHHHcCCCEEecc--ccccchH
Confidence 1 268886 3332 3666 8998877 8999999999999999999999999 6899999
Q ss_pred HHHHH-HHcCcEEEEecC---CCChhhHHHHHHHHhh
Q 003222 316 LRNML-EFYQGGVEMIRR---DLLTGHWKPYLERAIS 348 (838)
Q Consensus 316 Na~~l-~~~G~g~~l~~~---~~~~~~l~~~l~~ll~ 348 (838)
||+++ ++.|+|+.+... .++.+.+.++|++++.
T Consensus 392 na~~l~~~~G~g~~l~~~~~~~~~~~~l~~av~~vl~ 428 (480)
T 2vch_A 392 NAVLLSEDIRAALRPRAGDDGLVRREEVARVVKGLME 428 (480)
T ss_dssp HHHHHHHTTCCEECCCCCTTSCCCHHHHHHHHHHHHT
T ss_pred HHHHHHHHhCeEEEeecccCCccCHHHHHHHHHHHhc
Confidence 99997 799999999765 6889999999999996
|
| >3tsa_A SPNG, NDP-rhamnosyltransferase; glycosyltransferase; HET: GLC; 1.70A {Saccharopolyspora spinosa} PDB: 3uyk_A* 3uyl_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=1e-23 Score=236.26 Aligned_cols=339 Identities=12% Similarity=0.052 Sum_probs=197.1
Q ss_pred EEEEEeecCCCcccHHHHHHHHHHHHHCCCeEEEEeCCCCcccccccCCCceeeeee-ccCCCcc--------cc-cccc
Q 003222 16 LVFAYYVTGHGFGHATRVVEVVRNLISAGHDVHVVTGAPDFVFTSEIQSPRLFIRKV-LLDCGAV--------QA-DALT 85 (838)
Q Consensus 16 ~~Il~~v~g~G~GHv~r~laLA~~L~~~Gh~V~~v~~~~~~~~~~~i~~~~~~~~~~-~~~~g~~--------~~-~~~~ 85 (838)
|+|+|++. .+.||+++++.|+++|+++||+|+|++... +...+...++.+... +.+.... .. ....
T Consensus 2 MrIl~~~~-~~~gh~~~~~~la~~L~~~GheV~v~~~~~---~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (391)
T 3tsa_A 2 MRVLVVPL-PYPTHLMAMVPLCWALQASGHEVLIAAPPE---LQATAHGAGLTTAGIRGNDRTGDTGGTTQLRFPNPAFG 77 (391)
T ss_dssp CEEEEECC-SCHHHHHTTHHHHHHHHHTTCEEEEEECHH---HHHHHHHBTCEEEEC--------------CCSCCGGGG
T ss_pred cEEEEEcC-CCcchhhhHHHHHHHHHHCCCEEEEecChh---hHHHHHhCCCceeeecCCccchhhhhhhcccccccccc
Confidence 67877654 489999999999999999999999998632 111111112222221 1110000 00 0000
Q ss_pred cChHHHHHH-HHHHhh---ccHHHHHHHHHHHHhcCCCcEEEECC-CchHHHHHHHhCCcEEEEecCchhHHHHhhhhhc
Q 003222 86 VDRLASLEK-YSETAV---APRKSILKDEVEWLNSIKADLVVSDV-VPVACRAAADAGIRSVCVTNFSWDFIYAEYVMAA 160 (838)
Q Consensus 86 ~~~~~~l~~-~~~~~~---~~~~~~l~~~~~~L~~~kPDlVVsD~-~~~~~~aA~~lgIP~V~is~~~~~~i~~~~~~~~ 160 (838)
......+.. +..... .....++.+..+++++++||+||+|. .+.+.++|+.+|||++.+...... ........
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~PD~Vv~~~~~~~~~~aa~~~giP~v~~~~~~~~-~~~~~~~~- 155 (391)
T 3tsa_A 78 QRDTEAGRQLWEQTASNVAQSSLDQLPEYLRLAEAWRPSVLLVDVCALIGRVLGGLLDLPVVLHRWGVDP-TAGPFSDR- 155 (391)
T ss_dssp CTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCSEEEEETTCHHHHHHHHHTTCCEEEECCSCCC-TTTHHHHH-
T ss_pred cccchhHHHHHHHHHHHHhhcchhhHHHHHHHHHhcCCCEEEeCcchhHHHHHHHHhCCCEEEEecCCcc-ccccccch-
Confidence 000011111 111100 00111156668889999999999995 666788899999999887421100 00000000
Q ss_pred ccchHHHHHHHHhhccc-----cceEEe-cCCCCCCCC--C-CceeecCcccccCCcChHHHHHHhCCCCCCcEEEEEcC
Q 003222 161 GHHHRSIVWQIAEDYSH-----CEFLIR-LPGYCPMPA--F-RDVIDVPLVVRRLHKSRKEVRKELGIEDDVKLLILNFG 231 (838)
Q Consensus 161 ~~~~~~i~~~l~~~y~~-----~d~ll~-~~~~~~~p~--~-~~v~~ip~~~~~~~~~~~~~r~~l~~~~~~~~Vlvs~G 231 (838)
...++...+ ..|.. .+..+. .+.....+. . ..+..+|.. .+....+++...+++++|++++|
T Consensus 156 --~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~------~~~~~~~~~~~~~~~~~vlv~~G 226 (391)
T 3tsa_A 156 --AHELLDPVC-RHHGLTGLPTPELILDPCPPSLQASDAPQGAPVQYVPYN------GSGAFPAWGAARTSARRVCICMG 226 (391)
T ss_dssp --HHHHHHHHH-HHTTSSSSCCCSEEEECSCGGGSCTTSCCCEECCCCCCC------CCEECCGGGSSCCSSEEEEEECC
T ss_pred --HHHHHHHHH-HHcCCCCCCCCceEEEecChhhcCCCCCccCCeeeecCC------CCcCCCchhhcCCCCCEEEEEcC
Confidence 011222222 22211 122222 121111110 0 001112110 11111234444457889999999
Q ss_pred CCCc---h-hhhHHhh---CC-CCcEEEEeCCCC-C----CCCCCeEECCCCCCHHHHHhhcCEEEecCChhhHHHHHHc
Q 003222 232 GQPA---G-WKLKEEY---LP-SGWKCLVCGASD-S----QLPPNFIKLPKDAYTPDFMAASDCMLGKIGYGTVSEALAY 298 (838)
Q Consensus 232 s~~~---~-~~ll~~l---~~-~~~~~vv~G~~~-~----~lp~nv~~~~~~~~~pdlLa~adl~It~gG~~Tv~Eal~~ 298 (838)
+... . ..++..+ .. +++.+++.+... . .+++|+++.+|.+ .+++|++||+||+|||++|++||+++
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~~~~~~~~~l~~~~~~v~~~~~~~-~~~ll~~ad~~v~~~G~~t~~Ea~~~ 305 (391)
T 3tsa_A 227 RMVLNATGPAPLLRAVAAATELPGVEAVIAVPPEHRALLTDLPDNARIAESVP-LNLFLRTCELVICAGGSGTAFTATRL 305 (391)
T ss_dssp HHHHHHHCSHHHHHHHHHHHTSTTEEEEEECCGGGGGGCTTCCTTEEECCSCC-GGGTGGGCSEEEECCCHHHHHHHHHT
T ss_pred CCCCcccchHHHHHHHHHhccCCCeEEEEEECCcchhhcccCCCCEEEeccCC-HHHHHhhCCEEEeCCCHHHHHHHHHh
Confidence 8843 1 2222221 22 367666654322 1 2578999988864 46899999999999999999999999
Q ss_pred CCcEEEEeCCCCCChHHHHHHHHHcCcEEEEec--CCCChhhHHHHHHHHhhCCCCcc---------CCCCHHHHHHHHH
Q 003222 299 KLPFVFVRRDYFNEEPFLRNMLEFYQGGVEMIR--RDLLTGHWKPYLERAISLKPCYE---------GGINGGEVAAHIL 367 (838)
Q Consensus 299 GvP~l~iP~~~~~EQ~~Na~~l~~~G~g~~l~~--~~~~~~~l~~~l~~ll~~~~~~~---------~~~~g~~~~a~~i 367 (838)
|+|+|++| .+.||..|++.+++.|+|+.+.. .+.+++.+.++|.++++++.... ....+++++++.|
T Consensus 306 G~P~v~~p--~~~~q~~~a~~~~~~g~g~~~~~~~~~~~~~~l~~ai~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 383 (391)
T 3tsa_A 306 GIPQLVLP--QYFDQFDYARNLAAAGAGICLPDEQAQSDHEQFTDSIATVLGDTGFAAAAIKLSDEITAMPHPAALVRTL 383 (391)
T ss_dssp TCCEEECC--CSTTHHHHHHHHHHTTSEEECCSHHHHTCHHHHHHHHHHHHTCTHHHHHHHHHHHHHHTSCCHHHHHHHH
T ss_pred CCCEEecC--CcccHHHHHHHHHHcCCEEecCcccccCCHHHHHHHHHHHHcCHHHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence 99999998 57899999999999999999987 67788999999999998763211 3567788888888
Q ss_pred HHHhc
Q 003222 368 QETAI 372 (838)
Q Consensus 368 ~~~~~ 372 (838)
++++.
T Consensus 384 ~~~~~ 388 (391)
T 3tsa_A 384 ENTAA 388 (391)
T ss_dssp HHC--
T ss_pred HHHHh
Confidence 87643
|
| >2c1x_A UDP-glucose flavonoid 3-O glycosyltransferase; WINE, catalysis, glycosylation; HET: UDP B3P; 1.9A {Vitis vinifera} SCOP: c.87.1.10 PDB: 2c1z_A* 2c9z_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=2.4e-23 Score=238.54 Aligned_cols=343 Identities=13% Similarity=0.110 Sum_probs=196.9
Q ss_pred eEEEEEeecCCCcccHHHHHHHHHHHHHCCCeE--EEEeCCC--CcccccccC--CCceeeeeeccCCCcccccccccCh
Q 003222 15 HLVFAYYVTGHGFGHATRVVEVVRNLISAGHDV--HVVTGAP--DFVFTSEIQ--SPRLFIRKVLLDCGAVQADALTVDR 88 (838)
Q Consensus 15 ~~~Il~~v~g~G~GHv~r~laLA~~L~~~Gh~V--~~v~~~~--~~~~~~~i~--~~~~~~~~~~~~~g~~~~~~~~~~~ 88 (838)
+.+|++ ++.++.||++|+++||+.|+++||.| +|++... ......... .+++.+... ..|+........+.
T Consensus 7 ~~hvv~-~p~p~~GHi~P~l~la~~L~~rGh~v~vt~~~t~~~~~~~~~~~~~~~~~~i~~~~i--~~glp~~~~~~~~~ 83 (456)
T 2c1x_A 7 NPHVAV-LAFPFSTHAAPLLAVVRRLAAAAPHAVFSFFSTSQSNASIFHDSMHTMQCNIKSYDI--SDGVPEGYVFAGRP 83 (456)
T ss_dssp CCEEEE-ECCCSSSSHHHHHHHHHHHHHHCTTSEEEEEECHHHHHHHC-------CTTEEEEEC--CCCCCTTCCCCCCT
T ss_pred CCEEEE-EcCcccchHHHHHHHHHHHHhCCCCeEEEEEeCchhHHHhhccccccCCCceEEEeC--CCCCCCcccccCCh
Confidence 345544 57889999999999999999998765 6665521 001111010 123444432 11222110000011
Q ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHh--cCCCcEEEECC-CchHHHHHHHhCCcEEEEecCch--h--HHH----H-h-
Q 003222 89 LASLEKYSETAVAPRKSILKDEVEWLN--SIKADLVVSDV-VPVACRAAADAGIRSVCVTNFSW--D--FIY----A-E- 155 (838)
Q Consensus 89 ~~~l~~~~~~~~~~~~~~l~~~~~~L~--~~kPDlVVsD~-~~~~~~aA~~lgIP~V~is~~~~--~--~i~----~-~- 155 (838)
...+..+...........+. ++++ ..+||+||+|. .+++..+|+.+|||.+.+..... . ..+ . .
T Consensus 84 ~~~~~~~~~~~~~~~~~~l~---~l~~~~~~~~d~vI~D~~~~~~~~vA~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~ 160 (456)
T 2c1x_A 84 QEDIELFTRAAPESFRQGMV---MAVAETGRPVSCLVADAFIWFAADMAAEMGVAWLPFWTAGPNSLSTHVYIDEIREKI 160 (456)
T ss_dssp THHHHHHHHHHHHHHHHHHH---HHHHHHTCCCCEEEEETTSTTHHHHHHHHTCEEEEEECSCHHHHHHHHTHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHH---HHHhccCCCceEEEECCchHhHHHHHHHhCCCEEEEeCccHHHHHHHhhhHHHHhcc
Confidence 11111121111001111222 2222 36899999996 67888899999999988854321 0 000 0 0
Q ss_pred --------------hhhhccc-----------------chHHHHHHHHhhccccceEEecCCCCC--------CCCCCce
Q 003222 156 --------------YVMAAGH-----------------HHRSIVWQIAEDYSHCEFLIRLPGYCP--------MPAFRDV 196 (838)
Q Consensus 156 --------------~~~~~~~-----------------~~~~i~~~l~~~y~~~d~ll~~~~~~~--------~p~~~~v 196 (838)
+.+..+. .+..+...+.+....++.++..++... .+.++++
T Consensus 161 ~~~~~~~~~~~~~~~~pg~~~~~~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~ns~~~le~~~~~~~~~~~~~~ 240 (456)
T 2c1x_A 161 GVSGIQGREDELLNFIPGMSKVRFRDLQEGIVFGNLNSLFSRMLHRMGQVLPKATAVFINSFEELDDSLTNDLKSKLKTY 240 (456)
T ss_dssp CSSCCTTCTTCBCTTSTTCTTCBGGGSCTTTSSSCTTSHHHHHHHHHHHHGGGSSCEEESSCGGGCHHHHHHHHHHSSCE
T ss_pred CCcccccccccccccCCCCCcccHHhCchhhcCCCcccHHHHHHHHHHHhhhhCCEEEECChHHHhHHHHHHHHhcCCCE
Confidence 0110000 001111111122233343333222111 1123567
Q ss_pred eecCcccccC-Cc-C--hHHHHHHhCCCCCCcEEEEEcCCCCch-h----hhHHhhCCCCcEEE-EeCCCCC-CC-----
Q 003222 197 IDVPLVVRRL-HK-S--RKEVRKELGIEDDVKLLILNFGGQPAG-W----KLKEEYLPSGWKCL-VCGASDS-QL----- 260 (838)
Q Consensus 197 ~~ip~~~~~~-~~-~--~~~~r~~l~~~~~~~~Vlvs~Gs~~~~-~----~ll~~l~~~~~~~v-v~G~~~~-~l----- 260 (838)
+.+||+.... .. . ..++.++++..+++++|||++||.+.. . ++...+...++.++ ++|.... .+
T Consensus 241 ~~vGpl~~~~~~~~~~~~~~~~~wl~~~~~~~vv~vs~GS~~~~~~~~~~~~~~~l~~~~~~~lw~~~~~~~~~l~~~~~ 320 (456)
T 2c1x_A 241 LNIGPFNLITPPPVVPNTTGCLQWLKERKPTSVVYISFGTVTTPPPAEVVALSEALEASRVPFIWSLRDKARVHLPEGFL 320 (456)
T ss_dssp EECCCHHHHC---------CHHHHHHTSCTTCEEEEECCSSCCCCHHHHHHHHHHHHHHTCCEEEECCGGGGGGSCTTHH
T ss_pred EEecCcccCcccccccchhhHHHHHhcCCCcceEEEecCccccCCHHHHHHHHHHHHhcCCeEEEEECCcchhhCCHHHH
Confidence 8888865421 11 1 124677887766789999999998752 2 23333433345444 4564321 12
Q ss_pred ---CCCeEECCCCCCHHHHHh--hcCEEEecCChhhHHHHHHcCCcEEEEeCCCCCChHHHHHHHHHc-CcEEEEecCCC
Q 003222 261 ---PPNFIKLPKDAYTPDFMA--ASDCMLGKIGYGTVSEALAYKLPFVFVRRDYFNEEPFLRNMLEFY-QGGVEMIRRDL 334 (838)
Q Consensus 261 ---p~nv~~~~~~~~~pdlLa--~adl~It~gG~~Tv~Eal~~GvP~l~iP~~~~~EQ~~Na~~l~~~-G~g~~l~~~~~ 334 (838)
++|+++.+|.+. .++|+ ++|+||||||+||++|++++|||+|++| .+.||+.||+++++. |+|+.+...++
T Consensus 321 ~~~~~~~~v~~w~pq-~~vL~h~~~~~fvth~G~~S~~Eal~~GvP~i~~P--~~~dQ~~Na~~l~~~~g~g~~l~~~~~ 397 (456)
T 2c1x_A 321 EKTRGYGMVVPWAPQ-AEVLAHEAVGAFVTHCGWNSLWESVAGGVPLICRP--FFGDQRLNGRMVEDVLEIGVRIEGGVF 397 (456)
T ss_dssp HHHTTTEEEESCCCH-HHHHTSTTEEEEEECCCHHHHHHHHHHTCCEEECC--CSTTHHHHHHHHHHTSCCEEECGGGSC
T ss_pred hhcCCceEEecCCCH-HHHhcCCcCCEEEecCCcchHHHHHHhCceEEecC--ChhhHHHHHHHHHHHhCeEEEecCCCc
Confidence 468888665432 27888 5899999999999999999999999999 689999999999999 99999987788
Q ss_pred ChhhHHHHHHHHhhCCCCccCCCCHHHHHHHHHHHHh
Q 003222 335 LTGHWKPYLERAISLKPCYEGGINGGEVAAHILQETA 371 (838)
Q Consensus 335 ~~~~l~~~l~~ll~~~~~~~~~~~g~~~~a~~i~~~~ 371 (838)
+.+.+.++|++++++++ .....+.|..+.+.+
T Consensus 398 ~~~~l~~~i~~ll~~~~-----~~~~r~~a~~l~~~~ 429 (456)
T 2c1x_A 398 TKSGLMSCFDQILSQEK-----GKKLRENLRALRETA 429 (456)
T ss_dssp CHHHHHHHHHHHHHSHH-----HHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHCCCc-----HHHHHHHHHHHHHHH
Confidence 99999999999997641 123555566666554
|
| >2pq6_A UDP-glucuronosyl/UDP-glucosyltransferase; glycosylation, isoflavonoid, uridine diphosphate glycosyltransferase; 2.10A {Medicago truncatula} SCOP: c.87.1.10 | Back alignment and structure |
|---|
Probab=99.91 E-value=5.1e-23 Score=237.75 Aligned_cols=346 Identities=10% Similarity=0.049 Sum_probs=201.1
Q ss_pred CceEEEEEeecCCCcccHHHHHHHHHHHHHCCCeEEEEeCCCC-cccccccC------CCceeeeeeccCCCcccccccc
Q 003222 13 SKHLVFAYYVTGHGFGHATRVVEVVRNLISAGHDVHVVTGAPD-FVFTSEIQ------SPRLFIRKVLLDCGAVQADALT 85 (838)
Q Consensus 13 m~~~~Il~~v~g~G~GHv~r~laLA~~L~~~Gh~V~~v~~~~~-~~~~~~i~------~~~~~~~~~~~~~g~~~~~~~~ 85 (838)
|++.+|+++ +.++.||++|++.||++|+++||+|||++.... ........ .+++.+.... .++..... .
T Consensus 6 ~~~~~vl~~-p~p~~GHi~P~l~La~~L~~rG~~VT~v~t~~~~~~~~~~~~~~~~~~~~~i~~~~l~--~~lp~~~~-~ 81 (482)
T 2pq6_A 6 NRKPHVVMI-PYPVQGHINPLFKLAKLLHLRGFHITFVNTEYNHKRLLKSRGPKAFDGFTDFNFESIP--DGLTPMEG-D 81 (482)
T ss_dssp --CCEEEEE-CCSSHHHHHHHHHHHHHHHHTTCEEEEEEEHHHHHHHC------------CEEEEEEC--CCCC------
T ss_pred CCCCEEEEe-cCccchhHHHHHHHHHHHHhCCCeEEEEeCCchhhhhccccccccccCCCceEEEECC--CCCCCccc-c
Confidence 445667554 688999999999999999999999999976421 11111100 0244454431 12211000 0
Q ss_pred cChHHHHHHHHHHhhccHHHHHHHHHHHHh----cCCCcEEEECC-CchHHHHHHHhCCcEEEEecCchh--HHH---H-
Q 003222 86 VDRLASLEKYSETAVAPRKSILKDEVEWLN----SIKADLVVSDV-VPVACRAAADAGIRSVCVTNFSWD--FIY---A- 154 (838)
Q Consensus 86 ~~~~~~l~~~~~~~~~~~~~~l~~~~~~L~----~~kPDlVVsD~-~~~~~~aA~~lgIP~V~is~~~~~--~i~---~- 154 (838)
.+....+..+...+.......+++..+.++ ..+||+||+|. .+|+..+|+.+|||.+.+...... ..+ .
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~~d~vI~D~~~~~~~~vA~~lgiP~v~~~~~~~~~~~~~~~~~~ 161 (482)
T 2pq6_A 82 GDVSQDVPTLCQSVRKNFLKPYCELLTRLNHSTNVPPVTCLVSDCCMSFTIQAAEEFELPNVLYFSSSACSLLNVMHFRS 161 (482)
T ss_dssp ----CCHHHHHHHHTTSSHHHHHHHHHHHHTCSSSCCCCEEEEETTCTHHHHHHHHTTCCEEEEECSCHHHHHHHTTHHH
T ss_pred cCcchhHHHHHHHHHHHhhHHHHHHHHHHhhhccCCCceEEEECCcchhHHHHHHHcCCCEEEEecccHHHHHHHHHHHH
Confidence 000001111222111122234444444444 25899999996 678888999999999988543210 000 0
Q ss_pred ----hhhhh--------------------cc--------cch------HHHHH---HHHhhccccceEEecCCCC-C---
Q 003222 155 ----EYVMA--------------------AG--------HHH------RSIVW---QIAEDYSHCEFLIRLPGYC-P--- 189 (838)
Q Consensus 155 ----~~~~~--------------------~~--------~~~------~~i~~---~l~~~y~~~d~ll~~~~~~-~--- 189 (838)
.+.+. .. ... +.... ...+....++.++..++.. .
T Consensus 162 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~nt~~~le~~~ 241 (482)
T 2pq6_A 162 FVERGIIPFKDESYLTNGCLETKVDWIPGLKNFRLKDIVDFIRTTNPNDIMLEFFIEVADRVNKDTTILLNTFNELESDV 241 (482)
T ss_dssp HHHTTCSSCSSGGGGTSSGGGCBCCSSTTCCSCBGGGSCGGGCCSCTTCHHHHHHHHHHHTCCTTCCEEESSCGGGGHHH
T ss_pred HHhcCCCCCccccccccccccCccccCCCCCCCchHHCchhhccCCcccHHHHHHHHHHHhhccCCEEEEcChHHHhHHH
Confidence 01000 00 000 00000 0111222233333222111 0
Q ss_pred ----CCCCCceeecCccccc--CC-----------c---ChHHHHHHhCCCCCCcEEEEEcCCCCc-h-h---hhHHhhC
Q 003222 190 ----MPAFRDVIDVPLVVRR--LH-----------K---SRKEVRKELGIEDDVKLLILNFGGQPA-G-W---KLKEEYL 244 (838)
Q Consensus 190 ----~p~~~~v~~ip~~~~~--~~-----------~---~~~~~r~~l~~~~~~~~Vlvs~Gs~~~-~-~---~ll~~l~ 244 (838)
.+.+++++.|||+... .. . ...++.+|++..+++++|||++||.+. . . ++...+.
T Consensus 242 ~~~~~~~~~~v~~VGPl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~wld~~~~~~vv~vs~GS~~~~~~~~~~~~~~~l~ 321 (482)
T 2pq6_A 242 INALSSTIPSIYPIGPLPSLLKQTPQIHQLDSLDSNLWKEDTECLDWLESKEPGSVVYVNFGSTTVMTPEQLLEFAWGLA 321 (482)
T ss_dssp HHHHHTTCTTEEECCCHHHHHHTSTTGGGGCC---------CHHHHHHTTSCTTCEEEEECCSSSCCCHHHHHHHHHHHH
T ss_pred HHHHHHhCCcEEEEcCCcccccccccccccccccccccccchHHHHHHhcCCCCceEEEecCCcccCCHHHHHHHHHHHH
Confidence 2233568889886432 11 1 112467888766678999999999875 2 1 2333444
Q ss_pred CCCcEEEE-eCCCC--------CC-----CCCCeEECCCCCCHHHHHhh--cCEEEecCChhhHHHHHHcCCcEEEEeCC
Q 003222 245 PSGWKCLV-CGASD--------SQ-----LPPNFIKLPKDAYTPDFMAA--SDCMLGKIGYGTVSEALAYKLPFVFVRRD 308 (838)
Q Consensus 245 ~~~~~~vv-~G~~~--------~~-----lp~nv~~~~~~~~~pdlLa~--adl~It~gG~~Tv~Eal~~GvP~l~iP~~ 308 (838)
..+..+++ +|... +. .++|+++.+|.+.+ ++|++ +++||||||+||++|++++|||+|++|
T Consensus 322 ~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~~~pq~-~~L~h~~~~~~vth~G~~s~~Eal~~GvP~i~~P-- 398 (482)
T 2pq6_A 322 NCKKSFLWIIRPDLVIGGSVIFSSEFTNEIADRGLIASWCPQD-KVLNHPSIGGFLTHCGWNSTTESICAGVPMLCWP-- 398 (482)
T ss_dssp HTTCEEEEECCGGGSTTTGGGSCHHHHHHHTTTEEEESCCCHH-HHHTSTTEEEEEECCCHHHHHHHHHHTCCEEECC--
T ss_pred hcCCcEEEEEcCCccccccccCcHhHHHhcCCCEEEEeecCHH-HHhcCCCCCEEEecCCcchHHHHHHcCCCEEecC--
Confidence 45565554 45321 11 35788887654432 78966 667999999999999999999999999
Q ss_pred CCCChHHHHHHHH-HcCcEEEEecCCCChhhHHHHHHHHhhCCCCccCCCCHHHHHHHHHHHHh
Q 003222 309 YFNEEPFLRNMLE-FYQGGVEMIRRDLLTGHWKPYLERAISLKPCYEGGINGGEVAAHILQETA 371 (838)
Q Consensus 309 ~~~EQ~~Na~~l~-~~G~g~~l~~~~~~~~~l~~~l~~ll~~~~~~~~~~~g~~~~a~~i~~~~ 371 (838)
.+.||+.||++++ +.|+|+.+. .+++.+.+.++|++++++++ .....+.|..+.+.+
T Consensus 399 ~~~dQ~~na~~~~~~~G~g~~l~-~~~~~~~l~~~i~~ll~~~~-----~~~~r~~a~~l~~~~ 456 (482)
T 2pq6_A 399 FFADQPTDCRFICNEWEIGMEID-TNVKREELAKLINEVIAGDK-----GKKMKQKAMELKKKA 456 (482)
T ss_dssp CSTTHHHHHHHHHHTSCCEEECC-SSCCHHHHHHHHHHHHTSHH-----HHHHHHHHHHHHHHH
T ss_pred cccchHHHHHHHHHHhCEEEEEC-CCCCHHHHHHHHHHHHcCCc-----HHHHHHHHHHHHHHH
Confidence 6799999999997 799999998 67899999999999997651 123555666666654
|
| >3gon_A Phosphomevalonate kinase; GHMP kinase superfamily, ATP-binding, nucleotide- binding, transferase; HET: PMV ANP; 1.90A {Streptococcus pneumoniae} PDB: 1k47_A | Back alignment and structure |
|---|
Probab=99.91 E-value=1e-23 Score=231.76 Aligned_cols=188 Identities=17% Similarity=0.054 Sum_probs=143.7
Q ss_pred eEEEEccccccccccccccC-CCeeeccccccceEEEEEEcCCccchhhhhhhhccCCCCCCCCCeEEEEecccccCCCC
Q 003222 497 IFVARAPGRLDVMGGIADYS-GSLVLQMPIREACHVALQKISPSKQRLWKHALARHNDKGQGPMPVLQIVSYGSELSNRG 575 (838)
Q Consensus 497 ~~~~~APGRv~L~GeH~Dy~-gg~vl~~ai~~~~~v~~~~~~d~~~~l~~~~~~~~~~~~~~~~~~i~i~s~~~~~~~~~ 575 (838)
|+.++|||||.|+|||++.+ |+++|++||++++++.++++++.+ |.+...+
T Consensus 1 mi~v~apGKviL~GEhaVv~~G~~Ala~ai~~~~~v~i~~~~~~~-----------------------i~~~~~~----- 52 (335)
T 3gon_A 1 MIAVKTCGKLYWAGEYAILEPGQLALIKDIPIYMRAEIAFSDSYR-----------------------IYSDMFD----- 52 (335)
T ss_dssp CEEEEEEEEEEEECTTGGGSTTCEEEEEEEEEEEEEEEEECSSCE-----------------------EEETTSS-----
T ss_pred CEEEEECCEEEEEeeeeEEcCCCcEEEEEecceEEEEEEECCCCE-----------------------EEEeCCC-----
Confidence 46789999999999998887 999999999999999999987643 2221111
Q ss_pred CceeccCCccccCCCCcchhhhhcccCCCCCCChhHHHHHHHHHHHHHhCCCCCCCEEEEEEeCCCCC---CCCChHHHH
Q 003222 576 PTFDMDLSDFMDEGKPMSYEKAKKYFDTNPSQKWAAYVAGTILVLMTELGVRFEDSISMLVSSAVPEG---KGVSSSASV 652 (838)
Q Consensus 576 ~~~~~~l~~~~~~~~p~~~~~~~~~~~~~~~~~w~~y~~g~i~~~~~~~g~~~~~g~~i~i~s~iP~g---~GLgSSAA~ 652 (838)
+.+++.. .....-|.++++.+.. ++++.+..+ .|+++.|.|++|.+ +|||||||+
T Consensus 53 --~~~~~~~------------------~~~~~~~~~~i~~~~~-~l~~~~~~~-~~~~i~I~s~lp~~~~~~GLgSSaa~ 110 (335)
T 3gon_A 53 --FAVDLRP------------------NPDYSLIQETIALMGD-FLAVRGQNL-RPFSLAIYGKMEREGKKFGLGSSGSV 110 (335)
T ss_dssp --SCBCSSC------------------CTTTHHHHHHHHHHHH-HHHHTTCCC-CCEEEEEECCSEETTEECSSCHHHHH
T ss_pred --cccccCc------------------CCCcHHHHHHHHHHHH-HHHHcCCCC-CceEEEEEecCCcccCCCCcchHHHH
Confidence 1111110 0011123455555433 455777776 79999999999987 699999999
Q ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHhhhcCCCCChhhHHHhhcCCCCeEEEEEecCC-------------------
Q 003222 653 EVASMSAIAAAHGLNIHPRDLALLCQKVENHIVGAPCGVMDQMASACGEANKLLAMVCQPA------------------- 713 (838)
Q Consensus 653 ~va~~~al~~l~~~~l~~~ela~~a~~~E~~~~G~~~G~mDq~a~~~G~~~~~l~~d~~~~------------------- 713 (838)
+||++.|++.++++.+++.+++++|+.+|+.++|.+|| |||+++++||. +++...+.
T Consensus 111 ~va~~~al~~~~~~~~~~~~l~~la~~~E~~~~g~~sg-~D~a~a~~Gg~---i~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (335)
T 3gon_A 111 VVLVVKALLALYNLSVDQNLLFKLTSAVLLKRGDNGSM-GDLACIAAEDL---VLYQSFDRQKVAAWLEEENLATVLERD 186 (335)
T ss_dssp HHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTTCCSCS-HHHHHHHHTSC---EEEECCCHHHHHHHHHHSCHHHHHHSC
T ss_pred HHHHHHhhhhcccccchHHHHHHHHHHHHHHhcCCCCC-CCcceeecCCe---EEEEeCCccccceeecccchhheeccc
Confidence 99999999999999999999999999999999999999 99999999996 33332111
Q ss_pred --ceeeeeccCCCeEEEEEeCCCCCcC
Q 003222 714 --ELLGVVEIPSHIRFWGIDSGIRHSV 738 (838)
Q Consensus 714 --~~~~~v~~~~~~~~vi~~s~~~~~~ 738 (838)
....+++.+..+.+++++|+.++++
T Consensus 187 ~~~~~~~~~~~~~~~l~~~~~~~~~~t 213 (335)
T 3gon_A 187 WGFSISQVKPTLECDFLVGWTKEVAVS 213 (335)
T ss_dssp CCCEEEECCCCSCCEEEEEECCCCCCH
T ss_pred ccceeEEcCCccccceEEeecCChhhH
Confidence 1124556667889999999999865
|
| >2iyf_A OLED, oleandomycin glycosyltransferase; antibiotic resistance, glycosylation, enzyme, macrolide, carbohydrate; HET: ERY UDP; 1.7A {Streptomyces antibioticus} | Back alignment and structure |
|---|
Probab=99.91 E-value=5.5e-23 Score=233.39 Aligned_cols=343 Identities=15% Similarity=0.093 Sum_probs=200.8
Q ss_pred CceEEEEEeecCCCcccHHHHHHHHHHHHHCCCeEEEEeCCCCcccccccCCCceeeeeeccC--CCcccccccccChHH
Q 003222 13 SKHLVFAYYVTGHGFGHATRVVEVVRNLISAGHDVHVVTGAPDFVFTSEIQSPRLFIRKVLLD--CGAVQADALTVDRLA 90 (838)
Q Consensus 13 m~~~~Il~~v~g~G~GHv~r~laLA~~L~~~Gh~V~~v~~~~~~~~~~~i~~~~~~~~~~~~~--~g~~~~~~~~~~~~~ 90 (838)
|..++|+++ ++.+.||+.++++||++|+++||+|+|++.... ...+...++.+...... .+.........+...
T Consensus 5 m~m~kIl~~-~~~~~Gh~~p~~~la~~L~~~G~~V~~~~~~~~---~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (430)
T 2iyf_A 5 TTPAHIAMF-SIAAHGHVNPSLEVIRELVARGHRVTYAIPPVF---ADKVAATGPRPVLYHSTLPGPDADPEAWGSTLLD 80 (430)
T ss_dssp ---CEEEEE-CCSCHHHHGGGHHHHHHHHHTTCEEEEEECGGG---HHHHHTTSCEEEECCCCSCCTTSCGGGGCSSHHH
T ss_pred cccceEEEE-eCCCCccccchHHHHHHHHHCCCeEEEEeCHHH---HHHHHhCCCEEEEcCCcCccccccccccchhhHH
Confidence 555678775 677899999999999999999999999987531 11121123333332111 111100000111111
Q ss_pred HHHHHHHHhhccHHHHHHHHHHHHhcCCCcEEEECC-CchHHHHHHHhCCcEEEEecCc--hhHHHH----hhh------
Q 003222 91 SLEKYSETAVAPRKSILKDEVEWLNSIKADLVVSDV-VPVACRAAADAGIRSVCVTNFS--WDFIYA----EYV------ 157 (838)
Q Consensus 91 ~l~~~~~~~~~~~~~~l~~~~~~L~~~kPDlVVsD~-~~~~~~aA~~lgIP~V~is~~~--~~~i~~----~~~------ 157 (838)
.+..+.. ..........+++++++||+||+|+ .+++..+|+.+|||.+.+.... |..... .+.
T Consensus 81 ~~~~~~~----~~~~~~~~l~~~l~~~~pD~Vi~d~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (430)
T 2iyf_A 81 NVEPFLN----DAIQALPQLADAYADDIPDLVLHDITSYPARVLARRWGVPAVSLSPNLVAWKGYEEEVAEPMWREPRQT 156 (430)
T ss_dssp HHHHHHH----HHHHHHHHHHHHHTTSCCSEEEEETTCHHHHHHHHHHTCCEEEEESSCCCCTTHHHHTHHHHHHHHHHS
T ss_pred HHHHHHH----HHHHHHHHHHHHhhccCCCEEEECCccHHHHHHHHHcCCCEEEEecccccccccccccccchhhhhccc
Confidence 1111111 1123445567788999999999996 4678889999999998875322 210000 000
Q ss_pred hhcccchHHHHHHHHhhc----------cccceEEecC-CCCCC--CCC-Cc-eeecCcccccCCcChHHHHHHhCCCCC
Q 003222 158 MAAGHHHRSIVWQIAEDY----------SHCEFLIRLP-GYCPM--PAF-RD-VIDVPLVVRRLHKSRKEVRKELGIEDD 222 (838)
Q Consensus 158 ~~~~~~~~~i~~~l~~~y----------~~~d~ll~~~-~~~~~--p~~-~~-v~~ip~~~~~~~~~~~~~r~~l~~~~~ 222 (838)
+.. ..+....+.+...+ ..++.++... ..... ..+ ++ ++.+|+.... +.+..++....++
T Consensus 157 ~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~~vG~~~~~----~~~~~~~~~~~~~ 231 (430)
T 2iyf_A 157 ERG-RAYYARFEAWLKENGITEHPDTFASHPPRSLVLIPKALQPHADRVDEDVYTFVGACQGD----RAEEGGWQRPAGA 231 (430)
T ss_dssp HHH-HHHHHHHHHHHHHTTCCSCHHHHHHCCSSEEECSCGGGSTTGGGSCTTTEEECCCCC---------CCCCCCCTTC
T ss_pred hHH-HHHHHHHHHHHHHhCCCCCHHHHhcCCCcEEEeCcHHhCCCcccCCCccEEEeCCcCCC----CCCCCCCccccCC
Confidence 000 00000011111111 1233333221 11110 011 23 5666642211 0000112211346
Q ss_pred CcEEEEEcCCCCch-hh----hHHhhCC-CCcEE-EEeCCCCC-----CCCCCeEECCCCCCHHHHHhhcCEEEecCChh
Q 003222 223 VKLLILNFGGQPAG-WK----LKEEYLP-SGWKC-LVCGASDS-----QLPPNFIKLPKDAYTPDFMAASDCMLGKIGYG 290 (838)
Q Consensus 223 ~~~Vlvs~Gs~~~~-~~----ll~~l~~-~~~~~-vv~G~~~~-----~lp~nv~~~~~~~~~pdlLa~adl~It~gG~~ 290 (838)
+++||+++|+.... .+ +++.+.. +++.+ +++|.... .+++||++.+|.+.+ ++|++||+||+|+|++
T Consensus 232 ~~~v~v~~Gs~~~~~~~~~~~~~~~l~~~~~~~~~~~~G~~~~~~~l~~~~~~v~~~~~~~~~-~~l~~ad~~v~~~G~~ 310 (430)
T 2iyf_A 232 EKVVLVSLGSAFTKQPAFYRECVRAFGNLPGWHLVLQIGRKVTPAELGELPDNVEVHDWVPQL-AILRQADLFVTHAGAG 310 (430)
T ss_dssp SEEEEEECTTTCC-CHHHHHHHHHHHTTCTTEEEEEECC---CGGGGCSCCTTEEEESSCCHH-HHHTTCSEEEECCCHH
T ss_pred CCeEEEEcCCCCCCcHHHHHHHHHHHhcCCCeEEEEEeCCCCChHHhccCCCCeEEEecCCHH-HHhhccCEEEECCCcc
Confidence 78999999998731 22 3334434 36766 46676432 257899998887765 8999999999999999
Q ss_pred hHHHHHHcCCcEEEEeCCCCCChHHHHHHHHHcCcEEEEecCCCChhhHHHHHHHHhhCCCCcc---------CCCCHHH
Q 003222 291 TVSEALAYKLPFVFVRRDYFNEEPFLRNMLEFYQGGVEMIRRDLLTGHWKPYLERAISLKPCYE---------GGINGGE 361 (838)
Q Consensus 291 Tv~Eal~~GvP~l~iP~~~~~EQ~~Na~~l~~~G~g~~l~~~~~~~~~l~~~l~~ll~~~~~~~---------~~~~g~~ 361 (838)
|++||+++|+|+|++| ...||..|++.+++.|+|+.+...+++++.+.++|.++++++.... ....+.+
T Consensus 311 t~~Ea~~~G~P~i~~p--~~~~q~~~a~~~~~~g~g~~~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~~~~~~~~~~~~ 388 (430)
T 2iyf_A 311 GSQEGLATATPMIAVP--QAVDQFGNADMLQGLGVARKLATEEATADLLRETALALVDDPEVARRLRRIQAEMAQEGGTR 388 (430)
T ss_dssp HHHHHHHTTCCEEECC--CSHHHHHHHHHHHHTTSEEECCCC-CCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHCHHH
T ss_pred HHHHHHHhCCCEEECC--CccchHHHHHHHHHcCCEEEcCCCCCCHHHHHHHHHHHHcCHHHHHHHHHHHHHHHhcCcHH
Confidence 9999999999999999 4679999999999999999998877788999999999998653211 1245777
Q ss_pred HHHHHHHHHh
Q 003222 362 VAAHILQETA 371 (838)
Q Consensus 362 ~~a~~i~~~~ 371 (838)
++++.|++++
T Consensus 389 ~~~~~i~~~~ 398 (430)
T 2iyf_A 389 RAADLIEAEL 398 (430)
T ss_dssp HHHHHHHTTS
T ss_pred HHHHHHHHHh
Confidence 7777777664
|
| >2p6p_A Glycosyl transferase; X-RAY-diffraction,urdamycina-biosynthesis; 1.88A {Streptomyces fradiae} | Back alignment and structure |
|---|
Probab=99.91 E-value=1.8e-23 Score=233.70 Aligned_cols=335 Identities=11% Similarity=0.022 Sum_probs=199.2
Q ss_pred EEEEEeecCCCcccHHHHHHHHHHHHHCCCeEEEEeCCCCcccccccCCCceeeeeeccCC--Ccccc------cccccC
Q 003222 16 LVFAYYVTGHGFGHATRVVEVVRNLISAGHDVHVVTGAPDFVFTSEIQSPRLFIRKVLLDC--GAVQA------DALTVD 87 (838)
Q Consensus 16 ~~Il~~v~g~G~GHv~r~laLA~~L~~~Gh~V~~v~~~~~~~~~~~i~~~~~~~~~~~~~~--g~~~~------~~~~~~ 87 (838)
|+|+++ ++.+.||+.++++||++|+++||+|+|++... +...+...++.+....... +.... ......
T Consensus 1 MrIl~~-~~~~~Gh~~p~~~la~~L~~~Gh~V~~~~~~~---~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (384)
T 2p6p_A 1 MRILFV-AAGSPATVFALAPLATAARNAGHQVVMAANQD---MGPVVTGVGLPAVATTDLPIRHFITTDREGRPEAIPSD 76 (384)
T ss_dssp CEEEEE-CCSSHHHHHHHHHHHHHHHHTTCEEEEEECGG---GHHHHHHTTCCEEESCSSCHHHHHHBCTTSCBCCCCCS
T ss_pred CEEEEE-eCCccchHhHHHHHHHHHHHCCCEEEEEeCHH---HHHHHHhCCCEEEEeCCcchHHHHhhhcccCccccCcc
Confidence 367665 56778999999999999999999999998643 1111111122232211111 00000 000000
Q ss_pred hHHHHHHH-HHHhhccHHHHHHHHHHHHhcCCCcEEEECC-CchHHHHHHHhCCcEEEEecC-chhHHHHhhhhhcccch
Q 003222 88 RLASLEKY-SETAVAPRKSILKDEVEWLNSIKADLVVSDV-VPVACRAAADAGIRSVCVTNF-SWDFIYAEYVMAAGHHH 164 (838)
Q Consensus 88 ~~~~l~~~-~~~~~~~~~~~l~~~~~~L~~~kPDlVVsD~-~~~~~~aA~~lgIP~V~is~~-~~~~i~~~~~~~~~~~~ 164 (838)
. .....+ ..++.......+.+..+.+++++||+||+|. .+++..+|+.+|||++.+... .+...+....
T Consensus 77 ~-~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~pD~Vi~~~~~~~~~~~a~~~giP~v~~~~~~~~~~~~~~~~------- 148 (384)
T 2p6p_A 77 P-VAQARFTGRWFARMAASSLPRMLDFSRAWRPDLIVGGTMSYVAPLLALHLGVPHARQTWDAVDADGIHPGA------- 148 (384)
T ss_dssp H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCSEEEEETTCTHHHHHHHHHTCCEEEECCSSCCCTTTHHHH-------
T ss_pred h-HHHHHHHHHHHHhhHHHHHHHHHHHHhccCCcEEEECcchhhHHHHHHhcCCCEEEeccCCcccchhhHHH-------
Confidence 0 111111 1111001122345567778889999999996 667788899999999887421 1100000000
Q ss_pred HHHHHHHHhhccc-----cceEEe-cCCCCCCC-CCC--ceeecCcccccCCcChHHHHHHhCCCCCCcEEEEEcCCCCc
Q 003222 165 RSIVWQIAEDYSH-----CEFLIR-LPGYCPMP-AFR--DVIDVPLVVRRLHKSRKEVRKELGIEDDVKLLILNFGGQPA 235 (838)
Q Consensus 165 ~~i~~~l~~~y~~-----~d~ll~-~~~~~~~p-~~~--~v~~ip~~~~~~~~~~~~~r~~l~~~~~~~~Vlvs~Gs~~~ 235 (838)
....+++...+.. ++..+. .+.....+ ..+ .+..+|.. .+ .+..+++...+++++||+++||.+.
T Consensus 149 ~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~----~~~~~~l~~~~~~~~v~v~~Gs~~~ 222 (384)
T 2p6p_A 149 DAELRPELSELGLERLPAPDLFIDICPPSLRPANAAPARMMRHVATS--RQ----CPLEPWMYTRDTRQRVLVTSGSRVA 222 (384)
T ss_dssp HHHTHHHHHHTTCSSCCCCSEEEECSCGGGSCTTSCCCEECCCCCCC--CC----CBCCHHHHCCCSSCEEEEECSSSSS
T ss_pred HHHHHHHHHHcCCCCCCCCCeEEEECCHHHCCCCCCCCCceEecCCC--CC----CCCCchhhcCCCCCEEEEECCCCCc
Confidence 0011112222211 222222 11111100 001 11122211 01 1122333333467899999999874
Q ss_pred h----------hhhHHhhCCCCcEEEE-eCCCCC----CCCCCeEECCCCCCHHHHHhhcCEEEecCChhhHHHHHHcCC
Q 003222 236 G----------WKLKEEYLPSGWKCLV-CGASDS----QLPPNFIKLPKDAYTPDFMAASDCMLGKIGYGTVSEALAYKL 300 (838)
Q Consensus 236 ~----------~~ll~~l~~~~~~~vv-~G~~~~----~lp~nv~~~~~~~~~pdlLa~adl~It~gG~~Tv~Eal~~Gv 300 (838)
. ..+++++...++.+++ +|.... .+++||.+ +|.+ +.++|++||+||||||++|++||+++|+
T Consensus 223 ~~~~~~~~~~~~~~~~al~~~~~~~~~~~g~~~~~~l~~~~~~v~~-~~~~-~~~~l~~~d~~v~~~G~~t~~Ea~~~G~ 300 (384)
T 2p6p_A 223 KESYDRNFDFLRGLAKDLVRWDVELIVAAPDTVAEALRAEVPQARV-GWTP-LDVVAPTCDLLVHHAGGVSTLTGLSAGV 300 (384)
T ss_dssp CCSSCCCCTTHHHHHHHHHTTTCEEEEECCHHHHHHHHHHCTTSEE-ECCC-HHHHGGGCSEEEECSCTTHHHHHHHTTC
T ss_pred cccccccHHHHHHHHHHHhcCCcEEEEEeCCCCHHhhCCCCCceEE-cCCC-HHHHHhhCCEEEeCCcHHHHHHHHHhCC
Confidence 2 1233444445676665 453211 15789999 9874 6799999999999999999999999999
Q ss_pred cEEEEeCCCCCChHHHHHHHHHcCcEEEEecCCCChhhHHHHHHHHhhCCCCcc---------CCCCHHHHHHHHHHHHh
Q 003222 301 PFVFVRRDYFNEEPFLRNMLEFYQGGVEMIRRDLLTGHWKPYLERAISLKPCYE---------GGINGGEVAAHILQETA 371 (838)
Q Consensus 301 P~l~iP~~~~~EQ~~Na~~l~~~G~g~~l~~~~~~~~~l~~~l~~ll~~~~~~~---------~~~~g~~~~a~~i~~~~ 371 (838)
|+|++| .+.||..|++++++.|+|+.+...+++++.+.++|.++++++.... ...+|+++++.+|..++
T Consensus 301 P~v~~p--~~~dq~~~a~~~~~~g~g~~~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 378 (384)
T 2p6p_A 301 PQLLIP--KGSVLEAPARRVADYGAAIALLPGEDSTEAIADSCQELQAKDTYARRAQDLSREISGMPLPATVVTALEQLA 378 (384)
T ss_dssp CEEECC--CSHHHHHHHHHHHHHTSEEECCTTCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHH
T ss_pred CEEEcc--CcccchHHHHHHHHCCCeEecCcCCCCHHHHHHHHHHHHcCHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHh
Confidence 999999 5789999999999999999998877888999999999998753211 35668888888888775
Q ss_pred c
Q 003222 372 I 372 (838)
Q Consensus 372 ~ 372 (838)
.
T Consensus 379 ~ 379 (384)
T 2p6p_A 379 H 379 (384)
T ss_dssp H
T ss_pred h
Confidence 3
|
| >2x7i_A Mevalonate kinase; transferase; HET: CIT; 2.20A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.91 E-value=5.1e-24 Score=231.71 Aligned_cols=183 Identities=17% Similarity=0.222 Sum_probs=143.2
Q ss_pred ceEEEEccccccccccccccCCCeeeccccccc-eEEEEEEcCCccchhhhhhhhccCCCCCCCCCeEEEEecccccCCC
Q 003222 496 EIFVARAPGRLDVMGGIADYSGSLVLQMPIREA-CHVALQKISPSKQRLWKHALARHNDKGQGPMPVLQIVSYGSELSNR 574 (838)
Q Consensus 496 ~~~~~~APGRv~L~GeH~Dy~gg~vl~~ai~~~-~~v~~~~~~d~~~~l~~~~~~~~~~~~~~~~~~i~i~s~~~~~~~~ 574 (838)
+...++|||||||+|||+||+|+.+++++|++. +++.+++++++. .+++.+.+
T Consensus 5 ~~~~~~APgkinL~Ge~~d~~g~~~l~~ai~~~~~~v~v~~~~~~~--------------------~i~~~~~~------ 58 (308)
T 2x7i_A 5 RKGYGESTGKIILIGEHAVTFGEPAIAVPFNAGKIKVLIEALESGN--------------------YSSIKSDV------ 58 (308)
T ss_dssp CEEEEEEEEEEEEEEBTTCCTTSCEEEEEEEEEEEEEEEEECCTTC--------------------CCEEEEEE------
T ss_pred cceEEEEeeEEEEEecCeeecCCeEEEEEEcCCEEEEEEEECCCCC--------------------eeEEEecC------
Confidence 456789999999999999999999999999985 889998876532 02232210
Q ss_pred CCceeccCCccccCCCCcchhhhhcccCCCCCCChhHHHHHHHHHHHHHhCCCCCCCEEEEEEeCCCCCCCCChHHHHHH
Q 003222 575 GPTFDMDLSDFMDEGKPMSYEKAKKYFDTNPSQKWAAYVAGTILVLMTELGVRFEDSISMLVSSAVPEGKGVSSSASVEV 654 (838)
Q Consensus 575 ~~~~~~~l~~~~~~~~p~~~~~~~~~~~~~~~~~w~~y~~g~i~~~~~~~g~~~~~g~~i~i~s~iP~g~GLgSSAA~~v 654 (838)
++.++. ...+|.||+++++..+.+ .. .|++|.+.++||.|+|||||||+++
T Consensus 59 ---~~~~~~---------------------~~~~~~~~v~~~~~~~~~----~~-~g~~i~i~~~iP~g~GLGSSsa~~~ 109 (308)
T 2x7i_A 59 ---YDGMLY---------------------DAPDHLKSLVNRFVELNN----IT-EPLAVTIQTNLPPSRGLGSSAAVAV 109 (308)
T ss_dssp ---CSSCCC---------------------CTTSCHHHHHHHHHHHTT----CC-SCEEEEEEECCCTTSSSCHHHHHHH
T ss_pred ---CCCChh---------------------hhhHHHHHHHHHHHHHHh----hC-CCeEEEEeccCCCCCCccHHHHHHH
Confidence 000111 113689999998776542 13 4999999999999999999999999
Q ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHHHhhhcCCCCChhhHHHhhcCCCCeEEEEEecCCceeeeeccCCCeEEEEEeCCC
Q 003222 655 ASMSAIAAAHGLNIHPRDLALLCQKVENHIVGAPCGVMDQMASACGEANKLLAMVCQPAELLGVVEIPSHIRFWGIDSGI 734 (838)
Q Consensus 655 a~~~al~~l~~~~l~~~ela~~a~~~E~~~~G~~~G~mDq~a~~~G~~~~~l~~d~~~~~~~~~v~~~~~~~~vi~~s~~ 734 (838)
|++.|++.++|.++++++++++|+++|+.++|.|||+ |+.++.+||. ++++ +. ...++++++.++.++|+++++
T Consensus 110 a~~~al~~l~~~~l~~~~l~~la~~~E~~~~g~~sG~-d~~~~~~g~~---~~~~-~g-~~~~~~~~~~~~~~vi~~~~~ 183 (308)
T 2x7i_A 110 AFVRASYDFLGKSLTKEELIEKANWAEQIAHGKPSGI-DTQTIVSGKP---VWFQ-KG-HAETLKTLSLDGYMVVIDTGV 183 (308)
T ss_dssp HHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHSSCCHH-HHHHHHHTSC---EEEE-TT-EEEECSCCCBSSEEEEEECCC
T ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHHHHHHCCCCchH-HHHHhhCCce---EEEE-cC-CCceEeccCCCceEEEEECcC
Confidence 9999999999999999999999999999999999995 9999999884 5555 32 223566666678899999999
Q ss_pred CCcCC
Q 003222 735 RHSVG 739 (838)
Q Consensus 735 ~~~~~ 739 (838)
++++.
T Consensus 184 ~~sT~ 188 (308)
T 2x7i_A 184 KGSTR 188 (308)
T ss_dssp --CCS
T ss_pred CCCHH
Confidence 87753
|
| >4hac_A Mevalonate kinase; GHMP, ATP binding, phosphorylation, transferase; 1.92A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.90 E-value=4.9e-23 Score=225.07 Aligned_cols=182 Identities=20% Similarity=0.277 Sum_probs=140.3
Q ss_pred cCCCCCceEEEEccccccccccccccCCCeeeccccccceEEEEEEcCCccchhhhhhhhccCCCCCCCCCeEEEEeccc
Q 003222 490 LFNWEEEIFVARAPGRLDVMGGIADYSGSLVLQMPIREACHVALQKISPSKQRLWKHALARHNDKGQGPMPVLQIVSYGS 569 (838)
Q Consensus 490 ~f~~~~~~~~~~APGRv~L~GeH~Dy~gg~vl~~ai~~~~~v~~~~~~d~~~~l~~~~~~~~~~~~~~~~~~i~i~s~~~ 569 (838)
+-...++++.++|||||||+|||+||+||.+|++||++++++.++++++ + +|.+.+
T Consensus 14 ~~~~~~~mi~~~APgkinL~GeH~~~~Gg~~l~~aI~~~~~v~v~~~~~--i---------------------~i~~~~- 69 (321)
T 4hac_A 14 LVPRGSHMVSCSAPGKIYLFGEHAVVYGETAIACAVELRTRVRAELNDS--I---------------------TIQSQI- 69 (321)
T ss_dssp CCCCSCCCEEEEEEEEEEEECTTTGGGTCCEEEEEEEEEEEEEEEECSS--E---------------------EEEETT-
T ss_pred CcCCCCCEEEEEeeEEEEEEccCEEEcCCEEEEEEeccCEEEEEEECCC--E---------------------EEEECC-
Confidence 3334467789999999999999999999999999999999999987532 2 333210
Q ss_pred ccCCCCCceeccCCccccCCCCcchhhhhcccCCCCCCChhHHHHHHHHHHHHHhCCCCCCCEEEEEEeCCCCCCCCChH
Q 003222 570 ELSNRGPTFDMDLSDFMDEGKPMSYEKAKKYFDTNPSQKWAAYVAGTILVLMTELGVRFEDSISMLVSSAVPEGKGVSSS 649 (838)
Q Consensus 570 ~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~~~~~~w~~y~~g~i~~~~~~~g~~~~~g~~i~i~s~iP~g~GLgSS 649 (838)
+ .+. ++. ....|.+|+..+ +++.+. ..|+++.+.++||.|+|||||
T Consensus 70 --------~---~~~-------~~~----------~~~~~~~~~~~~----l~~~~~--~~g~~i~i~~~iP~g~GLGSS 115 (321)
T 4hac_A 70 --------G---RTG-------LDF----------EKHPYVSAVIEK----MRKSIP--INGVFLTVDSDIPVGSGLGSS 115 (321)
T ss_dssp --------E---EES-------SCT----------TTSHHHHHHHHH----HTTTSC--CCCEEEEEEECCCSCTTCCHH
T ss_pred --------C---Ccc-------ccc----------chhHHHHHHHHH----HHHhCC--CCCEEEEEECCCCCCCCccHH
Confidence 0 000 000 112455554443 334452 369999999999999999999
Q ss_pred HHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhhhcCCCCChhhHHHhhcCCCCeEEEEEecCCceeeeeccCCCeEEEE
Q 003222 650 ASVEVASMSAIAAAHGLNIHPRDLALLCQKVENHIVGAPCGVMDQMASACGEANKLLAMVCQPAELLGVVEIPSHIRFWG 729 (838)
Q Consensus 650 AA~~va~~~al~~l~~~~l~~~ela~~a~~~E~~~~G~~~G~mDq~a~~~G~~~~~l~~d~~~~~~~~~v~~~~~~~~vi 729 (838)
||+++|++.|++.++|.++++++++++|+++|+.++|.++ .+||+++++||. +++ ... +.+++| ++.++|
T Consensus 116 sa~~va~~~al~~l~~~~l~~~~l~~la~~~e~~~~g~~~-~~D~~~~~~Gg~---~~~--~~~---~~l~~p-~~~~vl 185 (321)
T 4hac_A 116 AAVTIASIGALNELFGFGLSLQEIAKLGHEIEIKVQGAAS-PTDTYVSTFGGV---VTI--PER---RKLKTP-DCGIVI 185 (321)
T ss_dssp HHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHSCCC-SHHHHHHHHCSE---EEE--TTC---CEECCC-CCEEEE
T ss_pred HHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCCc-HHHHHHHHcCCe---EEE--cCC---ceeccC-CCEEEE
Confidence 9999999999999999999999999999999999999955 589999999993 444 222 234466 789999
Q ss_pred EeCCCCCcCC
Q 003222 730 IDSGIRHSVG 739 (838)
Q Consensus 730 ~~s~~~~~~~ 739 (838)
+++++++++.
T Consensus 186 v~p~~~~sT~ 195 (321)
T 4hac_A 186 GDTGVFSSTK 195 (321)
T ss_dssp EECCCCCCHH
T ss_pred EECCCCccHH
Confidence 9999998763
|
| >3otg_A CALG1; calicheamicin, TDP, structural genomics, PSI-2, protein STRU initiative, center for eukaryotic structural genomics, CESG fold; HET: TYD; 2.08A {Micromonospora echinospora} PDB: 3oth_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=4.4e-23 Score=232.41 Aligned_cols=343 Identities=15% Similarity=0.129 Sum_probs=200.8
Q ss_pred ceEEEEEeecCCCcccHHHHHHHHHHHHHCCCeEEEEeCCCCcccccccCCCceeeeeecc--CCCcc-------cccc-
Q 003222 14 KHLVFAYYVTGHGFGHATRVVEVVRNLISAGHDVHVVTGAPDFVFTSEIQSPRLFIRKVLL--DCGAV-------QADA- 83 (838)
Q Consensus 14 ~~~~Il~~v~g~G~GHv~r~laLA~~L~~~Gh~V~~v~~~~~~~~~~~i~~~~~~~~~~~~--~~g~~-------~~~~- 83 (838)
.+|+|+|+. +.+.||+.++++||++|+++||+|+|++... +...+...++.+..... ..++. ....
T Consensus 19 ~~MrIl~~~-~~~~Gh~~~~~~la~~L~~~GheV~v~~~~~---~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (412)
T 3otg_A 19 RHMRVLFAS-LGTHGHTYPLLPLATAARAAGHEVTFATGEG---FAGTLRKLGFEPVATGMPVFDGFLAALRIRFDTDSP 94 (412)
T ss_dssp CSCEEEEEC-CSSHHHHGGGHHHHHHHHHTTCEEEEEECGG---GHHHHHHTTCEEEECCCCHHHHHHHHHHHHHSCSCC
T ss_pred ceeEEEEEc-CCCcccHHHHHHHHHHHHHCCCEEEEEccHH---HHHHHHhcCCceeecCcccccchhhhhhhhhcccCC
Confidence 347887654 6688999999999999999999999998742 12222112333333210 00000 0000
Q ss_pred cccChHHHHHHHHHHhhcc-HHHHHHHHHHHHhcCCCcEEEECC-CchHHHHHHHhCCcEEEEec-Cc-hhHHHHhhhhh
Q 003222 84 LTVDRLASLEKYSETAVAP-RKSILKDEVEWLNSIKADLVVSDV-VPVACRAAADAGIRSVCVTN-FS-WDFIYAEYVMA 159 (838)
Q Consensus 84 ~~~~~~~~l~~~~~~~~~~-~~~~l~~~~~~L~~~kPDlVVsD~-~~~~~~aA~~lgIP~V~is~-~~-~~~i~~~~~~~ 159 (838)
........+..+...+... ....+.+..+++++++||+||+|. .+.+..+|+.++||+|.+.. +. |.......
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~pDvVv~~~~~~~~~~aa~~~giP~v~~~~~~~~~~~~~~~~--- 171 (412)
T 3otg_A 95 EGLTPEQLSELPQIVFGRVIPQRVFDELQPVIERLRPDLVVQEISNYGAGLAALKAGIPTICHGVGRDTPDDLTRSI--- 171 (412)
T ss_dssp TTCCHHHHTTSHHHHHHTHHHHHHHHHHHHHHHHHCCSEEEEETTCHHHHHHHHHHTCCEEEECCSCCCCSHHHHHH---
T ss_pred ccCChhHhhHHHHHHHhccchHHHHHHHHHHHHhcCCCEEEECchhhHHHHHHHHcCCCEEEecccccCchhhhHHH---
Confidence 0000111111111111101 112345567788999999999996 56677888999999988632 11 21111110
Q ss_pred cccchHHHHHHHHhhc----------cccceEEe-cCCCCCCCC-CCceeecCcccccCCcChHHHHHH-hCCCCCCcEE
Q 003222 160 AGHHHRSIVWQIAEDY----------SHCEFLIR-LPGYCPMPA-FRDVIDVPLVVRRLHKSRKEVRKE-LGIEDDVKLL 226 (838)
Q Consensus 160 ~~~~~~~i~~~l~~~y----------~~~d~ll~-~~~~~~~p~-~~~v~~ip~~~~~~~~~~~~~r~~-l~~~~~~~~V 226 (838)
...+ ......+ ..++..+. .+.....+. .....+.|...... ..+.+.+++ ...++++++|
T Consensus 172 ----~~~~-~~~~~~~g~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~v 245 (412)
T 3otg_A 172 ----EEEV-RGLAQRLGLDLPPGRIDGFGNPFIDIFPPSLQEPEFRARPRRHELRPVPF-AEQGDLPAWLSSRDTARPLV 245 (412)
T ss_dssp ----HHHH-HHHHHHTTCCCCSSCCGGGGCCEEECSCGGGSCHHHHTCTTEEECCCCCC-CCCCCCCGGGGGSCTTSCEE
T ss_pred ----HHHH-HHHHHHcCCCCCcccccCCCCeEEeeCCHHhcCCcccCCCCcceeeccCC-CCCCCCCCccccccCCCCEE
Confidence 0111 1111111 12232332 111111000 00011111111111 011112222 1234578899
Q ss_pred EEEcCCCCch-hh----hHHhhCCCCcEEE-EeCCCC-C----CCCCCeEECCCCCCHHHHHhhcCEEEecCChhhHHHH
Q 003222 227 ILNFGGQPAG-WK----LKEEYLPSGWKCL-VCGASD-S----QLPPNFIKLPKDAYTPDFMAASDCMLGKIGYGTVSEA 295 (838)
Q Consensus 227 lvs~Gs~~~~-~~----ll~~l~~~~~~~v-v~G~~~-~----~lp~nv~~~~~~~~~pdlLa~adl~It~gG~~Tv~Ea 295 (838)
++++|+.... .+ +++.+...++.++ ++|... . .+++||++.+|. .++++|++||+||+++|++|++||
T Consensus 246 lv~~G~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~~~~~l~~~~~~v~~~~~~-~~~~~l~~ad~~v~~~g~~t~~Ea 324 (412)
T 3otg_A 246 YLTLGTSSGGTVEVLRAAIDGLAGLDADVLVASGPSLDVSGLGEVPANVRLESWV-PQAALLPHVDLVVHHGGSGTTLGA 324 (412)
T ss_dssp EEECTTTTCSCHHHHHHHHHHHHTSSSEEEEECCSSCCCTTCCCCCTTEEEESCC-CHHHHGGGCSEEEESCCHHHHHHH
T ss_pred EEEcCCCCcCcHHHHHHHHHHHHcCCCEEEEEECCCCChhhhccCCCcEEEeCCC-CHHHHHhcCcEEEECCchHHHHHH
Confidence 9999998532 22 2333433456555 445433 1 257899999998 688999999999999999999999
Q ss_pred HHcCCcEEEEeCCCCCChHHHHHHHHHcCcEEEEecCCCChhhHHHHHHHHhhCCCCcc---------CCCCHHHHHHHH
Q 003222 296 LAYKLPFVFVRRDYFNEEPFLRNMLEFYQGGVEMIRRDLLTGHWKPYLERAISLKPCYE---------GGINGGEVAAHI 366 (838)
Q Consensus 296 l~~GvP~l~iP~~~~~EQ~~Na~~l~~~G~g~~l~~~~~~~~~l~~~l~~ll~~~~~~~---------~~~~g~~~~a~~ 366 (838)
+++|+|+|++| ...||..|++.+++.|+|..+...+++++.+.++|.++++++.... ....+.+++++.
T Consensus 325 ~a~G~P~v~~p--~~~~q~~~~~~v~~~g~g~~~~~~~~~~~~l~~ai~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 402 (412)
T 3otg_A 325 LGAGVPQLSFP--WAGDSFANAQAVAQAGAGDHLLPDNISPDSVSGAAKRLLAEESYRAGARAVAAEIAAMPGPDEVVRL 402 (412)
T ss_dssp HHHTCCEEECC--CSTTHHHHHHHHHHHTSEEECCGGGCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHSCCHHHHHTT
T ss_pred HHhCCCEEecC--CchhHHHHHHHHHHcCCEEecCcccCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHhcCCCHHHHHHH
Confidence 99999999999 4589999999999999999999888888999999999998763211 234577777777
Q ss_pred HHHHhc
Q 003222 367 LQETAI 372 (838)
Q Consensus 367 i~~~~~ 372 (838)
|++++.
T Consensus 403 ~~~l~~ 408 (412)
T 3otg_A 403 LPGFAS 408 (412)
T ss_dssp HHHHHC
T ss_pred HHHHhc
Confidence 777653
|
| >2acv_A Triterpene UDP-glucosyl transferase UGT71G1; glycosyltransferase; HET: UDP; 2.00A {Medicago truncatula} SCOP: c.87.1.10 PDB: 2acw_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=4.3e-22 Score=228.68 Aligned_cols=337 Identities=13% Similarity=0.079 Sum_probs=199.7
Q ss_pred ceEEEEEeecCCCcccHHHHHHHHHHHHHC--CCeEEEEeCCCCc--cccccc-----CCCceeeeeeccCCCccccccc
Q 003222 14 KHLVFAYYVTGHGFGHATRVVEVVRNLISA--GHDVHVVTGAPDF--VFTSEI-----QSPRLFIRKVLLDCGAVQADAL 84 (838)
Q Consensus 14 ~~~~Il~~v~g~G~GHv~r~laLA~~L~~~--Gh~V~~v~~~~~~--~~~~~i-----~~~~~~~~~~~~~~g~~~~~~~ 84 (838)
++++|++ ++.++.||++|+++||+.|+.+ ||+|+|++..... .+...+ ...++.+.... .+.......
T Consensus 8 ~~~~vv~-~p~p~~GHi~P~l~La~~L~~r~pG~~Vt~v~t~~~~~~~~~~~~~~~~~~~~~i~~~~lp--~~~~~~~~~ 84 (463)
T 2acv_A 8 KNSELIF-IPAPGIGHLASALEFAKLLTNHDKNLYITVFCIKFPGMPFADSYIKSVLASQPQIQLIDLP--EVEPPPQEL 84 (463)
T ss_dssp HCEEEEE-ECCSSTTTHHHHHHHHHHHHHTCTTEEEEEEECCCTTCCCCHHHHHHHHCSCTTEEEEECC--CCCCCCGGG
T ss_pred CCCEEEE-EcCcccchHHHHHHHHHHHHhcCCCcEEEEEEcCCcchhhhhhhhhhcccCCCCceEEECC--CCCCCcccc
Confidence 4567755 4788899999999999999999 9999999775321 111111 01345555431 111100000
Q ss_pred ccChHHHHHHHHHHhhccHHHHHHHHHHHHhc---CCCcEEEECC-CchHHHHHHHhCCcEEEEecCch-h-HHHHh---
Q 003222 85 TVDRLASLEKYSETAVAPRKSILKDEVEWLNS---IKADLVVSDV-VPVACRAAADAGIRSVCVTNFSW-D-FIYAE--- 155 (838)
Q Consensus 85 ~~~~~~~l~~~~~~~~~~~~~~l~~~~~~L~~---~kPDlVVsD~-~~~~~~aA~~lgIP~V~is~~~~-~-~i~~~--- 155 (838)
..+.. .. +... .........+++++ .+||+||+|. .+++..+|+.+|||.+.+..... . ..+..
T Consensus 85 ~~~~~-~~--~~~~----~~~~~~~~~~ll~~~~~~~~d~vI~D~~~~~~~~vA~~lgiP~v~~~~~~~~~~~~~~~~~~ 157 (463)
T 2acv_A 85 LKSPE-FY--ILTF----LESLIPHVKATIKTILSNKVVGLVLDFFCVSMIDVGNEFGIPSYLFLTSNVGFLSLMLSLKN 157 (463)
T ss_dssp GGSHH-HH--HHHH----HHHTHHHHHHHHHHHCCTTEEEEEEEGGGGGGHHHHHHTTCCEEEEESSCHHHHHHHHHGGG
T ss_pred cCCcc-HH--HHHH----HHhhhHHHHHHHHhccCCCCeEEEECCcchhHHHHHHHcCCCEEEEeCchHHHHHHHHHHHh
Confidence 01111 11 1111 11122233455555 7899999996 67788899999999887643221 0 00000
Q ss_pred -----------------hhhhc-cc----chH-HH------HHH---HHhhccccceEEecCCCC------------CCC
Q 003222 156 -----------------YVMAA-GH----HHR-SI------VWQ---IAEDYSHCEFLIRLPGYC------------PMP 191 (838)
Q Consensus 156 -----------------~~~~~-~~----~~~-~i------~~~---l~~~y~~~d~ll~~~~~~------------~~p 191 (838)
..+.. .. .+. .+ ... ....+..++.++..++.. ..|
T Consensus 158 ~~~~~~~~~~~~~~~~~~~pg~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~nt~~ele~~~~~~l~~~~~p 237 (463)
T 2acv_A 158 RQIEEVFDDSDRDHQLLNIPGISNQVPSNVLPDACFNKDGGYIAYYKLAERFRDTKGIIVNTFSDLEQSSIDALYDHDEK 237 (463)
T ss_dssp SCTTCCCCCSSGGGCEECCTTCSSCEEGGGSCHHHHCTTTHHHHHHHHHHHHTTSSEEEESCCHHHHHHHHHHHHHHCTT
T ss_pred hcccCCCCCccccCceeECCCCCCCCChHHCchhhcCCchHHHHHHHHHHhcccCCEEEECCHHHHhHHHHHHHHhcccc
Confidence 01111 00 000 00 000 011122233222211110 001
Q ss_pred CCCceeecCcccccCC--------cChHHHHHHhCCCCCCcEEEEEcCCCC-c-hh----hhHHhhCCCCcEEE-EeCCC
Q 003222 192 AFRDVIDVPLVVRRLH--------KSRKEVRKELGIEDDVKLLILNFGGQP-A-GW----KLKEEYLPSGWKCL-VCGAS 256 (838)
Q Consensus 192 ~~~~v~~ip~~~~~~~--------~~~~~~r~~l~~~~~~~~Vlvs~Gs~~-~-~~----~ll~~l~~~~~~~v-v~G~~ 256 (838)
.++++.+|++..... ..+.++.+|++..+++++|||+|||++ . .. ++...+...++.++ ++|..
T Consensus 238 -~~~v~~vGpl~~~~~~~~~~~~~~~~~~~~~wl~~~~~~~vv~vs~GS~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~ 316 (463)
T 2acv_A 238 -IPPIYAVGPLLDLKGQPNPKLDQAQHDLILKWLDEQPDKSVVFLCFGSMGVSFGPSQIREIALGLKHSGVRFLWSNSAE 316 (463)
T ss_dssp -SCCEEECCCCCCSSCCCBTTBCHHHHHHHHHHHHTSCTTCEEEEECCSSCCCCCHHHHHHHHHHHHHHTCEEEEECCCC
T ss_pred -CCcEEEeCCCcccccccccccccccchhHHHHHhcCCCCceEEEEeccccccCCHHHHHHHHHHHHhCCCcEEEEECCC
Confidence 346788888654321 123567888887668899999999998 4 21 23334433456555 45653
Q ss_pred ---C-CC----C--CCCeEECCCCCCHHHHHh--hcCEEEecCChhhHHHHHHcCCcEEEEeCCCCCChHHHHHHH-HHc
Q 003222 257 ---D-SQ----L--PPNFIKLPKDAYTPDFMA--ASDCMLGKIGYGTVSEALAYKLPFVFVRRDYFNEEPFLRNML-EFY 323 (838)
Q Consensus 257 ---~-~~----l--p~nv~~~~~~~~~pdlLa--~adl~It~gG~~Tv~Eal~~GvP~l~iP~~~~~EQ~~Na~~l-~~~ 323 (838)
. .. . ++|+.+++|.+.+ ++|+ ++|+||||||+||++|++++|||+|++| .+.||+.||+++ ++.
T Consensus 317 ~~~l~~~~~~~~~~~~~~~v~~w~pq~-~vL~h~~~~~fvth~G~~s~~Eal~~GvP~i~~P--~~~dQ~~Na~~lv~~~ 393 (463)
T 2acv_A 317 KKVFPEGFLEWMELEGKGMICGWAPQV-EVLAHKAIGGFVSHCGWNSILESMWFGVPILTWP--IYAEQQLNAFRLVKEW 393 (463)
T ss_dssp GGGSCTTHHHHHHHHCSEEEESSCCHH-HHHHSTTEEEEEECCCHHHHHHHHHTTCCEEECC--CSTTHHHHHHHHHHTS
T ss_pred cccCChhHHHhhccCCCEEEEccCCHH-HHhCCCccCeEEecCCchhHHHHHHcCCCeeecc--chhhhHHHHHHHHHHc
Confidence 1 11 2 5677876544322 7887 5999999999999999999999999999 689999999995 899
Q ss_pred CcEEEE-e---cC--CCChhhHHHHHHHHhhCCCCccCCCCHHHHHHHHHHHHh
Q 003222 324 QGGVEM-I---RR--DLLTGHWKPYLERAISLKPCYEGGINGGEVAAHILQETA 371 (838)
Q Consensus 324 G~g~~l-~---~~--~~~~~~l~~~l~~ll~~~~~~~~~~~g~~~~a~~i~~~~ 371 (838)
|+|+.+ . .. .++.+.+.++|++++++. ....+.|..+.+.+
T Consensus 394 g~g~~l~~~~~~~~~~~~~~~l~~ai~~ll~~~-------~~~r~~a~~l~~~~ 440 (463)
T 2acv_A 394 GVGLGLRVDYRKGSDVVAAEEIEKGLKDLMDKD-------SIVHKKVQEMKEMS 440 (463)
T ss_dssp CCEEESCSSCCTTCCCCCHHHHHHHHHHHTCTT-------CTHHHHHHHHHHHH
T ss_pred CeEEEEecccCCCCccccHHHHHHHHHHHHhcc-------HHHHHHHHHHHHHH
Confidence 999998 3 34 678899999999998522 23555556665554
|
| >2hfs_A Mevalonate kinase, putative; GHMP kinase, trypanosomatid parasite, transferase; 1.75A {Leishmania major} PDB: 2hfu_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=1.1e-22 Score=223.58 Aligned_cols=189 Identities=18% Similarity=0.186 Sum_probs=145.7
Q ss_pred CceEEEEccccccccccccccCCCeeeccccccceEEEEEEcCCccchhhhhhhhccCCCCCCCCCeEEEEecccccCCC
Q 003222 495 EEIFVARAPGRLDVMGGIADYSGSLVLQMPIREACHVALQKISPSKQRLWKHALARHNDKGQGPMPVLQIVSYGSELSNR 574 (838)
Q Consensus 495 ~~~~~~~APGRv~L~GeH~Dy~gg~vl~~ai~~~~~v~~~~~~d~~~~l~~~~~~~~~~~~~~~~~~i~i~s~~~~~~~~ 574 (838)
++.+.++|||||||+|||+||+|+.++.++|++++++.+.++++. +.+.+.+..
T Consensus 11 ~~~~~~~ApgKi~L~Geh~~~~G~~~l~~ai~~~~~v~v~~~~~~--------------------~~~~~~~~~------ 64 (332)
T 2hfs_A 11 KTTGKNIGYGKVILFGEHFVVHGAEAIVAGISEYTECRLEINPGV--------------------PGLQVDDQR------ 64 (332)
T ss_dssp BCCSCCEEEEEEEEECTTGGGGTCCEEEEEEEEEEEEEEEEETTC--------------------CSEEEEECC------
T ss_pred CCeEEEEEeEEEEEecCCEEEcCCeEEEEEecccEEEEEEEcCCC--------------------CCeEEEecC------
Confidence 455678999999999999999999999999999999999876421 113332210
Q ss_pred CCceeccCCccccCCCCcchhhhhcccCCCCCCChhHHHHHHHHHHHHHhCCCC-CCCEEEEEEeCCCCCCCCChHHHHH
Q 003222 575 GPTFDMDLSDFMDEGKPMSYEKAKKYFDTNPSQKWAAYVAGTILVLMTELGVRF-EDSISMLVSSAVPEGKGVSSSASVE 653 (838)
Q Consensus 575 ~~~~~~~l~~~~~~~~p~~~~~~~~~~~~~~~~~w~~y~~g~i~~~~~~~g~~~-~~g~~i~i~s~iP~g~GLgSSAA~~ 653 (838)
..++ ... ....|.+..++..+++..|... ..|++|.+.++||.|+|||||||++
T Consensus 65 ---~~~~----------~~~------------~~~~~~~~~a~~~~~~~~g~~~~~~g~~i~i~~~iP~g~GLGSSsA~~ 119 (332)
T 2hfs_A 65 ---PAIP----------GYI------------AQKRDEQIKAHQLVLDHLKVDLSGDGLKMFIGGPLVPSSGIGASASDV 119 (332)
T ss_dssp ---CCCT----------THH------------HHHHHHHHHHHHHHHHHTTBCCSSSEEEEEEECSCCCCTTSCHHHHHH
T ss_pred ---cccc----------ccc------------cccchhHHHHHHHHHHHcCCccCCCceEEEEEcCCCCCCCccHHHHHH
Confidence 0010 000 0123444445566666666542 1599999999999999999999999
Q ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHhhhcCCCCChhhHHHhhcCCCCeEEEEEecCCc-eeeeeccCCCeEEEEEeC
Q 003222 654 VASMSAIAAAHGLNIHPRDLALLCQKVENHIVGAPCGVMDQMASACGEANKLLAMVCQPAE-LLGVVEIPSHIRFWGIDS 732 (838)
Q Consensus 654 va~~~al~~l~~~~l~~~ela~~a~~~E~~~~G~~~G~mDq~a~~~G~~~~~l~~d~~~~~-~~~~v~~~~~~~~vi~~s 732 (838)
+|++.|++.++|.++++.+++++|+++|+.++|.|||+ |+.++++||. +++.....+ ...++++++++.++++++
T Consensus 120 ~a~~~al~~l~~~~l~~~~l~~~a~~~E~~~~G~~~G~-D~~~~~~Gg~---~~~~~~~g~~~~~~~~~~~~~~~vl~~~ 195 (332)
T 2hfs_A 120 VAFSRALSELYQLNLTDEEVNLSAFVGEGGYHGTPSGA-DNTAATYGGL---ILYRRQNGKSVFKPIAFQQRLYLVVVGT 195 (332)
T ss_dssp HHHHHHHHHHHTCCCCHHHHHHHHHHHGGGSSSCCCSH-HHHHHHHCEE---EEEEECSSSEEEEEECCCSCEEEEEEEC
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhcCCCCcH-hHHHHhcCCe---EEEecCCCCcceeeecCCCCcEEEEEEC
Confidence 99999999999999999999999999999999999996 9999999993 444333333 336777777899999999
Q ss_pred CCCCcC
Q 003222 733 GIRHSV 738 (838)
Q Consensus 733 ~~~~~~ 738 (838)
++++++
T Consensus 196 ~~~~~T 201 (332)
T 2hfs_A 196 GINAST 201 (332)
T ss_dssp SCCCCH
T ss_pred CCCccH
Confidence 999876
|
| >1kkh_A Mevalonate kinase; mixed beta sheet, phosphate-binding loop, beta-alpha-beta, transferase; 2.40A {Methanocaldococcus jannaschii} SCOP: d.14.1.5 d.58.26.3 PDB: 1vis_A | Back alignment and structure |
|---|
Probab=99.89 E-value=1e-22 Score=222.27 Aligned_cols=192 Identities=13% Similarity=0.178 Sum_probs=142.3
Q ss_pred eEEEEccccccccccccccCCCeeeccccccceEEEEEEcCCccchhhhhhhhccCCCCCCCCCeEEEEecccccCCCCC
Q 003222 497 IFVARAPGRLDVMGGIADYSGSLVLQMPIREACHVALQKISPSKQRLWKHALARHNDKGQGPMPVLQIVSYGSELSNRGP 576 (838)
Q Consensus 497 ~~~~~APGRv~L~GeH~Dy~gg~vl~~ai~~~~~v~~~~~~d~~~~l~~~~~~~~~~~~~~~~~~i~i~s~~~~~~~~~~ 576 (838)
.+.++|||||||+|||+||+|++++++||++++++.+++++++.++ +.+.+.+ .
T Consensus 5 ~~~~~APgki~L~geh~~~~G~~~l~~ai~~~~~v~v~~~~~~~i~---------------------i~~~~~~-----~ 58 (317)
T 1kkh_A 5 HMIIETPSKVILFGEHAVVYGYRAISMAIDLTSTIEIKETQEDEII---------------------LNLNDLN-----K 58 (317)
T ss_dssp CEEEEEEEEEEEECTTGGGGTCCEEEEEEEEEEEEEEEECCSSEEE---------------------EEETTTT-----E
T ss_pred CEEEEccEEEEEEcCCeeEcCCEEEEEEecCeEEEEEEECCCCeEE---------------------EEeCCCC-----C
Confidence 4678999999999999999999999999999999999987664433 3221100 0
Q ss_pred ceeccCCccccCCCCcchhhhhcccCCCCCCChhHHHHHHHHHHHH---HhCCCCCCCEEEEEEeCCCCCCCCChHHHHH
Q 003222 577 TFDMDLSDFMDEGKPMSYEKAKKYFDTNPSQKWAAYVAGTILVLMT---ELGVRFEDSISMLVSSAVPEGKGVSSSASVE 653 (838)
Q Consensus 577 ~~~~~l~~~~~~~~p~~~~~~~~~~~~~~~~~w~~y~~g~i~~~~~---~~g~~~~~g~~i~i~s~iP~g~GLgSSAA~~ 653 (838)
..++++++.. + ..+..| ++++.++..+.. ..+.....|+++.+.++||.|+|||||||++
T Consensus 59 ~~~~~~~~~~----~------------~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~g~~i~i~~~iP~~~GLGsSsa~~ 121 (317)
T 1kkh_A 59 SLGLNLNEIK----N------------INPNNF-GDFKYCLCAIKNTLDYLNIEPKTGFKINISSKIPISCGLGSSASIT 121 (317)
T ss_dssp EEEEETTTGG----G------------CCGGGS-GGGHHHHHHHHHHHHHTTCCCCSCEEEEEEECSCSSSSSCHHHHHH
T ss_pred ceEEEeccCC----c------------cCcccc-hHHHHHHHHHHHHHHhhcccCCCCeEEEEecCCCCCCCchHHHHHH
Confidence 0112221100 0 012356 555665554422 2343323699999999999999999999999
Q ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHhhhcCCCCChhhHHHhhcCCCCeEEEEEecCCceeeeeccC--C----CeEE
Q 003222 654 VASMSAIAAAHGLNIHPRDLALLCQKVENHIVGAPCGVMDQMASACGEANKLLAMVCQPAELLGVVEIP--S----HIRF 727 (838)
Q Consensus 654 va~~~al~~l~~~~l~~~ela~~a~~~E~~~~G~~~G~mDq~a~~~G~~~~~l~~d~~~~~~~~~v~~~--~----~~~~ 727 (838)
+|++.|++.++|.++++++++++|+++|+.++|.+|| +|+.++++||. +++ ++... ++++++ . ++.+
T Consensus 122 ~a~~~al~~l~~~~l~~~~l~~~a~~~E~~~~g~~sg-~D~~~~~~Gg~---~~~--~~~~~-~~~~~~~~~~l~~~~~~ 194 (317)
T 1kkh_A 122 IGTIKAVSGFYNKELKDDEIAKLGYMVEKEIQGKASI-TDTSTITYKGI---LEI--KNNKF-RKIKGEFEEFLKNCKFL 194 (317)
T ss_dssp HHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHSSSCCS-HHHHHHHHCSE---EEE--SSSCE-EEECHHHHHHHHTCCEE
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhcCCCch-HHHHHHHhCCe---EEE--cCCCc-eEecCCcccccccCcEE
Confidence 9999999999999999999999999999999999998 89999999984 333 34333 555432 1 2578
Q ss_pred EEEeCCCCCcC
Q 003222 728 WGIDSGIRHSV 738 (838)
Q Consensus 728 vi~~s~~~~~~ 738 (838)
+++++++++++
T Consensus 195 vl~~~~~~~~T 205 (317)
T 1kkh_A 195 IVYAEKRKKKT 205 (317)
T ss_dssp EEEEECCCSCH
T ss_pred EEEECCCcCcH
Confidence 99999999875
|
| >2oi2_A Mevalonate kinase; enzyme-inhibitor complex, transferase; HET: DP6; 2.50A {Streptococcus pneumoniae} | Back alignment and structure |
|---|
Probab=99.85 E-value=1.6e-20 Score=202.36 Aligned_cols=170 Identities=19% Similarity=0.245 Sum_probs=126.9
Q ss_pred eEEEEccccccccccccccCCCeeecccc-ccceEEEEEEcCCccchhhhhhhhccCCCCCCCCCeEEEEecccccCCCC
Q 003222 497 IFVARAPGRLDVMGGIADYSGSLVLQMPI-REACHVALQKISPSKQRLWKHALARHNDKGQGPMPVLQIVSYGSELSNRG 575 (838)
Q Consensus 497 ~~~~~APGRv~L~GeH~Dy~gg~vl~~ai-~~~~~v~~~~~~d~~~~l~~~~~~~~~~~~~~~~~~i~i~s~~~~~~~~~ 575 (838)
++.++|||||||+|||+||+|+.++.+|| ++++++.++++++ .+++
T Consensus 5 ~~~~~aP~ki~L~Ge~~~~~g~~~l~~ai~~~~~~v~v~~~~~-~~~i-------------------------------- 51 (292)
T 2oi2_A 5 VGVGQAHSKIILIGEHAVVYGYPAISLPLLEVEVTCKVVPAES-PWRL-------------------------------- 51 (292)
T ss_dssp CEEEEEEEEEEEECTTGGGGTCCEEEEEEEEEEEEEEEEECSS-CCCC--------------------------------
T ss_pred cEEEEeeeEEEEEeCCeeecCCcEEEEEEcCcEEEEEEEECCC-ceEE--------------------------------
Confidence 46789999999999999999999999999 9999999987632 1111
Q ss_pred CceeccCCccccCCCCcchhhhhcccCCCCCCChhHHHHHHHHHHHHHhCCCCCCCEEEEEEeCCCCCCCCChHHHHHHH
Q 003222 576 PTFDMDLSDFMDEGKPMSYEKAKKYFDTNPSQKWAAYVAGTILVLMTELGVRFEDSISMLVSSAVPEGKGVSSSASVEVA 655 (838)
Q Consensus 576 ~~~~~~l~~~~~~~~p~~~~~~~~~~~~~~~~~w~~y~~g~i~~~~~~~g~~~~~g~~i~i~s~iP~g~GLgSSAA~~va 655 (838)
.... ..|.+.-+...+ .|+. ..|++|.+.++||.|+|||||||.++|
T Consensus 52 -----~~~~------------------------~~~~~~~~~~~~---~~~~-~~g~~i~i~~~iP~g~GLGSSsa~~~a 98 (292)
T 2oi2_A 52 -----YEED------------------------TLSMAVYASLEY---LNIT-EACIRCEIDSAIPEKRGMGSSAAISIA 98 (292)
T ss_dssp -----CCCS------------------------HHHHHHHHHHHH---HTCS-CCCEEEEEC----CCGGGSCHHHHHHH
T ss_pred -----EecC------------------------ccchhhhhhHHH---hccc-CCceEEEEEecCCCCCCchHHHHHHHH
Confidence 0000 012111111211 2543 269999999999999999999999999
Q ss_pred HHHHHHHHhCCCCCHHHHHHHHHHHHhhhcCCCCChhhHHHhhcCCCCeEEEEEecCCceeeeeccC-CCeEEEEEeCCC
Q 003222 656 SMSAIAAAHGLNIHPRDLALLCQKVENHIVGAPCGVMDQMASACGEANKLLAMVCQPAELLGVVEIP-SHIRFWGIDSGI 734 (838)
Q Consensus 656 ~~~al~~l~~~~l~~~ela~~a~~~E~~~~G~~~G~mDq~a~~~G~~~~~l~~d~~~~~~~~~v~~~-~~~~~vi~~s~~ 734 (838)
++.|++.++|.++++++++++|+++|+.++|+|||+ |++++++||. +++ ++.. ..++++++ ..+ ++|+++++
T Consensus 99 ~~~al~~~~~~~l~~~~l~~la~~~E~~~~~~p~g~-d~~~~~~gg~---~~~-~~~~-~~~~~~~~~~~~-~~i~~~~~ 171 (292)
T 2oi2_A 99 AIRAVFDYYQADLPHDVLEILVNRAEMIAHMNPSGL-DAKTCLSDQP---IRF-IKNV-GFTELEMDLSAY-LVIADTGV 171 (292)
T ss_dssp HHHHHHHHHTCCCCHHHHHHHHHHHHHHTTCCCCSH-HHHHHTCSSC---EEE-ETTT-EEEECCCCCSCE-EEEEECSS
T ss_pred HHHHHHHHhCCCCCHHHHHHHHHHHHHHhcCCCCch-hHHHHhcCce---EEE-EcCC-CceeecCCCCCE-EEEEECCC
Confidence 999999999999999999999999999999999995 9999999985 344 3332 23555543 344 88999999
Q ss_pred CCcCC
Q 003222 735 RHSVG 739 (838)
Q Consensus 735 ~~~~~ 739 (838)
++++.
T Consensus 172 ~~sT~ 176 (292)
T 2oi2_A 172 YGHTR 176 (292)
T ss_dssp CCCHH
T ss_pred CCcHH
Confidence 88763
|
| >1f0k_A MURG, UDP-N-acetylglucosamine-N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol...; rossmann fold, transferase; 1.90A {Escherichia coli} SCOP: c.87.1.2 PDB: 1nlm_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=1.1e-18 Score=192.87 Aligned_cols=321 Identities=16% Similarity=0.034 Sum_probs=196.3
Q ss_pred EEEEEeecCCCcccHHHHHHHHHHHHHCCCeEEEEeCCCCcccccccCCCceeeeeeccCCCcccccccccChHHHHHHH
Q 003222 16 LVFAYYVTGHGFGHATRVVEVVRNLISAGHDVHVVTGAPDFVFTSEIQSPRLFIRKVLLDCGAVQADALTVDRLASLEKY 95 (838)
Q Consensus 16 ~~Il~~v~g~G~GHv~r~laLA~~L~~~Gh~V~~v~~~~~~~~~~~i~~~~~~~~~~~~~~g~~~~~~~~~~~~~~l~~~ 95 (838)
|+|+++..+.| ||..++..||++|.++||+|++++...... ...+...++.+..... .++. .......+...
T Consensus 7 mkIl~~~~~~g-G~~~~~~~la~~L~~~G~~V~v~~~~~~~~-~~~~~~~g~~~~~~~~-~~~~-----~~~~~~~~~~~ 78 (364)
T 1f0k_A 7 KRLMVMAGGTG-GHVFPGLAVAHHLMAQGWQVRWLGTADRME-ADLVPKHGIEIDFIRI-SGLR-----GKGIKALIAAP 78 (364)
T ss_dssp CEEEEECCSSH-HHHHHHHHHHHHHHTTTCEEEEEECTTSTH-HHHGGGGTCEEEECCC-CCCT-----TCCHHHHHTCH
T ss_pred cEEEEEeCCCc-cchhHHHHHHHHHHHcCCEEEEEecCCcch-hhhccccCCceEEecC-CccC-----cCccHHHHHHH
Confidence 68888876655 999999999999999999999998754211 1111111233322110 0100 00000111001
Q ss_pred HHHhhccHHHHHHHHHHHHhcCCCcEEEECCCc---hHHHHHHHhCCcEEEEecCchhHHHHhhhhhcccchHHHHHHHH
Q 003222 96 SETAVAPRKSILKDEVEWLNSIKADLVVSDVVP---VACRAAADAGIRSVCVTNFSWDFIYAEYVMAAGHHHRSIVWQIA 172 (838)
Q Consensus 96 ~~~~~~~~~~~l~~~~~~L~~~kPDlVVsD~~~---~~~~aA~~lgIP~V~is~~~~~~i~~~~~~~~~~~~~~i~~~l~ 172 (838)
.. ....+....+++++.+||+|+++..+ .+..+++..++|+|....-.+.... ..
T Consensus 79 ~~-----~~~~~~~l~~~l~~~~pDvv~~~~~~~~~~~~~~~~~~~~p~v~~~~~~~~~~~---------------~~-- 136 (364)
T 1f0k_A 79 LR-----IFNAWRQARAIMKAYKPDVVLGMGGYVSGPGGLAAWSLGIPVVLHEQNGIAGLT---------------NK-- 136 (364)
T ss_dssp HH-----HHHHHHHHHHHHHHHCCSEEEECSSTTHHHHHHHHHHTTCCEEEEECSSSCCHH---------------HH--
T ss_pred HH-----HHHHHHHHHHHHHhcCCCEEEEeCCcCchHHHHHHHHcCCCEEEEecCCCCcHH---------------HH--
Confidence 11 01123445677889999999998632 3456778889999865332111000 01
Q ss_pred hhccccceEEecCCCCCCCCCCceeecCcccccCCcChHHHHHHhCCCCCCcEEEEEcCCCCch--hhhH-Hh---hCCC
Q 003222 173 EDYSHCEFLIRLPGYCPMPAFRDVIDVPLVVRRLHKSRKEVRKELGIEDDVKLLILNFGGQPAG--WKLK-EE---YLPS 246 (838)
Q Consensus 173 ~~y~~~d~ll~~~~~~~~p~~~~v~~ip~~~~~~~~~~~~~r~~l~~~~~~~~Vlvs~Gs~~~~--~~ll-~~---l~~~ 246 (838)
..+..++.++.... ...+ ...+++.|+........ ..++.++++++.++|++++|+.... .+++ ++ +..
T Consensus 137 ~~~~~~d~v~~~~~-~~~~-~~~~i~n~v~~~~~~~~--~~~~~~~~~~~~~~il~~~g~~~~~k~~~~li~a~~~l~~- 211 (364)
T 1f0k_A 137 WLAKIATKVMQAFP-GAFP-NAEVVGNPVRTDVLALP--LPQQRLAGREGPVRVLVVGGSQGARILNQTMPQVAAKLGD- 211 (364)
T ss_dssp HHTTTCSEEEESST-TSSS-SCEECCCCCCHHHHTSC--CHHHHHTTCCSSEEEEEECTTTCCHHHHHHHHHHHHHHGG-
T ss_pred HHHHhCCEEEecCh-hhcC-CceEeCCccchhhcccc--hhhhhcccCCCCcEEEEEcCchHhHHHHHHHHHHHHHhcC-
Confidence 11223444443211 1111 11233333322111111 1245567666777788888887653 2222 32 322
Q ss_pred CcE-EEEeCCCCCC--------CC-CCeEECCCCCCHHHHHhhcCEEEecCChhhHHHHHHcCCcEEEEeCCCC-CChHH
Q 003222 247 GWK-CLVCGASDSQ--------LP-PNFIKLPKDAYTPDFMAASDCMLGKIGYGTVSEALAYKLPFVFVRRDYF-NEEPF 315 (838)
Q Consensus 247 ~~~-~vv~G~~~~~--------lp-~nv~~~~~~~~~pdlLa~adl~It~gG~~Tv~Eal~~GvP~l~iP~~~~-~EQ~~ 315 (838)
++. ++++|..... ++ +||++.++++.++++|+.||++|+++|.+++.||+++|+|+|+.+.... .+|..
T Consensus 212 ~~~~l~i~G~~~~~~l~~~~~~~~~~~v~~~g~~~~~~~~~~~ad~~v~~sg~~~~~EAma~G~Pvi~~~~~g~~~~q~~ 291 (364)
T 1f0k_A 212 SVTIWHQSGKGSQQSVEQAYAEAGQPQHKVTEFIDDMAAAYAWADVVVCRSGALTVSEIAAAGLPALFVPFQHKDRQQYW 291 (364)
T ss_dssp GEEEEEECCTTCHHHHHHHHHHTTCTTSEEESCCSCHHHHHHHCSEEEECCCHHHHHHHHHHTCCEEECCCCCTTCHHHH
T ss_pred CcEEEEEcCCchHHHHHHHHhhcCCCceEEecchhhHHHHHHhCCEEEECCchHHHHHHHHhCCCEEEeeCCCCchhHHH
Confidence 566 4567766421 22 5899999998899999999999999998999999999999999986544 57899
Q ss_pred HHHHHHHcCcEEEEecCCCChhhHHHHHHHHhhCCCCc---------cCCCCHHHHHHHHHHHHhcc
Q 003222 316 LRNMLEFYQGGVEMIRRDLLTGHWKPYLERAISLKPCY---------EGGINGGEVAAHILQETAIG 373 (838)
Q Consensus 316 Na~~l~~~G~g~~l~~~~~~~~~l~~~l~~ll~~~~~~---------~~~~~g~~~~a~~i~~~~~~ 373 (838)
|++.+++.|.|..++..+++++.+.++|.++ ++..+ .....+.+++++.++++...
T Consensus 292 ~~~~~~~~g~g~~~~~~d~~~~~la~~i~~l--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~ 356 (364)
T 1f0k_A 292 NALPLEKAGAAKIIEQPQLSVDAVANTLAGW--SRETLLTMAERARAASIPDATERVANEVSRVARA 356 (364)
T ss_dssp HHHHHHHTTSEEECCGGGCCHHHHHHHHHTC--CHHHHHHHHHHHHHTCCTTHHHHHHHHHHHHHTT
T ss_pred HHHHHHhCCcEEEeccccCCHHHHHHHHHhc--CHHHHHHHHHHHHHhhccCHHHHHHHHHHHHHHH
Confidence 9999999999999988877778888888766 33211 03467788888888887654
|
| >3hbm_A UDP-sugar hydrolase; PSEG; 1.80A {Campylobacter jejuni subsp} PDB: 3hbn_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=2.1e-18 Score=183.98 Aligned_cols=246 Identities=15% Similarity=0.176 Sum_probs=152.7
Q ss_pred EEEEee---cCCCcccHHHHHHHHHHHHHCCCeEEEEeCCCCcccccccCCCceeeeeeccCCCcccccccccChHHHHH
Q 003222 17 VFAYYV---TGHGFGHATRVVEVVRNLISAGHDVHVVTGAPDFVFTSEIQSPRLFIRKVLLDCGAVQADALTVDRLASLE 93 (838)
Q Consensus 17 ~Il~~v---~g~G~GHv~r~laLA~~L~~~Gh~V~~v~~~~~~~~~~~i~~~~~~~~~~~~~~g~~~~~~~~~~~~~~l~ 93 (838)
+|+|.+ ...|+||++||++||++|+ +|.|+|......+...+ ++.+.. ... .+
T Consensus 2 ki~ir~Da~~~IG~GHvmRcl~LA~~l~----~v~F~~~~~~~~~~~~~---g~~v~~-------l~~----~d------ 57 (282)
T 3hbm_A 2 KVLFRSDSSSQIGFGHIKRDLVLAKQYS----DVSFACLPLEGSLIDEI---PYPVYE-------LSS----ES------ 57 (282)
T ss_dssp CEEEEECCBTTTBSHHHHHHHHHHTTCS----SEEEEECCCTTCCGGGC---CSCEEE-------CSS----SC------
T ss_pred EEEEEEecCCCccccHHHHHHHHHHHHH----hCEEEEecCcHhHHHHC---CCeEEE-------cCc----cC------
Confidence 344443 5678999999999999998 89999875322111111 111111 000 00
Q ss_pred HHHHHhhccHHHHHHHHHHHHhcCCCcEEEECCCchHHHHH---HH-hCCcEEEEecCchhHHHHhhhhhcccchHHHHH
Q 003222 94 KYSETAVAPRKSILKDEVEWLNSIKADLVVSDVVPVACRAA---AD-AGIRSVCVTNFSWDFIYAEYVMAAGHHHRSIVW 169 (838)
Q Consensus 94 ~~~~~~~~~~~~~l~~~~~~L~~~kPDlVVsD~~~~~~~aA---~~-lgIP~V~is~~~~~~i~~~~~~~~~~~~~~i~~ 169 (838)
..+..+++++.+||+||.|++.....+- +. .+++.+.++++.- .+
T Consensus 58 -------------~~~~~~~l~~~~~d~lIvD~Y~~~~~~~~~lk~~~~~~i~~iDD~~~-----~~------------- 106 (282)
T 3hbm_A 58 -------------IYELINLIKEEKFELLIIDHYGISVDDEKLIKLETGVKILSFDDEIK-----PH------------- 106 (282)
T ss_dssp -------------HHHHHHHHHHHTCSEEEEECTTCCHHHHHHHHHHHCCEEEEECSSCC-----CC-------------
T ss_pred -------------HHHHHHHHHhCCCCEEEEECCCCCHHHHHHHHHhcCcEEEEEecCCC-----cc-------------
Confidence 1122445677899999999855443332 22 4789999987641 00
Q ss_pred HHHhhccccceEEecCCC-------CCCCCCCceeecCcccccCCcChHHHHHHhC-CCCCCcEEEEEcCCCCch---hh
Q 003222 170 QIAEDYSHCEFLIRLPGY-------CPMPAFRDVIDVPLVVRRLHKSRKEVRKELG-IEDDVKLLILNFGGQPAG---WK 238 (838)
Q Consensus 170 ~l~~~y~~~d~ll~~~~~-------~~~p~~~~v~~ip~~~~~~~~~~~~~r~~l~-~~~~~~~Vlvs~Gs~~~~---~~ 238 (838)
.+|.++..... ...|.. .....|+.. .+.+++..+.-. ...+.+.|++++||.+.. .+
T Consensus 107 -------~~Dllin~~~~~~~~~Y~~~~p~~-~~~l~G~~Y---~~lR~eF~~~~~~~r~~~~~ILv~~GG~d~~~l~~~ 175 (282)
T 3hbm_A 107 -------HCDILLNVNAYAKASDYEGLVPFK-CEVRCGFSY---ALIREEFYQEAKENRKKKYDFFICMGGTDIKNLSLQ 175 (282)
T ss_dssp -------CCSEEEECSTTCCGGGGTTTCC-C-CEEEESGGG---CCCCHHHHHHTTCCCCCCEEEEEECCSCCTTCHHHH
T ss_pred -------cCCEEEeCCcccchhhccccCCCC-CeEeeCCcc---cccCHHHHHhhhhccccCCeEEEEECCCchhhHHHH
Confidence 12222221100 000100 011223211 122334332211 123456899999988653 34
Q ss_pred hHHhhCCCCcEEEEeCCCCCC---------CCCCeEECCCCCCHHHHHhhcCEEEecCChhhHHHHHHcCCcEEEEeCCC
Q 003222 239 LKEEYLPSGWKCLVCGASDSQ---------LPPNFIKLPKDAYTPDFMAASDCMLGKIGYGTVSEALAYKLPFVFVRRDY 309 (838)
Q Consensus 239 ll~~l~~~~~~~vv~G~~~~~---------lp~nv~~~~~~~~~pdlLa~adl~It~gG~~Tv~Eal~~GvP~l~iP~~~ 309 (838)
+++++.......+++|++.+. ..+|+.+.+|+++|+++|+.||++||+|| +|++|++++|+|+|++|.
T Consensus 176 vl~~L~~~~~i~vv~G~~~~~~~~l~~~~~~~~~v~v~~~~~~m~~~m~~aDlvI~~gG-~T~~E~~~~g~P~i~ip~-- 252 (282)
T 3hbm_A 176 IASELPKTKIISIATSSSNPNLKKLQKFAKLHNNIRLFIDHENIAKLMNESNKLIISAS-SLVNEALLLKANFKAICY-- 252 (282)
T ss_dssp HHHHSCTTSCEEEEECTTCTTHHHHHHHHHTCSSEEEEESCSCHHHHHHTEEEEEEESS-HHHHHHHHTTCCEEEECC--
T ss_pred HHHHhhcCCCEEEEECCCchHHHHHHHHHhhCCCEEEEeCHHHHHHHHHHCCEEEECCc-HHHHHHHHcCCCEEEEeC--
Confidence 555554433455677887653 13589999999999999999999999988 899999999999999994
Q ss_pred CCChHHHHHHHHHcCcEEEEec
Q 003222 310 FNEEPFLRNMLEFYQGGVEMIR 331 (838)
Q Consensus 310 ~~EQ~~Na~~l~~~G~g~~l~~ 331 (838)
..+|..||+.+++.|+++.+..
T Consensus 253 ~~~Q~~nA~~l~~~G~~~~~~~ 274 (282)
T 3hbm_A 253 VKNQESTATWLAKKGYEVEYKY 274 (282)
T ss_dssp SGGGHHHHHHHHHTTCEEECGG
T ss_pred CCCHHHHHHHHHHCCCEEEcch
Confidence 4689999999999999988763
|
| >1h72_C HK, homoserine kinase; transferase, threonine biosynthesis; HET: ANP; 1.8A {Methanococcus jannaschii} SCOP: d.14.1.5 d.58.26.1 PDB: 1fwl_A 1fwk_A* 1h73_A* 1h74_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=4.3e-18 Score=183.81 Aligned_cols=175 Identities=17% Similarity=0.177 Sum_probs=134.0
Q ss_pred EEEEccccccccccccccCCCeeecccccc-ceEEEEEEcCCccchhhhhhhhccCCCCCCCCCeEEEEecccccCCCCC
Q 003222 498 FVARAPGRLDVMGGIADYSGSLVLQMPIRE-ACHVALQKISPSKQRLWKHALARHNDKGQGPMPVLQIVSYGSELSNRGP 576 (838)
Q Consensus 498 ~~~~APGRv~L~GeH~Dy~gg~vl~~ai~~-~~~v~~~~~~d~~~~l~~~~~~~~~~~~~~~~~~i~i~s~~~~~~~~~~ 576 (838)
+.++||+|++.+|+|.| ++++++|. .+++.+.+++++. +.+..
T Consensus 3 i~v~aPaki~nlG~g~~-----vl~~a~d~~~~~~~~~~~~~~~---------------------~~i~~---------- 46 (296)
T 1h72_C 3 VRVKAPCTSANLGVGFD-----VFGLCLKEPYDVIEVEAIDDKE---------------------IIIEV---------- 46 (296)
T ss_dssp EEEEEEEEEECTGGGTT-----TEEEEEEEEEEEEEEEEESSSS---------------------EEEEE----------
T ss_pred EEEEEEeehhccccchh-----hhHHhcccccEEEEEEecCCCe---------------------EEEEE----------
Confidence 57899999999999776 89999998 4555565554321 22221
Q ss_pred ceeccCCccccCCCCcchhhhhcccCCCCCCChhHHHHHHHHHHHHHhCCCCCCCEEEEEEeCCCCCCCCChHHHHHHHH
Q 003222 577 TFDMDLSDFMDEGKPMSYEKAKKYFDTNPSQKWAAYVAGTILVLMTELGVRFEDSISMLVSSAVPEGKGVSSSASVEVAS 656 (838)
Q Consensus 577 ~~~~~l~~~~~~~~p~~~~~~~~~~~~~~~~~w~~y~~g~i~~~~~~~g~~~~~g~~i~i~s~iP~g~GLgSSAA~~va~ 656 (838)
+-.+ + +.+.|.||+..++..+.+..|.. .|++|.+.++||.|+|||||||.++|+
T Consensus 47 ----~~~~-------~------------~~~~~~n~v~~a~~~~~~~~g~~--~g~~i~i~~~iP~g~GLGSSsa~~~a~ 101 (296)
T 1h72_C 47 ----DDKN-------I------------PTDPDKNVAGIVAKKMIDDFNIG--KGVKITIKKGVKAGSGLGSSAASSAGT 101 (296)
T ss_dssp ----SCTT-------S------------CCCTTTSHHHHHHHHHHHHTTCC--CEEEEEEECSSCTTSSSCHHHHHHHHH
T ss_pred ----cCCc-------C------------CCCCccCcHHHHHHHHHHHhCCC--CCeEEEEEcCCCCCCCccHHHHHHHHH
Confidence 0001 0 11238899999988887666764 699999999999999999999999999
Q ss_pred HHHHHHHhCCCCCHHHHHHHHHHHHhhhcCCCCChhhHHHhhcCCCCeEEEEEecCCceeeeeccCCCeEEEEEeCCCCC
Q 003222 657 MSAIAAAHGLNIHPRDLALLCQKVENHIVGAPCGVMDQMASACGEANKLLAMVCQPAELLGVVEIPSHIRFWGIDSGIRH 736 (838)
Q Consensus 657 ~~al~~l~~~~l~~~ela~~a~~~E~~~~G~~~G~mDq~a~~~G~~~~~l~~d~~~~~~~~~v~~~~~~~~vi~~s~~~~ 736 (838)
+.|++.++|.++++++++++|+++|..++|.+++ .|-.++++||. +++.++.+..+ .++++|.++.++|+++++..
T Consensus 102 ~~al~~l~~~~l~~~~l~~la~~~e~~~~g~~~~-ddv~~~~~gg~--~~~~~~~~~~~-~~~~~~~~~~~vl~~p~~~~ 177 (296)
T 1h72_C 102 AYAINELFKLNLDKLKLVDYASYGELASSGAKHA-DNVAPAIFGGF--TMVTNYEPLEV-LHIPIDFKLDILIAIPNISI 177 (296)
T ss_dssp HHHHHHHTTCCCCHHHHHHHHHHHHHHHHSSCCC-TTHHHHHHCSE--EEEEETTTTEE-EEECCCSCCCEEEECCSSCC
T ss_pred HHHHHHHhCCCCCHHHHHHHHHHhcCcccCCCCc-cchHHHHhCCE--EEEEeCCceEE-EEEcCCCCeEEEEEeCCCCc
Confidence 9999999999999999999999999999999996 24445899984 33333433323 67777778889999999865
Q ss_pred c
Q 003222 737 S 737 (838)
Q Consensus 737 ~ 737 (838)
+
T Consensus 178 ~ 178 (296)
T 1h72_C 178 N 178 (296)
T ss_dssp C
T ss_pred c
Confidence 4
|
| >2ww4_A 4-diphosphocytidyl-2C-methyl-D-erythritol kinase; non-mevalonate pathway, isoprenoid biosynthesis, transferase; HET: ADP; 2.00A {Escherichia coli} PDB: 1oj4_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=6.2e-18 Score=181.26 Aligned_cols=167 Identities=14% Similarity=0.193 Sum_probs=129.9
Q ss_pred EEEccccccc----cccccc-cCCCeeeccccccceEEEEEEcCCccchhhhhhhhccCCCCCCCCCeEEEEecccccCC
Q 003222 499 VARAPGRLDV----MGGIAD-YSGSLVLQMPIREACHVALQKISPSKQRLWKHALARHNDKGQGPMPVLQIVSYGSELSN 573 (838)
Q Consensus 499 ~~~APGRv~L----~GeH~D-y~gg~vl~~ai~~~~~v~~~~~~d~~~~l~~~~~~~~~~~~~~~~~~i~i~s~~~~~~~ 573 (838)
.++||||||| +|+|+| |+++.++++||+++.++.+.++++++ +++.+
T Consensus 4 ~~~apaKinL~L~v~g~~~dGyh~l~sl~~ai~l~~~v~v~~~~~~~---------------------i~i~~------- 55 (283)
T 2ww4_A 4 QWPSPAKLNLFLYITGQRADGYHTLQTLFQFLDYGDTISIELRDDGD---------------------IRLLT------- 55 (283)
T ss_dssp EEEEEEEEEEEEEEEEECTTSCEEEEEEEEEEEEEEEEEEEEESSSC---------------------EEECS-------
T ss_pred cccCceeEEeeeeccCCCCCCCcceEEEEEECCCCcEEEEEECCCCc---------------------EEEEe-------
Confidence 4689999999 899999 99999999999999999999876533 22221
Q ss_pred CCCceeccCCccccCCCCcchhhhhcccCCCCCCChhHHHHHHHHHHHHHh------CCCCCCCEEEEEEeCCCCCCCCC
Q 003222 574 RGPTFDMDLSDFMDEGKPMSYEKAKKYFDTNPSQKWAAYVAGTILVLMTEL------GVRFEDSISMLVSSAVPEGKGVS 647 (838)
Q Consensus 574 ~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~~~~~~w~~y~~g~i~~~~~~~------g~~~~~g~~i~i~s~iP~g~GLg 647 (838)
+... + + .-.||+..++..+.+.. |.. .|++|.+.++||.|+|||
T Consensus 56 -------~~~~-------~------------~--~~~nlv~~a~~~~~~~~~~~~~~g~~--~g~~i~i~~~IP~g~GLG 105 (283)
T 2ww4_A 56 -------PVEG-------V------------E--HEDNLIVRAARLLMKTAADSGRLPTG--SGANISIDKRLPMGGGLG 105 (283)
T ss_dssp -------CBTT-------B------------C--GGGSHHHHHHHHHHHHHHHTTCSCTT--CEEEEEEECCCC-CTTSC
T ss_pred -------CCCC-------C------------C--CcccHHHHHHHHHHHHhhhhcccCCC--CceEEEEEeCCCCCCCcc
Confidence 0001 0 0 01578888888777665 653 699999999999999999
Q ss_pred hHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhhhcCCCCChhhHHHhhcCCCCeEEEEEecCCceeeeeccCCCeEE
Q 003222 648 SSASVEVASMSAIAAAHGLNIHPRDLALLCQKVENHIVGAPCGVMDQMASACGEANKLLAMVCQPAELLGVVEIPSHIRF 727 (838)
Q Consensus 648 SSAA~~va~~~al~~l~~~~l~~~ela~~a~~~E~~~~G~~~G~mDq~a~~~G~~~~~l~~d~~~~~~~~~v~~~~~~~~ 727 (838)
||||.++|++.|++.++|.++++++++++|+++|. |..++.+||. .+.... .+...++++| ++.+
T Consensus 106 sSsa~~~a~l~al~~l~~~~l~~~~l~~la~~~e~----------dv~~~~~gg~---~~~~g~-g~~~~~l~~~-~~~~ 170 (283)
T 2ww4_A 106 GGSSNAATVLVALNHLWQCGLSMDELAEMGLTLGA----------DVPVFVRGHA---AFAEGV-GEILTPVDPP-EKWY 170 (283)
T ss_dssp HHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHTTCT----------THHHHHHTBC---EEEETT-TTEEEECCCC-CCEE
T ss_pred HHHHHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCC----------CHHHhhcCCe---EEEEec-CccceEcCCC-CcEE
Confidence 99999999999999999999999999999998772 8888999984 333223 3333566666 6888
Q ss_pred EEEeCCCCCcC
Q 003222 728 WGIDSGIRHSV 738 (838)
Q Consensus 728 vi~~s~~~~~~ 738 (838)
+++++++..++
T Consensus 171 vl~~p~~~~sT 181 (283)
T 2ww4_A 171 LVAHPGVSIPT 181 (283)
T ss_dssp EEECCSCCCCH
T ss_pred EEEeCCCCCch
Confidence 99999887653
|
| >2v8p_A 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; nucleotide-binding, isoprene biosynthesis, transferase, ATP-binding, non-mevalonate; HET: CDP ADP; 2.1A {Aquifex aeolicus} PDB: 2v2v_A* 2v2q_A* 2v34_A* 2v2z_A* 2vf3_A* | Back alignment and structure |
|---|
Probab=99.71 E-value=8.7e-17 Score=171.39 Aligned_cols=165 Identities=15% Similarity=0.169 Sum_probs=130.1
Q ss_pred eEEEEccccccc----cccccc-cCCCeeeccccccceEEEEEEcCCccchhhhhhhhccCCCCCCCCCeEEEEeccccc
Q 003222 497 IFVARAPGRLDV----MGGIAD-YSGSLVLQMPIREACHVALQKISPSKQRLWKHALARHNDKGQGPMPVLQIVSYGSEL 571 (838)
Q Consensus 497 ~~~~~APGRv~L----~GeH~D-y~gg~vl~~ai~~~~~v~~~~~~d~~~~l~~~~~~~~~~~~~~~~~~i~i~s~~~~~ 571 (838)
++.++||||||| +|+|.| |+++.++.++|++++++ +.+ +.. +++.+
T Consensus 4 m~~~~aPakinl~l~v~g~r~dgyh~~~sl~~ai~l~~~v-~~~--~~~---------------------i~i~~----- 54 (271)
T 2v8p_A 4 MIKVLSPAKINLGLWVLGRLPSGYHEILTLYQEIPFYDEI-YIR--EGV---------------------LRVET----- 54 (271)
T ss_dssp CEEEEEEEEEEEEEEEEEECTTSCEEEEEEEEEEEEEEEE-EEE--ESS---------------------CEEEE-----
T ss_pred eEEEeecceEEeeEeecccCCCCCceEEEEEEEcCcccEE-EEe--CCe---------------------EEEEe-----
Confidence 677899999999 899999 99999999999999999 886 222 22221
Q ss_pred CCCCCceeccCCccccCCCCcchhhhhcccCCCCCCChhHHHHHHHHHHHHHhCCCCCCCEEEEEEeCCCCCCCCChHHH
Q 003222 572 SNRGPTFDMDLSDFMDEGKPMSYEKAKKYFDTNPSQKWAAYVAGTILVLMTELGVRFEDSISMLVSSAVPEGKGVSSSAS 651 (838)
Q Consensus 572 ~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~~~~~~w~~y~~g~i~~~~~~~g~~~~~g~~i~i~s~iP~g~GLgSSAA 651 (838)
+.+ ...|.|++..++..+.+..|.. .|++|.+.++||.|+|||||||
T Consensus 55 -----------~~~--------------------~~~~~nlv~~a~~~~~~~~g~~--~g~~i~i~~~IP~g~GLGsSsa 101 (271)
T 2v8p_A 55 -----------NIG--------------------IPQEENLVYKGLREFERITGIE--INYSIFIQKNIPPGAGLGGGSS 101 (271)
T ss_dssp -----------SSC--------------------CCTTTCHHHHHHHHHHHHHCCC--CCEEEEEECCSCTTSSSCHHHH
T ss_pred -----------CCC--------------------CCCCchHHHHHHHHHHHHhCCC--CCeEEEEEeCCCCCCCCchHHH
Confidence 010 0246889988888887777764 6999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhhhcCCCCChhhHHHhhcCCCCeEEEEEecCCceeeeeccCCCeEEEEEe
Q 003222 652 VEVASMSAIAAAHGLNIHPRDLALLCQKVENHIVGAPCGVMDQMASACGEANKLLAMVCQPAELLGVVEIPSHIRFWGID 731 (838)
Q Consensus 652 ~~va~~~al~~l~~~~l~~~ela~~a~~~E~~~~G~~~G~mDq~a~~~G~~~~~l~~d~~~~~~~~~v~~~~~~~~vi~~ 731 (838)
..+|++.|++.++|.++++++++++|+++|. |..++.+||. .+. ....+..+++++|.++.+++++
T Consensus 102 ~a~a~l~al~~l~~~~l~~~el~~la~~~e~----------dv~~~~~gg~---~~~-~g~g~~~~~l~~~~~~~~vl~~ 167 (271)
T 2v8p_A 102 NLAVVLKKVNELLGSPLSEEELRELVGSISA----------DAPFFLLGKS---AIG-RGKGEVLEPVETEISGKITLVI 167 (271)
T ss_dssp HHHHHHHHHHHHTTCCSCHHHHHHHHHHHCT----------TTGGGGTCSE---EEE-ETTTTEEEECCCCCCSEEEEEE
T ss_pred HHHHHHHHHHHhcCCCcCHHHHHHHHHHhCC----------CHHHHhcCCe---EEE-EEcCCEEEEccCCCCcEEEEEe
Confidence 9999999999999999999999999999972 6677888883 333 2223333566644478899999
Q ss_pred CCCCCc
Q 003222 732 SGIRHS 737 (838)
Q Consensus 732 s~~~~~ 737 (838)
+++..+
T Consensus 168 p~~~~s 173 (271)
T 2v8p_A 168 PQVSSS 173 (271)
T ss_dssp CSSCCC
T ss_pred CCCCCC
Confidence 987644
|
| >2o6l_A UDP-glucuronosyltransferase 2B7; drug metabolism, rossman, MAD, enzyme, nucleotide binding, sugar,UDP-glucuronosyltransferase, UGT; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.70 E-value=1.3e-16 Score=157.34 Aligned_cols=140 Identities=14% Similarity=0.101 Sum_probs=111.6
Q ss_pred cChHHHHHHhCCCCCCcEEEEEcCCCCc--hh----hhHHhhCCCCcEEEE-eCCCC-CCCCCCeEECCCCCCHHHHH--
Q 003222 208 KSRKEVRKELGIEDDVKLLILNFGGQPA--GW----KLKEEYLPSGWKCLV-CGASD-SQLPPNFIKLPKDAYTPDFM-- 277 (838)
Q Consensus 208 ~~~~~~r~~l~~~~~~~~Vlvs~Gs~~~--~~----~ll~~l~~~~~~~vv-~G~~~-~~lp~nv~~~~~~~~~pdlL-- 277 (838)
+.++++.+++...+++++||+++||.+. .. .+++++...++.+++ +|... ..+++||++.+|.+. .++|
T Consensus 6 ~l~~~~~~~l~~~~~~~~vlv~~Gs~~~~~~~~~~~~~~~al~~~~~~~~~~~g~~~~~~~~~~v~~~~~~~~-~~~l~~ 84 (170)
T 2o6l_A 6 PLPKEMEDFVQSSGENGVVVFSLGSMVSNMTEERANVIASALAQIPQKVLWRFDGNKPDTLGLNTRLYKWIPQ-NDLLGH 84 (170)
T ss_dssp CCCHHHHHHHHTTTTTCEEEEECCSCCTTCCHHHHHHHHHHHTTSSSEEEEECCSSCCTTCCTTEEEESSCCH-HHHHTS
T ss_pred CCCHHHHHHHHcCCCCCEEEEECCCCcccCCHHHHHHHHHHHHhCCCeEEEEECCcCcccCCCcEEEecCCCH-HHHhcC
Confidence 4567888888755577899999999863 22 334455444565554 44433 237889999887654 5788
Q ss_pred hhcCEEEecCChhhHHHHHHcCCcEEEEeCCCCCChHHHHHHHHHcCcEEEEecCCCChhhHHHHHHHHhhCC
Q 003222 278 AASDCMLGKIGYGTVSEALAYKLPFVFVRRDYFNEEPFLRNMLEFYQGGVEMIRRDLLTGHWKPYLERAISLK 350 (838)
Q Consensus 278 a~adl~It~gG~~Tv~Eal~~GvP~l~iP~~~~~EQ~~Na~~l~~~G~g~~l~~~~~~~~~l~~~l~~ll~~~ 350 (838)
+.||+||+|+|++|++|++++|+|+|++| .+.||..|++++++.|+|+.++..+++++.+.++|.++++++
T Consensus 85 ~~ad~~I~~~G~~t~~Ea~~~G~P~i~~p--~~~~Q~~na~~l~~~g~g~~~~~~~~~~~~l~~~i~~ll~~~ 155 (170)
T 2o6l_A 85 PKTRAFITHGGANGIYEAIYHGIPMVGIP--LFADQPDNIAHMKARGAAVRVDFNTMSSTDLLNALKRVINDP 155 (170)
T ss_dssp TTEEEEEECCCHHHHHHHHHHTCCEEECC--CSTTHHHHHHHHHTTTSEEECCTTTCCHHHHHHHHHHHHHCH
T ss_pred CCcCEEEEcCCccHHHHHHHcCCCEEecc--chhhHHHHHHHHHHcCCeEEeccccCCHHHHHHHHHHHHcCH
Confidence 78999999999999999999999999999 468999999999999999999988888899999999999754
|
| >2gs8_A Mevalonate pyrophosphate decarboxylase; streptococcus pyogen structural genomics, PSI, protein structure initiative; HET: MSE; 1.50A {Streptococcus pyogenes m1 gas} | Back alignment and structure |
|---|
Probab=99.64 E-value=3.1e-16 Score=170.99 Aligned_cols=187 Identities=10% Similarity=0.054 Sum_probs=126.6
Q ss_pred ceEEEEccccccccccccccCCCeeeccccccceEEEEEEcCCccchhhhhhhhccCCCCCCCCCeEEEEecccccCCCC
Q 003222 496 EIFVARAPGRLDVMGGIADYSGSLVLQMPIREACHVALQKISPSKQRLWKHALARHNDKGQGPMPVLQIVSYGSELSNRG 575 (838)
Q Consensus 496 ~~~~~~APGRv~L~GeH~Dy~gg~vl~~ai~~~~~v~~~~~~d~~~~l~~~~~~~~~~~~~~~~~~i~i~s~~~~~~~~~ 575 (838)
....++|||||+|+|+|+||++|+++|+...+++.+. ..+++-.++ ..+.+ .
T Consensus 7 ~~~~~~ap~~i~l~~~~g~~~~g~~lp~~dslg~al~-~l~~~~~v~---------------------~~~~~--~---- 58 (317)
T 2gs8_A 7 NVITVTSYANIAIIKYWGKENQAKMIPSTSSISLTLE-NMFTTTSVS---------------------FLPDT--A---- 58 (317)
T ss_dssp CEEEEEEEEEEEEECCCCEEETTTTEESSCEEEEEEE-EEEEEEEEE---------------------ECCTT--C----
T ss_pred CcEEEEecCcEEEEeeeeeccCCcccCCCCceEEEee-cccceEEEE---------------------EEcCC--C----
Confidence 4568899999999999999999999999888876663 233221111 10100 0
Q ss_pred CceeccCCccccCCCCcchhhhhcccCCCCCCChhHHHHHHHHHHHHHhCCCCCCCEEEEEEeCCCCCCCCChHHHHHHH
Q 003222 576 PTFDMDLSDFMDEGKPMSYEKAKKYFDTNPSQKWAAYVAGTILVLMTELGVRFEDSISMLVSSAVPEGKGVSSSASVEVA 655 (838)
Q Consensus 576 ~~~~~~l~~~~~~~~p~~~~~~~~~~~~~~~~~w~~y~~g~i~~~~~~~g~~~~~g~~i~i~s~iP~g~GLgSSAA~~va 655 (838)
+..++.++. .+ ...+|.|+++.++..+.+..+ .|++|.+.++||.|+|||||||.++|
T Consensus 59 ~~~~~~~~g-----~~-------------~~~~~~n~v~~~~~~~~~~~~----~g~~I~i~~~IP~~~GLGSSaA~~vA 116 (317)
T 2gs8_A 59 TSDQFYING-----IL-------------QNDEEHTKISAIIDQFRQPGQ----AFVKMETQNNMPTAAGLSSSSSGLSA 116 (317)
T ss_dssp CSCEEEETT-----EE-------------CCHHHHHHHHHHHTTTCCTTC----CCEEEEEECCSCGGGCCCHHHHHHHH
T ss_pred CeEEEEECC-----Cc-------------cccchHHHHHHHHHHHHHhcC----CCeEEEEeCCCCCCCchHHHHHHHHH
Confidence 001111111 00 112689999988776542222 58999999999999999999999999
Q ss_pred HHHHHHHHhCCCCCHHHHHHHHHHHHhhhcCCCCChhhHHHhhcCCCCeEEEEEecCCceeeeeccCCCeE--EEEEeCC
Q 003222 656 SMSAIAAAHGLNIHPRDLALLCQKVENHIVGAPCGVMDQMASACGEANKLLAMVCQPAELLGVVEIPSHIR--FWGIDSG 733 (838)
Q Consensus 656 ~~~al~~l~~~~l~~~ela~~a~~~E~~~~G~~~G~mDq~a~~~G~~~~~l~~d~~~~~~~~~v~~~~~~~--~vi~~s~ 733 (838)
++.|++.++|+++++++++++|+++| | +...+.+||. .+...+.... ...++|.++. +++++++
T Consensus 117 ~~~al~~l~g~~ls~~el~~la~~~~----G------~~~~~~~GG~---~~~~~~~~~~-~~~~~~~~~~~~v~i~~~~ 182 (317)
T 2gs8_A 117 LVKACDQLFDTQLDQKALAQKAKFAS----G------SSSRSFFGPV---AAWDKDSGAI-YKVETDLKMAMIMLVLNAA 182 (317)
T ss_dssp HHHHHHHHHTCCCCHHHHHHHHHHHH----G------GGGGGGSCSE---EEECTTTCCE-EECCCCCCEEEEEEECCCS
T ss_pred HHHHHHHHhCCCCCHHHHHHHHHhhc----c------hhHhhhcCCh---heEeeCCCce-eEEEccccccEEEEEEECC
Confidence 99999999999999999999999775 3 2345789983 3332222222 2334454555 4445887
Q ss_pred CCCcCCCCchhhH
Q 003222 734 IRHSVGGADYGSV 746 (838)
Q Consensus 734 ~~~~~~~~~y~~~ 746 (838)
.++..++++|+.+
T Consensus 183 ~~~~~tt~~~~~~ 195 (317)
T 2gs8_A 183 KKPISSREGMKLC 195 (317)
T ss_dssp SCCSCHHHHHHHH
T ss_pred CcCcccHHHHHHH
Confidence 7776666777643
|
| >1uek_A 4-(cytidine 5'-diphospho)-2C-methyl-D-erythritol kinase; non-mevalonate pathway, GHMP superfamily; 1.70A {Thermus thermophilus} SCOP: d.14.1.5 d.58.26.5 | Back alignment and structure |
|---|
Probab=99.58 E-value=1.3e-14 Score=154.93 Aligned_cols=159 Identities=16% Similarity=0.141 Sum_probs=122.9
Q ss_pred EEEEccccccc----cccccc-cCCCeeeccccccceEEEEEEcCCccchhhhhhhhccCCCCCCCCCeEEEEecccccC
Q 003222 498 FVARAPGRLDV----MGGIAD-YSGSLVLQMPIREACHVALQKISPSKQRLWKHALARHNDKGQGPMPVLQIVSYGSELS 572 (838)
Q Consensus 498 ~~~~APGRv~L----~GeH~D-y~gg~vl~~ai~~~~~v~~~~~~d~~~~l~~~~~~~~~~~~~~~~~~i~i~s~~~~~~ 572 (838)
+.+ ||||||| .|+|.| |++..++.++|+++.++.+.+ + .++ +..
T Consensus 2 i~~-aPakinl~l~v~g~r~dgyh~~~sl~~ai~l~~~v~~~~--~-~~~---------------------i~~------ 50 (275)
T 1uek_A 2 ERL-APAKVNLGLSVRFRREDGYHELHTLFAPFSLADRLVVEP--V-SSG---------------------LHF------ 50 (275)
T ss_dssp EEE-EEEEEEEEEEEEEECTTSSEEEEEEEEEEEEEEEEEEEE--E-SSC---------------------EEE------
T ss_pred cee-ecCeEEEeeeecCcCCCCCceeeEEEEEcCCCCEEEEEE--C-cEE---------------------EEE------
Confidence 345 9999999 699999 999999999999999998876 2 221 111
Q ss_pred CCCCceeccCCccccCCCCcchhhhhcccCCCCCCChhHHHHHHHHHHHHHhCCCCCCCEEEEEEeCCCCCCCCChHHHH
Q 003222 573 NRGPTFDMDLSDFMDEGKPMSYEKAKKYFDTNPSQKWAAYVAGTILVLMTELGVRFEDSISMLVSSAVPEGKGVSSSASV 652 (838)
Q Consensus 573 ~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~~~~~~w~~y~~g~i~~~~~~~g~~~~~g~~i~i~s~iP~g~GLgSSAA~ 652 (838)
+- + + + ..|++..++..+.+..|.. .|++|.+.++||.|+|||||||.
T Consensus 51 --------~~-~-------~------------~---~~n~v~~a~~~~~~~~g~~--~g~~i~i~~~IP~g~GLGSSsa~ 97 (275)
T 1uek_A 51 --------QG-P-------Y------------G---RENLAYRAASLYLEAAGQP--GGVRILLEKRIPEGAGLGGGSSD 97 (275)
T ss_dssp --------ES-T-------T------------G---GGSHHHHHHHHHHHHTTCC--CEEEEEEECCSCSSSSSCHHHHH
T ss_pred --------cC-C-------C------------C---CccHHHHHHHHHHHHhCCC--CCEEEEEecCCCCcCcccHHHHH
Confidence 00 1 0 0 1467888888777666753 69999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHhhhcCCCCChhhHHHhhcCCCCeEEEEEecCCceeeeeccCCCeEEEEEeC
Q 003222 653 EVASMSAIAAAHGLNIHPRDLALLCQKVENHIVGAPCGVMDQMASACGEANKLLAMVCQPAELLGVVEIPSHIRFWGIDS 732 (838)
Q Consensus 653 ~va~~~al~~l~~~~l~~~ela~~a~~~E~~~~G~~~G~mDq~a~~~G~~~~~l~~d~~~~~~~~~v~~~~~~~~vi~~s 732 (838)
.+|++.|++.++|.++ +++++|.++| .|..++.+||. .+.... .+...+++ ++++.++++++
T Consensus 98 a~a~l~al~~l~~~~l---~l~~la~~~g----------~dv~~~~~Gg~---~~~~g~-g~~~~~l~-~~~~~~vl~~p 159 (275)
T 1uek_A 98 AAQVLLALQALYPAEV---DLFALARTLG----------ADVPFFLLGRG---AEARGV-GERLKPLA-LPPVPAVVFFP 159 (275)
T ss_dssp HHHHHHHHHHHSCSCC---CHHHHHHHHC----------TTHHHHHHCSE---EEEETT-TTEEEEEC-CCCEEEEEEEC
T ss_pred HHHHHHHHHHHcCCCh---HHHHHHHHhC----------CChHHHhcCCe---EEEEcc-CceeEEcc-CCCcEEEEEeC
Confidence 9999999999999988 8999999876 28899999994 333323 33346777 56889999999
Q ss_pred CCCCcC
Q 003222 733 GIRHSV 738 (838)
Q Consensus 733 ~~~~~~ 738 (838)
++..++
T Consensus 160 ~~~~sT 165 (275)
T 1uek_A 160 GLRVPT 165 (275)
T ss_dssp CCCCCH
T ss_pred CCCCch
Confidence 876553
|
| >3pyf_A 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; transferase; HET: ANP; 1.70A {Mycobacterium tuberculosis} PDB: 3pyd_A* 3pye_A* 3pyg_A* 4ed4_A* 4dxl_A* 4emd_A* | Back alignment and structure |
|---|
Probab=99.51 E-value=3e-13 Score=146.29 Aligned_cols=172 Identities=15% Similarity=0.185 Sum_probs=131.4
Q ss_pred eEEEEccccccc----cccccc-cCCCeeeccccccceEEEEEEcCCccchhhhhhhhccCCCCCCCCCeEEEEeccccc
Q 003222 497 IFVARAPGRLDV----MGGIAD-YSGSLVLQMPIREACHVALQKISPSKQRLWKHALARHNDKGQGPMPVLQIVSYGSEL 571 (838)
Q Consensus 497 ~~~~~APGRv~L----~GeH~D-y~gg~vl~~ai~~~~~v~~~~~~d~~~~l~~~~~~~~~~~~~~~~~~i~i~s~~~~~ 571 (838)
.+.++||+++|| .|.+.| |+.--.+-++|+++-.+.+.+.++. .+.+...
T Consensus 5 ~~~~~apAKiNL~L~v~~~r~DGyh~l~s~~~al~l~D~l~~~~~~~~---------------------~i~~~g~---- 59 (306)
T 3pyf_A 5 SVTVRVPGKVNLYLAVGDRREDGYHELTTVFHAVSLVDEVTVRNADVL---------------------SLELVGE---- 59 (306)
T ss_dssp CEEEEEEEEEEEEEEECCCCTTSCCCEEEEEEEEEEEEEEEEEECSSC---------------------EEEEEST----
T ss_pred cEEEEecceEEeecccCCcCCCCCcchheeEEEcccCCEEEEEECCCC---------------------EEEEeCC----
Confidence 357899999999 999998 8887777789999988888775432 1222210
Q ss_pred CCCCCceeccCCccccCCCCcchhhhhcccCCCCCCChhHHHHHHHHHHHHHhCCCCCCCEEEEEEeCCCCCCCCChHHH
Q 003222 572 SNRGPTFDMDLSDFMDEGKPMSYEKAKKYFDTNPSQKWAAYVAGTILVLMTELGVRFEDSISMLVSSAVPEGKGVSSSAS 651 (838)
Q Consensus 572 ~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~~~~~~w~~y~~g~i~~~~~~~g~~~~~g~~i~i~s~iP~g~GLgSSAA 651 (838)
. ...+ + .+..|++..++..+.+..|.. .|++|.+.++||.|+|||||||
T Consensus 60 ------~---~~~~-------------------p-~~~~Nlv~~A~~~l~~~~g~~--~~~~i~i~~~iP~~~GLGsssa 108 (306)
T 3pyf_A 60 ------G---ADQL-------------------P-TDERNLAWQAAELMAEHVGRA--PDVSIMIDKSIPVAGGMAGGSA 108 (306)
T ss_dssp ------T---GGGS-------------------C-CSTTSHHHHHHHHHHHHTTCC--CCEEEEEEECSCTTSSSCHHHH
T ss_pred ------C---ccCC-------------------C-CCCccHHHHHHHHHHHHhCCC--CCeEEEEecCCCCCCCcchHHH
Confidence 0 0010 0 012577777777777777764 5999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhhhcCCCCChhhHHHhhcCCCCeEEEEEecCCceeeeeccCCCeEEEEEe
Q 003222 652 VEVASMSAIAAAHGLNIHPRDLALLCQKVENHIVGAPCGVMDQMASACGEANKLLAMVCQPAELLGVVEIPSHIRFWGID 731 (838)
Q Consensus 652 ~~va~~~al~~l~~~~l~~~ela~~a~~~E~~~~G~~~G~mDq~a~~~G~~~~~l~~d~~~~~~~~~v~~~~~~~~vi~~ 731 (838)
..+|++.|++.++|.++++++++++|.++| .|..++++||. .+. ....+...+++.+.++.+++++
T Consensus 109 ~a~a~l~al~~~~~~~l~~~~l~~la~~~~----------~Dv~~~~~Gg~---~~~-~g~ge~~~~l~~~~~~~~vl~~ 174 (306)
T 3pyf_A 109 DAAAVLVAMNSLWELNVPRRDLRMLAARLG----------SDVPFALHGGT---ALG-TGRGEELATVLSRNTFHWVLAF 174 (306)
T ss_dssp HHHHHHHHHHHHTTCCCCHHHHHHHHHHHC----------TTHHHHHHBSE---EEE-CSSSSCCEEECCSSCEEEEEEE
T ss_pred HHHHHHHHHHHHhCCCcCHHHHHHHHHHhC----------CCCceeecCce---EEE-EeeCCeEEEccCCCCcEEEEEE
Confidence 999999999999999999999999999887 38889999993 332 3223334677777789999999
Q ss_pred CCCCCcC
Q 003222 732 SGIRHSV 738 (838)
Q Consensus 732 s~~~~~~ 738 (838)
+++..++
T Consensus 175 P~~~vsT 181 (306)
T 3pyf_A 175 ADSGLLT 181 (306)
T ss_dssp CSSCCCH
T ss_pred CCCCCcH
Confidence 9987654
|
| >3qt5_A Mevalonate diphosphate decarboxylase; GHMP kinase family, lyase; 1.85A {Staphylococcus epidermidis} PDB: 3qt6_A* 3qt7_A* 4dpt_A* 4du7_A* 4dpu_A* 3qt8_A* 4dpx_A 4dpy_A* 4du8_A* 4dpw_A* 2hk2_A 2hk3_A | Back alignment and structure |
|---|
Probab=99.51 E-value=8.1e-14 Score=152.47 Aligned_cols=146 Identities=18% Similarity=0.171 Sum_probs=110.0
Q ss_pred EEEEccccccccccccccCCCeeeccccccceEEEEEEcCCccchhhhhhhhccCCCCCCCCCeEEEEecccccCCCCCc
Q 003222 498 FVARAPGRLDVMGGIADYSGSLVLQMPIREACHVALQKISPSKQRLWKHALARHNDKGQGPMPVLQIVSYGSELSNRGPT 577 (838)
Q Consensus 498 ~~~~APGRv~L~GeH~Dy~gg~vl~~ai~~~~~v~~~~~~d~~~~l~~~~~~~~~~~~~~~~~~i~i~s~~~~~~~~~~~ 577 (838)
..++||+||+|+|+|+||+++.+||+...++..+. .++.+..+ + .+. ++.. ..
T Consensus 10 ~~~~ap~nialiky~gk~~~~~~lP~~dslglal~-~~~~~~~v---------------------~-~~~--~~~~--~~ 62 (332)
T 3qt5_A 10 GKARAHTNIALIKYWGKADETYIIPMNNSLSVTLD-RFYTETKV---------------------T-FDP--DFTE--DC 62 (332)
T ss_dssp EEEEEEEEEEEECCCCEEETTTTEESSCEEEEEEE-EEEEEEEE---------------------E-EET--TCSS--CE
T ss_pred EEEEecCcEEEEeeeeeccCCccccCCCceEEEec-CCCCeeEE---------------------E-EcC--CCCc--cE
Confidence 47899999999999999999999999998887775 22322111 1 010 0000 01
Q ss_pred eeccCCccccCCCCcchhhhhcccCCCCCCChhHHHHHHHHHHHHHhCCCCCCCEEEEEEeCCCCCCCCChHHHHHHHHH
Q 003222 578 FDMDLSDFMDEGKPMSYEKAKKYFDTNPSQKWAAYVAGTILVLMTELGVRFEDSISMLVSSAVPEGKGVSSSASVEVASM 657 (838)
Q Consensus 578 ~~~~l~~~~~~~~p~~~~~~~~~~~~~~~~~w~~y~~g~i~~~~~~~g~~~~~g~~i~i~s~iP~g~GLgSSAA~~va~~ 657 (838)
+.++. .. ...+|.|++..++..+.+..+.. .|++|.+.++||.++|||||||..+|++
T Consensus 63 --~~i~g-----~~-------------~~~~~~n~v~~~~~~~~~~~~~~--~~~~i~~~~~iP~~~GLgSSaa~~~a~~ 120 (332)
T 3qt5_A 63 --LILNG-----NE-------------VNAKEKEKIQNYMNIVRDLAGNR--LHARIESENYVPTAAGLASSASAYAALA 120 (332)
T ss_dssp --EEETT-----EE-------------CCHHHHHHHHHHHHHHHHHHTCC--CEEEEEEEEESCGGGTCCCHHHHHHHHH
T ss_pred --EEECC-----cc-------------CCcchHHHHHHHHHHHHHhcCCC--CCEEEEEecCCCCCCCcchHHHHHHHHH
Confidence 11111 00 11347999999988887777764 6899999999999999999999999999
Q ss_pred HHHHHHhCCCCCHHHHHHHHHHHHhhhcCCCCChhhHHHhhcCCC
Q 003222 658 SAIAAAHGLNIHPRDLALLCQKVENHIVGAPCGVMDQMASACGEA 702 (838)
Q Consensus 658 ~al~~l~~~~l~~~ela~~a~~~E~~~~G~~~G~mDq~a~~~G~~ 702 (838)
.|++.++|+++++.+++++|+++| | |-..+++||.
T Consensus 121 ~a~~~l~~~~l~~~el~~la~~~~--------g--~~~~~~~GG~ 155 (332)
T 3qt5_A 121 AACNEALSLNLSDTDLSRLARRGS--------G--SASRSIFGGF 155 (332)
T ss_dssp HHHHHHHTCCCCHHHHHHHHHHHC--------G--GGGGGGSCSE
T ss_pred HHHHHHhCCCCCHHHHHHHHHHhc--------C--CchhhhcCCe
Confidence 999999999999999999999874 2 4456889994
|
| >2jzc_A UDP-N-acetylglucosamine transferase subunit ALG13; rossmann-like fold, endoplasmic reticulum, glycosyltransferase, structural genomics; NMR {Saccharomyces cerevisiae} PDB: 2ks6_A | Back alignment and structure |
|---|
Probab=99.47 E-value=1.7e-13 Score=140.47 Aligned_cols=150 Identities=16% Similarity=0.099 Sum_probs=103.5
Q ss_pred hCCCCCCcEEEEEcCCCCchhhhH---------HhhCCCC-c-EEEEeCCCCC---C--------------CC-------
Q 003222 217 LGIEDDVKLLILNFGGQPAGWKLK---------EEYLPSG-W-KCLVCGASDS---Q--------------LP------- 261 (838)
Q Consensus 217 l~~~~~~~~Vlvs~Gs~~~~~~ll---------~~l~~~~-~-~~vv~G~~~~---~--------------lp------- 261 (838)
++.++++++|||++||...-.+++ +.+...+ + .++.+|.... . +|
T Consensus 22 ~~~~~~~~~VlVtgGS~~~~n~li~~vl~~~~l~~L~~~~~~~vv~q~G~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~ 101 (224)
T 2jzc_A 22 LEGIIEEKALFVTCGATVPFPKLVSCVLSDEFCQELIQYGFVRLIIQFGRNYSSEFEHLVQERGGQRESQKIPIDQFGCG 101 (224)
T ss_dssp --CCCCSCCEEEECCSCCSCHHHHHHHTSHHHHHHHHTTTCCCEEECCCSSSCCCCCSHHHHHTCEECSCCCSSCTTCTT
T ss_pred cCCCCCCCEEEEEcCCchHHHHHHHHHHHHHHHHHHhcCCCeEEEEEECCCchhhHHHHHHhhhcccccccccccccccc
Confidence 455567889999999985322221 3443444 4 4456786543 1 12
Q ss_pred ------------CCeEECCCCCCHHHHHh-hcCEEEecCChhhHHHHHHcCCcEEEEeCCC--CCChHHHHHHHHHcCcE
Q 003222 262 ------------PNFIKLPKDAYTPDFMA-ASDCMLGKIGYGTVSEALAYKLPFVFVRRDY--FNEEPFLRNMLEFYQGG 326 (838)
Q Consensus 262 ------------~nv~~~~~~~~~pdlLa-~adl~It~gG~~Tv~Eal~~GvP~l~iP~~~--~~EQ~~Na~~l~~~G~g 326 (838)
.++.+++|.+.|+++|+ .||++|||||++|++|++++|+|+|++|.+. ..+|..||+++++.|++
T Consensus 102 ~~~~~~~~~~~~~~v~v~~f~~~m~~~l~~~AdlvIshaGagTv~Eal~~G~P~IvVP~~~~~~~HQ~~nA~~l~~~G~~ 181 (224)
T 2jzc_A 102 DTARQYVLMNGKLKVIGFDFSTKMQSIIRDYSDLVISHAGTGSILDSLRLNKPLIVCVNDSLMDNHQQQIADKFVELGYV 181 (224)
T ss_dssp CSCEEEESTTTSSEEEECCSSSSHHHHHHHHCSCEEESSCHHHHHHHHHTTCCCCEECCSSCCCCHHHHHHHHHHHHSCC
T ss_pred ccccccccccCCceEEEeeccchHHHHHHhcCCEEEECCcHHHHHHHHHhCCCEEEEcCcccccchHHHHHHHHHHCCCE
Confidence 14567899899999999 9999999999999999999999999999753 24699999999999999
Q ss_pred EEEecCCCChhhHHHHHHHHhhCCCCcc-CCCCHHHHHHHHHHHHh
Q 003222 327 VEMIRRDLLTGHWKPYLERAISLKPCYE-GGINGGEVAAHILQETA 371 (838)
Q Consensus 327 ~~l~~~~~~~~~l~~~l~~ll~~~~~~~-~~~~g~~~~a~~i~~~~ 371 (838)
+.++. +.+.++|.++......+. ..+.+....++.|.+.+
T Consensus 182 ~~~~~-----~~L~~~i~~l~~~~~~~~~~~~~~~~~~~~~l~~~~ 222 (224)
T 2jzc_A 182 WSCAP-----TETGLIAGLRASQTEKLKPFPVSHNPSFERLLVETI 222 (224)
T ss_dssp CEECS-----CTTTHHHHHHHHTTCCCCSCCCSSSCTHHHHHHHHC
T ss_pred EEcCH-----HHHHHHHHHHHhhhhccCCCCCCCHHHHHHHHHHHh
Confidence 87743 455677777733222222 12324456666666653
|
| >1fi4_A Mevalonate 5-diphosphate decarboxylase; mixed alpha/beta structure, ATP binding, CHOL biosynthesis, structural genomics, PSI; 2.27A {Saccharomyces cerevisiae} SCOP: d.14.1.5 d.58.26.2 | Back alignment and structure |
|---|
Probab=99.28 E-value=3.6e-11 Score=135.39 Aligned_cols=124 Identities=14% Similarity=0.076 Sum_probs=87.3
Q ss_pred hHHHHHHHHHHHHHhCC------CC----CCCEEEEEEeCCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHH
Q 003222 610 AAYVAGTILVLMTELGV------RF----EDSISMLVSSAVPEGKGVSSSASVEVASMSAIAAAHGLNIHPRDLALLCQK 679 (838)
Q Consensus 610 ~~y~~g~i~~~~~~~g~------~~----~~g~~i~i~s~iP~g~GLgSSAA~~va~~~al~~l~~~~l~~~ela~~a~~ 679 (838)
.+++..++..+.+..+. .+ ..|++|.+.++||.++|||||||..+|++.|++.++|+++++++|+++|..
T Consensus 92 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~I~i~~~IP~~aGLGSSAA~aaA~l~Aln~l~gl~Ls~~eLa~lA~~ 171 (416)
T 1fi4_A 92 NERTQNCLRDLRQLRKEMESKDASLPTLSQWKLHIVSENNFPTAAGLASSAAGFAALVSAIAKLYQLPQSTSEISRIARK 171 (416)
T ss_dssp SSSHHHHHHHHHHHHHHHHTTCTTSCCGGGSCEEEEEEECCCTTSCCCHHHHHHHHHHHHHHHHTTCCSCHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHhccccccccccccccCCcEEEEEecCCcCcCCccHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHhc
Confidence 45677777666544443 00 258999999999999999999999999999999999999999999999987
Q ss_pred HHhhhcCCCCChhhHHHhhcCCCCeEEEEEecC-----Cceeeeecc---CCCeE--EEEEeCCCCCcCCCCchhhH
Q 003222 680 VENHIVGAPCGVMDQMASACGEANKLLAMVCQP-----AELLGVVEI---PSHIR--FWGIDSGIRHSVGGADYGSV 746 (838)
Q Consensus 680 ~E~~~~G~~~G~mDq~a~~~G~~~~~l~~d~~~-----~~~~~~v~~---~~~~~--~vi~~s~~~~~~~~~~y~~~ 746 (838)
.+ | +...+++||. +..+... ..+..+++. .+++. +++.+++.++...++.|+.+
T Consensus 172 g~----G------s~~~sl~GG~---v~~~~G~~~~~~~~~~~~l~~~~~~p~l~~vvlv~~~~~~~~sst~~~~~~ 235 (416)
T 1fi4_A 172 GS----G------SACRSLFGGY---VAWEMGKAEDGHDSMAVQIADSSDWPQMKACVLVVSDIKKDVSSTQGMQLT 235 (416)
T ss_dssp HH----G------GGGGGGSSSE---EEEECCSCTTCTTCEEEEEECGGGSTTEEEEEEEECCCSCCCCHHHHHHHH
T ss_pred cC----C------chheEeeCCc---EEEecCCcCCCCCceeEEecCccCCcccEEEEEEECCCCCCcCCHHHHHHH
Confidence 65 2 3456889994 3333221 112234432 13554 56678877766655666654
|
| >3okp_A GDP-mannose-dependent alpha-(1-6)-phosphatidylino monomannoside mannosyltransferase...; GT-B fold, alpha-mannosyltransferase; HET: GDD; 2.00A {Corynebacterium glutamicum} PDB: 3okc_A* 3oka_A* | Back alignment and structure |
|---|
Probab=99.27 E-value=8.4e-11 Score=130.35 Aligned_cols=295 Identities=13% Similarity=0.058 Sum_probs=161.3
Q ss_pred CceEEEEEeecCC---CcccHHHHHHHHHHHHHCCCeEEEEeCCCCccc-ccccCCCceeeeeeccCCCcccccccccCh
Q 003222 13 SKHLVFAYYVTGH---GFGHATRVVEVVRNLISAGHDVHVVTGAPDFVF-TSEIQSPRLFIRKVLLDCGAVQADALTVDR 88 (838)
Q Consensus 13 m~~~~Il~~v~g~---G~GHv~r~laLA~~L~~~Gh~V~~v~~~~~~~~-~~~i~~~~~~~~~~~~~~g~~~~~~~~~~~ 88 (838)
|++|+|++++... ..|+...+..++++| +||+|++++....... .......++.+.... .. .....
T Consensus 2 ~~~mkIl~v~~~~~p~~gG~~~~~~~l~~~L--~g~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~--~~------~~~~~ 71 (394)
T 3okp_A 2 SASRKTLVVTNDFPPRIGGIQSYLRDFIATQ--DPESIVVFASTQNAEEAHAYDKTLDYEVIRWP--RS------VMLPT 71 (394)
T ss_dssp --CCCEEEEESCCTTSCSHHHHHHHHHHTTS--CGGGEEEEEECSSHHHHHHHHTTCSSEEEEES--SS------SCCSC
T ss_pred CCCceEEEEeCccCCccchHHHHHHHHHHHh--cCCeEEEEECCCCccchhhhccccceEEEEcc--cc------ccccc
Confidence 4557777776522 368888899999999 6999999987643211 111011122222210 00 00000
Q ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHhcCCCcEEEECC-Cc--hHHHHHHHhCCcEEEEecCchhHHHHhhhhhcccchH
Q 003222 89 LASLEKYSETAVAPRKSILKDEVEWLNSIKADLVVSDV-VP--VACRAAADAGIRSVCVTNFSWDFIYAEYVMAAGHHHR 165 (838)
Q Consensus 89 ~~~l~~~~~~~~~~~~~~l~~~~~~L~~~kPDlVVsD~-~~--~~~~aA~~lgIP~V~is~~~~~~i~~~~~~~~~~~~~ 165 (838)
........+++++.+||+|+... .+ ....+++..++|.+.++-.+....+.. .. ...
T Consensus 72 ---------------~~~~~~l~~~~~~~~~Dvv~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~-~~----~~~ 131 (394)
T 3okp_A 72 ---------------PTTAHAMAEIIREREIDNVWFGAAAPLALMAGTAKQAGASKVIASTHGHEVGWSM-LP----GSR 131 (394)
T ss_dssp ---------------HHHHHHHHHHHHHTTCSEEEESSCTTGGGGHHHHHHTTCSEEEEECCSTHHHHTT-SH----HHH
T ss_pred ---------------hhhHHHHHHHHHhcCCCEEEECCcchHHHHHHHHHhcCCCcEEEEeccchhhhhh-cc----hhh
Confidence 01223345678899999999864 22 334456788998544332221100000 00 000
Q ss_pred HHHHHHHhhccccceEEecCCC--------CCCCCCCceeecCcccccC----CcChHHHHHHhCCCCCCcEEEEEcCCC
Q 003222 166 SIVWQIAEDYSHCEFLIRLPGY--------CPMPAFRDVIDVPLVVRRL----HKSRKEVRKELGIEDDVKLLILNFGGQ 233 (838)
Q Consensus 166 ~i~~~l~~~y~~~d~ll~~~~~--------~~~p~~~~v~~ip~~~~~~----~~~~~~~r~~l~~~~~~~~Vlvs~Gs~ 233 (838)
.+ ....+..++.++..... ...+....+++.|+..... ...+.++++.++++++. .++++.|+.
T Consensus 132 ~~---~~~~~~~~d~ii~~s~~~~~~~~~~~~~~~~~~vi~ngv~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~G~~ 207 (394)
T 3okp_A 132 QS---LRKIGTEVDVLTYISQYTLRRFKSAFGSHPTFEHLPSGVDVKRFTPATPEDKSATRKKLGFTDTT-PVIACNSRL 207 (394)
T ss_dssp HH---HHHHHHHCSEEEESCHHHHHHHHHHHCSSSEEEECCCCBCTTTSCCCCHHHHHHHHHHTTCCTTC-CEEEEESCS
T ss_pred HH---HHHHHHhCCEEEEcCHHHHHHHHHhcCCCCCeEEecCCcCHHHcCCCCchhhHHHHHhcCCCcCc-eEEEEEecc
Confidence 00 01111222222211000 0000101122222222111 11245778889886444 456777776
Q ss_pred Cch---hhhHHh---hC--CCCcEEEEeCCCCCC---------CCCCeEECCCC--CCHHHHHhhcCEEEe---------
Q 003222 234 PAG---WKLKEE---YL--PSGWKCLVCGASDSQ---------LPPNFIKLPKD--AYTPDFMAASDCMLG--------- 285 (838)
Q Consensus 234 ~~~---~~ll~~---l~--~~~~~~vv~G~~~~~---------lp~nv~~~~~~--~~~pdlLa~adl~It--------- 285 (838)
... ..+++. +. .+++.++++|..... +.+||++++++ +.++++|+.||++|.
T Consensus 208 ~~~Kg~~~li~a~~~l~~~~~~~~l~i~G~g~~~~~l~~~~~~~~~~v~~~g~~~~~~~~~~~~~ad~~v~ps~~~~~~~ 287 (394)
T 3okp_A 208 VPRKGQDSLIKAMPQVIAARPDAQLLIVGSGRYESTLRRLATDVSQNVKFLGRLEYQDMINTLAAADIFAMPARTRGGGL 287 (394)
T ss_dssp CGGGCHHHHHHHHHHHHHHSTTCEEEEECCCTTHHHHHHHTGGGGGGEEEEESCCHHHHHHHHHHCSEEEECCCCBGGGT
T ss_pred ccccCHHHHHHHHHHHHhhCCCeEEEEEcCchHHHHHHHHHhcccCeEEEcCCCCHHHHHHHHHhCCEEEecCccccccc
Confidence 542 223332 22 257888888875421 35789999988 467799999999997
Q ss_pred --cCChhhHHHHHHcCCcEEEEeCCCCCChHHHHHHHHHcCcEEEEecCCCChhhHHHHHHHHhhCC
Q 003222 286 --KIGYGTVSEALAYKLPFVFVRRDYFNEEPFLRNMLEFYQGGVEMIRRDLLTGHWKPYLERAISLK 350 (838)
Q Consensus 286 --~gG~~Tv~Eal~~GvP~l~iP~~~~~EQ~~Na~~l~~~G~g~~l~~~~~~~~~l~~~l~~ll~~~ 350 (838)
-+..+++.||+++|+|+|+.+.....|. +.. |.|..++..+ ++.+.++|.++++++
T Consensus 288 ~~e~~~~~~~Ea~a~G~PvI~~~~~~~~e~------i~~-~~g~~~~~~d--~~~l~~~i~~l~~~~ 345 (394)
T 3okp_A 288 DVEGLGIVYLEAQACGVPVIAGTSGGAPET------VTP-ATGLVVEGSD--VDKLSELLIELLDDP 345 (394)
T ss_dssp BCCSSCHHHHHHHHTTCCEEECSSTTGGGG------CCT-TTEEECCTTC--HHHHHHHHHHHHTCH
T ss_pred cccccCcHHHHHHHcCCCEEEeCCCChHHH------Hhc-CCceEeCCCC--HHHHHHHHHHHHhCH
Confidence 4555789999999999999875444332 333 4788887655 578999999998765
|
| >3c48_A Predicted glycosyltransferases; retaining glycosyltransferase, beta alpha beta, substrate AS catalysis; 2.10A {Corynebacterium glutamicum} PDB: 3c4v_A* 3c4q_A* | Back alignment and structure |
|---|
Probab=99.26 E-value=1.9e-10 Score=129.86 Aligned_cols=130 Identities=17% Similarity=0.140 Sum_probs=90.7
Q ss_pred HHHHHhCCCCCCcEEEEEcCCCCch---hhhHHh---hC---C-CCcEEEEeCC----CCC-C----------CCCCeEE
Q 003222 212 EVRKELGIEDDVKLLILNFGGQPAG---WKLKEE---YL---P-SGWKCLVCGA----SDS-Q----------LPPNFIK 266 (838)
Q Consensus 212 ~~r~~l~~~~~~~~Vlvs~Gs~~~~---~~ll~~---l~---~-~~~~~vv~G~----~~~-~----------lp~nv~~ 266 (838)
.+++.++++.++ .++++.|+.... ..++++ +. + .++.++++|. ... . +.+||++
T Consensus 232 ~~r~~~~~~~~~-~~i~~~G~~~~~Kg~~~li~a~~~l~~~~p~~~~~l~i~G~~~~~g~~~~~l~~~~~~~~l~~~v~~ 310 (438)
T 3c48_A 232 RSRRELGIPLHT-KVVAFVGRLQPFKGPQVLIKAVAALFDRDPDRNLRVIICGGPSGPNATPDTYRHMAEELGVEKRIRF 310 (438)
T ss_dssp HHHHHTTCCSSS-EEEEEESCBSGGGCHHHHHHHHHHHHHHCTTCSEEEEEECCBC------CHHHHHHHHTTCTTTEEE
T ss_pred hhHHhcCCCCCC-cEEEEEeeecccCCHHHHHHHHHHHHhhCCCcceEEEEEeCCCCCCcHHHHHHHHHHHcCCCCcEEE
Confidence 478888886454 466777877643 123332 21 1 2678888887 221 1 4578999
Q ss_pred CCCC--CCHHHHHhhcCEEEecC----ChhhHHHHHHcCCcEEEEeCCCCCChHHHHHHHHHcCcEEEEecCCCChhhHH
Q 003222 267 LPKD--AYTPDFMAASDCMLGKI----GYGTVSEALAYKLPFVFVRRDYFNEEPFLRNMLEFYQGGVEMIRRDLLTGHWK 340 (838)
Q Consensus 267 ~~~~--~~~pdlLa~adl~It~g----G~~Tv~Eal~~GvP~l~iP~~~~~EQ~~Na~~l~~~G~g~~l~~~~~~~~~l~ 340 (838)
++++ +.++++|+.||++|... ..+++.||+++|+|+|+.+.. ...+.++..+.|+.++..+ ++.+.
T Consensus 311 ~g~~~~~~~~~~~~~adv~v~ps~~e~~~~~~~Eama~G~PvI~~~~~------~~~e~i~~~~~g~~~~~~d--~~~la 382 (438)
T 3c48_A 311 LDPRPPSELVAVYRAADIVAVPSFNESFGLVAMEAQASGTPVIAARVG------GLPIAVAEGETGLLVDGHS--PHAWA 382 (438)
T ss_dssp ECCCCHHHHHHHHHHCSEEEECCSCCSSCHHHHHHHHTTCCEEEESCT------THHHHSCBTTTEEEESSCC--HHHHH
T ss_pred cCCCChHHHHHHHHhCCEEEECccccCCchHHHHHHHcCCCEEecCCC------ChhHHhhCCCcEEECCCCC--HHHHH
Confidence 9988 45779999999999743 236899999999999998742 2344566666888887655 57899
Q ss_pred HHHHHHhhCC
Q 003222 341 PYLERAISLK 350 (838)
Q Consensus 341 ~~l~~ll~~~ 350 (838)
++|.++++++
T Consensus 383 ~~i~~l~~~~ 392 (438)
T 3c48_A 383 DALATLLDDD 392 (438)
T ss_dssp HHHHHHHHCH
T ss_pred HHHHHHHcCH
Confidence 9999999865
|
| >2jjm_A Glycosyl transferase, group 1 family protein; anthrax, nucleotide, carbohydrate; 3.10A {Bacillus anthracis} PDB: 3mbo_A* | Back alignment and structure |
|---|
Probab=99.24 E-value=7.7e-10 Score=123.22 Aligned_cols=301 Identities=14% Similarity=0.101 Sum_probs=158.0
Q ss_pred CceEEEEEeecCCCcccHHHHHHHHHHHHHCCCeEEEEeCCCCcccccccCCCceeeeeeccCCCcccccccccChHHHH
Q 003222 13 SKHLVFAYYVTGHGFGHATRVVEVVRNLISAGHDVHVVTGAPDFVFTSEIQSPRLFIRKVLLDCGAVQADALTVDRLASL 92 (838)
Q Consensus 13 m~~~~Il~~v~g~G~GHv~r~laLA~~L~~~Gh~V~~v~~~~~~~~~~~i~~~~~~~~~~~~~~g~~~~~~~~~~~~~~l 92 (838)
|+.-....+.+.. .|.-..+..++++|+++||+|++++......... ..+++.+.... . ........... .
T Consensus 14 ~~~~~~~~~~p~~-GG~~~~~~~la~~L~~~G~~V~v~~~~~~~~~~~--~~~~i~~~~~~--~--~~~~~~~~~~~-~- 84 (394)
T 2jjm_A 14 MKLKIGITCYPSV-GGSGVVGTELGKQLAERGHEIHFITSGLPFRLNK--VYPNIYFHEVT--V--NQYSVFQYPPY-D- 84 (394)
T ss_dssp -CCEEEEECCC---CHHHHHHHHHHHHHHHTTCEEEEECSSCC----C--CCTTEEEECCC--C--C----CCSCCH-H-
T ss_pred heeeeehhcCCCC-CCHHHHHHHHHHHHHhCCCEEEEEeCCCCCcccc--cCCceEEEecc--c--ccccccccccc-c-
Confidence 4433333333443 4778888999999999999999998753221111 11233332210 0 00000000000 0
Q ss_pred HHHHHHhhccHHHHHHHHHHHHhcCCCcEEEECCC-ch--HHHHHH-Hh--CCcEEEEecCchhHHHHhhhhhcccchHH
Q 003222 93 EKYSETAVAPRKSILKDEVEWLNSIKADLVVSDVV-PV--ACRAAA-DA--GIRSVCVTNFSWDFIYAEYVMAAGHHHRS 166 (838)
Q Consensus 93 ~~~~~~~~~~~~~~l~~~~~~L~~~kPDlVVsD~~-~~--~~~aA~-~l--gIP~V~is~~~~~~i~~~~~~~~~~~~~~ 166 (838)
........+++++.+||+|++... +. ...+++ .. ++|.|...+-.+.. ..... .....
T Consensus 85 -----------~~~~~~l~~~l~~~~~Dvv~~~~~~~~~~~~~~~~~~~~~~~p~v~~~h~~~~~----~~~~~-~~~~~ 148 (394)
T 2jjm_A 85 -----------LALASKMAEVAQRENLDILHVHYAIPHAICAYLAKQMIGERIKIVTTLHGTDIT----VLGSD-PSLNN 148 (394)
T ss_dssp -----------HHHHHHHHHHHHHHTCSEEEECSSTTHHHHHHHHHHHTTTCSEEEEECCHHHHH----TTTTC-TTTHH
T ss_pred -----------HHHHHHHHHHHHHcCCCEEEEcchhHHHHHHHHHHHhhcCCCCEEEEEecCccc----ccCCC-HHHHH
Confidence 011233456678899999998752 22 223333 33 59987653211100 00000 00111
Q ss_pred HHHHHHhhccccceEEecCCC--------CCCCCCCceeecCccccc-CCcChHHHHHHhCCCCCCcEEEEEcCCCCch-
Q 003222 167 IVWQIAEDYSHCEFLIRLPGY--------CPMPAFRDVIDVPLVVRR-LHKSRKEVRKELGIEDDVKLLILNFGGQPAG- 236 (838)
Q Consensus 167 i~~~l~~~y~~~d~ll~~~~~--------~~~p~~~~v~~ip~~~~~-~~~~~~~~r~~l~~~~~~~~Vlvs~Gs~~~~- 236 (838)
+.. ..+..++.++..... ...+....+++.|+.... ....+.++++.++++++.+ ++++.|+....
T Consensus 149 ~~~---~~~~~ad~ii~~s~~~~~~~~~~~~~~~~~~vi~ngv~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~G~~~~~K 224 (394)
T 2jjm_A 149 LIR---FGIEQSDVVTAVSHSLINETHELVKPNKDIQTVYNFIDERVYFKRDMTQLKKEYGISESEK-ILIHISNFRKVK 224 (394)
T ss_dssp HHH---HHHHHSSEEEESCHHHHHHHHHHTCCSSCEEECCCCCCTTTCCCCCCHHHHHHTTCC---C-EEEEECCCCGGG
T ss_pred HHH---HHHhhCCEEEECCHHHHHHHHHhhCCcccEEEecCCccHHhcCCcchHHHHHHcCCCCCCe-EEEEeecccccc
Confidence 111 111222322221100 000111122233332221 1123456788888754444 55677776642
Q ss_pred --hhhHHh---hC-CCCcEEEEeCCCCCC-----------CCCCeEECCCCCCHHHHHhhcCEEEe----cCChhhHHHH
Q 003222 237 --WKLKEE---YL-PSGWKCLVCGASDSQ-----------LPPNFIKLPKDAYTPDFMAASDCMLG----KIGYGTVSEA 295 (838)
Q Consensus 237 --~~ll~~---l~-~~~~~~vv~G~~~~~-----------lp~nv~~~~~~~~~pdlLa~adl~It----~gG~~Tv~Ea 295 (838)
..++++ +. ..++.++++|..... +.+||.+.++.+.++++|+.||++|. -+..+++.||
T Consensus 225 g~~~li~a~~~l~~~~~~~l~i~G~g~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~~adv~v~ps~~e~~~~~~~EA 304 (394)
T 2jjm_A 225 RVQDVVQAFAKIVTEVDAKLLLVGDGPEFCTILQLVKNLHIEDRVLFLGKQDNVAELLAMSDLMLLLSEKESFGLVLLEA 304 (394)
T ss_dssp THHHHHHHHHHHHHSSCCEEEEECCCTTHHHHHHHHHTTTCGGGBCCCBSCSCTHHHHHTCSEEEECCSCCSCCHHHHHH
T ss_pred CHHHHHHHHHHHHhhCCCEEEEECCchHHHHHHHHHHHcCCCCeEEEeCchhhHHHHHHhCCEEEeccccCCCchHHHHH
Confidence 223332 21 135788888865421 35789989988889999999999993 4455789999
Q ss_pred HHcCCcEEEEeCCCCCChHHHHHHHHHcCcEEEEecCCCChhhHHHHHHHHhhCC
Q 003222 296 LAYKLPFVFVRRDYFNEEPFLRNMLEFYQGGVEMIRRDLLTGHWKPYLERAISLK 350 (838)
Q Consensus 296 l~~GvP~l~iP~~~~~EQ~~Na~~l~~~G~g~~l~~~~~~~~~l~~~l~~ll~~~ 350 (838)
+++|+|+|+.+.....|. ++..+.|+.++..+ ++.+.++|.++++++
T Consensus 305 ma~G~PvI~~~~~~~~e~------v~~~~~g~~~~~~d--~~~la~~i~~l~~~~ 351 (394)
T 2jjm_A 305 MACGVPCIGTRVGGIPEV------IQHGDTGYLCEVGD--TTGVADQAIQLLKDE 351 (394)
T ss_dssp HHTTCCEEEECCTTSTTT------CCBTTTEEEECTTC--HHHHHHHHHHHHHCH
T ss_pred HhcCCCEEEecCCChHHH------hhcCCceEEeCCCC--HHHHHHHHHHHHcCH
Confidence 999999999986555443 44456788887665 478999999998765
|
| >3fro_A GLGA glycogen synthase; glycosyltransferase family, UDP/ADP-glucose-glycogen synthas rossman folds, transferase; HET: NHF; 2.50A {Pyrococcus abyssi} SCOP: c.87.1.8 PDB: 2bis_A* 3l01_A* | Back alignment and structure |
|---|
Probab=99.23 E-value=5.5e-10 Score=125.53 Aligned_cols=131 Identities=11% Similarity=0.121 Sum_probs=91.0
Q ss_pred hHHHHHHhCCCCCCcEEEEEcCCCC-ch---hhhHH---hhCC----CCcEEEEeCCCCCC-----------CCCCeEEC
Q 003222 210 RKEVRKELGIEDDVKLLILNFGGQP-AG---WKLKE---EYLP----SGWKCLVCGASDSQ-----------LPPNFIKL 267 (838)
Q Consensus 210 ~~~~r~~l~~~~~~~~Vlvs~Gs~~-~~---~~ll~---~l~~----~~~~~vv~G~~~~~-----------lp~nv~~~ 267 (838)
+.++++.++++++ .++++.|+.. .. ..+++ .+.. +++.++++|..... ++.++.+.
T Consensus 239 ~~~~~~~~~~~~~--~~i~~~G~~~~~~Kg~~~li~a~~~l~~~~~~~~~~l~i~G~g~~~~~~~l~~~~~~~~~~~~~~ 316 (439)
T 3fro_A 239 KKSLLSKFGMDEG--VTFMFIGRFDRGQKGVDVLLKAIEILSSKKEFQEMRFIIIGKGDPELEGWARSLEEKHGNVKVIT 316 (439)
T ss_dssp HHHHHHHHTCCSC--EEEEEECCSSCTTBCHHHHHHHHHHHHTSGGGGGEEEEEECCCCHHHHHHHHHHHHHCTTEEEEC
T ss_pred HHHHHHHcCCCCC--cEEEEEcccccccccHHHHHHHHHHHHhcccCCCeEEEEEcCCChhHHHHHHHHHhhcCCEEEEc
Confidence 4577888998644 6778888877 42 22333 2333 56788888876521 45445567
Q ss_pred CCCC--CHHHHHhhcCEEEec----CChhhHHHHHHcCCcEEEEeCCCCCChHHHHHHHHHcCcEEEEecCCCChhhHHH
Q 003222 268 PKDA--YTPDFMAASDCMLGK----IGYGTVSEALAYKLPFVFVRRDYFNEEPFLRNMLEFYQGGVEMIRRDLLTGHWKP 341 (838)
Q Consensus 268 ~~~~--~~pdlLa~adl~It~----gG~~Tv~Eal~~GvP~l~iP~~~~~EQ~~Na~~l~~~G~g~~l~~~~~~~~~l~~ 341 (838)
++.+ .++++|+.||++|.- +-.+++.||+++|+|+|+.+.. ...+.++ .|.|..++..+ ++.+.+
T Consensus 317 g~~~~~~~~~~~~~adv~v~ps~~e~~~~~~~EAma~G~Pvi~s~~~------~~~e~~~-~~~g~~~~~~d--~~~la~ 387 (439)
T 3fro_A 317 EMLSREFVRELYGSVDFVIIPSYFEPFGLVALEAMCLGAIPIASAVG------GLRDIIT-NETGILVKAGD--PGELAN 387 (439)
T ss_dssp SCCCHHHHHHHHTTCSEEEECBSCCSSCHHHHHHHHTTCEEEEESST------HHHHHCC-TTTCEEECTTC--HHHHHH
T ss_pred CCCCHHHHHHHHHHCCEEEeCCCCCCccHHHHHHHHCCCCeEEcCCC------CcceeEE-cCceEEeCCCC--HHHHHH
Confidence 7654 366899999999953 2336899999999999998632 2334443 46898888766 578999
Q ss_pred HHHHHhh-CCC
Q 003222 342 YLERAIS-LKP 351 (838)
Q Consensus 342 ~l~~ll~-~~~ 351 (838)
+|.++++ ++.
T Consensus 388 ~i~~ll~~~~~ 398 (439)
T 3fro_A 388 AILKALELSRS 398 (439)
T ss_dssp HHHHHHHHTTT
T ss_pred HHHHHHhcCHH
Confidence 9999998 553
|
| >3dzc_A UDP-N-acetylglucosamine 2-epimerase; structural genomics, in diseases, isomerase, center for structural genomics of INFE diseases, csgid; 2.35A {Vibrio cholerae} | Back alignment and structure |
|---|
Probab=99.20 E-value=2.4e-10 Score=128.28 Aligned_cols=148 Identities=14% Similarity=0.096 Sum_probs=96.7
Q ss_pred HHHHHHhC-CCCCCcEEEEEc---CCCCch-hhhHHh---hC--CCCcEEEEe-CCCCC---------CCCCCeEECCCC
Q 003222 211 KEVRKELG-IEDDVKLLILNF---GGQPAG-WKLKEE---YL--PSGWKCLVC-GASDS---------QLPPNFIKLPKD 270 (838)
Q Consensus 211 ~~~r~~l~-~~~~~~~Vlvs~---Gs~~~~-~~ll~~---l~--~~~~~~vv~-G~~~~---------~lp~nv~~~~~~ 270 (838)
+++++.++ +++++++|++++ |+.+.+ ..++++ +. .+++.+++. |.++. ...+||+++++.
T Consensus 217 ~~~r~~lg~l~~~~~~vlv~~hR~~~~~~~~~~ll~A~~~l~~~~~~~~~v~~~g~~~~~~~~l~~~~~~~~~v~~~~~l 296 (396)
T 3dzc_A 217 ATLESQFPMLDASKKLILVTGHRRESFGGGFERICQALITTAEQHPECQILYPVHLNPNVREPVNKLLKGVSNIVLIEPQ 296 (396)
T ss_dssp HHHHHTCTTCCTTSEEEEEECSCBCCCTTHHHHHHHHHHHHHHHCTTEEEEEECCBCHHHHHHHHHHTTTCTTEEEECCC
T ss_pred HHHHHHhCccCCCCCEEEEEECCcccchhHHHHHHHHHHHHHHhCCCceEEEEeCCChHHHHHHHHHHcCCCCEEEeCCC
Confidence 56778888 466778888887 333333 233333 22 246666654 64421 124689887766
Q ss_pred C--CHHHHHhhcCEEEecCChhhHHHHHHcCCcEEEEeCCCCCChHHHHHHHHHcCcEEEEecCCCChhhHHHHHHHHhh
Q 003222 271 A--YTPDFMAASDCMLGKIGYGTVSEALAYKLPFVFVRRDYFNEEPFLRNMLEFYQGGVEMIRRDLLTGHWKPYLERAIS 348 (838)
Q Consensus 271 ~--~~pdlLa~adl~It~gG~~Tv~Eal~~GvP~l~iP~~~~~EQ~~Na~~l~~~G~g~~l~~~~~~~~~l~~~l~~ll~ 348 (838)
. .++.+|+.||+||+.+| +.+.||+++|+|+|+++ ..++.+ .+.+.|.++.+.. +++.+.+++.++++
T Consensus 297 g~~~~~~l~~~ad~vv~~SG-g~~~EA~a~G~PvV~~~--~~~~~~----e~v~~G~~~lv~~---d~~~l~~ai~~ll~ 366 (396)
T 3dzc_A 297 QYLPFVYLMDRAHIILTDSG-GIQEEAPSLGKPVLVMR--ETTERP----EAVAAGTVKLVGT---NQQQICDALSLLLT 366 (396)
T ss_dssp CHHHHHHHHHHCSEEEESCS-GGGTTGGGGTCCEEECC--SSCSCH----HHHHHTSEEECTT---CHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhcCEEEECCc-cHHHHHHHcCCCEEEcc--CCCcch----HHHHcCceEEcCC---CHHHHHHHHHHHHc
Confidence 3 46699999999999998 55689999999999975 344442 2456788866543 36788999999997
Q ss_pred CCCCcc---------CCCCHHHHHHHHHH
Q 003222 349 LKPCYE---------GGINGGEVAAHILQ 368 (838)
Q Consensus 349 ~~~~~~---------~~~~g~~~~a~~i~ 368 (838)
++..+. ..++.++++++.|.
T Consensus 367 d~~~~~~m~~~~~~~~~~~aa~ri~~~l~ 395 (396)
T 3dzc_A 367 DPQAYQAMSQAHNPYGDGKACQRIADILA 395 (396)
T ss_dssp CHHHHHHHHTSCCTTCCSCHHHHHHHHHH
T ss_pred CHHHHHHHhhccCCCcCChHHHHHHHHHh
Confidence 653211 35566666666553
|
| >3ot5_A UDP-N-acetylglucosamine 2-epimerase; structural genomics, center for structural genomics of infec diseases, csgid, alpha beta; HET: PGE; 2.20A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.19 E-value=3.8e-10 Score=126.92 Aligned_cols=148 Identities=11% Similarity=-0.014 Sum_probs=98.5
Q ss_pred HHHHHhCCCCCCcEEEEEcCCC---Cch-hhhHHh---hC--CCCcEEEEe-CCCCC---------CCCCCeEECCCCC-
Q 003222 212 EVRKELGIEDDVKLLILNFGGQ---PAG-WKLKEE---YL--PSGWKCLVC-GASDS---------QLPPNFIKLPKDA- 271 (838)
Q Consensus 212 ~~r~~l~~~~~~~~Vlvs~Gs~---~~~-~~ll~~---l~--~~~~~~vv~-G~~~~---------~lp~nv~~~~~~~- 271 (838)
+.++.+ ++++++++++|.. +.+ ..++++ +. .+++.+++. |+++. ...+||+++++..
T Consensus 216 ~~~~~l---~~~~~vlv~~~r~~~~~~~l~~ll~a~~~l~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~~v~l~~~l~~ 292 (403)
T 3ot5_A 216 PILENL---GDNRLILMTAHRRENLGEPMQGMFEAVREIVESREDTELVYPMHLNPAVREKAMAILGGHERIHLIEPLDA 292 (403)
T ss_dssp HHHHSC---TTCEEEEECCCCHHHHTTHHHHHHHHHHHHHHHCTTEEEEEECCSCHHHHHHHHHHHTTCTTEEEECCCCH
T ss_pred HHHHhc---cCCCEEEEEeCcccccCcHHHHHHHHHHHHHHhCCCceEEEecCCCHHHHHHHHHHhCCCCCEEEeCCCCH
Confidence 455554 3567888876632 222 233332 22 246666654 54421 0246899888775
Q ss_pred -CHHHHHhhcCEEEecCChhhHHHHHHcCCcEEEEeCCCCCChHHHHHHHHHcCcEEEEecCCCChhhHHHHHHHHhhCC
Q 003222 272 -YTPDFMAASDCMLGKIGYGTVSEALAYKLPFVFVRRDYFNEEPFLRNMLEFYQGGVEMIRRDLLTGHWKPYLERAISLK 350 (838)
Q Consensus 272 -~~pdlLa~adl~It~gG~~Tv~Eal~~GvP~l~iP~~~~~EQ~~Na~~l~~~G~g~~l~~~~~~~~~l~~~l~~ll~~~ 350 (838)
+++.+|++||++|+.+| +.+.||+++|+|+|+++. ..+++. +.+.|.++.+.. +++.+.+++.++++++
T Consensus 293 ~~~~~l~~~ad~vv~~SG-g~~~EA~a~g~PvV~~~~--~~~~~e----~v~~g~~~lv~~---d~~~l~~ai~~ll~~~ 362 (403)
T 3ot5_A 293 IDFHNFLRKSYLVFTDSG-GVQEEAPGMGVPVLVLRD--TTERPE----GIEAGTLKLIGT---NKENLIKEALDLLDNK 362 (403)
T ss_dssp HHHHHHHHHEEEEEECCH-HHHHHGGGTTCCEEECCS--SCSCHH----HHHHTSEEECCS---CHHHHHHHHHHHHHCH
T ss_pred HHHHHHHHhcCEEEECCc-cHHHHHHHhCCCEEEecC--CCcchh----heeCCcEEEcCC---CHHHHHHHHHHHHcCH
Confidence 57799999999999987 334799999999999963 344433 356788877753 4678889999998765
Q ss_pred CCc---------cCCCCHHHHHHHHHHHHhc
Q 003222 351 PCY---------EGGINGGEVAAHILQETAI 372 (838)
Q Consensus 351 ~~~---------~~~~~g~~~~a~~i~~~~~ 372 (838)
..+ -..++.++++++.|.+++.
T Consensus 363 ~~~~~m~~~~~~~g~~~aa~rI~~~l~~~l~ 393 (403)
T 3ot5_A 363 ESHDKMAQAANPYGDGFAANRILAAIKSHFE 393 (403)
T ss_dssp HHHHHHHHSCCTTCCSCHHHHHHHHHHHHHT
T ss_pred HHHHHHHhhcCcccCCcHHHHHHHHHHHHhC
Confidence 321 1467888889888888764
|
| >2iw1_A Lipopolysaccharide core biosynthesis protein RFAG; transferase, lipopolysaccharide biosynthesis, family GT-4, glycosyltransferase, LPS; HET: U2F; 1.5A {Escherichia coli} SCOP: c.87.1.8 PDB: 2iv7_A* | Back alignment and structure |
|---|
Probab=99.18 E-value=1.9e-09 Score=118.63 Aligned_cols=132 Identities=17% Similarity=0.185 Sum_probs=96.6
Q ss_pred hHHHHHHhCCCCCCcEEEEEcCCCCch---hhhHHhh---C---CCCcEEEEeCCCCCC----------CCCCeEECCCC
Q 003222 210 RKEVRKELGIEDDVKLLILNFGGQPAG---WKLKEEY---L---PSGWKCLVCGASDSQ----------LPPNFIKLPKD 270 (838)
Q Consensus 210 ~~~~r~~l~~~~~~~~Vlvs~Gs~~~~---~~ll~~l---~---~~~~~~vv~G~~~~~----------lp~nv~~~~~~ 270 (838)
++++++.++++++ +.++++.|+.... ..+++++ . .+++.++++|..... +.+||+++++.
T Consensus 183 ~~~~~~~~~~~~~-~~~i~~~G~~~~~K~~~~li~a~~~l~~~~~~~~~l~i~G~g~~~~~~~~~~~~~~~~~v~~~g~~ 261 (374)
T 2iw1_A 183 REIYRQKNGIKEQ-QNLLLQVGSDFGRKGVDRSIEALASLPESLRHNTLLFVVGQDKPRKFEALAEKLGVRSNVHFFSGR 261 (374)
T ss_dssp HHHHHHHTTCCTT-CEEEEEECSCTTTTTHHHHHHHHHTSCHHHHHTEEEEEESSSCCHHHHHHHHHHTCGGGEEEESCC
T ss_pred HHHHHHHhCCCCC-CeEEEEeccchhhcCHHHHHHHHHHhHhccCCceEEEEEcCCCHHHHHHHHHHcCCCCcEEECCCc
Confidence 4578888988644 4566777776542 2333332 1 136788888875431 35789999998
Q ss_pred CCHHHHHhhcCEEEe----cCChhhHHHHHHcCCcEEEEeCCCCCChHHHHHHHHHcCcEEEEe-cCCCChhhHHHHHHH
Q 003222 271 AYTPDFMAASDCMLG----KIGYGTVSEALAYKLPFVFVRRDYFNEEPFLRNMLEFYQGGVEMI-RRDLLTGHWKPYLER 345 (838)
Q Consensus 271 ~~~pdlLa~adl~It----~gG~~Tv~Eal~~GvP~l~iP~~~~~EQ~~Na~~l~~~G~g~~l~-~~~~~~~~l~~~l~~ 345 (838)
+.++++|+.||++|. -+..+++.||+++|+|+|+.+.... .+.++..+.|..+. ..+ .+.+.++|.+
T Consensus 262 ~~~~~~~~~ad~~v~ps~~e~~~~~~~Ea~a~G~Pvi~~~~~~~------~e~i~~~~~g~~~~~~~~--~~~l~~~i~~ 333 (374)
T 2iw1_A 262 NDVSELMAAADLLLHPAYQEAAGIVLLEAITAGLPVLTTAVCGY------AHYIADANCGTVIAEPFS--QEQLNEVLRK 333 (374)
T ss_dssp SCHHHHHHHCSEEEECCSCCSSCHHHHHHHHHTCCEEEETTSTT------THHHHHHTCEEEECSSCC--HHHHHHHHHH
T ss_pred ccHHHHHHhcCEEEeccccCCcccHHHHHHHCCCCEEEecCCCc------hhhhccCCceEEeCCCCC--HHHHHHHHHH
Confidence 889999999999996 3455789999999999999875433 34577788898887 444 5789999999
Q ss_pred HhhCC
Q 003222 346 AISLK 350 (838)
Q Consensus 346 ll~~~ 350 (838)
+++++
T Consensus 334 l~~~~ 338 (374)
T 2iw1_A 334 ALTQS 338 (374)
T ss_dssp HHHCH
T ss_pred HHcCh
Confidence 99765
|
| >2x6q_A Trehalose-synthase TRET; biosynthetic protein; 2.20A {Pyrococcus horikoshii} PDB: 2x6r_A 2xa1_A 2xa2_A* 2xa9_A* 2xmp_A* | Back alignment and structure |
|---|
Probab=99.15 E-value=1.3e-09 Score=122.35 Aligned_cols=300 Identities=13% Similarity=0.025 Sum_probs=163.7
Q ss_pred CCCceEEEEEeecCCC-cccHHHHHHHHHHHHHCCCeEEEEeCCCCcccccccCCCceeeeeeccCCCcccccccccChH
Q 003222 11 ASSKHLVFAYYVTGHG-FGHATRVVEVVRNLISAGHDVHVVTGAPDFVFTSEIQSPRLFIRKVLLDCGAVQADALTVDRL 89 (838)
Q Consensus 11 ~~m~~~~Il~~v~g~G-~GHv~r~laLA~~L~~~Gh~V~~v~~~~~~~~~~~i~~~~~~~~~~~~~~g~~~~~~~~~~~~ 89 (838)
+.|++|+|+++++... .|+-..+..++++|.++||+|++++......+..... . +... . .+. .......
T Consensus 36 ~~~~~mkIl~v~~~~~~GG~~~~~~~l~~~L~~~G~~v~v~~~~~~~~~~~~~~--~--~~~~-~-~~~---~~~~~~~- 105 (416)
T 2x6q_A 36 EKLKGRSFVHVNSTSFGGGVAEILHSLVPLLRSIGIEARWFVIEGPTEFFNVTK--T--FHNA-L-QGN---ESLKLTE- 105 (416)
T ss_dssp HTTTTCEEEEEESCSSSSTHHHHHHHHHHHHHHTTCEEEEEECCCCHHHHHHHH--H--HHHH-H-TTC---CSCCCCH-
T ss_pred hhhhccEEEEEeCCCCCCCHHHHHHHHHHHHHhCCCeEEEEEccCCcchhhhhc--c--ccee-e-ccc---ccccccH-
Confidence 4578899988887654 5777888899999999999999887643211100000 0 0000 0 000 0001111
Q ss_pred HHHHHHHHHhhccHHHHHHHHHHHHhcCCCcEEEECCCchHHHHH-HHhCCcEEEEecCchhHHHHhhhhhcccchHHHH
Q 003222 90 ASLEKYSETAVAPRKSILKDEVEWLNSIKADLVVSDVVPVACRAA-ADAGIRSVCVTNFSWDFIYAEYVMAAGHHHRSIV 168 (838)
Q Consensus 90 ~~l~~~~~~~~~~~~~~l~~~~~~L~~~kPDlVVsD~~~~~~~aA-~~lgIP~V~is~~~~~~i~~~~~~~~~~~~~~i~ 168 (838)
.....+. .......+++++.+||+|++........++ ....+|.|...+..+.... ....
T Consensus 106 ~~~~~~~--------~~~~~~~~~l~~~~~Dvv~~~~~~~~~~~~~~~~~~p~v~~~h~~~~~~~-----------~~~~ 166 (416)
T 2x6q_A 106 EMKELYL--------NVNRENSKFIDLSSFDYVLVHDPQPAALIEFYEKKSPWLWRCHIDLSSPN-----------REFW 166 (416)
T ss_dssp HHHHHHH--------HHHHHHHHSSCGGGSSEEEEESSTTGGGGGGSCCCSCEEEECCSCCSSCC-----------HHHH
T ss_pred HHHHHHH--------HHHHHHHHHHhhcCCCEEEEeccchhhHHHHHHhcCCEEEEEccccCCcc-----------HHHH
Confidence 0011111 122233556778899999987532221111 1123888776432211000 0001
Q ss_pred HHHHhhccccceEE-ecCCCC--CCC-CCCceeecCccccc--C-Cc---ChHHHHHHhCCCCCCcEEEEEcCCCCch--
Q 003222 169 WQIAEDYSHCEFLI-RLPGYC--PMP-AFRDVIDVPLVVRR--L-HK---SRKEVRKELGIEDDVKLLILNFGGQPAG-- 236 (838)
Q Consensus 169 ~~l~~~y~~~d~ll-~~~~~~--~~p-~~~~v~~ip~~~~~--~-~~---~~~~~r~~l~~~~~~~~Vlvs~Gs~~~~-- 236 (838)
..+...+..++.++ ...... ..+ ....+++.|+.... + .. .+..+++.++++++++ ++++.|.....
T Consensus 167 ~~~~~~~~~~~~~i~~~s~~~~~~~~~~~~~vi~ngvd~~~~~~~~~~~~~~~~~r~~~~~~~~~~-~i~~vGrl~~~Kg 245 (416)
T 2x6q_A 167 EFLRRFVEKYDRYIFHLPEYVQPELDRNKAVIMPPSIDPLSEKNVELKQTEILRILERFDVDPEKP-IITQVSRFDPWKG 245 (416)
T ss_dssp HHHHHHHTTSSEEEESSGGGSCTTSCTTTEEECCCCBCTTSTTTSCCCHHHHHHHHHHTTCCTTSC-EEEEECCCCTTSC
T ss_pred HHHHHHHHhCCEEEEechHHHHhhCCccceEEeCCCCChhhhcccccChhhHHHHHHHhCCCCCCc-EEEEEeccccccC
Confidence 11112222333333 111100 011 11123333332211 1 11 2346788888875555 45666766542
Q ss_pred -hhhHHh---hC--CCCcEEEEeCCCCC----------------CCCCCeEECCCCC-----CHHHHHhhcCEEEecC--
Q 003222 237 -WKLKEE---YL--PSGWKCLVCGASDS----------------QLPPNFIKLPKDA-----YTPDFMAASDCMLGKI-- 287 (838)
Q Consensus 237 -~~ll~~---l~--~~~~~~vv~G~~~~----------------~lp~nv~~~~~~~-----~~pdlLa~adl~It~g-- 287 (838)
..++++ +. .+++.++++|.... .+.++|+++++.+ .++++|+.+|++|..+
T Consensus 246 ~~~li~a~~~l~~~~~~~~l~i~G~g~~~~~~~~~~l~~~~~~~~~~~~V~~~G~~~~~~~~~~~~~~~~ad~~v~ps~~ 325 (416)
T 2x6q_A 246 IFDVIEIYRKVKEKIPGVQLLLVGVMAHDDPEGWIYFEKTLRKIGEDYDVKVLTNLIGVHAREVNAFQRASDVILQMSIR 325 (416)
T ss_dssp HHHHHHHHHHHHHHCTTCEEEEEECCCTTCHHHHHHHHHHHHHHTTCTTEEEEEGGGTCCHHHHHHHHHHCSEEEECCSS
T ss_pred HHHHHHHHHHHHHhCCCeEEEEEecCcccchhHHHHHHHHHHHhCCCCcEEEecccCCCCHHHHHHHHHhCCEEEECCCc
Confidence 223332 21 25788888887631 0357899988654 4678999999999754
Q ss_pred --ChhhHHHHHHcCCcEEEEeCCCCCChHHHHHHHHHcCcEEEEecCCCChhhHHHHHHHHhhCC
Q 003222 288 --GYGTVSEALAYKLPFVFVRRDYFNEEPFLRNMLEFYQGGVEMIRRDLLTGHWKPYLERAISLK 350 (838)
Q Consensus 288 --G~~Tv~Eal~~GvP~l~iP~~~~~EQ~~Na~~l~~~G~g~~l~~~~~~~~~l~~~l~~ll~~~ 350 (838)
..+++.||+++|+|+|+.+. ..+.+.++..+.|..++ +.+.+.++|.++++++
T Consensus 326 E~~~~~~lEAma~G~PvI~~~~------~g~~e~i~~~~~g~l~~----d~~~la~~i~~ll~~~ 380 (416)
T 2x6q_A 326 EGFGLTVTEAMWKGKPVIGRAV------GGIKFQIVDGETGFLVR----DANEAVEVVLYLLKHP 380 (416)
T ss_dssp CSSCHHHHHHHHTTCCEEEESC------HHHHHHCCBTTTEEEES----SHHHHHHHHHHHHHCH
T ss_pred CCCccHHHHHHHcCCCEEEccC------CCChhheecCCCeEEEC----CHHHHHHHHHHHHhCH
Confidence 34689999999999999863 24566666677888886 4678999999998765
|
| >1vgv_A UDP-N-acetylglucosamine 2-epimerase; structural genomics, isomerase; HET: UD1; 2.31A {Escherichia coli} SCOP: c.87.1.3 PDB: 1f6d_A* | Back alignment and structure |
|---|
Probab=99.12 E-value=1.5e-09 Score=120.16 Aligned_cols=150 Identities=13% Similarity=0.046 Sum_probs=99.0
Q ss_pred HHHHHhC-CCCCCcEEEEEcCCCC---ch-hhhHHh---hC--CCCcEEEEe-CCCCC---C------CCCCeEECCCC-
Q 003222 212 EVRKELG-IEDDVKLLILNFGGQP---AG-WKLKEE---YL--PSGWKCLVC-GASDS---Q------LPPNFIKLPKD- 270 (838)
Q Consensus 212 ~~r~~l~-~~~~~~~Vlvs~Gs~~---~~-~~ll~~---l~--~~~~~~vv~-G~~~~---~------lp~nv~~~~~~- 270 (838)
++++.++ +++++++++++.|... .+ ..++++ +. .+++.+++. |.... . ..+||+++++.
T Consensus 193 ~~~~~~~~~~~~~~~vl~~~gr~~~~~kg~~~li~a~~~l~~~~~~~~l~i~~g~~~~~~~~l~~~~~~~~~v~~~g~~~ 272 (384)
T 1vgv_A 193 ELAANYPFIDPDKKMILVTGHRRESFGRGFEEICHALADIATTHQDIQIVYPVHLNPNVREPVNRILGHVKNVILIDPQE 272 (384)
T ss_dssp HHHTTCTTCCTTSEEEEEECCCBSSCCHHHHHHHHHHHHHHHHCTTEEEEEECCBCHHHHHHHHHHHTTCTTEEEECCCC
T ss_pred HHHHhccccCCCCCEEEEEeCCccccchHHHHHHHHHHHHHhhCCCeEEEEEcCCCHHHHHHHHHHhhcCCCEEEeCCCC
Confidence 5666777 6556778888888654 22 223332 21 246666654 64321 0 13689885443
Q ss_pred -CCHHHHHhhcCEEEecCChhhHHHHHHcCCcEEEEeCCCCCChHHHHHHHHHcCcEEEEecCCCChhhHHHHHHHHhhC
Q 003222 271 -AYTPDFMAASDCMLGKIGYGTVSEALAYKLPFVFVRRDYFNEEPFLRNMLEFYQGGVEMIRRDLLTGHWKPYLERAISL 349 (838)
Q Consensus 271 -~~~pdlLa~adl~It~gG~~Tv~Eal~~GvP~l~iP~~~~~EQ~~Na~~l~~~G~g~~l~~~~~~~~~l~~~l~~ll~~ 349 (838)
.+++++|+.||+||+.+| +++.||+++|+|+|+.+... .. ..+.+.|.|+.++. +++.+.++|.+++++
T Consensus 273 ~~~~~~~~~~ad~~v~~Sg-~~~lEA~a~G~PvI~~~~~~--~~----~e~v~~g~g~lv~~---d~~~la~~i~~ll~d 342 (384)
T 1vgv_A 273 YLPFVWLMNHAWLILTDSG-GIQEEAPSLGKPVLVMRDTT--ER----PEAVTAGTVRLVGT---DKQRIVEEVTRLLKD 342 (384)
T ss_dssp HHHHHHHHHHCSEEEESSS-TGGGTGGGGTCCEEEESSCC--SC----HHHHHHTSEEEECS---SHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhCcEEEECCc-chHHHHHHcCCCEEEccCCC--Cc----chhhhCCceEEeCC---CHHHHHHHHHHHHhC
Confidence 357799999999999886 45889999999999998422 22 12455678988865 468899999999876
Q ss_pred CCCcc---------CCCCHHHHHHHHHHHHh
Q 003222 350 KPCYE---------GGINGGEVAAHILQETA 371 (838)
Q Consensus 350 ~~~~~---------~~~~g~~~~a~~i~~~~ 371 (838)
+..+. ......+++++.+.++.
T Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 373 (384)
T 1vgv_A 343 ENEYQAMSRAHNPYGDGQACSRILEALKNNR 373 (384)
T ss_dssp HHHHHHHHSSCCTTCCSCHHHHHHHHHHHTC
T ss_pred hHHHhhhhhccCCCcCCCHHHHHHHHHHHHH
Confidence 53110 34567777777777764
|
| >3hul_A HSK, HK, homoserine kinase; structural genomics, putative homoserine kinase, THRB, amino-acid biosynthesis, ATP-binding, cytoplasm; 2.19A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.11 E-value=1.8e-09 Score=116.23 Aligned_cols=97 Identities=13% Similarity=0.178 Sum_probs=74.5
Q ss_pred CCEEEEEEeCCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhhhcCCCCChhhHHHhhcCCCCeEEEEE
Q 003222 630 DSISMLVSSAVPEGKGVSSSASVEVASMSAIAAAHGLNIHPRDLALLCQKVENHIVGAPCGVMDQMASACGEANKLLAMV 709 (838)
Q Consensus 630 ~g~~i~i~s~iP~g~GLgSSAA~~va~~~al~~l~~~~l~~~ela~~a~~~E~~~~G~~~G~mDq~a~~~G~~~~~l~~d 709 (838)
.|++|.+.++||.++|||||||..+|++.|++.++|.++++++++++|.++| |.+ .|-.++.+||. .+ .
T Consensus 70 ~g~~i~i~~~iP~~~GLGsssa~~~a~~~al~~~~~~~l~~~el~~la~~~e----g~~---ddv~~~~~GG~---~~-~ 138 (298)
T 3hul_A 70 TPHHLVMTCDIPPARGLGSSSAAVVAGIELANTLAELNLSKEEKVRIAAEIE----GHP---DNVAPAVLGNW---VV-G 138 (298)
T ss_dssp CCEEEEEEECSCTTSSSSHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHH----SCS---TTHHHHHHCSE---EE-E
T ss_pred CceEEEEecCCCCCCCccHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhc----CCc---ccCcccccCCE---EE-E
Confidence 6999999999999999999999999999999999999999999999999999 333 23346779994 22 2
Q ss_pred ecCCcee--eeeccCCCeEEEEEeCCCCCcC
Q 003222 710 CQPAELL--GVVEIPSHIRFWGIDSGIRHSV 738 (838)
Q Consensus 710 ~~~~~~~--~~v~~~~~~~~vi~~s~~~~~~ 738 (838)
....+.. .++++| ++.++++..+...++
T Consensus 139 ~g~ge~~~~~~~~~p-~~~~vlv~p~~~~sT 168 (298)
T 3hul_A 139 AKLDGEDFYVRHLFP-DCALIAFIPKAELLT 168 (298)
T ss_dssp EEETTEEEEEEECCC--CEEEEEECCCCCC-
T ss_pred EeCCCcEEEEEcCCC-CeEEEEEECCCCCCc
Confidence 2222222 255655 488888887766543
|
| >2r60_A Glycosyl transferase, group 1; rossmann-fold; 1.80A {Halothermothrix orenii} PDB: 2r66_A* 2r68_A* | Back alignment and structure |
|---|
Probab=99.02 E-value=3.1e-08 Score=114.05 Aligned_cols=131 Identities=17% Similarity=0.059 Sum_probs=90.1
Q ss_pred HHHHHHhC-----CCCCCcEEEEEcCCCCch---hhhHHhhC------CCCcEEEEeCC--CC--------------C--
Q 003222 211 KEVRKELG-----IEDDVKLLILNFGGQPAG---WKLKEEYL------PSGWKCLVCGA--SD--------------S-- 258 (838)
Q Consensus 211 ~~~r~~l~-----~~~~~~~Vlvs~Gs~~~~---~~ll~~l~------~~~~~~vv~G~--~~--------------~-- 258 (838)
.++++.++ ++.+.+ ++++.|..... ..+++++. +..+.++++|. .. .
T Consensus 245 ~~~r~~~~~~~~~~~~~~~-~i~~vGrl~~~Kg~~~li~a~~~l~~~~~~~~~l~i~G~~~~~~~~y~~l~~~~~~y~~~ 323 (499)
T 2r60_A 245 AKITKYLERDLGSERMELP-AIIASSRLDQKKNHYGLVEAYVQNKELQDKANLVLTLRGIENPFEDYSRAGQEEKEILGK 323 (499)
T ss_dssp HHHHHHHHHHSCGGGTTSC-EEEECSCCCGGGCHHHHHHHHHTCHHHHHHCEEEEEESSCSBTTTBCTTSCHHHHHHHHH
T ss_pred HHHHHHhcccccccCCCCc-EEEEeecCccccCHHHHHHHHHHHHHhCCCceEEEEECCCCCcccccccccccchHHHHH
Confidence 56777777 654554 56788877653 23334321 12346777887 11 1
Q ss_pred --------CCCCCeEECCCC--CCHHHHHhhc----CEEEecC---C-hhhHHHHHHcCCcEEEEeCCCCCChHHHHHHH
Q 003222 259 --------QLPPNFIKLPKD--AYTPDFMAAS----DCMLGKI---G-YGTVSEALAYKLPFVFVRRDYFNEEPFLRNML 320 (838)
Q Consensus 259 --------~lp~nv~~~~~~--~~~pdlLa~a----dl~It~g---G-~~Tv~Eal~~GvP~l~iP~~~~~EQ~~Na~~l 320 (838)
.+.++|++++++ +.++++|+.| |++|.-. | .+++.||+++|+|+|+.... ...+.+
T Consensus 324 l~~~~~~~~l~~~V~~~G~v~~~~~~~~~~~a~~~~dv~v~pS~~Eg~~~~~lEAma~G~PvI~s~~~------g~~e~v 397 (499)
T 2r60_A 324 IIELIDNNDCRGKVSMFPLNSQQELAGCYAYLASKGSVFALTSFYEPFGLAPVEAMASGLPAVVTRNG------GPAEIL 397 (499)
T ss_dssp HHHHHHHTTCBTTEEEEECCSHHHHHHHHHHHHHTTCEEEECCSCBCCCSHHHHHHHTTCCEEEESSB------HHHHHT
T ss_pred HHHHHHhcCCCceEEECCCCCHHHHHHHHHhcCcCCCEEEECcccCCCCcHHHHHHHcCCCEEEecCC------CHHHHh
Confidence 146789999987 4677999999 9999532 2 35899999999999998632 345556
Q ss_pred HHcCcEEEEecCCCChhhHHHHHHHHhhCC
Q 003222 321 EFYQGGVEMIRRDLLTGHWKPYLERAISLK 350 (838)
Q Consensus 321 ~~~G~g~~l~~~~~~~~~l~~~l~~ll~~~ 350 (838)
.....|..++..+ ++.|.++|.++++++
T Consensus 398 ~~~~~g~l~~~~d--~~~la~~i~~ll~~~ 425 (499)
T 2r60_A 398 DGGKYGVLVDPED--PEDIARGLLKAFESE 425 (499)
T ss_dssp GGGTSSEEECTTC--HHHHHHHHHHHHSCH
T ss_pred cCCceEEEeCCCC--HHHHHHHHHHHHhCH
Confidence 6666788887665 478999999998765
|
| >1v4v_A UDP-N-acetylglucosamine 2-epimerase; UDP-GLCNAC, two domains, homodimer, riken structural genomics/proteomics initiative, RSGI; HET: MSE; 1.80A {Thermus thermophilus} SCOP: c.87.1.3 | Back alignment and structure |
|---|
Probab=99.00 E-value=2.4e-09 Score=118.46 Aligned_cols=141 Identities=13% Similarity=-0.023 Sum_probs=91.7
Q ss_pred CCcEEEEEcCCCCc--h-hhhHHh---hC--CCCcEEEE-eCCCCC--C-------CCCCeEECCCCC--CHHHHHhhcC
Q 003222 222 DVKLLILNFGGQPA--G-WKLKEE---YL--PSGWKCLV-CGASDS--Q-------LPPNFIKLPKDA--YTPDFMAASD 281 (838)
Q Consensus 222 ~~~~Vlvs~Gs~~~--~-~~ll~~---l~--~~~~~~vv-~G~~~~--~-------lp~nv~~~~~~~--~~pdlLa~ad 281 (838)
++++|+++.|.... + ..++++ +. .+++.+++ +|.... . ..++|+++++.. +++++|+.||
T Consensus 197 ~~~~vl~~~gr~~~~k~~~~ll~a~~~l~~~~~~~~lv~~~g~~~~~~~~l~~~~~~~~~v~~~g~~g~~~~~~~~~~ad 276 (376)
T 1v4v_A 197 EGPYVTVTMHRRENWPLLSDLAQALKRVAEAFPHLTFVYPVHLNPVVREAVFPVLKGVRNFVLLDPLEYGSMAALMRASL 276 (376)
T ss_dssp SSCEEEECCCCGGGGGGHHHHHHHHHHHHHHCTTSEEEEECCSCHHHHHHHHHHHTTCTTEEEECCCCHHHHHHHHHTEE
T ss_pred CCCEEEEEeCcccchHHHHHHHHHHHHHHhhCCCeEEEEECCCCHHHHHHHHHHhccCCCEEEECCCCHHHHHHHHHhCc
Confidence 45677777774321 2 223332 21 24566665 475431 0 135898885443 4679999999
Q ss_pred EEEecCChhhHHHHHHcCCcEEEEeCCCCCChHHHHHHHHHcCcEEEEecCCCChhhHHHHHHHHhhCCCCcc-------
Q 003222 282 CMLGKIGYGTVSEALAYKLPFVFVRRDYFNEEPFLRNMLEFYQGGVEMIRRDLLTGHWKPYLERAISLKPCYE------- 354 (838)
Q Consensus 282 l~It~gG~~Tv~Eal~~GvP~l~iP~~~~~EQ~~Na~~l~~~G~g~~l~~~~~~~~~l~~~l~~ll~~~~~~~------- 354 (838)
+||+.+| +.+.||+++|+|+|+.+.. .+++. +.+.|.|+.+. . +++.+.++|.++++++..+.
T Consensus 277 ~~v~~S~-g~~lEA~a~G~PvI~~~~~--~~~~~----~~~~g~g~lv~-~--d~~~la~~i~~ll~d~~~~~~~~~~~~ 346 (376)
T 1v4v_A 277 LLVTDSG-GLQEEGAALGVPVVVLRNV--TERPE----GLKAGILKLAG-T--DPEGVYRVVKGLLENPEELSRMRKAKN 346 (376)
T ss_dssp EEEESCH-HHHHHHHHTTCCEEECSSS--CSCHH----HHHHTSEEECC-S--CHHHHHHHHHHHHTCHHHHHHHHHSCC
T ss_pred EEEECCc-CHHHHHHHcCCCEEeccCC--Ccchh----hhcCCceEECC-C--CHHHHHHHHHHHHhChHhhhhhcccCC
Confidence 9999885 4567999999999998632 23322 34668888775 2 46789999999997652211
Q ss_pred --CCCCHHHHHHHHHHHHhc
Q 003222 355 --GGINGGEVAAHILQETAI 372 (838)
Q Consensus 355 --~~~~g~~~~a~~i~~~~~ 372 (838)
.....++++++.+.+++.
T Consensus 347 ~~~~~~~~~~i~~~i~~~~~ 366 (376)
T 1v4v_A 347 PYGDGKAGLMVARGVAWRLG 366 (376)
T ss_dssp SSCCSCHHHHHHHHHHHHTT
T ss_pred CCCCChHHHHHHHHHHHHhc
Confidence 345778888888887764
|
| >2iuy_A Avigt4, glycosyltransferase; antibiotics, family GT-4, avilamycin A; HET: MES; 2.1A {Streptomyces viridochromogenes} PDB: 2iv3_A* | Back alignment and structure |
|---|
Probab=98.97 E-value=1e-09 Score=119.72 Aligned_cols=260 Identities=15% Similarity=0.099 Sum_probs=145.4
Q ss_pred CceEEEEEeecC---------------CCcccHHHHHHHHHHHHHCCCeEEEEeCCCCcccccccCCCceeeeeeccCCC
Q 003222 13 SKHLVFAYYVTG---------------HGFGHATRVVEVVRNLISAGHDVHVVTGAPDFVFTSEIQSPRLFIRKVLLDCG 77 (838)
Q Consensus 13 m~~~~Il~~v~g---------------~G~GHv~r~laLA~~L~~~Gh~V~~v~~~~~~~~~~~i~~~~~~~~~~~~~~g 77 (838)
|+.|+|+++... .+.|.-.....++++|.++||+|++++........ ..+.+..
T Consensus 1 M~~mkIl~v~~~~~~~~~~~~~p~~p~~~gG~~~~~~~l~~~L~~~G~~v~v~~~~~~~~~~-----~~~~~~~------ 69 (342)
T 2iuy_A 1 MRPLKVALVNIPLRVPGSDAWISVPPQGYGGIQWVVANLMDGLLELGHEVFLLGAPGSPAGR-----PGLTVVP------ 69 (342)
T ss_dssp --CCEEEEECCCCBCTTSSSBCCSSCSSSCHHHHHHHHHHHHHHHTTCEEEEESCTTSCCCS-----TTEEECS------
T ss_pred CCccEEEEEeccccccCcccccccCcccCChHHHHHHHHHHHHHHcCCeEEEEecCCCCCCC-----Ccceecc------
Confidence 667889888766 23677888899999999999999999875421110 1111111
Q ss_pred cccccccccChHHHHHHHHHHhhccHHHHHHHHHHHHhcCCCcEEEECCCchHHHHHHHhCCcEEEEecCchh--HHHHh
Q 003222 78 AVQADALTVDRLASLEKYSETAVAPRKSILKDEVEWLNSIKADLVVSDVVPVACRAAADAGIRSVCVTNFSWD--FIYAE 155 (838)
Q Consensus 78 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~L~~~kPDlVVsD~~~~~~~aA~~lgIP~V~is~~~~~--~i~~~ 155 (838)
... . ....+++++.+||+|++.....+..+++..++| |...+-.+. .....
T Consensus 70 --------~~~---~---------------~~l~~~l~~~~~Dvi~~~~~~~~~~~~~~~~~p-v~~~h~~~~~~~~~d~ 122 (342)
T 2iuy_A 70 --------AGE---P---------------EEIERWLRTADVDVVHDHSGGVIGPAGLPPGTA-FISSHHFTTRPVNPVG 122 (342)
T ss_dssp --------CCS---H---------------HHHHHHHHHCCCSEEEECSSSSSCSTTCCTTCE-EEEEECSSSBCSCCTT
T ss_pred --------CCc---H---------------HHHHHHHHhcCCCEEEECCchhhHHHHhhcCCC-EEEecCCCCCcccceE
Confidence 000 0 022445778899999988644333346667999 654221111 00000
Q ss_pred hhhhcccchHHHHHHHHhhccccceEEecCCCCCCCCCCceeecCcccccCCcChHHHHHHhCCCCCCcEEEEEcCCCCc
Q 003222 156 YVMAAGHHHRSIVWQIAEDYSHCEFLIRLPGYCPMPAFRDVIDVPLVVRRLHKSRKEVRKELGIEDDVKLLILNFGGQPA 235 (838)
Q Consensus 156 ~~~~~~~~~~~i~~~l~~~y~~~d~ll~~~~~~~~p~~~~v~~ip~~~~~~~~~~~~~r~~l~~~~~~~~Vlvs~Gs~~~ 235 (838)
.+.. -+.+.+ .+.. +....+++.|+......+.+. .. ++++ ++++.|....
T Consensus 123 ii~~----S~~~~~----~~~~-------------~~~~~vi~ngvd~~~~~~~~~------~~-~~~~-~i~~vG~~~~ 173 (342)
T 2iuy_A 123 CTYS----SRAQRA----HCGG-------------GDDAPVIPIPVDPARYRSAAD------QV-AKED-FLLFMGRVSP 173 (342)
T ss_dssp EEES----CHHHHH----HTTC-------------CTTSCBCCCCBCGGGSCCSTT------CC-CCCS-CEEEESCCCG
T ss_pred EEEc----CHHHHH----HHhc-------------CCceEEEcCCCChhhcCcccc------cC-CCCC-EEEEEecccc
Confidence 0000 011111 1111 011122233332211111111 11 2333 4566777664
Q ss_pred h---hhhHHhhCCCCcEEEEeCCCCCC---------CCCCeEECCCCCCH--HHHHhhcCEEEec--------------C
Q 003222 236 G---WKLKEEYLPSGWKCLVCGASDSQ---------LPPNFIKLPKDAYT--PDFMAASDCMLGK--------------I 287 (838)
Q Consensus 236 ~---~~ll~~l~~~~~~~vv~G~~~~~---------lp~nv~~~~~~~~~--pdlLa~adl~It~--------------g 287 (838)
. ..+++++...++.++++|..... +++||++++++++. +++|+.||++|.. +
T Consensus 174 ~Kg~~~li~a~~~~~~~l~i~G~g~~~~~l~~~~~~~~~~v~~~g~~~~~~l~~~~~~adv~v~ps~~~~~~~~~~~~E~ 253 (342)
T 2iuy_A 174 HKGALEAAAFAHACGRRLVLAGPAWEPEYFDEITRRYGSTVEPIGEVGGERRLDLLASAHAVLAMSQAVTGPWGGIWCEP 253 (342)
T ss_dssp GGTHHHHHHHHHHHTCCEEEESCCCCHHHHHHHHHHHTTTEEECCCCCHHHHHHHHHHCSEEEECCCCCCCTTCSCCCCC
T ss_pred ccCHHHHHHHHHhcCcEEEEEeCcccHHHHHHHHHHhCCCEEEeccCCHHHHHHHHHhCCEEEECCcccccccccccccC
Confidence 3 23333322226778888876431 35899999998754 7999999999942 2
Q ss_pred ChhhHHHHHHcCCcEEEEeCCCCCChHHHHHHHHH--cCcEEEEecCCCChhhHHHHHHHHhh
Q 003222 288 GYGTVSEALAYKLPFVFVRRDYFNEEPFLRNMLEF--YQGGVEMIRRDLLTGHWKPYLERAIS 348 (838)
Q Consensus 288 G~~Tv~Eal~~GvP~l~iP~~~~~EQ~~Na~~l~~--~G~g~~l~~~~~~~~~l~~~l~~ll~ 348 (838)
-.+++.||+++|+|+|+.+.. .+.+.++. ...|..++. + .+.+.++|.++++
T Consensus 254 ~~~~~~EAma~G~PvI~s~~~------~~~e~~~~~~~~~g~~~~~-d--~~~l~~~i~~l~~ 307 (342)
T 2iuy_A 254 GATVVSEAAVSGTPVVGTGNG------CLAEIVPSVGEVVGYGTDF-A--PDEARRTLAGLPA 307 (342)
T ss_dssp CCHHHHHHHHTTCCEEECCTT------THHHHGGGGEEECCSSSCC-C--HHHHHHHHHTSCC
T ss_pred ccHHHHHHHhcCCCEEEcCCC------ChHHHhcccCCCceEEcCC-C--HHHHHHHHHHHHH
Confidence 235799999999999998742 34555666 556766665 3 5678888877653
|
| >2gek_A Phosphatidylinositol mannosyltransferase (PIMA); GT4 glycosyltransferase, rossmann fold, complex; HET: GDP; 2.40A {Mycobacterium smegmatis} PDB: 2gej_A* | Back alignment and structure |
|---|
Probab=98.95 E-value=1.2e-08 Score=113.41 Aligned_cols=292 Identities=15% Similarity=0.076 Sum_probs=154.9
Q ss_pred ceEEEEEeecCC---CcccHHHHHHHHHHHHHCCCeEEEEeCCCCcc-cccccCCCceeeeeeccCCCcccccccccChH
Q 003222 14 KHLVFAYYVTGH---GFGHATRVVEVVRNLISAGHDVHVVTGAPDFV-FTSEIQSPRLFIRKVLLDCGAVQADALTVDRL 89 (838)
Q Consensus 14 ~~~~Il~~v~g~---G~GHv~r~laLA~~L~~~Gh~V~~v~~~~~~~-~~~~i~~~~~~~~~~~~~~g~~~~~~~~~~~~ 89 (838)
+.|+|+|+.+.. ..|+-..+..++++|.++||+|++++...... ..... ... + . .. .....
T Consensus 19 ~~MkIl~i~~~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~------~~~-~-~--~~-----~~~~~ 83 (406)
T 2gek_A 19 SHMRIGMVCPYSFDVPGGVQSHVLQLAEVLRDAGHEVSVLAPASPHVKLPDYV------VSG-G-K--AV-----PIPYN 83 (406)
T ss_dssp --CEEEEECSSCTTSCCHHHHHHHHHHHHHHHTTCEEEEEESCCTTSCCCTTE------EEC-C-C--CC----------
T ss_pred CcceEEEEeccCCCCCCcHHHHHHHHHHHHHHCCCeEEEEecCCccccCCccc------ccC-C-c--EE-----ecccc
Confidence 347787776542 25777899999999999999999998754211 11100 000 0 0 00 00000
Q ss_pred HHHHHHHHHhhccHHHHHHHHHHHHhcCCCcEEEECC---CchHHHHHHHhCCcEEEEecCchh--HHHHhhhhhcccch
Q 003222 90 ASLEKYSETAVAPRKSILKDEVEWLNSIKADLVVSDV---VPVACRAAADAGIRSVCVTNFSWD--FIYAEYVMAAGHHH 164 (838)
Q Consensus 90 ~~l~~~~~~~~~~~~~~l~~~~~~L~~~kPDlVVsD~---~~~~~~aA~~lgIP~V~is~~~~~--~i~~~~~~~~~~~~ 164 (838)
.. ...+.. .. .......+++++.+||+|++.. ...+..+++..++|.|...+-.+. .....+.
T Consensus 84 ~~---~~~~~~-~~-~~~~~l~~~l~~~~~Dii~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~~~~~------- 151 (406)
T 2gek_A 84 GS---VARLRF-GP-ATHRKVKKWIAEGDFDVLHIHEPNAPSLSMLALQAAEGPIVATFHTSTTKSLTLSVFQ------- 151 (406)
T ss_dssp ----------C-CH-HHHHHHHHHHHHHCCSEEEEECCCSSSHHHHHHHHEESSEEEEECCCCCSHHHHHHHH-------
T ss_pred CC---cccccc-cH-HHHHHHHHHHHhcCCCEEEECCccchHHHHHHHHhcCCCEEEEEcCcchhhhhHHHHH-------
Confidence 00 000000 01 1223446678888999999764 233556667779999876332111 0000000
Q ss_pred HHHHHHHHhhccccceEEecCCCC------CCCCCCc-eeecCcccccCCcChHHHHHHhCCCCCCcEEEEEcCCC-Cch
Q 003222 165 RSIVWQIAEDYSHCEFLIRLPGYC------PMPAFRD-VIDVPLVVRRLHKSRKEVRKELGIEDDVKLLILNFGGQ-PAG 236 (838)
Q Consensus 165 ~~i~~~l~~~y~~~d~ll~~~~~~------~~p~~~~-v~~ip~~~~~~~~~~~~~r~~l~~~~~~~~Vlvs~Gs~-~~~ 236 (838)
..+...+..++.++...... ..+. .+ +++.|+......+.+ ...+.+.++ .++++.|+. ...
T Consensus 152 ----~~~~~~~~~~d~ii~~s~~~~~~~~~~~~~-~~~vi~~~v~~~~~~~~~----~~~~~~~~~-~~i~~~G~~~~~~ 221 (406)
T 2gek_A 152 ----GILRPYHEKIIGRIAVSDLARRWQMEALGS-DAVEIPNGVDVASFADAP----LLDGYPREG-RTVLFLGRYDEPR 221 (406)
T ss_dssp ----STTHHHHTTCSEEEESSHHHHHHHHHHHSS-CEEECCCCBCHHHHHTCC----CCTTCSCSS-CEEEEESCTTSGG
T ss_pred ----HHHHHHHhhCCEEEECCHHHHHHHHHhcCC-CcEEecCCCChhhcCCCc----hhhhccCCC-eEEEEEeeeCccc
Confidence 00001112223222211000 0000 11 112221111000000 001122222 466777877 442
Q ss_pred ---hhhHH---hhCC--CCcEEEEeCCCCCC--------CCCCeEECCCCCCH--HHHHhhcCEEEecC----C-hhhHH
Q 003222 237 ---WKLKE---EYLP--SGWKCLVCGASDSQ--------LPPNFIKLPKDAYT--PDFMAASDCMLGKI----G-YGTVS 293 (838)
Q Consensus 237 ---~~ll~---~l~~--~~~~~vv~G~~~~~--------lp~nv~~~~~~~~~--pdlLa~adl~It~g----G-~~Tv~ 293 (838)
..+++ .+.. +++.++++|..... +.+||++.+++++. +++|+.||++|... | .+++.
T Consensus 222 Kg~~~li~a~~~l~~~~~~~~l~i~G~~~~~~l~~~~~~~~~~v~~~g~~~~~~~~~~~~~adv~v~ps~~~e~~~~~~~ 301 (406)
T 2gek_A 222 KGMAVLLAALPKLVARFPDVEILIVGRGDEDELREQAGDLAGHLRFLGQVDDATKASAMRSADVYCAPHLGGESFGIVLV 301 (406)
T ss_dssp GCHHHHHHHHHHHHTTSTTCEEEEESCSCHHHHHHHTGGGGGGEEECCSCCHHHHHHHHHHSSEEEECCCSCCSSCHHHH
T ss_pred cCHHHHHHHHHHHHHHCCCeEEEEEcCCcHHHHHHHHHhccCcEEEEecCCHHHHHHHHHHCCEEEecCCCCCCCchHHH
Confidence 22333 2322 57888888876431 25789999988654 79999999999653 2 35899
Q ss_pred HHHHcCCcEEEEeCCCCCChHHHHHHHHHcCcEEEEecCCCChhhHHHHHHHHhhCC
Q 003222 294 EALAYKLPFVFVRRDYFNEEPFLRNMLEFYQGGVEMIRRDLLTGHWKPYLERAISLK 350 (838)
Q Consensus 294 Eal~~GvP~l~iP~~~~~EQ~~Na~~l~~~G~g~~l~~~~~~~~~l~~~l~~ll~~~ 350 (838)
||+++|+|+|+.+. ....+.+.....|..++..+ .+.+.++|.++++++
T Consensus 302 Ea~a~G~PvI~~~~------~~~~e~i~~~~~g~~~~~~d--~~~l~~~i~~l~~~~ 350 (406)
T 2gek_A 302 EAMAAGTAVVASDL------DAFRRVLADGDAGRLVPVDD--ADGMAAALIGILEDD 350 (406)
T ss_dssp HHHHHTCEEEECCC------HHHHHHHTTTTSSEECCTTC--HHHHHHHHHHHHHCH
T ss_pred HHHHcCCCEEEecC------CcHHHHhcCCCceEEeCCCC--HHHHHHHHHHHHcCH
Confidence 99999999999762 35566677677888887655 468999999998765
|
| >3beo_A UDP-N-acetylglucosamine 2-epimerase; UDP-GLCNAC, allosteric, regulation, isomerase; HET: UD1 UDP; 1.70A {Bacillus anthracis} PDB: 1o6c_A | Back alignment and structure |
|---|
Probab=98.78 E-value=5e-07 Score=99.30 Aligned_cols=148 Identities=13% Similarity=0.028 Sum_probs=92.6
Q ss_pred HHHHHHhCCCCCCcEEEEEcCCCCc---h-hhhHHh---hC--CCCcEEEEe-CCCC--CC-----CC--CCeEECCCCC
Q 003222 211 KEVRKELGIEDDVKLLILNFGGQPA---G-WKLKEE---YL--PSGWKCLVC-GASD--SQ-----LP--PNFIKLPKDA 271 (838)
Q Consensus 211 ~~~r~~l~~~~~~~~Vlvs~Gs~~~---~-~~ll~~---l~--~~~~~~vv~-G~~~--~~-----lp--~nv~~~~~~~ 271 (838)
.++++.+ +++++++++.|.... + ..++++ +. .+++.+++. |... .. +. +||++.++..
T Consensus 196 ~~~~~~~---~~~~~vl~~~gr~~~~~K~~~~li~a~~~l~~~~~~~~~i~~~g~~~~~~~~~~~~~~~~~~v~~~g~~~ 272 (375)
T 3beo_A 196 HPVLEKL---GNNRLVLMTAHRRENLGEPMRNMFRAIKRLVDKHEDVQVVYPVHMNPVVRETANDILGDYGRIHLIEPLD 272 (375)
T ss_dssp CHHHHTT---TTSEEEEEECCCGGGTTHHHHHHHHHHHHHHHHCTTEEEEEECCSCHHHHHHHHHHHTTCTTEEEECCCC
T ss_pred HHHHHhc---cCCCeEEEEecccccchhHHHHHHHHHHHHHhhCCCeEEEEeCCCCHHHHHHHHHHhhccCCEEEeCCCC
Confidence 3455554 245677888886542 2 123332 21 246665543 3221 00 12 6899866543
Q ss_pred --CHHHHHhhcCEEEecCChhhHHHHHHcCCcEEEEeCCCCCChHHHHHHHHHcCcEEEEecCCCChhhHHHHHHHHhhC
Q 003222 272 --YTPDFMAASDCMLGKIGYGTVSEALAYKLPFVFVRRDYFNEEPFLRNMLEFYQGGVEMIRRDLLTGHWKPYLERAISL 349 (838)
Q Consensus 272 --~~pdlLa~adl~It~gG~~Tv~Eal~~GvP~l~iP~~~~~EQ~~Na~~l~~~G~g~~l~~~~~~~~~l~~~l~~ll~~ 349 (838)
.++++|+.||+||+.+| +++.||+++|+|+|+.+. .... ..+.+.|.|..++. +++.+.++|.+++++
T Consensus 273 ~~~~~~~~~~ad~~v~~sg-~~~lEA~a~G~Pvi~~~~--~~~~----~e~v~~g~g~~v~~---d~~~la~~i~~ll~~ 342 (375)
T 3beo_A 273 VIDFHNVAARSYLMLTDSG-GVQEEAPSLGVPVLVLRD--TTER----PEGIEAGTLKLAGT---DEETIFSLADELLSD 342 (375)
T ss_dssp HHHHHHHHHTCSEEEECCH-HHHHHHHHHTCCEEECSS--CCSC----HHHHHTTSEEECCS---CHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhCcEEEECCC-ChHHHHHhcCCCEEEecC--CCCC----ceeecCCceEEcCC---CHHHHHHHHHHHHhC
Confidence 46689999999999875 669999999999999852 1222 22456778888763 467899999999976
Q ss_pred CCCcc---------CCCCHHHHHHHHHHHHh
Q 003222 350 KPCYE---------GGINGGEVAAHILQETA 371 (838)
Q Consensus 350 ~~~~~---------~~~~g~~~~a~~i~~~~ 371 (838)
+..+. ......+++++.+.+++
T Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 373 (375)
T 3beo_A 343 KEAHDKMSKASNPYGDGRASERIVEAILKHF 373 (375)
T ss_dssp HHHHHHHCCCCCTTCCSCHHHHHHHHHHHHT
T ss_pred hHhHhhhhhcCCCCCCCcHHHHHHHHHHHHh
Confidence 52110 23456667777766653
|
| >1rzu_A Glycogen synthase 1; glycosyl-transferase, GT-B fold, rossmann fold, ADP-binding, transferase; HET: ADP; 2.30A {Agrobacterium tumefaciens} SCOP: c.87.1.8 PDB: 1rzv_A | Back alignment and structure |
|---|
Probab=98.77 E-value=2.6e-07 Score=105.71 Aligned_cols=130 Identities=20% Similarity=0.097 Sum_probs=90.6
Q ss_pred hHHHHHHhCCCCCCcEEEEEcCCCCch--h-hhHH---hhCCCCcEEEEeCCCCC---C--------CCCCeE-ECCCCC
Q 003222 210 RKEVRKELGIEDDVKLLILNFGGQPAG--W-KLKE---EYLPSGWKCLVCGASDS---Q--------LPPNFI-KLPKDA 271 (838)
Q Consensus 210 ~~~~r~~l~~~~~~~~Vlvs~Gs~~~~--~-~ll~---~l~~~~~~~vv~G~~~~---~--------lp~nv~-~~~~~~ 271 (838)
+..+++.++++.+...++++.|..... . .+++ .+..+++.++++|.... . +++||. +.++..
T Consensus 277 ~~~~r~~~~~~~~~~~~i~~vGrl~~~Kg~~~li~a~~~l~~~~~~l~ivG~g~~~~~~~l~~~~~~~~~~v~~~~g~~~ 356 (485)
T 1rzu_A 277 KKAVAEHFRIDDDGSPLFCVISRLTWQKGIDLMAEAVDEIVSLGGRLVVLGAGDVALEGALLAAASRHHGRVGVAIGYNE 356 (485)
T ss_dssp HHHHHHHHTCCCSSSCEEEEESCBSTTTTHHHHHTTHHHHHHTTCEEEEEECBCHHHHHHHHHHHHHTTTTEEEEESCCH
T ss_pred HHHHHHhcCCCCCCCeEEEEEccCccccCHHHHHHHHHHHHhcCceEEEEeCCchHHHHHHHHHHHhCCCcEEEecCCCH
Confidence 467888899876523477888887653 2 2222 23234788888887642 1 467887 678854
Q ss_pred CH-HHHHhhcCEEEec----CChhhHHHHHHcCCcEEEEeCCCCCChHHHHHHHHHc---------CcEEEEecCCCChh
Q 003222 272 YT-PDFMAASDCMLGK----IGYGTVSEALAYKLPFVFVRRDYFNEEPFLRNMLEFY---------QGGVEMIRRDLLTG 337 (838)
Q Consensus 272 ~~-pdlLa~adl~It~----gG~~Tv~Eal~~GvP~l~iP~~~~~EQ~~Na~~l~~~---------G~g~~l~~~~~~~~ 337 (838)
.. +++|+.||++|.- +..+++.|||++|+|+|+... ..+.+.++.. +.|..++..+ ++
T Consensus 357 ~~~~~~~~~adv~v~pS~~E~~~~~~lEAma~G~PvI~s~~------gg~~e~v~~~~~~~~~~~~~~G~l~~~~d--~~ 428 (485)
T 1rzu_A 357 PLSHLMQAGCDAIIIPSRFEPCGLTQLYALRYGCIPVVART------GGLADTVIDANHAALASKAATGVQFSPVT--LD 428 (485)
T ss_dssp HHHHHHHHHCSEEEECCSCCSSCSHHHHHHHHTCEEEEESS------HHHHHHCCBCCHHHHHTTCCCBEEESSCS--HH
T ss_pred HHHHHHHhcCCEEEECcccCCCCHHHHHHHHCCCCEEEeCC------CChhheecccccccccccCCcceEeCCCC--HH
Confidence 44 6899999999953 334689999999999999763 2445555554 6888887655 47
Q ss_pred hHHHHHHHHh
Q 003222 338 HWKPYLERAI 347 (838)
Q Consensus 338 ~l~~~l~~ll 347 (838)
.|.++|.+++
T Consensus 429 ~la~~i~~ll 438 (485)
T 1rzu_A 429 GLKQAIRRTV 438 (485)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 8899999988
|
| >4hwg_A UDP-N-acetylglucosamine 2-epimerase; ssgcid, structural genomics, seattle structural genomics center for infectious disease, isomerase; 2.00A {Rickettsia bellii} | Back alignment and structure |
|---|
Probab=98.75 E-value=1.2e-07 Score=105.78 Aligned_cols=151 Identities=11% Similarity=0.044 Sum_probs=97.2
Q ss_pred hHHHHHHhCCCCCCcEEEEEcCCCC---ch---hhhHHhh---CCC-CcEEEEe-CCCCC----CC------CCCeEECC
Q 003222 210 RKEVRKELGIEDDVKLLILNFGGQP---AG---WKLKEEY---LPS-GWKCLVC-GASDS----QL------PPNFIKLP 268 (838)
Q Consensus 210 ~~~~r~~l~~~~~~~~Vlvs~Gs~~---~~---~~ll~~l---~~~-~~~~vv~-G~~~~----~l------p~nv~~~~ 268 (838)
+.++++.+++++ ++++++++|... .. ..+++++ ... ++.+++. ++... .. .+||++++
T Consensus 191 ~~~~~~~lgl~~-~~~iLvt~hr~e~~~~~~~l~~ll~al~~l~~~~~~~vv~p~~p~~~~~l~~~~~~~~~~~~v~l~~ 269 (385)
T 4hwg_A 191 KSDILDKLSLTP-KQYFLISSHREENVDVKNNLKELLNSLQMLIKEYNFLIIFSTHPRTKKRLEDLEGFKELGDKIRFLP 269 (385)
T ss_dssp HCCHHHHTTCCT-TSEEEEEECCC-----CHHHHHHHHHHHHHHHHHCCEEEEEECHHHHHHHHTSGGGGGTGGGEEECC
T ss_pred hhHHHHHcCCCc-CCEEEEEeCCchhcCcHHHHHHHHHHHHHHHhcCCeEEEEECChHHHHHHHHHHHHhcCCCCEEEEc
Confidence 345778889864 678888887532 11 1233332 111 4555543 32110 12 25788765
Q ss_pred CCC--CHHHHHhhcCEEEecCChhhHHHHHHcCCcEEEEeCCCCCChHHHHHHHHHcCcEEEEecCCCChhhHHHHHHHH
Q 003222 269 KDA--YTPDFMAASDCMLGKIGYGTVSEALAYKLPFVFVRRDYFNEEPFLRNMLEFYQGGVEMIRRDLLTGHWKPYLERA 346 (838)
Q Consensus 269 ~~~--~~pdlLa~adl~It~gG~~Tv~Eal~~GvP~l~iP~~~~~EQ~~Na~~l~~~G~g~~l~~~~~~~~~l~~~l~~l 346 (838)
... .+..+|++||++||.+|. .+.||+++|+|+|.++. ..|.+. +.+.|.++.+.. +++.+.+++.++
T Consensus 270 ~lg~~~~~~l~~~adlvvt~SGg-v~~EA~alG~Pvv~~~~--~ter~e----~v~~G~~~lv~~---d~~~i~~ai~~l 339 (385)
T 4hwg_A 270 AFSFTDYVKLQMNAFCILSDSGT-ITEEASILNLPALNIRE--AHERPE----GMDAGTLIMSGF---KAERVLQAVKTI 339 (385)
T ss_dssp CCCHHHHHHHHHHCSEEEECCTT-HHHHHHHTTCCEEECSS--SCSCTH----HHHHTCCEECCS---SHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHhCcEEEECCcc-HHHHHHHcCCCEEEcCC--Cccchh----hhhcCceEEcCC---CHHHHHHHHHHH
Confidence 544 356899999999999985 57999999999999973 333111 356788776642 367899999999
Q ss_pred hhCCCCcc----------CCCCHHHHHHHHHHHHh
Q 003222 347 ISLKPCYE----------GGINGGEVAAHILQETA 371 (838)
Q Consensus 347 l~~~~~~~----------~~~~g~~~~a~~i~~~~ 371 (838)
++++..+. ..++.++++++.|.+++
T Consensus 340 l~d~~~~~~m~~~~~~~~g~g~aa~rI~~~l~~~~ 374 (385)
T 4hwg_A 340 TEEHDNNKRTQGLVPDYNEAGLVSKKILRIVLSYV 374 (385)
T ss_dssp HTTCBTTBCCSCCCHHHHTCCCHHHHHHHHHHHHH
T ss_pred HhChHHHHHhhccCCCCCCCChHHHHHHHHHHHHh
Confidence 98765432 35667777777777763
|
| >2qzs_A Glycogen synthase; glycosyl-transferase, GT-B fold, rossmann fold, closed-form, ADP and glucose binding, glycogen biosynthesis; HET: GLC ADP 250; 2.20A {Escherichia coli} PDB: 2r4t_A* 2r4u_A* 3guh_A* 3cx4_A* 3cop_A* 3d1j_A | Back alignment and structure |
|---|
Probab=98.61 E-value=8.7e-07 Score=101.34 Aligned_cols=130 Identities=16% Similarity=0.109 Sum_probs=88.4
Q ss_pred hHHHHHHhCCCC-CCcEEEEEcCCCCch---hhhHHh---hCCCCcEEEEeCCCCC-----------CCCCCeE-ECCCC
Q 003222 210 RKEVRKELGIED-DVKLLILNFGGQPAG---WKLKEE---YLPSGWKCLVCGASDS-----------QLPPNFI-KLPKD 270 (838)
Q Consensus 210 ~~~~r~~l~~~~-~~~~Vlvs~Gs~~~~---~~ll~~---l~~~~~~~vv~G~~~~-----------~lp~nv~-~~~~~ 270 (838)
+..+++.+++++ +...++++.|..... ..++++ +..+++.++++|.... .++.+|. +.++.
T Consensus 277 ~~~~r~~~~~~~~~~~~~i~~vGrl~~~Kg~~~li~a~~~l~~~~~~l~ivG~g~~~~~~~l~~~~~~~~~~v~~~~g~~ 356 (485)
T 2qzs_A 277 KRQLQIAMGLKVDDKVPLFAVVSRLTSQKGLDLVLEALPGLLEQGGQLALLGAGDPVLQEGFLAAAAEYPGQVGVQIGYH 356 (485)
T ss_dssp HHHHHHHHTCCCCTTSCEEEEEEEESGGGCHHHHHHHHHHHHHTTCEEEEEEEECHHHHHHHHHHHHHSTTTEEEEESCC
T ss_pred HHHHHHHcCCCCCCCCeEEEEeccCccccCHHHHHHHHHHHhhCCcEEEEEeCCchHHHHHHHHHHHhCCCcEEEeCCCC
Confidence 467888899864 133456677766542 223332 3224788888876531 1457886 77875
Q ss_pred CCH-HHHHhhcCEEEecC----ChhhHHHHHHcCCcEEEEeCCCCCChHHHHHHHHHc---------CcEEEEecCCCCh
Q 003222 271 AYT-PDFMAASDCMLGKI----GYGTVSEALAYKLPFVFVRRDYFNEEPFLRNMLEFY---------QGGVEMIRRDLLT 336 (838)
Q Consensus 271 ~~~-pdlLa~adl~It~g----G~~Tv~Eal~~GvP~l~iP~~~~~EQ~~Na~~l~~~---------G~g~~l~~~~~~~ 336 (838)
... +++|+.||++|.-+ ..+++.|||++|+|+|+... ..+.+.+... +.|..++..+ +
T Consensus 357 ~~~~~~~~~~adv~v~pS~~E~~g~~~lEAma~G~PvI~s~~------gg~~e~v~~~~~~~~~~~~~~G~l~~~~d--~ 428 (485)
T 2qzs_A 357 EAFSHRIMGGADVILVPSRFEPCGLTQLYGLKYGTLPLVRRT------GGLADTVSDCSLENLADGVASGFVFEDSN--A 428 (485)
T ss_dssp HHHHHHHHHHCSEEEECCSCCSSCSHHHHHHHHTCEEEEESS------HHHHHHCCBCCHHHHHTTCCCBEEECSSS--H
T ss_pred HHHHHHHHHhCCEEEECCccCCCcHHHHHHHHCCCCEEECCC------CCccceeccCccccccccccceEEECCCC--H
Confidence 443 68999999999533 34689999999999999863 2444555544 6888887665 5
Q ss_pred hhHHHHHHHHh
Q 003222 337 GHWKPYLERAI 347 (838)
Q Consensus 337 ~~l~~~l~~ll 347 (838)
+.|.++|.+++
T Consensus 429 ~~la~~i~~ll 439 (485)
T 2qzs_A 429 WSLLRAIRRAF 439 (485)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 78999999988
|
| >2hy7_A Glucuronosyltransferase GUMK; glycosyltransferases, xanthan, membrane-associated proteins; 1.90A {Xanthomonas campestris} PDB: 2q6v_A* 3cv3_A* 3cuy_A* | Back alignment and structure |
|---|
Probab=98.57 E-value=8.3e-06 Score=91.41 Aligned_cols=134 Identities=7% Similarity=-0.097 Sum_probs=93.5
Q ss_pred CcEEEEEcCCCCchhhhHHhhC--CCCcEEEEeCCCCC---CCCCCeEECCCCC--CHHHHHhhcCEEEec----CChhh
Q 003222 223 VKLLILNFGGQPAGWKLKEEYL--PSGWKCLVCGASDS---QLPPNFIKLPKDA--YTPDFMAASDCMLGK----IGYGT 291 (838)
Q Consensus 223 ~~~Vlvs~Gs~~~~~~ll~~l~--~~~~~~vv~G~~~~---~lp~nv~~~~~~~--~~pdlLa~adl~It~----gG~~T 291 (838)
.+.++++.|.......++..+. .+++.++++|.... .+.+||+++|+++ .++++|+.||++|.- +-.++
T Consensus 221 ~~~~i~~vGrl~~~Kg~~~~l~~~~~~~~l~ivG~g~~~~~~l~~~V~f~G~~~~~~l~~~~~~adv~v~ps~~E~~~~~ 300 (406)
T 2hy7_A 221 EGIHAVAVGSMLFDPEFFVVASKAFPQVTFHVIGSGMGRHPGYGDNVIVYGEMKHAQTIGYIKHARFGIAPYASEQVPVY 300 (406)
T ss_dssp SSEEEEEECCTTBCHHHHHHHHHHCTTEEEEEESCSSCCCTTCCTTEEEECCCCHHHHHHHHHTCSEEECCBSCSCCCTT
T ss_pred CCcEEEEEeccccccCHHHHHHHhCCCeEEEEEeCchHHhcCCCCCEEEcCCCCHHHHHHHHHhcCEEEECCCcccCchH
Confidence 3367788888876433444332 36788888886532 2578999999885 577999999999952 23357
Q ss_pred HHHHH-------HcCCcEEEEeCCCCCChHHHHHHHHHcCcEEE-EecCCCChhhHHHHHHHHhhCCCCccCCCCHHHHH
Q 003222 292 VSEAL-------AYKLPFVFVRRDYFNEEPFLRNMLEFYQGGVE-MIRRDLLTGHWKPYLERAISLKPCYEGGINGGEVA 363 (838)
Q Consensus 292 v~Eal-------~~GvP~l~iP~~~~~EQ~~Na~~l~~~G~g~~-l~~~~~~~~~l~~~l~~ll~~~~~~~~~~~g~~~~ 363 (838)
+.||+ ++|+|+|+... +.....|.. +...+ ++.|.++|.++++++.......-.-+..
T Consensus 301 ~lEAm~Kl~eYla~G~PVIas~~------------v~~~~~G~l~v~~~d--~~~la~ai~~ll~~~~~~~~~~~sw~~~ 366 (406)
T 2hy7_A 301 LADSSMKLLQYDFFGLPAVCPNA------------VVGPYKSRFGYTPGN--ADSVIAAITQALEAPRVRYRQCLNWSDT 366 (406)
T ss_dssp HHHHCHHHHHHHHHTCCEEEEGG------------GTCSCSSEEEECTTC--HHHHHHHHHHHHHCCCCCCSCCCBHHHH
T ss_pred HHHHHHHHHHHhhCCCcEEEehh------------cccCcceEEEeCCCC--HHHHHHHHHHHHhCcchhhhhcCCHHHH
Confidence 89999 99999999863 334455877 77665 5789999999998875222334455566
Q ss_pred HHHHHHH
Q 003222 364 AHILQET 370 (838)
Q Consensus 364 a~~i~~~ 370 (838)
++.+.++
T Consensus 367 a~~~~~~ 373 (406)
T 2hy7_A 367 TDRVLDP 373 (406)
T ss_dssp HHHHHCG
T ss_pred HHHHHHh
Confidence 6666555
|
| >3oy2_A Glycosyltransferase B736L; rossmann fold, GDP-mannose, sugar, VIRU proteins, viral protein,transferase; 2.31A {Paramecium bursaria chlorella virus NY} PDB: 3oy7_A* | Back alignment and structure |
|---|
Probab=98.52 E-value=3.1e-06 Score=94.40 Aligned_cols=130 Identities=12% Similarity=0.007 Sum_probs=83.7
Q ss_pred HHHHHhCCCC-CCcEEEEEcCCCCch---hhhHHh---hC--CCCcEEEEeCCCCCC-----------------CCCC--
Q 003222 212 EVRKELGIED-DVKLLILNFGGQPAG---WKLKEE---YL--PSGWKCLVCGASDSQ-----------------LPPN-- 263 (838)
Q Consensus 212 ~~r~~l~~~~-~~~~Vlvs~Gs~~~~---~~ll~~---l~--~~~~~~vv~G~~~~~-----------------lp~n-- 263 (838)
..++.+++++ +...++++.|..... ..++++ +. .+++.++++|..... +..+
T Consensus 171 ~~~~~~~~~~~~~~~~il~vGr~~~~Kg~~~li~a~~~l~~~~~~~~l~ivG~g~~~~~~~l~~~~~~~~~~~~l~~~v~ 250 (413)
T 3oy2_A 171 DARKLVGLSEYNDDVLFLNMNRNTARKRLDIYVLAAARFISKYPDAKVRFLCNSHHESKFDLHSIALRELVASGVDNVFT 250 (413)
T ss_dssp THHHHTTCGGGTTSEEEECCSCSSGGGTHHHHHHHHHHHHHHCTTCCEEEEEECCTTCSCCHHHHHHHHHHHHTCSCHHH
T ss_pred HHHHhcCCCcccCceEEEEcCCCchhcCcHHHHHHHHHHHHhCCCcEEEEEeCCcccchhhHHHHHHHHHHHcCcccccc
Confidence 5667777753 145677888887543 223332 21 256777777654321 3333
Q ss_pred -----eEECCCCC--CHHHHHhhcCEEEec----CChhhHHHHHHcCCcEEEEeCCCCCChHHHHHHHHHcCc-------
Q 003222 264 -----FIKLPKDA--YTPDFMAASDCMLGK----IGYGTVSEALAYKLPFVFVRRDYFNEEPFLRNMLEFYQG------- 325 (838)
Q Consensus 264 -----v~~~~~~~--~~pdlLa~adl~It~----gG~~Tv~Eal~~GvP~l~iP~~~~~EQ~~Na~~l~~~G~------- 325 (838)
+.+.++++ .++++|+.||++|.- +...++.||+++|+|+|+.+.. .+.+.+.....
T Consensus 251 ~l~~vv~~~g~~~~~~~~~~~~~adv~v~pS~~E~~~~~~lEAma~G~PvI~s~~~------g~~e~v~~~~~~~i~~~~ 324 (413)
T 3oy2_A 251 HLNKIMINRTVLTDERVDMMYNACDVIVNCSSGEGFGLCSAEGAVLGKPLIISAVG------GADDYFSGDCVYKIKPSA 324 (413)
T ss_dssp HHTTEEEECSCCCHHHHHHHHHHCSEEEECCSCCSSCHHHHHHHTTTCCEEEECCH------HHHHHSCTTTSEEECCCE
T ss_pred cccceeeccCcCCHHHHHHHHHhCCEEEeCCCcCCCCcHHHHHHHcCCCEEEcCCC------ChHHHHccCccccccccc
Confidence 66678765 577999999999952 3345899999999999997632 34444443322
Q ss_pred --------EE--EEecCCCChhhHHHHHHHHhhCC
Q 003222 326 --------GV--EMIRRDLLTGHWKPYLERAISLK 350 (838)
Q Consensus 326 --------g~--~l~~~~~~~~~l~~~l~~ll~~~ 350 (838)
|+ .+...+ ++.+.++| ++++++
T Consensus 325 ~~~~~~~~G~~gl~~~~d--~~~la~~i-~l~~~~ 356 (413)
T 3oy2_A 325 WISVDDRDGIGGIEGIID--VDDLVEAF-TFFKDE 356 (413)
T ss_dssp EEECTTTCSSCCEEEECC--HHHHHHHH-HHTTSH
T ss_pred ccccccccCcceeeCCCC--HHHHHHHH-HHhcCH
Confidence 54 565554 57899999 998765
|
| >3s28_A Sucrose synthase 1; glycosyltransferase, sucrose metabolism, sugar donar complex rossmann fold, GT-B fold, glycosyltansferase, UDP-glucose; HET: UDP LCN NHF; 2.80A {Arabidopsis thaliana} PDB: 3s27_A* 3s29_A* | Back alignment and structure |
|---|
Probab=98.43 E-value=4.8e-06 Score=100.82 Aligned_cols=124 Identities=13% Similarity=0.072 Sum_probs=80.5
Q ss_pred HHhCC--CCCCcEEEEEcCCCCch---hhhHHhh--C---CCCcEEEEeCCCCC----------------------CCCC
Q 003222 215 KELGI--EDDVKLLILNFGGQPAG---WKLKEEY--L---PSGWKCLVCGASDS----------------------QLPP 262 (838)
Q Consensus 215 ~~l~~--~~~~~~Vlvs~Gs~~~~---~~ll~~l--~---~~~~~~vv~G~~~~----------------------~lp~ 262 (838)
+.+++ ++++ .++++.|..... ..+++++ + .+++.++++|.... .+.+
T Consensus 562 ~~lg~l~~~~~-~vIl~vGRl~~~KGid~LIeA~~~L~~~~~~v~LvIvG~g~~~~~~~~e~~~~~~~L~~li~~lgL~~ 640 (816)
T 3s28_A 562 EHLCVLKDKKK-PILFTMARLDRVKNLSGLVEWYGKNTRLRELANLVVVGGDRRKESKDNEEKAEMKKMYDLIEEYKLNG 640 (816)
T ss_dssp TEESCBSCTTS-CEEEEECCCCTTTTHHHHHHHHHHCHHHHHHCEEEEECCCTTSCCCCHHHHHHHHHHHHHHHHTTCBB
T ss_pred HHhcccCCCCC-eEEEEEccCcccCCHHHHHHHHHHHHhhCCCeEEEEEeCCCcccccchhhHHHHHHHHHHHHHcCCCC
Confidence 44554 3344 466778877653 2233332 1 13578888887651 1457
Q ss_pred CeEECCCCCC------HHHHHh-hcCEEEec----CChhhHHHHHHcCCcEEEEeCCCCCChHHHHHHHHHcCcEEEEec
Q 003222 263 NFIKLPKDAY------TPDFMA-ASDCMLGK----IGYGTVSEALAYKLPFVFVRRDYFNEEPFLRNMLEFYQGGVEMIR 331 (838)
Q Consensus 263 nv~~~~~~~~------~pdlLa-~adl~It~----gG~~Tv~Eal~~GvP~l~iP~~~~~EQ~~Na~~l~~~G~g~~l~~ 331 (838)
+|.+++++.. ++.+|+ ++|+||.- +-..++.|||++|+|+|+.... ...+.+.....|+.++.
T Consensus 641 ~V~flG~~~~~v~~~eL~~~~~~aaDvfV~PS~~EgfglvllEAMA~G~PVIasd~G------G~~EiV~dg~~Gllv~p 714 (816)
T 3s28_A 641 QFRWISSQMDRVRNGELYRYICDTKGAFVQPALYEAFGLTVVEAMTCGLPTFATCKG------GPAEIIVHGKSGFHIDP 714 (816)
T ss_dssp BEEEECCCCCHHHHHHHHHHHHHTTCEEEECCSCBSSCHHHHHHHHTTCCEEEESSB------THHHHCCBTTTBEEECT
T ss_pred cEEEccCccccCCHHHHHHHHHhcCeEEEECCCccCccHHHHHHHHcCCCEEEeCCC------ChHHHHccCCcEEEeCC
Confidence 8999887753 335666 58999953 2336899999999999998632 23445556667988887
Q ss_pred CCCChhhHHHHHHHHh
Q 003222 332 RDLLTGHWKPYLERAI 347 (838)
Q Consensus 332 ~~~~~~~l~~~l~~ll 347 (838)
.+ ++.+.++|.+++
T Consensus 715 ~D--~e~LA~aI~~lL 728 (816)
T 3s28_A 715 YH--GDQAADTLADFF 728 (816)
T ss_dssp TS--HHHHHHHHHHHH
T ss_pred CC--HHHHHHHHHHHH
Confidence 66 467888886665
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=98.42 E-value=7.8e-07 Score=103.94 Aligned_cols=133 Identities=11% Similarity=0.020 Sum_probs=87.0
Q ss_pred HHHHHhCCCCCCcEEEEEcCCCCch--hhhHHh---hC--CCCcEEEEeC-CCCC-----------CCC-CCeEECCCCC
Q 003222 212 EVRKELGIEDDVKLLILNFGGQPAG--WKLKEE---YL--PSGWKCLVCG-ASDS-----------QLP-PNFIKLPKDA 271 (838)
Q Consensus 212 ~~r~~l~~~~~~~~Vlvs~Gs~~~~--~~ll~~---l~--~~~~~~vv~G-~~~~-----------~lp-~nv~~~~~~~ 271 (838)
..++.++++++ ++|+ ..|+.... ..+++. +. .+++.++++| .... .+. ++|+++|+++
T Consensus 366 ~~r~~~~~~~~-~~v~-~~g~~~~K~~~~li~a~~~l~~~~~~~~l~i~G~~g~~~~~l~~~~~~~~l~~~~v~~~g~~~ 443 (568)
T 2vsy_A 366 PSRTQCGLPEQ-GVVL-CCFNNSYKLNPQSMARMLAVLREVPDSVLWLLSGPGEADARLRAFAHAQGVDAQRLVFMPKLP 443 (568)
T ss_dssp CCTGGGTCCTT-SCEE-EECCCGGGCCHHHHHHHHHHHHHCTTCEEEEECCSTTHHHHHHHHHHHTTCCGGGEEEECCCC
T ss_pred CCccccCCCCC-CEEE-EeCCccccCCHHHHHHHHHHHHhCCCcEEEEecCCHHHHHHHHHHHHHcCCChhHEEeeCCCC
Confidence 35677887644 3444 44555432 123332 21 3577888888 4321 134 7899999985
Q ss_pred --CHHHHHhhcCEEEec---CChhhHHHHHHcCCcEEEEeCCCCCChHHHHHHHHHcCcEEEEecCCCChhhHHHHHHHH
Q 003222 272 --YTPDFMAASDCMLGK---IGYGTVSEALAYKLPFVFVRRDYFNEEPFLRNMLEFYQGGVEMIRRDLLTGHWKPYLERA 346 (838)
Q Consensus 272 --~~pdlLa~adl~It~---gG~~Tv~Eal~~GvP~l~iP~~~~~EQ~~Na~~l~~~G~g~~l~~~~~~~~~l~~~l~~l 346 (838)
.++++|+.+|+||.. ++.+++.||+++|+|+|++|...+.-. ..+..+...|....+.. +++.+.+++.++
T Consensus 444 ~~~~~~~~~~adv~v~ps~~~~g~~~lEAma~G~Pvv~~~g~~~~s~-~~~~~l~~~g~~e~v~~---~~~~la~~i~~l 519 (568)
T 2vsy_A 444 HPQYLARYRHADLFLDTHPYNAHTTASDALWTGCPVLTTPGETFAAR-VAGSLNHHLGLDEMNVA---DDAAFVAKAVAL 519 (568)
T ss_dssp HHHHHHHGGGCSEEECCSSSCCSHHHHHHHHTTCCEEBCCCSSGGGS-HHHHHHHHHTCGGGBCS---SHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCEEeeCCCCCCcHHHHHHHhCCCCEEeccCCCchHH-HHHHHHHHCCChhhhcC---CHHHHHHHHHHH
Confidence 677999999999942 455789999999999999874322111 23456677777655543 467888899998
Q ss_pred hhCC
Q 003222 347 ISLK 350 (838)
Q Consensus 347 l~~~ 350 (838)
++++
T Consensus 520 ~~~~ 523 (568)
T 2vsy_A 520 ASDP 523 (568)
T ss_dssp HHCH
T ss_pred hcCH
Confidence 8765
|
| >3lto_A Mevalonate diphosphate decarboxylase; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.27A {Legionella pneumophila} | Back alignment and structure |
|---|
Probab=98.42 E-value=1.9e-06 Score=93.01 Aligned_cols=74 Identities=20% Similarity=0.158 Sum_probs=62.4
Q ss_pred HHHHHHHhCCCCCCCEEEEEEeCCCCCCCCChHHHHHHHHH----HHHHHHhCCCC-CHHHHHHHHHHHHhhhcCCCCCh
Q 003222 617 ILVLMTELGVRFEDSISMLVSSAVPEGKGVSSSASVEVASM----SAIAAAHGLNI-HPRDLALLCQKVENHIVGAPCGV 691 (838)
Q Consensus 617 i~~~~~~~g~~~~~g~~i~i~s~iP~g~GLgSSAA~~va~~----~al~~l~~~~l-~~~ela~~a~~~E~~~~G~~~G~ 691 (838)
+..++++.+.. .|++|.+.++||.++|||||||..+|++ .|++.++|+++ +++|++++|..+| |
T Consensus 80 i~~~l~~~~~~--~gv~I~~~n~IP~aaGLgSSAA~~aA~~~~~~~aln~l~gl~l~s~~eL~~lA~~gs--------G- 148 (323)
T 3lto_A 80 LVRLKEYFGYV--GGFLIQSSNNFPHSSGLASSASSFAALTKCASIALSELTQKPLPSIDEQAQLSRLGS--------G- 148 (323)
T ss_dssp HHHHHHHHTCC--CCEEEEEEESSCTTTTCCCHHHHHHHHHHHHHHHHHHHHTCCCCCHHHHHHHHHTTC--------G-
T ss_pred HHHHHHHhCCC--CCEEEEEEeCCCCccCcchhHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhC--------C-
Confidence 45566677643 6999999999999999999999999999 99999999999 9999999997543 2
Q ss_pred hhHHHhhcCCC
Q 003222 692 MDQMASACGEA 702 (838)
Q Consensus 692 mDq~a~~~G~~ 702 (838)
+-..|++||.
T Consensus 149 -saa~si~GG~ 158 (323)
T 3lto_A 149 -SSCRSFYAPW 158 (323)
T ss_dssp -GGGGGGSCSE
T ss_pred -CcchhhhCCE
Confidence 3346999994
|
| >2hke_A Diphosphomevalonate decarboxylase, putative; mevalonate diphosphate decarboxylase, lyase; 1.80A {Trypanosoma brucei} | Back alignment and structure |
|---|
Probab=98.37 E-value=3.4e-06 Score=93.74 Aligned_cols=80 Identities=21% Similarity=0.242 Sum_probs=62.0
Q ss_pred hHHHHHHHHHHHHHhCCC-CCCCEEEEEEeCCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhhhcCCC
Q 003222 610 AAYVAGTILVLMTELGVR-FEDSISMLVSSAVPEGKGVSSSASVEVASMSAIAAAHGLNIHPRDLALLCQKVENHIVGAP 688 (838)
Q Consensus 610 ~~y~~g~i~~~~~~~g~~-~~~g~~i~i~s~iP~g~GLgSSAA~~va~~~al~~l~~~~l~~~ela~~a~~~E~~~~G~~ 688 (838)
.+.+..++..+.+..+.. ...|++|.+.++||.++|||||||..+|++.|++.++|++ .+++++|...|
T Consensus 75 ~~~v~~~~~~~~~~~~~~~~~~~v~I~~~~~IP~aaGLGSSAA~aaA~l~Aln~l~gl~---~eL~~lA~~g~------- 144 (380)
T 2hke_A 75 TPRVQSMLLHLRSTCPEELKNKKVNIVSENNFPTAAGMASSASGYCAMSAALIRAFKST---TNVSMLARLGS------- 144 (380)
T ss_dssp CHHHHHHHHHHHTSSCHHHHTCEEEEEEEECSCTTSCCCHHHHHHHHHHHHHHHHHTCS---SCHHHHHHHHC-------
T ss_pred HHHHHHHHHHHHHHhcccCCCCCEEEEEeccCCCccCcchHHHHHHHHHHHHHHHcCCH---HHHHHHHhhcC-------
Confidence 356666656554333430 0268999999999999999999999999999999999987 78889987654
Q ss_pred CChhhHHHhhcCCC
Q 003222 689 CGVMDQMASACGEA 702 (838)
Q Consensus 689 ~G~mDq~a~~~G~~ 702 (838)
| |...|++||.
T Consensus 145 -G--sva~s~~GG~ 155 (380)
T 2hke_A 145 -G--SACRSAFGGF 155 (380)
T ss_dssp -G--GGGGGGSSSE
T ss_pred -c--ceeeehhCCe
Confidence 2 4567899994
|
| >2x0d_A WSAF; GT4 family, transferase; HET: MSE; 2.28A {Geobacillus stearothermophilus} PDB: 2x0f_A* 2x0e_A* | Back alignment and structure |
|---|
Probab=98.33 E-value=3.9e-06 Score=94.36 Aligned_cols=95 Identities=12% Similarity=0.058 Sum_probs=69.7
Q ss_pred CcEEEEeCCCCCC----CCCCeEECCCCC--CHHHHHhhcCEEEecC---Ch-hhHHHHHHcCCcEEEEeCCCCCChHHH
Q 003222 247 GWKCLVCGASDSQ----LPPNFIKLPKDA--YTPDFMAASDCMLGKI---GY-GTVSEALAYKLPFVFVRRDYFNEEPFL 316 (838)
Q Consensus 247 ~~~~vv~G~~~~~----lp~nv~~~~~~~--~~pdlLa~adl~It~g---G~-~Tv~Eal~~GvP~l~iP~~~~~EQ~~N 316 (838)
++.++++|..... +..+|+++++++ .++++|+.||+||.-+ |+ .++.|||++|+|+|+ ...+..|
T Consensus 276 ~~~l~ivG~~~~~~~l~~~~~v~f~G~~~~~~l~~~~~~adv~v~pS~~E~~g~~~lEAmA~G~PVV~-~~~g~~e---- 350 (413)
T 2x0d_A 276 EWKIISVGEKHKDIALGKGIHLNSLGKLTLEDYADLLKRSSIGISLMISPHPSYPPLEMAHFGLRVIT-NKYENKD---- 350 (413)
T ss_dssp GCEEEEEESCCCCEEEETTEEEEEEESCCHHHHHHHHHHCCEEECCCSSSSCCSHHHHHHHTTCEEEE-ECBTTBC----
T ss_pred ceEEEEEcCCchhhhcCCcCcEEEcCCCCHHHHHHHHHhCCEEEEecCCCCCCcHHHHHHhCCCcEEE-eCCCcch----
Confidence 3788888875432 456888888863 5779999999999532 33 478999999999999 4333333
Q ss_pred HHHHHHcCcEEEEecCCCChhhHHHHHHHHhhCC
Q 003222 317 RNMLEFYQGGVEMIRRDLLTGHWKPYLERAISLK 350 (838)
Q Consensus 317 a~~l~~~G~g~~l~~~~~~~~~l~~~l~~ll~~~ 350 (838)
.++....|+.++..+ ++.+.++|.++++++
T Consensus 351 --~v~~~~~G~lv~~~d--~~~la~ai~~ll~~~ 380 (413)
T 2x0d_A 351 --LSNWHSNIVSLEQLN--PENIAETLVELCMSF 380 (413)
T ss_dssp --GGGTBTTEEEESSCS--HHHHHHHHHHHHHHT
T ss_pred --hhhcCCCEEEeCCCC--HHHHHHHHHHHHcCH
Confidence 244455788887766 578999999999876
|
| >2xci_A KDO-transferase, 3-deoxy-D-manno-2-octulosonic acid transferase; KDTA, GSEA, glycosyltransferase superfamily B,; HET: PG4; 2.00A {Aquifex aeolicus} PDB: 2xcu_A* | Back alignment and structure |
|---|
Probab=98.17 E-value=0.00012 Score=81.06 Aligned_cols=85 Identities=14% Similarity=0.194 Sum_probs=61.4
Q ss_pred CCeEECCCCCCHHHHHhhcCEEEe-----cCChhhHHHHHHcCCcEEEEeCCCCCChHHHHHHHHHcCcEEEEecCCCCh
Q 003222 262 PNFIKLPKDAYTPDFMAASDCMLG-----KIGYGTVSEALAYKLPFVFVRRDYFNEEPFLRNMLEFYQGGVEMIRRDLLT 336 (838)
Q Consensus 262 ~nv~~~~~~~~~pdlLa~adl~It-----~gG~~Tv~Eal~~GvP~l~iP~~~~~EQ~~Na~~l~~~G~g~~l~~~~~~~ 336 (838)
.+|.+.++..+++++|+.||+++. .+|..++.||+++|+|+|+-|.. .......+.+.+.|.++.. .+ +
T Consensus 260 ~~v~~~~~~~dl~~~y~~aDv~vl~ss~~e~gg~~~lEAmA~G~PVI~~~~~--~~~~e~~~~~~~~G~l~~~--~d--~ 333 (374)
T 2xci_A 260 GDVILVDRFGILKELYPVGKIAIVGGTFVNIGGHNLLEPTCWGIPVIYGPYT--HKVNDLKEFLEKEGAGFEV--KN--E 333 (374)
T ss_dssp SSEEECCSSSCHHHHGGGEEEEEECSSSSSSCCCCCHHHHTTTCCEEECSCC--TTSHHHHHHHHHTTCEEEC--CS--H
T ss_pred CcEEEECCHHHHHHHHHhCCEEEECCcccCCCCcCHHHHHHhCCCEEECCCc--cChHHHHHHHHHCCCEEEe--CC--H
Confidence 357777877899999999999664 23457899999999999986532 2223445555667877554 33 4
Q ss_pred hhHHHHHHHHhhCCCCc
Q 003222 337 GHWKPYLERAISLKPCY 353 (838)
Q Consensus 337 ~~l~~~l~~ll~~~~~~ 353 (838)
+.+.++|.+++++ ...
T Consensus 334 ~~La~ai~~ll~d-~~r 349 (374)
T 2xci_A 334 TELVTKLTELLSV-KKE 349 (374)
T ss_dssp HHHHHHHHHHHHS-CCC
T ss_pred HHHHHHHHHHHhH-HHH
Confidence 6889999999987 443
|
| >2f9f_A First mannosyl transferase (WBAZ-1); alpha-beta protein, structural genomics, PSI, protein struct initiative; 1.80A {Archaeoglobus fulgidus} SCOP: c.87.1.8 | Back alignment and structure |
|---|
Probab=97.98 E-value=3e-05 Score=76.02 Aligned_cols=123 Identities=14% Similarity=-0.019 Sum_probs=85.6
Q ss_pred CCCCCcEEEEEcCCCCch---hhhHHhhCC-CCcEEEEeCCCCC-----------C--CCCCeEECCCCCC--HHHHHhh
Q 003222 219 IEDDVKLLILNFGGQPAG---WKLKEEYLP-SGWKCLVCGASDS-----------Q--LPPNFIKLPKDAY--TPDFMAA 279 (838)
Q Consensus 219 ~~~~~~~Vlvs~Gs~~~~---~~ll~~l~~-~~~~~vv~G~~~~-----------~--lp~nv~~~~~~~~--~pdlLa~ 279 (838)
++.+++ ++++.|+.... ..+++.+.. +++.++++|.... . +++||+++++++. ++++|+.
T Consensus 19 ~~~~~~-~i~~~G~~~~~Kg~~~li~a~~~l~~~~l~i~G~~~~~~~l~~~~~~~~~~l~~~v~~~g~~~~~e~~~~~~~ 97 (177)
T 2f9f_A 19 FKCYGD-FWLSVNRIYPEKRIELQLEVFKKLQDEKLYIVGWFSKGDHAERYARKIMKIAPDNVKFLGSVSEEELIDLYSR 97 (177)
T ss_dssp CCCCCS-CEEEECCSSGGGTHHHHHHHHHHCTTSCEEEEBCCCTTSTHHHHHHHHHHHSCTTEEEEESCCHHHHHHHHHH
T ss_pred cCCCCC-EEEEEeccccccCHHHHHHHHHhCCCcEEEEEecCccHHHHHHHHHhhhcccCCcEEEeCCCCHHHHHHHHHh
Confidence 444444 45677777653 223332211 5677777776543 1 4569999998876 7899999
Q ss_pred cCEEEe---c-CChhhHHHHHHcCCcEEEEeCCCCCChHHHHHHHHHcCcEEEEecCCCChhhHHHHHHHHhhCCC
Q 003222 280 SDCMLG---K-IGYGTVSEALAYKLPFVFVRRDYFNEEPFLRNMLEFYQGGVEMIRRDLLTGHWKPYLERAISLKP 351 (838)
Q Consensus 280 adl~It---~-gG~~Tv~Eal~~GvP~l~iP~~~~~EQ~~Na~~l~~~G~g~~l~~~~~~~~~l~~~l~~ll~~~~ 351 (838)
||++|. . +...++.||+++|+|+|+.+. ..+.+.++..+.|+.+ ..+ .+.+.++|.++++++.
T Consensus 98 adi~v~ps~~e~~~~~~~Eama~G~PvI~~~~------~~~~e~i~~~~~g~~~-~~d--~~~l~~~i~~l~~~~~ 164 (177)
T 2f9f_A 98 CKGLLCTAKDEDFGLTPIEAMASGKPVIAVNE------GGFKETVINEKTGYLV-NAD--VNEIIDAMKKVSKNPD 164 (177)
T ss_dssp CSEEEECCSSCCSCHHHHHHHHTTCCEEEESS------HHHHHHCCBTTTEEEE-CSC--HHHHHHHHHHHHHCTT
T ss_pred CCEEEeCCCcCCCChHHHHHHHcCCcEEEeCC------CCHHHHhcCCCccEEe-CCC--HHHHHHHHHHHHhCHH
Confidence 999997 2 333589999999999999762 3455666666788888 444 5789999999998773
|
| >2bfw_A GLGA glycogen synthase; glycosyltransferase family 5 UDP/ADP-glucose-glycogen syntha rossman folds, transferase; 1.8A {Pyrococcus abyssi} SCOP: c.87.1.8 | Back alignment and structure |
|---|
Probab=97.84 E-value=0.00011 Score=72.93 Aligned_cols=129 Identities=12% Similarity=0.099 Sum_probs=92.0
Q ss_pred hHHHHHHhCCCCCCcEEEEEcCCCC-ch---hhhHH---hhC--C--CCcEEEEeCCCC--C--C-------CCCCeEE-
Q 003222 210 RKEVRKELGIEDDVKLLILNFGGQP-AG---WKLKE---EYL--P--SGWKCLVCGASD--S--Q-------LPPNFIK- 266 (838)
Q Consensus 210 ~~~~r~~l~~~~~~~~Vlvs~Gs~~-~~---~~ll~---~l~--~--~~~~~vv~G~~~--~--~-------lp~nv~~- 266 (838)
+..+++.++++ +.+ ++++.|+.. .. ..+++ .+. . +++.++++|... . . ++ ||++
T Consensus 24 ~~~~r~~~~~~-~~~-~i~~~G~~~~~~K~~~~li~a~~~l~~~~~~~~~~l~i~G~~~~~~~~~l~~~~~~~~-~v~~~ 100 (200)
T 2bfw_A 24 KKSLLSKFGMD-EGV-TFMFIGRFDRGQKGVDVLLKAIEILSSKKEFQEMRFIIIGKGDPELEGWARSLEEKHG-NVKVI 100 (200)
T ss_dssp HHHHHHHTTCC-SCE-EEEEESCBCSSSSCHHHHHHHHHHHTTSGGGGGEEEEEECCBCHHHHHHHHHHHHHCT-TEEEE
T ss_pred HHHHHHHcCCC-CCC-EEEEeeccccccCCHHHHHHHHHHHHhhccCCCeEEEEECCCChHHHHHHHHHHHhcC-CEEEE
Confidence 55788889986 444 667778777 42 22232 332 2 467888888765 1 1 34 9999
Q ss_pred CCCCC--CHHHHHhhcCEEEecC---C-hhhHHHHHHcCCcEEEEeCCCCCChHHHHHHHHHcCcEEEEecCCCChhhHH
Q 003222 267 LPKDA--YTPDFMAASDCMLGKI---G-YGTVSEALAYKLPFVFVRRDYFNEEPFLRNMLEFYQGGVEMIRRDLLTGHWK 340 (838)
Q Consensus 267 ~~~~~--~~pdlLa~adl~It~g---G-~~Tv~Eal~~GvP~l~iP~~~~~EQ~~Na~~l~~~G~g~~l~~~~~~~~~l~ 340 (838)
.++++ .++++|+.||++|... | ..++.||+++|+|+|+... ..+.+.+ ..+.|..++..+ .+.+.
T Consensus 101 ~g~~~~~~~~~~~~~ad~~l~ps~~e~~~~~~~Ea~a~G~PvI~~~~------~~~~e~~-~~~~g~~~~~~~--~~~l~ 171 (200)
T 2bfw_A 101 TEMLSREFVRELYGSVDFVIIPSYFEPFGLVALEAMCLGAIPIASAV------GGLRDII-TNETGILVKAGD--PGELA 171 (200)
T ss_dssp CSCCCHHHHHHHHTTCSEEEECCSCCSSCHHHHHHHHTTCEEEEESC------HHHHHHC-CTTTCEEECTTC--HHHHH
T ss_pred eccCCHHHHHHHHHHCCEEEECCCCCCccHHHHHHHHCCCCEEEeCC------CChHHHc-CCCceEEecCCC--HHHHH
Confidence 99987 6789999999999643 2 3689999999999999752 2455556 667788887655 46889
Q ss_pred HHHHHHhh-CC
Q 003222 341 PYLERAIS-LK 350 (838)
Q Consensus 341 ~~l~~ll~-~~ 350 (838)
++|.++++ ++
T Consensus 172 ~~i~~l~~~~~ 182 (200)
T 2bfw_A 172 NAILKALELSR 182 (200)
T ss_dssp HHHHHHHHCCH
T ss_pred HHHHHHHhcCH
Confidence 99999987 65
|
| >3f0n_A Mevalonate pyrophosphate decarboxylase; cholesterol biosynthesis, lipid synthesis, lyase, steroid biosynthesis, sterol biosynthesis; 1.90A {Mus musculus} PDB: 3d4j_A | Back alignment and structure |
|---|
Probab=97.69 E-value=6.6e-05 Score=82.86 Aligned_cols=60 Identities=20% Similarity=0.248 Sum_probs=51.2
Q ss_pred CCEEEEEEeCCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhhhcCCCCChhhHHHhhcCCC
Q 003222 630 DSISMLVSSAVPEGKGVSSSASVEVASMSAIAAAHGLNIHPRDLALLCQKVENHIVGAPCGVMDQMASACGEA 702 (838)
Q Consensus 630 ~g~~i~i~s~iP~g~GLgSSAA~~va~~~al~~l~~~~l~~~ela~~a~~~E~~~~G~~~G~mDq~a~~~G~~ 702 (838)
.|++|.+.++||.++|||||||..+|++.|++.++|+ +.+++++|..++ | +-..|++||.
T Consensus 122 ~~~~I~~~~~iP~aaGLgSSaA~~aA~~~a~n~l~~l---~~el~~lA~~~s----G------s~~~s~~GG~ 181 (414)
T 3f0n_A 122 YKVHVASVNNFPTAAGLASSAAGYACLAYTLAQVYGV---EGDLSEVARRGS----G------SACRSLYGGF 181 (414)
T ss_dssp SCEEEEEEECCCGGGCCCHHHHHHHHHHHHHHHHHTC---CSCCHHHHHHHC----G------GGGGGGSSSE
T ss_pred CcEEEEEEeCCCCCcCcchhHHHHHHHHHHHHHHhCC---hHHHHHHHHHhC----C------CcchHhhCCE
Confidence 4899999999999999999999999999999999998 367888887653 2 2356899994
|
| >3qhp_A Type 1 capsular polysaccharide biosynthesis prote (CAPJ); rossmann fold, glycosyltransferase, transferase; 1.50A {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=96.99 E-value=0.0013 Score=63.01 Aligned_cols=117 Identities=9% Similarity=-0.060 Sum_probs=74.1
Q ss_pred cEEEEEcCCCCch---hhhHHhh--CC--CCcEEEEeCCCCCC---------CCCCeEECCCCC--CHHHHHhhcCEEEe
Q 003222 224 KLLILNFGGQPAG---WKLKEEY--LP--SGWKCLVCGASDSQ---------LPPNFIKLPKDA--YTPDFMAASDCMLG 285 (838)
Q Consensus 224 ~~Vlvs~Gs~~~~---~~ll~~l--~~--~~~~~vv~G~~~~~---------lp~nv~~~~~~~--~~pdlLa~adl~It 285 (838)
++++++.|..... ..+++++ +. +++.++++|..... ++.++++ ++.+ .++++|+.||++|.
T Consensus 2 ~~~i~~~G~~~~~Kg~~~li~a~~~l~~~~~~~l~i~G~g~~~~~~~~~~~~~~~~v~~-g~~~~~~~~~~~~~adv~v~ 80 (166)
T 3qhp_A 2 PFKIAMVGRYSNEKNQSVLIKAVALSKYKQDIVLLLKGKGPDEKKIKLLAQKLGVKAEF-GFVNSNELLEILKTCTLYVH 80 (166)
T ss_dssp CEEEEEESCCSTTTTHHHHHHHHHTCTTGGGEEEEEECCSTTHHHHHHHHHHHTCEEEC-CCCCHHHHHHHHTTCSEEEE
T ss_pred ceEEEEEeccchhcCHHHHHHHHHHhccCCCeEEEEEeCCccHHHHHHHHHHcCCeEEE-eecCHHHHHHHHHhCCEEEE
Confidence 5678888887653 2233332 22 46678888865421 2347777 8764 45689999999996
Q ss_pred c----CChhhHHHHHHcCC-cEEEEeCCCCCChHHHHHHHHHcCcEEEEecCCCChhhHHHHHHHHhhCC
Q 003222 286 K----IGYGTVSEALAYKL-PFVFVRRDYFNEEPFLRNMLEFYQGGVEMIRRDLLTGHWKPYLERAISLK 350 (838)
Q Consensus 286 ~----gG~~Tv~Eal~~Gv-P~l~iP~~~~~EQ~~Na~~l~~~G~g~~l~~~~~~~~~l~~~l~~ll~~~ 350 (838)
- +...++.||+++|+ |+|+........+ .+...+. .+...+ ++.+.++|.++++++
T Consensus 81 ps~~e~~~~~~~Eama~G~vPvi~~~~~~~~~~-----~~~~~~~--~~~~~~--~~~l~~~i~~l~~~~ 141 (166)
T 3qhp_A 81 AANVESEAIACLEAISVGIVPVIANSPLSATRQ-----FALDERS--LFEPNN--AKDLSAKIDWWLENK 141 (166)
T ss_dssp CCCSCCCCHHHHHHHHTTCCEEEECCTTCGGGG-----GCSSGGG--EECTTC--HHHHHHHHHHHHHCH
T ss_pred CCcccCccHHHHHHHhcCCCcEEeeCCCCchhh-----hccCCce--EEcCCC--HHHHHHHHHHHHhCH
Confidence 3 33368999999997 9999442222111 1222233 454444 578899999998765
|
| >3tov_A Glycosyl transferase family 9; structural genomics, PSI-BIOL protein structure initiative, midwest center for structural genomics, MCSG; 2.98A {Veillonella parvula} | Back alignment and structure |
|---|
Probab=96.98 E-value=0.039 Score=60.07 Aligned_cols=250 Identities=13% Similarity=0.139 Sum_probs=123.6
Q ss_pred CceEEEEEeecCCCcccHHHHHHHHHHHHHC--CCeEEEEeCCCCcccccccC-CCcee-eeeeccCCCcccccccccCh
Q 003222 13 SKHLVFAYYVTGHGFGHATRVVEVVRNLISA--GHDVHVVTGAPDFVFTSEIQ-SPRLF-IRKVLLDCGAVQADALTVDR 88 (838)
Q Consensus 13 m~~~~Il~~v~g~G~GHv~r~laLA~~L~~~--Gh~V~~v~~~~~~~~~~~i~-~~~~~-~~~~~~~~g~~~~~~~~~~~ 88 (838)
+...+||++ ...+.|-+.-+..+.++|+++ +.+|++++... +...++ .+.+. +.. .+.
T Consensus 6 l~~~~iLvi-~~~~lGD~i~~~P~l~~L~~~~P~a~I~~l~~~~---~~~l~~~~p~vd~vi~--------------~~~ 67 (349)
T 3tov_A 6 LDYKRIVVT-FLMHLGDVILTTPFLEVLRKAAPHSHITYVIDEK---LQQVMEYNPNIDELIV--------------VDK 67 (349)
T ss_dssp CTTCEEEEE-CCCCHHHHHTTHHHHHHHHHHCTTSEEEEEEEGG---GGGGTSSCTTCSEEEE--------------ECC
T ss_pred CCCCEEEEE-ecCcccHHHHHHHHHHHHHHHCCCCEEEEEECcc---hhHHHhcCCCccEEEE--------------eCc
Confidence 334566554 467899999999999999997 78999987743 111111 11111 111 010
Q ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHhcCCC-cEEEECC-CchHHHHHHHhCCcE-EEEecCchhHHHHhhhhh---ccc
Q 003222 89 LASLEKYSETAVAPRKSILKDEVEWLNSIKA-DLVVSDV-VPVACRAAADAGIRS-VCVTNFSWDFIYAEYVMA---AGH 162 (838)
Q Consensus 89 ~~~l~~~~~~~~~~~~~~l~~~~~~L~~~kP-DlVVsD~-~~~~~~aA~~lgIP~-V~is~~~~~~i~~~~~~~---~~~ 162 (838)
......+.. +.+....|++.++ |+||.-+ ..-..+++...++|. +.+....+...|....+. ..+
T Consensus 68 ~~~~~~~~~---------~~~l~~~Lr~~~y~D~vidl~~~~rs~~l~~~~~a~~riG~~~~~~~~~~~~~~~~~~~~~h 138 (349)
T 3tov_A 68 KGRHNSISG---------LNEVAREINAKGKTDIVINLHPNERTSYLAWKIHAPITTGMSHFLFRPFMTKYTRLDRKTRH 138 (349)
T ss_dssp SSHHHHHHH---------HHHHHHHHHHHCCCCEEEECCCSHHHHHHHHHHCCSEEEECCCTTTGGGCSEECCCCTTTSC
T ss_pred ccccccHHH---------HHHHHHHHhhCCCCeEEEECCCChHHHHHHHHhCCCeEEecCCCCccccccccccCCCCCcc
Confidence 000011111 1123445778899 9999654 444566777889996 444332221111111110 011
Q ss_pred chHHHHHHHHhhccccceEEecCCCCCCCCC-CceeecCcccccCCcChHHHHHHhCCCCCCcEEEEEcCCCCch--h--
Q 003222 163 HHRSIVWQIAEDYSHCEFLIRLPGYCPMPAF-RDVIDVPLVVRRLHKSRKEVRKELGIEDDVKLLILNFGGQPAG--W-- 237 (838)
Q Consensus 163 ~~~~i~~~l~~~y~~~d~ll~~~~~~~~p~~-~~v~~ip~~~~~~~~~~~~~r~~l~~~~~~~~Vlvs~Gs~~~~--~-- 237 (838)
..+...+ +.+... .+. .+.. ..+ .++... ....+++.+.+++++++++|.+..|+.... +
T Consensus 139 ~v~r~~~-ll~~lg-------~~~---~~~~~~~l-~~~~~~---~~~~~~~l~~~g~~~~~~~i~i~pga~~~~k~wp~ 203 (349)
T 3tov_A 139 AADMYIN-VLEQLG-------VTD---TSNSGLHI-EICEEW---RCQAQEFYSSHGLTDTDILIGFNIGSAVPEKRWPA 203 (349)
T ss_dssp HHHHHHH-HHHHTT-------CCC---CCCCCCCC-CCCHHH---HHHHHHHHHHTTCCTTCCEEEEECCCSSGGGCCCH
T ss_pred HHHHHHH-HHHHhC-------CCc---cCCCceee-eCCHHH---HHHHHHHHHHcCCCCCCCEEEEeCCCCCccCCCCH
Confidence 1111111 111111 000 0000 000 011000 000112334456666788999998875431 2
Q ss_pred ----hhHHhhCCCCcEEEEeCCCCCC---------CCCCeEE-CCCCC--CHHHHHhhcCEEEec-CChhhHHHHHHcCC
Q 003222 238 ----KLKEEYLPSGWKCLVCGASDSQ---------LPPNFIK-LPKDA--YTPDFMAASDCMLGK-IGYGTVSEALAYKL 300 (838)
Q Consensus 238 ----~ll~~l~~~~~~~vv~G~~~~~---------lp~nv~~-~~~~~--~~pdlLa~adl~It~-gG~~Tv~Eal~~Gv 300 (838)
++.+.+...++.++++|...+. ++.++.. .+... .+..+|+.||++||. +| ++.=|.++|+
T Consensus 204 ~~~~~l~~~l~~~g~~vvl~g~~~e~~~~~~i~~~~~~~~~~l~g~~sl~e~~ali~~a~~~i~~DsG--~~HlAaa~g~ 281 (349)
T 3tov_A 204 ERFAHVADYFGRLGYKTVFFGGPMDLEMVQPVVEQMETKPIVATGKFQLGPLAAAMNRCNLLITNDSG--PMHVGISQGV 281 (349)
T ss_dssp HHHHHHHHHHHHHTCEEEECCCTTTHHHHHHHHHTCSSCCEECTTCCCHHHHHHHHHTCSEEEEESSH--HHHHHHTTTC
T ss_pred HHHHHHHHHHHhCCCeEEEEeCcchHHHHHHHHHhcccccEEeeCCCCHHHHHHHHHhCCEEEECCCC--HHHHHHhcCC
Confidence 2223343346777777654321 3444433 33322 234788899999997 44 3333899999
Q ss_pred cEEEEe
Q 003222 301 PFVFVR 306 (838)
Q Consensus 301 P~l~iP 306 (838)
|+|++=
T Consensus 282 P~v~lf 287 (349)
T 3tov_A 282 PIVALY 287 (349)
T ss_dssp CEEEEC
T ss_pred CEEEEE
Confidence 999984
|
| >1psw_A ADP-heptose LPS heptosyltransferase II; structural genomics, NYSGXRC, LPS biosynthetic pathway, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.87.1.7 | Back alignment and structure |
|---|
Probab=96.83 E-value=0.032 Score=60.21 Aligned_cols=254 Identities=10% Similarity=0.036 Sum_probs=123.5
Q ss_pred EEEEeecCCCcccHHHHHHHHHHHHHC--CCeEEEEeCCCCcccccccC-CCce-eeeeeccCCCcccccccccChHHHH
Q 003222 17 VFAYYVTGHGFGHATRVVEVVRNLISA--GHDVHVVTGAPDFVFTSEIQ-SPRL-FIRKVLLDCGAVQADALTVDRLASL 92 (838)
Q Consensus 17 ~Il~~v~g~G~GHv~r~laLA~~L~~~--Gh~V~~v~~~~~~~~~~~i~-~~~~-~~~~~~~~~g~~~~~~~~~~~~~~l 92 (838)
+||+ +.+.+.|-+.-+..+.++|+++ +.+|++++... +...+. .+.+ .+.. . +.....
T Consensus 2 kILi-i~~~~~GD~i~~~p~l~~Lk~~~P~~~i~~l~~~~---~~~l~~~~p~i~~v~~--~------------~~~~~~ 63 (348)
T 1psw_A 2 KILV-IGPSWVGDMMMSQSLYRTLQARYPQAIIDVMAPAW---CRPLLSRMPEVNEAIP--M------------PLGHGA 63 (348)
T ss_dssp EEEE-ECCSSHHHHHHHHHHHHHHHHHSTTCEEEEEECGG---GHHHHTTCTTEEEEEE--C------------------
T ss_pred eEEE-EeccccCHHHHHHHHHHHHHHHCCCCEEEEEECcc---hhHHHhcCCccCEEEE--e------------cCCccc
Confidence 5655 4566789888899999999987 88999998742 111111 1211 1111 0 000000
Q ss_pred HHHHHHhhccHHHHHHHHHHHHhcCCCcEEEECC-CchHHHHHHHhCCcE-EEEecC-chhHHHHhhhhhcccchHHHHH
Q 003222 93 EKYSETAVAPRKSILKDEVEWLNSIKADLVVSDV-VPVACRAAADAGIRS-VCVTNF-SWDFIYAEYVMAAGHHHRSIVW 169 (838)
Q Consensus 93 ~~~~~~~~~~~~~~l~~~~~~L~~~kPDlVVsD~-~~~~~~aA~~lgIP~-V~is~~-~~~~i~~~~~~~~~~~~~~i~~ 169 (838)
. .+. ...+..+.|++.+||+||.-. ..-...++...++|. +.+... .|.. +...............+
T Consensus 64 ----~----~~~-~~~~l~~~l~~~~~D~vid~~~~~~sa~~~~~~~~~~~ig~~~~~~~~~-~~~~~~~~~~~~~~~~~ 133 (348)
T 1psw_A 64 ----L----EIG-ERRKLGHSLREKRYDRAYVLPNSFKSALVPLFAGIPHRTGWRGEMRYGL-LNDVRVLDKEAWPLMVE 133 (348)
T ss_dssp ---------CHH-HHHHHHHHTTTTTCSEEEECSCCSGGGHHHHHTTCSEEEEECTTTCTTT-CTEEECCCTTTCCSHHH
T ss_pred ----c----chH-HHHHHHHHHHhcCCCEEEECCCChHHHHHHHHhCCCEEeccCCCccccc-ccccccCCCCCCchHHH
Confidence 0 011 122345567889999999433 344556777889997 444321 1110 11100000000000122
Q ss_pred HHHhhccccceEEecCCCCCCCCCCceeecCcccccCCcChHHHHHHhCCCCCCcEEEEEcCC-CCc-h-h------hhH
Q 003222 170 QIAEDYSHCEFLIRLPGYCPMPAFRDVIDVPLVVRRLHKSRKEVRKELGIEDDVKLLILNFGG-QPA-G-W------KLK 240 (838)
Q Consensus 170 ~l~~~y~~~d~ll~~~~~~~~p~~~~v~~ip~~~~~~~~~~~~~r~~l~~~~~~~~Vlvs~Gs-~~~-~-~------~ll 240 (838)
+....... ++..... ..++.....|.+. .+....+++++.++++.++++|.+..|+ ... . + ++.
T Consensus 134 ~~~~l~~~----~g~~~~~--~~~~~~~~~p~l~-~~~~~~~~~~~~~~~~~~~~~i~l~pga~~~~~k~wp~~~~~~l~ 206 (348)
T 1psw_A 134 RYIALAYD----KGIMRTA--QDLPQPLLWPQLQ-VSEGEKSYTCNQFSLSSERPMIGFCPGAEFGPAKRWPHYHYAELA 206 (348)
T ss_dssp HHHHTTSC----GGGCSSG--GGSCSSCCCCCCC-CCHHHHHHHHHHTTCCSSSCEEEEECCCTTCGGGSCCHHHHHHHH
T ss_pred HHHHHHhh----ccccccc--ccCCcccCCceee-cCHHHHHHHHHHhCCCCCCcEEEEECCCCccccCCCCHHHHHHHH
Confidence 21111110 0000000 0000000111111 0111234566777876577889999888 322 1 2 222
Q ss_pred HhhCCCCcEEEEeCCCCCC---------CC----CCeE-ECCCCC--CHHHHHhhcCEEEecCChhhHHHHHHcCCcEEE
Q 003222 241 EEYLPSGWKCLVCGASDSQ---------LP----PNFI-KLPKDA--YTPDFMAASDCMLGKIGYGTVSEALAYKLPFVF 304 (838)
Q Consensus 241 ~~l~~~~~~~vv~G~~~~~---------lp----~nv~-~~~~~~--~~pdlLa~adl~It~gG~~Tv~Eal~~GvP~l~ 304 (838)
+.+...++.++++|...+. ++ .++. +.+..+ .+..+|+.||++||.-. |++..|.++|+|+|+
T Consensus 207 ~~L~~~~~~vvl~g~~~e~~~~~~i~~~~~~~~~~~~~~l~g~~sl~e~~ali~~a~l~I~~Ds-g~~HlAaa~g~P~v~ 285 (348)
T 1psw_A 207 KQLIDEGYQVVLFGSAKDHEAGNEILAALNTEQQAWCRNLAGETQLDQAVILIAACKAIVTNDS-GLMHVAAALNRPLVA 285 (348)
T ss_dssp HHHHHTTCEEEECCCGGGHHHHHHHHTTSCHHHHTTEEECTTTSCHHHHHHHHHTSSEEEEESS-HHHHHHHHTTCCEEE
T ss_pred HHHHHCCCeEEEEeChhhHHHHHHHHHhhhhccccceEeccCcCCHHHHHHHHHhCCEEEecCC-HHHHHHHHcCCCEEE
Confidence 2343346777777754321 22 2454 334322 23478889999999743 456669999999999
Q ss_pred Ee
Q 003222 305 VR 306 (838)
Q Consensus 305 iP 306 (838)
+=
T Consensus 286 lf 287 (348)
T 1psw_A 286 LY 287 (348)
T ss_dssp EE
T ss_pred EE
Confidence 85
|
| >3rhz_A GTF3, nucleotide sugar synthetase-like protein; glycosyltransferase, transferase; HET: UDP; 1.90A {Streptococcus parasanguinis} PDB: 3qkw_A* | Back alignment and structure |
|---|
Probab=95.84 E-value=0.023 Score=61.66 Aligned_cols=111 Identities=13% Similarity=-0.032 Sum_probs=75.7
Q ss_pred CcEEEEEcCCCCchhhhHHhhCCCCcEEEEeCCCCCC-CCCCeEECCCCC--CHHHHHhhcCEEEe-cCC----------
Q 003222 223 VKLLILNFGGQPAGWKLKEEYLPSGWKCLVCGASDSQ-LPPNFIKLPKDA--YTPDFMAASDCMLG-KIG---------- 288 (838)
Q Consensus 223 ~~~Vlvs~Gs~~~~~~ll~~l~~~~~~~vv~G~~~~~-lp~nv~~~~~~~--~~pdlLa~adl~It-~gG---------- 288 (838)
.+.+++..|+.+. .+++..+ .+++.++++|..... ++ ||+++|+.+ .+|.+|+.+|+.+. ..|
T Consensus 177 ~~~~i~yaG~l~k-~~~L~~l-~~~~~f~ivG~G~~~~l~-nV~f~G~~~~~el~~~l~~~~~~lv~~~~~~~~y~~~~~ 253 (339)
T 3rhz_A 177 LKREIHFPGNPER-FSFVKEW-KYDIPLKVYTWQNVELPQ-NVHKINYRPDEQLLMEMSQGGFGLVWMDDKDKEYQSLYC 253 (339)
T ss_dssp EEEEEEECSCTTT-CGGGGGC-CCSSCEEEEESCCCCCCT-TEEEEECCCHHHHHHHHHTEEEEECCCCGGGHHHHTTCC
T ss_pred CCcEEEEeCCcch-hhHHHhC-CCCCeEEEEeCCcccCcC-CEEEeCCCCHHHHHHHHHhCCEEEEECCCchhHHHHhcC
Confidence 3467788898885 3444444 467888888876543 66 999998875 46678865444443 233
Q ss_pred hhhHHHHHHcCCcEEEEeCCCCCChHHHHHHHHHcCcEEEEecCCCChhhHHHHHHHH
Q 003222 289 YGTVSEALAYKLPFVFVRRDYFNEEPFLRNMLEFYQGGVEMIRRDLLTGHWKPYLERA 346 (838)
Q Consensus 289 ~~Tv~Eal~~GvP~l~iP~~~~~EQ~~Na~~l~~~G~g~~l~~~~~~~~~l~~~l~~l 346 (838)
.+-+.|+|++|+|+|+.+.. .+++.+++.++|+.++. .+.+..+|.++
T Consensus 254 P~Kl~eymA~G~PVI~~~~~------~~~~~v~~~~~G~~~~~----~~e~~~~i~~l 301 (339)
T 3rhz_A 254 SYKLGSFLAAGIPVIVQEGI------ANQELIENNGLGWIVKD----VEEAIMKVKNV 301 (339)
T ss_dssp CHHHHHHHHHTCCEEEETTC------TTTHHHHHHTCEEEESS----HHHHHHHHHHC
T ss_pred hHHHHHHHHcCCCEEEccCh------hHHHHHHhCCeEEEeCC----HHHHHHHHHHh
Confidence 23588999999999987632 45677899999998862 34555566554
|
| >3vue_A GBSS-I, granule-bound starch synthase 1, chloroplastic/amyloplastic; rossmann fold, glycosyltransferase, transferase; 2.70A {Oryza sativa japonica group} PDB: 3vuf_A* | Back alignment and structure |
|---|
Probab=95.69 E-value=0.029 Score=64.85 Aligned_cols=131 Identities=17% Similarity=0.133 Sum_probs=81.5
Q ss_pred HHHHHHhCCC--CCCcEEEEEcCCCCch--h-hhHH---hhCCCCcEEEEeCCCCCC-----------CCCCeEECCCCC
Q 003222 211 KEVRKELGIE--DDVKLLILNFGGQPAG--W-KLKE---EYLPSGWKCLVCGASDSQ-----------LPPNFIKLPKDA 271 (838)
Q Consensus 211 ~~~r~~l~~~--~~~~~Vlvs~Gs~~~~--~-~ll~---~l~~~~~~~vv~G~~~~~-----------lp~nv~~~~~~~ 271 (838)
..+++.+|++ ++.| ++++.|..... . .+++ .+...++.+++.|..... ++.++.+.....
T Consensus 313 ~~l~~~~gl~~d~~~p-~i~~vgRl~~~Kg~~~li~a~~~l~~~~~~l~l~G~G~~~~~~~~~~~~~~~~~~v~~~~~~~ 391 (536)
T 3vue_A 313 EALQAEAGLPVDRKIP-LIAFIGRLEEQKGPDVMAAAIPELMQEDVQIVLLGTGKKKFEKLLKSMEEKYPGKVRAVVKFN 391 (536)
T ss_dssp HHHHHHTTSCCCTTSC-EEEEECCBSGGGCHHHHHHHHHHHTTSSCEEEEECCBCHHHHHHHHHHHHHSTTTEEEECSCC
T ss_pred HHHHHhcCCCCCCCCc-EEEEEeeccccCChHHHHHHHHHhHhhCCeEEEEeccCchHHHHHHHHHhhcCCceEEEEecc
Confidence 4566777775 3444 55677777653 2 2333 345567778877765421 577887665443
Q ss_pred --CHHHHHhhcCEEEecC---C-hhhHHHHHHcCCcEEEEeCCCCCChHHHHHHHHHcCcEEEEecCC--------CChh
Q 003222 272 --YTPDFMAASDCMLGKI---G-YGTVSEALAYKLPFVFVRRDYFNEEPFLRNMLEFYQGGVEMIRRD--------LLTG 337 (838)
Q Consensus 272 --~~pdlLa~adl~It~g---G-~~Tv~Eal~~GvP~l~iP~~~~~EQ~~Na~~l~~~G~g~~l~~~~--------~~~~ 337 (838)
.++.+++.||+||.-+ | ..+++|||++|+|+|+.... ...+.++....|......+ .+++
T Consensus 392 ~~~~~~~~~~aD~~v~PS~~E~fgl~~lEAma~G~PvI~s~~g------G~~e~V~dg~~G~~~~~~~~~g~l~~~~d~~ 465 (536)
T 3vue_A 392 APLAHLIMAGADVLAVPSRFEPCGLIQLQGMRYGTPCACASTG------GLVDTVIEGKTGFHMGRLSVDCKVVEPSDVK 465 (536)
T ss_dssp HHHHHHHHHHCSEEEECCSCCSSCSHHHHHHHTTCCEEECSCT------HHHHHCCBTTTEEECCCCCSCTTCCCHHHHH
T ss_pred HHHHHHHHHhhheeecccccCCCCHHHHHHHHcCCCEEEcCCC------CchheeeCCCCccccccCCCceeEECCCCHH
Confidence 2347889999999632 2 25899999999999997532 3445555544565433221 1245
Q ss_pred hHHHHHHHHhh
Q 003222 338 HWKPYLERAIS 348 (838)
Q Consensus 338 ~l~~~l~~ll~ 348 (838)
.+..+|++++.
T Consensus 466 ~la~ai~ral~ 476 (536)
T 3vue_A 466 KVAATLKRAIK 476 (536)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 67778877775
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=88.43 E-value=0.94 Score=54.13 Aligned_cols=125 Identities=14% Similarity=0.101 Sum_probs=72.1
Q ss_pred HHHhCCCCCCcEEEEEcCCCCc-hhhhHH---hhC--CCCcEEEEeCCCCC------------CC-CCCeEECCCCCCHH
Q 003222 214 RKELGIEDDVKLLILNFGGQPA-GWKLKE---EYL--PSGWKCLVCGASDS------------QL-PPNFIKLPKDAYTP 274 (838)
Q Consensus 214 r~~l~~~~~~~~Vlvs~Gs~~~-~~~ll~---~l~--~~~~~~vv~G~~~~------------~l-p~nv~~~~~~~~~p 274 (838)
|+.+|++ +..+||.+|...-+ ..+++. .++ -++-++++...... .+ ++.+.+.+..+ ..
T Consensus 514 R~~~gLp-~~~v~f~~fN~~~Ki~p~~~~~W~~IL~~vP~S~L~Ll~~~~~~~~~l~~~~~~~gi~~~r~~f~~~~~-~~ 591 (723)
T 4gyw_A 514 RSQYGLP-EDAIVYCNFNQLYKIDPSTLQMWANILKRVPNSVLWLLRFPAVGEPNIQQYAQNMGLPQNRIIFSPVAP-KE 591 (723)
T ss_dssp GGGGTCC-TTSEEEECCSCGGGCCHHHHHHHHHHHHHCSSEEEEEEETTGGGHHHHHHHHHHTTCCGGGEEEEECCC-HH
T ss_pred hhhcCCC-CCCEEEEeCCccccCCHHHHHHHHHHHHhCCCCeEEEEeCcHHHHHHHHHHHHhcCCCcCeEEECCCCC-HH
Confidence 5677886 55688888854433 122222 121 13333333222111 02 34577666543 34
Q ss_pred HHH---hhcCEEEe---cCChhhHHHHHHcCCcEEEEeCCCCCChHHHHHHHHHcCcEEEEecCCCChhhHHHHHHHHh
Q 003222 275 DFM---AASDCMLG---KIGYGTVSEALAYKLPFVFVRRDYFNEEPFLRNMLEFYQGGVEMIRRDLLTGHWKPYLERAI 347 (838)
Q Consensus 275 dlL---a~adl~It---~gG~~Tv~Eal~~GvP~l~iP~~~~~EQ~~Na~~l~~~G~g~~l~~~~~~~~~l~~~l~~ll 347 (838)
+.| ..+|+++- .+|.+|++||+++|||+|.++-..+.-. .-+..|...|+...+ ..+..++++..+
T Consensus 592 ~~l~~~~~~Di~LDt~p~~g~tT~~eal~~GvPvvt~~g~~~~sR-~~~s~l~~~gl~e~i------a~~~~~Y~~~a~ 663 (723)
T 4gyw_A 592 EHVRRGQLADVCLDTPLCNGHTTGMDVLWAGTPMVTMPGETLASR-VAASQLTCLGCLELI------AKNRQEYEDIAV 663 (723)
T ss_dssp HHHHHGGGCSEEECCSSSCCSHHHHHHHHTTCCEEBCCCSSGGGT-HHHHHHHHHTCGGGB------CSSHHHHHHHHH
T ss_pred HHHHHhCCCeEEeCCCCcCCHHHHHHHHHcCCCEEEccCCCccHh-HHHHHHHHcCCcccc------cCCHHHHHHHHH
Confidence 555 45999995 5677999999999999999984433322 345677788876433 234445555544
|
| >3q3e_A HMW1C-like glycosyltransferase; N-glycosylation; 2.10A {Actinobacillus pleuropneumoniae serovaorganism_taxid} PDB: 3q3h_A* 3q3i_A | Back alignment and structure |
|---|
Probab=87.31 E-value=0.48 Score=55.02 Aligned_cols=65 Identities=11% Similarity=0.039 Sum_probs=45.7
Q ss_pred CCCeEECCCCCCHH---HHHhhcCEEEe---cCChhhHHHHHHcCCcEEEEeCCCCCChHHHHHHHHHcCcEE
Q 003222 261 PPNFIKLPKDAYTP---DFMAASDCMLG---KIGYGTVSEALAYKLPFVFVRRDYFNEEPFLRNMLEFYQGGV 327 (838)
Q Consensus 261 p~nv~~~~~~~~~p---dlLa~adl~It---~gG~~Tv~Eal~~GvP~l~iP~~~~~EQ~~Na~~l~~~G~g~ 327 (838)
.+.+.+.++.+. . ..+..+|+|+- .+|.+|++||+++|+|+|..+-..+... .-+..+...|...
T Consensus 498 ~~Rv~F~g~~p~-~e~la~y~~aDIfLDpfpy~GgtTtlEALwmGVPVVTl~G~~~asR-vgaSlL~~~GLpE 568 (631)
T 3q3e_A 498 GDSATAHPHSPY-HQYLRILHNCDMMVNPFPFGNTNGIIDMVTLGLVGVCKTGAEVHEH-IDEGLFKRLGLPE 568 (631)
T ss_dssp GGGEEEECCCCH-HHHHHHHHTCSEEECCSSSCCSHHHHHHHHTTCCEEEECCSSHHHH-HHHHHHHHTTCCG
T ss_pred CccEEEcCCCCH-HHHHHHHhcCcEEEeCCcccCChHHHHHHHcCCCEEeccCCcHHHH-hHHHHHHhcCCCc
Confidence 457777776652 3 45578999995 3677999999999999999984333222 2345667788764
|
| >2wqk_A 5'-nucleotidase SURE; SURE protein, putative acid phosphatase, structural genomics, 3-D structure, mixed alpha/beta protein, NPPSFA; 1.50A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=84.61 E-value=4.2 Score=41.70 Aligned_cols=36 Identities=22% Similarity=0.340 Sum_probs=23.2
Q ss_pred CceEEEEEeecCCCcccHHHHHHHHHHHHHCCCeEEEEeCC
Q 003222 13 SKHLVFAYYVTGHGFGHATRVVEVVRNLISAGHDVHVVTGA 53 (838)
Q Consensus 13 m~~~~Il~~v~g~G~GHv~r~laLA~~L~~~Gh~V~~v~~~ 53 (838)
|+++.+ +.--|. |..=..+|+++|.+.| +|+++.+.
T Consensus 1 Mp~ILl---TNDDGi-~apGi~~L~~~l~~~g-~V~VvAP~ 36 (251)
T 2wqk_A 1 MPTFLL---VNDDGY-FSPGINALREALKSLG-RVVVVAPD 36 (251)
T ss_dssp -CEEEE---ECSSCT-TCHHHHHHHHHHTTTS-EEEEEEES
T ss_pred CCEEEE---EcCCCC-CcHHHHHHHHHHHhCC-CEEEEeeC
Confidence 555554 555653 3334568899999988 58887654
|
| >1uqt_A Alpha, alpha-trehalose-phosphate synthase; glycosyltransferase, transferase; HET: U2F; 2.0A {Escherichia coli} SCOP: c.87.1.6 PDB: 1uqu_A* 2wtx_A* 1gz5_A* | Back alignment and structure |
|---|
Probab=83.87 E-value=1.3 Score=50.18 Aligned_cols=76 Identities=17% Similarity=0.088 Sum_probs=54.2
Q ss_pred eEE-CCCCC--CHHHHHhhcCEEEecC---Chh-hHHHHHHcCC-----cEEEEeCCCCCChHHHHHHHHHcCcEEEEec
Q 003222 264 FIK-LPKDA--YTPDFMAASDCMLGKI---GYG-TVSEALAYKL-----PFVFVRRDYFNEEPFLRNMLEFYQGGVEMIR 331 (838)
Q Consensus 264 v~~-~~~~~--~~pdlLa~adl~It~g---G~~-Tv~Eal~~Gv-----P~l~iP~~~~~EQ~~Na~~l~~~G~g~~l~~ 331 (838)
|++ .++++ .++.+++.||+||..+ |+| ++.|||+||+ |+|+-...+..++ + ..|+.+++
T Consensus 333 v~~~~g~v~~~el~~ly~~ADv~v~pS~~EGfgLv~lEAmA~g~~~~~gpvV~S~~~G~~~~------l---~~g~lv~p 403 (482)
T 1uqt_A 333 LYYLNQHFDRKLLMKIFRYSDVGLVTPLRDGMNLVAKEYVAAQDPANPGVLVLSQFAGAANE------L---TSALIVNP 403 (482)
T ss_dssp EEEECSCCCHHHHHHHHHHCSEEEECCSSBSCCHHHHHHHHHSCTTSCCEEEEETTBGGGGT------C---TTSEEECT
T ss_pred EEEeCCCCCHHHHHHHHHHccEEEECCCcccCCchHHHHHHhCCCCCCCCEEEECCCCCHHH------h---CCeEEECC
Confidence 553 45443 4668999999999643 555 7899999998 7777654444444 2 24778887
Q ss_pred CCCChhhHHHHHHHHhhCC
Q 003222 332 RDLLTGHWKPYLERAISLK 350 (838)
Q Consensus 332 ~~~~~~~l~~~l~~ll~~~ 350 (838)
.+ .+.+.++|.++|+++
T Consensus 404 ~d--~~~lA~ai~~lL~~~ 420 (482)
T 1uqt_A 404 YD--RDEVAAALDRALTMS 420 (482)
T ss_dssp TC--HHHHHHHHHHHHTCC
T ss_pred CC--HHHHHHHHHHHHcCC
Confidence 76 468999999999754
|
| >3nb0_A Glycogen [starch] synthase isoform 2; glycogen synthase, glucose-6-phosphate, yeast, allosteric AC transferase; HET: G6P; 2.41A {Saccharomyces cerevisiae} PDB: 3rt1_A* 3nch_A 3naz_A 3o3c_A* 3rsz_A* | Back alignment and structure |
|---|
Probab=82.07 E-value=1.2 Score=52.07 Aligned_cols=38 Identities=11% Similarity=-0.092 Sum_probs=30.7
Q ss_pred CHHHHHhhcCEEEecC----ChhhHHHHHHcCCcEEEEeCCC
Q 003222 272 YTPDFMAASDCMLGKI----GYGTVSEALAYKLPFVFVRRDY 309 (838)
Q Consensus 272 ~~pdlLa~adl~It~g----G~~Tv~Eal~~GvP~l~iP~~~ 309 (838)
.++++|+.||+||.-+ -..+++||+++|+|+|+....+
T Consensus 511 d~~~~~~~advfV~PS~~EgfGl~~LEAmA~G~PvI~s~~gG 552 (725)
T 3nb0_A 511 DYDEFVRGCHLGVFPSYYEPWGYTPAECTVMGVPSITTNVSG 552 (725)
T ss_dssp CHHHHHHHCSEEECCCSSBSSCHHHHHHHHTTCCEEEETTBH
T ss_pred HHHHHHhhceEEEeccccCCCCHHHHHHHHcCCCEEEeCCCC
Confidence 3568999999999643 3358999999999999987543
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 838 | ||||
| d1piea1 | 205 | d.14.1.5 (A:9-213) Galactokinase {Lactococcus lact | 5e-30 | |
| d1wuua1 | 215 | d.14.1.5 (A:2-216) Galactokinase {Human (Homo sapi | 2e-25 | |
| d1kvka1 | 225 | d.14.1.5 (A:1-225) Mevalonate kinase {Rat (Rattus | 2e-21 | |
| d1s4ea1 | 176 | d.14.1.5 (A:5-180) Galactokinase {Archaeon Pyrococ | 1e-20 | |
| d1kkha1 | 180 | d.14.1.5 (A:1-180) Mevalonate kinase {Archaeon Met | 2e-16 | |
| d2c1xa1 | 450 | c.87.1.10 (A:7-456) UDP glucose:flavonoid 3-o-gluc | 7e-06 | |
| d2acva1 | 461 | c.87.1.10 (A:3-463) Triterpene UDP-glucosyl transf | 9e-06 | |
| d1rrva_ | 401 | c.87.1.5 (A:) TDP-vancosaminyltransferase GftD {Am | 5e-05 | |
| d2pq6a1 | 473 | c.87.1.10 (A:8-480) (Iso)flavonoid glycosyltransfe | 2e-04 |
| >d1piea1 d.14.1.5 (A:9-213) Galactokinase {Lactococcus lactis [TaxId: 1358]} Length = 205 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ribosomal protein S5 domain 2-like superfamily: Ribosomal protein S5 domain 2-like family: GHMP Kinase, N-terminal domain domain: Galactokinase species: Lactococcus lactis [TaxId: 1358]
Score = 115 bits (289), Expect = 5e-30
Identities = 51/237 (21%), Positives = 88/237 (37%), Gaps = 44/237 (18%)
Query: 490 LFNWEEEIFVARAPGRLDVMGGIADYSGSLVLQMPIREACHVALQKISPSKQRLWKHALA 549
+F +E+ +PGR++++G DY+G V I + K
Sbjct: 13 VFGDTKEVEYFFSPGRINLIGEHTDYNGGYVFPASITIGTTGLARLREDKK--------- 63
Query: 550 RHNDKGQGPMPVLQIVSYGSELSNRGPTFDMDLSDFMDEGKPMSYEKAKKYFDTNPSQKW 609
V SE + + DL + + + W
Sbjct: 64 ---------------VKLYSENFPKLGVIEFDLDEV----------------EKKDGELW 92
Query: 610 AAYVAGTILVLMTELGVRFEDSISMLVSSAVPEGKGVSSSASVEVASMSAIAAAHGLNIH 669
+ YV ++V++ G + +L+ +P G+SSSAS+E+ + LN+
Sbjct: 93 SNYVK-GMIVMLKGAGYEIDKGFELLIKGEIPTASGLSSSASLELLVGVVLDDLFNLNVP 151
Query: 670 PRDLALLCQKVENHIVGAPCGVMDQMASACGEANKLLAMVCQPAELLGVVEIPSHIR 726
+L L QK EN +G G++DQ A GE K + + C L +P +R
Sbjct: 152 RLELVQLGQKTENDYIGVNSGILDQFAIGFGEVKKAIELDCNT---LKYEMVPVELR 205
|
| >d1wuua1 d.14.1.5 (A:2-216) Galactokinase {Human (Homo sapiens) [TaxId: 9606]} Length = 215 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ribosomal protein S5 domain 2-like superfamily: Ribosomal protein S5 domain 2-like family: GHMP Kinase, N-terminal domain domain: Galactokinase species: Human (Homo sapiens) [TaxId: 9606]
Score = 103 bits (256), Expect = 2e-25
Identities = 55/243 (22%), Positives = 88/243 (36%), Gaps = 42/243 (17%)
Query: 474 RTPE--KRQMRERKAAAGLFNWEEEIFVARAPGRLDVMGGIADYSGSLVLQMPIREACHV 531
R P+ + R+A F E E+ APGR++++G DY+ LVL M + +
Sbjct: 4 RQPQVAELLAEARRAFREEFGAEPEL-AVSAPGRVNLIGEHTDYNQGLVLPMALELMTVL 62
Query: 532 ALQKISPSKQRLWKHALARHNDKGQGPMPVLQIVSYGSELSNRGPTFDMDLSDFMDEGKP 591
L + + +
Sbjct: 63 VGSPRKDGLVSLLTTSE-----------------------------------GADEPQRL 87
Query: 592 MSYEKAKKYFDTNPSQKWAAYVAGTILVLMTELGVRFEDSISMLVSSAVPEGKGVSSSAS 651
+ + +WA YV G + S +V S+VP G G+SSSAS
Sbjct: 88 QFPLPTAQRSLEPGTPRWANYVKGV----IQYYPAAPLPGFSAVVVSSVPLGGGLSSSAS 143
Query: 652 VEVASMSAIAAAHGLNIHPRDLALLCQKVENHIVGAPCGVMDQMASACGEANKLLAMVCQ 711
+EVA+ + + + A +CQ+ E+ G PCG+MDQ S G+ L + C+
Sbjct: 144 LEVATYTFLQQLCPDSGTIAARAQVCQQAEHSFAGMPCGIMDQFISLMGQKGHALLIDCR 203
Query: 712 PAE 714
E
Sbjct: 204 SLE 206
|
| >d1kvka1 d.14.1.5 (A:1-225) Mevalonate kinase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 225 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ribosomal protein S5 domain 2-like superfamily: Ribosomal protein S5 domain 2-like family: GHMP Kinase, N-terminal domain domain: Mevalonate kinase species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 91.5 bits (226), Expect = 2e-21
Identities = 42/220 (19%), Positives = 76/220 (34%), Gaps = 27/220 (12%)
Query: 496 EIFVARAPGRLDVMGGIADYSGSLVLQMPIREACHVALQKISPSKQRLWKHALARHNDKG 555
E+ + APG++ + G A G + L + + + L+ S K L + K
Sbjct: 4 EVLLVSAPGKVILHGEHAVVHGKVALAVALNLRTFLVLRPQSNGKVSLNLPNV---GIKQ 60
Query: 556 QGPMPVLQIVSYGSELSNRGPTFDMDLSDFMDEGKPMSYEKAKKYFDTNPSQKWAAYVAG 615
+ LQ++ G P ++ + + + + + +A
Sbjct: 61 VWDVATLQLLDTGFLEQGDVPAPTLEQLEKLKK--------VAGLPRDCVGNEGLSLLAF 112
Query: 616 TILVLMTELGVRFEDSISMLVSSAVPEGKGVSSSASVEVASMSAIAAAHGLNIHPRD--- 672
L L R S+ ++V S +P G G+ SSA+ V +A+ A +P
Sbjct: 113 LYLYLAICRKQRTLPSLDIMVWSELPPGAGLGSSAAYSVCVAAALLTACEEVTNPLKDRG 172
Query: 673 ------------LALLCQKVENHIVGAPCGVMDQMASACG 700
+ + E I G P G +D S G
Sbjct: 173 SIGSWPEEDLKSINKWAYEGERVIHGNPSG-VDNSVSTWG 211
|
| >d1s4ea1 d.14.1.5 (A:5-180) Galactokinase {Archaeon Pyrococcus furiosus [TaxId: 2261]} Length = 176 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ribosomal protein S5 domain 2-like superfamily: Ribosomal protein S5 domain 2-like family: GHMP Kinase, N-terminal domain domain: Galactokinase species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Score = 88.0 bits (217), Expect = 1e-20
Identities = 49/214 (22%), Positives = 81/214 (37%), Gaps = 48/214 (22%)
Query: 501 RAPGRLDVMGGIADYSGSLVLQMPIREACHVALQKISPSKQRLWKHALARHNDKGQGPMP 560
++PGR++++G DY+ V+ M I + +K
Sbjct: 3 KSPGRVNLIGEHTDYTYGYVMPMAIDLYTIITAEKYD----------------------- 39
Query: 561 VLQIVSYGSELSNRGPTFDMDLSDFMDEGKPMSYEKAKKYFDTNPSQKWAAYVAGTILVL 620
+ + EK + W YV G + VL
Sbjct: 40 -----------------------KVQLYSEHFNEEKTFTLDNLTKEGSWIDYVKGVLWVL 76
Query: 621 MTELGVRFEDSISMLVSSAVPEGKGVSSSASVEVASMSAIAAAHGLNIHPRDLALLCQKV 680
+ E + ++ +P G G+SSSAS EV + + + LNI P ALL +K
Sbjct: 77 IQEGYKIG--GLKGKITGDLPLGAGLSSSASFEVGILEVLNQLYNLNIDPLKKALLAKKA 134
Query: 681 ENHIVGAPCGVMDQMASACGEANKLLAMVCQPAE 714
EN VG PCG++DQ A G+ + ++ + Q +
Sbjct: 135 ENEFVGVPCGILDQFAVVFGKKDNVIFLDTQTLQ 168
|
| >d1kkha1 d.14.1.5 (A:1-180) Mevalonate kinase {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 180 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ribosomal protein S5 domain 2-like superfamily: Ribosomal protein S5 domain 2-like family: GHMP Kinase, N-terminal domain domain: Mevalonate kinase species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 75.7 bits (185), Expect = 2e-16
Identities = 28/203 (13%), Positives = 64/203 (31%), Gaps = 41/203 (20%)
Query: 498 FVARAPGRLDVMGGIADYSGSLVLQMPIREACHVALQKISPSKQRLWKHALARHNDKGQG 557
+ P ++ + G A G + M I + +++ + L + L
Sbjct: 6 MIIETPSKVILFGEHAVVYGYRAISMAIDLTSTIEIKETQEDEIILNLNDL--------- 56
Query: 558 PMPVLQIVSYGSELSNRGPTFDMDLSDFMDEGKPMSYEKAKKYFDTNPSQKWAAYVAGTI 617
+ ++L++ + + Y I
Sbjct: 57 -----------------NKSLGLNLNEIKNI--------------NPNNFGDFKYCLCAI 85
Query: 618 LVLMTELGVRFEDSISMLVSSAVPEGKGVSSSASVEVASMSAIAAAHGLNIHPRDLALLC 677
+ L + + + +SS +P G+ SSAS+ + ++ A++ + + ++A L
Sbjct: 86 KNTLDYLNIEPKTGFKINISSKIPISCGLGSSASITIGTIKAVSGFYNKELKDDEIAKLG 145
Query: 678 QKVENHIVGAPCGVMDQMASACG 700
VE I G + D
Sbjct: 146 YMVEKEIQG-KASITDTSTITYK 167
|
| >d2c1xa1 c.87.1.10 (A:7-456) UDP glucose:flavonoid 3-o-glucosyltransferase {Grape (Vitis vinifera) [TaxId: 29760]} Length = 450 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: UDP-Glycosyltransferase/glycogen phosphorylase superfamily: UDP-Glycosyltransferase/glycogen phosphorylase family: UDPGT-like domain: UDP glucose:flavonoid 3-o-glucosyltransferase species: Grape (Vitis vinifera) [TaxId: 29760]
Score = 47.1 bits (110), Expect = 7e-06
Identities = 23/190 (12%), Positives = 54/190 (28%), Gaps = 11/190 (5%)
Query: 13 SKHLVFAYYVTGHGFGHATRVVEVVRNLISAGHDVHVVTGAPDF----VFTSEIQSPRLF 68
+ H+ + HA ++ VVR L +A + +F + + +
Sbjct: 1 NPHVAV---LAFPFSTHAAPLLAVVRRLAAAAPHAVFSFFSTSQSNASIFHDSMHTMQCN 57
Query: 69 IRKVLLDCGAVQADALTVDRLASLEKYSETAVAPRKSILKDEVEWLNSIKADLVVSDVVP 128
I+ + G + +E ++ A + + V +V+D
Sbjct: 58 IKSYDISDGVPEGYVFAGRPQEDIELFTRAAPESFRQGMVMAVA-ETGRPVSCLVADAFI 116
Query: 129 VACRAAADAGIRSVCVTNFSWDFIYAEYVMAAGHHHRSIVWQIAEDYSHCEFLIRLPGYC 188
A + + + +V + V + + L+
Sbjct: 117 WFAADMAAEMGVAWLPFWTAGPNSLSTHVYIDEIREKIGV---SGIQGREDELLNFIPGM 173
Query: 189 PMPAFRDVID 198
FRD+ +
Sbjct: 174 SKVRFRDLQE 183
|
| >d2acva1 c.87.1.10 (A:3-463) Triterpene UDP-glucosyl transferase UGT71G1 {Medicago truncatula [TaxId: 3880]} Length = 461 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: UDP-Glycosyltransferase/glycogen phosphorylase superfamily: UDP-Glycosyltransferase/glycogen phosphorylase family: UDPGT-like domain: Triterpene UDP-glucosyl transferase UGT71G1 species: Medicago truncatula [TaxId: 3880]
Score = 46.7 bits (109), Expect = 9e-06
Identities = 26/191 (13%), Positives = 58/191 (30%), Gaps = 10/191 (5%)
Query: 12 SSKHLVFAYYVTGHGFGHATRVVEVVRNLISAGHDVHVVTGAPDFVFTSEIQSPRLFIRK 71
+ L+F + G GH +E + L + ++++ F S +
Sbjct: 6 KNSELIF---IPAPGIGHLASALEFAKLLTNHDKNLYITVFCIKFPGMPFADSYIKSVLA 62
Query: 72 VLLDCGAVQ---ADALTVDRLASLEKYSETAVAPRKSILKDEVEWLNSIKADLVVSDVVP 128
+ + + L S E Y T + +K ++ + S K +V D
Sbjct: 63 SQPQIQLIDLPEVEPPPQELLKSPEFYILTFLESLIPHVKATIKTILSNKVVGLVLDFFC 122
Query: 129 VACRAAADAGIRSVCVTNFSWDFIYAEYVMAAGHHHRSIVWQIAEDYSHCEFLIRLPGYC 188
V+ + + S + + + ++ +D L+ +PG
Sbjct: 123 VSMIDVGNEFGIPSYLFLTSNVGFLSLML----SLKNRQIEEVFDDSDRDHQLLNIPGIS 178
Query: 189 PMPAFRDVIDV 199
+ D
Sbjct: 179 NQVPSNVLPDA 189
|
| >d1rrva_ c.87.1.5 (A:) TDP-vancosaminyltransferase GftD {Amycolatopsis orientalis [TaxId: 31958]} Length = 401 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: UDP-Glycosyltransferase/glycogen phosphorylase superfamily: UDP-Glycosyltransferase/glycogen phosphorylase family: Gtf glycosyltransferase domain: TDP-vancosaminyltransferase GftD species: Amycolatopsis orientalis [TaxId: 31958]
Score = 44.3 bits (103), Expect = 5e-05
Identities = 26/358 (7%), Positives = 68/358 (18%), Gaps = 53/358 (14%)
Query: 22 VTGHGFGHATRVVEVVRNLISAGHDVHVVTGAPDFVFTSEIQSPRLFIRKVLLDCGAVQA 81
G V + L + G + + + V L +
Sbjct: 6 SVCGTRGDVEIGVALADRLKALGVQTRMCAPPA---AEERLAEVGVPHVPVGLPQHMMLQ 62
Query: 82 DALTVDRLASLEKYSETAVAPRKSILKDEVEWLNSIKADLVVSDVVPVACRAAADAGIRS 141
+ + ++ + V + + A + V D+ + +
Sbjct: 63 EGMPPPPPEEEQRLAAMTVEMQFDAVPG---AAEGCAAVVAVGDLAAATGVRSVAEKLGL 119
Query: 142 VCVTNFSWDFIYAEYVMAAGHHHRSIVWQIAEDYSHCEFLIRLPG--------------- 186
+ A + + + E R
Sbjct: 120 PFFYSVPSPVYLASPHLPPAYDEPTTPGVTDIRVLWEERAARFADRYGPTLNRRRAEIGL 179
Query: 187 -----------------------YCPMPAFRDVIDVPLVVRRLHKSRKEVRKELGIEDDV 223
P V ++ E+ L
Sbjct: 180 PPVEDVFGYGHGERPLLAADPVLAPLQPDVDAVQTGAWLLSDERPLPPELEAFLAAGSPP 239
Query: 224 KLLILNFGGQPAGWKLKEEYL----PSGWKCLVCGASDSQLPPNF---IKLPKDAYTPDF 276
+ + + G + ++ + P+ +
Sbjct: 240 VHIGFGSSSGRGIADAAKVAVEAIRAQGRRVILSRGWTELVLPDDRDDCFAIDEVNFQAL 299
Query: 277 MAASDCMLGKIGYGTVSEALAYKLPFVFVRRDYFNEEPFLRNMLEFYQGGVEMIRRDL 334
++ GT A +P + + ++P+ + GV
Sbjct: 300 FRRVAAVIHHGSAGTEHVATRAGVPQLVI--PRNTDQPYFAGRVAALGIGVAHDGPTP 355
|
| >d2pq6a1 c.87.1.10 (A:8-480) (Iso)flavonoid glycosyltransferase {Medicago truncatula [TaxId: 3880]} Length = 473 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: UDP-Glycosyltransferase/glycogen phosphorylase superfamily: UDP-Glycosyltransferase/glycogen phosphorylase family: UDPGT-like domain: (Iso)flavonoid glycosyltransferase species: Medicago truncatula [TaxId: 3880]
Score = 42.1 bits (97), Expect = 2e-04
Identities = 27/201 (13%), Positives = 57/201 (28%), Gaps = 11/201 (5%)
Query: 15 HLVFAYYVTGHGFGHATRVVEVVRNLISAGHDVHVVTGAPDFVFTSEIQSPRLFIRKVLL 74
H+V + GH + ++ + L G + V + + + P+ F
Sbjct: 3 HVVM---IPYPVQGHINPLFKLAKLLHLRGFHITFVNTEYNHKRLLKSRGPKAFDGFTDF 59
Query: 75 DCGAVQA--------DALTVDRLASLEKYSETAVAPRKSILKDEVEWLNSIKADLVVSDV 126
+ ++ ++ D + + + P +L N +VSD
Sbjct: 60 NFESIPDGLTPMEGDGDVSQDVPTLCQSVRKNFLKPYCELLTRLNHSTNVPPVTCLVSDC 119
Query: 127 VPVACRAAADAGIRSVCVTNFSWDFIYAEYVMAAGHHHRSIVWQIAEDYSHCEFLIRLPG 186
AA+ + S + R I+ E Y L
Sbjct: 120 CMSFTIQAAEEFELPNVLYFSSSACSLLNVMHFRSFVERGIIPFKDESYLTNGCLETKVD 179
Query: 187 YCPMPAFRDVIDVPLVVRRLH 207
+ P + D+ +R +
Sbjct: 180 WIPGLKNFRLKDIVDFIRTTN 200
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 838 | |||
| d1piea1 | 205 | Galactokinase {Lactococcus lactis [TaxId: 1358]} | 100.0 | |
| d1wuua1 | 215 | Galactokinase {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d1s4ea1 | 176 | Galactokinase {Archaeon Pyrococcus furiosus [TaxId | 100.0 | |
| d1kkha1 | 180 | Mevalonate kinase {Archaeon Methanococcus jannasch | 99.96 | |
| d1rrva_ | 401 | TDP-vancosaminyltransferase GftD {Amycolatopsis or | 99.95 | |
| d1kvka1 | 225 | Mevalonate kinase {Rat (Rattus norvegicus) [TaxId: | 99.94 | |
| d2c1xa1 | 450 | UDP glucose:flavonoid 3-o-glucosyltransferase {Gra | 99.93 | |
| d1f0ka_ | 351 | Peptidoglycan biosynthesis glycosyltransferase Mur | 99.93 | |
| d1pn3a_ | 391 | TDP-epi-vancosaminyltransferase GtfA {Amycolatopsi | 99.92 | |
| d1iira_ | 401 | UDP-glucosyltransferase GtfB {Amycolatopsis orient | 99.92 | |
| d1k47a1 | 194 | Phosphomevalonate kinase (PMK) {Streptococcus pneu | 99.89 | |
| d2acva1 | 461 | Triterpene UDP-glucosyl transferase UGT71G1 {Medic | 99.88 | |
| d2pq6a1 | 473 | (Iso)flavonoid glycosyltransferase {Medicago trunc | 99.88 | |
| d2vcha1 | 471 | Hydroquinone glucosyltransferase {Thale cress (Ara | 99.87 | |
| d1h72c1 | 163 | Homoserine kinase {Archaeon Methanococcus jannasch | 99.55 | |
| d2bisa1 | 437 | Glycogen synthase 1, GlgA {Pyrococcus abyssi [TaxI | 98.7 | |
| d2iw1a1 | 370 | Lipopolysaccharide core biosynthesis protein RfaG | 98.59 | |
| d1rzua_ | 477 | Glycogen synthase 1, GlgA {Agrobacterium tumefacie | 98.43 | |
| d1ueka1 | 148 | 4-(cytidine 5'-diphospho)-2C-methyl-D-erythritol k | 97.95 | |
| d1oj4a1 | 163 | 4-(cytidine 5'-diphospho)-2C-methyl-D-erythritol k | 97.95 | |
| d1o6ca_ | 377 | UDP-N-acetylglucosamine 2-epimerase {Bacillus subt | 97.82 | |
| d1v4va_ | 373 | UDP-N-acetylglucosamine 2-epimerase {Thermus therm | 97.62 | |
| d1piea2 | 183 | Galactokinase {Lactococcus lactis [TaxId: 1358]} | 97.54 | |
| d2bfwa1 | 196 | Glycogen synthase 1, GlgA {Pyrococcus abyssi [TaxI | 97.2 | |
| d1fi4a1 | 188 | Mevalonate 5-diphosphate decarboxylase {Baker's ye | 97.13 | |
| d1f6da_ | 376 | UDP-N-acetylglucosamine 2-epimerase {Escherichia c | 97.12 | |
| d2f9fa1 | 166 | First mannosyl transferase WbaZ {Archaeoglobus ful | 97.04 | |
| d1wuua2 | 176 | Galactokinase {Human (Homo sapiens) [TaxId: 9606]} | 96.3 | |
| d1s4ea2 | 171 | Galactokinase {Archaeon Pyrococcus furiosus [TaxId | 95.96 | |
| d1pswa_ | 348 | ADP-heptose LPS heptosyltransferase II {Escherichi | 95.88 | |
| d1uqta_ | 456 | Trehalose-6-phosphate synthase, OtsA {Escherichia | 82.36 |
| >d1piea1 d.14.1.5 (A:9-213) Galactokinase {Lactococcus lactis [TaxId: 1358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ribosomal protein S5 domain 2-like superfamily: Ribosomal protein S5 domain 2-like family: GHMP Kinase, N-terminal domain domain: Galactokinase species: Lactococcus lactis [TaxId: 1358]
Probab=100.00 E-value=1.7e-40 Score=337.78 Aligned_cols=197 Identities=26% Similarity=0.467 Sum_probs=166.4
Q ss_pred HHHHHhccCCCCCceEEEEccccccccccccccCCCeeeccccccceEEEEEEcCCccchhhhhhhhccCCCCCCCCCeE
Q 003222 483 ERKAAAGLFNWEEEIFVARAPGRLDVMGGIADYSGSLVLQMPIREACHVALQKISPSKQRLWKHALARHNDKGQGPMPVL 562 (838)
Q Consensus 483 ~~~~~~~~f~~~~~~~~~~APGRv~L~GeH~Dy~gg~vl~~ai~~~~~v~~~~~~d~~~~l~~~~~~~~~~~~~~~~~~i 562 (838)
....+++.||..+++.+++|||||+|||||+||+||+|+++||++++++++++++|+++++++.+ ++..
T Consensus 6 ~~~~f~~~f~~~~~~~~~~aPgRv~L~GeH~Dy~gg~vl~~AI~~~~~v~~~~~~d~~i~i~s~~-----------~~~~ 74 (205)
T d1piea1 6 LTEKFAEVFGDTKEVEYFFSPGRINLIGEHTDYNGGYVFPASITIGTTGLARLREDKKVKLYSEN-----------FPKL 74 (205)
T ss_dssp HHHHHHHHHSCCCSCEEEEEEEEEEEECCSCTTTTCEEEEEEEEEEEEEEEEECSSSEEEEEETT-----------CGGG
T ss_pred HHHHHHHHhCCCcceeEEEcceEEEEecCCeeECCCEeecccccceEEEEEecCCCCeeeeecCC-----------CCcc
Confidence 34557789998788788899999999999999999999999999999999999998776655431 1111
Q ss_pred EEEecccccCCCCCceeccCCccccCCCCcchhhhhcccCCCCCCChhHHHHHHHHHHHHHhCCCCCCCEEEEEEeCCCC
Q 003222 563 QIVSYGSELSNRGPTFDMDLSDFMDEGKPMSYEKAKKYFDTNPSQKWAAYVAGTILVLMTELGVRFEDSISMLVSSAVPE 642 (838)
Q Consensus 563 ~i~s~~~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~~~~~~w~~y~~g~i~~~~~~~g~~~~~g~~i~i~s~iP~ 642 (838)
..++.++.++. ..+...|.+|+++++..+ ++.+..+..||++.|.|+||.
T Consensus 75 -------------~~~~~~~~~~~----------------~~~~~~~~~~~~~~i~~l-~~~~~~~~~G~~i~i~s~iP~ 124 (205)
T d1piea1 75 -------------GVIEFDLDEVE----------------KKDGELWSNYVKGMIVML-KGAGYEIDKGFELLIKGEIPT 124 (205)
T ss_dssp -------------CCEEEETTCTT----------------SCCTTCTHHHHHHHHHHH-HHTTCCCCSCEEEEEEECSCT
T ss_pred -------------ceeeccccccc----------------cccccchhHHHHHHHHHH-HHhCCccccCeEEEEecCCcc
Confidence 12333333210 124578999999998865 467776668999999999999
Q ss_pred CCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhhhcCCCCChhhHHHhhcCCCCeEEEEEecCCceeeeecc
Q 003222 643 GKGVSSSASVEVASMSAIAAAHGLNIHPRDLALLCQKVENHIVGAPCGVMDQMASACGEANKLLAMVCQPAELLGVVEI 721 (838)
Q Consensus 643 g~GLgSSAA~~va~~~al~~l~~~~l~~~ela~~a~~~E~~~~G~~~G~mDq~a~~~G~~~~~l~~d~~~~~~~~~v~~ 721 (838)
|+|||||||++||++.|++.++|+++++.+++++|+++|+.++|.|||+|||+++++||.++++++||++.++ +.+|+
T Consensus 125 gsGLgSSAAl~va~~~al~~~~~~~~~~~~ia~~a~~~E~~~~g~~~G~~Dq~as~~g~~~~~~~~d~~~~~~-~~ip~ 202 (205)
T d1piea1 125 ASGLSSSASLELLVGVVLDDLFNLNVPRLELVQLGQKTENDYIGVNSGILDQFAIGFGEVKKAIELDCNTLKY-EMVPV 202 (205)
T ss_dssp TSSSCHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTTCCCCCSHHHHHHHHCBTTEEEEEETTTCCE-EEEEC
T ss_pred ccccCccHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhhcCCCCcHHHHHHHHhcCCCeEEEEECCCCcE-EecCc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999887 56654
|
| >d1wuua1 d.14.1.5 (A:2-216) Galactokinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ribosomal protein S5 domain 2-like superfamily: Ribosomal protein S5 domain 2-like family: GHMP Kinase, N-terminal domain domain: Galactokinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=2.8e-37 Score=316.50 Aligned_cols=202 Identities=28% Similarity=0.403 Sum_probs=162.0
Q ss_pred HHHHHHHHhccCCCCCceEEEEccccccccccccccCCCeeeccccccceEEEEEEcCCccchhhhhhhhccCCCCCCCC
Q 003222 480 QMRERKAAAGLFNWEEEIFVARAPGRLDVMGGIADYSGSLVLQMPIREACHVALQKISPSKQRLWKHALARHNDKGQGPM 559 (838)
Q Consensus 480 ~~~~~~~~~~~f~~~~~~~~~~APGRv~L~GeH~Dy~gg~vl~~ai~~~~~v~~~~~~d~~~~l~~~~~~~~~~~~~~~~ 559 (838)
....+..+...||.+++ ++++|||||+|||||+||+||+|+++||+++|++++++++|+++++++.+
T Consensus 12 ~~~~~~~F~~~fg~~p~-~i~~APGrv~L~GEH~dy~Gg~vl~~Ai~~~~~v~~~~~~d~~i~v~s~~------------ 78 (215)
T d1wuua1 12 LAEARRAFREEFGAEPE-LAVSAPGRVNLIGEHTDYNQGLVLPMALELMTVLVGSPRKDGLVSLLTTS------------ 78 (215)
T ss_dssp HHHHHHHHHHHHSSCCS-EEEEEEEEEEEECTTCGGGTCEEEEEEEEEEEEEEEEEETTCEEEEEECC------------
T ss_pred HHHHHHHHHHHhCCCCC-EEEEcceEEEEecCCeeeCCceEEeeeccCcEEEEEEecCCCEEEEEEcc------------
Confidence 34456678899997655 68999999999999999999999999999999999999999877665331
Q ss_pred CeEEEEecccccCCCCCceeccCCccccCCCCcchhhhhcccCCCCCCChhHHHHHHHHHHHHHhCCCCCCCEEEEEEeC
Q 003222 560 PVLQIVSYGSELSNRGPTFDMDLSDFMDEGKPMSYEKAKKYFDTNPSQKWAAYVAGTILVLMTELGVRFEDSISMLVSSA 639 (838)
Q Consensus 560 ~~i~i~s~~~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~~~~~~w~~y~~g~i~~~~~~~g~~~~~g~~i~i~s~ 639 (838)
.+... ...+.+++..... ...+....|.+|+++++..+ .+... .||++.+.|+
T Consensus 79 ---------~~~~~-~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~---~~~~~-~g~~i~i~S~ 131 (215)
T d1wuua1 79 ---------EGADE-PQRLQFPLPTAQR-------------SLEPGTPRWANYVKGVIQYY---PAAPL-PGFSAVVVSS 131 (215)
T ss_dssp ---------SSSCS-CSEEEEECCCSSC-------------CCCCCSSGGGHHHHHHHHHC---SSSCC-CEEEEEEEEC
T ss_pred ---------CCCCc-ceEEeeccccccc-------------ccccccchhhhhhhhhHhhh---ccCCC-CCeEEEEecC
Confidence 10000 0011122111000 00124468999999876542 12223 6999999999
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhhhcCCCCChhhHHHhhcCCCCeEEEEEecCCceeeee
Q 003222 640 VPEGKGVSSSASVEVASMSAIAAAHGLNIHPRDLALLCQKVENHIVGAPCGVMDQMASACGEANKLLAMVCQPAELLGVV 719 (838)
Q Consensus 640 iP~g~GLgSSAA~~va~~~al~~l~~~~l~~~ela~~a~~~E~~~~G~~~G~mDq~a~~~G~~~~~l~~d~~~~~~~~~v 719 (838)
||+|+|||||||++||++.|++.+++.++++.+++++|+++|+.++|.|||+|||+++++|+.++++++||+++++ +.+
T Consensus 132 iP~gaGLgSSAA~~val~~al~~~~~~~~~~~~la~~a~~~E~~~~G~~~G~mDq~as~~g~~~~~~~id~~~~~~-~~v 210 (215)
T d1wuua1 132 VPLGGGLSSSASLEVATYTFLQQLCPDSGTIAARAQVCQQAEHSFAGMPCGIMDQFISLMGQKGHALLIDCRSLET-SLV 210 (215)
T ss_dssp SCTTSSSCHHHHHHHHHHHHHHHHSCCCSCHHHHHHHHHHHHHHHTCCCCCSHHHHHHHHCCTTEEEEEETTTCCE-EEE
T ss_pred cccCcccccchHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhcCCCCcHHHHHHHHhCCCCeEEEEECCCCcE-Eee
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999987 777
Q ss_pred ccC
Q 003222 720 EIP 722 (838)
Q Consensus 720 ~~~ 722 (838)
++|
T Consensus 211 p~~ 213 (215)
T d1wuua1 211 PLS 213 (215)
T ss_dssp ECC
T ss_pred cCC
Confidence 776
|
| >d1s4ea1 d.14.1.5 (A:5-180) Galactokinase {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ribosomal protein S5 domain 2-like superfamily: Ribosomal protein S5 domain 2-like family: GHMP Kinase, N-terminal domain domain: Galactokinase species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=100.00 E-value=1.1e-36 Score=302.05 Aligned_cols=175 Identities=28% Similarity=0.511 Sum_probs=142.1
Q ss_pred EEccccccccccccccCCCeeeccccccceEEEEEEcCCccchhhhhhhhccCCCCCCCCCeEEEEecccccCCCCCcee
Q 003222 500 ARAPGRLDVMGGIADYSGSLVLQMPIREACHVALQKISPSKQRLWKHALARHNDKGQGPMPVLQIVSYGSELSNRGPTFD 579 (838)
Q Consensus 500 ~~APGRv~L~GeH~Dy~gg~vl~~ai~~~~~v~~~~~~d~~~~l~~~~~~~~~~~~~~~~~~i~i~s~~~~~~~~~~~~~ 579 (838)
++|||||+|+|||+||+||+||++||++++++.+.++++.+++.. ++ . ....
T Consensus 2 v~aPgRi~l~GeH~Dy~gg~vl~~AI~~~~~v~~~~~~~~~i~~~---------------------~~----~---~~~~ 53 (176)
T d1s4ea1 2 VKSPGRVNLIGEHTDYTYGYVMPMAIDLYTIITAEKYDKVQLYSE---------------------HF----N---EEKT 53 (176)
T ss_dssp EEEEEEEESSCCSCGGGTCEECEEEEEEEEEEC----CCBCCCBT---------------------TT----T---C-C-
T ss_pred cccCEEEEEEccCeeeCCCEEEeEEeeeEEEEEEEcccceEEEec---------------------cC----C---ccee
Confidence 699999999999999999999999999999998877654332211 00 0 0111
Q ss_pred ccCCccccCCCCcchhhhhcccCCCCCCChhHHHHHHHHHHHHHhCCCCCCCEEEEEEeCCCCCCCCChHHHHHHHHHHH
Q 003222 580 MDLSDFMDEGKPMSYEKAKKYFDTNPSQKWAAYVAGTILVLMTELGVRFEDSISMLVSSAVPEGKGVSSSASVEVASMSA 659 (838)
Q Consensus 580 ~~l~~~~~~~~p~~~~~~~~~~~~~~~~~w~~y~~g~i~~~~~~~g~~~~~g~~i~i~s~iP~g~GLgSSAA~~va~~~a 659 (838)
+++.+ ......|.+|+.+++..+. +.+... .||++.|.|+||.|+|||||||++||++.|
T Consensus 54 ~~~~~------------------~~~~~~~~~~~~~~~~~~~-~~~~~~-~g~~i~i~s~iP~gsGLgSSAAl~va~~~a 113 (176)
T d1s4ea1 54 FTLDN------------------LTKEGSWIDYVKGVLWVLI-QEGYKI-GGLKGKITGDLPLGAGLSSSASFEVGILEV 113 (176)
T ss_dssp --CC-------------------CCCCSSTHHHHHHHHHHHH-HTTCCC-CCBC-CEEESSCTTSSSCHHHHHHHHHHHH
T ss_pred eeecc------------------ccccccchhheehhhhhhh-hhcccC-CCeEEEEecCcccCccccchHHHHHHHHHH
Confidence 22222 1234689999999888765 566655 799999999999999999999999999999
Q ss_pred HHHHhCCCCCHHHHHHHHHHHHhhhcCCCCChhhHHHhhcCCCCeEEEEEecCCceeeeeccCC
Q 003222 660 IAAAHGLNIHPRDLALLCQKVENHIVGAPCGVMDQMASACGEANKLLAMVCQPAELLGVVEIPS 723 (838)
Q Consensus 660 l~~l~~~~l~~~ela~~a~~~E~~~~G~~~G~mDq~a~~~G~~~~~l~~d~~~~~~~~~v~~~~ 723 (838)
+++++|.++++.+++++|+++|+.++|.|||+|||+++++||.++++++||++.++ +++++|+
T Consensus 114 l~~~~~~~~~~~~l~~~a~~~E~~~~g~~~G~~Dq~~~~~gg~~~~~~~d~~~~~~-~~i~~P~ 176 (176)
T d1s4ea1 114 LNQLYNLNIDPLKKALLAKKAENEFVGVPCGILDQFAVVFGKKDNVIFLDTQTLQY-EYIPFPK 176 (176)
T ss_dssp HHHHTTCCCCHHHHHHHHHHHHHHTSCCCCCSHHHHHHHHCCTTEEEEEETTTTEE-EEEECCT
T ss_pred HHHHhhccCCHHHHHHHHHHHHHHhcCCCcchHHHHHHHhcCCCEEEEEeCCCCCE-EecCCCC
Confidence 99999999999999999999999999999999999999999999999999999887 7888873
|
| >d1kkha1 d.14.1.5 (A:1-180) Mevalonate kinase {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ribosomal protein S5 domain 2-like superfamily: Ribosomal protein S5 domain 2-like family: GHMP Kinase, N-terminal domain domain: Mevalonate kinase species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.96 E-value=7.5e-29 Score=246.07 Aligned_cols=171 Identities=16% Similarity=0.219 Sum_probs=137.1
Q ss_pred ceEEEEccccccccccccccCCCeeeccccccceEEEEEEcCCccchhhhhhhhccCCCCCCCCCeEEEEecccccCCCC
Q 003222 496 EIFVARAPGRLDVMGGIADYSGSLVLQMPIREACHVALQKISPSKQRLWKHALARHNDKGQGPMPVLQIVSYGSELSNRG 575 (838)
Q Consensus 496 ~~~~~~APGRv~L~GeH~Dy~gg~vl~~ai~~~~~v~~~~~~d~~~~l~~~~~~~~~~~~~~~~~~i~i~s~~~~~~~~~ 575 (838)
..++++|||||+|+|||+||+||+|+++||++++++.+.+++++++.+.+. +.+
T Consensus 4 ~~~~~~aPgkv~L~GEh~~~~G~~~l~~aI~~~~~v~~~~~~~~~~~i~~~---------------------~~~----- 57 (180)
T d1kkha1 4 SHMIIETPSKVILFGEHAVVYGYRAISMAIDLTSTIEIKETQEDEIILNLN---------------------DLN----- 57 (180)
T ss_dssp CCEEEEEEEEEEEECTTGGGGTCCEEEEEEEEEEEEEEEECCSSEEEEEET---------------------TTT-----
T ss_pred CeEEEEcCEEEEEEccCeEEcCCEEEEEEEeCEEEEEEEECCCCCcceeee---------------------ccc-----
Confidence 457899999999999999999999999999999999999998876554322 100
Q ss_pred CceeccCCccccCCCCcchhhhhcccCCCCCCChhHHHHHHHHHHHHHhCCCCCCCEEEEEEeCCCCCCCCChHHHHHHH
Q 003222 576 PTFDMDLSDFMDEGKPMSYEKAKKYFDTNPSQKWAAYVAGTILVLMTELGVRFEDSISMLVSSAVPEGKGVSSSASVEVA 655 (838)
Q Consensus 576 ~~~~~~l~~~~~~~~p~~~~~~~~~~~~~~~~~w~~y~~g~i~~~~~~~g~~~~~g~~i~i~s~iP~g~GLgSSAA~~va 655 (838)
....+++++.... ......|..|+..++...++..+.....||++.+.|+||.|+|||||||+++|
T Consensus 58 ~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~i~i~s~iP~g~GLGSSaa~~va 123 (180)
T d1kkha1 58 KSLGLNLNEIKNI--------------NPNNFGDFKYCLCAIKNTLDYLNIEPKTGFKINISSKIPISCGLGSSASITIG 123 (180)
T ss_dssp EEEEEETTTGGGC--------------CGGGSGGGHHHHHHHHHHHHHTTCCCCSCEEEEEEECSCSSSSSCHHHHHHHH
T ss_pred ceeeecchhcccc--------------CccchhhHHHHHHHHHHHHHHhCCCCCCCEEEEEeccchhhcCccccchhHHH
Confidence 0112232221100 01123567888888877777777765579999999999999999999999999
Q ss_pred HHHHHHHHhCCCCCHHHHHHHHHHHHhhhcCCCCChhhHHHhhcCCCCeEEEEEe
Q 003222 656 SMSAIAAAHGLNIHPRDLALLCQKVENHIVGAPCGVMDQMASACGEANKLLAMVC 710 (838)
Q Consensus 656 ~~~al~~l~~~~l~~~ela~~a~~~E~~~~G~~~G~mDq~a~~~G~~~~~l~~d~ 710 (838)
++.+++.+++.++++.+++++|+++|+.++|.++| |||++|++|| +++++.
T Consensus 124 ~~~al~~~~~~~l~~~~l~~la~~~E~~~~g~~sg-~D~~~~~~Gg---~i~~~~ 174 (180)
T d1kkha1 124 TIKAVSGFYNKELKDDEIAKLGYMVEKEIQGKASI-TDTSTITYKG---ILEIKN 174 (180)
T ss_dssp HHHHHHHTTTCCCCHHHHHHHHHHHHHHHSSSCCS-HHHHHHHHCS---EEEESS
T ss_pred HHHHHHHHhCcCCCHHHHHHHHHHHHHHhCCCCCH-HHHHHHHhCC---EEEEeC
Confidence 99999999999999999999999999999998766 9999999999 456543
|
| >d1rrva_ c.87.1.5 (A:) TDP-vancosaminyltransferase GftD {Amycolatopsis orientalis [TaxId: 31958]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: UDP-Glycosyltransferase/glycogen phosphorylase superfamily: UDP-Glycosyltransferase/glycogen phosphorylase family: Gtf glycosyltransferase domain: TDP-vancosaminyltransferase GftD species: Amycolatopsis orientalis [TaxId: 31958]
Probab=99.95 E-value=5.5e-27 Score=258.83 Aligned_cols=343 Identities=11% Similarity=0.050 Sum_probs=205.8
Q ss_pred EEEEEeecCCCcccHHHHHHHHHHHHHCCCeEEEEeCCCCcccccccCCCceeeeeeccCCCcccccccccChHHHHHHH
Q 003222 16 LVFAYYVTGHGFGHATRVVEVVRNLISAGHDVHVVTGAPDFVFTSEIQSPRLFIRKVLLDCGAVQADALTVDRLASLEKY 95 (838)
Q Consensus 16 ~~Il~~v~g~G~GHv~r~laLA~~L~~~Gh~V~~v~~~~~~~~~~~i~~~~~~~~~~~~~~g~~~~~~~~~~~~~~l~~~ 95 (838)
|||++...| ..||++|+++||++|+++||+|+|++... +...+...++.+.+.......................+
T Consensus 1 mrIl~~~~g-t~Ghv~P~l~lA~~L~~rGh~V~~~t~~~---~~~~v~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (401)
T d1rrva_ 1 MRVLLSVCG-TRGDVEIGVALADRLKALGVQTRMCAPPA---AEERLAEVGVPHVPVGLPQHMMLQEGMPPPPPEEEQRL 76 (401)
T ss_dssp CEEEEEEES-CHHHHHHHHHHHHHHHHTTCEEEEEECGG---GHHHHHHHTCCEEECSCCGGGCCCTTSCCCCHHHHHHH
T ss_pred CeEEEECCC-ChhHHHHHHHHHHHHHHCCCEEEEEEChh---hHHHHHHCCCeEEEcCCcHHhhhccccccccHHHHHHH
Confidence 577776544 46999999999999999999999998742 12222111223333221111111111111111112222
Q ss_pred HHHhhccHHHHHHHHHHHHhcCCCcEEEECC--CchHHHHHHHhCCcEEEEecCchh----------------------H
Q 003222 96 SETAVAPRKSILKDEVEWLNSIKADLVVSDV--VPVACRAAADAGIRSVCVTNFSWD----------------------F 151 (838)
Q Consensus 96 ~~~~~~~~~~~l~~~~~~L~~~kPDlVVsD~--~~~~~~aA~~lgIP~V~is~~~~~----------------------~ 151 (838)
... ......+...+.++..+||+++.|. ..++..+|+.+++|.+........ .
T Consensus 77 ~~~---~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~a~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (401)
T d1rrva_ 77 AAM---TVEMQFDAVPGAAEGCAAVVAVGDLAAATGVRSVAEKLGLPFFYSVPSPVYLASPHLPPAYDEPTTPGVTDIRV 153 (401)
T ss_dssp HHH---HHHHHHHHHHHHTTTCSEEEEEECHHHHHHHHHHHHHHTCCEEEEESSGGGSCCSSSCCCBCSCCCTTCCCHHH
T ss_pred HHH---HHHHHHHHHHHHHhcCCCeEEEEcCchhhHHHHHHHHhCCCcccccccchhhcccccccccccccccccchhhh
Confidence 221 1222334445667889999999985 445677889999998776332100 0
Q ss_pred HHHhhhhhcccchHHHHHHHHhhccc-----------cc-eEEe-cCCCCCCCCCCceeecCcccc-cCCcChHHHHHHh
Q 003222 152 IYAEYVMAAGHHHRSIVWQIAEDYSH-----------CE-FLIR-LPGYCPMPAFRDVIDVPLVVR-RLHKSRKEVRKEL 217 (838)
Q Consensus 152 i~~~~~~~~~~~~~~i~~~l~~~y~~-----------~d-~ll~-~~~~~~~p~~~~v~~ip~~~~-~~~~~~~~~r~~l 217 (838)
.+...............+.....+.. .. ..+. .+.....+...++..+|+... .+...+.++.+++
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l 233 (401)
T d1rrva_ 154 LWEERAARFADRYGPTLNRRRAEIGLPPVEDVFGYGHGERPLLAADPVLAPLQPDVDAVQTGAWLLSDERPLPPELEAFL 233 (401)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCCCCSCHHHHTTCSSCEECSCTTTSCCCSSCCCEECCCCCCCCCCCCCHHHHHHH
T ss_pred hHHHHHHHHHhhhHHHHHHHHHHhCCcccchhhhhccccchhhcchhhhcccCCCCCeEEECCCcccccccCCHHHHHhh
Confidence 00000000000001111112111110 00 0111 111111222234555665443 3455666777776
Q ss_pred CCCCCCcEEEEEcCCCCch--hhhHH----hhCCCCc-EEEEeCCCCC---CCCCCeEECCCCCCHHHHHhhcCEEEecC
Q 003222 218 GIEDDVKLLILNFGGQPAG--WKLKE----EYLPSGW-KCLVCGASDS---QLPPNFIKLPKDAYTPDFMAASDCMLGKI 287 (838)
Q Consensus 218 ~~~~~~~~Vlvs~Gs~~~~--~~ll~----~l~~~~~-~~vv~G~~~~---~lp~nv~~~~~~~~~pdlLa~adl~It~g 287 (838)
. ...++||+++|+.... .++.+ .+...+. .+++.+.... .+|+|+++.+|.+ +.++|+++|+|||||
T Consensus 234 ~--~~~~~v~~~~gs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p-~~~ll~~~~~~I~hg 310 (401)
T d1rrva_ 234 A--AGSPPVHIGFGSSSGRGIADAAKVAVEAIRAQGRRVILSRGWTELVLPDDRDDCFAIDEVN-FQALFRRVAAVIHHG 310 (401)
T ss_dssp H--SSSCCEEECCTTCCSHHHHHHHHHHHHHHHHTTCCEEEECTTTTCCCSCCCTTEEEESSCC-HHHHGGGSSEEEECC
T ss_pred c--cCCCeEEEECCccccCCHHHHHHHHHHHHhhcCCeEEEeccccccccccCCCCEEEEeccC-cHHHhhhccEEEecC
Confidence 5 3567899999998763 22222 2222333 3334343322 2789999987654 459999999999999
Q ss_pred ChhhHHHHHHcCCcEEEEeCCCCCChHHHHHHHHHcCcEEEEecCCCChhhHHHHHHHHhhCCCCc--------cCCCCH
Q 003222 288 GYGTVSEALAYKLPFVFVRRDYFNEEPFLRNMLEFYQGGVEMIRRDLLTGHWKPYLERAISLKPCY--------EGGING 359 (838)
Q Consensus 288 G~~Tv~Eal~~GvP~l~iP~~~~~EQ~~Na~~l~~~G~g~~l~~~~~~~~~l~~~l~~ll~~~~~~--------~~~~~g 359 (838)
|+||++||+++|+|+|++| .+.||+.||+++++.|+|+.++..+++++.+.++|+++++++ .. ....+|
T Consensus 311 G~~t~~Eal~~GvP~l~~P--~~~DQ~~na~~v~~~G~g~~l~~~~~~~~~L~~ai~~vl~~~-~r~~a~~~~~~~~~~g 387 (401)
T d1rrva_ 311 SAGTEHVATRAGVPQLVIP--RNTDQPYFAGRVAALGIGVAHDGPTPTFESLSAALTTVLAPE-TRARAEAVAGMVLTDG 387 (401)
T ss_dssp CHHHHHHHHHHTCCEEECC--CSBTHHHHHHHHHHHTSEEECSSSCCCHHHHHHHHHHHTSHH-HHHHHHHHTTTCCCCH
T ss_pred CchHHHHHHHhCCCEEEec--ccccHHHHHHHHHHCCCEEEcCcCCCCHHHHHHHHHHHhCHH-HHHHHHHHHHHHhhcC
Confidence 9999999999999999999 678999999999999999999999999999999999998532 11 135689
Q ss_pred HHHHHHHHHHHh
Q 003222 360 GEVAAHILQETA 371 (838)
Q Consensus 360 ~~~~a~~i~~~~ 371 (838)
+.++|+.|++.+
T Consensus 388 ~~~aa~~ie~~~ 399 (401)
T d1rrva_ 388 AAAAADLVLAAV 399 (401)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 999999988764
|
| >d1kvka1 d.14.1.5 (A:1-225) Mevalonate kinase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ribosomal protein S5 domain 2-like superfamily: Ribosomal protein S5 domain 2-like family: GHMP Kinase, N-terminal domain domain: Mevalonate kinase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.94 E-value=6.7e-27 Score=240.15 Aligned_cols=190 Identities=21% Similarity=0.228 Sum_probs=122.8
Q ss_pred ceEEEEccccccccccccccCCCeeeccccccceEEEEEEcCCccchhhhhhhhccCCCCCCCCCeEEEEecc-cccCCC
Q 003222 496 EIFVARAPGRLDVMGGIADYSGSLVLQMPIREACHVALQKISPSKQRLWKHALARHNDKGQGPMPVLQIVSYG-SELSNR 574 (838)
Q Consensus 496 ~~~~~~APGRv~L~GeH~Dy~gg~vl~~ai~~~~~v~~~~~~d~~~~l~~~~~~~~~~~~~~~~~~i~i~s~~-~~~~~~ 574 (838)
+.++++|||||+|+|||+||+|++|+++||+++|++.+++++++++++.+.+. ..-...+.. ......
T Consensus 4 ~~~~vsAPGKv~L~GEh~v~~G~~al~~ai~~~~~v~v~~~~~~~v~i~s~~~-----------~~~~~~~~~~~~~~~~ 72 (225)
T d1kvka1 4 EVLLVSAPGKVILHGEHAVVHGKVALAVALNLRTFLVLRPQSNGKVSLNLPNV-----------GIKQVWDVATLQLLDT 72 (225)
T ss_dssp SCEEEEEEEEEEEECTTGGGGTCCEEEEEEEEEEEEEEEECSSSEEEEEETTT-----------TEEEEEEHHHHHTSCC
T ss_pred CeEEEEeceEEEEEeCceeecCCCEEEEEecccEEEEEEECCCCeEEEEECCC-----------CcceEEeccccccccc
Confidence 56789999999999999999999999999999999999999988777664421 110001100 000000
Q ss_pred CCceeccCCcccc-CCCCc-chhhhhcccCCC--CCCChhHHHHHHHHHHHHHhCCCCCCCEEEEEEeCCCCCCCCChHH
Q 003222 575 GPTFDMDLSDFMD-EGKPM-SYEKAKKYFDTN--PSQKWAAYVAGTILVLMTELGVRFEDSISMLVSSAVPEGKGVSSSA 650 (838)
Q Consensus 575 ~~~~~~~l~~~~~-~~~p~-~~~~~~~~~~~~--~~~~w~~y~~g~i~~~~~~~g~~~~~g~~i~i~s~iP~g~GLgSSA 650 (838)
.. ....+... ..+.. .......+.... ....|.+.+...+..+ ...... ..|+++.+.|++|.|+||||||
T Consensus 73 --~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~g~~i~i~s~lP~g~GLGSSA 147 (225)
T d1kvka1 73 --GF-LEQGDVPAPTLEQLEKLKKVAGLPRDCVGNEGLSLLAFLYLYLAI-CRKQRT-LPSLDIMVWSELPPGAGLGSSA 147 (225)
T ss_dssp -------------------CHHHHHHTSSCCCSCTTHHHHHHHHHHHHHH-HTTSSS-CCCEEEEEEESSCTTSSSCHHH
T ss_pred --cc-ccccccCcchhhhhhhHhhhhccccccchhhhhHHHHHHHHHHHH-hccccC-CCCeEEEEeCCCCCCcccccch
Confidence 00 00000000 00000 000001111111 0111222223322222 122333 3799999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCCC---------------CHHHHHHHHHHHHhhhcCCCCChhhHHHhhcCCC
Q 003222 651 SVEVASMSAIAAAHGLNI---------------HPRDLALLCQKVENHIVGAPCGVMDQMASACGEA 702 (838)
Q Consensus 651 A~~va~~~al~~l~~~~l---------------~~~ela~~a~~~E~~~~G~~~G~mDq~a~~~G~~ 702 (838)
|++||++.|++.+++... +.++++++||.+|+.++|++|| |||+++++||.
T Consensus 148 Al~va~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lA~~~E~~~~g~~SG-~D~a~~~~Gg~ 213 (225)
T d1kvka1 148 AYSVCVAAALLTACEEVTNPLKDRGSIGSWPEEDLKSINKWAYEGERVIHGNPSG-VDNSVSTWGGA 213 (225)
T ss_dssp HHHHHHHHHHHHHTTSSCCGGGGCCSEECCCHHHHHHHHHHHHHHHHHHHSSCCS-HHHHHHHHCSE
T ss_pred HHHHHHHHHHHHHhCcccCccccchhccccchhhHHHHHHHHHHHHHHhCCCCcH-HHHHHHhcCce
Confidence 999999999999999744 4578999999999999999999 89999999993
|
| >d2c1xa1 c.87.1.10 (A:7-456) UDP glucose:flavonoid 3-o-glucosyltransferase {Grape (Vitis vinifera) [TaxId: 29760]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: UDP-Glycosyltransferase/glycogen phosphorylase superfamily: UDP-Glycosyltransferase/glycogen phosphorylase family: UDPGT-like domain: UDP glucose:flavonoid 3-o-glucosyltransferase species: Grape (Vitis vinifera) [TaxId: 29760]
Probab=99.93 E-value=7.5e-25 Score=246.10 Aligned_cols=136 Identities=14% Similarity=0.208 Sum_probs=102.4
Q ss_pred hHHHHHHhCCCCCCcEEEEEcCCCCch-hh----hHHhhCCCCcEEEEe-C-CCC----CC----CCCCeEECCCCCCHH
Q 003222 210 RKEVRKELGIEDDVKLLILNFGGQPAG-WK----LKEEYLPSGWKCLVC-G-ASD----SQ----LPPNFIKLPKDAYTP 274 (838)
Q Consensus 210 ~~~~r~~l~~~~~~~~Vlvs~Gs~~~~-~~----ll~~l~~~~~~~vv~-G-~~~----~~----lp~nv~~~~~~~~~p 274 (838)
++++..++...+.+++||+++|+.... .+ ++..+...+..+++. + ... +. .+.|+.+.. |+|
T Consensus 252 ~~~~~~~~~~~~~~~~v~~s~gs~~~~~~~~~~~~~~~~~~~~~~vl~~~~~~~~~~l~~~~~~~~~~nv~~~~---~~p 328 (450)
T d2c1xa1 252 TTGCLQWLKERKPTSVVYISFGTVTTPPPAEVVALSEALEASRVPFIWSLRDKARVHLPEGFLEKTRGYGMVVP---WAP 328 (450)
T ss_dssp --CHHHHHHTSCTTCEEEEECCSSCCCCHHHHHHHHHHHHHHTCCEEEECCGGGGGGSCTTHHHHHTTTEEEES---CCC
T ss_pred hhhhccccccCCccceeeecccccccCCHHHHHHHHHHHHhcCCeEEEEECCCccccCChhhhhhccccccccc---cCC
Confidence 344556666556788999999988653 22 222332233333332 2 111 11 467888754 555
Q ss_pred --HHH--hhcCEEEecCChhhHHHHHHcCCcEEEEeCCCCCChHHHHHHHHH-cCcEEEEecCCCChhhHHHHHHHHhhC
Q 003222 275 --DFM--AASDCMLGKIGYGTVSEALAYKLPFVFVRRDYFNEEPFLRNMLEF-YQGGVEMIRRDLLTGHWKPYLERAISL 349 (838)
Q Consensus 275 --dlL--a~adl~It~gG~~Tv~Eal~~GvP~l~iP~~~~~EQ~~Na~~l~~-~G~g~~l~~~~~~~~~l~~~l~~ll~~ 349 (838)
++| +++++||||||+||++||+++|||||++| .+.||+.||+++++ .|+|+.++..+++++.+.++|+++|++
T Consensus 329 q~~lL~hp~~~~fItHGG~~s~~eal~~GvP~v~~P--~~~DQ~~na~rv~~~~G~G~~l~~~~~t~~~l~~ai~~vL~d 406 (450)
T d2c1xa1 329 QAEVLAHEAVGAFVTHCGWNSLWESVAGGVPLICRP--FFGDQRLNGRMVEDVLEIGVRIEGGVFTKSGLMSCFDQILSQ 406 (450)
T ss_dssp HHHHHTSTTEEEEEECCCHHHHHHHHHHTCCEEECC--CSTTHHHHHHHHHHTSCCEEECGGGSCCHHHHHHHHHHHHHS
T ss_pred hHhhhccCceeEEEccCCccHHHHHHHcCCCEEecc--cccchHHHHHHHHHHcCcEEEecCCCcCHHHHHHHHHHHhcC
Confidence 788 56999999999999999999999999999 78999999999976 699999999999999999999999988
Q ss_pred C
Q 003222 350 K 350 (838)
Q Consensus 350 ~ 350 (838)
+
T Consensus 407 ~ 407 (450)
T d2c1xa1 407 E 407 (450)
T ss_dssp H
T ss_pred c
Confidence 6
|
| >d1f0ka_ c.87.1.2 (A:) Peptidoglycan biosynthesis glycosyltransferase MurG {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: UDP-Glycosyltransferase/glycogen phosphorylase superfamily: UDP-Glycosyltransferase/glycogen phosphorylase family: Peptidoglycan biosynthesis glycosyltransferase MurG domain: Peptidoglycan biosynthesis glycosyltransferase MurG species: Escherichia coli [TaxId: 562]
Probab=99.93 E-value=7.5e-25 Score=237.76 Aligned_cols=320 Identities=16% Similarity=0.023 Sum_probs=189.5
Q ss_pred EEEEeecCCCcccHHHHHHHHHHHHHCCCeEEEEeCCCCcccccccCCCceeeeeeccCCCcccccccccChHHHHHHHH
Q 003222 17 VFAYYVTGHGFGHATRVVEVVRNLISAGHDVHVVTGAPDFVFTSEIQSPRLFIRKVLLDCGAVQADALTVDRLASLEKYS 96 (838)
Q Consensus 17 ~Il~~v~g~G~GHv~r~laLA~~L~~~Gh~V~~v~~~~~~~~~~~i~~~~~~~~~~~~~~g~~~~~~~~~~~~~~l~~~~ 96 (838)
||++...|.| ||++||++|+++|+++||+|+|++.... ...+.++..++.+... ...++... ..........
T Consensus 2 kili~~~GtG-GHv~~a~al~~~L~~~G~eV~~i~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~-----~~~~~~~~~~ 73 (351)
T d1f0ka_ 2 RLMVMAGGTG-GHVFPGLAVAHHLMAQGWQVRWLGTADR-MEADLVPKHGIEIDFI-RISGLRGK-----GIKALIAAPL 73 (351)
T ss_dssp EEEEECCSSH-HHHHHHHHHHHHHHTTTCEEEEEECTTS-THHHHGGGGTCEEEEC-CCCCCTTC-----CHHHHHTCHH
T ss_pred EEEEEcCCcH-HHHHHHHHHHHHHHhCCCEEEEEEeCCc-chhhcccccCCcEEEE-ECCCcCCC-----CHHHHHHHHH
Confidence 4555666667 9999999999999999999999976432 1111221112222221 00111100 0111111011
Q ss_pred HHhhccHHHHHHHHHHHHhcCCCcEEEECC---CchHHHHHHHhCCcEEEEecCchhHHHHhhhhhcccchHHHHHHHHh
Q 003222 97 ETAVAPRKSILKDEVEWLNSIKADLVVSDV---VPVACRAAADAGIRSVCVTNFSWDFIYAEYVMAAGHHHRSIVWQIAE 173 (838)
Q Consensus 97 ~~~~~~~~~~l~~~~~~L~~~kPDlVVsD~---~~~~~~aA~~lgIP~V~is~~~~~~i~~~~~~~~~~~~~~i~~~l~~ 173 (838)
.....+.....++++++||++++.. .+.+...+..+++|++.+.+..|...... ...
T Consensus 74 -----~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~a~~~~ip~~~~~~~~~~~~~~~---------------~~~ 133 (351)
T d1f0ka_ 74 -----RIFNAWRQARAIMKAYKPDVVLGMGGYVSGPGGLAAWSLGIPVVLHEQNGIAGLTNK---------------WLA 133 (351)
T ss_dssp -----HHHHHHHHHHHHHHHHCCSEEEECSSTTHHHHHHHHHHTTCCEEEEECSSSCCHHHH---------------HHT
T ss_pred -----HHHHhHHHHHHHhhccccceeeecccchhhhhhhhhhhcccceeecccccccchhHH---------------Hhh
Confidence 1122344556788999999999864 34456678889999998865332211000 001
Q ss_pred hccccceEEecCCCCCCCCCCceeecCcccc--cCCcChHHHHHHhCCCCCCcEEEEEcCCCCch--hh-hHHhh--CCC
Q 003222 174 DYSHCEFLIRLPGYCPMPAFRDVIDVPLVVR--RLHKSRKEVRKELGIEDDVKLLILNFGGQPAG--WK-LKEEY--LPS 246 (838)
Q Consensus 174 ~y~~~d~ll~~~~~~~~p~~~~v~~ip~~~~--~~~~~~~~~r~~l~~~~~~~~Vlvs~Gs~~~~--~~-ll~~l--~~~ 246 (838)
.+ .+....... +.......++.... ...... .. +......+...+++.+||.+.. .+ +.+.+ +..
T Consensus 134 ~~--~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~i~~~~gs~g~~~~~~~~~~~~~~l~~ 205 (351)
T d1f0ka_ 134 KI--ATKVMQAFP----GAFPNAEVVGNPVRTDVLALPL-PQ-QRLAGREGPVRVLVVGGSQGARILNQTMPQVAAKLGD 205 (351)
T ss_dssp TT--CSEEEESST----TSSSSCEECCCCCCHHHHTSCC-HH-HHHTTCCSSEEEEEECTTTCCHHHHHHHHHHHHHHGG
T ss_pred hh--cceeecccc----ccccceeEEcCCcccccccchh-HH-hhhhcccCCcccccccccchhhhhHHHHHHhhhhhcc
Confidence 11 111111111 01111112221111 111111 11 2223334566788888888864 12 22211 122
Q ss_pred CcEEEEeCCCCC----------CCCCCeEECCCCCCHHHHHhhcCEEEecCChhhHHHHHHcCCcEEEEeCC-CCCChHH
Q 003222 247 GWKCLVCGASDS----------QLPPNFIKLPKDAYTPDFMAASDCMLGKIGYGTVSEALAYKLPFVFVRRD-YFNEEPF 315 (838)
Q Consensus 247 ~~~~vv~G~~~~----------~lp~nv~~~~~~~~~pdlLa~adl~It~gG~~Tv~Eal~~GvP~l~iP~~-~~~EQ~~ 315 (838)
....++.+.... ..+.|+.+.+|.+.++++|+.||++|||||++|++|++++|+|+|++|.. ...||..
T Consensus 206 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~~~~~lm~~adl~It~~G~~T~~Eal~~g~P~I~iP~~~~~~~Q~~ 285 (351)
T d1f0ka_ 206 SVTIWHQSGKGSQQSVEQAYAEAGQPQHKVTEFIDDMAAAYAWADVVVCRSGALTVSEIAAAGLPALFVPFQHKDRQQYW 285 (351)
T ss_dssp GEEEEEECCTTCHHHHHHHHHHTTCTTSEEESCCSCHHHHHHHCSEEEECCCHHHHHHHHHHTCCEEECCCCCTTCHHHH
T ss_pred cceeeeeccccchhhhhhhhcccccccceeeeehhhHHHHHHhCchhhccccchHHHHHHHhCCceeeeecccCCchHHH
Confidence 233444443321 14678888999999999999999999999999999999999999999964 2257999
Q ss_pred HHHHHHHcCcEEEEecCCCChhhHHHHHHHHhhCCC-C-----c-cCCCCHHHHHHHHHHHHhc
Q 003222 316 LRNMLEFYQGGVEMIRRDLLTGHWKPYLERAISLKP-C-----Y-EGGINGGEVAAHILQETAI 372 (838)
Q Consensus 316 Na~~l~~~G~g~~l~~~~~~~~~l~~~l~~ll~~~~-~-----~-~~~~~g~~~~a~~i~~~~~ 372 (838)
||++++++|+|+.++..+++.+.+.++|.++..+.. . . ...++|++++|+.|++++.
T Consensus 286 NA~~l~~~G~~~~~~~~~~~~e~l~~~l~~l~~~~~~~~~~~~~~~~~~~~a~~i~~~i~~l~~ 349 (351)
T d1f0ka_ 286 NALPLEKAGAAKIIEQPQLSVDAVANTLAGWSRETLLTMAERARAASIPDATERVANEVSRVAR 349 (351)
T ss_dssp HHHHHHHTTSEEECCGGGCCHHHHHHHHHTCCHHHHHHHHHHHHHTCCTTHHHHHHHHHHHHHT
T ss_pred HHHHHHHCCCEEEechhhCCHHHHHHHHHhhCHHHHHHHHHHHHccCCccHHHHHHHHHHHHHh
Confidence 999999999999999888888888877765422210 0 0 1477899999999999853
|
| >d1pn3a_ c.87.1.5 (A:) TDP-epi-vancosaminyltransferase GtfA {Amycolatopsis orientalis [TaxId: 31958]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: UDP-Glycosyltransferase/glycogen phosphorylase superfamily: UDP-Glycosyltransferase/glycogen phosphorylase family: Gtf glycosyltransferase domain: TDP-epi-vancosaminyltransferase GtfA species: Amycolatopsis orientalis [TaxId: 31958]
Probab=99.92 E-value=1.4e-24 Score=238.55 Aligned_cols=341 Identities=13% Similarity=0.064 Sum_probs=193.2
Q ss_pred EEEEEeecCCCcccHHHHHHHHHHHHHCCCeEEEEeCCCCcccccccCCCceeeeeeccCCCcc-c-ccccccChHHHHH
Q 003222 16 LVFAYYVTGHGFGHATRVVEVVRNLISAGHDVHVVTGAPDFVFTSEIQSPRLFIRKVLLDCGAV-Q-ADALTVDRLASLE 93 (838)
Q Consensus 16 ~~Il~~v~g~G~GHv~r~laLA~~L~~~Gh~V~~v~~~~~~~~~~~i~~~~~~~~~~~~~~g~~-~-~~~~~~~~~~~l~ 93 (838)
|+|+|...|. .||+.|+++||++|+++||+|+|++... +...+...++.+.+........ . ...........+.
T Consensus 1 mril~~~~gt-~Ghi~P~laLA~~L~~rGh~V~~~~~~~---~~~~v~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (391)
T d1pn3a_ 1 MRVLITGCGS-RGDTEPLVALAARLRELGADARMCLPPD---YVERCAEVGVPMVPVGRAVRAGAREPGELPPGAAEVVT 76 (391)
T ss_dssp CEEEEEEESS-HHHHHHHHHHHHHHHHTTCEEEEEECGG---GHHHHHHHTCCEEECSSCSSGGGSCTTCCCTTCGGGHH
T ss_pred CEEEEEcCCC-hhHHHHHHHHHHHHHHCCCEEEEEEChh---hHhHHHHCCCeEEECCccHHHHhhChhhhhHHHHHHHH
Confidence 5776654333 4999999999999999999999998643 2222211122333321111110 0 0101111111111
Q ss_pred HHHHHhhccHHHHHHHHHHHHhcCCCcEEEECC-Cc---hHHHHHHHhCCcEEEEecCchh-------HHHHhhhhhccc
Q 003222 94 KYSETAVAPRKSILKDEVEWLNSIKADLVVSDV-VP---VACRAAADAGIRSVCVTNFSWD-------FIYAEYVMAAGH 162 (838)
Q Consensus 94 ~~~~~~~~~~~~~l~~~~~~L~~~kPDlVVsD~-~~---~~~~aA~~lgIP~V~is~~~~~-------~i~~~~~~~~~~ 162 (838)
.+ ....++...+.+ .+||+||+|. .+ ++..+|..+++|.+......+. ..+..+......
T Consensus 77 ~~-------~~~~~~~l~~~~--~~~D~vi~~~~~~~~~~~~~~a~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (391)
T d1pn3a_ 77 EV-------VAEWFDKVPAAI--EGCDAVVTTGLLPAAVAVRSMAEKLGIPYRYTVLSPDHLPSEQSQAERDMYNQGADR 147 (391)
T ss_dssp HH-------HHHHHHHHHHHH--TTCSEEEEEECHHHHHHHHHHHHHHTCCEEEEESSGGGSGGGSCHHHHHHHHHHHHH
T ss_pred HH-------HHHHHHHHHHHh--cCCCeEEEcccCchHHHHHHHHHHcCCceEEeeccccccccccccchhhHHHHHHHH
Confidence 11 111222222222 3699999985 33 3455778899999887432211 000000000000
Q ss_pred chHHHHHHHHhhccc-----------c-ceEEecCCCC--CCCCCCceeecCcccc-cCCcChHHHHHHhCCCCCCcEEE
Q 003222 163 HHRSIVWQIAEDYSH-----------C-EFLIRLPGYC--PMPAFRDVIDVPLVVR-RLHKSRKEVRKELGIEDDVKLLI 227 (838)
Q Consensus 163 ~~~~i~~~l~~~y~~-----------~-d~ll~~~~~~--~~p~~~~v~~ip~~~~-~~~~~~~~~r~~l~~~~~~~~Vl 227 (838)
......+........ . ..++...+.. ..+.....+.+++... .+...+.++..+.. ...+.|+
T Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~--~~~~~v~ 225 (391)
T d1pn3a_ 148 LFGDAVNSHRASIGLPPVEHLYDYGYTDQPWLAADPVLSPLRPTDLGTVQTGAWILPDERPLSAELEAFLA--AGSTPVY 225 (391)
T ss_dssp HTHHHHHHHHHTTSCCCCCCHHHHHHCSSCEECSCTTTSCCCTTCCSCCBCCCCCCCCCCCCCHHHHHHTT--SSSCCEE
T ss_pred HHHHHHHHHHHHhcCcccccccccccccceeeccchhhhccCCCCCCeeeecCcccCccccCCHHHhhhhc--cCCCeEE
Confidence 000111111111100 0 0111111100 1111123334444333 33444556666554 3456789
Q ss_pred EEcCCCCch--hhhH----HhhCCCCcEEEEe-CCCCC---CCCCCeEECCCCCCHHHHHhhcCEEEecCChhhHHHHHH
Q 003222 228 LNFGGQPAG--WKLK----EEYLPSGWKCLVC-GASDS---QLPPNFIKLPKDAYTPDFMAASDCMLGKIGYGTVSEALA 297 (838)
Q Consensus 228 vs~Gs~~~~--~~ll----~~l~~~~~~~vv~-G~~~~---~lp~nv~~~~~~~~~pdlLa~adl~It~gG~~Tv~Eal~ 297 (838)
+++|+.... .++. ..+...++.+++. +.... ..++|+.+.+|.+ ++++|+++|+||||||+||++||++
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~i~~~~p-~~~ll~~a~~~v~hgG~~t~~Eal~ 304 (391)
T d1pn3a_ 226 VGFGSSSRPATADAAKMAIKAVRASGRRIVLSRGWADLVLPDDGADCFVVGEVN-LQELFGRVAAAIHHDSAGTTLLAMR 304 (391)
T ss_dssp EECTTCCSTHHHHHHHHHHHHHHHTTCCEEEECTTTTCCCSSCCTTCCEESSCC-HHHHHTTSSCEEEESCHHHHHHHHH
T ss_pred EeccccccccHHHHHHHHHHHHHhcCCEEEEeccccccccccCCCCEEEecccC-HHHHHhhccEEEecCchHHHHHHHH
Confidence 999987653 2222 2233344443433 32221 2689999988764 6799999999999999999999999
Q ss_pred cCCcEEEEeCCC--CCChHHHHHHHHHcCcEEEEecCCCChhhHHHHHHHHhhCCCC-------ccCCCCHHHHHHHHHH
Q 003222 298 YKLPFVFVRRDY--FNEEPFLRNMLEFYQGGVEMIRRDLLTGHWKPYLERAISLKPC-------YEGGINGGEVAAHILQ 368 (838)
Q Consensus 298 ~GvP~l~iP~~~--~~EQ~~Na~~l~~~G~g~~l~~~~~~~~~l~~~l~~ll~~~~~-------~~~~~~g~~~~a~~i~ 368 (838)
+|+|+|++|... ..||+.||+++++.|+|+.++..+++++.+.++|++++++.-+ ...+.+|+.++|+.|+
T Consensus 305 ~G~P~v~~P~~~d~~~eQ~~nA~~l~~~G~g~~l~~~~~~~~~l~~~i~~~l~~~~r~~a~~~a~~~~~~g~~~aa~~i~ 384 (391)
T d1pn3a_ 305 AGIPQIVVRRVVDNVVEQAYHADRVAELGVGVAVDGPVPTIDSLSAALDTALAPEIRARATTVADTIRADGTTVAAQLLF 384 (391)
T ss_dssp HTCCEEEECSSCCBTTBCCHHHHHHHHHTSEEEECCSSCCHHHHHHHHHHHTSTTHHHHHHHHGGGSCSCHHHHHHHHHH
T ss_pred hCCcEEEeccccCCcchHHHHHHHHHHCCCEEEcCcCCCCHHHHHHHHHHHhCHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 999999999532 2459999999999999999999999999999999999964210 0145689999999998
Q ss_pred HHhc
Q 003222 369 ETAI 372 (838)
Q Consensus 369 ~~~~ 372 (838)
+++.
T Consensus 385 ~~l~ 388 (391)
T d1pn3a_ 385 DAVS 388 (391)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8864
|
| >d1iira_ c.87.1.5 (A:) UDP-glucosyltransferase GtfB {Amycolatopsis orientalis [TaxId: 31958]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: UDP-Glycosyltransferase/glycogen phosphorylase superfamily: UDP-Glycosyltransferase/glycogen phosphorylase family: Gtf glycosyltransferase domain: UDP-glucosyltransferase GtfB species: Amycolatopsis orientalis [TaxId: 31958]
Probab=99.92 E-value=5.9e-24 Score=233.48 Aligned_cols=160 Identities=15% Similarity=0.124 Sum_probs=116.3
Q ss_pred CCcChHHHHHHhCCCCCCcEEEEEcCCCCchhh----hHHhhCCCCcEEE-EeCCCCC---CCCCCeEECCCCCCHHHHH
Q 003222 206 LHKSRKEVRKELGIEDDVKLLILNFGGQPAGWK----LKEEYLPSGWKCL-VCGASDS---QLPPNFIKLPKDAYTPDFM 277 (838)
Q Consensus 206 ~~~~~~~~r~~l~~~~~~~~Vlvs~Gs~~~~~~----ll~~l~~~~~~~v-v~G~~~~---~lp~nv~~~~~~~~~pdlL 277 (838)
....+.+...++. ..+++|++++|+...... +...+...+..++ +.+.... ..|+|+++.+|.+ .+++|
T Consensus 223 ~~~~~~~~~~~~~--~~~~~i~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~nv~~~~~~p-~~~~l 299 (401)
T d1iira_ 223 ERPLSPELAAFLD--AGPPPVYLGFGSLGAPADAVRVAIDAIRAHGRRVILSRGWADLVLPDDGADCFAIGEVN-HQVLF 299 (401)
T ss_dssp CCCCCHHHHHHHH--TSSCCEEEECC---CCHHHHHHHHHHHHHTTCCEEECTTCTTCCCSSCGGGEEECSSCC-HHHHG
T ss_pred ccccCHHHHHhhc--cCCCeEEEccCccccchHHHHHHHHHHHHcCCeEEEeccCCccccccCCCCEEEEeccC-HHHHH
Confidence 3344455555554 355678999998776422 2333332333333 3343322 2689999988764 56999
Q ss_pred hhcCEEEecCChhhHHHHHHcCCcEEEEeCCCCCChHHHHHHHHHcCcEEEEecCCCChhhHHHHHHHHhhCCCCc----
Q 003222 278 AASDCMLGKIGYGTVSEALAYKLPFVFVRRDYFNEEPFLRNMLEFYQGGVEMIRRDLLTGHWKPYLERAISLKPCY---- 353 (838)
Q Consensus 278 a~adl~It~gG~~Tv~Eal~~GvP~l~iP~~~~~EQ~~Na~~l~~~G~g~~l~~~~~~~~~l~~~l~~ll~~~~~~---- 353 (838)
+++|+||||||+||++|++++|+|+|++| .+.||+.||+++++.|+|+.++..+++++.+.++|+++|+++ ..
T Consensus 300 ~~~~~~V~hgG~~t~~Eal~~GvP~v~~P--~~~DQ~~na~~l~~~G~g~~l~~~~~~~~~l~~ai~~~l~~~-~~~~a~ 376 (401)
T d1iira_ 300 GRVAAVIHHGGAGTTHVAARAGAPQILLP--QMADQPYYAGRVAELGVGVAHDGPIPTFDSLSAALATALTPE-THARAT 376 (401)
T ss_dssp GGSSEEEECCCHHHHHHHHHHTCCEEECC--CSTTHHHHHHHHHHHTSEEECSSSSCCHHHHHHHHHHHTSHH-HHHHHH
T ss_pred hhcCEEEecCCchHHHHHHHhCCCEEEcc--ccccHHHHHHHHHHCCCEEEcCcCCCCHHHHHHHHHHHhCHH-HHHHHH
Confidence 99999999999999999999999999999 678999999999999999999999999999999999999542 11
Q ss_pred ----cCCCCHHHHHHHHHHHHh
Q 003222 354 ----EGGINGGEVAAHILQETA 371 (838)
Q Consensus 354 ----~~~~~g~~~~a~~i~~~~ 371 (838)
....+|..++|+.|++.+
T Consensus 377 ~~~~~~~~~~~~~aa~~i~~~i 398 (401)
T d1iira_ 377 AVAGTIRTDGAAVAARLLLDAV 398 (401)
T ss_dssp HHHHHSCSCHHHHHHHHHHHHH
T ss_pred HHHHHHHhcChHHHHHHHHHHH
Confidence 034567777777777764
|
| >d1k47a1 d.14.1.5 (A:1-194) Phosphomevalonate kinase (PMK) {Streptococcus pneumoniae r6 [TaxId: 171101]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ribosomal protein S5 domain 2-like superfamily: Ribosomal protein S5 domain 2-like family: GHMP Kinase, N-terminal domain domain: Phosphomevalonate kinase (PMK) species: Streptococcus pneumoniae r6 [TaxId: 171101]
Probab=99.89 E-value=2.5e-23 Score=208.28 Aligned_cols=155 Identities=19% Similarity=0.148 Sum_probs=122.1
Q ss_pred eEEEEccccccccccccccC-CCeeeccccccceEEEEEEcCCccchhhhhhhhccCCCCCCCCCeEEEEecccccCCCC
Q 003222 497 IFVARAPGRLDVMGGIADYS-GSLVLQMPIREACHVALQKISPSKQRLWKHALARHNDKGQGPMPVLQIVSYGSELSNRG 575 (838)
Q Consensus 497 ~~~~~APGRv~L~GeH~Dy~-gg~vl~~ai~~~~~v~~~~~~d~~~~l~~~~~~~~~~~~~~~~~~i~i~s~~~~~~~~~ 575 (838)
++.++|||||.|+|||++++ |++++++|||+++++.++++++.++. ..+..
T Consensus 1 mi~v~apGK~iL~GE~aVv~~G~~ala~ai~~~~~v~v~~~~~~~i~---------------------~~~~~------- 52 (194)
T d1k47a1 1 MIAVKTCGKLYWAGEYAILEPGQLALIKDIPIYMRAEIAFSDSYRIY---------------------SDMFD------- 52 (194)
T ss_dssp CEEEEEEEEEEEECTTGGGSTTCEEEEEEEEEEEEEEEEECSSCEEE---------------------EEC---------
T ss_pred CeEEEeCcEEEEEeeeEEecCCCeEEEEEEeceEEEEEEECCCceEE---------------------eeccc-------
Confidence 46789999999999999986 99999999999999999988765322 11110
Q ss_pred CceeccCCccccCCCCcchhhhhcccCCCCCCChhHHHHHHHHHHHHHhCCCCCCCEEEEEEeCCCCCC---CCChHHHH
Q 003222 576 PTFDMDLSDFMDEGKPMSYEKAKKYFDTNPSQKWAAYVAGTILVLMTELGVRFEDSISMLVSSAVPEGK---GVSSSASV 652 (838)
Q Consensus 576 ~~~~~~l~~~~~~~~p~~~~~~~~~~~~~~~~~w~~y~~g~i~~~~~~~g~~~~~g~~i~i~s~iP~g~---GLgSSAA~ 652 (838)
+..++.. ++...|.......+..+++..+... .|+++.|.|++|.++ |||||||+
T Consensus 53 --~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~i~s~ip~~~~~~GLGSSAA~ 110 (194)
T d1k47a1 53 --FAVDLRP-------------------NPDYSLIQETIALMGDFLAVRGQNL-RPFSLAIYGKMEREGKKFGLGSSGSV 110 (194)
T ss_dssp ----------------------------CCCHHHHHHHHHHHHHHHHHTTCCC-CCEEEEEESHHHHSTTSSCSCHHHHH
T ss_pred --ccccccc-------------------CcchhHHHHHHHHHHHHHHHcCCCC-CCeEEEEEccCccccCCCcccchHHH
Confidence 0011100 1112233333333445566677765 799999999999998 99999999
Q ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHhhhcCCCCChhhHHHhhcCCC
Q 003222 653 EVASMSAIAAAHGLNIHPRDLALLCQKVENHIVGAPCGVMDQMASACGEA 702 (838)
Q Consensus 653 ~va~~~al~~l~~~~l~~~ela~~a~~~E~~~~G~~~G~mDq~a~~~G~~ 702 (838)
+||++.|++.++++.+++.+++++|+.+|+.++|.+|| +|+++|.+||.
T Consensus 111 ~va~~~al~~~~~~~ls~~~i~~lA~~~e~~~~g~~SG-~D~a~s~~GG~ 159 (194)
T d1k47a1 111 VVLVVKALLALYNLSVDQNLLFKLTSAVLLKRGDNGSM-GDLACIAAEDL 159 (194)
T ss_dssp HHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTTCCSCC-HHHHHHHHTSC
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhccCCCc-cchhHHHcCCe
Confidence 99999999999999999999999999999999999999 79999999995
|
| >d2acva1 c.87.1.10 (A:3-463) Triterpene UDP-glucosyl transferase UGT71G1 {Medicago truncatula [TaxId: 3880]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: UDP-Glycosyltransferase/glycogen phosphorylase superfamily: UDP-Glycosyltransferase/glycogen phosphorylase family: UDPGT-like domain: Triterpene UDP-glucosyl transferase UGT71G1 species: Medicago truncatula [TaxId: 3880]
Probab=99.88 E-value=1.2e-21 Score=219.41 Aligned_cols=339 Identities=13% Similarity=0.083 Sum_probs=184.3
Q ss_pred eEEEEEeecCCCcccHHHHHHHHHHHHHCCCeEEE--EeCCCCc--cccccc-----CCCceeeeeeccCCCcccccccc
Q 003222 15 HLVFAYYVTGHGFGHATRVVEVVRNLISAGHDVHV--VTGAPDF--VFTSEI-----QSPRLFIRKVLLDCGAVQADALT 85 (838)
Q Consensus 15 ~~~Il~~v~g~G~GHv~r~laLA~~L~~~Gh~V~~--v~~~~~~--~~~~~i-----~~~~~~~~~~~~~~g~~~~~~~~ 85 (838)
..+|+| ++.++.||++|+++||++|+++||+|++ ++..... ...... ..+.+.+... ..+........
T Consensus 7 ~~hil~-~p~P~~GH~~P~l~lA~~L~~rGH~V~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~ 83 (461)
T d2acva1 7 NSELIF-IPAPGIGHLASALEFAKLLTNHDKNLYITVFCIKFPGMPFADSYIKSVLASQPQIQLIDL--PEVEPPPQELL 83 (461)
T ss_dssp CEEEEE-ECCSSTTTHHHHHHHHHHHHHTCTTEEEEEEECCCTTCCCCHHHHHHHHCSCTTEEEEEC--CCCCCCCGGGG
T ss_pred CCeEEE-ecChhhhHHHHHHHHHHHHHHCCCCeEEEEEeCCccchhhhhhcccccccCCCCeeEEEC--CCCCCchhhhh
Confidence 346654 5788899999999999999999999865 4432211 011100 0112222221 11111000011
Q ss_pred cChHHHHHHHHHHhhccHHHHHHHHHHHHhcCCCcEEEECC-CchHHHHHHHhCCcEEEEecCchh--HHHHhhhhh---
Q 003222 86 VDRLASLEKYSETAVAPRKSILKDEVEWLNSIKADLVVSDV-VPVACRAAADAGIRSVCVTNFSWD--FIYAEYVMA--- 159 (838)
Q Consensus 86 ~~~~~~l~~~~~~~~~~~~~~l~~~~~~L~~~kPDlVVsD~-~~~~~~aA~~lgIP~V~is~~~~~--~i~~~~~~~--- 159 (838)
......+..+.+ .....+.+..+.+...++|+|+.|. .+++..+|+.+++|.+........ ..+..+...
T Consensus 84 ~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~d~vi~d~~~~~~~~~a~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 159 (461)
T d2acva1 84 KSPEFYILTFLE----SLIPHVKATIKTILSNKVVGLVLDFFCVSMIDVGNEFGIPSYLFLTSNVGFLSLMLSLKNRQIE 159 (461)
T ss_dssp GSHHHHHHHHHH----HTHHHHHHHHHHHCCTTEEEEEEEGGGGGGHHHHHHTTCCEEEEESSCHHHHHHHHHGGGSCTT
T ss_pred hcHHHHHHHHHH----HHHHHHHHHHHHhccCCCeEEEEeccchHHHHHHHHhCCCeEEEecccchhhHHhhcccccccc
Confidence 111111111111 1222344556666778899999996 677888999999999877432210 000000000
Q ss_pred --------------cc------------------cchHHHHHHHHhhccccceEEecCC-----------CCCCCCCCce
Q 003222 160 --------------AG------------------HHHRSIVWQIAEDYSHCEFLIRLPG-----------YCPMPAFRDV 196 (838)
Q Consensus 160 --------------~~------------------~~~~~i~~~l~~~y~~~d~ll~~~~-----------~~~~p~~~~v 196 (838)
.. .................+.+..... ....+..+.+
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (461)
T d2acva1 160 EVFDDSDRDHQLLNIPGISNQVPSNVLPDACFNKDGGYIAYYKLAERFRDTKGIIVNTFSDLEQSSIDALYDHDEKIPPI 239 (461)
T ss_dssp CCCCCSSGGGCEECCTTCSSCEEGGGSCHHHHCTTTHHHHHHHHHHHHTTSSEEEESCCHHHHHHHHHHHHHHCTTSCCE
T ss_pred ccccccccccccccccccccchhhhhhhhhhhccchhHHHHHHHHHhhhccccccccccccccchhhhhhhhcccCCCCc
Confidence 00 0000000011111111111111000 0011222344
Q ss_pred eecCccccc--------CCcChHHHHHHhCCCCCCcEEEEEcCCCCch--hhhHH----hhCCCCcEEEEe-CCCC----
Q 003222 197 IDVPLVVRR--------LHKSRKEVRKELGIEDDVKLLILNFGGQPAG--WKLKE----EYLPSGWKCLVC-GASD---- 257 (838)
Q Consensus 197 ~~ip~~~~~--------~~~~~~~~r~~l~~~~~~~~Vlvs~Gs~~~~--~~ll~----~l~~~~~~~vv~-G~~~---- 257 (838)
+.+++.... ....++++.+++.......++++++|+.... .+.+. .+...+..+++. +...
T Consensus 240 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (461)
T d2acva1 240 YAVGPLLDLKGQPNPKLDQAQHDLILKWLDEQPDKSVVFLCFGSMGVSFGPSQIREIALGLKHSGVRFLWSNSAEKKVFP 319 (461)
T ss_dssp EECCCCCCSSCCCBTTBCHHHHHHHHHHHHTSCTTCEEEEECCSSCCCCCHHHHHHHHHHHHHHTCEEEEECCCCGGGSC
T ss_pred eeeccccccCCccCCCccccCcHHHHHHHhhCCccceeeeeccccccCCCHHHHHHHHHHHHhcCccEEEEeecccccCC
Confidence 444443221 1122345556666555667788888776542 22222 222233433332 2211
Q ss_pred CC------CCCCeEECCCCCCHHHHH--hhcCEEEecCChhhHHHHHHcCCcEEEEeCCCCCChHHHHHHH-HHcCcEEE
Q 003222 258 SQ------LPPNFIKLPKDAYTPDFM--AASDCMLGKIGYGTVSEALAYKLPFVFVRRDYFNEEPFLRNML-EFYQGGVE 328 (838)
Q Consensus 258 ~~------lp~nv~~~~~~~~~pdlL--a~adl~It~gG~~Tv~Eal~~GvP~l~iP~~~~~EQ~~Na~~l-~~~G~g~~ 328 (838)
.. .|.|+.+..+. +.++++ ++||+||||||+||++||+++|||||++| .+.||+.||+++ ++.|+|+.
T Consensus 320 ~~~~~~~~~~~n~~v~~~~-pq~~~l~~p~~~~fItHGG~gs~~eAl~~GVP~l~~P--~~~DQ~~nA~rlve~~G~G~~ 396 (461)
T d2acva1 320 EGFLEWMELEGKGMICGWA-PQVEVLAHKAIGGFVSHCGWNSILESMWFGVPILTWP--IYAEQQLNAFRLVKEWGVGLG 396 (461)
T ss_dssp TTHHHHHHHHCSEEEESSC-CHHHHHHSTTEEEEEECCCHHHHHHHHHTTCCEEECC--CSTTHHHHHHHHHHTSCCEEE
T ss_pred ccchhhhccCCCeEEEecC-CHHHHHhcccCCEEEecCCccHHHHHHHcCCCEEeCC--cccchHHHHHHHHHHhCceEE
Confidence 11 46788775543 455666 67999999999999999999999999999 899999999997 67899999
Q ss_pred EecCC------CChhhHHHHHHHHhhCCCCccCCCCHHHHHHHHHHHH
Q 003222 329 MIRRD------LLTGHWKPYLERAISLKPCYEGGINGGEVAAHILQET 370 (838)
Q Consensus 329 l~~~~------~~~~~l~~~l~~ll~~~~~~~~~~~g~~~~a~~i~~~ 370 (838)
+.... ++++.+.++|+++|++.+.| ++.|..|.+.
T Consensus 397 l~~~~~~~~~~~t~~~l~~a~~~vl~~d~~~-------r~~a~~l~~~ 437 (461)
T d2acva1 397 LRVDYRKGSDVVAAEEIEKGLKDLMDKDSIV-------HKKVQEMKEM 437 (461)
T ss_dssp SCSSCCTTCCCCCHHHHHHHHHHHTCTTCTH-------HHHHHHHHHH
T ss_pred eeccccccCCccCHHHHHHHHHHHhhCCHHH-------HHHHHHHHHH
Confidence 87543 78899999999999754333 4444555544
|
| >d2pq6a1 c.87.1.10 (A:8-480) (Iso)flavonoid glycosyltransferase {Medicago truncatula [TaxId: 3880]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: UDP-Glycosyltransferase/glycogen phosphorylase superfamily: UDP-Glycosyltransferase/glycogen phosphorylase family: UDPGT-like domain: (Iso)flavonoid glycosyltransferase species: Medicago truncatula [TaxId: 3880]
Probab=99.88 E-value=1.3e-21 Score=219.77 Aligned_cols=147 Identities=12% Similarity=0.146 Sum_probs=105.6
Q ss_pred HHHhCCCCCCcEEEEEcCCCCch-h----hhHHhhCCCCcEEEE-eCCCCC--C-----------CCCCeEECCCCCCHH
Q 003222 214 RKELGIEDDVKLLILNFGGQPAG-W----KLKEEYLPSGWKCLV-CGASDS--Q-----------LPPNFIKLPKDAYTP 274 (838)
Q Consensus 214 r~~l~~~~~~~~Vlvs~Gs~~~~-~----~ll~~l~~~~~~~vv-~G~~~~--~-----------lp~nv~~~~~~~~~p 274 (838)
..++.......++++++|+.... . .+...+......+++ ++.... . .+.|+++.. |+|
T Consensus 279 ~~~~~~~~~~~~v~~~~gs~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~Nv~~~~---~~P 355 (473)
T d2pq6a1 279 LDWLESKEPGSVVYVNFGSTTVMTPEQLLEFAWGLANCKKSFLWIIRPDLVIGGSVIFSSEFTNEIADRGLIAS---WCP 355 (473)
T ss_dssp HHHHTTSCTTCEEEEECCSSSCCCHHHHHHHHHHHHHTTCEEEEECCGGGSTTTGGGSCHHHHHHHTTTEEEES---CCC
T ss_pred HHHhhhcCCCceeeeccCccccccHHHHHHHHHHHHhcCCeEEEEEccCCcccccccCcccchhhccCceEEee---eCC
Confidence 34455555677899999988753 1 223333333444443 332211 0 357998864 555
Q ss_pred --HHH--hhcCEEEecCChhhHHHHHHcCCcEEEEeCCCCCChHHHHHHHH-HcCcEEEEecCCCChhhHHHHHHHHhhC
Q 003222 275 --DFM--AASDCMLGKIGYGTVSEALAYKLPFVFVRRDYFNEEPFLRNMLE-FYQGGVEMIRRDLLTGHWKPYLERAISL 349 (838)
Q Consensus 275 --dlL--a~adl~It~gG~~Tv~Eal~~GvP~l~iP~~~~~EQ~~Na~~l~-~~G~g~~l~~~~~~~~~l~~~l~~ll~~ 349 (838)
++| ++|++||||||+||++||+++|||||++| .+.||+.||++++ +.|+|+.++ .+++++.+.++|+++|++
T Consensus 356 q~~lL~hp~~~~fItHGG~~s~~Eal~~GVP~lv~P--~~~DQ~~na~rv~~~~G~G~~l~-~~~t~~~l~~ai~~vl~d 432 (473)
T d2pq6a1 356 QDKVLNHPSIGGFLTHCGWNSTTESICAGVPMLCWP--FFADQPTDCRFICNEWEIGMEID-TNVKREELAKLINEVIAG 432 (473)
T ss_dssp HHHHHTSTTEEEEEECCCHHHHHHHHHHTCCEEECC--CSTTHHHHHHHHHHTSCCEEECC-SSCCHHHHHHHHHHHHTS
T ss_pred HHHHhcCCcCcEEEecCCccHHHHHHHcCCCEEecc--chhhhHHHHHHHHHHcCeEEeeC-CCcCHHHHHHHHHHHHcC
Confidence 788 57999999999999999999999999999 7899999999985 569999998 478999999999999987
Q ss_pred CCCccCCCCHHHHHHHHHHHHh
Q 003222 350 KPCYEGGINGGEVAAHILQETA 371 (838)
Q Consensus 350 ~~~~~~~~~g~~~~a~~i~~~~ 371 (838)
+. + ..+.+.|..|.+.+
T Consensus 433 ~~-~----~~~r~~a~~l~~~~ 449 (473)
T d2pq6a1 433 DK-G----KKMKQKAMELKKKA 449 (473)
T ss_dssp HH-H----HHHHHHHHHHHHHH
T ss_pred Ch-H----HHHHHHHHHHHHHH
Confidence 51 1 12445556666554
|
| >d2vcha1 c.87.1.10 (A:6-476) Hydroquinone glucosyltransferase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: UDP-Glycosyltransferase/glycogen phosphorylase superfamily: UDP-Glycosyltransferase/glycogen phosphorylase family: UDPGT-like domain: Hydroquinone glucosyltransferase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=99.87 E-value=2.7e-20 Score=208.91 Aligned_cols=152 Identities=16% Similarity=0.163 Sum_probs=106.2
Q ss_pred hHHHHHHhCCCCCCcEEEEEcCCCCch--hhh---HHhhCCCCcEEEE-eCCCC--------------C---CC------
Q 003222 210 RKEVRKELGIEDDVKLLILNFGGQPAG--WKL---KEEYLPSGWKCLV-CGASD--------------S---QL------ 260 (838)
Q Consensus 210 ~~~~r~~l~~~~~~~~Vlvs~Gs~~~~--~~l---l~~l~~~~~~~vv-~G~~~--------------~---~l------ 260 (838)
.++..+++......+++++++|+.... ..+ ...+......+++ .+... . .+
T Consensus 250 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~ 329 (471)
T d2vcha1 250 ESECLKWLDNQPLGSVLYVSFGSGGTLTCEQLNELALGLADSEQRFLWVIRSPSGIANSSYFDSHSQTDPLTFLPPGFLE 329 (471)
T ss_dssp -CHHHHHHHTSCTTCEEEEECTTTCCCCHHHHHHHHHHHHHTTCEEEEEECCCCSSTTTTTTCC--CSCGGGGSCTTHHH
T ss_pred chhHHHHHHhcCCccccccccccccCCCHHHHHHHHHHHHhhcCCeEEEeccccccccccccccccccchhhhCCchhhh
Confidence 346666776666778999999987753 111 1111112222222 11110 0 02
Q ss_pred ---CCCeEECCCCCCHH--HHHh--hcCEEEecCChhhHHHHHHcCCcEEEEeCCCCCChHHHHHHH-HHcCcEEEEecC
Q 003222 261 ---PPNFIKLPKDAYTP--DFMA--ASDCMLGKIGYGTVSEALAYKLPFVFVRRDYFNEEPFLRNML-EFYQGGVEMIRR 332 (838)
Q Consensus 261 ---p~nv~~~~~~~~~p--dlLa--~adl~It~gG~~Tv~Eal~~GvP~l~iP~~~~~EQ~~Na~~l-~~~G~g~~l~~~ 332 (838)
++||++. +|+| ++|+ +|++||||||+||++||+++|||||++| .+.||+.||+++ +..|+|+.+...
T Consensus 330 ~~~~~nv~~~---~w~Pq~~lL~hp~~~~fVtHGG~gS~~EAl~~GvP~v~~P--~~~DQ~~nA~rv~e~lG~Gv~l~~~ 404 (471)
T d2vcha1 330 RTKKRGFVIP---FWAPQAQVLAHPSTGGFLTHCGWNSTLESVVSGIPLIAWP--LYAEQKMNAVLLSEDIRAALRPRAG 404 (471)
T ss_dssp HTTTTEEEEE---SCCCHHHHHHSTTEEEEEECCCHHHHHHHHHHTCCEEECC--CSTTHHHHHHHHHHTTCCEECCCCC
T ss_pred hccCCCeeec---ccCCHHHHhcCccCCEEEecCCccHHHHHHHcCCCEEEcc--cccccHHHHHHHHHHheeEEEEecC
Confidence 4568875 4666 8895 6999999999999999999999999999 789999999999 557999988765
Q ss_pred C---CChhhHHHHHHHHhhCCCCccCCCCHHHHHHHHHHHHh
Q 003222 333 D---LLTGHWKPYLERAISLKPCYEGGINGGEVAAHILQETA 371 (838)
Q Consensus 333 ~---~~~~~l~~~l~~ll~~~~~~~~~~~g~~~~a~~i~~~~ 371 (838)
+ ++++.+.++|+++++++ ......+-|..|.+.+
T Consensus 405 ~~~~~t~~~l~~ai~~vl~~~-----~~~~~r~ra~~l~e~~ 441 (471)
T d2vcha1 405 DDGLVRREEVARVVKGLMEGE-----EGKGVRNKMKELKEAA 441 (471)
T ss_dssp TTSCCCHHHHHHHHHHHHTST-----HHHHHHHHHHHHHHHH
T ss_pred CCCcCCHHHHHHHHHHHhCCc-----HHHHHHHHHHHHHHHH
Confidence 4 78899999999999865 1124566666666554
|
| >d1h72c1 d.14.1.5 (C:5-167) Homoserine kinase {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ribosomal protein S5 domain 2-like superfamily: Ribosomal protein S5 domain 2-like family: GHMP Kinase, N-terminal domain domain: Homoserine kinase species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.55 E-value=4.9e-14 Score=135.75 Aligned_cols=141 Identities=17% Similarity=0.204 Sum_probs=109.6
Q ss_pred EEEEccccc-cccccccccCCCeeecccccc-ceEEEEEEcCCccchhhhhhhhccCCCCCCCCCeEEEEecccccCCCC
Q 003222 498 FVARAPGRL-DVMGGIADYSGSLVLQMPIRE-ACHVALQKISPSKQRLWKHALARHNDKGQGPMPVLQIVSYGSELSNRG 575 (838)
Q Consensus 498 ~~~~APGRv-~L~GeH~Dy~gg~vl~~ai~~-~~~v~~~~~~d~~~~l~~~~~~~~~~~~~~~~~~i~i~s~~~~~~~~~ 575 (838)
+.++||+.. || | .|--+|.+||+. +.++.+.++++.. +.+...
T Consensus 3 i~v~~Pas~aNl-g-----~GFD~lg~Al~~~~d~v~v~~~~~~~---------------------i~i~~~-------- 47 (163)
T d1h72c1 3 VRVKAPCTSANL-G-----VGFDVFGLCLKEPYDVIEVEAIDDKE---------------------IIIEVD-------- 47 (163)
T ss_dssp EEEEEEEEEECT-G-----GGTTTEEEEEEEEEEEEEEEEESSSS---------------------EEEEES--------
T ss_pred EEEEEeccHHhc-c-----ccHhHhhhhhcCCccEEEEEECCCCe---------------------EEEEec--------
Confidence 468999999 76 3 355688999985 7888888876533 222211
Q ss_pred CceeccCCccccCCCCcchhhhhcccCCCCCCChhHHHHHHHHHHHHHhCCCCCCCEEEEEEeCCCCCCCCChHHHHHHH
Q 003222 576 PTFDMDLSDFMDEGKPMSYEKAKKYFDTNPSQKWAAYVAGTILVLMTELGVRFEDSISMLVSSAVPEGKGVSSSASVEVA 655 (838)
Q Consensus 576 ~~~~~~l~~~~~~~~p~~~~~~~~~~~~~~~~~w~~y~~g~i~~~~~~~g~~~~~g~~i~i~s~iP~g~GLgSSAA~~va 655 (838)
-.. +.+ +...|++..++..+++..+.+ .|+++.+.++||.|+|||||||..+|
T Consensus 48 ------~~~-------i~~------------~~~~n~~~~~~~~~~~~~~~~--~~~~i~i~~~IP~gaGLGsSSA~a~a 100 (163)
T d1h72c1 48 ------DKN-------IPT------------DPDKNVAGIVAKKMIDDFNIG--KGVKITIKKGVKAGSGLGSSAASSAG 100 (163)
T ss_dssp ------CTT-------SCC------------CTTTSHHHHHHHHHHHHTTCC--CEEEEEEECSSCTTSSSCHHHHHHHH
T ss_pred ------Ccc-------cCC------------chhhhhHHHHHHHHHHhcCCC--CCEEEEEeeccccccccCccHHHHHH
Confidence 001 100 112456777777777666653 69999999999999999999999999
Q ss_pred HHHHHHHHhCCCCCHHHHHHHHHHHHhhhcCCCCChhhHH-HhhcCCC
Q 003222 656 SMSAIAAAHGLNIHPRDLALLCQKVENHIVGAPCGVMDQM-ASACGEA 702 (838)
Q Consensus 656 ~~~al~~l~~~~l~~~ela~~a~~~E~~~~G~~~G~mDq~-a~~~G~~ 702 (838)
++.|++.++++++++++++++|.++|....|.++| |++ +|++||.
T Consensus 101 ~l~aln~l~~~~ls~~~l~~~A~~~e~~~~g~~~g--ddv~~~~~GG~ 146 (163)
T d1h72c1 101 TAYAINELFKLNLDKLKLVDYASYGELASSGAKHA--DNVAPAIFGGF 146 (163)
T ss_dssp HHHHHHHHTTCCCCHHHHHHHHHHHHHHHHSSCCC--TTHHHHHHCSE
T ss_pred HHHHHHHHhCCCCCHHHHHHHHHHHHHhhcCCCCc--hHhHHHhhCCE
Confidence 99999999999999999999999999999999998 665 6889995
|
| >d2bisa1 c.87.1.8 (A:1-437) Glycogen synthase 1, GlgA {Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: UDP-Glycosyltransferase/glycogen phosphorylase superfamily: UDP-Glycosyltransferase/glycogen phosphorylase family: Glycosyl transferases group 1 domain: Glycogen synthase 1, GlgA species: Pyrococcus abyssi [TaxId: 29292]
Probab=98.70 E-value=6.2e-07 Score=97.64 Aligned_cols=128 Identities=13% Similarity=0.142 Sum_probs=82.6
Q ss_pred HHHHHhCCCCCCcEEEEEcCCCCc---hh-hhHHh---hCC----CCcEEEEeCCCCCC-----------CCCCeEECCC
Q 003222 212 EVRKELGIEDDVKLLILNFGGQPA---GW-KLKEE---YLP----SGWKCLVCGASDSQ-----------LPPNFIKLPK 269 (838)
Q Consensus 212 ~~r~~l~~~~~~~~Vlvs~Gs~~~---~~-~ll~~---l~~----~~~~~vv~G~~~~~-----------lp~nv~~~~~ 269 (838)
.+++.++.. + ..+++..|+... +. .++++ +.. +++.++++|...+. .+.++.+.++
T Consensus 239 ~~~~~~~~~-~-~~~i~~~G~~~~~~Kg~~~ll~a~~~~~~~~~~~~~~lvi~G~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (437)
T d2bisa1 239 SLLSKFGMD-E-GVTFMFIGRFDRGQKGVDVLLKAIEILSSKKEFQEMRFIIIGKGDPELEGWARSLEEKHGNVKVITEM 316 (437)
T ss_dssp HHHHHTTCC-S-CEEEEEESCBCSSSSCHHHHHHHHHHHTTSGGGGGEEEEEECCBCHHHHHHHHHHHHTCTTEEEECSC
T ss_pred hhhhhhhcc-C-CceEEEeecccccchhHHHHHhhhcccccccccccceeeeecccccccccchhhhccccccceecccc
Confidence 456667764 3 345677777643 22 23332 211 45788888876521 3445556565
Q ss_pred CC--CHHHHHhhcCEEEec----CChhhHHHHHHcCCcEEEEeCCCCCChHHHHHHHHHcCcEEEEecCCCChhhHHHHH
Q 003222 270 DA--YTPDFMAASDCMLGK----IGYGTVSEALAYKLPFVFVRRDYFNEEPFLRNMLEFYQGGVEMIRRDLLTGHWKPYL 343 (838)
Q Consensus 270 ~~--~~pdlLa~adl~It~----gG~~Tv~Eal~~GvP~l~iP~~~~~EQ~~Na~~l~~~G~g~~l~~~~~~~~~l~~~l 343 (838)
.+ .++.+++.+|+++.. +..+++.||+++|+|+|+.+... ..+.+ +.+.|..++..+ ++.+.++|
T Consensus 317 ~~~~~~~~~~~~adi~v~~s~~e~~~~~~~Eama~G~Pvi~~~~g~------~~e~i-~~~~G~~~~~~d--~~~la~~i 387 (437)
T d2bisa1 317 LSREFVRELYGSVDFVIIPSYFEPFGLVALEAMCLGAIPIASAVGG------LRDII-TNETGILVKAGD--PGELANAI 387 (437)
T ss_dssp CCHHHHHHHHTTCSEEEECCSCCSSCHHHHHHHTTTCEEEEESCTT------HHHHC-CTTTCEEECTTC--HHHHHHHH
T ss_pred CcHHHHHHHHhhhccccccccccccchHHHHHHHCCCCEEEeCCCC------cHHhE-ECCcEEEECCCC--HHHHHHHH
Confidence 43 366888999999964 33469999999999999976432 22333 346788887665 57899999
Q ss_pred HHHhhCC
Q 003222 344 ERAISLK 350 (838)
Q Consensus 344 ~~ll~~~ 350 (838)
.+++++.
T Consensus 388 ~~ll~~~ 394 (437)
T d2bisa1 388 LKALELS 394 (437)
T ss_dssp HHHHTTT
T ss_pred HHHHhCC
Confidence 9998643
|
| >d2iw1a1 c.87.1.8 (A:2-371) Lipopolysaccharide core biosynthesis protein RfaG {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: UDP-Glycosyltransferase/glycogen phosphorylase superfamily: UDP-Glycosyltransferase/glycogen phosphorylase family: Glycosyl transferases group 1 domain: Lipopolysaccharide core biosynthesis protein RfaG species: Escherichia coli [TaxId: 562]
Probab=98.59 E-value=1.7e-06 Score=90.98 Aligned_cols=133 Identities=20% Similarity=0.208 Sum_probs=90.3
Q ss_pred ChHHHHHHhCCCCCCcEEEEEcCCCCch---hhhHHhh--CC---CCc-EEEEeCCCCCC----------CCCCeEECCC
Q 003222 209 SRKEVRKELGIEDDVKLLILNFGGQPAG---WKLKEEY--LP---SGW-KCLVCGASDSQ----------LPPNFIKLPK 269 (838)
Q Consensus 209 ~~~~~r~~l~~~~~~~~Vlvs~Gs~~~~---~~ll~~l--~~---~~~-~~vv~G~~~~~----------lp~nv~~~~~ 269 (838)
.++..++.++++.++ .++++.|..... ..+++++ +. ++. .+++.|...+. ...+++++++
T Consensus 181 ~~~~~r~~~~~~~~~-~~i~~~gr~~~~Kg~~~li~a~~~l~~~~~~~~~~ii~g~~~~~~~~~~~~~~~~~~~v~~~g~ 259 (370)
T d2iw1a1 181 SREIYRQKNGIKEQQ-NLLLQVGSDFGRKGVDRSIEALASLPESLRHNTLLFVVGQDKPRKFEALAEKLGVRSNVHFFSG 259 (370)
T ss_dssp HHHHHHHHTTCCTTC-EEEEEECSCTTTTTHHHHHHHHHTSCHHHHHTEEEEEESSSCCHHHHHHHHHHTCGGGEEEESC
T ss_pred hhhhhhhccCCCccc-eEEEEEeccccccchhhhcccccccccccccceeeecccccccccccccccccccccccccccc
Confidence 355678888887544 567777877653 2334432 11 122 33344433321 3567888888
Q ss_pred CCCHHHHHhhcCEEEec----CChhhHHHHHHcCCcEEEEeCCCCCChHHHHHHHHHcCcEEEEe-cCCCChhhHHHHHH
Q 003222 270 DAYTPDFMAASDCMLGK----IGYGTVSEALAYKLPFVFVRRDYFNEEPFLRNMLEFYQGGVEMI-RRDLLTGHWKPYLE 344 (838)
Q Consensus 270 ~~~~pdlLa~adl~It~----gG~~Tv~Eal~~GvP~l~iP~~~~~EQ~~Na~~l~~~G~g~~l~-~~~~~~~~l~~~l~ 344 (838)
.++++++|+.||++|.- +-.+++.|||++|+|+|+.+.....| .+.+.+.|..+. ..+ ++.+.++|.
T Consensus 260 ~~~~~~~~~~adv~v~ps~~E~~~~~~~EAma~G~PvI~s~~~g~~e------~i~~~~~G~l~~~~~d--~~~la~~i~ 331 (370)
T d2iw1a1 260 RNDVSELMAAADLLLHPAYQEAAGIVLLEAITAGLPVLTTAVCGYAH------YIADANCGTVIAEPFS--QEQLNEVLR 331 (370)
T ss_dssp CSCHHHHHHHCSEEEECCSCCSSCHHHHHHHHHTCCEEEETTSTTTH------HHHHHTCEEEECSSCC--HHHHHHHHH
T ss_pred ccccccccccccccccccccccccceeeecccCCeeEEEeCCCChHH------HhcCCCceEEEcCCCC--HHHHHHHHH
Confidence 88899999999999963 23368999999999999987554443 466777887664 344 578999999
Q ss_pred HHhhCC
Q 003222 345 RAISLK 350 (838)
Q Consensus 345 ~ll~~~ 350 (838)
++++++
T Consensus 332 ~ll~d~ 337 (370)
T d2iw1a1 332 KALTQS 337 (370)
T ss_dssp HHHHCH
T ss_pred HHHcCH
Confidence 999876
|
| >d1rzua_ c.87.1.8 (A:) Glycogen synthase 1, GlgA {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: UDP-Glycosyltransferase/glycogen phosphorylase superfamily: UDP-Glycosyltransferase/glycogen phosphorylase family: Glycosyl transferases group 1 domain: Glycogen synthase 1, GlgA species: Agrobacterium tumefaciens [TaxId: 358]
Probab=98.43 E-value=3e-07 Score=102.47 Aligned_cols=136 Identities=19% Similarity=0.098 Sum_probs=85.8
Q ss_pred HHHHHHhCCCCCCcEEEEEcCCCCch--hhh-HH---hhCCCCcEEEEeCCCCCC-----------CCCCeEECCCCC--
Q 003222 211 KEVRKELGIEDDVKLLILNFGGQPAG--WKL-KE---EYLPSGWKCLVCGASDSQ-----------LPPNFIKLPKDA-- 271 (838)
Q Consensus 211 ~~~r~~l~~~~~~~~Vlvs~Gs~~~~--~~l-l~---~l~~~~~~~vv~G~~~~~-----------lp~nv~~~~~~~-- 271 (838)
+.++...+++.++..++++.|..... .++ ++ .+...+..+++.|..... ++.++.+.+...
T Consensus 278 ~~~~~~~~~~~~~~~~i~~vgrl~~~KG~~~Ll~a~~~~~~~~~~l~~~G~G~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 357 (477)
T d1rzua_ 278 KAVAEHFRIDDDGSPLFCVISRLTWQKGIDLMAEAVDEIVSLGGRLVVLGAGDVALEGALLAAASRHHGRVGVAIGYNEP 357 (477)
T ss_dssp HHHHHHHTCCCSSSCEEEEESCBSTTTTHHHHHTTHHHHHHTTCEEEEEECBCHHHHHHHHHHHHHTTTTEEEEESCCHH
T ss_pred HHHHHhcccccCCccEEEEEeeeeecCCcHHHHHHHHHHHhhCCeEEEEecCCchHHHHHHHHHhhcCCeEEEEcccChh
Confidence 45566677765555567788877653 222 22 223346677777765421 578887664432
Q ss_pred CHHHHHhhcCEEEecC---Ch-hhHHHHHHcCCcEEEEeCCCCCCh---HHHHHHHHHcCcEEEEecCCCChhhHHHHHH
Q 003222 272 YTPDFMAASDCMLGKI---GY-GTVSEALAYKLPFVFVRRDYFNEE---PFLRNMLEFYQGGVEMIRRDLLTGHWKPYLE 344 (838)
Q Consensus 272 ~~pdlLa~adl~It~g---G~-~Tv~Eal~~GvP~l~iP~~~~~EQ---~~Na~~l~~~G~g~~l~~~~~~~~~l~~~l~ 344 (838)
..+.+++.||+||..+ |+ .+++||+++|+|+|+....+..|. ..+...+...+.|..++..+ ++.+.++|.
T Consensus 358 ~~~~~~~~aD~~v~PS~~E~fglv~lEAma~G~PvVas~~GG~~E~v~d~~~~~~~~~~~~G~l~~~~d--~~~la~ai~ 435 (477)
T d1rzua_ 358 LSHLMQAGCDAIIIPSRFEPCGLTQLYALRYGCIPVVARTGGLADTVIDANHAALASKAATGVQFSPVT--LDGLKQAIR 435 (477)
T ss_dssp HHHHHHHHCSEEEECCSCCSSCSHHHHHHHHTCEEEEESSHHHHHHCCBCCHHHHHTTCCCBEEESSCS--HHHHHHHHH
T ss_pred HHHHHHHhCccccCCccccCCCHHHHHHHHcCCCEEEcCCCCCcceeecCCccccccCCCceEEeCCCC--HHHHHHHHH
Confidence 1236788999999754 22 488999999999999763221111 01222333456788888776 468889998
Q ss_pred HHhh
Q 003222 345 RAIS 348 (838)
Q Consensus 345 ~ll~ 348 (838)
++++
T Consensus 436 ~~l~ 439 (477)
T d1rzua_ 436 RTVR 439 (477)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 8775
|
| >d1ueka1 d.14.1.5 (A:1-148) 4-(cytidine 5'-diphospho)-2C-methyl-D-erythritol kinase IspE {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ribosomal protein S5 domain 2-like superfamily: Ribosomal protein S5 domain 2-like family: GHMP Kinase, N-terminal domain domain: 4-(cytidine 5'-diphospho)-2C-methyl-D-erythritol kinase IspE species: Thermus thermophilus [TaxId: 274]
Probab=97.95 E-value=2.3e-05 Score=72.37 Aligned_cols=77 Identities=17% Similarity=0.246 Sum_probs=58.1
Q ss_pred HHHHHHHHHHHHHhCCCCCCCEEEEEEeCCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhhhcCCCCC
Q 003222 611 AYVAGTILVLMTELGVRFEDSISMLVSSAVPEGKGVSSSASVEVASMSAIAAAHGLNIHPRDLALLCQKVENHIVGAPCG 690 (838)
Q Consensus 611 ~y~~g~i~~~~~~~g~~~~~g~~i~i~s~iP~g~GLgSSAA~~va~~~al~~l~~~~l~~~ela~~a~~~E~~~~G~~~G 690 (838)
|.+.-++..+.+..+.. .++++.+..+||.|+|||+++|=.+++..+++.+++.+.+.. ++|.. . |
T Consensus 58 Nlv~ka~~~l~~~~~~~--~~~~I~i~K~IP~~aGLGGGSsnAAa~l~~l~~~~~~~~~l~---~la~~-----i----G 123 (148)
T d1ueka1 58 NLAYRAASLYLEAAGQP--GGVRILLEKRIPEGAGLGGGSSDAAQVLLALQALYPAEVDLF---ALART-----L----G 123 (148)
T ss_dssp SHHHHHHHHHHHHTTCC--CEEEEEEECCSCSSSSSCHHHHHHHHHHHHHHHHSCSCCCHH---HHHHH-----H----C
T ss_pred chhhhhhhhhHHhcCCC--ceEEEEEEeeEEEeeeccCCchhhhhHHHHHHHhhhhhhHHH---Hhhcc-----c----C
Confidence 55544455555555543 689999999999999999999999999999999999877543 44432 2 3
Q ss_pred hhhHHHhhcCCC
Q 003222 691 VMDQMASACGEA 702 (838)
Q Consensus 691 ~mDq~a~~~G~~ 702 (838)
.|--.++.|+.
T Consensus 124 -sDVPffl~~~~ 134 (148)
T d1ueka1 124 -ADVPFFLLGRG 134 (148)
T ss_dssp -TTHHHHHHCSE
T ss_pred -CCchhhccCCC
Confidence 48777888873
|
| >d1oj4a1 d.14.1.5 (A:1-163) 4-(cytidine 5'-diphospho)-2C-methyl-D-erythritol kinase IspE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ribosomal protein S5 domain 2-like superfamily: Ribosomal protein S5 domain 2-like family: GHMP Kinase, N-terminal domain domain: 4-(cytidine 5'-diphospho)-2C-methyl-D-erythritol kinase IspE species: Escherichia coli [TaxId: 562]
Probab=97.95 E-value=5.2e-05 Score=71.25 Aligned_cols=64 Identities=17% Similarity=0.249 Sum_probs=56.9
Q ss_pred CCCEEEEEEeCCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhhhcCCCCChhhHHHhhcCCC
Q 003222 629 EDSISMLVSSAVPEGKGVSSSASVEVASMSAIAAAHGLNIHPRDLALLCQKVENHIVGAPCGVMDQMASACGEA 702 (838)
Q Consensus 629 ~~g~~i~i~s~iP~g~GLgSSAA~~va~~~al~~l~~~~l~~~ela~~a~~~E~~~~G~~~G~mDq~a~~~G~~ 702 (838)
..+++|.|..+||.|+|||+.+|=++++..+++.+++.+++..++.++|..+ | .|--.++.|+.
T Consensus 87 ~~~~~I~i~KnIP~gaGLGGGSsnAAa~L~~l~~~~~~~l~~~~l~~ia~~i---------G-sDvpffl~~~~ 150 (163)
T d1oj4a1 87 GSGANISIDKRLPMGGGLGGGSSNAATVLVALNHLWQCGLSMDELAEMGLTL---------G-ADVPVFVRGHA 150 (163)
T ss_dssp TCEEEEEEECCSCSSTTSCHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHGGG---------C-TTHHHHHHCBC
T ss_pred CCceEEEEEeeeeecccccCCCchHHHHHHHhhcccccCCCHHHHHHHHHHc---------C-CcccccccCCC
Confidence 3689999999999999999999999999999999999999999998888532 4 58888888874
|
| >d1o6ca_ c.87.1.3 (A:) UDP-N-acetylglucosamine 2-epimerase {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: UDP-Glycosyltransferase/glycogen phosphorylase superfamily: UDP-Glycosyltransferase/glycogen phosphorylase family: UDP-N-acetylglucosamine 2-epimerase domain: UDP-N-acetylglucosamine 2-epimerase species: Bacillus subtilis [TaxId: 1423]
Probab=97.82 E-value=0.00027 Score=75.67 Aligned_cols=103 Identities=15% Similarity=-0.023 Sum_probs=67.6
Q ss_pred CCCCeEECCCCCCHH--HHHhhcCEEEecCChhhHHHHHHcCCcEEEEeCCCCCChHHHHHHHHHcCcEEEEecCCCChh
Q 003222 260 LPPNFIKLPKDAYTP--DFMAASDCMLGKIGYGTVSEALAYKLPFVFVRRDYFNEEPFLRNMLEFYQGGVEMIRRDLLTG 337 (838)
Q Consensus 260 lp~nv~~~~~~~~~p--dlLa~adl~It~gG~~Tv~Eal~~GvP~l~iP~~~~~EQ~~Na~~l~~~G~g~~l~~~~~~~~ 337 (838)
..+|+.+++...+.. .+|..|+++||-+| +.+-||.++|+|+|.+. ...|++. ..+.|.-+.+.. ..+
T Consensus 254 ~~~ni~~~~~l~~~~fl~llk~s~~vIgnSs-s~i~Ea~~lg~P~Inir--~~tERqe----~~~~g~nilv~~---~~~ 323 (377)
T d1o6ca_ 254 DSDRVHLIEPLEVIDFHNFAAKSHFILTDSG-GVQEEAPSLGKPVLVLR--DTTERPE----GVEAGTLKLAGT---DEE 323 (377)
T ss_dssp CCSSEEECCCCCHHHHHHHHHHCSEEEEC---CHHHHGGGGTCCEEEEC--SCCC-------CTTTTSSEEECS---CHH
T ss_pred cccceEeccccchHHHHHHHhhhheeecccc-hhHHhhhhhhceEEEeC--CCCcCcc----hhhcCeeEECCC---CHH
Confidence 367888865444322 67889999999999 56889999999999996 3445432 124565555543 346
Q ss_pred hHHHHHHHHhhCCCCc---------cCCCCHHHHHHHHHHHHhc
Q 003222 338 HWKPYLERAISLKPCY---------EGGINGGEVAAHILQETAI 372 (838)
Q Consensus 338 ~l~~~l~~ll~~~~~~---------~~~~~g~~~~a~~i~~~~~ 372 (838)
.+..+++++++++..+ -..++.++++++.|..++.
T Consensus 324 ~I~~~i~~~l~~~~~~~~~~~~~npYGdG~as~rI~~~L~~~~~ 367 (377)
T d1o6ca_ 324 NIYQLAKQLLTDPDEYKKMSQASNPYGDGEASRRIVEELLFHYG 367 (377)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHCCCTTCCSCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhChHHHhhhccCCCCCCCChHHHHHHHHHHHhhC
Confidence 6777888777643211 1466778999999988754
|
| >d1v4va_ c.87.1.3 (A:) UDP-N-acetylglucosamine 2-epimerase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: UDP-Glycosyltransferase/glycogen phosphorylase superfamily: UDP-Glycosyltransferase/glycogen phosphorylase family: UDP-N-acetylglucosamine 2-epimerase domain: UDP-N-acetylglucosamine 2-epimerase species: Thermus thermophilus [TaxId: 274]
Probab=97.62 E-value=0.00048 Score=73.48 Aligned_cols=102 Identities=20% Similarity=0.059 Sum_probs=70.6
Q ss_pred CCCeEECCCCCCHH--HHHhhcCEEEecCChhhHHHHHHcCCcEEEEeCCCCCChHHHHHHHHHcCcEEEEecCCCChhh
Q 003222 261 PPNFIKLPKDAYTP--DFMAASDCMLGKIGYGTVSEALAYKLPFVFVRRDYFNEEPFLRNMLEFYQGGVEMIRRDLLTGH 338 (838)
Q Consensus 261 p~nv~~~~~~~~~p--dlLa~adl~It~gG~~Tv~Eal~~GvP~l~iP~~~~~EQ~~Na~~l~~~G~g~~l~~~~~~~~~ 338 (838)
.+|+.+++...+.. .+|.+|+++||.+| +.+.||.++|+|+|.+. ...|.+.- + +.|..+.+.. .++.
T Consensus 251 ~~n~~~~~~l~~~~~l~ll~~s~~vignSs-sgi~Ea~~lg~P~Inir--~~~eRqeg---~-~~g~nvlv~~---d~~~ 320 (373)
T d1v4va_ 251 VRNFVLLDPLEYGSMAALMRASLLLVTDSG-GLQEEGAALGVPVVVLR--NVTERPEG---L-KAGILKLAGT---DPEG 320 (373)
T ss_dssp CTTEEEECCCCHHHHHHHHHTEEEEEESCH-HHHHHHHHTTCCEEECS--SSCSCHHH---H-HHTSEEECCS---CHHH
T ss_pred cccceeeccchHHHHHHHhhhceeEecccc-hhhhcchhhcCcEEEeC--CCccCHHH---H-hcCeeEEcCC---CHHH
Confidence 56887765433222 56789999999988 78889999999999986 33343221 2 3465554332 3567
Q ss_pred HHHHHHHHhhCCCCc---------cCCCCHHHHHHHHHHHHhc
Q 003222 339 WKPYLERAISLKPCY---------EGGINGGEVAAHILQETAI 372 (838)
Q Consensus 339 l~~~l~~ll~~~~~~---------~~~~~g~~~~a~~i~~~~~ 372 (838)
+..+++.++.++..+ -..++.++++++.|.+++.
T Consensus 321 I~~~i~~~l~~~~~~~~~~~~~npYGdG~as~rI~~~L~~~~~ 363 (373)
T d1v4va_ 321 VYRVVKGLLENPEELSRMRKAKNPYGDGKAGLMVARGVAWRLG 363 (373)
T ss_dssp HHHHHHHHHTCHHHHHHHHHSCCSSCCSCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCHHHHhhcccCCCCCCCCHHHHHHHHHHHHHhC
Confidence 788888887654221 1578899999999999874
|
| >d1piea2 d.58.26.7 (A:214-396) Galactokinase {Lactococcus lactis [TaxId: 1358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: GHMP Kinase, C-terminal domain family: Galactokinase domain: Galactokinase species: Lactococcus lactis [TaxId: 1358]
Probab=97.54 E-value=7e-06 Score=78.62 Aligned_cols=59 Identities=14% Similarity=0.193 Sum_probs=44.8
Q ss_pred CeEEEEEeCCCCCcCCCCchhhHHHHHhcChHHHhcccCCCCCCCCCCCCCCCCCCcccchhHHHHhhhccccccCCChh
Q 003222 724 HIRFWGIDSGIRHSVGGADYGSVRAGAFMGRKMIKSTASGMLPQSLPSSNGLNNIEPEVDGVELLEAEASLDYLCNLSPH 803 (838)
Q Consensus 724 ~~~~vi~~s~~~~~~~~~~y~~~r~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~ 803 (838)
++.|+|+|||++|++++++||.||. +|+++++.+++...+++|++++.+
T Consensus 1 dy~lvi~dS~v~h~L~~s~Yn~R~~-------------------------------ec~~a~~~v~~~~~~~~L~~v~~~ 49 (183)
T d1piea2 1 DYDIVIMNTNKPRALTESKYNERFA-------------------------------ETREALKRMQTRLDIQSLGELSNE 49 (183)
T ss_dssp TEEEEEEECCCCCCTTCHHHHHHHH-------------------------------HHHHHHHHHHHHCCCSSGGGCCHH
T ss_pred CeEEEEEeCCCCcCcCcchhHHHHH-------------------------------HHHHHHHHHHHhcCcchHhhhcHH
Confidence 4789999999999999999977664 455566666666667778888888
Q ss_pred hHHHHHhccCc
Q 003222 804 RFEALYAKNIP 814 (838)
Q Consensus 804 ~~~~~~~~~~~ 814 (838)
+++. +...+.
T Consensus 50 ~l~~-~~~~l~ 59 (183)
T d1piea2 50 EFDA-NTDLIG 59 (183)
T ss_dssp HHHH-TGGGTC
T ss_pred HHHH-HHhhcC
Confidence 8877 555553
|
| >d2bfwa1 c.87.1.8 (A:218-413) Glycogen synthase 1, GlgA {Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: UDP-Glycosyltransferase/glycogen phosphorylase superfamily: UDP-Glycosyltransferase/glycogen phosphorylase family: Glycosyl transferases group 1 domain: Glycogen synthase 1, GlgA species: Pyrococcus abyssi [TaxId: 29292]
Probab=97.20 E-value=0.0011 Score=63.43 Aligned_cols=129 Identities=13% Similarity=0.131 Sum_probs=83.5
Q ss_pred hHHHHHHhCCCCCCcEEEEEcCCCCc---h-hhhHHh---hCC----CCcEEEEeCCCCCC-----------CCCCeEEC
Q 003222 210 RKEVRKELGIEDDVKLLILNFGGQPA---G-WKLKEE---YLP----SGWKCLVCGASDSQ-----------LPPNFIKL 267 (838)
Q Consensus 210 ~~~~r~~l~~~~~~~~Vlvs~Gs~~~---~-~~ll~~---l~~----~~~~~vv~G~~~~~-----------lp~nv~~~ 267 (838)
...+++.++++ +++ +++..|.... + ..+++. +.. +++.++++|...+. .+..+.+.
T Consensus 20 ~~~~~~~~~l~-~~~-~il~~Grl~~~~Kg~~~li~a~~~l~~~~~~~~~~l~i~G~g~~~~~~~~~~~~~~~~~~~~~~ 97 (196)
T d2bfwa1 20 KKSLLSKFGMD-EGV-TFMFIGRFDRGQKGVDVLLKAIEILSSKKEFQEMRFIIIGKGDPELEGWARSLEEKHGNVKVIT 97 (196)
T ss_dssp HHHHHHHTTCC-SCE-EEEEESCBCSSSSCHHHHHHHHHHHTTSGGGGGEEEEEECCBCHHHHHHHHHHHHHCTTEEEEC
T ss_pred HHHHHHHhCCC-CCC-EEEEEcCCCccccCHHHHHHHHHhhhcccCCCCeEEEEEeecccchhhhhhhhhhccceeEEee
Confidence 34678889984 444 4566776643 2 233332 321 45688888876431 23344455
Q ss_pred CCCC--CHHHHHhhcCEEEe----cCChhhHHHHHHcCCcEEEEeCCCCCChHHHHHHHHHcCcEEEEecCCCChhhHHH
Q 003222 268 PKDA--YTPDFMAASDCMLG----KIGYGTVSEALAYKLPFVFVRRDYFNEEPFLRNMLEFYQGGVEMIRRDLLTGHWKP 341 (838)
Q Consensus 268 ~~~~--~~pdlLa~adl~It----~gG~~Tv~Eal~~GvP~l~iP~~~~~EQ~~Na~~l~~~G~g~~l~~~~~~~~~l~~ 341 (838)
++.+ .++.+|..||++|. .+-.+++.||+++|+|+|+... ....+.+ ..+.|..++..+ .+.|..
T Consensus 98 ~~~~~~~l~~~~~~~di~v~ps~~e~~~~~~~Eam~~G~pvI~~~~------~~~~e~i-~~~~g~~~~~~~--~~~l~~ 168 (196)
T d2bfwa1 98 EMLSREFVRELYGSVDFVIIPSYFEPFGLVALEAMCLGAIPIASAV------GGLRDII-TNETGILVKAGD--PGELAN 168 (196)
T ss_dssp SCCCHHHHHHHHTTCSEEEECCSCCSSCHHHHHHHHTTCEEEEESC------HHHHHHC-CTTTCEEECTTC--HHHHHH
T ss_pred eccccccchhccccccccccccccccccccchhhhhcCceeeecCC------Cccceee-cCCceeeECCCC--HHHHHH
Confidence 5543 45688999999994 3334689999999999999652 2233433 456788887665 468888
Q ss_pred HHHHHhhC
Q 003222 342 YLERAISL 349 (838)
Q Consensus 342 ~l~~ll~~ 349 (838)
+|.+++..
T Consensus 169 ~i~~~l~~ 176 (196)
T d2bfwa1 169 AILKALEL 176 (196)
T ss_dssp HHHHHHHC
T ss_pred HHHHHHhC
Confidence 99998864
|
| >d1fi4a1 d.14.1.5 (A:3-190) Mevalonate 5-diphosphate decarboxylase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ribosomal protein S5 domain 2-like superfamily: Ribosomal protein S5 domain 2-like family: GHMP Kinase, N-terminal domain domain: Mevalonate 5-diphosphate decarboxylase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.13 E-value=0.00043 Score=65.95 Aligned_cols=62 Identities=26% Similarity=0.353 Sum_probs=55.8
Q ss_pred CEEEEEEeCCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhhhcCCCCChhhHHHhhcCCC
Q 003222 631 SISMLVSSAVPEGKGVSSSASVEVASMSAIAAAHGLNIHPRDLALLCQKVENHIVGAPCGVMDQMASACGEA 702 (838)
Q Consensus 631 g~~i~i~s~iP~g~GLgSSAA~~va~~~al~~l~~~~l~~~ela~~a~~~E~~~~G~~~G~mDq~a~~~G~~ 702 (838)
.++|.-..++|.++||+||||.-+|++.|+.++++++++.+++..+|..+- |..|- +++||.
T Consensus 101 ~~~I~S~N~FP~aaGLASSAsg~aAl~~al~~~~~~~~~~~~~S~lARlGS----GSAcR------Si~Gg~ 162 (188)
T d1fi4a1 101 KLHIVSENNFPTAAGLASSAAGFAALVSAIAKLYQLPQSTSEISRIARKGS----GSACR------SLFGGY 162 (188)
T ss_dssp CEEEEEEECCCTTSCCCHHHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHH----GGGGG------GGSSSE
T ss_pred eEEEEecCCCcchhhHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhhc----cchhh------hhcCCe
Confidence 578888899999999999999999999999999999999999999998654 67775 899994
|
| >d1f6da_ c.87.1.3 (A:) UDP-N-acetylglucosamine 2-epimerase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: UDP-Glycosyltransferase/glycogen phosphorylase superfamily: UDP-Glycosyltransferase/glycogen phosphorylase family: UDP-N-acetylglucosamine 2-epimerase domain: UDP-N-acetylglucosamine 2-epimerase species: Escherichia coli [TaxId: 562]
Probab=97.12 E-value=0.0027 Score=67.47 Aligned_cols=99 Identities=18% Similarity=0.113 Sum_probs=67.0
Q ss_pred CCCeEECCCCCCHH--HHHhhcCEEEecCChhhHHHHHHcCCcEEEEeCCCCCChHHHHHHHHHcCcEEEEecCCCChhh
Q 003222 261 PPNFIKLPKDAYTP--DFMAASDCMLGKIGYGTVSEALAYKLPFVFVRRDYFNEEPFLRNMLEFYQGGVEMIRRDLLTGH 338 (838)
Q Consensus 261 p~nv~~~~~~~~~p--dlLa~adl~It~gG~~Tv~Eal~~GvP~l~iP~~~~~EQ~~Na~~l~~~G~g~~l~~~~~~~~~ 338 (838)
.+|+.+++-..+.. .+|.+|+++||-+| +.+-||.++|+|+|.+. ...||+. .+ +.|.-+.+.. ..+.
T Consensus 262 ~~ni~~~~~l~~~~fl~ll~~a~~vignSs-sgi~Ea~~lg~P~Inir--~~ter~~---~~-~~g~~i~v~~---~~~~ 331 (376)
T d1f6da_ 262 VKNVILIDPQEYLPFVWLMNHAWLILTDSG-GIQEEAPSLGKPVLVMR--DTTERPE---AV-TAGTVRLVGT---DKQR 331 (376)
T ss_dssp CTTEEEECCCCHHHHHHHHHHCSEEEESSS-GGGGTGGGGTCCEEECS--SCCSCHH---HH-HHTSEEECCS---SHHH
T ss_pred cccceeeccccHHHHHHHHhhceEEEecCc-chHhhHHHhCCCEEEcC--CCccCcc---ce-ecCeeEECCC---CHHH
Confidence 57888765444332 67889999999999 67889999999999875 4567754 22 3455554432 3567
Q ss_pred HHHHHHHHhhCCCCc---------cCCCCHHHHHHHHHHH
Q 003222 339 WKPYLERAISLKPCY---------EGGINGGEVAAHILQE 369 (838)
Q Consensus 339 l~~~l~~ll~~~~~~---------~~~~~g~~~~a~~i~~ 369 (838)
+..++.++++++... -...+.++++++.|.+
T Consensus 332 I~~ai~~~l~~~~~~~~~~~~~npYGdG~as~rI~~iLk~ 371 (376)
T d1f6da_ 332 IVEEVTRLLKDENEYQAMSRAHNPYGDGQACSRILEALKN 371 (376)
T ss_dssp HHHHHHHHHHCHHHHHHHHHSCCTTCCSCHHHHHHHHHHH
T ss_pred HHHHHHHHHhChHhhhhhccCCCCCCCChHHHHHHHHHHh
Confidence 778888877543210 1456677777777765
|
| >d2f9fa1 c.87.1.8 (A:2-167) First mannosyl transferase WbaZ {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: UDP-Glycosyltransferase/glycogen phosphorylase superfamily: UDP-Glycosyltransferase/glycogen phosphorylase family: Glycosyl transferases group 1 domain: First mannosyl transferase WbaZ species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=97.04 E-value=0.0017 Score=60.41 Aligned_cols=82 Identities=16% Similarity=0.032 Sum_probs=61.1
Q ss_pred CCCeEECCCCCC--HHHHHhhcCEEEecC----ChhhHHHHHHcCCcEEEEeCCCCCChHHHHHHHHHcCcEEEEecCCC
Q 003222 261 PPNFIKLPKDAY--TPDFMAASDCMLGKI----GYGTVSEALAYKLPFVFVRRDYFNEEPFLRNMLEFYQGGVEMIRRDL 334 (838)
Q Consensus 261 p~nv~~~~~~~~--~pdlLa~adl~It~g----G~~Tv~Eal~~GvP~l~iP~~~~~EQ~~Na~~l~~~G~g~~l~~~~~ 334 (838)
++||+++++++. ++++|..||++|... ...+++||+++|+|+|+.+.. .+.+.+.....|...+. +
T Consensus 66 ~~~v~~~g~~~~~~~~~~~~~ad~~i~ps~~e~~~~~~~Ea~~~g~pvi~s~~~------~~~e~i~~~~~g~~~~~-d- 137 (166)
T d2f9fa1 66 PDNVKFLGSVSEEELIDLYSRCKGLLCTAKDEDFGLTPIEAMASGKPVIAVNEG------GFKETVINEKTGYLVNA-D- 137 (166)
T ss_dssp CTTEEEEESCCHHHHHHHHHHCSEEEECCSSCCSCHHHHHHHHTTCCEEEESSH------HHHHHCCBTTTEEEECS-C-
T ss_pred cCcEEEeecccccccccccccccccccccccccccccccccccccccceeecCC------cceeeecCCcccccCCC-C-
Confidence 578888877643 668999999999743 235899999999999998632 34455666667765543 3
Q ss_pred ChhhHHHHHHHHhhCCC
Q 003222 335 LTGHWKPYLERAISLKP 351 (838)
Q Consensus 335 ~~~~l~~~l~~ll~~~~ 351 (838)
++.+.++|.++++++.
T Consensus 138 -~~~~~~~i~~l~~~~~ 153 (166)
T d2f9fa1 138 -VNEIIDAMKKVSKNPD 153 (166)
T ss_dssp -HHHHHHHHHHHHHCTT
T ss_pred -HHHHHHHHHHHHhCHH
Confidence 5789999999998763
|
| >d1wuua2 d.58.26.7 (A:217-392) Galactokinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: GHMP Kinase, C-terminal domain family: Galactokinase domain: Galactokinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.30 E-value=0.00014 Score=69.00 Aligned_cols=33 Identities=18% Similarity=0.260 Sum_probs=25.5
Q ss_pred eEEEEEeCCCCCcCCCCchhhHHHHHhcChHHH
Q 003222 725 IRFWGIDSGIRHSVGGADYGSVRAGAFMGRKMI 757 (838)
Q Consensus 725 ~~~vi~~s~~~~~~~~~~y~~~r~~~~~g~~~l 757 (838)
+.+||+|||++|++++++||+|+.+|....+.|
T Consensus 2 l~lvl~ds~v~r~l~~~~Yn~R~~ec~~aa~~l 34 (176)
T d1wuua2 2 LAVLITNSNVRHSLASSEYPVRRRQCEEVARAL 34 (176)
T ss_dssp EEEEEEEEEEEC--CTTTHHHHHHHHHHHHHHT
T ss_pred eEEEEEcCCCCcCcCccchHHHHHHHHHHHHHh
Confidence 678999999999999999999997665555444
|
| >d1s4ea2 d.58.26.7 (A:181-351) Galactokinase {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: GHMP Kinase, C-terminal domain family: Galactokinase domain: Galactokinase species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=95.96 E-value=0.00015 Score=68.44 Aligned_cols=34 Identities=9% Similarity=0.253 Sum_probs=27.7
Q ss_pred CeEEEEEeCCCCCcCCCCchhhHHHHHhcChHHH
Q 003222 724 HIRFWGIDSGIRHSVGGADYGSVRAGAFMGRKMI 757 (838)
Q Consensus 724 ~~~~vi~~s~~~~~~~~~~y~~~r~~~~~g~~~l 757 (838)
++.|||+|||++|++++++||.||.+|.-+.+.|
T Consensus 1 d~~~vv~dsg~~h~L~~s~Yn~R~~ec~~a~~~l 34 (171)
T d1s4ea2 1 DVSVLVFYTGVKRELASSEYAERKRIAEESLRIL 34 (171)
T ss_dssp TEEEEEEEEEEECTTHHHHHHHHHHHHHHHHHHH
T ss_pred CeEEEEEeCCCCcCCCcchHHHHHHHHHHHHHHH
Confidence 4689999999999999999999997665444444
|
| >d1pswa_ c.87.1.7 (A:) ADP-heptose LPS heptosyltransferase II {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: UDP-Glycosyltransferase/glycogen phosphorylase superfamily: UDP-Glycosyltransferase/glycogen phosphorylase family: ADP-heptose LPS heptosyltransferase II domain: ADP-heptose LPS heptosyltransferase II species: Escherichia coli [TaxId: 562]
Probab=95.88 E-value=0.069 Score=54.78 Aligned_cols=252 Identities=12% Similarity=0.073 Sum_probs=123.9
Q ss_pred EEEEEeecCCCcccHHHHHHHHHHHHHC--CCeEEEEeCCCC-cccccccCCCcee-eeeeccCCCcccccccccChHHH
Q 003222 16 LVFAYYVTGHGFGHATRVVEVVRNLISA--GHDVHVVTGAPD-FVFTSEIQSPRLF-IRKVLLDCGAVQADALTVDRLAS 91 (838)
Q Consensus 16 ~~Il~~v~g~G~GHv~r~laLA~~L~~~--Gh~V~~v~~~~~-~~~~~~i~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~ 91 (838)
|+||++-+ .+.|-+..+.++.++|+++ +.+|++++.... .++.. .+.+. +.. .+....
T Consensus 1 MkILii~~-~~iGD~il~~p~i~~Lk~~~P~~~I~~l~~~~~~~l~~~---~p~id~v~~--------------~~~~~~ 62 (348)
T d1pswa_ 1 MKILVIGP-SWVGDMMMSQSLYRTLQARYPQAIIDVMAPAWCRPLLSR---MPEVNEAIP--------------MPLGHG 62 (348)
T ss_dssp CEEEEECC-SSHHHHHHHHHHHHHHHHHSTTCEEEEEECGGGHHHHTT---CTTEEEEEE--------------C-----
T ss_pred CeEEEEcC-CChHHHHHHHHHHHHHHHHCCCCEEEEEEChhHHHHHhh---CCCcCEEEE--------------ecCccc
Confidence 57777665 4799999999999999997 678999886421 11111 12211 111 000000
Q ss_pred HHHHHHHhhccHHHHHHHHHHHHhcCCCcEEEECC-CchHHHHHHHhCCcEEEEecCchh--HHHHhhhhhcccchHHHH
Q 003222 92 LEKYSETAVAPRKSILKDEVEWLNSIKADLVVSDV-VPVACRAAADAGIRSVCVTNFSWD--FIYAEYVMAAGHHHRSIV 168 (838)
Q Consensus 92 l~~~~~~~~~~~~~~l~~~~~~L~~~kPDlVVsD~-~~~~~~aA~~lgIP~V~is~~~~~--~i~~~~~~~~~~~~~~i~ 168 (838)
...+. ...+....+++.++|+++.-. .....+++...+++........+. .......... .......
T Consensus 63 ~~~~~---------~~~~l~~~l~~~~~D~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 132 (348)
T d1pswa_ 63 ALEIG---------ERRKLGHSLREKRYDRAYVLPNSFKSALVPLFAGIPHRTGWRGEMRYGLLNDVRVLDK-EAWPLMV 132 (348)
T ss_dssp --CHH---------HHHHHHHHTTTTTCSEEEECSCCSGGGHHHHHTTCSEEEEECTTTCTTTCTEEECCCT-TTCCSHH
T ss_pred cchhh---------hhhhHHHHhhhcccceEeecccccchhhHHHhhccccccccccccccccccccccccc-ccchhHH
Confidence 00011 112234557788999999654 444556677788887543211110 0000000000 0000011
Q ss_pred HHHHhhccccceEEecCCCCCCCCCCceeecCccccc---CCcChHHHHHHhCCCCCCcEEEEEcCCCCch---h-----
Q 003222 169 WQIAEDYSHCEFLIRLPGYCPMPAFRDVIDVPLVVRR---LHKSRKEVRKELGIEDDVKLLILNFGGQPAG---W----- 237 (838)
Q Consensus 169 ~~l~~~y~~~d~ll~~~~~~~~p~~~~v~~ip~~~~~---~~~~~~~~r~~l~~~~~~~~Vlvs~Gs~~~~---~----- 237 (838)
++......... ... . ..-...+..... .....+...+.++...+++.|++..|+.... +
T Consensus 133 ~~~~~~~~~~~-~~~--~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~k~wp~~~~ 202 (348)
T d1pswa_ 133 ERYIALAYDKG-IMR--T-------AQDLPQPLLWPQLQVSEGEKSYTCNQFSLSSERPMIGFCPGAEFGPAKRWPHYHY 202 (348)
T ss_dssp HHHHHTTSCGG-GCS--S-------GGGSCSSCCCCCCCCCHHHHHHHHHHTTCCSSSCEEEEECCCTTCGGGSCCHHHH
T ss_pred HHHHHHHHhhh-ccc--c-------ccccccccccccccCCHHHHHHHHHHhccccCCCeEEeccccchhhccccchHHH
Confidence 11111100000 000 0 000000000001 1112234556777777888888888765431 2
Q ss_pred -hhHHhhCCCCcEEEEeCCCCCC---------C----CCCeEECCCCCCHH---HHHhhcCEEEecCChhhHHHHHHcCC
Q 003222 238 -KLKEEYLPSGWKCLVCGASDSQ---------L----PPNFIKLPKDAYTP---DFMAASDCMLGKIGYGTVSEALAYKL 300 (838)
Q Consensus 238 -~ll~~l~~~~~~~vv~G~~~~~---------l----p~nv~~~~~~~~~p---dlLa~adl~It~gG~~Tv~Eal~~Gv 300 (838)
++.+.+...+..++++|...+. + ..++.-+.-...+. .++..||++||.=+ +.+.=|.++|+
T Consensus 203 ~~L~~~l~~~~~~ivl~g~~~e~~~~~~~~~~~~~~~~~~~~~l~g~~sl~el~~li~~a~l~I~~Dt-g~~HlAaa~g~ 281 (348)
T d1pswa_ 203 AELAKQLIDEGYQVVLFGSAKDHEAGNEILAALNTEQQAWCRNLAGETQLDQAVILIAACKAIVTNDS-GLMHVAAALNR 281 (348)
T ss_dssp HHHHHHHHHTTCEEEECCCGGGHHHHHHHHTTSCHHHHTTEEECTTTSCHHHHHHHHHTSSEEEEESS-HHHHHHHHTTC
T ss_pred hhhHHHHhhcCCccccccccchHHHHHHHHHhhhcccccccccccCCccHHHHHHHHhcceeEeecCc-cHHHHHHHcCC
Confidence 2333444455677777653321 1 12333221112344 57778999999665 78899999999
Q ss_pred cEEEEe
Q 003222 301 PFVFVR 306 (838)
Q Consensus 301 P~l~iP 306 (838)
|+|++=
T Consensus 282 p~i~lf 287 (348)
T d1pswa_ 282 PLVALY 287 (348)
T ss_dssp CEEEEE
T ss_pred CEEEEE
Confidence 999994
|
| >d1uqta_ c.87.1.6 (A:) Trehalose-6-phosphate synthase, OtsA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: UDP-Glycosyltransferase/glycogen phosphorylase superfamily: UDP-Glycosyltransferase/glycogen phosphorylase family: Trehalose-6-phosphate synthase, OtsA domain: Trehalose-6-phosphate synthase, OtsA species: Escherichia coli [TaxId: 562]
Probab=82.36 E-value=0.81 Score=48.80 Aligned_cols=67 Identities=19% Similarity=0.161 Sum_probs=49.4
Q ss_pred HHHHHhhcCEEEec---CChh-hHHHHHHcCCc-----EEEEeCCCCCChHHHHHHHHHcCcEEEEecCCCChhhHHHHH
Q 003222 273 TPDFMAASDCMLGK---IGYG-TVSEALAYKLP-----FVFVRRDYFNEEPFLRNMLEFYQGGVEMIRRDLLTGHWKPYL 343 (838)
Q Consensus 273 ~pdlLa~adl~It~---gG~~-Tv~Eal~~GvP-----~l~iP~~~~~EQ~~Na~~l~~~G~g~~l~~~~~~~~~l~~~l 343 (838)
++.+++.||+++.. =|+| +..|++++|+| +|+-...+..|+ .+-|+.+++.| .+.+.++|
T Consensus 344 l~a~~~~Adv~v~~s~~EG~~lv~~Ea~a~~~p~~~g~lIlS~~~G~~~~---------l~~g~lVnP~d--~~~~A~ai 412 (456)
T d1uqta_ 344 LMKIFRYSDVGLVTPLRDGMNLVAKEYVAAQDPANPGVLVLSQFAGAANE---------LTSALIVNPYD--RDEVAAAL 412 (456)
T ss_dssp HHHHHHHCSEEEECCSSBSCCHHHHHHHHHSCTTSCCEEEEETTBGGGGT---------CTTSEEECTTC--HHHHHHHH
T ss_pred HhHHHhhhceeecCCccCCCCcHHHHHHHhCCCCCCCcEEEeCCCCCHHH---------hCCeEEECcCC--HHHHHHHH
Confidence 34778899999963 3555 78899999999 555544444444 23478888877 47899999
Q ss_pred HHHhhCC
Q 003222 344 ERAISLK 350 (838)
Q Consensus 344 ~~ll~~~ 350 (838)
.++|+++
T Consensus 413 ~~aL~~~ 419 (456)
T d1uqta_ 413 DRALTMS 419 (456)
T ss_dssp HHHHTCC
T ss_pred HHHHcCC
Confidence 9999865
|