Citrus Sinensis ID: 003236
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 837 | 2.2.26 [Sep-21-2011] | |||||||
| Q9FUY2 | 931 | Transcriptional corepress | yes | no | 0.844 | 0.759 | 0.583 | 0.0 | |
| Q8YRI1 | 1526 | Uncharacterized WD repeat | yes | no | 0.335 | 0.184 | 0.340 | 7e-33 | |
| Q00808 | 1356 | Vegetative incompatibilit | yes | no | 0.365 | 0.225 | 0.303 | 1e-30 | |
| Q8YTC2 | 1258 | Uncharacterized WD repeat | no | no | 0.320 | 0.213 | 0.302 | 6e-25 | |
| P0CS42 | 433 | Nuclear distribution prot | yes | no | 0.322 | 0.623 | 0.269 | 1e-23 | |
| P0CS43 | 433 | Nuclear distribution prot | N/A | no | 0.322 | 0.623 | 0.269 | 1e-23 | |
| C4Q0P6 | 417 | Lissencephaly-1 homolog O | N/A | no | 0.320 | 0.642 | 0.281 | 8e-23 | |
| P49695 | 742 | Probable serine/threonine | no | no | 0.323 | 0.365 | 0.303 | 8e-22 | |
| O22212 | 554 | U4/U6 small nuclear ribon | no | no | 0.322 | 0.487 | 0.284 | 3e-21 | |
| C3XVT5 | 406 | Lissencephaly-1 homolog O | yes | no | 0.284 | 0.586 | 0.265 | 7e-21 |
| >sp|Q9FUY2|LEUNG_ARATH Transcriptional corepressor LEUNIG OS=Arabidopsis thaliana GN=LUG PE=1 SV=2 | Back alignment and function desciption |
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Score = 842 bits (2175), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 439/753 (58%), Positives = 559/753 (74%), Gaps = 46/753 (6%)
Query: 125 RRDSTQHLNDTGDDL-----------RPGFAKAFTTKMYEDRLKKLPFQRDSLDDATIKP 173
RRD + N + + L PG + +K YE+R+K +P QR+SLD+A +K
Sbjct: 185 RRDGSHLANGSANGLVGNNSEPVMRQNPGSGSSLASKAYEERVK-MPTQRESLDEAAMK- 242
Query: 174 RLSDNMTQLLDPNHATLLKAAAIGSQPSGQTLHGTHG-VSQQVQSRSQQPPLSTQEVKTE 232
R DN+ QLLDP+HA++LK+AA QP+GQ LH T G +S QVQ+R+QQ P S ++K+E
Sbjct: 243 RFGDNVGQLLDPSHASILKSAAASGQPAGQVLHSTSGGMSPQVQTRNQQLPGSAVDIKSE 302
Query: 233 MNPTMNPRAAGSEGSLIGVHGSNQGAGNVTLKGWPLTGLDQFRSGLLQQQKSL--TQPYN 290
+NP + PR A EGSLIG+ GSNQG+ N+TLKGWPLTG DQ RSGLLQQQK +Q ++
Sbjct: 303 INPVLTPRTAVPEGSLIGIPGSNQGSNNLTLKGWPLTGFDQLRSGLLQQQKPFMQSQSFH 362
Query: 291 QLQL------QQLMLQAQQNLASPSANDLESRKLRMLHNSRNMGLARDGSSNSVGDLVST 344
QL + QQLML AQQNL S S ++ E+R+L+ML N+R+M L +DG +SVGD++
Sbjct: 363 QLNMLTPQHQQQLML-AQQNLNSQSVSE-ENRRLKMLLNNRSMTLGKDGLGSSVGDVLPN 420
Query: 345 VGSAMQIISPGLPRGDNDLLIKIQQQQQQLQHYSHH-------------------PLSSQ 385
VGS++Q LPRGD D+L+K++ Q Q + L++
Sbjct: 421 VGSSLQPGGSLLPRGDTDMLLKLKMALLQQQQQNQQQGGGNPPQPQPQPQPLNQLALTNP 480
Query: 386 QSQNSNPLLQQQDKILAGGSMTMDGSMSNTFQGNDQASKNQIGRKRKQAVSSSGPANSSG 445
Q Q+SN + QQ+K+ GGS+TMDGS+SN+F+GN+Q KNQ GRKRKQ VSSSGPANSSG
Sbjct: 481 QPQSSNHSIHQQEKLGGGGSITMDGSISNSFRGNEQVLKNQSGRKRKQPVSSSGPANSSG 540
Query: 446 TANTPGPTPSSPSSPST-HTPGDVISRPTLQHNGASSKSLLMFGSDGMGSLTSAPNQLTD 504
TANT GP+PSS S + HTPGDVIS P L H+G SSKS++MFG++G G+LTS NQL D
Sbjct: 541 TANTAGPSPSSAPSTPSTHTPGDVISMPNLPHSGGSSKSMMMFGTEGTGTLTSPSNQLAD 600
Query: 505 MDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFS 564
MDRFV+DGSLDDNVESFLS +D D RD V R +V KGFTFTE + AST+KV CHFS
Sbjct: 601 MDRFVEDGSLDDNVESFLSQEDGDQRDAVTRCMDVSKGFTFTEVNSVRASTTKVTCCHFS 660
Query: 565 PDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVW 624
DGK+LA+ GHDKKAVLW T++ K+TLEEHT ITD+RFSPS RLATSS D+TVRVW
Sbjct: 661 SDGKMLASAGHDKKAVLWYTDTMKPKTTLEEHTAMITDIRFSPSQLRLATSSFDKTVRVW 720
Query: 625 DTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSG 684
D +N YSLRTF GHS+ V SLDFHP K+DL+CSCDN++EIRYWSINNGSC V+K G
Sbjct: 721 DADNKGYSLRTFMGHSSMVTSLDFHPIKDDLICSCDNDNEIRYWSINNGSCTRVYK--GG 778
Query: 685 ATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVSD 744
+TQ+RFQPR+G+ LAA+ N +++LDVETQ R LQGH N ++SVCW+ SG++LASVS+
Sbjct: 779 STQIRFQPRVGKYLAASSANLVNVLDVETQAIRHSLQGHANPINSVCWDPSGDFLASVSE 838
Query: 745 ELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLT 804
++V+VW++G+GS+GEC+HELSC GNKF SCVFHP +PSLLVIGCY++LELWNM+ENKT+T
Sbjct: 839 DMVKVWTLGTGSEGECVHELSCNGNKFQSCVFHPAYPSLLVIGCYQSLELWNMSENKTMT 898
Query: 805 LSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 837
L AH+ L++SLA ST G+VASASHDK VK+WK
Sbjct: 899 LPAHEGLITSLAVSTATGLVASASHDKLVKLWK 931
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Transcription repressor subunit of the SEU-LUG transcriptional corepressor of the C class floral homeotic gene AGAMOUS during the early stages of floral meristem development. Is part of the A class cadastral complex that define the boundaries between the A and C class homeotic genes expression and function. Interacts together with APETALA2 and SEUSS to repress AGAMOUS expression. Also plays a role in ovule and pollen development. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q8YRI1|YY46_NOSS1 Uncharacterized WD repeat-containing protein alr3466 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=alr3466 PE=4 SV=1 | Back alignment and function description |
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Score = 143 bits (360), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 99/291 (34%), Positives = 151/291 (51%), Gaps = 10/291 (3%)
Query: 550 LIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSL 609
++ TS V S F+PDG LA+G D+ LW S T + HT W+ V F+P
Sbjct: 1195 ILQGHTSWVNSVVFNPDGSTLASGSSDQTVRLWEINSSKCLCTFQGHTSWVNSVVFNPDG 1254
Query: 610 SRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWS 669
S LA+ S+D+TVR+WD + L TF GH+ V S+ F+P +L S + +R W
Sbjct: 1255 SMLASGSSDKTVRLWDISSSK-CLHTFQGHTNWVNSVAFNPDGS-MLASGSGDQTVRLWE 1312
Query: 670 INNGSCAGVFKCQ-SGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVH 728
I++ C F+ S + + F P + + + + + + + + C GH N V
Sbjct: 1313 ISSSKCLHTFQGHTSWVSSVTFSPDGTMLASGSDDQTVRLWSISSGECLYTFLGHTNWVG 1372
Query: 729 SVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIG 787
SV ++ G LAS S D+ VR+WSI S G+C++ L N S VF P +LL G
Sbjct: 1373 SVIFSPDGAILASGSGDQTVRLWSI---SSGKCLYTLQGHNNWVGSIVFSPD-GTLLASG 1428
Query: 788 CYE-TLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIW 836
+ T+ LWN++ + L TL H V S+A S+ ++AS S D+ +K+W
Sbjct: 1429 SDDQTVRLWNISSGECLYTLHGHINSVRSVAFSSDGLILASGSDDETIKLW 1479
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Nostoc sp. (strain PCC 7120 / UTEX 2576) (taxid: 103690) |
| >sp|Q00808|HETE1_PODAS Vegetative incompatibility protein HET-E-1 OS=Podospora anserina GN=HET-E1 PE=4 SV=1 | Back alignment and function description |
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Score = 135 bits (340), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 98/323 (30%), Positives = 155/323 (47%), Gaps = 17/323 (5%)
Query: 522 LSPDDADPRDRVG-----RSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHD 576
SPD R+RV ++ ++ + T Q + +V+S FSPDG+ +A+G D
Sbjct: 891 FSPD----RERVASGSDDKTIKIWDAASGTCTQTLEGHGGRVQSVAFSPDGQRVASGSDD 946
Query: 577 KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTF 636
+W S T TLE H + V FSP R+A+ S D+T+++WDT + + +T
Sbjct: 947 HTIKIWDAASGTCTQTLEGHGSSVLSVAFSPDGQRVASGSGDKTIKIWDTASGTCT-QTL 1005
Query: 637 TGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQ-MRFQPRLG 695
GH +V S+ F P + + D+ + I+ W +G+C + G Q + F P
Sbjct: 1006 EGHGGSVWSVAFSPDGQRVASGSDDKT-IKIWDTASGTCTQTLEGHGGWVQSVVFSPDGQ 1064
Query: 696 RILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGS 754
R+ + + ++ I I D + C L+GH + V SV ++ G+ +AS S D +++W S
Sbjct: 1065 RVASGSDDHTIKIWDAVSGTCTQTLEGHGDSVWSVAFSPDGQRVASGSIDGTIKIWDAAS 1124
Query: 755 GSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENK-TLTLSAHDKLVS 813
G+ C L G HS F P + T+++W+ T TL H V
Sbjct: 1125 GT---CTQTLEGHGGWVHSVAFSPDGQRVASGSIDGTIKIWDAASGTCTQTLEGHGGWVQ 1181
Query: 814 SLAASTVNGMVASASHDKCVKIW 836
S+A S VAS S DK +KIW
Sbjct: 1182 SVAFSPDGQRVASGSSDKTIKIW 1204
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Responsible for vegetative incompatibility through specific interactions with different alleles of the unlinked gene, het-c. Podospora anserina (taxid: 5145) |
| >sp|Q8YTC2|Y2800_NOSS1 Uncharacterized WD repeat-containing protein alr2800 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=alr2800 PE=4 SV=1 | Back alignment and function description |
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Score = 117 bits (292), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 84/278 (30%), Positives = 143/278 (51%), Gaps = 10/278 (3%)
Query: 563 FSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVR 622
FSPD ++LA+G +DK LW ++ S+LE HT +I + FSP LA++S D +VR
Sbjct: 944 FSPDRQILASGSNDKTVKLWDWQTGKYISSLEGHTDFIYGIAFSPDSQTLASASTDSSVR 1003
Query: 623 VWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ 682
+W+ + H+ V ++ FHP + ++ + + ++ W+I+ G C
Sbjct: 1004 LWNISTGQ-CFQILLEHTDWVYAVVFHPQGK-IIATGSADCTVKLWNISTGQCLKTLSEH 1061
Query: 683 SGAT-QMRFQPRLGRILA-AAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLA 740
S M + P G++LA A+ + + + D T C L+GH N+V+S ++ +GE +A
Sbjct: 1062 SDKILGMAWSPD-GQLLASASADQSVRLWDCCTGRCVGILRGHSNRVYSAIFSPNGEIIA 1120
Query: 741 SVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTE 799
+ S D+ V++W +G+C+ L+ N F P L +T+ +W++
Sbjct: 1121 TCSTDQTVKIW---DWQQGKCLKTLTGHTNWVFDIAFSPDGKILASASHDQTVRIWDVNT 1177
Query: 800 NKTLTLS-AHDKLVSSLAASTVNGMVASASHDKCVKIW 836
K + H LVSS+A S +VAS S D+ V+IW
Sbjct: 1178 GKCHHICIGHTHLVSSVAFSPDGEVVASGSQDQTVRIW 1215
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Nostoc sp. (strain PCC 7120 / UTEX 2576) (taxid: 103690) |
| >sp|P0CS42|LIS1_CRYNJ Nuclear distribution protein PAC1 OS=Cryptococcus neoformans var. neoformans serotype D (strain JEC21 / ATCC MYA-565) GN=PAC1 PE=3 SV=1 | Back alignment and function description |
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Score = 112 bits (280), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 87/323 (26%), Positives = 146/323 (45%), Gaps = 53/323 (16%)
Query: 563 FSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVR 622
F P LLA+ D LW E+ ++ TL+ HT+ + DV F P +AT S+D T++
Sbjct: 113 FHPTWTLLASASEDATVKLWDWEAGDMERTLKGHTKAVMDVDFDPRGGLMATCSSDLTLK 172
Query: 623 VWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ 682
+WDT N +++T GH +V S+ F P E L+ S + IR W +++G C F
Sbjct: 173 LWDTANQYTNVKTLHGHDHSVSSVRFMPDGETLV-SASRDKTIRVWQVSSGYCIKTFSGH 231
Query: 683 SGATQMRFQPRLGRILAAAIENYIS-ILDVETQVCRLKLQGHKNQVHSVCW--------- 732
+ + GR L +A + S I D T +++L+GH++ V +
Sbjct: 232 AEWVREAVPSEDGRWLVSASNDQTSRIWDFSTGETKMELRGHEHVVECAVFAPVNAYPAI 291
Query: 733 ----------------NTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCV 775
+ G Y A+ S D+ +++W S G+C+ L N + V
Sbjct: 292 RELAGLKPPAPRDTRAKSPGVYAATGSRDKTIKLWDALS---GQCLRTLVGHDNWIRALV 348
Query: 776 FHPTFPSLLVIGCYETLELWNMTENK-TLTLSAHDKLVSSL----------AASTVNG-- 822
FHP+ LL +T+++W++ + T T+ AH V+S+ VNG
Sbjct: 349 FHPSGKYLLSASDDKTIKVWDLANGRCTKTIEAHSHFVTSMTWGRAVGASGGIEKVNGDA 408
Query: 823 ---------MVASASHDKCVKIW 836
++A+ S D+ +K+W
Sbjct: 409 SSKEPRRINVLATGSVDQTIKVW 431
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Positively regulates the activity of the minus-end directed microtubule motor protein dynein. Plays a central role in positioning the mitotic spindle at the bud neck during cell division. Targets cytoplasmic dynein to microtubule plus ends, thereby promoting dynein-mediated microtubule sliding along the bud cortex and consequently the movement of the mitotic spindle to the bud neck. Cryptococcus neoformans var. neoformans serotype D (strain JEC21 / ATCC MYA-565) (taxid: 214684) |
| >sp|P0CS43|LIS1_CRYNB Nuclear distribution protein PAC1 OS=Cryptococcus neoformans var. neoformans serotype D (strain B-3501A) GN=PAC1 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 112 bits (280), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 87/323 (26%), Positives = 146/323 (45%), Gaps = 53/323 (16%)
Query: 563 FSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVR 622
F P LLA+ D LW E+ ++ TL+ HT+ + DV F P +AT S+D T++
Sbjct: 113 FHPTWTLLASASEDATVKLWDWEAGDMERTLKGHTKAVMDVDFDPRGGLMATCSSDLTLK 172
Query: 623 VWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ 682
+WDT N +++T GH +V S+ F P E L+ S + IR W +++G C F
Sbjct: 173 LWDTANQYTNVKTLHGHDHSVSSVRFMPDGETLV-SASRDKTIRVWQVSSGYCIKTFSGH 231
Query: 683 SGATQMRFQPRLGRILAAAIENYIS-ILDVETQVCRLKLQGHKNQVHSVCW--------- 732
+ + GR L +A + S I D T +++L+GH++ V +
Sbjct: 232 AEWVREAVPSEDGRWLVSASNDQTSRIWDFSTGETKMELRGHEHVVECAVFAPVNAYPAI 291
Query: 733 ----------------NTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCV 775
+ G Y A+ S D+ +++W S G+C+ L N + V
Sbjct: 292 RELAGLKPPAPRDTRAKSPGVYAATGSRDKTIKLWDALS---GQCLRTLVGHDNWIRALV 348
Query: 776 FHPTFPSLLVIGCYETLELWNMTENK-TLTLSAHDKLVSSL----------AASTVNG-- 822
FHP+ LL +T+++W++ + T T+ AH V+S+ VNG
Sbjct: 349 FHPSGKYLLSASDDKTIKVWDLANGRCTKTIEAHSHFVTSMTWGRAVGASGGIEKVNGDA 408
Query: 823 ---------MVASASHDKCVKIW 836
++A+ S D+ +K+W
Sbjct: 409 SSKEPRRINVLATGSVDQTIKVW 431
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Positively regulates the activity of the minus-end directed microtubule motor protein dynein. Plays a central role in positioning the mitotic spindle at the bud neck during cell division. Targets cytoplasmic dynein to microtubule plus ends, thereby promoting dynein-mediated microtubule sliding along the bud cortex and consequently the movement of the mitotic spindle to the bud neck. Cryptococcus neoformans var. neoformans serotype D (strain B-3501A) (taxid: 283643) |
| >sp|C4Q0P6|LIS1_SCHMA Lissencephaly-1 homolog OS=Schistosoma mansoni GN=Smp_129340 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 109 bits (273), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 82/291 (28%), Positives = 133/291 (45%), Gaps = 23/291 (7%)
Query: 563 FSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVR 622
F P + + D +W E+ + TL+ HT + DV F PS LA+ SAD V+
Sbjct: 130 FHPHYNVFVSASEDASIKVWDYETGEFEHTLKGHTDSVQDVAFDPSGKFLASCSADMQVK 189
Query: 623 VWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ 682
+WD ++T TGH V S+ F PS D L S + I+ W ++ G C F
Sbjct: 190 LWDFTIYQ-CIKTLTGHDHNVSSVAFLPSG-DFLVSASRDKTIKMWEVSTGYCTKTFIGH 247
Query: 683 SGATQ-MRFQPRLGRILAAAIENY-ISILDVETQVCRLKLQGHKNQVHSVCW-------- 732
+ + +R P G +LA+ ++ I I VE++ C++ L+GH++ V + W
Sbjct: 248 TEWIRSVRPSPE-GNLLASCSNDHTIRIWSVESRECQVVLRGHEHVVECIAWASHPQNLN 306
Query: 733 ------NTSGEYLASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVI 786
N+S ++ D +R W + G C+ L N VFHP LL
Sbjct: 307 SLPSSMNSSLLLVSGSRDRTIRFWDVNIGI---CLFVLIGHDNWVRQLVFHPHGRLLLSA 363
Query: 787 GCYETLELWNMTENKT-LTLSAHDKLVSSLAASTVNGMVASASHDKCVKIW 836
+T+ +W++ + TL+AH V+SL + + + S D+ + IW
Sbjct: 364 SDDKTIRVWDLKNRRCHKTLNAHSHFVTSLDVNRLAPYAITGSVDQTIHIW 414
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Positively regulates the activity of the minus-end directed microtubule motor protein dynein. May enhance dynein-mediated microtubule sliding by targeting dynein to the microtubule plus end. Required for several dynein- and microtubule-dependent processes. Schistosoma mansoni (taxid: 6183) |
| >sp|P49695|PKWA_THECU Probable serine/threonine-protein kinase PkwA OS=Thermomonospora curvata GN=pkwA PE=3 SV=1 | Back alignment and function description |
|---|
Score = 106 bits (264), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 85/280 (30%), Positives = 128/280 (45%), Gaps = 9/280 (3%)
Query: 560 SCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADR 619
+ FSP G LLA G DK +W S TLE HT W+ V FSP + LA+ S D
Sbjct: 464 AVAFSPGGSLLAGGSGDKLIHVWDVASGDELHTLEGHTDWVRAVAFSPDGALLASGSDDA 523
Query: 620 TVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVF 679
TVR+WD + F GH+ V+ + F P ++ S + R W++ G+ V
Sbjct: 524 TVRLWDVAAAE-ERAVFEGHTHYVLDIAFSPDGS-MVASGSRDGTARLWNVATGTEHAVL 581
Query: 680 KCQSG-ATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEY 738
K + + F P + + + + I + DV T R LQ V S+ ++ G
Sbjct: 582 KGHTDYVYAVAFSPDGSMVASGSRDGTIRLWDVATGKERDVLQAPAENVVSLAFSPDGSM 641
Query: 739 LASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYE-TLELWNM 797
L SD V +W + S GE +H + + F P +LL G + T+ LW++
Sbjct: 642 LVHGSDSTVHLWDVAS---GEALHTFEGHTDWVRAVAFSPDG-ALLASGSDDRTIRLWDV 697
Query: 798 -TENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIW 836
+ + TL H + V S+A +ASAS D ++IW
Sbjct: 698 AAQEEHTTLEGHTEPVHSVAFHPEGTTLASASEDGTIRIW 737
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May play a regulatory role during the complex growth cycle and in secondary metabolite production. Thermomonospora curvata (taxid: 2020) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: 1 EC: . EC: 1 |
| >sp|O22212|PRP4L_ARATH U4/U6 small nuclear ribonucleoprotein PRP4-like protein OS=Arabidopsis thaliana GN=EMB2776 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 104 bits (259), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 80/281 (28%), Positives = 134/281 (47%), Gaps = 11/281 (3%)
Query: 561 CHFSPDGKLLATGGHDKKAVLWCTESFT-VKSTLEEHTQWITDVRFSPSLSRLATSSADR 619
C FS DGK+LAT LW T + L++H + TDV FSP LAT+SADR
Sbjct: 261 CSFSRDGKILATCSLSGVTKLWEMPQVTNTIAVLKDHKERATDVVFSPVDDCLATASADR 320
Query: 620 TVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVF 679
T ++W T+ L+TF GH + + FHPS + L + + R W IN G+ +
Sbjct: 321 TAKLWKTDGT--LLQTFEGHLDRLARVAFHPSGK-YLGTTSYDKTWRLWDINTGAELLLQ 377
Query: 680 KCQSGATQ-MRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEY 738
+ S + + FQ + +++ + D+ T L QGH V SV ++ +G +
Sbjct: 378 EGHSRSVYGIAFQQDGALAASCGLDSLARVWDLRTGRSILVFQGHIKPVFSVNFSPNGYH 437
Query: 739 LAS-VSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYET-LELWN 796
LAS D R+W + + ++ + N + P L Y+ + +W+
Sbjct: 438 LASGGEDNQCRIWDL---RMRKSLYIIPAHANLVSQVKYEPQEGYFLATASYDMKVNIWS 494
Query: 797 MTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIW 836
+ + +L+ H+ V+SL + + +A+ SHD+ +K+W
Sbjct: 495 GRDFSLVKSLAGHESKVASLDITADSSCIATVSHDRTIKLW 535
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|C3XVT5|LIS1_BRAFL Lissencephaly-1 homolog OS=Branchiostoma floridae GN=BRAFLDRAFT_59218 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 103 bits (256), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 71/267 (26%), Positives = 123/267 (46%), Gaps = 29/267 (10%)
Query: 551 IPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLS 610
+ T V+ F GKLLA+ D LW ++F T+ H ++ V F P+
Sbjct: 144 LKGHTDAVQDVSFDQQGKLLASCSADMTIKLWDFQTFENIKTMHGHDHNVSSVHFMPNGD 203
Query: 611 RLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSI 670
L ++S D+T+++W+ Y ++TFTGH V ++ + LL SC N+ +R W +
Sbjct: 204 FLISASRDKTIKMWELAT-GYCVKTFTGHREWVRTVRVNQDG-SLLASCSNDQTVRVWVV 261
Query: 671 NNGSCAGVFK---------------CQSGATQMRFQPRLGR----ILAAAIENYISILDV 711
N C + C +++ + GR +L+ + + I + D+
Sbjct: 262 ANKECKAELREHEHVVECIAWAPESCNGHVSEVMGAEKKGRSGPFLLSGSRDKTIKMWDI 321
Query: 712 ETQVCRLKLQGHKNQVHSVCWNTSGEYLASVSDE-LVRVWSIGSGSKGECI--HELSCTG 768
T VC + L GH N V V W+ G+Y+ S SD+ +RVW + + + H+ CT
Sbjct: 322 STGVCIMTLVGHDNWVRGVVWHPGGKYIISASDDKTIRVWDYKNKRCQKTLEAHQHFCT- 380
Query: 769 NKFHSCVFHPTFPSLLVIGCYETLELW 795
S FH + P ++ +T+++W
Sbjct: 381 ----SIDFHRSAPYVITGSVDQTVKVW 403
|
Positively regulates the activity of the minus-end directed microtubule motor protein dynein. May enhance dynein-mediated microtubule sliding by targeting dynein to the microtubule plus end. Required for several dynein- and microtubule-dependent processes. Branchiostoma floridae (taxid: 7739) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 837 | ||||||
| 280967728 | 905 | LisH-SSDP-WD40 [Malus x domestica] | 0.980 | 0.907 | 0.705 | 0.0 | |
| 297738887 | 871 | unnamed protein product [Vitis vinifera] | 0.991 | 0.952 | 0.695 | 0.0 | |
| 225445366 | 878 | PREDICTED: transcriptional corepressor L | 0.991 | 0.945 | 0.690 | 0.0 | |
| 359484630 | 883 | PREDICTED: transcriptional corepressor L | 0.988 | 0.936 | 0.684 | 0.0 | |
| 356515484 | 892 | PREDICTED: transcriptional corepressor L | 0.994 | 0.932 | 0.647 | 0.0 | |
| 449441952 | 891 | PREDICTED: transcriptional corepressor L | 0.990 | 0.930 | 0.636 | 0.0 | |
| 357466351 | 941 | NAD(P)H-quinone oxidoreductase subunit [ | 0.989 | 0.879 | 0.603 | 0.0 | |
| 449441950 | 900 | PREDICTED: transcriptional corepressor L | 0.990 | 0.921 | 0.629 | 0.0 | |
| 449522548 | 900 | PREDICTED: transcriptional corepressor L | 0.990 | 0.921 | 0.629 | 0.0 | |
| 225430178 | 910 | PREDICTED: transcriptional corepressor L | 0.992 | 0.913 | 0.632 | 0.0 |
| >gi|280967728|gb|ACZ98534.1| LisH-SSDP-WD40 [Malus x domestica] | Back alignment and taxonomy information |
|---|
Score = 1108 bits (2867), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 608/862 (70%), Positives = 696/862 (80%), Gaps = 41/862 (4%)
Query: 9 DKMLDVYIYDYLLKRKLHASAKAFQTEGKVSTDPVAIDAPGGFLFEWWSVFWDIFIARTN 68
D LDVYIYDYL+KRKLHASAKAFQ EGKVSTDPVAIDAPGGFLFEWWSVFWDIFIARTN
Sbjct: 4 DHRLDVYIYDYLMKRKLHASAKAFQDEGKVSTDPVAIDAPGGFLFEWWSVFWDIFIARTN 63
Query: 69 EKHSESAASYIESQVIKAREQQQQQQQQHQKPQQHQQMQVQQLLLQRHAQQQQQQQRR-- 126
EKHSE+AASYIE+QVIKAREQQQQQ+ Q Q Q QQ+ +Q+ Q+ Q+QQQQQ++
Sbjct: 64 EKHSEAAASYIETQVIKAREQQQQQKPQLQDQMQMQQLLLQRHAQQQQQQRQQQQQQQQP 123
Query: 127 -----------DSTQHLNDTGDD--LR--PGFAKAFTTKMYEDRLKKLPFQRDSLDDATI 171
D TQ N T +D LR P A + TKMYE+RLK LP QRD++DDA I
Sbjct: 124 QQQQQQQQQRRDGTQLHNGTANDSLLRQNPATANSMATKMYEERLK-LPPQRDAMDDAAI 182
Query: 172 KPRLSDNMTQLLDPNHATLLKAAAIGSQPSGQTLHGTHGVS----QQVQSRSQQPPLSTQ 227
K RL DNM+QLLDPNH +++KAA G QP GQ LHGT G QQ SRSQQ P S+Q
Sbjct: 183 KQRLGDNMSQLLDPNHVSMMKAATAGGQPPGQMLHGTPGGVLGNLQQPHSRSQQLPGSSQ 242
Query: 228 EVKTEMNPTMNPRAAGSEGSLIGVHGSNQGAGNVTLKGWPLTGLDQFRSGLLQQQKSLTQ 287
++K+E+ MNPRA EGSLIG HGSNQG N+TLKGWPLTG D+ RSG+LQQQ SL Q
Sbjct: 243 DIKSEV---MNPRAVAPEGSLIGTHGSNQGNNNLTLKGWPLTGFDRLRSGILQQQNSLMQ 299
Query: 288 ---PYNQLQLQQLMLQAQQNLASPSANDLESRKLRMLHNSRNMGLARDGSSNSVGDLVST 344
PYNQL QQ ++ AQQNLASPS+NDL++R+++ML N+RNM L +DG +SV V
Sbjct: 300 SPQPYNQLLQQQQLMLAQQNLASPSSNDLDNRRMKMLLNNRNMVLGKDGQLSSVD--VPN 357
Query: 345 VGSAMQIISPGLPRGDNDLLIK---------IQQQQQQLQHYSHHPLSSQQSQNSNPLLQ 395
VGS Q+ P LPRGD D+L+K +Q QQ Q YS HPLS Q SQNS+ LQ
Sbjct: 358 VGSPAQVGCPVLPRGDADMLMKPTYQLQQQQMQSNNQQQQPYSQHPLSGQHSQNSSQHLQ 417
Query: 396 QQDKILAGGSMTMDGSMSNTFQGNDQASKNQIGRKRKQAVSSSGPANSSGTANTPGPTPS 455
Q +KI+ GSM DGSM NT QGNDQASKNQ+GRKRKQ VSSSGPANSSGT NT GP+PS
Sbjct: 418 QHEKIMGSGSMAPDGSMPNTLQGNDQASKNQLGRKRKQPVSSSGPANSSGTVNTTGPSPS 477
Query: 456 SPSSPSTHTPGDVISRPTLQHNGASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLD 515
SPS+PSTHT GDV+S PTL HNG SSKSLLMFGSDG+GS SAPN+LTD+DRFVDDGSL+
Sbjct: 478 SPSTPSTHTAGDVMSMPTLPHNGGSSKSLLMFGSDGLGSRASAPNKLTDVDRFVDDGSLE 537
Query: 516 DNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGH 575
DNVESFLS DDADPR RV R ++V KGF+F E QLIPAST+KVE CH S DGK LATGGH
Sbjct: 538 DNVESFLSHDDADPRGRVVRCSDVSKGFSFKEVQLIPASTNKVECCHLSSDGKSLATGGH 597
Query: 576 DKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRT 635
D+KAVLWCTE+++VKSTL+EH+QWITDVRFSPS+SRLATSSAD+TVRVWD +NP YSLRT
Sbjct: 598 DRKAVLWCTETYSVKSTLDEHSQWITDVRFSPSMSRLATSSADKTVRVWDADNPGYSLRT 657
Query: 636 FTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLG 695
FTGHS+TVMS+DFHPSKED LCSCDNNSEIRYWSI NGSCAGVFK GA+Q+RFQP G
Sbjct: 658 FTGHSSTVMSVDFHPSKEDFLCSCDNNSEIRYWSIKNGSCAGVFK--GGASQVRFQPCFG 715
Query: 696 RILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSG 755
R LAAA +N++SILDVETQVCRLKLQGHK+ VHSVCW+ SG+YLASVSD+LVRVW+IGS
Sbjct: 716 RNLAAAADNFVSILDVETQVCRLKLQGHKSAVHSVCWDPSGDYLASVSDDLVRVWTIGSS 775
Query: 756 SKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSAHDKLVSSL 815
KGE IHELSC+GNKF++CVFHPT+P+LLVIGCYETLELWNMTENKT+TL AHDKLVSSL
Sbjct: 776 CKGEFIHELSCSGNKFNTCVFHPTYPALLVIGCYETLELWNMTENKTMTLHAHDKLVSSL 835
Query: 816 AASTVNGMVASASHDKCVKIWK 837
A S+ G+VASASHDKCVK+WK
Sbjct: 836 AVSSATGLVASASHDKCVKLWK 857
|
Source: Malus x domestica Species: Malus x domestica Genus: Malus Family: Rosaceae Order: Rosales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297738887|emb|CBI28132.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1088 bits (2814), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 611/878 (69%), Positives = 688/878 (78%), Gaps = 48/878 (5%)
Query: 1 MSQNNWEADKMLDVYIYDYLLKRKLHASAKAFQTEGKVSTDPVAIDAPGGFLFEWWSVFW 60
MSQ NWEADKMLDVYI+DY LKRKLHASAKAFQ E KVST+PVAIDAPGGFLFEWWSVFW
Sbjct: 1 MSQTNWEADKMLDVYIHDYFLKRKLHASAKAFQAEAKVSTEPVAIDAPGGFLFEWWSVFW 60
Query: 61 DIFIARTNEKHSESAASYIESQVIKAREQQQQQQQQHQKPQQHQQMQVQQLLLQRHAQQQ 120
DIFIARTNEKHSE+AASYIE+Q+IKARE QQQQQQQ Q+ QQ QQ Q Q Q+ QQ
Sbjct: 61 DIFIARTNEKHSEAAASYIETQLIKARELQQQQQQQQQQQQQQQQHQKPQQQQQQQQQQM 120
Query: 121 QQQQRR----------------DSTQHLNDTGDDL---------RPGFAKAFTTKMYEDR 155
Q QQ D TQ LN +G+ L P A TKMYE+R
Sbjct: 121 QMQQLLLQRHVQQQQQQQQQRRDGTQILNGSGNGLVSNDALMRQNPATANTLATKMYEER 180
Query: 156 LKKLPFQRDSLDDATIKPRLSDNMTQLLDPNHATLLKAAAIGSQPSGQTLHGT-HGVS-- 212
LK LP QRD LDDA +K R DNM QLL+PNHA+LLK+AA+ QP GQTLHG G+S
Sbjct: 181 LK-LPLQRDPLDDAAMKQRFGDNMGQLLEPNHASLLKSAAVSGQP-GQTLHGAPGGISGN 238
Query: 213 -QQVQSRSQQPPLSTQEVKTEMNPTMNPRAAGSEGSLIGVHGSNQGAGNVTLKGWPLTGL 271
QQVQSR+QQ +S+ ++K+EMNP MNPRAAG EGSLIGVHGSNQG N+TLKGWPLTGL
Sbjct: 239 LQQVQSRNQQLQVSS-DIKSEMNPMMNPRAAGPEGSLIGVHGSNQGGNNLTLKGWPLTGL 297
Query: 272 DQFRSGLLQQQKSLTQP----YNQLQLQQLMLQAQQNLASPSANDLESRKLRMLHNSRNM 327
DQ RSG+LQQ KSL QP + QQL+LQAQQNLASPSA+DLE RKLRML NSRN
Sbjct: 298 DQLRSGILQQHKSLIQPSQPFHQLQLQQQLLLQAQQNLASPSASDLECRKLRMLLNSRN- 356
Query: 328 GLARDGSSNSVGDLVSTVGSAMQIISPGLPRGDNDLLIKIQQQQQQLQHYSH-----HPL 382
L +DG N+VGD+V+ VGS MQ+ P LPRGD D+LIK+QQQQ Q + HPL
Sbjct: 357 SLGKDGQLNTVGDVVANVGSPMQVGCPVLPRGDTDMLIKLQQQQLQNSNQQQQQYLQHPL 416
Query: 383 SSQQSQNSNP-LLQQQDKILAGGSMTMDGSMSNTFQGNDQASKNQIGRKRKQAVSSSGPA 441
SSQQSQ+SN LL QQDK++ GS+ +DGSMSNTF+GNDQ SK QIGRKRKQ VSSSGPA
Sbjct: 417 SSQQSQSSNHHLLHQQDKMIGSGSIGLDGSMSNTFRGNDQTSKGQIGRKRKQPVSSSGPA 476
Query: 442 NSSGTANTPGPTPSSPSSPST-HTPGDVISRPTLQHNGASSKSLLMFGSDGMGSLTSAPN 500
NSSGT NT GP+PSS S + HTPGDVIS PTL HNG SSKSLLM+GSDGMG+ TSAPN
Sbjct: 477 NSSGTGNTAGPSPSSAPSTPSTHTPGDVISMPTLSHNGGSSKSLLMYGSDGMGTHTSAPN 536
Query: 501 QLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVES 560
QL D+DRFVDDGSLDDNVESFL+ DD DPRD VGRS + KGF+F+E + I ASTSKVE
Sbjct: 537 QLADVDRFVDDGSLDDNVESFLAHDDGDPRDTVGRSVDGSKGFSFSEVRCITASTSKVEC 596
Query: 561 CHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRT 620
CHFS DGKLLATGG DKKAVLWCTESFT KS LEEH+Q ITD+RFSPS+ RLATSSAD+T
Sbjct: 597 CHFSSDGKLLATGGQDKKAVLWCTESFTAKSRLEEHSQMITDIRFSPSMPRLATSSADKT 656
Query: 621 VRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK 680
VRVWD +NP YSLRTFTGHST V SLDFHP+K+DL+CSCD N EIRYWSI NGSC VFK
Sbjct: 657 VRVWDVDNPVYSLRTFTGHSTNVTSLDFHPNKDDLICSCDGNGEIRYWSIPNGSCTRVFK 716
Query: 681 CQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLA 740
G MRFQPR GR LAAA E +SILDVETQ CR KLQGHKN V SVCW++SG YLA
Sbjct: 717 --GGTNHMRFQPRHGRYLAAAAEGVVSILDVETQACRQKLQGHKNHV-SVCWDSSGSYLA 773
Query: 741 SVSDELVRVWSIGSGSK-GECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTE 799
+VS++LV+VW++GSG K ECIHEL +GNKF+SC FHPT+ SLLVIGCY++LELWNMTE
Sbjct: 774 TVSEDLVKVWTVGSGGKAAECIHELHYSGNKFNSCAFHPTYTSLLVIGCYQSLELWNMTE 833
Query: 800 NKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 837
NKT+TL AHDKL+SSLA S V G+VASASHD CVK+WK
Sbjct: 834 NKTMTLPAHDKLISSLAVSNVTGLVASASHDNCVKLWK 871
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225445366|ref|XP_002284908.1| PREDICTED: transcriptional corepressor LEUNIG-like isoform 2 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1084 bits (2804), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 611/885 (69%), Positives = 687/885 (77%), Gaps = 55/885 (6%)
Query: 1 MSQNNWEADKMLDVYIYDYLLKRKLHASAKAFQTEGKVSTDPVAIDAPGGFLFEWWSVFW 60
MSQ NWEADKMLDVYI+DY LKRKLHASAKAFQ E KVST+PVAIDAPGGFLFEWWSVFW
Sbjct: 1 MSQTNWEADKMLDVYIHDYFLKRKLHASAKAFQAEAKVSTEPVAIDAPGGFLFEWWSVFW 60
Query: 61 DIFIARTNEKHSESAASYIESQVIKAREQQQQQQQQHQKPQQHQQMQVQQLLLQRHAQQQ 120
DIFIARTNEKHSE+AASYIE+Q+IKARE QQQQQQQ Q+ QQ QQ Q Q Q+ QQ
Sbjct: 61 DIFIARTNEKHSEAAASYIETQLIKARELQQQQQQQQQQQQQQQQHQKPQQQQQQQQQQM 120
Query: 121 QQQQRR----------------DSTQHLNDTGDDL---------RPGFAKAFTTKMYEDR 155
Q QQ D TQ LN +G+ L P A TKMYE+R
Sbjct: 121 QMQQLLLQRHVQQQQQQQQQRRDGTQILNGSGNGLVSNDALMRQNPATANTLATKMYEER 180
Query: 156 LKKLPFQRDSLDDATIKPRLSDNMTQLLDPNHATLLKAAAIGSQPSGQTLHGT-HGVS-- 212
LK LP QRD LDDA +K R DNM QLL+PNHA+LLK+AA+ QP GQTLHG G+S
Sbjct: 181 LK-LPLQRDPLDDAAMK-RFGDNMGQLLEPNHASLLKSAAVSGQP-GQTLHGAPGGISGN 237
Query: 213 -QQVQSRSQQPPLSTQ-EVKTEMNPTMNPRAAGSEGSLIGVHGSNQGAGNVTLKGWPLTG 270
QQVQSR+QQ +S+ ++K+EMNP MNPRAAG EGSLIGVHGSNQG N+TLKGWPLTG
Sbjct: 238 LQQVQSRNQQLQVSSACDIKSEMNPMMNPRAAGPEGSLIGVHGSNQGGNNLTLKGWPLTG 297
Query: 271 LDQFRSGLLQQQKSLTQP----YNQLQLQQLMLQAQQNLASPSANDLESRKLRMLHNSRN 326
LDQ RSG+LQQ KSL QP + QQL+LQAQQNLASPSA+DLE RKLRML NSRN
Sbjct: 298 LDQLRSGILQQHKSLIQPSQPFHQLQLQQQLLLQAQQNLASPSASDLECRKLRMLLNSRN 357
Query: 327 MGLARDGSSNSVGDLVSTVGSAMQIISPGLPRGDNDLLIK-----------IQQQQQQLQ 375
L +DG N+VGD+V+ VGS MQ+ P LPRGD D+LIK +Q QQ Q
Sbjct: 358 -SLGKDGQLNTVGDVVANVGSPMQVGCPVLPRGDTDMLIKRLNVSQLQQQQLQNSNQQQQ 416
Query: 376 HYSHHPLSSQQSQNSNP-LLQQQDKILAGGSMTMDGSMSNTFQGNDQASKNQIGRKRKQA 434
Y HPLSSQQSQ+SN LL QQDK++ GS+ +DGSMSNTF+GNDQ SK QIGRKRKQ
Sbjct: 417 QYLQHPLSSQQSQSSNHHLLHQQDKMIGSGSIGLDGSMSNTFRGNDQTSKGQIGRKRKQP 476
Query: 435 VSSSGPANSSGTANTPGPTPSSPSSPST-HTPGDVISRPTLQHNGASSKSLLMFGSDGMG 493
VSSSGPANSSGT NT GP+PSS S + HTPGDVIS PTL HNG SSKSLLM+GSDGMG
Sbjct: 477 VSSSGPANSSGTGNTAGPSPSSAPSTPSTHTPGDVISMPTLSHNGGSSKSLLMYGSDGMG 536
Query: 494 SLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPA 553
+ TSAPNQL D+DRFVDDGSLDDNVESFL+ DD DPRD VGRS + KGF+F+E + I A
Sbjct: 537 THTSAPNQLADVDRFVDDGSLDDNVESFLAHDDGDPRDTVGRSVDGSKGFSFSEVRCITA 596
Query: 554 STSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLA 613
STSKVE CHFS DGKLLATGG DKKAVLWCTESFT KS LEEH+Q ITD+RFSPS+ RLA
Sbjct: 597 STSKVECCHFSSDGKLLATGGQDKKAVLWCTESFTAKSRLEEHSQMITDIRFSPSMPRLA 656
Query: 614 TSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNG 673
TSSAD+TVRVWD +NP YSLRTFTGHST V SLDFHP+K+DL+CSCD N EIRYWSI NG
Sbjct: 657 TSSADKTVRVWDVDNPVYSLRTFTGHSTNVTSLDFHPNKDDLICSCDGNGEIRYWSIPNG 716
Query: 674 SCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWN 733
SC VFK G MRFQPR GR LAAA E +SILDVETQ CR KLQGHKN V SVCW+
Sbjct: 717 SCTRVFK--GGTNHMRFQPRHGRYLAAAAEGVVSILDVETQACRQKLQGHKNHV-SVCWD 773
Query: 734 TSGEYLASVSDELVRVWSIGSGSK-GECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETL 792
+SG YLA+VS++LV+VW++GSG K ECIHEL +GNKF+SC FHPT+ SLLVIGCY++L
Sbjct: 774 SSGSYLATVSEDLVKVWTVGSGGKAAECIHELHYSGNKFNSCAFHPTYTSLLVIGCYQSL 833
Query: 793 ELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 837
ELWNMTENKT+TL AHDKL+SSLA S V G+VASASHD CVK+WK
Sbjct: 834 ELWNMTENKTMTLPAHDKLISSLAVSNVTGLVASASHDNCVKLWK 878
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359484630|ref|XP_003633134.1| PREDICTED: transcriptional corepressor LEUNIG-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1080 bits (2792), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 611/893 (68%), Positives = 685/893 (76%), Gaps = 66/893 (7%)
Query: 1 MSQNNWEADKMLDVYIYDYLLKRKLHASAKAFQTEGKVSTDPVAIDAPGGFLFEWWSVFW 60
MSQ NWEADKMLDVYI+DY LKRKLHASAKAFQ E KVST+PVAIDAPGGFLFEWWSVFW
Sbjct: 1 MSQTNWEADKMLDVYIHDYFLKRKLHASAKAFQAEAKVSTEPVAIDAPGGFLFEWWSVFW 60
Query: 61 DIFIARTNEKHSESAASYIESQVIKAREQQQQQQQQHQKPQQHQQMQVQQLLLQRHAQQQ 120
DIFIARTNEKHSE+AASYIE+Q+IKARE QQQQQQQ Q+ QQ QQ Q Q Q+ QQ
Sbjct: 61 DIFIARTNEKHSEAAASYIETQLIKARELQQQQQQQQQQQQQQQQHQKPQQQQQQQQQQM 120
Query: 121 QQQQRR----------------DSTQHLNDTGDDL---------RPGFAKAFTTKMYEDR 155
Q QQ D TQ LN +G+ L P A TKMYE+R
Sbjct: 121 QMQQLLLQRHVQQQQQQQQQRRDGTQILNGSGNGLVSNDALMRQNPATANTLATKMYEER 180
Query: 156 LKKLPFQRDSLDDATIKPRLSDNMTQLLDPNHATLLKAAAIGSQPSGQTLHGT-HGVS-- 212
LK LP QRD LDDA +K R DNM QLL+PNHA+LLK+AA+ QP GQTLHG G+S
Sbjct: 181 LK-LPLQRDPLDDAAMKQRFGDNMGQLLEPNHASLLKSAAVSGQP-GQTLHGAPGGISGN 238
Query: 213 -QQVQSRSQQPPLSTQEVKTEMNPTMNPRAAGSEGSLIGVHGSNQGAGNVTLKGWPLTGL 271
QQVQSR+QQ Q++K+EMNP MNPRAAG EGSLIGVHGSNQG N+TLKGWPLTGL
Sbjct: 239 LQQVQSRNQQ----LQDIKSEMNPMMNPRAAGPEGSLIGVHGSNQGGNNLTLKGWPLTGL 294
Query: 272 DQFRSGLLQQQKSLTQP----YNQLQLQQLMLQAQQNLASPSANDLESRKLRMLHNSRNM 327
DQ RSG+LQQ KSL QP + QQL+LQAQQNLASPSA+DLE RKLRML NSRN
Sbjct: 295 DQLRSGILQQHKSLIQPSQPFHQLQLQQQLLLQAQQNLASPSASDLECRKLRMLLNSRN- 353
Query: 328 GLARDGSSNSVGDLVSTVGSAMQIISPGLPRGDNDLLIK-----------IQQQQQQLQH 376
L +DG N+VGD+V+ VGS MQ+ P LPRGD D+LIK +Q QQ Q
Sbjct: 354 SLGKDGQLNTVGDVVANVGSPMQVGCPVLPRGDTDMLIKRLNVSQLQQQQLQNSNQQQQQ 413
Query: 377 YSHHPLSSQQSQNSNP-LLQQQDKILAGGSMTMDGSMSNTFQGNDQASKNQIGRKRKQAV 435
Y HPLSSQQSQ+SN LL QQDK++ GS+ +DGSMSNTF+GNDQ SK QIGRKRKQ V
Sbjct: 414 YLQHPLSSQQSQSSNHHLLHQQDKMIGSGSIGLDGSMSNTFRGNDQTSKGQIGRKRKQPV 473
Query: 436 SSSGPANSSGTANTPGPTPSSPSSPST-HTPGDVISRPTLQHNGASSKSLLMFGSDGMGS 494
SSSGPANSSGT NT GP+PSS S + HTPGDVIS PTL HNG SSKSLLM+GSDGMG+
Sbjct: 474 SSSGPANSSGTGNTAGPSPSSAPSTPSTHTPGDVISMPTLSHNGGSSKSLLMYGSDGMGT 533
Query: 495 LTSAPNQL---------TDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTF 545
TSAPNQL D+DRFVDDGSLDDNVESFL+ DD DPRD VGRS + KGF+F
Sbjct: 534 HTSAPNQLWNNRYNNLQADVDRFVDDGSLDDNVESFLAHDDGDPRDTVGRSVDGSKGFSF 593
Query: 546 TEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRF 605
+E + I ASTSKVE CHFS DGKLLATGG DKKAVLWCTESFT KS LEEH+Q ITD+RF
Sbjct: 594 SEVRCITASTSKVECCHFSSDGKLLATGGQDKKAVLWCTESFTAKSRLEEHSQMITDIRF 653
Query: 606 SPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEI 665
SPS+ RLATSSAD+TVRVWD +NP YSLRTFTGHST V SLDFHP+K+DL+CSCD N EI
Sbjct: 654 SPSMPRLATSSADKTVRVWDVDNPVYSLRTFTGHSTNVTSLDFHPNKDDLICSCDGNGEI 713
Query: 666 RYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKN 725
RYWSI NGSC VFK G MRFQPR GR LAAA E +SILDVETQ CR KLQGHKN
Sbjct: 714 RYWSIPNGSCTRVFK--GGTNHMRFQPRHGRYLAAAAEGVVSILDVETQACRQKLQGHKN 771
Query: 726 QVHSVCWNTSGEYLASVSDELVRVWSIGSGSK-GECIHELSCTGNKFHSCVFHPTFPSLL 784
V SVCW++SG YLA+VS++LV+VW++GSG K ECIHEL +GNKF+SC FHPT+ SLL
Sbjct: 772 HV-SVCWDSSGSYLATVSEDLVKVWTVGSGGKAAECIHELHYSGNKFNSCAFHPTYTSLL 830
Query: 785 VIGCYETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 837
VIGCY++LELWNMTENKT+TL AHDKL+SSLA S V G+VASASHD CVK+WK
Sbjct: 831 VIGCYQSLELWNMTENKTMTLPAHDKLISSLAVSNVTGLVASASHDNCVKLWK 883
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356515484|ref|XP_003526430.1| PREDICTED: transcriptional corepressor LEUNIG-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1061 bits (2745), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 581/897 (64%), Positives = 676/897 (75%), Gaps = 65/897 (7%)
Query: 1 MSQNNWEADKMLDVYIYDYLLKRKLHASAKAFQTEGKVSTDPVAIDAPGGFLFEWWSVFW 60
MSQ NWEADKMLDVYI+DYL+KR L ASA+AFQ EGKVS+DPVAIDAPGGFLFEWWSVFW
Sbjct: 1 MSQTNWEADKMLDVYIHDYLVKRDLKASAQAFQAEGKVSSDPVAIDAPGGFLFEWWSVFW 60
Query: 61 DIFIARTNEKHSESAASYIESQVIKAREQQQQQQQQHQKPQQHQQMQVQQLLLQRHAQQQ 120
DIFIARTNEKHSE AASYIE+Q+IKAREQQQQQ QQ +PQQ Q Q + Q Q+
Sbjct: 61 DIFIARTNEKHSEVAASYIETQLIKAREQQQQQNQQQPQPQQSQHQQQHMQMQQLLLQRA 120
Query: 121 QQQQR------------------------RDSTQHLNDTGDDL--RPGFAKAFTTKMYED 154
QQQQ+ RD LN + + L PG A A TKMYE+
Sbjct: 121 QQQQQQQQQQQQQPQSQQQQSQPQQQQQSRDRPHLLNGSANGLVGNPGTANALATKMYEE 180
Query: 155 RLKKLPFQRDSLDDATIKPRLSDNMTQLLDPNHATLLKAAAIGSQPSGQTLHGTHG-VSQ 213
RLK LP QRDSLDDA K R +NM QLLDPNHA +LK+AA QPSGQ LHG G +S
Sbjct: 181 RLK-LPLQRDSLDDAATKQRFGENMGQLLDPNHAPILKSAAAPGQPSGQVLHGAAGGMSP 239
Query: 214 QVQSRSQQPPLSTQEVKTEMNPTMNPRAAGSEGSLIGVHGSNQGAGNVTLKGWPLTGLDQ 273
QVQ+R+QQ P ST ++K E++P +NPRA G EGSL+G+ GSN G+ N+TLKGWPLTGL+Q
Sbjct: 240 QVQARTQQLPGSTLDIKGEISPVLNPRAVGPEGSLMGMPGSNPGSNNLTLKGWPLTGLEQ 299
Query: 274 FRSGLLQQQKSLTQ---PYNQLQL------QQLMLQAQQNLASPSANDLESRKLRMLHNS 324
RSGLLQQQK Q P++QLQ+ QQLML AQQNLASPSA++ ESR+LRML N+
Sbjct: 300 LRSGLLQQQKPFMQAPQPFHQLQMLTPQHQQQLML-AQQNLASPSASE-ESRRLRMLLNN 357
Query: 325 RNMGLARDGSSNSVGDLVSTVGSAMQIISPGLPRGDNDLLIKIQQQQQQLQHYSH----- 379
RN+GL +DG SN VGD+VS VGS +Q P PRGD D+L+K++ Q Q Q
Sbjct: 358 RNIGLNKDGLSNPVGDVVSNVGSPLQGGGPPFPRGDTDMLVKLKLAQLQQQQQQQSSTNA 417
Query: 380 -------HPLSSQQSQNSNPLLQQQDKILAGG--SMTMDGSMSNTFQGNDQASKNQIGRK 430
H LS+QQSQ SN + QQDK+ GG S+T+DGSMSN+F+GNDQ SKNQIGRK
Sbjct: 418 QQQQLQQHTLSNQQSQTSNHSMHQQDKVGGGGGGSVTVDGSMSNSFRGNDQVSKNQIGRK 477
Query: 431 RKQAVSSSGPANSSGTANTPGPTPSSPSSPST-HTPGDVISRPTLQHNGASSKSLLMFGS 489
RKQ SSSGPANSSGTANT GP+PSS S + HTPGDVIS P L H+G+SSK L+MF +
Sbjct: 478 RKQPGSSSGPANSSGTANTTGPSPSSAPSTPSTHTPGDVISMPALPHSGSSSKPLMMFST 537
Query: 490 DGMGSLTSAPNQL---------TDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVG 540
DG G+LTS NQL D+DRFV+DGSLD+NVESFLS DD DPRD VGR +V
Sbjct: 538 DGTGTLTSPSNQLWDDKDLELQADVDRFVEDGSLDENVESFLSHDDTDPRDTVGRCMDVS 597
Query: 541 KGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWI 600
KGFTF++ + ASTSKV CHFS DGKLLA+GGHDKK VLW T+S K+TLEEH+ I
Sbjct: 598 KGFTFSDVNSVRASTSKVSCCHFSSDGKLLASGGHDKKVVLWYTDSLKQKATLEEHSSLI 657
Query: 601 TDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCD 660
TDVRFSPS+ RLATSS D+TVRVWD +NP YSLRTFTGHST+VMSLDFHP+K+DL+CSCD
Sbjct: 658 TDVRFSPSMPRLATSSFDKTVRVWDVDNPGYSLRTFTGHSTSVMSLDFHPNKDDLICSCD 717
Query: 661 NNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKL 720
+ EIRYWSINNGSCA V K G TQMRFQPRLGR LAAA EN +SI DVETQVCR L
Sbjct: 718 GDGEIRYWSINNGSCARVSK--GGTTQMRFQPRLGRYLAAAAENIVSIFDVETQVCRYSL 775
Query: 721 QGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTF 780
+GH V VCW+ SGE LASVS++ VRVW++GSGS GEC+HELSC GNKFH VFHPT+
Sbjct: 776 KGHTKPVVCVCWDPSGELLASVSEDSVRVWTLGSGSDGECVHELSCNGNKFHKSVFHPTY 835
Query: 781 PSLLVIGCYETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 837
PSLLVIGCY++LELWNM+ENKT+TLSAHD L++SLA STVNG+VASASHDK +K+WK
Sbjct: 836 PSLLVIGCYQSLELWNMSENKTMTLSAHDGLITSLAVSTVNGLVASASHDKFLKLWK 892
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449441952|ref|XP_004138746.1| PREDICTED: transcriptional corepressor LEUNIG-like isoform 2 [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 1042 bits (2694), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 572/899 (63%), Positives = 667/899 (74%), Gaps = 70/899 (7%)
Query: 1 MSQNNWEADKMLDVYIYDYLLKRKLHASAKAFQTEGKVSTDPVAIDAPGGFLFEWWSVFW 60
MSQ NWEADKMLDVYI+DYL+KR L A+A+AFQ EGKVS+DPVAIDAPGGFLFEWWSVFW
Sbjct: 1 MSQTNWEADKMLDVYIHDYLVKRDLKATAQAFQAEGKVSSDPVAIDAPGGFLFEWWSVFW 60
Query: 61 DIFIARTNEKHSESAASYIESQVIKAREQQQQQQQQHQKPQQHQQMQVQQ--LLLQRHAQ 118
DIFIARTNEKHS+ AASYIE+Q+IKAREQQQ QQQQ Q+ Q QQ LL+QRHAQ
Sbjct: 61 DIFIARTNEKHSDVAASYIETQLIKAREQQQHQQQQQQQTQPQQQQPQHMQMLLMQRHAQ 120
Query: 119 QQQQQQ------------------------RRDSTQHLNDTGDDL---------RPGFAK 145
QQQQQQ RRD Q LN + + PG
Sbjct: 121 QQQQQQQQQQHQQQQQPQQQQQQSQQQQQQRRDGAQLLNGSSNGFVGNDPLMRQNPGSVN 180
Query: 146 AFTTKMYEDRLKKLPFQRDSLDDATIKPRLSDNMTQLLDPNHATLLKAAAIGSQPSGQTL 205
A TKMYEDRLK LP QRDSLDD +K R DN+ QLLDPNHA++LK+AA SQ SGQ L
Sbjct: 181 ALATKMYEDRLK-LPLQRDSLDDGAMKQRYGDNVGQLLDPNHASILKSAAATSQSSGQVL 239
Query: 206 HG-THGVSQQVQSRSQQPPLSTQEVKTEMNPTMNPRAAGSEGSLIGVHGSNQGAGNVTLK 264
HG T G+S QVQ RSQQ P ST ++KTE+NP +NPRAAG EGSL+G+ GSN G N+TLK
Sbjct: 240 HGSTGGMSPQVQPRSQQLPGSTPDIKTEINPVLNPRAAGPEGSLMGIPGSNHGGNNLTLK 299
Query: 265 GWPLTGLDQFRSGLLQQQKSLTQP---YNQLQL------QQLMLQAQQNLASPSANDLES 315
GWPLTGLDQ RSG+LQQQK Q + QLQ+ QQLML AQQNL SPS ND +
Sbjct: 300 GWPLTGLDQLRSGILQQQKPFIQAPQSFPQLQMLTPQHQQQLML-AQQNLTSPSVND-DG 357
Query: 316 RKLRMLHNSRNMGLARDGSSNSVGDLVSTVGSAMQIISPGLPRGDN-DLLIKIQQ----- 369
R+LRML N+R +A+DG SNSVGD+V VGS +Q SP LPRGDN D+++KI+
Sbjct: 358 RRLRMLLNTR---MAKDGLSNSVGDVVPNVGSPLQAGSPLLPRGDNTDMILKIKMAQLQQ 414
Query: 370 ---------QQQQLQHYSHHPLSSQQSQNSNPLLQQQDKILAGGSMTMDGSMSNTFQGND 420
QQQQ Q H LS+QQSQ+SN + QQ+KI GS+TMDGSMSN+F+GND
Sbjct: 415 QQQQQQSSSQQQQQQQLQQHALSNQQSQSSNHNMHQQEKIGGAGSVTMDGSMSNSFRGND 474
Query: 421 QASKNQIGRKRKQAVSSSGPANSSGTANTPGPTPSSPSSPST-HTPGDVISRPTLQHNGA 479
Q SKNQ GRKRKQ VSSSGPANSSGTANT GP+PSS S + HTPGD IS P L H+G+
Sbjct: 475 QVSKNQTGRKRKQPVSSSGPANSSGTANTAGPSPSSAPSTPSTHTPGDAISMPALPHSGS 534
Query: 480 SSKSL-LMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAE 538
SSK L +MF SDG G+ TS NQL DMDR+V+DGSLDDNV+SFLS DD DPRD VGR +
Sbjct: 535 SSKPLTMMFNSDGTGTFTSPSNQLADMDRYVEDGSLDDNVDSFLSHDDGDPRDPVGRCMD 594
Query: 539 VGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQ 598
KGFTFTE + ASTSKV SCHFS DGKLL +GGHDKKAVLW TE+ K++LEEH
Sbjct: 595 GSKGFTFTEVNSVRASTSKVSSCHFSSDGKLLVSGGHDKKAVLWYTENLKPKTSLEEHAA 654
Query: 599 WITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCS 658
+TDVRFSPS+ RLATSS DRTVRVWD +N YSLRTFTGHS +VMSLDFHP K+D +CS
Sbjct: 655 IVTDVRFSPSMPRLATSSFDRTVRVWDADNHCYSLRTFTGHSASVMSLDFHPKKDDFICS 714
Query: 659 CDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRL 718
CD + EIRYW+I NGSCA VFK +G MRFQPRLGR +A ++N ++I DVETQ
Sbjct: 715 CDGDGEIRYWNITNGSCAAVFKGGTGP--MRFQPRLGRYFSAVVDNIVTIFDVETQARVH 772
Query: 719 KLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHP 778
L+GH V S+CW+ SGE+LASVS++ VRVW++ SG++GE IHELSC GNKFHSCVFHP
Sbjct: 773 SLRGHTKTVQSLCWDPSGEFLASVSEDSVRVWTLASGNEGESIHELSCNGNKFHSCVFHP 832
Query: 779 TFPSLLVIGCYETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 837
T+ +LLVIGCYE+LELWN TENKT+TLSAH+ LVSSLA S +G+VASASHD+ +K+WK
Sbjct: 833 TYSTLLVIGCYESLELWNTTENKTMTLSAHEGLVSSLAVSAASGLVASASHDRFIKLWK 891
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357466351|ref|XP_003603460.1| NAD(P)H-quinone oxidoreductase subunit [Medicago truncatula] gi|355492508|gb|AES73711.1| NAD(P)H-quinone oxidoreductase subunit [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 1034 bits (2674), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 573/950 (60%), Positives = 673/950 (70%), Gaps = 122/950 (12%)
Query: 1 MSQNNWEADKMLDVYIYDYLLKRKLHASAKAFQTEGKVSTDPVAIDAPGGFLFEWWSVFW 60
MSQ NWEADKMLDVYI+DYL+KR L ASA+AFQ EGKVS+DPVAIDAPGGFLFEWWSVFW
Sbjct: 1 MSQTNWEADKMLDVYIHDYLVKRDLKASAQAFQAEGKVSSDPVAIDAPGGFLFEWWSVFW 60
Query: 61 DIFIARTNEKHSESAASYIESQVIKAREQQQQQQQ------------------------- 95
DIFIARTNEKHSE AASYIE+Q+IKAREQQQQQQQ
Sbjct: 61 DIFIARTNEKHSEVAASYIETQLIKAREQQQQQQQQQQQPQPQQSQHAQQQQQQHMQMQQ 120
Query: 96 ----QHQKPQQHQQMQVQQLLLQRHAQQQQQQQRRDSTQHLNDTGDDL--RPGFAKAFTT 149
+H + QQ QQ QQ Q Q QQQQ RD T LN + + L P A A T
Sbjct: 121 LLMQRHAQQQQQQQQHQQQPQSQPQQPQPQQQQNRDRTHLLNGSANGLAGNPATANAIAT 180
Query: 150 KMYEDRLKKLPFQRDSLDDATIKPRLSDNMTQLLDPNHATLLKAAAIGSQPSGQTLHGTH 209
KMYE+RLK P QRDSLDDA +K R +NM QLLDPNHA++LK+AA G QPSGQ LHGT
Sbjct: 181 KMYEERLKGPP-QRDSLDDAAMKQRFGENMGQLLDPNHASILKSAAAGGQPSGQVLHGTA 239
Query: 210 G-VSQQVQSRSQQPPLSTQEVKTEMNPTMNPRAAGSEGSLIGVHGSNQGAGNVTLKGWPL 268
G +S QVQ+RSQQ P ST ++K+E+NP +NPRAAG EGSL+G+ GSNQG N+TLKGWPL
Sbjct: 240 GGMSPQVQARSQQLPGSTTDIKSEINPVLNPRAAGPEGSLLGISGSNQGNNNLTLKGWPL 299
Query: 269 TGLDQFRSGLLQQQKSLTQ---PYNQLQL------QQLMLQAQQNLASPSANDLESRKLR 319
TGL+Q RSGLLQQQK Q P++QLQ+ QQLML AQQ+LASPSA++ ESR+LR
Sbjct: 300 TGLEQLRSGLLQQQKPYMQAPQPFHQLQMLTPQHQQQLML-AQQSLASPSASE-ESRRLR 357
Query: 320 MLHNSRNMGLARDGSSNSVGDLVSTVGSAMQIISPGLPRGDNDLLIKIQQQ--------- 370
ML N+RN+GL +DG SN GD++S VGS + P PRGD D+L+K++
Sbjct: 358 MLLNNRNIGLNKDGLSNPGGDMLSNVGSPLHGGGPPFPRGDTDMLMKLKLAQLQQQQQQQ 417
Query: 371 --------QQQLQHYSHHPLSSQQSQNSNPLLQQQDKILAGG-SMTMDGSMSNTFQGNDQ 421
Q Q H LS+QQSQ SN + QQDK+ GG S+TMDGSMSN+++GNDQ
Sbjct: 418 QHQQQSSINAQQQQLQQHALSNQQSQTSNHSMHQQDKVGGGGGSVTMDGSMSNSYRGNDQ 477
Query: 422 --------------------------------------------ASKNQIGRKRKQAVSS 437
SKNQ+GRKRKQ VSS
Sbjct: 478 IKVQPTEQSEEVLMFCGIPPFACFWSKDEILNDGWLHSPIFAIVVSKNQMGRKRKQPVSS 537
Query: 438 SGPANSSGTANTPGPTPSSPSSPST-HTPGDVISRPTLQHNGASSKSLLMFGSDGMGSLT 496
SGPANSSGTANT GP+PSS S + HTPGD +S P L HN +SSK L+MF +DG G+LT
Sbjct: 538 SGPANSSGTANTAGPSPSSAPSTPSTHTPGDAVSMPALPHNSSSSKPLMMFSTDGTGTLT 597
Query: 497 SAPNQL---------TDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTE 547
S NQL D+DRFVDDGSLDDNVESFLS DD DPRD VGR +V KGFTF++
Sbjct: 598 SPSNQLWDDKDLELKADVDRFVDDGSLDDNVESFLSQDDTDPRDPVGRCMDVSKGFTFSD 657
Query: 548 FQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSP 607
+ AS+SK+ CHFS DGKLLA+GGHDKKAV+W +S K+ LEEH+ ITDVRFS
Sbjct: 658 VNSVRASSSKIACCHFSSDGKLLASGGHDKKAVIWYADSLKQKAILEEHSALITDVRFSA 717
Query: 608 SLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRY 667
S+ RLATSS D+TVRVWD +NP YSLRTFTGHST+VMSLDFHP+K+DL+CSCD + EIRY
Sbjct: 718 SMPRLATSSFDKTVRVWDVDNPGYSLRTFTGHSTSVMSLDFHPNKDDLICSCDGDGEIRY 777
Query: 668 WSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQV 727
WSINNGSC V K G TQMRFQPRLGR LAAA EN +SILDVETQ CR L+GH +
Sbjct: 778 WSINNGSCVRVSK--GGTTQMRFQPRLGRYLAAAAENIVSILDVETQACRYSLKGHTKTI 835
Query: 728 HSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIG 787
SVCW+ SGE LASVS++ VR+W++ +GEC+HELSC G+KFHSCVFHPTFPSLLVIG
Sbjct: 836 DSVCWDPSGELLASVSEDSVRIWTL----EGECVHELSCNGSKFHSCVFHPTFPSLLVIG 891
Query: 788 CYETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 837
CY++LELWNM ENKT+TLSAHD L+++LA STVNG+VASASHDK +K+WK
Sbjct: 892 CYQSLELWNMAENKTMTLSAHDGLITALAVSTVNGLVASASHDKFIKLWK 941
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449441950|ref|XP_004138745.1| PREDICTED: transcriptional corepressor LEUNIG-like isoform 1 [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 1033 bits (2671), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 572/908 (62%), Positives = 667/908 (73%), Gaps = 79/908 (8%)
Query: 1 MSQNNWEADKMLDVYIYDYLLKRKLHASAKAFQTEGKVSTDPVAIDAPGGFLFEWWSVFW 60
MSQ NWEADKMLDVYI+DYL+KR L A+A+AFQ EGKVS+DPVAIDAPGGFLFEWWSVFW
Sbjct: 1 MSQTNWEADKMLDVYIHDYLVKRDLKATAQAFQAEGKVSSDPVAIDAPGGFLFEWWSVFW 60
Query: 61 DIFIARTNEKHSESAASYIESQVIKAREQQQQQQQQHQKPQQHQQMQVQQ--LLLQRHAQ 118
DIFIARTNEKHS+ AASYIE+Q+IKAREQQQ QQQQ Q+ Q QQ LL+QRHAQ
Sbjct: 61 DIFIARTNEKHSDVAASYIETQLIKAREQQQHQQQQQQQTQPQQQQPQHMQMLLMQRHAQ 120
Query: 119 QQQQQQ------------------------RRDSTQHLNDTGDDL---------RPGFAK 145
QQQQQQ RRD Q LN + + PG
Sbjct: 121 QQQQQQQQQQHQQQQQPQQQQQQSQQQQQQRRDGAQLLNGSSNGFVGNDPLMRQNPGSVN 180
Query: 146 AFTTKMYEDRLKKLPFQRDSLDDATIKPRLSDNMTQLLDPNHATLLKAAAIGSQPSGQTL 205
A TKMYEDRLK LP QRDSLDD +K R DN+ QLLDPNHA++LK+AA SQ SGQ L
Sbjct: 181 ALATKMYEDRLK-LPLQRDSLDDGAMKQRYGDNVGQLLDPNHASILKSAAATSQSSGQVL 239
Query: 206 HG-THGVSQQVQSRSQQPPLSTQEVKTEMNPTMNPRAAGSEGSLIGVHGSNQGAGNVTLK 264
HG T G+S QVQ RSQQ P ST ++KTE+NP +NPRAAG EGSL+G+ GSN G N+TLK
Sbjct: 240 HGSTGGMSPQVQPRSQQLPGSTPDIKTEINPVLNPRAAGPEGSLMGIPGSNHGGNNLTLK 299
Query: 265 GWPLTGLDQFRSGLLQQQKSLTQP---YNQLQL------QQLMLQAQQNLASPSANDLES 315
GWPLTGLDQ RSG+LQQQK Q + QLQ+ QQLML AQQNL SPS ND +
Sbjct: 300 GWPLTGLDQLRSGILQQQKPFIQAPQSFPQLQMLTPQHQQQLML-AQQNLTSPSVND-DG 357
Query: 316 RKLRMLHNSRNMGLARDGSSNSVGDLVSTVGSAMQIISPGLPRGDN-DLLIKIQQ----- 369
R+LRML N+R +A+DG SNSVGD+V VGS +Q SP LPRGDN D+++KI+
Sbjct: 358 RRLRMLLNTR---MAKDGLSNSVGDVVPNVGSPLQAGSPLLPRGDNTDMILKIKMAQLQQ 414
Query: 370 ---------QQQQLQHYSHHPLSSQQSQNSNPLLQQQDKILAGGSMTMDGSMSNTFQGND 420
QQQQ Q H LS+QQSQ+SN + QQ+KI GS+TMDGSMSN+F+GND
Sbjct: 415 QQQQQQSSSQQQQQQQLQQHALSNQQSQSSNHNMHQQEKIGGAGSVTMDGSMSNSFRGND 474
Query: 421 QASKNQIGRKRKQAVSSSGPANSSGTANTPGPTPSSPSSPST-HTPGDVISRPTLQHNGA 479
Q SKNQ GRKRKQ VSSSGPANSSGTANT GP+PSS S + HTPGD IS P L H+G+
Sbjct: 475 QVSKNQTGRKRKQPVSSSGPANSSGTANTAGPSPSSAPSTPSTHTPGDAISMPALPHSGS 534
Query: 480 SSKSL-LMFGSDGMGSLTSAPNQL---------TDMDRFVDDGSLDDNVESFLSPDDADP 529
SSK L +MF SDG G+ TS NQL DMDR+V+DGSLDDNV+SFLS DD DP
Sbjct: 535 SSKPLTMMFNSDGTGTFTSPSNQLWDDKELELQADMDRYVEDGSLDDNVDSFLSHDDGDP 594
Query: 530 RDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTV 589
RD VGR + KGFTFTE + ASTSKV SCHFS DGKLL +GGHDKKAVLW TE+
Sbjct: 595 RDPVGRCMDGSKGFTFTEVNSVRASTSKVSSCHFSSDGKLLVSGGHDKKAVLWYTENLKP 654
Query: 590 KSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFH 649
K++LEEH +TDVRFSPS+ RLATSS DRTVRVWD +N YSLRTFTGHS +VMSLDFH
Sbjct: 655 KTSLEEHAAIVTDVRFSPSMPRLATSSFDRTVRVWDADNHCYSLRTFTGHSASVMSLDFH 714
Query: 650 PSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISIL 709
P K+D +CSCD + EIRYW+I NGSCA VFK +G MRFQPRLGR +A ++N ++I
Sbjct: 715 PKKDDFICSCDGDGEIRYWNITNGSCAAVFKGGTGP--MRFQPRLGRYFSAVVDNIVTIF 772
Query: 710 DVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCTGN 769
DVETQ L+GH V S+CW+ SGE+LASVS++ VRVW++ SG++GE IHELSC GN
Sbjct: 773 DVETQARVHSLRGHTKTVQSLCWDPSGEFLASVSEDSVRVWTLASGNEGESIHELSCNGN 832
Query: 770 KFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASH 829
KFHSCVFHPT+ +LLVIGCYE+LELWN TENKT+TLSAH+ LVSSLA S +G+VASASH
Sbjct: 833 KFHSCVFHPTYSTLLVIGCYESLELWNTTENKTMTLSAHEGLVSSLAVSAASGLVASASH 892
Query: 830 DKCVKIWK 837
D+ +K+WK
Sbjct: 893 DRFIKLWK 900
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449522548|ref|XP_004168288.1| PREDICTED: transcriptional corepressor LEUNIG-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 1033 bits (2670), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 572/908 (62%), Positives = 667/908 (73%), Gaps = 79/908 (8%)
Query: 1 MSQNNWEADKMLDVYIYDYLLKRKLHASAKAFQTEGKVSTDPVAIDAPGGFLFEWWSVFW 60
MSQ NWEADKMLDVYI+DYL+KR L A+A+AFQ EGKVS+DPVAIDAPGGFLFEWWSVFW
Sbjct: 1 MSQTNWEADKMLDVYIHDYLVKRDLKATAQAFQAEGKVSSDPVAIDAPGGFLFEWWSVFW 60
Query: 61 DIFIARTNEKHSESAASYIESQVIKAREQQQQQQQQHQKPQQHQQMQVQQ--LLLQRHAQ 118
DIFIARTNEKHS+ AASYIE+Q+IKAREQQQ QQQQ Q+ Q QQ LL+QRHAQ
Sbjct: 61 DIFIARTNEKHSDVAASYIETQLIKAREQQQHQQQQQQQTQPQQQQPQHMQMLLMQRHAQ 120
Query: 119 QQQQQQ------------------------RRDSTQHLNDTGDDL---------RPGFAK 145
QQQQQQ RRD Q LN + + PG
Sbjct: 121 QQQQQQQQQQHQQQQQPQQQQQQSQQQQQQRRDGAQLLNGSSNGFVGNDPLMRQNPGSVN 180
Query: 146 AFTTKMYEDRLKKLPFQRDSLDDATIKPRLSDNMTQLLDPNHATLLKAAAIGSQPSGQTL 205
A TKMYEDRLK LP QRDSLDD +K R DN+ QLLDPNHA++LK+AA SQ SGQ L
Sbjct: 181 ALATKMYEDRLK-LPLQRDSLDDGAMKQRYGDNVGQLLDPNHASILKSAAATSQSSGQVL 239
Query: 206 HG-THGVSQQVQSRSQQPPLSTQEVKTEMNPTMNPRAAGSEGSLIGVHGSNQGAGNVTLK 264
HG T G+S QVQ RSQQ P ST ++KTE+NP +NPRAAG EGSL+G+ GSN G N+TLK
Sbjct: 240 HGSTGGMSPQVQPRSQQLPGSTPDIKTEINPVLNPRAAGPEGSLMGIPGSNHGGNNLTLK 299
Query: 265 GWPLTGLDQFRSGLLQQQKSLTQP---YNQLQL------QQLMLQAQQNLASPSANDLES 315
GWPLTGLDQ RSG+LQQQK Q + QLQ+ QQLML AQQNL SPS ND +
Sbjct: 300 GWPLTGLDQLRSGILQQQKPFIQAPQSFPQLQMLTPQHQQQLML-AQQNLTSPSVND-DG 357
Query: 316 RKLRMLHNSRNMGLARDGSSNSVGDLVSTVGSAMQIISPGLPRGDN-DLLIKIQQ----- 369
R+LRML N+R +A+DG SNSVGD+V VGS +Q SP LPRGDN D+++KI+
Sbjct: 358 RRLRMLLNTR---MAKDGLSNSVGDVVPNVGSPLQAGSPLLPRGDNTDMILKIKMAQLQQ 414
Query: 370 ---------QQQQLQHYSHHPLSSQQSQNSNPLLQQQDKILAGGSMTMDGSMSNTFQGND 420
QQQQ Q H LS+QQSQ+SN + QQ+KI GS+TMDGSMSN+F+GND
Sbjct: 415 QQQQQQSSSQQQQQQQLQQHTLSNQQSQSSNHNMHQQEKIGGAGSVTMDGSMSNSFRGND 474
Query: 421 QASKNQIGRKRKQAVSSSGPANSSGTANTPGPTPSSPSSPST-HTPGDVISRPTLQHNGA 479
Q SKNQ GRKRKQ VSSSGPANSSGTANT GP+PSS S + HTPGD IS P L H+G+
Sbjct: 475 QVSKNQTGRKRKQPVSSSGPANSSGTANTAGPSPSSAPSTPSTHTPGDAISMPALPHSGS 534
Query: 480 SSKSL-LMFGSDGMGSLTSAPNQL---------TDMDRFVDDGSLDDNVESFLSPDDADP 529
SSK L +MF SDG G+ TS NQL DMDR+V+DGSLDDNV+SFLS DD DP
Sbjct: 535 SSKPLTMMFNSDGTGTFTSPSNQLWDDKELELQADMDRYVEDGSLDDNVDSFLSHDDGDP 594
Query: 530 RDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTV 589
RD VGR + KGFTFTE + ASTSKV SCHFS DGKLL +GGHDKKAVLW TE+
Sbjct: 595 RDPVGRCMDGSKGFTFTEVNSVRASTSKVSSCHFSSDGKLLVSGGHDKKAVLWYTENLKP 654
Query: 590 KSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFH 649
K++LEEH +TDVRFSPS+ RLATSS DRTVRVWD +N YSLRTFTGHS +VMSLDFH
Sbjct: 655 KTSLEEHAAIVTDVRFSPSMPRLATSSFDRTVRVWDADNHCYSLRTFTGHSASVMSLDFH 714
Query: 650 PSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISIL 709
P K+D +CSCD + EIRYW+I NGSCA VFK +G MRFQPRLGR +A ++N ++I
Sbjct: 715 PKKDDFICSCDGDGEIRYWNITNGSCAAVFKGGTGP--MRFQPRLGRYFSAVVDNIVTIF 772
Query: 710 DVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCTGN 769
DVETQ L+GH V S+CW+ SGE+LASVS++ VRVW++ SG++GE IHELSC GN
Sbjct: 773 DVETQARVHSLRGHTKTVQSLCWDPSGEFLASVSEDSVRVWTLASGNEGESIHELSCNGN 832
Query: 770 KFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASH 829
KFHSCVFHPT+ +LLVIGCYE+LELWN TENKT+TLSAH+ LVSSLA S +G+VASASH
Sbjct: 833 KFHSCVFHPTYSTLLVIGCYESLELWNTTENKTMTLSAHEGLVSSLAVSAASGLVASASH 892
Query: 830 DKCVKIWK 837
D+ +K+WK
Sbjct: 893 DRFIKLWK 900
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225430178|ref|XP_002284900.1| PREDICTED: transcriptional corepressor LEUNIG-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1012 bits (2617), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 579/916 (63%), Positives = 672/916 (73%), Gaps = 85/916 (9%)
Query: 1 MSQNNWEADKMLDVYIYDYLLKRKLHASAKAFQTEGKVSTDPVAIDAPGGFLFEWWSVFW 60
MSQ NWEADKMLDVYI+DYL+KR L ASA+AFQ EGKVS+DPVAIDAPGGFLFEWWSVFW
Sbjct: 1 MSQTNWEADKMLDVYIHDYLVKRDLKASAQAFQAEGKVSSDPVAIDAPGGFLFEWWSVFW 60
Query: 61 DIFIARTNEKHSESAASYIESQVIKAREQQQQQQQQHQKPQQHQQMQVQQLLLQ------ 114
DIFIARTNEKHSE AASYIE+Q+IKAREQQQQQQQQ Q+PQQ Q Q QQ Q
Sbjct: 61 DIFIARTNEKHSEVAASYIETQLIKAREQQQQQQQQQQQPQQPQHQQQQQQQQQLQMQQL 120
Query: 115 ---RHAQQQQQQQ----------------------RRDSTQHLNDTGDDL---------R 140
RHAQQQQQQQ RRD LN T + L
Sbjct: 121 LLQRHAQQQQQQQQQQQQQQQQQQQQQQQQPQQQQRRDGAHLLNGTTNGLVGNDPLMRTN 180
Query: 141 PGFAKAFTTKMYEDRLKKLPFQRDSLDDATIKPRLSDNMTQLLDPNHATLLKAAAIGSQP 200
P A A TKMYE+RLK LP QRDSLDDAT+K R S+N+ QLLDPNHAT+LK+AA QP
Sbjct: 181 PATANALATKMYEERLK-LPIQRDSLDDATMKQRFSENVGQLLDPNHATILKSAAAAGQP 239
Query: 201 SGQTLH-GTHGVSQQVQSRSQQPPLSTQEVKTEMNPTMNPRAAGSEGSLIGVHGSNQGAG 259
SGQ LH G+S QVQ+R+QQ P ST ++K+EMNP +NPRA G EGSLIG+ GSNQG
Sbjct: 240 SGQVLHVSAGGMSPQVQARNQQLPGSTPDIKSEMNPVLNPRAGGPEGSLIGIPGSNQGGN 299
Query: 260 NVTLKGWPLTGLDQFRSGLLQQQKSLTQ----PYNQLQLQQLMLQAQQNL----ASPSAN 311
N+TLKGWPLTGLDQ RSGLLQQ K Q P++QLQ+ Q SP ++
Sbjct: 300 NLTLKGWPLTGLDQLRSGLLQQPKPFIQAAPQPFHQLQMLPQHQQQLLLAQQSLTSPPSD 359
Query: 312 DLESRKLRMLHNSRNMGLARDGSSNSVGDLVSTVGSAMQIISPGLPRGDNDLLIKIQQQQ 371
ESR+LRML N+RNM L +DG SNS+GD V VGS +Q LPRGD ++L+K++ Q
Sbjct: 360 --ESRRLRMLLNNRNMNLGKDGPSNSIGD-VPNVGSPLQPGCAVLPRGDTEMLMKLKMAQ 416
Query: 372 QQ--------------------LQHYSHHPLSSQQSQNSNPLLQQQDKILAGGSMTMDGS 411
Q H LSSQQSQ+SN + QQDK+ GS+T+DGS
Sbjct: 417 MHHQQQQQQQQQQNSNQPQQQQQQQLQQHALSSQQSQSSNHNMHQQDKMGGAGSITVDGS 476
Query: 412 MSNTFQGNDQASKNQIGRKRKQAVSSSGPANSSGTANTPGPTPSSPSSPST-HTPGDVIS 470
MSN+F+GNDQASKNQ GRKRKQ VSSSGPANSSGTANT GP+PSS S + HTPGDVIS
Sbjct: 477 MSNSFRGNDQASKNQTGRKRKQPVSSSGPANSSGTANTAGPSPSSAPSTPSTHTPGDVIS 536
Query: 471 RPTLQHNGASSKSLLMFGSDGMGSLTSAPNQL---------TDMDRFVDDGSLDDNVESF 521
P L H+G+SSK L+MF +DG G+LTS NQL DMDRFV+DGSLDDNVESF
Sbjct: 537 MPALPHSGSSSKPLMMFSTDGTGTLTSPSNQLWDDKDLELQADMDRFVEDGSLDDNVESF 596
Query: 522 LSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVL 581
LS DD DPRD VGR +V KGFTFTE + AS SKV CHFS DGKLLA+GGHDKKAVL
Sbjct: 597 LSHDDTDPRDTVGRCMDVSKGFTFTEVSSVRASASKVICCHFSSDGKLLASGGHDKKAVL 656
Query: 582 WCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHST 641
W T++ K+TLEEH+ ITDVRFSPS+ RLATSS D+TVRVWD ++ YSLRTFTGHS
Sbjct: 657 WYTDTLKTKTTLEEHSMLITDVRFSPSMPRLATSSFDKTVRVWDADSTSYSLRTFTGHSA 716
Query: 642 TVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAA 701
+VMSLDFHP+++DL+CSCD + EIRYW+I NGSCA VFK G QMRFQPR GR LAAA
Sbjct: 717 SVMSLDFHPNQDDLICSCDGDGEIRYWNIKNGSCARVFK--GGTAQMRFQPRHGRYLAAA 774
Query: 702 IENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECI 761
EN +SILDVETQ CR LQGH +HSVCW+ SGE+LASVS++ VRVW++GSG++GEC+
Sbjct: 775 AENVVSILDVETQACRHSLQGHTKPIHSVCWDPSGEFLASVSEDSVRVWTLGSGNEGECV 834
Query: 762 HELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSAHDKLVSSLAASTVN 821
HELSC GNKFHSCVFHPT+ SLLVIGCY++LELWNM+ENKT+TLSAHD L+++LA STV+
Sbjct: 835 HELSCNGNKFHSCVFHPTYSSLLVIGCYQSLELWNMSENKTMTLSAHDGLIAALAVSTVS 894
Query: 822 GMVASASHDKCVKIWK 837
G+VASASHDK VK+WK
Sbjct: 895 GLVASASHDKIVKLWK 910
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 837 | ||||||
| UNIPROTKB|Q5M786 | 334 | wdr5 "WD repeat-containing pro | 0.352 | 0.883 | 0.277 | 4.1e-26 | |
| DICTYBASE|DDB_G0287273 | 335 | wdr5 "WD40 repeat-containing p | 0.327 | 0.817 | 0.274 | 8.7e-26 | |
| ASPGD|ASPL0000006214 | 434 | AN6385 [Emericella nidulans (t | 0.321 | 0.619 | 0.326 | 1.2e-25 | |
| UNIPROTKB|G3N3E5 | 308 | WDR5 "WD repeat-containing pro | 0.329 | 0.896 | 0.282 | 8.1e-25 | |
| UNIPROTKB|Q2KIG2 | 334 | WDR5 "WD repeat-containing pro | 0.329 | 0.826 | 0.282 | 8.1e-25 | |
| UNIPROTKB|P61964 | 334 | WDR5 "WD repeat-containing pro | 0.329 | 0.826 | 0.282 | 8.1e-25 | |
| UNIPROTKB|F1S034 | 334 | WDR5 "Uncharacterized protein" | 0.329 | 0.826 | 0.282 | 8.1e-25 | |
| MGI|MGI:2155884 | 334 | Wdr5 "WD repeat domain 5" [Mus | 0.329 | 0.826 | 0.282 | 8.1e-25 | |
| RGD|1305159 | 334 | Wdr5 "WD repeat domain 5" [Rat | 0.329 | 0.826 | 0.282 | 8.1e-25 | |
| ASPGD|ASPL0000032162 | 1364 | AN8468 [Emericella nidulans (t | 0.339 | 0.208 | 0.285 | 9.2e-25 |
| UNIPROTKB|Q5M786 wdr5 "WD repeat-containing protein 5" [Xenopus (Silurana) tropicalis (taxid:8364)] | Back alignment and assigned GO terms |
|---|
Score = 304 (112.1 bits), Expect = 4.1e-26, P = 4.1e-26
Identities = 87/313 (27%), Positives = 149/313 (47%)
Query: 535 RSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLE 594
+ A V +T +F L T V S FSP+G+ LA+ DK +W + T+
Sbjct: 27 KPAPVKPNYTL-KFTLA-GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTIS 84
Query: 595 EHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKED 654
H I+DV +S + L ++S D+T+++WD + L+T GHS V +F+P + +
Sbjct: 85 GHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGK-CLKTLKGHSNYVFCCNFNP-QSN 142
Query: 655 LLCSCDNNSEIRYWSINNGSCAGVFKCQSG-ATQMRFQPRLGRILAAAIENYISILDVET 713
L+ S + +R W + G C S + + F I++++ + I D +
Sbjct: 143 LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS 202
Query: 714 QVCRLKLQGHKNQ-VHSVCWNTSGEY-LASVSDELVRVWSIGSGSKGECIHELSCTGNKF 771
C L N V V ++ +G+Y LA+ D +++W SKG+C+ +C N+
Sbjct: 203 GQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDY---SKGKCLKTYTCHKNEK 259
Query: 772 HSCVF---HPTFPSLLVIGCYETLE-LWNM-TENKTLTLSAHDKLVSSLAASTVNGMVAS 826
+ C+F T +V G + L +WN+ T+ L H +V S A ++AS
Sbjct: 260 Y-CIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEVVQKLQGHTDVVISTACHPTENIIAS 318
Query: 827 AS--HDKCVKIWK 837
A+ +DK +K+WK
Sbjct: 319 AALENDKTIKLWK 331
|
|
| DICTYBASE|DDB_G0287273 wdr5 "WD40 repeat-containing protein" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
|---|
Score = 301 (111.0 bits), Expect = 8.7e-26, P = 8.7e-26
Identities = 80/291 (27%), Positives = 142/291 (48%)
Query: 558 VESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA 617
+ S FSPDGK LA+ DK +W + TLE H + I+D+ +S + ++S
Sbjct: 49 ISSVKFSPDGKWLASASADKTIKIWGAYDGKFERTLEGHKEGISDIAWSQDSKLICSASD 108
Query: 618 DRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAG 677
D+T+++WD E+ ++T GH V + F+P + +L+ S + +R W +N G C
Sbjct: 109 DKTIKIWDVESGKM-VKTLKGHKEYVFGVSFNP-QSNLIVSGSFDENVRIWDVNTGECTK 166
Query: 678 VFKCQSG-ATQMRFQPRLGRILAAAIENYISILDVET-QVCRLKLQGHKNQVHSVCWNTS 735
+ S T + F +++ + + + I D T Q+ +V V ++ +
Sbjct: 167 MISAHSDPVTGVHFNRDGTLVVSGSYDGTVRIWDTTTGQLLNTISTEDGKEVSFVKFSPN 226
Query: 736 GEY-LASVSDELVRVWSIGSGSKGECIHELSCTGNKFHS-CVFHP---TFPSLLVIGCYE 790
G++ LA D +R+WS + K C+ + TG+K C+F T +V G +
Sbjct: 227 GKFVLAGTLDNTLRLWSYNNNKK--CLK--TYTGHKNEKYCIFSTFSVTCGKWIVTGSED 282
Query: 791 TL-ELWNM-TENKTLTLSAHDKLVSSLAASTVNGMVASAS--HDKCVKIWK 837
L ++N+ T TL+ H+ +V ++A ++AS + D+ VKIWK
Sbjct: 283 NLIYIYNLQTREIVQTLAGHEDVVLTVACHPTENIIASGALEKDRSVKIWK 333
|
|
| ASPGD|ASPL0000006214 AN6385 [Emericella nidulans (taxid:162425)] | Back alignment and assigned GO terms |
|---|
Score = 310 (114.2 bits), Expect = 1.2e-25, P = 1.2e-25
Identities = 97/297 (32%), Positives = 145/297 (48%)
Query: 547 EFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFS 606
E Q + + +E+ FSPDG+LLA+G +D LW S +K TLE H+ + V FS
Sbjct: 33 ELQTLEGHSDWIETVTFSPDGRLLASGSNDTTIKLWDPASGGLKQTLEGHSSSVQSVAFS 92
Query: 607 PSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIR 666
P+ LA+ S+D T+++W++ + D T GHS V S+ F P N ++
Sbjct: 93 PNGQLLASGSSDTTIKLWNSAS-DSLKHTMEGHSDRVESVAFSP-----------NGQL- 139
Query: 667 YWSINNGSCAGVFKCQSG-ATQMRFQPRLGRILAA-AIENYISILDVETQVCRLK--LQG 722
W+ GS + S + F P G++LA+ + E I + D T C LK L G
Sbjct: 140 -WNPAIGSLKHTIEGHSDWVLSVAFSPD-GQLLASGSAEKTIKLWDSAT--CGLKHTLGG 195
Query: 723 HKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFP 781
H N V + ++ G LAS S D +++W SGS H L NK S F P
Sbjct: 196 HSNWVLPLVFSPDGRLLASGSNDATIKLWDPPSGSLK---HTLEGHSNKIESLAFSPN-G 251
Query: 782 SLLVIGCYE-TLELWNM-TENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIW 836
LL G + T++LW+ T + TL H +V S+ S + ++ S S D +K+W
Sbjct: 252 QLLASGSSDATIKLWDTATGSFRHTLKGHSDMVLSVVFSPDSQLLESGSGDNTIKLW 308
|
|
| UNIPROTKB|G3N3E5 WDR5 "WD repeat-containing protein 5" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 292 (107.8 bits), Expect = 8.1e-25, P = 8.1e-25
Identities = 83/294 (28%), Positives = 141/294 (47%)
Query: 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLAT 614
T V S FSP+G+ LA+ DK +W + T+ H I+DV +S + L +
Sbjct: 19 TKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVS 78
Query: 615 SSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS 674
+S D+T+++WD + L+T GHS V +F+P + +L+ S + +R W + G
Sbjct: 79 ASDDKTLKIWDVSSGK-CLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGK 136
Query: 675 CAGVFKCQSG-ATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQ-VHSVCW 732
C S + + F I++++ + I D + C L N V V +
Sbjct: 137 CLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKF 196
Query: 733 NTSGEY-LASVSDELVRVWSIGSGSKGECIHELSCTGNKFHS-CVF---HPTFPSLLVIG 787
+ +G+Y LA+ D +++W SKG+C+ + TG+K C+F T +V G
Sbjct: 197 SPNGKYILAATLDNTLKLWDY---SKGKCLK--TYTGHKNEKYCIFANFSVTGGKWIVSG 251
Query: 788 CYETLE-LWNM-TENKTLTLSAHDKLVSSLAASTVNGMVASAS--HDKCVKIWK 837
+ L +WN+ T+ L H +V S A ++ASA+ +DK +K+WK
Sbjct: 252 SEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWK 305
|
|
| UNIPROTKB|Q2KIG2 WDR5 "WD repeat-containing protein 5" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 292 (107.8 bits), Expect = 8.1e-25, P = 8.1e-25
Identities = 83/294 (28%), Positives = 141/294 (47%)
Query: 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLAT 614
T V S FSP+G+ LA+ DK +W + T+ H I+DV +S + L +
Sbjct: 45 TKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVS 104
Query: 615 SSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS 674
+S D+T+++WD + L+T GHS V +F+P + +L+ S + +R W + G
Sbjct: 105 ASDDKTLKIWDVSSGK-CLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGK 162
Query: 675 CAGVFKCQSG-ATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQ-VHSVCW 732
C S + + F I++++ + I D + C L N V V +
Sbjct: 163 CLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKF 222
Query: 733 NTSGEY-LASVSDELVRVWSIGSGSKGECIHELSCTGNKFHS-CVF---HPTFPSLLVIG 787
+ +G+Y LA+ D +++W SKG+C+ + TG+K C+F T +V G
Sbjct: 223 SPNGKYILAATLDNTLKLWDY---SKGKCLK--TYTGHKNEKYCIFANFSVTGGKWIVSG 277
Query: 788 CYETLE-LWNM-TENKTLTLSAHDKLVSSLAASTVNGMVASAS--HDKCVKIWK 837
+ L +WN+ T+ L H +V S A ++ASA+ +DK +K+WK
Sbjct: 278 SEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWK 331
|
|
| UNIPROTKB|P61964 WDR5 "WD repeat-containing protein 5" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 292 (107.8 bits), Expect = 8.1e-25, P = 8.1e-25
Identities = 83/294 (28%), Positives = 141/294 (47%)
Query: 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLAT 614
T V S FSP+G+ LA+ DK +W + T+ H I+DV +S + L +
Sbjct: 45 TKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVS 104
Query: 615 SSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS 674
+S D+T+++WD + L+T GHS V +F+P + +L+ S + +R W + G
Sbjct: 105 ASDDKTLKIWDVSSGK-CLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGK 162
Query: 675 CAGVFKCQSG-ATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQ-VHSVCW 732
C S + + F I++++ + I D + C L N V V +
Sbjct: 163 CLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKF 222
Query: 733 NTSGEY-LASVSDELVRVWSIGSGSKGECIHELSCTGNKFHS-CVF---HPTFPSLLVIG 787
+ +G+Y LA+ D +++W SKG+C+ + TG+K C+F T +V G
Sbjct: 223 SPNGKYILAATLDNTLKLWDY---SKGKCLK--TYTGHKNEKYCIFANFSVTGGKWIVSG 277
Query: 788 CYETLE-LWNM-TENKTLTLSAHDKLVSSLAASTVNGMVASAS--HDKCVKIWK 837
+ L +WN+ T+ L H +V S A ++ASA+ +DK +K+WK
Sbjct: 278 SEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWK 331
|
|
| UNIPROTKB|F1S034 WDR5 "Uncharacterized protein" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
Score = 292 (107.8 bits), Expect = 8.1e-25, P = 8.1e-25
Identities = 83/294 (28%), Positives = 141/294 (47%)
Query: 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLAT 614
T V S FSP+G+ LA+ DK +W + T+ H I+DV +S + L +
Sbjct: 45 TKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVS 104
Query: 615 SSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS 674
+S D+T+++WD + L+T GHS V +F+P + +L+ S + +R W + G
Sbjct: 105 ASDDKTLKIWDVSSGK-CLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGK 162
Query: 675 CAGVFKCQSG-ATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQ-VHSVCW 732
C S + + F I++++ + I D + C L N V V +
Sbjct: 163 CLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKF 222
Query: 733 NTSGEY-LASVSDELVRVWSIGSGSKGECIHELSCTGNKFHS-CVF---HPTFPSLLVIG 787
+ +G+Y LA+ D +++W SKG+C+ + TG+K C+F T +V G
Sbjct: 223 SPNGKYILAATLDNTLKLWDY---SKGKCLK--TYTGHKNEKYCIFANFSVTGGKWIVSG 277
Query: 788 CYETLE-LWNM-TENKTLTLSAHDKLVSSLAASTVNGMVASAS--HDKCVKIWK 837
+ L +WN+ T+ L H +V S A ++ASA+ +DK +K+WK
Sbjct: 278 SEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWK 331
|
|
| MGI|MGI:2155884 Wdr5 "WD repeat domain 5" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 292 (107.8 bits), Expect = 8.1e-25, P = 8.1e-25
Identities = 83/294 (28%), Positives = 141/294 (47%)
Query: 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLAT 614
T V S FSP+G+ LA+ DK +W + T+ H I+DV +S + L +
Sbjct: 45 TKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVS 104
Query: 615 SSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS 674
+S D+T+++WD + L+T GHS V +F+P + +L+ S + +R W + G
Sbjct: 105 ASDDKTLKIWDVSSGK-CLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGK 162
Query: 675 CAGVFKCQSG-ATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQ-VHSVCW 732
C S + + F I++++ + I D + C L N V V +
Sbjct: 163 CLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKF 222
Query: 733 NTSGEY-LASVSDELVRVWSIGSGSKGECIHELSCTGNKFHS-CVF---HPTFPSLLVIG 787
+ +G+Y LA+ D +++W SKG+C+ + TG+K C+F T +V G
Sbjct: 223 SPNGKYILAATLDNTLKLWDY---SKGKCLK--TYTGHKNEKYCIFANFSVTGGKWIVSG 277
Query: 788 CYETLE-LWNM-TENKTLTLSAHDKLVSSLAASTVNGMVASAS--HDKCVKIWK 837
+ L +WN+ T+ L H +V S A ++ASA+ +DK +K+WK
Sbjct: 278 SEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWK 331
|
|
| RGD|1305159 Wdr5 "WD repeat domain 5" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 292 (107.8 bits), Expect = 8.1e-25, P = 8.1e-25
Identities = 83/294 (28%), Positives = 141/294 (47%)
Query: 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLAT 614
T V S FSP+G+ LA+ DK +W + T+ H I+DV +S + L +
Sbjct: 45 TKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVS 104
Query: 615 SSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS 674
+S D+T+++WD + L+T GHS V +F+P + +L+ S + +R W + G
Sbjct: 105 ASDDKTLKIWDVSSGK-CLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGK 162
Query: 675 CAGVFKCQSG-ATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQ-VHSVCW 732
C S + + F I++++ + I D + C L N V V +
Sbjct: 163 CLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKF 222
Query: 733 NTSGEY-LASVSDELVRVWSIGSGSKGECIHELSCTGNKFHS-CVF---HPTFPSLLVIG 787
+ +G+Y LA+ D +++W SKG+C+ + TG+K C+F T +V G
Sbjct: 223 SPNGKYILAATLDNTLKLWDY---SKGKCLK--TYTGHKNEKYCIFANFSVTGGKWIVSG 277
Query: 788 CYETLE-LWNM-TENKTLTLSAHDKLVSSLAASTVNGMVASAS--HDKCVKIWK 837
+ L +WN+ T+ L H +V S A ++ASA+ +DK +K+WK
Sbjct: 278 SEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWK 331
|
|
| ASPGD|ASPL0000032162 AN8468 [Emericella nidulans (taxid:162425)] | Back alignment and assigned GO terms |
|---|
Score = 319 (117.4 bits), Expect = 9.2e-25, P = 9.2e-25
Identities = 84/294 (28%), Positives = 142/294 (48%)
Query: 547 EFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFS 606
E Q + VES FSPDGK L +G +D +W + + TL+ H+ + + FS
Sbjct: 742 EQQTLENHLGPVESVVFSPDGKQLVSGSYDDTVKIWDPATGELLQTLDGHSGTVESLAFS 801
Query: 607 PSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIR 666
P LA+ S D T+ +WD+ + L+TF GH ++ S+ F P ++L S ++S I+
Sbjct: 802 PDGKLLASGSYDNTIDLWDSATGEL-LQTFEGHPHSIWSVAFAPDGKEL-ASASDDSTIK 859
Query: 667 YWSINNGSCAGVFKCQSGATQ-MRFQPRLGRILAAA-IENYISILDVETQVCRLKLQGHK 724
W + G S + + + F P G++LA++ +++ I + + T + L+G
Sbjct: 860 IWDLATGELQQTLDSHSQSVRSVAFSPD-GKLLASSSLDSTIKVWNPATGELQQSLEGRS 918
Query: 725 NQVHSVCWNTSGEYLASVSDE-LVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSL 783
V SV ++ G+ LAS S++ V++W+ +G E + L S F P L
Sbjct: 919 GWVKSVAFSPDGKKLASGSEKNTVKLWNPATG---ELLQTLEGHSQSVRSVAFSPDGKQL 975
Query: 784 LVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIW 836
T++LWN T + T HD + ++A S + S S D +K+W
Sbjct: 976 ASSSSDTTIKLWNSTTGELQQTFKGHDLWIRAVAFSPDGKHLVSGSDDNTIKLW 1029
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q9FUY2 | LEUNG_ARATH | No assigned EC number | 0.5830 | 0.8446 | 0.7593 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 837 | |||
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 5e-62 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 1e-39 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 1e-30 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 1e-26 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 1e-25 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 1e-21 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 3e-15 | |
| smart00320 | 40 | smart00320, WD40, WD40 repeats | 2e-09 | |
| pfam00400 | 39 | pfam00400, WD40, WD domain, G-beta repeat | 3e-09 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 4e-08 | |
| PTZ00420 | 568 | PTZ00420, PTZ00420, coronin; Provisional | 2e-06 | |
| PLN00181 | 793 | PLN00181, PLN00181, protein SPA1-RELATED; Provisio | 3e-06 | |
| smart00320 | 40 | smart00320, WD40, WD40 repeats | 1e-05 | |
| pfam08513 | 27 | pfam08513, LisH, LisH | 1e-05 | |
| pfam00400 | 39 | pfam00400, WD40, WD domain, G-beta repeat | 2e-05 | |
| PTZ00421 | 493 | PTZ00421, PTZ00421, coronin; Provisional | 3e-05 | |
| smart00320 | 40 | smart00320, WD40, WD40 repeats | 1e-04 | |
| pfam00400 | 39 | pfam00400, WD40, WD domain, G-beta repeat | 1e-04 | |
| pfam00400 | 39 | pfam00400, WD40, WD domain, G-beta repeat | 2e-04 | |
| smart00320 | 40 | smart00320, WD40, WD40 repeats | 3e-04 | |
| pfam09770 | 804 | pfam09770, PAT1, Topoisomerase II-associated prote | 4e-04 | |
| pfam13779 | 820 | pfam13779, DUF4175, Domain of unknown function (DU | 4e-04 | |
| pfam00400 | 39 | pfam00400, WD40, WD domain, G-beta repeat | 0.001 | |
| pfam13779 | 820 | pfam13779, DUF4175, Domain of unknown function (DU | 0.001 | |
| smart00667 | 34 | smart00667, LisH, Lissencephaly type-1-like homolo | 0.001 | |
| pfam13779 | 820 | pfam13779, DUF4175, Domain of unknown function (DU | 0.002 | |
| pfam07321 | 152 | pfam07321, YscO, Type III secretion protein YscO | 0.002 | |
| pfam09606 | 768 | pfam09606, Med15, ARC105 or Med15 subunit of Media | 0.002 | |
| pfam09606 | 768 | pfam09606, Med15, ARC105 or Med15 subunit of Media | 0.002 | |
| pfam09606 | 768 | pfam09606, Med15, ARC105 or Med15 subunit of Media | 0.002 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 0.003 | |
| pfam13779 | 820 | pfam13779, DUF4175, Domain of unknown function (DU | 0.003 | |
| smart00320 | 40 | smart00320, WD40, WD40 repeats | 0.004 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 210 bits (537), Expect = 5e-62
Identities = 93/292 (31%), Positives = 146/292 (50%), Gaps = 12/292 (4%)
Query: 551 IPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLS 610
+ T V FSPDGKLLATG D +W E+ + TL+ HT + DV S +
Sbjct: 5 LKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGT 64
Query: 611 RLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSI 670
LA+ S+D+T+R+WD E + +RT TGH++ V S+ F P +L S + I+ W +
Sbjct: 65 YLASGSSDKTIRLWDLETGE-CVRTLTGHTSYVSSVAFSPDGR-ILSSSSRDKTIKVWDV 122
Query: 671 NNGSCAGVFKCQSGATQM-RFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHS 729
G C + + F P + +++ + I + D+ T C L GH +V+S
Sbjct: 123 ETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNS 182
Query: 730 VCWNTSGE-YLASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGC 788
V ++ GE L+S SD +++W + S G+C+ L N +S F P L+
Sbjct: 183 VAFSPDGEKLLSSSSDGTIKLWDL---STGKCLGTLRGHENGVNSVAFSPD--GYLLASG 237
Query: 789 YE--TLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 837
E T+ +W++ + + TLS H V+SLA S +AS S D ++IW
Sbjct: 238 SEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLASGSADGTIRIWD 289
|
Length = 289 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 148 bits (375), Expect = 1e-39
Identities = 83/253 (32%), Positives = 129/253 (50%), Gaps = 14/253 (5%)
Query: 590 KSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFH 649
+ TL+ HT +T V FSP LAT S D T++VWD E + LRT GH+ V +
Sbjct: 2 RRTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGEL-LRTLKGHTGPVRDVAAS 60
Query: 650 PSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAIENY-IS 707
L + + IR W + G C S + + F P GRIL+++ + I
Sbjct: 61 ADGTYLASGSSDKT-IRLWDLETGECVRTLTGHTSYVSSVAFSP-DGRILSSSSRDKTIK 118
Query: 708 ILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSC 766
+ DVET C L+GH + V+SV ++ G ++AS S D +++W + +G C+ L
Sbjct: 119 VWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGK---CVATL-- 173
Query: 767 TGNK--FHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGM 823
TG+ +S F P LL T++LW+++ K L TL H+ V+S+A S +
Sbjct: 174 TGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYL 233
Query: 824 VASASHDKCVKIW 836
+AS S D +++W
Sbjct: 234 LASGSEDGTIRVW 246
|
Length = 289 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 125 bits (315), Expect = 1e-30
Identities = 90/354 (25%), Positives = 142/354 (40%), Gaps = 22/354 (6%)
Query: 497 SAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTS 556
S + +++ ++ SL S S
Sbjct: 13 SKLLKKSELGPSLNSLSLLSLGSSESGILLLALLSDSLVSLPDLSSLLLRGH------ED 66
Query: 557 KVESCHFSPDGKLLATGGHDKKAVLWC--TESFTVKSTLEEHTQWITDVRF-SPSLSRLA 613
+ S FSPDG+LL +G D LW +KS H ++ + SP + +
Sbjct: 67 SITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSIL 126
Query: 614 T--SSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSIN 671
SS D TV++WD P +RT GHS +V SL F P + L + I+ W +
Sbjct: 127 LASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLR 186
Query: 672 NGSCAGVFKCQSG-ATQMRFQPRLGRILAAAIE-NYISILDVET-QVCRLKLQGHKNQVH 728
G + + + F P G ++A+ I + D+ T ++ R L GH + V
Sbjct: 187 TGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSVV 246
Query: 729 SVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIG 787
S ++ G LAS S D +R+W + S S + LS + S F P L
Sbjct: 247 S-SFSPDGSLLASGSSDGTIRLWDLRSSSS--LLRTLSGHSSSVLSVAFSPDGKLLASGS 303
Query: 788 CYETLELWNMTENK---TLTLSAHDKLVSSLAASTVNGMVASA-SHDKCVKIWK 837
T+ LW++ K +LTL H+ VSSL+ S ++ S S D +++W
Sbjct: 304 SDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWD 357
|
Length = 466 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 114 bits (284), Expect = 1e-26
Identities = 62/193 (32%), Positives = 91/193 (47%), Gaps = 3/193 (1%)
Query: 563 FSPDGKLLATGGHDKKAVLWCTESFTVKS-TLEEHTQWITDVRFSPSLSRLATSSADRTV 621
FSPDG LLA+G D LW S + TL H+ + V FSP LA+ S+D TV
Sbjct: 249 FSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTV 308
Query: 622 RVWDTENPD-YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK 680
R+WD E S T GH V SL F P L+ ++ IR W + G +
Sbjct: 309 RLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLE 368
Query: 681 CQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLA 740
S + F P + + + + + + D+ T L GH ++V S+ ++ G+ LA
Sbjct: 369 GHSNVLSVSFSPDGRVVSSGSTDGTVRLWDLSTGSLLRNLDGHTSRVTSLDFSPDGKSLA 428
Query: 741 SVS-DELVRVWSI 752
S S D +R+W +
Sbjct: 429 SGSSDNTIRLWDL 441
|
Length = 466 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 107 bits (270), Expect = 1e-25
Identities = 54/209 (25%), Positives = 95/209 (45%), Gaps = 9/209 (4%)
Query: 632 SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGA-TQMRF 690
RT GH+ V + F P LL + + I+ W + G K +G +
Sbjct: 1 LRRTLKGHTGGVTCVAFSPDG-KLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAA 59
Query: 691 QPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRV 749
+ + + + I + D+ET C L GH + V SV ++ G L+S S D+ ++V
Sbjct: 60 SADGTYLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKV 119
Query: 750 WSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYE-TLELWNMTENKTL-TLSA 807
W + G+C+ L + +S F P + + + T++LW++ K + TL+
Sbjct: 120 WDV---ETGKCLTTLRGHTDWVNSVAFSPD-GTFVASSSQDGTIKLWDLRTGKCVATLTG 175
Query: 808 HDKLVSSLAASTVNGMVASASHDKCVKIW 836
H V+S+A S + S+S D +K+W
Sbjct: 176 HTGEVNSVAFSPDGEKLLSSSSDGTIKLW 204
|
Length = 289 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 99.0 bits (245), Expect = 1e-21
Identities = 78/299 (26%), Positives = 123/299 (41%), Gaps = 50/299 (16%)
Query: 544 TFTEFQLIPASTSKVESCHFSPDGK-LLATGGHDKKAVLW-CTESFTVKSTLEEHTQWIT 601
T + T V S FSPDG L+A+G D LW + ++STL H+ +
Sbjct: 187 TGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSVV 246
Query: 602 DVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDN 661
FSP S LA+ S+D T+R+WD + LRT +GHS++V+S+ F P LL S +
Sbjct: 247 SS-FSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPD-GKLLASGSS 304
Query: 662 NSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQ 721
+ +R W + G + L L+
Sbjct: 305 DGTVRLWDLETGKL---------------------------------------LSSLTLK 325
Query: 722 GHKNQVHSVCWNTSGEYLAS--VSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPT 779
GH+ V S+ ++ G L S D +R+W + +G + + + S F P
Sbjct: 326 GHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLE----GHSNVLSVSFSPD 381
Query: 780 FPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 837
+ T+ LW+++ L L H V+SL S +AS S D +++W
Sbjct: 382 GRVVSSGSTDGTVRLWDLSTGSLLRNLDGHTSRVTSLDFSPDGKSLASGSSDNTIRLWD 440
|
Length = 466 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 76.6 bits (189), Expect = 3e-15
Identities = 31/82 (37%), Positives = 42/82 (51%)
Query: 544 TFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDV 603
T + + V S FSPDG LLA+G D +W + TL HT +T +
Sbjct: 208 TGKCLGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLSGHTNSVTSL 267
Query: 604 RFSPSLSRLATSSADRTVRVWD 625
+SP RLA+ SAD T+R+WD
Sbjct: 268 AWSPDGKRLASGSADGTIRIWD 289
|
Length = 289 |
| >gnl|CDD|197651 smart00320, WD40, WD40 repeats | Back alignment and domain information |
|---|
Score = 53.5 bits (129), Expect = 2e-09
Identities = 17/40 (42%), Positives = 24/40 (60%)
Query: 586 SFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWD 625
S + TL+ HT +T V FSP LA+ S D T+++WD
Sbjct: 1 SGELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40 |
| >gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat | Back alignment and domain information |
|---|
Score = 52.7 bits (127), Expect = 3e-09
Identities = 19/39 (48%), Positives = 24/39 (61%)
Query: 587 FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWD 625
+ TL+ HT +T V FSP + LA+ S D TVRVWD
Sbjct: 1 GKLLRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVWD 39
|
Length = 39 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 56.3 bits (134), Expect = 4e-08
Identities = 28/78 (35%), Positives = 45/78 (57%)
Query: 556 SKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATS 615
S V S FSPDG+++++G D LW + ++ L+ HT +T + FSP LA+
Sbjct: 371 SNVLSVSFSPDGRVVSSGSTDGTVRLWDLSTGSLLRNLDGHTSRVTSLDFSPDGKSLASG 430
Query: 616 SADRTVRVWDTENPDYSL 633
S+D T+R+WD + S+
Sbjct: 431 SSDNTIRLWDLKTSLKSV 448
|
Length = 466 |
| >gnl|CDD|240412 PTZ00420, PTZ00420, coronin; Provisional | Back alignment and domain information |
|---|
Score = 51.1 bits (122), Expect = 2e-06
Identities = 28/88 (31%), Positives = 46/88 (52%), Gaps = 8/88 (9%)
Query: 593 LEEHTQWITDVRFSPSLSR-LATSSADRTVRVWDTENPDYSLR-------TFTGHSTTVM 644
L+ HT I D++F+P S LA+ S D T+RVW+ + D S++ GH +
Sbjct: 70 LKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKIS 129
Query: 645 SLDFHPSKEDLLCSCDNNSEIRYWSINN 672
+D++P ++CS +S + W I N
Sbjct: 130 IIDWNPMNYYIMCSSGFDSFVNIWDIEN 157
|
Length = 568 |
| >gnl|CDD|177776 PLN00181, PLN00181, protein SPA1-RELATED; Provisional | Back alignment and domain information |
|---|
Score = 50.5 bits (120), Expect = 3e-06
Identities = 52/223 (23%), Positives = 96/223 (43%), Gaps = 27/223 (12%)
Query: 554 STSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQ--------------W 599
S++ V + F DG+ AT G +KK ++ ES +K + H W
Sbjct: 482 SSNLVCAIGFDRDGEFFATAGVNKKIKIFECESI-IKDGRDIHYPVVELASRSKLSGICW 540
Query: 600 ITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSC 659
+ ++ S++A+S+ + V+VWD + H V S+D+ + LL S
Sbjct: 541 NSYIK-----SQVASSNFEGVVQVWDVARSQL-VTEMKEHEKRVWSIDYSSADPTLLASG 594
Query: 660 DNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIEN----YISILDVETQV 715
++ ++ WSIN G G K ++ ++F GR LA + Y + + + +
Sbjct: 595 SDDGSVKLWSINQGVSIGTIKTKANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPL 654
Query: 716 CRLKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKG 758
C + GH V V + S ++S +D +++W + G
Sbjct: 655 C--TMIGHSKTVSYVRFVDSSTLVSSSTDNTLKLWDLSMSISG 695
|
Length = 793 |
| >gnl|CDD|197651 smart00320, WD40, WD40 repeats | Back alignment and domain information |
|---|
Score = 42.7 bits (101), Expect = 1e-05
Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Query: 713 TQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWS 751
+ L+GH V SV ++ G+YLAS S D +++W
Sbjct: 1 SGELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40 |
| >gnl|CDD|149534 pfam08513, LisH, LisH | Back alignment and domain information |
|---|
Score = 42.3 bits (101), Expect = 1e-05
Identities = 11/27 (40%), Positives = 16/27 (59%)
Query: 10 KMLDVYIYDYLLKRKLHASAKAFQTEG 36
+ L+ IYDYL+K +A+AF E
Sbjct: 1 EELNRLIYDYLVKSGYKETAEAFAKES 27
|
The LisH (lis homology) domain mediates protein dimerisation and tetramerisation. The LisH domain is found in Sif2, a component of the Set3 complex which is responsible for repressing meiotic genes. It has been shown that the LisH domain helps mediate interaction with components of the Set3 complex. Length = 27 |
| >gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat | Back alignment and domain information |
|---|
Score = 42.0 bits (99), Expect = 2e-05
Identities = 16/38 (42%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
Query: 715 VCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWS 751
L+GH V SV ++ G LAS S D VRVW
Sbjct: 2 KLLRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVWD 39
|
Length = 39 |
| >gnl|CDD|173611 PTZ00421, PTZ00421, coronin; Provisional | Back alignment and domain information |
|---|
Score = 47.2 bits (112), Expect = 3e-05
Identities = 28/91 (30%), Positives = 41/91 (45%), Gaps = 7/91 (7%)
Query: 600 ITDVRFSP-SLSRLATSSADRTVRVWD------TENPDYSLRTFTGHSTTVMSLDFHPSK 652
I DV F+P +L T+S D T+ W T+N + GH+ V + FHPS
Sbjct: 78 IIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSA 137
Query: 653 EDLLCSCDNNSEIRYWSINNGSCAGVFKCQS 683
++L S + + W + G V KC S
Sbjct: 138 MNVLASAGADMVVNVWDVERGKAVEVIKCHS 168
|
Length = 493 |
| >gnl|CDD|197651 smart00320, WD40, WD40 repeats | Back alignment and domain information |
|---|
Score = 39.6 bits (93), Expect = 1e-04
Identities = 15/39 (38%), Positives = 19/39 (48%)
Query: 544 TFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLW 582
+ + + T V S FSPDGK LA+G D LW
Sbjct: 1 SGELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLW 39
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40 |
| >gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat | Back alignment and domain information |
|---|
Score = 39.6 bits (93), Expect = 1e-04
Identities = 13/39 (33%), Positives = 19/39 (48%)
Query: 799 ENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 837
TL H V+S+A S ++AS S D V++W
Sbjct: 1 GKLLRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVWD 39
|
Length = 39 |
| >gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat | Back alignment and domain information |
|---|
Score = 39.3 bits (92), Expect = 2e-04
Identities = 14/32 (43%), Positives = 17/32 (53%)
Query: 551 IPASTSKVESCHFSPDGKLLATGGHDKKAVLW 582
+ T V S FSPDG LLA+G D +W
Sbjct: 7 LKGHTGPVTSVAFSPDGNLLASGSDDGTVRVW 38
|
Length = 39 |
| >gnl|CDD|197651 smart00320, WD40, WD40 repeats | Back alignment and domain information |
|---|
Score = 38.8 bits (91), Expect = 3e-04
Identities = 13/40 (32%), Positives = 19/40 (47%)
Query: 798 TENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 837
+ TL H V+S+A S +AS S D +K+W
Sbjct: 1 SGELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40 |
| >gnl|CDD|220392 pfam09770, PAT1, Topoisomerase II-associated protein PAT1 | Back alignment and domain information |
|---|
Score = 43.6 bits (103), Expect = 4e-04
Identities = 15/51 (29%), Positives = 18/51 (35%)
Query: 81 SQVIKAREQQQQQQQQHQKPQQHQQMQVQQLLLQRHAQQQQQQQRRDSTQH 131
SQ Q QQ QQ Q + Q + Q QQQQ+ Q
Sbjct: 224 SQAPAQPPLPPQLPQQPPPLQQPQFPGLSQQMPPPPPQPPQQQQQPPQPQA 274
|
Members of this family are necessary for accurate chromosome transmission during cell division. Length = 804 |
| >gnl|CDD|222374 pfam13779, DUF4175, Domain of unknown function (DUF4175) | Back alignment and domain information |
|---|
Score = 43.7 bits (104), Expect = 4e-04
Identities = 24/82 (29%), Positives = 27/82 (32%), Gaps = 8/82 (9%)
Query: 88 EQQQQQQQQHQKPQQHQQMQVQQLLLQRHAQQQQQQQRRDSTQHLNDTGDDLRPGFAKAF 147
+Q Q Q Q Q QQ QQ Q QQ Q Q Q + Q L D R G
Sbjct: 625 QQGQGGQGQGQPGQQGQQGQGQQQGQQGQGGQGGQGSLAERQQALRDELGRQRGGLPGMG 684
Query: 148 TTKMYEDRLKKLPFQRDSLDDA 169
RD+L A
Sbjct: 685 GEAGEAA--------RDALGRA 698
|
Length = 820 |
| >gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat | Back alignment and domain information |
|---|
Score = 36.9 bits (86), Expect = 0.001
Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Query: 633 LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWS 669
LRT GH+ V S+ F P +LL S ++ +R W
Sbjct: 4 LRTLKGHTGPVTSVAFSPD-GNLLASGSDDGTVRVWD 39
|
Length = 39 |
| >gnl|CDD|222374 pfam13779, DUF4175, Domain of unknown function (DUF4175) | Back alignment and domain information |
|---|
Score = 42.6 bits (101), Expect = 0.001
Identities = 20/66 (30%), Positives = 27/66 (40%), Gaps = 6/66 (9%)
Query: 87 REQQQQQQQQHQKPQQHQQMQVQQLLLQRHAQQQQ------QQQRRDSTQHLNDTGDDLR 140
+ Q QQ QQ Q QQ QQ Q Q A++QQ +QR + G+ R
Sbjct: 633 QGQPGQQGQQGQGQQQGQQGQGGQGGQGSLAERQQALRDELGRQRGGLPGMGGEAGEAAR 692
Query: 141 PGFAKA 146
+A
Sbjct: 693 DALGRA 698
|
Length = 820 |
| >gnl|CDD|128913 smart00667, LisH, Lissencephaly type-1-like homology motif | Back alignment and domain information |
|---|
Score = 37.0 bits (87), Expect = 0.001
Identities = 9/30 (30%), Positives = 15/30 (50%)
Query: 10 KMLDVYIYDYLLKRKLHASAKAFQTEGKVS 39
L+ I +YLL+ +A+ Q E +S
Sbjct: 4 SELNRLILEYLLRNGYEETAETLQKESGLS 33
|
Alpha-helical motif present in Lis1, treacle, Nopp140, some katanin p60 subunits, muskelin, tonneau, LEUNIG and numerous WD40 repeat-containing proteins. It is suggested that LisH motifs contribute to the regulation of microtubule dynamics, either by mediating dimerisation, or else by binding cytoplasmic dynein heavy chain or microtubules directly. Length = 34 |
| >gnl|CDD|222374 pfam13779, DUF4175, Domain of unknown function (DUF4175) | Back alignment and domain information |
|---|
Score = 41.0 bits (97), Expect = 0.002
Identities = 11/44 (25%), Positives = 16/44 (36%)
Query: 87 REQQQQQQQQHQKPQQHQQMQVQQLLLQRHAQQQQQQQRRDSTQ 130
R+ Q+Q Q + Q Q Q QQ Q Q++
Sbjct: 609 RDLQEQFNAQRGEQQGQQGQGGQGQGQPGQQGQQGQGQQQGQQG 652
|
Length = 820 |
| >gnl|CDD|148750 pfam07321, YscO, Type III secretion protein YscO | Back alignment and domain information |
|---|
Score = 39.3 bits (92), Expect = 0.002
Identities = 16/65 (24%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
Query: 62 IFIARTNEKHSESAASYIESQVIKAREQQQQQQQQHQKPQQHQQMQVQQLLLQRHAQQQQ 121
+ + R NE E + + ++ R++ +Q +QQ Q+ ++ Q + +L Q A+ Q
Sbjct: 76 VGLLRENEASLEQQLAEAKQRLEAERQRLRQARQQLQEARK-AQEKFAELARQEQAEAQA 134
Query: 122 QQQRR 126
Q+Q
Sbjct: 135 QRQYL 139
|
This family contains the bacterial type III secretion protein YscO, which is approximately 150 residues long. YscO has been shown to be required for high-level expression and secretion of the anti-host proteins V antigen and Yops in Yersinia pestis. Length = 152 |
| >gnl|CDD|220309 pfam09606, Med15, ARC105 or Med15 subunit of Mediator complex non-fungal | Back alignment and domain information |
|---|
Score = 41.5 bits (97), Expect = 0.002
Identities = 46/228 (20%), Positives = 66/228 (28%), Gaps = 17/228 (7%)
Query: 89 QQQQQQQQHQKPQQHQQMQVQQLLLQRHAQQQQQQQRRDSTQHLNDTGDDLRPGFAKAFT 148
Q QQQ Q QQ QQL Q+ Q QQQ D+ + + G
Sbjct: 208 GQMQQQGQPGGQQQQNPQMQQQLQNQQQQQMDQQQGPADAQAQMG----QQQQGQGGMQP 263
Query: 149 TKMYEDRLKKLPFQRDSLDDATIKP--RLSDNMTQLLDPNHATLLKAAAIGSQPSGQTLH 206
+M +++ Q+ L + M Q+ + Q G
Sbjct: 264 QQMQGGQMQVPMQQQPPQQQPQQSQLGMLPNQMQQMPGGGQGGPGQPMGPPPQRPGAVPQ 323
Query: 207 GTHGVSQQVQSRSQQPPLSTQEVKTEMNPTMNPRAAGSEGSLIGVHG-----SNQGAGNV 261
G V Q V S QQ + + G+ H G +
Sbjct: 324 GGQAVQQGVMSAGQQQLKQMKLRNMRGQQQTQQQQQQQGGNHPAAHQQQMNQQVGQGGQM 383
Query: 262 TLKGWPLTGLDQFRSGLLQQQK------SLTQPYNQLQLQQLMLQAQQ 303
G+ +Q G Q+ S P Q+Q Q M Q Q
Sbjct: 384 VALGYLNIQGNQGGLGANPMQQGQPGMMSSPSPVPQVQTNQSMPQPPQ 431
|
The approx. 70 residue Med15 domain of the ARC-Mediator co-activator is a three-helix bundle with marked similarity to the KIX domain. The sterol regulatory element binding protein (SREBP) family of transcription activators use the ARC105 subunit to activate target genes in the regulation of cholesterol and fatty acid homeostasis. In addition, Med15 is a critical transducer of gene activation signals that control early metazoan development. Length = 768 |
| >gnl|CDD|220309 pfam09606, Med15, ARC105 or Med15 subunit of Mediator complex non-fungal | Back alignment and domain information |
|---|
Score = 41.5 bits (97), Expect = 0.002
Identities = 59/309 (19%), Positives = 78/309 (25%), Gaps = 38/309 (12%)
Query: 193 AAAIGSQPSGQTLHGTHGVSQQVQSRSQQPPLSTQEVKTEMNPTMNPRAAGSEGS----- 247
+ QP GQ S Q QS+ Q MN G G
Sbjct: 136 SRVGTMQPGGQAGGMMQQSSGQPQSQQPNQMGPQQGQAQGQAGGMNQGQQGPVGQQQPPQ 195
Query: 248 ----LIGVHGSNQGAGNVTLKGWPLTGLDQFRSGLLQQQKSLT-----------QPYNQL 292
+ G G Q + L QQ+ Q Q
Sbjct: 196 MGQPGMPGGGGQGQMQQQGQPGGQQQQNPQMQQQLQNQQQQQMDQQQGPADAQAQMGQQQ 255
Query: 293 QLQQLMLQAQQNLAS--------PSANDLESRKLRMLHNSRNMGLARDGSSNSVGDLVST 344
Q Q M Q P + +L ML N M G G +
Sbjct: 256 QGQGGMQPQQMQGGQMQVPMQQQPPQQQPQQSQLGMLPNQ--MQQMPGGGQGGPGQPMGP 313
Query: 345 VGSAMQIISPGLPRGDNDLL------IKIQQQQQQLQHYSHHPLSSQQSQNSNPLLQQQD 398
+ G ++ +K + + QQ N QQQ
Sbjct: 314 PPQRPGAVPQGGQAVQQGVMSAGQQQLKQMKLRNMRGQQQTQQQQQQQGGNHPAAHQQQM 373
Query: 399 KILAGGSMTMDGSMSNTFQGN-DQASKNQIGRKRKQAVSSSGPANSSGTANTPGPTPSSP 457
G M QGN N + + + +SS P T + P P P
Sbjct: 374 NQQVGQGGQMVALGYLNIQGNQGGLGANPMQQGQPGMMSSPSPVPQVQTNQSM-PQPPQP 432
Query: 458 SSPSTHTPG 466
S PS PG
Sbjct: 433 SVPSPGGPG 441
|
The approx. 70 residue Med15 domain of the ARC-Mediator co-activator is a three-helix bundle with marked similarity to the KIX domain. The sterol regulatory element binding protein (SREBP) family of transcription activators use the ARC105 subunit to activate target genes in the regulation of cholesterol and fatty acid homeostasis. In addition, Med15 is a critical transducer of gene activation signals that control early metazoan development. Length = 768 |
| >gnl|CDD|220309 pfam09606, Med15, ARC105 or Med15 subunit of Mediator complex non-fungal | Back alignment and domain information |
|---|
Score = 41.5 bits (97), Expect = 0.002
Identities = 47/223 (21%), Positives = 65/223 (29%), Gaps = 17/223 (7%)
Query: 89 QQQQQQQQHQKPQQHQQMQVQQLLLQRHAQQQQQQQRRDSTQHLNDTGDDLRPGFAKAFT 148
QQ Q Q Q+P Q Q Q Q Q QQ Q G PG
Sbjct: 152 QQSSGQPQSQQPNQ-MGPQQGQAQGQ-AGGMNQGQQGPVGQQQPPQMGQPGMPGGGG--- 206
Query: 149 TKMYEDRLKKLPFQRDSLDDATIKPRLSDNMTQLLDPNHATLLKAAAIGSQP---SGQTL 205
++ + ++ +L + Q +D A +G Q G
Sbjct: 207 ---QGQMQQQGQPGGQQQQNPQMQQQLQNQQQQQMDQQQGPADAQAQMGQQQQGQGGMQP 263
Query: 206 HGTHGVSQQVQSRSQQPPLSTQEVKTEMNPT----MNPRAAGSEGSLIGVHGSNQGAGNV 261
G QV + Q P Q+ + M P M G G +G GA
Sbjct: 264 QQMQGGQMQVPMQQQPPQQQPQQSQLGMLPNQMQQMPGGGQGGPGQPMGPPPQRPGAVPQ 323
Query: 262 TLKGWPLTGLDQFRSGLLQQQKSLTQPYNQLQLQQLMLQAQQN 304
+ + + L Q + L Q Q QQ Q N
Sbjct: 324 GGQAVQQGVMSAGQQQLKQMK--LRNMRGQQQTQQQQQQQGGN 364
|
The approx. 70 residue Med15 domain of the ARC-Mediator co-activator is a three-helix bundle with marked similarity to the KIX domain. The sterol regulatory element binding protein (SREBP) family of transcription activators use the ARC105 subunit to activate target genes in the regulation of cholesterol and fatty acid homeostasis. In addition, Med15 is a critical transducer of gene activation signals that control early metazoan development. Length = 768 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 40.0 bits (94), Expect = 0.003
Identities = 11/34 (32%), Positives = 18/34 (52%)
Query: 804 TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 837
TL H V+ +A S ++A+ S D +K+W
Sbjct: 4 TLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWD 37
|
Length = 289 |
| >gnl|CDD|222374 pfam13779, DUF4175, Domain of unknown function (DUF4175) | Back alignment and domain information |
|---|
Score = 41.0 bits (97), Expect = 0.003
Identities = 14/44 (31%), Positives = 18/44 (40%)
Query: 87 REQQQQQQQQHQKPQQHQQMQVQQLLLQRHAQQQQQQQRRDSTQ 130
Q+ +QQ Q + Q Q QQ + QQ QQ Q Q
Sbjct: 616 NAQRGEQQGQQGQGGQGQGQPGQQGQQGQGQQQGQQGQGGQGGQ 659
|
Length = 820 |
| >gnl|CDD|197651 smart00320, WD40, WD40 repeats | Back alignment and domain information |
|---|
Score = 35.4 bits (82), Expect = 0.004
Identities = 12/37 (32%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
Query: 633 LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWS 669
L+T GH+ V S+ F P L S ++ I+ W
Sbjct: 5 LKTLKGHTGPVTSVAFSPD-GKYLASGSDDGTIKLWD 40
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 837 | |||
| KOG0271 | 480 | consensus Notchless-like WD40 repeat-containing pr | 100.0 | |
| KOG0271 | 480 | consensus Notchless-like WD40 repeat-containing pr | 100.0 | |
| KOG0272 | 459 | consensus U4/U6 small nuclear ribonucleoprotein Pr | 100.0 | |
| KOG0286 | 343 | consensus G-protein beta subunit [General function | 100.0 | |
| KOG0272 | 459 | consensus U4/U6 small nuclear ribonucleoprotein Pr | 100.0 | |
| KOG0265 | 338 | consensus U5 snRNP-specific protein-like factor an | 100.0 | |
| KOG0318 | 603 | consensus WD40 repeat stress protein/actin interac | 100.0 | |
| KOG0279 | 315 | consensus G protein beta subunit-like protein [Sig | 100.0 | |
| KOG0266 | 456 | consensus WD40 repeat-containing protein [General | 100.0 | |
| cd00200 | 289 | WD40 WD40 domain, found in a number of eukaryotic | 100.0 | |
| KOG0315 | 311 | consensus G-protein beta subunit-like protein (con | 100.0 | |
| KOG0285 | 460 | consensus Pleiotropic regulator 1 [RNA processing | 100.0 | |
| KOG0295 | 406 | consensus WD40 repeat-containing protein [Function | 100.0 | |
| KOG0318 | 603 | consensus WD40 repeat stress protein/actin interac | 100.0 | |
| KOG0315 | 311 | consensus G-protein beta subunit-like protein (con | 100.0 | |
| KOG0284 | 464 | consensus Polyadenylation factor I complex, subuni | 100.0 | |
| KOG0273 | 524 | consensus Beta-transducin family (WD-40 repeat) pr | 100.0 | |
| KOG0279 | 315 | consensus G protein beta subunit-like protein [Sig | 100.0 | |
| KOG0645 | 312 | consensus WD40 repeat protein [General function pr | 100.0 | |
| KOG0273 | 524 | consensus Beta-transducin family (WD-40 repeat) pr | 100.0 | |
| KOG0293 | 519 | consensus WD40 repeat-containing protein [Function | 100.0 | |
| KOG0282 | 503 | consensus mRNA splicing factor [Function unknown] | 100.0 | |
| KOG0291 | 893 | consensus WD40-repeat-containing subunit of the 18 | 100.0 | |
| KOG0291 | 893 | consensus WD40-repeat-containing subunit of the 18 | 100.0 | |
| KOG0296 | 399 | consensus Angio-associated migratory cell protein | 100.0 | |
| PLN00181 | 793 | protein SPA1-RELATED; Provisional | 100.0 | |
| KOG0286 | 343 | consensus G-protein beta subunit [General function | 100.0 | |
| KOG0263 | 707 | consensus Transcription initiation factor TFIID, s | 100.0 | |
| KOG0319 | 775 | consensus WD40-repeat-containing subunit of the 18 | 100.0 | |
| KOG0263 | 707 | consensus Transcription initiation factor TFIID, s | 100.0 | |
| KOG0319 | 775 | consensus WD40-repeat-containing subunit of the 18 | 99.98 | |
| KOG0284 | 464 | consensus Polyadenylation factor I complex, subuni | 99.97 | |
| KOG0295 | 406 | consensus WD40 repeat-containing protein [Function | 99.97 | |
| KOG0316 | 307 | consensus Conserved WD40 repeat-containing protein | 99.97 | |
| KOG0306 | 888 | consensus WD40-repeat-containing subunit of the 18 | 99.97 | |
| KOG0296 | 399 | consensus Angio-associated migratory cell protein | 99.97 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 99.97 | |
| KOG0306 | 888 | consensus WD40-repeat-containing subunit of the 18 | 99.97 | |
| KOG0281 | 499 | consensus Beta-TrCP (transducin repeats containing | 99.97 | |
| KOG0643 | 327 | consensus Translation initiation factor 3, subunit | 99.97 | |
| cd00200 | 289 | WD40 WD40 domain, found in a number of eukaryotic | 99.97 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 99.97 | |
| KOG1407 | 313 | consensus WD40 repeat protein [Function unknown] | 99.97 | |
| KOG0266 | 456 | consensus WD40 repeat-containing protein [General | 99.97 | |
| KOG0278 | 334 | consensus Serine/threonine kinase receptor-associa | 99.97 | |
| KOG0275 | 508 | consensus Conserved WD40 repeat-containing protein | 99.97 | |
| KOG0281 | 499 | consensus Beta-TrCP (transducin repeats containing | 99.97 | |
| KOG0288 | 459 | consensus WD40 repeat protein TipD [General functi | 99.96 | |
| KOG0285 | 460 | consensus Pleiotropic regulator 1 [RNA processing | 99.96 | |
| KOG1446 | 311 | consensus Histone H3 (Lys4) methyltransferase comp | 99.96 | |
| KOG0292 | 1202 | consensus Vesicle coat complex COPI, alpha subunit | 99.96 | |
| KOG0645 | 312 | consensus WD40 repeat protein [General function pr | 99.96 | |
| KOG0265 | 338 | consensus U5 snRNP-specific protein-like factor an | 99.96 | |
| KOG0313 | 423 | consensus Microtubule binding protein YTM1 (contai | 99.96 | |
| KOG0313 | 423 | consensus Microtubule binding protein YTM1 (contai | 99.96 | |
| KOG0277 | 311 | consensus Peroxisomal targeting signal type 2 rece | 99.96 | |
| PLN00181 | 793 | protein SPA1-RELATED; Provisional | 99.96 | |
| KOG0268 | 433 | consensus Sof1-like rRNA processing protein (conta | 99.96 | |
| KOG0772 | 641 | consensus Uncharacterized conserved protein, conta | 99.96 | |
| KOG0283 | 712 | consensus WD40 repeat-containing protein [Function | 99.96 | |
| PTZ00420 | 568 | coronin; Provisional | 99.96 | |
| KOG0640 | 430 | consensus mRNA cleavage stimulating factor complex | 99.96 | |
| KOG0310 | 487 | consensus Conserved WD40 repeat-containing protein | 99.95 | |
| KOG0282 | 503 | consensus mRNA splicing factor [Function unknown] | 99.95 | |
| KOG0316 | 307 | consensus Conserved WD40 repeat-containing protein | 99.95 | |
| KOG0278 | 334 | consensus Serine/threonine kinase receptor-associa | 99.95 | |
| KOG0274 | 537 | consensus Cdc4 and related F-box and WD-40 protein | 99.95 | |
| KOG0293 | 519 | consensus WD40 repeat-containing protein [Function | 99.95 | |
| KOG0289 | 506 | consensus mRNA splicing factor [General function p | 99.95 | |
| PTZ00421 | 493 | coronin; Provisional | 99.95 | |
| KOG0305 | 484 | consensus Anaphase promoting complex, Cdc20, Cdh1, | 99.95 | |
| KOG0973 | 942 | consensus Histone transcription regulator HIRA, WD | 99.95 | |
| KOG0283 | 712 | consensus WD40 repeat-containing protein [Function | 99.95 | |
| KOG0647 | 347 | consensus mRNA export protein (contains WD40 repea | 99.95 | |
| KOG0294 | 362 | consensus WD40 repeat-containing protein [Function | 99.95 | |
| KOG0292 | 1202 | consensus Vesicle coat complex COPI, alpha subunit | 99.95 | |
| KOG0275 | 508 | consensus Conserved WD40 repeat-containing protein | 99.95 | |
| KOG0300 | 481 | consensus WD40 repeat-containing protein [Function | 99.94 | |
| KOG0310 | 487 | consensus Conserved WD40 repeat-containing protein | 99.94 | |
| KOG0641 | 350 | consensus WD40 repeat protein [General function pr | 99.94 | |
| KOG0274 | 537 | consensus Cdc4 and related F-box and WD-40 protein | 99.94 | |
| KOG0308 | 735 | consensus Conserved WD40 repeat-containing protein | 99.94 | |
| KOG1407 | 313 | consensus WD40 repeat protein [Function unknown] | 99.94 | |
| KOG0288 | 459 | consensus WD40 repeat protein TipD [General functi | 99.94 | |
| KOG0973 | 942 | consensus Histone transcription regulator HIRA, WD | 99.94 | |
| KOG0641 | 350 | consensus WD40 repeat protein [General function pr | 99.94 | |
| KOG0277 | 311 | consensus Peroxisomal targeting signal type 2 rece | 99.94 | |
| PTZ00421 | 493 | coronin; Provisional | 99.94 | |
| KOG1408 | 1080 | consensus WD40 repeat protein [Function unknown] | 99.94 | |
| KOG1036 | 323 | consensus Mitotic spindle checkpoint protein BUB3, | 99.93 | |
| TIGR03866 | 300 | PQQ_ABC_repeats PQQ-dependent catabolism-associate | 99.93 | |
| KOG2096 | 420 | consensus WD40 repeat protein [General function pr | 99.93 | |
| KOG0299 | 479 | consensus U3 snoRNP-associated protein (contains W | 99.93 | |
| KOG0640 | 430 | consensus mRNA cleavage stimulating factor complex | 99.93 | |
| KOG1539 | 910 | consensus WD repeat protein [General function pred | 99.93 | |
| KOG0308 | 735 | consensus Conserved WD40 repeat-containing protein | 99.93 | |
| KOG2055 | 514 | consensus WD40 repeat protein [General function pr | 99.92 | |
| KOG0639 | 705 | consensus Transducin-like enhancer of split protei | 99.92 | |
| KOG0301 | 745 | consensus Phospholipase A2-activating protein (con | 99.92 | |
| KOG0299 | 479 | consensus U3 snoRNP-associated protein (contains W | 99.92 | |
| TIGR03866 | 300 | PQQ_ABC_repeats PQQ-dependent catabolism-associate | 99.92 | |
| KOG0305 | 484 | consensus Anaphase promoting complex, Cdc20, Cdh1, | 99.92 | |
| KOG0643 | 327 | consensus Translation initiation factor 3, subunit | 99.92 | |
| PTZ00420 | 568 | coronin; Provisional | 99.92 | |
| KOG0772 | 641 | consensus Uncharacterized conserved protein, conta | 99.92 | |
| KOG1273 | 405 | consensus WD40 repeat protein [General function pr | 99.92 | |
| KOG0294 | 362 | consensus WD40 repeat-containing protein [Function | 99.92 | |
| KOG0301 | 745 | consensus Phospholipase A2-activating protein (con | 99.92 | |
| KOG0268 | 433 | consensus Sof1-like rRNA processing protein (conta | 99.91 | |
| KOG0647 | 347 | consensus mRNA export protein (contains WD40 repea | 99.91 | |
| KOG1446 | 311 | consensus Histone H3 (Lys4) methyltransferase comp | 99.91 | |
| KOG0650 | 733 | consensus WD40 repeat nucleolar protein Bop1, invo | 99.91 | |
| KOG1332 | 299 | consensus Vesicle coat complex COPII, subunit SEC1 | 99.91 | |
| KOG1063 | 764 | consensus RNA polymerase II elongator complex, sub | 99.91 | |
| KOG1408 | 1080 | consensus WD40 repeat protein [Function unknown] | 99.91 | |
| KOG0289 | 506 | consensus mRNA splicing factor [General function p | 99.91 | |
| KOG0269 | 839 | consensus WD40 repeat-containing protein [Function | 99.9 | |
| KOG0646 | 476 | consensus WD40 repeat protein [General function pr | 99.9 | |
| KOG0264 | 422 | consensus Nucleosome remodeling factor, subunit CA | 99.9 | |
| KOG1332 | 299 | consensus Vesicle coat complex COPII, subunit SEC1 | 99.89 | |
| KOG0264 | 422 | consensus Nucleosome remodeling factor, subunit CA | 99.89 | |
| KOG4283 | 397 | consensus Transcription-coupled repair protein CSA | 99.89 | |
| KOG1274 | 933 | consensus WD40 repeat protein [General function pr | 99.89 | |
| KOG2106 | 626 | consensus Uncharacterized conserved protein, conta | 99.89 | |
| KOG0321 | 720 | consensus WD40 repeat-containing protein L2DTL [Fu | 99.89 | |
| KOG0639 | 705 | consensus Transducin-like enhancer of split protei | 99.88 | |
| KOG1274 | 933 | consensus WD40 repeat protein [General function pr | 99.88 | |
| KOG2048 | 691 | consensus WD40 repeat protein [General function pr | 99.88 | |
| KOG2445 | 361 | consensus Nuclear pore complex component (sc Seh1) | 99.88 | |
| KOG2055 | 514 | consensus WD40 repeat protein [General function pr | 99.88 | |
| KOG0267 | 825 | consensus Microtubule severing protein katanin p80 | 99.88 | |
| KOG2106 | 626 | consensus Uncharacterized conserved protein, conta | 99.88 | |
| KOG0267 | 825 | consensus Microtubule severing protein katanin p80 | 99.88 | |
| KOG1539 | 910 | consensus WD repeat protein [General function pred | 99.87 | |
| KOG1036 | 323 | consensus Mitotic spindle checkpoint protein BUB3, | 99.87 | |
| KOG0646 | 476 | consensus WD40 repeat protein [General function pr | 99.87 | |
| KOG1063 | 764 | consensus RNA polymerase II elongator complex, sub | 99.86 | |
| KOG0300 | 481 | consensus WD40 repeat-containing protein [Function | 99.86 | |
| KOG4283 | 397 | consensus Transcription-coupled repair protein CSA | 99.86 | |
| KOG1034 | 385 | consensus Transcriptional repressor EED/ESC/FIE, r | 99.85 | |
| KOG4328 | 498 | consensus WD40 protein [Function unknown] | 99.85 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 99.85 | |
| KOG0269 | 839 | consensus WD40 repeat-containing protein [Function | 99.85 | |
| KOG0302 | 440 | consensus Ribosome Assembly protein [General funct | 99.85 | |
| KOG2919 | 406 | consensus Guanine nucleotide-binding protein [Gene | 99.84 | |
| KOG0321 | 720 | consensus WD40 repeat-containing protein L2DTL [Fu | 99.84 | |
| COG2319 | 466 | FOG: WD40 repeat [General function prediction only | 99.84 | |
| KOG2048 | 691 | consensus WD40 repeat protein [General function pr | 99.84 | |
| KOG4378 | 673 | consensus Nuclear protein COP1 [Signal transductio | 99.84 | |
| COG2319 | 466 | FOG: WD40 repeat [General function prediction only | 99.83 | |
| KOG1009 | 434 | consensus Chromatin assembly complex 1 subunit B/C | 99.83 | |
| KOG0270 | 463 | consensus WD40 repeat-containing protein [Function | 99.83 | |
| KOG0307 | 1049 | consensus Vesicle coat complex COPII, subunit SEC3 | 99.83 | |
| KOG1273 | 405 | consensus WD40 repeat protein [General function pr | 99.83 | |
| KOG0307 | 1049 | consensus Vesicle coat complex COPII, subunit SEC3 | 99.83 | |
| KOG4328 | 498 | consensus WD40 protein [Function unknown] | 99.83 | |
| KOG1445 | 1012 | consensus Tumor-specific antigen (contains WD repe | 99.82 | |
| KOG0650 | 733 | consensus WD40 repeat nucleolar protein Bop1, invo | 99.82 | |
| KOG2096 | 420 | consensus WD40 repeat protein [General function pr | 99.82 | |
| KOG0302 | 440 | consensus Ribosome Assembly protein [General funct | 99.81 | |
| KOG4378 | 673 | consensus Nuclear protein COP1 [Signal transductio | 99.81 | |
| KOG0270 | 463 | consensus WD40 repeat-containing protein [Function | 99.8 | |
| KOG0322 | 323 | consensus G-protein beta subunit-like protein GNB1 | 99.8 | |
| KOG4227 | 609 | consensus WD40 repeat protein [General function pr | 99.8 | |
| KOG0303 | 472 | consensus Actin-binding protein Coronin, contains | 99.79 | |
| PRK11028 | 330 | 6-phosphogluconolactonase; Provisional | 99.79 | |
| PRK11028 | 330 | 6-phosphogluconolactonase; Provisional | 99.79 | |
| KOG0642 | 577 | consensus Cell-cycle nuclear protein, contains WD- | 99.78 | |
| KOG1188 | 376 | consensus WD40 repeat protein [General function pr | 99.77 | |
| KOG0644 | 1113 | consensus Uncharacterized conserved protein, conta | 99.76 | |
| KOG2445 | 361 | consensus Nuclear pore complex component (sc Seh1) | 99.76 | |
| KOG1334 | 559 | consensus WD40 repeat protein [General function pr | 99.75 | |
| KOG1517 | 1387 | consensus Guanine nucleotide binding protein MIP1 | 99.75 | |
| KOG2919 | 406 | consensus Guanine nucleotide-binding protein [Gene | 99.74 | |
| KOG0642 | 577 | consensus Cell-cycle nuclear protein, contains WD- | 99.73 | |
| KOG0290 | 364 | consensus Conserved WD40 repeat-containing protein | 99.73 | |
| KOG1007 | 370 | consensus WD repeat protein TSSC1, WD repeat super | 99.73 | |
| KOG1034 | 385 | consensus Transcriptional repressor EED/ESC/FIE, r | 99.72 | |
| KOG1240 | 1431 | consensus Protein kinase containing WD40 repeats [ | 99.72 | |
| KOG0303 | 472 | consensus Actin-binding protein Coronin, contains | 99.72 | |
| KOG1587 | 555 | consensus Cytoplasmic dynein intermediate chain [C | 99.72 | |
| KOG0649 | 325 | consensus WD40 repeat protein [General function pr | 99.72 | |
| KOG1963 | 792 | consensus WD40 repeat protein [General function pr | 99.71 | |
| KOG1188 | 376 | consensus WD40 repeat protein [General function pr | 99.7 | |
| PRK01742 | 429 | tolB translocation protein TolB; Provisional | 99.7 | |
| KOG1524 | 737 | consensus WD40 repeat-containing protein CHE-2 [Ge | 99.7 | |
| KOG1007 | 370 | consensus WD repeat protein TSSC1, WD repeat super | 99.69 | |
| KOG0649 | 325 | consensus WD40 repeat protein [General function pr | 99.69 | |
| KOG1587 | 555 | consensus Cytoplasmic dynein intermediate chain [C | 99.69 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 99.69 | |
| KOG0290 | 364 | consensus Conserved WD40 repeat-containing protein | 99.67 | |
| KOG2110 | 391 | consensus Uncharacterized conserved protein, conta | 99.66 | |
| KOG4497 | 447 | consensus Uncharacterized conserved protein WDR8, | 99.66 | |
| PRK03629 | 429 | tolB translocation protein TolB; Provisional | 99.66 | |
| KOG1523 | 361 | consensus Actin-related protein Arp2/3 complex, su | 99.66 | |
| PRK01742 | 429 | tolB translocation protein TolB; Provisional | 99.66 | |
| KOG2110 | 391 | consensus Uncharacterized conserved protein, conta | 99.66 | |
| PF02239 | 369 | Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO | 99.65 | |
| KOG2321 | 703 | consensus WD40 repeat protein [General function pr | 99.65 | |
| KOG1310 | 758 | consensus WD40 repeat protein [General function pr | 99.65 | |
| KOG2139 | 445 | consensus WD40 repeat protein [General function pr | 99.64 | |
| KOG1272 | 545 | consensus WD40-repeat-containing subunit of the 18 | 99.64 | |
| KOG0771 | 398 | consensus Prolactin regulatory element-binding pro | 99.62 | |
| PRK04922 | 433 | tolB translocation protein TolB; Provisional | 99.62 | |
| PRK05137 | 435 | tolB translocation protein TolB; Provisional | 99.61 | |
| KOG2111 | 346 | consensus Uncharacterized conserved protein, conta | 99.6 | |
| KOG4227 | 609 | consensus WD40 repeat protein [General function pr | 99.6 | |
| KOG1963 | 792 | consensus WD40 repeat protein [General function pr | 99.6 | |
| PF10282 | 345 | Lactonase: Lactonase, 7-bladed beta-propeller; Int | 99.59 | |
| KOG1524 | 737 | consensus WD40 repeat-containing protein CHE-2 [Ge | 99.59 | |
| KOG1445 | 1012 | consensus Tumor-specific antigen (contains WD repe | 99.59 | |
| KOG0644 | 1113 | consensus Uncharacterized conserved protein, conta | 99.59 | |
| KOG2394 | 636 | consensus WD40 protein DMR-N9 [General function pr | 99.58 | |
| PRK02889 | 427 | tolB translocation protein TolB; Provisional | 99.58 | |
| KOG1517 | 1387 | consensus Guanine nucleotide binding protein MIP1 | 99.58 | |
| KOG0771 | 398 | consensus Prolactin regulatory element-binding pro | 99.57 | |
| KOG1523 | 361 | consensus Actin-related protein Arp2/3 complex, su | 99.56 | |
| KOG1009 | 434 | consensus Chromatin assembly complex 1 subunit B/C | 99.56 | |
| KOG3881 | 412 | consensus Uncharacterized conserved protein [Funct | 99.56 | |
| PRK02889 | 427 | tolB translocation protein TolB; Provisional | 99.55 | |
| KOG2315 | 566 | consensus Predicted translation initiation factor | 99.55 | |
| PF10282 | 345 | Lactonase: Lactonase, 7-bladed beta-propeller; Int | 99.55 | |
| PRK03629 | 429 | tolB translocation protein TolB; Provisional | 99.54 | |
| KOG1354 | 433 | consensus Serine/threonine protein phosphatase 2A, | 99.54 | |
| PRK04922 | 433 | tolB translocation protein TolB; Provisional | 99.53 | |
| KOG2394 | 636 | consensus WD40 protein DMR-N9 [General function pr | 99.53 | |
| TIGR02800 | 417 | propeller_TolB tol-pal system beta propeller repea | 99.53 | |
| KOG3881 | 412 | consensus Uncharacterized conserved protein [Funct | 99.51 | |
| PRK05137 | 435 | tolB translocation protein TolB; Provisional | 99.51 | |
| PRK00178 | 430 | tolB translocation protein TolB; Provisional | 99.5 | |
| PF02239 | 369 | Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO | 99.5 | |
| KOG2111 | 346 | consensus Uncharacterized conserved protein, conta | 99.49 | |
| KOG1272 | 545 | consensus WD40-repeat-containing subunit of the 18 | 99.48 | |
| KOG4497 | 447 | consensus Uncharacterized conserved protein WDR8, | 99.47 | |
| PRK04792 | 448 | tolB translocation protein TolB; Provisional | 99.47 | |
| KOG1240 | 1431 | consensus Protein kinase containing WD40 repeats [ | 99.46 | |
| KOG2139 | 445 | consensus WD40 repeat protein [General function pr | 99.45 | |
| KOG1409 | 404 | consensus Uncharacterized conserved protein, conta | 99.44 | |
| COG5354 | 561 | Uncharacterized protein, contains Trp-Asp (WD) rep | 99.43 | |
| KOG0322 | 323 | consensus G-protein beta subunit-like protein GNB1 | 99.42 | |
| KOG2321 | 703 | consensus WD40 repeat protein [General function pr | 99.42 | |
| COG2706 | 346 | 3-carboxymuconate cyclase [Carbohydrate transport | 99.41 | |
| KOG1334 | 559 | consensus WD40 repeat protein [General function pr | 99.4 | |
| TIGR02658 | 352 | TTQ_MADH_Hv methylamine dehydrogenase heavy chain. | 99.4 | |
| PRK00178 | 430 | tolB translocation protein TolB; Provisional | 99.39 | |
| KOG4594 | 354 | consensus Sequence-specific single-stranded-DNA-bi | 99.39 | |
| PRK04792 | 448 | tolB translocation protein TolB; Provisional | 99.38 | |
| TIGR02800 | 417 | propeller_TolB tol-pal system beta propeller repea | 99.38 | |
| PRK01029 | 428 | tolB translocation protein TolB; Provisional | 99.38 | |
| KOG1310 | 758 | consensus WD40 repeat protein [General function pr | 99.38 | |
| PF08662 | 194 | eIF2A: Eukaryotic translation initiation factor eI | 99.37 | |
| PRK01029 | 428 | tolB translocation protein TolB; Provisional | 99.36 | |
| PF08662 | 194 | eIF2A: Eukaryotic translation initiation factor eI | 99.34 | |
| COG2706 | 346 | 3-carboxymuconate cyclase [Carbohydrate transport | 99.33 | |
| TIGR03300 | 377 | assembly_YfgL outer membrane assembly lipoprotein | 99.3 | |
| KOG0974 | 967 | consensus WD-repeat protein WDR6, WD repeat superf | 99.3 | |
| KOG4547 | 541 | consensus WD40 repeat-containing protein [General | 99.29 | |
| KOG2314 | 698 | consensus Translation initiation factor 3, subunit | 99.28 | |
| KOG4190 | 1034 | consensus Uncharacterized conserved protein [Funct | 99.25 | |
| KOG2315 | 566 | consensus Predicted translation initiation factor | 99.24 | |
| TIGR02658 | 352 | TTQ_MADH_Hv methylamine dehydrogenase heavy chain. | 99.22 | |
| KOG0974 | 967 | consensus WD-repeat protein WDR6, WD repeat superf | 99.22 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 99.22 | |
| KOG0280 | 339 | consensus Uncharacterized conserved protein [Amino | 99.21 | |
| COG5354 | 561 | Uncharacterized protein, contains Trp-Asp (WD) rep | 99.21 | |
| TIGR03300 | 377 | assembly_YfgL outer membrane assembly lipoprotein | 99.19 | |
| PRK04043 | 419 | tolB translocation protein TolB; Provisional | 99.18 | |
| KOG0309 | 1081 | consensus Conserved WD40 repeat-containing protein | 99.18 | |
| COG4946 | 668 | Uncharacterized protein related to the periplasmic | 99.18 | |
| KOG4547 | 541 | consensus WD40 repeat-containing protein [General | 99.16 | |
| KOG1409 | 404 | consensus Uncharacterized conserved protein, conta | 99.15 | |
| PLN02919 | 1057 | haloacid dehalogenase-like hydrolase family protei | 99.15 | |
| KOG1354 | 433 | consensus Serine/threonine protein phosphatase 2A, | 99.15 | |
| PLN02919 | 1057 | haloacid dehalogenase-like hydrolase family protei | 99.12 | |
| COG5170 | 460 | CDC55 Serine/threonine protein phosphatase 2A, reg | 99.12 | |
| PF04762 | 928 | IKI3: IKI3 family; InterPro: IPR006849 Members of | 99.08 | |
| PRK04043 | 419 | tolB translocation protein TolB; Provisional | 99.07 | |
| KOG0280 | 339 | consensus Uncharacterized conserved protein [Amino | 99.05 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 99.04 | |
| KOG1064 | 2439 | consensus RAVE (regulator of V-ATPase assembly) co | 99.02 | |
| KOG1064 | 2439 | consensus RAVE (regulator of V-ATPase assembly) co | 99.02 | |
| PF08450 | 246 | SGL: SMP-30/Gluconolaconase/LRE-like region; Inter | 99.0 | |
| KOG1912 | 1062 | consensus WD40 repeat protein [General function pr | 98.98 | |
| KOG4532 | 344 | consensus WD40-like repeat containing protein [Gen | 98.98 | |
| PF08450 | 246 | SGL: SMP-30/Gluconolaconase/LRE-like region; Inter | 98.97 | |
| COG4946 | 668 | Uncharacterized protein related to the periplasmic | 98.96 | |
| KOG1912 | 1062 | consensus WD40 repeat protein [General function pr | 98.94 | |
| PF13360 | 238 | PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A | 98.92 | |
| PRK11138 | 394 | outer membrane biogenesis protein BamB; Provisiona | 98.9 | |
| KOG0309 | 1081 | consensus Conserved WD40 repeat-containing protein | 98.89 | |
| PF04762 | 928 | IKI3: IKI3 family; InterPro: IPR006849 Members of | 98.86 | |
| KOG3914 | 390 | consensus WD repeat protein WDR4 [Function unknown | 98.86 | |
| KOG0882 | 558 | consensus Cyclophilin-related peptidyl-prolyl cis- | 98.84 | |
| KOG1832 | 1516 | consensus HIV-1 Vpr-binding protein [Cell cycle co | 98.82 | |
| KOG4190 | 1034 | consensus Uncharacterized conserved protein [Funct | 98.81 | |
| PRK11138 | 394 | outer membrane biogenesis protein BamB; Provisiona | 98.77 | |
| PF13360 | 238 | PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A | 98.76 | |
| KOG2314 | 698 | consensus Translation initiation factor 3, subunit | 98.75 | |
| PF07433 | 305 | DUF1513: Protein of unknown function (DUF1513); In | 98.72 | |
| PF00930 | 353 | DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin | 98.71 | |
| PF15492 | 282 | Nbas_N: Neuroblastoma-amplified sequence, N termin | 98.71 | |
| KOG4532 | 344 | consensus WD40-like repeat containing protein [Gen | 98.67 | |
| COG5170 | 460 | CDC55 Serine/threonine protein phosphatase 2A, reg | 98.64 | |
| KOG1645 | 463 | consensus RING-finger-containing E3 ubiquitin liga | 98.64 | |
| KOG4714 | 319 | consensus Nucleoporin [Nuclear structure] | 98.62 | |
| PRK02888 | 635 | nitrous-oxide reductase; Validated | 98.6 | |
| PF07433 | 305 | DUF1513: Protein of unknown function (DUF1513); In | 98.59 | |
| KOG4714 | 319 | consensus Nucleoporin [Nuclear structure] | 98.58 | |
| KOG1645 | 463 | consensus RING-finger-containing E3 ubiquitin liga | 98.58 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 98.58 | |
| KOG3914 | 390 | consensus WD repeat protein WDR4 [Function unknown | 98.57 | |
| PF15492 | 282 | Nbas_N: Neuroblastoma-amplified sequence, N termin | 98.52 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 98.52 | |
| PF02897 | 414 | Peptidase_S9_N: Prolyl oligopeptidase, N-terminal | 98.49 | |
| KOG1832 | 1516 | consensus HIV-1 Vpr-binding protein [Cell cycle co | 98.49 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 98.49 | |
| PF14583 | 386 | Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C | 98.48 | |
| COG3391 | 381 | Uncharacterized conserved protein [Function unknow | 98.47 | |
| KOG1275 | 1118 | consensus PAB-dependent poly(A) ribonuclease, subu | 98.47 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 98.46 | |
| PF08513 | 27 | LisH: LisH; InterPro: IPR013720 The LisH motif is | 98.45 | |
| cd00216 | 488 | PQQ_DH Dehydrogenases with pyrrolo-quinoline quino | 98.45 | |
| PF06433 | 342 | Me-amine-dh_H: Methylamine dehydrogenase heavy cha | 98.42 | |
| KOG1275 | 1118 | consensus PAB-dependent poly(A) ribonuclease, subu | 98.4 | |
| KOG2695 | 425 | consensus WD40 repeat protein [General function pr | 98.4 | |
| KOG0882 | 558 | consensus Cyclophilin-related peptidyl-prolyl cis- | 98.4 | |
| cd00216 | 488 | PQQ_DH Dehydrogenases with pyrrolo-quinoline quino | 98.35 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 98.33 | |
| PF11768 | 545 | DUF3312: Protein of unknown function (DUF3312); In | 98.32 | |
| KOG3621 | 726 | consensus WD40 repeat-containing protein [General | 98.32 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 98.3 | |
| KOG4649 | 354 | consensus PQQ (pyrrolo-quinoline quinone) repeat p | 98.3 | |
| COG0823 | 425 | TolB Periplasmic component of the Tol biopolymer t | 98.28 | |
| PF08596 | 395 | Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; | 98.25 | |
| PF00400 | 39 | WD40: WD domain, G-beta repeat; InterPro: IPR01978 | 98.24 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.24 | |
| KOG2695 | 425 | consensus WD40 repeat protein [General function pr | 98.23 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 98.22 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.2 | |
| PF00400 | 39 | WD40: WD domain, G-beta repeat; InterPro: IPR01978 | 98.19 | |
| COG3391 | 381 | Uncharacterized conserved protein [Function unknow | 98.18 | |
| PRK02888 | 635 | nitrous-oxide reductase; Validated | 98.17 | |
| COG0823 | 425 | TolB Periplasmic component of the Tol biopolymer t | 98.15 | |
| KOG4649 | 354 | consensus PQQ (pyrrolo-quinoline quinone) repeat p | 98.13 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 98.12 | |
| PF00780 | 275 | CNH: CNH domain; InterPro: IPR001180 Based on sequ | 98.12 | |
| TIGR03075 | 527 | PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan | 98.1 | |
| PF06977 | 248 | SdiA-regulated: SdiA-regulated; InterPro: IPR00972 | 98.08 | |
| PF00930 | 353 | DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin | 98.07 | |
| PF06433 | 342 | Me-amine-dh_H: Methylamine dehydrogenase heavy cha | 98.07 | |
| PF06977 | 248 | SdiA-regulated: SdiA-regulated; InterPro: IPR00972 | 98.06 | |
| PF03178 | 321 | CPSF_A: CPSF A subunit region; InterPro: IPR004871 | 98.01 | |
| PF11768 | 545 | DUF3312: Protein of unknown function (DUF3312); In | 98.01 | |
| PF08596 | 395 | Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; | 97.99 | |
| KOG1008 | 783 | consensus Uncharacterized conserved protein, conta | 97.98 | |
| PF03178 | 321 | CPSF_A: CPSF A subunit region; InterPro: IPR004871 | 97.98 | |
| TIGR03075 | 527 | PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan | 97.95 | |
| PF00780 | 275 | CNH: CNH domain; InterPro: IPR001180 Based on sequ | 97.88 | |
| PF04841 | 410 | Vps16_N: Vps16, N-terminal region; InterPro: IPR00 | 97.85 | |
| KOG1008 | 783 | consensus Uncharacterized conserved protein, conta | 97.82 | |
| PF02897 | 414 | Peptidase_S9_N: Prolyl oligopeptidase, N-terminal | 97.8 | |
| COG5276 | 370 | Uncharacterized conserved protein [Function unknow | 97.8 | |
| COG3386 | 307 | Gluconolactonase [Carbohydrate transport and metab | 97.77 | |
| KOG3621 | 726 | consensus WD40 repeat-containing protein [General | 97.72 | |
| PRK10115 | 686 | protease 2; Provisional | 97.7 | |
| PF08553 | 794 | VID27: VID27 cytoplasmic protein; InterPro: IPR013 | 97.68 | |
| PF14583 | 386 | Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C | 97.67 | |
| COG3386 | 307 | Gluconolactonase [Carbohydrate transport and metab | 97.57 | |
| PF05694 | 461 | SBP56: 56kDa selenium binding protein (SBP56); Int | 97.51 | |
| COG3490 | 366 | Uncharacterized protein conserved in bacteria [Fun | 97.46 | |
| KOG1897 | 1096 | consensus Damage-specific DNA binding complex, sub | 97.45 | |
| PF04841 | 410 | Vps16_N: Vps16, N-terminal region; InterPro: IPR00 | 97.44 | |
| PRK13616 | 591 | lipoprotein LpqB; Provisional | 97.43 | |
| KOG4640 | 665 | consensus Anaphase-promoting complex (APC), subuni | 97.4 | |
| KOG4499 | 310 | consensus Ca2+-binding protein Regucalcin/SMP30 [I | 97.38 | |
| PF05096 | 264 | Glu_cyclase_2: Glutamine cyclotransferase; InterPr | 97.33 | |
| PRK10115 | 686 | protease 2; Provisional | 97.31 | |
| KOG2395 | 644 | consensus Protein involved in vacuole import and d | 97.26 | |
| PRK13616 | 591 | lipoprotein LpqB; Provisional | 97.23 | |
| PRK13684 | 334 | Ycf48-like protein; Provisional | 97.18 | |
| PF08553 | 794 | VID27: VID27 cytoplasmic protein; InterPro: IPR013 | 97.18 | |
| PF15390 | 671 | DUF4613: Domain of unknown function (DUF4613) | 97.17 | |
| PF14870 | 302 | PSII_BNR: Photosynthesis system II assembly factor | 97.16 | |
| KOG4441 | 571 | consensus Proteins containing BTB/POZ and Kelch do | 97.11 | |
| PHA02713 | 557 | hypothetical protein; Provisional | 97.03 | |
| PF14727 | 418 | PHTB1_N: PTHB1 N-terminus | 97.03 | |
| smart00667 | 34 | LisH Lissencephaly type-1-like homology motif. Alp | 97.01 | |
| PF14783 | 111 | BBS2_Mid: Ciliary BBSome complex subunit 2, middle | 97.0 | |
| KOG4441 | 571 | consensus Proteins containing BTB/POZ and Kelch do | 96.98 | |
| PF10647 | 253 | Gmad1: Lipoprotein LpqB beta-propeller domain; Int | 96.97 | |
| PF05694 | 461 | SBP56: 56kDa selenium binding protein (SBP56); Int | 96.94 | |
| smart00320 | 40 | WD40 WD40 repeats. Note that these repeats are per | 96.94 | |
| COG3204 | 316 | Uncharacterized protein conserved in bacteria [Fun | 96.91 | |
| PF07995 | 331 | GSDH: Glucose / Sorbosone dehydrogenase; InterPro: | 96.86 | |
| KOG2395 | 644 | consensus Protein involved in vacuole import and d | 96.85 | |
| smart00320 | 40 | WD40 WD40 repeats. Note that these repeats are per | 96.85 | |
| KOG1897 | 1096 | consensus Damage-specific DNA binding complex, sub | 96.77 | |
| PF05096 | 264 | Glu_cyclase_2: Glutamine cyclotransferase; InterPr | 96.75 | |
| COG3490 | 366 | Uncharacterized protein conserved in bacteria [Fun | 96.73 | |
| PF14655 | 415 | RAB3GAP2_N: Rab3 GTPase-activating protein regulat | 96.73 | |
| COG3204 | 316 | Uncharacterized protein conserved in bacteria [Fun | 96.72 | |
| COG1520 | 370 | FOG: WD40-like repeat [Function unknown] | 96.68 | |
| COG5276 | 370 | Uncharacterized conserved protein [Function unknow | 96.66 | |
| PLN00033 | 398 | photosystem II stability/assembly factor; Provisio | 96.65 | |
| KOG4640 | 665 | consensus Anaphase-promoting complex (APC), subuni | 96.64 | |
| KOG2444 | 238 | consensus WD40 repeat protein [General function pr | 96.56 | |
| PF07995 | 331 | GSDH: Glucose / Sorbosone dehydrogenase; InterPro: | 96.54 | |
| KOG4499 | 310 | consensus Ca2+-binding protein Regucalcin/SMP30 [I | 96.53 | |
| PF14870 | 302 | PSII_BNR: Photosynthesis system II assembly factor | 96.47 | |
| PF02333 | 381 | Phytase: Phytase; InterPro: IPR003431 Phytase (3.1 | 96.45 | |
| TIGR03074 | 764 | PQQ_membr_DH membrane-bound PQQ-dependent dehydrog | 96.44 | |
| PHA02713 | 557 | hypothetical protein; Provisional | 96.34 | |
| TIGR03118 | 336 | PEPCTERM_chp_1 conserved hypothetical protein TIGR | 96.31 | |
| PF14783 | 111 | BBS2_Mid: Ciliary BBSome complex subunit 2, middle | 96.2 | |
| COG4257 | 353 | Vgb Streptogramin lyase [Defense mechanisms] | 96.15 | |
| KOG2444 | 238 | consensus WD40 repeat protein [General function pr | 96.11 | |
| TIGR02604 | 367 | Piru_Ver_Nterm putative membrane-bound dehydrogena | 96.1 | |
| KOG2079 | 1206 | consensus Vacuolar assembly/sorting protein VPS8 [ | 96.08 | |
| PF10647 | 253 | Gmad1: Lipoprotein LpqB beta-propeller domain; Int | 96.02 | |
| PF14655 | 415 | RAB3GAP2_N: Rab3 GTPase-activating protein regulat | 95.88 | |
| PHA03098 | 534 | kelch-like protein; Provisional | 95.73 | |
| TIGR03074 | 764 | PQQ_membr_DH membrane-bound PQQ-dependent dehydrog | 95.67 | |
| PF15390 | 671 | DUF4613: Domain of unknown function (DUF4613) | 95.64 | |
| KOG3630 | 1405 | consensus Nuclear pore complex, Nup214/CAN compone | 95.63 | |
| PLN02153 | 341 | epithiospecifier protein | 95.61 | |
| KOG3630 | 1405 | consensus Nuclear pore complex, Nup214/CAN compone | 95.49 | |
| COG4257 | 353 | Vgb Streptogramin lyase [Defense mechanisms] | 95.46 | |
| KOG2377 | 657 | consensus Uncharacterized conserved protein [Funct | 95.43 | |
| KOG2079 | 1206 | consensus Vacuolar assembly/sorting protein VPS8 [ | 95.42 | |
| TIGR02604 | 367 | Piru_Ver_Nterm putative membrane-bound dehydrogena | 95.34 | |
| PHA03098 | 534 | kelch-like protein; Provisional | 95.32 | |
| PRK13684 | 334 | Ycf48-like protein; Provisional | 95.24 | |
| COG1520 | 370 | FOG: WD40-like repeat [Function unknown] | 95.19 | |
| PF10214 | 765 | Rrn6: RNA polymerase I-specific transcription-init | 95.08 | |
| PLN00033 | 398 | photosystem II stability/assembly factor; Provisio | 95.03 | |
| KOG1898 | 1205 | consensus Splicing factor 3b, subunit 3 [RNA proce | 94.76 | |
| PF10168 | 717 | Nup88: Nuclear pore component; InterPro: IPR019321 | 94.69 | |
| PF03022 | 287 | MRJP: Major royal jelly protein; InterPro: IPR0035 | 94.26 | |
| PF14761 | 215 | HPS3_N: Hermansky-Pudlak syndrome 3 | 94.23 | |
| COG3292 | 671 | Predicted periplasmic ligand-binding sensor domain | 94.23 | |
| PF12894 | 47 | Apc4_WD40: Anaphase-promoting complex subunit 4 WD | 94.23 | |
| PF12234 | 631 | Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0 | 94.22 | |
| PRK10350 | 145 | hypothetical protein; Provisional | 94.2 | |
| PHA02790 | 480 | Kelch-like protein; Provisional | 94.15 | |
| PF10395 | 670 | Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an | 94.15 | |
| TIGR03548 | 323 | mutarot_permut cyclically-permuted mutatrotase fam | 94.08 | |
| PF10214 | 765 | Rrn6: RNA polymerase I-specific transcription-init | 94.03 | |
| PLN02153 | 341 | epithiospecifier protein | 93.92 | |
| COG5167 | 776 | VID27 Protein involved in vacuole import and degra | 93.85 | |
| PHA02790 | 480 | Kelch-like protein; Provisional | 93.75 | |
| KOG1896 | 1366 | consensus mRNA cleavage and polyadenylation factor | 93.73 | |
| PLN02193 | 470 | nitrile-specifier protein | 93.64 | |
| PF10433 | 504 | MMS1_N: Mono-functional DNA-alkylating methyl meth | 93.59 | |
| PLN02193 | 470 | nitrile-specifier protein | 93.52 | |
| TIGR01063 | 800 | gyrA DNA gyrase, A subunit. This model describes t | 93.5 | |
| COG1506 | 620 | DAP2 Dipeptidyl aminopeptidases/acylaminoacyl-pept | 93.39 | |
| PRK14131 | 376 | N-acetylneuraminic acid mutarotase; Provisional | 93.37 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 93.37 | |
| PF14727 | 418 | PHTB1_N: PTHB1 N-terminus | 93.12 | |
| COG3823 | 262 | Glutamine cyclotransferase [Posttranslational modi | 93.09 | |
| PF14781 | 136 | BBS2_N: Ciliary BBSome complex subunit 2, N-termin | 93.09 | |
| PF11498 | 468 | Activator_LAG-3: Transcriptional activator LAG-3; | 93.06 | |
| KOG1916 | 1283 | consensus Nuclear protein, contains WD40 repeats [ | 92.99 | |
| smart00036 | 302 | CNH Domain found in NIK1-like kinases, mouse citro | 92.93 | |
| PF10433 | 504 | MMS1_N: Mono-functional DNA-alkylating methyl meth | 92.88 | |
| PF12234 | 631 | Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0 | 92.78 | |
| PF10168 | 717 | Nup88: Nuclear pore component; InterPro: IPR019321 | 92.69 | |
| TIGR03547 | 346 | muta_rot_YjhT mutatrotase, YjhT family. Members of | 92.69 | |
| COG1770 | 682 | PtrB Protease II [Amino acid transport and metabol | 92.66 | |
| PF13449 | 326 | Phytase-like: Esterase-like activity of phytase | 92.59 | |
| KOG1916 | 1283 | consensus Nuclear protein, contains WD40 repeats [ | 92.56 | |
| TIGR03548 | 323 | mutarot_permut cyclically-permuted mutatrotase fam | 92.47 | |
| PRK05560 | 805 | DNA gyrase subunit A; Validated | 92.45 | |
| COG3823 | 262 | Glutamine cyclotransferase [Posttranslational modi | 92.26 | |
| PF08728 | 717 | CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans | 92.11 | |
| PF12894 | 47 | Apc4_WD40: Anaphase-promoting complex subunit 4 WD | 91.98 | |
| COG5167 | 776 | VID27 Protein involved in vacuole import and degra | 91.94 | |
| COG1506 | 620 | DAP2 Dipeptidyl aminopeptidases/acylaminoacyl-pept | 91.9 | |
| TIGR03547 | 346 | muta_rot_YjhT mutatrotase, YjhT family. Members of | 91.71 | |
| KOG2247 | 615 | consensus WD40 repeat-containing protein [General | 91.67 | |
| PRK05560 | 805 | DNA gyrase subunit A; Validated | 91.63 | |
| KOG2377 | 657 | consensus Uncharacterized conserved protein [Funct | 91.58 | |
| KOG1983 | 993 | consensus Tomosyn and related SNARE-interacting pr | 91.51 | |
| TIGR03118 | 336 | PEPCTERM_chp_1 conserved hypothetical protein TIGR | 91.47 | |
| PRK14131 | 376 | N-acetylneuraminic acid mutarotase; Provisional | 91.22 | |
| PF14781 | 136 | BBS2_N: Ciliary BBSome complex subunit 2, N-termin | 91.14 | |
| PF13449 | 326 | Phytase-like: Esterase-like activity of phytase | 90.93 | |
| PF14761 | 215 | HPS3_N: Hermansky-Pudlak syndrome 3 | 90.89 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 90.82 | |
| COG5290 | 1243 | IkappaB kinase complex, IKAP component [Transcript | 90.71 | |
| KOG2247 | 615 | consensus WD40 repeat-containing protein [General | 90.4 | |
| PF05935 | 477 | Arylsulfotrans: Arylsulfotransferase (ASST); Inter | 90.38 | |
| PF02333 | 381 | Phytase: Phytase; InterPro: IPR003431 Phytase (3.1 | 90.3 | |
| PF07250 | 243 | Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterP | 89.75 | |
| PF08728 | 717 | CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans | 89.74 | |
| PF10395 | 670 | Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an | 89.59 | |
| PF07569 | 219 | Hira: TUP1-like enhancer of split; InterPro: IPR01 | 89.34 | |
| TIGR03032 | 335 | conserved hypothetical protein TIGR03032. This pro | 89.31 | |
| TIGR03606 | 454 | non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH | 89.26 | |
| KOG1898 | 1205 | consensus Splicing factor 3b, subunit 3 [RNA proce | 88.78 |
| >KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-44 Score=369.75 Aligned_cols=308 Identities=24% Similarity=0.390 Sum_probs=277.5
Q ss_pred CCCeEEcccCCCceEEeecCCCCCCCCccccccccCCCeeeeEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEeC
Q 003236 505 MDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCT 584 (837)
Q Consensus 505 ~~~~v~~Gs~D~~v~~w~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~H~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~ 584 (837)
....+++|+-|.++++|+.... .+..+.++|...|.||+|+|||+.||+|+.||.|++||.
T Consensus 126 ~g~~l~tGsGD~TvR~WD~~Te-------------------Tp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdp 186 (480)
T KOG0271|consen 126 TGSRLVTGSGDTTVRLWDLDTE-------------------TPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDP 186 (480)
T ss_pred CCceEEecCCCceEEeeccCCC-------------------CcceeecCCccEEEEEEECCCcchhhccccCCeEEEecC
Confidence 3478899999999999955432 346788999999999999999999999999999999999
Q ss_pred CCCeEE-EEeccCCCCeEEEEEcC-----CCCEEEEEeCCCeEEEEEcCCCCceeEEeeccccceEEEEEcCCCCeEEEE
Q 003236 585 ESFTVK-STLEEHTQWITDVRFSP-----SLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCS 658 (837)
Q Consensus 585 ~t~~~~-~~l~~h~~~I~~l~fsp-----dg~~Latgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~sl~fspdg~~llas 658 (837)
++++.+ ..+.+|..+|++++|.| ..++|++++.||.|+|||+..+. ++..+.+|+.+|+|+.|-- ..++++
T Consensus 187 ktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~-~~~~lsgHT~~VTCvrwGG--~gliyS 263 (480)
T KOG0271|consen 187 KTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGT-CVRTLSGHTASVTCVRWGG--EGLIYS 263 (480)
T ss_pred CCCCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCce-EEEEeccCccceEEEEEcC--CceEEe
Confidence 988776 77899999999999976 57799999999999999999755 5899999999999999984 458999
Q ss_pred EeCCCcEEEEECCCCeeeeEEecCC-CeeEEEEe-----------cCCC-------------------------EEEEEE
Q 003236 659 CDNNSEIRYWSINNGSCAGVFKCQS-GATQMRFQ-----------PRLG-------------------------RILAAA 701 (837)
Q Consensus 659 gs~Dg~I~vwDl~t~~~i~~~~~~~-~i~sl~~s-----------p~g~-------------------------~llags 701 (837)
++.|++|++|+...|++.+.++.+. .|+.++.+ |.++ .+++|+
T Consensus 264 gS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgs 343 (480)
T KOG0271|consen 264 GSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGS 343 (480)
T ss_pred cCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEec
Confidence 9999999999999999998887643 46666655 3333 499999
Q ss_pred cCCeEEEEECCCC-eEEEEEcCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCC
Q 003236 702 IENYISILDVETQ-VCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPT 779 (837)
Q Consensus 702 ~dg~I~iwDl~s~-~~~~~l~~h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fspd 779 (837)
.|.++.+|+.... +++....+|..-|+.+.|+||+++|++++ |..|++||-+++ +.+..|.+|-..|+.++|+.|
T Consensus 344 Dd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tG---k~lasfRGHv~~VYqvawsaD 420 (480)
T KOG0271|consen 344 DDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTG---KFLASFRGHVAAVYQVAWSAD 420 (480)
T ss_pred CCceEEEecccccccchhhhhchhhheeeEEECCCccEEEEeecccceeeeeCCCc---chhhhhhhccceeEEEEeccC
Confidence 9999999997654 68888999999999999999999999999 999999999999 889999999999999999999
Q ss_pred CCEEEEEEcCCeEEEEECCCCcEE-EeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 003236 780 FPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 837 (837)
Q Consensus 780 g~~L~sgs~dg~I~IwDl~s~~~~-~l~~h~~~V~sla~spdg~~LaSgs~DG~I~IWd 837 (837)
.+.|++++.|.+|++||+++.++. .+.+|.+.|.++.|+|||..+++|+.|..++||.
T Consensus 421 sRLlVS~SkDsTLKvw~V~tkKl~~DLpGh~DEVf~vDwspDG~rV~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 421 SRLLVSGSKDSTLKVWDVRTKKLKQDLPGHADEVFAVDWSPDGQRVASGGKDKVLRLWR 479 (480)
T ss_pred ccEEEEcCCCceEEEEEeeeeeecccCCCCCceEEEEEecCCCceeecCCCceEEEeec
Confidence 999999999999999999999987 7889999999999999999999999999999995
|
|
| >KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-42 Score=359.46 Aligned_cols=289 Identities=24% Similarity=0.380 Sum_probs=266.2
Q ss_pred eEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEE
Q 003236 546 TEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWD 625 (837)
Q Consensus 546 ~~~~~l~~H~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWD 625 (837)
++-..+.+|.++|.|+.|+|+|+.||+|+.|.++++||+.+..+..++++|..+|.||+|+|||+.||+|+.||+|++||
T Consensus 106 rCssS~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwd 185 (480)
T KOG0271|consen 106 RCSSSIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWD 185 (480)
T ss_pred eeccccCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCcceeecCCccEEEEEEECCCcchhhccccCCeEEEec
Confidence 44567889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCceeEEeeccccceEEEEEcCC----CCeEEEEEeCCCcEEEEECCCCeeeeEEec-CCCeeEEEEecCCCEEEEE
Q 003236 626 TENPDYSLRTFTGHSTTVMSLDFHPS----KEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAA 700 (837)
Q Consensus 626 l~~~~~~~~~~~~h~~~V~sl~fspd----g~~llasgs~Dg~I~vwDl~t~~~i~~~~~-~~~i~sl~~sp~g~~llag 700 (837)
..+++...+.+.+|...|++++|.|- ...++++++.||.|+|||+..+.++..+.. ...|+|++|--+ ++|+++
T Consensus 186 pktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~VTCvrwGG~-gliySg 264 (480)
T KOG0271|consen 186 PKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTASVTCVRWGGE-GLIYSG 264 (480)
T ss_pred CCCCCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccCccceEEEEEcCC-ceEEec
Confidence 99999888999999999999999873 234788999999999999999999988875 457999999765 789999
Q ss_pred EcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEc-----------CCCC-------------------------EEEEEe-
Q 003236 701 AIENYISILDVETQVCRLKLQGHKNQVHSVCWN-----------TSGE-------------------------YLASVS- 743 (837)
Q Consensus 701 s~dg~I~iwDl~s~~~~~~l~~h~~~V~sl~~s-----------pdg~-------------------------~Lasgs- 743 (837)
+.|++|++|+...+.+..++++|...|+.++++ |.++ .|++|+
T Consensus 265 S~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsD 344 (480)
T KOG0271|consen 265 SQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSD 344 (480)
T ss_pred CCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecC
Confidence 999999999999999999999999999999877 2233 499999
Q ss_pred CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE-EeccCCCCeeEEEEeCCCC
Q 003236 744 DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNG 822 (837)
Q Consensus 744 Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fspdg~~L~sgs~dg~I~IwDl~s~~~~-~l~~h~~~V~sla~spdg~ 822 (837)
|.++.+|+-.... +++....+|...|+.+.|+||+++|++++.|..|++||.++|+.+ .+.+|-..|..++|+.|.+
T Consensus 345 d~tlflW~p~~~k--kpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasfRGHv~~VYqvawsaDsR 422 (480)
T KOG0271|consen 345 DFTLFLWNPFKSK--KPITRMTGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFLASFRGHVAAVYQVAWSADSR 422 (480)
T ss_pred CceEEEecccccc--cchhhhhchhhheeeEEECCCccEEEEeecccceeeeeCCCcchhhhhhhccceeEEEEeccCcc
Confidence 7799999876542 678888999999999999999999999999999999999999988 7889999999999999999
Q ss_pred EEEEEECCCcEEEeC
Q 003236 823 MVASASHDKCVKIWK 837 (837)
Q Consensus 823 ~LaSgs~DG~I~IWd 837 (837)
+|++|+.|.++++||
T Consensus 423 LlVS~SkDsTLKvw~ 437 (480)
T KOG0271|consen 423 LLVSGSKDSTLKVWD 437 (480)
T ss_pred EEEEcCCCceEEEEE
Confidence 999999999999996
|
|
| >KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-40 Score=350.13 Aligned_cols=285 Identities=26% Similarity=0.429 Sum_probs=266.1
Q ss_pred EEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEeccCCCCeEEEEEcCC--CCEEEEEeCCCeEEEEE
Q 003236 548 FQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPS--LSRLATSSADRTVRVWD 625 (837)
Q Consensus 548 ~~~l~~H~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~I~~l~fspd--g~~Latgs~Dg~I~IWD 625 (837)
+..--+-+.+|..+.||.|++.||||+.+|.++||+..+...+.+|.+|.+.|.++.|+|. +..||||+.||+|++|+
T Consensus 168 ~~SQ~gd~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~ 247 (459)
T KOG0272|consen 168 VCSQVGDTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQCNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWK 247 (459)
T ss_pred hhhhccCCCcceeeEeecCCCeEEEeecCCceeEeecCCcceeEEEeccccceeeEEEccCCCccceeeeccCCceeeec
Confidence 3344477889999999999999999999999999999999999999999999999999996 67899999999999999
Q ss_pred cCCCCceeEEeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeeEEec-CCCeeEEEEecCCCEEEEEEcCC
Q 003236 626 TENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAIEN 704 (837)
Q Consensus 626 l~~~~~~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~-~~~i~sl~~sp~g~~llags~dg 704 (837)
+++. .++..+.+|...|..++|+|+|. +|++++.|.+-++||++++..+..... ..+|.+++|.+||..+++|+.|.
T Consensus 248 ~~~e-~~l~~l~gH~~RVs~VafHPsG~-~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~tGGlD~ 325 (459)
T KOG0272|consen 248 LSQE-TPLQDLEGHLARVSRVAFHPSGK-FLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQPDGSLAATGGLDS 325 (459)
T ss_pred cCCC-cchhhhhcchhhheeeeecCCCc-eeeecccccchhhcccccchhhHhhcccccccceeEecCCCceeeccCccc
Confidence 9975 46899999999999999999987 666999999999999999887666554 56799999999999999999999
Q ss_pred eEEEEECCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeC-CCCE
Q 003236 705 YISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHP-TFPS 782 (837)
Q Consensus 705 ~I~iwDl~s~~~~~~l~~h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fsp-dg~~ 782 (837)
.-+|||++++.++..+.+|...|.+|+|+|+|..|++|+ |++++|||++.. .++..+..|.+.|+.+.|+| .|.+
T Consensus 326 ~~RvWDlRtgr~im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r---~~ly~ipAH~nlVS~Vk~~p~~g~f 402 (459)
T KOG0272|consen 326 LGRVWDLRTGRCIMFLAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMR---SELYTIPAHSNLVSQVKYSPQEGYF 402 (459)
T ss_pred hhheeecccCcEEEEecccccceeeEeECCCceEEeecCCCCcEEEeeeccc---ccceecccccchhhheEecccCCeE
Confidence 999999999999999999999999999999999999999 999999999987 66899999999999999998 7889
Q ss_pred EEEEEcCCeEEEEECCCCcEE-EeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 003236 783 LLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 837 (837)
Q Consensus 783 L~sgs~dg~I~IwDl~s~~~~-~l~~h~~~V~sla~spdg~~LaSgs~DG~I~IWd 837 (837)
|++++.|++++||...++.++ .+.+|++.|.++++++|+.+|+|++.|.+|++|.
T Consensus 403 L~TasyD~t~kiWs~~~~~~~ksLaGHe~kV~s~Dis~d~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 403 LVTASYDNTVKIWSTRTWSPLKSLAGHEGKVISLDISPDSQAIATSSFDRTIKLWR 458 (459)
T ss_pred EEEcccCcceeeecCCCcccchhhcCCccceEEEEeccCCceEEEeccCceeeecc
Confidence 999999999999999999988 7889999999999999999999999999999995
|
|
| >KOG0286 consensus G-protein beta subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-38 Score=315.42 Aligned_cols=292 Identities=18% Similarity=0.321 Sum_probs=264.5
Q ss_pred eeeeEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEE
Q 003236 543 FTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVR 622 (837)
Q Consensus 543 ~~~~~~~~l~~H~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~ 622 (837)
..+..-++|++|.++|.++.|++|.++|++++.||.+.|||.-+...+..+.-...+|..++|+|.++++|.|+.|+...
T Consensus 43 i~~~~rr~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sPSg~~VAcGGLdN~Cs 122 (343)
T KOG0286|consen 43 IQMRTRRTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNFVACGGLDNKCS 122 (343)
T ss_pred eeeeeEEEecccccceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEecCceeEEEEEECCCCCeEEecCcCceeE
Confidence 44556689999999999999999999999999999999999999999999988999999999999999999999999999
Q ss_pred EEEcCCC--C---ceeEEeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeeEEec-CCCeeEEEEec-CCC
Q 003236 623 VWDTENP--D---YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQP-RLG 695 (837)
Q Consensus 623 IWDl~~~--~---~~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~-~~~i~sl~~sp-~g~ 695 (837)
||++.+. + ...+.+.+|.+.+.|+.|.+|+ .|++++.|.++.+||+++++.+..|.. .+.|.++.++| +++
T Consensus 123 iy~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD~--~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~n 200 (343)
T KOG0286|consen 123 IYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDDN--HILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLSLSPSDGN 200 (343)
T ss_pred EEecccccccccceeeeeecCccceeEEEEEcCCC--ceEecCCCceEEEEEcccceEEEEecCCcccEEEEecCCCCCC
Confidence 9999854 2 2357789999999999999864 355888899999999999999999985 45699999999 899
Q ss_pred EEEEEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEE
Q 003236 696 RILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSC 774 (837)
Q Consensus 696 ~llags~dg~I~iwDl~s~~~~~~l~~h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv 774 (837)
.+++|+.|+..++||++.+.++..|.+|+..|++|+|.|+|.-+++|+ |++.++||++.... ..+.........|+++
T Consensus 201 tFvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~-~a~ys~~~~~~gitSv 279 (343)
T KOG0286|consen 201 TFVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQE-LAVYSHDSIICGITSV 279 (343)
T ss_pred eEEecccccceeeeeccCcceeEeecccccccceEEEccCCCeeeecCCCceeEEEeecCCcE-EeeeccCcccCCceeE
Confidence 999999999999999999999999999999999999999999999999 88999999998732 2223333345679999
Q ss_pred EEeCCCCEEEEEEcCCeEEEEECCCCcEE-EeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 003236 775 VFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 837 (837)
Q Consensus 775 ~fspdg~~L~sgs~dg~I~IwDl~s~~~~-~l~~h~~~V~sla~spdg~~LaSgs~DG~I~IWd 837 (837)
+|+..|++|++|..|.++.+||.-.++.+ .+.+|++.|+++..+|||.-|+||+.|..|+||.
T Consensus 280 ~FS~SGRlLfagy~d~~c~vWDtlk~e~vg~L~GHeNRvScl~~s~DG~av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 280 AFSKSGRLLFAGYDDFTCNVWDTLKGERVGVLAGHENRVSCLGVSPDGMAVATGSWDSTLRIWA 343 (343)
T ss_pred EEcccccEEEeeecCCceeEeeccccceEEEeeccCCeeEEEEECCCCcEEEecchhHheeecC
Confidence 99999999999999999999998888777 8889999999999999999999999999999994
|
|
| >KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-38 Score=330.03 Aligned_cols=271 Identities=25% Similarity=0.370 Sum_probs=252.3
Q ss_pred cccCCCeEEcccCCCceEEeecCCCCCCCCccccccccCCCeeeeEEEEecCCCCCeEEEEEcCC--CCEEEEEECCCcE
Q 003236 502 LTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPD--GKLLATGGHDKKA 579 (837)
Q Consensus 502 l~~~~~~v~~Gs~D~~v~~w~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~H~~~V~sl~fSpd--g~~Lasgs~Dg~I 579 (837)
+...+..+++||.++.+++|.++.. ..+.+|++|++.|.++.|+|. +..||+|+.||+|
T Consensus 183 fS~ds~~laT~swsG~~kvW~~~~~-------------------~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtv 243 (459)
T KOG0272|consen 183 FSRDSKHLATGSWSGLVKVWSVPQC-------------------NLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTV 243 (459)
T ss_pred eecCCCeEEEeecCCceeEeecCCc-------------------ceeEEEeccccceeeEEEccCCCccceeeeccCCce
Confidence 3445578999999999999966543 457889999999999999996 6689999999999
Q ss_pred EEEeCCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeEEeeccccceEEEEEcCCCCeEEEEE
Q 003236 580 VLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSC 659 (837)
Q Consensus 580 ~VWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~sl~fspdg~~llasg 659 (837)
++|++++..++..+.+|...|..++|+|+|++|+|+|.|.+-++||+.++.. +....||...|.+|+|++||. ++++|
T Consensus 244 klw~~~~e~~l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~E-lL~QEGHs~~v~~iaf~~DGS-L~~tG 321 (459)
T KOG0272|consen 244 KLWKLSQETPLQDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSE-LLLQEGHSKGVFSIAFQPDGS-LAATG 321 (459)
T ss_pred eeeccCCCcchhhhhcchhhheeeeecCCCceeeecccccchhhcccccchh-hHhhcccccccceeEecCCCc-eeecc
Confidence 9999999999999999999999999999999999999999999999998664 777889999999999999987 88899
Q ss_pred eCCCcEEEEECCCCeeeeEEec-CCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEcC-CCC
Q 003236 660 DNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNT-SGE 737 (837)
Q Consensus 660 s~Dg~I~vwDl~t~~~i~~~~~-~~~i~sl~~sp~g~~llags~dg~I~iwDl~s~~~~~~l~~h~~~V~sl~~sp-dg~ 737 (837)
+.|..-+|||++++.++..+.. ...|..+.|+|+|..+++|+.|++++|||++...++.++.+|.+-|+.|+|+| .|.
T Consensus 322 GlD~~~RvWDlRtgr~im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ipAH~nlVS~Vk~~p~~g~ 401 (459)
T KOG0272|consen 322 GLDSLGRVWDLRTGRCIMFLAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTIPAHSNLVSQVKYSPQEGY 401 (459)
T ss_pred CccchhheeecccCcEEEEecccccceeeEeECCCceEEeecCCCCcEEEeeecccccceecccccchhhheEecccCCe
Confidence 9999999999999999999886 45799999999999999999999999999999999999999999999999998 788
Q ss_pred EEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEE
Q 003236 738 YLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWN 796 (837)
Q Consensus 738 ~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fspdg~~L~sgs~dg~I~IwD 796 (837)
+|++++ |++++||..++. .++..+.+|.+.|.++.+++++.+|++++.|.++++|.
T Consensus 402 fL~TasyD~t~kiWs~~~~---~~~ksLaGHe~kV~s~Dis~d~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 402 FLVTASYDNTVKIWSTRTW---SPLKSLAGHEGKVISLDISPDSQAIATSSFDRTIKLWR 458 (459)
T ss_pred EEEEcccCcceeeecCCCc---ccchhhcCCccceEEEEeccCCceEEEeccCceeeecc
Confidence 999999 999999999888 78999999999999999999999999999999999995
|
|
| >KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-36 Score=303.37 Aligned_cols=288 Identities=23% Similarity=0.432 Sum_probs=264.1
Q ss_pred EEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCC-CCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEE
Q 003236 547 EFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTE-SFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWD 625 (837)
Q Consensus 547 ~~~~l~~H~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~-t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWD 625 (837)
++-.+.+|.+.|+++.|+|+|.+||+|+.|..|.+|++. ..+...++++|.+.|..+.|.+|++.|++++.|++|+.||
T Consensus 39 p~m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD 118 (338)
T KOG0265|consen 39 PIMLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWD 118 (338)
T ss_pred hhhhcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccccceeeeccccceeEeeeeccCCCEEEEecCCceEEEEe
Confidence 345678999999999999999999999999999999954 4566678889999999999999999999999999999999
Q ss_pred cCCCCceeEEeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeeEEecCCCeeEEEEecCCCEEEEEEcCCe
Q 003236 626 TENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENY 705 (837)
Q Consensus 626 l~~~~~~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~~~~i~sl~~sp~g~~llags~dg~ 705 (837)
+++++. ++.+.+|...|++++....|..++++++.|+++++||+++..++.++.....++++.|...+..+++|+-|+.
T Consensus 119 ~~tG~~-~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~~kyqltAv~f~d~s~qv~sggIdn~ 197 (338)
T KOG0265|consen 119 AETGKR-IRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFENKYQLTAVGFKDTSDQVISGGIDND 197 (338)
T ss_pred ccccee-eehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhccccceeEEEEEecccccceeeccccCc
Confidence 999874 8889999999999998878899999999999999999999999999988899999999999999999999999
Q ss_pred EEEEECCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCc-eeEEEeecCC----CceEEEEEeCC
Q 003236 706 ISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKG-ECIHELSCTG----NKFHSCVFHPT 779 (837)
Q Consensus 706 I~iwDl~s~~~~~~l~~h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~-~~i~~~~~~~----~~I~sv~fspd 779 (837)
|++||++.....+.+.+|...|+.+..+++|.++.+-+ |.+|++||++..... .++..+.++. .....|+|+|+
T Consensus 198 ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~cswsp~ 277 (338)
T KOG0265|consen 198 IKVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWSPN 277 (338)
T ss_pred eeeeccccCcceEEeecccCceeeEEeccCCCccccccccceEEEEEecccCCCCceEEEeecchhhhhhhcceeeccCC
Confidence 99999999999999999999999999999999999988 999999999875432 4577776654 33577899999
Q ss_pred CCEEEEEEcCCeEEEEECCCCcEE-EeccCCCCeeEEEEeCCCCEEEEEECCCcEEE
Q 003236 780 FPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKI 835 (837)
Q Consensus 780 g~~L~sgs~dg~I~IwDl~s~~~~-~l~~h~~~V~sla~spdg~~LaSgs~DG~I~I 835 (837)
+.++.+|+.|..+++||.....++ .+.+|.+.|++++|+|...+|.+|+.|.+|++
T Consensus 278 ~~~i~ags~dr~vyvwd~~~r~~lyklpGh~gsvn~~~Fhp~e~iils~~sdk~i~l 334 (338)
T KOG0265|consen 278 GTKITAGSADRFVYVWDTTSRRILYKLPGHYGSVNEVDFHPTEPIILSCSSDKTIYL 334 (338)
T ss_pred CCccccccccceEEEeecccccEEEEcCCcceeEEEeeecCCCcEEEEeccCceeEe
Confidence 999999999999999999987666 88999999999999999999999999999976
|
|
| >KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-34 Score=308.35 Aligned_cols=339 Identities=19% Similarity=0.320 Sum_probs=284.1
Q ss_pred CCcccCCCccccCCCeEEcccCCCceEEeecCCC------------------------------CCCCCccccccccCCC
Q 003236 493 GSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDD------------------------------ADPRDRVGRSAEVGKG 542 (837)
Q Consensus 493 ~~~~~~~~~l~~~~~~v~~Gs~D~~v~~w~s~~~------------------------------~~~~~~~~~~~~~~~g 542 (837)
+.+......+.+...++++|...++|++|..... .++++++++.+.+++|
T Consensus 58 H~~~vtVAkySPsG~yiASGD~sG~vRIWdtt~~~hiLKnef~v~aG~I~Di~Wd~ds~RI~avGEGrerfg~~F~~DSG 137 (603)
T KOG0318|consen 58 HAHQVTVAKYSPSGFYIASGDVSGKVRIWDTTQKEHILKNEFQVLAGPIKDISWDFDSKRIAAVGEGRERFGHVFLWDSG 137 (603)
T ss_pred ccceeEEEEeCCCceEEeecCCcCcEEEEeccCcceeeeeeeeecccccccceeCCCCcEEEEEecCccceeEEEEecCC
Confidence 3444555556666779999999999999966542 2467889999999999
Q ss_pred eeeeEEEEecCCCCCeEEEEEcCCCC-EEEEEECCCcEEEEeCCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeE
Q 003236 543 FTFTEFQLIPASTSKVESCHFSPDGK-LLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTV 621 (837)
Q Consensus 543 ~~~~~~~~l~~H~~~V~sl~fSpdg~-~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I 621 (837)
....+ +.+|...|.+|+|-|... .+++|++|++|.+|+-...+...++..|...|.|++|+|||+++++++.||+|
T Consensus 138 ~SvGe---i~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRysPDG~~Fat~gsDgki 214 (603)
T KOG0318|consen 138 NSVGE---ITGHSRRINSVDFKPSRPFRIATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRYSPDGSRFATAGSDGKI 214 (603)
T ss_pred Cccce---eeccceeEeeeeccCCCceEEEeccCCCeEEEeeCCCeeeeecccccccceeeEEECCCCCeEEEecCCccE
Confidence 87655 569999999999999776 59999999999999999999999999999999999999999999999999999
Q ss_pred EEEEcCCCCceeEEee---ccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeeEEec-----------------
Q 003236 622 RVWDTENPDYSLRTFT---GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC----------------- 681 (837)
Q Consensus 622 ~IWDl~~~~~~~~~~~---~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~----------------- 681 (837)
.|||-.+++. +..+. +|.+.|.+++|+||+..++ +++.|.+++|||+.+.+++.++..
T Consensus 215 ~iyDGktge~-vg~l~~~~aHkGsIfalsWsPDs~~~~-T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~ 292 (603)
T KOG0318|consen 215 YIYDGKTGEK-VGELEDSDAHKGSIFALSWSPDSTQFL-TVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDH 292 (603)
T ss_pred EEEcCCCccE-EEEecCCCCccccEEEEEECCCCceEE-EecCCceEEEEEeeccceEEEeecCCchhceEEEEEEeCCe
Confidence 9999998775 66665 8999999999999987655 899999999999998776653321
Q ss_pred ---------------------------CCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEE-----------Ec--
Q 003236 682 ---------------------------QSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLK-----------LQ-- 721 (837)
Q Consensus 682 ---------------------------~~~i~sl~~sp~g~~llags~dg~I~iwDl~s~~~~~~-----------l~-- 721 (837)
...|+++..++++.+|++++.||.|.-||..++..-.. +.
T Consensus 293 lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~ 372 (603)
T KOG0318|consen 293 LITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAAS 372 (603)
T ss_pred EEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEEeeccCceEEEEecCCccccccccccccceEEEEeec
Confidence 23478999999999999999999999999876432100 00
Q ss_pred -------------------------CC-------------------------------------------CCCEEEEEEc
Q 003236 722 -------------------------GH-------------------------------------------KNQVHSVCWN 733 (837)
Q Consensus 722 -------------------------~h-------------------------------------------~~~V~sl~~s 733 (837)
.+ .....+++++
T Consensus 373 ~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~ 452 (603)
T KOG0318|consen 373 ESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVS 452 (603)
T ss_pred CCCcEEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEEc
Confidence 00 0123568889
Q ss_pred CCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE--EeccCCC
Q 003236 734 TSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL--TLSAHDK 810 (837)
Q Consensus 734 pdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fspdg~~L~sgs~dg~I~IwDl~s~~~~--~l~~h~~ 810 (837)
|++.++++|+ |+.|+||.+..... ........|...|++++|+||+.+|+++...+.|.+||+.+.+.. .+.-|..
T Consensus 453 ~~~~~vaVGG~Dgkvhvysl~g~~l-~ee~~~~~h~a~iT~vaySpd~~yla~~Da~rkvv~yd~~s~~~~~~~w~FHta 531 (603)
T KOG0318|consen 453 PDGSEVAVGGQDGKVHVYSLSGDEL-KEEAKLLEHRAAITDVAYSPDGAYLAAGDASRKVVLYDVASREVKTNRWAFHTA 531 (603)
T ss_pred CCCCEEEEecccceEEEEEecCCcc-cceeeeecccCCceEEEECCCCcEEEEeccCCcEEEEEcccCceecceeeeeee
Confidence 9999999999 99999999987643 333455678999999999999999999999999999999998876 5557999
Q ss_pred CeeEEEEeCCCCEEEEEECCCcEEEeC
Q 003236 811 LVSSLAASTVNGMVASASHDKCVKIWK 837 (837)
Q Consensus 811 ~V~sla~spdg~~LaSgs~DG~I~IWd 837 (837)
.|.+++|+|+..++|||+-|-.|.||+
T Consensus 532 kI~~~aWsP~n~~vATGSlDt~Viiys 558 (603)
T KOG0318|consen 532 KINCVAWSPNNKLVATGSLDTNVIIYS 558 (603)
T ss_pred eEEEEEeCCCceEEEeccccceEEEEE
Confidence 999999999999999999999999995
|
|
| >KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-34 Score=288.20 Aligned_cols=283 Identities=20% Similarity=0.349 Sum_probs=244.6
Q ss_pred EEEEecCCCCCeEEEEEcCC-CCEEEEEECCCcEEEEeCC-----CCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCe
Q 003236 547 EFQLIPASTSKVESCHFSPD-GKLLATGGHDKKAVLWCTE-----SFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRT 620 (837)
Q Consensus 547 ~~~~l~~H~~~V~sl~fSpd-g~~Lasgs~Dg~I~VWd~~-----t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~ 620 (837)
...++++|++.|+.++..+. ...|++++.|.++.+|++. .|...+.+.+|...|..+..++||.+.++++.|++
T Consensus 7 l~~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~~ 86 (315)
T KOG0279|consen 7 LRGTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSASWDGT 86 (315)
T ss_pred eeeeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCCceEEeccccce
Confidence 45678999999999999986 5589999999999999764 47778999999999999999999999999999999
Q ss_pred EEEEEcCCCCceeEEeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeeEEec---CCCeeEEEEecC--CC
Q 003236 621 VRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC---QSGATQMRFQPR--LG 695 (837)
Q Consensus 621 I~IWDl~~~~~~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~---~~~i~sl~~sp~--g~ 695 (837)
+++||+.+++ ..+.|.+|...|.+++|++|+. -+++|+.|.+|++|++.. .+..++.. ..-|.|++|+|+ ..
T Consensus 87 lrlWDl~~g~-~t~~f~GH~~dVlsva~s~dn~-qivSGSrDkTiklwnt~g-~ck~t~~~~~~~~WVscvrfsP~~~~p 163 (315)
T KOG0279|consen 87 LRLWDLATGE-STRRFVGHTKDVLSVAFSTDNR-QIVSGSRDKTIKLWNTLG-VCKYTIHEDSHREWVSCVRFSPNESNP 163 (315)
T ss_pred EEEEEecCCc-EEEEEEecCCceEEEEecCCCc-eeecCCCcceeeeeeecc-cEEEEEecCCCcCcEEEEEEcCCCCCc
Confidence 9999999874 6899999999999999999966 566999999999999984 44444443 346999999998 67
Q ss_pred EEEEEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEE
Q 003236 696 RILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSC 774 (837)
Q Consensus 696 ~llags~dg~I~iwDl~s~~~~~~l~~h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv 774 (837)
+|+.++.|+.|++||+++.+....+.+|.+.++.++++|||.++++|+ ||.+.+||++.+ +++..+. +...|.++
T Consensus 164 ~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~---k~lysl~-a~~~v~sl 239 (315)
T KOG0279|consen 164 IIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEG---KNLYSLE-AFDIVNSL 239 (315)
T ss_pred EEEEccCCceEEEEccCCcchhhccccccccEEEEEECCCCCEEecCCCCceEEEEEccCC---ceeEecc-CCCeEeeE
Confidence 899999999999999999999999999999999999999999999999 999999999988 5565554 67889999
Q ss_pred EEeCCCCEEEEEEcCCeEEEEECCCCcEE---E--eccC-----CCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 003236 775 VFHPTFPSLLVIGCYETLELWNMTENKTL---T--LSAH-----DKLVSSLAASTVNGMVASASHDKCVKIWK 837 (837)
Q Consensus 775 ~fspdg~~L~sgs~dg~I~IwDl~s~~~~---~--l~~h-----~~~V~sla~spdg~~LaSgs~DG~I~IWd 837 (837)
+|+|+...|+.+. +..|+|||+.++.++ . +.+. .-...+++|++||..|++|-.|+.|++|.
T Consensus 240 ~fspnrywL~~at-~~sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaws~dG~tLf~g~td~~irv~q 311 (315)
T KOG0279|consen 240 CFSPNRYWLCAAT-ATSIKIWDLESKAVVEELKLDGIGPSSKAGDPICLSLAWSADGQTLFAGYTDNVIRVWQ 311 (315)
T ss_pred EecCCceeEeecc-CCceEEEeccchhhhhhccccccccccccCCcEEEEEEEcCCCcEEEeeecCCcEEEEE
Confidence 9999976555554 446999999998876 1 1122 23356789999999999999999999994
|
|
| >KOG0266 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-33 Score=324.17 Aligned_cols=286 Identities=30% Similarity=0.531 Sum_probs=257.3
Q ss_pred EEEecC-CCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCe--EEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEE
Q 003236 548 FQLIPA-STSKVESCHFSPDGKLLATGGHDKKAVLWCTESFT--VKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVW 624 (837)
Q Consensus 548 ~~~l~~-H~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~--~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IW 624 (837)
...+.. |...|+|+.|+++|++|++++.|+.+++|+..+.+ ....+.+|...|.+++|+|+++++++++.|++|+||
T Consensus 151 ~~~~~~~~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriw 230 (456)
T KOG0266|consen 151 EQTLAGHECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIW 230 (456)
T ss_pred eeeecccccCceEEEEEcCCCCeEEEccCCCcEEEeecccccchhhccccccccceeeeEECCCCcEEEEecCCceEEEe
Confidence 455544 48899999999999999999999999999998777 777888999999999999999999999999999999
Q ss_pred EcCCCCceeEEeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeeEEecC-CCeeEEEEecCCCEEEEEEcC
Q 003236 625 DTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ-SGATQMRFQPRLGRILAAAIE 703 (837)
Q Consensus 625 Dl~~~~~~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~~-~~i~sl~~sp~g~~llags~d 703 (837)
|+......++++.+|...|++++|+|++ .++++|+.|++|+|||+++++++..+..+ ..|++++|++++..|++++.|
T Consensus 231 d~~~~~~~~~~l~gH~~~v~~~~f~p~g-~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~d~~~l~s~s~d 309 (456)
T KOG0266|consen 231 DLKDDGRNLKTLKGHSTYVTSVAFSPDG-NLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISGLAFSPDGNLLVSASYD 309 (456)
T ss_pred eccCCCeEEEEecCCCCceEEEEecCCC-CEEEEecCCCcEEEEeccCCeEEEeeeccCCceEEEEECCCCCEEEEcCCC
Confidence 9966666789999999999999999998 78889999999999999999999999864 579999999999999999999
Q ss_pred CeEEEEECCCCe--EEEEEcCCCCC--EEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCc---eEEEE
Q 003236 704 NYISILDVETQV--CRLKLQGHKNQ--VHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNK---FHSCV 775 (837)
Q Consensus 704 g~I~iwDl~s~~--~~~~l~~h~~~--V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~---I~sv~ 775 (837)
+.|+|||+.++. ++..+.++... +++++|+|++.+|+++. |+.+++||+..+ .++..+.+|... +.+..
T Consensus 310 ~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~---~~~~~~~~~~~~~~~~~~~~ 386 (456)
T KOG0266|consen 310 GTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSG---KSVGTYTGHSNLVRCIFSPT 386 (456)
T ss_pred ccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCC---cceeeecccCCcceeEeccc
Confidence 999999999998 66777777666 99999999999999999 889999999988 666666666654 44556
Q ss_pred EeCCCCEEEEEEcCCeEEEEECCCCcEE-EeccC-CCCeeEEEEeCCCCEEEEEE--CCCcEEEeC
Q 003236 776 FHPTFPSLLVIGCYETLELWNMTENKTL-TLSAH-DKLVSSLAASTVNGMVASAS--HDKCVKIWK 837 (837)
Q Consensus 776 fspdg~~L~sgs~dg~I~IwDl~s~~~~-~l~~h-~~~V~sla~spdg~~LaSgs--~DG~I~IWd 837 (837)
+++.+.++++++.|+.|++||+.++..+ .+.+| ...|..+.|++...++++++ .|+.|++|+
T Consensus 387 ~~~~~~~i~sg~~d~~v~~~~~~s~~~~~~l~~h~~~~~~~~~~~~~~~~~~s~s~~~d~~~~~w~ 452 (456)
T KOG0266|consen 387 LSTGGKLIYSGSEDGSVYVWDSSSGGILQRLEGHSKAAVSDLSSHPTENLIASSSFEGDGLIRLWK 452 (456)
T ss_pred ccCCCCeEEEEeCCceEEEEeCCccchhhhhcCCCCCceeccccCCCcCeeeecCcCCCceEEEec
Confidence 6889999999999999999999987766 77889 89999999999999999998 789999995
|
|
| >cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-33 Score=297.01 Aligned_cols=284 Identities=32% Similarity=0.539 Sum_probs=254.9
Q ss_pred EEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCC
Q 003236 549 QLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTEN 628 (837)
Q Consensus 549 ~~l~~H~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~ 628 (837)
..+.+|.++|++++|+|++++|++++.||.|++|++.+++....+..|...+.++.|++++++|++++.||.|++||+.+
T Consensus 3 ~~~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~ 82 (289)
T cd00200 3 RTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLET 82 (289)
T ss_pred hHhcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCc
Confidence 45779999999999999999999999999999999999888888889999999999999999999999999999999997
Q ss_pred CCceeEEeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeeEEe-cCCCeeEEEEecCCCEEEEEEcCCeEE
Q 003236 629 PDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK-CQSGATQMRFQPRLGRILAAAIENYIS 707 (837)
Q Consensus 629 ~~~~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~-~~~~i~sl~~sp~g~~llags~dg~I~ 707 (837)
.+ .+..+..|...|.++.|++++ .++++++.++.|++||+.+++....+. +...+.++.|+|++.++++++.++.|+
T Consensus 83 ~~-~~~~~~~~~~~i~~~~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~ 160 (289)
T cd00200 83 GE-CVRTLTGHTSYVSSVAFSPDG-RILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIK 160 (289)
T ss_pred cc-ceEEEeccCCcEEEEEEcCCC-CEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcCcCCEEEEEcCCCcEE
Confidence 54 366777888899999999984 477777779999999999888888777 455799999999988887777799999
Q ss_pred EEECCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEE
Q 003236 708 ILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVI 786 (837)
Q Consensus 708 iwDl~s~~~~~~l~~h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fspdg~~L~sg 786 (837)
+||+++++.+..+..|...|.+++|+|++..+++++ |+.|++||++.+ ..+..+..+...+.++.|++++.+++++
T Consensus 161 i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~---~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 237 (289)
T cd00200 161 LWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTG---KCLGTLRGHENGVNSVAFSPDGYLLASG 237 (289)
T ss_pred EEEccccccceeEecCccccceEEECCCcCEEEEecCCCcEEEEECCCC---ceecchhhcCCceEEEEEcCCCcEEEEE
Confidence 999999988888888999999999999998888888 999999999876 5666676778899999999998877777
Q ss_pred EcCCeEEEEECCCCcEE-EeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 003236 787 GCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 837 (837)
Q Consensus 787 s~dg~I~IwDl~s~~~~-~l~~h~~~V~sla~spdg~~LaSgs~DG~I~IWd 837 (837)
+.++.|++||+.+++.. .+..|...|.+++|++++.+|++++.||.|+|||
T Consensus 238 ~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 238 SEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLASGSADGTIRIWD 289 (289)
T ss_pred cCCCcEEEEEcCCceeEEEccccCCcEEEEEECCCCCEEEEecCCCeEEecC
Confidence 77999999999987766 5668889999999999999999999999999997
|
|
| >KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-34 Score=283.86 Aligned_cols=268 Identities=19% Similarity=0.397 Sum_probs=244.0
Q ss_pred CEEEEEECCCcEEEEeCCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCc-eeEEeeccccceEEE
Q 003236 568 KLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDY-SLRTFTGHSTTVMSL 646 (837)
Q Consensus 568 ~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~~~~-~~~~~~~h~~~V~sl 646 (837)
-+||+++.|.+|++|...+|.+..++....+.|+.+...|+++.||+++.- .|++||+.+++. ++.++.+|...|+++
T Consensus 11 viLvsA~YDhTIRfWqa~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~q-hvRlyD~~S~np~Pv~t~e~h~kNVtaV 89 (311)
T KOG0315|consen 11 VILVSAGYDHTIRFWQALTGICSRTIQHPDSQVNRLEITPDKKDLAAAGNQ-HVRLYDLNSNNPNPVATFEGHTKNVTAV 89 (311)
T ss_pred eEEEeccCcceeeeeehhcCeEEEEEecCccceeeEEEcCCcchhhhccCC-eeEEEEccCCCCCceeEEeccCCceEEE
Confidence 489999999999999999999999999888899999999999999998755 699999998765 889999999999999
Q ss_pred EEcCCCCeEEEEEeCCCcEEEEECCCCeeeeEEecCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEcC-CCC
Q 003236 647 DFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQG-HKN 725 (837)
Q Consensus 647 ~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~~~~i~sl~~sp~g~~llags~dg~I~iwDl~s~~~~~~l~~-h~~ 725 (837)
.|..+|. .+++|++||+++|||++...+-+.+.+..+|+++..+|+...|+++..+|.|++||+....+...+.. ...
T Consensus 90 gF~~dgr-WMyTgseDgt~kIWdlR~~~~qR~~~~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~liPe~~~ 168 (311)
T KOG0315|consen 90 GFQCDGR-WMYTGSEDGTVKIWDLRSLSCQRNYQHNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHELIPEDDT 168 (311)
T ss_pred EEeecCe-EEEecCCCceEEEEeccCcccchhccCCCCcceEEecCCcceEEeecCCCcEEEEEccCCccccccCCCCCc
Confidence 9999977 56699999999999999999999999999999999999999999999999999999998877666543 456
Q ss_pred CEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCC---CceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCC-
Q 003236 726 QVHSVCWNTSGEYLASVS-DELVRVWSIGSGS---KGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTEN- 800 (837)
Q Consensus 726 ~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~---~~~~i~~~~~~~~~I~sv~fspdg~~L~sgs~dg~I~IwDl~s~- 800 (837)
.|.++...|||.+|+.+. .|..++|++-... ...++..+..|...+..|.+|||+++|++++.|.+++||+.++.
T Consensus 169 ~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~~ 248 (311)
T KOG0315|consen 169 SIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSDKTVKIWNTDDFF 248 (311)
T ss_pred ceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEeecCCceEEEEecCCce
Confidence 899999999999999998 8899999997643 24567788999999999999999999999999999999999887
Q ss_pred cE-EEeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 003236 801 KT-LTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 837 (837)
Q Consensus 801 ~~-~~l~~h~~~V~sla~spdg~~LaSgs~DG~I~IWd 837 (837)
+. +.+.+|...++.++||.||.||+||+.|+.+++|+
T Consensus 249 kle~~l~gh~rWvWdc~FS~dg~YlvTassd~~~rlW~ 286 (311)
T KOG0315|consen 249 KLELVLTGHQRWVWDCAFSADGEYLVTASSDHTARLWD 286 (311)
T ss_pred eeEEEeecCCceEEeeeeccCccEEEecCCCCceeecc
Confidence 22 26789999999999999999999999999999997
|
|
| >KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-34 Score=297.54 Aligned_cols=289 Identities=20% Similarity=0.382 Sum_probs=265.4
Q ss_pred eeeeEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEE
Q 003236 543 FTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVR 622 (837)
Q Consensus 543 ~~~~~~~~l~~H~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~ 622 (837)
.+++..+++.+|.+.|.|+++.|-..+|++|+.|++|+|||+.++++..++.+|...|..+++++-..||++++.|+.|+
T Consensus 139 apwKl~rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VK 218 (460)
T KOG0285|consen 139 APWKLYRVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVK 218 (460)
T ss_pred CcceehhhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEecCCCeeE
Confidence 45677889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEcCCCCceeEEeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeeEEe-cCCCeeEEEEecCCCEEEEEE
Q 003236 623 VWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK-CQSGATQMRFQPRLGRILAAA 701 (837)
Q Consensus 623 IWDl~~~~~~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~-~~~~i~sl~~sp~g~~llags 701 (837)
.||++.++. ++.+.+|-..|.|++.+|.-+ ++++|+.|.+++|||+++...+.++. +...|..+.+.|.+..+++|+
T Consensus 219 CwDLe~nkv-IR~YhGHlS~V~~L~lhPTld-vl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpqvit~S 296 (460)
T KOG0285|consen 219 CWDLEYNKV-IRHYHGHLSGVYCLDLHPTLD-VLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTDPQVITGS 296 (460)
T ss_pred EEechhhhh-HHHhccccceeEEEeccccce-eEEecCCcceEEEeeecccceEEEecCCCCcceeEEeecCCCceEEec
Confidence 999998764 899999999999999999855 77799999999999999999999988 467799999999999999999
Q ss_pred cCCeEEEEECCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCC
Q 003236 702 IENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFP 781 (837)
Q Consensus 702 ~dg~I~iwDl~s~~~~~~l~~h~~~V~sl~~spdg~~LasgsDg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fspdg~ 781 (837)
.|++|++||++.++....+..|...|.+++.+|....+++++.+.|+-|++..+ ..+..+.+|...|.+++...|+
T Consensus 297 ~D~tvrlWDl~agkt~~tlt~hkksvral~lhP~e~~fASas~dnik~w~~p~g---~f~~nlsgh~~iintl~~nsD~- 372 (460)
T KOG0285|consen 297 HDSTVRLWDLRAGKTMITLTHHKKSVRALCLHPKENLFASASPDNIKQWKLPEG---EFLQNLSGHNAIINTLSVNSDG- 372 (460)
T ss_pred CCceEEEeeeccCceeEeeecccceeeEEecCCchhhhhccCCccceeccCCcc---chhhccccccceeeeeeeccCc-
Confidence 999999999999999999999999999999999999999999777999999888 6777789999999999998887
Q ss_pred EEEEEEcCCeEEEEECCCCcEEEe---------ccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 003236 782 SLLVIGCYETLELWNMTENKTLTL---------SAHDKLVSSLAASTVNGMVASASHDKCVKIWK 837 (837)
Q Consensus 782 ~L~sgs~dg~I~IwDl~s~~~~~l---------~~h~~~V~sla~spdg~~LaSgs~DG~I~IWd 837 (837)
++++|+.+|.|.+||.+++..... ...+..|.+.+|...|..|++|..|.+|++|+
T Consensus 373 v~~~G~dng~~~fwdwksg~nyQ~~~t~vqpGSl~sEagI~as~fDktg~rlit~eadKtIk~~k 437 (460)
T KOG0285|consen 373 VLVSGGDNGSIMFWDWKSGHNYQRGQTIVQPGSLESEAGIFASCFDKTGSRLITGEADKTIKMYK 437 (460)
T ss_pred eEEEcCCceEEEEEecCcCcccccccccccCCccccccceeEEeecccCceEEeccCCcceEEEe
Confidence 588999999999999999875521 12356799999999999999999999999995
|
|
| >KOG0295 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-35 Score=301.70 Aligned_cols=289 Identities=26% Similarity=0.464 Sum_probs=269.9
Q ss_pred eeEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEE
Q 003236 545 FTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVW 624 (837)
Q Consensus 545 ~~~~~~l~~H~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IW 624 (837)
..+...+.+|..+|+.+-|+|+-.++|++++|++|++||..++++...+++|.+.|.+|+|+..|++|++++.|=.+.+|
T Consensus 98 p~l~~~l~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LW 177 (406)
T KOG0295|consen 98 PNLVQKLAGHRSSVTRVIFHPSEALVVSASEDATIKVFDTETGELERSLRGHTDSVFDISFDASGKYLATCSSDLSAKLW 177 (406)
T ss_pred CCchhhhhccccceeeeeeccCceEEEEecCCceEEEEEccchhhhhhhhccccceeEEEEecCccEEEecCCccchhhe
Confidence 34566778899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EcCCCCceeEEeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeeEEecCC-CeeEEEEecCCCEEEEEEcC
Q 003236 625 DTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQS-GATQMRFQPRLGRILAAAIE 703 (837)
Q Consensus 625 Dl~~~~~~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~~~-~i~sl~~sp~g~~llags~d 703 (837)
|..+-..+++...+|...|.+++|-|.|+ .+++|+.|.+|+.|++.++-|+.++..+. -+..++.+.||..+++++.|
T Consensus 178 d~~~~~~c~ks~~gh~h~vS~V~f~P~gd-~ilS~srD~tik~We~~tg~cv~t~~~h~ewvr~v~v~~DGti~As~s~d 256 (406)
T KOG0295|consen 178 DFDTFFRCIKSLIGHEHGVSSVFFLPLGD-HILSCSRDNTIKAWECDTGYCVKTFPGHSEWVRMVRVNQDGTIIASCSND 256 (406)
T ss_pred eHHHHHHHHHHhcCcccceeeEEEEecCC-eeeecccccceeEEecccceeEEeccCchHhEEEEEecCCeeEEEecCCC
Confidence 99986667888999999999999999986 55599999999999999999999998754 48889999999999999999
Q ss_pred CeEEEEECCCCeEEEEEcCCCCCEEEEEEcCC---------------CCEEEEEe-CCeEEEEEcCCCCCceeEEEeecC
Q 003236 704 NYISILDVETQVCRLKLQGHKNQVHSVCWNTS---------------GEYLASVS-DELVRVWSIGSGSKGECIHELSCT 767 (837)
Q Consensus 704 g~I~iwDl~s~~~~~~l~~h~~~V~sl~~spd---------------g~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~ 767 (837)
.+|++|-+.++.+...+.+|+.+|.|++|-|. +.++++++ |++|++||+.++ .|+.++.+|
T Consensus 257 qtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg---~cL~tL~gh 333 (406)
T KOG0295|consen 257 QTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTG---MCLFTLVGH 333 (406)
T ss_pred ceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCC---eEEEEEecc
Confidence 99999999999999999999999999999762 24888899 999999999999 899999999
Q ss_pred CCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE-EeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 003236 768 GNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 837 (837)
Q Consensus 768 ~~~I~sv~fspdg~~L~sgs~dg~I~IwDl~s~~~~-~l~~h~~~V~sla~spdg~~LaSgs~DG~I~IWd 837 (837)
.+.|..++|+|.|+||+++..|++|++||++++.++ .+..|...|++++|+.+..+++||+-|-++++|.
T Consensus 334 dnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah~hfvt~lDfh~~~p~VvTGsVdqt~KvwE 404 (406)
T KOG0295|consen 334 DNWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLEAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE 404 (406)
T ss_pred cceeeeeEEcCCCeEEEEEecCCcEEEEEeccceeeeccCCCcceeEEEecCCCCceEEeccccceeeeee
Confidence 999999999999999999999999999999999988 7789999999999999999999999999999995
|
|
| >KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-33 Score=300.04 Aligned_cols=293 Identities=20% Similarity=0.338 Sum_probs=248.5
Q ss_pred CCeeeeEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEec---cCCCCeEEEEEcCCCCEEEEEeC
Q 003236 541 KGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLE---EHTQWITDVRFSPSLSRLATSSA 617 (837)
Q Consensus 541 ~g~~~~~~~~l~~H~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~---~h~~~I~~l~fspdg~~Latgs~ 617 (837)
.|.+|+.-.+++.|..-|.|+.|+|||+++|+++.||+|.|||-.+++.+..+. +|.+.|.++.|+||++.|+|++.
T Consensus 176 eGPPFKFk~s~r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~Sa 255 (603)
T KOG0318|consen 176 EGPPFKFKSSFREHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSA 255 (603)
T ss_pred eCCCeeeeecccccccceeeEEECCCCCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEecC
Confidence 567778888999999999999999999999999999999999999999999998 89999999999999999999999
Q ss_pred CCeEEEEEcCCCCc------------------------------------------eeEEeeccccceEEEEEcCCCCeE
Q 003236 618 DRTVRVWDTENPDY------------------------------------------SLRTFTGHSTTVMSLDFHPSKEDL 655 (837)
Q Consensus 618 Dg~I~IWDl~~~~~------------------------------------------~~~~~~~h~~~V~sl~fspdg~~l 655 (837)
|.+++|||+.+.+. +...+.+|...|+++..++++. .
T Consensus 256 Dkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~-~ 334 (603)
T KOG0318|consen 256 DKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGK-T 334 (603)
T ss_pred CceEEEEEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCC-E
Confidence 99999999985431 2345668999999999999985 5
Q ss_pred EEEEeCCCcEEEEECCCCeeee-------------------------------EEec-----------------------
Q 003236 656 LCSCDNNSEIRYWSINNGSCAG-------------------------------VFKC----------------------- 681 (837)
Q Consensus 656 lasgs~Dg~I~vwDl~t~~~i~-------------------------------~~~~----------------------- 681 (837)
|++|+.||.|.-||+.++..-+ .+..
T Consensus 335 i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~ 414 (603)
T KOG0318|consen 335 IYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVL 414 (603)
T ss_pred EEeeccCceEEEEecCCccccccccccccceEEEEeecCCCcEEEEecCCeEEEEecccCcccccceeecCCCceeEEEc
Confidence 6699999999999987653211 0000
Q ss_pred ----------------------------CCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCe--EEEEEcCCCCCEEEEE
Q 003236 682 ----------------------------QSGATQMRFQPRLGRILAAAIENYISILDVETQV--CRLKLQGHKNQVHSVC 731 (837)
Q Consensus 682 ----------------------------~~~i~sl~~sp~g~~llags~dg~I~iwDl~s~~--~~~~l~~h~~~V~sl~ 731 (837)
.-...+++++|++..+++|+.|+.|+||.+.... ....+..|..+|++++
T Consensus 415 ~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~va 494 (603)
T KOG0318|consen 415 SDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGSEVAVGGQDGKVHVYSLSGDELKEEAKLLEHRAAITDVA 494 (603)
T ss_pred CCCCEEEEEecCcEEEEecCCcceeeccccccceEEEcCCCCEEEEecccceEEEEEecCCcccceeeeecccCCceEEE
Confidence 0113578889999999999999999999998754 3345567999999999
Q ss_pred EcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcE--EEeccC
Q 003236 732 WNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKT--LTLSAH 808 (837)
Q Consensus 732 ~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fspdg~~L~sgs~dg~I~IwDl~s~~~--~~l~~h 808 (837)
|+||+.||++|. .+.|.+||+.+... .......|...|.+++|+|+..++++|+-|..|.||+++.... ....+|
T Consensus 495 ySpd~~yla~~Da~rkvv~yd~~s~~~--~~~~w~FHtakI~~~aWsP~n~~vATGSlDt~Viiysv~kP~~~i~iknAH 572 (603)
T KOG0318|consen 495 YSPDGAYLAAGDASRKVVLYDVASREV--KTNRWAFHTAKINCVAWSPNNKLVATGSLDTNVIIYSVKKPAKHIIIKNAH 572 (603)
T ss_pred ECCCCcEEEEeccCCcEEEEEcccCce--ecceeeeeeeeEEEEEeCCCceEEEeccccceEEEEEccChhhheEecccc
Confidence 999999999999 99999999998743 3334455889999999999999999999999999999976543 255689
Q ss_pred CCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 003236 809 DKLVSSLAASTVNGMVASASHDKCVKIWK 837 (837)
Q Consensus 809 ~~~V~sla~spdg~~LaSgs~DG~I~IWd 837 (837)
...|+.+.|- |...|++.+.|..|++|.
T Consensus 573 ~~gVn~v~wl-de~tvvSsG~Da~iK~W~ 600 (603)
T KOG0318|consen 573 LGGVNSVAWL-DESTVVSSGQDANIKVWN 600 (603)
T ss_pred ccCceeEEEe-cCceEEeccCcceeEEec
Confidence 9899999996 456788999999999995
|
|
| >KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-33 Score=274.46 Aligned_cols=289 Identities=21% Similarity=0.313 Sum_probs=251.4
Q ss_pred CCCeEEcccCCCceEEeecCCCCCCCCccccccccCCCeeeeEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEeC
Q 003236 505 MDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCT 584 (837)
Q Consensus 505 ~~~~v~~Gs~D~~v~~w~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~H~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~ 584 (837)
..-++++++.|-+|+.|....+ .+.+++.-..+.|..+.+.||+++||+++. -.|++||+
T Consensus 9 ~~viLvsA~YDhTIRfWqa~tG-------------------~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~-qhvRlyD~ 68 (311)
T KOG0315|consen 9 DPVILVSAGYDHTIRFWQALTG-------------------ICSRTIQHPDSQVNRLEITPDKKDLAAAGN-QHVRLYDL 68 (311)
T ss_pred CceEEEeccCcceeeeeehhcC-------------------eEEEEEecCccceeeEEEcCCcchhhhccC-CeeEEEEc
Confidence 4568899999999999955433 467778778888999999999999999885 57999999
Q ss_pred CCCe--EEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeEEeeccccceEEEEEcCCCCeEEEEEeCC
Q 003236 585 ESFT--VKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN 662 (837)
Q Consensus 585 ~t~~--~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~sl~fspdg~~llasgs~D 662 (837)
.+.+ ++.++.+|+..|+++.|..+|+.++||++||+++|||++... ......|..+|+++..+|+-..+| +|+.+
T Consensus 69 ~S~np~Pv~t~e~h~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~--~qR~~~~~spVn~vvlhpnQteLi-s~dqs 145 (311)
T KOG0315|consen 69 NSNNPNPVATFEGHTKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLS--CQRNYQHNSPVNTVVLHPNQTELI-SGDQS 145 (311)
T ss_pred cCCCCCceeEEeccCCceEEEEEeecCeEEEecCCCceEEEEeccCcc--cchhccCCCCcceEEecCCcceEE-eecCC
Confidence 8765 589999999999999999999999999999999999999843 444555889999999999976555 99999
Q ss_pred CcEEEEECCCCeeeeEEec--CCCeeEEEEecCCCEEEEEEcCCeEEEEECCCC------eEEEEEcCCCCCEEEEEEcC
Q 003236 663 SEIRYWSINNGSCAGVFKC--QSGATQMRFQPRLGRILAAAIENYISILDVETQ------VCRLKLQGHKNQVHSVCWNT 734 (837)
Q Consensus 663 g~I~vwDl~t~~~i~~~~~--~~~i~sl~~sp~g~~llags~dg~I~iwDl~s~------~~~~~l~~h~~~V~sl~~sp 734 (837)
|.|++||+.+..+...+.. ...+.++.+.|+|..++++...|..++|++-.. +++..++.|...+..+.+||
T Consensus 146 g~irvWDl~~~~c~~~liPe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSP 225 (311)
T KOG0315|consen 146 GNIRVWDLGENSCTHELIPEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSP 225 (311)
T ss_pred CcEEEEEccCCccccccCCCCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECC
Confidence 9999999998877666543 456899999999999999999999999998653 56677889999999999999
Q ss_pred CCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE-EeccCCCCe
Q 003236 735 SGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLV 812 (837)
Q Consensus 735 dg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fspdg~~L~sgs~dg~I~IwDl~s~~~~-~l~~h~~~V 812 (837)
|+++|++++ |.+++||+.++. .+.-..+.+|...+..|+||.|+.||++++.|+.+++||+..++.+ ...+|....
T Consensus 226 d~k~lat~ssdktv~iwn~~~~--~kle~~l~gh~rWvWdc~FS~dg~YlvTassd~~~rlW~~~~~k~v~qy~gh~K~~ 303 (311)
T KOG0315|consen 226 DVKYLATCSSDKTVKIWNTDDF--FKLELVLTGHQRWVWDCAFSADGEYLVTASSDHTARLWDLSAGKEVRQYQGHHKAA 303 (311)
T ss_pred CCcEEEeecCCceEEEEecCCc--eeeEEEeecCCceEEeeeeccCccEEEecCCCCceeecccccCceeeecCCccccc
Confidence 999999999 999999999876 3555677888999999999999999999999999999999999987 667888888
Q ss_pred eEEEEe
Q 003236 813 SSLAAS 818 (837)
Q Consensus 813 ~sla~s 818 (837)
.|++..
T Consensus 304 vc~~ln 309 (311)
T KOG0315|consen 304 VCVALN 309 (311)
T ss_pred EEEEee
Confidence 887764
|
|
| >KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-35 Score=306.83 Aligned_cols=277 Identities=21% Similarity=0.433 Sum_probs=249.1
Q ss_pred CCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeE
Q 003236 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLR 634 (837)
Q Consensus 555 ~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~~~~~~~ 634 (837)
..+|..|.|.|+|+.|++|+..|.+.+|+..+......+..|...|.++.|++++.++++|+.+|.|++|+..-.. ++
T Consensus 96 kc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmnn--Vk 173 (464)
T KOG0284|consen 96 KCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTSFNFETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMNN--VK 173 (464)
T ss_pred ccceeeEEEcCCCceeEeecccccEEEecCceeeHHHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccchhh--hH
Confidence 3469999999999999999999999999997777777788999999999999999999999999999999987543 44
Q ss_pred Eeecc-ccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeeEEecC-CCeeEEEEecCCCEEEEEEcCCeEEEEECC
Q 003236 635 TFTGH-STTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ-SGATQMRFQPRLGRILAAAIENYISILDVE 712 (837)
Q Consensus 635 ~~~~h-~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~~-~~i~sl~~sp~g~~llags~dg~I~iwDl~ 712 (837)
.+..| ...|.+++|+|++. .|++|++||+|+|||....+....+..+ -.|.++.|+|..+.|++++.|+.|++||.+
T Consensus 174 ~~~ahh~eaIRdlafSpnDs-kF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~kgLiasgskDnlVKlWDpr 252 (464)
T KOG0284|consen 174 IIQAHHAEAIRDLAFSPNDS-KFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPR 252 (464)
T ss_pred HhhHhhhhhhheeccCCCCc-eeEEecCCCeEEEEeccCCchhheeccCCCCcceeccCCccceeEEccCCceeEeecCC
Confidence 45544 49999999999754 6779999999999999998888877754 469999999999999999999999999999
Q ss_pred CCeEEEEEcCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCC-CEEEEEEcCC
Q 003236 713 TQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTF-PSLLVIGCYE 790 (837)
Q Consensus 713 s~~~~~~l~~h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fspdg-~~L~sgs~dg 790 (837)
++.|+.++.+|+..|..+.|++++++|++++ |..+++||+++. +.+..+.+|...++++.|+|-. ..|.+|+.||
T Consensus 253 Sg~cl~tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~m---kEl~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dg 329 (464)
T KOG0284|consen 253 SGSCLATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTM---KELFTYRGHKKDVTSLTWHPLNESLFTSGGSDG 329 (464)
T ss_pred CcchhhhhhhccceEEEEEEcCCCCeeEEccCCceEEEEehhHh---HHHHHhhcchhhheeeccccccccceeeccCCC
Confidence 9999999999999999999999999999999 999999999966 6788889999999999999965 4567788899
Q ss_pred eEEEEECCCCcEE--EeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 003236 791 TLELWNMTENKTL--TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 837 (837)
Q Consensus 791 ~I~IwDl~s~~~~--~l~~h~~~V~sla~spdg~~LaSgs~DG~I~IWd 837 (837)
.|..|.+...+.+ .-.+|...|++++|+|-|.+|++|+.|.++++|.
T Consensus 330 svvh~~v~~~~p~~~i~~AHd~~iwsl~~hPlGhil~tgsnd~t~rfw~ 378 (464)
T KOG0284|consen 330 SVVHWVVGLEEPLGEIPPAHDGEIWSLAYHPLGHILATGSNDRTVRFWT 378 (464)
T ss_pred ceEEEeccccccccCCCcccccceeeeeccccceeEeecCCCcceeeec
Confidence 9999999865555 4458999999999999999999999999999994
|
|
| >KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-33 Score=297.39 Aligned_cols=316 Identities=19% Similarity=0.296 Sum_probs=269.4
Q ss_pred CeEEcccCCCceEEeecCCCC-CCCC--ccccccccCCCeeeeEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEe
Q 003236 507 RFVDDGSLDDNVESFLSPDDA-DPRD--RVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWC 583 (837)
Q Consensus 507 ~~v~~Gs~D~~v~~w~s~~~~-~~~~--~~~~~~~~~~g~~~~~~~~l~~H~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd 583 (837)
.++++|+.|...++|...... .... .+.++... .+ .. -..+..|++++|+.+|.+||+|+.||.++||+
T Consensus 192 ~llasg~~~s~ari~~l~e~~~~~~~q~~lrh~~~~-~~------~s-~~~nkdVT~L~Wn~~G~~LatG~~~G~~riw~ 263 (524)
T KOG0273|consen 192 GLLASGSGDSTARIWNLLENSNIGSTQLVLRHCIRE-GG------KS-VPSNKDVTSLDWNNDGTLLATGSEDGEARIWN 263 (524)
T ss_pred hhhhccCCccceeeeeehhhccccchhhhhhhhhhh-hc------cc-CCccCCcceEEecCCCCeEEEeecCcEEEEEe
Confidence 477889999889998554311 0000 01111100 00 00 11245699999999999999999999999999
Q ss_pred CCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeEEeeccccceEEEEEcCCCCeEEEEEeCCC
Q 003236 584 TESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNS 663 (837)
Q Consensus 584 ~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg 663 (837)
.++..+.++..|+++|.++.|+.+|.||++++.|+++.+||..++.. ...+.-|..+-..+.|-.+. -|++++.|+
T Consensus 264 -~~G~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~-~q~f~~~s~~~lDVdW~~~~--~F~ts~td~ 339 (524)
T KOG0273|consen 264 -KDGNLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTV-KQQFEFHSAPALDVDWQSND--EFATSSTDG 339 (524)
T ss_pred -cCchhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceE-EEeeeeccCCccceEEecCc--eEeecCCCc
Confidence 45788889999999999999999999999999999999999988664 66777788877888887654 477899999
Q ss_pred cEEEEECCCCeeeeEEec-CCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEcCCC------
Q 003236 664 EIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSG------ 736 (837)
Q Consensus 664 ~I~vwDl~t~~~i~~~~~-~~~i~sl~~sp~g~~llags~dg~I~iwDl~s~~~~~~l~~h~~~V~sl~~spdg------ 736 (837)
.|+|+.+....++.++.+ ++.|.++.|.|.+..|++++.|++++||......+...+..|...|..+.|+|+|
T Consensus 340 ~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~~~~~l~~Hskei~t~~wsp~g~v~~n~ 419 (524)
T KOG0273|consen 340 CIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQSNSVHDLQAHSKEIYTIKWSPTGPVTSNP 419 (524)
T ss_pred eEEEEEecCCCcceeeecccCceEEEEECCCCceEEEecCCCeeEeeecCCCcchhhhhhhccceeeEeecCCCCccCCC
Confidence 999999998888887764 6789999999999999999999999999999999999999999999999999965
Q ss_pred ---CEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEEEeccCCCCe
Q 003236 737 ---EYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSAHDKLV 812 (837)
Q Consensus 737 ---~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fspdg~~L~sgs~dg~I~IwDl~s~~~~~l~~h~~~V 812 (837)
..|++++ |++|++||+..+ .+++.+..|..+|++++|+|+|+++++|+.||.|.+|++++++++......+.|
T Consensus 420 ~~~~~l~sas~dstV~lwdv~~g---v~i~~f~kH~~pVysvafS~~g~ylAsGs~dg~V~iws~~~~~l~~s~~~~~~I 496 (524)
T KOG0273|consen 420 NMNLMLASASFDSTVKLWDVESG---VPIHTLMKHQEPVYSVAFSPNGRYLASGSLDGCVHIWSTKTGKLVKSYQGTGGI 496 (524)
T ss_pred cCCceEEEeecCCeEEEEEccCC---ceeEeeccCCCceEEEEecCCCcEEEecCCCCeeEeccccchheeEeecCCCeE
Confidence 3667777 999999999988 899999999999999999999999999999999999999999999888888889
Q ss_pred eEEEEeCCCCEEEEEECCCcEEEeC
Q 003236 813 SSLAASTVNGMVASASHDKCVKIWK 837 (837)
Q Consensus 813 ~sla~spdg~~LaSgs~DG~I~IWd 837 (837)
..++|+.+|.+|..+-.||.+++-|
T Consensus 497 fel~Wn~~G~kl~~~~sd~~vcvld 521 (524)
T KOG0273|consen 497 FELCWNAAGDKLGACASDGSVCVLD 521 (524)
T ss_pred EEEEEcCCCCEEEEEecCCCceEEE
Confidence 9999999999999999999998754
|
|
| >KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-32 Score=276.71 Aligned_cols=275 Identities=16% Similarity=0.285 Sum_probs=235.0
Q ss_pred CCCeEEcccCCCceEEeecCCCCCCCCccccccccCCCeeeeEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEeC
Q 003236 505 MDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCT 584 (837)
Q Consensus 505 ~~~~v~~Gs~D~~v~~w~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~H~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~ 584 (837)
....+.+++.|..+-+|....+ +..-| ..++.++||...|..+..++||.+.++++.|+++++||+
T Consensus 27 ~~~~l~sasrDk~ii~W~L~~d-----------d~~~G---~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~~lrlWDl 92 (315)
T KOG0279|consen 27 NSDILVSASRDKTIIVWKLTSD-----------DIKYG---VPVRRLTGHSHFVSDVVLSSDGNFALSASWDGTLRLWDL 92 (315)
T ss_pred CCceEEEcccceEEEEEEeccC-----------ccccC---ceeeeeeccceEecceEEccCCceEEeccccceEEEEEe
Confidence 3467888999999999965544 11122 346788999999999999999999999999999999999
Q ss_pred CCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeEEee-ccccceEEEEEcCCC-CeEEEEEeCC
Q 003236 585 ESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFT-GHSTTVMSLDFHPSK-EDLLCSCDNN 662 (837)
Q Consensus 585 ~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~~~~~~~~~~-~h~~~V~sl~fspdg-~~llasgs~D 662 (837)
.+++....|.+|...|.+++|++|.+.|++|+.|.+|++|++...- ...... .+.+.|.|+.|+|+. +.++++++.|
T Consensus 93 ~~g~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~c-k~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~D 171 (315)
T KOG0279|consen 93 ATGESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGVC-KYTIHEDSHREWVSCVRFSPNESNPIIVSASWD 171 (315)
T ss_pred cCCcEEEEEEecCCceEEEEecCCCceeecCCCcceeeeeeecccE-EEEEecCCCcCcEEEEEEcCCCCCcEEEEccCC
Confidence 9999999999999999999999999999999999999999998643 233322 237899999999985 5688899999
Q ss_pred CcEEEEECCCCeeeeEEec-CCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEcCCCCEEEE
Q 003236 663 SEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLAS 741 (837)
Q Consensus 663 g~I~vwDl~t~~~i~~~~~-~~~i~sl~~sp~g~~llags~dg~I~iwDl~s~~~~~~l~~h~~~V~sl~~spdg~~Las 741 (837)
++|++||+++.+....+.. .+.++.++++|||...++|+.||.+.+||++.++.+..+. |...|.+++|+|+...|+.
T Consensus 172 ktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~lysl~-a~~~v~sl~fspnrywL~~ 250 (315)
T KOG0279|consen 172 KTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNLYSLE-AFDIVNSLCFSPNRYWLCA 250 (315)
T ss_pred ceEEEEccCCcchhhccccccccEEEEEECCCCCEEecCCCCceEEEEEccCCceeEecc-CCCeEeeEEecCCceeEee
Confidence 9999999999888877765 4558999999999999999999999999999999988776 8899999999999999988
Q ss_pred EeCCeEEEEEcCCCCCceeEEEeec---------CCCceEEEEEeCCCCEEEEEEcCCeEEEEECC
Q 003236 742 VSDELVRVWSIGSGSKGECIHELSC---------TGNKFHSCVFHPTFPSLLVIGCYETLELWNMT 798 (837)
Q Consensus 742 gsDg~I~IwDl~s~~~~~~i~~~~~---------~~~~I~sv~fspdg~~L~sgs~dg~I~IwDl~ 798 (837)
+.+..|+|||+.+.. ++.++.. ......+++|+++|..|++|-.|+.|++|.+.
T Consensus 251 at~~sIkIwdl~~~~---~v~~l~~d~~g~s~~~~~~~clslaws~dG~tLf~g~td~~irv~qv~ 313 (315)
T KOG0279|consen 251 ATATSIKIWDLESKA---VVEELKLDGIGPSSKAGDPICLSLAWSADGQTLFAGYTDNVIRVWQVA 313 (315)
T ss_pred ccCCceEEEeccchh---hhhhccccccccccccCCcEEEEEEEcCCCcEEEeeecCCcEEEEEee
Confidence 888889999999873 3333221 13345788999999999999999999999864
|
|
| >KOG0645 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-32 Score=270.58 Aligned_cols=283 Identities=24% Similarity=0.436 Sum_probs=241.7
Q ss_pred eeEEEEecCCCCCeEEEEEcCC-CCEEEEEECCCcEEEEeCCC---CeEEEEe-ccCCCCeEEEEEcCCCCEEEEEeCCC
Q 003236 545 FTEFQLIPASTSKVESCHFSPD-GKLLATGGHDKKAVLWCTES---FTVKSTL-EEHTQWITDVRFSPSLSRLATSSADR 619 (837)
Q Consensus 545 ~~~~~~l~~H~~~V~sl~fSpd-g~~Lasgs~Dg~I~VWd~~t---~~~~~~l-~~h~~~I~~l~fspdg~~Latgs~Dg 619 (837)
+..++.+.+|.++|..++|+|- |..||+++.|+.|+||+... ..+...+ .+|+..|.+++|+|.|++|+++|.|.
T Consensus 4 l~~~~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~ 83 (312)
T KOG0645|consen 4 LILEQKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDA 83 (312)
T ss_pred ceeEEeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccc
Confidence 3467889999999999999997 88999999999999999884 4555555 47999999999999999999999999
Q ss_pred eEEEEEcCCCC-ceeEEeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCC---eeeeEEec-CCCeeEEEEecCC
Q 003236 620 TVRVWDTENPD-YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNG---SCAGVFKC-QSGATQMRFQPRL 694 (837)
Q Consensus 620 ~I~IWDl~~~~-~~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~---~~i~~~~~-~~~i~sl~~sp~g 694 (837)
++.||.-..++ .++.++.+|.+.|.|++|+++|. +|++|+.|+.|.||.+..+ +++..+.. ...|..+.|+|..
T Consensus 84 t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~-~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHPt~ 162 (312)
T KOG0645|consen 84 TVVIWKKEDGEFECVATLEGHENEVKCVAWSASGN-YLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPTE 162 (312)
T ss_pred eEEEeecCCCceeEEeeeeccccceeEEEEcCCCC-EEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcCCc
Confidence 99999877554 36788999999999999999976 7889999999999999754 45555553 4568999999999
Q ss_pred CEEEEEEcCCeEEEEECC---CCeEEEEEcCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCc
Q 003236 695 GRILAAAIENYISILDVE---TQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNK 770 (837)
Q Consensus 695 ~~llags~dg~I~iwDl~---s~~~~~~l~~h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~ 770 (837)
..|++++.|++|++|+-. ...++.++.+|...|.+++|++.|..|++++ |++|+||...+. .-..|...
T Consensus 163 dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~~-------~~~~~sr~ 235 (312)
T KOG0645|consen 163 DLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLYTD-------LSGMHSRA 235 (312)
T ss_pred ceeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEecCCcceEeeeeccC-------cchhcccc
Confidence 999999999999999876 3488999999999999999999999999999 999999986543 12235678
Q ss_pred eEEEEEeCCCCEEEEEEcCCeEEEEECCCCc------EE--EeccCCCCeeEEEEeCC-CCEEEEEECCCcEEEeC
Q 003236 771 FHSCVFHPTFPSLLVIGCYETLELWNMTENK------TL--TLSAHDKLVSSLAASTV-NGMVASASHDKCVKIWK 837 (837)
Q Consensus 771 I~sv~fspdg~~L~sgs~dg~I~IwDl~s~~------~~--~l~~h~~~V~sla~spd-g~~LaSgs~DG~I~IWd 837 (837)
++.+.|. ...|++++.|+.|++|...... .+ ....|+..|+++.|.|. ..+|++|++||.|++|.
T Consensus 236 ~Y~v~W~--~~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVNsV~w~p~~~~~L~s~~DDG~v~~W~ 309 (312)
T KOG0645|consen 236 LYDVPWD--NGVIASGGGDDAIRLFKESDSPDEPSWNLLAKKEGAHEVDVNSVQWNPKVSNRLASGGDDGIVNFWE 309 (312)
T ss_pred eEeeeec--ccceEeccCCCEEEEEEecCCCCCchHHHHHhhhcccccccceEEEcCCCCCceeecCCCceEEEEE
Confidence 8999998 4469999999999999765431 11 34579999999999995 67999999999999994
|
|
| >KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-33 Score=294.47 Aligned_cols=282 Identities=25% Similarity=0.441 Sum_probs=249.3
Q ss_pred EEEecCCCCCeEEEEEcCCCC-EEEEEECCCcEEEEeCCC--CeEE--EEec----------cCCCCeEEEEEcCCCCEE
Q 003236 548 FQLIPASTSKVESCHFSPDGK-LLATGGHDKKAVLWCTES--FTVK--STLE----------EHTQWITDVRFSPSLSRL 612 (837)
Q Consensus 548 ~~~l~~H~~~V~sl~fSpdg~-~Lasgs~Dg~I~VWd~~t--~~~~--~~l~----------~h~~~I~~l~fspdg~~L 612 (837)
++.++ |..+|.+++|+|-.. +|++|+.|-+.++|++.. .... ..++ ..+..|++++|+.+|..|
T Consensus 172 ~kvl~-~~~~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn~~G~~L 250 (524)
T KOG0273|consen 172 AKVLR-HESEVFICAWNPLRDGLLASGSGDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDWNNDGTLL 250 (524)
T ss_pred eeecc-CCCceEEEecCchhhhhhhccCCccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEecCCCCeE
Confidence 45555 999999999999655 999999999999999874 1111 1111 123579999999999999
Q ss_pred EEEeCCCeEEEEEcCCCCceeEEeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeeEEecCCCe-eEEEEe
Q 003236 613 ATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGA-TQMRFQ 691 (837)
Q Consensus 613 atgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~~~~i-~sl~~s 691 (837)
|+|+.||.++||+.... .+.++..|.++|.++.|+.+|.++ ++++.|+++.+||..++.....+..+... ..+.|-
T Consensus 251 atG~~~G~~riw~~~G~--l~~tl~~HkgPI~slKWnk~G~yi-lS~~vD~ttilwd~~~g~~~q~f~~~s~~~lDVdW~ 327 (524)
T KOG0273|consen 251 ATGSEDGEARIWNKDGN--LISTLGQHKGPIFSLKWNKKGTYI-LSGGVDGTTILWDAHTGTVKQQFEFHSAPALDVDWQ 327 (524)
T ss_pred EEeecCcEEEEEecCch--hhhhhhccCCceEEEEEcCCCCEE-EeccCCccEEEEeccCceEEEeeeeccCCccceEEe
Confidence 99999999999999853 378899999999999999998755 49999999999999999999988876665 678887
Q ss_pred cCCCEEEEEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCc
Q 003236 692 PRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNK 770 (837)
Q Consensus 692 p~g~~llags~dg~I~iwDl~s~~~~~~l~~h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~ 770 (837)
.+ ..+++++.|+.|+|+.+....++.++.+|.+.|.++.|+|.+.+|++++ |++++||..... .+++.+..|...
T Consensus 328 ~~-~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~---~~~~~l~~Hske 403 (524)
T KOG0273|consen 328 SN-DEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQS---NSVHDLQAHSKE 403 (524)
T ss_pred cC-ceEeecCCCceEEEEEecCCCcceeeecccCceEEEEECCCCceEEEecCCCeeEeeecCCC---cchhhhhhhccc
Confidence 65 6788999999999999999999999999999999999999999999999 999999998776 788899999999
Q ss_pred eEEEEEeCCCC---------EEEEEEcCCeEEEEECCCCcEE-EeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 003236 771 FHSCVFHPTFP---------SLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 837 (837)
Q Consensus 771 I~sv~fspdg~---------~L~sgs~dg~I~IwDl~s~~~~-~l~~h~~~V~sla~spdg~~LaSgs~DG~I~IWd 837 (837)
|..+.|+|+|. .|++++.|++|++||+..+.++ .+..|..+|.+++|+|+|+++|+|+.||.|.||+
T Consensus 404 i~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~pVysvafS~~g~ylAsGs~dg~V~iws 480 (524)
T KOG0273|consen 404 IYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQEPVYSVAFSPNGRYLASGSLDGCVHIWS 480 (524)
T ss_pred eeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccCCCceEEEEecCCCcEEEecCCCCeeEecc
Confidence 99999999863 5899999999999999999988 7779999999999999999999999999999995
|
|
| >KOG0293 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-33 Score=294.94 Aligned_cols=291 Identities=20% Similarity=0.320 Sum_probs=245.1
Q ss_pred CCeeeeEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCC---CeEEEEeccCCCCeEEEEEcCCCCEEEEEeC
Q 003236 541 KGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES---FTVKSTLEEHTQWITDVRFSPSLSRLATSSA 617 (837)
Q Consensus 541 ~g~~~~~~~~l~~H~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t---~~~~~~l~~h~~~I~~l~fspdg~~Latgs~ 617 (837)
...+..+...+..|++.|+-+.||++|+|||+++.|.+..||.+.. .+..+++.+|..+|..+.|+||.++|++|+.
T Consensus 210 ~qip~qt~qil~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~ 289 (519)
T KOG0293|consen 210 LQIPSQTWQILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGF 289 (519)
T ss_pred ccCCchhhhhHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecCc
Confidence 3456677889999999999999999999999999999999997653 4557889999999999999999999999999
Q ss_pred CCeEEEEEcCCCCceeEEeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeeEEec--CCCeeEEEEecCCC
Q 003236 618 DRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC--QSGATQMRFQPRLG 695 (837)
Q Consensus 618 Dg~I~IWDl~~~~~~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~--~~~i~sl~~sp~g~ 695 (837)
|..+.+||+.++......-.+|...+.+++|.||+.. +++|+.|+.|..||+... ....... ...|.++++++||+
T Consensus 290 ~e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~-~V~Gs~dr~i~~wdlDgn-~~~~W~gvr~~~v~dlait~Dgk 367 (519)
T KOG0293|consen 290 DEVLSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFR-FVTGSPDRTIIMWDLDGN-ILGNWEGVRDPKVHDLAITYDGK 367 (519)
T ss_pred hHheeeccCCcchhhhhcccCcCCCcceeEEccCCce-eEecCCCCcEEEecCCcc-hhhcccccccceeEEEEEcCCCc
Confidence 9999999999988644444456789999999999886 458999999999999843 3333332 24689999999999
Q ss_pred EEEEEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCc--eE
Q 003236 696 RILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNK--FH 772 (837)
Q Consensus 696 ~llags~dg~I~iwDl~s~~~~~~l~~h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~--I~ 772 (837)
++++.+.|..|++|+.++...+..+. ...+|++++++.|++++++.- +..|.+||+... ..+..+.+|... +.
T Consensus 368 ~vl~v~~d~~i~l~~~e~~~dr~lis-e~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~---~lv~kY~Ghkq~~fiI 443 (519)
T KOG0293|consen 368 YVLLVTVDKKIRLYNREARVDRGLIS-EEQPITSFSISKDGKLALVNLQDQEIHLWDLEEN---KLVRKYFGHKQGHFII 443 (519)
T ss_pred EEEEEecccceeeechhhhhhhcccc-ccCceeEEEEcCCCcEEEEEcccCeeEEeecchh---hHHHHhhcccccceEE
Confidence 99999999999999998876665444 457899999999999988776 889999999855 556666666432 33
Q ss_pred EEEEe-CCCCEEEEEEcCCeEEEEECCCCcEE-EeccCCCCeeEEEEeCCC-CEEEEEECCCcEEEeC
Q 003236 773 SCVFH-PTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVN-GMVASASHDKCVKIWK 837 (837)
Q Consensus 773 sv~fs-pdg~~L~sgs~dg~I~IwDl~s~~~~-~l~~h~~~V~sla~spdg-~~LaSgs~DG~I~IWd 837 (837)
.-+|- .+..+|++|+.|+.|+||+..+++++ .+.+|...|++++|+|.. .++|+|++||+|+||.
T Consensus 444 rSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~LsGHs~~vNcVswNP~~p~m~ASasDDgtIRIWg 511 (519)
T KOG0293|consen 444 RSCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVLSGHSKTVNCVSWNPADPEMFASASDDGTIRIWG 511 (519)
T ss_pred EeccCCCCcceEEecCCCceEEEEEccCCceeEeecCCcceeeEEecCCCCHHHhhccCCCCeEEEec
Confidence 33444 45588999999999999999999988 889999999999999965 5899999999999994
|
|
| >KOG0282 consensus mRNA splicing factor [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-34 Score=302.84 Aligned_cols=290 Identities=20% Similarity=0.337 Sum_probs=253.7
Q ss_pred eEEEEecCCCCCeEEEEEcC-CCCEEEEEECCCcEEEEeCCC-CeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEE
Q 003236 546 TEFQLIPASTSKVESCHFSP-DGKLLATGGHDKKAVLWCTES-FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRV 623 (837)
Q Consensus 546 ~~~~~l~~H~~~V~sl~fSp-dg~~Lasgs~Dg~I~VWd~~t-~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~I 623 (837)
..+.++.+|+..|+++.|.| .+.+|++++.|+.|+||++.. +++++++.+|..+|.+++|+.+|..+++++.|++|++
T Consensus 205 k~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKl 284 (503)
T KOG0282|consen 205 KLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLKL 284 (503)
T ss_pred hheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCCeeeeeecceeeee
Confidence 35678899999999999999 899999999999999999876 8999999999999999999999999999999999999
Q ss_pred EEcCCCCceeEEeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeeEEec-CCCeeEEEEecCCCEEEEEEc
Q 003236 624 WDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAI 702 (837)
Q Consensus 624 WDl~~~~~~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~-~~~i~sl~~sp~g~~llags~ 702 (837)
||++++.+ +..+. ....++|+.|+|++.++|++|+.|+.|+.||+++++.+..+.. -+.|..+.|.+++.++++++.
T Consensus 285 wDtETG~~-~~~f~-~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~rFissSD 362 (503)
T KOG0282|consen 285 WDTETGQV-LSRFH-LDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDEGRRFISSSD 362 (503)
T ss_pred eccccceE-EEEEe-cCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEccCCceEeeecc
Confidence 99999875 33333 3467899999999988999999999999999999998888865 467999999999999999999
Q ss_pred CCeEEEEECCCCeEEEEEcC-CCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCC--CceEEEEEeC
Q 003236 703 ENYISILDVETQVCRLKLQG-HKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTG--NKFHSCVFHP 778 (837)
Q Consensus 703 dg~I~iwDl~s~~~~~~l~~-h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~--~~I~sv~fsp 778 (837)
|+.++||+.+....+..+.. +.....||..+|++.++++-+ |+.|.||.+...........+.+|. +.-..|.|||
T Consensus 363 dks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSp 442 (503)
T KOG0282|consen 363 DKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSP 442 (503)
T ss_pred CccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceeccCceeeEEEcC
Confidence 99999999998866554432 334567899999999999988 9999999987654434444555553 4567789999
Q ss_pred CCCEEEEEEcCCeEEEEECCCCcEE-EeccCCCCeeEEEEeCCC-CEEEEEECCCcEEEeC
Q 003236 779 TFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVN-GMVASASHDKCVKIWK 837 (837)
Q Consensus 779 dg~~L~sgs~dg~I~IwDl~s~~~~-~l~~h~~~V~sla~spdg-~~LaSgs~DG~I~IWd 837 (837)
||.+|++|+.||.+.+||.++.+++ .+.+|+.++..+.|+|.. ..+|||+.||.|+|||
T Consensus 443 DG~~l~SGdsdG~v~~wdwkt~kl~~~lkah~~~ci~v~wHP~e~Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 443 DGRTLCSGDSDGKVNFWDWKTTKLVSKLKAHDQPCIGVDWHPVEPSKVATCGWDGLIKIWD 503 (503)
T ss_pred CCCeEEeecCCccEEEeechhhhhhhccccCCcceEEEEecCCCcceeEecccCceeEecC
Confidence 9999999999999999999999988 788999999999999965 5899999999999997
|
|
| >KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-31 Score=294.63 Aligned_cols=320 Identities=20% Similarity=0.321 Sum_probs=259.2
Q ss_pred ccCCCeEEcccCCCceEEeecCCCCCCCCccccccccCCCeeeeEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEE
Q 003236 503 TDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLW 582 (837)
Q Consensus 503 ~~~~~~v~~Gs~D~~v~~w~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~H~~~V~sl~fSpdg~~Lasgs~Dg~I~VW 582 (837)
.+...+++.|+. ..+.+|..+..... .-.+|...+++.+|...|+++.|+.|.++|++|+.|-+++||
T Consensus 105 SPng~~fav~~g-n~lqiw~~P~~~~~-----------~~~pFvl~r~~~g~fddi~si~Ws~DSr~l~~gsrD~s~rl~ 172 (893)
T KOG0291|consen 105 SPNGKFFAVGCG-NLLQIWHAPGEIKN-----------EFNPFVLHRTYLGHFDDITSIDWSDDSRLLVTGSRDLSARLF 172 (893)
T ss_pred CCCCcEEEEEec-ceeEEEecCcchhc-----------ccCcceEeeeecCCccceeEEEeccCCceEEeccccceEEEE
Confidence 333467776654 57888866554221 235677788999999999999999999999999999999999
Q ss_pred eCCCCeE--EEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCC-----------------------CCc-----e
Q 003236 583 CTESFTV--KSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTEN-----------------------PDY-----S 632 (837)
Q Consensus 583 d~~t~~~--~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~-----------------------~~~-----~ 632 (837)
+++..+. ...+.+|.+.|..+-|..+...++|.+.||.+.+|.... ++. .
T Consensus 173 ~v~~~k~~~~~~l~gHkd~VvacfF~~~~~~l~tvskdG~l~~W~~~~~P~~~~~~~kd~eg~~d~~~~~~~Eek~~~~~ 252 (893)
T KOG0291|consen 173 GVDGNKNLFTYALNGHKDYVVACFFGANSLDLYTVSKDGALFVWTCDLRPPELDKAEKDEEGSDDEEMDEDGEEKTHKIF 252 (893)
T ss_pred EeccccccceEeccCCCcceEEEEeccCcceEEEEecCceEEEEEecCCCcccccccccccccccccccccchhhhcceE
Confidence 9987665 577889999999999999999999999999999998761 000 0
Q ss_pred e-----EEeeccccc------------------------------------------eEEEEEcCCCCeEEEEEeCCCcE
Q 003236 633 L-----RTFTGHSTT------------------------------------------VMSLDFHPSKEDLLCSCDNNSEI 665 (837)
Q Consensus 633 ~-----~~~~~h~~~------------------------------------------V~sl~fspdg~~llasgs~Dg~I 665 (837)
. ..+...... |..++|+..|+.+.+.|+.-|.+
T Consensus 253 ~~k~~k~~ln~~~~kvtaa~fH~~t~~lvvgFssG~f~LyelP~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQL 332 (893)
T KOG0291|consen 253 WYKTKKHYLNQNSSKVTAAAFHKGTNLLVVGFSSGEFGLYELPDFNLIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQL 332 (893)
T ss_pred EEEEEeeeecccccceeeeeccCCceEEEEEecCCeeEEEecCCceEEEEeecccceeeEEEecccCCEEEEcCCccceE
Confidence 0 001111123 34444454555555555555677
Q ss_pred EEEECCCCeeeeEEe-cCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEe-
Q 003236 666 RYWSINNGSCAGVFK-CQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS- 743 (837)
Q Consensus 666 ~vwDl~t~~~i~~~~-~~~~i~sl~~sp~g~~llags~dg~I~iwDl~s~~~~~~l~~h~~~V~sl~~spdg~~Lasgs- 743 (837)
.||+..+...+.... +...+++++++|||.++++|+.||.|+|||..++-|..+|..|++.|+.+.|+..++.+++.+
T Consensus 333 lVweWqsEsYVlKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~~g~~llssSL 412 (893)
T KOG0291|consen 333 LVWEWQSESYVLKQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTARGNVLLSSSL 412 (893)
T ss_pred EEEEeeccceeeeccccccceeeEEECCCCcEEEeccCCCcEEEEeccCceEEEEeccCCCceEEEEEEecCCEEEEeec
Confidence 777776655554444 345799999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeEEEEEcCCCCCceeEEEeecC-CCceEEEEEeCCCCEEEEEEcCC-eEEEEECCCCcEE-EeccCCCCeeEEEEeCC
Q 003236 744 DELVRVWSIGSGSKGECIHELSCT-GNKFHSCVFHPTFPSLLVIGCYE-TLELWNMTENKTL-TLSAHDKLVSSLAASTV 820 (837)
Q Consensus 744 Dg~I~IwDl~s~~~~~~i~~~~~~-~~~I~sv~fspdg~~L~sgs~dg-~I~IwDl~s~~~~-~l~~h~~~V~sla~spd 820 (837)
||+|+.||+... .+.+++... .....+++..|.|..+++|+.|. .|++|++.+|+++ .+.+|+++|.+++|+|+
T Consensus 413 DGtVRAwDlkRY---rNfRTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~ 489 (893)
T KOG0291|consen 413 DGTVRAWDLKRY---RNFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPD 489 (893)
T ss_pred CCeEEeeeeccc---ceeeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeEEccc
Confidence 999999999876 667776654 34578899999999988888888 8999999999999 78899999999999999
Q ss_pred CCEEEEEECCCcEEEeC
Q 003236 821 NGMVASASHDKCVKIWK 837 (837)
Q Consensus 821 g~~LaSgs~DG~I~IWd 837 (837)
+..||+++.|.+|++||
T Consensus 490 ~~~LaS~SWDkTVRiW~ 506 (893)
T KOG0291|consen 490 GSLLASGSWDKTVRIWD 506 (893)
T ss_pred cCeEEeccccceEEEEE
Confidence 99999999999999997
|
|
| >KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-31 Score=296.32 Aligned_cols=289 Identities=22% Similarity=0.347 Sum_probs=253.8
Q ss_pred eeeEEEEecCCCCCeEEEEEcCCCCEEEEEECC-CcEEEEeCCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEE
Q 003236 544 TFTEFQLIPASTSKVESCHFSPDGKLLATGGHD-KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVR 622 (837)
Q Consensus 544 ~~~~~~~l~~H~~~V~sl~fSpdg~~Lasgs~D-g~I~VWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~ 622 (837)
.+..+..+.-...+|..++|+..|.+||.|+.. |.+.||+..+...+....+|...|++++++|||.++|||+.||.|+
T Consensus 296 ~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVlKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVK 375 (893)
T KOG0291|consen 296 DFNLIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVLKQQGHSDRITSLAYSPDGQLIATGAEDGKVK 375 (893)
T ss_pred CceEEEEeecccceeeEEEecccCCEEEEcCCccceEEEEEeeccceeeeccccccceeeEEECCCCcEEEeccCCCcEE
Confidence 345677777788899999999999999998765 7999999999888999999999999999999999999999999999
Q ss_pred EEEcCCCCceeEEeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeeEEecCCC--eeEEEEecCCCEEEEE
Q 003236 623 VWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSG--ATQMRFQPRLGRILAA 700 (837)
Q Consensus 623 IWDl~~~~~~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~~~~--i~sl~~sp~g~~llag 700 (837)
|||...+- |+.++..|+..|+.+.|+..+. .+++.+-||+|+.||+...++.+++..+.+ ..|++..|.|..+++|
T Consensus 376 vWn~~Sgf-C~vTFteHts~Vt~v~f~~~g~-~llssSLDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~sGelV~AG 453 (893)
T KOG0291|consen 376 VWNTQSGF-CFVTFTEHTSGVTAVQFTARGN-VLLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPSGELVCAG 453 (893)
T ss_pred EEeccCce-EEEEeccCCCceEEEEEEecCC-EEEEeecCCeEEeeeecccceeeeecCCCceeeeEEEEcCCCCEEEee
Confidence 99999754 6999999999999999999976 555888999999999999999999998766 5688888889988888
Q ss_pred EcCC-eEEEEECCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeC
Q 003236 701 AIEN-YISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHP 778 (837)
Q Consensus 701 s~dg-~I~iwDl~s~~~~~~l~~h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fsp 778 (837)
+.|. .|.+|++.+|+.+..+.+|+++|.+++|+|++..|++++ |.+|++||+-... ..+.++ .....+..++|+|
T Consensus 454 ~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~s~--~~vEtl-~i~sdvl~vsfrP 530 (893)
T KOG0291|consen 454 AQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLASGSWDKTVRIWDIFSSS--GTVETL-EIRSDVLAVSFRP 530 (893)
T ss_pred ccceEEEEEEEeecCeeeehhcCCCCcceeeEEccccCeEEeccccceEEEEEeeccC--ceeeeE-eeccceeEEEEcC
Confidence 8885 799999999999999999999999999999999999999 9999999997652 122233 3467899999999
Q ss_pred CCCEEEEEEcCCeEEEEECCCCcEE-----------------Ee----ccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 003236 779 TFPSLLVIGCYETLELWNMTENKTL-----------------TL----SAHDKLVSSLAASTVNGMVASASHDKCVKIWK 837 (837)
Q Consensus 779 dg~~L~sgs~dg~I~IwDl~s~~~~-----------------~l----~~h~~~V~sla~spdg~~LaSgs~DG~I~IWd 837 (837)
+|+.|++++-||.|.+||...+..+ .+ .......+.+++++||++|++|+....|+||+
T Consensus 531 dG~elaVaTldgqItf~d~~~~~q~~~IdgrkD~~~gR~~~D~~ta~~sa~~K~Ftti~ySaDG~~IlAgG~sn~iCiY~ 610 (893)
T KOG0291|consen 531 DGKELAVATLDGQITFFDIKEAVQVGSIDGRKDLSGGRKETDRITAENSAKGKTFTTICYSADGKCILAGGESNSICIYD 610 (893)
T ss_pred CCCeEEEEEecceEEEEEhhhceeeccccchhhccccccccceeehhhcccCCceEEEEEcCCCCEEEecCCcccEEEEE
Confidence 9999999999999999998765433 01 12235789999999999999999999999985
|
|
| >KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-31 Score=278.00 Aligned_cols=310 Identities=16% Similarity=0.203 Sum_probs=270.5
Q ss_pred cccCCCeEEcccCCCceEEeecCCCCCCCCccccccccCCCeeeeEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEE
Q 003236 502 LTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVL 581 (837)
Q Consensus 502 l~~~~~~v~~Gs~D~~v~~w~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~H~~~V~sl~fSpdg~~Lasgs~Dg~I~V 581 (837)
+.+..+++++|+-|+...+|....+. ....+.+|.+.|+|+.||.||.+||||+.+|.|+|
T Consensus 72 l~P~~~l~aTGGgDD~AflW~~~~ge-------------------~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v 132 (399)
T KOG0296|consen 72 LHPNNNLVATGGGDDLAFLWDISTGE-------------------FAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLV 132 (399)
T ss_pred eCCCCceEEecCCCceEEEEEccCCc-------------------ceeEecCCCCceEEEEEccCceEEEecCCCccEEE
Confidence 45577899999999999999665542 35667899999999999999999999999999999
Q ss_pred EeCCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeEEeeccccceEEEEEcCCCCeEEEEEeC
Q 003236 582 WCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDN 661 (837)
Q Consensus 582 Wd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~sl~fspdg~~llasgs~ 661 (837)
|...++.....+...-+.|.-++|+|.+..|+.|+.||.|.+|.+.+.. ..+.+.+|..++++=.|.|+|++++ ++..
T Consensus 133 ~~~stg~~~~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~-~~kv~~Gh~~~ct~G~f~pdGKr~~-tgy~ 210 (399)
T KOG0296|consen 133 FKVSTGGEQWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQA-LCKVMSGHNSPCTCGEFIPDGKRIL-TGYD 210 (399)
T ss_pred EEcccCceEEEeecccCceEEEEecccccEEEeecCCCcEEEEECCCcc-eeeEecCCCCCcccccccCCCceEE-EEec
Confidence 9999999998887677789999999999999999999999999999864 4789999999999999999988555 8889
Q ss_pred CCcEEEEECCCCeeeeEEec--CCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEc--------CCCCCEEEEE
Q 003236 662 NSEIRYWSINNGSCAGVFKC--QSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQ--------GHKNQVHSVC 731 (837)
Q Consensus 662 Dg~I~vwDl~t~~~i~~~~~--~~~i~sl~~sp~g~~llags~dg~I~iwDl~s~~~~~~l~--------~h~~~V~sl~ 731 (837)
||+|++||+.++.++..+.. .....++.++..+..++.|..++.+++....+++.+.... .++..+.||.
T Consensus 211 dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve 290 (399)
T KOG0296|consen 211 DGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVE 290 (399)
T ss_pred CceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhhhh
Confidence 99999999999999888874 4467889999999999999999999999999998887776 3444445554
Q ss_pred ---EcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE-Eec
Q 003236 732 ---WNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLS 806 (837)
Q Consensus 732 ---~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fspdg~~L~sgs~dg~I~IwDl~s~~~~-~l~ 806 (837)
|+..-.+.|+|+ ||+|.|||+... .++..-.|...|+.+.|.+ ..+|++++.+|.|+.||.++|.++ .+.
T Consensus 291 ~~~~ss~lpL~A~G~vdG~i~iyD~a~~----~~R~~c~he~~V~~l~w~~-t~~l~t~c~~g~v~~wDaRtG~l~~~y~ 365 (399)
T KOG0296|consen 291 SIPSSSKLPLAACGSVDGTIAIYDLAAS----TLRHICEHEDGVTKLKWLN-TDYLLTACANGKVRQWDARTGQLKFTYT 365 (399)
T ss_pred hcccccccchhhcccccceEEEEecccc----hhheeccCCCceEEEEEcC-cchheeeccCceEEeeeccccceEEEEe
Confidence 455567788888 999999999875 3344455788899999999 789999999999999999999988 788
Q ss_pred cCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 003236 807 AHDKLVSSLAASTVNGMVASASHDKCVKIWK 837 (837)
Q Consensus 807 ~h~~~V~sla~spdg~~LaSgs~DG~I~IWd 837 (837)
+|...|.+++++|+.++++|+|.|++.+||+
T Consensus 366 GH~~~Il~f~ls~~~~~vvT~s~D~~a~VF~ 396 (399)
T KOG0296|consen 366 GHQMGILDFALSPQKRLVVTVSDDNTALVFE 396 (399)
T ss_pred cCchheeEEEEcCCCcEEEEecCCCeEEEEe
Confidence 9999999999999999999999999999985
|
|
| >PLN00181 protein SPA1-RELATED; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-31 Score=322.77 Aligned_cols=284 Identities=18% Similarity=0.283 Sum_probs=242.3
Q ss_pred ecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCC----e----EEEEeccCCCCeEEEEEcC-CCCEEEEEeCCCeE
Q 003236 551 IPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESF----T----VKSTLEEHTQWITDVRFSP-SLSRLATSSADRTV 621 (837)
Q Consensus 551 l~~H~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~----~----~~~~l~~h~~~I~~l~fsp-dg~~Latgs~Dg~I 621 (837)
+..|.+.|++++|+|+|++||+|+.|++|+||++... . ....+. +...|.+++|++ ++.+|++++.||+|
T Consensus 479 ~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~-~~~~v~~l~~~~~~~~~las~~~Dg~v 557 (793)
T PLN00181 479 LLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELA-SRSKLSGICWNSYIKSQVASSNFEGVV 557 (793)
T ss_pred ccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEec-ccCceeeEEeccCCCCEEEEEeCCCeE
Confidence 4569999999999999999999999999999997531 1 122333 346799999987 47899999999999
Q ss_pred EEEEcCCCCceeEEeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeeEEecCCCeeEEEEe-cCCCEEEEE
Q 003236 622 RVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQ-PRLGRILAA 700 (837)
Q Consensus 622 ~IWDl~~~~~~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~~~~i~sl~~s-p~g~~llag 700 (837)
+|||+.++. .+..+.+|...|++++|+|.+..+|++|+.|+.|++||++++.++..+.....+.++.|. +++..+++|
T Consensus 558 ~lWd~~~~~-~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~~~v~~v~~~~~~g~~latg 636 (793)
T PLN00181 558 QVWDVARSQ-LVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKTKANICCVQFPSESGRSLAFG 636 (793)
T ss_pred EEEECCCCe-EEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEecCCCeEEEEEeCCCCCEEEEE
Confidence 999999765 477888999999999999855568889999999999999999999888877889999995 468899999
Q ss_pred EcCCeEEEEECCCCe-EEEEEcCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCC---CceeEEEeecCCCceEEEE
Q 003236 701 AIENYISILDVETQV-CRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGS---KGECIHELSCTGNKFHSCV 775 (837)
Q Consensus 701 s~dg~I~iwDl~s~~-~~~~l~~h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~---~~~~i~~~~~~~~~I~sv~ 775 (837)
+.|+.|++||+++.. .+..+.+|...|.++.|. ++.+|++++ |+.|+|||++... ...++..+.+|...+..++
T Consensus 637 s~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v~ 715 (793)
T PLN00181 637 SADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHTNVKNFVG 715 (793)
T ss_pred eCCCeEEEEECCCCCccceEecCCCCCEEEEEEe-CCCEEEEEECCCEEEEEeCCCCccccCCcceEEEcCCCCCeeEEE
Confidence 999999999998765 567788999999999997 677888888 9999999997532 2256778889999999999
Q ss_pred EeCCCCEEEEEEcCCeEEEEECCCCcEE--------------EeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 003236 776 FHPTFPSLLVIGCYETLELWNMTENKTL--------------TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 837 (837)
Q Consensus 776 fspdg~~L~sgs~dg~I~IwDl~s~~~~--------------~l~~h~~~V~sla~spdg~~LaSgs~DG~I~IWd 837 (837)
|++++.+|++|+.|+.|++|+......+ ....|...|.+++|++++.+|++|+.||.|+||+
T Consensus 716 ~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~~~~lva~~~dG~I~i~~ 791 (793)
T PLN00181 716 LSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVCWRGQSSTLVAANSTGNIKILE 791 (793)
T ss_pred EcCCCCEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCcEEEEEEEcCCCCeEEEecCCCcEEEEe
Confidence 9999999999999999999998655322 1123556799999999999999999999999996
|
|
| >KOG0286 consensus G-protein beta subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-31 Score=266.40 Aligned_cols=277 Identities=24% Similarity=0.379 Sum_probs=244.9
Q ss_pred CceEEEEecCCCCCcccCCCccccCCCeEEcccCCCceEEeecCCCCCCCCccccccccCCCeeeeEEEEecCCCCCeEE
Q 003236 481 SKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVES 560 (837)
Q Consensus 481 ~~s~~~~~~~~~~~~~~~~~~l~~~~~~v~~Gs~D~~v~~w~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~H~~~V~s 560 (837)
....+.|+.+. +.++++|.|+.+-+|++... ..+..++--...|..
T Consensus 57 Ki~~~~ws~Ds---------------r~ivSaSqDGklIvWDs~Tt-------------------nK~haipl~s~WVMt 102 (343)
T KOG0286|consen 57 KIYAMDWSTDS---------------RRIVSASQDGKLIVWDSFTT-------------------NKVHAIPLPSSWVMT 102 (343)
T ss_pred ceeeeEecCCc---------------CeEEeeccCCeEEEEEcccc-------------------cceeEEecCceeEEE
Confidence 45666777655 78899999999999966433 235556667788999
Q ss_pred EEEcCCCCEEEEEECCCcEEEEeCCCC------eEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeE
Q 003236 561 CHFSPDGKLLATGGHDKKAVLWCTESF------TVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLR 634 (837)
Q Consensus 561 l~fSpdg~~Lasgs~Dg~I~VWd~~t~------~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~~~~~~~ 634 (837)
++|+|.|+++|+|+-|+...||++.+. +..+.+.+|++.+.|+.|.+| ..|+|+|.|.++.+||++++.. +.
T Consensus 103 CA~sPSg~~VAcGGLdN~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD-~~ilT~SGD~TCalWDie~g~~-~~ 180 (343)
T KOG0286|consen 103 CAYSPSGNFVACGGLDNKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDD-NHILTGSGDMTCALWDIETGQQ-TQ 180 (343)
T ss_pred EEECCCCCeEEecCcCceeEEEecccccccccceeeeeecCccceeEEEEEcCC-CceEecCCCceEEEEEcccceE-EE
Confidence 999999999999999999999999854 455778999999999999974 6799999999999999999774 88
Q ss_pred EeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeeEEec-CCCeeEEEEecCCCEEEEEEcCCeEEEEECCC
Q 003236 635 TFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAIENYISILDVET 713 (837)
Q Consensus 635 ~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~-~~~i~sl~~sp~g~~llags~dg~I~iwDl~s 713 (837)
.|.+|.+.|.++++.|...+.|++|+.|+..++||++.+.++..|.. ...|++++|.|+|..|++|+.|++.++||++.
T Consensus 181 ~f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRa 260 (343)
T KOG0286|consen 181 VFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFATGSDDATCRLYDLRA 260 (343)
T ss_pred EecCCcccEEEEecCCCCCCeEEecccccceeeeeccCcceeEeecccccccceEEEccCCCeeeecCCCceeEEEeecC
Confidence 99999999999999995556778999999999999999999999985 56799999999999999999999999999999
Q ss_pred CeEEEEEcC--CCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCC
Q 003236 714 QVCRLKLQG--HKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYE 790 (837)
Q Consensus 714 ~~~~~~l~~--h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fspdg~~L~sgs~dg 790 (837)
...+..+.. ...+|++++|+..|++|++|. |..+.|||.-.+ +.+..+.+|++.|+++..+|||..+++|+.|.
T Consensus 261 D~~~a~ys~~~~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~---e~vg~L~GHeNRvScl~~s~DG~av~TgSWDs 337 (343)
T KOG0286|consen 261 DQELAVYSHDSIICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKG---ERVGVLAGHENRVSCLGVSPDGMAVATGSWDS 337 (343)
T ss_pred CcEEeeeccCcccCCceeEEEcccccEEEeeecCCceeEeecccc---ceEEEeeccCCeeEEEEECCCCcEEEecchhH
Confidence 888777763 345899999999999999988 899999999877 78888999999999999999999999999999
Q ss_pred eEEEEE
Q 003236 791 TLELWN 796 (837)
Q Consensus 791 ~I~IwD 796 (837)
.|+||.
T Consensus 338 ~lriW~ 343 (343)
T KOG0286|consen 338 TLRIWA 343 (343)
T ss_pred heeecC
Confidence 999994
|
|
| >KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-32 Score=303.78 Aligned_cols=276 Identities=23% Similarity=0.381 Sum_probs=240.6
Q ss_pred EEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCC-------------------------------eEEEEecc
Q 003236 547 EFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESF-------------------------------TVKSTLEE 595 (837)
Q Consensus 547 ~~~~l~~H~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~-------------------------------~~~~~l~~ 595 (837)
++.++......|+|+.|++|+.+||.|..|..|++|.+... ....++.+
T Consensus 370 c~YT~~nt~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~G 449 (707)
T KOG0263|consen 370 CMYTFHNTYQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYG 449 (707)
T ss_pred EEEEEEEcCCcceeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeec
Confidence 44555555566999999999999999999999999986521 12244679
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeEEeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCee
Q 003236 596 HTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSC 675 (837)
Q Consensus 596 h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~ 675 (837)
|.++|..+.|+|+.++|++||+|++||+|.+.+.. ++..+.+|..+|+++.|+|.| ++|++++.|++-++|......+
T Consensus 450 H~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s-~~V~y~GH~~PVwdV~F~P~G-yYFatas~D~tArLWs~d~~~P 527 (707)
T KOG0263|consen 450 HSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWS-CLVIYKGHLAPVWDVQFAPRG-YYFATASHDQTARLWSTDHNKP 527 (707)
T ss_pred CCCceeeeeecccccceeeccCCcceeeeecccce-eEEEecCCCcceeeEEecCCc-eEEEecCCCceeeeeecccCCc
Confidence 99999999999999999999999999999999865 477888999999999999995 6888999999999999999888
Q ss_pred eeEEec-CCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcC
Q 003236 676 AGVFKC-QSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIG 753 (837)
Q Consensus 676 i~~~~~-~~~i~sl~~sp~g~~llags~dg~I~iwDl~s~~~~~~l~~h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~ 753 (837)
.+.+.+ -+.+.|+.|+|+..++++|+.|.+|++||+.++..++.|.+|.++|++++|+|+|++|++|+ |+.|+|||+.
T Consensus 528 lRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~ 607 (707)
T KOG0263|consen 528 LRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYLASGDEDGLIKIWDLA 607 (707)
T ss_pred hhhhcccccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceEeecccCCcEEEEEcC
Confidence 888875 56799999999999999999999999999999999999999999999999999999999999 9999999999
Q ss_pred CCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcE------------------------E-EeccC
Q 003236 754 SGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKT------------------------L-TLSAH 808 (837)
Q Consensus 754 s~~~~~~i~~~~~~~~~I~sv~fspdg~~L~sgs~dg~I~IwDl~s~~~------------------------~-~l~~h 808 (837)
++ ..+..+.+|.+.|.++.|+.+|..|++++.|.+|++||+..-.. + .+..-
T Consensus 608 ~~---~~v~~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llgs~~tK 684 (707)
T KOG0263|consen 608 NG---SLVKQLKGHTGTIYSLSFSRDGNVLASGGADNSVRLWDLTKVIELLNLGHISTSNSAITQENNASSLLLGSFYTK 684 (707)
T ss_pred CC---cchhhhhcccCceeEEEEecCCCEEEecCCCCeEEEEEchhhcccccccccccccccccccCCCCcceeeeeeec
Confidence 98 67888889999999999999999999999999999999853211 1 33344
Q ss_pred CCCeeEEEEeCCCCEEEEE
Q 003236 809 DKLVSSLAASTVNGMVASA 827 (837)
Q Consensus 809 ~~~V~sla~spdg~~LaSg 827 (837)
..+|.++.|...+-.|++|
T Consensus 685 ~tpv~~l~FtrrNl~L~~g 703 (707)
T KOG0263|consen 685 NTPVVGLHFTRRNLLLAVG 703 (707)
T ss_pred CceEEEEEEeccceeEEec
Confidence 5578888888766555554
|
|
| >KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-31 Score=294.85 Aligned_cols=288 Identities=21% Similarity=0.323 Sum_probs=259.3
Q ss_pred eEEEEecCCCCCeEEEEEc-CCCCEEEEEECCCcEEEEeCCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEE
Q 003236 546 TEFQLIPASTSKVESCHFS-PDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVW 624 (837)
Q Consensus 546 ~~~~~l~~H~~~V~sl~fS-pdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IW 624 (837)
.....+-|..+.|.+++|- |+..+||+++..+.+++|++.+..+. .+.+|++.|.++....+|-+|+||+.|+++++|
T Consensus 314 ~i~k~ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~-ii~GH~e~vlSL~~~~~g~llat~sKD~svilW 392 (775)
T KOG0319|consen 314 TIVKQIVGYNDEILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQ-IIPGHTEAVLSLDVWSSGDLLATGSKDKSVILW 392 (775)
T ss_pred EEehhhcCCchhheeeeecCCccceEEEEeCCCceEEEecCCCceE-EEeCchhheeeeeecccCcEEEEecCCceEEEE
Confidence 3445566888899999875 57789999999999999998887776 888999999999966678899999999999999
Q ss_pred EcCCCC---ceeEEeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeee---eEE-------ecCCCeeEEEEe
Q 003236 625 DTENPD---YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCA---GVF-------KCQSGATQMRFQ 691 (837)
Q Consensus 625 Dl~~~~---~~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i---~~~-------~~~~~i~sl~~s 691 (837)
.++++. .++....+|++.|.+++++..+..+|++++.|++|++|++...+.. ..+ .+...|+|++++
T Consensus 393 r~~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia 472 (775)
T KOG0319|consen 393 RLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIA 472 (775)
T ss_pred EecCCcchhhhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEec
Confidence 885432 2456678999999999999999999999999999999999762211 111 246679999999
Q ss_pred cCCCEEEEEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCc
Q 003236 692 PRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNK 770 (837)
Q Consensus 692 p~g~~llags~dg~I~iwDl~s~~~~~~l~~h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~ 770 (837)
|+.+.|++|+.|.+.+||+++......++.+|...|.|+.|++....+++++ |++|+||.+.+. .|+.++.+|...
T Consensus 473 ~ndkLiAT~SqDktaKiW~le~~~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~f---SClkT~eGH~~a 549 (775)
T KOG0319|consen 473 PNDKLIATGSQDKTAKIWDLEQLRLLGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTF---SCLKTFEGHTSA 549 (775)
T ss_pred CCCceEEecccccceeeecccCceEEEEeeCCccceEEEEeccccceeEeccCCceEEEEEeccc---eeeeeecCccce
Confidence 9999999999999999999999999999999999999999999999999999 999999999988 899999999999
Q ss_pred eEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE-EeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 003236 771 FHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 837 (837)
Q Consensus 771 I~sv~fspdg~~L~sgs~dg~I~IwDl~s~~~~-~l~~h~~~V~sla~spdg~~LaSgs~DG~I~IWd 837 (837)
|..+.|-.++..|++++.||-|++|+++++.++ ++..|.+.|++++.++...+++||+.||.|.+|+
T Consensus 550 Vlra~F~~~~~qliS~~adGliKlWnikt~eC~~tlD~H~DrvWaL~~~~~~~~~~tgg~Dg~i~~wk 617 (775)
T KOG0319|consen 550 VLRASFIRNGKQLISAGADGLIKLWNIKTNECEMTLDAHNDRVWALSVSPLLDMFVTGGGDGRIIFWK 617 (775)
T ss_pred eEeeeeeeCCcEEEeccCCCcEEEEeccchhhhhhhhhccceeEEEeecCccceeEecCCCeEEEEee
Confidence 999999999999999999999999999999998 8899999999999999999999999999999995
|
|
| >KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-31 Score=299.38 Aligned_cols=252 Identities=23% Similarity=0.430 Sum_probs=220.8
Q ss_pred CCccccCCCeEEcccCCCceEEeecCCCC----------C-----CCCccccccccCCCeeeeEEEEecCCCCCeEEEEE
Q 003236 499 PNQLTDMDRFVDDGSLDDNVESFLSPDDA----------D-----PRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHF 563 (837)
Q Consensus 499 ~~~l~~~~~~v~~Gs~D~~v~~w~s~~~~----------~-----~~~~~~~~~~~~~g~~~~~~~~l~~H~~~V~sl~f 563 (837)
...+.+....+|.|-.|..|++|...... . ..+......+..++ ...+.+.+|.++|..+.|
T Consensus 383 ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~---~~~~~L~GH~GPVyg~sF 459 (707)
T KOG0263|consen 383 CAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSS---GTSRTLYGHSGPVYGCSF 459 (707)
T ss_pred eEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCC---ceeEEeecCCCceeeeee
Confidence 34456666789999999999999665311 0 01112222222222 334558899999999999
Q ss_pred cCCCCEEEEEECCCcEEEEeCCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeEEeeccccce
Q 003236 564 SPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTV 643 (837)
Q Consensus 564 Spdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V 643 (837)
+|+.++|++++.|++|++|.+.+..++..+.+|..+|+++.|+|.|-|+||+|.|++.++|..+.. .+.+.+.+|-+.|
T Consensus 460 sPd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~~-~PlRifaghlsDV 538 (707)
T KOG0263|consen 460 SPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWSTDHN-KPLRIFAGHLSDV 538 (707)
T ss_pred cccccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCCceEEEecCCCceeeeeecccC-Cchhhhccccccc
Confidence 999999999999999999999999999999999999999999999999999999999999999974 4699999999999
Q ss_pred EEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeeEEec-CCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEcC
Q 003236 644 MSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQG 722 (837)
Q Consensus 644 ~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~-~~~i~sl~~sp~g~~llags~dg~I~iwDl~s~~~~~~l~~ 722 (837)
.|+.|+|+.. ++++|+.|.+|++||+.+|..++.|.. .+.|.+++|+|+|.+|++|+.|+.|.+||+.++..+..+.+
T Consensus 539 ~cv~FHPNs~-Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~~v~~l~~ 617 (707)
T KOG0263|consen 539 DCVSFHPNSN-YVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYLASGDEDGLIKIWDLANGSLVKQLKG 617 (707)
T ss_pred ceEEECCccc-ccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceEeecccCCcEEEEEcCCCcchhhhhc
Confidence 9999999965 777999999999999999999999986 56799999999999999999999999999999999999999
Q ss_pred CCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCC
Q 003236 723 HKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSG 755 (837)
Q Consensus 723 h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~ 755 (837)
|++.|.++.|+.||..|++++ |..|++||+...
T Consensus 618 Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~ 651 (707)
T KOG0263|consen 618 HTGTIYSLSFSRDGNVLASGGADNSVRLWDLTKV 651 (707)
T ss_pred ccCceeEEEEecCCCEEEecCCCCeEEEEEchhh
Confidence 999999999999999999999 999999998753
|
|
| >KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.7e-30 Score=289.22 Aligned_cols=316 Identities=19% Similarity=0.275 Sum_probs=263.5
Q ss_pred CCccccCCCeEEcccCCCceEEeecCCCCCCCCccccccccCCCeeeeEEEEecCCCCCeEEEEEcCCCC--EEEEEECC
Q 003236 499 PNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGK--LLATGGHD 576 (837)
Q Consensus 499 ~~~l~~~~~~v~~Gs~D~~v~~w~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~H~~~V~sl~fSpdg~--~Lasgs~D 576 (837)
...+++...++++|+.|+.+++|+.... .....|+||.+.|.++.|+|+-. +|++|..|
T Consensus 110 ~ma~~~~g~LlAtggaD~~v~VWdi~~~-------------------~~th~fkG~gGvVssl~F~~~~~~~lL~sg~~D 170 (775)
T KOG0319|consen 110 TMAFDPTGTLLATGGADGRVKVWDIKNG-------------------YCTHSFKGHGGVVSSLLFHPHWNRWLLASGATD 170 (775)
T ss_pred EEEEcCCCceEEeccccceEEEEEeeCC-------------------EEEEEecCCCceEEEEEeCCccchhheeecCCC
Confidence 4455666789999999999999966443 35678999999999999999755 58999999
Q ss_pred CcEEEEeCCCCeE-EEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCC-------------------------
Q 003236 577 KKAVLWCTESFTV-KSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPD------------------------- 630 (837)
Q Consensus 577 g~I~VWd~~t~~~-~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~~~------------------------- 630 (837)
++|++||+.+... +.++..|.+.|++++|++|+..+++++.|..|.|||+.+-+
T Consensus 171 ~~v~vwnl~~~~tcl~~~~~H~S~vtsL~~~~d~~~~ls~~RDkvi~vwd~~~~~~l~~lp~ye~~E~vv~l~~~~~~~~ 250 (775)
T KOG0319|consen 171 GTVRVWNLNDKRTCLHTMILHKSAVTSLAFSEDSLELLSVGRDKVIIVWDLVQYKKLKTLPLYESLESVVRLREELGGKG 250 (775)
T ss_pred ceEEEEEcccCchHHHHHHhhhhheeeeeeccCCceEEEeccCcEEEEeehhhhhhhheechhhheeeEEEechhcCCcc
Confidence 9999999985544 77788999999999999999999999999999999875100
Q ss_pred --------------------------------------------------------------------------------
Q 003236 631 -------------------------------------------------------------------------------- 630 (837)
Q Consensus 631 -------------------------------------------------------------------------------- 630 (837)
T Consensus 251 ~~~~TaG~~g~~~~~d~es~~~~~~~~~~~~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l~i~k~ivG~ndEI~Dm~ 330 (775)
T KOG0319|consen 251 EYIITAGGSGVVQYWDSESGKCVYKQRQSDSEEIDHLLAIESMSQLLLVTAEQNLFLYDEDELTIVKQIVGYNDEILDMK 330 (775)
T ss_pred eEEEEecCCceEEEEecccchhhhhhccCCchhhhcceeccccCceEEEEccceEEEEEccccEEehhhcCCchhheeee
Confidence
Q ss_pred ---------------c----------eeEEeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeee----eEEe-
Q 003236 631 ---------------Y----------SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCA----GVFK- 680 (837)
Q Consensus 631 ---------------~----------~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i----~~~~- 680 (837)
. ....+.+|+..|.+++...+| .++++|+.|.++++|.++++... ....
T Consensus 331 ~lG~e~~~laVATNs~~lr~y~~~~~~c~ii~GH~e~vlSL~~~~~g-~llat~sKD~svilWr~~~~~~~~~~~a~~~g 409 (775)
T KOG0319|consen 331 FLGPEESHLAVATNSPELRLYTLPTSYCQIIPGHTEAVLSLDVWSSG-DLLATGSKDKSVILWRLNNNCSKSLCVAQANG 409 (775)
T ss_pred ecCCccceEEEEeCCCceEEEecCCCceEEEeCchhheeeeeecccC-cEEEEecCCceEEEEEecCCcchhhhhhhhcc
Confidence 0 012345688888888854454 58899999999999988544322 2222
Q ss_pred cCCCeeEEEEecCC-CEEEEEEcCCeEEEEECCCCeE-----EE----EEcCCCCCEEEEEEcCCCCEEEEEe-CCeEEE
Q 003236 681 CQSGATQMRFQPRL-GRILAAAIENYISILDVETQVC-----RL----KLQGHKNQVHSVCWNTSGEYLASVS-DELVRV 749 (837)
Q Consensus 681 ~~~~i~sl~~sp~g-~~llags~dg~I~iwDl~s~~~-----~~----~l~~h~~~V~sl~~spdg~~Lasgs-Dg~I~I 749 (837)
+...|.+++++..+ .+|++++.|.+|++|++...+. +. ....|...|+|++++|+.++|++|+ |.+.+|
T Consensus 410 H~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKi 489 (775)
T KOG0319|consen 410 HTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKI 489 (775)
T ss_pred cccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCCceEEecccccceee
Confidence 35668888887654 4678889999999999986221 11 2346999999999999999999999 999999
Q ss_pred EEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE-EeccCCCCeeEEEEeCCCCEEEEEE
Q 003236 750 WSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASAS 828 (837)
Q Consensus 750 wDl~s~~~~~~i~~~~~~~~~I~sv~fspdg~~L~sgs~dg~I~IwDl~s~~~~-~l~~h~~~V~sla~spdg~~LaSgs 828 (837)
|++... ....++.+|...+.++.|++....+++++.|.+|+||.+.+..++ ++.+|...|..+.|-.+++.|++|+
T Consensus 490 W~le~~---~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSClkT~eGH~~aVlra~F~~~~~qliS~~ 566 (775)
T KOG0319|consen 490 WDLEQL---RLLGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCLKTFEGHTSAVLRASFIRNGKQLISAG 566 (775)
T ss_pred ecccCc---eEEEEeeCCccceEEEEeccccceeEeccCCceEEEEEeccceeeeeecCccceeEeeeeeeCCcEEEecc
Confidence 999865 888999999999999999999999999999999999999999999 8889999999999999999999999
Q ss_pred CCCcEEEeC
Q 003236 829 HDKCVKIWK 837 (837)
Q Consensus 829 ~DG~I~IWd 837 (837)
.||.|+||+
T Consensus 567 adGliKlWn 575 (775)
T KOG0319|consen 567 ADGLIKLWN 575 (775)
T ss_pred CCCcEEEEe
Confidence 999999996
|
|
| >KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.97 E-value=8e-32 Score=282.27 Aligned_cols=269 Identities=23% Similarity=0.414 Sum_probs=231.4
Q ss_pred CCCeEEcccCCCceEEeecCCCCCCCCccccccccCCCeeeeEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEeC
Q 003236 505 MDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCT 584 (837)
Q Consensus 505 ~~~~v~~Gs~D~~v~~w~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~H~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~ 584 (837)
..+.+.+|+..+.+.+|. +..|.....+.+|..+|+++.|+++|.++++|+.+|.|++|+.
T Consensus 107 eGRRLltgs~SGEFtLWN-------------------g~~fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqp 167 (464)
T KOG0284|consen 107 EGRRLLTGSQSGEFTLWN-------------------GTSFNFETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQP 167 (464)
T ss_pred CCceeEeecccccEEEec-------------------CceeeHHHHhhhhcccceeEEEccCCCEEEEcCCCceEEeccc
Confidence 336788999999999992 3344445567899999999999999999999999999999996
Q ss_pred CCCeEEEEec-cCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeEEeeccccceEEEEEcCCCCeEEEEEeCCC
Q 003236 585 ESFTVKSTLE-EHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNS 663 (837)
Q Consensus 585 ~t~~~~~~l~-~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg 663 (837)
.- ..+..+. .|...|.+++|+|+...|++||.||+|+|||....+. -+.+.+|.-.|.|++|+|... ++++++.|.
T Consensus 168 nm-nnVk~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~ke-e~vL~GHgwdVksvdWHP~kg-LiasgskDn 244 (464)
T KOG0284|consen 168 NM-NNVKIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKE-ERVLRGHGWDVKSVDWHPTKG-LIASGSKDN 244 (464)
T ss_pred ch-hhhHHhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCch-hheeccCCCCcceeccCCccc-eeEEccCCc
Confidence 54 3444444 4559999999999999999999999999999987664 567799999999999999955 888999999
Q ss_pred cEEEEECCCCeeeeEEec-CCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEcCCC-CEEEE
Q 003236 664 EIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSG-EYLAS 741 (837)
Q Consensus 664 ~I~vwDl~t~~~i~~~~~-~~~i~sl~~sp~g~~llags~dg~I~iwDl~s~~~~~~l~~h~~~V~sl~~spdg-~~Las 741 (837)
.|++||.+++.|+.++.. ...|..+.|++++++|++++.|..+++||+++.+.+..+++|+..|+++.|+|-. .+|++
T Consensus 245 lVKlWDprSg~cl~tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~r~Hkkdv~~~~WhP~~~~lfts 324 (464)
T KOG0284|consen 245 LVKLWDPRSGSCLATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFTYRGHKKDVTSLTWHPLNESLFTS 324 (464)
T ss_pred eeEeecCCCcchhhhhhhccceEEEEEEcCCCCeeEEccCCceEEEEehhHhHHHHHhhcchhhheeeccccccccceee
Confidence 999999999999988865 5679999999999999999999999999999999999999999999999999954 46666
Q ss_pred Ee-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEEC
Q 003236 742 VS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNM 797 (837)
Q Consensus 742 gs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fspdg~~L~sgs~dg~I~IwDl 797 (837)
|+ ||.|..|.+...+ .....-..|...|++++|+|-|..|++|+.|.++++|.-
T Consensus 325 gg~Dgsvvh~~v~~~~--p~~~i~~AHd~~iwsl~~hPlGhil~tgsnd~t~rfw~r 379 (464)
T KOG0284|consen 325 GGSDGSVVHWVVGLEE--PLGEIPPAHDGEIWSLAYHPLGHILATGSNDRTVRFWTR 379 (464)
T ss_pred ccCCCceEEEeccccc--cccCCCcccccceeeeeccccceeEeecCCCcceeeecc
Confidence 66 9999999998442 222334568899999999999999999999999999974
|
|
| >KOG0295 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.6e-30 Score=269.43 Aligned_cols=278 Identities=24% Similarity=0.437 Sum_probs=249.3
Q ss_pred ccCCCccccCCCeEEcccCCCceEEeecCCCCCCCCccccccccCCCeeeeEEEEecCCCCCeEEEEEcCCCCEEEEEEC
Q 003236 496 TSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGH 575 (837)
Q Consensus 496 ~~~~~~l~~~~~~v~~Gs~D~~v~~w~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~H~~~V~sl~fSpdg~~Lasgs~ 575 (837)
++..+.+.+...++++.+.|.++++|+.... ...+.+++|++.|.+|+|+..|++||+++.
T Consensus 110 ~vt~v~~hp~~~~v~~as~d~tikv~D~~tg-------------------~~e~~LrGHt~sv~di~~~a~Gk~l~tcSs 170 (406)
T KOG0295|consen 110 SVTRVIFHPSEALVVSASEDATIKVFDTETG-------------------ELERSLRGHTDSVFDISFDASGKYLATCSS 170 (406)
T ss_pred ceeeeeeccCceEEEEecCCceEEEEEccch-------------------hhhhhhhccccceeEEEEecCccEEEecCC
Confidence 3444445566678899999999999966443 225678999999999999999999999999
Q ss_pred CCcEEEEeCCC-CeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeEEeeccccceEEEEEcCCCCe
Q 003236 576 DKKAVLWCTES-FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKED 654 (837)
Q Consensus 576 Dg~I~VWd~~t-~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~sl~fspdg~~ 654 (837)
|-.+.+||..+ .++++.+.+|...|.+++|-|.|.+|++++.|.+|+.|++.++. ++.++.+|...|..+..+.||.
T Consensus 171 Dl~~~LWd~~~~~~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~-cv~t~~~h~ewvr~v~v~~DGt- 248 (406)
T KOG0295|consen 171 DLSAKLWDFDTFFRCIKSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGY-CVKTFPGHSEWVRMVRVNQDGT- 248 (406)
T ss_pred ccchhheeHHHHHHHHHHhcCcccceeeEEEEecCCeeeecccccceeEEecccce-eEEeccCchHhEEEEEecCCee-
Confidence 99999999987 67788888999999999999999999999999999999999865 6999999999999999999865
Q ss_pred EEEEEeCCCcEEEEECCCCeeeeEEec-CCCeeEEEEecC---------------CCEEEEEEcCCeEEEEECCCCeEEE
Q 003236 655 LLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPR---------------LGRILAAAIENYISILDVETQVCRL 718 (837)
Q Consensus 655 llasgs~Dg~I~vwDl~t~~~i~~~~~-~~~i~sl~~sp~---------------g~~llags~dg~I~iwDl~s~~~~~ 718 (837)
++++|+.|.+|++|-+.++.|...++. ...|.|++|.|. +.++++++.|++|++||+.++.++.
T Consensus 249 i~As~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~ 328 (406)
T KOG0295|consen 249 IIASCSNDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLF 328 (406)
T ss_pred EEEecCCCceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEE
Confidence 889999999999999999988777764 456888888773 1378889999999999999999999
Q ss_pred EEcCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEEC
Q 003236 719 KLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNM 797 (837)
Q Consensus 719 ~l~~h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fspdg~~L~sgs~dg~I~IwDl 797 (837)
++.+|.++|..++|+|.|+||+++. |++++|||+.+. .|.+.+..|..-++++.|+.+..++++|+-|-++++|..
T Consensus 329 tL~ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~---~cmk~~~ah~hfvt~lDfh~~~p~VvTGsVdqt~KvwEc 405 (406)
T KOG0295|consen 329 TLVGHDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNL---QCMKTLEAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWEC 405 (406)
T ss_pred EEecccceeeeeEEcCCCeEEEEEecCCcEEEEEeccc---eeeeccCCCcceeEEEecCCCCceEEeccccceeeeeec
Confidence 9999999999999999999999999 889999999988 899999999999999999999999999999999999974
|
|
| >KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.4e-30 Score=251.04 Aligned_cols=280 Identities=18% Similarity=0.347 Sum_probs=242.7
Q ss_pred EEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEc
Q 003236 547 EFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDT 626 (837)
Q Consensus 547 ~~~~l~~H~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl 626 (837)
+...+..|.++|..+.|+-||+|.++++.|.+|++|+...+.+++++.+|...|.+++.+.|+..|++|+.|+.|.+||+
T Consensus 9 r~~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV 88 (307)
T KOG0316|consen 9 RLSILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDV 88 (307)
T ss_pred hceeecccccceEEEEEccCCCEEEEcCCCceEEeecccccceeeeecCCCceeeeccccccccccccCCCCceEEEEEc
Confidence 46778899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCceeEEeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCC--eeeeEEec-CCCeeEEEEecCCCEEEEEEcC
Q 003236 627 ENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNG--SCAGVFKC-QSGATQMRFQPRLGRILAAAIE 703 (837)
Q Consensus 627 ~~~~~~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~--~~i~~~~~-~~~i~sl~~sp~g~~llags~d 703 (837)
++++. ++.+.+|.+.|+.+.|+.+. .++++|+.|.++++||.++. +++..+.. ...|.++.+.. ..|++|+.|
T Consensus 89 ~TGkv-~Rr~rgH~aqVNtV~fNees-SVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~~--heIvaGS~D 164 (307)
T KOG0316|consen 89 NTGKV-DRRFRGHLAQVNTVRFNEES-SVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVAE--HEIVAGSVD 164 (307)
T ss_pred ccCee-eeecccccceeeEEEecCcc-eEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEecc--cEEEeeccC
Confidence 99875 89999999999999999874 58889999999999999864 45555543 46688887764 579999999
Q ss_pred CeEEEEECCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCc--eEEEEEeCCC
Q 003236 704 NYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNK--FHSCVFHPTF 780 (837)
Q Consensus 704 g~I~iwDl~s~~~~~~l~~h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~--I~sv~fspdg 780 (837)
|+++.||++.+.....+-+ .+|+|++|++|++.+++++ |++|++.|-.++ +.+..+++|.+. -..+++....
T Consensus 165 GtvRtydiR~G~l~sDy~g--~pit~vs~s~d~nc~La~~l~stlrLlDk~tG---klL~sYkGhkn~eykldc~l~qsd 239 (307)
T KOG0316|consen 165 GTVRTYDIRKGTLSSDYFG--HPITSVSFSKDGNCSLASSLDSTLRLLDKETG---KLLKSYKGHKNMEYKLDCCLNQSD 239 (307)
T ss_pred CcEEEEEeecceeehhhcC--CcceeEEecCCCCEEEEeeccceeeecccchh---HHHHHhcccccceeeeeeeecccc
Confidence 9999999999987766654 4899999999999998888 999999999998 667777777654 3566788888
Q ss_pred CEEEEEEcCCeEEEEECCCCcEE-EeccCCCC-eeEEEEeCCCCEEEEEECCCcEEEe
Q 003236 781 PSLLVIGCYETLELWNMTENKTL-TLSAHDKL-VSSLAASTVNGMVASASHDKCVKIW 836 (837)
Q Consensus 781 ~~L~sgs~dg~I~IwDl~s~~~~-~l~~h~~~-V~sla~spdg~~LaSgs~DG~I~IW 836 (837)
.++++|+.||.|++||+.+...+ .+..|... |.+++++|.-..|+++.. +.+.+|
T Consensus 240 thV~sgSEDG~Vy~wdLvd~~~~sk~~~~~~v~v~dl~~hp~~~~f~~A~~-~~~~~~ 296 (307)
T KOG0316|consen 240 THVFSGSEDGKVYFWDLVDETQISKLSVVSTVIVTDLSCHPTMDDFITATG-HGDLFW 296 (307)
T ss_pred eeEEeccCCceEEEEEeccceeeeeeccCCceeEEeeecccCccceeEecC-Cceece
Confidence 89999999999999999998888 56666666 899999998877777754 345555
|
|
| >KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.97 E-value=5e-30 Score=285.26 Aligned_cols=281 Identities=20% Similarity=0.390 Sum_probs=255.3
Q ss_pred EEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCC
Q 003236 549 QLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTEN 628 (837)
Q Consensus 549 ~~l~~H~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~ 628 (837)
..+.+|...|.++++|.|...+++|+ .+.|+||+.++.++++++.. +.+.+..|.|.++++++|...|.+.|||+..
T Consensus 367 i~~~GHR~dVRsl~vS~d~~~~~Sga-~~SikiWn~~t~kciRTi~~--~y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS 443 (888)
T KOG0306|consen 367 IEIGGHRSDVRSLCVSSDSILLASGA-GESIKIWNRDTLKCIRTITC--GYILASKFVPGDRYIVLGTKNGELQVFDLAS 443 (888)
T ss_pred eeeccchhheeEEEeecCceeeeecC-CCcEEEEEccCcceeEEecc--ccEEEEEecCCCceEEEeccCCceEEEEeeh
Confidence 34679999999999999988888776 47899999999999999964 4899999999999999999999999999998
Q ss_pred CCceeEEeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCC-----Cee--------eeEEecCCCeeEEEEecCCC
Q 003236 629 PDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN-----GSC--------AGVFKCQSGATQMRFQPRLG 695 (837)
Q Consensus 629 ~~~~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t-----~~~--------i~~~~~~~~i~sl~~sp~g~ 695 (837)
... +.++..|.+.|++++.+||+..++ +++.|.+|++||..- +.. .+++.....|.|+.++||++
T Consensus 444 ~~l-~Eti~AHdgaIWsi~~~pD~~g~v-T~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk 521 (888)
T KOG0306|consen 444 ASL-VETIRAHDGAIWSISLSPDNKGFV-TGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGK 521 (888)
T ss_pred hhh-hhhhhccccceeeeeecCCCCceE-EecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCCc
Confidence 664 677779999999999999987555 999999999999742 111 13455578899999999999
Q ss_pred EEEEEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEE
Q 003236 696 RILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSC 774 (837)
Q Consensus 696 ~llags~dg~I~iwDl~s~~~~~~l~~h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv 774 (837)
+++++--|++|+||-+++-+....+.||.-+|.|+.++||++++++|+ |..|+||-+.-| .|-..+-.|...|.++
T Consensus 522 ~LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~DSklivTgSADKnVKiWGLdFG---DCHKS~fAHdDSvm~V 598 (888)
T KOG0306|consen 522 LLAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFG---DCHKSFFAHDDSVMSV 598 (888)
T ss_pred EEEEEeccCeEEEEEecceeeeeeecccccceeEEeccCCcCeEEeccCCCceEEeccccc---hhhhhhhcccCceeEE
Confidence 999999999999999999999999999999999999999999999999 999999999887 8888999999999999
Q ss_pred EEeCCCCEEEEEEcCCeEEEEECCCCcEE-EeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 003236 775 VFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 837 (837)
Q Consensus 775 ~fspdg~~L~sgs~dg~I~IwDl~s~~~~-~l~~h~~~V~sla~spdg~~LaSgs~DG~I~IWd 837 (837)
.|-|....+++++.|+.|+-||-..-+.+ .+.+|...|+|++.+|+|.+++++++|.+|++|.
T Consensus 599 ~F~P~~~~FFt~gKD~kvKqWDg~kFe~iq~L~~H~~ev~cLav~~~G~~vvs~shD~sIRlwE 662 (888)
T KOG0306|consen 599 QFLPKTHLFFTCGKDGKVKQWDGEKFEEIQKLDGHHSEVWCLAVSPNGSFVVSSSHDKSIRLWE 662 (888)
T ss_pred EEcccceeEEEecCcceEEeechhhhhhheeeccchheeeeeEEcCCCCeEEeccCCceeEeee
Confidence 99999999999999999999998887776 8899999999999999999999999999999995
|
|
| >KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.1e-29 Score=263.37 Aligned_cols=285 Identities=19% Similarity=0.245 Sum_probs=247.6
Q ss_pred EEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEc
Q 003236 547 EFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDT 626 (837)
Q Consensus 547 ~~~~l~~H~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl 626 (837)
.+..|..|++.|.+|+.+|+.+++|||+.|....||++.++.....+.+|++.|+++.|+.+|.+||||+.+|.|+||+.
T Consensus 56 S~~tF~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~ 135 (399)
T KOG0296|consen 56 SLVTFDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKV 135 (399)
T ss_pred ceeehhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCcceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEc
Confidence 46788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCceeEEeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeeEEec-CCCeeEEEEecCCCEEEEEEcCCe
Q 003236 627 ENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAIENY 705 (837)
Q Consensus 627 ~~~~~~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~-~~~i~sl~~sp~g~~llags~dg~ 705 (837)
.++.. ...+......|.-+.|+|.+. +|++|+.||.|.+|.+.+......+.. ..++++-.|.|+|++++++..||+
T Consensus 136 stg~~-~~~~~~e~~dieWl~WHp~a~-illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgt 213 (399)
T KOG0296|consen 136 STGGE-QWKLDQEVEDIEWLKWHPRAH-ILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGKRILTGYDDGT 213 (399)
T ss_pred ccCce-EEEeecccCceEEEEeccccc-EEEeecCCCcEEEEECCCcceeeEecCCCCCcccccccCCCceEEEEecCce
Confidence 98775 455555677899999999755 777999999999999998666666654 567999999999999999999999
Q ss_pred EEEEECCCCeEEEEEcCC-CCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEee--------cCC---CceE
Q 003236 706 ISILDVETQVCRLKLQGH-KNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELS--------CTG---NKFH 772 (837)
Q Consensus 706 I~iwDl~s~~~~~~l~~h-~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~--------~~~---~~I~ 772 (837)
|++|++.++.++..+... .....++.++..+..++.|+ ++.+++....++ +.+.... .+. ..|.
T Consensus 214 i~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sg---KVv~~~n~~~~~l~~~~e~~~esve 290 (399)
T KOG0296|consen 214 IIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSG---KVVNCNNGTVPELKPSQEELDESVE 290 (399)
T ss_pred EEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccc---eEEEecCCCCccccccchhhhhhhh
Confidence 999999999999888743 34577889999999999998 888998888777 3333333 222 3344
Q ss_pred EEEEeCCCCEEEEEEcCCeEEEEECCCCcEEEeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 003236 773 SCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 837 (837)
Q Consensus 773 sv~fspdg~~L~sgs~dg~I~IwDl~s~~~~~l~~h~~~V~sla~spdg~~LaSgs~DG~I~IWd 837 (837)
.+.++..-+..++|+-||+|.|||+...++.....|...|+.+.|-+ ..+|++++.||.|++||
T Consensus 291 ~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c~he~~V~~l~w~~-t~~l~t~c~~g~v~~wD 354 (399)
T KOG0296|consen 291 SIPSSSKLPLAACGSVDGTIAIYDLAASTLRHICEHEDGVTKLKWLN-TDYLLTACANGKVRQWD 354 (399)
T ss_pred hcccccccchhhcccccceEEEEecccchhheeccCCCceEEEEEcC-cchheeeccCceEEeee
Confidence 55566667888999999999999999999988889999999999998 78999999999999997
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.6e-30 Score=279.65 Aligned_cols=282 Identities=22% Similarity=0.400 Sum_probs=255.8
Q ss_pred EEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCC
Q 003236 549 QLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTEN 628 (837)
Q Consensus 549 ~~l~~H~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~ 628 (837)
+.+..|+.+|.||.|+|...+++++-..|.|.|||.++...++.+.....+|.+..|-...+++++|+.|..|+||+..+
T Consensus 7 rk~~~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtmVksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt 86 (794)
T KOG0276|consen 7 RKFQSRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNYNT 86 (794)
T ss_pred hHhhccCCceeeeecCCCCceEEEeeecCeeEEEecccceeeeeeeecccchhhheeeeccceEEEecCCceEEEEeccc
Confidence 34556899999999999999999999999999999999999999998999999999999999999999999999999999
Q ss_pred CCceeEEeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCC-CeeeeEEecCC-CeeEEEEecC-CCEEEEEEcCCe
Q 003236 629 PDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN-GSCAGVFKCQS-GATQMRFQPR-LGRILAAAIENY 705 (837)
Q Consensus 629 ~~~~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t-~~~i~~~~~~~-~i~sl~~sp~-g~~llags~dg~ 705 (837)
.+. ++.+..|...|.||+.+|...+ +++++.|-+|++||.+. ..|..+|..+. -|.+++|.|. .+.+++++-|++
T Consensus 87 ~ek-V~~FeAH~DyIR~iavHPt~P~-vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrT 164 (794)
T KOG0276|consen 87 GEK-VKTFEAHSDYIRSIAVHPTLPY-VLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRT 164 (794)
T ss_pred cee-eEEeeccccceeeeeecCCCCe-EEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceeeeecccc
Confidence 775 8999999999999999999775 45999999999999976 46777887654 4899999995 567899999999
Q ss_pred EEEEECCCCeEEEEEcCCCCCEEEEEEcCCC--CEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCE
Q 003236 706 ISILDVETQVCRLKLQGHKNQVHSVCWNTSG--EYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPS 782 (837)
Q Consensus 706 I~iwDl~s~~~~~~l~~h~~~V~sl~~spdg--~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fspdg~~ 782 (837)
|+||.+.+..+..++.+|...|+|+++-+.| .+|++|+ |.+|+|||..+. .|+.++.+|...|..++|+|.-+.
T Consensus 165 VKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk---~CV~TLeGHt~Nvs~v~fhp~lpi 241 (794)
T KOG0276|consen 165 VKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTK---SCVQTLEGHTNNVSFVFFHPELPI 241 (794)
T ss_pred EEEEEcCCCCCceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecchH---HHHHHhhcccccceEEEecCCCcE
Confidence 9999999999999999999999999998754 6999999 779999999987 899999999999999999999999
Q ss_pred EEEEEcCCeEEEEECCCCcEE-EeccCCCCeeEEEEeCCCCEEEEEECCCcEEE
Q 003236 783 LLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKI 835 (837)
Q Consensus 783 L~sgs~dg~I~IwDl~s~~~~-~l~~h~~~V~sla~spdg~~LaSgs~DG~I~I 835 (837)
|++|+.||+|+||+..+.+.. .+.-....|+||+-.+.++.++.|.+.|.|.|
T Consensus 242 iisgsEDGTvriWhs~Ty~lE~tLn~gleRvW~I~~~k~~~~i~vG~Deg~i~v 295 (794)
T KOG0276|consen 242 IISGSEDGTVRIWNSKTYKLEKTLNYGLERVWCIAAHKGDGKIAVGFDEGSVTV 295 (794)
T ss_pred EEEecCCccEEEecCcceehhhhhhcCCceEEEEeecCCCCeEEEeccCCcEEE
Confidence 999999999999999888776 55556678999999999999999999888764
|
|
| >KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.4e-29 Score=279.85 Aligned_cols=309 Identities=20% Similarity=0.277 Sum_probs=259.3
Q ss_pred CCeEEcccCCCceEEeecCCCCCCCCccccccccCCCeeeeEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCC
Q 003236 506 DRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTE 585 (837)
Q Consensus 506 ~~~v~~Gs~D~~v~~w~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~H~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~ 585 (837)
-.+++.|..|+.|++|..... ....++.+|...|+++.|+..|..||+|+.|+.|.|||+-
T Consensus 77 ~l~lAVGYaDGsVqif~~~s~-------------------~~~~tfngHK~AVt~l~fd~~G~rlaSGskDt~IIvwDlV 137 (888)
T KOG0306|consen 77 ILLLAVGYADGSVQIFSLESE-------------------EILITFNGHKAAVTTLKFDKIGTRLASGSKDTDIIVWDLV 137 (888)
T ss_pred cceEEEEecCceEEeeccCCC-------------------ceeeeecccccceEEEEEcccCceEeecCCCccEEEEEec
Confidence 346799999999999944322 2356788999999999999999999999999999999998
Q ss_pred CCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCC-----------------------------------
Q 003236 586 SFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPD----------------------------------- 630 (837)
Q Consensus 586 t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~~~----------------------------------- 630 (837)
...-...+++|++.|+..-|..+.++|++++.|+.|++||+++..
T Consensus 138 ~E~Gl~rL~GHkd~iT~~~F~~~~~~lvS~sKDs~iK~WdL~tqhCf~Thvd~r~Eiw~l~~~~~~lvt~~~dse~~v~~ 217 (888)
T KOG0306|consen 138 GEEGLFRLRGHKDSITQALFLNGDSFLVSVSKDSMIKFWDLETQHCFETHVDHRGEIWALVLDEKLLVTAGTDSELKVWE 217 (888)
T ss_pred cceeeEEeecchHHHhHHhccCCCeEEEEeccCceEEEEecccceeeeEEecccceEEEEEEecceEEEEecCCceEEEE
Confidence 888888888888888888888777888888888888888876110
Q ss_pred --------------------------------------------------------------------------------
Q 003236 631 -------------------------------------------------------------------------------- 630 (837)
Q Consensus 631 -------------------------------------------------------------------------------- 630 (837)
T Consensus 218 L~~~~D~~~~~~~~s~~~~G~~~rqsk~R~i~l~~d~s~r~~~c~g~d~~~e~frI~s~~E~~k~l~Kk~k~~Kkka~t~ 297 (888)
T KOG0306|consen 218 LAFEDDEKETNRYISTKLRGTFIRQSKGREINLVTDFSDRFLVCQGADKVIELFRIRSKEEIAKILSKKLKRAKKKAETE 297 (888)
T ss_pred eecccccccccccceeeccceeeeccCCceeEEeecCcccEEEEecchhhhhheeecCHHHHHHHHHHHHHHhhhhcccc
Confidence
Q ss_pred ------------------------------------ce------------------------------eEEeeccccceE
Q 003236 631 ------------------------------------YS------------------------------LRTFTGHSTTVM 644 (837)
Q Consensus 631 ------------------------------------~~------------------------------~~~~~~h~~~V~ 644 (837)
.. ...+.+|...|.
T Consensus 298 e~~~~v~~sl~~~i~r~~~ir~~~kiks~dv~~~~~~~~~lv~l~nNtv~~ysl~~s~~~~p~~~~~~~i~~~GHR~dVR 377 (888)
T KOG0306|consen 298 ENEDDVEKSLSDEIKRLETIRTSAKIKSFDVTPSGGTENTLVLLANNTVEWYSLENSGKTSPEADRTSNIEIGGHRSDVR 377 (888)
T ss_pred ccccchhhhHHHHHHHHHheechhheeEEEEEecCCcceeEEEeecCceEEEEeccCCCCCccccccceeeeccchhhee
Confidence 00 012335777788
Q ss_pred EEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeeEEecCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEcCCC
Q 003236 645 SLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHK 724 (837)
Q Consensus 645 sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~~~~i~sl~~sp~g~~llags~dg~I~iwDl~s~~~~~~l~~h~ 724 (837)
+++++.+. .++++++ .+.|++|+..+.+|++++.+. -+.+..|.|.++++++|...|.+.+||+.+...+.++..|.
T Consensus 378 sl~vS~d~-~~~~Sga-~~SikiWn~~t~kciRTi~~~-y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l~Eti~AHd 454 (888)
T KOG0306|consen 378 SLCVSSDS-ILLASGA-GESIKIWNRDTLKCIRTITCG-YILASKFVPGDRYIVLGTKNGELQVFDLASASLVETIRAHD 454 (888)
T ss_pred EEEeecCc-eeeeecC-CCcEEEEEccCcceeEEeccc-cEEEEEecCCCceEEEeccCCceEEEEeehhhhhhhhhccc
Confidence 88888764 3444544 789999999999999999985 88899999999999999999999999999999999999999
Q ss_pred CCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCC-----CCceeEE----EeecCCCceEEEEEeCCCCEEEEEEcCCeEEE
Q 003236 725 NQVHSVCWNTSGEYLASVS-DELVRVWSIGSG-----SKGECIH----ELSCTGNKFHSCVFHPTFPSLLVIGCYETLEL 794 (837)
Q Consensus 725 ~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~-----~~~~~i~----~~~~~~~~I~sv~fspdg~~L~sgs~dg~I~I 794 (837)
+.|.+++.+||++.+++++ |.+|++||+.-- ...+.+. ..-.-...|.++.+|||+++|+++--|.+|+|
T Consensus 455 gaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~LaVsLLdnTVkV 534 (888)
T KOG0306|consen 455 GAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGKLLAVSLLDNTVKV 534 (888)
T ss_pred cceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCCcEEEEEeccCeEEE
Confidence 9999999999999999999 999999997521 1111111 11123577999999999999999999999999
Q ss_pred EECCCCcEE-EeccCCCCeeEEEEeCCCCEEEEEECCCcEEEe
Q 003236 795 WNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIW 836 (837)
Q Consensus 795 wDl~s~~~~-~l~~h~~~V~sla~spdg~~LaSgs~DG~I~IW 836 (837)
|-+++-+.. .+++|.-+|.|+.++||+++++|||.|.+|+||
T Consensus 535 yflDtlKFflsLYGHkLPV~smDIS~DSklivTgSADKnVKiW 577 (888)
T KOG0306|consen 535 YFLDTLKFFLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIW 577 (888)
T ss_pred EEecceeeeeeecccccceeEEeccCCcCeEEeccCCCceEEe
Confidence 999999876 899999999999999999999999999999999
|
|
| >KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown] | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.7e-31 Score=272.41 Aligned_cols=267 Identities=21% Similarity=0.398 Sum_probs=233.7
Q ss_pred cCCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCc
Q 003236 552 PASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDY 631 (837)
Q Consensus 552 ~~H~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~~~~ 631 (837)
......|+|+.+. ...+++|..|++|+|||..+..+...+.+|++.|.|+.|. .+.|++||.|.+|+|||+.+++
T Consensus 194 Se~skgVYClQYD--D~kiVSGlrDnTikiWD~n~~~c~~~L~GHtGSVLCLqyd--~rviisGSSDsTvrvWDv~tge- 268 (499)
T KOG0281|consen 194 SENSKGVYCLQYD--DEKIVSGLRDNTIKIWDKNSLECLKILTGHTGSVLCLQYD--ERVIVSGSSDSTVRVWDVNTGE- 268 (499)
T ss_pred cccCCceEEEEec--chhhhcccccCceEEeccccHHHHHhhhcCCCcEEeeecc--ceEEEecCCCceEEEEeccCCc-
Confidence 3456779999985 4589999999999999999999999999999999999995 5699999999999999999977
Q ss_pred eeEEeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeee---eEEe-cCCCeeEEEEecCCCEEEEEEcCCeEE
Q 003236 632 SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCA---GVFK-CQSGATQMRFQPRLGRILAAAIENYIS 707 (837)
Q Consensus 632 ~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i---~~~~-~~~~i~sl~~sp~g~~llags~dg~I~ 707 (837)
++.++.+|...|..+.|+ +.++++|+.|.+|.+||+.....+ +++. +...|+.+.|+. ++|++++.|.+|+
T Consensus 269 ~l~tlihHceaVLhlrf~---ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd~--kyIVsASgDRTik 343 (499)
T KOG0281|consen 269 PLNTLIHHCEAVLHLRFS---NGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDD--KYIVSASGDRTIK 343 (499)
T ss_pred hhhHHhhhcceeEEEEEe---CCEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeecccc--ceEEEecCCceEE
Confidence 589999999999999998 448889999999999999875532 2222 245677787764 5999999999999
Q ss_pred EEECCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEE
Q 003236 708 ILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVI 786 (837)
Q Consensus 708 iwDl~s~~~~~~l~~h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fspdg~~L~sg 786 (837)
+|++.+++.+.++.+|...|-|+.+ .++++++|+ |.+|++||+..+ .++..+.+|+.-|.++.|.. +.|++|
T Consensus 344 vW~~st~efvRtl~gHkRGIAClQY--r~rlvVSGSSDntIRlwdi~~G---~cLRvLeGHEeLvRciRFd~--krIVSG 416 (499)
T KOG0281|consen 344 VWSTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECG---ACLRVLEGHEELVRCIRFDN--KRIVSG 416 (499)
T ss_pred EEeccceeeehhhhcccccceehhc--cCeEEEecCCCceEEEEecccc---HHHHHHhchHHhhhheeecC--ceeeec
Confidence 9999999999999999999998887 589999999 999999999998 89999999999999999965 479999
Q ss_pred EcCCeEEEEECCCCc---------E-EEeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 003236 787 GCYETLELWNMTENK---------T-LTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 837 (837)
Q Consensus 787 s~dg~I~IwDl~s~~---------~-~~l~~h~~~V~sla~spdg~~LaSgs~DG~I~IWd 837 (837)
+.||+|+|||+..+. + ..+..|.+.|..+.|. ...|++++.|.+|.|||
T Consensus 417 aYDGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQFD--~fqIvsssHddtILiWd 475 (499)
T KOG0281|consen 417 AYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQFD--EFQIISSSHDDTILIWD 475 (499)
T ss_pred cccceEEEEecccccCCcccccchHHHhhhhccceeEEEeec--ceEEEeccCCCeEEEEE
Confidence 999999999997653 1 2567899999999986 56799999999999997
|
|
| >KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.2e-29 Score=250.33 Aligned_cols=281 Identities=19% Similarity=0.243 Sum_probs=240.3
Q ss_pred EecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCC
Q 003236 550 LIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENP 629 (837)
Q Consensus 550 ~l~~H~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~~ 629 (837)
.+.+|..+|+-|.|+.+|.+|++++.|.++.||-..+|+.+-++.+|.+.|+||..+.+.++++||+.|.++++||++++
T Consensus 5 ~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tG 84 (327)
T KOG0643|consen 5 LLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETG 84 (327)
T ss_pred ccccCccccceEEecCCCcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCCC
Confidence 46799999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CceeEEeeccccceEEEEEcCCCCeEEEEEe----CCCcEEEEECC-------CCeeeeEEe-cCCCeeEEEEecCCCEE
Q 003236 630 DYSLRTFTGHSTTVMSLDFHPSKEDLLCSCD----NNSEIRYWSIN-------NGSCAGVFK-CQSGATQMRFQPRLGRI 697 (837)
Q Consensus 630 ~~~~~~~~~h~~~V~sl~fspdg~~llasgs----~Dg~I~vwDl~-------t~~~i~~~~-~~~~i~sl~~sp~g~~l 697 (837)
+. +..+. ...+|..+.|+++|+.++++.. ..+.|.++|++ ..++...+. ..+.++.+.|.|-+..|
T Consensus 85 k~-la~~k-~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~i 162 (327)
T KOG0643|consen 85 KQ-LATWK-TNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGETI 162 (327)
T ss_pred cE-EEEee-cCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCCEE
Confidence 85 44443 4678999999999887776553 34789999998 344444444 46789999999999999
Q ss_pred EEEEcCCeEEEEECCCC-eEEEEEcCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEE
Q 003236 698 LAAAIENYISILDVETQ-VCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCV 775 (837)
Q Consensus 698 lags~dg~I~iwDl~s~-~~~~~l~~h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~ 775 (837)
++|..+|.|.+||++++ +.+.....|...|+.+.+++|..++++++ |.+-++||+++. .++.++.. ..++++.+
T Consensus 163 i~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl---~v~Kty~t-e~PvN~aa 238 (327)
T KOG0643|consen 163 IAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTL---EVLKTYTT-ERPVNTAA 238 (327)
T ss_pred EEecCCCcEEEEEcccCceeeechhhhccccccccccCCcceEEecccCccceeeeccce---eeEEEeee-ccccccee
Confidence 99999999999999998 55566678999999999999999999999 999999999987 66666654 67899999
Q ss_pred EeCCCCEEEEEEcCCe--EEEEECCCCc------------EE-EeccCCCCeeEEEEeCCCCEEEEEECCCcEEEe
Q 003236 776 FHPTFPSLLVIGCYET--LELWNMTENK------------TL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIW 836 (837)
Q Consensus 776 fspdg~~L~sgs~dg~--I~IwDl~s~~------------~~-~l~~h~~~V~sla~spdg~~LaSgs~DG~I~IW 836 (837)
++|-..+++.|+.... |.--+.+.++ .+ ++.+|-++|++++|+|+|+..++|+.||.|+|.
T Consensus 239 isP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhPdGksYsSGGEDG~VR~h 314 (327)
T KOG0643|consen 239 ISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHPDGKSYSSGGEDGYVRLH 314 (327)
T ss_pred cccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccccCcceeEECCCCcccccCCCCceEEEE
Confidence 9999998888877553 2222333332 22 678999999999999999999999999999984
|
|
| >cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto | Back alignment and domain information |
|---|
Probab=99.97 E-value=4e-28 Score=255.34 Aligned_cols=267 Identities=30% Similarity=0.536 Sum_probs=236.1
Q ss_pred CCeEEcccCCCceEEeecCCCCCCCCccccccccCCCeeeeEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCC
Q 003236 506 DRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTE 585 (837)
Q Consensus 506 ~~~v~~Gs~D~~v~~w~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~H~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~ 585 (837)
..++++++.|+.+.+|...... ....+..|...|.++.|++++++|++++.||.|++||+.
T Consensus 21 ~~~l~~~~~~g~i~i~~~~~~~-------------------~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~ 81 (289)
T cd00200 21 GKLLATGSGDGTIKVWDLETGE-------------------LLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLE 81 (289)
T ss_pred CCEEEEeecCcEEEEEEeeCCC-------------------cEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcC
Confidence 4678888889999999654331 345567899999999999999999999999999999999
Q ss_pred CCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeEEeeccccceEEEEEcCCCCeEEEEEeCCCcE
Q 003236 586 SFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEI 665 (837)
Q Consensus 586 t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I 665 (837)
+++.+..+..|...|.++.|++++.++++++.|+.|++||+.+.+ ....+..|...|.+++|+|++. ++++++.|+.|
T Consensus 82 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~~~~i 159 (289)
T cd00200 82 TGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGK-CLTTLRGHTDWVNSVAFSPDGT-FVASSSQDGTI 159 (289)
T ss_pred cccceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcE-EEEEeccCCCcEEEEEEcCcCC-EEEEEcCCCcE
Confidence 988888888999999999999998889988889999999998654 3666778999999999999854 66677779999
Q ss_pred EEEECCCCeeeeEEecCC-CeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEe-
Q 003236 666 RYWSINNGSCAGVFKCQS-GATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS- 743 (837)
Q Consensus 666 ~vwDl~t~~~i~~~~~~~-~i~sl~~sp~g~~llags~dg~I~iwDl~s~~~~~~l~~h~~~V~sl~~spdg~~Lasgs- 743 (837)
++||+++++.+..+..+. .+.++.|+|++..+++++.++.|.+||++.++.+..+..|...|.+++|++++.++++++
T Consensus 160 ~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 239 (289)
T cd00200 160 KLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASGSE 239 (289)
T ss_pred EEEEccccccceeEecCccccceEEECCCcCEEEEecCCCcEEEEECCCCceecchhhcCCceEEEEEcCCCcEEEEEcC
Confidence 999999888887777544 799999999999999999999999999999998888888999999999999999999998
Q ss_pred CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEE
Q 003236 744 DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWN 796 (837)
Q Consensus 744 Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fspdg~~L~sgs~dg~I~IwD 796 (837)
|+.|++||+.++ ..+..+..+...+.+++|++++..|++++.|+.|++|+
T Consensus 240 ~~~i~i~~~~~~---~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 240 DGTIRVWDLRTG---ECVQTLSGHTNSVTSLAWSPDGKRLASGSADGTIRIWD 289 (289)
T ss_pred CCcEEEEEcCCc---eeEEEccccCCcEEEEEECCCCCEEEEecCCCeEEecC
Confidence 999999999876 56667778888999999999999999999999999996
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.97 E-value=8.5e-29 Score=270.44 Aligned_cols=272 Identities=20% Similarity=0.292 Sum_probs=243.3
Q ss_pred CccccCCCeEEcccCCCceEEeecCCCCCCCCccccccccCCCeeeeEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcE
Q 003236 500 NQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKA 579 (837)
Q Consensus 500 ~~l~~~~~~v~~Gs~D~~v~~w~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~H~~~V~sl~fSpdg~~Lasgs~Dg~I 579 (837)
..+.+.+.++.++-..++|.+|..... ..++.+.-..-+|.++.|-+..+++++|+.|..|
T Consensus 19 Vd~HPtePw~la~LynG~V~IWnyetq-------------------tmVksfeV~~~PvRa~kfiaRknWiv~GsDD~~I 79 (794)
T KOG0276|consen 19 VDFHPTEPWILAALYNGDVQIWNYETQ-------------------TMVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQI 79 (794)
T ss_pred eecCCCCceEEEeeecCeeEEEecccc-------------------eeeeeeeecccchhhheeeeccceEEEecCCceE
Confidence 345667788899999999999955332 3466677778889999999999999999999999
Q ss_pred EEEeCCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeEEeeccccceEEEEEcCCCCeEEEEE
Q 003236 580 VLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSC 659 (837)
Q Consensus 580 ~VWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~sl~fspdg~~llasg 659 (837)
+||+..+++.+..++.|.+.|.||+.+|...+++|+|.|-+|++||.+..-.+..++.+|...|++++|+|....-++++
T Consensus 80 rVfnynt~ekV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~ 159 (794)
T KOG0276|consen 80 RVFNYNTGEKVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASA 159 (794)
T ss_pred EEEecccceeeEEeeccccceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceeee
Confidence 99999999999999999999999999999999999999999999999988888899999999999999999999999999
Q ss_pred eCCCcEEEEECCCCeeeeEEec-CCCeeEEEEecCC--CEEEEEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEcCCC
Q 003236 660 DNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRL--GRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSG 736 (837)
Q Consensus 660 s~Dg~I~vwDl~t~~~i~~~~~-~~~i~sl~~sp~g--~~llags~dg~I~iwDl~s~~~~~~l~~h~~~V~sl~~spdg 736 (837)
+-|++|+||.+....+..++.. ..+|+|++|-+.+ .++++|+.|..|+|||..+..|+.++.+|...|..++|+|.-
T Consensus 160 sLDrTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGHt~Nvs~v~fhp~l 239 (794)
T KOG0276|consen 160 SLDRTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEGHTNNVSFVFFHPEL 239 (794)
T ss_pred eccccEEEEEcCCCCCceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecchHHHHHHhhcccccceEEEecCCC
Confidence 9999999999999998888875 5689999998754 589999999999999999999999999999999999999999
Q ss_pred CEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEE
Q 003236 737 EYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLE 793 (837)
Q Consensus 737 ~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fspdg~~L~sgs~dg~I~ 793 (837)
.+|++|+ ||+|+||+..+- +...++.-....+++++-.+.+..+++|..+|.|.
T Consensus 240 piiisgsEDGTvriWhs~Ty---~lE~tLn~gleRvW~I~~~k~~~~i~vG~Deg~i~ 294 (794)
T KOG0276|consen 240 PIIISGSEDGTVRIWNSKTY---KLEKTLNYGLERVWCIAAHKGDGKIAVGFDEGSVT 294 (794)
T ss_pred cEEEEecCCccEEEecCcce---ehhhhhhcCCceEEEEeecCCCCeEEEeccCCcEE
Confidence 9999999 999999998776 44555556678899999888888888877776543
|
|
| >KOG1407 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.9e-29 Score=246.92 Aligned_cols=282 Identities=18% Similarity=0.261 Sum_probs=250.6
Q ss_pred EEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEE--EeccCCCCeEEEEEcC-CCCEEEEEeCCCeEEEEE
Q 003236 549 QLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKS--TLEEHTQWITDVRFSP-SLSRLATSSADRTVRVWD 625 (837)
Q Consensus 549 ~~l~~H~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~~~--~l~~h~~~I~~l~fsp-dg~~Latgs~Dg~I~IWD 625 (837)
+.+.+|..+|.+|+|+-+|..|++|+.|+++.||+++..+... ...+|.+.|-.++|+| ....|++++.|++|++||
T Consensus 14 r~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd 93 (313)
T KOG1407|consen 14 RELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWD 93 (313)
T ss_pred HHhhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEE
Confidence 5567999999999999999999999999999999998775553 3468999999999998 467899999999999999
Q ss_pred cCCCCceeEEeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeeEEecCCCeeEEEEecCCCEEEEEEcCCe
Q 003236 626 TENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENY 705 (837)
Q Consensus 626 l~~~~~~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~~~~i~sl~~sp~g~~llags~dg~ 705 (837)
+..++....+.. ...-.-+.|+|+|.+ ++.++.|..|.+.|.++.+..........+..++|+.++..++.....|.
T Consensus 94 ~r~~k~~~~i~~--~~eni~i~wsp~g~~-~~~~~kdD~it~id~r~~~~~~~~~~~~e~ne~~w~~~nd~Fflt~GlG~ 170 (313)
T KOG1407|consen 94 IRSGKCTARIET--KGENINITWSPDGEY-IAVGNKDDRITFIDARTYKIVNEEQFKFEVNEISWNNSNDLFFLTNGLGC 170 (313)
T ss_pred eccCcEEEEeec--cCcceEEEEcCCCCE-EEEecCcccEEEEEecccceeehhcccceeeeeeecCCCCEEEEecCCce
Confidence 998775443332 233346889999875 55788899999999999999988888889999999988888888888899
Q ss_pred EEEEECCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEE
Q 003236 706 ISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLL 784 (837)
Q Consensus 706 I~iwDl~s~~~~~~l~~h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fspdg~~L~ 784 (837)
|.|.....-+++..++.|.....||.|+|+|+|||+|+ |..+.+||+... .|++.+..+.-+|..+.|+.+|++|+
T Consensus 171 v~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~EL---iC~R~isRldwpVRTlSFS~dg~~lA 247 (313)
T KOG1407|consen 171 VEILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDEL---ICERCISRLDWPVRTLSFSHDGRMLA 247 (313)
T ss_pred EEEEeccccccccccccCCcceEEEEECCCCceEeeccccceeeccChhHh---hhheeeccccCceEEEEeccCcceee
Confidence 99999999999999999999999999999999999999 999999999776 78899999999999999999999999
Q ss_pred EEEcCCeEEEEECCCCcEEEeccCCCCeeEEEEeCCCCEEEEEECC---------CcEEEe
Q 003236 785 VIGCYETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHD---------KCVKIW 836 (837)
Q Consensus 785 sgs~dg~I~IwDl~s~~~~~l~~h~~~V~sla~spdg~~LaSgs~D---------G~I~IW 836 (837)
+++.|..|-|-++++|..+....++++...++|+|...+||.+++| |.|+||
T Consensus 248 SaSEDh~IDIA~vetGd~~~eI~~~~~t~tVAWHPk~~LLAyA~ddk~~d~~reag~vKiF 308 (313)
T KOG1407|consen 248 SASEDHFIDIAEVETGDRVWEIPCEGPTFTVAWHPKRPLLAYACDDKDGDSNREAGTVKIF 308 (313)
T ss_pred ccCccceEEeEecccCCeEEEeeccCCceeEEecCCCceeeEEecCCCCccccccceeEEe
Confidence 9999999999999999999888999999999999999999988865 567765
|
|
| >KOG0266 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.2e-28 Score=283.15 Aligned_cols=280 Identities=26% Similarity=0.424 Sum_probs=240.7
Q ss_pred cCCCccccCCCeEEcccCCCceEEeecCCCCCCCCccccccccCCCeeeeEEEEecCCCCCeEEEEEcCCCCEEEEEECC
Q 003236 497 SAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHD 576 (837)
Q Consensus 497 ~~~~~l~~~~~~v~~Gs~D~~v~~w~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~H~~~V~sl~fSpdg~~Lasgs~D 576 (837)
+....+.....++++++.|+.+++|....... .....+.+|...|.+++|+||++++++++.|
T Consensus 162 v~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~-----------------~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D 224 (456)
T KOG0266|consen 162 VTCVDFSPDGRALAAASSDGLIRIWKLEGIKS-----------------NLLRELSGHTRGVSDVAFSPDGSYLLSGSDD 224 (456)
T ss_pred eEEEEEcCCCCeEEEccCCCcEEEeecccccc-----------------hhhccccccccceeeeEECCCCcEEEEecCC
Confidence 33344555667899999999999996622210 2345558999999999999999999999999
Q ss_pred CcEEEEeC-CCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeEEeeccccceEEEEEcCCCCeE
Q 003236 577 KKAVLWCT-ESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDL 655 (837)
Q Consensus 577 g~I~VWd~-~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~sl~fspdg~~l 655 (837)
++|+|||+ ..+..++++.+|...|++++|+|+++++++|+.|++|+|||+++++ ++..+.+|...|.+++|++++. +
T Consensus 225 ~tiriwd~~~~~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~-~~~~l~~hs~~is~~~f~~d~~-~ 302 (456)
T KOG0266|consen 225 KTLRIWDLKDDGRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGE-CVRKLKGHSDGISGLAFSPDGN-L 302 (456)
T ss_pred ceEEEeeccCCCeEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCe-EEEeeeccCCceEEEEECCCCC-E
Confidence 99999999 5668999999999999999999999999999999999999999854 6999999999999999999987 5
Q ss_pred EEEEeCCCcEEEEECCCCe--eeeEEecC-C--CeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEcCCCCCE---
Q 003236 656 LCSCDNNSEIRYWSINNGS--CAGVFKCQ-S--GATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQV--- 727 (837)
Q Consensus 656 lasgs~Dg~I~vwDl~t~~--~i~~~~~~-~--~i~sl~~sp~g~~llags~dg~I~iwDl~s~~~~~~l~~h~~~V--- 727 (837)
+++++.|+.|++||+.++. ++..+... . .+.++.|+|++.++++++.|+.+++||+..+.++..+.+|...+
T Consensus 303 l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~~~~~~~~~~~ 382 (456)
T KOG0266|consen 303 LVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGTYTGHSNLVRCI 382 (456)
T ss_pred EEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCCcceeeecccCCcceeE
Confidence 5577889999999999999 45555432 2 47999999999999999999999999999999999999988753
Q ss_pred EEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecC-CCceEEEEEeCCCCEEEEEE--cCCeEEEEECC
Q 003236 728 HSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCT-GNKFHSCVFHPTFPSLLVIG--CYETLELWNMT 798 (837)
Q Consensus 728 ~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~-~~~I~sv~fspdg~~L~sgs--~dg~I~IwDl~ 798 (837)
.+...++.+.++++++ |+.|++||+.++ ..+..+..| ...+..+.+++...++++++ .|+.|++|...
T Consensus 383 ~~~~~~~~~~~i~sg~~d~~v~~~~~~s~---~~~~~l~~h~~~~~~~~~~~~~~~~~~s~s~~~d~~~~~w~~~ 454 (456)
T KOG0266|consen 383 FSPTLSTGGKLIYSGSEDGSVYVWDSSSG---GILQRLEGHSKAAVSDLSSHPTENLIASSSFEGDGLIRLWKYD 454 (456)
T ss_pred ecccccCCCCeEEEEeCCceEEEEeCCcc---chhhhhcCCCCCceeccccCCCcCeeeecCcCCCceEEEecCC
Confidence 3445577899999999 999999999986 667777888 88899999999999999998 67899999754
|
|
| >KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=7e-30 Score=252.53 Aligned_cols=279 Identities=21% Similarity=0.268 Sum_probs=247.2
Q ss_pred EecCCCCCeEEEEEcC---CCCEEEEEECCCcEEEEeCCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEc
Q 003236 550 LIPASTSKVESCHFSP---DGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDT 626 (837)
Q Consensus 550 ~l~~H~~~V~sl~fSp---dg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl 626 (837)
+..+|+.+|..++||| +|-+|++++.|+.-.+-+-+++.-+.++.+|.+.|+...++.+...-++++.|-+.+|||.
T Consensus 9 ~c~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tgdwigtfeghkgavw~~~l~~na~~aasaaadftakvw~a 88 (334)
T KOG0278|consen 9 TCHGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTGDWIGTFEGHKGAVWSATLNKNATRAASAAADFTAKVWDA 88 (334)
T ss_pred EEcCCCcceeEEeccCCCCCceEEEEeccCCCchhccCCCCCcEEeeeccCcceeeeecCchhhhhhhhcccchhhhhhh
Confidence 4469999999999986 8989999999999999999999999999999999999999999889999999999999999
Q ss_pred CCCCceeEEeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCee-eeEE-ecCCCeeEEEEecCCCEEEEEEcCC
Q 003236 627 ENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSC-AGVF-KCQSGATQMRFQPRLGRILAAAIEN 704 (837)
Q Consensus 627 ~~~~~~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~-i~~~-~~~~~i~sl~~sp~g~~llags~dg 704 (837)
-++.. +..+. |..-|.+++|+.|.++++ +|+.+..++|||++..+. ...+ .+.+.|..+.|....+.|++++.|+
T Consensus 89 ~tgde-lhsf~-hkhivk~~af~~ds~~ll-tgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~eD~~iLSSadd~ 165 (334)
T KOG0278|consen 89 VTGDE-LHSFE-HKHIVKAVAFSQDSNYLL-TGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCHEDKCILSSADDK 165 (334)
T ss_pred hhhhh-hhhhh-hhheeeeEEecccchhhh-ccchHHHhhhhhccCCCCCchhhcCCCCcceeEEEeccCceEEeeccCC
Confidence 98774 55544 888899999999976555 999999999999986542 2233 3567899999999999999999999
Q ss_pred eEEEEECCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEE
Q 003236 705 YISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLL 784 (837)
Q Consensus 705 ~I~iwDl~s~~~~~~l~~h~~~V~sl~~spdg~~LasgsDg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fspdg~~L~ 784 (837)
.|++||.++++.+..+. ...+|+++.++++|++|.++..+.|++||..+. ..+..++ ....|.+..++|+...++
T Consensus 166 tVRLWD~rTgt~v~sL~-~~s~VtSlEvs~dG~ilTia~gssV~Fwdaksf---~~lKs~k-~P~nV~SASL~P~k~~fV 240 (334)
T KOG0278|consen 166 TVRLWDHRTGTEVQSLE-FNSPVTSLEVSQDGRILTIAYGSSVKFWDAKSF---GLLKSYK-MPCNVESASLHPKKEFFV 240 (334)
T ss_pred ceEEEEeccCcEEEEEe-cCCCCcceeeccCCCEEEEecCceeEEeccccc---cceeecc-CccccccccccCCCceEE
Confidence 99999999999999887 678899999999999999988889999999876 4444443 356788999999999999
Q ss_pred EEEcCCeEEEEECCCCcEEE--eccCCCCeeEEEEeCCCCEEEEEECCCcEEEe
Q 003236 785 VIGCYETLELWNMTENKTLT--LSAHDKLVSSLAASTVNGMVASASHDKCVKIW 836 (837)
Q Consensus 785 sgs~dg~I~IwDl~s~~~~~--l~~h~~~V~sla~spdg~~LaSgs~DG~I~IW 836 (837)
+|+.|..++.||..+++.+. ..+|.++|.|+.|+|+|...++|+.||+|+||
T Consensus 241 aGged~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlW 294 (334)
T KOG0278|consen 241 AGGEDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPDGELYASGSEDGTIRLW 294 (334)
T ss_pred ecCcceEEEEEeccCCceeeecccCCCCceEEEEECCCCceeeccCCCceEEEE
Confidence 99999999999999999883 37999999999999999999999999999999
|
|
| >KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.4e-30 Score=260.56 Aligned_cols=280 Identities=23% Similarity=0.360 Sum_probs=246.1
Q ss_pred CCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEec--------cCCCCeEEEEEcCCCCEEEEEeCCCeEEEE
Q 003236 553 ASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLE--------EHTQWITDVRFSPSLSRLATSSADRTVRVW 624 (837)
Q Consensus 553 ~H~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~--------~h~~~I~~l~fspdg~~Latgs~Dg~I~IW 624 (837)
+..+.+.|..|||||.||++|+.||.|.|||..+|+..+.++ -+...|.|++|+.|...|++|+.||.|+||
T Consensus 211 g~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvW 290 (508)
T KOG0275|consen 211 GQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVW 290 (508)
T ss_pred ccccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEEE
Confidence 445568899999999999999999999999999988765543 478899999999999999999999999999
Q ss_pred EcCCCCceeEEeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeeEEecC-CCeeEEEEecCCCEEEEEEcC
Q 003236 625 DTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ-SGATQMRFQPRLGRILAAAIE 703 (837)
Q Consensus 625 Dl~~~~~~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~~-~~i~sl~~sp~g~~llags~d 703 (837)
.+.++.+..+.-..|+..|+|+.|+.|+..++ +++.|.++++.-+++|++++.++.+ +-|+...|.++|.++++++.|
T Consensus 291 ri~tG~ClRrFdrAHtkGvt~l~FSrD~SqiL-S~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft~dG~~iisaSsD 369 (508)
T KOG0275|consen 291 RIETGQCLRRFDRAHTKGVTCLSFSRDNSQIL-SASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATFTDDGHHIISASSD 369 (508)
T ss_pred EEecchHHHHhhhhhccCeeEEEEccCcchhh-cccccceEEEeccccchhHHHhcCccccccceEEcCCCCeEEEecCC
Confidence 99998864444458999999999999988666 8999999999999999999999865 458899999999999999999
Q ss_pred CeEEEEECCCCeEEEEEcC--CCCCEEEEEEcCCC-CEEEEEe-CCeEEEEEcCCCCCceeEEEeec---CCCceEEEEE
Q 003236 704 NYISILDVETQVCRLKLQG--HKNQVHSVCWNTSG-EYLASVS-DELVRVWSIGSGSKGECIHELSC---TGNKFHSCVF 776 (837)
Q Consensus 704 g~I~iwDl~s~~~~~~l~~--h~~~V~sl~~spdg-~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~---~~~~I~sv~f 776 (837)
|+|++|+.++.+|+.+++. ...+|.++..-|.+ ..+++|. .++|+|.++.. ..++.+.. .++.+.++++
T Consensus 370 gtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~qG----QvVrsfsSGkREgGdFi~~~l 445 (508)
T KOG0275|consen 370 GTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQG----QVVRSFSSGKREGGDFINAIL 445 (508)
T ss_pred ccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEeccc----eEEeeeccCCccCCceEEEEe
Confidence 9999999999999988875 45578888887754 5677777 88999998864 35555443 4577899999
Q ss_pred eCCCCEEEEEEcCCeEEEEECCCCcEE-EeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 003236 777 HPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 837 (837)
Q Consensus 777 spdg~~L~sgs~dg~I~IwDl~s~~~~-~l~~h~~~V~sla~spdg~~LaSgs~DG~I~IWd 837 (837)
+|.|.++++.+.|+.++.|.+.+|++. .+..|+..|..++-+|.-++||+-+.||.+++|+
T Consensus 446 SpkGewiYcigED~vlYCF~~~sG~LE~tl~VhEkdvIGl~HHPHqNllAsYsEDgllKLWk 507 (508)
T KOG0275|consen 446 SPKGEWIYCIGEDGVLYCFSVLSGKLERTLPVHEKDVIGLTHHPHQNLLASYSEDGLLKLWK 507 (508)
T ss_pred cCCCcEEEEEccCcEEEEEEeecCceeeeeecccccccccccCcccchhhhhcccchhhhcC
Confidence 999999999999999999999999987 6778999999999999999999999999999996
|
|
| >KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown] | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.5e-30 Score=264.30 Aligned_cols=267 Identities=19% Similarity=0.403 Sum_probs=229.4
Q ss_pred CCCeEEcccCCCceEEeecCCCCCCCCccccccccCCCeeeeEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEeC
Q 003236 505 MDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCT 584 (837)
Q Consensus 505 ~~~~v~~Gs~D~~v~~w~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~H~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~ 584 (837)
.+..+++|..|.+|++|+..+- .+.+.+.||++.|.|+.|. .+.|++|+.|.+|+|||+
T Consensus 206 DD~kiVSGlrDnTikiWD~n~~-------------------~c~~~L~GHtGSVLCLqyd--~rviisGSSDsTvrvWDv 264 (499)
T KOG0281|consen 206 DDEKIVSGLRDNTIKIWDKNSL-------------------ECLKILTGHTGSVLCLQYD--ERVIVSGSSDSTVRVWDV 264 (499)
T ss_pred cchhhhcccccCceEEeccccH-------------------HHHHhhhcCCCcEEeeecc--ceEEEecCCCceEEEEec
Confidence 3466789999999999955432 3467788999999999995 569999999999999999
Q ss_pred CCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCc--eeEEeeccccceEEEEEcCCCCeEEEEEeCC
Q 003236 585 ESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDY--SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN 662 (837)
Q Consensus 585 ~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~~~~--~~~~~~~h~~~V~sl~fspdg~~llasgs~D 662 (837)
.+++++.++-+|.+.|..+.|+. .+++++|.|.+|.|||+..... +.+.+.||...|+.+.|+ ..++++++.|
T Consensus 265 ~tge~l~tlihHceaVLhlrf~n--g~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd---~kyIVsASgD 339 (499)
T KOG0281|consen 265 NTGEPLNTLIHHCEAVLHLRFSN--GYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD---DKYIVSASGD 339 (499)
T ss_pred cCCchhhHHhhhcceeEEEEEeC--CEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeeccc---cceEEEecCC
Confidence 99999999999999999999974 5999999999999999987552 346788999999999998 3488899999
Q ss_pred CcEEEEECCCCeeeeEEec-CCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEcCCCCEEEE
Q 003236 663 SEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLAS 741 (837)
Q Consensus 663 g~I~vwDl~t~~~i~~~~~-~~~i~sl~~sp~g~~llags~dg~I~iwDl~s~~~~~~l~~h~~~V~sl~~spdg~~Las 741 (837)
.+|++|++.++++++++.. ..+|.|+.+ .++.+++|+.|++|++||++.|.++..+.+|+.-|.|+.|+ .+.|++
T Consensus 340 RTikvW~~st~efvRtl~gHkRGIAClQY--r~rlvVSGSSDntIRlwdi~~G~cLRvLeGHEeLvRciRFd--~krIVS 415 (499)
T KOG0281|consen 340 RTIKVWSTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFD--NKRIVS 415 (499)
T ss_pred ceEEEEeccceeeehhhhcccccceehhc--cCeEEEecCCCceEEEEeccccHHHHHHhchHHhhhheeec--Cceeee
Confidence 9999999999999999875 456777765 46789999999999999999999999999999999999994 677888
Q ss_pred Ee-CCeEEEEEcCCCCCc------eeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE
Q 003236 742 VS-DELVRVWSIGSGSKG------ECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL 803 (837)
Q Consensus 742 gs-Dg~I~IwDl~s~~~~------~~i~~~~~~~~~I~sv~fspdg~~L~sgs~dg~I~IwDl~s~~~~ 803 (837)
|. ||+|+|||+..+... -|+..+..|.+.|..+.|..- .|++++.|.+|.|||..++...
T Consensus 416 GaYDGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQFD~f--qIvsssHddtILiWdFl~~~~~ 482 (499)
T KOG0281|consen 416 GAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQFDEF--QIISSSHDDTILIWDFLNGPPS 482 (499)
T ss_pred ccccceEEEEecccccCCcccccchHHHhhhhccceeEEEeecce--EEEeccCCCeEEEEEcCCCCcc
Confidence 88 999999999875432 366677778889999998644 6899999999999998877544
|
|
| >KOG0288 consensus WD40 repeat protein TipD [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.1e-29 Score=266.63 Aligned_cols=283 Identities=20% Similarity=0.340 Sum_probs=247.7
Q ss_pred EEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCe--EEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEE
Q 003236 547 EFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFT--VKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVW 624 (837)
Q Consensus 547 ~~~~l~~H~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~--~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IW 624 (837)
....+..|.+.|..+.|-++...|++|+.|..|++|++...+ .+.++.+..+.|+++.|.++++++++++.|+.+++|
T Consensus 167 ~~~~ld~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~W 246 (459)
T KOG0288|consen 167 ALFVLDAHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKSELISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRLW 246 (459)
T ss_pred hhhhhhccccccceeEEccCcchhhhcchhhhhhhhhcccchhhhhhhhhccCCCcceeeecCCCceEEeecCCCceeee
Confidence 345678999999999999998899999999999999987666 677888888999999999999999999999999999
Q ss_pred EcCCCCceeEEeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeeEEecCCCeeEEEEecCCCEEEEEEcCC
Q 003236 625 DTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIEN 704 (837)
Q Consensus 625 Dl~~~~~~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~~~~i~sl~~sp~g~~llags~dg 704 (837)
++..... ..++.+|.+.|+++.|...... +++|+.|.+|++||+....|.+++-..+.+..|+.. ...++++..|+
T Consensus 247 nvd~~r~-~~TLsGHtdkVt~ak~~~~~~~-vVsgs~DRtiK~WDl~k~~C~kt~l~~S~cnDI~~~--~~~~~SgH~Dk 322 (459)
T KOG0288|consen 247 NVDSLRL-RHTLSGHTDKVTAAKFKLSHSR-VVSGSADRTIKLWDLQKAYCSKTVLPGSQCNDIVCS--ISDVISGHFDK 322 (459)
T ss_pred eccchhh-hhhhcccccceeeehhhccccc-eeeccccchhhhhhhhhhheeccccccccccceEec--ceeeeeccccc
Confidence 9998664 7899999999999999877554 779999999999999999999888777777777776 35678888999
Q ss_pred eEEEEECCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecC----CCceEEEEEeCC
Q 003236 705 YISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCT----GNKFHSCVFHPT 779 (837)
Q Consensus 705 ~I~iwDl~s~~~~~~l~~h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~----~~~I~sv~fspd 779 (837)
.|++||.++..++.....+. .|+++..++++..|.+++ |+++.++|+++. .....+... ....+.++|||+
T Consensus 323 kvRfwD~Rs~~~~~sv~~gg-~vtSl~ls~~g~~lLsssRDdtl~viDlRt~---eI~~~~sA~g~k~asDwtrvvfSpd 398 (459)
T KOG0288|consen 323 KVRFWDIRSADKTRSVPLGG-RVTSLDLSMDGLELLSSSRDDTLKVIDLRTK---EIRQTFSAEGFKCASDWTRVVFSPD 398 (459)
T ss_pred ceEEEeccCCceeeEeecCc-ceeeEeeccCCeEEeeecCCCceeeeecccc---cEEEEeeccccccccccceeEECCC
Confidence 99999999999999888665 999999999999999988 999999999987 444444432 345889999999
Q ss_pred CCEEEEEEcCCeEEEEECCCCcEE-Eecc-CC-CCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 003236 780 FPSLLVIGCYETLELWNMTENKTL-TLSA-HD-KLVSSLAASTVNGMVASASHDKCVKIWK 837 (837)
Q Consensus 780 g~~L~sgs~dg~I~IwDl~s~~~~-~l~~-h~-~~V~sla~spdg~~LaSgs~DG~I~IWd 837 (837)
+.|+++|+.||.|+||++.++++. .+.. +. ..|++++|+|.|..|++++.++.+.+|.
T Consensus 399 ~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Llsadk~~~v~lW~ 459 (459)
T KOG0288|consen 399 GSYVAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLLSADKQKAVTLWT 459 (459)
T ss_pred CceeeeccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCCchhhcccCCcceEecC
Confidence 999999999999999999999987 3332 22 3699999999999999999999999994
|
|
| >KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.8e-29 Score=257.24 Aligned_cols=245 Identities=22% Similarity=0.448 Sum_probs=223.4
Q ss_pred CCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeEEeeccccceEEEEEcCCCCeEEEEEeCCCcE
Q 003236 586 SFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEI 665 (837)
Q Consensus 586 t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I 665 (837)
..+..+.+.+|.++|.|+++.|.+.+|++|+.|++|+|||+.++.. ..++.+|...|..+++++...++| +++.|+.|
T Consensus 140 pwKl~rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~L-kltltGhi~~vr~vavS~rHpYlF-s~gedk~V 217 (460)
T KOG0285|consen 140 PWKLYRVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQL-KLTLTGHIETVRGVAVSKRHPYLF-SAGEDKQV 217 (460)
T ss_pred cceehhhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeE-EEeecchhheeeeeeecccCceEE-EecCCCee
Confidence 3566778899999999999999999999999999999999999764 788899999999999999877555 88999999
Q ss_pred EEEECCCCeeeeEEec-CCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEe-
Q 003236 666 RYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS- 743 (837)
Q Consensus 666 ~vwDl~t~~~i~~~~~-~~~i~sl~~sp~g~~llags~dg~I~iwDl~s~~~~~~l~~h~~~V~sl~~spdg~~Lasgs- 743 (837)
++||++..+.++.+.. -+.|.|+..+|.-..|++++.|..++|||+++...+..+.+|..+|..+.+.|....+++|+
T Consensus 218 KCwDLe~nkvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpqvit~S~ 297 (460)
T KOG0285|consen 218 KCWDLEYNKVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTDPQVITGSH 297 (460)
T ss_pred EEEechhhhhHHHhccccceeEEEeccccceeEEecCCcceEEEeeecccceEEEecCCCCcceeEEeecCCCceEEecC
Confidence 9999999999887764 57899999999999999999999999999999999999999999999999999888899999
Q ss_pred CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE-EeccCCCCeeEEEEeCCCC
Q 003236 744 DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNG 822 (837)
Q Consensus 744 Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fspdg~~L~sgs~dg~I~IwDl~s~~~~-~l~~h~~~V~sla~spdg~ 822 (837)
|++|++||++.+ +....+..|...+.+++.+|....+++++.| .|+-|++..+..+ .+.+|...|++++...|+
T Consensus 298 D~tvrlWDl~ag---kt~~tlt~hkksvral~lhP~e~~fASas~d-nik~w~~p~g~f~~nlsgh~~iintl~~nsD~- 372 (460)
T KOG0285|consen 298 DSTVRLWDLRAG---KTMITLTHHKKSVRALCLHPKENLFASASPD-NIKQWKLPEGEFLQNLSGHNAIINTLSVNSDG- 372 (460)
T ss_pred CceEEEeeeccC---ceeEeeecccceeeEEecCCchhhhhccCCc-cceeccCCccchhhccccccceeeeeeeccCc-
Confidence 999999999998 7788888899999999999998877777766 6999999999887 788999999999987665
Q ss_pred EEEEEECCCcEEEeC
Q 003236 823 MVASASHDKCVKIWK 837 (837)
Q Consensus 823 ~LaSgs~DG~I~IWd 837 (837)
++++|++.|.|.+||
T Consensus 373 v~~~G~dng~~~fwd 387 (460)
T KOG0285|consen 373 VLVSGGDNGSIMFWD 387 (460)
T ss_pred eEEEcCCceEEEEEe
Confidence 788999999999997
|
|
| >KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.7e-27 Score=240.95 Aligned_cols=283 Identities=22% Similarity=0.297 Sum_probs=239.0
Q ss_pred eEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeC--CCeEEE
Q 003236 546 TEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA--DRTVRV 623 (837)
Q Consensus 546 ~~~~~l~~H~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~--Dg~I~I 623 (837)
+..+.++.-.+.|+++.|+++|.+|++++.|.+|+|||..+++...++..++..|..++|......++.++. |.+|+.
T Consensus 5 ~~ak~f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIry 84 (311)
T KOG1446|consen 5 RPAKVFRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIRY 84 (311)
T ss_pred ccccccccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCCceEE
Confidence 334556667788999999999999999999999999999999999999999899999999888777877776 889999
Q ss_pred EEcCCCCceeEEeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeeEEecCCCeeEEEEecCCCEEEEEEcC
Q 003236 624 WDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIE 703 (837)
Q Consensus 624 WDl~~~~~~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~~~~i~sl~~sp~g~~llags~d 703 (837)
.++.++++ ++.+.||...|.+|+.+|-++ .+++++.|++|++||++..+|...+.. ..-..++|.|.|-.++++...
T Consensus 85 Lsl~dNky-lRYF~GH~~~V~sL~~sP~~d-~FlS~S~D~tvrLWDlR~~~cqg~l~~-~~~pi~AfDp~GLifA~~~~~ 161 (311)
T KOG1446|consen 85 LSLHDNKY-LRYFPGHKKRVNSLSVSPKDD-TFLSSSLDKTVRLWDLRVKKCQGLLNL-SGRPIAAFDPEGLIFALANGS 161 (311)
T ss_pred EEeecCce-EEEcCCCCceEEEEEecCCCC-eEEecccCCeEEeeEecCCCCceEEec-CCCcceeECCCCcEEEEecCC
Confidence 99999776 999999999999999999975 566999999999999998888877765 445568899998888888888
Q ss_pred CeEEEEECCCC--eEEEEEc---CCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCc---eEEE
Q 003236 704 NYISILDVETQ--VCRLKLQ---GHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNK---FHSC 774 (837)
Q Consensus 704 g~I~iwDl~s~--~~~~~l~---~h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~---I~sv 774 (837)
+.|++||++.- .+..++. +.....+.|.|+|||++|+.+. .+.+++.|.-+| ..+..+..+... -..+
T Consensus 162 ~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G---~~~~tfs~~~~~~~~~~~a 238 (311)
T KOG1446|consen 162 ELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDG---TVKSTFSGYPNAGNLPLSA 238 (311)
T ss_pred CeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCC---cEeeeEeeccCCCCcceeE
Confidence 89999999863 3333333 3467889999999999999888 789999999888 455555544332 3788
Q ss_pred EEeCCCCEEEEEEcCCeEEEEECCCCcEE-Eecc-CCCCeeEEEEeCCCCEEEEEECCCcEEEe
Q 003236 775 VFHPTFPSLLVIGCYETLELWNMTENKTL-TLSA-HDKLVSSLAASTVNGMVASASHDKCVKIW 836 (837)
Q Consensus 775 ~fspdg~~L~sgs~dg~I~IwDl~s~~~~-~l~~-h~~~V~sla~spdg~~LaSgs~DG~I~IW 836 (837)
+|+||+++|++|+.||+|.+|++++++.+ .+.+ +..++.++.|+|.-.++++++ ..+.+|
T Consensus 239 ~ftPds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~~~~~~~~~~fnP~~~mf~sa~--s~l~fw 300 (311)
T KOG1446|consen 239 TFTPDSKFVLSGSDDGTIHVWNLETGKKVAVLRGPNGGPVSCVRFNPRYAMFVSAS--SNLVFW 300 (311)
T ss_pred EECCCCcEEEEecCCCcEEEEEcCCCcEeeEecCCCCCCccccccCCceeeeeecC--ceEEEE
Confidence 99999999999999999999999999988 5555 789999999999877777664 467777
|
|
| >KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.96 E-value=4e-28 Score=273.35 Aligned_cols=282 Identities=21% Similarity=0.370 Sum_probs=249.7
Q ss_pred ecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCC
Q 003236 551 IPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPD 630 (837)
Q Consensus 551 l~~H~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~~~ 630 (837)
+...+..|..++|+|...+++++-..|.|.+||..-+.++..|..|.++|..|+|+|...++++|+.|-.|+||+..+.+
T Consensus 5 fEskSsRvKglsFHP~rPwILtslHsG~IQlWDYRM~tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rr 84 (1202)
T KOG0292|consen 5 FESKSSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRR 84 (1202)
T ss_pred hhcccccccceecCCCCCEEEEeecCceeeeehhhhhhHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEecccce
Confidence 44556779999999999999999999999999999999999999999999999999999999999999999999999865
Q ss_pred ceeEEeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeeEEecCC-CeeEEEEecCCCEEEEEEcCCeEEEE
Q 003236 631 YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQS-GATQMRFQPRLGRILAAAIENYISIL 709 (837)
Q Consensus 631 ~~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~~~-~i~sl~~sp~g~~llags~dg~I~iw 709 (837)
++.++.+|-..|..+.|++.-..++ ++++|-+|+||+..+++|+..+..+. -|.|..|+|....+++++-|-+|+||
T Consensus 85 -clftL~GHlDYVRt~~FHheyPWIl-SASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhptEDlIVSaSLDQTVRVW 162 (1202)
T KOG0292|consen 85 -CLFTLLGHLDYVRTVFFHHEYPWIL-SASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTEDLIVSASLDQTVRVW 162 (1202)
T ss_pred -ehhhhccccceeEEeeccCCCceEE-EccCCCeEEEEeccCCceEEEEecCceEEEeeccCCccceEEEecccceEEEE
Confidence 5889999999999999999977655 99999999999999999999998755 48999999999999999999999999
Q ss_pred ECCCC-----------------------------eEEEEEcCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCce
Q 003236 710 DVETQ-----------------------------VCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGE 759 (837)
Q Consensus 710 Dl~s~-----------------------------~~~~~l~~h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~ 759 (837)
|+..- .....+.+|...|+-++|+|.-.+|++|+ |..|++|.+...+. -
T Consensus 163 DisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmnetKa-W 241 (1202)
T KOG0292|consen 163 DISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKA-W 241 (1202)
T ss_pred eecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecCCcceeeEEEeccccc-e
Confidence 98521 12345678999999999999999999999 78999999876432 4
Q ss_pred eEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE-EeccCCCCeeEEEEeCCCCEEEEEECCCcEEEe
Q 003236 760 CIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIW 836 (837)
Q Consensus 760 ~i~~~~~~~~~I~sv~fspdg~~L~sgs~dg~I~IwDl~s~~~~-~l~~h~~~V~sla~spdg~~LaSgs~DG~I~IW 836 (837)
.+.+..+|.+.|.++.|+|....|++.+.|++|+|||+.....+ ++....+..+.++.+|..++++.|- |+-+.||
T Consensus 242 EvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kRt~v~tfrrendRFW~laahP~lNLfAAgH-DsGm~VF 318 (1202)
T KOG0292|consen 242 EVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKRTSVQTFRRENDRFWILAAHPELNLFAAGH-DSGMIVF 318 (1202)
T ss_pred eehhhhcccCCcceEEecCccceeEecCCCccEEEEecccccceeeeeccCCeEEEEEecCCcceeeeec-CCceEEE
Confidence 56677899999999999999999999999999999999998887 5656677899999999999888774 5445554
|
|
| >KOG0645 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.7e-27 Score=237.30 Aligned_cols=270 Identities=21% Similarity=0.379 Sum_probs=221.2
Q ss_pred CCeEEcccCCCceEEeecCCCCCCCCccccccccCCCeeeeEEEEe-cCCCCCeEEEEEcCCCCEEEEEECCCcEEEEeC
Q 003236 506 DRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLI-PASTSKVESCHFSPDGKLLATGGHDKKAVLWCT 584 (837)
Q Consensus 506 ~~~v~~Gs~D~~v~~w~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l-~~H~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~ 584 (837)
..++++++.|+.|++|.... +..+.+..++ .+|+..|.+|+|+|.|++||+|+.|.++.||.-
T Consensus 27 g~ilAscg~Dk~vriw~~~~----------------~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t~~Iw~k 90 (312)
T KOG0645|consen 27 GVILASCGTDKAVRIWSTSS----------------GDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDATVVIWKK 90 (312)
T ss_pred ceEEEeecCCceEEEEecCC----------------CCcEEEEEeccccchheeeeeeecCCCcEEEEeeccceEEEeec
Confidence 45899999999999996543 1224445455 379999999999999999999999999999975
Q ss_pred C--CCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCC--ceeEEeeccccceEEEEEcCCCCeEEEEEe
Q 003236 585 E--SFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPD--YSLRTFTGHSTTVMSLDFHPSKEDLLCSCD 660 (837)
Q Consensus 585 ~--t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~~~--~~~~~~~~h~~~V~sl~fspdg~~llasgs 660 (837)
. ..+++.++++|...|.|++|+++|.+||||+.|+.|-||.+.... .+...+..|...|..+.|+|... +|++++
T Consensus 91 ~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHPt~d-lL~S~S 169 (312)
T KOG0645|consen 91 EDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPTED-LLFSCS 169 (312)
T ss_pred CCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcCCcc-eeEEec
Confidence 4 467889999999999999999999999999999999999998433 35678899999999999999854 888999
Q ss_pred CCCcEEEEECC---CCeeeeEEecC-CCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEcCCC
Q 003236 661 NNSEIRYWSIN---NGSCAGVFKCQ-SGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSG 736 (837)
Q Consensus 661 ~Dg~I~vwDl~---t~~~i~~~~~~-~~i~sl~~sp~g~~llags~dg~I~iwDl~s~~~~~~l~~h~~~V~sl~~spdg 736 (837)
.|.+|++|+-. .-.++.++..+ ..|.+++|++.|..+++++.|++|+||-..+.-. ..|...++.+.|. .
T Consensus 170 YDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~~~~----~~~sr~~Y~v~W~--~ 243 (312)
T KOG0645|consen 170 YDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLYTDLS----GMHSRALYDVPWD--N 243 (312)
T ss_pred cCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEecCCcceEeeeeccCcc----hhcccceEeeeec--c
Confidence 99999999876 23567777654 4799999999999999999999999998663211 1378899999998 4
Q ss_pred CEEEEEe-CCeEEEEEcCCCCC---ce-eEEEeecCCCceEEEEEeCC-CCEEEEEEcCCeEEEEECC
Q 003236 737 EYLASVS-DELVRVWSIGSGSK---GE-CIHELSCTGNKFHSCVFHPT-FPSLLVIGCYETLELWNMT 798 (837)
Q Consensus 737 ~~Lasgs-Dg~I~IwDl~s~~~---~~-~i~~~~~~~~~I~sv~fspd-g~~L~sgs~dg~I~IwDl~ 798 (837)
..|++++ |+.|++|....... .. .......|+..|+++.|.|. ...|++++.||.|++|.+.
T Consensus 244 ~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVNsV~w~p~~~~~L~s~~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 244 GVIASGGGDDAIRLFKESDSPDEPSWNLLAKKEGAHEVDVNSVQWNPKVSNRLASGGDDGIVNFWELE 311 (312)
T ss_pred cceEeccCCCEEEEEEecCCCCCchHHHHHhhhcccccccceEEEcCCCCCceeecCCCceEEEEEec
Confidence 4566666 99999998764311 11 12234568889999999995 6789999999999999864
|
|
| >KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.2e-27 Score=242.74 Aligned_cols=268 Identities=20% Similarity=0.344 Sum_probs=232.0
Q ss_pred CCCeEEcccCCCceEEeecCCCCCCCCccccccccCCCeeeeEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEeC
Q 003236 505 MDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCT 584 (837)
Q Consensus 505 ~~~~v~~Gs~D~~v~~w~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~H~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~ 584 (837)
.+.++++|+.|..|.+|...++. +.+.++++|.+.|..+.|.+|+..|++++.|++|+.||+
T Consensus 58 ~gs~~aSgG~Dr~I~LWnv~gdc------------------eN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~ 119 (338)
T KOG0265|consen 58 DGSCFASGGSDRAIVLWNVYGDC------------------ENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWDA 119 (338)
T ss_pred CCCeEeecCCcceEEEEeccccc------------------cceeeeccccceeEeeeeccCCCEEEEecCCceEEEEec
Confidence 44789999999999999765543 225567799999999999999999999999999999999
Q ss_pred CCCeEEEEeccCCCCeEEEEEcCCC-CEEEEEeCCCeEEEEEcCCCCceeEEeeccccceEEEEEcCCCCeEEEEEeCCC
Q 003236 585 ESFTVKSTLEEHTQWITDVRFSPSL-SRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNS 663 (837)
Q Consensus 585 ~t~~~~~~l~~h~~~I~~l~fspdg-~~Latgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg 663 (837)
++++.++.+++|.+.|+.+.-+.-| .++.+++.|++++|||++... .++++. ....++++.|...+..++ +|+-|+
T Consensus 120 ~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~-~~~t~~-~kyqltAv~f~d~s~qv~-sggIdn 196 (338)
T KOG0265|consen 120 ETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKE-AIKTFE-NKYQLTAVGFKDTSDQVI-SGGIDN 196 (338)
T ss_pred ccceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccc-hhhccc-cceeEEEEEeccccccee-eccccC
Confidence 9999999999999999999844433 467788999999999999754 355443 456799999998877665 899999
Q ss_pred cEEEEECCCCeeeeEEec-CCCeeEEEEecCCCEEEEEEcCCeEEEEECCC----CeEEEEEcCCCC----CEEEEEEcC
Q 003236 664 EIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAIENYISILDVET----QVCRLKLQGHKN----QVHSVCWNT 734 (837)
Q Consensus 664 ~I~vwDl~t~~~i~~~~~-~~~i~sl~~sp~g~~llags~dg~I~iwDl~s----~~~~~~l~~h~~----~V~sl~~sp 734 (837)
.|++||++......++.. ...|+.+..+++|.++++-+.|+++++||++- ..++..+.+|.. ....++|+|
T Consensus 197 ~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~cswsp 276 (338)
T KOG0265|consen 197 DIKVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWSP 276 (338)
T ss_pred ceeeeccccCcceEEeecccCceeeEEeccCCCccccccccceEEEEEecccCCCCceEEEeecchhhhhhhcceeeccC
Confidence 999999999999998886 45799999999999999999999999999985 356777777533 445789999
Q ss_pred CCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEE
Q 003236 735 SGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWN 796 (837)
Q Consensus 735 dg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fspdg~~L~sgs~dg~I~IwD 796 (837)
++.++.+++ |..+++||.... .++..+.+|.+.|.++.|+|...+|.+++.|.+|++=.
T Consensus 277 ~~~~i~ags~dr~vyvwd~~~r---~~lyklpGh~gsvn~~~Fhp~e~iils~~sdk~i~lge 336 (338)
T KOG0265|consen 277 NGTKITAGSADRFVYVWDTTSR---RILYKLPGHYGSVNEVDFHPTEPIILSCSSDKTIYLGE 336 (338)
T ss_pred CCCccccccccceEEEeecccc---cEEEEcCCcceeEEEeeecCCCcEEEEeccCceeEeec
Confidence 999999999 999999999876 78999999999999999999999999999999998744
|
|
| >KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.8e-27 Score=247.91 Aligned_cols=278 Identities=21% Similarity=0.326 Sum_probs=235.7
Q ss_pred CCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEeccCCCCeEEEEEcCCC---CEEEEEeCCCeEEEEEcCCC
Q 003236 553 ASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSL---SRLATSSADRTVRVWDTENP 629 (837)
Q Consensus 553 ~H~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~I~~l~fspdg---~~Latgs~Dg~I~IWDl~~~ 629 (837)
-|.+.|.+|... ++++++|++||.++|||. .|+.+..+.+|.++|.+++|.-.. ..|++++.|.++++|.++.+
T Consensus 103 ~hdDWVSsv~~~--~~~IltgsYDg~~riWd~-~Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~ 179 (423)
T KOG0313|consen 103 LHDDWVSSVKGA--SKWILTGSYDGTSRIWDL-KGKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVG 179 (423)
T ss_pred cchhhhhhhccc--CceEEEeecCCeeEEEec-CCceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCc
Confidence 478888888887 679999999999999995 578999999999999998886533 35999999999999999876
Q ss_pred Ccee---EEeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCC-------------------------eeeeEEe-
Q 003236 630 DYSL---RTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNG-------------------------SCAGVFK- 680 (837)
Q Consensus 630 ~~~~---~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~-------------------------~~i~~~~- 680 (837)
...+ ....||...|-++...+++. .+++|+.|..|.+|+..+. .++..+.
T Consensus 180 ~~~~~~~~~~~GHk~~V~sVsv~~sgt-r~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~G 258 (423)
T KOG0313|consen 180 ENKVKALKVCRGHKRSVDSVSVDSSGT-RFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEG 258 (423)
T ss_pred hhhhhHHhHhcccccceeEEEecCCCC-eEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecc
Confidence 5433 34459999999999999976 6779999999999993211 1111222
Q ss_pred cCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCce
Q 003236 681 CQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGE 759 (837)
Q Consensus 681 ~~~~i~sl~~sp~g~~llags~dg~I~iwDl~s~~~~~~l~~h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~ 759 (837)
+...|.++.|++ ...+++++.|.+|+.||+.++.++.++. ....++|+..+|...+|++|+ |..|++||.+++....
T Consensus 259 Ht~~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg~~~~~~~-~~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs~ 336 (423)
T KOG0313|consen 259 HTEPVSSVVWSD-ATVIYSVSWDHTIKVWDLETGGLKSTLT-TNKSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDGSV 336 (423)
T ss_pred cccceeeEEEcC-CCceEeecccceEEEEEeecccceeeee-cCcceeEeecccccceeeecCCCCceeecCCCCCCCce
Confidence 245688899988 6889999999999999999999888887 457899999999999999999 9999999999987667
Q ss_pred eEEEeecCCCceEEEEEeCCCCE-EEEEEcCCeEEEEECCCCc-EE-EeccCCCCeeEEEEeCCCCEEEEEECCCcEEEe
Q 003236 760 CIHELSCTGNKFHSCVFHPTFPS-LLVIGCYETLELWNMTENK-TL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIW 836 (837)
Q Consensus 760 ~i~~~~~~~~~I~sv~fspdg~~-L~sgs~dg~I~IwDl~s~~-~~-~l~~h~~~V~sla~spdg~~LaSgs~DG~I~IW 836 (837)
....+.+|.+.|.++.|+|...+ |++++.|+++++||+++.+ .+ .+.+|...|.++.|. ++.+|++|+.|.+|+|+
T Consensus 337 v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~DKvl~vdW~-~~~~IvSGGaD~~l~i~ 415 (423)
T KOG0313|consen 337 VSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHNDKVLSVDWN-EGGLIVSGGADNKLRIF 415 (423)
T ss_pred eEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeeccCCceEEEEecc-CCceEEeccCcceEEEe
Confidence 78889999999999999998765 6678889999999998876 44 888999999999996 57799999999999997
Q ss_pred C
Q 003236 837 K 837 (837)
Q Consensus 837 d 837 (837)
+
T Consensus 416 ~ 416 (423)
T KOG0313|consen 416 K 416 (423)
T ss_pred c
Confidence 4
|
|
| >KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.4e-27 Score=245.92 Aligned_cols=270 Identities=20% Similarity=0.344 Sum_probs=231.9
Q ss_pred ccCCCeEEcccCCCceEEeecCCCCCCCCccccccccCCCeeeeEEEEecCCCCCeEEEEEcCCCC---EEEEEECCCcE
Q 003236 503 TDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGK---LLATGGHDKKA 579 (837)
Q Consensus 503 ~~~~~~v~~Gs~D~~v~~w~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~H~~~V~sl~fSpdg~---~Lasgs~Dg~I 579 (837)
.....++.+|+.|+.+++|.... .....+.+|.++|.+++|.-... .|++++.|.++
T Consensus 112 ~~~~~~IltgsYDg~~riWd~~G--------------------k~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl 171 (423)
T KOG0313|consen 112 KGASKWILTGSYDGTSRIWDLKG--------------------KSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTL 171 (423)
T ss_pred cccCceEEEeecCCeeEEEecCC--------------------ceEEEEecCCcceeeeEEEecCCccceEEEecCCceE
Confidence 44478999999999999995533 24677889999999888865333 59999999999
Q ss_pred EEEeCCCCeEE----EEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCC------------------------Cc
Q 003236 580 VLWCTESFTVK----STLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENP------------------------DY 631 (837)
Q Consensus 580 ~VWd~~t~~~~----~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~~------------------------~~ 631 (837)
++|..+.+... ....+|...|-+|...+++..+++||.|.+|.||+.... +.
T Consensus 172 ~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~ 251 (423)
T KOG0313|consen 172 RLWKWNVGENKVKALKVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRT 251 (423)
T ss_pred EEEEecCchhhhhHHhHhcccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccC
Confidence 99988766543 344599999999999999999999999999999993311 13
Q ss_pred eeEEeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeeEEecCCCeeEEEEecCCCEEEEEEcCCeEEEEEC
Q 003236 632 SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDV 711 (837)
Q Consensus 632 ~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~~~~i~sl~~sp~g~~llags~dg~I~iwDl 711 (837)
++..+.+|..+|.++.|++ ...+++++.|.+|+.||+.++.++..+..+..+.|+.++|....|++|+.|..|++||.
T Consensus 252 P~vtl~GHt~~Vs~V~w~d--~~v~yS~SwDHTIk~WDletg~~~~~~~~~ksl~~i~~~~~~~Ll~~gssdr~irl~DP 329 (423)
T KOG0313|consen 252 PLVTLEGHTEPVSSVVWSD--ATVIYSVSWDHTIKVWDLETGGLKSTLTTNKSLNCISYSPLSKLLASGSSDRHIRLWDP 329 (423)
T ss_pred ceEEecccccceeeEEEcC--CCceEeecccceEEEEEeecccceeeeecCcceeEeecccccceeeecCCCCceeecCC
Confidence 4667889999999999998 34788999999999999999999999999999999999999999999999999999999
Q ss_pred CCC---eEEEEEcCCCCCEEEEEEcCCCCE-EEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEE
Q 003236 712 ETQ---VCRLKLQGHKNQVHSVCWNTSGEY-LASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVI 786 (837)
Q Consensus 712 ~s~---~~~~~l~~h~~~V~sl~~spdg~~-Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fspdg~~L~sg 786 (837)
+++ .....+.+|.+.|.++.|+|...+ |++++ |+++++||+++.. ..+..+..|...|.++.|... ..|++|
T Consensus 330 R~~~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k--~plydI~~h~DKvl~vdW~~~-~~IvSG 406 (423)
T KOG0313|consen 330 RTGDGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTK--APLYDIAGHNDKVLSVDWNEG-GLIVSG 406 (423)
T ss_pred CCCCCceeEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccCC--CcceeeccCCceEEEEeccCC-ceEEec
Confidence 975 456788899999999999997765 55666 9999999999873 488899999999999999855 469999
Q ss_pred EcCCeEEEEEC
Q 003236 787 GCYETLELWNM 797 (837)
Q Consensus 787 s~dg~I~IwDl 797 (837)
+.|.+|+|+.-
T Consensus 407 GaD~~l~i~~~ 417 (423)
T KOG0313|consen 407 GADNKLRIFKG 417 (423)
T ss_pred cCcceEEEecc
Confidence 99999999864
|
|
| >KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.3e-27 Score=237.39 Aligned_cols=276 Identities=21% Similarity=0.364 Sum_probs=229.8
Q ss_pred EEEEEcC--CCCEEEEEE-------CCCcEEEEeCCCCeEEEEec--cCCCCeEEEEEcCC-CCEEEEEeCCCeEEEEEc
Q 003236 559 ESCHFSP--DGKLLATGG-------HDKKAVLWCTESFTVKSTLE--EHTQWITDVRFSPS-LSRLATSSADRTVRVWDT 626 (837)
Q Consensus 559 ~sl~fSp--dg~~Lasgs-------~Dg~I~VWd~~t~~~~~~l~--~h~~~I~~l~fspd-g~~Latgs~Dg~I~IWDl 626 (837)
.++.||| +++ ||++. ..|++.|-++...+-+..+. .-.+.+.+++|+++ .+.+++++.||+++|||+
T Consensus 12 ysvqfSPf~~nr-LavAt~q~yGl~G~G~L~ile~~~~~gi~e~~s~d~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~ 90 (311)
T KOG0277|consen 12 YSVQFSPFVENR-LAVATAQHYGLAGNGRLFILEVTDPKGIQECQSYDTEDGLFDVAWSENHENQVIAASGDGSLRLFDL 90 (311)
T ss_pred ceeEecccccch-hheeehhhcccccCceEEEEecCCCCCeEEEEeeecccceeEeeecCCCcceEEEEecCceEEEecc
Confidence 5788998 443 33332 36889999986443333322 35678999999995 678899999999999999
Q ss_pred CCCCceeEEeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeeEEec-CCCeeEEEEecC-CCEEEEEEcCC
Q 003236 627 ENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPR-LGRILAAAIEN 704 (837)
Q Consensus 627 ~~~~~~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~-~~~i~sl~~sp~-g~~llags~dg 704 (837)
.....++..++.|...|.++.|++..+..+++++.|++|++|+......+.++.. ...|....|+|. .+.+++++.|+
T Consensus 91 ~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~ 170 (311)
T KOG0277|consen 91 TMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCIYQAAFSPHIPNLFASASGDG 170 (311)
T ss_pred CCCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcceEeecCCccEEEEEecCCCCCCeEEEccCCc
Confidence 8888899999999999999999998888888999999999999999999999886 456889999995 56677888999
Q ss_pred eEEEEECCCCeEEEEEcCCCCCEEEEEEcC-CCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCC-C
Q 003236 705 YISILDVETQVCRLKLQGHKNQVHSVCWNT-SGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTF-P 781 (837)
Q Consensus 705 ~I~iwDl~s~~~~~~l~~h~~~V~sl~~sp-dg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fspdg-~ 781 (837)
.+++||++..-....+..|...|.|+.|+. +...|++++ |+.|++||+++-. .++.++.+|+-.|..+.|+|.. .
T Consensus 171 ~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r--~pl~eL~gh~~AVRkvk~Sph~~~ 248 (311)
T KOG0277|consen 171 TLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLR--TPLFELNGHGLAVRKVKFSPHHAS 248 (311)
T ss_pred eEEEEEecCCCceeEEEeccceeEeecccccCCcEEEecCCCceEEEEehhhcc--ccceeecCCceEEEEEecCcchhh
Confidence 999999997654555888999999999997 456777777 9999999999875 5688889999999999999976 4
Q ss_pred EEEEEEcCCeEEEEECCCCcEE--EeccCCCCeeEEEEeC-CCCEEEEEECCCcEEEeC
Q 003236 782 SLLVIGCYETLELWNMTENKTL--TLSAHDKLVSSLAAST-VNGMVASASHDKCVKIWK 837 (837)
Q Consensus 782 ~L~sgs~dg~I~IwDl~s~~~~--~l~~h~~~V~sla~sp-dg~~LaSgs~DG~I~IWd 837 (837)
.|++++.|-+++|||.....-. +...|..-|..+.|++ +..++|+++.|+.++||+
T Consensus 249 lLaSasYDmT~riw~~~~~ds~~e~~~~HtEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~ 307 (311)
T KOG0277|consen 249 LLASASYDMTVRIWDPERQDSAIETVDHHTEFVCGLDWSLFDPGQVASTGWDELLYVWN 307 (311)
T ss_pred HhhhccccceEEecccccchhhhhhhhccceEEeccccccccCceeeecccccceeeec
Confidence 5777888889999998755433 6668899999999997 557999999999999996
|
|
| >PLN00181 protein SPA1-RELATED; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.7e-26 Score=282.02 Aligned_cols=286 Identities=14% Similarity=0.224 Sum_probs=225.8
Q ss_pred cCCCccccCCCeEEcccCCCceEEeecCCCCCCCCccccccccCCCeeeeEEEEecCCCCCeEEEEEcC-CCCEEEEEEC
Q 003236 497 SAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSP-DGKLLATGGH 575 (837)
Q Consensus 497 ~~~~~l~~~~~~v~~Gs~D~~v~~w~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~H~~~V~sl~fSp-dg~~Lasgs~ 575 (837)
+....+...+.++++|+.|+.|++|........ . .... ..+..+. +...|.+++|++ ++.+||+++.
T Consensus 486 V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~----~------~~~~-~~~~~~~-~~~~v~~l~~~~~~~~~las~~~ 553 (793)
T PLN00181 486 VCAIGFDRDGEFFATAGVNKKIKIFECESIIKD----G------RDIH-YPVVELA-SRSKLSGICWNSYIKSQVASSNF 553 (793)
T ss_pred EEEEEECCCCCEEEEEeCCCEEEEEECCccccc----c------cccc-cceEEec-ccCceeeEEeccCCCCEEEEEeC
Confidence 334445566789999999999999965331100 0 0000 0112222 346799999987 5789999999
Q ss_pred CCcEEEEeCCCCeEEEEeccCCCCeEEEEEcC-CCCEEEEEeCCCeEEEEEcCCCCceeEEeeccccceEEEEEcCCCCe
Q 003236 576 DKKAVLWCTESFTVKSTLEEHTQWITDVRFSP-SLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKED 654 (837)
Q Consensus 576 Dg~I~VWd~~t~~~~~~l~~h~~~I~~l~fsp-dg~~Latgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~sl~fspdg~~ 654 (837)
||+|+|||+.+++.+..+.+|.+.|++++|+| ++.+|++|+.|++|++||+.++.. +..+..+ ..|.++.|++....
T Consensus 554 Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~-~~~~~~~-~~v~~v~~~~~~g~ 631 (793)
T PLN00181 554 EGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVS-IGTIKTK-ANICCVQFPSESGR 631 (793)
T ss_pred CCeEEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcE-EEEEecC-CCeEEEEEeCCCCC
Confidence 99999999999999999999999999999997 789999999999999999987653 5555544 67999999766566
Q ss_pred EEEEEeCCCcEEEEECCCCe-eeeEEe-cCCCeeEEEEecCCCEEEEEEcCCeEEEEECCC------CeEEEEEcCCCCC
Q 003236 655 LLCSCDNNSEIRYWSINNGS-CAGVFK-CQSGATQMRFQPRLGRILAAAIENYISILDVET------QVCRLKLQGHKNQ 726 (837)
Q Consensus 655 llasgs~Dg~I~vwDl~t~~-~i~~~~-~~~~i~sl~~sp~g~~llags~dg~I~iwDl~s------~~~~~~l~~h~~~ 726 (837)
++++|+.||.|++||+++.+ .+..+. +...|.++.|. ++..+++++.|+.|++||++. ..++..+.+|...
T Consensus 632 ~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~ 710 (793)
T PLN00181 632 SLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHTNV 710 (793)
T ss_pred EEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEe-CCCEEEEEECCCEEEEEeCCCCccccCCcceEEEcCCCCC
Confidence 88899999999999998765 344443 45679999997 678999999999999999974 3567889999999
Q ss_pred EEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCcee--------E--EEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEE
Q 003236 727 VHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGEC--------I--HELSCTGNKFHSCVFHPTFPSLLVIGCYETLELW 795 (837)
Q Consensus 727 V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~--------i--~~~~~~~~~I~sv~fspdg~~L~sgs~dg~I~Iw 795 (837)
+.+++|++++.+|++|+ |+.|+||+......... + .....+...|.+++|++++..|++++.+|.|+||
T Consensus 711 i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~~~~lva~~~dG~I~i~ 790 (793)
T PLN00181 711 KNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVCWRGQSSTLVAANSTGNIKIL 790 (793)
T ss_pred eeEEEEcCCCCEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCcEEEEEEEcCCCCeEEEecCCCcEEEE
Confidence 99999999999999999 99999999865421100 0 0112344569999999999999999999999999
Q ss_pred EC
Q 003236 796 NM 797 (837)
Q Consensus 796 Dl 797 (837)
++
T Consensus 791 ~~ 792 (793)
T PLN00181 791 EM 792 (793)
T ss_pred ec
Confidence 96
|
|
| >KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.3e-28 Score=254.75 Aligned_cols=280 Identities=16% Similarity=0.310 Sum_probs=235.9
Q ss_pred EEEEecCCCCCeEEEEEcCCC-CEEEEEECCCcEEEEeCCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEE
Q 003236 547 EFQLIPASTSKVESCHFSPDG-KLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWD 625 (837)
Q Consensus 547 ~~~~l~~H~~~V~sl~fSpdg-~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWD 625 (837)
.+..+.+|.+.|.|++=+|.. ..+|+|+.||.|+|||+....+..++..|.+.|..|++.. ..+++++.|++|+.|.
T Consensus 58 Fv~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~--~~~~tvgdDKtvK~wk 135 (433)
T KOG0268|consen 58 FVGSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQ--TSFFTVGDDKTVKQWK 135 (433)
T ss_pred chhhccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhheeecccCceeeEEecc--cceEEecCCcceeeee
Confidence 356779999999999999976 6899999999999999999999999999999999999986 6799999999999999
Q ss_pred cCCCCceeEEeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeeEEecC-CCeeEEEEecCCCEEEEEE-cC
Q 003236 626 TENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ-SGATQMRFQPRLGRILAAA-IE 703 (837)
Q Consensus 626 l~~~~~~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~~-~~i~sl~~sp~g~~llags-~d 703 (837)
++.+ +++++.+ ...+..|+-+.. ...+++|+. .|.|||.....++..+... ..|.++.|+|....|++++ .|
T Consensus 136 ~~~~--p~~tilg-~s~~~gIdh~~~-~~~FaTcGe--~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~~sD 209 (433)
T KOG0268|consen 136 IDGP--PLHTILG-KSVYLGIDHHRK-NSVFATCGE--QIDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILASCASD 209 (433)
T ss_pred ccCC--cceeeec-cccccccccccc-cccccccCc--eeeecccccCCccceeecCCCceeEEecCCCcchheeeeccC
Confidence 9863 4566654 345667776654 347778864 5999999988888888764 4589999999876665554 89
Q ss_pred CeEEEEECCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCE
Q 003236 704 NYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPS 782 (837)
Q Consensus 704 g~I~iwDl~s~~~~~~l~~h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fspdg~~ 782 (837)
+.|.+||++...++..+. -...-+.|+|+|.+..+++++ |..++.||++... ..+.....|.+.|.++.|+|.|..
T Consensus 210 rsIvLyD~R~~~Pl~KVi-~~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~--~p~~v~~dhvsAV~dVdfsptG~E 286 (433)
T KOG0268|consen 210 RSIVLYDLRQASPLKKVI-LTMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLS--RPLNVHKDHVSAVMDVDFSPTGQE 286 (433)
T ss_pred CceEEEecccCCccceee-eeccccceecCccccceeeccccccceehhhhhhc--ccchhhcccceeEEEeccCCCcch
Confidence 999999999998877665 344567899999777777777 8899999999764 677788899999999999999999
Q ss_pred EEEEEcCCeEEEEECCCCcEEEec--cCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 003236 783 LLVIGCYETLELWNMTENKTLTLS--AHDKLVSSLAASTVNGMVASASHDKCVKIWK 837 (837)
Q Consensus 783 L~sgs~dg~I~IwDl~s~~~~~l~--~h~~~V~sla~spdg~~LaSgs~DG~I~IWd 837 (837)
|++|+.|.+|+||.+..+....+. .--..|.|+.||.|.++|++||+|+.|++|+
T Consensus 287 fvsgsyDksIRIf~~~~~~SRdiYhtkRMq~V~~Vk~S~Dskyi~SGSdd~nvRlWk 343 (433)
T KOG0268|consen 287 FVSGSYDKSIRIFPVNHGHSRDIYHTKRMQHVFCVKYSMDSKYIISGSDDGNVRLWK 343 (433)
T ss_pred hccccccceEEEeecCCCcchhhhhHhhhheeeEEEEeccccEEEecCCCcceeeee
Confidence 999999999999999887655322 2234699999999999999999999999996
|
|
| >KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown] | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.6e-27 Score=254.15 Aligned_cols=289 Identities=17% Similarity=0.258 Sum_probs=233.6
Q ss_pred eEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeE----EEEe-ccCCCCeEEEEEcCCCCEEEEEeCCCe
Q 003236 546 TEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTV----KSTL-EEHTQWITDVRFSPSLSRLATSSADRT 620 (837)
Q Consensus 546 ~~~~~l~~H~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~----~~~l-~~h~~~I~~l~fspdg~~Latgs~Dg~ 620 (837)
.....+.+|+..|+++++.|.|-.|++|+.|.+|++||...... .+.+ ......|.++.|++.+..|++.+....
T Consensus 158 shEi~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~aq 237 (641)
T KOG0772|consen 158 SHEIQLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGSAQ 237 (641)
T ss_pred cceEeccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecCcc
Confidence 34566889999999999999999999999999999999864322 1222 234457999999999999999999999
Q ss_pred EEEEEcCCCCce-----------eEEeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCe-eeeEEec------C
Q 003236 621 VRVWDTENPDYS-----------LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS-CAGVFKC------Q 682 (837)
Q Consensus 621 I~IWDl~~~~~~-----------~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~-~i~~~~~------~ 682 (837)
++|+|-+..... +...++|...++|.+|+|+....|++|+.||++++||+...+ ...++.. .
T Consensus 238 akl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~R 317 (641)
T KOG0772|consen 238 AKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKR 317 (641)
T ss_pred eeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCcc
Confidence 999997643210 123468999999999999999999999999999999997644 3444443 2
Q ss_pred CCeeEEEEecCCCEEEEEEcCCeEEEEECCCCe--E-EEEEcCCCC--CEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCC
Q 003236 683 SGATQMRFQPRLGRILAAAIENYISILDVETQV--C-RLKLQGHKN--QVHSVCWNTSGEYLASVS-DELVRVWSIGSGS 756 (837)
Q Consensus 683 ~~i~sl~~sp~g~~llags~dg~I~iwDl~s~~--~-~~~l~~h~~--~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~ 756 (837)
-.++.++|+++++.|++|+.||.|.+||..+.. + ...-..|.. .|+||.|++||++|++-+ |+++++||++..+
T Consensus 318 v~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~k 397 (641)
T KOG0772|consen 318 VPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQFK 397 (641)
T ss_pred cCceeeecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCceeeeeccccc
Confidence 247899999999999999999999999986542 2 223345776 899999999999999988 9999999999875
Q ss_pred CceeEEEeec--CCCceEEEEEeCCCCEEEEEEc------CCeEEEEECCCCcEE-EeccCCCCeeEEEEeCCCCEEEEE
Q 003236 757 KGECIHELSC--TGNKFHSCVFHPTFPSLLVIGC------YETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASA 827 (837)
Q Consensus 757 ~~~~i~~~~~--~~~~I~sv~fspdg~~L~sgs~------dg~I~IwDl~s~~~~-~l~~h~~~V~sla~spdg~~LaSg 827 (837)
+++....+ ....-+.|+|+|+.+.|++|.+ .+.+++||..+...+ ++.-....|..+.|+|.-+.|+.|
T Consensus 398 --kpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~~aSvv~~~WhpkLNQi~~g 475 (641)
T KOG0772|consen 398 --KPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDISTASVVRCLWHPKLNQIFAG 475 (641)
T ss_pred --cchhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeEEEecCCCceEEEEeecchhhheeee
Confidence 44444433 3445688999999999999865 358999999888877 555567889999999999999999
Q ss_pred ECCCcEEEe
Q 003236 828 SHDKCVKIW 836 (837)
Q Consensus 828 s~DG~I~IW 836 (837)
+.||+++||
T Consensus 476 sgdG~~~vy 484 (641)
T KOG0772|consen 476 SGDGTAHVY 484 (641)
T ss_pred cCCCceEEE
Confidence 999999986
|
|
| >KOG0283 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.5e-27 Score=271.12 Aligned_cols=247 Identities=21% Similarity=0.316 Sum_probs=206.7
Q ss_pred eEEEEec-CCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCC--------------------------------------
Q 003236 546 TEFQLIP-ASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES-------------------------------------- 586 (837)
Q Consensus 546 ~~~~~l~-~H~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t-------------------------------------- 586 (837)
...+.+. +|.+.|+++.||+||+|||+||.|+.|+||.+..
T Consensus 257 ~~~Qe~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~ 336 (712)
T KOG0283|consen 257 TVVQEISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRT 336 (712)
T ss_pred EEeeccccccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccc
Confidence 3445566 9999999999999999999999999999996543
Q ss_pred ----------------------CeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeEEeeccccceE
Q 003236 587 ----------------------FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVM 644 (837)
Q Consensus 587 ----------------------~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~ 644 (837)
.+++..+.+|.+.|.+|.|+.+ .+|+++|.|++|++|++.... ++..|. |...|+
T Consensus 337 s~~~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn-~fLLSSSMDKTVRLWh~~~~~-CL~~F~-HndfVT 413 (712)
T KOG0283|consen 337 SSSRKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKN-NFLLSSSMDKTVRLWHPGRKE-CLKVFS-HNDFVT 413 (712)
T ss_pred cccccccCCccccCCCccccccccchhhhhccchhheecccccC-CeeEeccccccEEeecCCCcc-eeeEEe-cCCeeE
Confidence 0112234589999999999965 689999999999999999644 566665 999999
Q ss_pred EEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeeEEecCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEcC--
Q 003236 645 SLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQG-- 722 (837)
Q Consensus 645 sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~~~~i~sl~~sp~g~~llags~dg~I~iwDl~s~~~~~~l~~-- 722 (837)
|++|+|.++++|++|+-||.|+||+|...+.+.......-|++++|.|+|+..++|+.+|.+++|+....+....+..
T Consensus 414 cVaFnPvDDryFiSGSLD~KvRiWsI~d~~Vv~W~Dl~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~ 493 (712)
T KOG0283|consen 414 CVAFNPVDDRYFISGSLDGKVRLWSISDKKVVDWNDLRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRL 493 (712)
T ss_pred EEEecccCCCcEeecccccceEEeecCcCeeEeehhhhhhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEee
Confidence 999999999999999999999999999999998888889999999999999999999999999999998766554321
Q ss_pred C------CCCEEEEEEcCCCC--EEEEEeCCeEEEEEcCCCCCceeEEEeecCC--CceEEEEEeCCCCEEEEEEcCCeE
Q 003236 723 H------KNQVHSVCWNTSGE--YLASVSDELVRVWSIGSGSKGECIHELSCTG--NKFHSCVFHPTFPSLLVIGCYETL 792 (837)
Q Consensus 723 h------~~~V~sl~~spdg~--~LasgsDg~I~IwDl~s~~~~~~i~~~~~~~--~~I~sv~fspdg~~L~sgs~dg~I 792 (837)
| ...|+.+.|.|... +|++..|..|+|||.+.. ..+..+++.. ..-....|+.||++|++++.|..|
T Consensus 494 ~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~---~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~seDs~V 570 (712)
T KOG0283|consen 494 HNKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDK---DLVHKFKGFRNTSSQISASFSSDGKHIVSASEDSWV 570 (712)
T ss_pred ccCccccCceeeeeEecCCCCCeEEEecCCCceEEEeccch---hhhhhhcccccCCcceeeeEccCCCEEEEeecCceE
Confidence 1 22799999987543 666666999999999776 4555655432 344677899999999999999999
Q ss_pred EEEECC
Q 003236 793 ELWNMT 798 (837)
Q Consensus 793 ~IwDl~ 798 (837)
+||++.
T Consensus 571 YiW~~~ 576 (712)
T KOG0283|consen 571 YIWKND 576 (712)
T ss_pred EEEeCC
Confidence 999973
|
|
| >PTZ00420 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.4e-26 Score=263.15 Aligned_cols=249 Identities=16% Similarity=0.209 Sum_probs=204.0
Q ss_pred EECCCcEEEEeCCCCeEEEEeccCCCCeEEEEEcCC-CCEEEEEeCCCeEEEEEcCCCCc-------eeEEeeccccceE
Q 003236 573 GGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPS-LSRLATSSADRTVRVWDTENPDY-------SLRTFTGHSTTVM 644 (837)
Q Consensus 573 gs~Dg~I~VWd~~t~~~~~~l~~h~~~I~~l~fspd-g~~Latgs~Dg~I~IWDl~~~~~-------~~~~~~~h~~~V~ 644 (837)
|+.++.|++|+......+..+.+|.+.|.+++|+|+ +.+|++|+.|++|+|||+.+... ++..+.+|...|.
T Consensus 50 GG~~gvI~L~~~~r~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~ 129 (568)
T PTZ00420 50 GGLIGAIRLENQMRKPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKIS 129 (568)
T ss_pred CCceeEEEeeecCCCceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEE
Confidence 567889999998888888899999999999999996 78999999999999999976431 2446788999999
Q ss_pred EEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeeEEecCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEcCCC
Q 003236 645 SLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHK 724 (837)
Q Consensus 645 sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~~~~i~sl~~sp~g~~llags~dg~I~iwDl~s~~~~~~l~~h~ 724 (837)
+++|+|++..++++++.|++|++||++++..+..+.+...|.++.|+++|..|++++.|+.|+|||++++..+..+.+|.
T Consensus 130 sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~tl~gH~ 209 (568)
T PTZ00420 130 IIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQINMPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIASSFHIHD 209 (568)
T ss_pred EEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEecCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEEEEeccc
Confidence 99999998888889999999999999999888777777889999999999999999999999999999999999999998
Q ss_pred CCEEEE-----EEcCCCCEEEEEe-CC----eEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEE
Q 003236 725 NQVHSV-----CWNTSGEYLASVS-DE----LVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLEL 794 (837)
Q Consensus 725 ~~V~sl-----~~spdg~~Lasgs-Dg----~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fspdg~~L~sgs~dg~I~I 794 (837)
+.+.+. .|++++.+|++++ |+ .|+|||++..........+..+.+.+......+++.++++|+.|+.|++
T Consensus 210 g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~lsGkGD~tIr~ 289 (568)
T PTZ00420 210 GGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIYLIGKGDGNCRY 289 (568)
T ss_pred CCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCCEEEEEECCCeEEE
Confidence 765432 3458888888876 54 7999999964322222233333344444445566888999999999999
Q ss_pred EECCCCcEEEe--ccCCCCeeEEEEeCCC
Q 003236 795 WNMTENKTLTL--SAHDKLVSSLAASTVN 821 (837)
Q Consensus 795 wDl~s~~~~~l--~~h~~~V~sla~spdg 821 (837)
|++..+....+ ..+..++.+++|.|+.
T Consensus 290 ~e~~~~~~~~l~~~~s~~p~~g~~f~Pkr 318 (568)
T PTZ00420 290 YQHSLGSIRKVNEYKSCSPFRSFGFLPKQ 318 (568)
T ss_pred EEccCCcEEeecccccCCCccceEEcccc
Confidence 99988765433 3466788999999965
|
|
| >KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.9e-27 Score=241.39 Aligned_cols=287 Identities=25% Similarity=0.387 Sum_probs=239.8
Q ss_pred EEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCC------------------CeEEEEeccCCCCeEEEEEcCC
Q 003236 547 EFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES------------------FTVKSTLEEHTQWITDVRFSPS 608 (837)
Q Consensus 547 ~~~~l~~H~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t------------------~~~~~~l~~h~~~I~~l~fspd 608 (837)
+-..+..|..++.+.+|++||.++|+|+.|..|+|.|++. .-.++++..|.+.|+++.|+|.
T Consensus 104 Et~ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPr 183 (430)
T KOG0640|consen 104 ETKYLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPR 183 (430)
T ss_pred ceEEEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecch
Confidence 3455778999999999999999999999999999999761 1356788899999999999999
Q ss_pred CCEEEEEeCCCeEEEEEcCCCCce-eEEeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeeEEe----cCC
Q 003236 609 LSRLATSSADRTVRVWDTENPDYS-LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK----CQS 683 (837)
Q Consensus 609 g~~Latgs~Dg~I~IWDl~~~~~~-~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~----~~~ 683 (837)
...|++++.|++|++||+...... .........+|.+|.|+|.|++++ .|....++++||+++..|..... +.+
T Consensus 184 e~ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefll-vgTdHp~~rlYdv~T~QcfvsanPd~qht~ 262 (430)
T KOG0640|consen 184 ETILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLL-VGTDHPTLRLYDVNTYQCFVSANPDDQHTG 262 (430)
T ss_pred hheEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEE-EecCCCceeEEeccceeEeeecCccccccc
Confidence 999999999999999999864321 112223457899999999988555 77778899999999988876544 356
Q ss_pred CeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEcC-CC-CCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCcee
Q 003236 684 GATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQG-HK-NQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGEC 760 (837)
Q Consensus 684 ~i~sl~~sp~g~~llags~dg~I~iwDl~s~~~~~~l~~-h~-~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~ 760 (837)
.|+++.+++.++..++++.||.|++||--+++|+.++.. |. ..|++..|..+++||++.+ |..|++|.+.++ .+
T Consensus 263 ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~---R~ 339 (430)
T KOG0640|consen 263 AITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTG---RM 339 (430)
T ss_pred ceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcceeeeeeecCC---ce
Confidence 799999999999999999999999999999999988864 54 4799999999999999988 999999999998 67
Q ss_pred EEEeecCCC-----ceEEEEEeCCCCEEEEEEc-CCeEEEEECCCCcEE--EeccCCCCeeEEEEeCCCCEEEEEECCCc
Q 003236 761 IHELSCTGN-----KFHSCVFHPTFPSLLVIGC-YETLELWNMTENKTL--TLSAHDKLVSSLAASTVNGMVASASHDKC 832 (837)
Q Consensus 761 i~~~~~~~~-----~I~sv~fspdg~~L~sgs~-dg~I~IwDl~s~~~~--~l~~h~~~V~sla~spdg~~LaSgs~DG~ 832 (837)
+.++.+.+. --+...|.....+++.-.. .+.++-||.++...+ .-.+|.+.+..+.-+|.+.-+++|++|-.
T Consensus 340 l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~slgHn~a~R~i~HSP~~p~FmTcsdD~r 419 (430)
T KOG0640|consen 340 LKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALLSLGHNGAVRWIVHSPVEPAFMTCSDDFR 419 (430)
T ss_pred EEEEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccchhhhhhcccCCCCCceEEEeCCCCCceeeecccce
Confidence 777665421 1244567777777777665 348999999988766 34599999999999999999999999999
Q ss_pred EEEeC
Q 003236 833 VKIWK 837 (837)
Q Consensus 833 I~IWd 837 (837)
+++|.
T Consensus 420 aRFWy 424 (430)
T KOG0640|consen 420 ARFWY 424 (430)
T ss_pred eeeee
Confidence 99993
|
|
| >KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.95 E-value=6.2e-27 Score=251.10 Aligned_cols=276 Identities=19% Similarity=0.275 Sum_probs=241.7
Q ss_pred CCCeEEEEEcCCCCE-EEEEECCCcEEEEeCCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCcee
Q 003236 555 TSKVESCHFSPDGKL-LATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSL 633 (837)
Q Consensus 555 ~~~V~sl~fSpdg~~-Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~~~~~~ 633 (837)
.+.|++++|+|...+ +|+++ .-.|.||+..+.....++......|++++|..||++|+.|...|.|+|||+.+ +..+
T Consensus 26 ~~~vssl~fsp~~P~d~aVt~-S~rvqly~~~~~~~~k~~srFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~-r~iL 103 (487)
T KOG0310|consen 26 HNSVSSLCFSPKHPYDFAVTS-SVRVQLYSSVTRSVRKTFSRFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKS-RVIL 103 (487)
T ss_pred cCcceeEecCCCCCCceEEec-ccEEEEEecchhhhhhhHHhhccceeEEEeecCCeEEEccCCcCcEEEecccc-HHHH
Confidence 356999999996554 44443 46799999998888888888899999999999999999999999999999554 5568
Q ss_pred EEeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeeEEe-cCCCeeEEEEecCCC-EEEEEEcCCeEEEEEC
Q 003236 634 RTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK-CQSGATQMRFQPRLG-RILAAAIENYISILDV 711 (837)
Q Consensus 634 ~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~-~~~~i~sl~~sp~g~-~llags~dg~I~iwDl 711 (837)
+.+.+|..+|..+.|+|.++.++++|++|+.+++||+.+......+. +...|.|.+|+|... .+++|+.||.|++||+
T Consensus 104 R~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~Dt 183 (487)
T KOG0310|consen 104 RQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDT 183 (487)
T ss_pred HHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEe
Confidence 89999999999999999999999999999999999999988644444 356799999999765 6778999999999999
Q ss_pred CCC-eEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCC
Q 003236 712 ETQ-VCRLKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYE 790 (837)
Q Consensus 712 ~s~-~~~~~l~~h~~~V~sl~~spdg~~LasgsDg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fspdg~~L~sgs~dg 790 (837)
+.. ..+.++. |..+|..+.+-|.|..|++++...|+|||+.++. ..+.....|...|+|+++..++..|++++-|+
T Consensus 184 R~~~~~v~eln-hg~pVe~vl~lpsgs~iasAgGn~vkVWDl~~G~--qll~~~~~H~KtVTcL~l~s~~~rLlS~sLD~ 260 (487)
T KOG0310|consen 184 RSLTSRVVELN-HGCPVESVLALPSGSLIASAGGNSVKVWDLTTGG--QLLTSMFNHNKTVTCLRLASDSTRLLSGSLDR 260 (487)
T ss_pred ccCCceeEEec-CCCceeeEEEcCCCCEEEEcCCCeEEEEEecCCc--eehhhhhcccceEEEEEeecCCceEeeccccc
Confidence 987 6666665 9999999999999999999999999999999774 45555566999999999999999999999999
Q ss_pred eEEEEECCCCcEEEeccCCCCeeEEEEeCCCCEEEEEECCCcEEE
Q 003236 791 TLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKI 835 (837)
Q Consensus 791 ~I~IwDl~s~~~~~l~~h~~~V~sla~spdg~~LaSgs~DG~I~I 835 (837)
.|++||+.+.+.+.-..-.++|.+|+.+|++..++.|..||.+.+
T Consensus 261 ~VKVfd~t~~Kvv~s~~~~~pvLsiavs~dd~t~viGmsnGlv~~ 305 (487)
T KOG0310|consen 261 HVKVFDTTNYKVVHSWKYPGPVLSIAVSPDDQTVVIGMSNGLVSI 305 (487)
T ss_pred ceEEEEccceEEEEeeecccceeeEEecCCCceEEEecccceeee
Confidence 999999999998877778899999999999999999999998754
|
|
| >KOG0282 consensus mRNA splicing factor [Function unknown] | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.7e-28 Score=260.98 Aligned_cols=248 Identities=18% Similarity=0.296 Sum_probs=219.9
Q ss_pred CeEEEEeccCCCCeEEEEEcC-CCCEEEEEeCCCeEEEEEcCCCCceeEEeeccccceEEEEEcCCCCeEEEEEeCCCcE
Q 003236 587 FTVKSTLEEHTQWITDVRFSP-SLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEI 665 (837)
Q Consensus 587 ~~~~~~l~~h~~~I~~l~fsp-dg~~Latgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I 665 (837)
.+.+.++.+|+..|+++.|.| .+.+|++++.|+.|+||++.....+++++.+|..+|.+++|+.+|..++ +++.|+.|
T Consensus 204 kk~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fL-S~sfD~~l 282 (503)
T KOG0282|consen 204 KKLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFL-SASFDRFL 282 (503)
T ss_pred HhheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCCeee-eeecceee
Confidence 356678899999999999999 7999999999999999999987778999999999999999999988666 89999999
Q ss_pred EEEECCCCeeeeEEecCCCeeEEEEecCC-CEEEEEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEe-
Q 003236 666 RYWSINNGSCAGVFKCQSGATQMRFQPRL-GRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS- 743 (837)
Q Consensus 666 ~vwDl~t~~~i~~~~~~~~i~sl~~sp~g-~~llags~dg~I~iwDl~s~~~~~~l~~h~~~V~sl~~spdg~~Lasgs- 743 (837)
++||+++|+++..+.....++|+.|+|++ +.+++|+.|+.|+.||+++++.+.++..|-+.|..+.|-++|+.+++++
T Consensus 283 KlwDtETG~~~~~f~~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~rFissSD 362 (503)
T KOG0282|consen 283 KLWDTETGQVLSRFHLDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDEGRRFISSSD 362 (503)
T ss_pred eeeccccceEEEEEecCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEccCCceEeeecc
Confidence 99999999999999999999999999998 7889999999999999999999999999999999999999999999999
Q ss_pred CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE----EeccCC--CCeeEEEE
Q 003236 744 DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL----TLSAHD--KLVSSLAA 817 (837)
Q Consensus 744 Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fspdg~~L~sgs~dg~I~IwDl~s~~~~----~l~~h~--~~V~sla~ 817 (837)
|+.++||+.+.+...+.+. ..+.....+|..+|.++++++-+.|+.|.+|.+...-.+ .+.+|. +.-..|.|
T Consensus 363 dks~riWe~~~~v~ik~i~--~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~f 440 (503)
T KOG0282|consen 363 DKSVRIWENRIPVPIKNIA--DPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDF 440 (503)
T ss_pred CccEEEEEcCCCccchhhc--chhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceeccCceeeEEE
Confidence 8899999998874323222 233455678999999999999999999999987544332 566664 45677899
Q ss_pred eCCCCEEEEEECCCcEEEeC
Q 003236 818 STVNGMVASASHDKCVKIWK 837 (837)
Q Consensus 818 spdg~~LaSgs~DG~I~IWd 837 (837)
||||.+|++|+.||.|.+||
T Consensus 441 SpDG~~l~SGdsdG~v~~wd 460 (503)
T KOG0282|consen 441 SPDGRTLCSGDSDGKVNFWD 460 (503)
T ss_pred cCCCCeEEeecCCccEEEee
Confidence 99999999999999999997
|
|
| >KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.95 E-value=7.6e-27 Score=229.46 Aligned_cols=263 Identities=22% Similarity=0.292 Sum_probs=229.4
Q ss_pred cCCCeEEcccCCCceEEeecCCCCCCCCccccccccCCCeeeeEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEe
Q 003236 504 DMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWC 583 (837)
Q Consensus 504 ~~~~~v~~Gs~D~~v~~w~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~H~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd 583 (837)
...++..+.+.|.+|++|....+ ..++++.+|...|..++.+.|...|++|+.|+.|.+||
T Consensus 27 ~dGnY~ltcGsdrtvrLWNp~rg-------------------~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwD 87 (307)
T KOG0316|consen 27 VDGNYCLTCGSDRTVRLWNPLRG-------------------ALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWD 87 (307)
T ss_pred cCCCEEEEcCCCceEEeeccccc-------------------ceeeeecCCCceeeeccccccccccccCCCCceEEEEE
Confidence 34478888888999999955332 35788899999999999999999999999999999999
Q ss_pred CCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCC-ceeEEeeccccceEEEEEcCCCCeEEEEEeCC
Q 003236 584 TESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPD-YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN 662 (837)
Q Consensus 584 ~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~~~-~~~~~~~~h~~~V~sl~fspdg~~llasgs~D 662 (837)
+++++.++.+.+|.+.|+.++|+.+...+++|+.|.++++||.+... .++.++......|.++... +..+++|+.|
T Consensus 88 V~TGkv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~---~heIvaGS~D 164 (307)
T KOG0316|consen 88 VNTGKVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVA---EHEIVAGSVD 164 (307)
T ss_pred cccCeeeeecccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEec---ccEEEeeccC
Confidence 99999999999999999999999999999999999999999998654 4678888888999999998 4577899999
Q ss_pred CcEEEEECCCCeeeeEEecCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEcCCCCCEE--EEEEcCCCCEEE
Q 003236 663 SEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVH--SVCWNTSGEYLA 740 (837)
Q Consensus 663 g~I~vwDl~t~~~i~~~~~~~~i~sl~~sp~g~~llags~dg~I~iwDl~s~~~~~~l~~h~~~V~--sl~~spdg~~La 740 (837)
|+++.||++.|.....+- ..+|+|+.|+++++..++++.++.|++.|-++++.+..+++|.+.-. .++++.....++
T Consensus 165 GtvRtydiR~G~l~sDy~-g~pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYkGhkn~eykldc~l~qsdthV~ 243 (307)
T KOG0316|consen 165 GTVRTYDIRKGTLSSDYF-GHPITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYKGHKNMEYKLDCCLNQSDTHVF 243 (307)
T ss_pred CcEEEEEeecceeehhhc-CCcceeEEecCCCCEEEEeeccceeeecccchhHHHHHhcccccceeeeeeeecccceeEE
Confidence 999999999988765543 47899999999999999999999999999999999999999987543 456777788999
Q ss_pred EEe-CCeEEEEEcCCCCCceeEEEeecCCCc-eEEEEEeCCCCEEEEEEcCCeE
Q 003236 741 SVS-DELVRVWSIGSGSKGECIHELSCTGNK-FHSCVFHPTFPSLLVIGCYETL 792 (837)
Q Consensus 741 sgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~-I~sv~fspdg~~L~sgs~dg~I 792 (837)
+|+ ||.|++||+... ..+..+..+... +.++.++|.-..|+++...+.+
T Consensus 244 sgSEDG~Vy~wdLvd~---~~~sk~~~~~~v~v~dl~~hp~~~~f~~A~~~~~~ 294 (307)
T KOG0316|consen 244 SGSEDGKVYFWDLVDE---TQISKLSVVSTVIVTDLSCHPTMDDFITATGHGDL 294 (307)
T ss_pred eccCCceEEEEEeccc---eeeeeeccCCceeEEeeecccCccceeEecCCcee
Confidence 999 999999999887 677777777777 8999999998888877765533
|
|
| >KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.2e-27 Score=236.70 Aligned_cols=276 Identities=19% Similarity=0.220 Sum_probs=239.2
Q ss_pred cccCCCeEEcccCCCceEEeecCCCCCCCCccccccccCCCeeeeEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEE
Q 003236 502 LTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVL 581 (837)
Q Consensus 502 l~~~~~~v~~Gs~D~~v~~w~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~H~~~V~sl~fSpdg~~Lasgs~Dg~I~V 581 (837)
+.+..-|+.++|.|+.--+- .|.+-.-+.+|.+|.+.|++.+++.+....|+++.|-+.+|
T Consensus 25 itp~g~flisa~kd~~pmlr-------------------~g~tgdwigtfeghkgavw~~~l~~na~~aasaaadftakv 85 (334)
T KOG0278|consen 25 ITPDGYFLISASKDGKPMLR-------------------NGDTGDWIGTFEGHKGAVWSATLNKNATRAASAAADFTAKV 85 (334)
T ss_pred CCCCceEEEEeccCCCchhc-------------------cCCCCCcEEeeeccCcceeeeecCchhhhhhhhcccchhhh
Confidence 34556678888776543221 11122237889999999999999999989999999999999
Q ss_pred EeCCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeEEeeccccceEEEEEcCCCCeEEEEEeC
Q 003236 582 WCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDN 661 (837)
Q Consensus 582 Wd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~sl~fspdg~~llasgs~ 661 (837)
||.-++..+..+. |..-|..++|+.|.++|+||+.++.++|||++..+.+...+.+|.+.|..+.|......+| ++..
T Consensus 86 w~a~tgdelhsf~-hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~eD~~iL-SSad 163 (334)
T KOG0278|consen 86 WDAVTGDELHSFE-HKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCHEDKCIL-SSAD 163 (334)
T ss_pred hhhhhhhhhhhhh-hhheeeeEEecccchhhhccchHHHhhhhhccCCCCCchhhcCCCCcceeEEEeccCceEE-eecc
Confidence 9999999999985 8899999999999999999999999999999999988999999999999999998766565 6688
Q ss_pred CCcEEEEECCCCeeeeEEecCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEcCCCCEEEE
Q 003236 662 NSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLAS 741 (837)
Q Consensus 662 Dg~I~vwDl~t~~~i~~~~~~~~i~sl~~sp~g~~llags~dg~I~iwDl~s~~~~~~l~~h~~~V~sl~~spdg~~Las 741 (837)
|++|++||.++++.+..+..+..|+++.++++|. +++.+..+.|.+||..+-..++.++ ....|.+..++|+..++++
T Consensus 164 d~tVRLWD~rTgt~v~sL~~~s~VtSlEvs~dG~-ilTia~gssV~Fwdaksf~~lKs~k-~P~nV~SASL~P~k~~fVa 241 (334)
T KOG0278|consen 164 DKTVRLWDHRTGTEVQSLEFNSPVTSLEVSQDGR-ILTIAYGSSVKFWDAKSFGLLKSYK-MPCNVESASLHPKKEFFVA 241 (334)
T ss_pred CCceEEEEeccCcEEEEEecCCCCcceeeccCCC-EEEEecCceeEEeccccccceeecc-CccccccccccCCCceEEe
Confidence 9999999999999999999999999999999966 5566677899999999988888776 5678999999999988888
Q ss_pred Ee-CCeEEEEEcCCCCCceeEEE-eecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE
Q 003236 742 VS-DELVRVWSIGSGSKGECIHE-LSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL 803 (837)
Q Consensus 742 gs-Dg~I~IwDl~s~~~~~~i~~-~~~~~~~I~sv~fspdg~~L~sgs~dg~I~IwDl~s~~~~ 803 (837)
|+ |..++.||..++ +.+.. .++|.++|.++.|+|+|...++|+.||+|+||-+..++..
T Consensus 242 Gged~~~~kfDy~Tg---eEi~~~nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQt~~~~~~ 302 (334)
T KOG0278|consen 242 GGEDFKVYKFDYNTG---EEIGSYNKGHFGPVHCVRFSPDGELYASGSEDGTIRLWQTTPGKTY 302 (334)
T ss_pred cCcceEEEEEeccCC---ceeeecccCCCCceEEEEECCCCceeeccCCCceEEEEEecCCCch
Confidence 88 999999999998 44544 4889999999999999999999999999999998766543
|
|
| >KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.7e-26 Score=265.65 Aligned_cols=270 Identities=24% Similarity=0.430 Sum_probs=241.3
Q ss_pred CCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEE-eccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCc
Q 003236 553 ASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKST-LEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDY 631 (837)
Q Consensus 553 ~H~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~-l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~~~~ 631 (837)
.|...|.|..|. ..++++++.|.+|++||..++..+.. +.+|.+.|++++|..-+.+|++|+.|.+++|||+.++.
T Consensus 206 ~~~~~~~~~q~~--~~~~~~~s~~~tl~~~~~~~~~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~- 282 (537)
T KOG0274|consen 206 TDDHVVLCLQLH--DGFFKSGSDDSTLHLWDLNNGYLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGE- 282 (537)
T ss_pred cCcchhhhheee--cCeEEecCCCceeEEeecccceEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCc-
Confidence 467778899998 45899999999999999999999988 99999999999998778899999999999999988866
Q ss_pred eeEEeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeeEEe-cCCCeeEEEEecCCCEEEEEEcCCeEEEEE
Q 003236 632 SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK-CQSGATQMRFQPRLGRILAAAIENYISILD 710 (837)
Q Consensus 632 ~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~-~~~~i~sl~~sp~g~~llags~dg~I~iwD 710 (837)
+...+.+|.+.|.++...+ .++++|+.|.+|++|++.++.++..+. +...|.++.+. +..+++|+.|+.|.+||
T Consensus 283 C~~~l~gh~stv~~~~~~~---~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~--~~~lvsgs~d~~v~VW~ 357 (537)
T KOG0274|consen 283 CTHSLQGHTSSVRCLTIDP---FLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLD--EPLLVSGSYDGTVKVWD 357 (537)
T ss_pred EEEEecCCCceEEEEEccC---ceEeeccCCceEEEEeccCcceEEEeccccccEEEEEec--CCEEEEEecCceEEEEE
Confidence 5899999999999999874 477789999999999999999999999 78889999988 78999999999999999
Q ss_pred CCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcC
Q 003236 711 VETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCY 789 (837)
Q Consensus 711 l~s~~~~~~l~~h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fspdg~~L~sgs~d 789 (837)
+.+++++..+.+|...|.++.+... .++++|+ |+.|++||+++.. +|+..+..|...+..+.+ .+.+|++++.|
T Consensus 358 ~~~~~cl~sl~gH~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~--~c~~tl~~h~~~v~~l~~--~~~~Lvs~~aD 432 (537)
T KOG0274|consen 358 PRTGKCLKSLSGHTGRVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKR--KCIHTLQGHTSLVSSLLL--RDNFLVSSSAD 432 (537)
T ss_pred hhhceeeeeecCCcceEEEEEecCc-ceEEeeeeccceEeecCCchh--hhhhhhcCCccccccccc--ccceeEecccc
Confidence 9999999999999999999988765 8888998 9999999998864 688899988888865554 45689999999
Q ss_pred CeEEEEECCCCcEE-Eecc-CCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 003236 790 ETLELWNMTENKTL-TLSA-HDKLVSSLAASTVNGMVASASHDKCVKIWK 837 (837)
Q Consensus 790 g~I~IwDl~s~~~~-~l~~-h~~~V~sla~spdg~~LaSgs~DG~I~IWd 837 (837)
+.|++||..+++++ .+.+ |...|+++++. ...+++++.||.+++||
T Consensus 433 ~~Ik~WD~~~~~~~~~~~~~~~~~v~~l~~~--~~~il~s~~~~~~~l~d 480 (537)
T KOG0274|consen 433 GTIKLWDAEEGECLRTLEGRHVGGVSALALG--KEEILCSSDDGSVKLWD 480 (537)
T ss_pred ccEEEeecccCceeeeeccCCcccEEEeecC--cceEEEEecCCeeEEEe
Confidence 99999999999988 4555 56889888876 56788999999999997
|
|
| >KOG0293 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.95 E-value=5e-27 Score=246.21 Aligned_cols=276 Identities=20% Similarity=0.309 Sum_probs=235.8
Q ss_pred cccCCCeEEcccCCCceEEeecCCCCCCCCccccccccCCCeeeeEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEE
Q 003236 502 LTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVL 581 (837)
Q Consensus 502 l~~~~~~v~~Gs~D~~v~~w~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~H~~~V~sl~fSpdg~~Lasgs~Dg~I~V 581 (837)
+.....++|+++.|.+.-+|....+. .++...++.+|..+|.-+.||||.++|++++.|..+.+
T Consensus 232 FS~nGkyLAsaSkD~Taiiw~v~~d~----------------~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~l 295 (519)
T KOG0293|consen 232 FSHNGKYLASASKDSTAIIWIVVYDV----------------HFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSL 295 (519)
T ss_pred EcCCCeeEeeccCCceEEEEEEecCc----------------ceeeeeeeecccCceEEEEECCCCCeEEecCchHheee
Confidence 34445899999999999999664431 25667889999999999999999999999999999999
Q ss_pred EeCCCCeEEEEec-cCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeEEeec-cccceEEEEEcCCCCeEEEEE
Q 003236 582 WCTESFTVKSTLE-EHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTG-HSTTVMSLDFHPSKEDLLCSC 659 (837)
Q Consensus 582 Wd~~t~~~~~~l~-~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~~~~~~~~~~~-h~~~V~sl~fspdg~~llasg 659 (837)
||+.++.+...+. +|...+.+++|.|||..+++|+.|+.|..||++... .....+ ....|.+++..+||+.+++.+
T Consensus 296 wDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn~--~~~W~gvr~~~v~dlait~Dgk~vl~v~ 373 (519)
T KOG0293|consen 296 WDVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGNI--LGNWEGVRDPKVHDLAITYDGKYVLLVT 373 (519)
T ss_pred ccCCcchhhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecCCcch--hhcccccccceeEEEEEcCCCcEEEEEe
Confidence 9999999887774 346889999999999999999999999999998643 233332 235699999999999777555
Q ss_pred eCCCcEEEEECCCCeeeeEEecCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEcCCCCC--EEEEEEcC-CC
Q 003236 660 DNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQ--VHSVCWNT-SG 736 (837)
Q Consensus 660 s~Dg~I~vwDl~t~~~i~~~~~~~~i~sl~~sp~g~~llags~dg~I~iwDl~s~~~~~~l~~h~~~--V~sl~~sp-dg 736 (837)
.|..|++++.++...+..+..+.+|+++.++.+++++++.-.+..|.+||++..+.+..+.||... |..-||-- +.
T Consensus 374 -~d~~i~l~~~e~~~dr~lise~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~ 452 (519)
T KOG0293|consen 374 -VDKKIRLYNREARVDRGLISEEQPITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRKYFGHKQGHFIIRSCFGGGND 452 (519)
T ss_pred -cccceeeechhhhhhhccccccCceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHHhhcccccceEEEeccCCCCc
Confidence 699999999999888888888899999999999999999999999999999998999999998753 34445644 55
Q ss_pred CEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCC-EEEEEEcCCeEEEEECCC
Q 003236 737 EYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFP-SLLVIGCYETLELWNMTE 799 (837)
Q Consensus 737 ~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fspdg~-~L~sgs~dg~I~IwDl~s 799 (837)
.++++|+ |+.|+||+..++ +.+.++.+|...|.+++|+|..+ .+++++.||+|+||-...
T Consensus 453 ~fiaSGSED~kvyIWhr~sg---kll~~LsGHs~~vNcVswNP~~p~m~ASasDDgtIRIWg~~~ 514 (519)
T KOG0293|consen 453 KFIASGSEDSKVYIWHRISG---KLLAVLSGHSKTVNCVSWNPADPEMFASASDDGTIRIWGPSD 514 (519)
T ss_pred ceEEecCCCceEEEEEccCC---ceeEeecCCcceeeEEecCCCCHHHhhccCCCCeEEEecCCc
Confidence 8999999 999999999998 89999999999999999999764 578889999999997653
|
|
| >KOG0289 consensus mRNA splicing factor [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.8e-26 Score=242.28 Aligned_cols=277 Identities=25% Similarity=0.368 Sum_probs=244.0
Q ss_pred CCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeE
Q 003236 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLR 634 (837)
Q Consensus 555 ~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~~~~~~~ 634 (837)
...|+++...+....+++|+.|..+.++|......+.++++|...|+.+.|+++...+++++.|..|+||...... ...
T Consensus 219 ~pgi~ald~~~s~~~ilTGG~d~~av~~d~~s~q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s-~~~ 297 (506)
T KOG0289|consen 219 TPGITALDIIPSSSKILTGGEDKTAVLFDKPSNQILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSS-EPT 297 (506)
T ss_pred CCCeeEEeecCCCCcceecCCCCceEEEecchhhhhhhccCcceEEEEEEeccchhheeecCCcceEEeecccccc-Ccc
Confidence 3458888888887899999999999999999999999999999999999999999999999999999999998765 466
Q ss_pred EeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeeEEecC---CCeeEEEEecCCCEEEEEEcCCeEEEEEC
Q 003236 635 TFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ---SGATQMRFQPRLGRILAAAIENYISILDV 711 (837)
Q Consensus 635 ~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~~---~~i~sl~~sp~g~~llags~dg~I~iwDl 711 (837)
....|..+|+.+..+|.|++++ +++.|+++.+.|++++.++...... -.+++.+|+|||..|.+|..|+.|+|||+
T Consensus 298 ~~~~h~~~V~~ls~h~tgeYll-sAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdl 376 (506)
T KOG0289|consen 298 SSRPHEEPVTGLSLHPTGEYLL-SASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDL 376 (506)
T ss_pred ccccccccceeeeeccCCcEEE-EecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEEeccCCCceEEEEEc
Confidence 7778999999999999988655 8889999999999999998887764 34899999999999999999999999999
Q ss_pred CCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeec-CCCceEEEEEeCCCCEEEEEEcC
Q 003236 712 ETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSC-TGNKFHSCVFHPTFPSLLVIGCY 789 (837)
Q Consensus 712 ~s~~~~~~l~~h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~-~~~~I~sv~fspdg~~L~sgs~d 789 (837)
.++..+..|.+|.++|..|.|+.+|.+|+++. |+.|++||++... .+.++.. ....+.++.|...|.++++++.+
T Consensus 377 ks~~~~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~---n~kt~~l~~~~~v~s~~fD~SGt~L~~~g~~ 453 (506)
T KOG0289|consen 377 KSQTNVAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLK---NFKTIQLDEKKEVNSLSFDQSGTYLGIAGSD 453 (506)
T ss_pred CCccccccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehhhc---ccceeeccccccceeEEEcCCCCeEEeecce
Confidence 99999999999999999999999999999999 7789999999874 3333332 23479999999999999999887
Q ss_pred CeEEEEECCCCc--EE-EeccCCCCeeEEEEeCCCCEEEEEECCCcEEEe
Q 003236 790 ETLELWNMTENK--TL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIW 836 (837)
Q Consensus 790 g~I~IwDl~s~~--~~-~l~~h~~~V~sla~spdg~~LaSgs~DG~I~IW 836 (837)
=.|++++-.+.. .+ .+..|.+..+++.|..+..++++++.|..++|+
T Consensus 454 l~Vy~~~k~~k~W~~~~~~~~~sg~st~v~Fg~~aq~l~s~smd~~l~~~ 503 (506)
T KOG0289|consen 454 LQVYICKKKTKSWTEIKELADHSGLSTGVRFGEHAQYLASTSMDAILRLY 503 (506)
T ss_pred eEEEEEecccccceeeehhhhcccccceeeecccceEEeeccchhheEEe
Confidence 778777755443 33 566888899999999999999999999999886
|
|
| >PTZ00421 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.7e-25 Score=256.91 Aligned_cols=264 Identities=16% Similarity=0.231 Sum_probs=210.0
Q ss_pred CCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEE-------------EEeccCCCCeEEEEEcC-CCCEEEEEeCCCeE
Q 003236 556 SKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVK-------------STLEEHTQWITDVRFSP-SLSRLATSSADRTV 621 (837)
Q Consensus 556 ~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~~-------------~~l~~h~~~I~~l~fsp-dg~~Latgs~Dg~I 621 (837)
..|....+++|+..+++++.+..+..|+...+..+ ..+.+|.+.|++++|+| ++.+|++|+.|++|
T Consensus 21 ~~i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtI 100 (493)
T PTZ00421 21 LNVTPSTALWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQKLFTASEDGTI 100 (493)
T ss_pred eccccccccCCCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCCCEEEEEeCCCEE
Confidence 34556666667666676766666667765443322 23678999999999999 88999999999999
Q ss_pred EEEEcCCCC------ceeEEeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeeEEec-CCCeeEEEEecCC
Q 003236 622 RVWDTENPD------YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRL 694 (837)
Q Consensus 622 ~IWDl~~~~------~~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~-~~~i~sl~~sp~g 694 (837)
+|||+.+.. .++..+.+|...|.+++|+|++..+|++++.|+.|++||+++++.+..+.. ...|.+++|+|++
T Consensus 101 kIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~V~sla~spdG 180 (493)
T PTZ00421 101 MGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKCHSDQITSLEWNLDG 180 (493)
T ss_pred EEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEcCCCCceEEEEEECCC
Confidence 999997643 246778899999999999998777888999999999999999998888764 5679999999999
Q ss_pred CEEEEEEcCCeEEEEECCCCeEEEEEcCCCCC-EEEEEEcCCCCEEEEEe-----CCeEEEEEcCCCCCceeEEEeec-C
Q 003236 695 GRILAAAIENYISILDVETQVCRLKLQGHKNQ-VHSVCWNTSGEYLASVS-----DELVRVWSIGSGSKGECIHELSC-T 767 (837)
Q Consensus 695 ~~llags~dg~I~iwDl~s~~~~~~l~~h~~~-V~sl~~spdg~~Lasgs-----Dg~I~IwDl~s~~~~~~i~~~~~-~ 767 (837)
..|++++.|+.|++||+++++.+..+.+|.+. +..+.|.+++..|++++ |+.|++||+++... .+..... .
T Consensus 181 ~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~--p~~~~~~d~ 258 (493)
T PTZ00421 181 SLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMAS--PYSTVDLDQ 258 (493)
T ss_pred CEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCC--ceeEeccCC
Confidence 99999999999999999999999999888765 45678898887776643 68999999987642 3333332 2
Q ss_pred CCceEEEEEeCCCCEEEEEE-cCCeEEEEECCCCcEEEe--ccCCCCeeEEEEeCCC
Q 003236 768 GNKFHSCVFHPTFPSLLVIG-CYETLELWNMTENKTLTL--SAHDKLVSSLAASTVN 821 (837)
Q Consensus 768 ~~~I~sv~fspdg~~L~sgs-~dg~I~IwDl~s~~~~~l--~~h~~~V~sla~spdg 821 (837)
...+..+.|++++..|++++ .|+.|++||+.+++.+.. ..+..++..++|.|.-
T Consensus 259 ~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~~~~~~~s~~~~~g~~~~pk~ 315 (493)
T PTZ00421 259 SSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERLTFCSSYSSVEPHKGLCMMPKW 315 (493)
T ss_pred CCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceEEEeeccCCCCCcceEecccc
Confidence 34566678999999999888 499999999999887632 3455678888888753
|
|
| >KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.95 E-value=3e-26 Score=254.91 Aligned_cols=268 Identities=22% Similarity=0.390 Sum_probs=232.1
Q ss_pred EEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeEEeec-
Q 003236 560 SCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTG- 638 (837)
Q Consensus 560 sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~~~~~~~~~~~- 638 (837)
-+.|+. ...||+|. ...|++|+..++........+.+.|+++.|+++|.+|++|..+|.|.|||..+.+. +..+.+
T Consensus 182 lldWss-~n~laVal-g~~vylW~~~s~~v~~l~~~~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~-~~~~~~~ 258 (484)
T KOG0305|consen 182 LLDWSS-ANVLAVAL-GQSVYLWSASSGSVTELCSFGEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKK-TRTLRGS 258 (484)
T ss_pred Hhhccc-CCeEEEEe-cceEEEEecCCCceEEeEecCCCceEEEEECCCCCEEEEeecCCeEEEEehhhccc-cccccCC
Confidence 367773 44777765 45899999999887766666689999999999999999999999999999998665 666666
Q ss_pred cccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeeE-Ee-cCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeE
Q 003236 639 HSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGV-FK-CQSGATQMRFQPRLGRILAAAIENYISILDVETQVC 716 (837)
Q Consensus 639 h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~-~~-~~~~i~sl~~sp~g~~llags~dg~I~iwDl~s~~~ 716 (837)
|...|.+++|. ..++.+|+.|+.|..+|++..+.... +. +...|..+.|++++.++++|+.|+.+.|||.....+
T Consensus 259 h~~rvg~laW~---~~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p 335 (484)
T KOG0305|consen 259 HASRVGSLAWN---SSVLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEP 335 (484)
T ss_pred cCceeEEEecc---CceEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEECCCCCeeccCCCccceEeccCCCccc
Confidence 99999999999 45788999999999999998765554 33 456799999999999999999999999999988899
Q ss_pred EEEEcCCCCCEEEEEEcC-CCCEEEEEe---CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEc--CC
Q 003236 717 RLKLQGHKNQVHSVCWNT-SGEYLASVS---DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGC--YE 790 (837)
Q Consensus 717 ~~~l~~h~~~V~sl~~sp-dg~~Lasgs---Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fspdg~~L~sgs~--dg 790 (837)
+..+..|...|..++|+| ...+||+|+ |++|++||+.++ ..+..+. .+..|.++.|++..+.|+++-. ++
T Consensus 336 ~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g---~~i~~vd-tgsQVcsL~Wsk~~kEi~sthG~s~n 411 (484)
T KOG0305|consen 336 KFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTG---ARIDSVD-TGSQVCSLIWSKKYKELLSTHGYSEN 411 (484)
T ss_pred cEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCC---cEecccc-cCCceeeEEEcCCCCEEEEecCCCCC
Confidence 999999999999999999 456788876 999999999988 5555544 4788999999999988887655 45
Q ss_pred eEEEEECCCCcEE-EeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 003236 791 TLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 837 (837)
Q Consensus 791 ~I~IwDl~s~~~~-~l~~h~~~V~sla~spdg~~LaSgs~DG~I~IWd 837 (837)
.|.||++.+.+.+ .+.+|...|..++++|||..|++|+.|.++++|+
T Consensus 412 ~i~lw~~ps~~~~~~l~gH~~RVl~la~SPdg~~i~t~a~DETlrfw~ 459 (484)
T KOG0305|consen 412 QITLWKYPSMKLVAELLGHTSRVLYLALSPDGETIVTGAADETLRFWN 459 (484)
T ss_pred cEEEEeccccceeeeecCCcceeEEEEECCCCCEEEEecccCcEEecc
Confidence 8999999998777 7889999999999999999999999999999996
|
|
| >KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription] | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.2e-26 Score=265.01 Aligned_cols=279 Identities=20% Similarity=0.296 Sum_probs=236.2
Q ss_pred CCCCeEEEEEcCCCCEEEEEE--CCCcEEEEeCCC------------CeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCC
Q 003236 554 STSKVESCHFSPDGKLLATGG--HDKKAVLWCTES------------FTVKSTLEEHTQWITDVRFSPSLSRLATSSADR 619 (837)
Q Consensus 554 H~~~V~sl~fSpdg~~Lasgs--~Dg~I~VWd~~t------------~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg 619 (837)
+...|.+|+.+|||..+|||+ .|+.++||+.+. .+.+.....|.+.|+|+.|++||++||+||+|+
T Consensus 12 ~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD~ 91 (942)
T KOG0973|consen 12 NEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGSDDR 91 (942)
T ss_pred CCeeEEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEeeccCcc
Confidence 445699999999999999999 899999997542 233456678999999999999999999999999
Q ss_pred eEEEEEcCC----CC-------------ceeEEeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeeEEec-
Q 003236 620 TVRVWDTEN----PD-------------YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC- 681 (837)
Q Consensus 620 ~I~IWDl~~----~~-------------~~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~- 681 (837)
.|.||+... .. .++..+.+|...|..++|+|++. ++++++.|++|.+||..+.+++.++..
T Consensus 92 ~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~-~lvS~s~DnsViiwn~~tF~~~~vl~~H 170 (942)
T KOG0973|consen 92 LVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDS-LLVSVSLDNSVIIWNAKTFELLKVLRGH 170 (942)
T ss_pred eEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCcc-EEEEecccceEEEEccccceeeeeeecc
Confidence 999999872 00 24678889999999999999855 888999999999999999999988875
Q ss_pred CCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEcCCC------CCEEEEEEcCCCCEEEEEe--CC---eEEEE
Q 003236 682 QSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHK------NQVHSVCWNTSGEYLASVS--DE---LVRVW 750 (837)
Q Consensus 682 ~~~i~sl~~sp~g~~llags~dg~I~iwDl~s~~~~~~l~~h~------~~V~sl~~spdg~~Lasgs--Dg---~I~Iw 750 (837)
.+.|..+.|.|-|++|++-+.|++|+||++.+....+.+.++- ..+..+.|+|||.+|++.. .+ ++.|.
T Consensus 171 ~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~Ii 250 (942)
T KOG0973|consen 171 QSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAII 250 (942)
T ss_pred cccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchhhccCCcceeEEE
Confidence 5679999999999999999999999999988877777766542 3578899999999999976 33 78888
Q ss_pred EcCCCCCceeEEEeecCCCceEEEEEeCC-----CC------------EEEEEEcCCeEEEEECCCCcEEE--eccCCCC
Q 003236 751 SIGSGSKGECIHELSCTGNKFHSCVFHPT-----FP------------SLLVIGCYETLELWNMTENKTLT--LSAHDKL 811 (837)
Q Consensus 751 Dl~s~~~~~~i~~~~~~~~~I~sv~fspd-----g~------------~L~sgs~dg~I~IwDl~s~~~~~--l~~h~~~ 811 (837)
+-.+. +.-..+.+|..++.++.|+|. .. .+++|+.|++|.||.....+++. ..-....
T Consensus 251 eR~tW---k~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~vi~~lf~~S 327 (942)
T KOG0973|consen 251 ERGTW---KVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPLFVIHNLFNKS 327 (942)
T ss_pred ecCCc---eeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCCchhhhhhhhcCc
Confidence 87655 667788899999999999873 11 57788999999999987777662 2334678
Q ss_pred eeEEEEeCCCCEEEEEECCCcEEEe
Q 003236 812 VSSLAASTVNGMVASASHDKCVKIW 836 (837)
Q Consensus 812 V~sla~spdg~~LaSgs~DG~I~IW 836 (837)
|.+++|+|||..|+.||.||+|.+.
T Consensus 328 I~DmsWspdG~~LfacS~DGtV~~i 352 (942)
T KOG0973|consen 328 IVDMSWSPDGFSLFACSLDGTVALI 352 (942)
T ss_pred eeeeeEcCCCCeEEEEecCCeEEEE
Confidence 9999999999999999999999875
|
|
| >KOG0283 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.8e-26 Score=262.31 Aligned_cols=247 Identities=19% Similarity=0.333 Sum_probs=203.3
Q ss_pred eEEEEec-cCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCC--------------------------------C-----
Q 003236 588 TVKSTLE-EHTQWITDVRFSPSLSRLATSSADRTVRVWDTEN--------------------------------P----- 629 (837)
Q Consensus 588 ~~~~~l~-~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~--------------------------------~----- 629 (837)
.....+. .|.+.|+++.|++||+|||+|+.|+.|+||.+.. .
T Consensus 257 ~~~Qe~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~ 336 (712)
T KOG0283|consen 257 TVVQEISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRT 336 (712)
T ss_pred EEeeccccccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccc
Confidence 3344555 8999999999999999999999999999998764 0
Q ss_pred ----------------------CceeEEeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeeEEecCCCeeE
Q 003236 630 ----------------------DYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQ 687 (837)
Q Consensus 630 ----------------------~~~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~~~~i~s 687 (837)
..++..+.||.+.|.+|.|+.+ .+|++++.|.+|++|++...+|+.+|.|..-|+|
T Consensus 337 s~~~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn--~fLLSSSMDKTVRLWh~~~~~CL~~F~HndfVTc 414 (712)
T KOG0283|consen 337 SSSRKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKN--NFLLSSSMDKTVRLWHPGRKECLKVFSHNDFVTC 414 (712)
T ss_pred cccccccCCccccCCCccccccccchhhhhccchhheecccccC--CeeEeccccccEEeecCCCcceeeEEecCCeeEE
Confidence 0234567789999999999976 3677999999999999999999999999999999
Q ss_pred EEEec-CCCEEEEEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEe-
Q 003236 688 MRFQP-RLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHEL- 764 (837)
Q Consensus 688 l~~sp-~g~~llags~dg~I~iwDl~s~~~~~~l~~h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~- 764 (837)
++|+| |.++|++|+-|+.|+||++...+.+.-.. -..-|+++||.|||++.++|+ +|.+++|+..........+..
T Consensus 415 VaFnPvDDryFiSGSLD~KvRiWsI~d~~Vv~W~D-l~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~ 493 (712)
T KOG0283|consen 415 VAFNPVDDRYFISGSLDGKVRLWSISDKKVVDWND-LRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRL 493 (712)
T ss_pred EEecccCCCcEeecccccceEEeecCcCeeEeehh-hhhhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEee
Confidence 99999 67899999999999999999877665544 448899999999999999999 999999999876321111111
Q ss_pred ----ecCCCceEEEEEeCCCC-EEEEEEcCCeEEEEECCCCcEE-EeccCC--CCeeEEEEeCCCCEEEEEECCCcEEEe
Q 003236 765 ----SCTGNKFHSCVFHPTFP-SLLVIGCYETLELWNMTENKTL-TLSAHD--KLVSSLAASTVNGMVASASHDKCVKIW 836 (837)
Q Consensus 765 ----~~~~~~I~sv~fspdg~-~L~sgs~dg~I~IwDl~s~~~~-~l~~h~--~~V~sla~spdg~~LaSgs~DG~I~IW 836 (837)
+.....|+.+.|.|... .|++.+.|..|+|||.++..++ .+.++. ..-....|+.||++|+++++|..|+||
T Consensus 494 ~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~seDs~VYiW 573 (712)
T KOG0283|consen 494 HNKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVSASEDSWVYIW 573 (712)
T ss_pred ccCccccCceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCCcceeeeEccCCCEEEEeecCceEEEE
Confidence 11133799999987654 5999999999999999888776 555443 233456788999999999999999999
Q ss_pred C
Q 003236 837 K 837 (837)
Q Consensus 837 d 837 (837)
+
T Consensus 574 ~ 574 (712)
T KOG0283|consen 574 K 574 (712)
T ss_pred e
Confidence 6
|
|
| >KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.95 E-value=6.8e-26 Score=230.23 Aligned_cols=270 Identities=17% Similarity=0.301 Sum_probs=223.4
Q ss_pred CCCCCeEEEEEcC-CCCEEEEEECCCcEEEEeCCC-CeEE-EEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCC
Q 003236 553 ASTSKVESCHFSP-DGKLLATGGHDKKAVLWCTES-FTVK-STLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENP 629 (837)
Q Consensus 553 ~H~~~V~sl~fSp-dg~~Lasgs~Dg~I~VWd~~t-~~~~-~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~~ 629 (837)
.-.+.|.+|+||| ...+|+.|+.|++|++|++.. +..+ +....|.++|.+++|+.||..+++|+.|+.+++||+.++
T Consensus 25 pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~ 104 (347)
T KOG0647|consen 25 PPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASG 104 (347)
T ss_pred CcccchheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCC
Confidence 4456799999999 556777999999999999986 3333 445679999999999999999999999999999999987
Q ss_pred CceeEEeeccccceEEEEEcCCCC-eEEEEEeCCCcEEEEECCCCeeeeEEecCCCeeEEEEecCCCEEEEEEcCCeEEE
Q 003236 630 DYSLRTFTGHSTTVMSLDFHPSKE-DLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISI 708 (837)
Q Consensus 630 ~~~~~~~~~h~~~V~sl~fspdg~-~llasgs~Dg~I~vwDl~t~~~i~~~~~~~~i~sl~~sp~g~~llags~dg~I~i 708 (837)
. +..+..|.++|.++.|-+... .+|++|+.|++|++||.+....+.++..+..++++..-. ..++++..+..|.+
T Consensus 105 Q--~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LPeRvYa~Dv~~--pm~vVata~r~i~v 180 (347)
T KOG0647|consen 105 Q--VSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLPERVYAADVLY--PMAVVATAERHIAV 180 (347)
T ss_pred C--eeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeeccceeeehhccC--ceeEEEecCCcEEE
Confidence 5 678888999999999986533 478899999999999999999999999999988887654 46888889999999
Q ss_pred EECCCCeEEE-EEc-CCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCC---------CceEEEEE
Q 003236 709 LDVETQVCRL-KLQ-GHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTG---------NKFHSCVF 776 (837)
Q Consensus 709 wDl~s~~~~~-~l~-~h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~---------~~I~sv~f 776 (837)
|+++.+.... ... .-.-.++||+...|....+.|+ +|.+.|..+..+.. ..-..|++|. ..|.+++|
T Consensus 181 ynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~-~~nFtFkCHR~~~~~~~~VYaVNsi~F 259 (347)
T KOG0647|consen 181 YNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNP-KDNFTFKCHRSTNSVNDDVYAVNSIAF 259 (347)
T ss_pred EEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCc-cCceeEEEeccCCCCCCceEEecceEe
Confidence 9998763322 211 1334688999999888888899 99999999987643 3334455554 24788999
Q ss_pred eCCCCEEEEEEcCCeEEEEECCCCcEE-EeccCCCCeeEEEEeCCCCEEEEE
Q 003236 777 HPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASA 827 (837)
Q Consensus 777 spdg~~L~sgs~dg~I~IwDl~s~~~~-~l~~h~~~V~sla~spdg~~LaSg 827 (837)
+|....|+++|+||++.+||-.....+ ....|..+|++++|+.+|.++|-+
T Consensus 260 hP~hgtlvTaGsDGtf~FWDkdar~kLk~s~~~~qpItcc~fn~~G~ifaYA 311 (347)
T KOG0647|consen 260 HPVHGTLVTAGSDGTFSFWDKDARTKLKTSETHPQPITCCSFNRNGSIFAYA 311 (347)
T ss_pred ecccceEEEecCCceEEEecchhhhhhhccCcCCCccceeEecCCCCEEEEE
Confidence 999999999999999999998776655 567899999999999999988755
|
|
| >KOG0294 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.5e-25 Score=228.94 Aligned_cols=294 Identities=18% Similarity=0.283 Sum_probs=236.9
Q ss_pred EEcccCCCceEEeecCCCCCCCCccccccccCCCeeeeEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCe
Q 003236 509 VDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFT 588 (837)
Q Consensus 509 v~~Gs~D~~v~~w~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~H~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~ 588 (837)
+.+|+....+.-|......+. .......++..+..+.+|.++|+|++.+ +.++|+|+.|-+|+|||+.+..
T Consensus 4 iIvGtYE~~i~Gf~l~~~~~~-------~~~s~~~~l~~lF~~~aH~~sitavAVs--~~~~aSGssDetI~IYDm~k~~ 74 (362)
T KOG0294|consen 4 IIVGTYEHVILGFKLDPEPKG-------CTDSVKPTLKPLFAFSAHAGSITALAVS--GPYVASGSSDETIHIYDMRKRK 74 (362)
T ss_pred EEEeeeeeEEEEEEeccCccc-------cccccceeeeccccccccccceeEEEec--ceeEeccCCCCcEEEEeccchh
Confidence 355777666666643322211 1122345667788889999999999996 8899999999999999999999
Q ss_pred EEEEeccCCCCeEEEEEcCCCC--EEEEEeCCCeEEEEEcCCCCceeEEeeccccceEEEEEcCCCCeEEEEEeCCCcEE
Q 003236 589 VKSTLEEHTQWITDVRFSPSLS--RLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIR 666 (837)
Q Consensus 589 ~~~~l~~h~~~I~~l~fspdg~--~Latgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~ 666 (837)
.+..+-.|.+.|+++.|.++-. .|++|+.||.|.+|++..- ..+..+.+|.+.|+.++++|.++ +.++.+.|+.++
T Consensus 75 qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W-~~~~slK~H~~~Vt~lsiHPS~K-LALsVg~D~~lr 152 (362)
T KOG0294|consen 75 QLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSW-ELLKSLKAHKGQVTDLSIHPSGK-LALSVGGDQVLR 152 (362)
T ss_pred hhcceeccccceEEEEecCCcchhheeeecCCCcEEEEEcCCe-EEeeeecccccccceeEecCCCc-eEEEEcCCceee
Confidence 9999999999999999999755 8999999999999999975 56899999999999999999976 666888899999
Q ss_pred EEECCCCeeeeEEecCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCe
Q 003236 667 YWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVSDEL 746 (837)
Q Consensus 667 vwDl~t~~~i~~~~~~~~i~sl~~sp~g~~llags~dg~I~iwDl~s~~~~~~l~~h~~~V~sl~~spdg~~LasgsDg~ 746 (837)
.||+-+|+...........+.+.|+|.|.+++++.. +.|-||.+++......+. ....+.|+.|...+.+++.+.|+.
T Consensus 153 ~WNLV~Gr~a~v~~L~~~at~v~w~~~Gd~F~v~~~-~~i~i~q~d~A~v~~~i~-~~~r~l~~~~l~~~~L~vG~d~~~ 230 (362)
T KOG0294|consen 153 TWNLVRGRVAFVLNLKNKATLVSWSPQGDHFVVSGR-NKIDIYQLDNASVFREIE-NPKRILCATFLDGSELLVGGDNEW 230 (362)
T ss_pred eehhhcCccceeeccCCcceeeEEcCCCCEEEEEec-cEEEEEecccHhHhhhhh-ccccceeeeecCCceEEEecCCce
Confidence 999999998888888777888999999998887765 568899988776555544 335688888875544444444889
Q ss_pred EEEEEcCCCCCceeEEEeecCCCceEEEEE--eCCCCEEEEEEcCCeEEEEECCCC-----cEEEeccCCCCeeEEEEe
Q 003236 747 VRVWSIGSGSKGECIHELSCTGNKFHSCVF--HPTFPSLLVIGCYETLELWNMTEN-----KTLTLSAHDKLVSSLAAS 818 (837)
Q Consensus 747 I~IwDl~s~~~~~~i~~~~~~~~~I~sv~f--spdg~~L~sgs~dg~I~IwDl~s~-----~~~~l~~h~~~V~sla~s 818 (837)
|++||..+. .+...+..|...|-++.+ .|++.+|+++++||.|+|||++.. +.+........++|+...
T Consensus 231 i~~~D~ds~---~~~~~~~AH~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~~~~k~~~~~l~e~n~~~RltCl~~~ 306 (362)
T KOG0294|consen 231 ISLKDTDSD---TPLTEFLAHENRVKDIASYTNPEHEYLVTASSDGFIKVWDIDMETKKRPTLLAELNTNVRLTCLRVK 306 (362)
T ss_pred EEEeccCCC---ccceeeecchhheeeeEEEecCCceEEEEeccCceEEEEEccccccCCcceeEEeecCCccceeeeh
Confidence 999999885 788999999999999884 567889999999999999999766 333444446677777653
|
|
| >KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.95 E-value=6.8e-26 Score=255.43 Aligned_cols=272 Identities=20% Similarity=0.364 Sum_probs=230.1
Q ss_pred cccCCCeEEcccCCCceEEeecCCCCCCCCccccccccCCCeeeeEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEE
Q 003236 502 LTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVL 581 (837)
Q Consensus 502 l~~~~~~v~~Gs~D~~v~~w~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~H~~~V~sl~fSpdg~~Lasgs~Dg~I~V 581 (837)
+.+...++.++-..+.|.+|+..=. ..+..|.+|.++|..|+|+|++.++++|+.|.+|+|
T Consensus 17 FHP~rPwILtslHsG~IQlWDYRM~-------------------tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkV 77 (1202)
T KOG0292|consen 17 FHPKRPWILTSLHSGVIQLWDYRMG-------------------TLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKV 77 (1202)
T ss_pred cCCCCCEEEEeecCceeeeehhhhh-------------------hHHhhhhccCCccceeeecCCCCeEEecCCccEEEE
Confidence 3445578888889999999955322 235567899999999999999999999999999999
Q ss_pred EeCCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeEEeeccccceEEEEEcCCCCeEEEEEeC
Q 003236 582 WCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDN 661 (837)
Q Consensus 582 Wd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~sl~fspdg~~llasgs~ 661 (837)
|+.++.+++.++.+|-+.|..+.|++.-.+|+++|.|-+|+||+..+.+ ++..+.||...|+|..|+|..+ ++++++-
T Consensus 78 WnYk~rrclftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~-~iavltGHnHYVMcAqFhptED-lIVSaSL 155 (1202)
T KOG0292|consen 78 WNYKTRRCLFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRK-CIAVLTGHNHYVMCAQFHPTED-LIVSASL 155 (1202)
T ss_pred EecccceehhhhccccceeEEeeccCCCceEEEccCCCeEEEEeccCCc-eEEEEecCceEEEeeccCCccc-eEEEecc
Confidence 9999999999999999999999999999999999999999999999866 5999999999999999999855 7889999
Q ss_pred CCcEEEEECCCCe---------------------------eee--EEe-cCCCeeEEEEecCCCEEEEEEcCCeEEEEEC
Q 003236 662 NSEIRYWSINNGS---------------------------CAG--VFK-CQSGATQMRFQPRLGRILAAAIENYISILDV 711 (837)
Q Consensus 662 Dg~I~vwDl~t~~---------------------------~i~--~~~-~~~~i~sl~~sp~g~~llags~dg~I~iwDl 711 (837)
|-+|+|||+..-+ ++. .+. +..+|+-++|+|.-..|++|+.|..|++|.+
T Consensus 156 DQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrm 235 (1202)
T KOG0292|consen 156 DQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRM 235 (1202)
T ss_pred cceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecCCcceeeEEEe
Confidence 9999999985311 111 111 2456899999999999999999999999998
Q ss_pred CCCe--EEEEEcCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEc
Q 003236 712 ETQV--CRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGC 788 (837)
Q Consensus 712 ~s~~--~~~~l~~h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fspdg~~L~sgs~ 788 (837)
...+ .+.+..+|.+.|.++-|+|..++|++.+ |+.|+|||+... ..+.++......++.++.+|..+.+++| .
T Consensus 236 netKaWEvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kR---t~v~tfrrendRFW~laahP~lNLfAAg-H 311 (1202)
T KOG0292|consen 236 NETKAWEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKR---TSVQTFRRENDRFWILAAHPELNLFAAG-H 311 (1202)
T ss_pred ccccceeehhhhcccCCcceEEecCccceeEecCCCccEEEEecccc---cceeeeeccCCeEEEEEecCCcceeeee-c
Confidence 7543 4567789999999999999999999988 999999999877 7888888888999999999998855544 4
Q ss_pred CCeEEEEECC
Q 003236 789 YETLELWNMT 798 (837)
Q Consensus 789 dg~I~IwDl~ 798 (837)
|+-+.+|.++
T Consensus 312 DsGm~VFkle 321 (1202)
T KOG0292|consen 312 DSGMIVFKLE 321 (1202)
T ss_pred CCceEEEEEc
Confidence 4444455443
|
|
| >KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.95 E-value=6e-27 Score=238.44 Aligned_cols=278 Identities=19% Similarity=0.327 Sum_probs=237.0
Q ss_pred cccCCCeEEcccCCCceEEeecCCCCCCCCccccccccCCCeeeeEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEE
Q 003236 502 LTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVL 581 (837)
Q Consensus 502 l~~~~~~v~~Gs~D~~v~~w~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~H~~~V~sl~fSpdg~~Lasgs~Dg~I~V 581 (837)
+.+...++++||.|+-+++|....+.... ...+..-..+--|.++|.|++||.|...||+|+.||.|+|
T Consensus 221 FSPDgqyLvsgSvDGFiEVWny~~GKlrK-----------DLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKv 289 (508)
T KOG0275|consen 221 FSPDGQYLVSGSVDGFIEVWNYTTGKLRK-----------DLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKV 289 (508)
T ss_pred eCCCCceEeeccccceeeeehhccchhhh-----------hhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEE
Confidence 34455899999999999999766553221 1122222334568899999999999999999999999999
Q ss_pred EeCCCCeEEEEec-cCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeEEeeccccceEEEEEcCCCCeEEEEEe
Q 003236 582 WCTESFTVKSTLE-EHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCD 660 (837)
Q Consensus 582 Wd~~t~~~~~~l~-~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~sl~fspdg~~llasgs 660 (837)
|.+.+|.+++.+. .|+..|+|+.|+.|+..+++++.|.+++|.-+..++. ++.+.+|...|+...|.++|..++ +++
T Consensus 290 Wri~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~-LKEfrGHsSyvn~a~ft~dG~~ii-saS 367 (508)
T KOG0275|consen 290 WRIETGQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKC-LKEFRGHSSYVNEATFTDDGHHII-SAS 367 (508)
T ss_pred EEEecchHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccchh-HHHhcCccccccceEEcCCCCeEE-Eec
Confidence 9999999999996 8999999999999999999999999999999998774 899999999999999999988655 899
Q ss_pred CCCcEEEEECCCCeeeeEEec---CCCeeEEEEecCC-CEEEEEEcCCeEEEEECCCCeEEEEEcC---CCCCEEEEEEc
Q 003236 661 NNSEIRYWSINNGSCAGVFKC---QSGATQMRFQPRL-GRILAAAIENYISILDVETQVCRLKLQG---HKNQVHSVCWN 733 (837)
Q Consensus 661 ~Dg~I~vwDl~t~~~i~~~~~---~~~i~sl~~sp~g-~~llags~dg~I~iwDl~s~~~~~~l~~---h~~~V~sl~~s 733 (837)
.||+|++|+.++.+|+.+|+. ...|.++...|.. ..++++...++|+|.++. |..++.+.. ..+...+.+.+
T Consensus 368 sDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~q-GQvVrsfsSGkREgGdFi~~~lS 446 (508)
T KOG0275|consen 368 SDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQ-GQVVRSFSSGKREGGDFINAILS 446 (508)
T ss_pred CCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEecc-ceEEeeeccCCccCCceEEEEec
Confidence 999999999999999999886 3457788777754 568888888999999986 556666643 34567788899
Q ss_pred CCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEE
Q 003236 734 TSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWN 796 (837)
Q Consensus 734 pdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fspdg~~L~sgs~dg~I~IwD 796 (837)
|.|.++++.+ |+.++.|.+.++ ..-+++..|...+..++-+|..+.|++-+.||.+++|.
T Consensus 447 pkGewiYcigED~vlYCF~~~sG---~LE~tl~VhEkdvIGl~HHPHqNllAsYsEDgllKLWk 507 (508)
T KOG0275|consen 447 PKGEWIYCIGEDGVLYCFSVLSG---KLERTLPVHEKDVIGLTHHPHQNLLASYSEDGLLKLWK 507 (508)
T ss_pred CCCcEEEEEccCcEEEEEEeecC---ceeeeeecccccccccccCcccchhhhhcccchhhhcC
Confidence 9999999988 999999999998 67778888999999999999999999999999999994
|
|
| >KOG0300 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.7e-26 Score=231.52 Aligned_cols=289 Identities=19% Similarity=0.313 Sum_probs=246.6
Q ss_pred eeeEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEE
Q 003236 544 TFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRV 623 (837)
Q Consensus 544 ~~~~~~~l~~H~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~I 623 (837)
.+..++.+.||.+.|+.++.......+.+++.|.+.+||.+++++++.++.+|.+.|++|+|++.+.++++++.|++..|
T Consensus 137 ~~~lvre~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHI 216 (481)
T KOG0300|consen 137 KFRLVRELEGHKDGIWHVAADSTQPICGTASADHTARIWSLESGACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHI 216 (481)
T ss_pred eEeehhhhcccccceeeehhhcCCcceeecccccceeEEeeccccceeeecccccceeeEEeccccceEEEccCCcchHH
Confidence 45667888999999999999888889999999999999999999999999999999999999999999999999999999
Q ss_pred EEcC------C---------------------------------CCceeEEeeccccceEEEEEcCCCCeEEEEEeCCCc
Q 003236 624 WDTE------N---------------------------------PDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSE 664 (837)
Q Consensus 624 WDl~------~---------------------------------~~~~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~ 664 (837)
|... . -..++..+.+|...|.+..|...+.. +++++.|.+
T Consensus 217 W~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q-~vTaSWDRT 295 (481)
T KOG0300|consen 217 WKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQ-MVTASWDRT 295 (481)
T ss_pred HHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcce-eeeeecccc
Confidence 9621 0 01245678899999999999987765 459999999
Q ss_pred EEEEECCCCeeeeEEec-CCCeeEEEEecCCCEEEEEEcCCeEEEEECCCC-eEEEEEcCCCCCEEEEEEcCCCCEEEEE
Q 003236 665 IRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAIENYISILDVETQ-VCRLKLQGHKNQVHSVCWNTSGEYLASV 742 (837)
Q Consensus 665 I~vwDl~t~~~i~~~~~-~~~i~sl~~sp~g~~llags~dg~I~iwDl~s~-~~~~~l~~h~~~V~sl~~spdg~~Lasg 742 (837)
-.+||+++++.+..+.. ....+.++-+|..+.+++.+.|.++++||++.. ..+..|.+|...|+++.|..+.+ +++|
T Consensus 296 AnlwDVEtge~v~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFReaI~sV~VFQGHtdtVTS~vF~~dd~-vVSg 374 (481)
T KOG0300|consen 296 ANLWDVETGEVVNILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREAIQSVAVFQGHTDTVTSVVFNTDDR-VVSG 374 (481)
T ss_pred ceeeeeccCceeccccCcchhccccccCCcceEEEEeccCceeEeccchhhcceeeeecccccceeEEEEecCCc-eeec
Confidence 99999999999998875 556888899999999999999999999999865 56788999999999999987665 5566
Q ss_pred e-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEEE-----eccCCCCeeEEE
Q 003236 743 S-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLT-----LSAHDKLVSSLA 816 (837)
Q Consensus 743 s-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fspdg~~L~sgs~dg~I~IwDl~s~~~~~-----l~~h~~~V~sla 816 (837)
+ |.+|+|||+++.. ..+.++. ...++..++++..++.|+.--.+..|++||+...++.+ ..+|...|+|++
T Consensus 375 SDDrTvKvWdLrNMR--splATIR-tdS~~NRvavs~g~~iIAiPhDNRqvRlfDlnG~RlaRlPrtsRqgHrRMV~c~A 451 (481)
T KOG0300|consen 375 SDDRTVKVWDLRNMR--SPLATIR-TDSPANRVAVSKGHPIIAIPHDNRQVRLFDLNGNRLARLPRTSRQGHRRMVTCCA 451 (481)
T ss_pred CCCceEEEeeecccc--Ccceeee-cCCccceeEeecCCceEEeccCCceEEEEecCCCccccCCcccccccceeeeeee
Confidence 6 8899999999864 3444444 36778999999999888888888899999999887663 348999999999
Q ss_pred EeCCC--CEEEEEECCCcEEEeC
Q 003236 817 ASTVN--GMVASASHDKCVKIWK 837 (837)
Q Consensus 817 ~spdg--~~LaSgs~DG~I~IWd 837 (837)
|..+- .-|++|+-|..+.-|+
T Consensus 452 W~eehp~cnLftcGFDR~v~gW~ 474 (481)
T KOG0300|consen 452 WLEEHPACNLFTCGFDRMVAGWK 474 (481)
T ss_pred ccccCcccccccccccceeeeeE
Confidence 98654 3578999999988885
|
|
| >KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.94 E-value=9.2e-26 Score=242.15 Aligned_cols=240 Identities=19% Similarity=0.261 Sum_probs=211.1
Q ss_pred CCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEeccCCCCeEEEEEcC-CCCEEEEEeCCCeEEEEEcCCCCc
Q 003236 553 ASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSP-SLSRLATSSADRTVRVWDTENPDY 631 (837)
Q Consensus 553 ~H~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~I~~l~fsp-dg~~Latgs~Dg~I~IWDl~~~~~ 631 (837)
.-.+.|++++|-.||++||+|+..|.|+|||+++...+..+.+|..+|..+.|+| ++..|++|+.|+.+++||+.+...
T Consensus 66 rFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v 145 (487)
T KOG0310|consen 66 RFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKSRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYV 145 (487)
T ss_pred hhccceeEEEeecCCeEEEccCCcCcEEEeccccHHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEE
Confidence 3445699999999999999999999999999877667788899999999999999 466788899999999999998664
Q ss_pred eeEEeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCC-eeeeEEecCCCeeEEEEecCCCEEEEEEcCCeEEEEE
Q 003236 632 SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNG-SCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILD 710 (837)
Q Consensus 632 ~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~-~~i~~~~~~~~i~sl~~sp~g~~llags~dg~I~iwD 710 (837)
...+.+|++.|.|.+|+|..+.++++|+.||.|++||++.. ..+..+.+..+|..+.+-|.|..|++++ .+.|++||
T Consensus 146 -~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~elnhg~pVe~vl~lpsgs~iasAg-Gn~vkVWD 223 (487)
T KOG0310|consen 146 -QAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVELNHGCPVESVLALPSGSLIASAG-GNSVKVWD 223 (487)
T ss_pred -EEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeEEecCCCceeeEEEcCCCCEEEEcC-CCeEEEEE
Confidence 77899999999999999999999999999999999999987 7888999999999999999987776655 57899999
Q ss_pred CCCC-eEEEEEcCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEc
Q 003236 711 VETQ-VCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGC 788 (837)
Q Consensus 711 l~s~-~~~~~l~~h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fspdg~~L~sgs~ 788 (837)
+-+| +.+.....|...|+|+++..++..|++++ |+.|+|||+.+. +.++.+. -.++|.+++.+|++..+++|..
T Consensus 224 l~~G~qll~~~~~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~---Kvv~s~~-~~~pvLsiavs~dd~t~viGms 299 (487)
T KOG0310|consen 224 LTTGGQLLTSMFNHNKTVTCLRLASDSTRLLSGSLDRHVKVFDTTNY---KVVHSWK-YPGPVLSIAVSPDDQTVVIGMS 299 (487)
T ss_pred ecCCceehhhhhcccceEEEEEeecCCceEeecccccceEEEEccce---EEEEeee-cccceeeEEecCCCceEEEecc
Confidence 9965 55556666999999999999999999999 999999997665 6666655 3678999999999999999999
Q ss_pred CCeEEEEECC
Q 003236 789 YETLELWNMT 798 (837)
Q Consensus 789 dg~I~IwDl~ 798 (837)
+|.+.+-+..
T Consensus 300 nGlv~~rr~~ 309 (487)
T KOG0310|consen 300 NGLVSIRRRE 309 (487)
T ss_pred cceeeeehhh
Confidence 9988776543
|
|
| >KOG0641 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.8e-24 Score=208.12 Aligned_cols=290 Identities=19% Similarity=0.257 Sum_probs=238.2
Q ss_pred eeeeEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCC------C---------eEEEEeccCCCCeEEEEEcC
Q 003236 543 FTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES------F---------TVKSTLEEHTQWITDVRFSP 607 (837)
Q Consensus 543 ~~~~~~~~l~~H~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t------~---------~~~~~l~~h~~~I~~l~fsp 607 (837)
..|..+..+. .+..|.+++|+|.|.+.|+|+..++++|.-... + -..+.-+.|.+.|+|++|+|
T Consensus 21 ~~f~~i~~l~-dsqairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~ 99 (350)
T KOG0641|consen 21 KHFEAINILE-DSQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSP 99 (350)
T ss_pred cceEEEEEec-chhheeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecC
Confidence 3455565554 456699999999999999999999998874321 1 11133457999999999999
Q ss_pred CCCEEEEEeCCCeEEEEEcCCCCc----eeEEeeccccceEEEEEcCC---CCeEEEEEe-CCCcEEEEECCCCeeeeEE
Q 003236 608 SLSRLATSSADRTVRVWDTENPDY----SLRTFTGHSTTVMSLDFHPS---KEDLLCSCD-NNSEIRYWSINNGSCAGVF 679 (837)
Q Consensus 608 dg~~Latgs~Dg~I~IWDl~~~~~----~~~~~~~h~~~V~sl~fspd---g~~llasgs-~Dg~I~vwDl~t~~~i~~~ 679 (837)
+|.+|++|+.|++|++.-++.... .-..+.-|.+.|..++|..+ +..++++++ .|..|++-|...|.....+
T Consensus 100 ~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a~ 179 (350)
T KOG0641|consen 100 CGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHAL 179 (350)
T ss_pred ccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCcceee
Confidence 999999999999999987664322 22567779999999999753 455666654 5778888899999988888
Q ss_pred ecCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEcC--C-----CCCEEEEEEcCCCCEEEEEe-CCeEEEEE
Q 003236 680 KCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQG--H-----KNQVHSVCWNTSGEYLASVS-DELVRVWS 751 (837)
Q Consensus 680 ~~~~~i~sl~~sp~g~~llags~dg~I~iwDl~s~~~~~~l~~--h-----~~~V~sl~~spdg~~Lasgs-Dg~I~IwD 751 (837)
..+.+-.-..++-++-.+++|+.|.+|++||++-..++.++.. | .+.|.+++..|.|++|++|. |....+||
T Consensus 180 sghtghilalyswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~dssc~lyd 259 (350)
T KOG0641|consen 180 SGHTGHILALYSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADSSCMLYD 259 (350)
T ss_pred cCCcccEEEEEEecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeeccCCCceEEEE
Confidence 7655544444566678899999999999999999988887653 2 35799999999999999999 99999999
Q ss_pred cCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCc-----EEEeccCCCCeeEEEEeCCCCEEEE
Q 003236 752 IGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENK-----TLTLSAHDKLVSSLAASTVNGMVAS 826 (837)
Q Consensus 752 l~s~~~~~~i~~~~~~~~~I~sv~fspdg~~L~sgs~dg~I~IwDl~s~~-----~~~l~~h~~~V~sla~spdg~~LaS 826 (837)
++.+ ..+..+..|...|.++.|+|...++++++.|..|++-|+...- .+....|...+..+.|+|..-.+++
T Consensus 260 irg~---r~iq~f~phsadir~vrfsp~a~yllt~syd~~ikltdlqgdla~el~~~vv~ehkdk~i~~rwh~~d~sfis 336 (350)
T KOG0641|consen 260 IRGG---RMIQRFHPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDLAHELPIMVVAEHKDKAIQCRWHPQDFSFIS 336 (350)
T ss_pred eeCC---ceeeeeCCCccceeEEEeCCCceEEEEecccceEEEeecccchhhcCceEEEEeccCceEEEEecCccceeee
Confidence 9998 7899999999999999999999999999999999999986532 3366789999999999999999999
Q ss_pred EECCCcEEEe
Q 003236 827 ASHDKCVKIW 836 (837)
Q Consensus 827 gs~DG~I~IW 836 (837)
.+.|.++.+|
T Consensus 337 ssadkt~tlw 346 (350)
T KOG0641|consen 337 SSADKTATLW 346 (350)
T ss_pred ccCcceEEEe
Confidence 9999999999
|
|
| >KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.5e-25 Score=256.09 Aligned_cols=266 Identities=23% Similarity=0.416 Sum_probs=232.6
Q ss_pred CCCeEEcccCCCceEEeecCCCCCCCCccccccccCCCeeeeEEEE-ecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEe
Q 003236 505 MDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQL-IPASTSKVESCHFSPDGKLLATGGHDKKAVLWC 583 (837)
Q Consensus 505 ~~~~v~~Gs~D~~v~~w~s~~~~~~~~~~~~~~~~~~g~~~~~~~~-l~~H~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd 583 (837)
++.++.+|+.|.++++|..... ..+.+ +.+|.+.|.+++|..-+.+|++|+.|.+++|||
T Consensus 217 ~~~~~~~~s~~~tl~~~~~~~~-------------------~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd 277 (537)
T KOG0274|consen 217 HDGFFKSGSDDSTLHLWDLNNG-------------------YLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWD 277 (537)
T ss_pred ecCeEEecCCCceeEEeecccc-------------------eEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEe
Confidence 3678899999999988844332 33455 899999999999998788999999999999999
Q ss_pred CCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeEEeeccccceEEEEEcCCCCeEEEEEeCCC
Q 003236 584 TESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNS 663 (837)
Q Consensus 584 ~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg 663 (837)
+.++.+..++.+|.+.|.++...+ .++++|+.|.+|++|++.++. .+..+.+|...|.++.++ ..++++|+.|+
T Consensus 278 ~~sg~C~~~l~gh~stv~~~~~~~--~~~~sgs~D~tVkVW~v~n~~-~l~l~~~h~~~V~~v~~~---~~~lvsgs~d~ 351 (537)
T KOG0274|consen 278 CSTGECTHSLQGHTSSVRCLTIDP--FLLVSGSRDNTVKVWDVTNGA-CLNLLRGHTGPVNCVQLD---EPLLVSGSYDG 351 (537)
T ss_pred cCCCcEEEEecCCCceEEEEEccC--ceEeeccCCceEEEEeccCcc-eEEEeccccccEEEEEec---CCEEEEEecCc
Confidence 999999999999999999998864 478889999999999999766 488888899999999998 44788999999
Q ss_pred cEEEEECCCCeeeeEEec-CCCeeEEEEecCCCEEEEEEcCCeEEEEECCCC-eEEEEEcCCCCCEEEEEEcCCCCEEEE
Q 003236 664 EIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAIENYISILDVETQ-VCRLKLQGHKNQVHSVCWNTSGEYLAS 741 (837)
Q Consensus 664 ~I~vwDl~t~~~i~~~~~-~~~i~sl~~sp~g~~llags~dg~I~iwDl~s~-~~~~~l~~h~~~V~sl~~spdg~~Las 741 (837)
+|++||+.+++++..+.. ...|.++.+... ..++.|+.|+.|++||+++. +++..+.+|..-|.++.+ .+++|++
T Consensus 352 ~v~VW~~~~~~cl~sl~gH~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~~v~~l~~--~~~~Lvs 428 (537)
T KOG0274|consen 352 TVKVWDPRTGKCLKSLSGHTGRVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKRKCIHTLQGHTSLVSSLLL--RDNFLVS 428 (537)
T ss_pred eEEEEEhhhceeeeeecCCcceEEEEEecCc-ceEEeeeeccceEeecCCchhhhhhhhcCCccccccccc--ccceeEe
Confidence 999999999999999986 456888877765 89999999999999999999 999999999998876655 5788998
Q ss_pred Ee-CCeEEEEEcCCCCCceeEEEeec-CCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE
Q 003236 742 VS-DELVRVWSIGSGSKGECIHELSC-TGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL 803 (837)
Q Consensus 742 gs-Dg~I~IwDl~s~~~~~~i~~~~~-~~~~I~sv~fspdg~~L~sgs~dg~I~IwDl~s~~~~ 803 (837)
++ |++|++||..++ .++..+.+ +...|..+++. ...+++++.++.+++||++++...
T Consensus 429 ~~aD~~Ik~WD~~~~---~~~~~~~~~~~~~v~~l~~~--~~~il~s~~~~~~~l~dl~~~~~~ 487 (537)
T KOG0274|consen 429 SSADGTIKLWDAEEG---ECLRTLEGRHVGGVSALALG--KEEILCSSDDGSVKLWDLRSGTLI 487 (537)
T ss_pred ccccccEEEeecccC---ceeeeeccCCcccEEEeecC--cceEEEEecCCeeEEEecccCchh
Confidence 88 999999999988 78888887 56778877776 467999999999999999999877
|
|
| >KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.6e-26 Score=254.40 Aligned_cols=275 Identities=23% Similarity=0.417 Sum_probs=235.4
Q ss_pred EEEEc-CCCCEEEEEECCCcEEEEeCCCCe------EEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCC-c
Q 003236 560 SCHFS-PDGKLLATGGHDKKAVLWCTESFT------VKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPD-Y 631 (837)
Q Consensus 560 sl~fS-pdg~~Lasgs~Dg~I~VWd~~t~~------~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~~~-~ 631 (837)
.+..+ |.++||++||+||.|++|+..... .+..++.|.++|++++...+++.|+++|.|-+|++|+..... .
T Consensus 29 ~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~~ 108 (735)
T KOG0308|consen 29 ALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDNTF 108 (735)
T ss_pred hccccCCCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCcch
Confidence 34444 367789999999999999875322 367788999999999999999999999999999999998764 6
Q ss_pred eeEEeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCe--eeeEEe----------cCCCeeEEEEecCCCEEEE
Q 003236 632 SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS--CAGVFK----------CQSGATQMRFQPRLGRILA 699 (837)
Q Consensus 632 ~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~--~i~~~~----------~~~~i~sl~~sp~g~~lla 699 (837)
+..++..|...|.|+++-.....++++|+-|+.|.+||++++. .+..+. ....|++++..+.+..|+.
T Consensus 109 c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ivs 188 (735)
T KOG0308|consen 109 CMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIVS 188 (735)
T ss_pred hHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcceEEEe
Confidence 7888999999999999954456799999999999999999873 232222 2346899999999988999
Q ss_pred EEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeC
Q 003236 700 AAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHP 778 (837)
Q Consensus 700 gs~dg~I~iwDl~s~~~~~~l~~h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fsp 778 (837)
|+.++.|++||.++.+.+..+.+|...|.++..++||..+++++ ||+|++||+.-. .|+.++..|...++++..+|
T Consensus 189 Ggtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQ---rCl~T~~vH~e~VWaL~~~~ 265 (735)
T KOG0308|consen 189 GGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQ---RCLATYIVHKEGVWALQSSP 265 (735)
T ss_pred cCcccceEEeccccccceeeeeccccceEEEEEcCCCCeEeecCCCceEEeeecccc---ceeeeEEeccCceEEEeeCC
Confidence 99999999999999999999999999999999999999999988 999999999877 89999999999999999999
Q ss_pred CCCEEEEEEcCCeEEEEECCCC-cEEEeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 003236 779 TFPSLLVIGCYETLELWNMTEN-KTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 837 (837)
Q Consensus 779 dg~~L~sgs~dg~I~IwDl~s~-~~~~l~~h~~~V~sla~spdg~~LaSgs~DG~I~IWd 837 (837)
+..++++|+.|+.|+.-|+.+. +...+...+.+|..+..+.+..-+-+++.|+.|+-|.
T Consensus 266 sf~~vYsG~rd~~i~~Tdl~n~~~~tlick~daPv~~l~~~~~~~~~WvtTtds~I~rW~ 325 (735)
T KOG0308|consen 266 SFTHVYSGGRDGNIYRTDLRNPAKSTLICKEDAPVLKLHLHEHDNSVWVTTTDSSIKRWK 325 (735)
T ss_pred CcceEEecCCCCcEEecccCCchhheEeecCCCchhhhhhccccCCceeeeccccceecC
Confidence 9999999999999999999984 4445556677888888776555556777888898884
|
|
| >KOG1407 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.3e-25 Score=223.95 Aligned_cols=241 Identities=24% Similarity=0.362 Sum_probs=216.3
Q ss_pred EEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCce-eEEeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEE
Q 003236 591 STLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYS-LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWS 669 (837)
Q Consensus 591 ~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~~~~~-~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwD 669 (837)
+.+.+|...|.+|+|+.+|..|++|+.|+++.+|+++..... -....+|.+.|-.++|+|....+|++++.|.+|++||
T Consensus 14 r~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd 93 (313)
T KOG1407|consen 14 RELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWD 93 (313)
T ss_pred HHhhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEE
Confidence 456689999999999999999999999999999999875432 2456789999999999999999999999999999999
Q ss_pred CCCCeeeeEEecCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEe-CCeEE
Q 003236 670 INNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVR 748 (837)
Q Consensus 670 l~t~~~i~~~~~~~~i~sl~~sp~g~~llags~dg~I~iwDl~s~~~~~~l~~h~~~V~sl~~spdg~~Lasgs-Dg~I~ 748 (837)
++.++++..+....+-..+.|+|+|++++++..|..|.++|.++.+.+.... ....+..++|+.++.+++... .|+|.
T Consensus 94 ~r~~k~~~~i~~~~eni~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~-~~~e~ne~~w~~~nd~Fflt~GlG~v~ 172 (313)
T KOG1407|consen 94 IRSGKCTARIETKGENINITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQ-FKFEVNEISWNNSNDLFFLTNGLGCVE 172 (313)
T ss_pred eccCcEEEEeeccCcceEEEEcCCCCEEEEecCcccEEEEEecccceeehhc-ccceeeeeeecCCCCEEEEecCCceEE
Confidence 9999999999988888899999999999999999999999999988776655 556788899998777776666 79999
Q ss_pred EEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE-EeccCCCCeeEEEEeCCCCEEEEE
Q 003236 749 VWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASA 827 (837)
Q Consensus 749 IwDl~s~~~~~~i~~~~~~~~~I~sv~fspdg~~L~sgs~dg~I~IwDl~s~~~~-~l~~h~~~V~sla~spdg~~LaSg 827 (837)
|...... +.+..+..|.....++.|+|+|++|++|+.|..+.+||+...-++ .+..++-+|..|.|+.||++||+|
T Consensus 173 ILsypsL---kpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~isRldwpVRTlSFS~dg~~lASa 249 (313)
T KOG1407|consen 173 ILSYPSL---KPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDELICERCISRLDWPVRTLSFSHDGRMLASA 249 (313)
T ss_pred EEecccc---ccccccccCCcceEEEEECCCCceEeeccccceeeccChhHhhhheeeccccCceEEEEeccCcceeecc
Confidence 9998765 788999999999999999999999999999999999999988777 677899999999999999999999
Q ss_pred ECCCcEEE
Q 003236 828 SHDKCVKI 835 (837)
Q Consensus 828 s~DG~I~I 835 (837)
++|..|-|
T Consensus 250 SEDh~IDI 257 (313)
T KOG1407|consen 250 SEDHFIDI 257 (313)
T ss_pred CccceEEe
Confidence 99988765
|
|
| >KOG0288 consensus WD40 repeat protein TipD [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.1e-26 Score=240.84 Aligned_cols=266 Identities=21% Similarity=0.350 Sum_probs=227.6
Q ss_pred CCCeEEcccCCCceEEeecCCCCCCCCccccccccCCCeeeeEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEeC
Q 003236 505 MDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCT 584 (837)
Q Consensus 505 ~~~~v~~Gs~D~~v~~w~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~H~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~ 584 (837)
....+++|+.|..|++|..... ....+.++.+..+.|+++.|.++++++++++.|+.+++|++
T Consensus 186 ~sdtlatgg~Dr~Ik~W~v~~~-----------------k~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wnv 248 (459)
T KOG0288|consen 186 NSDTLATGGSDRIIKLWNVLGE-----------------KSELISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRLWNV 248 (459)
T ss_pred Ccchhhhcchhhhhhhhhcccc-----------------hhhhhhhhhccCCCcceeeecCCCceEEeecCCCceeeeec
Confidence 3356789999999999955433 13346778888999999999999999999999999999999
Q ss_pred CCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeEEeeccccceEEEEEcCCCCeEEEEEeCCCc
Q 003236 585 ESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSE 664 (837)
Q Consensus 585 ~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~ 664 (837)
...+...++.+|.+.|+++.|......+++|+.|.+|++||+.... +.+++. ....+..|+.. ...+++|-.|+.
T Consensus 249 d~~r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~-C~kt~l-~~S~cnDI~~~---~~~~~SgH~Dkk 323 (459)
T KOG0288|consen 249 DSLRLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAY-CSKTVL-PGSQCNDIVCS---ISDVISGHFDKK 323 (459)
T ss_pred cchhhhhhhcccccceeeehhhccccceeeccccchhhhhhhhhhh-eecccc-ccccccceEec---ceeeeecccccc
Confidence 9999999999999999999999877779999999999999999744 344433 23456666665 346779999999
Q ss_pred EEEEECCCCeeeeEEecCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEcC----CCCCEEEEEEcCCCCEEE
Q 003236 665 IRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQG----HKNQVHSVCWNTSGEYLA 740 (837)
Q Consensus 665 I~vwDl~t~~~i~~~~~~~~i~sl~~sp~g~~llags~dg~I~iwDl~s~~~~~~l~~----h~~~V~sl~~spdg~~La 740 (837)
|++||+++..+.......+.|+++..++++..+++++.|..+.++|+++......+.. .....+.++|||++.|++
T Consensus 324 vRfwD~Rs~~~~~sv~~gg~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~Yva 403 (459)
T KOG0288|consen 324 VRFWDIRSADKTRSVPLGGRVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVA 403 (459)
T ss_pred eEEEeccCCceeeEeecCcceeeEeeccCCeEEeeecCCCceeeeecccccEEEEeeccccccccccceeEECCCCceee
Confidence 9999999999999999999999999999999999999999999999999887777653 223588899999999999
Q ss_pred EEe-CCeEEEEEcCCCCCceeEEEeecCCC--ceEEEEEeCCCCEEEEEEcCCeEEEE
Q 003236 741 SVS-DELVRVWSIGSGSKGECIHELSCTGN--KFHSCVFHPTFPSLLVIGCYETLELW 795 (837)
Q Consensus 741 sgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~--~I~sv~fspdg~~L~sgs~dg~I~Iw 795 (837)
+|+ ||.|+||++.++ ++...+..... .|++++|+|.|..+++++.++.+.+|
T Consensus 404 AGS~dgsv~iW~v~tg---KlE~~l~~s~s~~aI~s~~W~~sG~~Llsadk~~~v~lW 458 (459)
T KOG0288|consen 404 AGSADGSVYIWSVFTG---KLEKVLSLSTSNAAITSLSWNPSGSGLLSADKQKAVTLW 458 (459)
T ss_pred eccCCCcEEEEEccCc---eEEEEeccCCCCcceEEEEEcCCCchhhcccCCcceEec
Confidence 999 999999999998 55555544443 59999999999999999999999998
|
|
| >KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription] | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.7e-25 Score=257.22 Aligned_cols=288 Identities=20% Similarity=0.296 Sum_probs=232.1
Q ss_pred ccCCCeEEccc--CCCceEEeecCCCCCCCCccccccccCCCeeeeEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEE
Q 003236 503 TDMDRFVDDGS--LDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAV 580 (837)
Q Consensus 503 ~~~~~~v~~Gs--~D~~v~~w~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~H~~~V~sl~fSpdg~~Lasgs~Dg~I~ 580 (837)
.+....+++|+ .|+.+++|....-.+ +.... .-..-..+.+...|.+.|+|+.|++||++||+|++|+.|.
T Consensus 22 ~pdg~~~aTgGq~~d~~~~iW~~~~vl~--~~~~~-----~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD~~v~ 94 (942)
T KOG0973|consen 22 HPDGVKFATGGQVLDGGIVIWSQDPVLD--EKEEK-----NENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGSDDRLVM 94 (942)
T ss_pred cCCceeEecCCccccccceeeccccccc--hhhhh-----hcccchhheeeccccCceeEEEECCCCCeEeeccCcceEE
Confidence 34445678888 999999994322110 00000 0012235677889999999999999999999999999999
Q ss_pred EEeCC------------------CCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeEEeeccccc
Q 003236 581 LWCTE------------------SFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTT 642 (837)
Q Consensus 581 VWd~~------------------t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~~~~~~~~~~~h~~~ 642 (837)
||... ..+.+..+.+|...|.+++|+|++.+|++++.|++|.|||..+. ..+..+.+|.+.
T Consensus 95 iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF-~~~~vl~~H~s~ 173 (942)
T KOG0973|consen 95 IWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTF-ELLKVLRGHQSL 173 (942)
T ss_pred EeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEecccceEEEEccccc-eeeeeeeccccc
Confidence 99765 23567888999999999999999999999999999999999997 568999999999
Q ss_pred eEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeeEEec-------CCCeeEEEEecCCCEEEEEEc----CCeEEEEEC
Q 003236 643 VMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-------QSGATQMRFQPRLGRILAAAI----ENYISILDV 711 (837)
Q Consensus 643 V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~-------~~~i~sl~~sp~g~~llags~----dg~I~iwDl 711 (837)
|..+.|+|-|. +||+-+.|++|+||++.+..+.+.+.. ...+..+.|+|||.+|++... ...+.|++-
T Consensus 174 VKGvs~DP~Gk-y~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR 252 (942)
T KOG0973|consen 174 VKGVSWDPIGK-YFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIER 252 (942)
T ss_pred ccceEECCccC-eeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchhhccCCcceeEEEec
Confidence 99999999987 677999999999999887766666653 234778999999999998764 247899999
Q ss_pred CCCeEEEEEcCCCCCEEEEEEcCC------C-------C----EEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEE
Q 003236 712 ETQVCRLKLQGHKNQVHSVCWNTS------G-------E----YLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHS 773 (837)
Q Consensus 712 ~s~~~~~~l~~h~~~V~sl~~spd------g-------~----~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~s 773 (837)
.+.+.-..+-+|..++.++.|+|. . . .+|+|+ |++|.||..........+ .......|.+
T Consensus 253 ~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~vi--~~lf~~SI~D 330 (942)
T KOG0973|consen 253 GTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPLFVI--HNLFNKSIVD 330 (942)
T ss_pred CCceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCCchhhh--hhhhcCceee
Confidence 999999999999999999999981 1 1 566677 999999998665332222 2334678999
Q ss_pred EEEeCCCCEEEEEEcCCeEEEEECCCCc
Q 003236 774 CVFHPTFPSLLVIGCYETLELWNMTENK 801 (837)
Q Consensus 774 v~fspdg~~L~sgs~dg~I~IwDl~s~~ 801 (837)
++|+|||..|++++.||+|.++.++..+
T Consensus 331 msWspdG~~LfacS~DGtV~~i~Fee~E 358 (942)
T KOG0973|consen 331 MSWSPDGFSLFACSLDGTVALIHFEEKE 358 (942)
T ss_pred eeEcCCCCeEEEEecCCeEEEEEcchHH
Confidence 9999999999999999999999987643
|
|
| >KOG0641 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.2e-23 Score=205.44 Aligned_cols=295 Identities=18% Similarity=0.264 Sum_probs=237.3
Q ss_pred ccCCCccccCCCeEEcccCCCceEEeecCCCCCCCCccccccccCCCeeeeEEEEecCCCCCeEEEEEcCCCCEEEEEEC
Q 003236 496 TSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGH 575 (837)
Q Consensus 496 ~~~~~~l~~~~~~v~~Gs~D~~v~~w~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~H~~~V~sl~fSpdg~~Lasgs~ 575 (837)
++....+.+...+.++|+...+.++...++-.+.+.. .+..+..+......-+.|.+.|+|.+|+|+|.+||+|+.
T Consensus 34 airav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~----hea~~~pp~v~~kr~khhkgsiyc~~ws~~geliatgsn 109 (350)
T KOG0641|consen 34 AIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHA----HEAAKQPPSVLCKRNKHHKGSIYCTAWSPCGELIATGSN 109 (350)
T ss_pred heeeEEecCCCceEEeccCCceEEEEccccccCcccc----cccccCCCeEEeeeccccCccEEEEEecCccCeEEecCC
Confidence 4445566777789999999999998865554433221 122233333445556789999999999999999999999
Q ss_pred CCcEEEEeCCCCeE-----EEEeccCCCCeEEEEEcCC----CCEEEEEe-CCCeEEEEEcCCCCceeEEeeccccceEE
Q 003236 576 DKKAVLWCTESFTV-----KSTLEEHTQWITDVRFSPS----LSRLATSS-ADRTVRVWDTENPDYSLRTFTGHSTTVMS 645 (837)
Q Consensus 576 Dg~I~VWd~~t~~~-----~~~l~~h~~~I~~l~fspd----g~~Latgs-~Dg~I~IWDl~~~~~~~~~~~~h~~~V~s 645 (837)
|++|++.-.....+ ...+.-|.+.|.+++|..+ +.+|++++ .|..|++-|...+. .+..+.+|++.|.+
T Consensus 110 dk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~-~~~a~sghtghila 188 (350)
T KOG0641|consen 110 DKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQ-GFHALSGHTGHILA 188 (350)
T ss_pred CceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCC-cceeecCCcccEEE
Confidence 99999875443222 2456679999999999764 45667655 37778888887765 48899999999988
Q ss_pred EE-EcCCCCeEEEEEeCCCcEEEEECCCCeeeeEEec--------CCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeE
Q 003236 646 LD-FHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC--------QSGATQMRFQPRLGRILAAAIENYISILDVETQVC 716 (837)
Q Consensus 646 l~-fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~--------~~~i~sl~~sp~g~~llags~dg~I~iwDl~s~~~ 716 (837)
+- |+ ..++++|+.|.+|++||++-..++.++.. .+.|..+++.|.|+.+++|-.|....+||++.+..
T Consensus 189 lyswn---~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~dssc~lydirg~r~ 265 (350)
T KOG0641|consen 189 LYSWN---GAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADSSCMLYDIRGGRM 265 (350)
T ss_pred EEEec---CcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeeccCCCceEEEEeeCCce
Confidence 74 44 56899999999999999999999887763 24588999999999999999999999999999999
Q ss_pred EEEEcCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCC-ceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEE
Q 003236 717 RLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSK-GECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLEL 794 (837)
Q Consensus 717 ~~~l~~h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~-~~~i~~~~~~~~~I~sv~fspdg~~L~sgs~dg~I~I 794 (837)
+..+..|...|.|+.|+|...|+++|+ |..|++-|+...-. .-.+.....|...+..|.|+|..-.+++.+.|.++.+
T Consensus 266 iq~f~phsadir~vrfsp~a~yllt~syd~~ikltdlqgdla~el~~~vv~ehkdk~i~~rwh~~d~sfisssadkt~tl 345 (350)
T KOG0641|consen 266 IQRFHPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDLAHELPIMVVAEHKDKAIQCRWHPQDFSFISSSADKTATL 345 (350)
T ss_pred eeeeCCCccceeEEEeCCCceEEEEecccceEEEeecccchhhcCceEEEEeccCceEEEEecCccceeeeccCcceEEE
Confidence 999999999999999999999999999 99999999875321 1345556678899999999999988999999999999
Q ss_pred EECC
Q 003236 795 WNMT 798 (837)
Q Consensus 795 wDl~ 798 (837)
|-+.
T Consensus 346 wa~~ 349 (350)
T KOG0641|consen 346 WALN 349 (350)
T ss_pred eccC
Confidence 9764
|
|
| >KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.94 E-value=2e-25 Score=221.80 Aligned_cols=251 Identities=20% Similarity=0.307 Sum_probs=209.1
Q ss_pred eeeeEEEEecCCCCCeEEEEEcCCC-CEEEEEECCCcEEEEeCC-CCeEEEEeccCCCCeEEEEEcC-CCCEEEEEeCCC
Q 003236 543 FTFTEFQLIPASTSKVESCHFSPDG-KLLATGGHDKKAVLWCTE-SFTVKSTLEEHTQWITDVRFSP-SLSRLATSSADR 619 (837)
Q Consensus 543 ~~~~~~~~l~~H~~~V~sl~fSpdg-~~Lasgs~Dg~I~VWd~~-t~~~~~~l~~h~~~I~~l~fsp-dg~~Latgs~Dg 619 (837)
..+.+...+.. .+.+..|+|+++. ..+++++.||+++|||+. ...++..++.|...|.++.|++ ++..++++|.|+
T Consensus 49 ~gi~e~~s~d~-~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~ 127 (311)
T KOG0277|consen 49 KGIQECQSYDT-EDGLFDVAWSENHENQVIAASGDGSLRLFDLTMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDG 127 (311)
T ss_pred CCeEEEEeeec-ccceeEeeecCCCcceEEEEecCceEEEeccCCCCcchhHHHhhhhheEEeccccccceeEEeeccCC
Confidence 33445555543 4459999999954 478889999999999965 3567889999999999999998 466788899999
Q ss_pred eEEEEEcCCCCceeEEeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCC-CeeeeEEecCCCeeEEEEecC-CCEE
Q 003236 620 TVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN-GSCAGVFKCQSGATQMRFQPR-LGRI 697 (837)
Q Consensus 620 ~I~IWDl~~~~~~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t-~~~i~~~~~~~~i~sl~~sp~-g~~l 697 (837)
+|++|+...+. .+.++.+|...|....|+|....++++++.|+.+++||++. |+......+...+.|+.|+.- .+.+
T Consensus 128 TiKLW~~~r~~-Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl 206 (311)
T KOG0277|consen 128 TIKLWDPNRPN-SVQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHNVL 206 (311)
T ss_pred ceEeecCCCCc-ceEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeEEEeccceeEeecccccCCcEE
Confidence 99999998765 48899999999999999999999999999999999999986 444443334558999999874 4567
Q ss_pred EEEEcCCeEEEEECCCC-eEEEEEcCCCCCEEEEEEcCCC-CEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEE
Q 003236 698 LAAAIENYISILDVETQ-VCRLKLQGHKNQVHSVCWNTSG-EYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSC 774 (837)
Q Consensus 698 lags~dg~I~iwDl~s~-~~~~~l~~h~~~V~sl~~spdg-~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv 774 (837)
++++.|+.|++||++.- .++.++.+|.-.|+.|.|+|.. .+|++++ |-+++|||..... .++.+...|..-+..+
T Consensus 207 ~Tg~vd~~vr~wDir~~r~pl~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~d--s~~e~~~~HtEFv~g~ 284 (311)
T KOG0277|consen 207 ATGGVDNLVRGWDIRNLRTPLFELNGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQD--SAIETVDHHTEFVCGL 284 (311)
T ss_pred EecCCCceEEEEehhhccccceeecCCceEEEEEecCcchhhHhhhccccceEEecccccch--hhhhhhhccceEEecc
Confidence 78889999999999975 6788999999999999999964 6788888 9999999997553 4566667788888888
Q ss_pred EEeC-CCCEEEEEEcCCeEEEEEC
Q 003236 775 VFHP-TFPSLLVIGCYETLELWNM 797 (837)
Q Consensus 775 ~fsp-dg~~L~sgs~dg~I~IwDl 797 (837)
.|++ +...++.++.|+.++||+.
T Consensus 285 Dws~~~~~~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 285 DWSLFDPGQVASTGWDELLYVWNP 308 (311)
T ss_pred ccccccCceeeecccccceeeecc
Confidence 8887 4567899999999999984
|
|
| >PTZ00421 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=9.1e-24 Score=242.73 Aligned_cols=245 Identities=18% Similarity=0.268 Sum_probs=190.8
Q ss_pred EEecCCCCCeEEEEEcC-CCCEEEEEECCCcEEEEeCCCC-------eEEEEeccCCCCeEEEEEcCCC-CEEEEEeCCC
Q 003236 549 QLIPASTSKVESCHFSP-DGKLLATGGHDKKAVLWCTESF-------TVKSTLEEHTQWITDVRFSPSL-SRLATSSADR 619 (837)
Q Consensus 549 ~~l~~H~~~V~sl~fSp-dg~~Lasgs~Dg~I~VWd~~t~-------~~~~~l~~h~~~I~~l~fspdg-~~Latgs~Dg 619 (837)
..+.+|.+.|++++|+| ++.+||+|+.|++|+|||+.+. ..+..+.+|...|.+|+|+|++ .+|++++.|+
T Consensus 69 ~~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~Dg 148 (493)
T PTZ00421 69 PILLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADM 148 (493)
T ss_pred ceEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCC
Confidence 45789999999999999 8899999999999999999764 3567788999999999999975 6999999999
Q ss_pred eEEEEEcCCCCceeEEeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeeEEecCCC--eeEEEEecCCCEE
Q 003236 620 TVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSG--ATQMRFQPRLGRI 697 (837)
Q Consensus 620 ~I~IWDl~~~~~~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~~~~--i~sl~~sp~g~~l 697 (837)
+|+|||+.++. .+..+.+|...|.+++|+|++. +|++++.|+.|++||+++++.+..+..+.. +..+.|.++++.+
T Consensus 149 tVrIWDl~tg~-~~~~l~~h~~~V~sla~spdG~-lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~i 226 (493)
T PTZ00421 149 VVNVWDVERGK-AVEVIKCHSDQITSLEWNLDGS-LLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLI 226 (493)
T ss_pred EEEEEECCCCe-EEEEEcCCCCceEEEEEECCCC-EEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeE
Confidence 99999999865 4677888999999999999976 677999999999999999998887765433 4567889988888
Q ss_pred EEEE----cCCeEEEEECCCCe-EEEEEcC-CCCCEEEEEEcCCCCEEEEEe--CCeEEEEEcCCCCCceeEEEeec-CC
Q 003236 698 LAAA----IENYISILDVETQV-CRLKLQG-HKNQVHSVCWNTSGEYLASVS--DELVRVWSIGSGSKGECIHELSC-TG 768 (837)
Q Consensus 698 lags----~dg~I~iwDl~s~~-~~~~l~~-h~~~V~sl~~spdg~~Lasgs--Dg~I~IwDl~s~~~~~~i~~~~~-~~ 768 (837)
++++ .|+.|++||+++.. ++..+.. +...+....|++++.+|++++ |+.|++||+.++. .+..... +.
T Consensus 227 vt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~---~~~~~~~~s~ 303 (493)
T PTZ00421 227 ITLGCSKSQQRQIMLWDTRKMASPYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNER---LTFCSSYSSV 303 (493)
T ss_pred EEEecCCCCCCeEEEEeCCCCCCceeEeccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCc---eEEEeeccCC
Confidence 8765 36899999998753 3433332 334566678999999888775 8999999999873 3333322 34
Q ss_pred CceEEEEEeCCCCEEEEEEcCCeEEEEECCCC
Q 003236 769 NKFHSCVFHPTFPSLLVIGCYETLELWNMTEN 800 (837)
Q Consensus 769 ~~I~sv~fspdg~~L~sgs~dg~I~IwDl~s~ 800 (837)
..+..++|.|... +-...-...++|.+...
T Consensus 304 ~~~~g~~~~pk~~--~dv~~~Ei~r~~~l~~~ 333 (493)
T PTZ00421 304 EPHKGLCMMPKWS--LDTRKCEIARFYALTYH 333 (493)
T ss_pred CCCcceEeccccc--ccccceeeeEEEEecCC
Confidence 5677888888632 21222224455555443
|
|
| >KOG1408 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.94 E-value=6.7e-25 Score=242.32 Aligned_cols=302 Identities=15% Similarity=0.203 Sum_probs=240.2
Q ss_pred cccccCCCeeeeEEEEecCCCCCeEEEEEcCC-----------CCEEEEEECCCcEEEEeCCCCe---EEE---------
Q 003236 535 RSAEVGKGFTFTEFQLIPASTSKVESCHFSPD-----------GKLLATGGHDKKAVLWCTESFT---VKS--------- 591 (837)
Q Consensus 535 ~~~~~~~g~~~~~~~~l~~H~~~V~sl~fSpd-----------g~~Lasgs~Dg~I~VWd~~t~~---~~~--------- 591 (837)
.+|++.+.........+--|...|+.|.--|- ...++|++.|++|++||++.+. ..+
T Consensus 349 YvWDvrD~~kvgk~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRlW~l~~ctnn~vyrRNils~~l~ 428 (1080)
T KOG1408|consen 349 YVWDVRDVNKVGKCSSMLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRLWDLAFCTNNQVYRRNILSANLS 428 (1080)
T ss_pred EEEeccccccccceeeeeeccceeeeeccccccccCcccccCCccceeEecCCCcEEEeecccccccceeecccchhhhh
Confidence 55777777777777777788888888876551 2358999999999999987521 110
Q ss_pred -Ee------------------------ccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeEEeeccccceEEE
Q 003236 592 -TL------------------------EEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSL 646 (837)
Q Consensus 592 -~l------------------------~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~sl 646 (837)
.. -.....|.+++.+|++.+||+|..-|+|+||++.+-+. ......|...|.|+
T Consensus 429 ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~-~~~~eAHesEilcL 507 (1080)
T KOG1408|consen 429 KIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQELEY-TCFMEAHESEILCL 507 (1080)
T ss_pred cCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCcceecccCccCceEEEEehhhhh-hhheecccceeEEE
Confidence 00 02334689999999999999999999999999987664 67778899999999
Q ss_pred EEcCC--CCeEEEEEeCCCcEEEEECCC-CeeeeEEec-CCCeeEEEEecCC--CEEEEEEcCCeEEEEECCCCeEEEEE
Q 003236 647 DFHPS--KEDLLCSCDNNSEIRYWSINN-GSCAGVFKC-QSGATQMRFQPRL--GRILAAAIENYISILDVETQVCRLKL 720 (837)
Q Consensus 647 ~fspd--g~~llasgs~Dg~I~vwDl~t-~~~i~~~~~-~~~i~sl~~sp~g--~~llags~dg~I~iwDl~s~~~~~~l 720 (837)
.|+.. +..+|++++.|..|.|||+.. ...+.++.. ...|+++.|...| ...++++.|..|.+--..+......+
T Consensus 508 eyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f 587 (1080)
T KOG1408|consen 508 EYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLF 587 (1080)
T ss_pred eecCchhhhHhhhhccCCceEEEEecccccchhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCceec
Confidence 99843 456899999999999999964 455556654 5679999998877 56788888887765433322112222
Q ss_pred cC-----CCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEE
Q 003236 721 QG-----HKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLEL 794 (837)
Q Consensus 721 ~~-----h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fspdg~~L~sgs~dg~I~I 794 (837)
.. ....++.++..|..++++++. |..|+|||+.+++..+.++--..|.+....+...|.|.||++.+.|.+|.+
T Consensus 588 ~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~ 667 (1080)
T KOG1408|consen 588 PRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCF 667 (1080)
T ss_pred cccccccccceEEEeeeCCCcceEEEEecccceEEEeccccceeeeecccccCCCceEEEEECCCccEEEEeecCCceEE
Confidence 22 234688999999999999998 999999999999544444444456788899999999999999999999999
Q ss_pred EECCCCcEE-EeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 003236 795 WNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 837 (837)
Q Consensus 795 wDl~s~~~~-~l~~h~~~V~sla~spdg~~LaSgs~DG~I~IWd 837 (837)
||..+++++ ...+|...|+.+.|.+|.+.|++++.||.|.||+
T Consensus 668 ~Df~sgEcvA~m~GHsE~VTG~kF~nDCkHlISvsgDgCIFvW~ 711 (1080)
T KOG1408|consen 668 VDFVSGECVAQMTGHSEAVTGVKFLNDCKHLISVSGDGCIFVWK 711 (1080)
T ss_pred EEeccchhhhhhcCcchheeeeeecccchhheeecCCceEEEEE
Confidence 999999999 7889999999999999999999999999999995
|
|
| >KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.3e-24 Score=220.15 Aligned_cols=268 Identities=19% Similarity=0.266 Sum_probs=221.4
Q ss_pred CCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeE
Q 003236 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLR 634 (837)
Q Consensus 555 ~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~~~~~~~ 634 (837)
.+.|++|.|+|.+..|++++.||.+++||+........+ .|..++.+++|.+ ...+++|+.||.|+++|+.++. ..
T Consensus 13 ~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~-~~~~plL~c~F~d-~~~~~~G~~dg~vr~~Dln~~~--~~ 88 (323)
T KOG1036|consen 13 EDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKF-KHGAPLLDCAFAD-ESTIVTGGLDGQVRRYDLNTGN--ED 88 (323)
T ss_pred hhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhhhe-ecCCceeeeeccC-CceEEEeccCceEEEEEecCCc--ce
Confidence 567999999999889999999999999999987666666 4899999999987 4679999999999999999876 46
Q ss_pred EeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeeEEecCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCC
Q 003236 635 TFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQ 714 (837)
Q Consensus 635 ~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~~~~i~sl~~sp~g~~llags~dg~I~iwDl~s~ 714 (837)
.+..|...|.||.+++..+ .+++|+.|++|++||.+.......+.....|.++... ++.|++|+.+..|.+||+++.
T Consensus 89 ~igth~~~i~ci~~~~~~~-~vIsgsWD~~ik~wD~R~~~~~~~~d~~kkVy~~~v~--g~~LvVg~~~r~v~iyDLRn~ 165 (323)
T KOG1036|consen 89 QIGTHDEGIRCIEYSYEVG-CVISGSWDKTIKFWDPRNKVVVGTFDQGKKVYCMDVS--GNRLVVGTSDRKVLIYDLRNL 165 (323)
T ss_pred eeccCCCceEEEEeeccCC-eEEEcccCccEEEEeccccccccccccCceEEEEecc--CCEEEEeecCceEEEEEcccc
Confidence 6778999999999998755 5669999999999999987777777777778877665 578999999999999999987
Q ss_pred eEEEEEc--CCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCC-CceeEEEeecCC---------CceEEEEEeCCCC
Q 003236 715 VCRLKLQ--GHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGS-KGECIHELSCTG---------NKFHSCVFHPTFP 781 (837)
Q Consensus 715 ~~~~~l~--~h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~-~~~~i~~~~~~~---------~~I~sv~fspdg~ 781 (837)
....... ..+..++||++.|++.-+++++ ||.|.+=.++... .......|++|. .+|++++|+|-..
T Consensus 166 ~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~ 245 (323)
T KOG1036|consen 166 DEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHG 245 (323)
T ss_pred cchhhhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEeccccc
Confidence 5544222 2445789999999888788888 9988887766541 112233455543 4689999999999
Q ss_pred EEEEEEcCCeEEEEECCCCcEE-EeccCCCCeeEEEEeCCCCEEEEEEC
Q 003236 782 SLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASH 829 (837)
Q Consensus 782 ~L~sgs~dg~I~IwDl~s~~~~-~l~~h~~~V~sla~spdg~~LaSgs~ 829 (837)
.|++|++||.|.+||+.+.+.+ .+...+..|.+++|+.+|..||+|+.
T Consensus 246 tfaTgGsDG~V~~Wd~~~rKrl~q~~~~~~SI~slsfs~dG~~LAia~s 294 (323)
T KOG1036|consen 246 TFATGGSDGIVNIWDLFNRKRLKQLAKYETSISSLSFSMDGSLLAIASS 294 (323)
T ss_pred eEEecCCCceEEEccCcchhhhhhccCCCCceEEEEeccCCCeEEEEec
Confidence 9999999999999999998877 55566778999999999999999874
|
|
| >TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.4e-23 Score=224.54 Aligned_cols=264 Identities=13% Similarity=0.107 Sum_probs=208.0
Q ss_pred CCEEEEEECCCcEEEEeCCCCeEEEEeccCCCCeEEEEEcCCCCEE-EEEeCCCeEEEEEcCCCCceeEEeeccccceEE
Q 003236 567 GKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRL-ATSSADRTVRVWDTENPDYSLRTFTGHSTTVMS 645 (837)
Q Consensus 567 g~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~I~~l~fspdg~~L-atgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~s 645 (837)
+.++++++.|+.|++||+.+++.+..+..+. .+.+++|+|+++.+ ++++.++.|++||+.+++. ...+..+. .+..
T Consensus 1 ~~~~~s~~~d~~v~~~d~~t~~~~~~~~~~~-~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~-~~~~~~~~-~~~~ 77 (300)
T TIGR03866 1 EKAYVSNEKDNTISVIDTATLEVTRTFPVGQ-RPRGITLSKDGKLLYVCASDSDTIQVIDLATGEV-IGTLPSGP-DPEL 77 (300)
T ss_pred CcEEEEecCCCEEEEEECCCCceEEEEECCC-CCCceEECCCCCEEEEEECCCCeEEEEECCCCcE-EEeccCCC-CccE
Confidence 3578899999999999999999888887654 47789999999876 5667889999999987654 44444433 3567
Q ss_pred EEEcCCCCeEEEEEeCCCcEEEEECCCCeeeeEEecCCCeeEEEEecCCCEEEEEEcCC-eEEEEECCCCeEEEEEcCCC
Q 003236 646 LDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIEN-YISILDVETQVCRLKLQGHK 724 (837)
Q Consensus 646 l~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~~~~i~sl~~sp~g~~llags~dg-~I~iwDl~s~~~~~~l~~h~ 724 (837)
++|+|+++.++++++.++.|++||+.+.+.+..+.....+.+++|+|++..++++..++ .+.+||.++++....+. ..
T Consensus 78 ~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~-~~ 156 (300)
T TIGR03866 78 FALHPNGKILYIANEDDNLVTVIDIETRKVLAEIPVGVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNVL-VD 156 (300)
T ss_pred EEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeCCCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEEE-cC
Confidence 89999998787777778999999999988888877666678999999999999888765 57788999887765544 23
Q ss_pred CCEEEEEEcCCCCEEEEEe--CCeEEEEEcCCCCCceeEEEeecC-------CCceEEEEEeCCCCEEEEE-EcCCeEEE
Q 003236 725 NQVHSVCWNTSGEYLASVS--DELVRVWSIGSGSKGECIHELSCT-------GNKFHSCVFHPTFPSLLVI-GCYETLEL 794 (837)
Q Consensus 725 ~~V~sl~~spdg~~Lasgs--Dg~I~IwDl~s~~~~~~i~~~~~~-------~~~I~sv~fspdg~~L~sg-s~dg~I~I 794 (837)
..+.+++|++++.+|++++ ++.|++||+.++ +++..+..+ ......++|+|++++++++ +.++.|.+
T Consensus 157 ~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~---~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v 233 (300)
T TIGR03866 157 QRPRFAEFTADGKELWVSSEIGGTVSVIDVATR---KVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAV 233 (300)
T ss_pred CCccEEEECCCCCEEEEEcCCCCEEEEEEcCcc---eeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEE
Confidence 4567899999999886554 889999999987 343333221 1123568899999986665 45668999
Q ss_pred EECCCCcEEEeccCCCCeeEEEEeCCCCEEEEE-ECCCcEEEeC
Q 003236 795 WNMTENKTLTLSAHDKLVSSLAASTVNGMVASA-SHDKCVKIWK 837 (837)
Q Consensus 795 wDl~s~~~~~l~~h~~~V~sla~spdg~~LaSg-s~DG~I~IWd 837 (837)
||+.+++......+...+.+++|+|++++|+++ +.+|.|+|||
T Consensus 234 ~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d 277 (300)
T TIGR03866 234 VDAKTYEVLDYLLVGQRVWQLAFTPDEKYLLTTNGVSNDVSVID 277 (300)
T ss_pred EECCCCcEEEEEEeCCCcceEEECCCCCEEEEEcCCCCeEEEEE
Confidence 999998887554556689999999999999886 4689999997
|
Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol. |
| >KOG2096 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.3e-24 Score=219.95 Aligned_cols=285 Identities=19% Similarity=0.265 Sum_probs=214.0
Q ss_pred EEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEE--EEe--ccCCCCeEEEEEcCCCCEEEE-EeCCCeEE
Q 003236 548 FQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVK--STL--EEHTQWITDVRFSPSLSRLAT-SSADRTVR 622 (837)
Q Consensus 548 ~~~l~~H~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~~--~~l--~~h~~~I~~l~fspdg~~Lat-gs~Dg~I~ 622 (837)
+.+|++|.+.|+|++|+.||++||+++.|++|+||+++..... +.+ ...-+..+.++|.||-+-+++ +-...+++
T Consensus 79 ~~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g~~l~ 158 (420)
T KOG2096|consen 79 VSVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGNKLC 158 (420)
T ss_pred hhhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEccCCEEE
Confidence 4568899999999999999999999999999999998864321 111 112235688999999765554 44566899
Q ss_pred EEEcCCCC---cee--------EEeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeeEEec-CCCeeEEEE
Q 003236 623 VWDTENPD---YSL--------RTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRF 690 (837)
Q Consensus 623 IWDl~~~~---~~~--------~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~-~~~i~sl~~ 690 (837)
+|.+...+ ... .....|.-.|..+-... +..++++++.|..|.+|+++ |..+..+.. ...-+..+.
T Consensus 159 vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~-~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~~aav 236 (420)
T KOG2096|consen 159 VYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAG-NAKYIMSASLDTKICLWDLK-GQLLQSIDTNQSSNYDAAV 236 (420)
T ss_pred EEEeeecccCCCCcccccccccccchhcccceEEEeecC-CceEEEEecCCCcEEEEecC-Cceeeeeccccccccceee
Confidence 99875322 111 12233555566655554 45578899999999999999 888877765 344667889
Q ss_pred ecCCCEEEEEEcCCeEEEEECC---CC-----eEEEEEcCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCC----C
Q 003236 691 QPRLGRILAAAIENYISILDVE---TQ-----VCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGS----K 757 (837)
Q Consensus 691 sp~g~~llags~dg~I~iwDl~---s~-----~~~~~l~~h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~----~ 757 (837)
+|+|+++++++..-.|++|++- .| ..+..+++|.+.|+.++|+++...+++.+ ||+++|||++-.. .
T Consensus 237 SP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~~qD 316 (420)
T KOG2096|consen 237 SPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEAGQD 316 (420)
T ss_pred CCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEeeccceEecCCC
Confidence 9999999999999999999863 22 34677899999999999999999999999 9999999986321 1
Q ss_pred ceeEEEe----ecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE--EeccCCCCeeEEEEeCCCCEEEEEECCC
Q 003236 758 GECIHEL----SCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL--TLSAHDKLVSSLAASTVNGMVASASHDK 831 (837)
Q Consensus 758 ~~~i~~~----~~~~~~I~sv~fspdg~~L~sgs~dg~I~IwDl~s~~~~--~l~~h~~~V~sla~spdg~~LaSgs~DG 831 (837)
.+.+.+. ...+..-..+.++|+|..|+++ ....|.+|..++++.. ....|...|++|+|+++|++++||++ .
T Consensus 317 pk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s-~gs~l~~~~se~g~~~~~~e~~h~~~Is~is~~~~g~~~atcGd-r 394 (420)
T KOG2096|consen 317 PKILKEGSAPLHAAGSEPVRLELSPSGDSLAVS-FGSDLKVFASEDGKDYPELEDIHSTTISSISYSSDGKYIATCGD-R 394 (420)
T ss_pred chHhhcCCcchhhcCCCceEEEeCCCCcEEEee-cCCceEEEEcccCccchhHHHhhcCceeeEEecCCCcEEeeecc-e
Confidence 1222222 2233444589999999966554 4457999999998877 34589999999999999999999974 5
Q ss_pred cEEEe
Q 003236 832 CVKIW 836 (837)
Q Consensus 832 ~I~IW 836 (837)
.+++.
T Consensus 395 ~vrv~ 399 (420)
T KOG2096|consen 395 YVRVI 399 (420)
T ss_pred eeeee
Confidence 56654
|
|
| >KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.7e-24 Score=230.89 Aligned_cols=295 Identities=21% Similarity=0.288 Sum_probs=232.6
Q ss_pred cccCCCccccCCCeEEcccCCCceEEeecCCCCCCCCcccccc-ccCCCeeeeEEEEecCCCCCeEEEEEcCCCCEEEEE
Q 003236 495 LTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSA-EVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATG 573 (837)
Q Consensus 495 ~~~~~~~l~~~~~~v~~Gs~D~~v~~w~s~~~~~~~~~~~~~~-~~~~g~~~~~~~~l~~H~~~V~sl~fSpdg~~Lasg 573 (837)
+.+....+.+.+.++.+++.|++|--|....+.+.+....+.- ....+..+.+-. ++|...|.+++.|+||+|||+|
T Consensus 143 ~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r--~~h~keil~~avS~Dgkylatg 220 (479)
T KOG0299|consen 143 LSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESR--KGHVKEILTLAVSSDGKYLATG 220 (479)
T ss_pred CcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCccc--ccccceeEEEEEcCCCcEEEec
Confidence 3444445566678889999999999997766554333222210 001233333322 4999999999999999999999
Q ss_pred ECCCcEEEEeCCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeEEeeccccceEEEEEcCCCC
Q 003236 574 GHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKE 653 (837)
Q Consensus 574 s~Dg~I~VWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~sl~fspdg~ 653 (837)
+.|..|.||+..+.+.+..+.+|.+.|.+++|......|++++.|.+|++|+++...+ +.++.+|.+.|..|..... .
T Consensus 221 g~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~-vetlyGHqd~v~~IdaL~r-e 298 (479)
T KOG0299|consen 221 GRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSY-VETLYGHQDGVLGIDALSR-E 298 (479)
T ss_pred CCCceEEEecCcccchhhcccccccceeeeeeecCccceeeeecCCceEEEehhHhHH-HHHHhCCccceeeechhcc-c
Confidence 9999999999999999999999999999999998888999999999999999997664 7889999999999998866 4
Q ss_pred eEEEEEeCCCcEEEEECCCCeeeeEEecCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEcC-C---------
Q 003236 654 DLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQG-H--------- 723 (837)
Q Consensus 654 ~llasgs~Dg~I~vwDl~t~~~i~~~~~~~~i~sl~~sp~g~~llags~dg~I~iwDl~s~~~~~~l~~-h--------- 723 (837)
.++..|+.|+++++|++.....+....+.+.+.|++|..+ .++++|+.+|.|.+|++-+.+++++... |
T Consensus 299 R~vtVGgrDrT~rlwKi~eesqlifrg~~~sidcv~~In~-~HfvsGSdnG~IaLWs~~KKkplf~~~~AHgv~~~~~~~ 377 (479)
T KOG0299|consen 299 RCVTVGGRDRTVRLWKIPEESQLIFRGGEGSIDCVAFIND-EHFVSGSDNGSIALWSLLKKKPLFTSRLAHGVIPELDPV 377 (479)
T ss_pred ceEEeccccceeEEEeccccceeeeeCCCCCeeeEEEecc-cceeeccCCceEEEeeecccCceeEeeccccccCCcccc
Confidence 4777788999999999965544444445567899999876 7899999999999999999888876542 2
Q ss_pred --CCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCC-ceeEEEeecCCCceEEEEEeCCCCEEEEEEcC-CeEEEE
Q 003236 724 --KNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSK-GECIHELSCTGNKFHSCVFHPTFPSLLVIGCY-ETLELW 795 (837)
Q Consensus 724 --~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~-~~~i~~~~~~~~~I~sv~fspdg~~L~sgs~d-g~I~Iw 795 (837)
..+|++++..|...++++|+ +|+|++|-+..+-. ...+..+. ..+.|++++|+++|+.|++|..- ..+--|
T Consensus 378 ~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i~~l~~ls-~~GfVNsl~f~~sgk~ivagiGkEhRlGRW 453 (479)
T KOG0299|consen 378 NGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAINLLYSLS-LVGFVNSLAFSNSGKRIVAGIGKEHRLGRW 453 (479)
T ss_pred ccccceeeeEecccCceEEecCCCCceEEEEecCCccccceeeecc-cccEEEEEEEccCCCEEEEeccccccccee
Confidence 23899999999999999999 99999999988732 23444444 56789999999999977777543 344333
|
|
| >KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.93 E-value=4.7e-25 Score=224.05 Aligned_cols=292 Identities=13% Similarity=0.216 Sum_probs=231.5
Q ss_pred cccCCCeEEcccCCCceEEeecCCCCCCCCccccccccCCCeeeeEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEE
Q 003236 502 LTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVL 581 (837)
Q Consensus 502 l~~~~~~v~~Gs~D~~v~~w~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~H~~~V~sl~fSpdg~~Lasgs~Dg~I~V 581 (837)
+.....++++|+.|.+|+++....-... .....+...........+++|..|.++|+++.|+|....|++|+.|++|++
T Consensus 120 fs~DG~lvATGsaD~SIKildvermlak-s~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre~ILiS~srD~tvKl 198 (430)
T KOG0640|consen 120 FSPDGSLVATGSADASIKILDVERMLAK-SKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRETILISGSRDNTVKL 198 (430)
T ss_pred eCCCCcEEEccCCcceEEEeehhhhhhh-cchhhhccCCcccCCceEeehhhccCcccceeecchhheEEeccCCCeEEE
Confidence 3444579999999999999965421111 111111222222233468899999999999999999999999999999999
Q ss_pred EeCCCCeEEEEec--cCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeE--EeeccccceEEEEEcCCCCeEEE
Q 003236 582 WCTESFTVKSTLE--EHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLR--TFTGHSTTVMSLDFHPSKEDLLC 657 (837)
Q Consensus 582 Wd~~t~~~~~~l~--~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~~~~~~~--~~~~h~~~V~sl~fspdg~~lla 657 (837)
||.......+.++ ....+|.++.|+|.|.+|++|..-.++++||+++-.+-+. .-..|.+.|+++.+++.+. +.+
T Consensus 199 FDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~QcfvsanPd~qht~ai~~V~Ys~t~~-lYv 277 (430)
T KOG0640|consen 199 FDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTGAITQVRYSSTGS-LYV 277 (430)
T ss_pred EecccHHHHHHHHHhhccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecCcccccccceeEEEecCCcc-EEE
Confidence 9987644332222 3456899999999999999999999999999998654322 2346899999999999976 667
Q ss_pred EEeCCCcEEEEECCCCeeeeEEec---CCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEcCCC--C---CEEE
Q 003236 658 SCDNNSEIRYWSINNGSCAGVFKC---QSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHK--N---QVHS 729 (837)
Q Consensus 658 sgs~Dg~I~vwDl~t~~~i~~~~~---~~~i~sl~~sp~g~~llags~dg~I~iwDl~s~~~~~~l~~h~--~---~V~s 729 (837)
+++.||.|++||--+++|+.++.. ...|.+..|..+++++++.+.|..|++|++.+++++..+.+.. + .-+.
T Consensus 278 TaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~l~~YtGAg~tgrq~~rtq 357 (430)
T KOG0640|consen 278 TASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTGRMLKEYTGAGTTGRQKHRTQ 357 (430)
T ss_pred EeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcceeeeeeecCCceEEEEecCCcccchhhhhh
Confidence 999999999999999999998864 4569999999999999999999999999999999999887631 1 2234
Q ss_pred EEEcCCCCEEEEEe--CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEEC
Q 003236 730 VCWNTSGEYLASVS--DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNM 797 (837)
Q Consensus 730 l~~spdg~~Lasgs--Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fspdg~~L~sgs~dg~I~IwDl 797 (837)
..|+....|++.-. .+.+.-||.++... ....-.+|.+.+..+.-+|.+.-+++++.|..+++|--
T Consensus 358 AvFNhtEdyVl~pDEas~slcsWdaRtadr--~~l~slgHn~a~R~i~HSP~~p~FmTcsdD~raRFWyr 425 (430)
T KOG0640|consen 358 AVFNHTEDYVLFPDEASNSLCSWDARTADR--VALLSLGHNGAVRWIVHSPVEPAFMTCSDDFRARFWYR 425 (430)
T ss_pred hhhcCccceEEccccccCceeeccccchhh--hhhcccCCCCCceEEEeCCCCCceeeecccceeeeeee
Confidence 56777788888776 66899999998743 22233478999999999999999999999999999954
|
|
| >KOG1539 consensus WD repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.93 E-value=6.5e-23 Score=231.44 Aligned_cols=290 Identities=16% Similarity=0.281 Sum_probs=233.3
Q ss_pred eEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEeccCCCCeEEEEEcCCCCE-EEEEeCCCeEEEE
Q 003236 546 TEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSR-LATSSADRTVRVW 624 (837)
Q Consensus 546 ~~~~~l~~H~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~I~~l~fspdg~~-Latgs~Dg~I~IW 624 (837)
+.+.++.++.+.|+++.=+|-=..+|.|..+|+|.|++++.++.+.+++...+.|+.+.|..||.. +++|+..|.+.+|
T Consensus 193 K~v~~f~~~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~dkil~sFk~d~g~VtslSFrtDG~p~las~~~~G~m~~w 272 (910)
T KOG1539|consen 193 KVVYTFQEFFSRITAIEQSPALDVVAIGLENGTVIIFNLKFDKILMSFKQDWGRVTSLSFRTDGNPLLASGRSNGDMAFW 272 (910)
T ss_pred cEEEEecccccceeEeccCCcceEEEEeccCceEEEEEcccCcEEEEEEccccceeEEEeccCCCeeEEeccCCceEEEE
Confidence 457888999999999999998889999999999999999999999999855699999999999876 5566667999999
Q ss_pred EcCCCCceeEEeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCC-------------------------------
Q 003236 625 DTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNG------------------------------- 673 (837)
Q Consensus 625 Dl~~~~~~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~------------------------------- 673 (837)
|++..+........|.+.|..+.|.+... ++++++.|+.+++|=..++
T Consensus 273 DLe~kkl~~v~~nah~~sv~~~~fl~~ep-Vl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~il 351 (910)
T KOG1539|consen 273 DLEKKKLINVTRNAHYGSVTGATFLPGEP-VLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFIL 351 (910)
T ss_pred EcCCCeeeeeeeccccCCcccceecCCCc-eEeeccCCCceeEEEeeCCCCcchheeeccCCCCCchheeeeccCcEEEE
Confidence 99976654444556666666666665533 4555555655554422210
Q ss_pred --------------------------------------------------------------------------------
Q 003236 674 -------------------------------------------------------------------------------- 673 (837)
Q Consensus 674 -------------------------------------------------------------------------------- 673 (837)
T Consensus 352 sa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n 431 (910)
T KOG1539|consen 352 SAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRN 431 (910)
T ss_pred ecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccC
Confidence
Q ss_pred -ee-eeEEecC------CCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEE---cCCCCCEEEEEEcCCCCEEEEE
Q 003236 674 -SC-AGVFKCQ------SGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKL---QGHKNQVHSVCWNTSGEYLASV 742 (837)
Q Consensus 674 -~~-i~~~~~~------~~i~sl~~sp~g~~llags~dg~I~iwDl~s~~~~~~l---~~h~~~V~sl~~spdg~~Lasg 742 (837)
.. ...+... ..+++++.++.|++.+.|...|.|.+|++.+|.....+ ..|..+|++++.+.-++.++++
T Consensus 432 ~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa 511 (910)
T KOG1539|consen 432 KTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSA 511 (910)
T ss_pred cccccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEEEcccCeeecccccCccccCceeEEEecCCCceEEEc
Confidence 00 0011111 23678888999999999999999999999999988888 4799999999999989989888
Q ss_pred e-CCeEEEEEcCCCCCc--------------------------------------eeEEEeecCCCceEEEEEeCCCCEE
Q 003236 743 S-DELVRVWSIGSGSKG--------------------------------------ECIHELSCTGNKFHSCVFHPTFPSL 783 (837)
Q Consensus 743 s-Dg~I~IwDl~s~~~~--------------------------------------~~i~~~~~~~~~I~sv~fspdg~~L 783 (837)
+ +|.+++||+...... +.++.+.+|.+.|++++|||||++|
T Consensus 512 ~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrWl 591 (910)
T KOG1539|consen 512 GADGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRWL 591 (910)
T ss_pred cCcceEEEEecCCcceeeeeccCCCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhhccccceeeeEeCCCCcEE
Confidence 8 999999998764310 1122456789999999999999999
Q ss_pred EEEEcCCeEEEEECCCCcEEEeccCCCCeeEEEEeCCCCEEEEEECC-CcEEEe
Q 003236 784 LVIGCYETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHD-KCVKIW 836 (837)
Q Consensus 784 ~sgs~dg~I~IwDl~s~~~~~l~~h~~~V~sla~spdg~~LaSgs~D-G~I~IW 836 (837)
++++.|++|++||+.++.++-...-+.+.+++.|+|+|.+|||+..| .-|++|
T Consensus 592 isasmD~tIr~wDlpt~~lID~~~vd~~~~sls~SPngD~LAT~Hvd~~gIylW 645 (910)
T KOG1539|consen 592 ISASMDSTIRTWDLPTGTLIDGLLVDSPCTSLSFSPNGDFLATVHVDQNGIYLW 645 (910)
T ss_pred EEeecCCcEEEEeccCcceeeeEecCCcceeeEECCCCCEEEEEEecCceEEEE
Confidence 99999999999999999999777778899999999999999999988 679999
|
|
| >KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.1e-24 Score=239.94 Aligned_cols=317 Identities=15% Similarity=0.227 Sum_probs=255.1
Q ss_pred cCCCeEEcccCCCceEEeecCCCCCCCCccccccccCCCeeeeEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEe
Q 003236 504 DMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWC 583 (837)
Q Consensus 504 ~~~~~v~~Gs~D~~v~~w~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~H~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd 583 (837)
...+++.+|+.|+.++.|........ ..-..+..+..|.+.|..+....+++.|++++.|-+|++|+
T Consensus 35 ~~~ryLfTgGRDg~i~~W~~~~d~~~-------------~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~ 101 (735)
T KOG0308|consen 35 PNGRYLFTGGRDGIIRLWSVTQDSNE-------------PSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWN 101 (735)
T ss_pred CCCceEEecCCCceEEEeccccccCC-------------cccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEee
Confidence 34568999999999999966544211 00113567789999999999999999999999999999999
Q ss_pred CCCC--eEEEEeccCCCCeEEEEE-cCCCCEEEEEeCCCeEEEEEcCCCCc---------eeEEee-ccccceEEEEEcC
Q 003236 584 TESF--TVKSTLEEHTQWITDVRF-SPSLSRLATSSADRTVRVWDTENPDY---------SLRTFT-GHSTTVMSLDFHP 650 (837)
Q Consensus 584 ~~t~--~~~~~l~~h~~~I~~l~f-spdg~~Latgs~Dg~I~IWDl~~~~~---------~~~~~~-~h~~~V~sl~fsp 650 (837)
...+ -++.++..|.+.|.|+++ -++..++|+|+.|+.|.|||++++.. ....+. ++...|++++-++
T Consensus 102 ~~~~~~~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~ 181 (735)
T KOG0308|consen 102 AHKDNTFCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQ 181 (735)
T ss_pred cccCcchhHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCC
Confidence 8877 577889999999999999 77889999999999999999996521 122333 7889999999999
Q ss_pred CCCeEEEEEeCCCcEEEEECCCCeeeeEEec-CCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEcCCCCCEEE
Q 003236 651 SKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHS 729 (837)
Q Consensus 651 dg~~llasgs~Dg~I~vwDl~t~~~i~~~~~-~~~i~sl~~sp~g~~llags~dg~I~iwDl~s~~~~~~l~~h~~~V~s 729 (837)
.+ .++++|+..+.|++||.++++.+..+.. ...|.++..+++|..+++++.||+|++||+...+|+.++..|...|.+
T Consensus 182 t~-t~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e~VWa 260 (735)
T KOG0308|consen 182 TG-TIIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYIVHKEGVWA 260 (735)
T ss_pred cc-eEEEecCcccceEEeccccccceeeeeccccceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeEEeccCceEE
Confidence 87 5888999999999999999988877775 457999999999999999999999999999999999999999999999
Q ss_pred EEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE-----
Q 003236 730 VCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL----- 803 (837)
Q Consensus 730 l~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fspdg~~L~sgs~dg~I~IwDl~s~~~~----- 803 (837)
+..+|+-.++++|+ |+.|..-|+++......+ -....+|..+..+....-+-+++.|+.|+-|...-...+
T Consensus 261 L~~~~sf~~vYsG~rd~~i~~Tdl~n~~~~tli---ck~daPv~~l~~~~~~~~~WvtTtds~I~rW~~~~~~~l~~s~~ 337 (735)
T KOG0308|consen 261 LQSSPSFTHVYSGGRDGNIYRTDLRNPAKSTLI---CKEDAPVLKLHLHEHDNSVWVTTTDSSIKRWKLEPDIALSVSGD 337 (735)
T ss_pred EeeCCCcceEEecCCCCcEEecccCCchhheEe---ecCCCchhhhhhccccCCceeeeccccceecCCccccccccCCC
Confidence 99999999999999 999999999986322222 223566777777765555688888888888865321111
Q ss_pred --------------------EeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 003236 804 --------------------TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 837 (837)
Q Consensus 804 --------------------~l~~h~~~V~sla~spdg~~LaSgs~DG~I~IWd 837 (837)
........|...++-.|.++++|=...|.+.+||
T Consensus 338 ~~~~~T~~~~~~~~~~~tp~~vi~Gg~ai~k~~mL~dkRhVlTkDa~gnv~lwD 391 (735)
T KOG0308|consen 338 LDFFSTDSNNHSCDLTNTPDSVIPGGAAIKKHAMLNDKRHVLTKDAKGNVALWD 391 (735)
T ss_pred CCcccccCCCccccccCCCceeccCchhhhhhhhhcCcceEeeecCCCCEEEEE
Confidence 0011112344445556788999999999999997
|
|
| >KOG2055 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.92 E-value=7.7e-24 Score=225.59 Aligned_cols=283 Identities=17% Similarity=0.250 Sum_probs=237.4
Q ss_pred CCCCeEEEEEcCCCCEEEEEECCCcEEEEeCC--CCeEEEEeccCCCCeEEEEEcCCCC-EEEEEeCCCeEEEEEcCCCC
Q 003236 554 STSKVESCHFSPDGKLLATGGHDKKAVLWCTE--SFTVKSTLEEHTQWITDVRFSPSLS-RLATSSADRTVRVWDTENPD 630 (837)
Q Consensus 554 H~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~--t~~~~~~l~~h~~~I~~l~fspdg~-~Latgs~Dg~I~IWDl~~~~ 630 (837)
..+.|+||.|+|...+|++++.|++++||-++ ....+..+.-...+|.+.+|.|+|. .+++++....++.||+.+.+
T Consensus 212 s~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak 291 (514)
T KOG2055|consen 212 SHGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAK 291 (514)
T ss_pred CcCCceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEecccceEEEEeeccccc
Confidence 34679999999999999999999999999765 3445666666778999999999999 89999999999999999866
Q ss_pred ce-eEEeeccc-cceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeeEEecCCCeeEEEEecCCCEEEEEEcCCeEEE
Q 003236 631 YS-LRTFTGHS-TTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISI 708 (837)
Q Consensus 631 ~~-~~~~~~h~-~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~~~~i~sl~~sp~g~~llags~dg~I~i 708 (837)
.. +....++. ..+..+..++++. +|+..+..|.|.+....+++.+..++.++.+..++|+.+++.|++++.+|.|++
T Consensus 292 ~~k~~~~~g~e~~~~e~FeVShd~~-fia~~G~~G~I~lLhakT~eli~s~KieG~v~~~~fsSdsk~l~~~~~~GeV~v 370 (514)
T KOG2055|consen 292 VTKLKPPYGVEEKSMERFEVSHDSN-FIAIAGNNGHIHLLHAKTKELITSFKIEGVVSDFTFSSDSKELLASGGTGEVYV 370 (514)
T ss_pred cccccCCCCcccchhheeEecCCCC-eEEEcccCceEEeehhhhhhhhheeeeccEEeeEEEecCCcEEEEEcCCceEEE
Confidence 42 22333333 4577788899977 666788899999999999999999999999999999999999999999999999
Q ss_pred EECCCCeEEEEEcCCCC-CEEEEEEcCCCCEEEEEe-CCeEEEEEcCCC---CCceeEEEeecCCCceEEEEEeCCCCEE
Q 003236 709 LDVETQVCRLKLQGHKN-QVHSVCWNTSGEYLASVS-DELVRVWSIGSG---SKGECIHELSCTGNKFHSCVFHPTFPSL 783 (837)
Q Consensus 709 wDl~s~~~~~~l~~h~~-~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~---~~~~~i~~~~~~~~~I~sv~fspdg~~L 783 (837)
||++...+++.+....+ .-+++|.++++.|||+|+ .|.|.|||..+. ..++++..+..-...|+++.|+++...|
T Consensus 371 ~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d~qiL 450 (514)
T KOG2055|consen 371 WNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQFNHDAQIL 450 (514)
T ss_pred EecCCcceEEEEeecCccceeeeeecCCCceEEeccCcceEEEeccchhhccCCCCchhhhhhhheeeeeeeeCcchhhh
Confidence 99999999998874322 335778889999999999 889999997653 3346777777778899999999999988
Q ss_pred EEEEc--CCeEEEEECCCCcEE-Eec---cCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 003236 784 LVIGC--YETLELWNMTENKTL-TLS---AHDKLVSSLAASTVNGMVASASHDKCVKIWK 837 (837)
Q Consensus 784 ~sgs~--dg~I~IwDl~s~~~~-~l~---~h~~~V~sla~spdg~~LaSgs~DG~I~IWd 837 (837)
+.++. .+.+++..+.+..+. .+. ..-+.|+|++|+|.+.+||.|..+|.|.+|+
T Consensus 451 AiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP~sG~lAvGNe~grv~l~k 510 (514)
T KOG2055|consen 451 AIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSPNSGYLAVGNEAGRVHLFK 510 (514)
T ss_pred hhhhhccccceEEEeccceeeeccCCCCCCcccceEEEEecCCCceEEeecCCCceeeEe
Confidence 88776 458999999887776 222 3345799999999999999999999999995
|
|
| >KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.4e-23 Score=224.55 Aligned_cols=277 Identities=18% Similarity=0.262 Sum_probs=234.0
Q ss_pred CCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCC---eEEEEec--cCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcC
Q 003236 553 ASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESF---TVKSTLE--EHTQWITDVRFSPSLSRLATSSADRTVRVWDTE 627 (837)
Q Consensus 553 ~H~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~---~~~~~l~--~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~ 627 (837)
.|..-|.++.+|...++++||+. |.|+|||+... ..+..+. .....|.++.+.|||+.|++|++-.++.|||+.
T Consensus 417 ~HGEvVcAvtIS~~trhVyTgGk-gcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGeastlsiWDLA 495 (705)
T KOG0639|consen 417 AHGEVVCAVTISNPTRHVYTGGK-GCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEASTLSIWDLA 495 (705)
T ss_pred ccCcEEEEEEecCCcceeEecCC-CeEEEeeccCCCCCCccccccccCcccceeeeEecCCCceEEeccccceeeeeecc
Confidence 78888999999999999999985 78999998642 2333332 345789999999999999999999999999999
Q ss_pred CCCceeEE-eeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeeEEec-CCCeeEEEEecCCCEEEEEEcCCe
Q 003236 628 NPDYSLRT-FTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAIENY 705 (837)
Q Consensus 628 ~~~~~~~~-~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~-~~~i~sl~~sp~g~~llags~dg~ 705 (837)
.....++. +....-.++.++.+||.+ +.++|..||.|.|||+.+...++.|.. ..++.||.++++|..|.+|+-|++
T Consensus 496 apTprikaeltssapaCyALa~spDak-vcFsccsdGnI~vwDLhnq~~VrqfqGhtDGascIdis~dGtklWTGGlDnt 574 (705)
T KOG0639|consen 496 APTPRIKAELTSSAPACYALAISPDAK-VCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISKDGTKLWTGGLDNT 574 (705)
T ss_pred CCCcchhhhcCCcchhhhhhhcCCccc-eeeeeccCCcEEEEEcccceeeecccCCCCCceeEEecCCCceeecCCCccc
Confidence 76644432 333334577899999976 555777799999999999999999985 568999999999999999999999
Q ss_pred EEEEECCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEE
Q 003236 706 ISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLL 784 (837)
Q Consensus 706 I~iwDl~s~~~~~~l~~h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fspdg~~L~ 784 (837)
|+.||++++..+.... ..+.|.++..+|.+.+|++|- .+.|.|...... ..+.+.-|...|.++.|.+.|++++
T Consensus 575 vRcWDlregrqlqqhd-F~SQIfSLg~cP~~dWlavGMens~vevlh~skp----~kyqlhlheScVLSlKFa~cGkwfv 649 (705)
T KOG0639|consen 575 VRCWDLREGRQLQQHD-FSSQIFSLGYCPTGDWLAVGMENSNVEVLHTSKP----EKYQLHLHESCVLSLKFAYCGKWFV 649 (705)
T ss_pred eeehhhhhhhhhhhhh-hhhhheecccCCCccceeeecccCcEEEEecCCc----cceeecccccEEEEEEecccCceee
Confidence 9999999987665443 567899999999999999999 778888877654 3455667889999999999999999
Q ss_pred EEEcCCeEEEEECCCCcEEEeccCCCCeeEEEEeCCCCEEEEEECCCcEEEe
Q 003236 785 VIGCYETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIW 836 (837)
Q Consensus 785 sgs~dg~I~IwDl~s~~~~~l~~h~~~V~sla~spdg~~LaSgs~DG~I~IW 836 (837)
+.+.|+.+-.|...-|..+--......|.++.++.|.+||+||+.|....||
T Consensus 650 StGkDnlLnawrtPyGasiFqskE~SsVlsCDIS~ddkyIVTGSGdkkATVY 701 (705)
T KOG0639|consen 650 STGKDNLLNAWRTPYGASIFQSKESSSVLSCDISFDDKYIVTGSGDKKATVY 701 (705)
T ss_pred ecCchhhhhhccCccccceeeccccCcceeeeeccCceEEEecCCCcceEEE
Confidence 9999999999999988877666777899999999999999999999887776
|
|
| >KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.1e-23 Score=233.67 Aligned_cols=275 Identities=16% Similarity=0.266 Sum_probs=230.2
Q ss_pred eEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEE--EEeccCCCCeEE-EEEcC-CCCEEEEEeCCCeE
Q 003236 546 TEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVK--STLEEHTQWITD-VRFSP-SLSRLATSSADRTV 621 (837)
Q Consensus 546 ~~~~~l~~H~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~~--~~l~~h~~~I~~-l~fsp-dg~~Latgs~Dg~I 621 (837)
+.-+.+.+|...|..|++.+.. .++++++||++++|+-.....+ ..+.+|.+.|.+ ++|.+ ++-.|++|+.|.+|
T Consensus 5 ~ls~~l~gH~~DVr~v~~~~~~-~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i 83 (745)
T KOG0301|consen 5 KLSHELEGHKSDVRAVAVTDGV-CIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDTTI 83 (745)
T ss_pred eeEEEeccCccchheeEecCCe-EEeecCCCCceeeeeccCcccccceecccCcceeeccceeccccCcceEeecccceE
Confidence 3456788999999999887544 8999999999999996554433 456778888888 88886 45569999999999
Q ss_pred EEEEcCCCCceeEEeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeeEEe-cCCCeeEEEEecCCCEEEEE
Q 003236 622 RVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK-CQSGATQMRFQPRLGRILAA 700 (837)
Q Consensus 622 ~IWDl~~~~~~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~-~~~~i~sl~~sp~g~~llag 700 (837)
.+|...... ++.++.+|...|.|++...++. +++|+.|.++++|-+. ++...+. |...|..+...|++ .+++|
T Consensus 84 ~v~~~~~~~-P~~~LkgH~snVC~ls~~~~~~--~iSgSWD~TakvW~~~--~l~~~l~gH~asVWAv~~l~e~-~~vTg 157 (745)
T KOG0301|consen 84 IVFKLSQAE-PLYTLKGHKSNVCSLSIGEDGT--LISGSWDSTAKVWRIG--ELVYSLQGHTASVWAVASLPEN-TYVTG 157 (745)
T ss_pred EEEecCCCC-chhhhhccccceeeeecCCcCc--eEecccccceEEecch--hhhcccCCcchheeeeeecCCC-cEEec
Confidence 999999755 6899999999999999877654 6799999999999775 3333344 45678899998886 89999
Q ss_pred EcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCC
Q 003236 701 AIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTF 780 (837)
Q Consensus 701 s~dg~I~iwDl~s~~~~~~l~~h~~~V~sl~~spdg~~LasgsDg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fspdg 780 (837)
+.|..|++|.- ++++.+|.+|.+.|+.+++-+++.+|.++.||.|++|++ ++ +++.+..+|.+-++++....++
T Consensus 158 saDKtIklWk~--~~~l~tf~gHtD~VRgL~vl~~~~flScsNDg~Ir~w~~-~g---e~l~~~~ghtn~vYsis~~~~~ 231 (745)
T KOG0301|consen 158 SADKTIKLWKG--GTLLKTFSGHTDCVRGLAVLDDSHFLSCSNDGSIRLWDL-DG---EVLLEMHGHTNFVYSISMALSD 231 (745)
T ss_pred cCcceeeeccC--CchhhhhccchhheeeeEEecCCCeEeecCCceEEEEec-cC---ceeeeeeccceEEEEEEecCCC
Confidence 99999999986 678899999999999999999888777777999999999 44 7899999999999999988888
Q ss_pred CEEEEEEcCCeEEEEECCCCcEEEeccCC-CCeeEEEEeCCCCEEEEEECCCcEEEe
Q 003236 781 PSLLVIGCYETLELWNMTENKTLTLSAHD-KLVSSLAASTVNGMVASASHDKCVKIW 836 (837)
Q Consensus 781 ~~L~sgs~dg~I~IwDl~s~~~~~l~~h~-~~V~sla~spdg~~LaSgs~DG~I~IW 836 (837)
..|++++.|++++||+.. ++.....|. ..|+++.+-++|. |++|+.||.|+||
T Consensus 232 ~~Ivs~gEDrtlriW~~~--e~~q~I~lPttsiWsa~~L~NgD-Ivvg~SDG~VrVf 285 (745)
T KOG0301|consen 232 GLIVSTGEDRTLRIWKKD--ECVQVITLPTTSIWSAKVLLNGD-IVVGGSDGRVRVF 285 (745)
T ss_pred CeEEEecCCceEEEeecC--ceEEEEecCccceEEEEEeeCCC-EEEeccCceEEEE
Confidence 899999999999999977 555444444 4899999887775 5678889999998
|
|
| >KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.4e-23 Score=223.88 Aligned_cols=279 Identities=20% Similarity=0.294 Sum_probs=227.2
Q ss_pred EEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEE----EE---e-----------ccCCCCeEEEEEcCCC
Q 003236 548 FQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVK----ST---L-----------EEHTQWITDVRFSPSL 609 (837)
Q Consensus 548 ~~~l~~H~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~~----~~---l-----------~~h~~~I~~l~fspdg 609 (837)
+..+..|.-+|+||+++||.+++++++.|++|.=|++.+++.. .. + +.|...|.+++.++|+
T Consensus 135 ~~~~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dg 214 (479)
T KOG0299|consen 135 FRVIGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDG 214 (479)
T ss_pred ceeeccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCC
Confidence 7788899999999999999999999999999999998877633 11 0 2688899999999999
Q ss_pred CEEEEEeCCCeEEEEEcCCCCceeEEeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeeEE-ecCCCeeEE
Q 003236 610 SRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVF-KCQSGATQM 688 (837)
Q Consensus 610 ~~Latgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~-~~~~~i~sl 688 (837)
+||++|+.|..|.||+..+.+. +..+.+|.+.|.+++|-..- .-+++++.|+.|++|++.....+.++ .+.+.|..+
T Consensus 215 kylatgg~d~~v~Iw~~~t~eh-v~~~~ghr~~V~~L~fr~gt-~~lys~s~Drsvkvw~~~~~s~vetlyGHqd~v~~I 292 (479)
T KOG0299|consen 215 KYLATGGRDRHVQIWDCDTLEH-VKVFKGHRGAVSSLAFRKGT-SELYSASADRSVKVWSIDQLSYVETLYGHQDGVLGI 292 (479)
T ss_pred cEEEecCCCceEEEecCcccch-hhcccccccceeeeeeecCc-cceeeeecCCceEEEehhHhHHHHHHhCCccceeee
Confidence 9999999999999999998764 78899999999999998654 45568889999999999987766654 457789999
Q ss_pred EEecCCCEEEEEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEee-c
Q 003236 689 RFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELS-C 766 (837)
Q Consensus 689 ~~sp~g~~llags~dg~I~iwDl~s~~~~~~l~~h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~-~ 766 (837)
.....++.+-+|+.|.++++|++. ......+.+|.+.+-|++|-.+.. +++|+ +|.|.+|++...+ ++.+.. .
T Consensus 293 daL~reR~vtVGgrDrT~rlwKi~-eesqlifrg~~~sidcv~~In~~H-fvsGSdnG~IaLWs~~KKk---plf~~~~A 367 (479)
T KOG0299|consen 293 DALSRERCVTVGGRDRTVRLWKIP-EESQLIFRGGEGSIDCVAFINDEH-FVSGSDNGSIALWSLLKKK---PLFTSRLA 367 (479)
T ss_pred chhcccceEEeccccceeEEEecc-ccceeeeeCCCCCeeeEEEecccc-eeeccCCceEEEeeecccC---ceeEeecc
Confidence 888887888888899999999994 344556778999999999986554 55566 9999999998763 333221 1
Q ss_pred C-----------CCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCc----EEEeccCCCCeeEEEEeCCCCEEEEE-ECC
Q 003236 767 T-----------GNKFHSCVFHPTFPSLLVIGCYETLELWNMTENK----TLTLSAHDKLVSSLAASTVNGMVASA-SHD 830 (837)
Q Consensus 767 ~-----------~~~I~sv~fspdg~~L~sgs~dg~I~IwDl~s~~----~~~l~~h~~~V~sla~spdg~~LaSg-s~D 830 (837)
| ...|++++..|..+.+++|+.+|.|++|-+.++- ++.-..-.+.|++|+|+++|+.|++| +..
T Consensus 368 Hgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i~~l~~ls~~GfVNsl~f~~sgk~ivagiGkE 447 (479)
T KOG0299|consen 368 HGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAINLLYSLSLVGFVNSLAFSNSGKRIVAGIGKE 447 (479)
T ss_pred ccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCccccceeeecccccEEEEEEEccCCCEEEEecccc
Confidence 1 1278999999999999999999999999998882 33333567889999999999965555 444
Q ss_pred CcE
Q 003236 831 KCV 833 (837)
Q Consensus 831 G~I 833 (837)
..+
T Consensus 448 hRl 450 (479)
T KOG0299|consen 448 HRL 450 (479)
T ss_pred ccc
Confidence 333
|
|
| >TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein | Back alignment and domain information |
|---|
Probab=99.92 E-value=5.3e-22 Score=214.03 Aligned_cols=286 Identities=14% Similarity=0.124 Sum_probs=212.2
Q ss_pred CeEEcccCCCceEEeecCCCCCCCCccccccccCCCeeeeEEEEecCCCCCeEEEEEcCCCCEE-EEEECCCcEEEEeCC
Q 003236 507 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLL-ATGGHDKKAVLWCTE 585 (837)
Q Consensus 507 ~~v~~Gs~D~~v~~w~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~H~~~V~sl~fSpdg~~L-asgs~Dg~I~VWd~~ 585 (837)
.++++++.|+.+.+|..... ..+..+..|.. +.+++|+|+++.+ ++++.++.|++||..
T Consensus 2 ~~~~s~~~d~~v~~~d~~t~-------------------~~~~~~~~~~~-~~~l~~~~dg~~l~~~~~~~~~v~~~d~~ 61 (300)
T TIGR03866 2 KAYVSNEKDNTISVIDTATL-------------------EVTRTFPVGQR-PRGITLSKDGKLLYVCASDSDTIQVIDLA 61 (300)
T ss_pred cEEEEecCCCEEEEEECCCC-------------------ceEEEEECCCC-CCceEECCCCCEEEEEECCCCeEEEEECC
Confidence 45677888899999964322 12344444443 6789999999976 566788999999999
Q ss_pred CCeEEEEeccCCCCeEEEEEcCCCCEEEEE-eCCCeEEEEEcCCCCceeEEeeccccceEEEEEcCCCCeEEEEEeCCCc
Q 003236 586 SFTVKSTLEEHTQWITDVRFSPSLSRLATS-SADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSE 664 (837)
Q Consensus 586 t~~~~~~l~~h~~~I~~l~fspdg~~Latg-s~Dg~I~IWDl~~~~~~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~ 664 (837)
+++....+..+.. +..++|+|+++.++++ +.|+.|++||+.+... +..+. +...+.+++|+|++..++++...+..
T Consensus 62 ~~~~~~~~~~~~~-~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~-~~~~~-~~~~~~~~~~~~dg~~l~~~~~~~~~ 138 (300)
T TIGR03866 62 TGEVIGTLPSGPD-PELFALHPNGKILYIANEDDNLVTVIDIETRKV-LAEIP-VGVEPEGMAVSPDGKIVVNTSETTNM 138 (300)
T ss_pred CCcEEEeccCCCC-ccEEEECCCCCEEEEEcCCCCeEEEEECCCCeE-EeEee-CCCCcceEEECCCCCEEEEEecCCCe
Confidence 9888877765544 5788999999877655 5689999999987543 44443 23457889999998865544433346
Q ss_pred EEEEECCCCeeeeEEecCCCeeEEEEecCCCEEEEEE-cCCeEEEEECCCCeEEEEEcCCC-----C--CEEEEEEcCCC
Q 003236 665 IRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAA-IENYISILDVETQVCRLKLQGHK-----N--QVHSVCWNTSG 736 (837)
Q Consensus 665 I~vwDl~t~~~i~~~~~~~~i~sl~~sp~g~~llags-~dg~I~iwDl~s~~~~~~l~~h~-----~--~V~sl~~spdg 736 (837)
+.+||.++++.+........+.++.|++++..+++++ .++.|.+||+++++.+..+..+. . ....++|+|++
T Consensus 139 ~~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg 218 (300)
T TIGR03866 139 AHFIDTKTYEIVDNVLVDQRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDG 218 (300)
T ss_pred EEEEeCCCCeEEEEEEcCCCccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCC
Confidence 7788999888777665556678899999999887665 58999999999988776654221 1 23568899999
Q ss_pred CEEEEEe--CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEE-cCCeEEEEECCCCcEEEeccCCCCee
Q 003236 737 EYLASVS--DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIG-CYETLELWNMTENKTLTLSAHDKLVS 813 (837)
Q Consensus 737 ~~Lasgs--Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fspdg~~L~sgs-~dg~I~IwDl~s~~~~~l~~h~~~V~ 813 (837)
++++++. ++.|.+||+.++ +.+..+. +...+.+++|+|++.+|++++ .++.|.+||+.+++++.........+
T Consensus 219 ~~~~~~~~~~~~i~v~d~~~~---~~~~~~~-~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~ 294 (300)
T TIGR03866 219 KTAFVALGPANRVAVVDAKTY---EVLDYLL-VGQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAALKVIKSIKVGRLPW 294 (300)
T ss_pred CEEEEEcCCCCeEEEEECCCC---cEEEEEE-eCCCcceEEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEEcccccc
Confidence 9865543 778999999876 3333332 345788999999999998875 58899999999999874444556778
Q ss_pred EEEEeC
Q 003236 814 SLAAST 819 (837)
Q Consensus 814 sla~sp 819 (837)
.++++|
T Consensus 295 ~~~~~~ 300 (300)
T TIGR03866 295 GVVVRP 300 (300)
T ss_pred eeEeCC
Confidence 888865
|
Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol. |
| >KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.7e-23 Score=233.11 Aligned_cols=239 Identities=21% Similarity=0.324 Sum_probs=211.5
Q ss_pred CCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEecc-CCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCcee
Q 003236 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEE-HTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSL 633 (837)
Q Consensus 555 ~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~-h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~~~~~~ 633 (837)
...|+++.|+++|.+||+|..+|.|.|||..+.+.+..+.+ |...|-+++|. +..+.+|+.|+.|..+|+.......
T Consensus 217 ~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~~h~~rvg~laW~--~~~lssGsr~~~I~~~dvR~~~~~~ 294 (484)
T KOG0305|consen 217 EELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRGSHASRVGSLAWN--SSVLSSGSRDGKILNHDVRISQHVV 294 (484)
T ss_pred CCceEEEEECCCCCEEEEeecCCeEEEEehhhccccccccCCcCceeEEEecc--CceEEEecCCCcEEEEEEecchhhh
Confidence 78899999999999999999999999999999999999988 99999999998 6789999999999999999877656
Q ss_pred EEeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeeEE-ecCCCeeEEEEecCC-CEEEEEE--cCCeEEEE
Q 003236 634 RTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVF-KCQSGATQMRFQPRL-GRILAAA--IENYISIL 709 (837)
Q Consensus 634 ~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~-~~~~~i~sl~~sp~g-~~llags--~dg~I~iw 709 (837)
..+.+|...|..+.|++|+. .+++|+.|+.|.|||.........+ .+...|..++|+|-. +.|++|+ .|+.|++|
T Consensus 295 ~~~~~H~qeVCgLkws~d~~-~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fw 373 (484)
T KOG0305|consen 295 STLQGHRQEVCGLKWSPDGN-QLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFW 373 (484)
T ss_pred hhhhcccceeeeeEECCCCC-eeccCCCccceEeccCCCccccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEE
Confidence 66889999999999999976 7779999999999999766655555 456789999999954 4555554 48999999
Q ss_pred ECCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEe---CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEE
Q 003236 710 DVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS---DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVI 786 (837)
Q Consensus 710 Dl~s~~~~~~l~~h~~~V~sl~~spdg~~Lasgs---Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fspdg~~L~sg 786 (837)
|..+++.+..+. ..+.|++|.|++..+-|+++. ++.|.||++.+. ..+..+.+|...|..++++|||..|+++
T Consensus 374 n~~~g~~i~~vd-tgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~---~~~~~l~gH~~RVl~la~SPdg~~i~t~ 449 (484)
T KOG0305|consen 374 NTNTGARIDSVD-TGSQVCSLIWSKKYKELLSTHGYSENQITLWKYPSM---KLVAELLGHTSRVLYLALSPDGETIVTG 449 (484)
T ss_pred EcCCCcEecccc-cCCceeeEEEcCCCCEEEEecCCCCCcEEEEecccc---ceeeeecCCcceeEEEEECCCCCEEEEe
Confidence 999999888776 567899999999987666654 779999999886 7888999999999999999999999999
Q ss_pred EcCCeEEEEECCCC
Q 003236 787 GCYETLELWNMTEN 800 (837)
Q Consensus 787 s~dg~I~IwDl~s~ 800 (837)
+.|.++++|++-+.
T Consensus 450 a~DETlrfw~~f~~ 463 (484)
T KOG0305|consen 450 AADETLRFWNLFDE 463 (484)
T ss_pred cccCcEEeccccCC
Confidence 99999999998764
|
|
| >KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.8e-23 Score=207.96 Aligned_cols=234 Identities=19% Similarity=0.291 Sum_probs=212.5
Q ss_pred EeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeEEeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECC
Q 003236 592 TLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSIN 671 (837)
Q Consensus 592 ~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~ 671 (837)
.+.+|+.+++.|.|+.+|.+|++|+.|.++.||-..+++ .+-++.+|.+.|+|++.+.+.. .+++|+.|.++++||++
T Consensus 5 ~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGe-rlGty~GHtGavW~~Did~~s~-~liTGSAD~t~kLWDv~ 82 (327)
T KOG0643|consen 5 LLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGE-RLGTYDGHTGAVWCCDIDWDSK-HLITGSADQTAKLWDVE 82 (327)
T ss_pred ccccCccccceEEecCCCcEEEEecCCCCceEEEecCCc-eeeeecCCCceEEEEEecCCcc-eeeeccccceeEEEEcC
Confidence 457899999999999999999999999999999887766 4899999999999999998866 55699999999999999
Q ss_pred CCeeeeEEecCCCeeEEEEecCCCEEEEEEcC-----CeEEEEECC-------CCeEEEEEcCCCCCEEEEEEcCCCCEE
Q 003236 672 NGSCAGVFKCQSGATQMRFQPRLGRILAAAIE-----NYISILDVE-------TQVCRLKLQGHKNQVHSVCWNTSGEYL 739 (837)
Q Consensus 672 t~~~i~~~~~~~~i~sl~~sp~g~~llags~d-----g~I~iwDl~-------s~~~~~~l~~h~~~V~sl~~spdg~~L 739 (837)
+|+++..++.+..|..+.|++++++++++..+ +.|.++|++ ..++...+..+.+.++.+.|.|-+++|
T Consensus 83 tGk~la~~k~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~i 162 (327)
T KOG0643|consen 83 TGKQLATWKTNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGETI 162 (327)
T ss_pred CCcEEEEeecCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCCEE
Confidence 99999999999999999999999988887764 579999998 456688888899999999999999999
Q ss_pred EEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEEEeccCCCCeeEEEEe
Q 003236 740 ASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSAHDKLVSSLAAS 818 (837)
Q Consensus 740 asgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fspdg~~L~sgs~dg~I~IwDl~s~~~~~l~~h~~~V~sla~s 818 (837)
++|. ||.|.+||++++. ..+.....|...|+.+.+++|..++++++.|.+-++||+.+..++.....+.+|++.+++
T Consensus 163 i~Ghe~G~is~~da~~g~--~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty~te~PvN~aais 240 (327)
T KOG0643|consen 163 IAGHEDGSISIYDARTGK--ELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKTYTTERPVNTAAIS 240 (327)
T ss_pred EEecCCCcEEEEEcccCc--eeeechhhhccccccccccCCcceEEecccCccceeeeccceeeEEEeeecccccceecc
Confidence 9999 9999999999974 566667788899999999999999999999999999999999999888889999999999
Q ss_pred CCCCEEEEEEC
Q 003236 819 TVNGMVASASH 829 (837)
Q Consensus 819 pdg~~LaSgs~ 829 (837)
|...+++.|+.
T Consensus 241 P~~d~VilgGG 251 (327)
T KOG0643|consen 241 PLLDHVILGGG 251 (327)
T ss_pred cccceEEecCC
Confidence 98887777653
|
|
| >PTZ00420 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=1e-22 Score=235.38 Aligned_cols=229 Identities=17% Similarity=0.233 Sum_probs=176.4
Q ss_pred EEEEecCCCCCeEEEEEcCC-CCEEEEEECCCcEEEEeCCCCe--------EEEEeccCCCCeEEEEEcCCCCE-EEEEe
Q 003236 547 EFQLIPASTSKVESCHFSPD-GKLLATGGHDKKAVLWCTESFT--------VKSTLEEHTQWITDVRFSPSLSR-LATSS 616 (837)
Q Consensus 547 ~~~~l~~H~~~V~sl~fSpd-g~~Lasgs~Dg~I~VWd~~t~~--------~~~~l~~h~~~I~~l~fspdg~~-Latgs 616 (837)
.+..+.+|.+.|.+++|+|+ +.+||+|+.|++|+|||+.++. .+..+.+|...|.+|+|+|++.. |++++
T Consensus 66 ~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS 145 (568)
T PTZ00420 66 PVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNYYIMCSSG 145 (568)
T ss_pred eEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECCCCCeEEEEEe
Confidence 56778999999999999996 7899999999999999997532 34567889999999999998875 57899
Q ss_pred CCCeEEEEEcCCCCceeEEeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeeEEecCCC-eeE-----EEE
Q 003236 617 ADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSG-ATQ-----MRF 690 (837)
Q Consensus 617 ~Dg~I~IWDl~~~~~~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~~~~-i~s-----l~~ 690 (837)
.|++|+|||+.++.. +..+. |...|.+++|+|+|. +|++++.|+.|++||+++++.+..+..+.. +.+ ..|
T Consensus 146 ~DgtIrIWDl~tg~~-~~~i~-~~~~V~SlswspdG~-lLat~s~D~~IrIwD~Rsg~~i~tl~gH~g~~~s~~v~~~~f 222 (568)
T PTZ00420 146 FDSFVNIWDIENEKR-AFQIN-MPKKLSSLKWNIKGN-LLSGTCVGKHMHIIDPRKQEIASSFHIHDGGKNTKNIWIDGL 222 (568)
T ss_pred CCCeEEEEECCCCcE-EEEEe-cCCcEEEEEECCCCC-EEEEEecCCEEEEEECCCCcEEEEEecccCCceeEEEEeeeE
Confidence 999999999998764 44444 567899999999987 566777899999999999998888775443 222 234
Q ss_pred ecCCCEEEEEEcCC----eEEEEECCC-CeEEEEEc--CCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEE
Q 003236 691 QPRLGRILAAAIEN----YISILDVET-QVCRLKLQ--GHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIH 762 (837)
Q Consensus 691 sp~g~~llags~dg----~I~iwDl~s-~~~~~~l~--~h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~ 762 (837)
++++++|++++.++ .|+|||++. ..++..+. .+.+.+......+++.++++|+ |+.|++|++..+. ...+.
T Consensus 223 s~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~lsGkGD~tIr~~e~~~~~-~~~l~ 301 (568)
T PTZ00420 223 GGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIYLIGKGDGNCRYYQHSLGS-IRKVN 301 (568)
T ss_pred cCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCCEEEEEECCCeEEEEEccCCc-EEeec
Confidence 58889999988774 799999995 45555443 2333333444455688888887 9999999998752 12333
Q ss_pred EeecCCCceEEEEEeCCC
Q 003236 763 ELSCTGNKFHSCVFHPTF 780 (837)
Q Consensus 763 ~~~~~~~~I~sv~fspdg 780 (837)
.+. +..++..++|.|..
T Consensus 302 ~~~-s~~p~~g~~f~Pkr 318 (568)
T PTZ00420 302 EYK-SCSPFRSFGFLPKQ 318 (568)
T ss_pred ccc-cCCCccceEEcccc
Confidence 333 55678889999974
|
|
| >KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown] | Back alignment and domain information |
|---|
Probab=99.92 E-value=9.7e-24 Score=226.88 Aligned_cols=285 Identities=16% Similarity=0.233 Sum_probs=219.0
Q ss_pred CCcccCCCccccCCCeEEcccCCCceEEeecCCCCCCCCccccccccCCCeeeeEEEEecCCCCCeEEEEEcCCCCEEEE
Q 003236 493 GSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLAT 572 (837)
Q Consensus 493 ~~~~~~~~~l~~~~~~v~~Gs~D~~v~~w~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~H~~~V~sl~fSpdg~~Las 572 (837)
|+-.++.-.++.....+++|++|.+|+.|+-..-... -..|+.+. ......|.++.|++.|..|++
T Consensus 166 gtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas------------~~~fr~l~--P~E~h~i~sl~ys~Tg~~iLv 231 (641)
T KOG0772|consen 166 GTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDAS------------MRSFRQLQ--PCETHQINSLQYSVTGDQILV 231 (641)
T ss_pred CceEEEEeeecCCCceeeeccccceEEEEeccccccc------------chhhhccC--cccccccceeeecCCCCeEEE
Confidence 3344455556667778899999999999966442111 11122222 344556999999999998888
Q ss_pred EECCCcEEEEeCCCCeEEEEe------------ccCCCCeEEEEEcCC-CCEEEEEeCCCeEEEEEcCCCCceeEEee--
Q 003236 573 GGHDKKAVLWCTESFTVKSTL------------EEHTQWITDVRFSPS-LSRLATSSADRTVRVWDTENPDYSLRTFT-- 637 (837)
Q Consensus 573 gs~Dg~I~VWd~~t~~~~~~l------------~~h~~~I~~l~fspd-g~~Latgs~Dg~I~IWDl~~~~~~~~~~~-- 637 (837)
.+..-.++|+|-+........ ++|...++|.+|+|+ ...++|++.||+++|||+...+.....+.
T Consensus 232 vsg~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k 311 (641)
T KOG0772|consen 232 VSGSAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTK 311 (641)
T ss_pred EecCcceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeec
Confidence 888889999997665544332 579999999999996 45799999999999999997664343333
Q ss_pred ---ccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeeEE--e--c--CCCeeEEEEecCCCEEEEEEcCCeEEE
Q 003236 638 ---GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVF--K--C--QSGATQMRFQPRLGRILAAAIENYISI 708 (837)
Q Consensus 638 ---~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~--~--~--~~~i~sl~~sp~g~~llags~dg~I~i 708 (837)
+..-.+++++|++++.. |++|..||.|.+|+.........+ . | ...|+|+.|+++|++|++-+.|+.+++
T Consensus 312 ~~~g~Rv~~tsC~~nrdg~~-iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKv 390 (641)
T KOG0772|consen 312 PAGGKRVPVTSCAWNRDGKL-IAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKV 390 (641)
T ss_pred cCCCcccCceeeecCCCcch-hhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCceee
Confidence 23457899999999885 778888999999998653322222 1 2 347999999999999999999999999
Q ss_pred EECCCC-eEEEEEcCC--CCCEEEEEEcCCCCEEEEEe-------CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeC
Q 003236 709 LDVETQ-VCRLKLQGH--KNQVHSVCWNTSGEYLASVS-------DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHP 778 (837)
Q Consensus 709 wDl~s~-~~~~~l~~h--~~~V~sl~~spdg~~Lasgs-------Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fsp 778 (837)
||++.. +++....+- ..+-+.++|+|+.++|++|+ .+.+.+||..+. ..+..+......|..|.|+|
T Consensus 391 WDLrq~kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~---d~v~ki~i~~aSvv~~~Whp 467 (641)
T KOG0772|consen 391 WDLRQFKKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTL---DTVYKIDISTASVVRCLWHP 467 (641)
T ss_pred eeccccccchhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccce---eeEEEecCCCceEEEEeecc
Confidence 999975 566555543 33567899999999999986 247999998877 67777777788999999999
Q ss_pred CCCEEEEEEcCCeEEEE
Q 003236 779 TFPSLLVIGCYETLELW 795 (837)
Q Consensus 779 dg~~L~sgs~dg~I~Iw 795 (837)
.-+.|++++.||.++||
T Consensus 468 kLNQi~~gsgdG~~~vy 484 (641)
T KOG0772|consen 468 KLNQIFAGSGDGTAHVY 484 (641)
T ss_pred hhhheeeecCCCceEEE
Confidence 99999999999998887
|
|
| >KOG1273 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.2e-23 Score=212.62 Aligned_cols=277 Identities=20% Similarity=0.310 Sum_probs=221.5
Q ss_pred eEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeEEee
Q 003236 558 VESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFT 637 (837)
Q Consensus 558 V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~~~~~~~~~~ 637 (837)
-.|+.|++.|.+||+|+.||.|.|||+.+...-+.+.+|..+|++++|++||+.|+|+|.|..|.+||+..+.. +..+.
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~-l~rir 104 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSP-LKRIR 104 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCc-eeEEE
Confidence 78999999999999999999999999999998899999999999999999999999999999999999998873 44443
Q ss_pred ccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeeEEec-----CCCeeEEEEecCCCEEEEEEcCCeEEEEECC
Q 003236 638 GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-----QSGATQMRFQPRLGRILAAAIENYISILDVE 712 (837)
Q Consensus 638 ~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~-----~~~i~sl~~sp~g~~llags~dg~I~iwDl~ 712 (837)
...+|+.+.|+|.+.+.++++-.+..-.+.++..++....-.. +....+..|.+.|++|++|...|.+.+||..
T Consensus 105 -f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a~ 183 (405)
T KOG1273|consen 105 -FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDAE 183 (405)
T ss_pred -ccCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccCCCCEEEEecCcceEEEEecc
Confidence 5789999999998777776666565566666654322211111 1123445689999999999999999999999
Q ss_pred CCeEEEEEcCCC-CCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCC------CceeEEEee--cCCCceEEEEEeCCCCE
Q 003236 713 TQVCRLKLQGHK-NQVHSVCWNTSGEYLASVS-DELVRVWSIGSGS------KGECIHELS--CTGNKFHSCVFHPTFPS 782 (837)
Q Consensus 713 s~~~~~~l~~h~-~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~------~~~~i~~~~--~~~~~I~sv~fspdg~~ 782 (837)
+.+++..++-.. ..|..+.|+..|++|+.-+ |..||.|++..-. ..+..+++. .....-.+|+|+.+|.|
T Consensus 184 t~e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~dgeY 263 (405)
T KOG1273|consen 184 TLECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSGDGEY 263 (405)
T ss_pred hheeeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhheeecCCccE
Confidence 999998888665 7899999999999999877 9999999987321 111111111 12334578999999999
Q ss_pred EEEEEcCC-eEEEEECCCCcEEE-eccCC-CCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 003236 783 LLVIGCYE-TLELWNMTENKTLT-LSAHD-KLVSSLAASTVNGMVASASHDKCVKIWK 837 (837)
Q Consensus 783 L~sgs~dg-~I~IwDl~s~~~~~-l~~h~-~~V~sla~spdg~~LaSgs~DG~I~IWd 837 (837)
+++++... .++||....|.+++ +.+.. .....+.|+|-...|++- ..|.|+||.
T Consensus 264 v~a~s~~aHaLYIWE~~~GsLVKILhG~kgE~l~DV~whp~rp~i~si-~sg~v~iw~ 320 (405)
T KOG1273|consen 264 VCAGSARAHALYIWEKSIGSLVKILHGTKGEELLDVNWHPVRPIIASI-ASGVVYIWA 320 (405)
T ss_pred EEeccccceeEEEEecCCcceeeeecCCchhheeecccccceeeeeec-cCCceEEEE
Confidence 98887543 89999999999884 44555 568899999998888887 779999994
|
|
| >KOG0294 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.92 E-value=5.8e-23 Score=210.03 Aligned_cols=259 Identities=19% Similarity=0.310 Sum_probs=208.8
Q ss_pred EEEEECCCcEEEEeCCC------------CeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeEEee
Q 003236 570 LATGGHDKKAVLWCTES------------FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFT 637 (837)
Q Consensus 570 Lasgs~Dg~I~VWd~~t------------~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~~~~~~~~~~ 637 (837)
|++|++...|.-+++.. ...+..+..|.+.|++++.+ +.++|+||.|-+|+|||+..... +..+.
T Consensus 4 iIvGtYE~~i~Gf~l~~~~~~~~~s~~~~l~~lF~~~aH~~sitavAVs--~~~~aSGssDetI~IYDm~k~~q-lg~ll 80 (362)
T KOG0294|consen 4 IIVGTYEHVILGFKLDPEPKGCTDSVKPTLKPLFAFSAHAGSITALAVS--GPYVASGSSDETIHIYDMRKRKQ-LGILL 80 (362)
T ss_pred EEEeeeeeEEEEEEeccCccccccccceeeeccccccccccceeEEEec--ceeEeccCCCCcEEEEeccchhh-hccee
Confidence 56677776666665432 22345677899999999985 78999999999999999997554 77888
Q ss_pred ccccceEEEEEcCCCC-eEEEEEeCCCcEEEEECCCCeeeeEEec-CCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCe
Q 003236 638 GHSTTVMSLDFHPSKE-DLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAIENYISILDVETQV 715 (837)
Q Consensus 638 ~h~~~V~sl~fspdg~-~llasgs~Dg~I~vwDl~t~~~i~~~~~-~~~i~sl~~sp~g~~llags~dg~I~iwDl~s~~ 715 (837)
.|.+.|+++.|.+.-. .-|++|+.||.|.+|+....+++..++. .+.|+.++++|.++..++.+.|+.+++||+-.++
T Consensus 81 ~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr 160 (362)
T KOG0294|consen 81 SHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGR 160 (362)
T ss_pred ccccceEEEEecCCcchhheeeecCCCcEEEEEcCCeEEeeeecccccccceeEecCCCceEEEEcCCceeeeehhhcCc
Confidence 8999999999998743 1344999999999999999999999885 4569999999999999999999999999999887
Q ss_pred EEEEEcCCCCCEEEEEEcCCCCEEEEEeCCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEE
Q 003236 716 CRLKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELW 795 (837)
Q Consensus 716 ~~~~l~~h~~~V~sl~~spdg~~LasgsDg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fspdg~~L~sgs~dg~I~Iw 795 (837)
.-+.+. -...-+.|.|+|.|.+++.+....|-||.+.+.. .+.++. ....+.++.|. ++..|++|+.|+.|.+|
T Consensus 161 ~a~v~~-L~~~at~v~w~~~Gd~F~v~~~~~i~i~q~d~A~---v~~~i~-~~~r~l~~~~l-~~~~L~vG~d~~~i~~~ 234 (362)
T KOG0294|consen 161 VAFVLN-LKNKATLVSWSPQGDHFVVSGRNKIDIYQLDNAS---VFREIE-NPKRILCATFL-DGSELLVGGDNEWISLK 234 (362)
T ss_pred cceeec-cCCcceeeEEcCCCCEEEEEeccEEEEEecccHh---Hhhhhh-ccccceeeeec-CCceEEEecCCceEEEe
Confidence 665554 2233455999999999999887889999988752 222222 22445666665 45579999999999999
Q ss_pred ECCCCcEE-EeccCCCCeeEEEEe--CCCCEEEEEECCCcEEEeC
Q 003236 796 NMTENKTL-TLSAHDKLVSSLAAS--TVNGMVASASHDKCVKIWK 837 (837)
Q Consensus 796 Dl~s~~~~-~l~~h~~~V~sla~s--pdg~~LaSgs~DG~I~IWd 837 (837)
|.++..+. .+.+|...|.++.+- |++.+|+|++.||.|+|||
T Consensus 235 D~ds~~~~~~~~AH~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd 279 (362)
T KOG0294|consen 235 DTDSDTPLTEFLAHENRVKDIASYTNPEHEYLVTASSDGFIKVWD 279 (362)
T ss_pred ccCCCccceeeecchhheeeeEEEecCCceEEEEeccCceEEEEE
Confidence 99987776 778999999999853 5678999999999999997
|
|
| >KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.92 E-value=3.7e-23 Score=229.58 Aligned_cols=260 Identities=18% Similarity=0.304 Sum_probs=223.5
Q ss_pred CeEEcccCCCceEEeecCCCCCCCCccccccccCCCeeeeEEEEecCCCCCeEE-EEEcC-CCCEEEEEECCCcEEEEeC
Q 003236 507 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVES-CHFSP-DGKLLATGGHDKKAVLWCT 584 (837)
Q Consensus 507 ~~v~~Gs~D~~v~~w~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~H~~~V~s-l~fSp-dg~~Lasgs~Dg~I~VWd~ 584 (837)
..+.++|.|+++++|.-.+ ..+.+...+.+|.+-|.+ ++|-+ ++-.|++|+.|++|.+|..
T Consensus 26 ~~i~s~sRd~t~~vw~~~~-----------------~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v~~~ 88 (745)
T KOG0301|consen 26 VCIISGSRDGTVKVWAKKG-----------------KQYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDTTIIVFKL 88 (745)
T ss_pred eEEeecCCCCceeeeeccC-----------------cccccceecccCcceeeccceeccccCcceEeecccceEEEEec
Confidence 3588899999999995433 334455677788888888 88886 5557999999999999999
Q ss_pred CCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeEEeeccccceEEEEEcCCCCeEEEEEeCCCc
Q 003236 585 ESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSE 664 (837)
Q Consensus 585 ~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~ 664 (837)
....++.++.+|...|+|+....++. +++||+|.+++||.... +...+.+|...|+++++.|++ .+++|+.|.+
T Consensus 89 ~~~~P~~~LkgH~snVC~ls~~~~~~-~iSgSWD~TakvW~~~~---l~~~l~gH~asVWAv~~l~e~--~~vTgsaDKt 162 (745)
T KOG0301|consen 89 SQAEPLYTLKGHKSNVCSLSIGEDGT-LISGSWDSTAKVWRIGE---LVYSLQGHTASVWAVASLPEN--TYVTGSADKT 162 (745)
T ss_pred CCCCchhhhhccccceeeeecCCcCc-eEecccccceEEecchh---hhcccCCcchheeeeeecCCC--cEEeccCcce
Confidence 99999999999999999999888877 99999999999998875 345589999999999999986 5669999999
Q ss_pred EEEEECCCCeeeeEEec-CCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEe
Q 003236 665 IRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS 743 (837)
Q Consensus 665 I~vwDl~t~~~i~~~~~-~~~i~sl~~sp~g~~llags~dg~I~iwDl~s~~~~~~l~~h~~~V~sl~~spdg~~Lasgs 743 (837)
|++|.- ++++.+|.. ...|..+++-++ ..|++++.||.|++|++ +++++.+..+|.+.|+++....++..+++++
T Consensus 163 IklWk~--~~~l~tf~gHtD~VRgL~vl~~-~~flScsNDg~Ir~w~~-~ge~l~~~~ghtn~vYsis~~~~~~~Ivs~g 238 (745)
T KOG0301|consen 163 IKLWKG--GTLLKTFSGHTDCVRGLAVLDD-SHFLSCSNDGSIRLWDL-DGEVLLEMHGHTNFVYSISMALSDGLIVSTG 238 (745)
T ss_pred eeeccC--CchhhhhccchhheeeeEEecC-CCeEeecCCceEEEEec-cCceeeeeeccceEEEEEEecCCCCeEEEec
Confidence 999976 677777775 455888888876 56889999999999999 7899999999999999999777778888888
Q ss_pred -CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCC
Q 003236 744 -DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTE 799 (837)
Q Consensus 744 -Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fspdg~~L~sgs~dg~I~IwDl~s 799 (837)
|++++||+.. +|...+......|+++.+-++|+ |++|++||.|+||....
T Consensus 239 EDrtlriW~~~-----e~~q~I~lPttsiWsa~~L~NgD-Ivvg~SDG~VrVfT~~k 289 (745)
T KOG0301|consen 239 EDRTLRIWKKD-----ECVQVITLPTTSIWSAKVLLNGD-IVVGGSDGRVRVFTVDK 289 (745)
T ss_pred CCceEEEeecC-----ceEEEEecCccceEEEEEeeCCC-EEEeccCceEEEEEecc
Confidence 9999999875 67777777777999999999987 99999999999998764
|
|
| >KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.91 E-value=3e-24 Score=222.56 Aligned_cols=267 Identities=16% Similarity=0.243 Sum_probs=225.2
Q ss_pred CeEEcccCCCceEEeecCCCCCCCCccccccccCCCeeeeEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCC
Q 003236 507 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES 586 (837)
Q Consensus 507 ~~v~~Gs~D~~v~~w~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~H~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t 586 (837)
..+++|+.||.|++|..... .++.++.+|.+.|..|+++. ..+++++.|++|+.|.++.
T Consensus 80 s~~aSGs~DG~VkiWnlsqR-------------------~~~~~f~AH~G~V~Gi~v~~--~~~~tvgdDKtvK~wk~~~ 138 (433)
T KOG0268|consen 80 STVASGSCDGEVKIWNLSQR-------------------ECIRTFKAHEGLVRGICVTQ--TSFFTVGDDKTVKQWKIDG 138 (433)
T ss_pred hhhhccccCceEEEEehhhh-------------------hhhheeecccCceeeEEecc--cceEEecCCcceeeeeccC
Confidence 35789999999999955332 35678899999999999986 6788999999999998775
Q ss_pred CeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeEEeeccccceEEEEEcCCCCeEEEEEeCCCcEE
Q 003236 587 FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIR 666 (837)
Q Consensus 587 ~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~ 666 (837)
....++. ....+..|.-+..+..++||+.+ |.|||..... ++..+.-....|.++.|+|....+|++|+.|+.|.
T Consensus 139 -~p~~til-g~s~~~gIdh~~~~~~FaTcGe~--i~IWD~~R~~-Pv~smswG~Dti~svkfNpvETsILas~~sDrsIv 213 (433)
T KOG0268|consen 139 -PPLHTIL-GKSVYLGIDHHRKNSVFATCGEQ--IDIWDEQRDN-PVSSMSWGADSISSVKFNPVETSILASCASDRSIV 213 (433)
T ss_pred -Ccceeee-ccccccccccccccccccccCce--eeecccccCC-ccceeecCCCceeEEecCCCcchheeeeccCCceE
Confidence 3666664 34567777777777889998765 9999998643 57777777788999999999999999999999999
Q ss_pred EEECCCCeeeeEEecCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCC-eEEEEEcCCCCCEEEEEEcCCCCEEEEEe-C
Q 003236 667 YWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQ-VCRLKLQGHKNQVHSVCWNTSGEYLASVS-D 744 (837)
Q Consensus 667 vwDl~t~~~i~~~~~~~~i~sl~~sp~g~~llags~dg~I~iwDl~s~-~~~~~l~~h~~~V~sl~~spdg~~Lasgs-D 744 (837)
+||++.+.++..+...-..+.|+|+|..-.++++.+|..++.||++.- .++..+.+|.+.|.+++|+|.|.-+++|+ |
T Consensus 214 LyD~R~~~Pl~KVi~~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsptG~EfvsgsyD 293 (433)
T KOG0268|consen 214 LYDLRQASPLKKVILTMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSPTGQEFVSGSYD 293 (433)
T ss_pred EEecccCCccceeeeeccccceecCccccceeeccccccceehhhhhhcccchhhcccceeEEEeccCCCcchhcccccc
Confidence 999999999999988888999999998777888999999999999975 67788889999999999999999999999 9
Q ss_pred CeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCc
Q 003236 745 ELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENK 801 (837)
Q Consensus 745 g~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fspdg~~L~sgs~dg~I~IwDl~s~~ 801 (837)
.+|+||.++.+......++. .-..|.++.|+-|..+|++|+.|+.|++|.....+
T Consensus 294 ksIRIf~~~~~~SRdiYhtk--RMq~V~~Vk~S~Dskyi~SGSdd~nvRlWka~Ase 348 (433)
T KOG0268|consen 294 KSIRIFPVNHGHSRDIYHTK--RMQHVFCVKYSMDSKYIISGSDDGNVRLWKAKASE 348 (433)
T ss_pred ceEEEeecCCCcchhhhhHh--hhheeeEEEEeccccEEEecCCCcceeeeecchhh
Confidence 99999999877432222221 13468999999999999999999999999875443
|
|
| >KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.7e-22 Score=205.65 Aligned_cols=276 Identities=18% Similarity=0.258 Sum_probs=214.4
Q ss_pred cccCCCCCceEEEEecCCCCCcccCCCccccCCCeEEcccCCCceEEeecCCCCCCCCccccccccCCCeeeeEEEEecC
Q 003236 474 LQHNGASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPA 553 (837)
Q Consensus 474 ~~~~~s~~~s~~~~~~~~~~~~~~~~~~l~~~~~~v~~Gs~D~~v~~w~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~ 553 (837)
+..++.++.+.+.|++. .+.+++.||-|++||+|...+.... . -+....
T Consensus 22 v~~pP~DsIS~l~FSP~--------------~~~~~~A~SWD~tVR~wevq~~g~~---------------~--~ka~~~ 70 (347)
T KOG0647|consen 22 VPNPPEDSISALAFSPQ--------------ADNLLAAGSWDGTVRIWEVQNSGQL---------------V--PKAQQS 70 (347)
T ss_pred cCCCcccchheeEeccc--------------cCceEEecccCCceEEEEEecCCcc---------------c--chhhhc
Confidence 33444556677777772 3478889999999999977654211 0 133457
Q ss_pred CCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEeccCCCCeEEEEEcCCCC--EEEEEeCCCeEEEEEcCCCCc
Q 003236 554 STSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLS--RLATSSADRTVRVWDTENPDY 631 (837)
Q Consensus 554 H~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~I~~l~fspdg~--~Latgs~Dg~I~IWDl~~~~~ 631 (837)
|.++|.+++|+.||..+++|+.|+.+++||+.++. ...+..|.++|.++.|-+... .|+|||.|++|+.||.+....
T Consensus 71 ~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~Q-~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~p 149 (347)
T KOG0647|consen 71 HDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASGQ-VSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNP 149 (347)
T ss_pred cCCCeEEEEEccCCceEEeeccCCceEEEEccCCC-eeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCe
Confidence 99999999999999999999999999999999984 456668999999999988655 899999999999999997553
Q ss_pred eeEEeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeeE-Ee--cCCCeeEEEEecCCCEEEEEEcCCeEEE
Q 003236 632 SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGV-FK--CQSGATQMRFQPRLGRILAAAIENYISI 708 (837)
Q Consensus 632 ~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~-~~--~~~~i~sl~~sp~g~~llags~dg~I~i 708 (837)
+..+. ..+.|++++.- ..+++.+..+..|.+|+++++..... .. ..-.+.|+++..+....+.|+-+|.+.|
T Consensus 150 -v~t~~-LPeRvYa~Dv~---~pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~i 224 (347)
T KOG0647|consen 150 -VATLQ-LPERVYAADVL---YPMAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAI 224 (347)
T ss_pred -eeeee-ccceeeehhcc---CceeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecceEEE
Confidence 44443 34667777765 23666777799999999986543322 11 2345889999999888999999999999
Q ss_pred EECCCC--eEEEEEcCCCC---------CEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEE
Q 003236 709 LDVETQ--VCRLKLQGHKN---------QVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVF 776 (837)
Q Consensus 709 wDl~s~--~~~~~l~~h~~---------~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~f 776 (837)
..+..+ +.-..|+.|.. .|++|+|+|....|++++ ||++.+||-... ..+.+...+..+|+++.|
T Consensus 225 q~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar---~kLk~s~~~~qpItcc~f 301 (347)
T KOG0647|consen 225 QYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDAR---TKLKTSETHPQPITCCSF 301 (347)
T ss_pred EecCCCCccCceeEEEeccCCCCCCceEEecceEeecccceEEEecCCceEEEecchhh---hhhhccCcCCCccceeEe
Confidence 988876 44556666652 577899999877777765 999999998766 566677788999999999
Q ss_pred eCCCCEEEEEEcC
Q 003236 777 HPTFPSLLVIGCY 789 (837)
Q Consensus 777 spdg~~L~sgs~d 789 (837)
+.+|.+++.+.+.
T Consensus 302 n~~G~ifaYA~gY 314 (347)
T KOG0647|consen 302 NRNGSIFAYALGY 314 (347)
T ss_pred cCCCCEEEEEeec
Confidence 9999988876553
|
|
| >KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.91 E-value=5.2e-22 Score=204.02 Aligned_cols=247 Identities=19% Similarity=0.276 Sum_probs=203.5
Q ss_pred CeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeEEeeccccceEEEEEcCCCCeEEEEEe-CCCcE
Q 003236 587 FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCD-NNSEI 665 (837)
Q Consensus 587 ~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~sl~fspdg~~llasgs-~Dg~I 665 (837)
.+..+.+......|+++.|+++|.+|++++.|.+|+|||..+++. ++++..+...|..++|......++.+.. .|.+|
T Consensus 4 ~~~ak~f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~-~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tI 82 (311)
T KOG1446|consen 4 FRPAKVFRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQ-VKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTI 82 (311)
T ss_pred cccccccccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCce-eeEeecccccccEEEEecCCceEEEccCCCCCce
Confidence 344556666778999999999999999999999999999998775 7777778788899999876665554433 48899
Q ss_pred EEEECCCCeeeeEEecC-CCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEe-
Q 003236 666 RYWSINNGSCAGVFKCQ-SGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS- 743 (837)
Q Consensus 666 ~vwDl~t~~~i~~~~~~-~~i~sl~~sp~g~~llags~dg~I~iwDl~s~~~~~~l~~h~~~V~sl~~spdg~~Lasgs- 743 (837)
++.++.+.+.++.|..+ ..|..++.+|.+..+++++.|++|++||++..++...+..... ..++|+|.|-++|++.
T Consensus 83 ryLsl~dNkylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~--pi~AfDp~GLifA~~~~ 160 (311)
T KOG1446|consen 83 RYLSLHDNKYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSGR--PIAAFDPEGLIFALANG 160 (311)
T ss_pred EEEEeecCceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEecCCC--cceeECCCCcEEEEecC
Confidence 99999999999999864 5699999999999999999999999999998877766653333 3578999999999998
Q ss_pred CCeEEEEEcCCCCCceeEEEee---cCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE-EeccCCCC---eeEEE
Q 003236 744 DELVRVWSIGSGSKGECIHELS---CTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKL---VSSLA 816 (837)
Q Consensus 744 Dg~I~IwDl~s~~~~~~i~~~~---~~~~~I~sv~fspdg~~L~sgs~dg~I~IwDl~s~~~~-~l~~h~~~---V~sla 816 (837)
.+.|++||+++-.+ .+..++. ....+.+.+.|+|||++|+.++..+.+++.|.-+|... .+..+... --..+
T Consensus 161 ~~~IkLyD~Rs~dk-gPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~ 239 (311)
T KOG1446|consen 161 SELIKLYDLRSFDK-GPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLPLSAT 239 (311)
T ss_pred CCeEEEEEecccCC-CCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCcceeEE
Confidence 44999999998643 2233332 34678899999999999999999999999999999877 44444322 25678
Q ss_pred EeCCCCEEEEEECCCcEEEeC
Q 003236 817 ASTVNGMVASASHDKCVKIWK 837 (837)
Q Consensus 817 ~spdg~~LaSgs~DG~I~IWd 837 (837)
|+||+++|++|+.||+|.||+
T Consensus 240 ftPds~Fvl~gs~dg~i~vw~ 260 (311)
T KOG1446|consen 240 FTPDSKFVLSGSDDGTIHVWN 260 (311)
T ss_pred ECCCCcEEEEecCCCcEEEEE
Confidence 999999999999999999996
|
|
| >KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.91 E-value=4.9e-23 Score=224.81 Aligned_cols=291 Identities=18% Similarity=0.232 Sum_probs=234.5
Q ss_pred CCeeeeEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEeccCCCCeEEEEEcCCCC--EEEEEeCC
Q 003236 541 KGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLS--RLATSSAD 618 (837)
Q Consensus 541 ~g~~~~~~~~l~~H~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~I~~l~fspdg~--~Latgs~D 618 (837)
..++..+...+++|++.|.||...|.|.+||+|+.||+|+||.+.+++++.++. ..+.|.||+|+|.+. .||++-.+
T Consensus 386 rPFPt~~~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~-~d~~I~~vaw~P~~~~~vLAvA~~~ 464 (733)
T KOG0650|consen 386 RPFPTRCALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQ-FDSEIRSVAWNPLSDLCVLAVAVGE 464 (733)
T ss_pred CCCcceeeeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEe-ecceeEEEEecCCCCceeEEEEecC
Confidence 346666777899999999999999999999999999999999999999999885 566899999999654 34444333
Q ss_pred CeEEEEEcCCC------------------------------------CceeEEeeccccceEEEEEcCCCCeEEEEEeC-
Q 003236 619 RTVRVWDTENP------------------------------------DYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDN- 661 (837)
Q Consensus 619 g~I~IWDl~~~------------------------------------~~~~~~~~~h~~~V~sl~fspdg~~llasgs~- 661 (837)
.+.|.+..-+ ..-++....|...|..+.|+..|+++..++..
T Consensus 465 -~~~ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~ 543 (733)
T KOG0650|consen 465 -CVLIVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDS 543 (733)
T ss_pred -ceEEeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCC
Confidence 3444432211 11133455688899999999999977655543
Q ss_pred -CCcEEEEECCCCeeeeEEe-cCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEcCCCCEE
Q 003236 662 -NSEIRYWSINNGSCAGVFK-CQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYL 739 (837)
Q Consensus 662 -Dg~I~vwDl~t~~~i~~~~-~~~~i~sl~~sp~g~~llags~dg~I~iwDl~s~~~~~~l~~h~~~V~sl~~spdg~~L 739 (837)
...|.|.++........|. ..+.+.++.|+|...++++++. ..|+|||+.....++.+.....+|.+++++|.|..|
T Consensus 544 ~~~~VliHQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaTq-~~vRiYdL~kqelvKkL~tg~kwiS~msihp~GDnl 622 (733)
T KOG0650|consen 544 GNKSVLIHQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVATQ-RSVRIYDLSKQELVKKLLTGSKWISSMSIHPNGDNL 622 (733)
T ss_pred CcceEEEEecccccccCchhhcCCceeEEEecCCCceEEEEec-cceEEEehhHHHHHHHHhcCCeeeeeeeecCCCCeE
Confidence 3578999998877776664 4577999999999887777664 789999999988888877778899999999999999
Q ss_pred EEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEEC------CCC-cEE---EeccC
Q 003236 740 ASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNM------TEN-KTL---TLSAH 808 (837)
Q Consensus 740 asgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fspdg~~L~sgs~dg~I~IwDl------~s~-~~~---~l~~h 808 (837)
++++ |+.+..||+.-.. +...++..|...+++++|++....+++++.|+++.||.- -.+ .++ .+.+|
T Consensus 623 i~gs~d~k~~WfDldlss--kPyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L~gH 700 (733)
T KOG0650|consen 623 ILGSYDKKMCWFDLDLSS--KPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVFHGMVYNDLLQNPLIVPLKRLRGH 700 (733)
T ss_pred EEecCCCeeEEEEcccCc--chhHHhhhhhhhhhhhhhccccceeeeecCCCcEEEEeeeeehhhhcCCceEeeeeccCc
Confidence 9998 9999999998664 567788889999999999999999999999998888742 112 222 56788
Q ss_pred CCC----eeEEEEeCCCCEEEEEECCCcEEEe
Q 003236 809 DKL----VSSLAASTVNGMVASASHDKCVKIW 836 (837)
Q Consensus 809 ~~~----V~sla~spdg~~LaSgs~DG~I~IW 836 (837)
... |..+.|+|.-.+|++++.||+|++|
T Consensus 701 ~~~~~~gVLd~~wHP~qpWLfsAGAd~tirlf 732 (733)
T KOG0650|consen 701 EKTNDLGVLDTIWHPRQPWLFSAGADGTIRLF 732 (733)
T ss_pred eeecccceEeecccCCCceEEecCCCceEEee
Confidence 665 8999999999999999999999999
|
|
| >KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.9e-23 Score=206.76 Aligned_cols=247 Identities=21% Similarity=0.290 Sum_probs=203.8
Q ss_pred cCCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCC---eEEEEeccCCCCeEEEEEcC--CCCEEEEEeCCCeEEEEEc
Q 003236 552 PASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESF---TVKSTLEEHTQWITDVRFSP--SLSRLATSSADRTVRVWDT 626 (837)
Q Consensus 552 ~~H~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~---~~~~~l~~h~~~I~~l~fsp--dg~~Latgs~Dg~I~IWDl 626 (837)
..|.+.|..+...--|+.|||++.|++|+||.+.+. ..+.++.+|.++|+.++|.. -|.+||++++||.|.||.-
T Consensus 8 t~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke 87 (299)
T KOG1332|consen 8 TQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKE 87 (299)
T ss_pred hhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEec
Confidence 479999999998889999999999999999998753 57889999999999999976 6999999999999999999
Q ss_pred CCCCc-eeEEeeccccceEEEEEcCCC-CeEEEEEeCCCcEEEEECCCC--eee--eEEecCCCeeEEEEecC---C---
Q 003236 627 ENPDY-SLRTFTGHSTTVMSLDFHPSK-EDLLCSCDNNSEIRYWSINNG--SCA--GVFKCQSGATQMRFQPR---L--- 694 (837)
Q Consensus 627 ~~~~~-~~~~~~~h~~~V~sl~fspdg-~~llasgs~Dg~I~vwDl~t~--~~i--~~~~~~~~i~sl~~sp~---g--- 694 (837)
+++.. ....+..|...|++++|.|.+ ..+|++++.||.|.|.+++.. -.. ..+.+.-++++++|.|. |
T Consensus 88 ~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~~ 167 (299)
T KOG1332|consen 88 ENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSLV 167 (299)
T ss_pred CCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCcccc
Confidence 88754 235667899999999999975 446778889999999998764 111 22234567999999986 4
Q ss_pred --------CEEEEEEcCCeEEEEECCCC--eEEEEEcCCCCCEEEEEEcCCC----CEEEEEe-CCeEEEEEcCCCCCce
Q 003236 695 --------GRILAAAIENYISILDVETQ--VCRLKLQGHKNQVHSVCWNTSG----EYLASVS-DELVRVWSIGSGSKGE 759 (837)
Q Consensus 695 --------~~llags~dg~I~iwDl~s~--~~~~~l~~h~~~V~sl~~spdg----~~Lasgs-Dg~I~IwDl~s~~~~~ 759 (837)
+.|++|+.|+.|+||+..++ +...++.+|.+.|+.++|.|.- .+|++++ ||+|.||..+.....-
T Consensus 168 ~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e~w 247 (299)
T KOG1332|consen 168 DQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYEPW 247 (299)
T ss_pred ccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecCccCcc
Confidence 56999999999999999875 3445588999999999999964 5799999 9999999987442222
Q ss_pred eEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECC
Q 003236 760 CIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMT 798 (837)
Q Consensus 760 ~i~~~~~~~~~I~sv~fspdg~~L~sgs~dg~I~IwDl~ 798 (837)
....++.....+..+.|+..|..|++++.|+.|.+|.-.
T Consensus 248 k~tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke~ 286 (299)
T KOG1332|consen 248 KKTLLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWKEN 286 (299)
T ss_pred cccccccCCcceEEEEEeccccEEEEecCCcEEEEEEeC
Confidence 333344456789999999999999999999999999643
|
|
| >KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription] | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.1e-22 Score=223.43 Aligned_cols=335 Identities=20% Similarity=0.264 Sum_probs=248.4
Q ss_pred CCccccCCCeEEcccCCCceEEeecCCCCCCC--CccccccccCCCeeee---EE-------EEecCCCCCeEEEEEcCC
Q 003236 499 PNQLTDMDRFVDDGSLDDNVESFLSPDDADPR--DRVGRSAEVGKGFTFT---EF-------QLIPASTSKVESCHFSPD 566 (837)
Q Consensus 499 ~~~l~~~~~~v~~Gs~D~~v~~w~s~~~~~~~--~~~~~~~~~~~g~~~~---~~-------~~l~~H~~~V~sl~fSpd 566 (837)
...+...+.+++++|-|..|++|......+.. .+........+...+. ++ ..+-||.+.|.++.|+|+
T Consensus 199 f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eall~GHeDWV~sv~W~p~ 278 (764)
T KOG1063|consen 199 FARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFEALLMGHEDWVYSVWWHPE 278 (764)
T ss_pred hhccCCCcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEehhhhhcCcccceEEEEEccc
Confidence 33344467899999999999999443322111 1100000011111111 12 345599999999999999
Q ss_pred CCEEEEEECCCcEEEEeCCCC--eEEE--E---eccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCc--eeEEee
Q 003236 567 GKLLATGGHDKKAVLWCTESF--TVKS--T---LEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDY--SLRTFT 637 (837)
Q Consensus 567 g~~Lasgs~Dg~I~VWd~~t~--~~~~--~---l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~~~~--~~~~~~ 637 (837)
+..|++++.|+++.||..++. --+. . ..+.....+...|+|+++.+++-+..|-.++|...+... ....+.
T Consensus 279 ~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~hlWkt~d~~~w~~~~~iS 358 (764)
T KOG1063|consen 279 GLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGGFHLWKTKDKTFWTQEPVIS 358 (764)
T ss_pred hhhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEecccCcEEEEeccCccceeeccccc
Confidence 999999999999999976543 2222 2 233455689999999999999999999999999433222 235678
Q ss_pred ccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCe-----eeeEEecCCCeeEEEEecCCCEEEEEEcCCeEEEEECC
Q 003236 638 GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS-----CAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVE 712 (837)
Q Consensus 638 ~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~-----~i~~~~~~~~i~sl~~sp~g~~llags~dg~I~iwDl~ 712 (837)
||...|.+++|+|.|++++ +.+.|-+-++|-.-..+ ..+.-.+...++|+++-+..-.+++|+.+..+++|+..
T Consensus 359 GH~~~V~dv~W~psGeflL-svs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn~~~~FVSgAdEKVlRvF~aP 437 (764)
T KOG1063|consen 359 GHVDGVKDVDWDPSGEFLL-SVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFVNEDLQFVSGADEKVLRVFEAP 437 (764)
T ss_pred cccccceeeeecCCCCEEE-EeccccceeeecccccccceeeecccccccccceeeehccCCceeeecccceeeeeecCc
Confidence 9999999999999998555 88889999988654111 11111235568899998865677778888888888542
Q ss_pred C-------------------------------------------CeE---------------------------------
Q 003236 713 T-------------------------------------------QVC--------------------------------- 716 (837)
Q Consensus 713 s-------------------------------------------~~~--------------------------------- 716 (837)
. +..
T Consensus 438 k~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPE 517 (764)
T KOG1063|consen 438 KSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQQNTLWPE 517 (764)
T ss_pred HHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhccCCChHHHHHHhccchh
Confidence 1 000
Q ss_pred EEEEcCCCCCEEEEEEcCCCCEEEEEe-C-----CeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCC
Q 003236 717 RLKLQGHKNQVHSVCWNTSGEYLASVS-D-----ELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYE 790 (837)
Q Consensus 717 ~~~l~~h~~~V~sl~~spdg~~Lasgs-D-----g~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fspdg~~L~sgs~dg 790 (837)
+..+.+|...|++++.+|+++++|++. . ..|++|+..+. ..+..+..|.-.|+.++|+||+++|++.+.|.
T Consensus 518 v~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W---~~~~~L~~HsLTVT~l~FSpdg~~LLsvsRDR 594 (764)
T KOG1063|consen 518 VHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANW---LQVQELEGHSLTVTRLAFSPDGRYLLSVSRDR 594 (764)
T ss_pred hHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccch---hhhheecccceEEEEEEECCCCcEEEEeecCc
Confidence 122347888999999999999999986 2 27999998876 56668889999999999999999999999999
Q ss_pred eEEEEECCCCcEE-----EeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 003236 791 TLELWNMTENKTL-----TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 837 (837)
Q Consensus 791 ~I~IwDl~s~~~~-----~l~~h~~~V~sla~spdg~~LaSgs~DG~I~IWd 837 (837)
++.+|........ ....|...|+++.|+|++.++||+|.|.+|+||.
T Consensus 595 t~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~ 646 (764)
T KOG1063|consen 595 TVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWE 646 (764)
T ss_pred eEEeeeeecccchhhhhccccccceEEEEcccCcccceeEEecCCceEEEEe
Confidence 9999998554433 4678999999999999999999999999999994
|
|
| >KOG1408 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.91 E-value=7.9e-23 Score=226.07 Aligned_cols=245 Identities=21% Similarity=0.348 Sum_probs=213.3
Q ss_pred CCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEeccCCCCeEEEEEcC---CCCEEEEEeCCCeEEEEEcCCC
Q 003236 553 ASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSP---SLSRLATSSADRTVRVWDTENP 629 (837)
Q Consensus 553 ~H~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~I~~l~fsp---dg~~Latgs~Dg~I~IWDl~~~ 629 (837)
+....|.|++.||+|.+||+|..-|+++||++.+.+....++.|...|.|+.|+. ..++||+++.|..|+|||+..+
T Consensus 457 d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rn 536 (1080)
T KOG1408|consen 457 DSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRN 536 (1080)
T ss_pred CcccceEEEEECCCcceecccCccCceEEEEehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccc
Confidence 4455699999999999999999999999999999999999999999999999986 3678999999999999999987
Q ss_pred CceeEEeeccccceEEEEEcCCC-CeEEEEEeCCCcEEEEECCCCeeeeEEe------cCCCeeEEEEecCCCEEEEEEc
Q 003236 630 DYSLRTFTGHSTTVMSLDFHPSK-EDLLCSCDNNSEIRYWSINNGSCAGVFK------CQSGATQMRFQPRLGRILAAAI 702 (837)
Q Consensus 630 ~~~~~~~~~h~~~V~sl~fspdg-~~llasgs~Dg~I~vwDl~t~~~i~~~~------~~~~i~sl~~sp~g~~llags~ 702 (837)
-..+.++.+|...|+++.|.-.| +.-.++|+.|..|.+--.........|. .+..++.+++.|..+++++++.
T Consensus 537 y~l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQ 616 (1080)
T KOG1408|consen 537 YDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQ 616 (1080)
T ss_pred cchhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCCcceEEEEec
Confidence 77789999999999999998765 3455688889877654333211111111 1356889999999999999999
Q ss_pred CCeEEEEECCCCeEEEEEcC---CCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeC
Q 003236 703 ENYISILDVETQVCRLKLQG---HKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHP 778 (837)
Q Consensus 703 dg~I~iwDl~s~~~~~~l~~---h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fsp 778 (837)
|..|+|||+.+++.++.|++ |++....+..+|.|.||++.. |.++.++|+.++ +|+....+|...|+.+.|.+
T Consensus 617 Drnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sg---EcvA~m~GHsE~VTG~kF~n 693 (1080)
T KOG1408|consen 617 DRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSG---ECVAQMTGHSEAVTGVKFLN 693 (1080)
T ss_pred ccceEEEeccccceeeeecccccCCCceEEEEECCCccEEEEeecCCceEEEEeccc---hhhhhhcCcchheeeeeecc
Confidence 99999999999999999986 667888899999999999877 999999999998 89999999999999999999
Q ss_pred CCCEEEEEEcCCeEEEEECCCC
Q 003236 779 TFPSLLVIGCYETLELWNMTEN 800 (837)
Q Consensus 779 dg~~L~sgs~dg~I~IwDl~s~ 800 (837)
|-++|++.+.||+|.||.+...
T Consensus 694 DCkHlISvsgDgCIFvW~lp~~ 715 (1080)
T KOG1408|consen 694 DCKHLISVSGDGCIFVWKLPLT 715 (1080)
T ss_pred cchhheeecCCceEEEEECchh
Confidence 9999999999999999998653
|
|
| >KOG0289 consensus mRNA splicing factor [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.1e-22 Score=213.12 Aligned_cols=270 Identities=17% Similarity=0.205 Sum_probs=228.3
Q ss_pred CeEEcccCCCceEEeecCCCCCCCCccccccccCCCeeeeEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCC
Q 003236 507 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES 586 (837)
Q Consensus 507 ~~v~~Gs~D~~v~~w~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~H~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t 586 (837)
.++.+|+.|.++.+|+-... ..+.+++||...|+.+.|+++...+++++.|..|+||....
T Consensus 232 ~~ilTGG~d~~av~~d~~s~-------------------q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~ 292 (506)
T KOG0289|consen 232 SKILTGGEDKTAVLFDKPSN-------------------QILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPL 292 (506)
T ss_pred CcceecCCCCceEEEecchh-------------------hhhhhccCcceEEEEEEeccchhheeecCCcceEEeecccc
Confidence 67789999988888844332 33577899999999999999999999999999999999988
Q ss_pred CeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeEEee-ccccceEEEEEcCCCCeEEEEEeCCCcE
Q 003236 587 FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFT-GHSTTVMSLDFHPSKEDLLCSCDNNSEI 665 (837)
Q Consensus 587 ~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~~~~~~~~~~-~h~~~V~sl~fspdg~~llasgs~Dg~I 665 (837)
......+..|.++|+.+..+|.|.||++++.||+..+.|+.++........ ...-.+++++|+|||- +|.+|..|+.|
T Consensus 293 ~s~~~~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgL-ifgtgt~d~~v 371 (506)
T KOG0289|consen 293 SSEPTSSRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGL-IFGTGTPDGVV 371 (506)
T ss_pred ccCccccccccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCce-EEeccCCCceE
Confidence 888888889999999999999999999999999999999998775332222 2234589999999965 88899999999
Q ss_pred EEEECCCCeeeeEEec-CCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEcCC-CCCEEEEEEcCCCCEEEEEe
Q 003236 666 RYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGH-KNQVHSVCWNTSGEYLASVS 743 (837)
Q Consensus 666 ~vwDl~t~~~i~~~~~-~~~i~sl~~sp~g~~llags~dg~I~iwDl~s~~~~~~l~~h-~~~V~sl~~spdg~~Lasgs 743 (837)
+|||+.+...+..|.. .++|..+.|+.+|.++++++.|+.|++||++..+...++... ...|.+++|+..|.+|++++
T Consensus 372 kiwdlks~~~~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD~SGt~L~~~g 451 (506)
T KOG0289|consen 372 KIWDLKSQTNVAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQLDEKKEVNSLSFDQSGTYLGIAG 451 (506)
T ss_pred EEEEcCCccccccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehhhcccceeeccccccceeEEEcCCCCeEEeec
Confidence 9999999988888875 567999999999999999999999999999998777666542 34799999999999999986
Q ss_pred -CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEEC
Q 003236 744 -DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNM 797 (837)
Q Consensus 744 -Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fspdg~~L~sgs~dg~I~IwDl 797 (837)
|=.|++++-.+. ...++..+..|.+..+.+.|.....++++++.|..++++.+
T Consensus 452 ~~l~Vy~~~k~~k-~W~~~~~~~~~sg~st~v~Fg~~aq~l~s~smd~~l~~~a~ 505 (506)
T KOG0289|consen 452 SDLQVYICKKKTK-SWTEIKELADHSGLSTGVRFGEHAQYLASTSMDAILRLYAL 505 (506)
T ss_pred ceeEEEEEecccc-cceeeehhhhcccccceeeecccceEEeeccchhheEEeec
Confidence 556666664432 34677788888888999999999999999999999888764
|
|
| >KOG0269 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.90 E-value=7e-23 Score=229.68 Aligned_cols=274 Identities=19% Similarity=0.359 Sum_probs=216.4
Q ss_pred eEEEEEcCCCCEEEEEECCCcEEEEeCCCC----eEEEEecc---CCCCeEEEEEcC-CCCEEEEEeCCCeEEEEEcCC-
Q 003236 558 VESCHFSPDGKLLATGGHDKKAVLWCTESF----TVKSTLEE---HTQWITDVRFSP-SLSRLATSSADRTVRVWDTEN- 628 (837)
Q Consensus 558 V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~----~~~~~l~~---h~~~I~~l~fsp-dg~~Latgs~Dg~I~IWDl~~- 628 (837)
+.+|...++-.-|++++. ..+.||.+... ++...++. -...+.+|.|.. +.++|||++..|.|.+||+..
T Consensus 42 ~nAIs~nr~~~qiv~AGr-s~lklyai~~~~~~~~~~~~~k~kqn~~~S~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~ 120 (839)
T KOG0269|consen 42 ANAISVNRDINQIVVAGR-SLLKLYAINPNDFSEKCNHRFKTKQNKFYSAADVKWGQLYSNLIATCSTNGVISVWDLNKS 120 (839)
T ss_pred cceEeecCCcceeEEecc-cceeeEeeCcccCCcceeeecccccceeeehhhcccccchhhhheeecCCCcEEEEecCcc
Confidence 456667788777888775 36777765432 22222211 112456788875 478999999999999999986
Q ss_pred -CCceeEEeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeeEEecC-CCeeEEEEecC-CCEEEEEEcCCe
Q 003236 629 -PDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ-SGATQMRFQPR-LGRILAAAIENY 705 (837)
Q Consensus 629 -~~~~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~~-~~i~sl~~sp~-g~~llags~dg~ 705 (837)
....+..|..|...|.+++|++...++|++|+.||+|++||++..+...++... ..|..+.|+|. +.+++++...|.
T Consensus 121 ~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~ 200 (839)
T KOG0269|consen 121 IRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFRSNSESIRDVKFSPGYGNKFASIHDSGY 200 (839)
T ss_pred ccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccccccccccchhhhceeeccCCCceEEEecCCce
Confidence 233466888999999999999999999999999999999999998888877764 45999999995 456777777899
Q ss_pred EEEEECCCC-eEEEEEcCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEE
Q 003236 706 ISILDVETQ-VCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSL 783 (837)
Q Consensus 706 I~iwDl~s~-~~~~~l~~h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fspdg~~L 783 (837)
+.+||++.. .+...+..|.++|.|+.|+|++.+||+|+ |+.|+|||..+... ..++++. ...++.++.|-|+..+.
T Consensus 201 lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~-~~~~tIn-Tiapv~rVkWRP~~~~h 278 (839)
T KOG0269|consen 201 LQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRA-KPKHTIN-TIAPVGRVKWRPARSYH 278 (839)
T ss_pred EEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCCCccEEEEeccCCCc-cceeEEe-ecceeeeeeeccCccch
Confidence 999999975 67788889999999999999999999999 99999999987543 3333433 36789999999998765
Q ss_pred EEEEc---CCeEEEEECCCCcEE--EeccCCCCeeEEEEeC-CCCEEEEEECCCcEE
Q 003236 784 LVIGC---YETLELWNMTENKTL--TLSAHDKLVSSLAAST-VNGMVASASHDKCVK 834 (837)
Q Consensus 784 ~sgs~---dg~I~IwDl~s~~~~--~l~~h~~~V~sla~sp-dg~~LaSgs~DG~I~ 834 (837)
++.+. |-.|+|||++..-+- .+..|...++.++|.. |...|.+++.||+|.
T Consensus 279 LAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~~~vt~i~W~~~d~~~l~s~sKD~tv~ 335 (839)
T KOG0269|consen 279 LATCSMVVDTSVHVWDVRRPYIPYATFLEHTDSVTGIAWDSGDRINLWSCSKDGTVL 335 (839)
T ss_pred hhhhhccccceEEEEeeccccccceeeeccCccccceeccCCCceeeEeecCccHHH
Confidence 55443 559999999876543 7889999999999975 445888999999864
|
|
| >KOG0646 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.7e-22 Score=216.07 Aligned_cols=230 Identities=23% Similarity=0.286 Sum_probs=202.0
Q ss_pred CCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCC-----
Q 003236 554 STSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTEN----- 628 (837)
Q Consensus 554 H~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~----- 628 (837)
-.++|.|++-+|+|.+|+.|+..|.|++|.+.+|..+..+..|-..|+|+.|+.|+.+|+||+.||.|.+|++.+
T Consensus 80 ~Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~ 159 (476)
T KOG0646|consen 80 LPGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSAD 159 (476)
T ss_pred cccceeeeecCCCceEEEeecccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeecccc
Confidence 356799999999999999998999999999999999999999999999999999999999999999999998742
Q ss_pred ---CCceeEEeeccccceEEEEEcCCC-CeEEEEEeCCCcEEEEECCCCeeeeEEecCCCeeEEEEecCCCEEEEEEcCC
Q 003236 629 ---PDYSLRTFTGHSTTVMSLDFHPSK-EDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIEN 704 (837)
Q Consensus 629 ---~~~~~~~~~~h~~~V~sl~fspdg-~~llasgs~Dg~I~vwDl~t~~~i~~~~~~~~i~sl~~sp~g~~llags~dg 704 (837)
.-.++..+..|+-+|+++...+.+ +..+++++.|.+|++||+..+..+..+..+..+.+++.+|.+..+++|+.+|
T Consensus 160 ~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~fp~si~av~lDpae~~~yiGt~~G 239 (476)
T KOG0646|consen 160 NDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTITFPSSIKAVALDPAERVVYIGTEEG 239 (476)
T ss_pred cCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEecCCcceeEEEcccccEEEecCCcc
Confidence 224578899999999999987652 4467799999999999999999999999999999999999999999999999
Q ss_pred eEEEEECCCC----------------eEEEEEcCCCC--CEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEee
Q 003236 705 YISILDVETQ----------------VCRLKLQGHKN--QVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELS 765 (837)
Q Consensus 705 ~I~iwDl~s~----------------~~~~~l~~h~~--~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~ 765 (837)
.|.+.++... ..+..+.+|.+ .|+|++++-||.+|++|+ ||.|+|||+.+. .+++++.
T Consensus 240 ~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~---Q~iRtl~ 316 (476)
T KOG0646|consen 240 KIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIYSK---QCIRTLQ 316 (476)
T ss_pred eEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEecchH---HHHHHHh
Confidence 9999877532 34556778888 999999999999999999 999999999887 7777777
Q ss_pred cCCCceEEEEEeCCCCEEEEE
Q 003236 766 CTGNKFHSCVFHPTFPSLLVI 786 (837)
Q Consensus 766 ~~~~~I~sv~fspdg~~L~sg 786 (837)
...++|+.+.+.|-.+.++.+
T Consensus 317 ~~kgpVtnL~i~~~~~~~~l~ 337 (476)
T KOG0646|consen 317 TSKGPVTNLQINPLERGIILF 337 (476)
T ss_pred hhccccceeEeeccccceecc
Confidence 678889999887665444443
|
|
| >KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.90 E-value=3.7e-22 Score=213.38 Aligned_cols=253 Identities=19% Similarity=0.335 Sum_probs=205.4
Q ss_pred EEEEecCCCCCeEEEEEcCCC-CEEEEEECCCcEEEEeCCCC----------eEEEEeccCCCCeEEEEEcCC-CCEEEE
Q 003236 547 EFQLIPASTSKVESCHFSPDG-KLLATGGHDKKAVLWCTESF----------TVKSTLEEHTQWITDVRFSPS-LSRLAT 614 (837)
Q Consensus 547 ~~~~l~~H~~~V~sl~fSpdg-~~Lasgs~Dg~I~VWd~~t~----------~~~~~l~~h~~~I~~l~fspd-g~~Lat 614 (837)
++...-.|.+.|+.+.+-|.. .++|+++..+.|+|||..+. .+-.++.+|...-++++|++. .-+|++
T Consensus 116 ~i~~~i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls 195 (422)
T KOG0264|consen 116 EISQKINHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLS 195 (422)
T ss_pred EEEEeccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEee
Confidence 344455799999999999954 57788888999999997642 222377899988889999984 557999
Q ss_pred EeCCCeEEEEEcCCCCc------eeEEeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCC--CeeeeEEe-cCCCe
Q 003236 615 SSADRTVRVWDTENPDY------SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN--GSCAGVFK-CQSGA 685 (837)
Q Consensus 615 gs~Dg~I~IWDl~~~~~------~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t--~~~i~~~~-~~~~i 685 (837)
++.|++|++||+..... +...+.+|...|..++|++....+|++++.|+.+.|||+++ .++..... +..++
T Consensus 196 ~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~v 275 (422)
T KOG0264|consen 196 GSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEV 275 (422)
T ss_pred ccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccccccCCce
Confidence 99999999999975332 35678999999999999999999999999999999999994 44444443 46789
Q ss_pred eEEEEecCCCE-EEEEEcCCeEEEEECCCC-eEEEEEcCCCCCEEEEEEcCCCC-EEEEEe-CCeEEEEEcCCCC-----
Q 003236 686 TQMRFQPRLGR-ILAAAIENYISILDVETQ-VCRLKLQGHKNQVHSVCWNTSGE-YLASVS-DELVRVWSIGSGS----- 756 (837)
Q Consensus 686 ~sl~~sp~g~~-llags~dg~I~iwDl~s~-~~~~~l~~h~~~V~sl~~spdg~-~Lasgs-Dg~I~IwDl~s~~----- 756 (837)
.|++|+|-+.+ |++|+.|++|.+||+|+- .++.++.+|...|.+|.|+|... .|++++ |+.+.|||+..-.
T Consensus 276 n~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~ 355 (422)
T KOG0264|consen 276 NCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSP 355 (422)
T ss_pred eEEEeCCCCCceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEeccccccccCh
Confidence 99999996655 556677999999999985 68889999999999999999765 555555 9999999997532
Q ss_pred ------CceeEEEeecCCCceEEEEEeCCCCEE-EEEEcCCeEEEEECCC
Q 003236 757 ------KGECIHELSCTGNKFHSCVFHPTFPSL-LVIGCYETLELWNMTE 799 (837)
Q Consensus 757 ------~~~~i~~~~~~~~~I~sv~fspdg~~L-~sgs~dg~I~IwDl~s 799 (837)
..+.+....+|...|..+.|+|..+.+ ++++.|+.+.||.+..
T Consensus 356 eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s~ 405 (422)
T KOG0264|consen 356 EDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMAE 405 (422)
T ss_pred hhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeeccc
Confidence 234567778899999999999998765 5567788999999764
|
|
| >KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.3e-22 Score=200.86 Aligned_cols=243 Identities=23% Similarity=0.396 Sum_probs=200.7
Q ss_pred ccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCC--ceeEEeeccccceEEEEEc-CCCCeEEEEEeCCCcEEEEEC
Q 003236 594 EEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPD--YSLRTFTGHSTTVMSLDFH-PSKEDLLCSCDNNSEIRYWSI 670 (837)
Q Consensus 594 ~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~~~--~~~~~~~~h~~~V~sl~fs-pdg~~llasgs~Dg~I~vwDl 670 (837)
..|.+.|.++...-.|++|+||+.|++|+||.++.+. ..+.++.+|.++|+.++|. |.-..+|++|+.||.|.||.-
T Consensus 8 t~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke 87 (299)
T KOG1332|consen 8 TQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKE 87 (299)
T ss_pred hhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEec
Confidence 4689999999888889999999999999999998765 5678999999999999995 555669999999999999999
Q ss_pred CCCeeeeEEe---cCCCeeEEEEecC--CCEEEEEEcCCeEEEEECCCC---eEEEEEcCCCCCEEEEEEcCC---C---
Q 003236 671 NNGSCAGVFK---CQSGATQMRFQPR--LGRILAAAIENYISILDVETQ---VCRLKLQGHKNQVHSVCWNTS---G--- 736 (837)
Q Consensus 671 ~t~~~i~~~~---~~~~i~sl~~sp~--g~~llags~dg~I~iwDl~s~---~~~~~l~~h~~~V~sl~~spd---g--- 736 (837)
.++.-..... +...+++++|.|. |-.|++++.||.|.|++.+.. ........|.-.|++++|.|. |
T Consensus 88 ~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~~ 167 (299)
T KOG1332|consen 88 ENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSLV 167 (299)
T ss_pred CCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCcccc
Confidence 9885443332 3567999999885 446788999999999988754 334455679999999999985 4
Q ss_pred --------CEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCC----CEEEEEEcCCeEEEEECCCC---
Q 003236 737 --------EYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTF----PSLLVIGCYETLELWNMTEN--- 800 (837)
Q Consensus 737 --------~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fspdg----~~L~sgs~dg~I~IwDl~s~--- 800 (837)
+.|++|+ |..|+||+..++ ....-.++..|...|+.++|.|.- .+|++++.||+|.||.....
T Consensus 168 ~~~~~~~~krlvSgGcDn~VkiW~~~~~-~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e~ 246 (299)
T KOG1332|consen 168 DQGPAAKVKRLVSGGCDNLVKIWKFDSD-SWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYEP 246 (299)
T ss_pred ccCcccccceeeccCCccceeeeecCCc-chhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecCccCc
Confidence 4688888 999999999886 334445588999999999999975 56999999999999976532
Q ss_pred -cEEEeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 003236 801 -KTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 837 (837)
Q Consensus 801 -~~~~l~~h~~~V~sla~spdg~~LaSgs~DG~I~IWd 837 (837)
+...+......++.+.||..|.+|+.++.|+.|.+|+
T Consensus 247 wk~tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwk 284 (299)
T KOG1332|consen 247 WKKTLLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWK 284 (299)
T ss_pred ccccccccCCcceEEEEEeccccEEEEecCCcEEEEEE
Confidence 1223445677899999999999999999999999995
|
|
| >KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.89 E-value=6.8e-22 Score=211.32 Aligned_cols=242 Identities=20% Similarity=0.316 Sum_probs=198.1
Q ss_pred ccCCCCeEEEEEcCC-CCEEEEEeCCCeEEEEEcCCCCc---------eeEEeeccccceEEEEEcCCCCeEEEEEeCCC
Q 003236 594 EEHTQWITDVRFSPS-LSRLATSSADRTVRVWDTENPDY---------SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNS 663 (837)
Q Consensus 594 ~~h~~~I~~l~fspd-g~~Latgs~Dg~I~IWDl~~~~~---------~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg 663 (837)
..|.+.|+.+++-|. ..+|++.+..+.|+|||..+... +-..+.+|...-++++|++.....+++++.|+
T Consensus 121 i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~ 200 (422)
T KOG0264|consen 121 INHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDH 200 (422)
T ss_pred ccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccCCC
Confidence 359999999999995 56777888899999999875322 12378899988899999999888899999999
Q ss_pred cEEEEECCCCee-------eeEEe-cCCCeeEEEEecCCC-EEEEEEcCCeEEEEECC--CCeEEEEEcCCCCCEEEEEE
Q 003236 664 EIRYWSINNGSC-------AGVFK-CQSGATQMRFQPRLG-RILAAAIENYISILDVE--TQVCRLKLQGHKNQVHSVCW 732 (837)
Q Consensus 664 ~I~vwDl~t~~~-------i~~~~-~~~~i~sl~~sp~g~-~llags~dg~I~iwDl~--s~~~~~~l~~h~~~V~sl~~ 732 (837)
.|++||+..... ...+. +...|..++|++... .|.+++.|+.+.|||++ +.++.....+|...|+|++|
T Consensus 201 ~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~f 280 (422)
T KOG0264|consen 201 TICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNCVAF 280 (422)
T ss_pred cEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccccccCCceeEEEe
Confidence 999999975432 12233 355688999999654 46677788999999999 56777788899999999999
Q ss_pred cCC-CCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCC-CEEEEEEcCCeEEEEECCCCc--------
Q 003236 733 NTS-GEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTF-PSLLVIGCYETLELWNMTENK-------- 801 (837)
Q Consensus 733 spd-g~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fspdg-~~L~sgs~dg~I~IwDl~s~~-------- 801 (837)
+|- +.+||+|+ |++|++||+|+.. .+++.+..|...|..+.|+|.. ..|++++.|+.+.|||+..-.
T Consensus 281 np~~~~ilAT~S~D~tV~LwDlRnL~--~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~eda 358 (422)
T KOG0264|consen 281 NPFNEFILATGSADKTVALWDLRNLN--KPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPEDA 358 (422)
T ss_pred CCCCCceEEeccCCCcEEEeechhcc--cCceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEeccccccccChhhh
Confidence 995 45677777 9999999999875 5899999999999999999986 456777889999999985311
Q ss_pred -------EEEeccCCCCeeEEEEeCCCC-EEEEEECCCcEEEeC
Q 003236 802 -------TLTLSAHDKLVSSLAASTVNG-MVASASHDKCVKIWK 837 (837)
Q Consensus 802 -------~~~l~~h~~~V~sla~spdg~-~LaSgs~DG~I~IWd 837 (837)
++.-.+|...|..+.|+|+.. .|+++++|+.+.||+
T Consensus 359 ~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~ 402 (422)
T KOG0264|consen 359 EDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQ 402 (422)
T ss_pred ccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEee
Confidence 124568999999999999876 678899999999995
|
|
| >KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.3e-21 Score=196.31 Aligned_cols=283 Identities=20% Similarity=0.328 Sum_probs=219.8
Q ss_pred EecCCCCCeEEEEEcC-CCCEEEEEECCCcEEEEeCCCCe----------EEEE-----eccCCCCeEEEEEcC-CCCEE
Q 003236 550 LIPASTSKVESCHFSP-DGKLLATGGHDKKAVLWCTESFT----------VKST-----LEEHTQWITDVRFSP-SLSRL 612 (837)
Q Consensus 550 ~l~~H~~~V~sl~fSp-dg~~Lasgs~Dg~I~VWd~~t~~----------~~~~-----l~~h~~~I~~l~fsp-dg~~L 612 (837)
..+.|.+.|.++.+.+ .|+|+++|+.||.|.|||+++.. .+.. -.+|.-.|.++.|-| |...+
T Consensus 38 ~~r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmF 117 (397)
T KOG4283|consen 38 FVRPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMF 117 (397)
T ss_pred eeccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCcee
Confidence 3467899999999988 78999999999999999987532 1111 136888999999999 66788
Q ss_pred EEEeCCCeEEEEEcCCCCceeEEeeccccceEEEEEcCC--CCeEEEEEeCCCcEEEEECCCCeeeeEEec-CCCeeEEE
Q 003236 613 ATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPS--KEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMR 689 (837)
Q Consensus 613 atgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~sl~fspd--g~~llasgs~Dg~I~vwDl~t~~~i~~~~~-~~~i~sl~ 689 (837)
.+++.|.+++|||..+-.. ...| ...+.|++-+++|- ...++++|..|-.|++.|+.+|.+...+.. ..+|.++.
T Consensus 118 tssSFDhtlKVWDtnTlQ~-a~~F-~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vlaV~ 195 (397)
T KOG4283|consen 118 TSSSFDHTLKVWDTNTLQE-AVDF-KMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVLAVE 195 (397)
T ss_pred ecccccceEEEeeccccee-eEEe-ecCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCceEEEE
Confidence 8999999999999998653 2333 35577888888874 356888898999999999999999999885 56799999
Q ss_pred EecCCCEE-EEEEcCCeEEEEECCCC-eEEEEE--------------cCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEc
Q 003236 690 FQPRLGRI-LAAAIENYISILDVETQ-VCRLKL--------------QGHKNQVHSVCWNTSGEYLASVS-DELVRVWSI 752 (837)
Q Consensus 690 ~sp~g~~l-lags~dg~I~iwDl~s~-~~~~~l--------------~~h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl 752 (837)
|+|...++ ++|+.||.|++||++.. .+...+ ..|.+.|..++|..++.++++++ |..+++|+.
T Consensus 196 Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~ 275 (397)
T KOG4283|consen 196 WSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWNM 275 (397)
T ss_pred eccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccCccceEEeec
Confidence 99988775 56778999999999864 333332 24677899999999999999988 999999999
Q ss_pred CCCCCceeEEEeecCC----CceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE-EeccCCCCeeEEEEeCCCCEEEEE
Q 003236 753 GSGSKGECIHELSCTG----NKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASA 827 (837)
Q Consensus 753 ~s~~~~~~i~~~~~~~----~~I~sv~fspdg~~L~sgs~dg~I~IwDl~s~~~~-~l~~h~~~V~sla~spdg~~LaSg 827 (837)
.++.....-.....+. ..+. +. +-+...++..-.++.+.++++-++..+ .+..|...|.|.++-|+=....++
T Consensus 276 ~~G~ntl~~~g~~~~n~~~~~~~~-~~-~~~s~vfv~~p~~~~lall~~~sgs~ir~l~~h~k~i~c~~~~~~fq~~~tg 353 (397)
T KOG4283|consen 276 ESGRNTLREFGPIIHNQTTSFAVH-IQ-SMDSDVFVLFPNDGSLALLNLLEGSFVRRLSTHLKRINCAAYRPDFEQCFTG 353 (397)
T ss_pred ccCcccccccccccccccccceEE-Ee-ecccceEEEEecCCeEEEEEccCceEEEeeecccceeeEEeecCchhhhhcc
Confidence 8875321111111111 1111 22 334445555556689999999988887 677898999999999999999999
Q ss_pred ECCCcEEEe
Q 003236 828 SHDKCVKIW 836 (837)
Q Consensus 828 s~DG~I~IW 836 (837)
..|+.|..|
T Consensus 354 ~~d~ni~~w 362 (397)
T KOG4283|consen 354 DMNGNIYMW 362 (397)
T ss_pred ccCCccccc
Confidence 999999888
|
|
| >KOG1274 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.89 E-value=3.6e-21 Score=219.82 Aligned_cols=276 Identities=14% Similarity=0.228 Sum_probs=219.4
Q ss_pred cCCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCC-eEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCC
Q 003236 552 PASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESF-TVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPD 630 (837)
Q Consensus 552 ~~H~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~-~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~~~ 630 (837)
.+|+...+.|+|.|+|++|++++.||.|++|+.... +...++..+...|.+++.. +.+|++|+.+++|.+|.+..+.
T Consensus 10 yaht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~~--s~~f~~~s~~~tv~~y~fps~~ 87 (933)
T KOG1274|consen 10 YAHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIACY--SNHFLTGSEQNTVLRYKFPSGE 87 (933)
T ss_pred hhccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhhccCceeEEEeec--ccceEEeeccceEEEeeCCCCC
Confidence 378999999999999999999999999999987655 4445554478888888864 4599999999999999998766
Q ss_pred ceeEEeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeeEEe-cCCCeeEEEEecCCCEEEEEEcCCeEEEE
Q 003236 631 YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK-CQSGATQMRFQPRLGRILAAAIENYISIL 709 (837)
Q Consensus 631 ~~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~-~~~~i~sl~~sp~g~~llags~dg~I~iw 709 (837)
. -..+...+-++.+++|+-+|. +++.|+.|-.|++.++.+......+. +..+|.++.|+|.+++|++.+.||.|++|
T Consensus 88 ~-~~iL~Rftlp~r~~~v~g~g~-~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw 165 (933)
T KOG1274|consen 88 E-DTILARFTLPIRDLAVSGSGK-MIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIW 165 (933)
T ss_pred c-cceeeeeeccceEEEEecCCc-EEEeecCceeEEEEeccccchheeecccCCceeeeeEcCCCCEEEEEecCceEEEE
Confidence 4 345555678899999999877 56688889999999999887777776 46789999999999999999999999999
Q ss_pred ECCCCeEEEEEcCC--------CCCEEEEEEcCCCC-EEEEEeCCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCC
Q 003236 710 DVETQVCRLKLQGH--------KNQVHSVCWNTSGE-YLASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTF 780 (837)
Q Consensus 710 Dl~s~~~~~~l~~h--------~~~V~sl~~spdg~-~LasgsDg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fspdg 780 (837)
|+.++.+...+.+- ...+..++|+|++. +++.+.|+.|++|+..+......+. ...+...+..+.|+|.|
T Consensus 166 ~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr-~~~~ss~~~~~~wsPnG 244 (933)
T KOG1274|consen 166 DLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLR-DKLSSSKFSDLQWSPNG 244 (933)
T ss_pred EcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeec-ccccccceEEEEEcCCC
Confidence 99998877666531 33566789999955 5555559999999998874322222 22234449999999999
Q ss_pred CEEEEEEcCCeEEEEECCCCcEEEeccCCCCeeEEEEeCCCCEEEEEECCCcEEE
Q 003236 781 PSLLVIGCYETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKI 835 (837)
Q Consensus 781 ~~L~sgs~dg~I~IwDl~s~~~~~l~~h~~~V~sla~spdg~~LaSgs~DG~I~I 835 (837)
.||++++.+|.|.|||+++... ......|.+++|.|+..-|-.-..-|...+
T Consensus 245 ~YiAAs~~~g~I~vWnv~t~~~---~~~~~~Vc~~aw~p~~n~it~~~~~g~~~~ 296 (933)
T KOG1274|consen 245 KYIAASTLDGQILVWNVDTHER---HEFKRAVCCEAWKPNANAITLITALGTLGV 296 (933)
T ss_pred cEEeeeccCCcEEEEecccchh---ccccceeEEEecCCCCCeeEEEeecccccc
Confidence 9999999999999999998322 334568999999999876655444454433
|
|
| >KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown] | Back alignment and domain information |
|---|
Probab=99.89 E-value=7.4e-21 Score=204.39 Aligned_cols=302 Identities=18% Similarity=0.258 Sum_probs=231.0
Q ss_pred EEcccCCCceEEeecCCCCCCCCccccccccCCCeeeeEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCe
Q 003236 509 VDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFT 588 (837)
Q Consensus 509 v~~Gs~D~~v~~w~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~H~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~ 588 (837)
+.+|..++++.+|.... .......+ +|.+.|.+++.-.+|.+|- |+.|..|..||-. .+
T Consensus 260 viTgDS~G~i~Iw~~~~------------------~~~~k~~~-aH~ggv~~L~~lr~GtllS-GgKDRki~~Wd~~-y~ 318 (626)
T KOG2106|consen 260 VITGDSGGNILIWSKGT------------------NRISKQVH-AHDGGVFSLCMLRDGTLLS-GGKDRKIILWDDN-YR 318 (626)
T ss_pred EEeecCCceEEEEeCCC------------------ceEEeEee-ecCCceEEEEEecCccEee-cCccceEEecccc-cc
Confidence 46777788888884411 11122333 9999999999999997665 9999999999821 11
Q ss_pred EE-----------------------------------------EEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcC
Q 003236 589 VK-----------------------------------------STLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTE 627 (837)
Q Consensus 589 ~~-----------------------------------------~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~ 627 (837)
.+ .+..+|.+..+.++.+|+...++|++.|+.+++|+
T Consensus 319 k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~-- 396 (626)
T KOG2106|consen 319 KLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN-- 396 (626)
T ss_pred ccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCChhheeeccCcceEEEcc--
Confidence 00 01126888889999999999999999999999999
Q ss_pred CCCceeEEeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeeEEecCCCeeEEEEecCCCEEEEEEcCCeEE
Q 003236 628 NPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYIS 707 (837)
Q Consensus 628 ~~~~~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~~~~i~sl~~sp~g~~llags~dg~I~ 707 (837)
..+ +........++.|++|+|.| .++.|...|...+.|+++...+........+++++|+|+|.+|++|+.|+.|+
T Consensus 397 ~~k--~~wt~~~~d~~~~~~fhpsg--~va~Gt~~G~w~V~d~e~~~lv~~~~d~~~ls~v~ysp~G~~lAvgs~d~~iy 472 (626)
T KOG2106|consen 397 DHK--LEWTKIIEDPAECADFHPSG--VVAVGTATGRWFVLDTETQDLVTIHTDNEQLSVVRYSPDGAFLAVGSHDNHIY 472 (626)
T ss_pred CCc--eeEEEEecCceeEeeccCcc--eEEEeeccceEEEEecccceeEEEEecCCceEEEEEcCCCCEEEEecCCCeEE
Confidence 222 22223345789999999998 67789999999999999988777777788899999999999999999999999
Q ss_pred EEECCCC-eEEEEE-cCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeE-----------EEe----ecCCC
Q 003236 708 ILDVETQ-VCRLKL-QGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECI-----------HEL----SCTGN 769 (837)
Q Consensus 708 iwDl~s~-~~~~~l-~~h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i-----------~~~----~~~~~ 769 (837)
||.+... ...... +.+..+|+.+.|++|+++|.+-+ |-.|-.|..........+ .-| ..++.
T Consensus 473 iy~Vs~~g~~y~r~~k~~gs~ithLDwS~Ds~~~~~~S~d~eiLyW~~~~~~~~ts~kDvkW~t~~c~lGF~v~g~s~~t 552 (626)
T KOG2106|consen 473 IYRVSANGRKYSRVGKCSGSPITHLDWSSDSQFLVSNSGDYEILYWKPSECKQITSVKDVKWATYTCTLGFEVFGGSDGT 552 (626)
T ss_pred EEEECCCCcEEEEeeeecCceeEEeeecCCCceEEeccCceEEEEEccccCcccceecceeeeeeEEEEEEEEecccCCc
Confidence 9988754 222222 22458999999999999999998 889999954332211111 111 12445
Q ss_pred ceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE----EeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 003236 770 KFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL----TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 837 (837)
Q Consensus 770 ~I~sv~fspdg~~L~sgs~dg~I~IwDl~s~~~~----~l~~h~~~V~sla~spdg~~LaSgs~DG~I~IWd 837 (837)
.|..++-+.+.+.++++...|+|++|...-.... ...+|.+.|++++|..+..+|++.+.|..|..|+
T Consensus 553 ~i~a~~rs~~~~~lA~gdd~g~v~lf~yPc~s~rA~~he~~ghs~~vt~V~Fl~~d~~li~tg~D~Si~qW~ 624 (626)
T KOG2106|consen 553 DINAVARSHCEKLLASGDDFGKVHLFSYPCSSPRAPSHEYGGHSSHVTNVAFLCKDSHLISTGKDTSIMQWR 624 (626)
T ss_pred hHHHhhhhhhhhhhhccccCceEEEEccccCCCcccceeeccccceeEEEEEeeCCceEEecCCCceEEEEE
Confidence 5667777888888999999999999987544332 6779999999999999888888888999999996
|
|
| >KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown] | Back alignment and domain information |
|---|
Probab=99.89 E-value=7.2e-22 Score=217.46 Aligned_cols=276 Identities=22% Similarity=0.317 Sum_probs=210.0
Q ss_pred EEEcC---CCCEEEEEECCCcEEEEeCCCCeEE------EEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCc
Q 003236 561 CHFSP---DGKLLATGGHDKKAVLWCTESFTVK------STLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDY 631 (837)
Q Consensus 561 l~fSp---dg~~Lasgs~Dg~I~VWd~~t~~~~------~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~~~~ 631 (837)
+.|++ ...+||.+.+||.|.++|....... .....|...|.++.|-|....|++++.|.++++||+.+.+.
T Consensus 55 ~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l 134 (720)
T KOG0321|consen 55 DSFSAAPNKEHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRL 134 (720)
T ss_pred ccccCCCCccceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCCCceeEEEccCCceeeeeeecccee
Confidence 66665 3347999999999999998754332 44568999999999999878899999999999999998664
Q ss_pred e-eEEeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeee--e------------------EE--------ecC
Q 003236 632 S-LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCA--G------------------VF--------KCQ 682 (837)
Q Consensus 632 ~-~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i--~------------------~~--------~~~ 682 (837)
. ...+.+|.+.|.+++|.|.+..+||+|+.||.|.|||++....- . .. ...
T Consensus 135 ~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s 214 (720)
T KOG0321|consen 135 VGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAAS 214 (720)
T ss_pred ecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhcccccccccc
Confidence 2 13488999999999999999999999999999999999743300 0 00 001
Q ss_pred CCeeE---EEEecCCCEEEEEEc-CCeEEEEECCCCeEEEEE--------cCC---CCCEEEEEEcCCCCEEEEEe-CCe
Q 003236 683 SGATQ---MRFQPRLGRILAAAI-ENYISILDVETQVCRLKL--------QGH---KNQVHSVCWNTSGEYLASVS-DEL 746 (837)
Q Consensus 683 ~~i~s---l~~sp~g~~llags~-dg~I~iwDl~s~~~~~~l--------~~h---~~~V~sl~~spdg~~Lasgs-Dg~ 746 (837)
..|.+ +.+..|...|++++. |+.|+|||+++....... ..| ...+++++.+..|.+|++.. |+.
T Consensus 215 ~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~s 294 (720)
T KOG0321|consen 215 NTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDNS 294 (720)
T ss_pred CceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEecCCc
Confidence 12333 556677788888777 999999999986544322 223 23577888888887776654 999
Q ss_pred EEEEEcCCCCCceeEEEeecCCC--ceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE--EeccCCCCeeEEEEeCCC-
Q 003236 747 VRVWSIGSGSKGECIHELSCTGN--KFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL--TLSAHDKLVSSLAASTVN- 821 (837)
Q Consensus 747 I~IwDl~s~~~~~~i~~~~~~~~--~I~sv~fspdg~~L~sgs~dg~I~IwDl~s~~~~--~l~~h~~~V~sla~spdg- 821 (837)
|++|++.+... ..+..+.++.. -...-..+|++.+|++|+.|...++|.+.+.+.- .+.+|.-.|++++|.|..
T Consensus 295 Iy~ynm~s~s~-sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~~l~Ght~eVt~V~w~pS~~ 373 (720)
T KOG0321|consen 295 IYFYNMRSLSI-SPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEAPPALLLGHTREVTTVRWLPSAT 373 (720)
T ss_pred EEEEeccccCc-CchhhccCcccceeeeeeecCCCCceEeccCCCcceeeeeecCccCChhhhhCcceEEEEEeeccccC
Confidence 99999987543 33333333322 1233467999999999999999999999887643 677999999999998854
Q ss_pred CEEEEEECCCcEEEeC
Q 003236 822 GMVASASHDKCVKIWK 837 (837)
Q Consensus 822 ~~LaSgs~DG~I~IWd 837 (837)
.-+|+|++|..++||+
T Consensus 374 t~v~TcSdD~~~kiW~ 389 (720)
T KOG0321|consen 374 TPVATCSDDFRVKIWR 389 (720)
T ss_pred CCceeeccCcceEEEe
Confidence 3577889999999996
|
|
| >KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.8e-21 Score=207.03 Aligned_cols=236 Identities=19% Similarity=0.348 Sum_probs=204.1
Q ss_pred CCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCe--EEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCce
Q 003236 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFT--VKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYS 632 (837)
Q Consensus 555 ~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~--~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~~~~~ 632 (837)
..-|.+|.+.|||+.|++|++-.+|.|||+.... ....+....-.+++++.+||.+..++|+.||.|.|||+.+. ..
T Consensus 465 dnyiRSckL~pdgrtLivGGeastlsiWDLAapTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq-~~ 543 (705)
T KOG0639|consen 465 DNYIRSCKLLPDGRTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQ-TL 543 (705)
T ss_pred ccceeeeEecCCCceEEeccccceeeeeeccCCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccc-ee
Confidence 4569999999999999999999999999997543 33444444456888999999999999999999999999974 46
Q ss_pred eEEeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeeEEecCCCeeEEEEecCCCEEEEEEcCCeEEEEECC
Q 003236 633 LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVE 712 (837)
Q Consensus 633 ~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~~~~i~sl~~sp~g~~llags~dg~I~iwDl~ 712 (837)
++.+.+|.+.+.||+++++|.. |.+|+-|.+|+.||++++..+......+.|.++.++|.+.++++|-..+.+.|....
T Consensus 544 VrqfqGhtDGascIdis~dGtk-lWTGGlDntvRcWDlregrqlqqhdF~SQIfSLg~cP~~dWlavGMens~vevlh~s 622 (705)
T KOG0639|consen 544 VRQFQGHTDGASCIDISKDGTK-LWTGGLDNTVRCWDLREGRQLQQHDFSSQIFSLGYCPTGDWLAVGMENSNVEVLHTS 622 (705)
T ss_pred eecccCCCCCceeEEecCCCce-eecCCCccceeehhhhhhhhhhhhhhhhhheecccCCCccceeeecccCcEEEEecC
Confidence 9999999999999999999875 459999999999999999988888888999999999999999999999999998876
Q ss_pred CCeEEEEEcCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCe
Q 003236 713 TQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYET 791 (837)
Q Consensus 713 s~~~~~~l~~h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fspdg~~L~sgs~dg~ 791 (837)
.. ..+.+.-|++.|.++.|.+.|+++++.+ |+.+..|...-+ ..+...+ ....|.+|.++.|.++|++|+.|..
T Consensus 623 kp-~kyqlhlheScVLSlKFa~cGkwfvStGkDnlLnawrtPyG---asiFqsk-E~SsVlsCDIS~ddkyIVTGSGdkk 697 (705)
T KOG0639|consen 623 KP-EKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYG---ASIFQSK-ESSSVLSCDISFDDKYIVTGSGDKK 697 (705)
T ss_pred Cc-cceeecccccEEEEEEecccCceeeecCchhhhhhccCccc---cceeecc-ccCcceeeeeccCceEEEecCCCcc
Confidence 54 3445666999999999999999999988 999999998776 3443333 3578999999999999999999998
Q ss_pred EEEEEC
Q 003236 792 LELWNM 797 (837)
Q Consensus 792 I~IwDl 797 (837)
..||.+
T Consensus 698 ATVYeV 703 (705)
T KOG0639|consen 698 ATVYEV 703 (705)
T ss_pred eEEEEE
Confidence 888865
|
|
| >KOG1274 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.88 E-value=4.7e-21 Score=218.89 Aligned_cols=240 Identities=16% Similarity=0.256 Sum_probs=201.0
Q ss_pred cCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeEEeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCe
Q 003236 595 EHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS 674 (837)
Q Consensus 595 ~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~ 674 (837)
.|+...+.|+|.|+|++|++|+.||.|++|+.......-.++..+...|.+++.... .|++|+.+++|.+|.+.+++
T Consensus 11 aht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~~s~---~f~~~s~~~tv~~y~fps~~ 87 (933)
T KOG1274|consen 11 AHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIACYSN---HFLTGSEQNTVLRYKFPSGE 87 (933)
T ss_pred hccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhhccCceeEEEeeccc---ceEEeeccceEEEeeCCCCC
Confidence 688889999999999999999999999999987663333444447788998887643 67799999999999998876
Q ss_pred eeeEE-ecCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEc
Q 003236 675 CAGVF-KCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSI 752 (837)
Q Consensus 675 ~i~~~-~~~~~i~sl~~sp~g~~llags~dg~I~iwDl~s~~~~~~l~~h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl 752 (837)
.-..+ +..-++.+++|+.+|+++++|+.|-.|++.++.+......+++|..+|.+|.|+|.+++||+.+ ||.|+|||+
T Consensus 88 ~~~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw~~ 167 (933)
T KOG1274|consen 88 EDTILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIWDL 167 (933)
T ss_pred ccceeeeeeccceEEEEecCCcEEEeecCceeEEEEeccccchheeecccCCceeeeeEcCCCCEEEEEecCceEEEEEc
Confidence 54322 2347899999999999999999999999999999999999999999999999999999999999 999999999
Q ss_pred CCCCCceeEEEee----cC-CCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE---EeccCCCCeeEEEEeCCCCEE
Q 003236 753 GSGSKGECIHELS----CT-GNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL---TLSAHDKLVSSLAASTVNGMV 824 (837)
Q Consensus 753 ~s~~~~~~i~~~~----~~-~~~I~sv~fspdg~~L~sgs~dg~I~IwDl~s~~~~---~l~~h~~~V~sla~spdg~~L 824 (837)
.++.....+..+. .. ...+..++|+|++..+++.+.|+.|++|+..++... ....+...+.++.|+|+|+||
T Consensus 168 ~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsPnG~Yi 247 (933)
T KOG1274|consen 168 QDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQWSPNGKYI 247 (933)
T ss_pred ccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeecccccccceEEEEEcCCCcEE
Confidence 9874322221111 11 345677899999999999999999999999998866 333455569999999999999
Q ss_pred EEEECCCcEEEeC
Q 003236 825 ASASHDKCVKIWK 837 (837)
Q Consensus 825 aSgs~DG~I~IWd 837 (837)
|+++.||.|.|||
T Consensus 248 AAs~~~g~I~vWn 260 (933)
T KOG1274|consen 248 AASTLDGQILVWN 260 (933)
T ss_pred eeeccCCcEEEEe
Confidence 9999999999997
|
|
| >KOG2048 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.88 E-value=3.8e-20 Score=205.62 Aligned_cols=282 Identities=17% Similarity=0.227 Sum_probs=231.5
Q ss_pred eeEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCC-eEEEEeccC-CCCeEEEEEcCCCCEEEEEeCCCeEE
Q 003236 545 FTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESF-TVKSTLEEH-TQWITDVRFSPSLSRLATSSADRTVR 622 (837)
Q Consensus 545 ~~~~~~l~~H~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~-~~~~~l~~h-~~~I~~l~fspdg~~Latgs~Dg~I~ 622 (837)
....+.+.--..+|+|++|+.+.+.||++-.||.|.||++... -+...+.++ ...|.+++|+ ++..|++.+.+|.|.
T Consensus 15 vhrcrf~d~~Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~-e~~RLFS~g~sg~i~ 93 (691)
T KOG2048|consen 15 VHRCRFVDYKPSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWA-EGGRLFSSGLSGSIT 93 (691)
T ss_pred EEEEEEEeeeccceEEEEEeccCCceeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEc-cCCeEEeecCCceEE
Confidence 3445566667788999999999999999999999999999864 344555555 4579999999 556788999999999
Q ss_pred EEEcCCCCceeEEeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeeEEec---CCCeeEEEEecCCCEEEE
Q 003236 623 VWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC---QSGATQMRFQPRLGRILA 699 (837)
Q Consensus 623 IWDl~~~~~~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~---~~~i~sl~~sp~g~~lla 699 (837)
-||+.+.+. ...+....+.|++++.+|.+. .++.|+.||.++++++..++....... .+.+.++.|+|++..++.
T Consensus 94 EwDl~~lk~-~~~~d~~gg~IWsiai~p~~~-~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~ 171 (691)
T KOG2048|consen 94 EWDLHTLKQ-KYNIDSNGGAIWSIAINPENT-ILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAG 171 (691)
T ss_pred EEecccCce-eEEecCCCcceeEEEeCCccc-eEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEe
Confidence 999998764 666777789999999999976 555777799999999988887765543 478999999999999999
Q ss_pred EEcCCeEEEEECCCCeEEEEEc-------C-CCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCc
Q 003236 700 AAIENYISILDVETQVCRLKLQ-------G-HKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNK 770 (837)
Q Consensus 700 gs~dg~I~iwDl~s~~~~~~l~-------~-h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~ 770 (837)
|+.||.|++||..++..++... . ...-|.++.|-.++. |++|. .|+|.+||...+ ..+..+..|...
T Consensus 172 Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~t-I~sgDS~G~V~FWd~~~g---TLiqS~~~h~ad 247 (691)
T KOG2048|consen 172 GSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDST-IASGDSAGTVTFWDSIFG---TLIQSHSCHDAD 247 (691)
T ss_pred cccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeecCc-EEEecCCceEEEEcccCc---chhhhhhhhhcc
Confidence 9999999999999987766221 1 233577788876655 55555 999999999888 778888999999
Q ss_pred eEEEEEeCCCCEEEEEEcCCeEEEEECCCCcE--E---EeccCCCCeeEEEEeCCCCEEEEEECCCcEEE
Q 003236 771 FHSCVFHPTFPSLLVIGCYETLELWNMTENKT--L---TLSAHDKLVSSLAASTVNGMVASASHDKCVKI 835 (837)
Q Consensus 771 I~sv~fspdg~~L~sgs~dg~I~IwDl~s~~~--~---~l~~h~~~V~sla~spdg~~LaSgs~DG~I~I 835 (837)
|.+++..++++++++++.|+.|..|...+++. + ....|...|.+++..++ .|++|+.|+.+.|
T Consensus 248 Vl~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~~wv~~~~r~~h~hdvrs~av~~~--~l~sgG~d~~l~i 315 (691)
T KOG2048|consen 248 VLALAVADNEDRVFSAGVDPKIIQYSLTTNKSEWVINSRRDLHAHDVRSMAVIEN--ALISGGRDFTLAI 315 (691)
T ss_pred eeEEEEcCCCCeEEEccCCCceEEEEecCCccceeeeccccCCcccceeeeeecc--eEEecceeeEEEE
Confidence 99999999999999999999999888776643 2 45688899999999876 8999999988765
|
|
| >KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.88 E-value=9.9e-21 Score=193.17 Aligned_cols=257 Identities=20% Similarity=0.321 Sum_probs=198.9
Q ss_pred cCCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCC----CCeEEEEeccCCCCeEEEEEcC--CCCEEEEEeCCCeEEEEE
Q 003236 552 PASTSKVESCHFSPDGKLLATGGHDKKAVLWCTE----SFTVKSTLEEHTQWITDVRFSP--SLSRLATSSADRTVRVWD 625 (837)
Q Consensus 552 ~~H~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~----t~~~~~~l~~h~~~I~~l~fsp--dg~~Latgs~Dg~I~IWD 625 (837)
.+|.+-|.|+.|.+.|+.+|+|+.|++|+|||.+ +..+....+.|.+.|..|.|.+ -|..+|+++.|+++.||.
T Consensus 10 s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWE 89 (361)
T KOG2445|consen 10 SGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWE 89 (361)
T ss_pred cCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeee
Confidence 4789999999999999999999999999999954 3566777889999999999976 389999999999999997
Q ss_pred cCCCC--------ceeEEeeccccceEEEEEcCCC-CeEEEEEeCCCcEEEEECCCCeeeeEEecCCCeeEEEEecCCCE
Q 003236 626 TENPD--------YSLRTFTGHSTTVMSLDFHPSK-EDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGR 696 (837)
Q Consensus 626 l~~~~--------~~~~~~~~h~~~V~sl~fspdg-~~llasgs~Dg~I~vwDl~t~~~i~~~~~~~~i~sl~~sp~g~~ 696 (837)
-.... ....++......|+++.|.|.. ...+++++.||.|+||+.-.--.+.......++..+.. |
T Consensus 90 E~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~-p---- 164 (361)
T KOG2445|consen 90 EQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVID-P---- 164 (361)
T ss_pred ecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccC-C----
Confidence 63111 1235566777899999999964 44678899999999998764333322222111111110 1
Q ss_pred EEEEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEcCC---CCEEEEEeCC------eEEEEEcCCCC-CceeEEEeec
Q 003236 697 ILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTS---GEYLASVSDE------LVRVWSIGSGS-KGECIHELSC 766 (837)
Q Consensus 697 llags~dg~I~iwDl~s~~~~~~l~~h~~~V~sl~~spd---g~~LasgsDg------~I~IwDl~s~~-~~~~i~~~~~ 766 (837)
...+..+..|+.|+|. ..+|++|+|. .++||...... +...+.++..
T Consensus 165 -----------------------p~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d 221 (361)
T KOG2445|consen 165 -----------------------PGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPD 221 (361)
T ss_pred -----------------------cccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCC
Confidence 1125566778888874 4578888865 89999887654 5567778889
Q ss_pred CCCceEEEEEeCCC----CEEEEEEcCCeEEEEECCCCc--------------------EE-EeccCCCCeeEEEEeCCC
Q 003236 767 TGNKFHSCVFHPTF----PSLLVIGCYETLELWNMTENK--------------------TL-TLSAHDKLVSSLAASTVN 821 (837)
Q Consensus 767 ~~~~I~sv~fspdg----~~L~sgs~dg~I~IwDl~s~~--------------------~~-~l~~h~~~V~sla~spdg 821 (837)
+..+|++++|.|+- ..|++++.|| |+||.+.... .+ .+..|.+.|+.+.|+-.|
T Consensus 222 ~~dpI~di~wAPn~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtG 300 (361)
T KOG2445|consen 222 HTDPIRDISWAPNIGRSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTG 300 (361)
T ss_pred CCCcceeeeeccccCCceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeee
Confidence 99999999999963 5688999999 9999987311 11 467899999999999999
Q ss_pred CEEEEEECCCcEEEeC
Q 003236 822 GMVASASHDKCVKIWK 837 (837)
Q Consensus 822 ~~LaSgs~DG~I~IWd 837 (837)
..|++.++||.|++|+
T Consensus 301 tiLsStGdDG~VRLWk 316 (361)
T KOG2445|consen 301 TILSSTGDDGCVRLWK 316 (361)
T ss_pred eEEeecCCCceeeehh
Confidence 9999999999999996
|
|
| >KOG2055 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.88 E-value=3.6e-21 Score=205.32 Aligned_cols=277 Identities=15% Similarity=0.219 Sum_probs=223.5
Q ss_pred CCccccCCCeEEcccCCCceEEeecCCCCCCCCccccccccCCCeeeeEEEEecCCCCCeEEEEEcCCCC-EEEEEECCC
Q 003236 499 PNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGK-LLATGGHDK 577 (837)
Q Consensus 499 ~~~l~~~~~~v~~Gs~D~~v~~w~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~H~~~V~sl~fSpdg~-~Lasgs~Dg 577 (837)
+..+.+...++.++++|+++++|..... .-..++.+.--..+|.+++|.|+|. .+++++...
T Consensus 218 sv~FHp~~plllvaG~d~~lrifqvDGk-----------------~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrk 280 (514)
T KOG2055|consen 218 SVQFHPTAPLLLVAGLDGTLRIFQVDGK-----------------VNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRK 280 (514)
T ss_pred EEEecCCCceEEEecCCCcEEEEEecCc-----------------cChhheeeeeccCccceeeecCCCceEEEecccce
Confidence 3344445578899999999999965432 2224556666678899999999999 899999999
Q ss_pred cEEEEeCCCCeEEE--EeccCC-CCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeEEeeccccceEEEEEcCCCCe
Q 003236 578 KAVLWCTESFTVKS--TLEEHT-QWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKED 654 (837)
Q Consensus 578 ~I~VWd~~t~~~~~--~l~~h~-~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~sl~fspdg~~ 654 (837)
.++.||+.+.+... .+.++. ..+.....++++++|+..+..|.|.|....++.. +..+. -.+.|..++|+.++..
T Consensus 281 y~ysyDle~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~el-i~s~K-ieG~v~~~~fsSdsk~ 358 (514)
T KOG2055|consen 281 YLYSYDLETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKEL-ITSFK-IEGVVSDFTFSSDSKE 358 (514)
T ss_pred EEEEeeccccccccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhh-hheee-eccEEeeEEEecCCcE
Confidence 99999998876543 333443 4577888999999999999999999999988664 44444 5678999999999876
Q ss_pred EEEEEeCCCcEEEEECCCCeeeeEEecCCCe--eEEEEecCCCEEEEEEcCCeEEEEECCC------CeEEEEEcCCCCC
Q 003236 655 LLCSCDNNSEIRYWSINNGSCAGVFKCQSGA--TQMRFQPRLGRILAAAIENYISILDVET------QVCRLKLQGHKNQ 726 (837)
Q Consensus 655 llasgs~Dg~I~vwDl~t~~~i~~~~~~~~i--~sl~~sp~g~~llags~dg~I~iwDl~s------~~~~~~l~~h~~~ 726 (837)
++++| .+|.|++||++...|++.+...+.+ ++++.++++.++++|+..|.|.|||.++ .+++..+..-...
T Consensus 359 l~~~~-~~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~ 437 (514)
T KOG2055|consen 359 LLASG-GTGEVYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLTTA 437 (514)
T ss_pred EEEEc-CCceEEEEecCCcceEEEEeecCccceeeeeecCCCceEEeccCcceEEEeccchhhccCCCCchhhhhhhhee
Confidence 66555 4889999999999999999887765 4677779999999999999999999654 4667777777789
Q ss_pred EEEEEEcCCCCEEEEEe---CCeEEEEEcCCCCCceeEEEeec---CCCceEEEEEeCCCCEEEEEEcCCeEEEEECC
Q 003236 727 VHSVCWNTSGEYLASVS---DELVRVWSIGSGSKGECIHELSC---TGNKFHSCVFHPTFPSLLVIGCYETLELWNMT 798 (837)
Q Consensus 727 V~sl~~spdg~~Lasgs---Dg~I~IwDl~s~~~~~~i~~~~~---~~~~I~sv~fspdg~~L~sgs~dg~I~IwDl~ 798 (837)
|+++.|++|..+|+.++ +..+++-.+.+. .....+.. .-+.++|++|+|.+.++++|...|.|.+|.+.
T Consensus 438 Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~---TVFsNfP~~n~~vg~vtc~aFSP~sG~lAvGNe~grv~l~kL~ 512 (514)
T KOG2055|consen 438 ITSLQFNHDAQILAIASRVKKNALRLVHVPSC---TVFSNFPTSNTKVGHVTCMAFSPNSGYLAVGNEAGRVHLFKLH 512 (514)
T ss_pred eeeeeeCcchhhhhhhhhccccceEEEeccce---eeeccCCCCCCcccceEEEEecCCCceEEeecCCCceeeEeec
Confidence 99999999999999998 668999998776 33333333 34568999999999999999999999999874
|
|
| >KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.88 E-value=5.7e-23 Score=228.68 Aligned_cols=239 Identities=26% Similarity=0.414 Sum_probs=216.0
Q ss_pred EEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEc
Q 003236 547 EFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDT 626 (837)
Q Consensus 547 ~~~~l~~H~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl 626 (837)
+.+.+..|...|.|+..-..++.+++|+.|..+-+|.+.....+..+.+|..+|.+|.|+++..+|++|+.+|+|++||+
T Consensus 20 ~~~~~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~S~~~hespIeSl~f~~~E~LlaagsasgtiK~wDl 99 (825)
T KOG0267|consen 20 DTREFVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAITSLTGHESPIESLTFDTSERLLAAGSASGTIKVWDL 99 (825)
T ss_pred cchhhhhhhhhhceeeeeccceeeccCCCceeeccccccCCchhheeeccCCcceeeecCcchhhhcccccCCceeeeeh
Confidence 34556789999999999888899999999999999999988888889999999999999999999999999999999999
Q ss_pred CCCCceeEEeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeeEEecC-CCeeEEEEecCCCEEEEEEcCCe
Q 003236 627 ENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ-SGATQMRFQPRLGRILAAAIENY 705 (837)
Q Consensus 627 ~~~~~~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~~-~~i~sl~~sp~g~~llags~dg~ 705 (837)
+..+. ++++.+|...+.++.|+|-+. ++++|+.|+.+++||++...|.+.+..+ ..+.+++|+|+|.+++.++.|..
T Consensus 100 eeAk~-vrtLtgh~~~~~sv~f~P~~~-~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~~l~lsP~Gr~v~~g~ed~t 177 (825)
T KOG0267|consen 100 EEAKI-VRTLTGHLLNITSVDFHPYGE-FFASGSTDTDLKIWDIRKKGCSHTYKSHTRVVDVLRLSPDGRWVASGGEDNT 177 (825)
T ss_pred hhhhh-hhhhhccccCcceeeeccceE-EeccccccccceehhhhccCceeeecCCcceeEEEeecCCCceeeccCCcce
Confidence 98664 889999999999999999976 5589999999999999988888888753 45788999999999999999999
Q ss_pred EEEEECCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEE
Q 003236 706 ISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLL 784 (837)
Q Consensus 706 I~iwDl~s~~~~~~l~~h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fspdg~~L~ 784 (837)
++|||+..++....|..|+..|.++.|+|..-+++.|+ |++|++||+++. ..+.........|.+..|+|++..++
T Consensus 178 vki~d~~agk~~~ef~~~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dletf---e~I~s~~~~~~~v~~~~fn~~~~~~~ 254 (825)
T KOG0267|consen 178 VKIWDLTAGKLSKEFKSHEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLETF---EVISSGKPETDGVRSLAFNPDGKIVL 254 (825)
T ss_pred eeeecccccccccccccccccccccccCchhhhhccCCCCceeeeecccee---EEeeccCCccCCceeeeecCCceeee
Confidence 99999999999999999999999999999999999999 999999999876 66666666778899999999999777
Q ss_pred EEEcCC
Q 003236 785 VIGCYE 790 (837)
Q Consensus 785 sgs~dg 790 (837)
+|....
T Consensus 255 ~G~q~s 260 (825)
T KOG0267|consen 255 SGEQIS 260 (825)
T ss_pred cCchhh
Confidence 776553
|
|
| >KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown] | Back alignment and domain information |
|---|
Probab=99.88 E-value=2e-19 Score=193.40 Aligned_cols=288 Identities=12% Similarity=0.153 Sum_probs=228.9
Q ss_pred cccCCCeeeeEEEEecCCC-CCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEeccCCCCeEEEEEcCCCCEEEEE
Q 003236 537 AEVGKGFTFTEFQLIPAST-SKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATS 615 (837)
Q Consensus 537 ~~~~~g~~~~~~~~l~~H~-~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latg 615 (837)
|....+..++....++.+. .-|.|++|.++|. +++|..+|.|.||+..+.+..+....|.+.|.+++...+|.+| +|
T Consensus 227 w~~~~~~l~k~~~~fek~ekk~Vl~v~F~engd-viTgDS~G~i~Iw~~~~~~~~k~~~aH~ggv~~L~~lr~Gtll-SG 304 (626)
T KOG2106|consen 227 WTLRGGSLVKRQGIFEKREKKFVLCVTFLENGD-VITGDSGGNILIWSKGTNRISKQVHAHDGGVFSLCMLRDGTLL-SG 304 (626)
T ss_pred EEccCCceEEEeeccccccceEEEEEEEcCCCC-EEeecCCceEEEEeCCCceEEeEeeecCCceEEEEEecCccEe-ec
Confidence 4445555556666666554 5699999999984 7789999999999998888887777999999999999998755 59
Q ss_pred eCCCeEEEEEcCCCCceeEEeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeeEEecCCCeeEEEEecCCC
Q 003236 616 SADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLG 695 (837)
Q Consensus 616 s~Dg~I~IWDl~~~~~~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~~~~i~sl~~sp~g~ 695 (837)
+.|..|..||-.-.+..-..+....+.|..++-.. .. ++.|...+.|..=.+.++-.+..+.+......++.+|+.+
T Consensus 305 gKDRki~~Wd~~y~k~r~~elPe~~G~iRtv~e~~--~d-i~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~ 381 (626)
T KOG2106|consen 305 GKDRKIILWDDNYRKLRETELPEQFGPIRTVAEGK--GD-ILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSKN 381 (626)
T ss_pred CccceEEeccccccccccccCchhcCCeeEEecCC--Cc-EEEeeccceEEEeeecCCceEEEEecccceeeEEcCCChh
Confidence 99999999994332322233444557777776443 33 4466667778777888888888888888899999999999
Q ss_pred EEEEEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEE
Q 003236 696 RILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSC 774 (837)
Q Consensus 696 ~llags~dg~I~iwDl~s~~~~~~l~~h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv 774 (837)
.+++++.|+.+++|+ ..+++.+.. ...++.|+.|+|.| .++.|. .|...|.|.++. ..+..... ..+++++
T Consensus 382 q~~T~gqdk~v~lW~--~~k~~wt~~-~~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~---~lv~~~~d-~~~ls~v 453 (626)
T KOG2106|consen 382 QLLTCGQDKHVRLWN--DHKLEWTKI-IEDPAECADFHPSG-VVAVGTATGRWFVLDTETQ---DLVTIHTD-NEQLSVV 453 (626)
T ss_pred heeeccCcceEEEcc--CCceeEEEE-ecCceeEeeccCcc-eEEEeeccceEEEEecccc---eeEEEEec-CCceEEE
Confidence 999999999999999 444444443 45789999999999 888888 999999999874 44444444 8899999
Q ss_pred EEeCCCCEEEEEEcCCeEEEEECCCCcE-E-Ee-ccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 003236 775 VFHPTFPSLLVIGCYETLELWNMTENKT-L-TL-SAHDKLVSSLAASTVNGMVASASHDKCVKIWK 837 (837)
Q Consensus 775 ~fspdg~~L~sgs~dg~I~IwDl~s~~~-~-~l-~~h~~~V~sla~spdg~~LaSgs~DG~I~IWd 837 (837)
.|+|+|.+|++|+.|+.|+||-+..+.. + +. ..|..+|+.+.|++|+++|.+-+-|-.|..|+
T Consensus 454 ~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~~gs~ithLDwS~Ds~~~~~~S~d~eiLyW~ 519 (626)
T KOG2106|consen 454 RYSPDGAFLAVGSHDNHIYIYRVSANGRKYSRVGKCSGSPITHLDWSSDSQFLVSNSGDYEILYWK 519 (626)
T ss_pred EEcCCCCEEEEecCCCeEEEEEECCCCcEEEEeeeecCceeEEeeecCCCceEEeccCceEEEEEc
Confidence 9999999999999999999999865443 3 22 24458999999999999999999999999994
|
|
| >KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.88 E-value=8.1e-23 Score=227.51 Aligned_cols=253 Identities=21% Similarity=0.366 Sum_probs=222.9
Q ss_pred CCEEEEEECCCcEEEEeCCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeEEeeccccceEEE
Q 003236 567 GKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSL 646 (837)
Q Consensus 567 g~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~sl 646 (837)
+.+++.+..+-.++|||... +..|...|.|+..-..++.+++|+.|..+-+|.+..... +..+.+|..+|.|+
T Consensus 4 ~~~~m~~~~~t~Lr~~~~~~------~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~-i~S~~~hespIeSl 76 (825)
T KOG0267|consen 4 MEFLMKTKRATKLRVWDTRE------FVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNA-ITSLTGHESPIESL 76 (825)
T ss_pred ccccceeeeeeccccccchh------hhhhhhhhceeeeeccceeeccCCCceeeccccccCCch-hheeeccCCcceee
Confidence 34455556666778888653 446888899998877889999999999999999987654 66799999999999
Q ss_pred EEcCCCCeEEEEEeCCCcEEEEECCCCeeeeEEec-CCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEcCCCC
Q 003236 647 DFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKN 725 (837)
Q Consensus 647 ~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~-~~~i~sl~~sp~g~~llags~dg~I~iwDl~s~~~~~~l~~h~~ 725 (837)
.|++. ..+|++|+.+|+|++||++..+.++++.+ ...+.++.|+|.+.+++.++.|..+.+||.+..-|.+.+.+|..
T Consensus 77 ~f~~~-E~LlaagsasgtiK~wDleeAk~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~ 155 (825)
T KOG0267|consen 77 TFDTS-ERLLAAGSASGTIKVWDLEEAKIVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHTYKSHTR 155 (825)
T ss_pred ecCcc-hhhhcccccCCceeeeehhhhhhhhhhhccccCcceeeeccceEEeccccccccceehhhhccCceeeecCCcc
Confidence 99998 45888999999999999999998887765 45789999999999999999999999999999999999999999
Q ss_pred CEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE-
Q 003236 726 QVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL- 803 (837)
Q Consensus 726 ~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fspdg~~L~sgs~dg~I~IwDl~s~~~~- 803 (837)
.|.++.|+|+|++++.++ |..++|||+..+ +.+.+|..|...+..+.|+|..-.++.|+.|++|++||+++.+.+
T Consensus 156 vv~~l~lsP~Gr~v~~g~ed~tvki~d~~ag---k~~~ef~~~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dletfe~I~ 232 (825)
T KOG0267|consen 156 VVDVLRLSPDGRWVASGGEDNTVKIWDLTAG---KLSKEFKSHEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLETFEVIS 232 (825)
T ss_pred eeEEEeecCCCceeeccCCcceeeeeccccc---ccccccccccccccccccCchhhhhccCCCCceeeeeccceeEEee
Confidence 999999999999999999 799999999888 788899999999999999999999999999999999999988877
Q ss_pred EeccCCCCeeEEEEeCCCCEEEEEECC
Q 003236 804 TLSAHDKLVSSLAASTVNGMVASASHD 830 (837)
Q Consensus 804 ~l~~h~~~V~sla~spdg~~LaSgs~D 830 (837)
........|.+++|++++..+++|..+
T Consensus 233 s~~~~~~~v~~~~fn~~~~~~~~G~q~ 259 (825)
T KOG0267|consen 233 SGKPETDGVRSLAFNPDGKIVLSGEQI 259 (825)
T ss_pred ccCCccCCceeeeecCCceeeecCchh
Confidence 455557889999999999999888654
|
|
| >KOG1539 consensus WD repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.87 E-value=8.1e-20 Score=206.65 Aligned_cols=276 Identities=19% Similarity=0.300 Sum_probs=223.8
Q ss_pred CCeEEEEEcCCC--CEEEEEECCCcEEEEeCCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCcee
Q 003236 556 SKVESCHFSPDG--KLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSL 633 (837)
Q Consensus 556 ~~V~sl~fSpdg--~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~~~~~~ 633 (837)
+.|+++. +|+. +.++.|+.+|.+.||++.+++.+.++.++...|+++.=+|--..++.|..+|+|.|+++..++. +
T Consensus 160 ~~Ital~-HP~TYLNKIvvGs~~G~lql~Nvrt~K~v~~f~~~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~dki-l 237 (910)
T KOG1539|consen 160 DFITALL-HPSTYLNKIVVGSSQGRLQLWNVRTGKVVYTFQEFFSRITAIEQSPALDVVAIGLENGTVIIFNLKFDKI-L 237 (910)
T ss_pred CceeeEe-cchhheeeEEEeecCCcEEEEEeccCcEEEEecccccceeEeccCCcceEEEEeccCceEEEEEcccCcE-E
Confidence 3377764 5543 3588999999999999999999999999999999999999888999999999999999998764 6
Q ss_pred EEeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeeEEec--CCCeeEEEEecCCCEEEEEEcCCeEEEE--
Q 003236 634 RTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC--QSGATQMRFQPRLGRILAAAIENYISIL-- 709 (837)
Q Consensus 634 ~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~--~~~i~sl~~sp~g~~llags~dg~I~iw-- 709 (837)
..+....+.|++++|..||..++++++..|.+.+||++..+.+..... .+.+....|.+....+++++.|+.+++|
T Consensus 238 ~sFk~d~g~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~vf 317 (910)
T KOG1539|consen 238 MSFKQDWGRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLPGEPVLVTAGADNSLKVWVF 317 (910)
T ss_pred EEEEccccceeEEEeccCCCeeEEeccCCceEEEEEcCCCeeeeeeeccccCCcccceecCCCceEeeccCCCceeEEEe
Confidence 666644599999999999999999999999999999999888777663 4677788888877777777777765554
Q ss_pred ECCCCe--EE----------------------------------------------------------------------
Q 003236 710 DVETQV--CR---------------------------------------------------------------------- 717 (837)
Q Consensus 710 Dl~s~~--~~---------------------------------------------------------------------- 717 (837)
|...+. .+
T Consensus 318 D~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~ 397 (910)
T KOG1539|consen 318 DSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPP 397 (910)
T ss_pred eCCCCcchheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCc
Confidence 411110 00
Q ss_pred ---------------------------------------EEEcCCC------CCEEEEEEcCCCCEEEEEe-CCeEEEEE
Q 003236 718 ---------------------------------------LKLQGHK------NQVHSVCWNTSGEYLASVS-DELVRVWS 751 (837)
Q Consensus 718 ---------------------------------------~~l~~h~------~~V~sl~~spdg~~Lasgs-Dg~I~IwD 751 (837)
+.+ .+. ..+++++.++.|++.+.|. .|.|.+|+
T Consensus 398 i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L-~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fN 476 (910)
T KOG1539|consen 398 IVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVL-DPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFN 476 (910)
T ss_pred ceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEe-cCccccccCcceEEEEEeccCceEEEeccCCeEEEEE
Confidence 000 011 3567888888999998888 88999999
Q ss_pred cCCCCCceeEEEe---ecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcE--------------------------
Q 003236 752 IGSGSKGECIHEL---SCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKT-------------------------- 802 (837)
Q Consensus 752 l~s~~~~~~i~~~---~~~~~~I~sv~fspdg~~L~sgs~dg~I~IwDl~s~~~-------------------------- 802 (837)
+.++ .....+ ..|..+|+.++...-++.+++++.+|.+.+||..+..+
T Consensus 477 mQSG---i~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~~~ 553 (910)
T KOG1539|consen 477 MQSG---IHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSDLLAIAL 553 (910)
T ss_pred cccC---eeecccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCcceeeeeccCCCcceeeeeehhhhhhhhc
Confidence 9988 334444 57899999999999999999999999999999865430
Q ss_pred ---------------E-EeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 003236 803 ---------------L-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 837 (837)
Q Consensus 803 ---------------~-~l~~h~~~V~sla~spdg~~LaSgs~DG~I~IWd 837 (837)
+ .+.+|.+.|++++|||||++|++++.|++|++||
T Consensus 554 ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrWlisasmD~tIr~wD 604 (910)
T KOG1539|consen 554 DDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRWLISASMDSTIRTWD 604 (910)
T ss_pred CceeEEEEEchhhhhhHHhhccccceeeeEeCCCCcEEEEeecCCcEEEEe
Confidence 0 2456999999999999999999999999999998
|
|
| >KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.6e-20 Score=192.16 Aligned_cols=234 Identities=18% Similarity=0.273 Sum_probs=191.0
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeEEeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCee
Q 003236 596 HTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSC 675 (837)
Q Consensus 596 h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~ 675 (837)
..+.|.+|.|+|.+..|+++++||++++||+.... ++....|..++.+++|.++. -+++|+.||.|+.+|+.++..
T Consensus 12 P~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~--l~~~~~~~~plL~c~F~d~~--~~~~G~~dg~vr~~Dln~~~~ 87 (323)
T KOG1036|consen 12 PEDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANS--LKLKFKHGAPLLDCAFADES--TIVTGGLDGQVRRYDLNTGNE 87 (323)
T ss_pred ChhceeeEEEcCcCCcEEEEeccCcEEEEeccchh--hhhheecCCceeeeeccCCc--eEEEeccCceEEEEEecCCcc
Confidence 36789999999999999999999999999999763 45555689999999999753 456899999999999999998
Q ss_pred eeEEecCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCC
Q 003236 676 AGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGS 754 (837)
Q Consensus 676 i~~~~~~~~i~sl~~sp~g~~llags~dg~I~iwDl~s~~~~~~l~~h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s 754 (837)
...-.+..++.|+.+.+..+.+++|+.|+.|++||.+....+..+. ....|.++... ++.|++|. |..|.+||+++
T Consensus 88 ~~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d-~~kkVy~~~v~--g~~LvVg~~~r~v~iyDLRn 164 (323)
T KOG1036|consen 88 DQIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFD-QGKKVYCMDVS--GNRLVVGTSDRKVLIYDLRN 164 (323)
T ss_pred eeeccCCCceEEEEeeccCCeEEEcccCccEEEEeccccccccccc-cCceEEEEecc--CCEEEEeecCceEEEEEccc
Confidence 8888889999999999999999999999999999999865555554 34478888764 55666655 99999999998
Q ss_pred CCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCC-----cEEEeccCC---------CCeeEEEEeCC
Q 003236 755 GSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTEN-----KTLTLSAHD---------KLVSSLAASTV 820 (837)
Q Consensus 755 ~~~~~~i~~~~~~~~~I~sv~fspdg~~L~sgs~dg~I~IwDl~s~-----~~~~l~~h~---------~~V~sla~spd 820 (837)
..... ...-......+.++++-|++.-+++++-||.|.+=.++.. +...+..|. -+|++|+|+|-
T Consensus 165 ~~~~~-q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~ 243 (323)
T KOG1036|consen 165 LDEPF-QRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPI 243 (323)
T ss_pred ccchh-hhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEeccc
Confidence 75422 1222334567899999998888999999997776555443 233555663 26999999999
Q ss_pred CCEEEEEECCCcEEEeC
Q 003236 821 NGMVASASHDKCVKIWK 837 (837)
Q Consensus 821 g~~LaSgs~DG~I~IWd 837 (837)
...||||+.||.|.+||
T Consensus 244 ~~tfaTgGsDG~V~~Wd 260 (323)
T KOG1036|consen 244 HGTFATGGSDGIVNIWD 260 (323)
T ss_pred cceEEecCCCceEEEcc
Confidence 99999999999999997
|
|
| >KOG0646 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.2e-20 Score=200.02 Aligned_cols=258 Identities=13% Similarity=0.185 Sum_probs=204.1
Q ss_pred EECC-CcEEEEeCCCCeEEEEeccC-CCCeEEEEEcCCCCEEEEEeC-CCeEEEEEcCCCCceeEEeeccccceEEEEEc
Q 003236 573 GGHD-KKAVLWCTESFTVKSTLEEH-TQWITDVRFSPSLSRLATSSA-DRTVRVWDTENPDYSLRTFTGHSTTVMSLDFH 649 (837)
Q Consensus 573 gs~D-g~I~VWd~~t~~~~~~l~~h-~~~I~~l~fspdg~~Latgs~-Dg~I~IWDl~~~~~~~~~~~~h~~~V~sl~fs 649 (837)
++.| ..+.+||+.+|.....+++. ...-.++... .+.+++++.. ...|.+|.+....... .+.--.++|.+++-+
T Consensus 13 sS~d~~~~~~~dl~TGt~~~~ykg~~~a~~~sl~~l-~~~yllsaq~~rp~l~vw~i~k~~~~~-q~~v~Pg~v~al~s~ 90 (476)
T KOG0646|consen 13 SSFDPINCIVWDLRTGTSLLQYKGSYLAQAASLTAL-NNEYLLSAQLKRPLLHVWEILKKDQVV-QYIVLPGPVHALASS 90 (476)
T ss_pred cCCCCcceeEEecCCCceeEEecCcccccchhhhhh-chhheeeecccCccccccccCchhhhh-hhcccccceeeeecC
Confidence 3444 45999999999999888754 2111122211 2356666654 4579999988654322 344456889999999
Q ss_pred CCCCeEEEEEeCCCcEEEEECCCCeeeeEEec-CCCeeEEEEecCCCEEEEEEcCCeEEEEECC---------CCeEEEE
Q 003236 650 PSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAIENYISILDVE---------TQVCRLK 719 (837)
Q Consensus 650 pdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~-~~~i~sl~~sp~g~~llags~dg~I~iwDl~---------s~~~~~~ 719 (837)
|+|. +++.|+..|.|++|.+.+|..+..+.. -..|+|+.|+.|+.+|++++.||.|.+|++- +-++++.
T Consensus 91 n~G~-~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~ 169 (476)
T KOG0646|consen 91 NLGY-FLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHI 169 (476)
T ss_pred CCce-EEEeecccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeecccccCCCccceee
Confidence 9976 454666889999999999999988864 4579999999999999999999999999763 3467888
Q ss_pred EcCCCCCEEEEEEcCC--CCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEE
Q 003236 720 LQGHKNQVHSVCWNTS--GEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWN 796 (837)
Q Consensus 720 l~~h~~~V~sl~~spd--g~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fspdg~~L~sgs~dg~I~IwD 796 (837)
+..|.-+|+++...+. ..+|++++ |.++++||+..+ ..+.++. ....+.+|+.+|.+..+++|+.+|.|.+.+
T Consensus 170 f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g---~LLlti~-fp~si~av~lDpae~~~yiGt~~G~I~~~~ 245 (476)
T KOG0646|consen 170 FSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLG---VLLLTIT-FPSSIKAVALDPAERVVYIGTEEGKIFQNL 245 (476)
T ss_pred eccCcceeEEEEecCCCccceEEEecCCceEEEEEeccc---eeeEEEe-cCCcceeEEEcccccEEEecCCcceEEeee
Confidence 9999999999988765 45788888 999999999988 4554443 367899999999999999999999999988
Q ss_pred CCCCc-----------------EEEeccCCC--CeeEEEEeCCCCEEEEEECCCcEEEeC
Q 003236 797 MTENK-----------------TLTLSAHDK--LVSSLAASTVNGMVASASHDKCVKIWK 837 (837)
Q Consensus 797 l~s~~-----------------~~~l~~h~~--~V~sla~spdg~~LaSgs~DG~I~IWd 837 (837)
+.... ...+.+|.+ .|+|++++-||.+|++|+.||.|+|||
T Consensus 246 ~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWd 305 (476)
T KOG0646|consen 246 LFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWD 305 (476)
T ss_pred hhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEe
Confidence 74432 125678888 999999999999999999999999997
|
|
| >KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription] | Back alignment and domain information |
|---|
Probab=99.86 E-value=4.3e-20 Score=205.23 Aligned_cols=345 Identities=16% Similarity=0.238 Sum_probs=252.6
Q ss_pred ccCCCCCceEEEEecCCCCCcccCCCccccCC---------------CeEEcccCCCceEEeecCCCCCCCCcccccccc
Q 003236 475 QHNGASSKSLLMFGSDGMGSLTSAPNQLTDMD---------------RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEV 539 (837)
Q Consensus 475 ~~~~s~~~s~~~~~~~~~~~~~~~~~~l~~~~---------------~~v~~Gs~D~~v~~w~s~~~~~~~~~~~~~~~~ 539 (837)
..+++.++++|.|.++...+......++..+. .++.+-+..+..+ +|..
T Consensus 282 LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~h----------------lWkt 345 (764)
T KOG1063|consen 282 LLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGGFH----------------LWKT 345 (764)
T ss_pred heecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEecccCcEE----------------EEec
Confidence 44567789999999988755444443333322 2222222333333 3332
Q ss_pred CCCeeeeEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCC----CCeEEEEeccCCCCeEEEEEcCCCCEEEEE
Q 003236 540 GKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTE----SFTVKSTLEEHTQWITDVRFSPSLSRLATS 615 (837)
Q Consensus 540 ~~g~~~~~~~~l~~H~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~----t~~~~~~l~~h~~~I~~l~fspdg~~Latg 615 (837)
.+...+.....+.||.+.|..|+|+|.|++|++.+.|-+-+||-.- +...+..-..|...++|++|-+....+++|
T Consensus 346 ~d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn~~~~FVSg 425 (764)
T KOG1063|consen 346 KDKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFVNEDLQFVSG 425 (764)
T ss_pred cCccceeeccccccccccceeeeecCCCCEEEEeccccceeeecccccccceeeecccccccccceeeehccCCceeeec
Confidence 3334455666788999999999999999999999999999998643 123334445688899999999877788999
Q ss_pred eCCCeEEEEEcCC-------------------------------------------CC----------------------
Q 003236 616 SADRTVRVWDTEN-------------------------------------------PD---------------------- 630 (837)
Q Consensus 616 s~Dg~I~IWDl~~-------------------------------------------~~---------------------- 630 (837)
...+.+|+|+... +.
T Consensus 426 AdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~ 505 (764)
T KOG1063|consen 426 ADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPT 505 (764)
T ss_pred ccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhccCCCh
Confidence 9999999997540 00
Q ss_pred ----------ceeEEeeccccceEEEEEcCCCCeEEEEEeCC-----CcEEEEECCCCeeeeEEec-CCCeeEEEEecCC
Q 003236 631 ----------YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN-----SEIRYWSINNGSCAGVFKC-QSGATQMRFQPRL 694 (837)
Q Consensus 631 ----------~~~~~~~~h~~~V~sl~fspdg~~llasgs~D-----g~I~vwDl~t~~~i~~~~~-~~~i~sl~~sp~g 694 (837)
..+..+.||...|++++.+|+++ ++++++.. ..|++|+..+...+..+.. .-.|+.++|+|++
T Consensus 506 EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gn-liASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~FSpdg 584 (764)
T KOG1063|consen 506 EDQLQQNTLWPEVHKLYGHGYEVYALAISPTGN-LIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRLAFSPDG 584 (764)
T ss_pred HHHHHHhccchhhHHhccCceeEEEEEecCCCC-EEeehhhhCCccceEEEEEeccchhhhheecccceEEEEEEECCCC
Confidence 01234567999999999999976 67677543 4699999998887776654 4569999999999
Q ss_pred CEEEEEEcCCeEEEEECCCCe----EEEEEcCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEE--EeecC
Q 003236 695 GRILAAAIENYISILDVETQV----CRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIH--ELSCT 767 (837)
Q Consensus 695 ~~llags~dg~I~iwDl~s~~----~~~~l~~h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~--~~~~~ 767 (837)
++|++++.|.++.+|...... .....+.|..-|.++.|+|++.++++++ |.+|+||....... +.+. ....+
T Consensus 585 ~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~~~~~d-~~i~~~a~~~~ 663 (764)
T KOG1063|consen 585 RYLLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWEEPDLRD-KYISRFACLKF 663 (764)
T ss_pred cEEEEeecCceEEeeeeecccchhhhhccccccceEEEEcccCcccceeEEecCCceEEEEeccCchh-hhhhhhchhcc
Confidence 999999999999999875431 1233667999999999999999999999 99999999877631 2222 23346
Q ss_pred CCceEEEEEeCC-----CCEEEEEEcCCeEEEEECC------C-CcEE------EeccCCCCeeEEEEeCCC--------
Q 003236 768 GNKFHSCVFHPT-----FPSLLVIGCYETLELWNMT------E-NKTL------TLSAHDKLVSSLAASTVN-------- 821 (837)
Q Consensus 768 ~~~I~sv~fspd-----g~~L~sgs~dg~I~IwDl~------s-~~~~------~l~~h~~~V~sla~spdg-------- 821 (837)
...|+.++|.|- +..+++|-..|.|.+|... + +... ...+|...|+.+.|.|..
T Consensus 664 ~~aVTAv~~~~~~~~e~~~~vavGle~GeI~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~aV~rl~w~p~~~~~~~~~~ 743 (764)
T KOG1063|consen 664 SLAVTAVAYLPVDHNEKGDVVAVGLEKGEIVLWRRKREHRQVTVGTFNLDTRLCATIGPDSAVNRLLWRPTCSDDWVEDK 743 (764)
T ss_pred CCceeeEEeeccccccccceEEEEecccEEEEEecccccccccceeeeeccccccccChHHhhheeEecccccccccccc
Confidence 778899988763 2367788889999999865 1 1111 234677889999999752
Q ss_pred --CEEEEEECCCcEEEeC
Q 003236 822 --GMVASASHDKCVKIWK 837 (837)
Q Consensus 822 --~~LaSgs~DG~I~IWd 837 (837)
..|++|++|..++|++
T Consensus 744 ~~l~la~~g~D~~vri~n 761 (764)
T KOG1063|consen 744 EWLNLAVGGDDESVRIFN 761 (764)
T ss_pred ceeEEeeecccceeEEee
Confidence 2679999999999985
|
|
| >KOG0300 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.2e-20 Score=192.46 Aligned_cols=257 Identities=20% Similarity=0.310 Sum_probs=213.5
Q ss_pred EEEEECCCcEEEEeCCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeEEeeccccceEEEEEc
Q 003236 570 LATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFH 649 (837)
Q Consensus 570 Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~sl~fs 649 (837)
+++.-.++++. ...++.+.+|.+.|+.++.......+.+++.|.+.+||.++++. ++..+.+|.+.|++|+|+
T Consensus 127 ivssFk~~t~~------~~lvre~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~-CL~~Y~GH~GSVNsikfh 199 (481)
T KOG0300|consen 127 IVSSFKDGTVK------FRLVRELEGHKDGIWHVAADSTQPICGTASADHTARIWSLESGA-CLATYTGHTGSVNSIKFH 199 (481)
T ss_pred heeeecCCcee------EeehhhhcccccceeeehhhcCCcceeecccccceeEEeecccc-ceeeecccccceeeEEec
Confidence 44444555532 24567788999999999998877799999999999999999977 489999999999999999
Q ss_pred CCCCeEEEEEeCCCcEEEEEC------CC--------Ce--------------------------eeeEEe-cCCCeeEE
Q 003236 650 PSKEDLLCSCDNNSEIRYWSI------NN--------GS--------------------------CAGVFK-CQSGATQM 688 (837)
Q Consensus 650 pdg~~llasgs~Dg~I~vwDl------~t--------~~--------------------------~i~~~~-~~~~i~sl 688 (837)
+.+. ++++++.|++-.||.. .. ++ ++..+. +...|.+.
T Consensus 200 ~s~~-L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~ 278 (481)
T KOG0300|consen 200 NSGL-LLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSAC 278 (481)
T ss_pred cccc-eEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEeh
Confidence 9865 7779999999999962 11 00 011111 12346677
Q ss_pred EEecCCCEEEEEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecC
Q 003236 689 RFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCT 767 (837)
Q Consensus 689 ~~sp~g~~llags~dg~I~iwDl~s~~~~~~l~~h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~ 767 (837)
.|...+..+++++.|.+-.+||+++++.+..+.+|....+.++-+|..+++++.+ |.+.++||++.. ...+..|.+|
T Consensus 279 dWL~gg~Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFRea--I~sV~VFQGH 356 (481)
T KOG0300|consen 279 DWLAGGQQMVTASWDRTANLWDVETGEVVNILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREA--IQSVAVFQGH 356 (481)
T ss_pred hhhcCcceeeeeeccccceeeeeccCceeccccCcchhccccccCCcceEEEEeccCceeEeccchhh--cceeeeeccc
Confidence 7888889999999999999999999999999999999999999999999999999 999999999843 3678889999
Q ss_pred CCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcE-EEeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 003236 768 GNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKT-LTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 837 (837)
Q Consensus 768 ~~~I~sv~fspdg~~L~sgs~dg~I~IwDl~s~~~-~~l~~h~~~V~sla~spdg~~LaSgs~DG~I~IWd 837 (837)
...|+++.|..+.+ +++|+.|.+|+|||+++.+. +.......+++.++++..+.+|+.--++..|+|||
T Consensus 357 tdtVTS~vF~~dd~-vVSgSDDrTvKvWdLrNMRsplATIRtdS~~NRvavs~g~~iIAiPhDNRqvRlfD 426 (481)
T KOG0300|consen 357 TDTVTSVVFNTDDR-VVSGSDDRTVKVWDLRNMRSPLATIRTDSPANRVAVSKGHPIIAIPHDNRQVRLFD 426 (481)
T ss_pred ccceeEEEEecCCc-eeecCCCceEEEeeeccccCcceeeecCCccceeEeecCCceEEeccCCceEEEEe
Confidence 99999999998876 88999999999999988764 35556678899999998888888888888899987
|
|
| >KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.86 E-value=3.8e-20 Score=187.52 Aligned_cols=208 Identities=20% Similarity=0.332 Sum_probs=175.3
Q ss_pred ccCCCCeEEEEEcC-CCCEEEEEeCCCeEEEEEcCCCC------c-----e---eEEeeccccceEEEEEcCCCCeEEEE
Q 003236 594 EEHTQWITDVRFSP-SLSRLATSSADRTVRVWDTENPD------Y-----S---LRTFTGHSTTVMSLDFHPSKEDLLCS 658 (837)
Q Consensus 594 ~~h~~~I~~l~fsp-dg~~Latgs~Dg~I~IWDl~~~~------~-----~---~~~~~~h~~~V~sl~fspdg~~llas 658 (837)
..|.+.|+++...+ .|+++++|+.||.|.|||+.... . + .....+|...|.++.|.|-...+|.+
T Consensus 40 r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFts 119 (397)
T KOG4283|consen 40 RPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTS 119 (397)
T ss_pred ccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeec
Confidence 35889999999988 69999999999999999997533 0 0 11234688899999999988889999
Q ss_pred EeCCCcEEEEECCCCeeeeEEecCCCeeEEEEecCC---CEEEEEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEcCC
Q 003236 659 CDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRL---GRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTS 735 (837)
Q Consensus 659 gs~Dg~I~vwDl~t~~~i~~~~~~~~i~sl~~sp~g---~~llags~dg~I~iwDl~s~~~~~~l~~h~~~V~sl~~spd 735 (837)
++.|.+++|||.++-.....|+.++.|.+-+++|-. -.|++|..+-.|++.|+.+|.+.+.+.+|...|.++.|+|.
T Consensus 120 sSFDhtlKVWDtnTlQ~a~~F~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vlaV~Wsp~ 199 (397)
T KOG4283|consen 120 SSFDHTLKVWDTNTLQEAVDFKMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVLAVEWSPS 199 (397)
T ss_pred ccccceEEEeecccceeeEEeecCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCceEEEEeccC
Confidence 999999999999999999999999999999999843 35667777889999999999999999999999999999998
Q ss_pred CCEE-EEEe-CCeEEEEEcCCCC------------CceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCc
Q 003236 736 GEYL-ASVS-DELVRVWSIGSGS------------KGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENK 801 (837)
Q Consensus 736 g~~L-asgs-Dg~I~IwDl~s~~------------~~~~i~~~~~~~~~I~sv~fspdg~~L~sgs~dg~I~IwDl~s~~ 801 (837)
.+++ ++|+ ||.|++||++.-. ....+..-..|.+.+..++|..++.++++++.|..+++|+..+|+
T Consensus 200 ~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~~~G~ 279 (397)
T KOG4283|consen 200 SEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWNMESGR 279 (397)
T ss_pred ceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccCccceEEeecccCc
Confidence 8765 4566 9999999998542 111222344567889999999999999999999999999998775
|
|
| >KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription] | Back alignment and domain information |
|---|
Probab=99.85 E-value=5.9e-20 Score=188.92 Aligned_cols=285 Identities=19% Similarity=0.336 Sum_probs=220.2
Q ss_pred EEecCCCCCeEEEEEcC-----CCCEEEEEECCCcEEEEeCCCCe---EEEEe--ccCCCCeEEEEEcCC----CCEEEE
Q 003236 549 QLIPASTSKVESCHFSP-----DGKLLATGGHDKKAVLWCTESFT---VKSTL--EEHTQWITDVRFSPS----LSRLAT 614 (837)
Q Consensus 549 ~~l~~H~~~V~sl~fSp-----dg~~Lasgs~Dg~I~VWd~~t~~---~~~~l--~~h~~~I~~l~fspd----g~~Lat 614 (837)
.....|+.+|..++|++ +-..+|+++. ..|.+|...... .+..+ ..|.+....++|+-+ ..+||.
T Consensus 32 ~l~ed~~~~I~gv~fN~~~~~~e~~vfatvG~-~rvtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~yd~~~~~p~la~ 110 (385)
T KOG1034|consen 32 HLKEDHNKPIFGVAFNSFLGCDEPQVFATVGG-NRVTIYECPGDGGIRLLQSYADEDHDESFYTCSWSYDSNTGNPFLAA 110 (385)
T ss_pred ehhccCCCccceeeeehhcCCCCCceEEEeCC-cEEEEEEECCccceeeeeeccCCCCCcceEEEEEEecCCCCCeeEEe
Confidence 34468899999999985 2235666654 578888765433 22222 247788889999765 447899
Q ss_pred EeCCCeEEEEEcCCCCceeEEeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeeEEec----CCCeeEEEE
Q 003236 615 SSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC----QSGATQMRF 690 (837)
Q Consensus 615 gs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~----~~~i~sl~~ 690 (837)
++.-|.|+|.|+.+.. ....+.+|...|+.|.|+|+...++++++.|..|++|++.+..|+..|.. ...|.++.|
T Consensus 111 ~G~~GvIrVid~~~~~-~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~ 189 (385)
T KOG1034|consen 111 GGYLGVIRVIDVVSGQ-CSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVLSVDF 189 (385)
T ss_pred ecceeEEEEEecchhh-hccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecccccccCcEEEEEE
Confidence 9999999999999866 47889999999999999999999999999999999999999999999874 567999999
Q ss_pred ecCCCEEEEEEcCCeEEEEECCCCe------EE---------------------E-EEcCCCCCEEEEEEcCCCCEEEEE
Q 003236 691 QPRLGRILAAAIENYISILDVETQV------CR---------------------L-KLQGHKNQVHSVCWNTSGEYLASV 742 (837)
Q Consensus 691 sp~g~~llags~dg~I~iwDl~s~~------~~---------------------~-~l~~h~~~V~sl~~spdg~~Lasg 742 (837)
+.++.+|++++.|..|++|++...+ +. . +-..|...|-|+.|- |+++++-
T Consensus 190 ~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~--gd~ilSk 267 (385)
T KOG1034|consen 190 SLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWF--GDFILSK 267 (385)
T ss_pred cCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHHH--hhheeec
Confidence 9999999999999999999998321 10 0 112366677777775 5788887
Q ss_pred e-CCeEEEEEcCC-C----------CCceeEEEeecCCCceEEE--EEeCCCCEEEEEEcCCeEEEEECCCCcEE---Ee
Q 003236 743 S-DELVRVWSIGS-G----------SKGECIHELSCTGNKFHSC--VFHPTFPSLLVIGCYETLELWNMTENKTL---TL 805 (837)
Q Consensus 743 s-Dg~I~IwDl~s-~----------~~~~~i~~~~~~~~~I~sv--~fspdg~~L~sgs~dg~I~IwDl~s~~~~---~l 805 (837)
+ ++.|..|.... . .....+.++......|+-+ +|.+-.+.|+.|...|.|++||++..+.. ++
T Consensus 268 scenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~~ep~~~ttl 347 (385)
T KOG1034|consen 268 SCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLALGNQSGKVYVWDLDNNEPPKCTTL 347 (385)
T ss_pred ccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhhccCCCcEEEEECCCCCCccCceE
Confidence 7 89999998721 1 1112334444444555544 56677899999999999999999887653 22
Q ss_pred --ccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 003236 806 --SAHDKLVSSLAASTVNGMVASASHDKCVKIWK 837 (837)
Q Consensus 806 --~~h~~~V~sla~spdg~~LaSgs~DG~I~IWd 837 (837)
......|...+|+.|+.+|+..++|++|.-||
T Consensus 348 ~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwd 381 (385)
T KOG1034|consen 348 THSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWD 381 (385)
T ss_pred EeccccceeeeeeecccCcEEEEEeCCCcEEEEE
Confidence 23356799999999999999999999999886
|
|
| >KOG4328 consensus WD40 protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.1e-19 Score=194.03 Aligned_cols=294 Identities=18% Similarity=0.260 Sum_probs=213.7
Q ss_pred CeeeeEEEEecCCCCCeEEEEEcCCC--CEEEEEECCCcEEEEeCCC----CeEEEEeccCCCCeEEEEEcC-CCCEEEE
Q 003236 542 GFTFTEFQLIPASTSKVESCHFSPDG--KLLATGGHDKKAVLWCTES----FTVKSTLEEHTQWITDVRFSP-SLSRLAT 614 (837)
Q Consensus 542 g~~~~~~~~l~~H~~~V~sl~fSpdg--~~Lasgs~Dg~I~VWd~~t----~~~~~~l~~h~~~I~~l~fsp-dg~~Lat 614 (837)
...+....+++-|.++|++++|+|.. +++|+|..-|.|-+||+.+ ...+..+..|..+|.++.|+| +...+++
T Consensus 173 l~~~~~~~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~s 252 (498)
T KOG4328|consen 173 LDDYRILNVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYS 252 (498)
T ss_pred cccceecceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheee
Confidence 34455667788899999999999954 5899999999999999942 334566778999999999999 4668999
Q ss_pred EeCCCeEEEEEcCCCCc-eeEEeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCee-eeEEe-cCCCeeEEEEe
Q 003236 615 SSADRTVRVWDTENPDY-SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSC-AGVFK-CQSGATQMRFQ 691 (837)
Q Consensus 615 gs~Dg~I~IWDl~~~~~-~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~-i~~~~-~~~~i~sl~~s 691 (837)
.|+||+|++-|++.... .+.........+.++.|+.+...++ .++.=|...+||++++.. ...+. +...|.+++++
T Consensus 253 sSyDGtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl-~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~N 331 (498)
T KOG4328|consen 253 SSYDGTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVL-FGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALN 331 (498)
T ss_pred eccCceeeeeeecchhhHHHhhcCccceeeeeccccCCCccEE-EeecccceEEEEeecCCccchhhhhhhcccceeecC
Confidence 99999999999987542 1222222445667788887766555 555566999999998664 33333 34589999999
Q ss_pred cCCC-EEEEEEcCCeEEEEECCCCe----EEEEEcCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCC-CCceeEEEe
Q 003236 692 PRLG-RILAAAIENYISILDVETQV----CRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSG-SKGECIHEL 764 (837)
Q Consensus 692 p~g~-~llags~dg~I~iwDl~s~~----~~~~l~~h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~-~~~~~i~~~ 764 (837)
|-.. ++++++.|++++|||++.-. ++.....|...|.+..|||.+-.|++.+ |+.|+|||..-- .......++
T Consensus 332 P~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~~~p~~~I 411 (498)
T KOG4328|consen 332 PVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAKDEPLGTI 411 (498)
T ss_pred CCCchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCCceEEeecccccccCCcccee
Confidence 9655 47788889999999998632 2334456999999999999876677777 999999998411 111222222
Q ss_pred ec---CCC--ceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE-EeccCC-CCeeE-EEEeCCCC-EEEEEECCCcEEE
Q 003236 765 SC---TGN--KFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHD-KLVSS-LAASTVNG-MVASASHDKCVKI 835 (837)
Q Consensus 765 ~~---~~~--~I~sv~fspdg~~L~sgs~dg~I~IwDl~s~~~~-~l~~h~-~~V~s-la~spdg~-~LaSgs~DG~I~I 835 (837)
.. ++. .....+|.|+..+|+++..-..|-|||-..++.+ .+.... ..|.+ ..|+|-+. +++-++..|.|+|
T Consensus 412 ~Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q~v~el~~P~~~tI~~vn~~HP~~~~~~aG~~s~Gki~v 491 (498)
T KOG4328|consen 412 PHNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQMVCELHDPESSTIPSVNEFHPMRDTLAAGGNSSGKIYV 491 (498)
T ss_pred eccCcccccccchhheeCCCccEEEEeccCcceeEEcCCCCEEeeeccCccccccccceeecccccceeccCCccceEEE
Confidence 11 111 2345689999999999999889999999988865 433332 24444 47999887 4444556788988
Q ss_pred e
Q 003236 836 W 836 (837)
Q Consensus 836 W 836 (837)
|
T Consensus 492 f 492 (498)
T KOG4328|consen 492 F 492 (498)
T ss_pred E
Confidence 8
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.85 E-value=9.2e-20 Score=200.52 Aligned_cols=270 Identities=18% Similarity=0.283 Sum_probs=214.3
Q ss_pred CeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeEEe
Q 003236 557 KVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTF 636 (837)
Q Consensus 557 ~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~~~~~~~~~ 636 (837)
.|..++|-|||.-|+.+. +..+.|||...|..+.++++|.+.|+|++|+.||+.+++|+.|+.|.||+-.-.. + ..
T Consensus 14 ci~d~afkPDGsqL~lAA-g~rlliyD~ndG~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG--~-Lk 89 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAA-GSRLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEG--I-LK 89 (1081)
T ss_pred chheeEECCCCceEEEec-CCEEEEEeCCCcccccccccccceEEEEEEccCCceeccCCCceeEEEecccccc--e-ee
Confidence 699999999999888775 4579999999999999999999999999999999999999999999999876433 2 23
Q ss_pred eccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeeEEecCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeE
Q 003236 637 TGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVC 716 (837)
Q Consensus 637 ~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~~~~i~sl~~sp~g~~llags~dg~I~iwDl~s~~~ 716 (837)
..|.+.|.|+.|+|-.. .+++|+- ...-+|.... +.+...+....+.+++|..||.+++.|-.+|+|.|-+-.....
T Consensus 90 YSH~D~IQCMsFNP~~h-~LasCsL-sdFglWS~~q-K~V~K~kss~R~~~CsWtnDGqylalG~~nGTIsiRNk~gEek 166 (1081)
T KOG1538|consen 90 YSHNDAIQCMSFNPITH-QLASCSL-SDFGLWSPEQ-KSVSKHKSSSRIICCSWTNDGQYLALGMFNGTISIRNKNGEEK 166 (1081)
T ss_pred eccCCeeeEeecCchHH-Hhhhcch-hhccccChhh-hhHHhhhhheeEEEeeecCCCcEEEEeccCceEEeecCCCCcc
Confidence 45999999999999855 5667764 3567887764 3344444457789999999999999999999999986543322
Q ss_pred EEEE--cCCCCCEEEEEEcCCC-----CEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEc
Q 003236 717 RLKL--QGHKNQVHSVCWNTSG-----EYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGC 788 (837)
Q Consensus 717 ~~~l--~~h~~~V~sl~~spdg-----~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fspdg~~L~sgs~ 788 (837)
+..- .+..++|.+++|+|.. ..+++.. ..++.+|.+.. ..+..-...+....++.+.++|.++++|++
T Consensus 167 ~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG----~~Igk~r~L~FdP~CisYf~NGEy~LiGGs 242 (1081)
T KOG1538|consen 167 VKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSG----KQIGKDRALNFDPCCISYFTNGEYILLGGS 242 (1081)
T ss_pred eEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEecc----eeecccccCCCCchhheeccCCcEEEEccC
Confidence 2222 2467899999999853 3566666 66777777654 334333444556778999999999999999
Q ss_pred CCeEEEEECCCCcEEEeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 003236 789 YETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 837 (837)
Q Consensus 789 dg~I~IwDl~s~~~~~l~~h~~~V~sla~spdg~~LaSgs~DG~I~IWd 837 (837)
|+.+.+|..+.-.+-++...+..|+.++..|++.+++.|+.||+|-.|+
T Consensus 243 dk~L~~fTR~GvrLGTvg~~D~WIWtV~~~PNsQ~v~~GCqDGTiACyN 291 (1081)
T KOG1538|consen 243 DKQLSLFTRDGVRLGTVGEQDSWIWTVQAKPNSQYVVVGCQDGTIACYN 291 (1081)
T ss_pred CCceEEEeecCeEEeeccccceeEEEEEEccCCceEEEEEccCeeehhh
Confidence 9999999755444446667788999999999999999999999998764
|
|
| >KOG0269 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.85 E-value=9.1e-21 Score=212.85 Aligned_cols=234 Identities=18% Similarity=0.347 Sum_probs=194.2
Q ss_pred CCCeEEcccCCCceEEeecCCCCCCCCccccccccCCCeeeeEEEEecCCCCCeEEEEEcC-CCCEEEEEECCCcEEEEe
Q 003236 505 MDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSP-DGKLLATGGHDKKAVLWC 583 (837)
Q Consensus 505 ~~~~v~~Gs~D~~v~~w~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~H~~~V~sl~fSp-dg~~Lasgs~Dg~I~VWd 583 (837)
.++++++.+..+.|.+|...-. ..-..+..|..|...|++++|++ ...+|++|+.||+|++||
T Consensus 99 ~~NlIAT~s~nG~i~vWdlnk~----------------~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~D 162 (839)
T KOG0269|consen 99 YSNLIATCSTNGVISVWDLNKS----------------IRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWD 162 (839)
T ss_pred hhhhheeecCCCcEEEEecCcc----------------ccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEe
Confidence 3467888888888888855432 11123557889999999999998 455899999999999999
Q ss_pred CCCCeEEEEeccCCCCeEEEEEcC-CCCEEEEEeCCCeEEEEEcCCCCceeEEeeccccceEEEEEcCCCCeEEEEEeCC
Q 003236 584 TESFTVKSTLEEHTQWITDVRFSP-SLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN 662 (837)
Q Consensus 584 ~~t~~~~~~l~~h~~~I~~l~fsp-dg~~Latgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~sl~fspdg~~llasgs~D 662 (837)
+...+-..++.+..+.|.+|.|+| .+.+|+++.+.|.+.+||++....+...+..|.++|.|+.|+|+ ..+||+|+.|
T Consensus 163 lR~~~S~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPn-r~~lATGGRD 241 (839)
T KOG0269|consen 163 LRSKKSKSTFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPN-REWLATGGRD 241 (839)
T ss_pred eecccccccccccchhhhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecCC-CceeeecCCC
Confidence 999888888988999999999999 57889999999999999999988888999999999999999996 5588899999
Q ss_pred CcEEEEECCCCe--eeeEEecCCCeeEEEEecCCCEEEEEEc---CCeEEEEECCCC-eEEEEEcCCCCCEEEEEEcC-C
Q 003236 663 SEIRYWSINNGS--CAGVFKCQSGATQMRFQPRLGRILAAAI---ENYISILDVETQ-VCRLKLQGHKNQVHSVCWNT-S 735 (837)
Q Consensus 663 g~I~vwDl~t~~--~i~~~~~~~~i~sl~~sp~g~~llags~---dg~I~iwDl~s~-~~~~~l~~h~~~V~sl~~sp-d 735 (837)
+.|+|||+.+.+ .+.++....++.++.|-|...+.++.+. |-.|+|||++.. .+..++..|...++.++|.. |
T Consensus 242 K~vkiWd~t~~~~~~~~tInTiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~~~vt~i~W~~~d 321 (839)
T KOG0269|consen 242 KMVKIWDMTDSRAKPKHTINTIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPYATFLEHTDSVTGIAWDSGD 321 (839)
T ss_pred ccEEEEeccCCCccceeEEeecceeeeeeeccCccchhhhhhccccceEEEEeeccccccceeeeccCccccceeccCCC
Confidence 999999998654 4556666788999999998777655543 679999999876 56778889999999999965 4
Q ss_pred CCEEEEEe-CCeEEEEEcCCC
Q 003236 736 GEYLASVS-DELVRVWSIGSG 755 (837)
Q Consensus 736 g~~Lasgs-Dg~I~IwDl~s~ 755 (837)
...+.+++ |+.|..-.+++.
T Consensus 322 ~~~l~s~sKD~tv~qh~~kna 342 (839)
T KOG0269|consen 322 RINLWSCSKDGTVLQHLFKNA 342 (839)
T ss_pred ceeeEeecCccHHHHhhhhcc
Confidence 55677777 887766655544
|
|
| >KOG0302 consensus Ribosome Assembly protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.85 E-value=7.7e-20 Score=190.95 Aligned_cols=239 Identities=18% Similarity=0.359 Sum_probs=187.5
Q ss_pred cCCCCCeEEEEEcCCC--CEEEEEECCCcEEEEeCC----------------CCeEEEEeccCCCCeEEEEEcCC-CCEE
Q 003236 552 PASTSKVESCHFSPDG--KLLATGGHDKKAVLWCTE----------------SFTVKSTLEEHTQWITDVRFSPS-LSRL 612 (837)
Q Consensus 552 ~~H~~~V~sl~fSpdg--~~Lasgs~Dg~I~VWd~~----------------t~~~~~~l~~h~~~I~~l~fspd-g~~L 612 (837)
..|.+.|..+.-++-+ .+.|+-+..|.|.||++. ..+++.++.+|...=+.|+|+|- ...|
T Consensus 148 i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~L 227 (440)
T KOG0302|consen 148 IPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGRL 227 (440)
T ss_pred cccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeeccccccccc
Confidence 3677778888777744 466777888999999864 24567888899999999999993 3358
Q ss_pred EEEeCCCeEEEEEcCCCCcee--EEeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCC---eeeeEEecCCCeeE
Q 003236 613 ATSSADRTVRVWDTENPDYSL--RTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNG---SCAGVFKCQSGATQ 687 (837)
Q Consensus 613 atgs~Dg~I~IWDl~~~~~~~--~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~---~~i~~~~~~~~i~s 687 (837)
++|..-+.|++|...++...+ ..+.+|+..|..|+|+|..+.+|++|+.||+|+|||++.+ .++.+..+.+.|+.
T Consensus 228 lsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~kAh~sDVNV 307 (440)
T KOG0302|consen 228 LSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVSTKAHNSDVNV 307 (440)
T ss_pred ccCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEeeccCCceee
Confidence 888888999999999876544 5677899999999999999999999999999999999988 56666667889999
Q ss_pred EEEecCCCEEEEEEcCCeEEEEECCC---CeEEEEEcCCCCCEEEEEEcCCC-CEEEEEe-CCeEEEEEcCCCCCce---
Q 003236 688 MRFQPRLGRILAAAIENYISILDVET---QVCRLKLQGHKNQVHSVCWNTSG-EYLASVS-DELVRVWSIGSGSKGE--- 759 (837)
Q Consensus 688 l~~sp~g~~llags~dg~I~iwDl~s---~~~~~~l~~h~~~V~sl~~spdg-~~Lasgs-Dg~I~IwDl~s~~~~~--- 759 (837)
|.|+.+...|++|+.||+++|||++. +.++..|+-|..+|++|.|+|.. ..|++++ |..|.|||+......+
T Consensus 308 ISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsvE~D~ee~~ 387 (440)
T KOG0302|consen 308 ISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLSVEADEEEID 387 (440)
T ss_pred EEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEeccCCCcEEEEEeeccCChhhhc
Confidence 99999988899999999999999985 57889999999999999999954 3444444 9999999997532200
Q ss_pred ------------eEEEeecCCCceEEEEEeCCCC-EEEEEEcCC
Q 003236 760 ------------CIHELSCTGNKFHSCVFHPTFP-SLLVIGCYE 790 (837)
Q Consensus 760 ------------~i~~~~~~~~~I~sv~fspdg~-~L~sgs~dg 790 (837)
.+..+.-....+..+.|++.-+ +|++.+.||
T Consensus 388 ~~a~~~L~dlPpQLLFVHqGQke~KevhWH~QiPG~lvsTa~dG 431 (440)
T KOG0302|consen 388 QEAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQIPGLLVSTAIDG 431 (440)
T ss_pred cccccchhcCCceeEEEecchhHhhhheeccCCCCeEEEecccc
Confidence 0111111234567788888754 455555565
|
|
| >KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.7e-19 Score=185.12 Aligned_cols=267 Identities=18% Similarity=0.294 Sum_probs=207.1
Q ss_pred eEEEEEcCCCCEEEEEECCCcEEEEeCCCC------------eEEEEec-cCCCCeEEEEEc-------CCCCEEEEEeC
Q 003236 558 VESCHFSPDGKLLATGGHDKKAVLWCTESF------------TVKSTLE-EHTQWITDVRFS-------PSLSRLATSSA 617 (837)
Q Consensus 558 V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~------------~~~~~l~-~h~~~I~~l~fs-------pdg~~Latgs~ 617 (837)
...+.|+|||..|++-+.|..+.+|++... +...+++ .....|...+|- |+..++++.+.
T Consensus 52 ~kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ssr 131 (406)
T KOG2919|consen 52 LKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVSSR 131 (406)
T ss_pred hccceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeeccc
Confidence 456899999999999999999999986421 0111111 234568888886 56789999999
Q ss_pred CCeEEEEEcCCCCceeEEeec--ccc---ceEEEEEcCCCCeEEEEEeCCCcEEEEEC-CCCeeeeEEe---c-----CC
Q 003236 618 DRTVRVWDTENPDYSLRTFTG--HST---TVMSLDFHPSKEDLLCSCDNNSEIRYWSI-NNGSCAGVFK---C-----QS 683 (837)
Q Consensus 618 Dg~I~IWDl~~~~~~~~~~~~--h~~---~V~sl~fspdg~~llasgs~Dg~I~vwDl-~t~~~i~~~~---~-----~~ 683 (837)
|.-|++||.-+++. ...+.+ |-. ...+++|+|||..++ ++....|++||+ +.|.....+. . .+
T Consensus 132 ~~PIh~wdaftG~l-raSy~~ydh~de~taAhsL~Fs~DGeqlf--aGykrcirvFdt~RpGr~c~vy~t~~~~k~gq~g 208 (406)
T KOG2919|consen 132 DQPIHLWDAFTGKL-RASYRAYDHQDEYTAAHSLQFSPDGEQLF--AGYKRCIRVFDTSRPGRDCPVYTTVTKGKFGQKG 208 (406)
T ss_pred cCceeeeecccccc-ccchhhhhhHHhhhhheeEEecCCCCeEe--ecccceEEEeeccCCCCCCcchhhhhcccccccc
Confidence 99999999998874 333322 333 356899999999776 455789999999 5554322221 1 34
Q ss_pred CeeEEEEecCCC-EEEEEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEe--CCeEEEEEcCCCCCcee
Q 003236 684 GATQMRFQPRLG-RILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS--DELVRVWSIGSGSKGEC 760 (837)
Q Consensus 684 ~i~sl~~sp~g~-~llags~dg~I~iwDl~s~~~~~~l~~h~~~V~sl~~spdg~~Lasgs--Dg~I~IwDl~s~~~~~~ 760 (837)
-+.|++|+|... .+++++....+-||.-....++..+.+|.+.|+.++|.++|+.|++|. |..|.+||++... ..
T Consensus 209 iisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~--~p 286 (406)
T KOG2919|consen 209 IISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSR--DP 286 (406)
T ss_pred eeeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeehhcc--ch
Confidence 578999999654 788888889999999999999999999999999999999999999998 8899999998753 44
Q ss_pred EEEeecCCC---ceEEEEEeCCCCEEEEEEcCCeEEEEECCC-CcEE-EeccCCCCeeEEEEeCCCCEEEEEEC
Q 003236 761 IHELSCTGN---KFHSCVFHPTFPSLLVIGCYETLELWNMTE-NKTL-TLSAHDKLVSSLAASTVNGMVASASH 829 (837)
Q Consensus 761 i~~~~~~~~---~I~sv~fspdg~~L~sgs~dg~I~IwDl~s-~~~~-~l~~h~~~V~sla~spdg~~LaSgs~ 829 (837)
+..+..|.. .-.-+...|++.+|++|+.+|.|++||+++ +..+ .+..|...|+.++++|--.++|+++.
T Consensus 287 v~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~~~~sd~vNgvslnP~mpilatssG 360 (406)
T KOG2919|consen 287 VYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNEVSVTGNYSDTVNGVSLNPIMPILATSSG 360 (406)
T ss_pred hhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCCCcccccccccccccceecCcccceeeeccC
Confidence 445544433 333456678999999999999999999988 5534 67789999999999999888888764
|
|
| >KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown] | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.1e-19 Score=200.45 Aligned_cols=282 Identities=15% Similarity=0.213 Sum_probs=208.0
Q ss_pred ccCCCeEEcccCCCceEEeecCCCCCCCCccccccccCCCeeeeEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEE
Q 003236 503 TDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLW 582 (837)
Q Consensus 503 ~~~~~~v~~Gs~D~~v~~w~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~H~~~V~sl~fSpdg~~Lasgs~Dg~I~VW 582 (837)
...+.+++.+..|+.|.+|....-.. . ..-..+....+|.+.|..+.|-|....|++++.|.++++|
T Consensus 61 ~n~eHiLavadE~G~i~l~dt~~~~f---------r----~ee~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~W 127 (720)
T KOG0321|consen 61 PNKEHILAVADEDGGIILFDTKSIVF---------R----LEERQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPW 127 (720)
T ss_pred CCccceEEEecCCCceeeecchhhhc---------c----hhhhhhcccccccceeEeeccCCCceeEEEccCCceeeee
Confidence 34567889999999999985432210 0 0011234566899999999999966689999999999999
Q ss_pred eCCCCeEEEE--eccCCCCeEEEEEcCC-CCEEEEEeCCCeEEEEEcCCCCc--------------------------ee
Q 003236 583 CTESFTVKST--LEEHTQWITDVRFSPS-LSRLATSSADRTVRVWDTENPDY--------------------------SL 633 (837)
Q Consensus 583 d~~t~~~~~~--l~~h~~~I~~l~fspd-g~~Latgs~Dg~I~IWDl~~~~~--------------------------~~ 633 (837)
|++..+++.. +.+|...|.++||.+. ...|++|+.||.|.|||+..... .+
T Consensus 128 dvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~ 207 (720)
T KOG0321|consen 128 DVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRI 207 (720)
T ss_pred eeccceeecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccc
Confidence 9999888866 8899999999999995 56789999999999999874320 01
Q ss_pred EEeeccccceEE---EEEcCCCCeEEEEEeC-CCcEEEEECCCCeeeeEEe------c------CCCeeEEEEecCCCEE
Q 003236 634 RTFTGHSTTVMS---LDFHPSKEDLLCSCDN-NSEIRYWSINNGSCAGVFK------C------QSGATQMRFQPRLGRI 697 (837)
Q Consensus 634 ~~~~~h~~~V~s---l~fspdg~~llasgs~-Dg~I~vwDl~t~~~i~~~~------~------~~~i~sl~~sp~g~~l 697 (837)
.....+...|.+ +.+..|.. .|++++. |+.|+|||+++..+..... . ..++.++.....|.++
T Consensus 208 ~k~kA~s~ti~ssvTvv~fkDe~-tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L 286 (720)
T KOG0321|consen 208 RKWKAASNTIFSSVTVVLFKDES-TLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYL 286 (720)
T ss_pred cccccccCceeeeeEEEEEeccc-eeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeE
Confidence 122234444544 44555645 4556555 9999999999765443221 1 2357788888889999
Q ss_pred EEEEcCCeEEEEECCCC--eEEEEEcCCCCC--EEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceE
Q 003236 698 LAAAIENYISILDVETQ--VCRLKLQGHKNQ--VHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFH 772 (837)
Q Consensus 698 lags~dg~I~iwDl~s~--~~~~~l~~h~~~--V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~ 772 (837)
++.|.|+.|++|++.+. .++..+.++... ...-..+||+.+|++|+ |...++|.+.+.. .....+.+|...|+
T Consensus 287 ~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e--~~~~~l~Ght~eVt 364 (720)
T KOG0321|consen 287 FASCTDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPE--APPALLLGHTREVT 364 (720)
T ss_pred EEEecCCcEEEEeccccCcCchhhccCcccceeeeeeecCCCCceEeccCCCcceeeeeecCcc--CChhhhhCcceEEE
Confidence 99999999999999864 445555544321 12235689999999999 9999999998764 45556778899999
Q ss_pred EEEEeCCC-CEEEEEEcCCeEEEEECCCC
Q 003236 773 SCVFHPTF-PSLLVIGCYETLELWNMTEN 800 (837)
Q Consensus 773 sv~fspdg-~~L~sgs~dg~I~IwDl~s~ 800 (837)
+++|.|.. .-+++++.|..++||++..+
T Consensus 365 ~V~w~pS~~t~v~TcSdD~~~kiW~l~~~ 393 (720)
T KOG0321|consen 365 TVRWLPSATTPVATCSDDFRVKIWRLSNG 393 (720)
T ss_pred EEeeccccCCCceeeccCcceEEEeccCc
Confidence 99998753 33777788899999998654
|
|
| >COG2319 FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.84 E-value=2.8e-17 Score=181.46 Aligned_cols=313 Identities=27% Similarity=0.431 Sum_probs=236.7
Q ss_pred cccCCCeEEcccCCCceEEeecCCCCCCCCccccccccCCCeeeeEEEEecCCC-CCeEEEEE-cCCCC-EEEEEEC-CC
Q 003236 502 LTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPAST-SKVESCHF-SPDGK-LLATGGH-DK 577 (837)
Q Consensus 502 l~~~~~~v~~Gs~D~~v~~w~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~H~-~~V~sl~f-Spdg~-~Lasgs~-Dg 577 (837)
+......+..++.|+.+.+|...... ..+..+..+. ..+..+.+ ++++. +++..+. |+
T Consensus 73 ~~~~~~~~~~~~~d~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 134 (466)
T COG2319 73 FSPDGELLLSGSSDGTIKLWDLDNGE------------------KLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDG 134 (466)
T ss_pred ECCCCcEEEEecCCCcEEEEEcCCCc------------------eeEEEEeccCCCceeeEEEECCCcceEEeccCCCCc
Confidence 34455677777788889998665442 2234444433 36777777 88887 5555444 99
Q ss_pred cEEEEeCCC-CeEEEEeccCCCCeEEEEEcCCCCEEEEEeC-CCeEEEEEcCCCCceeEEeeccccceEEEEEcCCCCeE
Q 003236 578 KAVLWCTES-FTVKSTLEEHTQWITDVRFSPSLSRLATSSA-DRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDL 655 (837)
Q Consensus 578 ~I~VWd~~t-~~~~~~l~~h~~~I~~l~fspdg~~Latgs~-Dg~I~IWDl~~~~~~~~~~~~h~~~V~sl~fspdg~~l 655 (837)
.+.+|+... ......+..|...|.+++|+|++.++++++. |+.+++|++.... .+..+.+|...|.+++|+|++..+
T Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~ 213 (466)
T COG2319 135 TVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGK-PLSTLAGHTDPVSSLAFSPDGGLL 213 (466)
T ss_pred cEEEEEecCCCeEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCc-eEEeeccCCCceEEEEEcCCcceE
Confidence 999999998 8888889999999999999999998998886 9999999999744 477788899999999999988756
Q ss_pred EEEEeCCCcEEEEECCCCeeee-EEecCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeE-EEEEcCCCCCEEEEEEc
Q 003236 656 LCSCDNNSEIRYWSINNGSCAG-VFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVC-RLKLQGHKNQVHSVCWN 733 (837)
Q Consensus 656 lasgs~Dg~I~vwDl~t~~~i~-~~~~~~~i~sl~~sp~g~~llags~dg~I~iwDl~s~~~-~~~l~~h~~~V~sl~~s 733 (837)
+++++.|+.|++||...+..+. .+..+.......|++++..+++++.++.+++||++.... +..+..|...|.++.|+
T Consensus 214 ~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 293 (466)
T COG2319 214 IASGSSDGTIRLWDLSTGKLLRSTLSGHSDSVVSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFS 293 (466)
T ss_pred EEEecCCCcEEEEECCCCcEEeeecCCCCcceeEeECCCCCEEEEecCCCcEEEeeecCCCcEEEEEecCCccEEEEEEC
Confidence 6666899999999999777777 454433332227999988888999999999999987654 44446788999999999
Q ss_pred CCCCEEEEEe-CCeEEEEEcCCCCCceeEEEe--ecCCCceEEEEEeCCCCEEEEE-EcCCeEEEEECCCCcEEEeccCC
Q 003236 734 TSGEYLASVS-DELVRVWSIGSGSKGECIHEL--SCTGNKFHSCVFHPTFPSLLVI-GCYETLELWNMTENKTLTLSAHD 809 (837)
Q Consensus 734 pdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~--~~~~~~I~sv~fspdg~~L~sg-s~dg~I~IwDl~s~~~~~l~~h~ 809 (837)
|++..+++++ |+.+++||+.+.. ..... ..|...+..+.|.+++..++.+ ..|+.+.+|++............
T Consensus 294 ~~~~~~~~~~~d~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~ 370 (466)
T COG2319 294 PDGKLLASGSSDGTVRLWDLETGK---LLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEGH 370 (466)
T ss_pred CCCCEEEEeeCCCcEEEEEcCCCc---eEEEeeecccCCceEEEEECCCCCEEEEeecCCCcEEeeecCCCceeEEecCC
Confidence 9888888877 8889999888763 33333 3666678888884332556666 57788999999888733332333
Q ss_pred CCeeEEEEeCCCCEEEE-EECCCcEEEeC
Q 003236 810 KLVSSLAASTVNGMVAS-ASHDKCVKIWK 837 (837)
Q Consensus 810 ~~V~sla~spdg~~LaS-gs~DG~I~IWd 837 (837)
..+..+.+.+ ...++. +..++.+.+|+
T Consensus 371 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 398 (466)
T COG2319 371 SNVLSVSFSP-DGRVVSSGSTDGTVRLWD 398 (466)
T ss_pred ceEEEEEECC-CCCEEEEecCCCceEEEe
Confidence 3388999988 544444 68899999996
|
|
| >KOG2048 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.84 E-value=2.1e-18 Score=191.95 Aligned_cols=272 Identities=14% Similarity=0.178 Sum_probs=219.4
Q ss_pred CCCeEEcccCCCceEEeecCCCCCCCCccccccccCCCeeeeEEEEecCC-CCCeEEEEEcCCCCEEEEEECCCcEEEEe
Q 003236 505 MDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPAS-TSKVESCHFSPDGKLLATGGHDKKAVLWC 583 (837)
Q Consensus 505 ~~~~v~~Gs~D~~v~~w~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~H-~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd 583 (837)
.++.+|.+-.|++|++|..... +-...++.++ .+.|.+++|++. ..|++.+.+|.|.-||
T Consensus 36 kS~~lAvsRt~g~IEiwN~~~~------------------w~~~~vi~g~~drsIE~L~W~e~-~RLFS~g~sg~i~EwD 96 (691)
T KOG2048|consen 36 KSNQLAVSRTDGNIEIWNLSNN------------------WFLEPVIHGPEDRSIESLAWAEG-GRLFSSGLSGSITEWD 96 (691)
T ss_pred cCCceeeeccCCcEEEEccCCC------------------ceeeEEEecCCCCceeeEEEccC-CeEEeecCCceEEEEe
Confidence 3456899999999999965442 1223445544 567999999954 4677788899999999
Q ss_pred CCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCcee-EEeeccccceEEEEEcCCCCeEEEEEeCC
Q 003236 584 TESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSL-RTFTGHSTTVMSLDFHPSKEDLLCSCDNN 662 (837)
Q Consensus 584 ~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~~~~~~-~~~~~h~~~V~sl~fspdg~~llasgs~D 662 (837)
+.+++.+..+....+.|++++.+|.+..++.|++||.+..++...+.... +.+...++.|.+++|+|++.. +++|+.|
T Consensus 97 l~~lk~~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~-i~~Gs~D 175 (691)
T KOG2048|consen 97 LHTLKQKYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTK-IAGGSID 175 (691)
T ss_pred cccCceeEEecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccE-EEecccC
Confidence 99999999999999999999999999999999999988888887765433 334445689999999999764 5589999
Q ss_pred CcEEEEECCCCeeeeEEec-----CC----CeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEc
Q 003236 663 SEIRYWSINNGSCAGVFKC-----QS----GATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWN 733 (837)
Q Consensus 663 g~I~vwDl~t~~~i~~~~~-----~~----~i~sl~~sp~g~~llags~dg~I~iwDl~s~~~~~~l~~h~~~V~sl~~s 733 (837)
|.|++||..++..+..... .. -|.++.|. ..+.|++|...|.|.+||...+..+..+..|...|.|++..
T Consensus 176 g~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~L-rd~tI~sgDS~G~V~FWd~~~gTLiqS~~~h~adVl~Lav~ 254 (691)
T KOG2048|consen 176 GVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFL-RDSTIASGDSAGTVTFWDSIFGTLIQSHSCHDADVLALAVA 254 (691)
T ss_pred ceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEe-ecCcEEEecCCceEEEEcccCcchhhhhhhhhcceeEEEEc
Confidence 9999999999887773321 22 14566666 44789999999999999999999999999999999999999
Q ss_pred CCCCEEEEEe-CCeEEEEEcCCCCC-ceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCC
Q 003236 734 TSGEYLASVS-DELVRVWSIGSGSK-GECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTE 799 (837)
Q Consensus 734 pdg~~Lasgs-Dg~I~IwDl~s~~~-~~~i~~~~~~~~~I~sv~fspdg~~L~sgs~dg~I~IwDl~s 799 (837)
+++.++++++ |+.|.-|...+... .........|...+.+++..++ .|++|+.|..+.+-....
T Consensus 255 ~~~d~vfsaGvd~~ii~~~~~~~~~~wv~~~~r~~h~hdvrs~av~~~--~l~sgG~d~~l~i~~s~~ 320 (691)
T KOG2048|consen 255 DNEDRVFSAGVDPKIIQYSLTTNKSEWVINSRRDLHAHDVRSMAVIEN--ALISGGRDFTLAICSSRE 320 (691)
T ss_pred CCCCeEEEccCCCceEEEEecCCccceeeeccccCCcccceeeeeecc--eEEecceeeEEEEccccc
Confidence 9999999888 99988888776543 2233445678889999999888 799999999888876554
|
|
| >KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.1e-19 Score=194.68 Aligned_cols=258 Identities=18% Similarity=0.235 Sum_probs=200.5
Q ss_pred eEEEEEcCCCCE-EEEEECCCcEEEEeCCC--CeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeE
Q 003236 558 VESCHFSPDGKL-LATGGHDKKAVLWCTES--FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLR 634 (837)
Q Consensus 558 V~sl~fSpdg~~-Lasgs~Dg~I~VWd~~t--~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~~~~~~~ 634 (837)
|.+++|+....+ +++.+.|..|++|.-.. ++....-....+.-.|++......|+++|+..+.|+|||+.. +.+.+
T Consensus 37 ~~s~~w~~~n~lvvas~~gdk~~~~~~K~g~~~~Vp~~~k~~gd~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~-kl~hr 115 (673)
T KOG4378|consen 37 DFSFNWQRRNFLVVASMAGDKVMRIKEKDGKTPEVPRVRKLTGDNAFCVACASQSLYEISGGQSGCVKIWDLRA-KLIHR 115 (673)
T ss_pred ceeeeccccceEEEeecCCceeEEEecccCCCCccceeeccccchHHHHhhhhcceeeeccCcCceeeehhhHH-HHHhh
Confidence 899999976642 33445788999996332 222211111222334454444558999999999999999994 66688
Q ss_pred EeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeeEEecCC--CeeEEEEecCCCEEE-EEEcCCeEEEEEC
Q 003236 635 TFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQS--GATQMRFQPRLGRIL-AAAIENYISILDV 711 (837)
Q Consensus 635 ~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~~~--~i~sl~~sp~g~~ll-ags~dg~I~iwDl 711 (837)
.+.+|...|+++.++..+ .+|++++..|.|.|..+.++.....|.++. .+.-+.|++..++++ +++.+|.|.+||+
T Consensus 116 ~lkdh~stvt~v~YN~~D-eyiAsvs~gGdiiih~~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv 194 (673)
T KOG4378|consen 116 FLKDHQSTVTYVDYNNTD-EYIASVSDGGDIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDV 194 (673)
T ss_pred hccCCcceeEEEEecCCc-ceeEEeccCCcEEEEecccCccccceecCCCCeEEEeecccccceeeEeeccCCeEEEEec
Confidence 999999999999999774 477799999999999999998888888753 366899999877755 5667799999999
Q ss_pred CCCeEEEEE-cCCCCCEEEEEEcCCCC-EEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEc
Q 003236 712 ETQVCRLKL-QGHKNQVHSVCWNTSGE-YLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGC 788 (837)
Q Consensus 712 ~s~~~~~~l-~~h~~~V~sl~~spdg~-~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fspdg~~L~sgs~ 788 (837)
....+++.+ ..|..+...|||+|... +|++.+ |..|.+||++......++. -..+...++|.++|.+|++|..
T Consensus 195 ~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~----y~~Plstvaf~~~G~~L~aG~s 270 (673)
T KOG4378|consen 195 QGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRLT----YSHPLSTVAFSECGTYLCAGNS 270 (673)
T ss_pred cCCCcccchhhhccCCcCcceecCCccceEEEecccceEEEeecccccccceee----ecCCcceeeecCCceEEEeecC
Confidence 988777655 45999999999999765 555556 9999999999764333332 3678899999999999999999
Q ss_pred CCeEEEEECCCCcE-E-EeccCCCCeeEEEEeCCC
Q 003236 789 YETLELWNMTENKT-L-TLSAHDKLVSSLAASTVN 821 (837)
Q Consensus 789 dg~I~IwDl~s~~~-~-~l~~h~~~V~sla~spdg 821 (837)
.|.|..||++..+. + .+.+|...|++|+|-+..
T Consensus 271 ~G~~i~YD~R~~k~Pv~v~sah~~sVt~vafq~s~ 305 (673)
T KOG4378|consen 271 KGELIAYDMRSTKAPVAVRSAHDASVTRVAFQPSP 305 (673)
T ss_pred CceEEEEecccCCCCceEeeecccceeEEEeeecc
Confidence 99999999987653 3 677999999999998764
|
|
| >COG2319 FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.83 E-value=4.1e-17 Score=180.15 Aligned_cols=284 Identities=29% Similarity=0.466 Sum_probs=227.5
Q ss_pred eEEEEecCCCCCeEEEEEcCCCCEEEEEEC-CCcEEEEeCCCCeEEEEeccCCCCeEEEEEcCCCC-EEEEEeCCCeEEE
Q 003236 546 TEFQLIPASTSKVESCHFSPDGKLLATGGH-DKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLS-RLATSSADRTVRV 623 (837)
Q Consensus 546 ~~~~~l~~H~~~V~sl~fSpdg~~Lasgs~-Dg~I~VWd~~t~~~~~~l~~h~~~I~~l~fspdg~-~Latgs~Dg~I~I 623 (837)
.....+..|...|.+++|+|++.++++++. |+.+++|++..+..+..+..|...|.+++|+|++. .+++++.|+.|++
T Consensus 146 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~ 225 (466)
T COG2319 146 KLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRL 225 (466)
T ss_pred eEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEeeccCCCceEEEEEcCCcceEEEEecCCCcEEE
Confidence 456778899999999999999999988886 99999999999889999999999999999999988 5555599999999
Q ss_pred EEcCCCCceeE-EeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCee-eeEE-ecCCCeeEEEEecCCCEEEEE
Q 003236 624 WDTENPDYSLR-TFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSC-AGVF-KCQSGATQMRFQPRLGRILAA 700 (837)
Q Consensus 624 WDl~~~~~~~~-~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~-i~~~-~~~~~i~sl~~sp~g~~llag 700 (837)
||...+.. +. .+.+|...+ ...|++++ .++++++.|+.+++|++..... +..+ .+...+.++.|.|++..++++
T Consensus 226 wd~~~~~~-~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 302 (466)
T COG2319 226 WDLSTGKL-LRSTLSGHSDSV-VSSFSPDG-SLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASG 302 (466)
T ss_pred EECCCCcE-EeeecCCCCcce-eEeECCCC-CEEEEecCCCcEEEeeecCCCcEEEEEecCCccEEEEEECCCCCEEEEe
Confidence 98885443 44 688888775 44899998 4666899999999999987664 3333 335779999999988888888
Q ss_pred EcCCeEEEEECCCCeEEEEEc--CCCCCEEEEEEcCCCCEEEEE-e-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEE
Q 003236 701 AIENYISILDVETQVCRLKLQ--GHKNQVHSVCWNTSGEYLASV-S-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVF 776 (837)
Q Consensus 701 s~dg~I~iwDl~s~~~~~~l~--~h~~~V~sl~~spdg~~Lasg-s-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~f 776 (837)
+.|+.+.+||........... .|...+..+.|.+++..++.+ . |+.+.+|++.... ....... ...+..+.+
T Consensus 303 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~---~~~~~~~-~~~~~~~~~ 378 (466)
T COG2319 303 SSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGK---PLKTLEG-HSNVLSVSF 378 (466)
T ss_pred eCCCcEEEEEcCCCceEEEeeecccCCceEEEEECCCCCEEEEeecCCCcEEeeecCCCc---eeEEecC-CceEEEEEE
Confidence 888889999999887666665 788889999994333566655 4 8889999998763 2222222 222888888
Q ss_pred eCCCCEEEE-EEcCCeEEEEECCCCcEEEeccCC-CCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 003236 777 HPTFPSLLV-IGCYETLELWNMTENKTLTLSAHD-KLVSSLAASTVNGMVASASHDKCVKIWK 837 (837)
Q Consensus 777 spdg~~L~s-gs~dg~I~IwDl~s~~~~~l~~h~-~~V~sla~spdg~~LaSgs~DG~I~IWd 837 (837)
.+ ...++. +..++.+.+|+............. ..+..+.+++++.++++++.++.+++|+
T Consensus 379 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 440 (466)
T COG2319 379 SP-DGRVVSSGSTDGTVRLWDLSTGSLLRNLDGHTSRVTSLDFSPDGKSLASGSSDNTIRLWD 440 (466)
T ss_pred CC-CCCEEEEecCCCceEEEecccCeeeeeccCCCCcEEEEEECCCCcEEEEecCCCcEEEEe
Confidence 88 533443 577889999999998887555444 8899999999999999999999999996
|
|
| >KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.83 E-value=6e-19 Score=186.12 Aligned_cols=296 Identities=19% Similarity=0.273 Sum_probs=208.9
Q ss_pred eEEcccCCCceEEeecCCCCCCCCccccccccCCCeeeeEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCC--
Q 003236 508 FVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTE-- 585 (837)
Q Consensus 508 ~v~~Gs~D~~v~~w~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~H~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~-- 585 (837)
++++|+.|..|++|......... .+..+.....|..|...|++|.|+|+|++||+|+.+|.|.+|-..
T Consensus 28 ~laT~G~D~~iriW~v~r~~~~~----------~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lWk~~~~ 97 (434)
T KOG1009|consen 28 KLATAGGDKDIRIWKVNRSEPGG----------GDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLWKQGDV 97 (434)
T ss_pred ceecccCccceeeeeeeecCCCC----------CceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEEEecCc
Confidence 88999999999999665543321 114566678899999999999999999999999999999999644
Q ss_pred ------C--------CeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeEEeeccccceEEEEEcCC
Q 003236 586 ------S--------FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPS 651 (837)
Q Consensus 586 ------t--------~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~sl~fspd 651 (837)
+ ....+++.+|...|+.++|+|++.++++++.|..+++||+..+.. ...+..|...|..++|.|-
T Consensus 98 ~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l-~~~~~dh~~yvqgvawDpl 176 (434)
T KOG1009|consen 98 RIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQL-LAILDDHEHYVQGVAWDPL 176 (434)
T ss_pred CCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEecccee-Eeeccccccccceeecchh
Confidence 2 345577889999999999999999999999999999999998764 8888999999999999998
Q ss_pred CCeEEEEEeCCCcEEEEECCCCeeeeEEecCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEE
Q 003236 652 KEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVC 731 (837)
Q Consensus 652 g~~llasgs~Dg~I~vwDl~t~~~i~~~~~~~~i~sl~~sp~g~~llags~dg~I~iwDl~s~~~~~~l~~h~~~V~sl~ 731 (837)
+. ++++-+.|...+.+++.....+..... .....-.+.+. .....++|.-++. ..-...++
T Consensus 177 ~q-yv~s~s~dr~~~~~~~~~~~~~~~~~~-~~m~~~~~~~~--------e~~s~rLfhDeTl---------ksFFrRls 237 (434)
T KOG1009|consen 177 NQ-YVASKSSDRHPEGFSAKLKQVIKRHGL-DIMPAKAFNER--------EGKSTRLFHDETL---------KSFFRRLS 237 (434)
T ss_pred hh-hhhhhccCcccceeeeeeeeeeeeeee-eEeeecccCCC--------CcceeeeeecCch---------hhhhhhcc
Confidence 66 555777777677776654443333221 00000000000 1112333322222 12345678
Q ss_pred EcCCCCEEEEEe-----CC-----eEEEEEcCCCCCceeEEEeecCCCceEEEEEeC-----------------CCCEEE
Q 003236 732 WNTSGEYLASVS-----DE-----LVRVWSIGSGSKGECIHELSCTGNKFHSCVFHP-----------------TFPSLL 784 (837)
Q Consensus 732 ~spdg~~Lasgs-----Dg-----~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fsp-----------------dg~~L~ 784 (837)
|+|+|.+|++.. ++ ..++|+-...+ .++..+.+.......+.|+| -.+.++
T Consensus 238 fTPdG~llvtPag~~~~g~~~~~n~tYvfsrk~l~--rP~~~lp~~~k~~lavr~~pVy~elrp~~~~~~~~~lpyrlvf 315 (434)
T KOG1009|consen 238 FTPDGSLLVTPAGLFKVGGGVFRNTSYVFSRKDLK--RPAARLPSPKKPALAVRFSPVYYELRPLSSEKFLFVLPYRLVF 315 (434)
T ss_pred cCCCCcEEEcccceeeeCCceeeceeEeecccccc--CceeecCCCCcceEEEEeeeeEEEeccccccccccccccceEE
Confidence 889998887643 23 23555543222 34444444444444444443 123466
Q ss_pred EEEcCCeEEEEECCCCcEE--EeccCCCCeeEEEEeCCCCEEEEEECCCcEEE
Q 003236 785 VIGCYETLELWNMTENKTL--TLSAHDKLVSSLAASTVNGMVASASHDKCVKI 835 (837)
Q Consensus 785 sgs~dg~I~IwDl~s~~~~--~l~~h~~~V~sla~spdg~~LaSgs~DG~I~I 835 (837)
+....+.|+|||.....++ .-.-|-..|+.++|++||.+|+..+.||.+.+
T Consensus 316 aiAt~~svyvydtq~~~P~~~v~nihy~~iTDiaws~dg~~l~vSS~DGyCS~ 368 (434)
T KOG1009|consen 316 AIATKNSVYVYDTQTLEPLAVVDNIHYSAITDIAWSDDGSVLLVSSTDGFCSL 368 (434)
T ss_pred EEeecceEEEeccccccceEEEeeeeeeeecceeecCCCcEEEEeccCCceEE
Confidence 6667778999999998777 33468899999999999999999999997653
|
|
| >KOG0270 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.9e-19 Score=191.75 Aligned_cols=236 Identities=19% Similarity=0.363 Sum_probs=186.4
Q ss_pred CCCEEEEEECCCcEEEEeCCCCe---EEEE------------------eccCCCCeEEEEEcCC-CCEEEEEeCCCeEEE
Q 003236 566 DGKLLATGGHDKKAVLWCTESFT---VKST------------------LEEHTQWITDVRFSPS-LSRLATSSADRTVRV 623 (837)
Q Consensus 566 dg~~Lasgs~Dg~I~VWd~~t~~---~~~~------------------l~~h~~~I~~l~fspd-g~~Latgs~Dg~I~I 623 (837)
-|+|+|.|+.|..|.|||+.-.. +..+ -.+|++.|.++.|+.+ ...||+||.|.+|++
T Consensus 191 ~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~l 270 (463)
T KOG0270|consen 191 AGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKL 270 (463)
T ss_pred CcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEE
Confidence 36799999999999999975211 1111 2369999999999875 568999999999999
Q ss_pred EEcCCCCceeEEeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCC-CeeeeEEecCCCeeEEEEecCCC-EEEEEE
Q 003236 624 WDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN-GSCAGVFKCQSGATQMRFQPRLG-RILAAA 701 (837)
Q Consensus 624 WDl~~~~~~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t-~~~i~~~~~~~~i~sl~~sp~g~-~llags 701 (837)
||+.+++. ..++..|...|.++.|+|....++++|+.|++|.+.|.+. ...-..++..+.|..++|.+... .++++.
T Consensus 271 WD~~~g~p-~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~g~VEkv~w~~~se~~f~~~t 349 (463)
T KOG0270|consen 271 WDVDTGKP-KSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWKFDGEVEKVAWDPHSENSFFVST 349 (463)
T ss_pred EEcCCCCc-ceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEEeccceEEEEecCCCceeEEEec
Confidence 99999774 7788889999999999999999999999999999999994 34445666778999999999655 466777
Q ss_pred cCCeEEEEECCCC-eEEEEEcCCCCCEEEEEEcCCC-CEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeC
Q 003236 702 IENYISILDVETQ-VCRLKLQGHKNQVHSVCWNTSG-EYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHP 778 (837)
Q Consensus 702 ~dg~I~iwDl~s~-~~~~~l~~h~~~V~sl~~spdg-~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fsp 778 (837)
.||.|+-+|+|.. +++.++..|...|.+|++++.- .++++++ |+.|++|++..... ..+......-+...|.++.|
T Consensus 350 ddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~-~~v~~~~~~~~rl~c~~~~~ 428 (463)
T KOG0270|consen 350 DDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSP-KSVKEHSFKLGRLHCFALDP 428 (463)
T ss_pred CCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeeccccceEEEEeecCCCC-cccccccccccceeecccCC
Confidence 8899999999986 9999999999999999998864 4566666 99999999976532 22222222234467778888
Q ss_pred CCCEE-EEEEcCCeEEEEECCCCcEE
Q 003236 779 TFPSL-LVIGCYETLELWNMTENKTL 803 (837)
Q Consensus 779 dg~~L-~sgs~dg~I~IwDl~s~~~~ 803 (837)
+-.++ ++|+..+.++|||+.+...+
T Consensus 429 ~~a~~la~GG~k~~~~vwd~~~~~~V 454 (463)
T KOG0270|consen 429 DVAFTLAFGGEKAVLRVWDIFTNSPV 454 (463)
T ss_pred CcceEEEecCccceEEEeecccChhH
Confidence 77654 45555667999999877654
|
|
| >KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.83 E-value=3.2e-20 Score=217.06 Aligned_cols=243 Identities=19% Similarity=0.349 Sum_probs=202.2
Q ss_pred CCeEEEEEcCCCCE----EEEEECCCcEEEEeCCCC------eEEEEeccCCCCeEEEEEcCC-CCEEEEEeCCCeEEEE
Q 003236 556 SKVESCHFSPDGKL----LATGGHDKKAVLWCTESF------TVKSTLEEHTQWITDVRFSPS-LSRLATSSADRTVRVW 624 (837)
Q Consensus 556 ~~V~sl~fSpdg~~----Lasgs~Dg~I~VWd~~t~------~~~~~l~~h~~~I~~l~fspd-g~~Latgs~Dg~I~IW 624 (837)
.+.+.++|.+.|.. ||.|..||.|.+||.... ..+.++..|++.|..+.|++. +++||+|+.||.|.||
T Consensus 65 ~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iW 144 (1049)
T KOG0307|consen 65 NRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIW 144 (1049)
T ss_pred ccceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEe
Confidence 45678999886655 899999999999997652 334566789999999999996 4599999999999999
Q ss_pred EcCCCCceeEE-eeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeeEEecCCC---eeEEEEecCCCE-EEE
Q 003236 625 DTENPDYSLRT-FTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSG---ATQMRFQPRLGR-ILA 699 (837)
Q Consensus 625 Dl~~~~~~~~~-~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~~~~---i~sl~~sp~g~~-lla 699 (837)
|+.+.+.+... .....+.|.+++|+..-.++|++++.+|.+.|||++..+.+..+..... +..+.|+|+... +++
T Consensus 145 Dlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~ 224 (1049)
T KOG0307|consen 145 DLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLV 224 (1049)
T ss_pred ccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCceeeee
Confidence 99986543333 2224578999999988889999999999999999999887777765444 788999998754 555
Q ss_pred EEcCC---eEEEEECCCC-eEEEEEcCCCCCEEEEEEcCCC-CEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEE
Q 003236 700 AAIEN---YISILDVETQ-VCRLKLQGHKNQVHSVCWNTSG-EYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHS 773 (837)
Q Consensus 700 gs~dg---~I~iwDl~s~-~~~~~l~~h~~~V~sl~~spdg-~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~s 773 (837)
++.|. .|.+||+|.. .++.++.+|...|.++.|++.+ .+|++++ |+.|.+|+..++ +.+..+...++.+..
T Consensus 225 As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tg---Evl~~~p~~~nW~fd 301 (1049)
T KOG0307|consen 225 ASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTG---EVLGELPAQGNWCFD 301 (1049)
T ss_pred ecCCCCCceeEeecccccCCchhhhcccccceeeeccCCCCchhhhcccCCCCeeEecCCCc---eEeeecCCCCcceee
Confidence 55543 7999999865 6778888999999999999976 7777777 999999999998 888899888999999
Q ss_pred EEEeCCCC-EEEEEEcCCeEEEEECCCCc
Q 003236 774 CVFHPTFP-SLLVIGCYETLELWNMTENK 801 (837)
Q Consensus 774 v~fspdg~-~L~sgs~dg~I~IwDl~s~~ 801 (837)
+.|.|... .|++++.||.|.||.+.+..
T Consensus 302 v~w~pr~P~~~A~asfdgkI~I~sl~~~~ 330 (1049)
T KOG0307|consen 302 VQWCPRNPSVMAAASFDGKISIYSLQGTD 330 (1049)
T ss_pred eeecCCCcchhhhheeccceeeeeeecCC
Confidence 99999887 67788889999999987665
|
|
| >KOG1273 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.83 E-value=3.8e-19 Score=181.83 Aligned_cols=273 Identities=15% Similarity=0.262 Sum_probs=205.7
Q ss_pred cccCCCeEEcccCCCceEEeecCCCCCCCCccccccccCCCeeeeEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEE
Q 003236 502 LTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVL 581 (837)
Q Consensus 502 l~~~~~~v~~Gs~D~~v~~w~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~H~~~V~sl~fSpdg~~Lasgs~Dg~I~V 581 (837)
+.....+++.|+.|+.|.+|+... +..-+.+.+|..+|+|++||+||++|+|++.|..|.+
T Consensus 31 Fs~~G~~lAvGc~nG~vvI~D~~T-------------------~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~l 91 (405)
T KOG1273|consen 31 FSRWGDYLAVGCANGRVVIYDFDT-------------------FRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKL 91 (405)
T ss_pred eccCcceeeeeccCCcEEEEEccc-------------------cchhhhhhccccceeEEEecCCCCEeeeecCCceeEE
Confidence 344557999999999999994432 2334667899999999999999999999999999999
Q ss_pred EeCCCCeEEEEeccCCCCeEEEEEcCCC-CEEEEEeCCCeEEEEEcCCCCceeEEeec---cccceEEEEEcCCCCeEEE
Q 003236 582 WCTESFTVKSTLEEHTQWITDVRFSPSL-SRLATSSADRTVRVWDTENPDYSLRTFTG---HSTTVMSLDFHPSKEDLLC 657 (837)
Q Consensus 582 Wd~~t~~~~~~l~~h~~~I~~l~fspdg-~~Latgs~Dg~I~IWDl~~~~~~~~~~~~---h~~~V~sl~fspdg~~lla 657 (837)
||+..+.++..+. ...+|+.+.|+|.. +.++++-.+..-.+-++..+...+..... ......+..|++.|+ +++
T Consensus 92 wDl~~gs~l~rir-f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~-yIi 169 (405)
T KOG1273|consen 92 WDLLKGSPLKRIR-FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGK-YII 169 (405)
T ss_pred EeccCCCceeEEE-ccCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccCCCC-EEE
Confidence 9999999998886 77899999999943 33333334444566666643321111111 111223345777776 555
Q ss_pred EEeCCCcEEEEECCCCeeeeEEecC--CCeeEEEEecCCCEEEEEEcCCeEEEEECCCC-------eE--EEEEcC--CC
Q 003236 658 SCDNNSEIRYWSINNGSCAGVFKCQ--SGATQMRFQPRLGRILAAAIENYISILDVETQ-------VC--RLKLQG--HK 724 (837)
Q Consensus 658 sgs~Dg~I~vwDl~t~~~i~~~~~~--~~i~sl~~sp~g~~llags~dg~I~iwDl~s~-------~~--~~~l~~--h~ 724 (837)
+|...|.+.++|..+-+++..++.. ..|..+.++..+..|+.-+.|..|+.|+++.- ++ ...+.. ..
T Consensus 170 tGtsKGkllv~~a~t~e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk 249 (405)
T KOG1273|consen 170 TGTSKGKLLVYDAETLECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNK 249 (405)
T ss_pred EecCcceEEEEecchheeeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhh
Confidence 8888999999999999999888764 46889999999999999999999999998731 11 111111 12
Q ss_pred CCEEEEEEcCCCCEEEEEe--CCeEEEEEcCCCCCceeEEEeecCC-CceEEEEEeCCCCEEEEEEcCCeEEEEECCC
Q 003236 725 NQVHSVCWNTSGEYLASVS--DELVRVWSIGSGSKGECIHELSCTG-NKFHSCVFHPTFPSLLVIGCYETLELWNMTE 799 (837)
Q Consensus 725 ~~V~sl~~spdg~~Lasgs--Dg~I~IwDl~s~~~~~~i~~~~~~~-~~I~sv~fspdg~~L~sgs~dg~I~IwDl~s 799 (837)
..-.+++|+.+|.|+++++ -..++||.-..| ..++.+.+.. .....+.|+|-...|++. ..|.|++|....
T Consensus 250 ~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~G---sLVKILhG~kgE~l~DV~whp~rp~i~si-~sg~v~iw~~~~ 323 (405)
T KOG1273|consen 250 LQWKKCCFSGDGEYVCAGSARAHALYIWEKSIG---SLVKILHGTKGEELLDVNWHPVRPIIASI-ASGVVYIWAVVQ 323 (405)
T ss_pred hhhhheeecCCccEEEeccccceeEEEEecCCc---ceeeeecCCchhheeecccccceeeeeec-cCCceEEEEeec
Confidence 2346789999999999988 558999999888 6777777766 667889999998877777 778999998643
|
|
| >KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.83 E-value=2.1e-20 Score=218.64 Aligned_cols=274 Identities=20% Similarity=0.301 Sum_probs=216.9
Q ss_pred EEEEcCCCC-EEEEEE----------CCCcEEEEeCCC--C----eEEEEeccCCCCeEEEEEcCCCCE----EEEEeCC
Q 003236 560 SCHFSPDGK-LLATGG----------HDKKAVLWCTES--F----TVKSTLEEHTQWITDVRFSPSLSR----LATSSAD 618 (837)
Q Consensus 560 sl~fSpdg~-~Lasgs----------~Dg~I~VWd~~t--~----~~~~~l~~h~~~I~~l~fspdg~~----Latgs~D 618 (837)
.++|+|++. ++|+|. .+.++.||.+.. . +.+..+. -....++++|.+.+.. |+.|.+|
T Consensus 11 ~~awSp~~~~~laagt~aq~~D~sfst~~slEifeld~~~~~~dlk~~~s~~-s~~rF~kL~W~~~g~~~~GlIaGG~ed 89 (1049)
T KOG0307|consen 11 TFAWSPASPPLLAAGTAAQQFDASFSTSASLEIFELDFSDESSDLKPVGSLQ-SSNRFNKLAWGSYGSHSHGLIAGGLED 89 (1049)
T ss_pred eEEecCCCchhhHHHhhhhccccccccccccceeeecccCcccccccccccc-ccccceeeeecccCCCccceeeccccC
Confidence 478999887 566553 245666665432 1 2233332 3457889999987665 8899999
Q ss_pred CeEEEEEcCCC-----CceeEEeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeeEEe---cCCCeeEEEE
Q 003236 619 RTVRVWDTENP-----DYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK---CQSGATQMRF 690 (837)
Q Consensus 619 g~I~IWDl~~~-----~~~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~---~~~~i~sl~~ 690 (837)
|.|.+||...- ...+..+..|.+.|..++|++...+++++|+.||.|.|||+++-+.-.... ..+.|.+++|
T Consensus 90 G~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~~~~~~~eI~~lsW 169 (1049)
T KOG0307|consen 90 GNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPGSQAPPSEIKCLSW 169 (1049)
T ss_pred CceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCCCCCCcccceEecc
Confidence 99999998752 234567788999999999999999999999999999999998755444332 3567999999
Q ss_pred ecCCCEEE-EEEcCCeEEEEECCCCeEEEEEcCCCC--CEEEEEEcCCCC-EEEEEe--CC--eEEEEEcCCCCCceeEE
Q 003236 691 QPRLGRIL-AAAIENYISILDVETQVCRLKLQGHKN--QVHSVCWNTSGE-YLASVS--DE--LVRVWSIGSGSKGECIH 762 (837)
Q Consensus 691 sp~g~~ll-ags~dg~I~iwDl~s~~~~~~l~~h~~--~V~sl~~spdg~-~Lasgs--Dg--~I~IwDl~s~~~~~~i~ 762 (837)
+..-.+|+ +++.+|.+.|||++..+.+..+..+.. .+..|.|+|++. .|++++ |+ .|.+||+|... ..+.
T Consensus 170 NrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~as--sP~k 247 (1049)
T KOG0307|consen 170 NRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFAS--SPLK 247 (1049)
T ss_pred chhhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccC--Cchh
Confidence 98766655 555678999999999988888876655 467899999864 455555 33 89999998764 5677
Q ss_pred EeecCCCceEEEEEeCCC-CEEEEEEcCCeEEEEECCCCcEE-EeccCCCCeeEEEEeCCCC-EEEEEECCCcEEEe
Q 003236 763 ELSCTGNKFHSCVFHPTF-PSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNG-MVASASHDKCVKIW 836 (837)
Q Consensus 763 ~~~~~~~~I~sv~fspdg-~~L~sgs~dg~I~IwDl~s~~~~-~l~~h~~~V~sla~spdg~-~LaSgs~DG~I~IW 836 (837)
++.+|...|.++.|++.+ .++++++.|+.|.+|+.++++.+ .+......+..+.|+|... .+++++-||.|-||
T Consensus 248 ~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~~~nW~fdv~w~pr~P~~~A~asfdgkI~I~ 324 (1049)
T KOG0307|consen 248 ILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPAQGNWCFDVQWCPRNPSVMAAASFDGKISIY 324 (1049)
T ss_pred hhcccccceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecCCCCcceeeeeecCCCcchhhhheeccceeee
Confidence 788999999999999977 88899999999999999999998 6667788999999999775 88889999999987
|
|
| >KOG4328 consensus WD40 protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.83 E-value=2.4e-19 Score=191.38 Aligned_cols=256 Identities=16% Similarity=0.247 Sum_probs=202.7
Q ss_pred EeCCCCeEEEEeccCCCCeEEEEEcCCC--CEEEEEeCCCeEEEEEcC---CCCceeEEeeccccceEEEEEcCCCCeEE
Q 003236 582 WCTESFTVKSTLEEHTQWITDVRFSPSL--SRLATSSADRTVRVWDTE---NPDYSLRTFTGHSTTVMSLDFHPSKEDLL 656 (837)
Q Consensus 582 Wd~~t~~~~~~l~~h~~~I~~l~fspdg--~~Latgs~Dg~I~IWDl~---~~~~~~~~~~~h~~~V~sl~fspdg~~ll 656 (837)
+|+.+......++.+.++|++++|+|.. +++++|+..|.|-+||+. .....+..+..|..+|.+|.|+|.+...+
T Consensus 171 l~l~~~~~~~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i 250 (498)
T KOG4328|consen 171 LDLDDYRILNVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQI 250 (498)
T ss_pred cccccceecceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhhe
Confidence 4444555556677788999999999953 688999999999999995 22334677888999999999999988889
Q ss_pred EEEeCCCcEEEEECCCCeeeeEEec---CCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeE-EEEEcCCCCCEEEEEE
Q 003236 657 CSCDNNSEIRYWSINNGSCAGVFKC---QSGATQMRFQPRLGRILAAAIENYISILDVETQVC-RLKLQGHKNQVHSVCW 732 (837)
Q Consensus 657 asgs~Dg~I~vwDl~t~~~i~~~~~---~~~i~sl~~sp~g~~llags~dg~I~iwDl~s~~~-~~~l~~h~~~V~sl~~ 732 (837)
++.+.||+|++-|++.......+.. ...+..+.|+.+...++++..-|.+.+||++++.. ...+.-|...|++|++
T Consensus 251 ~ssSyDGtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~ 330 (498)
T KOG4328|consen 251 YSSSYDGTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVAL 330 (498)
T ss_pred eeeccCceeeeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhhcccceeec
Confidence 9999999999999997655444443 23467788888888899998888999999998744 6667779999999999
Q ss_pred cCCC-CEEEEEe-CCeEEEEEcCCCCCce-eEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECC----CCcEEEe
Q 003236 733 NTSG-EYLASVS-DELVRVWSIGSGSKGE-CIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMT----ENKTLTL 805 (837)
Q Consensus 733 spdg-~~Lasgs-Dg~I~IwDl~s~~~~~-~i~~~~~~~~~I~sv~fspdg~~L~sgs~dg~I~IwDl~----s~~~~~l 805 (837)
+|-. .+|++++ |++++|||++.-.... ++.....|...|.++.|||.+..|++.+.|..|+|||.. .......
T Consensus 331 NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~~~p~~~ 410 (498)
T KOG4328|consen 331 NPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAKDEPLGT 410 (498)
T ss_pred CCCCchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCCceEEeecccccccCCccce
Confidence 9965 5677788 9999999998754333 344555688999999999999889999999999999984 2233333
Q ss_pred ccCCC------CeeEEEEeCCCCEEEEEECCCcEEEeC
Q 003236 806 SAHDK------LVSSLAASTVNGMVASASHDKCVKIWK 837 (837)
Q Consensus 806 ~~h~~------~V~sla~spdg~~LaSgs~DG~I~IWd 837 (837)
..|.. ......|.|+..+|++|..-..|-|+|
T Consensus 411 I~Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~ 448 (498)
T KOG4328|consen 411 IPHNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFD 448 (498)
T ss_pred eeccCcccccccchhheeCCCccEEEEeccCcceeEEc
Confidence 33432 234568999999999998888888775
|
|
| >KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.2e-18 Score=191.08 Aligned_cols=114 Identities=24% Similarity=0.405 Sum_probs=98.6
Q ss_pred CCCEEEEEEcC-CCCEEEEEe-CCeEEEEEcCCCCC----ceeEEEeecCCCceEEEEEeCCC-CEEEEEEcCCeEEEEE
Q 003236 724 KNQVHSVCWNT-SGEYLASVS-DELVRVWSIGSGSK----GECIHELSCTGNKFHSCVFHPTF-PSLLVIGCYETLELWN 796 (837)
Q Consensus 724 ~~~V~sl~~sp-dg~~Lasgs-Dg~I~IwDl~s~~~----~~~i~~~~~~~~~I~sv~fspdg-~~L~sgs~dg~I~IwD 796 (837)
...|+.+.|+| |...|+++. ||.|++|.+..+.. ...-..+..|...|+++.|+|-. +.|++++.|-+|++||
T Consensus 627 gt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWD 706 (1012)
T KOG1445|consen 627 GTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWD 706 (1012)
T ss_pred CceeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeee
Confidence 45789999999 556777777 99999999986543 23455678899999999999954 6788899999999999
Q ss_pred CCCCcEE-EeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 003236 797 MTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 837 (837)
Q Consensus 797 l~s~~~~-~l~~h~~~V~sla~spdg~~LaSgs~DG~I~IWd 837 (837)
+.+.+.. .+.+|.+.|.+++|+|||+.+|+.+.||+|++|+
T Consensus 707 l~~~~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~ 748 (1012)
T KOG1445|consen 707 LANAKLYSRLVGHTDQIFGIAWSPDGRRIATVCKDGTLRVYE 748 (1012)
T ss_pred hhhhhhhheeccCcCceeEEEECCCCcceeeeecCceEEEeC
Confidence 9998876 8999999999999999999999999999999985
|
|
| >KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.82 E-value=4.9e-19 Score=193.84 Aligned_cols=243 Identities=19% Similarity=0.262 Sum_probs=199.2
Q ss_pred EEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeEEeeccccceEEEEEcCCCCeEEEEEeCCCcEEEE
Q 003236 589 VKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYW 668 (837)
Q Consensus 589 ~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vw 668 (837)
+...+.+|++.|.||...|.|.+|++|+.||+|+||.+.++.+ ++++. ..+.|.||+|+|.+...+++...+..+.|.
T Consensus 392 ~~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRc-vr~~~-~d~~I~~vaw~P~~~~~vLAvA~~~~~~iv 469 (733)
T KOG0650|consen 392 CALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRC-VRTVQ-FDSEIRSVAWNPLSDLCVLAVAVGECVLIV 469 (733)
T ss_pred eeeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceE-EEEEe-ecceeEEEEecCCCCceeEEEEecCceEEe
Confidence 4456789999999999999999999999999999999999875 55544 356899999999876544444444444444
Q ss_pred ECCCC--------------------------------------eeeeEEecCCCeeEEEEecCCCEEEEEEcC---CeEE
Q 003236 669 SINNG--------------------------------------SCAGVFKCQSGATQMRFQPRLGRILAAAIE---NYIS 707 (837)
Q Consensus 669 Dl~t~--------------------------------------~~i~~~~~~~~i~sl~~sp~g~~llags~d---g~I~ 707 (837)
+..-| ....++.+...|..+.|+.+|.+|++...+ ..|.
T Consensus 470 np~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~Vl 549 (733)
T KOG0650|consen 470 NPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVL 549 (733)
T ss_pred CccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceEE
Confidence 33211 012345566778999999999999998775 4799
Q ss_pred EEECCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEE
Q 003236 708 ILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIG 787 (837)
Q Consensus 708 iwDl~s~~~~~~l~~h~~~V~sl~~spdg~~LasgsDg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fspdg~~L~sgs 787 (837)
|+++.......-|....+.|.++.|+|...+|++++-..|+|||+... ..+..+......|.+++++|.|..|++++
T Consensus 550 iHQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaTq~~vRiYdL~kq---elvKkL~tg~kwiS~msihp~GDnli~gs 626 (733)
T KOG0650|consen 550 IHQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVATQRSVRIYDLSKQ---ELVKKLLTGSKWISSMSIHPNGDNLILGS 626 (733)
T ss_pred EEecccccccCchhhcCCceeEEEecCCCceEEEEeccceEEEehhHH---HHHHHHhcCCeeeeeeeecCCCCeEEEec
Confidence 999988877767766778899999999999999999999999999875 55666666677899999999999999999
Q ss_pred cCCeEEEEECCCCcEE--EeccCCCCeeEEEEeCCCCEEEEEECCCcEEEe
Q 003236 788 CYETLELWNMTENKTL--TLSAHDKLVSSLAASTVNGMVASASHDKCVKIW 836 (837)
Q Consensus 788 ~dg~I~IwDl~s~~~~--~l~~h~~~V~sla~spdg~~LaSgs~DG~I~IW 836 (837)
.|+.+..||+.-.... ++..|...|++|+|++.-.++++|++||++.||
T Consensus 627 ~d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vf 677 (733)
T KOG0650|consen 627 YDKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVF 677 (733)
T ss_pred CCCeeEEEEcccCcchhHHhhhhhhhhhhhhhccccceeeeecCCCcEEEE
Confidence 9999999998765333 788999999999999999999999999999886
|
|
| >KOG2096 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.5e-18 Score=177.72 Aligned_cols=243 Identities=18% Similarity=0.268 Sum_probs=183.3
Q ss_pred EEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCc----eeEEeeccccceEEEEEcCCCCeEEEEEeCCCcEE
Q 003236 591 STLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDY----SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIR 666 (837)
Q Consensus 591 ~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~~~~----~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~ 666 (837)
..+++|.+.|++++|+.||++|+|++.|++|+||++++-.. +++.-. .-+..+.+.|.||-..+++++-...+++
T Consensus 80 ~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nv-e~dhpT~V~FapDc~s~vv~~~~g~~l~ 158 (420)
T KOG2096|consen 80 SVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNV-EYDHPTRVVFAPDCKSVVVSVKRGNKLC 158 (420)
T ss_pred hhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccc-cCCCceEEEECCCcceEEEEEccCCEEE
Confidence 35789999999999999999999999999999999986321 111111 1235678999999999999998888999
Q ss_pred EEECCCC---eeeeEEe----------cCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEc
Q 003236 667 YWSINNG---SCAGVFK----------CQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWN 733 (837)
Q Consensus 667 vwDl~t~---~~i~~~~----------~~~~i~sl~~sp~g~~llags~dg~I~iwDl~s~~~~~~l~~h~~~V~sl~~s 733 (837)
+|.+... .....+. +.-.+..+-+...+.+|++++.|..|.+||++ |..+..+......-+..+.+
T Consensus 159 vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~~aavS 237 (420)
T KOG2096|consen 159 VYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQSSNYDAAVS 237 (420)
T ss_pred EEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-CceeeeeccccccccceeeC
Confidence 9987532 2111111 12235566667778899999999999999999 88887777666677788999
Q ss_pred CCCCEEEEEe-CCeEEEEEcCCCC-----CceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCC-------
Q 003236 734 TSGEYLASVS-DELVRVWSIGSGS-----KGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTEN------- 800 (837)
Q Consensus 734 pdg~~Lasgs-Dg~I~IwDl~s~~-----~~~~i~~~~~~~~~I~sv~fspdg~~L~sgs~dg~I~IwDl~s~------- 800 (837)
|+|++|++++ .-.|+||.+--.+ ....+..+++|...|..++|+++...+++.+.||+++|||.+-.
T Consensus 238 P~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~~qDp 317 (420)
T KOG2096|consen 238 PDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEAGQDP 317 (420)
T ss_pred CCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEeeccceEecCCCc
Confidence 9999999998 7789999874322 12345678899999999999999999999999999999997422
Q ss_pred cEE-----EeccCCCCeeEEEEeCCCCEEEEEECCCcEEEe
Q 003236 801 KTL-----TLSAHDKLVSSLAASTVNGMVASASHDKCVKIW 836 (837)
Q Consensus 801 ~~~-----~l~~h~~~V~sla~spdg~~LaSgs~DG~I~IW 836 (837)
+.+ .+.+..+....++.+|.|+.||.+. ...|++|
T Consensus 318 k~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~-gs~l~~~ 357 (420)
T KOG2096|consen 318 KILKEGSAPLHAAGSEPVRLELSPSGDSLAVSF-GSDLKVF 357 (420)
T ss_pred hHhhcCCcchhhcCCCceEEEeCCCCcEEEeec-CCceEEE
Confidence 122 1222334455899999999888653 2345544
|
|
| >KOG0302 consensus Ribosome Assembly protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.81 E-value=9.2e-19 Score=182.95 Aligned_cols=241 Identities=22% Similarity=0.339 Sum_probs=189.7
Q ss_pred ccCCCCeEEEEEcCC--CCEEEEEeCCCeEEEEEcCC---------------CCceeEEeeccccceEEEEEcCCCCeEE
Q 003236 594 EEHTQWITDVRFSPS--LSRLATSSADRTVRVWDTEN---------------PDYSLRTFTGHSTTVMSLDFHPSKEDLL 656 (837)
Q Consensus 594 ~~h~~~I~~l~fspd--g~~Latgs~Dg~I~IWDl~~---------------~~~~~~~~~~h~~~V~sl~fspdg~~ll 656 (837)
..|.+.|+.+.-.+- ..+.++-+..|.|.|||+.. ...++.++.+|...=+.|+|+|-....+
T Consensus 148 i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~L 227 (440)
T KOG0302|consen 148 IPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGRL 227 (440)
T ss_pred cccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeeccccccccc
Confidence 457788888877764 44566667789999999862 1235678889999999999999766667
Q ss_pred EEEeCCCcEEEEECCCCeeee----EEecCCCeeEEEEecCC-CEEEEEEcCCeEEEEECCCC---eEEEEEcCCCCCEE
Q 003236 657 CSCDNNSEIRYWSINNGSCAG----VFKCQSGATQMRFQPRL-GRILAAAIENYISILDVETQ---VCRLKLQGHKNQVH 728 (837)
Q Consensus 657 asgs~Dg~I~vwDl~t~~~i~----~~~~~~~i~sl~~sp~g-~~llags~dg~I~iwDl~s~---~~~~~l~~h~~~V~ 728 (837)
++|..-+.|++|...++.-.. ...+...|..++|+|.. +.|++|+.|++|+|||++.+ .++.+ +.|.+.|+
T Consensus 228 lsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~-kAh~sDVN 306 (440)
T KOG0302|consen 228 LSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVST-KAHNSDVN 306 (440)
T ss_pred ccCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEe-eccCCcee
Confidence 788888899999998865322 22245678899999965 55777888999999999987 34443 78999999
Q ss_pred EEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCC-CEEEEEEcCCeEEEEECCCCcE----
Q 003236 729 SVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTF-PSLLVIGCYETLELWNMTENKT---- 802 (837)
Q Consensus 729 sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fspdg-~~L~sgs~dg~I~IwDl~s~~~---- 802 (837)
.|.|+.+-.+|++|+ ||+++|||++..+...++..++.|..+|+++.|+|.. ..|++++.|..|.|||+.-..-
T Consensus 307 VISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsvE~D~ee~ 386 (440)
T KOG0302|consen 307 VISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLSVEADEEEI 386 (440)
T ss_pred eEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEeccCCCcEEEEEeeccCChhhh
Confidence 999999888999999 9999999999987778999999999999999999964 5678888899999999853221
Q ss_pred -------------EEeccC--CCCeeEEEEeCCC-CEEEEEECCCcEEEe
Q 003236 803 -------------LTLSAH--DKLVSSLAASTVN-GMVASASHDKCVKIW 836 (837)
Q Consensus 803 -------------~~l~~h--~~~V~sla~spdg-~~LaSgs~DG~I~IW 836 (837)
--+.-| ...|..+.|++.- .+|++.+.|| +.||
T Consensus 387 ~~~a~~~L~dlPpQLLFVHqGQke~KevhWH~QiPG~lvsTa~dG-fnVf 435 (440)
T KOG0302|consen 387 DQEAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQIPGLLVSTAIDG-FNVF 435 (440)
T ss_pred ccccccchhcCCceeEEEecchhHhhhheeccCCCCeEEEecccc-eeEE
Confidence 022334 4568889999854 5889999998 4454
|
|
| >KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.81 E-value=2e-18 Score=185.23 Aligned_cols=220 Identities=17% Similarity=0.257 Sum_probs=186.0
Q ss_pred CeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeEEe
Q 003236 557 KVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTF 636 (837)
Q Consensus 557 ~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~~~~~~~~~ 636 (837)
.-+|++......|+++|+..++|+|||+....+.+.+++|...|+++.++....|||+++..|.|.|..+.++.. ...+
T Consensus 81 ~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~-tt~f 159 (673)
T KOG4378|consen 81 NAFCVACASQSLYEISGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQK-TTTF 159 (673)
T ss_pred hHHHHhhhhcceeeeccCcCceeeehhhHHHHHhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCcc-ccce
Confidence 345665555568999999999999999998778888999999999999999999999999999999999998654 3344
Q ss_pred ecc-ccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeeEEe--cCCCeeEEEEecCC-CEEEEEEcCCeEEEEECC
Q 003236 637 TGH-STTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK--CQSGATQMRFQPRL-GRILAAAIENYISILDVE 712 (837)
Q Consensus 637 ~~h-~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~--~~~~i~sl~~sp~g-~~llags~dg~I~iwDl~ 712 (837)
... ...|.-+.|++....+|.+++.+|.|.+||+.....+..+. +..+...|+|+|.. ..|++.+.|..|++||.+
T Consensus 160 ~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~ 239 (673)
T KOG4378|consen 160 TIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIR 239 (673)
T ss_pred ecCCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEecccceEEEeecc
Confidence 333 45566899999999999999999999999999877666554 45678889999965 456778899999999999
Q ss_pred CCeEEEEEcCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCC
Q 003236 713 TQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTF 780 (837)
Q Consensus 713 s~~~~~~l~~h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fspdg 780 (837)
..+....+. ...+...++|.++|.+|++|+ .|.|..||++... .++..+..|...|++++|-+.-
T Consensus 240 s~~s~~~l~-y~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k--~Pv~v~sah~~sVt~vafq~s~ 305 (673)
T KOG4378|consen 240 SQASTDRLT-YSHPLSTVAFSECGTYLCAGNSKGELIAYDMRSTK--APVAVRSAHDASVTRVAFQPSP 305 (673)
T ss_pred cccccceee-ecCCcceeeecCCceEEEeecCCceEEEEecccCC--CCceEeeecccceeEEEeeecc
Confidence 877766665 567899999999999999999 9999999999764 6788888899999999998764
|
|
| >KOG0270 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.6e-18 Score=184.77 Aligned_cols=252 Identities=19% Similarity=0.274 Sum_probs=186.5
Q ss_pred ccCCCeEEcccCCCceEEeecC--CCCCCCCccccccccCCCeeeeEEEEecCCCCCeEEEEEcCCC-CEEEEEECCCcE
Q 003236 503 TDMDRFVDDGSLDDNVESFLSP--DDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDG-KLLATGGHDKKA 579 (837)
Q Consensus 503 ~~~~~~v~~Gs~D~~v~~w~s~--~~~~~~~~~~~~~~~~~g~~~~~~~~l~~H~~~V~sl~fSpdg-~~Lasgs~Dg~I 579 (837)
.+..+++|.|.+|..|.+|... +...+.-.++....-.+...-+.-..-.+|++.|.+++|+..- ..||+||.|.+|
T Consensus 189 ~~~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV 268 (463)
T KOG0270|consen 189 GGAGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTV 268 (463)
T ss_pred CCCcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceE
Confidence 5567899999999999999442 2222222222111111111111112234799999999998854 479999999999
Q ss_pred EEEeCCCCeEEEEeccCCCCeEEEEEcC-CCCEEEEEeCCCeEEEEEcCCCCceeEEeeccccceEEEEEcCCCCeEEEE
Q 003236 580 VLWCTESFTVKSTLEEHTQWITDVRFSP-SLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCS 658 (837)
Q Consensus 580 ~VWd~~t~~~~~~l~~h~~~I~~l~fsp-dg~~Latgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~sl~fspdg~~llas 658 (837)
++||+.++++..++..|.+.|.++.|+| ...+|++|+.|++|.+.|.+.....-..+ ...+.|..++|.|.....+++
T Consensus 269 ~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~w-k~~g~VEkv~w~~~se~~f~~ 347 (463)
T KOG0270|consen 269 KLWDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEW-KFDGEVEKVAWDPHSENSFFV 347 (463)
T ss_pred EEEEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceE-EeccceEEEEecCCCceeEEE
Confidence 9999999999999999999999999999 47899999999999999999644322222 245789999999999989989
Q ss_pred EeCCCcEEEEECCCC-eeeeEEec-CCCeeEEEEecCC-CEEEEEEcCCeEEEEECCCCeE--EEEEcCCCCCEEEEEEc
Q 003236 659 CDNNSEIRYWSINNG-SCAGVFKC-QSGATQMRFQPRL-GRILAAAIENYISILDVETQVC--RLKLQGHKNQVHSVCWN 733 (837)
Q Consensus 659 gs~Dg~I~vwDl~t~-~~i~~~~~-~~~i~sl~~sp~g-~~llags~dg~I~iwDl~s~~~--~~~l~~h~~~V~sl~~s 733 (837)
+..||+|+-+|++.. +++..+.. ..+|.+++++... +.+++++.|+.|++|++..... +..-.-.-+...|.++.
T Consensus 348 ~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~~v~~~~~~~~rl~c~~~~ 427 (463)
T KOG0270|consen 348 STDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPKSVKEHSFKLGRLHCFALD 427 (463)
T ss_pred ecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeeccccceEEEEeecCCCCcccccccccccceeecccC
Confidence 999999999999975 88888774 6789999998854 4577888899999999875433 22111112346677888
Q ss_pred CCCCE-EEEEe-CCeEEEEEcCCC
Q 003236 734 TSGEY-LASVS-DELVRVWSIGSG 755 (837)
Q Consensus 734 pdg~~-Lasgs-Dg~I~IwDl~s~ 755 (837)
|+-.+ ++.|+ .+.++|||+.+.
T Consensus 428 ~~~a~~la~GG~k~~~~vwd~~~~ 451 (463)
T KOG0270|consen 428 PDVAFTLAFGGEKAVLRVWDIFTN 451 (463)
T ss_pred CCcceEEEecCccceEEEeecccC
Confidence 87654 44455 668999999876
|
|
| >KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.80 E-value=5.7e-19 Score=176.97 Aligned_cols=285 Identities=19% Similarity=0.202 Sum_probs=203.2
Q ss_pred EEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEec-cCCCCeEEEEEcCCCCEEEEEeCCCeEEEEE
Q 003236 547 EFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLE-EHTQWITDVRFSPSLSRLATSSADRTVRVWD 625 (837)
Q Consensus 547 ~~~~l~~H~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~-~h~~~I~~l~fspdg~~Latgs~Dg~I~IWD 625 (837)
++.++++|.+.|+|+.|-.+++ |.+|...|.|++|++.+.+....++ .|...|+.+.-.|+ ..|.+-+.|+.+.+|+
T Consensus 6 P~fvLRp~~~~v~s~~fqa~~r-L~sg~~~G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p~-d~l~tqgRd~~L~lw~ 83 (323)
T KOG0322|consen 6 PFFVLRPHSSSVTSVLFQANER-LMSGLSVGIVKMWVLQTERDLPLIRLFGRLFITNLQSIPN-DSLDTQGRDPLLILWT 83 (323)
T ss_pred CeeEeccccchheehhhccchh-hhcccccceEEEEEeecCccchhhhhhccceeeceeecCC-cchhhcCCCceEEEEE
Confidence 4677889999999999998875 8889999999999999988888887 67889999999887 5688889999999999
Q ss_pred cCCCCceeEEeeccccceEEEEEcCCC-----C---eEEEEEeCCC-cEEEEECCCCeeeeEEec-----CCCeeEEEEe
Q 003236 626 TENPDYSLRTFTGHSTTVMSLDFHPSK-----E---DLLCSCDNNS-EIRYWSINNGSCAGVFKC-----QSGATQMRFQ 691 (837)
Q Consensus 626 l~~~~~~~~~~~~h~~~V~sl~fspdg-----~---~llasgs~Dg-~I~vwDl~t~~~i~~~~~-----~~~i~sl~~s 691 (837)
+..... ...|.-.++++.|.+.. . .+++.-+... .+.+-|......+..... .+.+.|..+.
T Consensus 84 ia~s~~----i~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~ 159 (323)
T KOG0322|consen 84 IAYSAF----ISIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQDKD 159 (323)
T ss_pred ccCcce----EEEeeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceeeeecc
Confidence 986432 22244445555555321 1 1111111000 111122211111111111 2335555533
Q ss_pred c-CCC--EEEEEEcCCeEEEEECCCCeE----------EEEEcCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCC
Q 003236 692 P-RLG--RILAAAIENYISILDVETQVC----------RLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSK 757 (837)
Q Consensus 692 p-~g~--~llags~dg~I~iwDl~s~~~----------~~~l~~h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~ 757 (837)
. .+. .+++|.++|.|.+||+.++.. ......|..+|.++.|.+.-..=++++ +..+..|++.....
T Consensus 160 ~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~g 239 (323)
T KOG0322|consen 160 HACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTG 239 (323)
T ss_pred ccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccceeeeeccccC
Confidence 2 222 355667789999999998733 334456899999999987555445555 77888998875421
Q ss_pred -ceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE-EeccCCCCeeEEEEeCCCCEEEEEECCCcEEE
Q 003236 758 -GECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKI 835 (837)
Q Consensus 758 -~~~i~~~~~~~~~I~sv~fspdg~~L~sgs~dg~I~IwDl~s~~~~-~l~~h~~~V~sla~spdg~~LaSgs~DG~I~I 835 (837)
...-.++......+..+.+-||++.+++++.|+.|+||+.++...+ .+..|.+.|++++|+|+..++|+++.|++|.+
T Consensus 240 slq~~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLkyHsagvn~vAfspd~~lmAaaskD~rISL 319 (323)
T KOG0322|consen 240 SLQIRKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKYHSAGVNAVAFSPDCELMAAASKDARISL 319 (323)
T ss_pred cccccceEEecCCCccceEEccCCcEEeecccCCcEEEEEeccCCchhhhhhhhcceeEEEeCCCCchhhhccCCceEEe
Confidence 1222233344567888999999999999999999999999999988 77889999999999999999999999999999
Q ss_pred eC
Q 003236 836 WK 837 (837)
Q Consensus 836 Wd 837 (837)
|+
T Consensus 320 Wk 321 (323)
T KOG0322|consen 320 WK 321 (323)
T ss_pred ee
Confidence 96
|
|
| >KOG4227 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.80 E-value=4.1e-18 Score=177.95 Aligned_cols=284 Identities=15% Similarity=0.218 Sum_probs=212.8
Q ss_pred EEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCC------CeEEEEec-cCCCCeEEEEEcCCCCEEEEEeCCCeE
Q 003236 549 QLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES------FTVKSTLE-EHTQWITDVRFSPSLSRLATSSADRTV 621 (837)
Q Consensus 549 ~~l~~H~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t------~~~~~~l~-~h~~~I~~l~fspdg~~Latgs~Dg~I 621 (837)
+-+.+|.+.|.++.|+.++++||+|+.|..++||+++. .+++.... .|...|.|++|...+++|++|..+++|
T Consensus 50 KD~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~V 129 (609)
T KOG4227|consen 50 KDVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTV 129 (609)
T ss_pred hhhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCccee
Confidence 44679999999999999999999999999999999763 34444443 466899999999999999999999999
Q ss_pred EEEEcCCCCceeEEee--ccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCe----eeeEEecCCCeeEEEEecCCC
Q 003236 622 RVWDTENPDYSLRTFT--GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS----CAGVFKCQSGATQMRFQPRLG 695 (837)
Q Consensus 622 ~IWDl~~~~~~~~~~~--~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~----~i~~~~~~~~i~sl~~sp~g~ 695 (837)
.+.|+++... +..+. ...+.|+.+..+|. ..+|++.+.++.|.+||++... ++...........+.|+|...
T Consensus 130 I~HDiEt~qs-i~V~~~~~~~~~VY~m~~~P~-DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~P 207 (609)
T KOG4227|consen 130 IKHDIETKQS-IYVANENNNRGDVYHMDQHPT-DNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPETP 207 (609)
T ss_pred Eeeeccccee-eeeecccCcccceeecccCCC-CceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecCCCc
Confidence 9999998653 33332 12358999999999 4577788889999999998654 333333456788999999765
Q ss_pred E-EEEEEcCCeEEEEECCCCe-EEEEEcC------CCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeec
Q 003236 696 R-ILAAAIENYISILDVETQV-CRLKLQG------HKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSC 766 (837)
Q Consensus 696 ~-llags~dg~I~iwDl~s~~-~~~~l~~------h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~ 766 (837)
. |++.+..+.+.+||.+... .+....+ ....-.++.|+|.|..|.+-- ...-.+||+-+.. ..+..+..
T Consensus 208 ~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~R--~~V~k~D~ 285 (609)
T KOG4227|consen 208 ALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFISQR--CFVLKSDH 285 (609)
T ss_pred eeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCEEeeeeccc--ceeEeccC
Confidence 5 5566667899999998653 2222211 122335788999999888766 4466678876642 22222221
Q ss_pred ------CCCceEEEEEeCCCCEEEEEEcCCeEEEEECCC------------------------CcEEEeccCCCCeeEEE
Q 003236 767 ------TGNKFHSCVFHPTFPSLLVIGCYETLELWNMTE------------------------NKTLTLSAHDKLVSSLA 816 (837)
Q Consensus 767 ------~~~~I~sv~fspdg~~L~sgs~dg~I~IwDl~s------------------------~~~~~l~~h~~~V~sla 816 (837)
....+.+|+|..|.. |++|+.+=.|++|.+.. +....+.+|...++.+.
T Consensus 286 N~~GY~N~~T~KS~~F~~D~~-v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~~~VLrGHRSv~NQVR 364 (609)
T KOG4227|consen 286 NPNGYCNIKTIKSMTFIDDYT-VATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEKELTVLRGHRSVPNQVR 364 (609)
T ss_pred CCCcceeeeeeeeeeeeccee-eeccCcccceEEEecCCCccccCccccCcchhhCchhheecceeEEEeccccccccee
Confidence 123467788887766 88888888999998732 12236789999999999
Q ss_pred EeCCCCEEEEEECCCcEEEeC
Q 003236 817 ASTVNGMVASASHDKCVKIWK 837 (837)
Q Consensus 817 ~spdg~~LaSgs~DG~I~IWd 837 (837)
|++...+|++.+-...++||-
T Consensus 365 F~~H~~~l~SSGVE~~~KlWS 385 (609)
T KOG4227|consen 365 FSQHNNLLVSSGVENSFKLWS 385 (609)
T ss_pred ecCCcceEeccchhhheeccc
Confidence 999999999999999999993
|
|
| >KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.79 E-value=9.8e-18 Score=176.13 Aligned_cols=228 Identities=14% Similarity=0.261 Sum_probs=186.6
Q ss_pred EeccCCCCeEEEEEcC-CCCEEEEEeCCCeEEEEEcCCCC------ceeEEeeccccceEEEEEcCCCCeEEEEEeCCCc
Q 003236 592 TLEEHTQWITDVRFSP-SLSRLATSSADRTVRVWDTENPD------YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSE 664 (837)
Q Consensus 592 ~l~~h~~~I~~l~fsp-dg~~Latgs~Dg~I~IWDl~~~~------~~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~ 664 (837)
.+.+|+++|.+++|+| +...||+||+|.+|.||.+..+. .++..+.+|...|-.+.|+|.-.++|++++.|.+
T Consensus 76 ~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~ 155 (472)
T KOG0303|consen 76 LVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNT 155 (472)
T ss_pred CccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCce
Confidence 3568999999999999 57789999999999999987543 3577899999999999999999999999999999
Q ss_pred EEEEECCCCeeeeEEecCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEcCCCC-CEEEEEEcCCCCEEEEEe
Q 003236 665 IRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKN-QVHSVCWNTSGEYLASVS 743 (837)
Q Consensus 665 I~vwDl~t~~~i~~~~~~~~i~sl~~sp~g~~llags~dg~I~iwDl~s~~~~~~l~~h~~-~V~sl~~spdg~~Lasgs 743 (837)
|.+||+.+++.+..+.+..-|.++.|+.+|..+++++.|..|+|||.++++.+..-.+|.+ .-..+.|-.++.++.+|-
T Consensus 156 v~iWnv~tgeali~l~hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~g~i~tTGf 235 (472)
T KOG0303|consen 156 VSIWNVGTGEALITLDHPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLASGKIFTTGF 235 (472)
T ss_pred EEEEeccCCceeeecCCCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeecccccCCCcceeEEeccCceeeecc
Confidence 9999999999999999999999999999999999999999999999999999988877876 344566778888666664
Q ss_pred ----CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEE-cCCeEEEEECCCCcEE----EeccCCCCeeE
Q 003236 744 ----DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIG-CYETLELWNMTENKTL----TLSAHDKLVSS 814 (837)
Q Consensus 744 ----Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fspdg~~L~sgs-~dg~I~IwDl~s~~~~----~l~~h~~~V~s 814 (837)
+..+-+||-.+.+..-.+.++.. .+.|.--.|.+|...|+.++ .|+.|+.|.+...... .......+-..
T Consensus 236 sr~seRq~aLwdp~nl~eP~~~~elDt-SnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d~P~~hyln~f~S~epQRG 314 (472)
T KOG0303|consen 236 SRMSERQIALWDPNNLEEPIALQELDT-SNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNEPPFVHYLNTFSSKEPQRG 314 (472)
T ss_pred ccccccceeccCcccccCcceeEEecc-CCceEEeeecCCCCEEEEEecCCcceEEEEecCCCceeEEecccccCCcccc
Confidence 66899999888765545555553 55677778899988877665 5789999999887743 22233444555
Q ss_pred EEEeCC
Q 003236 815 LAASTV 820 (837)
Q Consensus 815 la~spd 820 (837)
+.|-|.
T Consensus 315 ~g~mPK 320 (472)
T KOG0303|consen 315 MGFMPK 320 (472)
T ss_pred cccccc
Confidence 555554
|
|
| >PRK11028 6-phosphogluconolactonase; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=8.5e-17 Score=177.88 Aligned_cols=266 Identities=10% Similarity=0.183 Sum_probs=184.4
Q ss_pred EEEEECCCcEEEEeCCC-Ce--EEEEeccCCCCeEEEEEcCCCCEEEEEe-CCCeEEEEEcCC-CCceeEEeeccccceE
Q 003236 570 LATGGHDKKAVLWCTES-FT--VKSTLEEHTQWITDVRFSPSLSRLATSS-ADRTVRVWDTEN-PDYSLRTFTGHSTTVM 644 (837)
Q Consensus 570 Lasgs~Dg~I~VWd~~t-~~--~~~~l~~h~~~I~~l~fspdg~~Latgs-~Dg~I~IWDl~~-~~~~~~~~~~h~~~V~ 644 (837)
+++...|+.|.+|++.+ ++ .+..+. +.+....++++|++++|++++ .++.|.+|++.. +...............
T Consensus 5 y~~~~~~~~I~~~~~~~~g~l~~~~~~~-~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~~~~~p~ 83 (330)
T PRK11028 5 YIASPESQQIHVWNLNHEGALTLLQVVD-VPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESPLPGSPT 83 (330)
T ss_pred EEEcCCCCCEEEEEECCCCceeeeeEEe-cCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeecCCCCce
Confidence 34446789999999964 33 445554 346678899999999987765 478999999973 2221111112334567
Q ss_pred EEEEcCCCCeEEEEEeCCCcEEEEECCC-Ce---eeeEEecCCCeeEEEEecCCCEEEEEEc-CCeEEEEECCCCeEEE-
Q 003236 645 SLDFHPSKEDLLCSCDNNSEIRYWSINN-GS---CAGVFKCQSGATQMRFQPRLGRILAAAI-ENYISILDVETQVCRL- 718 (837)
Q Consensus 645 sl~fspdg~~llasgs~Dg~I~vwDl~t-~~---~i~~~~~~~~i~sl~~sp~g~~llags~-dg~I~iwDl~s~~~~~- 718 (837)
.++|+|+++.++++...++.|.+|++.+ +. .+..+.......+++++|+++++++++. ++.|.+||+++...+.
T Consensus 84 ~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~ 163 (330)
T PRK11028 84 HISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIEGLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVA 163 (330)
T ss_pred EEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeeccCCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccc
Confidence 8999999998887777789999999974 32 2233333345778899999999977765 5899999998632221
Q ss_pred ------EEcCCCCCEEEEEEcCCCCEEEEEe--CCeEEEEEcCCC-CCceeEEEeecC------CCceEEEEEeCCCCEE
Q 003236 719 ------KLQGHKNQVHSVCWNTSGEYLASVS--DELVRVWSIGSG-SKGECIHELSCT------GNKFHSCVFHPTFPSL 783 (837)
Q Consensus 719 ------~l~~h~~~V~sl~~spdg~~Lasgs--Dg~I~IwDl~s~-~~~~~i~~~~~~------~~~I~sv~fspdg~~L 783 (837)
.+. .......+.|+|++++++++. ++.|.+|++... ...+.+..+... ......+.++|+++++
T Consensus 164 ~~~~~~~~~-~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~l 242 (330)
T PRK11028 164 QEPAEVTTV-EGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHL 242 (330)
T ss_pred cCCCceecC-CCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEE
Confidence 111 234567899999999998877 789999999742 122334333221 1123468899999999
Q ss_pred EEEEc-CCeEEEEECCCCc-EEEeccC---CCCeeEEEEeCCCCEEEEEEC-CCcEEEeC
Q 003236 784 LVIGC-YETLELWNMTENK-TLTLSAH---DKLVSSLAASTVNGMVASASH-DKCVKIWK 837 (837)
Q Consensus 784 ~sgs~-dg~I~IwDl~s~~-~~~l~~h---~~~V~sla~spdg~~LaSgs~-DG~I~IWd 837 (837)
+++.. ++.|.+|++.... ...+..+ ......+.|+|+|++|++++. +++|.||+
T Consensus 243 yv~~~~~~~I~v~~i~~~~~~~~~~~~~~~~~~p~~~~~~~dg~~l~va~~~~~~v~v~~ 302 (330)
T PRK11028 243 YACDRTASLISVFSVSEDGSVLSFEGHQPTETQPRGFNIDHSGKYLIAAGQKSHHISVYE 302 (330)
T ss_pred EEecCCCCeEEEEEEeCCCCeEEEeEEEeccccCCceEECCCCCEEEEEEccCCcEEEEE
Confidence 99865 5799999985432 2222222 235668999999999998775 89999984
|
|
| >PRK11028 6-phosphogluconolactonase; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=5.1e-16 Score=171.65 Aligned_cols=288 Identities=11% Similarity=0.117 Sum_probs=193.5
Q ss_pred EcccCCCceEEeecCCCCCCCCccccccccCCCeeeeEEEEecCCCCCeEEEEEcCCCCEEEEEE-CCCcEEEEeCC-CC
Q 003236 510 DDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGG-HDKKAVLWCTE-SF 587 (837)
Q Consensus 510 ~~Gs~D~~v~~w~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~H~~~V~sl~fSpdg~~Lasgs-~Dg~I~VWd~~-t~ 587 (837)
++...++.|.+|..... ..+..+..+. +.+....++++|++++|++++ .++.|.+|++. ++
T Consensus 6 ~~~~~~~~I~~~~~~~~----------------g~l~~~~~~~-~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g 68 (330)
T PRK11028 6 IASPESQQIHVWNLNHE----------------GALTLLQVVD-VPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDG 68 (330)
T ss_pred EEcCCCCCEEEEEECCC----------------CceeeeeEEe-cCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCC
Confidence 33456788888855321 1223344443 234577899999999987765 47889999986 33
Q ss_pred eE--EEEeccCCCCeEEEEEcCCCCEEEEEeC-CCeEEEEEcCCCCc---eeEEeeccccceEEEEEcCCCCeEEEEEeC
Q 003236 588 TV--KSTLEEHTQWITDVRFSPSLSRLATSSA-DRTVRVWDTENPDY---SLRTFTGHSTTVMSLDFHPSKEDLLCSCDN 661 (837)
Q Consensus 588 ~~--~~~l~~h~~~I~~l~fspdg~~Latgs~-Dg~I~IWDl~~~~~---~~~~~~~h~~~V~sl~fspdg~~llasgs~ 661 (837)
+. +.... ..+....++|+|++++|++++. ++.|.+|++++... .+..+. +.....+++++|+++.++++...
T Consensus 69 ~l~~~~~~~-~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~-~~~~~~~~~~~p~g~~l~v~~~~ 146 (330)
T PRK11028 69 ALTFAAESP-LPGSPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIE-GLEGCHSANIDPDNRTLWVPCLK 146 (330)
T ss_pred ceEEeeeec-CCCCceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeecc-CCCcccEeEeCCCCCEEEEeeCC
Confidence 32 22222 3345678999999999988875 88999999975332 122222 33456788999999988888888
Q ss_pred CCcEEEEECCCCeeee-------EEecCCCeeEEEEecCCCEEEEEEc-CCeEEEEECCC--C--eEEEEEcCC------
Q 003236 662 NSEIRYWSINNGSCAG-------VFKCQSGATQMRFQPRLGRILAAAI-ENYISILDVET--Q--VCRLKLQGH------ 723 (837)
Q Consensus 662 Dg~I~vwDl~t~~~i~-------~~~~~~~i~sl~~sp~g~~llags~-dg~I~iwDl~s--~--~~~~~l~~h------ 723 (837)
++.|.+||+.+...+. ..........+.|+|++++++++.. ++.|.+||++. + +.+..+..+
T Consensus 147 ~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~ 226 (330)
T PRK11028 147 EDRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSD 226 (330)
T ss_pred CCEEEEEEECCCCcccccCCCceecCCCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCC
Confidence 8999999998633221 1223456778999999999988887 89999999973 2 333333322
Q ss_pred CCCEEEEEEcCCCCEEEEEe--CCeEEEEEcCCCC-CceeEEEeecCCCceEEEEEeCCCCEEEEEEc-CCeEEEEECC-
Q 003236 724 KNQVHSVCWNTSGEYLASVS--DELVRVWSIGSGS-KGECIHELSCTGNKFHSCVFHPTFPSLLVIGC-YETLELWNMT- 798 (837)
Q Consensus 724 ~~~V~sl~~spdg~~Lasgs--Dg~I~IwDl~s~~-~~~~i~~~~~~~~~I~sv~fspdg~~L~sgs~-dg~I~IwDl~- 798 (837)
......+.|+|++++|+++. ++.|.+|++.... ....+..... ......+.|+|+|++|+++.. +++|.+|+++
T Consensus 227 ~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~-~~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~~ 305 (330)
T PRK11028 227 TRWAADIHITPDGRHLYACDRTASLISVFSVSEDGSVLSFEGHQPT-ETQPRGFNIDHSGKYLIAAGQKSHHISVYEIDG 305 (330)
T ss_pred CccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeEEEeEEEec-cccCCceEECCCCCEEEEEEccCCcEEEEEEcC
Confidence 12334688999999999886 6799999996543 1223333332 234567899999999998886 7799999874
Q ss_pred -CCcEEE--eccCCCCeeEEEE
Q 003236 799 -ENKTLT--LSAHDKLVSSLAA 817 (837)
Q Consensus 799 -s~~~~~--l~~h~~~V~sla~ 817 (837)
++.... .........+++|
T Consensus 306 ~~g~l~~~~~~~~g~~P~~~~~ 327 (330)
T PRK11028 306 ETGLLTELGRYAVGQGPMWVSV 327 (330)
T ss_pred CCCcEEEccccccCCCceEEEE
Confidence 444331 1122344555554
|
|
| >KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.78 E-value=2.8e-18 Score=187.60 Aligned_cols=251 Identities=19% Similarity=0.285 Sum_probs=196.5
Q ss_pred EEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCC--------CCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCC
Q 003236 548 FQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTE--------SFTVKSTLEEHTQWITDVRFSPSLSRLATSSADR 619 (837)
Q Consensus 548 ~~~l~~H~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~--------t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg 619 (837)
-.++..|.+.|+.+.|.+....|++++.||+|.+|++. ..+.+.+|.+|.++|.|+++.+++..+++|+.||
T Consensus 287 k~tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg 366 (577)
T KOG0642|consen 287 KFTLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDG 366 (577)
T ss_pred eeeeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccCc
Confidence 34788999999999999999999999999999999982 2467789999999999999999999999999999
Q ss_pred eEEEEEcCC---------CCceeEEeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeeEEec---CCCeeE
Q 003236 620 TVRVWDTEN---------PDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC---QSGATQ 687 (837)
Q Consensus 620 ~I~IWDl~~---------~~~~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~---~~~i~s 687 (837)
+|+.|++.. .......+.||.+.|+.++++..... |++|+.||+|+.|+...... .+|.. .+-..+
T Consensus 367 ~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~-Llscs~DgTvr~w~~~~~~~-~~f~~~~e~g~Pls 444 (577)
T KOG0642|consen 367 TIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDR-LLSCSSDGTVRLWEPTEESP-CTFGEPKEHGYPLS 444 (577)
T ss_pred eeeeeccCCCCCcccccCcchhccceeccccceeeeeecccccc-eeeecCCceEEeeccCCcCc-cccCCccccCCcce
Confidence 999996542 11334678899999999999998665 56999999999999987665 33322 222344
Q ss_pred EEEecCC-CEEEEEEcCCeEEEEECCCCeEEEEEcC-------CCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCc
Q 003236 688 MRFQPRL-GRILAAAIENYISILDVETQVCRLKLQG-------HKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKG 758 (837)
Q Consensus 688 l~~sp~g-~~llags~dg~I~iwDl~s~~~~~~l~~-------h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~ 758 (837)
+.+.... ...++...-+.-.+++.+....+..+.. ....+.-+.++|...+.+++. |+.|+++|..++
T Consensus 445 vd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~--- 521 (577)
T KOG0642|consen 445 VDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTG--- 521 (577)
T ss_pred EeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceeccccccc---
Confidence 5544332 2233333334444455554443333322 123567788999999988888 999999999988
Q ss_pred eeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE
Q 003236 759 ECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL 803 (837)
Q Consensus 759 ~~i~~~~~~~~~I~sv~fspdg~~L~sgs~dg~I~IwDl~s~~~~ 803 (837)
..++....|...++++++.|+|.+|++++.|+.|++|.+....++
T Consensus 522 ~~l~s~~a~~~svtslai~~ng~~l~s~s~d~sv~l~kld~k~~~ 566 (577)
T KOG0642|consen 522 KILHSMVAHKDSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVKTCV 566 (577)
T ss_pred ccchheeeccceecceeecCCCceEEeecCCceeehhhccchhee
Confidence 788888899999999999999999999999999999998777665
|
|
| >KOG1188 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.77 E-value=1e-17 Score=173.60 Aligned_cols=266 Identities=16% Similarity=0.297 Sum_probs=192.1
Q ss_pred CEEEEEECCCcEEEEeCCCCeEEEEeccCCCCeEEEEEcC--CCCEEEEEeCCCeEEEEEcCCCCc-eeEEeeccc-cce
Q 003236 568 KLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSP--SLSRLATSSADRTVRVWDTENPDY-SLRTFTGHS-TTV 643 (837)
Q Consensus 568 ~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~I~~l~fsp--dg~~Latgs~Dg~I~IWDl~~~~~-~~~~~~~h~-~~V 643 (837)
..+|++...|.|++||..++..+..++++...++.++|.. ....+.+|+.||+|++||++.... ....+..+. .+.
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f 120 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPF 120 (376)
T ss_pred eeEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcc
Confidence 5688888999999999999999999999999999999987 467899999999999999997544 334455555 456
Q ss_pred EEEEEcCCCCeEEEEEe----CCCcEEEEECCCCee-eeEEe--cCCCeeEEEEecCC-CEEEEEEcCCeEEEEECCCCe
Q 003236 644 MSLDFHPSKEDLLCSCD----NNSEIRYWSINNGSC-AGVFK--CQSGATQMRFQPRL-GRILAAAIENYISILDVETQV 715 (837)
Q Consensus 644 ~sl~fspdg~~llasgs----~Dg~I~vwDl~t~~~-i~~~~--~~~~i~sl~~sp~g-~~llags~dg~I~iwDl~s~~ 715 (837)
.|++..-. ..++++|. .+-.|.+||++..+. +..+. +...|++++|+|.. +.|++|+.||.|.+||++...
T Consensus 121 ~~ld~nck-~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~ 199 (376)
T KOG1188|consen 121 ICLDLNCK-KNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDN 199 (376)
T ss_pred eEeeccCc-CCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCCc
Confidence 66666544 44776664 366899999998765 55443 57789999999954 668889999999999998642
Q ss_pred ---EEEEEcCCCCCEEEEEEcCCC--CEEEEEeCCeEEEEEcCCCCCceeEEEeecC------------CCceEEEEEeC
Q 003236 716 ---CRLKLQGHKNQVHSVCWNTSG--EYLASVSDELVRVWSIGSGSKGECIHELSCT------------GNKFHSCVFHP 778 (837)
Q Consensus 716 ---~~~~l~~h~~~V~sl~~spdg--~~LasgsDg~I~IwDl~s~~~~~~i~~~~~~------------~~~I~sv~fsp 778 (837)
.+.....|...|.++.|..++ ++......++..+|++..+.. ...+... ...+..+....
T Consensus 200 EeDaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~---~~~~~~~~~~~~d~r~~~~~dY~I~~~~~~ 276 (376)
T KOG1188|consen 200 EEDALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSE---ETWLENPDVSADDLRKEDNCDYVINEHSPG 276 (376)
T ss_pred chhhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCCh---hhcccCccchhhhHHhhhhhhheeecccCC
Confidence 222233477889999999887 544444499999999988742 2111111 11222222233
Q ss_pred CCCEEEEEEc-CCeEEEEEC---CCCcEE----Eec-cCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 003236 779 TFPSLLVIGC-YETLELWNM---TENKTL----TLS-AHDKLVSSLAASTVNGMVASASHDKCVKIWK 837 (837)
Q Consensus 779 dg~~L~sgs~-dg~I~IwDl---~s~~~~----~l~-~h~~~V~sla~spdg~~LaSgs~DG~I~IWd 837 (837)
+...+++++. -+...++-+ .++... .+. +|...|.++.|...+.+++||+.||.|.+|+
T Consensus 277 ~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~~~eiVR~i~~~~~~~~l~TGGEDG~l~~Wk 344 (376)
T KOG1188|consen 277 DKDTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQGGHEEIVRDILFDVKNDVLYTGGEDGLLQAWK 344 (376)
T ss_pred CcceEEEeccccCceeEEEeeecccccccCccccccCCcHHHHHHHhhhcccceeeccCCCceEEEEe
Confidence 4455555554 455555433 333322 344 4778899999998999999999999999995
|
|
| >KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.2e-18 Score=196.34 Aligned_cols=274 Identities=18% Similarity=0.286 Sum_probs=218.2
Q ss_pred EEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEc
Q 003236 547 EFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDT 626 (837)
Q Consensus 547 ~~~~l~~H~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl 626 (837)
.++.|.+|.+.|+|+.|...|.++++|+.|..|+||..++..+...+.+|.+.|+.++.+.+..+++++|.|..|++|.+
T Consensus 182 ~ikrLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl 261 (1113)
T KOG0644|consen 182 NIKRLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRL 261 (1113)
T ss_pred HHHHHHhhhhheeeeeeccccceEeecCccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhcccCceEEEEec
Confidence 45668899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCceeEEeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeee-----EEecCCCeeEEEEecCCCEEEEEE
Q 003236 627 ENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAG-----VFKCQSGATQMRFQPRLGRILAAA 701 (837)
Q Consensus 627 ~~~~~~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~-----~~~~~~~i~sl~~sp~g~~llags 701 (837)
.++. ++..+.+|++.|++|+|+|-- +.+.||++++||.+-...+. .+.....+.++.|...+..+++++
T Consensus 262 ~~~~-pvsvLrghtgavtaiafsP~~-----sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~Tgs 335 (1113)
T KOG0644|consen 262 PDGA-PVSVLRGHTGAVTAIAFSPRA-----SSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFENNGDRFLTGS 335 (1113)
T ss_pred CCCc-hHHHHhccccceeeeccCccc-----cCCCCCceEeccccccccccCCCCCCcccccceeeeecccccccccccc
Confidence 9865 588999999999999999863 67789999999998211111 122234567777888888899999
Q ss_pred cCCeEEEEECCCCeEEEEEcCCCCCEEEEEEcCCCC-EEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCC
Q 003236 702 IENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGE-YLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPT 779 (837)
Q Consensus 702 ~dg~I~iwDl~s~~~~~~l~~h~~~V~sl~~spdg~-~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fspd 779 (837)
.|+.-..|...... .+...+.-+.++.+-. +.+++- +..+++|++.++ ...+.+.+|...+..+.++|-
T Consensus 336 ~d~ea~n~e~~~l~------~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g---~l~H~l~ghsd~~yvLd~Hpf 406 (1113)
T KOG0644|consen 336 RDGEARNHEFEQLA------WRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTG---QLLHNLMGHSDEVYVLDVHPF 406 (1113)
T ss_pred CCcccccchhhHhh------hhccceEEEeccccccccceeeeeeeEeeeeecccc---hhhhhhcccccceeeeeecCC
Confidence 99887777654321 1222222233332322 333333 789999999988 677888899999999999998
Q ss_pred CCEEE-EEEcCCeEEEEECCCCcEE--EeccCCCCeeEEEEeCCCCEEEEEECCCcEEEe
Q 003236 780 FPSLL-VIGCYETLELWNMTENKTL--TLSAHDKLVSSLAASTVNGMVASASHDKCVKIW 836 (837)
Q Consensus 780 g~~L~-sgs~dg~I~IwDl~s~~~~--~l~~h~~~V~sla~spdg~~LaSgs~DG~I~IW 836 (837)
...++ .++.||...|||+-.+..+ ...+ ...+...+||+||..++...+-|.++|.
T Consensus 407 n~ri~msag~dgst~iwdi~eg~pik~y~~g-h~kl~d~kFSqdgts~~lsd~hgql~i~ 465 (1113)
T KOG0644|consen 407 NPRIAMSAGYDGSTIIWDIWEGIPIKHYFIG-HGKLVDGKFSQDGTSIALSDDHGQLYIL 465 (1113)
T ss_pred CcHhhhhccCCCceEeeecccCCcceeeecc-cceeeccccCCCCceEecCCCCCceEEe
Confidence 76554 6788999999999988776 3345 4566778999999998888777888774
|
|
| >KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.76 E-value=3.2e-16 Score=160.40 Aligned_cols=250 Identities=21% Similarity=0.365 Sum_probs=187.0
Q ss_pred ccccCCCeEEcccCCCceEEeecCCCCCCCCccccccccCCCeeeeEEEEecCCCCCeEEEEEcC--CCCEEEEEECCCc
Q 003236 501 QLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSP--DGKLLATGGHDKK 578 (837)
Q Consensus 501 ~l~~~~~~v~~Gs~D~~v~~w~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~H~~~V~sl~fSp--dg~~Lasgs~Dg~ 578 (837)
.++...+.+++++.|..+++|.+.++ ..++..-...+.|.+.|..|.|.+ -|..+|+++.|++
T Consensus 20 s~D~~GRRmAtCSsDq~vkI~d~~~~---------------s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drt 84 (361)
T KOG2445|consen 20 SFDFYGRRMATCSSDQTVKIWDSTSD---------------SGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRT 84 (361)
T ss_pred eecccCceeeeccCCCcEEEEeccCC---------------CCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCc
Confidence 35667789999999999999986433 234566677889999999999976 5889999999999
Q ss_pred EEEEeCC---------CCeEEEEeccCCCCeEEEEEcCC--CCEEEEEeCCCeEEEEEcCCCCce------------eEE
Q 003236 579 AVLWCTE---------SFTVKSTLEEHTQWITDVRFSPS--LSRLATSSADRTVRVWDTENPDYS------------LRT 635 (837)
Q Consensus 579 I~VWd~~---------t~~~~~~l~~h~~~I~~l~fspd--g~~Latgs~Dg~I~IWDl~~~~~~------------~~~ 635 (837)
|.||.-. ......++......|++|+|.|. |-.||+++.||+||||+.-+.-.. +..
T Consensus 85 v~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~p 164 (361)
T KOG2445|consen 85 VSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDP 164 (361)
T ss_pred eeeeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCC
Confidence 9999641 12344567777889999999994 788999999999999997653211 111
Q ss_pred eeccccceEEEEEcCCC--CeEEEEEeCC-----CcEEEEECCCC--eeeeEE---ecCCCeeEEEEecCCC----EEEE
Q 003236 636 FTGHSTTVMSLDFHPSK--EDLLCSCDNN-----SEIRYWSINNG--SCAGVF---KCQSGATQMRFQPRLG----RILA 699 (837)
Q Consensus 636 ~~~h~~~V~sl~fspdg--~~llasgs~D-----g~I~vwDl~t~--~~i~~~---~~~~~i~sl~~sp~g~----~lla 699 (837)
...+.....|+.|+|.. ..+|+.|+.+ +.++||....+ +....- .+...|+.++|.|.-+ .|++
T Consensus 165 p~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAv 244 (361)
T KOG2445|consen 165 PGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAV 244 (361)
T ss_pred cccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceeeEEE
Confidence 22466778899998742 3466666644 47888876543 222222 2467899999999643 4778
Q ss_pred EEcCCeEEEEECCCC--------------------eEEEEEcCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCc
Q 003236 700 AAIENYISILDVETQ--------------------VCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKG 758 (837)
Q Consensus 700 gs~dg~I~iwDl~s~--------------------~~~~~l~~h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~ 758 (837)
++.|| |+||.++.. +.+..+.+|.+.|..+.|+-.|..|++.+ ||+||+|...-....
T Consensus 245 A~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~VRLWkany~n~~ 323 (361)
T KOG2445|consen 245 ATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGDDGCVRLWKANYNNLW 323 (361)
T ss_pred eecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecCCCceeeehhhhhhhhh
Confidence 88899 999998731 23455778999999999999999999988 999999987655555
Q ss_pred eeEEEeec
Q 003236 759 ECIHELSC 766 (837)
Q Consensus 759 ~~i~~~~~ 766 (837)
+|+..+..
T Consensus 324 kC~sv~~~ 331 (361)
T KOG2445|consen 324 KCTSVLKA 331 (361)
T ss_pred eeeeEEec
Confidence 56655554
|
|
| >KOG1334 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.75 E-value=5.8e-18 Score=182.04 Aligned_cols=292 Identities=20% Similarity=0.304 Sum_probs=228.4
Q ss_pred eeEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEe-ccCCCCeEEEEEcC--CCCEEEEEeCCCeE
Q 003236 545 FTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTL-EEHTQWITDVRFSP--SLSRLATSSADRTV 621 (837)
Q Consensus 545 ~~~~~~l~~H~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l-~~h~~~I~~l~fsp--dg~~Latgs~Dg~I 621 (837)
+.....|..|.+.|..|.|...|..|++|+.|..|.+||...++.+..+ .+|...|.--.|.| +...|++++.||.|
T Consensus 132 ~~l~~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqv 211 (559)
T KOG1334|consen 132 LRLQKKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQV 211 (559)
T ss_pred hhhhhcccCCCCccceeeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCce
Confidence 3445668899999999999999999999999999999999988877666 57999998888988 45679999999999
Q ss_pred EEEEcCCCCce--eEEeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeeEEec----CC---CeeEEEEec
Q 003236 622 RVWDTENPDYS--LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC----QS---GATQMRFQP 692 (837)
Q Consensus 622 ~IWDl~~~~~~--~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~----~~---~i~sl~~sp 692 (837)
++=.+....++ ...+..|.+.|..++..|+..+-|.+|+.|+.+.-+|++.+.....+.+ .. ....++..|
T Consensus 212 r~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P 291 (559)
T KOG1334|consen 212 RVSEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDP 291 (559)
T ss_pred eeeeeccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCC
Confidence 99887655443 3556779999999999999999999999999999999998766555443 22 467788888
Q ss_pred CCC-EEEEEEcCCeEEEEECCCCeE------EEEEcC------CCCCEEEEEEcCC-CCEEEEEeCCeEEEEEcCCCCC-
Q 003236 693 RLG-RILAAAIENYISILDVETQVC------RLKLQG------HKNQVHSVCWNTS-GEYLASVSDELVRVWSIGSGSK- 757 (837)
Q Consensus 693 ~g~-~llags~dg~I~iwDl~s~~~------~~~l~~------h~~~V~sl~~spd-g~~LasgsDg~I~IwDl~s~~~- 757 (837)
... .+++++.|-.+++||.+.-.. +..+.. ..-.|+|++|+.+ +.+|++-.|-.|++|.-..+.-
T Consensus 292 ~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~ 371 (559)
T KOG1334|consen 292 RNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDGS 371 (559)
T ss_pred CCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEeccccccCC
Confidence 765 678888999999999875321 222222 2347999999965 4566666698999995432211
Q ss_pred -c-------eeEE-EeecCCCc--eEEEE-EeCCCCEEEEEEcCCeEEEEECCCCcEEE-eccCCCCeeEEEEeCCCCEE
Q 003236 758 -G-------ECIH-ELSCTGNK--FHSCV-FHPTFPSLLVIGCYETLELWNMTENKTLT-LSAHDKLVSSLAASTVNGMV 824 (837)
Q Consensus 758 -~-------~~i~-~~~~~~~~--I~sv~-fspdg~~L~sgs~dg~I~IwDl~s~~~~~-l~~h~~~V~sla~spdg~~L 824 (837)
. ..+. .+++|.+. |..+- |-|...|+++|+.-|.|.||+-++++++. +.+-...|+||.-+|.-.+|
T Consensus 372 ~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~~MegDr~VVNCLEpHP~~PvL 451 (559)
T KOG1334|consen 372 EPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIRFMEGDRHVVNCLEPHPHLPVL 451 (559)
T ss_pred CCCCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecchhHHHHHhhcccceEeccCCCCCCchh
Confidence 0 1122 25566543 55554 56888999999999999999999999884 34444589999999999999
Q ss_pred EEEECCCcEEEe
Q 003236 825 ASASHDKCVKIW 836 (837)
Q Consensus 825 aSgs~DG~I~IW 836 (837)
|+++-|.-|+||
T Consensus 452 AsSGid~DVKIW 463 (559)
T KOG1334|consen 452 ASSGIDHDVKIW 463 (559)
T ss_pred hccCCccceeee
Confidence 999999999999
|
|
| >KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.5e-16 Score=183.61 Aligned_cols=282 Identities=16% Similarity=0.229 Sum_probs=210.0
Q ss_pred CCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEeccC---CCCeEEEEEcC--CCCEEEEEeCCCeEEEEEcC
Q 003236 553 ASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEH---TQWITDVRFSP--SLSRLATSSADRTVRVWDTE 627 (837)
Q Consensus 553 ~H~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h---~~~I~~l~fsp--dg~~Latgs~Dg~I~IWDl~ 627 (837)
+....-..+.|+|=...++++...-.|+|||.+.++....|..+ ...|+.+++-. |..++++|+.||.|+||+--
T Consensus 1062 ~n~~~pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y 1141 (1387)
T KOG1517|consen 1062 GNNQPPKTLKFHPFEPQIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDY 1141 (1387)
T ss_pred cCCCCCceeeecCCCceeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEeccc
Confidence 33445667889998888999987789999999999998777643 35688998876 56789999999999999743
Q ss_pred CCC----ceeEEeec-------cccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeeEEecCC--CeeEEEEe-cC
Q 003236 628 NPD----YSLRTFTG-------HSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQS--GATQMRFQ-PR 693 (837)
Q Consensus 628 ~~~----~~~~~~~~-------h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~~~--~i~sl~~s-p~ 693 (837)
... ..+..+.+ ..+.-.-++|.....+++++|+ -..|+|||.....++..+.... .++++.-+ ..
T Consensus 1142 ~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd-~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~ 1220 (1387)
T KOG1517|consen 1142 ADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGD-VRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVH 1220 (1387)
T ss_pred ccccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCC-eeEEEEEecccceeEeecccCCCccceeecccccC
Confidence 221 11222221 1122244677777777776665 7899999999988887776543 35555443 34
Q ss_pred CCEEEEEEcCCeEEEEECCCC---eEEEEEcCCCCC--EEEEEEcCCCCE-EEEEe-CCeEEEEEcCCCCCceeEEEeec
Q 003236 694 LGRILAAAIENYISILDVETQ---VCRLKLQGHKNQ--VHSVCWNTSGEY-LASVS-DELVRVWSIGSGSKGECIHELSC 766 (837)
Q Consensus 694 g~~llags~dg~I~iwDl~s~---~~~~~l~~h~~~--V~sl~~spdg~~-Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~ 766 (837)
|+.|++|..||.|++||.+.. ..+...+.|... |..+.+.+.|.- |++|+ ||.|++||++.... .....+..
T Consensus 1221 gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~-e~~~~iv~ 1299 (1387)
T KOG1517|consen 1221 GNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSK-ETFLTIVA 1299 (1387)
T ss_pred CceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcc-cccceeee
Confidence 688999999999999999864 356677788887 999999886654 78888 99999999998532 22222222
Q ss_pred C---CCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEEEecc-------CCCCeeEEEEeCCCCEEEEEECCCcEEEe
Q 003236 767 T---GNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSA-------HDKLVSSLAASTVNGMVASASHDKCVKIW 836 (837)
Q Consensus 767 ~---~~~I~sv~fspdg~~L~sgs~dg~I~IwDl~s~~~~~l~~-------h~~~V~sla~spdg~~LaSgs~DG~I~IW 836 (837)
| ++..+++..++..+.|++|+. +.|+||++.......+.. ..+.+.|++|+|..-+||+|+.|.+|.||
T Consensus 1300 ~~~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~G~~l~~~k~n~~F~~q~~gs~scL~FHP~~~llAaG~~Ds~V~iY 1378 (1387)
T KOG1517|consen 1300 HWEYGSALTALTVHEHAPIIASGSA-QLIKIYSLSGEQLNIIKYNPGFMGQRIGSVSCLAFHPHRLLLAAGSADSTVSIY 1378 (1387)
T ss_pred ccccCccceeeeeccCCCeeeecCc-ceEEEEecChhhhcccccCcccccCcCCCcceeeecchhHhhhhccCCceEEEe
Confidence 2 335899999999999988888 999999998766543322 24568999999999999999999999998
Q ss_pred C
Q 003236 837 K 837 (837)
Q Consensus 837 d 837 (837)
.
T Consensus 1379 s 1379 (1387)
T KOG1517|consen 1379 S 1379 (1387)
T ss_pred e
Confidence 3
|
|
| >KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.74 E-value=4.8e-16 Score=159.91 Aligned_cols=273 Identities=18% Similarity=0.252 Sum_probs=199.6
Q ss_pred CeEEcccCCCceEEeecCCCCCCCCccccccccCCCeeeeEEEEec-CCCCCeEEEEEc-------CCCCEEEEEECCCc
Q 003236 507 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIP-ASTSKVESCHFS-------PDGKLLATGGHDKK 578 (837)
Q Consensus 507 ~~v~~Gs~D~~v~~w~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~-~H~~~V~sl~fS-------pdg~~Lasgs~Dg~ 578 (837)
..+.+-+.|..+.+|..+.+.-..+. .-...+....+++ .....|...+|- |+..++|+.+.|.-
T Consensus 62 SciL~~sedn~l~~~nlP~dlys~~~-------~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ssr~~P 134 (406)
T KOG2919|consen 62 SCILSLSEDNCLNCWNLPFDLYSKKA-------DGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVSSRDQP 134 (406)
T ss_pred ceEEeecccCeeeEEecChhhcccCC-------CCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeeccccCc
Confidence 34556677888899965544222111 0111111122222 123457777775 67789999999999
Q ss_pred EEEEeCCCCeEEEEecc--CCC---CeEEEEEcCCCCEEEEEeCCCeEEEEEcCCC-Cc-eeEEe-----eccccceEEE
Q 003236 579 AVLWCTESFTVKSTLEE--HTQ---WITDVRFSPSLSRLATSSADRTVRVWDTENP-DY-SLRTF-----TGHSTTVMSL 646 (837)
Q Consensus 579 I~VWd~~t~~~~~~l~~--h~~---~I~~l~fspdg~~Latgs~Dg~I~IWDl~~~-~~-~~~~~-----~~h~~~V~sl 646 (837)
|++||.-+++....+.. |-+ ...+++|+|||..|+.| ....|+|||+... .. .+... .+..+.|.|+
T Consensus 135 Ih~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaG-ykrcirvFdt~RpGr~c~vy~t~~~~k~gq~giisc~ 213 (406)
T KOG2919|consen 135 IHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAG-YKRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGIISCF 213 (406)
T ss_pred eeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeec-ccceEEEeeccCCCCCCcchhhhhcccccccceeeee
Confidence 99999999998877753 333 34689999999999877 6779999999433 21 22222 2346789999
Q ss_pred EEcCCCCeEEEEEeCCCcEEEEECCCCeeeeEEe-cCCCeeEEEEecCCCEEEEEEc-CCeEEEEECCCC-eEEEEEcCC
Q 003236 647 DFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK-CQSGATQMRFQPRLGRILAAAI-ENYISILDVETQ-VCRLKLQGH 723 (837)
Q Consensus 647 ~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~-~~~~i~sl~~sp~g~~llags~-dg~I~iwDl~s~-~~~~~l~~h 723 (837)
+|+|.....++.++....+-||.-....++..+. +.++|+.++|.++|+.|++|+. +..|..||++.. .++..+..|
T Consensus 214 a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~pv~~L~rh 293 (406)
T KOG2919|consen 214 AFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSRDPVYALERH 293 (406)
T ss_pred eccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeehhccchhhhhhhh
Confidence 9999988899999988899999888877776665 4678999999999999999987 679999999864 566777766
Q ss_pred CC-CEEE--EEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcC
Q 003236 724 KN-QVHS--VCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCY 789 (837)
Q Consensus 724 ~~-~V~s--l~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fspdg~~L~sgs~d 789 (837)
.. .--. ....|++++|++|+ ||.|++||+.... ..+..+..+...+..++++|--..+++++..
T Consensus 294 v~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~g--n~~sv~~~~sd~vNgvslnP~mpilatssGq 361 (406)
T KOG2919|consen 294 VGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLG--NEVSVTGNYSDTVNGVSLNPIMPILATSSGQ 361 (406)
T ss_pred ccCccceEEEecCCCCceeeccCCCccEEEEecCCCC--CcccccccccccccceecCcccceeeeccCc
Confidence 55 2223 45568999999998 9999999998742 4566677778889999999997766666554
|
|
| >KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.73 E-value=4.1e-17 Score=178.62 Aligned_cols=254 Identities=19% Similarity=0.195 Sum_probs=191.5
Q ss_pred CCccccCCCeEEcccCCCceEEeecCCCCCCCCccccccccCCCeeeeEEEEecCCCCCeEEEEEcCCCCEEEEEECCCc
Q 003236 499 PNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKK 578 (837)
Q Consensus 499 ~~~l~~~~~~v~~Gs~D~~v~~w~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~H~~~V~sl~fSpdg~~Lasgs~Dg~ 578 (837)
...+...+..+++++.|+.+++|..... .......+..+.+|++|.++|.|+++.+++..+++|+.||+
T Consensus 299 ~l~~~~sep~lit~sed~~lk~WnLqk~-----------~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~ 367 (577)
T KOG0642|consen 299 ALAFHPSEPVLITASEDGTLKLWNLQKA-----------KKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGT 367 (577)
T ss_pred hhhcCCCCCeEEEeccccchhhhhhccc-----------CCccccceeeeEEEecccCceEEEEecCCceEEEeeccCce
Confidence 4456777889999999999999966331 12345677889999999999999999999999999999999
Q ss_pred EEEEeCCC----------CeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeEEeeccccceEEEEE
Q 003236 579 AVLWCTES----------FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDF 648 (837)
Q Consensus 579 I~VWd~~t----------~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~sl~f 648 (837)
|+.|++.. .....++.+|.+.|+.++++.....|++|+.||+|++|+......+........+.-.++++
T Consensus 368 I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~~~f~~~~e~g~Plsvd~ 447 (577)
T KOG0642|consen 368 IRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESPCTFGEPKEHGYPLSVDR 447 (577)
T ss_pred eeeeccCCCCCcccccCcchhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCccccCCccccCCcceEee
Confidence 99995431 12345678999999999999998899999999999999988654322222222234456666
Q ss_pred cCCCCeEEEEEeCCCcEEEEECCCCeeeeEEec--------CCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEE
Q 003236 649 HPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC--------QSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKL 720 (837)
Q Consensus 649 spdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~--------~~~i~sl~~sp~g~~llags~dg~I~iwDl~s~~~~~~l 720 (837)
......+.++...-+.--++++.....+..+.. ...+..+.++|.....+++..++.|+++|..+++.+...
T Consensus 448 ~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~~~l~s~ 527 (577)
T KOG0642|consen 448 TSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTGKILHSM 527 (577)
T ss_pred ccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceecccccccccchhe
Confidence 543322232322233333344444444444332 134677889999999999999999999999999999999
Q ss_pred cCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeec
Q 003236 721 QGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSC 766 (837)
Q Consensus 721 ~~h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~ 766 (837)
..|...++++++.|+|-+|.+++ |+.|++|.+... .|+.....
T Consensus 528 ~a~~~svtslai~~ng~~l~s~s~d~sv~l~kld~k---~~~~es~~ 571 (577)
T KOG0642|consen 528 VAHKDSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVK---TCVLESTA 571 (577)
T ss_pred eeccceecceeecCCCceEEeecCCceeehhhccch---heeecccc
Confidence 99999999999999999999999 999999998765 45544433
|
|
| >KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown] | Back alignment and domain information |
|---|
Probab=99.73 E-value=3.8e-16 Score=158.66 Aligned_cols=241 Identities=19% Similarity=0.323 Sum_probs=180.7
Q ss_pred cCCCCCeEEEEEcCCCC-----EEEEEECCCcEEEEeCCC--CeEE--EEe-----ccCCCCeEEEEEcC-CCCEEEEEe
Q 003236 552 PASTSKVESCHFSPDGK-----LLATGGHDKKAVLWCTES--FTVK--STL-----EEHTQWITDVRFSP-SLSRLATSS 616 (837)
Q Consensus 552 ~~H~~~V~sl~fSpdg~-----~Lasgs~Dg~I~VWd~~t--~~~~--~~l-----~~h~~~I~~l~fsp-dg~~Latgs 616 (837)
..|.-+++.+-|.|+.+ +||+++ ..+++|.+.. .+.. ..+ ..+..++++..|+. +.++|.++|
T Consensus 93 fd~~YP~tK~~wiPd~~g~~pdlLATs~--D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSS 170 (364)
T KOG0290|consen 93 FDHPYPVTKLMWIPDSKGVYPDLLATSS--DFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSS 170 (364)
T ss_pred CCCCCCccceEecCCccccCcchhhccc--CeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeec
Confidence 36888999999999763 566654 4799998763 2211 112 34677899999987 678999999
Q ss_pred CCCeEEEEEcCCCC--ceeEEeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeeEEec----CCCeeEEEE
Q 003236 617 ADRTVRVWDTENPD--YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC----QSGATQMRF 690 (837)
Q Consensus 617 ~Dg~I~IWDl~~~~--~~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~----~~~i~sl~~ 690 (837)
-|-++.|||++++. .....+..|...|..|+|...+..+|++++.||.|++||++..+....+.. ..+...++|
T Consensus 171 iDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLsw 250 (364)
T KOG0290|consen 171 IDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSW 250 (364)
T ss_pred ccCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeecc
Confidence 99999999999852 345678889999999999998899999999999999999997654433322 345677888
Q ss_pred ecCCC-EEEEEEcC-CeEEEEECCCC-eEEEEEcCCCCCEEEEEEcCC-CCEEEEEe-CCeEEEEEcCCCCC---ceeEE
Q 003236 691 QPRLG-RILAAAIE-NYISILDVETQ-VCRLKLQGHKNQVHSVCWNTS-GEYLASVS-DELVRVWSIGSGSK---GECIH 762 (837)
Q Consensus 691 sp~g~-~llags~d-g~I~iwDl~s~-~~~~~l~~h~~~V~sl~~spd-g~~Lasgs-Dg~I~IwDl~s~~~---~~~i~ 762 (837)
++..- ++++...| ..|.|.|++.. .++..+.+|.+.|+.|+|.|. ...|++++ |..+.|||+..... ...+.
T Consensus 251 nkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~dPil 330 (364)
T KOG0290|consen 251 NKQDPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGEDPIL 330 (364)
T ss_pred CcCCchHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceEecCCCCceeeecCCcceEEEEecccccccCCCCchh
Confidence 87554 45554444 68999999975 788999999999999999996 45777777 77999999976432 12222
Q ss_pred EeecCCCceEEEEEeCCCCEEEEEEcCCeEEEE
Q 003236 763 ELSCTGNKFHSCVFHPTFPSLLVIGCYETLELW 795 (837)
Q Consensus 763 ~~~~~~~~I~sv~fspdg~~L~sgs~dg~I~Iw 795 (837)
... .+.+|..+.|++...--++.+.++++.+.
T Consensus 331 ay~-a~~EVNqi~Ws~~~~Dwiai~~~kkleiL 362 (364)
T KOG0290|consen 331 AYT-AGGEVNQIQWSSSQPDWIAICFGKKLEIL 362 (364)
T ss_pred hhh-ccceeeeeeecccCCCEEEEEecCeeeEE
Confidence 233 57889999999765444445555555543
|
|
| >KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown] | Back alignment and domain information |
|---|
Probab=99.73 E-value=5.4e-16 Score=157.36 Aligned_cols=263 Identities=20% Similarity=0.276 Sum_probs=194.6
Q ss_pred EEEEEE----CCCcEEEEeCCCCe--EE-EEeccCCCCeEEEEEcCC-CCEEEEEeCC-------CeEEEEEcCCCCce-
Q 003236 569 LLATGG----HDKKAVLWCTESFT--VK-STLEEHTQWITDVRFSPS-LSRLATSSAD-------RTVRVWDTENPDYS- 632 (837)
Q Consensus 569 ~Lasgs----~Dg~I~VWd~~t~~--~~-~~l~~h~~~I~~l~fspd-g~~Latgs~D-------g~I~IWDl~~~~~~- 632 (837)
.|++|+ .|+.|.+.+++... .. ..|..|.+.|+.++-+|- .+.|+|+..+ -.+.||.+......
T Consensus 28 cFlvgTnslK~dNqVhll~~d~e~s~l~skvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S 107 (370)
T KOG1007|consen 28 CFLVGTNSLKEDNQVHLLRLDSEGSELLSKVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQS 107 (370)
T ss_pred EEEEeccccCCcceeEEEEecCccchhhhhhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCcc
Confidence 445554 36778777665432 22 566778899999999994 5566666542 25789998754322
Q ss_pred -------eEEee-ccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCee-eeEEec------CCCeeEEEEec-CCCE
Q 003236 633 -------LRTFT-GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSC-AGVFKC------QSGATQMRFQP-RLGR 696 (837)
Q Consensus 633 -------~~~~~-~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~-i~~~~~------~~~i~sl~~sp-~g~~ 696 (837)
+..+. .+-+.|.|+.|.|++..+++.. |..|.+|++..+.. +..+.. ....++-+|+| ....
T Consensus 108 ~~~tlE~v~~Ldteavg~i~cvew~Pns~klasm~--dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgn 185 (370)
T KOG1007|consen 108 NSSTLECVASLDTEAVGKINCVEWEPNSDKLASMD--DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGN 185 (370)
T ss_pred ccchhhHhhcCCHHHhCceeeEEEcCCCCeeEEec--cCceEEEEcccCcchheeecccccccccceecccccCCCCccc
Confidence 12222 3456899999999988766433 88999999988765 333221 23467788998 4455
Q ss_pred EEEEEcCCeEEEEECCCCeEEEEEc-CCCCCEEEEEEcCCCC-EEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEE
Q 003236 697 ILAAAIENYISILDVETQVCRLKLQ-GHKNQVHSVCWNTSGE-YLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHS 773 (837)
Q Consensus 697 llags~dg~I~iwDl~s~~~~~~l~-~h~~~V~sl~~spdg~-~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~s 773 (837)
-++...|+++..||+++.++...+. .|...|..+.|+|+.. +|++|+ ||.|+|||.+..+ ..+.++..|...+++
T Consensus 186 qv~tt~d~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk--~pv~el~~HsHWvW~ 263 (370)
T KOG1007|consen 186 QVATTSDSTLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTK--FPVQELPGHSHWVWA 263 (370)
T ss_pred eEEEeCCCcEEEEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCC--ccccccCCCceEEEE
Confidence 6677788999999999987776665 4888999999999876 556666 8999999999764 688899999999999
Q ss_pred EEEeCCC-CEEEEEEcCCeEEEEECCC------------------------------CcEEEeccCCCCeeEEEEeCCCC
Q 003236 774 CVFHPTF-PSLLVIGCYETLELWNMTE------------------------------NKTLTLSAHDKLVSSLAASTVNG 822 (837)
Q Consensus 774 v~fspdg-~~L~sgs~dg~I~IwDl~s------------------------------~~~~~l~~h~~~V~sla~spdg~ 822 (837)
+.|+|.. ..|+++++|..|.+|.... |.+.++..|++.|.+++|+.-..
T Consensus 264 VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadP 343 (370)
T KOG1007|consen 264 VRFNPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADP 343 (370)
T ss_pred EEecCccceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccccceEEEeeccCCC
Confidence 9999976 5677888898999986521 11225678999999999997554
Q ss_pred -EEEEEECCCcEEE
Q 003236 823 -MVASASHDKCVKI 835 (837)
Q Consensus 823 -~LaSgs~DG~I~I 835 (837)
++|+-+.||.|.|
T Consensus 344 WiFASLSYDGRviI 357 (370)
T KOG1007|consen 344 WIFASLSYDGRVII 357 (370)
T ss_pred eeEEEeccCceEEe
Confidence 7788899999876
|
|
| >KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription] | Back alignment and domain information |
|---|
Probab=99.72 E-value=2.7e-16 Score=162.19 Aligned_cols=242 Identities=19% Similarity=0.298 Sum_probs=183.4
Q ss_pred CCCCCeEEEEEcCC----CCEEEEEECCCcEEEEeCCCCeEEEEeccCCCCeEEEEEcCC-CCEEEEEeCCCeEEEEEcC
Q 003236 553 ASTSKVESCHFSPD----GKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPS-LSRLATSSADRTVRVWDTE 627 (837)
Q Consensus 553 ~H~~~V~sl~fSpd----g~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~I~~l~fspd-g~~Latgs~Dg~I~IWDl~ 627 (837)
.|......++|+-| ..+||+|+.-|.|+|.|+.++++...+.+|...|+.|.|.|+ ..+|+++|.|..|++|++.
T Consensus 87 d~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~ 166 (385)
T KOG1034|consen 87 DHDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQ 166 (385)
T ss_pred CCCcceEEEEEEecCCCCCeeEEeecceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEecc
Confidence 46777888888764 347999999999999999999999999999999999999996 5789999999999999999
Q ss_pred CCCceeEEe---eccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeeEEe------------------------
Q 003236 628 NPDYSLRTF---TGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK------------------------ 680 (837)
Q Consensus 628 ~~~~~~~~~---~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~------------------------ 680 (837)
+... +..+ .+|.+.|.+++|++++. .+++|+.|..|++|++...+....+.
T Consensus 167 ~~~C-v~VfGG~egHrdeVLSvD~~~~gd-~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~f 244 (385)
T KOG1034|consen 167 TDVC-VAVFGGVEGHRDEVLSVDFSLDGD-RIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDF 244 (385)
T ss_pred CCeE-EEEecccccccCcEEEEEEcCCCC-eeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccc
Confidence 8654 5444 57999999999999988 66699999999999998432111110
Q ss_pred -----cCCCeeEEEEecCCCEEEEEEcCCeEEEEECCC-C-------------eEEEEEcCCCCCEEEE--EEcCCCCEE
Q 003236 681 -----CQSGATQMRFQPRLGRILAAAIENYISILDVET-Q-------------VCRLKLQGHKNQVHSV--CWNTSGEYL 739 (837)
Q Consensus 681 -----~~~~i~sl~~sp~g~~llags~dg~I~iwDl~s-~-------------~~~~~l~~h~~~V~sl--~~spdg~~L 739 (837)
+...|.|+.|. |+++++-+.++.|..|.... . ..+.++.-....|.-+ +|++-.+.|
T Consensus 245 st~diHrnyVDCvrw~--gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~l 322 (385)
T KOG1034|consen 245 STTDIHRNYVDCVRWF--GDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKML 322 (385)
T ss_pred cccccccchHHHHHHH--hhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHH
Confidence 01112333333 46788888899999998721 1 1222333333445544 456678899
Q ss_pred EEEe-CCeEEEEEcCCCCCcee-EEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECC
Q 003236 740 ASVS-DELVRVWSIGSGSKGEC-IHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMT 798 (837)
Q Consensus 740 asgs-Dg~I~IwDl~s~~~~~~-i~~~~~~~~~I~sv~fspdg~~L~sgs~dg~I~IwDl~ 798 (837)
+.|. .|.|++||++......+ .......+..|...+|+.|+..|+..+.|++|.-||..
T Consensus 323 a~gnq~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdrv 383 (385)
T KOG1034|consen 323 ALGNQSGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWDRV 383 (385)
T ss_pred hhccCCCcEEEEECCCCCCccCceEEeccccceeeeeeecccCcEEEEEeCCCcEEEEEee
Confidence 9998 89999999998765322 22223345678999999999999999999999999853
|
|
| >KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.1e-15 Score=179.26 Aligned_cols=292 Identities=17% Similarity=0.219 Sum_probs=209.0
Q ss_pred eEEEEecCCCCCeEEEEEcCCC-CEEEEEECCCcEEEEeCCC-------CeEEEEeccCCCCeEEEEEcCCCCEEEEEeC
Q 003236 546 TEFQLIPASTSKVESCHFSPDG-KLLATGGHDKKAVLWCTES-------FTVKSTLEEHTQWITDVRFSPSLSRLATSSA 617 (837)
Q Consensus 546 ~~~~~l~~H~~~V~sl~fSpdg-~~Lasgs~Dg~I~VWd~~t-------~~~~~~l~~h~~~I~~l~fspdg~~Latgs~ 617 (837)
..+..+..|...|..++.+++. .+|++|+.||+|+||++.. .+...++......+.++.+.+.+..+|+++.
T Consensus 1039 ~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av~t~ 1118 (1431)
T KOG1240|consen 1039 ILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFAVSTK 1118 (1431)
T ss_pred eEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeEEEEcC
Confidence 4577888999999999988755 8999999999999999753 2333445445778999999999999999999
Q ss_pred CCeEEEEEcCCCCce------eEEeec--cccceEEEEEcCCCC-eEEEEEeCCCcEEEEECCCCeeeeEEec---CCCe
Q 003236 618 DRTVRVWDTENPDYS------LRTFTG--HSTTVMSLDFHPSKE-DLLCSCDNNSEIRYWSINNGSCAGVFKC---QSGA 685 (837)
Q Consensus 618 Dg~I~IWDl~~~~~~------~~~~~~--h~~~V~sl~fspdg~-~llasgs~Dg~I~vwDl~t~~~i~~~~~---~~~i 685 (837)
||.|++.+++..... .+.... ....|..-+|..... .+++.+...+.|..||++.......++. ++.|
T Consensus 1119 DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG~v 1198 (1431)
T KOG1240|consen 1119 DGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHGLV 1198 (1431)
T ss_pred CCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCccccce
Confidence 999999999862211 111111 122333344443333 3666777788999999998877766654 5779
Q ss_pred eEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEc-CCCCCEEEEEEcCC---CCEEEEEe---CCeEEEEEcCCCCCc
Q 003236 686 TQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQ-GHKNQVHSVCWNTS---GEYLASVS---DELVRVWSIGSGSKG 758 (837)
Q Consensus 686 ~sl~~sp~g~~llags~dg~I~iwDl~s~~~~~~l~-~h~~~V~sl~~spd---g~~Lasgs---Dg~I~IwDl~s~~~~ 758 (837)
++++.+|.+.+++.|+..|.+.+||++-+.++..+. ++..+|+.++.+|- ....++++ .+.|.+|++.++...
T Consensus 1199 TSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~~~ 1278 (1431)
T KOG1240|consen 1199 TSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETGLRQ 1278 (1431)
T ss_pred eEEEecCCceEEEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecccCCCceeeeecccCcce
Confidence 999999999999999999999999999988887765 34567888777763 34555544 568999999987322
Q ss_pred eeEEEe----------e------cCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE-------------------
Q 003236 759 ECIHEL----------S------CTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL------------------- 803 (837)
Q Consensus 759 ~~i~~~----------~------~~~~~I~sv~fspdg~~L~sgs~dg~I~IwDl~s~~~~------------------- 803 (837)
..+..- . .+......+.+...+.++++|+.|..|+.||....+..
T Consensus 1279 ~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~p~~ss~~~~~~s~~~~~~~~s~~ 1358 (1431)
T KOG1240|consen 1279 TVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTRPEISSYAVPGPSTSYSTNSESYD 1358 (1431)
T ss_pred EEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCCCcccccccccCccccccccchhcc
Confidence 221111 0 01112334455556678999999999999997431100
Q ss_pred --------------------------------------EeccCCCCeeEEEEeCCC-CEEEEEECCCcEEEeC
Q 003236 804 --------------------------------------TLSAHDKLVSSLAASTVN-GMVASASHDKCVKIWK 837 (837)
Q Consensus 804 --------------------------------------~l~~h~~~V~sla~spdg-~~LaSgs~DG~I~IWd 837 (837)
.-..|..+|+++++.... .+|++++.||.|+||+
T Consensus 1359 ~~~i~~~~~i~e~i~~~~tv~~t~~~~~~~~~~~~~~~ps~~H~d~Itdma~~~~~q~llvs~s~dG~IkiWk 1431 (1431)
T KOG1240|consen 1359 LSTIPGSQFIDEFIIYQQTVGLTEALRENQKLRPGPSDPSTYHHDPITDMATLKSEQPLLVSSSRDGVIKIWK 1431 (1431)
T ss_pred ccccCCCccchhhhhhhhhcCchhhcccccccccCCCCCcccccchhhhhhhhccCccEEEEecCCCeeeecC
Confidence 011356678888766543 5899999999999996
|
|
| >KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.72 E-value=2.7e-16 Score=165.39 Aligned_cols=227 Identities=19% Similarity=0.312 Sum_probs=173.4
Q ss_pred EEEEecCCCCCeEEEEEcC-CCCEEEEEECCCcEEEEeCCCC-------eEEEEeccCCCCeEEEEEcCC-CCEEEEEeC
Q 003236 547 EFQLIPASTSKVESCHFSP-DGKLLATGGHDKKAVLWCTESF-------TVKSTLEEHTQWITDVRFSPS-LSRLATSSA 617 (837)
Q Consensus 547 ~~~~l~~H~~~V~sl~fSp-dg~~Lasgs~Dg~I~VWd~~t~-------~~~~~l~~h~~~I~~l~fspd-g~~Latgs~ 617 (837)
.+-.+.||+++|..++|+| +...||+|+.|.+|.||.+... +.+..+.+|...|--|.|+|. .+.|++++.
T Consensus 73 ~~P~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~ 152 (472)
T KOG0303|consen 73 SYPLVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGS 152 (472)
T ss_pred CCCCccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccC
Confidence 3456789999999999999 5568999999999999987643 456788899999999999995 678999999
Q ss_pred CCeEEEEEcCCCCceeEEeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeeEEecCC--CeeEEEEecCCC
Q 003236 618 DRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQS--GATQMRFQPRLG 695 (837)
Q Consensus 618 Dg~I~IWDl~~~~~~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~~~--~i~sl~~sp~g~ 695 (837)
|.+|.+||+.+++..+ .+. |..-|++++|+.+|. ++++.+.|..|+|||.++++.+..-..+. ....+.|..++.
T Consensus 153 Dn~v~iWnv~tgeali-~l~-hpd~i~S~sfn~dGs-~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~g~ 229 (472)
T KOG0303|consen 153 DNTVSIWNVGTGEALI-TLD-HPDMVYSMSFNRDGS-LLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLASGK 229 (472)
T ss_pred CceEEEEeccCCceee-ecC-CCCeEEEEEeccCCc-eeeeecccceeEEEcCCCCcEeeecccccCCCcceeEEeccCc
Confidence 9999999999988633 344 999999999999987 67788999999999999999988775433 345677778877
Q ss_pred EEEEEEc----CCeEEEEECCCCe---EEEEEcCCCCCEEEEEEcCCCCEEEEEe--CCeEEEEEcCCCCCc-eeEEEee
Q 003236 696 RILAAAI----ENYISILDVETQV---CRLKLQGHKNQVHSVCWNTSGEYLASVS--DELVRVWSIGSGSKG-ECIHELS 765 (837)
Q Consensus 696 ~llags~----dg~I~iwDl~s~~---~~~~l~~h~~~V~sl~~spdg~~Lasgs--Dg~I~IwDl~s~~~~-~~i~~~~ 765 (837)
+++.+. +..+-+||...-. ...++. ..+.|.---|++|..+|+.++ |+.|+.|.+...... ..+.++.
T Consensus 230 -i~tTGfsr~seRq~aLwdp~nl~eP~~~~elD-tSnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d~P~~hyln~f~ 307 (472)
T KOG0303|consen 230 -IFTTGFSRMSERQIALWDPNNLEEPIALQELD-TSNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNEPPFVHYLNTFS 307 (472)
T ss_pred -eeeeccccccccceeccCcccccCcceeEEec-cCCceEEeeecCCCCEEEEEecCCcceEEEEecCCCceeEEecccc
Confidence 554443 5689999876542 233333 456677778899999888877 999999999876321 1222222
Q ss_pred cCCCceEEEEEeCC
Q 003236 766 CTGNKFHSCVFHPT 779 (837)
Q Consensus 766 ~~~~~I~sv~fspd 779 (837)
...+-..+.|-|.
T Consensus 308 -S~epQRG~g~mPK 320 (472)
T KOG0303|consen 308 -SKEPQRGMGFMPK 320 (472)
T ss_pred -cCCcccccccccc
Confidence 2334455555554
|
|
| >KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.4e-15 Score=174.45 Aligned_cols=258 Identities=18% Similarity=0.234 Sum_probs=189.4
Q ss_pred CcEEEEeCCCC-eEEEEeccCCCCeEEEEEcC-CCCEEEEEeCCCeEEEEEcCCCCce-----eEEeeccccceEEEEEc
Q 003236 577 KKAVLWCTESF-TVKSTLEEHTQWITDVRFSP-SLSRLATSSADRTVRVWDTENPDYS-----LRTFTGHSTTVMSLDFH 649 (837)
Q Consensus 577 g~I~VWd~~t~-~~~~~l~~h~~~I~~l~fsp-dg~~Latgs~Dg~I~IWDl~~~~~~-----~~~~~~h~~~V~sl~fs 649 (837)
+.+.||+++.. .+...+ .-...|.|++|+| +..+|+.|+.+|.|.+||+...... -.....|..+|+.+.|.
T Consensus 222 ~~~~vW~~~~p~~Pe~~~-~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~ 300 (555)
T KOG1587|consen 222 GVLLVWSLKNPNTPELVL-ESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWL 300 (555)
T ss_pred ceEEEEecCCCCCceEEE-ecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEe
Confidence 47999999876 444444 3567899999999 5778889999999999999876542 12345688999999998
Q ss_pred CCCCe-EEEEEeCCCcEEEEECCCCeee------eEE-------ecCCCeeEEEEecC-CCEEEEEEcCCeEEEEECCCC
Q 003236 650 PSKED-LLCSCDNNSEIRYWSINNGSCA------GVF-------KCQSGATQMRFQPR-LGRILAAAIENYISILDVETQ 714 (837)
Q Consensus 650 pdg~~-llasgs~Dg~I~vwDl~t~~~i------~~~-------~~~~~i~sl~~sp~-g~~llags~dg~I~iwDl~s~ 714 (837)
.+... =|++++.||.|..|+++.-... ... .....++++.|.+. -..+++|+.+|.|..-+....
T Consensus 301 ~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~ 380 (555)
T KOG1587|consen 301 QNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGY 380 (555)
T ss_pred ccCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCC
Confidence 65333 2447778999999988754321 111 12345788999884 456888888998887443322
Q ss_pred ---e-----EEEEEcCCCCCEEEEEEcCCCCEE-EEEeCCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEE-E
Q 003236 715 ---V-----CRLKLQGHKNQVHSVCWNTSGEYL-ASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSL-L 784 (837)
Q Consensus 715 ---~-----~~~~l~~h~~~V~sl~~spdg~~L-asgsDg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fspdg~~L-~ 784 (837)
. ....+..|.++|+++.++|-+..+ .+++|.+|+||...... .++..+..+...+++++|||....+ +
T Consensus 381 ~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~--~Pl~~~~~~~~~v~~vaWSptrpavF~ 458 (555)
T KOG1587|consen 381 TPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIA--SPLLSLDSSPDYVTDVAWSPTRPAVFA 458 (555)
T ss_pred cccccccccccccccccCcceEeeecCCCccceeeeeccceeEeccccCCC--CcchhhhhccceeeeeEEcCcCceEEE
Confidence 1 133455688999999999977544 44559999999977321 5666677777779999999988654 4
Q ss_pred EEEcCCeEEEEECCCCcE--E-EeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 003236 785 VIGCYETLELWNMTENKT--L-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 837 (837)
Q Consensus 785 sgs~dg~I~IwDl~s~~~--~-~l~~h~~~V~sla~spdg~~LaSgs~DG~I~IWd 837 (837)
++..+|.|.|||+..... + ....+....+.+.|++.|++|++|+..|.|++|+
T Consensus 459 ~~d~~G~l~iWDLl~~~~~Pv~s~~~~~~~l~~~~~s~~g~~lavGd~~G~~~~~~ 514 (555)
T KOG1587|consen 459 TVDGDGNLDIWDLLQDDEEPVLSQKVCSPALTRVRWSPNGKLLAVGDANGTTHILK 514 (555)
T ss_pred EEcCCCceehhhhhccccCCcccccccccccceeecCCCCcEEEEecCCCcEEEEE
Confidence 555699999999865432 2 4444567778889999999999999999999985
|
|
| >KOG0649 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.72 E-value=2.6e-15 Score=149.14 Aligned_cols=268 Identities=15% Similarity=0.175 Sum_probs=191.9
Q ss_pred CeEEEEEcCCCCEEEEEECCCcEEEEeCCC----------CeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEc
Q 003236 557 KVESCHFSPDGKLLATGGHDKKAVLWCTES----------FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDT 626 (837)
Q Consensus 557 ~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t----------~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl 626 (837)
.|.+-+|+|.+++|+.|..+|.|.++.+++ ...+....+|.++|+.++|.. .+|++|+ ||.|+-|..
T Consensus 12 tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~d--~~Lls~g-dG~V~gw~W 88 (325)
T KOG0649|consen 12 TVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFHD--DFLLSGG-DGLVYGWEW 88 (325)
T ss_pred HHHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeeeh--hheeecc-CceEEEeee
Confidence 366778999999999999999999998753 234455589999999999983 4667665 599999987
Q ss_pred CCCCcee-------EEeec-----cccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeeEEecCCC-eeEEEEecC
Q 003236 627 ENPDYSL-------RTFTG-----HSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSG-ATQMRFQPR 693 (837)
Q Consensus 627 ~~~~~~~-------~~~~~-----h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~~~~-i~sl~~sp~ 693 (837)
....... ....- .-..|+++...|..+.++.+| .|+.++.||+++|+..++++.+.. +.++.--..
T Consensus 89 ~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~Ag-GD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~ 167 (325)
T KOG0649|consen 89 NEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAG-GDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRNA 167 (325)
T ss_pred hhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEec-CCeEEEEEEecCCEEEEEEcCCcceeeeeeeccc
Confidence 6432100 01111 224688999999877777555 599999999999999999997654 777777666
Q ss_pred CCEEEEEEcCCeEEEEECCCCeEEEEEcCCC----------CCEEEEEEcCCCCEEEEEeCCeEEEEEcCCCCCceeEEE
Q 003236 694 LGRILAAAIENYISILDVETQVCRLKLQGHK----------NQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHE 763 (837)
Q Consensus 694 g~~llags~dg~I~iwDl~s~~~~~~l~~h~----------~~V~sl~~spdg~~LasgsDg~I~IwDl~s~~~~~~i~~ 763 (837)
...+++|++||++++||+++++++..+...+ .+|-+++. +..+|++|....+.+|.+++. ++...
T Consensus 168 ~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~--~edWlvCGgGp~lslwhLrss---e~t~v 242 (325)
T KOG0649|consen 168 NGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAV--NEDWLVCGGGPKLSLWHLRSS---ESTCV 242 (325)
T ss_pred CcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEec--cCceEEecCCCceeEEeccCC---CceEE
Confidence 7889999999999999999999988775421 24555554 567888888889999999987 44444
Q ss_pred eecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEEEeccCCCCeeEEEEeCC-CCEEEEEECCCcEEEe
Q 003236 764 LSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSAHDKLVSSLAASTV-NGMVASASHDKCVKIW 836 (837)
Q Consensus 764 ~~~~~~~I~sv~fspdg~~L~sgs~dg~I~IwDl~s~~~~~l~~h~~~V~sla~spd-g~~LaSgs~DG~I~IW 836 (837)
+.. ...+..+.|..+ .+++++..+.|.-|.+..--...........++..|+-. -++|-.++....+.|+
T Consensus 243 fpi-pa~v~~v~F~~d--~vl~~G~g~~v~~~~l~Gvl~a~ip~~s~~c~s~s~~~~p~k~~s~ag~s~~~~i~ 313 (325)
T KOG0649|consen 243 FPI-PARVHLVDFVDD--CVLIGGEGNHVQSYTLNGVLQANIPVESTACYSASWQTSPIKFISIAGFSNKLHIL 313 (325)
T ss_pred Eec-ccceeEeeeecc--eEEEeccccceeeeeeccEEEEeccCCccceeeecccCCceEEEEecccceeeeee
Confidence 432 456777888766 577777777888887754333333333334444444432 2455566666666665
|
|
| >KOG1963 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.71 E-value=2.7e-15 Score=172.20 Aligned_cols=281 Identities=17% Similarity=0.292 Sum_probs=210.9
Q ss_pred CCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCC----CeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCC
Q 003236 553 ASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES----FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTEN 628 (837)
Q Consensus 553 ~H~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t----~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~ 628 (837)
.|.-.++|.++||+++++|+|..||.|.||.--. ......++-|.+.|++++|+++|.+|++|+..|.+.+|.+++
T Consensus 203 ~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T 282 (792)
T KOG1963|consen 203 HHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLET 282 (792)
T ss_pred hhcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEecCCceEeecccceEEEEEeecC
Confidence 5667799999999999999999999999995322 223456777999999999999999999999999999999999
Q ss_pred CCceeEEeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeeEEec------------CCCeeEEEEecCCCE
Q 003236 629 PDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC------------QSGATQMRFQPRLGR 696 (837)
Q Consensus 629 ~~~~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~------------~~~i~sl~~sp~g~~ 696 (837)
++ ...+..-.++|..+.++||++.+. .+..|+.|.+....+......+.+ .+-.+.++++|.-+.
T Consensus 283 ~~--kqfLPRLgs~I~~i~vS~ds~~~s-l~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~~ 359 (792)
T KOG1963|consen 283 GK--KQFLPRLGSPILHIVVSPDSDLYS-LVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPRTNS 359 (792)
T ss_pred CC--cccccccCCeeEEEEEcCCCCeEE-EEecCceEEEEeccchhhhhhccCccCCCccccccccccceeEEEcCCCCc
Confidence 77 566677789999999999987555 555599999988765554443332 122567889998888
Q ss_pred EEEEEcCCeEEEEECCCCeEEEEEcC-----C------CCCEEEEEEcCCCCEEEEEe---------CC--eEEEEEcCC
Q 003236 697 ILAAAIENYISILDVETQVCRLKLQG-----H------KNQVHSVCWNTSGEYLASVS---------DE--LVRVWSIGS 754 (837)
Q Consensus 697 llags~dg~I~iwDl~s~~~~~~l~~-----h------~~~V~sl~~spdg~~Lasgs---------Dg--~I~IwDl~s 754 (837)
++..+..+.|.+||+-+.+.+..+.. + .-.++.++.+..|.++++.. || .+++|-...
T Consensus 360 ~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~LKFW~~n~ 439 (792)
T KOG1963|consen 360 LVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATLEARIDKFNFFDGEVSLKFWQYNP 439 (792)
T ss_pred eeecCCCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhccceEEEEeeeeehhhhccCceEEEEEEEEcC
Confidence 88999999999999988766555431 2 22467788888899998874 33 688998776
Q ss_pred CCCceeEEE--eecCCCceEEEEEeC-CCC-EEEEEEcCCeEEEEECCCCc----------EE-EeccCCCCeeEEEEeC
Q 003236 755 GSKGECIHE--LSCTGNKFHSCVFHP-TFP-SLLVIGCYETLELWNMTENK----------TL-TLSAHDKLVSSLAAST 819 (837)
Q Consensus 755 ~~~~~~i~~--~~~~~~~I~sv~fsp-dg~-~L~sgs~dg~I~IwDl~s~~----------~~-~l~~h~~~V~sla~sp 819 (837)
......+.+ ...|+..+...++.+ ... .+++++.||.++||-+.+.+ +. .-..|..++++++|+.
T Consensus 440 ~~kt~~L~T~I~~PH~~~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~~k~~s~W~c~~i~sy~k~~i~a~~fs~ 519 (792)
T KOG1963|consen 440 NSKTFILNTKINNPHGNAFVATIFLNPTRSVRCVTASVDGDFKIWVFTDDSNIYKKSSNWTCKAIGSYHKTPITALCFSQ 519 (792)
T ss_pred CcceeEEEEEEecCCCceeEEEEEecCcccceeEEeccCCeEEEEEEecccccCcCccceEEeeeeccccCcccchhhcC
Confidence 544333322 335666555555543 333 78899999999999883322 11 1124789999999999
Q ss_pred CCCEEEEEECCCcEEEeC
Q 003236 820 VNGMVASASHDKCVKIWK 837 (837)
Q Consensus 820 dg~~LaSgs~DG~I~IWd 837 (837)
||..| +++.|++|.|||
T Consensus 520 dGsll-a~s~~~~Itiwd 536 (792)
T KOG1963|consen 520 DGSLL-AVSFDDTITIWD 536 (792)
T ss_pred CCcEE-EEecCCEEEEec
Confidence 99655 456788999997
|
|
| >KOG1188 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.70 E-value=5.8e-16 Score=160.67 Aligned_cols=275 Identities=15% Similarity=0.179 Sum_probs=198.9
Q ss_pred CCCeEEcccCCCceEEeecCCCCCCCCccccccccCCCeeeeEEEEecCCCCCeEEEEEcC--CCCEEEEEECCCcEEEE
Q 003236 505 MDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSP--DGKLLATGGHDKKAVLW 582 (837)
Q Consensus 505 ~~~~v~~Gs~D~~v~~w~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~H~~~V~sl~fSp--dg~~Lasgs~Dg~I~VW 582 (837)
-+..++++...+.|++|.... + ..+..+++|...+..+.|.. ....+.+++.||+|++|
T Consensus 39 ~e~~vav~lSngsv~lyd~~t----------------g---~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~w 99 (376)
T KOG1188|consen 39 FETAVAVSLSNGSVRLYDKGT----------------G---QLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLW 99 (376)
T ss_pred cceeEEEEecCCeEEEEeccc----------------h---hhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEE
Confidence 346788999999999985432 2 22455667777788888876 45678999999999999
Q ss_pred eCCCCeEEEE--eccCC-CCeEEEEEcCCCCEEEEEeC----CCeEEEEEcCCCCcee-EEeeccccceEEEEEcCCCCe
Q 003236 583 CTESFTVKST--LEEHT-QWITDVRFSPSLSRLATSSA----DRTVRVWDTENPDYSL-RTFTGHSTTVMSLDFHPSKED 654 (837)
Q Consensus 583 d~~t~~~~~~--l~~h~-~~I~~l~fspdg~~Latgs~----Dg~I~IWDl~~~~~~~-~~~~~h~~~V~sl~fspdg~~ 654 (837)
|+........ +..+. .+..|++....+..+++|.. |-.|.+||++.....+ .....|...|+++.|+|.+..
T Consensus 100 D~Rs~~e~a~~~~~~~~~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pn 179 (376)
T KOG1188|consen 100 DIRSQAESARISWTQQSGTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPN 179 (376)
T ss_pred EeecchhhhheeccCCCCCcceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCC
Confidence 9987655543 34454 46677777767788888764 6789999999877644 445679999999999999999
Q ss_pred EEEEEeCCCcEEEEECCCC----eeeeEEecCCCeeEEEEecCC-CEEEEEEcCCeEEEEECCCCeEEEEEcCCC-----
Q 003236 655 LLCSCDNNSEIRYWSINNG----SCAGVFKCQSGATQMRFQPRL-GRILAAAIENYISILDVETQVCRLKLQGHK----- 724 (837)
Q Consensus 655 llasgs~Dg~I~vwDl~t~----~~i~~~~~~~~i~sl~~sp~g-~~llags~dg~I~iwDl~s~~~~~~l~~h~----- 724 (837)
+|++|+.||.|.+||++.. ..+.++.+...|.++.|..++ +.|.+.+......+|+++.+.+...+....
T Consensus 180 lLlSGSvDGLvnlfD~~~d~EeDaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~~~~~~~~d 259 (376)
T KOG1188|consen 180 LLLSGSVDGLVNLFDTKKDNEEDALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWLENPDVSADD 259 (376)
T ss_pred eEEeecccceEEeeecCCCcchhhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhcccCccchhhh
Confidence 9999999999999999754 245667777889999998875 468899999999999999887655443211
Q ss_pred -------CCEEEEEEcCCCCEEEEE-e-CCeEEEEEc---CCCCCceeEEEeec-CCCceEEEEEeCCCCEEEEEEcCCe
Q 003236 725 -------NQVHSVCWNTSGEYLASV-S-DELVRVWSI---GSGSKGECIHELSC-TGNKFHSCVFHPTFPSLLVIGCYET 791 (837)
Q Consensus 725 -------~~V~sl~~spdg~~Lasg-s-Dg~I~IwDl---~s~~~~~~i~~~~~-~~~~I~sv~fspdg~~L~sgs~dg~ 791 (837)
..+.......+..+++.+ + -+...++-+ .++.....+..+.+ |...|.++.|...+..+++|+.||.
T Consensus 260 ~r~~~~~dY~I~~~~~~~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~~~eiVR~i~~~~~~~~l~TGGEDG~ 339 (376)
T KOG1188|consen 260 LRKEDNCDYVINEHSPGDKDTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQGGHEEIVRDILFDVKNDVLYTGGEDGL 339 (376)
T ss_pred HHhhhhhhheeecccCCCcceEEEeccccCceeEEEeeecccccccCccccccCCcHHHHHHHhhhcccceeeccCCCce
Confidence 111111111233344333 3 344444433 33433344555555 5566788999999999999999999
Q ss_pred EEEEECC
Q 003236 792 LELWNMT 798 (837)
Q Consensus 792 I~IwDl~ 798 (837)
|.+|...
T Consensus 340 l~~Wk~~ 346 (376)
T KOG1188|consen 340 LQAWKVE 346 (376)
T ss_pred EEEEecC
Confidence 9999853
|
|
| >PRK01742 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=2.4e-15 Score=172.33 Aligned_cols=233 Identities=16% Similarity=0.108 Sum_probs=165.3
Q ss_pred CCcEEEEeCCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCC---CeEEEEEcCCCCc-eeEEeeccccceEEEEEcCC
Q 003236 576 DKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSAD---RTVRVWDTENPDY-SLRTFTGHSTTVMSLDFHPS 651 (837)
Q Consensus 576 Dg~I~VWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~D---g~I~IWDl~~~~~-~~~~~~~h~~~V~sl~fspd 651 (837)
+..|+|||.+... ...+..|...|.+++|+|||+.|+.++.+ ..|++||+.++.. .+..+.+ ...+++|+||
T Consensus 183 ~~~i~i~d~dg~~-~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g---~~~~~~wSPD 258 (429)
T PRK01742 183 PYEVRVADYDGFN-QFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRG---HNGAPAFSPD 258 (429)
T ss_pred eEEEEEECCCCCC-ceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCC---ccCceeECCC
Confidence 4689999987654 45667788899999999999999988754 3799999987653 2222333 3457899999
Q ss_pred CCeEEEEEeCCCcEE--EEECCCCeeeeEEecCCCeeEEEEecCCCEEEEEE-cCCeEEEEECCCC-eEEEEEcCCCCCE
Q 003236 652 KEDLLCSCDNNSEIR--YWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAA-IENYISILDVETQ-VCRLKLQGHKNQV 727 (837)
Q Consensus 652 g~~llasgs~Dg~I~--vwDl~t~~~i~~~~~~~~i~sl~~sp~g~~llags-~dg~I~iwDl~s~-~~~~~l~~h~~~V 727 (837)
|..++++.+.+|.+. +||+.++...........+....|+|+++.|++++ .++...||++... .....+ .+..
T Consensus 259 G~~La~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l-~~~~-- 335 (429)
T PRK01742 259 GSRLAFASSKDGVLNIYVMGANGGTPSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLV-GGRG-- 335 (429)
T ss_pred CCEEEEEEecCCcEEEEEEECCCCCeEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEe-cCCC--
Confidence 998887777777654 55777666555444455677899999999887665 4677777765432 222223 3433
Q ss_pred EEEEEcCCCCEEEEEeCCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEEC---CCCcEEE
Q 003236 728 HSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNM---TENKTLT 804 (837)
Q Consensus 728 ~sl~~spdg~~LasgsDg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fspdg~~L~sgs~dg~I~IwDl---~s~~~~~ 804 (837)
.++.|+|||++|+.++...+.+||+.++.. ...... .....+.|+|+|++|++++.++.+.+|++ .......
T Consensus 336 ~~~~~SpDG~~ia~~~~~~i~~~Dl~~g~~---~~lt~~--~~~~~~~~sPdG~~i~~~s~~g~~~~l~~~~~~G~~~~~ 410 (429)
T PRK01742 336 YSAQISADGKTLVMINGDNVVKQDLTSGST---EVLSST--FLDESPSISPNGIMIIYSSTQGLGKVLQLVSADGRFKAR 410 (429)
T ss_pred CCccCCCCCCEEEEEcCCCEEEEECCCCCe---EEecCC--CCCCCceECCCCCEEEEEEcCCCceEEEEEECCCCceEE
Confidence 467899999999888745577799987732 111111 23356789999999999999887776654 3334446
Q ss_pred eccCCCCeeEEEEeCC
Q 003236 805 LSAHDKLVSSLAASTV 820 (837)
Q Consensus 805 l~~h~~~V~sla~spd 820 (837)
+..|.+.+..++|+|-
T Consensus 411 l~~~~g~~~~p~wsp~ 426 (429)
T PRK01742 411 LPGSDGQVKFPAWSPY 426 (429)
T ss_pred ccCCCCCCCCcccCCC
Confidence 7788888999999984
|
|
| >KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.70 E-value=6.3e-16 Score=167.55 Aligned_cols=262 Identities=16% Similarity=0.242 Sum_probs=190.3
Q ss_pred CCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEeccCCCCeEEEEE-cC-------CCCEEEEEeCCCeEEEE
Q 003236 553 ASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRF-SP-------SLSRLATSSADRTVRVW 624 (837)
Q Consensus 553 ~H~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~I~~l~f-sp-------dg~~Latgs~Dg~I~IW 624 (837)
.|...|.||.|+.+...+.+++ |..+.+|...+......+.-..+.|....+ -+ ....|+.++.||.+.|.
T Consensus 12 r~~e~vc~v~w~~~eei~~~~d-Dh~~~~~~~~~~~s~~~~~~p~df~pt~~h~~~rs~~~g~~~d~~~i~s~DGkf~il 90 (737)
T KOG1524|consen 12 RNSEKVCCVDWSSNEEIYFVSD-DHQIFKWSDVSRDSVEVAKLPDDFVPTDMHLGGRSSGGGKGSDTLLICSNDGRFVIL 90 (737)
T ss_pred ccceeEEeecccccceEEEecc-CceEEEeecccchhhhhhhCCcccCCccccccccccCCCCCcceEEEEcCCceEEEe
Confidence 5677788999998877666655 555666643332322222222222222211 11 23478889999999988
Q ss_pred EcCCCCceeEEeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeeEEecCCCeeEEEEecCCCEEEEEEcCC
Q 003236 625 DTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIEN 704 (837)
Q Consensus 625 Dl~~~~~~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~~~~i~sl~~sp~g~~llags~dg 704 (837)
+-.. ..-+....|.+.|.|-.|+|+|..++ ++++||.|++|.-...-..........|.|++|.|+.+.++.+. .+
T Consensus 91 ~k~~--rVE~sv~AH~~A~~~gRW~~dGtgLl-t~GEDG~iKiWSrsGMLRStl~Q~~~~v~c~~W~p~S~~vl~c~-g~ 166 (737)
T KOG1524|consen 91 NKSA--RVERSISAHAAAISSGRWSPDGAGLL-TAGEDGVIKIWSRSGMLRSTVVQNEESIRCARWAPNSNSIVFCQ-GG 166 (737)
T ss_pred cccc--hhhhhhhhhhhhhhhcccCCCCceee-eecCCceEEEEeccchHHHHHhhcCceeEEEEECCCCCceEEec-CC
Confidence 7653 23567788999999999999998666 88899999999865322222233457899999999988776654 36
Q ss_pred eEEEEECCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEE
Q 003236 705 YISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSL 783 (837)
Q Consensus 705 ~I~iwDl~s~~~~~~l~~h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fspdg~~L 783 (837)
.+.|=.+.-...+...+.|.+-|.++.|++..+++++|+ |-..+|||-.. ..+..-..|..+|++++|.|+ ..+
T Consensus 167 h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~G----~~Lf~S~~~ey~ITSva~npd-~~~ 241 (737)
T KOG1524|consen 167 HISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQG----ANLFTSAAEEYAITSVAFNPE-KDY 241 (737)
T ss_pred eEEEeecccccceeEEeccCcEEEEeecCccccceeecCCceeEEeecccC----cccccCChhccceeeeeeccc-cce
Confidence 677777777777778889999999999999999999999 88999999654 466667788999999999999 434
Q ss_pred EEEEcCCeEEEEECCCCcEEEeccCCCCeeEEEEeCCCCEEEEEECCCcEEE
Q 003236 784 LVIGCYETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKI 835 (837)
Q Consensus 784 ~sgs~dg~I~IwDl~s~~~~~l~~h~~~V~sla~spdg~~LaSgs~DG~I~I 835 (837)
++ ++.+++++= ....+.|..++||+||..++.|+..|.|.+
T Consensus 242 ~v-~S~nt~R~~----------~p~~GSifnlsWS~DGTQ~a~gt~~G~v~~ 282 (737)
T KOG1524|consen 242 LL-WSYNTARFS----------SPRVGSIFNLSWSADGTQATCGTSTGQLIV 282 (737)
T ss_pred ee-eeeeeeeec----------CCCccceEEEEEcCCCceeeccccCceEEE
Confidence 44 444455522 234568999999999999999999887753
|
|
| >KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown] | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.8e-15 Score=153.53 Aligned_cols=248 Identities=16% Similarity=0.280 Sum_probs=184.0
Q ss_pred EEecCCCCCeEEEEEcC-CCCEEEEEECC-------CcEEEEeCCC---------CeEEEEec-cCCCCeEEEEEcCCCC
Q 003236 549 QLIPASTSKVESCHFSP-DGKLLATGGHD-------KKAVLWCTES---------FTVKSTLE-EHTQWITDVRFSPSLS 610 (837)
Q Consensus 549 ~~l~~H~~~V~sl~fSp-dg~~Lasgs~D-------g~I~VWd~~t---------~~~~~~l~-~h~~~I~~l~fspdg~ 610 (837)
.+|..|.+.|+.++-+| |.++|+++..+ ..+.||.+.. .+++..+. .+-+.|.||.|.|++.
T Consensus 57 kvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew~Pns~ 136 (370)
T KOG1007|consen 57 KVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEWEPNSD 136 (370)
T ss_pred hhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcCCHHHhCceeeEEEcCCCC
Confidence 45678899999999999 66677776542 2578998753 23344443 4556899999999999
Q ss_pred EEEEEeCCCeEEEEEcCCCCceeEEe-----eccccceEEEEEcCC-CCeEEEEEeCCCcEEEEECCCCeeeeEEec--C
Q 003236 611 RLATSSADRTVRVWDTENPDYSLRTF-----TGHSTTVMSLDFHPS-KEDLLCSCDNNSEIRYWSINNGSCAGVFKC--Q 682 (837)
Q Consensus 611 ~Latgs~Dg~I~IWDl~~~~~~~~~~-----~~h~~~V~sl~fspd-g~~llasgs~Dg~I~vwDl~t~~~i~~~~~--~ 682 (837)
.|++-. |..|.+|++......+..+ ..+....++-+|+|. ..+.+++. .|+++..||+++.++...+.. .
T Consensus 137 klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt-~d~tl~~~D~RT~~~~~sI~dAHg 214 (370)
T KOG1007|consen 137 KLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATT-SDSTLQFWDLRTMKKNNSIEDAHG 214 (370)
T ss_pred eeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEe-CCCcEEEEEccchhhhcchhhhhc
Confidence 888875 8899999998766423222 235567888899983 23344344 489999999999888877764 4
Q ss_pred CCeeEEEEecCCCE-EEEEEcCCeEEEEECCCC-eEEEEEcCCCCCEEEEEEcCCC-CEEEEEe-CCeEEEEEcCCCC--
Q 003236 683 SGATQMRFQPRLGR-ILAAAIENYISILDVETQ-VCRLKLQGHKNQVHSVCWNTSG-EYLASVS-DELVRVWSIGSGS-- 756 (837)
Q Consensus 683 ~~i~sl~~sp~g~~-llags~dg~I~iwDl~s~-~~~~~l~~h~~~V~sl~~spdg-~~Lasgs-Dg~I~IwDl~s~~-- 756 (837)
..+..+.|+|+..+ |++++.||.|+|||.+.. .++.++.+|..+|.++.|+|.. .+|++++ |..|.+|-..+-.
T Consensus 215 q~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE 294 (370)
T KOG1007|consen 215 QRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCASSVSSE 294 (370)
T ss_pred ceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEecCccceEEEecCCCceeEEEeccccccc
Confidence 45899999998766 556677899999999864 6889999999999999999964 4555666 9999999654311
Q ss_pred -------------------C-----ceeEEEeecCCCceEEEEEeCCCCEEE-EEEcCCeEEEEECC
Q 003236 757 -------------------K-----GECIHELSCTGNKFHSCVFHPTFPSLL-VIGCYETLELWNMT 798 (837)
Q Consensus 757 -------------------~-----~~~i~~~~~~~~~I~sv~fspdg~~L~-sgs~dg~I~IwDl~ 798 (837)
+ ...+.++..|...|++++|+.-.++++ +-+.||.+.|=.+.
T Consensus 295 ~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadPWiFASLSYDGRviIs~V~ 361 (370)
T KOG1007|consen 295 QQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADPWIFASLSYDGRVIISSVP 361 (370)
T ss_pred cccccccccccCcchhhHHhcccccccccccccccccceEEEeeccCCCeeEEEeccCceEEeecCC
Confidence 0 113446777899999999999888765 45778888776654
|
|
| >KOG0649 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.69 E-value=6.1e-15 Score=146.55 Aligned_cols=229 Identities=20% Similarity=0.218 Sum_probs=168.2
Q ss_pred CeEEEEEcCCCCEEEEEeCCCeEEEEEcCC---------CCceeEEeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEE
Q 003236 599 WITDVRFSPSLSRLATSSADRTVRVWDTEN---------PDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWS 669 (837)
Q Consensus 599 ~I~~l~fspdg~~Latgs~Dg~I~IWDl~~---------~~~~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwD 669 (837)
.|..-+|+|.+++|+.|+.+|.|.++.+.. ++.++..+.+|.++|+.++|+ +.++++|+ ||.|+-|.
T Consensus 12 tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~---d~~Lls~g-dG~V~gw~ 87 (325)
T KOG0649|consen 12 TVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFH---DDFLLSGG-DGLVYGWE 87 (325)
T ss_pred HHHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeee---hhheeecc-CceEEEee
Confidence 456678999999999999999999998763 334556678999999999999 33566776 69999998
Q ss_pred CCCCee------eeEEe--------cCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEcCC
Q 003236 670 INNGSC------AGVFK--------CQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTS 735 (837)
Q Consensus 670 l~t~~~------i~~~~--------~~~~i~sl~~sp~g~~llags~dg~I~iwDl~s~~~~~~l~~h~~~V~sl~~spd 735 (837)
.+.... +.... .-..|+.+-..|..+.++.++.|+.++.||+++++..+++++|++.|.++.--..
T Consensus 88 W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~ 167 (325)
T KOG0649|consen 88 WNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRNA 167 (325)
T ss_pred ehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEcCCcceeeeeeeccc
Confidence 764322 11111 1235889999999999999999999999999999999999999999999998554
Q ss_pred CCEEEEEe-CCeEEEEEcCCCCCceeEEEeec------C-CCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEEEecc
Q 003236 736 GEYLASVS-DELVRVWSIGSGSKGECIHELSC------T-GNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSA 807 (837)
Q Consensus 736 g~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~------~-~~~I~sv~fspdg~~L~sgs~dg~I~IwDl~s~~~~~l~~ 807 (837)
...+++|+ ||++||||+++.+....+...+. + +..|-+++. +..++++|+ ...+.+|+++..+......
T Consensus 168 ~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~--~edWlvCGg-Gp~lslwhLrsse~t~vfp 244 (325)
T KOG0649|consen 168 NGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAV--NEDWLVCGG-GPKLSLWHLRSSESTCVFP 244 (325)
T ss_pred CcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEec--cCceEEecC-CCceeEEeccCCCceEEEe
Confidence 55566666 99999999999843332222211 1 223444444 444555554 4579999999999887777
Q ss_pred CCCCeeEEEEeCCCCEEEEEECCCcEEEe
Q 003236 808 HDKLVSSLAASTVNGMVASASHDKCVKIW 836 (837)
Q Consensus 808 h~~~V~sla~spdg~~LaSgs~DG~I~IW 836 (837)
....|..+.|.. +.+++++....|.-|
T Consensus 245 ipa~v~~v~F~~--d~vl~~G~g~~v~~~ 271 (325)
T KOG0649|consen 245 IPARVHLVDFVD--DCVLIGGEGNHVQSY 271 (325)
T ss_pred cccceeEeeeec--ceEEEeccccceeee
Confidence 778888888874 446666655444443
|
|
| >KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.8e-15 Score=173.58 Aligned_cols=246 Identities=17% Similarity=0.237 Sum_probs=188.6
Q ss_pred CCCCeEEEEEcC-CCCEEEEEECCCcEEEEeCCCCeE--E----EEeccCCCCeEEEEEcCCC--CEEEEEeCCCeEEEE
Q 003236 554 STSKVESCHFSP-DGKLLATGGHDKKAVLWCTESFTV--K----STLEEHTQWITDVRFSPSL--SRLATSSADRTVRVW 624 (837)
Q Consensus 554 H~~~V~sl~fSp-dg~~Lasgs~Dg~I~VWd~~t~~~--~----~~l~~h~~~I~~l~fspdg--~~Latgs~Dg~I~IW 624 (837)
-...|+|++|+| +..+||.|..+|.|.+||+..+.. . .....|..+|+.+.|..+. .-|++++.||.|..|
T Consensus 241 ~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W 320 (555)
T KOG1587|consen 241 SPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSW 320 (555)
T ss_pred cCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCceEEEecCCcEeee
Confidence 456799999999 667889999999999999986554 2 2234699999999998754 449999999999999
Q ss_pred EcCCCCceeEEe-----e------ccccceEEEEEcCCCCeEEEEEeCCCcEEEEECC---CCe-----ee-eEEecCCC
Q 003236 625 DTENPDYSLRTF-----T------GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSIN---NGS-----CA-GVFKCQSG 684 (837)
Q Consensus 625 Dl~~~~~~~~~~-----~------~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~---t~~-----~i-~~~~~~~~ 684 (837)
+++.-..+.... . .-...+++++|.+.....|+.|+++|.|..-+-. ... .. ....+.+.
T Consensus 321 ~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~ 400 (555)
T KOG1587|consen 321 DTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGP 400 (555)
T ss_pred eccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCcccccccccccccccccCcc
Confidence 887533222111 1 1234688999999888899999999998873332 222 11 22234678
Q ss_pred eeEEEEecCCCEEEEEEcCCeEEEEECC-CCeEEEEEcCCCCCEEEEEEcCCCC-EEEEEe-CCeEEEEEcCCCCCceeE
Q 003236 685 ATQMRFQPRLGRILAAAIENYISILDVE-TQVCRLKLQGHKNQVHSVCWNTSGE-YLASVS-DELVRVWSIGSGSKGECI 761 (837)
Q Consensus 685 i~sl~~sp~g~~llags~dg~I~iwDl~-s~~~~~~l~~h~~~V~sl~~spdg~-~Lasgs-Dg~I~IwDl~s~~~~~~i 761 (837)
|+++.++|-+..++..+.|..|+||... ...++..+..+...|++++|||... .++++. ||.|.|||+..... .++
T Consensus 401 v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~-~Pv 479 (555)
T KOG1587|consen 401 VYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDDE-EPV 479 (555)
T ss_pred eEeeecCCCccceeeeeccceeEeccccCCCCcchhhhhccceeeeeEEcCcCceEEEEEcCCCceehhhhhcccc-CCc
Confidence 9999999988887777779999999988 6778888888888899999999875 455555 99999999986543 344
Q ss_pred EEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCC
Q 003236 762 HELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTEN 800 (837)
Q Consensus 762 ~~~~~~~~~I~sv~fspdg~~L~sgs~dg~I~IwDl~s~ 800 (837)
............+.|++.|+.|++|...|.+++|++...
T Consensus 480 ~s~~~~~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~~ 518 (555)
T KOG1587|consen 480 LSQKVCSPALTRVRWSPNGKLLAVGDANGTTHILKLSES 518 (555)
T ss_pred ccccccccccceeecCCCCcEEEEecCCCcEEEEEcCch
Confidence 444444666778888999999999999999999998643
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.9e-15 Score=166.92 Aligned_cols=240 Identities=16% Similarity=0.208 Sum_probs=183.5
Q ss_pred EEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEc
Q 003236 547 EFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDT 626 (837)
Q Consensus 547 ~~~~l~~H~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl 626 (837)
...++++|.+.|+|++|+.||+.+|+|+.|+.|.||+-.-. -+..+ .|.+.|.|+.|+|-...|++|+-. ..-+|..
T Consensus 45 llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klE-G~LkY-SH~D~IQCMsFNP~~h~LasCsLs-dFglWS~ 121 (1081)
T KOG1538|consen 45 LLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLE-GILKY-SHNDAIQCMSFNPITHQLASCSLS-DFGLWSP 121 (1081)
T ss_pred cccccccccceEEEEEEccCCceeccCCCceeEEEeccccc-ceeee-ccCCeeeEeecCchHHHhhhcchh-hccccCh
Confidence 46788999999999999999999999999999999985432 22233 599999999999999999999765 4678887
Q ss_pred CCCCceeEEeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeeEEe---cCCCeeEEEEecCC-----CEEE
Q 003236 627 ENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK---CQSGATQMRFQPRL-----GRIL 698 (837)
Q Consensus 627 ~~~~~~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~---~~~~i~sl~~sp~g-----~~ll 698 (837)
+.... ... .....|.+++|..||. +++.|-.+|+|.+-+-...+.+..-. .+++|.+++|+|.. ..++
T Consensus 122 ~qK~V--~K~-kss~R~~~CsWtnDGq-ylalG~~nGTIsiRNk~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~a 197 (1081)
T KOG1538|consen 122 EQKSV--SKH-KSSSRIICCSWTNDGQ-YLALGMFNGTISIRNKNGEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILA 197 (1081)
T ss_pred hhhhH--Hhh-hhheeEEEeeecCCCc-EEEEeccCceEEeecCCCCcceEEeCCCCCCCCceEEEecCCCCCCccceEE
Confidence 75332 111 2345788999999976 66688889999998665433333333 35679999999964 3466
Q ss_pred EEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEe
Q 003236 699 AAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFH 777 (837)
Q Consensus 699 ags~dg~I~iwDl~s~~~~~~l~~h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fs 777 (837)
+.....++.+|.+.. +.+..-+.-.-...|+.+.++|+|+..|+ |+.+++|.-. + ..+.++......|++++..
T Consensus 198 V~DW~qTLSFy~LsG-~~Igk~r~L~FdP~CisYf~NGEy~LiGGsdk~L~~fTR~-G---vrLGTvg~~D~WIWtV~~~ 272 (1081)
T KOG1538|consen 198 VADWGQTLSFYQLSG-KQIGKDRALNFDPCCISYFTNGEYILLGGSDKQLSLFTRD-G---VRLGTVGEQDSWIWTVQAK 272 (1081)
T ss_pred EEeccceeEEEEecc-eeecccccCCCCchhheeccCCcEEEEccCCCceEEEeec-C---eEEeeccccceeEEEEEEc
Confidence 666777777777653 33332223344567899999999999888 9999999643 2 4566666678899999999
Q ss_pred CCCCEEEEEEcCCeEEEEECC
Q 003236 778 PTFPSLLVIGCYETLELWNMT 798 (837)
Q Consensus 778 pdg~~L~sgs~dg~I~IwDl~ 798 (837)
|++.++++|+.||+|..|++.
T Consensus 273 PNsQ~v~~GCqDGTiACyNl~ 293 (1081)
T KOG1538|consen 273 PNSQYVVVGCQDGTIACYNLI 293 (1081)
T ss_pred cCCceEEEEEccCeeehhhhH
Confidence 999999999999999999873
|
|
| >KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown] | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.5e-14 Score=147.05 Aligned_cols=283 Identities=15% Similarity=0.216 Sum_probs=204.2
Q ss_pred EEEEecCCCCCeEEEEEcC--C-CCEEEEEEC----CCcEEEEeC--CCCeEEEEe-ccCCCCeEEEEEcCCCC-----E
Q 003236 547 EFQLIPASTSKVESCHFSP--D-GKLLATGGH----DKKAVLWCT--ESFTVKSTL-EEHTQWITDVRFSPSLS-----R 611 (837)
Q Consensus 547 ~~~~l~~H~~~V~sl~fSp--d-g~~Lasgs~----Dg~I~VWd~--~t~~~~~~l-~~h~~~I~~l~fspdg~-----~ 611 (837)
++..+.++- .++++.|+. + +.+||.|+. .++|.|..+ ++++.+..- ..|..+++.+.|.|+.. +
T Consensus 37 eiy~Y~ap~-~lya~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s~e~~~~a~fd~~YP~tK~~wiPd~~g~~pdl 115 (364)
T KOG0290|consen 37 EIYTYNAPW-PLYAMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQLDEDSGELVEDANFDHPYPVTKLMWIPDSKGVYPDL 115 (364)
T ss_pred eEEEecCCC-ceeeeccccCCCcceeEEEeeeccccCCeeEEEEEccCCCceeccCCCCCCCCccceEecCCccccCcch
Confidence 344444433 478888884 3 346888874 456666644 344444222 36889999999999753 4
Q ss_pred EEEEeCCCeEEEEEcCCCCcee--------EEeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCe----eeeEE
Q 003236 612 LATSSADRTVRVWDTENPDYSL--------RTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS----CAGVF 679 (837)
Q Consensus 612 Latgs~Dg~I~IWDl~~~~~~~--------~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~----~i~~~ 679 (837)
|||++ ..+|+|.+...+..+ ..-..+..++++++|+.-..+++.+++-|-++.|||++++. ....+
T Consensus 116 LATs~--D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLI 193 (364)
T KOG0290|consen 116 LATSS--DFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLI 193 (364)
T ss_pred hhccc--CeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecccCeEEEEEEeeccccceeeEEE
Confidence 55553 479999988432211 12234668999999999888899999999999999999873 34456
Q ss_pred ecCCCeeEEEEecCCC-EEEEEEcCCeEEEEECCCCeEEEEEc---CCCCCEEEEEEcCC-CCEEEEEe--CCeEEEEEc
Q 003236 680 KCQSGATQMRFQPRLG-RILAAAIENYISILDVETQVCRLKLQ---GHKNQVHSVCWNTS-GEYLASVS--DELVRVWSI 752 (837)
Q Consensus 680 ~~~~~i~sl~~sp~g~-~llags~dg~I~iwDl~s~~~~~~l~---~h~~~V~sl~~spd-g~~Lasgs--Dg~I~IwDl 752 (837)
.+..+|..++|...+. .+++++.||.|++||++..+.-..+. ....+...++|++. -+++|+-. ...|.|.|+
T Consensus 194 AHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDi 273 (364)
T KOG0290|consen 194 AHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDI 273 (364)
T ss_pred ecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEe
Confidence 6788999999998654 57778899999999999864333332 22457888999874 46777766 448999999
Q ss_pred CCCCCceeEEEeecCCCceEEEEEeCCC-CEEEEEEcCCeEEEEECCCCcE------EEeccCCCCeeEEEEeC-CCCEE
Q 003236 753 GSGSKGECIHELSCTGNKFHSCVFHPTF-PSLLVIGCYETLELWNMTENKT------LTLSAHDKLVSSLAAST-VNGMV 824 (837)
Q Consensus 753 ~s~~~~~~i~~~~~~~~~I~sv~fspdg-~~L~sgs~dg~I~IwDl~s~~~------~~l~~h~~~V~sla~sp-dg~~L 824 (837)
+... ..+..+..|...|..++|.|.. .+|++++.|..+.|||+..--. +......+.|+.+.|++ ....|
T Consensus 274 R~P~--tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~dPilay~a~~EVNqi~Ws~~~~Dwi 351 (364)
T KOG0290|consen 274 RVPC--TPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGEDPILAYTAGGEVNQIQWSSSQPDWI 351 (364)
T ss_pred cCCC--cceehhhcCcccccceEecCCCCceeeecCCcceEEEEecccccccCCCCchhhhhccceeeeeeecccCCCEE
Confidence 9764 6788899999999999999975 5688888888999999965332 22234678899999996 45677
Q ss_pred EEEECCCcEEE
Q 003236 825 ASASHDKCVKI 835 (837)
Q Consensus 825 aSgs~DG~I~I 835 (837)
+.+.. +++.|
T Consensus 352 ai~~~-kklei 361 (364)
T KOG0290|consen 352 AICFG-KKLEI 361 (364)
T ss_pred EEEec-CeeeE
Confidence 77654 44433
|
|
| >KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.1e-13 Score=145.40 Aligned_cols=233 Identities=16% Similarity=0.246 Sum_probs=174.2
Q ss_pred CCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCC--eEEEEEcCCCCce
Q 003236 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADR--TVRVWDTENPDYS 632 (837)
Q Consensus 555 ~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg--~I~IWDl~~~~~~ 632 (837)
...|..+.|..|...|.+|+.|| .++|+.+..............|..+-|+. .++|..+.+. .++++++.....
T Consensus 5 ~~ti~~~~~Nqd~~~lsvGs~~G-yk~~~~~~~~k~~~~~~~~~~IvEmLFSS--SLvaiV~~~qpr~Lkv~~~Kk~~~- 80 (391)
T KOG2110|consen 5 KPTINFIGFNQDSTLLSVGSKDG-YKIFSCSPFEKCFSKDTEGVSIVEMLFSS--SLVAIVSIKQPRKLKVVHFKKKTT- 80 (391)
T ss_pred CcceeeeeeccceeEEEccCCCc-eeEEecCchHHhhcccCCCeEEEEeeccc--ceeEEEecCCCceEEEEEcccCce-
Confidence 34577788999999999999987 67888776554333333344566666664 4666665543 588998886443
Q ss_pred eEEeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeeEEecC----CCeeEEEEecCCCEEEEEE--cCCeE
Q 003236 633 LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ----SGATQMRFQPRLGRILAAA--IENYI 706 (837)
Q Consensus 633 ~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~~----~~i~sl~~sp~g~~llags--~dg~I 706 (837)
+..+. ....|.++.++.+ +++ .+-. ..|+|||+++.+.+.++... .++..+.++..+.+++.-+ ..|.|
T Consensus 81 ICe~~-fpt~IL~VrmNr~--RLv-V~Le-e~IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV 155 (391)
T KOG2110|consen 81 ICEIF-FPTSILAVRMNRK--RLV-VCLE-ESIYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDV 155 (391)
T ss_pred EEEEe-cCCceEEEEEccc--eEE-EEEc-ccEEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceE
Confidence 33332 4567999998854 344 4443 34999999999999888753 2355555555556776543 35899
Q ss_pred EEEECCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEe-CC-eEEEEEcCCCCCceeEEEeecC--CCceEEEEEeCCCCE
Q 003236 707 SILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DE-LVRVWSIGSGSKGECIHELSCT--GNKFHSCVFHPTFPS 782 (837)
Q Consensus 707 ~iwDl~s~~~~~~l~~h~~~V~sl~~spdg~~Lasgs-Dg-~I~IwDl~s~~~~~~i~~~~~~--~~~I~sv~fspdg~~ 782 (837)
.+||+.+-+.+..+..|++.+-+++|+++|.+||+++ .| .||||.+.++ ..+.+|... ...|.+++|+|++.+
T Consensus 156 ~l~d~~nl~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G---~kl~eFRRG~~~~~IySL~Fs~ds~~ 232 (391)
T KOG2110|consen 156 VLFDTINLQPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEG---QKLYEFRRGTYPVSIYSLSFSPDSQF 232 (391)
T ss_pred EEEEcccceeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCc---cEeeeeeCCceeeEEEEEEECCCCCe
Confidence 9999999999999999999999999999999999999 44 7999999988 555555432 356899999999999
Q ss_pred EEEEEcCCeEEEEECCC
Q 003236 783 LLVIGCYETLELWNMTE 799 (837)
Q Consensus 783 L~sgs~dg~I~IwDl~s 799 (837)
|++.+..++|+||.++.
T Consensus 233 L~~sS~TeTVHiFKL~~ 249 (391)
T KOG2110|consen 233 LAASSNTETVHIFKLEK 249 (391)
T ss_pred EEEecCCCeEEEEEecc
Confidence 99999999999998854
|
|
| >KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.66 E-value=2.7e-14 Score=147.28 Aligned_cols=271 Identities=15% Similarity=0.205 Sum_probs=201.8
Q ss_pred CCeEEEEEcCCCCEEEE-EECCCcEEEEeCCCCeEEEEeccCCCCeEEEEEcCCCCE-EEEEeCCCeEEEEEcCCCCcee
Q 003236 556 SKVESCHFSPDGKLLAT-GGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSR-LATSSADRTVRVWDTENPDYSL 633 (837)
Q Consensus 556 ~~V~sl~fSpdg~~Las-gs~Dg~I~VWd~~t~~~~~~l~~h~~~I~~l~fspdg~~-Latgs~Dg~I~IWDl~~~~~~~ 633 (837)
+.|.-+.|..|..++++ ...|+.|.+|++...+-...+......+.+++|+|||+. |.+...|-.|.||.+.+.+...
T Consensus 49 dki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~ 128 (447)
T KOG4497|consen 49 DKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCKIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYL 128 (447)
T ss_pred HHhhheeeeccceeeeeeeeccceEEEEEeecceeEEEeccCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEE
Confidence 56778888888776554 467889999999988888889888899999999999955 5567779999999999866433
Q ss_pred EEeeccccceEEEEEcCCCCeEEEEEeC-----------------------------------CCcEEEEECCCCeeeeE
Q 003236 634 RTFTGHSTTVMSLDFHPSKEDLLCSCDN-----------------------------------NSEIRYWSINNGSCAGV 678 (837)
Q Consensus 634 ~~~~~h~~~V~sl~fspdg~~llasgs~-----------------------------------Dg~I~vwDl~t~~~i~~ 678 (837)
.... ...+..++|+|+|.+..+..-. +..+.+||---.-.+..
T Consensus 129 ~~~p--K~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~Leykv~a 206 (447)
T KOG4497|consen 129 LPHP--KTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEYKVYA 206 (447)
T ss_pred eccc--ccCceeEEECCCCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEEEEecchhhheeee
Confidence 3222 3446888999998754432211 23455555433333344
Q ss_pred EecCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEE---------------------------------------
Q 003236 679 FKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLK--------------------------------------- 719 (837)
Q Consensus 679 ~~~~~~i~sl~~sp~g~~llags~dg~I~iwDl~s~~~~~~--------------------------------------- 719 (837)
+...-++..+.|+|.+.++++|+.|+.++|.+--+.+...+
T Consensus 207 Ye~~lG~k~v~wsP~~qflavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a 286 (447)
T KOG4497|consen 207 YERGLGLKFVEWSPCNQFLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEA 286 (447)
T ss_pred eeeccceeEEEeccccceEEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCcccc
Confidence 45557889999999999999999999888765332221100
Q ss_pred ---------------------Ec------CCCCCEEEEEEcCCCCEEEEEeCC---eEEEEEcCCCCCceeEEEeecCCC
Q 003236 720 ---------------------LQ------GHKNQVHSVCWNTSGEYLASVSDE---LVRVWSIGSGSKGECIHELSCTGN 769 (837)
Q Consensus 720 ---------------------l~------~h~~~V~sl~~spdg~~LasgsDg---~I~IwDl~s~~~~~~i~~~~~~~~ 769 (837)
++ ...-.+.-++|++|..|+++-.|. .+-+||++.. .++.+-....
T Consensus 287 ~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l----~l~avLiQk~ 362 (447)
T KOG4497|consen 287 HIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQNL----KLHAVLIQKH 362 (447)
T ss_pred CccccchhhhhhhhcceeeecccCCCCCCCcccccceeeecCCceEEeeecCCCCceEEEEechhh----hhhhhhhhcc
Confidence 00 011234568999999999998755 7999999875 2333344567
Q ss_pred ceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEEEeccCCCCeeEEEEeCCCCEEEEEECCCc
Q 003236 770 KFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKC 832 (837)
Q Consensus 770 ~I~sv~fspdg~~L~sgs~dg~I~IwDl~s~~~~~l~~h~~~V~sla~spdg~~LaSgs~DG~ 832 (837)
+|....|+|....|+++.....+++|.......+......-.|..+.|.-+|..++.++.|..
T Consensus 363 piraf~WdP~~prL~vctg~srLY~W~psg~~~V~vP~~GF~i~~l~W~~~g~~i~l~~kDaf 425 (447)
T KOG4497|consen 363 PIRAFEWDPGRPRLVVCTGKSRLYFWAPSGPRVVGVPKKGFNIQKLQWLQPGEFIVLCGKDAF 425 (447)
T ss_pred ceeEEEeCCCCceEEEEcCCceEEEEcCCCceEEecCCCCceeeeEEecCCCcEEEEEcCCce
Confidence 899999999999999999999999999988777777777789999999999999999998864
|
|
| >PRK03629 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=4.2e-14 Score=161.90 Aligned_cols=234 Identities=13% Similarity=0.111 Sum_probs=171.3
Q ss_pred CcEEEEeCCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeC---CCeEEEEEcCCCCceeEEeeccccceEEEEEcCCCC
Q 003236 577 KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA---DRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKE 653 (837)
Q Consensus 577 g~I~VWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~---Dg~I~IWDl~~~~~~~~~~~~h~~~V~sl~fspdg~ 653 (837)
..|.+||.+..... .+..+...+.+.+|+|||+.|+..+. +..|++||+.+++. ..+......+..+.|+|||.
T Consensus 179 ~~l~~~d~dg~~~~-~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~--~~l~~~~~~~~~~~~SPDG~ 255 (429)
T PRK03629 179 YELRVSDYDGYNQF-VVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAV--RQVASFPRHNGAPAFSPDGS 255 (429)
T ss_pred eeEEEEcCCCCCCE-EeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCe--EEccCCCCCcCCeEECCCCC
Confidence 36889998765443 34456778999999999999987653 45799999987653 23333334456789999999
Q ss_pred eEEEEEeCCC--cEEEEECCCCeeeeEEecCCCeeEEEEecCCCEEEEEEcC-C--eEEEEECCCCeEEEEEcCCCCCEE
Q 003236 654 DLLCSCDNNS--EIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIE-N--YISILDVETQVCRLKLQGHKNQVH 728 (837)
Q Consensus 654 ~llasgs~Dg--~I~vwDl~t~~~i~~~~~~~~i~sl~~sp~g~~llags~d-g--~I~iwDl~s~~~~~~l~~h~~~V~ 728 (837)
.++++.+.+| .|++||+.+++..........+....|+|+++.|+.++.+ + .|+++|+.++... .+..+...+.
T Consensus 256 ~La~~~~~~g~~~I~~~d~~tg~~~~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~-~lt~~~~~~~ 334 (429)
T PRK03629 256 KLAFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQ-RITWEGSQNQ 334 (429)
T ss_pred EEEEEEcCCCCcEEEEEECCCCCEEEccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeE-EeecCCCCcc
Confidence 8887766555 5999999988776665555667889999999998877764 3 5666677776443 3333444566
Q ss_pred EEEEcCCCCEEEEEe--C--CeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCC---eEEEEECCCCc
Q 003236 729 SVCWNTSGEYLASVS--D--ELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYE---TLELWNMTENK 801 (837)
Q Consensus 729 sl~~spdg~~Lasgs--D--g~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fspdg~~L~sgs~dg---~I~IwDl~s~~ 801 (837)
+.+|+|||++|+..+ + ..|.+||+.++.. ..+.. ........|+|||+.|++++.++ .++++++....
T Consensus 335 ~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~----~~Lt~-~~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~~G~~ 409 (429)
T PRK03629 335 DADVSSDGKFMVMVSSNGGQQHIAKQDLATGGV----QVLTD-TFLDETPSIAPNGTMVIYSSSQGMGSVLNLVSTDGRF 409 (429)
T ss_pred CEEECCCCCEEEEEEccCCCceEEEEECCCCCe----EEeCC-CCCCCCceECCCCCEEEEEEcCCCceEEEEEECCCCC
Confidence 789999999998766 3 2688999987632 22221 12234678999999999998876 47888987777
Q ss_pred EEEeccCCCCeeEEEEeC
Q 003236 802 TLTLSAHDKLVSSLAAST 819 (837)
Q Consensus 802 ~~~l~~h~~~V~sla~sp 819 (837)
...+..|.+.+...+|+|
T Consensus 410 ~~~l~~~~~~~~~p~Wsp 427 (429)
T PRK03629 410 KARLPATDGQVKFPAWSP 427 (429)
T ss_pred eEECccCCCCcCCcccCC
Confidence 777878888999999987
|
|
| >KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.2e-14 Score=149.79 Aligned_cols=226 Identities=15% Similarity=0.203 Sum_probs=173.2
Q ss_pred ecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCC---CeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcC
Q 003236 551 IPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES---FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTE 627 (837)
Q Consensus 551 l~~H~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t---~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~ 627 (837)
+.--..+|+|.+|++|+..+|++.....|.||.... .+...++..|...|++|+|.|..+.|++|+.|..-+||...
T Consensus 6 ~~~~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~ 85 (361)
T KOG1523|consen 6 FHRLLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQP 85 (361)
T ss_pred eeeccCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccC
Confidence 334457899999999999999999999999998764 45778999999999999999999999999999999999984
Q ss_pred -CCCc-eeEEeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeeE-----EecCCCeeEEEEecCCCEEEEE
Q 003236 628 -NPDY-SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGV-----FKCQSGATQMRFQPRLGRILAA 700 (837)
Q Consensus 628 -~~~~-~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~-----~~~~~~i~sl~~sp~g~~llag 700 (837)
.++. +...+..++..++++.|+|.++ .|++|+....|.||-++...--.+ ....+.|.++.|+|++-.+++|
T Consensus 86 ~~~~WkptlvLlRiNrAAt~V~WsP~en-kFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLlaaG 164 (361)
T KOG1523|consen 86 SGGTWKPTLVLLRINRAATCVKWSPKEN-KFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAAG 164 (361)
T ss_pred CCCeeccceeEEEeccceeeEeecCcCc-eEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcceeccc
Confidence 3332 3456677899999999999965 666888888898887765443221 2234678999999999999999
Q ss_pred EcCCeEEEEECC-----C-------------CeEEEEEcCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeE
Q 003236 701 AIENYISILDVE-----T-------------QVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECI 761 (837)
Q Consensus 701 s~dg~I~iwDl~-----s-------------~~~~~~l~~h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i 761 (837)
+.|+..+||..- . |..+.++....+.|..+.|+|+|..|+-.+ |..|.+-|...... .+
T Consensus 165 s~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~p~~--~v 242 (361)
T KOG1523|consen 165 STDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAGPSE--RV 242 (361)
T ss_pred ccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecCCCceEEeecCCCch--hc
Confidence 999999888532 1 122333434567899999999999999887 99999999876531 22
Q ss_pred EEeecCCCceEEEEEeCC
Q 003236 762 HELSCTGNKFHSCVFHPT 779 (837)
Q Consensus 762 ~~~~~~~~~I~sv~fspd 779 (837)
.......-+..++.|-.+
T Consensus 243 ~~~~~~~lP~ls~~~ise 260 (361)
T KOG1523|consen 243 QSVATAQLPLLSVSWISE 260 (361)
T ss_pred cchhhccCCceeeEeecC
Confidence 222223355556655444
|
|
| >PRK01742 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=7.2e-15 Score=168.36 Aligned_cols=220 Identities=17% Similarity=0.194 Sum_probs=158.5
Q ss_pred EEecCCCCCeEEEEEcCCCCEEEEEECC---CcEEEEeCCCCeEE--EEeccCCCCeEEEEEcCCCCEEEEEe-CCCeEE
Q 003236 549 QLIPASTSKVESCHFSPDGKLLATGGHD---KKAVLWCTESFTVK--STLEEHTQWITDVRFSPSLSRLATSS-ADRTVR 622 (837)
Q Consensus 549 ~~l~~H~~~V~sl~fSpdg~~Lasgs~D---g~I~VWd~~t~~~~--~~l~~h~~~I~~l~fspdg~~Latgs-~Dg~I~ 622 (837)
..+..|...|.+.+|||||+.|++++.+ ..|++||+.+++.. ..+.+ ...+++|+|||+.|++++ .+|.+.
T Consensus 197 ~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g---~~~~~~wSPDG~~La~~~~~~g~~~ 273 (429)
T PRK01742 197 FIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRG---HNGAPAFSPDGSRLAFASSKDGVLN 273 (429)
T ss_pred eEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCC---ccCceeECCCCCEEEEEEecCCcEE
Confidence 4456788889999999999999988754 36999999887543 33333 345789999999888765 678665
Q ss_pred EE--EcCCCCceeEEeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCC-eeeeEEecCCCeeEEEEecCCCEEEE
Q 003236 623 VW--DTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNG-SCAGVFKCQSGATQMRFQPRLGRILA 699 (837)
Q Consensus 623 IW--Dl~~~~~~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~-~~i~~~~~~~~i~sl~~sp~g~~lla 699 (837)
|| |+.++. ...+..+...+.+..|+|++..+++++..++.+.||++... .....+.. .. .+..|+|+++.|++
T Consensus 274 Iy~~d~~~~~--~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l~~-~~-~~~~~SpDG~~ia~ 349 (429)
T PRK01742 274 IYVMGANGGT--PSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLVGG-RG-YSAQISADGKTLVM 349 (429)
T ss_pred EEEEECCCCC--eEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEecC-CC-CCccCCCCCCEEEE
Confidence 55 555443 45566677778899999999988877777888888876432 22223322 22 56789999999988
Q ss_pred EEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeC
Q 003236 700 AAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHP 778 (837)
Q Consensus 700 gs~dg~I~iwDl~s~~~~~~l~~h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fsp 778 (837)
++.++ +.+||+.++........+ ...++.|+|||++|+.++ ++.+.+|++.+.. ...+..+..+.+.+..++|+|
T Consensus 350 ~~~~~-i~~~Dl~~g~~~~lt~~~--~~~~~~~sPdG~~i~~~s~~g~~~~l~~~~~~-G~~~~~l~~~~g~~~~p~wsp 425 (429)
T PRK01742 350 INGDN-VVKQDLTSGSTEVLSSTF--LDESPSISPNGIMIIYSSTQGLGKVLQLVSAD-GRFKARLPGSDGQVKFPAWSP 425 (429)
T ss_pred EcCCC-EEEEECCCCCeEEecCCC--CCCCceECCCCCEEEEEEcCCCceEEEEEECC-CCceEEccCCCCCCCCcccCC
Confidence 87754 666999988655333222 345688999999999988 8877877764211 156677777778888899998
Q ss_pred C
Q 003236 779 T 779 (837)
Q Consensus 779 d 779 (837)
-
T Consensus 426 ~ 426 (429)
T PRK01742 426 Y 426 (429)
T ss_pred C
Confidence 5
|
|
| >KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=99.66 E-value=4.7e-14 Score=148.09 Aligned_cols=230 Identities=14% Similarity=0.181 Sum_probs=180.4
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeEEeeccccceEEEEEcCCCCeEEEEEeCC--CcEEEEECCCCe
Q 003236 597 TQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN--SEIRYWSINNGS 674 (837)
Q Consensus 597 ~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~sl~fspdg~~llasgs~D--g~I~vwDl~t~~ 674 (837)
...+..+.|..+...|..|+.|| .++|+.+.-.. ..........|..+-|+.. +++..+.+ ..+++++++.+.
T Consensus 5 ~~ti~~~~~Nqd~~~lsvGs~~G-yk~~~~~~~~k-~~~~~~~~~~IvEmLFSSS---LvaiV~~~qpr~Lkv~~~Kk~~ 79 (391)
T KOG2110|consen 5 KPTINFIGFNQDSTLLSVGSKDG-YKIFSCSPFEK-CFSKDTEGVSIVEMLFSSS---LVAIVSIKQPRKLKVVHFKKKT 79 (391)
T ss_pred CcceeeeeeccceeEEEccCCCc-eeEEecCchHH-hhcccCCCeEEEEeecccc---eeEEEecCCCceEEEEEcccCc
Confidence 34577788999999999999998 57888775443 1111222344566667633 55544433 459999999999
Q ss_pred eeeEEecCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEcC---CCCCEEEEEEcCCCCEEEEEe---CCeEE
Q 003236 675 CAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQG---HKNQVHSVCWNTSGEYLASVS---DELVR 748 (837)
Q Consensus 675 ~i~~~~~~~~i~sl~~sp~g~~llags~dg~I~iwDl~s~~~~~~l~~---h~~~V~sl~~spdg~~Lasgs---Dg~I~ 748 (837)
.+..+.....|.++.++.+ +++++-.+. |+|||+++.+.+.++.. +...+.++.+++.+.||+.-+ .|.|.
T Consensus 80 ~ICe~~fpt~IL~VrmNr~--RLvV~Lee~-IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~ 156 (391)
T KOG2110|consen 80 TICEIFFPTSILAVRMNRK--RLVVCLEES-IYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVV 156 (391)
T ss_pred eEEEEecCCceEEEEEccc--eEEEEEccc-EEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceEE
Confidence 9999999999999999764 555555444 99999999999888764 444566777777777998754 68999
Q ss_pred EEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCC-eEEEEECCCCcEE-EeccC--CCCeeEEEEeCCCCEE
Q 003236 749 VWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYE-TLELWNMTENKTL-TLSAH--DKLVSSLAASTVNGMV 824 (837)
Q Consensus 749 IwDl~s~~~~~~i~~~~~~~~~I~sv~fspdg~~L~sgs~dg-~I~IwDl~s~~~~-~l~~h--~~~V~sla~spdg~~L 824 (837)
|||+.+- ..+..+..|.+.+-+++|+++|.+|++++..| .|+||.+.+|..+ .+... ...|.+++|++++.+|
T Consensus 157 l~d~~nl---~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~~L 233 (391)
T KOG2110|consen 157 LFDTINL---QPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQFL 233 (391)
T ss_pred EEEcccc---eeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCCCeE
Confidence 9999887 78888899999999999999999999999999 6899999999887 33322 3468899999999999
Q ss_pred EEEECCCcEEEeC
Q 003236 825 ASASHDKCVKIWK 837 (837)
Q Consensus 825 aSgs~DG~I~IWd 837 (837)
++.+..++|+||+
T Consensus 234 ~~sS~TeTVHiFK 246 (391)
T KOG2110|consen 234 AASSNTETVHIFK 246 (391)
T ss_pred EEecCCCeEEEEE
Confidence 9999999999985
|
|
| >PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.8e-13 Score=152.79 Aligned_cols=286 Identities=17% Similarity=0.173 Sum_probs=186.3
Q ss_pred eEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEe-CCCeEEEE
Q 003236 546 TEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSS-ADRTVRVW 624 (837)
Q Consensus 546 ~~~~~l~~H~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs-~Dg~I~IW 624 (837)
+.+..+......-..+.|+|||+++++++.||.|.++|+.+.+.+.++.... ...++++++||+++++++ .++.+.|+
T Consensus 27 ~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~-~~~~i~~s~DG~~~~v~n~~~~~v~v~ 105 (369)
T PF02239_consen 27 KVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVGG-NPRGIAVSPDGKYVYVANYEPGTVSVI 105 (369)
T ss_dssp SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-SS-EEEEEEE--TTTEEEEEEEETTEEEEE
T ss_pred eEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecCC-CcceEEEcCCCCEEEEEecCCCceeEe
Confidence 3455555544434457899999999999999999999999999999987544 468899999999998776 58999999
Q ss_pred EcCCCCceeEEeec-------cccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeee--eEEecCCCeeEEEEecCCC
Q 003236 625 DTENPDYSLRTFTG-------HSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCA--GVFKCQSGATQMRFQPRLG 695 (837)
Q Consensus 625 Dl~~~~~~~~~~~~-------h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i--~~~~~~~~i~sl~~sp~g~ 695 (837)
|..+.+. +..+.. ....+..|..++.+..++++.-+.+.|.+.|....+.+ ..+..........|+|+++
T Consensus 106 D~~tle~-v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~~g~~~~D~~~dpdgr 184 (369)
T PF02239_consen 106 DAETLEP-VKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIKVGRFPHDGGFDPDGR 184 (369)
T ss_dssp ETTT--E-EEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEEEEE--TTEEEEEE-TTSS
T ss_pred ccccccc-eeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccceeeecccccccccccCcccc
Confidence 9998664 444432 23467788888887777767666789999998765533 4455566788899999999
Q ss_pred EEEEEEc-CCeEEEEECCCCeEEEEEcC----CCCCEEEEE-------Ec--CCCCEE-EEEeCCeEEEEEcCCCCCcee
Q 003236 696 RILAAAI-ENYISILDVETQVCRLKLQG----HKNQVHSVC-------WN--TSGEYL-ASVSDELVRVWSIGSGSKGEC 760 (837)
Q Consensus 696 ~llags~-dg~I~iwDl~s~~~~~~l~~----h~~~V~sl~-------~s--pdg~~L-asgsDg~I~IwDl~s~~~~~~ 760 (837)
+++++.. ++.|.++|.++++.+..+.. |..++..+- |. ..+.+. ...+.+.+.+||..+. +.
T Consensus 185 y~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~w---kv 261 (369)
T PF02239_consen 185 YFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYAW---KV 261 (369)
T ss_dssp EEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSSEEEEEE--TTT-STTTBT---SE
T ss_pred eeeecccccceeEEEeeccceEEEEeeccccccccccccccCCCcceEEeeccccceecccccCCccccchhhcC---eE
Confidence 9887654 68999999999987776542 444444331 21 122222 2222445556666665 67
Q ss_pred EEEeecCCCceEEEEEeCCCCEEEEE---E-cCCeEEEEECCCCcEEEecc--CCCCeeEEEEeCCCCEEEEEECC--Cc
Q 003236 761 IHELSCTGNKFHSCVFHPTFPSLLVI---G-CYETLELWNMTENKTLTLSA--HDKLVSSLAASTVNGMVASASHD--KC 832 (837)
Q Consensus 761 i~~~~~~~~~I~sv~fspdg~~L~sg---s-~dg~I~IwDl~s~~~~~l~~--h~~~V~sla~spdg~~LaSgs~D--G~ 832 (837)
+..+...+.. .-+..+|+++++++. + ..+.|.++|..+.+.+.... ....+..+.|+++|+.+..+..| |.
T Consensus 262 v~~I~~~G~g-lFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~~~~~~~~~h~ef~~dG~~v~vS~~~~~~~ 340 (369)
T PF02239_consen 262 VKTIPTQGGG-LFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTLKVVKTITPGPGKRVVHMEFNPDGKEVWVSVWDGNGA 340 (369)
T ss_dssp EEEEE-SSSS---EE--TT-SEEEEE-TT-SSHT-EEEEECCGTEEEE-HHHHHT--EEEEEE-TTSSEEEEEEE--TTE
T ss_pred EEEEECCCCc-ceeecCCCCccEEeeccCCCCCceEEEEECcCcceeEEEeccCCCcEeccEECCCCCEEEEEEecCCCE
Confidence 7888877777 778889999999998 3 34699999999998764332 22359999999999976665544 36
Q ss_pred EEEeC
Q 003236 833 VKIWK 837 (837)
Q Consensus 833 I~IWd 837 (837)
|.|||
T Consensus 341 i~v~D 345 (369)
T PF02239_consen 341 IVVYD 345 (369)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 99886
|
... |
| >KOG2321 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.65 E-value=2.3e-14 Score=157.07 Aligned_cols=277 Identities=14% Similarity=0.167 Sum_probs=203.7
Q ss_pred CCCCCeEEEEEcCCCCE-EEEEECCCcEEEEeCCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCc
Q 003236 553 ASTSKVESCHFSPDGKL-LATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDY 631 (837)
Q Consensus 553 ~H~~~V~sl~fSpdg~~-Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~~~~ 631 (837)
+|....+.|..+|||+| +|+|...-.|++||+....+...-.-....|.-.-++.|-..++.-..|.+|-+...-....
T Consensus 49 e~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak~G~hy 128 (703)
T KOG2321|consen 49 EMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAKYGRHY 128 (703)
T ss_pred CCccccceeEecCCCcEEEEecccCCceEEEEcccceeeeeecccccceeEEEeccchhhheEeecCceeeehhhcCeee
Confidence 57777889999999997 56788888999999987666544333345566666666656666666787777654432111
Q ss_pred eeEEeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeeEEecC-CCeeEEEEecCCCEEEEEEcCCeEEEEE
Q 003236 632 SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ-SGATQMRFQPRLGRILAAAIENYISILD 710 (837)
Q Consensus 632 ~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~~-~~i~sl~~sp~g~~llags~dg~I~iwD 710 (837)
.++ -...-.+++++.-...+++.| ....|+-++++.|..+..+... ++++++.+++..+.|++|+.+|.|..||
T Consensus 129 ~~R----IP~~GRDm~y~~~scDly~~g-sg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwD 203 (703)
T KOG2321|consen 129 RTR----IPKFGRDMKYHKPSCDLYLVG-SGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWD 203 (703)
T ss_pred eee----cCcCCccccccCCCccEEEee-cCcceEEEEccccccccccccccccceeeeecCccceEEecccCceEEEec
Confidence 111 122334566664444455444 4668999999999999988875 7799999999999999999999999999
Q ss_pred CCCCeEEEEEc------CCCC-----CEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeC
Q 003236 711 VETQVCRLKLQ------GHKN-----QVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHP 778 (837)
Q Consensus 711 l~s~~~~~~l~------~h~~-----~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fsp 778 (837)
.++...+..+. .|.+ .|+++.|+.+|-.+++|+ +|.|.|||+++.. ..+..-.....+|..+.|.+
T Consensus 204 pR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~--pl~~kdh~~e~pi~~l~~~~ 281 (703)
T KOG2321|consen 204 PRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASK--PLLVKDHGYELPIKKLDWQD 281 (703)
T ss_pred chhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCC--ceeecccCCccceeeecccc
Confidence 99876555443 2333 499999999999999998 9999999999874 22333334456788889977
Q ss_pred CCCE-EEEEEcCCeEEEEECCCCcEEEeccCCCCeeEEEEeCCCCEEEEEECCCcEEEe
Q 003236 779 TFPS-LLVIGCYETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIW 836 (837)
Q Consensus 779 dg~~-L~sgs~dg~I~IwDl~s~~~~~l~~h~~~V~sla~spdg~~LaSgs~DG~I~IW 836 (837)
.+.. .++......++|||-.+|+..........|+.+|+-|++.++++|-+++.+..|
T Consensus 282 ~~~q~~v~S~Dk~~~kiWd~~~Gk~~asiEpt~~lND~C~~p~sGm~f~Ane~~~m~~y 340 (703)
T KOG2321|consen 282 TDQQNKVVSMDKRILKIWDECTGKPMASIEPTSDLNDFCFVPGSGMFFTANESSKMHTY 340 (703)
T ss_pred cCCCceEEecchHHhhhcccccCCceeeccccCCcCceeeecCCceEEEecCCCcceeE
Confidence 6433 333334448999999999999777777789999999999999999888776543
|
|
| >KOG1310 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.65 E-value=9.1e-16 Score=166.73 Aligned_cols=238 Identities=17% Similarity=0.265 Sum_probs=171.2
Q ss_pred eEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEe-ccCCCCeEEEEEcC--CCCEEEEEeCCCeEE
Q 003236 546 TEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTL-EEHTQWITDVRFSP--SLSRLATSSADRTVR 622 (837)
Q Consensus 546 ~~~~~l~~H~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l-~~h~~~I~~l~fsp--dg~~Latgs~Dg~I~ 622 (837)
.....+.||++-|.|+.|+.||.+|++|+.|-.+.|||.-..+++..+ .+|...|.++.|.| +.+.+++|..|..|+
T Consensus 41 ~lE~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~ 120 (758)
T KOG1310|consen 41 DLEAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIK 120 (758)
T ss_pred chhhhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEE
Confidence 344668899999999999999999999999999999999888888766 58999999999999 467899999999999
Q ss_pred EEEcCC---------CCceeEEeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeee-eEEec----------C
Q 003236 623 VWDTEN---------PDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCA-GVFKC----------Q 682 (837)
Q Consensus 623 IWDl~~---------~~~~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i-~~~~~----------~ 682 (837)
+||+.. .+.....+..|...|..|+..|++.+.|.++++||+|+-+|++..... ..... -
T Consensus 121 lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~l 200 (758)
T KOG1310|consen 121 LFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQL 200 (758)
T ss_pred EEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchhh
Confidence 999985 233456677899999999999999899999999999999999863211 11100 1
Q ss_pred CCeeEEEEecCCC-EEEEEEcCCeEEEEECCCCeEEEEEc-CC----CCCEEEEE-EcCCCCEEEEEeCCeEEEEEcCCC
Q 003236 683 SGATQMRFQPRLG-RILAAAIENYISILDVETQVCRLKLQ-GH----KNQVHSVC-WNTSGEYLASVSDELVRVWSIGSG 755 (837)
Q Consensus 683 ~~i~sl~~sp~g~-~llags~dg~I~iwDl~s~~~~~~l~-~h----~~~V~sl~-~spdg~~LasgsDg~I~IwDl~s~ 755 (837)
-...|+.++|... +|++|+.|-..++||.+...+...-. .+ .....|+. |+|.+. ...+|.+..
T Consensus 201 ielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hl---kn~~gn~~~------ 271 (758)
T KOG1310|consen 201 IELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHL---KNSQGNLDR------ 271 (758)
T ss_pred heeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccc---cCccccccc------
Confidence 2467889999654 57778888999999965321110000 00 01111221 222211 000111100
Q ss_pred CCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE
Q 003236 756 SKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL 803 (837)
Q Consensus 756 ~~~~~i~~~~~~~~~I~sv~fspdg~~L~sgs~dg~I~IwDl~s~~~~ 803 (837)
....++-+.|+|+|..|++.-....|+++|+..++..
T Consensus 272 -----------~~~~~t~vtfnpNGtElLvs~~gEhVYlfdvn~~~~~ 308 (758)
T KOG1310|consen 272 -----------YITCCTYVTFNPNGTELLVSWGGEHVYLFDVNEDKSP 308 (758)
T ss_pred -----------ceeeeEEEEECCCCcEEEEeeCCeEEEEEeecCCCCc
Confidence 0112456789999988888887789999999877644
|
|
| >KOG2139 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.64 E-value=6.1e-14 Score=146.49 Aligned_cols=277 Identities=15% Similarity=0.235 Sum_probs=193.9
Q ss_pred CCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEec-cCCCCeEEEEEcCC-CCEEEEEeCCCeEEEEEcCCCCc--
Q 003236 556 SKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLE-EHTQWITDVRFSPS-LSRLATSSADRTVRVWDTENPDY-- 631 (837)
Q Consensus 556 ~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~-~h~~~I~~l~fspd-g~~Latgs~Dg~I~IWDl~~~~~-- 631 (837)
-.+..++|++.-..+|++..|-.|++||-.. ++...++ .....|+|++|.|. ++.|++|+..| |.||..+....
T Consensus 99 ~dlr~~aWhqH~~~fava~nddvVriy~kss-t~pt~Lks~sQrnvtclawRPlsaselavgCr~g-IciW~~s~tln~~ 176 (445)
T KOG2139|consen 99 IDLRGVAWHQHIIAFAVATNDDVVRIYDKSS-TCPTKLKSVSQRNVTCLAWRPLSASELAVGCRAG-ICIWSDSRTLNAN 176 (445)
T ss_pred cceeeEeechhhhhhhhhccCcEEEEeccCC-CCCceecchhhcceeEEEeccCCcceeeeeecce-eEEEEcCcccccc
Confidence 4577899999777789999999999999666 5555554 23467999999995 55677776655 89998763211
Q ss_pred -----------eeEEeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeeEE-ecCCCeeEEEEecCCCEEEE
Q 003236 632 -----------SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVF-KCQSGATQMRFQPRLGRILA 699 (837)
Q Consensus 632 -----------~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~-~~~~~i~sl~~sp~g~~lla 699 (837)
.+....+| .+|+++.|.+||..++-++-.|..|.|||..++.++... ...+++.-+.|+||+.+|++
T Consensus 177 r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~lfa 255 (445)
T KOG2139|consen 177 RNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVLFA 255 (445)
T ss_pred cccccccccchhheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcCCCCEEEE
Confidence 12233455 689999999998866655556789999999999888776 45678999999999999999
Q ss_pred EEcCCeEEEEECC-CCeEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCeEEEEEcCCCCCce------------eEEEee-
Q 003236 700 AAIENYISILDVE-TQVCRLKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGE------------CIHELS- 765 (837)
Q Consensus 700 gs~dg~I~iwDl~-s~~~~~~l~~h~~~V~sl~~spdg~~LasgsDg~I~IwDl~s~~~~~------------~i~~~~- 765 (837)
+.-|+..++|... +..+..-.. ..+.|...+|+|+|.+|..+..+.-++|.+....+.. .+..+.
T Consensus 256 At~davfrlw~e~q~wt~erw~l-gsgrvqtacWspcGsfLLf~~sgsp~lysl~f~~~~~~~~~~~~~k~~lliaDL~e 334 (445)
T KOG2139|consen 256 ATCDAVFRLWQENQSWTKERWIL-GSGRVQTACWSPCGSFLLFACSGSPRLYSLTFDGEDSVFLRPQSIKRVLLIADLQE 334 (445)
T ss_pred ecccceeeeehhcccceecceec-cCCceeeeeecCCCCEEEEEEcCCceEEEEeecCCCccccCcccceeeeeeccchh
Confidence 9999999999544 444333333 3458999999999999888877766777664322100 011110
Q ss_pred ----c----CCCceEEEEEeCCCCEEEEEEcCC--------eEEEEECCCCcEEEec--c--CCCCeeEEEEeC---CCC
Q 003236 766 ----C----TGNKFHSCVFHPTFPSLLVIGCYE--------TLELWNMTENKTLTLS--A--HDKLVSSLAAST---VNG 822 (837)
Q Consensus 766 ----~----~~~~I~sv~fspdg~~L~sgs~dg--------~I~IwDl~s~~~~~l~--~--h~~~V~sla~sp---dg~ 822 (837)
. -.+++.+++|+|.|.++++.-..+ .|.+||......+.+. + .......|+|+| ++.
T Consensus 335 ~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~~~v~~~k~~i~~fdtr~sp~vels~cg~i~ge~P~~IsF~pl~n~g~ 414 (445)
T KOG2139|consen 335 VTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQSFVLLCKLHISRFDTRKSPPVELSYCGMIGGEYPAYISFGPLKNEGR 414 (445)
T ss_pred hhhhcCcccccCccceeeECCCCCEEEEEEcCCchhhhhhhhhhhhcccccCceEEEecccccCCCCceEEeeecccCCc
Confidence 1 146789999999999999876544 4677887666555332 1 112245556655 455
Q ss_pred EEEEEECCCcEEEe
Q 003236 823 MVASASHDKCVKIW 836 (837)
Q Consensus 823 ~LaSgs~DG~I~IW 836 (837)
+|..|=..|.|.-|
T Consensus 415 lLsiaWsTGriq~y 428 (445)
T KOG2139|consen 415 LLSIAWSTGRIQRY 428 (445)
T ss_pred EEEEEeccCceEee
Confidence 66666566666543
|
|
| >KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.64 E-value=7.1e-16 Score=165.19 Aligned_cols=262 Identities=16% Similarity=0.267 Sum_probs=211.0
Q ss_pred eEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeEEee
Q 003236 558 VESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFT 637 (837)
Q Consensus 558 V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~~~~~~~~~~ 637 (837)
-..+.++.+|++|+.|+..|.|..+|..++++...+. -...|.++.|..+..+||++ ....++|||-..- .+..+.
T Consensus 132 PY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~-v~Etv~Dv~~LHneq~~AVA-QK~y~yvYD~~Gt--ElHClk 207 (545)
T KOG1272|consen 132 PYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEIN-VMETVRDVTFLHNEQFFAVA-QKKYVYVYDNNGT--ELHCLK 207 (545)
T ss_pred CeeeeecCCccEEEecCCccceeeeecccceeeeeee-hhhhhhhhhhhcchHHHHhh-hhceEEEecCCCc--EEeehh
Confidence 4568999999999999999999999999999998885 44679999999988888877 5678999997642 356666
Q ss_pred ccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeeEEec-CCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeE
Q 003236 638 GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAIENYISILDVETQVC 716 (837)
Q Consensus 638 ~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~-~~~i~sl~~sp~g~~llags~dg~I~iwDl~s~~~ 716 (837)
.| ..|..+.|.|. .++|++++..|.++.-|+.+|+.+..+.. .+.+..++-+|-...+-+|...|+|.+|.....++
T Consensus 208 ~~-~~v~rLeFLPy-HfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~skeP 285 (545)
T KOG1272|consen 208 RH-IRVARLEFLPY-HFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSKEP 285 (545)
T ss_pred hc-Cchhhhcccch-hheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcCCCceEEecCCCCcch
Confidence 54 56899999998 67888999999999999999999988875 45678888899988888999999999999999999
Q ss_pred EEEEcCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEE
Q 003236 717 RLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELW 795 (837)
Q Consensus 717 ~~~l~~h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fspdg~~L~sgs~dg~I~Iw 795 (837)
+..+-.|.++|.+|++.++|.|+++++ |..|+|||++... .++++.. ......++||..| +++.+....|.||
T Consensus 286 LvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~---ql~t~~t-p~~a~~ls~Sqkg--lLA~~~G~~v~iw 359 (545)
T KOG1272|consen 286 LVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFY---QLHTYRT-PHPASNLSLSQKG--LLALSYGDHVQIW 359 (545)
T ss_pred HHHHHhcCCCcceEEECCCCcEEeecccccceeEeeecccc---ccceeec-CCCcccccccccc--ceeeecCCeeeee
Confidence 998889999999999999999999999 9999999999873 4444443 4566777888776 5666666689999
Q ss_pred E-CCCCc---EEEeccC--CCCeeEEEEeCCCCEEEEEECCC
Q 003236 796 N-MTENK---TLTLSAH--DKLVSSLAASTVNGMVASASHDK 831 (837)
Q Consensus 796 D-l~s~~---~~~l~~h--~~~V~sla~spdg~~LaSgs~DG 831 (837)
. .-.+. ......| .+.|..+.|.|-...|-.|-..|
T Consensus 360 ~d~~~~s~~~~~pYm~H~~~~~V~~l~FcP~EDvLGIGH~~G 401 (545)
T KOG1272|consen 360 KDALKGSGHGETPYMNHRCGGPVEDLRFCPYEDVLGIGHAGG 401 (545)
T ss_pred hhhhcCCCCCCcchhhhccCcccccceeccHHHeeeccccCC
Confidence 4 32211 1122222 45899999999777666665544
|
|
| >KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.62 E-value=5.6e-15 Score=157.60 Aligned_cols=194 Identities=23% Similarity=0.251 Sum_probs=154.9
Q ss_pred EEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeEEee-
Q 003236 559 ESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFT- 637 (837)
Q Consensus 559 ~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~~~~~~~~~~- 637 (837)
.+++|+.+|..|++|+.||+++||+......+.....|...|.++.|+||+++|++.+.| ..+||++.++.. +....
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~-~a~~t~ 225 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAA-LARKTP 225 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCch-hhhcCC
Confidence 689999999999999999999999998888888888899999999999999999999999 899999998743 33222
Q ss_pred -ccccceEEEEEcCCC---Ce-EEEEEeCCCcEEEEECCCCee------eeEEecCCCeeEEEEecCCCEEEEEEcCCeE
Q 003236 638 -GHSTTVMSLDFHPSK---ED-LLCSCDNNSEIRYWSINNGSC------AGVFKCQSGATQMRFQPRLGRILAAAIENYI 706 (837)
Q Consensus 638 -~h~~~V~sl~fspdg---~~-llasgs~Dg~I~vwDl~t~~~------i~~~~~~~~i~sl~~sp~g~~llags~dg~I 706 (837)
.....+..+.|+.++ .. +++.....+.|+.||+...+- ...+.....|.+++++.+|++++.|+.||.|
T Consensus 226 ~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~dGsV 305 (398)
T KOG0771|consen 226 FSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTMDGSV 305 (398)
T ss_pred cccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEeccCCcE
Confidence 233455667787664 22 333334456677777643222 2222235689999999999999999999999
Q ss_pred EEEECCCCeEEEEEc-CCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCC
Q 003236 707 SILDVETQVCRLKLQ-GHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGS 754 (837)
Q Consensus 707 ~iwDl~s~~~~~~l~-~h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s 754 (837)
.||+..+-+.+..++ .|...|+.+.|+||.+++++.+ |..+.|..+.-
T Consensus 306 ai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~v 355 (398)
T KOG0771|consen 306 AIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLAV 355 (398)
T ss_pred EEEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCCceeEEEEee
Confidence 999999887776665 5999999999999999999987 88888887654
|
|
| >PRK04922 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=9.1e-14 Score=159.52 Aligned_cols=234 Identities=16% Similarity=0.084 Sum_probs=168.6
Q ss_pred CcEEEEeCCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCC---CeEEEEEcCCCCceeEEeeccccceEEEEEcCCCC
Q 003236 577 KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSAD---RTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKE 653 (837)
Q Consensus 577 g~I~VWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~D---g~I~IWDl~~~~~~~~~~~~h~~~V~sl~fspdg~ 653 (837)
..|.+||.... ....+..+...+.+.+|+||++.|+.++.+ ..|++||+.++.. ..+..+.+...++.|+|+|+
T Consensus 184 ~~l~i~D~~g~-~~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~--~~l~~~~g~~~~~~~SpDG~ 260 (433)
T PRK04922 184 YALQVADSDGY-NPQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQR--ELVASFRGINGAPSFSPDGR 260 (433)
T ss_pred EEEEEECCCCC-CceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCE--EEeccCCCCccCceECCCCC
Confidence 46889998644 344555677889999999999999988753 4699999987653 33334445566889999999
Q ss_pred eEEEEEeCCC--cEEEEECCCCeeeeEEecCCCeeEEEEecCCCEEEEEEc-CC--eEEEEECCCCeEEEEEcCCCCCEE
Q 003236 654 DLLCSCDNNS--EIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAI-EN--YISILDVETQVCRLKLQGHKNQVH 728 (837)
Q Consensus 654 ~llasgs~Dg--~I~vwDl~t~~~i~~~~~~~~i~sl~~sp~g~~llags~-dg--~I~iwDl~s~~~~~~l~~h~~~V~ 728 (837)
.++++.+.+| .|++||+.+++..............+|+|+++.|++++. ++ .|+++|+.++..... ..+.....
T Consensus 261 ~l~~~~s~~g~~~Iy~~d~~~g~~~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~l-t~~g~~~~ 339 (433)
T PRK04922 261 RLALTLSRDGNPEIYVMDLGSRQLTRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAERL-TFQGNYNA 339 (433)
T ss_pred EEEEEEeCCCCceEEEEECCCCCeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEEe-ecCCCCcc
Confidence 8887776665 599999998876554443344567899999999888764 34 477778877654332 22334455
Q ss_pred EEEEcCCCCEEEEEe-C-C--eEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcC---CeEEEEECCCCc
Q 003236 729 SVCWNTSGEYLASVS-D-E--LVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCY---ETLELWNMTENK 801 (837)
Q Consensus 729 sl~~spdg~~Lasgs-D-g--~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fspdg~~L~sgs~d---g~I~IwDl~s~~ 801 (837)
.++|+|||++|+..+ + + .|.+||+.++.. . .+. +......+.|+|||++|+..+.+ ..|+++++..+.
T Consensus 340 ~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~---~-~Lt-~~~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~g~~ 414 (433)
T PRK04922 340 RASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSV---R-TLT-PGSLDESPSFAPNGSMVLYATREGGRGVLAAVSTDGRV 414 (433)
T ss_pred CEEECCCCCEEEEEECCCCceeEEEEECCCCCe---E-ECC-CCCCCCCceECCCCCEEEEEEecCCceEEEEEECCCCc
Confidence 789999999998765 3 2 699999977632 2 222 22234567999999998887764 378899997766
Q ss_pred EEEeccCCCCeeEEEEeC
Q 003236 802 TLTLSAHDKLVSSLAAST 819 (837)
Q Consensus 802 ~~~l~~h~~~V~sla~sp 819 (837)
...+..+.+.+..++|+|
T Consensus 415 ~~~l~~~~g~~~~p~wsp 432 (433)
T PRK04922 415 RQRLVSADGEVREPAWSP 432 (433)
T ss_pred eEEcccCCCCCCCCccCC
Confidence 666666677788888886
|
|
| >PRK05137 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.61 E-value=2.5e-13 Score=156.08 Aligned_cols=234 Identities=13% Similarity=0.152 Sum_probs=170.2
Q ss_pred CcEEEEeCCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeC---CCeEEEEEcCCCCceeEEeeccccceEEEEEcCCCC
Q 003236 577 KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA---DRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKE 653 (837)
Q Consensus 577 g~I~VWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~---Dg~I~IWDl~~~~~~~~~~~~h~~~V~sl~fspdg~ 653 (837)
..|++||.+.. ....+..|...+.+.+|+|||+.|+..+. +..|++||+.++.. ..+..+.+.+.+.+|+|||+
T Consensus 182 ~~l~~~d~dg~-~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~--~~l~~~~g~~~~~~~SPDG~ 258 (435)
T PRK05137 182 KRLAIMDQDGA-NVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQR--ELVGNFPGMTFAPRFSPDGR 258 (435)
T ss_pred eEEEEECCCCC-CcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcE--EEeecCCCcccCcEECCCCC
Confidence 47888897544 44556678889999999999999988764 46899999987653 44555667788999999999
Q ss_pred eEEEEEeCCCc--EEEEECCCCeeeeEEecCCCeeEEEEecCCCEEEEEEcC---CeEEEEECCCCeEEEEEcCCCCCEE
Q 003236 654 DLLCSCDNNSE--IRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIE---NYISILDVETQVCRLKLQGHKNQVH 728 (837)
Q Consensus 654 ~llasgs~Dg~--I~vwDl~t~~~i~~~~~~~~i~sl~~sp~g~~llags~d---g~I~iwDl~s~~~~~~l~~h~~~V~ 728 (837)
.++++.+.++. |++||+.++................|+|+++.|+..+.. ..|+++|+..+.... +..+...+.
T Consensus 259 ~la~~~~~~g~~~Iy~~d~~~~~~~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~~-lt~~~~~~~ 337 (435)
T PRK05137 259 KVVMSLSQGGNTDIYTMDLRSGTTTRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPRR-ISFGGGRYS 337 (435)
T ss_pred EEEEEEecCCCceEEEEECCCCceEEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeEE-eecCCCccc
Confidence 88888776665 888899888765544444456678999999998877643 368889987765443 333455677
Q ss_pred EEEEcCCCCEEEEEe-C-C--eEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcC------CeEEEEECC
Q 003236 729 SVCWNTSGEYLASVS-D-E--LVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCY------ETLELWNMT 798 (837)
Q Consensus 729 sl~~spdg~~Lasgs-D-g--~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fspdg~~L~sgs~d------g~I~IwDl~ 798 (837)
...|+|||++|+... + + .|.+||+..+. ...+. ....+....|+|||+.|+..+.+ ..|+++|+.
T Consensus 338 ~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~----~~~lt-~~~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~ 412 (435)
T PRK05137 338 TPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSG----ERILT-SGFLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLT 412 (435)
T ss_pred CeEECCCCCEEEEEEcCCCceEEEEEECCCCc----eEecc-CCCCCCCCeECCCCCEEEEEEccCCCCCcceEEEEECC
Confidence 789999999998876 2 2 68888876542 12222 22346778999999998876653 268888988
Q ss_pred CCcEEEeccCCCCeeEEEEeCC
Q 003236 799 ENKTLTLSAHDKLVSSLAASTV 820 (837)
Q Consensus 799 s~~~~~l~~h~~~V~sla~spd 820 (837)
.+....+. ..+.+...+|+|-
T Consensus 413 g~~~~~l~-~~~~~~~p~Wsp~ 433 (435)
T PRK05137 413 GRNEREVP-TPGDASDPAWSPL 433 (435)
T ss_pred CCceEEcc-CCCCccCcccCCC
Confidence 77665544 3455777888763
|
|
| >KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.3e-12 Score=135.03 Aligned_cols=267 Identities=15% Similarity=0.213 Sum_probs=180.0
Q ss_pred CeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEeccCCCCeEEEEEcCCCCEEEE-EeCC------CeEEEEEcCCC
Q 003236 557 KVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLAT-SSAD------RTVRVWDTENP 629 (837)
Q Consensus 557 ~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Lat-gs~D------g~I~IWDl~~~ 629 (837)
...+++|+.|...+++|..+| .+||+++..+....-..+.+.+.-+...--.++|+. |+.+ ..|.|||-..
T Consensus 7 ~~lsvs~NQD~ScFava~~~G-friyn~~P~ke~~~r~~~~~G~~~veMLfR~N~laLVGGg~~pky~pNkviIWDD~k- 84 (346)
T KOG2111|consen 7 KTLSVSFNQDHSCFAVATDTG-FRIYNCDPFKESASRQFIDGGFKIVEMLFRSNYLALVGGGSRPKYPPNKVIIWDDLK- 84 (346)
T ss_pred ceeEEEEccCCceEEEEecCc-eEEEecCchhhhhhhccccCchhhhhHhhhhceEEEecCCCCCCCCCceEEEEeccc-
Confidence 345699999999999988665 899999876554333333333222222222345544 3332 4799999443
Q ss_pred CceeEEeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECC-CCeeeeEEec---CCCeeEEEEecCCCEEEEEE-cCC
Q 003236 630 DYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSIN-NGSCAGVFKC---QSGATQMRFQPRLGRILAAA-IEN 704 (837)
Q Consensus 630 ~~~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~-t~~~i~~~~~---~~~i~sl~~sp~g~~llags-~dg 704 (837)
+.++.++. ...+|.++.+.++ .+++.- .+.|+||... +-+.++.+.. +.+..+++-......|+.-+ .-|
T Consensus 85 ~~~i~el~-f~~~I~~V~l~r~--riVvvl--~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~LafPg~k~G 159 (346)
T KOG2111|consen 85 ERCIIELS-FNSEIKAVKLRRD--RIVVVL--ENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLLAFPGFKTG 159 (346)
T ss_pred CcEEEEEE-eccceeeEEEcCC--eEEEEe--cCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceEEEcCCCccc
Confidence 33454444 6688999999976 244333 6789999987 5566665554 33444444333333344333 358
Q ss_pred eEEEEECCCCeE--EEEEcCCCCCEEEEEEcCCCCEEEEEe-CC-eEEEEEcCCCCCceeEEEeec--CCCceEEEEEeC
Q 003236 705 YISILDVETQVC--RLKLQGHKNQVHSVCWNTSGEYLASVS-DE-LVRVWSIGSGSKGECIHELSC--TGNKFHSCVFHP 778 (837)
Q Consensus 705 ~I~iwDl~s~~~--~~~l~~h~~~V~sl~~spdg~~Lasgs-Dg-~I~IwDl~s~~~~~~i~~~~~--~~~~I~sv~fsp 778 (837)
.|.|.|+...+. ...+..|.+.|.|++++-+|.++|+++ .| .|||||..++ ..+.++.. ....|.+++|+|
T Consensus 160 qvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g---~~l~E~RRG~d~A~iy~iaFSp 236 (346)
T KOG2111|consen 160 QVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDG---TLLQELRRGVDRADIYCIAFSP 236 (346)
T ss_pred eEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCC---cEeeeeecCCchheEEEEEeCC
Confidence 999999987655 477888999999999999999999999 66 6999999998 55555543 346799999999
Q ss_pred CCCEEEEEEcCCeEEEEECCCCc---E-----------E-----------EeccCCCCeeEEEEeCCCCEEEEEECCCcE
Q 003236 779 TFPSLLVIGCYETLELWNMTENK---T-----------L-----------TLSAHDKLVSSLAASTVNGMVASASHDKCV 833 (837)
Q Consensus 779 dg~~L~sgs~dg~I~IwDl~s~~---~-----------~-----------~l~~h~~~V~sla~spdg~~LaSgs~DG~I 833 (837)
+..+|++++..|+|+||.++... . + .+.-..+...-++|-.+...++..+.||.-
T Consensus 237 ~~s~LavsSdKgTlHiF~l~~~~~~~~~~SSl~~~~~~lpky~~S~wS~~~f~l~~~~~~~~~fg~~~nsvi~i~~Dgsy 316 (346)
T KOG2111|consen 237 NSSWLAVSSDKGTLHIFSLRDTENTEDESSSLSFKRLVLPKYFSSEWSFAKFQLPQGTQCIIAFGSETNTVIAICADGSY 316 (346)
T ss_pred CccEEEEEcCCCeEEEEEeecCCCCccccccccccccccchhcccceeEEEEEccCCCcEEEEecCCCCeEEEEEeCCcE
Confidence 99999999999999999886522 1 0 111123345556676665566666677754
|
|
| >KOG4227 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.60 E-value=9.6e-14 Score=145.57 Aligned_cols=285 Identities=13% Similarity=0.137 Sum_probs=211.6
Q ss_pred CCccccCCCeEEcccCCCceEEeecCCCCCCCCccccccccCCCeeeeEEEEec-CCCCCeEEEEEcCCCCEEEEEECCC
Q 003236 499 PNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIP-ASTSKVESCHFSPDGKLLATGGHDK 577 (837)
Q Consensus 499 ~~~l~~~~~~v~~Gs~D~~v~~w~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~-~H~~~V~sl~fSpdg~~Lasgs~Dg 577 (837)
...+...++|+++|+.|..+++|........ .+-+++.+.. .|...|.|++|....++|++|+.++
T Consensus 61 AlqFS~N~~~L~SGGDD~~~~~W~~de~~~~-------------k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~ 127 (609)
T KOG4227|consen 61 ALQFSHNDRFLASGGDDMHGRVWNVDELMVR-------------KTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWG 127 (609)
T ss_pred eeeeccCCeEEeecCCcceeeeechHHHHhh-------------cCCCCceeccCccccceEEEEEccCCeeEecCCCcc
Confidence 3445556799999999999999954332110 0112233333 4568899999999999999999999
Q ss_pred cEEEEeCCCCeEEEEecc--CCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCcee--EEeeccccceEEEEEcCCCC
Q 003236 578 KAVLWCTESFTVKSTLEE--HTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSL--RTFTGHSTTVMSLDFHPSKE 653 (837)
Q Consensus 578 ~I~VWd~~t~~~~~~l~~--h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~~~~~~--~~~~~h~~~V~sl~fspdg~ 653 (837)
+|.+.|+++.+.+..+.. ..+.|+.+..+|..+.|++.+.+|.|.+||.......+ ...........++.|+|...
T Consensus 128 ~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~P 207 (609)
T KOG4227|consen 128 TVIKHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPETP 207 (609)
T ss_pred eeEeeecccceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecCCCc
Confidence 999999999888877742 23489999999999999999999999999998754322 22333456678899999999
Q ss_pred eEEEEEeCCCcEEEEECCCCee-eeEEe----c---CCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEcCCC-
Q 003236 654 DLLCSCDNNSEIRYWSINNGSC-AGVFK----C---QSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHK- 724 (837)
Q Consensus 654 ~llasgs~Dg~I~vwDl~t~~~-i~~~~----~---~~~i~sl~~sp~g~~llags~dg~I~iwDl~s~~~~~~l~~h~- 724 (837)
.+|++.+..+.+.+||++.... +.... . ......+.|+|.|+.+++.-....-.+||+-+..+...-..|.
T Consensus 208 ~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~R~~V~k~D~N~ 287 (609)
T KOG4227|consen 208 ALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFISQRCFVLKSDHNP 287 (609)
T ss_pred eeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCEEeeeecccceeEeccCCC
Confidence 9999999999999999986432 21111 1 2234678999999999988877777888988754433222332
Q ss_pred ------CCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCC--------------------ceeEEEeecCCCceEEEEEe
Q 003236 725 ------NQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSK--------------------GECIHELSCTGNKFHSCVFH 777 (837)
Q Consensus 725 ------~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~--------------------~~~i~~~~~~~~~I~sv~fs 777 (837)
..+.+++|..|-. +++|+ +-.|++|.+..... ...+..+++|...+..+.|+
T Consensus 288 ~GY~N~~T~KS~~F~~D~~-v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~~~VLrGHRSv~NQVRF~ 366 (609)
T KOG4227|consen 288 NGYCNIKTIKSMTFIDDYT-VATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEKELTVLRGHRSVPNQVRFS 366 (609)
T ss_pred Ccceeeeeeeeeeeeccee-eeccCcccceEEEecCCCccccCccccCcchhhCchhheecceeEEEecccccccceeec
Confidence 2466778865544 88888 55899998853110 12345678899999999999
Q ss_pred CCCCEEEEEEcCCeEEEEEC
Q 003236 778 PTFPSLLVIGCYETLELWNM 797 (837)
Q Consensus 778 pdg~~L~sgs~dg~I~IwDl 797 (837)
|....|++.+-.+.++||.-
T Consensus 367 ~H~~~l~SSGVE~~~KlWS~ 386 (609)
T KOG4227|consen 367 QHNNLLVSSGVENSFKLWSD 386 (609)
T ss_pred CCcceEeccchhhheecccc
Confidence 99999999999999999964
|
|
| >KOG1963 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.60 E-value=3.7e-13 Score=154.85 Aligned_cols=274 Identities=20% Similarity=0.216 Sum_probs=194.6
Q ss_pred EEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEeccCCCCeEEEEEcCCC---CEEEEEeCCCeEEEEEcCCCCceeEE
Q 003236 559 ESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSL---SRLATSSADRTVRVWDTENPDYSLRT 635 (837)
Q Consensus 559 ~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~I~~l~fspdg---~~Latgs~Dg~I~IWDl~~~~~~~~~ 635 (837)
..-.||+|+++++... +..|.||...++.++..+.+|..+++.+.+.|.. .++++++.||+|++||...+.. +++
T Consensus 20 ~~avfSnD~k~l~~~~-~~~V~VyS~~Tg~~i~~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~~~~L-lkt 97 (792)
T KOG1963|consen 20 SPAVFSNDAKFLFLCT-GNFVKVYSTATGECITSLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDWSDGEL-LKT 97 (792)
T ss_pred cccccccCCcEEEEee-CCEEEEEecchHhhhhhcccccCccceeeecCCCccceEEEEEecCccEEEecCCCcEE-EEE
Confidence 3457899999888776 5689999999999999999999999999998853 4788999999999999998664 555
Q ss_pred eeccccceEEEEEcC---CCCeEEEEEeCCCcE-EEEECCCCeeeeEEe-------------cCCCeeEEEEecCCCEEE
Q 003236 636 FTGHSTTVMSLDFHP---SKEDLLCSCDNNSEI-RYWSINNGSCAGVFK-------------CQSGATQMRFQPRLGRIL 698 (837)
Q Consensus 636 ~~~h~~~V~sl~fsp---dg~~llasgs~Dg~I-~vwDl~t~~~i~~~~-------------~~~~i~sl~~sp~g~~ll 698 (837)
+..+ .++..+.+.| +....+..+..|..+ .....+..+....+. ....-.++.+++.+. +.
T Consensus 98 ~~~~-~~v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~~~~I~~~~~ge-~~ 175 (792)
T KOG1963|consen 98 FDNN-LPVHALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQEPKSIVDNNSGE-FK 175 (792)
T ss_pred EecC-CceeEEEechhHhCccceeEeecccceeeeecccccccceeeeEeeeccccchhhhhhhcCCccEEEcCCce-EE
Confidence 5433 2344433322 111112122222111 111111111111110 011135566666544 45
Q ss_pred EEEcCCeEEEEECCCCeEEEE----EcCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCC-CCCceeEEEeecCCCceE
Q 003236 699 AAAIENYISILDVETQVCRLK----LQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGS-GSKGECIHELSCTGNKFH 772 (837)
Q Consensus 699 ags~dg~I~iwDl~s~~~~~~----l~~h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s-~~~~~~i~~~~~~~~~I~ 772 (837)
....+..+.+|+..+...... -..|...++|.+++|++++++++. ||.|.+|.--. .......+.+.=|...|.
T Consensus 176 ~i~~~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~ 255 (792)
T KOG1963|consen 176 GIVHMCKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVN 255 (792)
T ss_pred EEEEeeeEEEEEecccceeeccchhhhhhcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEecccccc
Confidence 555567788888877541111 123667799999999999999999 99999996443 222345556677889999
Q ss_pred EEEEeCCCCEEEEEEcCCeEEEEECCCCcEEEeccCCCCeeEEEEeCCCCEEEEEECCCcEEEe
Q 003236 773 SCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIW 836 (837)
Q Consensus 773 sv~fspdg~~L~sgs~dg~I~IwDl~s~~~~~l~~h~~~V~sla~spdg~~LaSgs~DG~I~IW 836 (837)
+++|+++|.+|++||.++.+.+|.+.+++..-+..-.++|..+.++||+.+.+....|..|.+-
T Consensus 256 ~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~kqfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li 319 (792)
T KOG1963|consen 256 SLSFSSDGAYLLSGGREGVLVLWQLETGKKQFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLI 319 (792)
T ss_pred eeEEecCCceEeecccceEEEEEeecCCCcccccccCCeeEEEEEcCCCCeEEEEecCceEEEE
Confidence 9999999999999999999999999999977777888999999999999999999999988763
|
|
| >PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3 | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.5e-11 Score=136.88 Aligned_cols=261 Identities=12% Similarity=0.126 Sum_probs=182.4
Q ss_pred CeEEEEEcCCCCEEEEEEC----CCcEEEEeCCCC--e--EEEEeccCCCCeEEEEEcCCCCEEEEEeC-CCeEEEEEcC
Q 003236 557 KVESCHFSPDGKLLATGGH----DKKAVLWCTESF--T--VKSTLEEHTQWITDVRFSPSLSRLATSSA-DRTVRVWDTE 627 (837)
Q Consensus 557 ~V~sl~fSpdg~~Lasgs~----Dg~I~VWd~~t~--~--~~~~l~~h~~~I~~l~fspdg~~Latgs~-Dg~I~IWDl~ 627 (837)
....++++|++++|.++.. ++.|..|++... . .+............++++|++++|+++.. +|.|.++++.
T Consensus 38 ~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~ 117 (345)
T PF10282_consen 38 NPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLD 117 (345)
T ss_dssp SECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEEC
T ss_pred CCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEcc
Confidence 3566899999999998876 468999987653 3 33444434456678999999999999875 8999999998
Q ss_pred CCCceeEE--ee-----------ccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCe--eee--E--EecCCCeeEE
Q 003236 628 NPDYSLRT--FT-----------GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS--CAG--V--FKCQSGATQM 688 (837)
Q Consensus 628 ~~~~~~~~--~~-----------~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~--~i~--~--~~~~~~i~sl 688 (837)
........ .. .......++.|+|+++.++++.-....|++|++.... ... . +....+...+
T Consensus 118 ~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~ 197 (345)
T PF10282_consen 118 DDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHL 197 (345)
T ss_dssp TTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEE
T ss_pred CCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEE
Confidence 75322211 11 1234578999999999888776666789999997654 322 2 2335678999
Q ss_pred EEecCCCEEEEEEc-CCeEEEEECC--CCe--EEEEEcC------CCCCEEEEEEcCCCCEEEEEe--CCeEEEEEcCC-
Q 003236 689 RFQPRLGRILAAAI-ENYISILDVE--TQV--CRLKLQG------HKNQVHSVCWNTSGEYLASVS--DELVRVWSIGS- 754 (837)
Q Consensus 689 ~~sp~g~~llags~-dg~I~iwDl~--s~~--~~~~l~~------h~~~V~sl~~spdg~~Lasgs--Dg~I~IwDl~s- 754 (837)
.|+|+++++++.++ ++.|.+|++. ++. .+..+.. .......|+++|||++|+++. ++.|.+|++..
T Consensus 198 ~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~ 277 (345)
T PF10282_consen 198 AFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPA 277 (345)
T ss_dssp EE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTT
T ss_pred EEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecC
Confidence 99999999888876 5789999888 442 2222321 122678999999999999887 77999999943
Q ss_pred CCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcC-CeEEEEEC--CCCcEEEec--cCCCCeeEEEE
Q 003236 755 GSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCY-ETLELWNM--TENKTLTLS--AHDKLVSSLAA 817 (837)
Q Consensus 755 ~~~~~~i~~~~~~~~~I~sv~fspdg~~L~sgs~d-g~I~IwDl--~s~~~~~l~--~h~~~V~sla~ 817 (837)
......+..+...+.....++++|+|++|++++.+ +.|.+|++ .+|.+.... ..-....||.|
T Consensus 278 ~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d~~tG~l~~~~~~~~~~~p~ci~f 345 (345)
T PF10282_consen 278 TGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVFDIDPDTGKLTPVGSSVPIPSPVCIVF 345 (345)
T ss_dssp TTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEEESSSEEEEEE
T ss_pred CCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCeEEEEEEeCCCCcEEEecccccCCCCEEEeC
Confidence 23445666666667778999999999999998864 48888865 566655332 23345666665
|
1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H. |
| >KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.5e-14 Score=156.93 Aligned_cols=207 Identities=14% Similarity=0.132 Sum_probs=166.1
Q ss_pred CEEEEEECCCcEEEEeCCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeEEeeccccceEEEE
Q 003236 568 KLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLD 647 (837)
Q Consensus 568 ~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~sl~ 647 (837)
..|+.++.||.+.|.+ +.++....+..|.+.|.|-+|+|||.-|+++++||.|++|.-.. ....++.....+|.|++
T Consensus 76 d~~~i~s~DGkf~il~-k~~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrsG--MLRStl~Q~~~~v~c~~ 152 (737)
T KOG1524|consen 76 DTLLICSNDGRFVILN-KSARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSRSG--MLRSTVVQNEESIRCAR 152 (737)
T ss_pred ceEEEEcCCceEEEec-ccchhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEeccc--hHHHHHhhcCceeEEEE
Confidence 4688888999999987 66788888999999999999999999999999999999998653 22344455678899999
Q ss_pred EcCCCCeEEEEEeCCCcEEEEECCCCe-eeeEEecCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEcCCCCC
Q 003236 648 FHPSKEDLLCSCDNNSEIRYWSINNGS-CAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQ 726 (837)
Q Consensus 648 fspdg~~llasgs~Dg~I~vwDl~t~~-~i~~~~~~~~i~sl~~sp~g~~llags~dg~I~iwDl~s~~~~~~l~~h~~~ 726 (837)
|.|+.+.++++.+ +.+.+=.+.... .++--.+++-|.++.|++..+.+++|++|-..+|||.. |..++.-..|+.+
T Consensus 153 W~p~S~~vl~c~g--~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~-G~~Lf~S~~~ey~ 229 (737)
T KOG1524|consen 153 WAPNSNSIVFCQG--GHISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQ-GANLFTSAAEEYA 229 (737)
T ss_pred ECCCCCceEEecC--CeEEEeecccccceeEEeccCcEEEEeecCccccceeecCCceeEEeeccc-CcccccCChhccc
Confidence 9999988887664 456665565443 44444456668999999999999999999999999975 5666666779999
Q ss_pred EEEEEEcCCCCEEEEEeCCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEE
Q 003236 727 VHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELW 795 (837)
Q Consensus 727 V~sl~~spdg~~LasgsDg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fspdg~~L~sgs~dg~I~Iw 795 (837)
|++++|.|+ +.++.++-.++++=. ...+.|..++|++||..+++|+..|.|.+-
T Consensus 230 ITSva~npd-~~~~v~S~nt~R~~~--------------p~~GSifnlsWS~DGTQ~a~gt~~G~v~~A 283 (737)
T KOG1524|consen 230 ITSVAFNPE-KDYLLWSYNTARFSS--------------PRVGSIFNLSWSADGTQATCGTSTGQLIVA 283 (737)
T ss_pred eeeeeeccc-cceeeeeeeeeeecC--------------CCccceEEEEEcCCCceeeccccCceEEEe
Confidence 999999999 666767666666222 234678899999999999999999966543
|
|
| >KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.59 E-value=2.2e-13 Score=150.18 Aligned_cols=237 Identities=15% Similarity=0.231 Sum_probs=171.5
Q ss_pred CCCCEEEE--EECCCcEEEEeCCC-CeEE----EEeccCCCCeEEEEEcC-CCCEEEEEeCCCeEEEEEcCCCCc-----
Q 003236 565 PDGKLLAT--GGHDKKAVLWCTES-FTVK----STLEEHTQWITDVRFSP-SLSRLATSSADRTVRVWDTENPDY----- 631 (837)
Q Consensus 565 pdg~~Las--gs~Dg~I~VWd~~t-~~~~----~~l~~h~~~I~~l~fsp-dg~~Latgs~Dg~I~IWDl~~~~~----- 631 (837)
.+.+++|+ .+..|.|-||++.. |++. -.+ .....|+++.|.| |...|++++.||.|++|.+..+..
T Consensus 589 an~~rvAVPL~g~gG~iai~el~~PGrLPDgv~p~l-~Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~ 667 (1012)
T KOG1445|consen 589 ANNKRVAVPLAGSGGVIAIYELNEPGRLPDGVMPGL-FNGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEM 667 (1012)
T ss_pred eccceEEEEecCCCceEEEEEcCCCCCCCccccccc-ccCceeeecccCCCChHHeeecccCceEEEEEeccCCCCcccC
Confidence 34555554 45578999999874 2222 222 2446799999999 788999999999999999876542
Q ss_pred -eeEEeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeeEEe-cCCCeeEEEEecCCCEEEEEEcCCeEEEE
Q 003236 632 -SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK-CQSGATQMRFQPRLGRILAAAIENYISIL 709 (837)
Q Consensus 632 -~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~-~~~~i~sl~~sp~g~~llags~dg~I~iw 709 (837)
+-..+..|...|+++.|+|-...+|++++.|.+|++||+.+++....+. +.+.|..++|+|+|..+++.|.||+|++|
T Consensus 668 tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy 747 (1012)
T KOG1445|consen 668 TPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLANAKLYSRLVGHTDQIFGIAWSPDGRRIATVCKDGTLRVY 747 (1012)
T ss_pred CcceeeecccceEEEEEecchhhhHhhhhhccceeeeeehhhhhhhheeccCcCceeEEEECCCCcceeeeecCceEEEe
Confidence 3467889999999999999888899999999999999999988776665 45679999999999999999999999999
Q ss_pred ECCCCe-EEEEEcCC-CCCEEEEEEcCCCCEEEEEe-CC----eEEEEEcCCCCCceeEEEeecC-CCceEEEEEeCCCC
Q 003236 710 DVETQV-CRLKLQGH-KNQVHSVCWNTSGEYLASVS-DE----LVRVWSIGSGSKGECIHELSCT-GNKFHSCVFHPTFP 781 (837)
Q Consensus 710 Dl~s~~-~~~~l~~h-~~~V~sl~~spdg~~Lasgs-Dg----~I~IwDl~s~~~~~~i~~~~~~-~~~I~sv~fspdg~ 781 (837)
+.++++ .+..-.+. ...--.|.|.-||+++++.+ |. .|.+||..+-.. ..+.+.... ...+.--.+.+|..
T Consensus 748 ~Prs~e~pv~Eg~gpvgtRgARi~wacdgr~viv~Gfdk~SeRQv~~Y~Aq~l~~-~pl~t~~lDvaps~LvP~YD~Ds~ 826 (1012)
T KOG1445|consen 748 EPRSREQPVYEGKGPVGTRGARILWACDGRIVIVVGFDKSSERQVQMYDAQTLDL-RPLYTQVLDVAPSPLVPHYDYDSN 826 (1012)
T ss_pred CCCCCCCccccCCCCccCcceeEEEEecCcEEEEecccccchhhhhhhhhhhccC-CcceeeeecccCccccccccCCCc
Confidence 998863 44443332 12334578888999888876 54 788998765431 122221111 11222234566665
Q ss_pred E-EEEEEcCCeEEEEECCCCcEE
Q 003236 782 S-LLVIGCYETLELWNMTENKTL 803 (837)
Q Consensus 782 ~-L~sgs~dg~I~IwDl~s~~~~ 803 (837)
. +++|-.|..|++|.+......
T Consensus 827 ~lfltGKGD~~v~~yEv~~esPy 849 (1012)
T KOG1445|consen 827 VLFLTGKGDRFVNMYEVIYESPY 849 (1012)
T ss_pred eEEEecCCCceEEEEEecCCCce
Confidence 4 455566779999998665543
|
|
| >KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.59 E-value=3e-15 Score=169.40 Aligned_cols=270 Identities=19% Similarity=0.225 Sum_probs=201.9
Q ss_pred CccccCCCeEEcccCCCceEEeecCCCCCCCCccccccccCCCeeeeEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcE
Q 003236 500 NQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKA 579 (837)
Q Consensus 500 ~~l~~~~~~v~~Gs~D~~v~~w~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~H~~~V~sl~fSpdg~~Lasgs~Dg~I 579 (837)
..++-..++|.+|+.|..|++|...+. .+....+||.+.|+.++.+.+..++|+++.|..|
T Consensus 196 a~fDrtg~~Iitgsdd~lvKiwS~et~-------------------~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vI 256 (1113)
T KOG0644|consen 196 AIFDRTGRYIITGSDDRLVKIWSMETA-------------------RCLASCRGHSGDITDLAVSSNNTMIAAASNDKVI 256 (1113)
T ss_pred eeeccccceEeecCccceeeeeeccch-------------------hhhccCCCCccccchhccchhhhhhhhcccCceE
Confidence 345666789999999999999964433 3456788999999999999999999999999999
Q ss_pred EEEeCCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcC-CCC-ceeEEee-ccccceEEEEEcCCCCeEE
Q 003236 580 VLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTE-NPD-YSLRTFT-GHSTTVMSLDFHPSKEDLL 656 (837)
Q Consensus 580 ~VWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~-~~~-~~~~~~~-~h~~~V~sl~fspdg~~ll 656 (837)
++|.+.++.++..+.+|++.|++|+|+|-. +.+.||++++||.+ ... .+-+... .....+.++-|...+. -+
T Consensus 257 rvWrl~~~~pvsvLrghtgavtaiafsP~~----sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~~~-~f 331 (1113)
T KOG0644|consen 257 RVWRLPDGAPVSVLRGHTGAVTAIAFSPRA----SSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFENNGD-RF 331 (1113)
T ss_pred EEEecCCCchHHHHhccccceeeeccCccc----cCCCCCceEeccccccccccCCCCCCcccccceeeeecccccc-cc
Confidence 999999999999999999999999999953 77899999999988 111 0001111 1224455666666655 45
Q ss_pred EEEeCCCcEEEEECCCCeeeeEEecCCCeeEEEEecC-CCEEEEEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEcCC
Q 003236 657 CSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPR-LGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTS 735 (837)
Q Consensus 657 asgs~Dg~I~vwDl~t~~~i~~~~~~~~i~sl~~sp~-g~~llags~dg~I~iwDl~s~~~~~~l~~h~~~V~sl~~spd 735 (837)
.+++.|+.-..|.+....+.. ..+.-+.++.+ ..+.+++-.+-.+++|++.++...+.+.+|...+..+.++|-
T Consensus 332 ~Tgs~d~ea~n~e~~~l~~~~-----~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd~~yvLd~Hpf 406 (1113)
T KOG0644|consen 332 LTGSRDGEARNHEFEQLAWRS-----NLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLMGHSDEVYVLDVHPF 406 (1113)
T ss_pred ccccCCcccccchhhHhhhhc-----cceEEEeccccccccceeeeeeeEeeeeecccchhhhhhcccccceeeeeecCC
Confidence 589989888888664321110 01111111111 134556667788999999999999999999999999999998
Q ss_pred CCEEEE-Ee-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCc
Q 003236 736 GEYLAS-VS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENK 801 (837)
Q Consensus 736 g~~Las-gs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fspdg~~L~sgs~dg~I~IwDl~s~~ 801 (837)
+..++- ++ ||.+.|||+-.+. .+.........+....|+++|..++....-|.++|+..-.++
T Consensus 407 n~ri~msag~dgst~iwdi~eg~---pik~y~~gh~kl~d~kFSqdgts~~lsd~hgql~i~g~gqs~ 471 (1113)
T KOG0644|consen 407 NPRIAMSAGYDGSTIIWDIWEGI---PIKHYFIGHGKLVDGKFSQDGTSIALSDDHGQLYILGTGQSK 471 (1113)
T ss_pred CcHhhhhccCCCceEeeecccCC---cceeeecccceeeccccCCCCceEecCCCCCceEEeccCCCc
Confidence 776654 34 9999999998874 333333346778889999999999999988999998875544
|
|
| >KOG2394 consensus WD40 protein DMR-N9 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.58 E-value=3.6e-13 Score=146.87 Aligned_cols=244 Identities=15% Similarity=0.195 Sum_probs=164.7
Q ss_pred CeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeE----EEEeccCCCCeEEEEE-----cCCCCEEEEEeCCCeEEEEEcC
Q 003236 557 KVESCHFSPDGKLLATGGHDKKAVLWCTESFTV----KSTLEEHTQWITDVRF-----SPSLSRLATSSADRTVRVWDTE 627 (837)
Q Consensus 557 ~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~----~~~l~~h~~~I~~l~f-----spdg~~Latgs~Dg~I~IWDl~ 627 (837)
.++...++-.|++|+..-. ..+++|+...+.. +....-.....+|-+| .+++--|+.|-.-|.|.+.|..
T Consensus 125 ~~~~~~~~~~gd~lcFnvg-~~lyv~~~~g~~~~~~pi~k~~y~gt~P~cHdfn~~~a~~~g~dllIGf~tGqvq~idp~ 203 (636)
T KOG2394|consen 125 IVTNTNQSGKGDRLCFNVG-RELYVYSYRGAADLSKPIDKREYKGTSPTCHDFNSFTATPKGLDLLIGFTTGQVQLIDPI 203 (636)
T ss_pred ceeeccccCCCCEEEEecC-CeEEEEEccCcchhccchhhhcccCCCCceecccccccCCCCcceEEeeccCceEEecch
Confidence 3555566667777766533 4688888764221 1111111222344445 2345568888888889998876
Q ss_pred CCCceeEEe----eccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeeEEecCCCeeEEEEecCCCEEEEEEcC
Q 003236 628 NPDYSLRTF----TGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIE 703 (837)
Q Consensus 628 ~~~~~~~~~----~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~~~~i~sl~~sp~g~~llags~d 703 (837)
..+. .+.+ .-....|+|+.|-|.++.+|+.+-.+|.+++||... .......+....+++..+......
T Consensus 204 ~~~~-sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~-------~~~~t~p~~~~~k~~~~f~i~t~k 275 (636)
T KOG2394|consen 204 NFEV-SKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEI-------VCGATAPSYQALKDGDQFAILTSK 275 (636)
T ss_pred hhHH-HHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccc-------cccCCCCcccccCCCCeeEEeeee
Confidence 5221 1111 112378999999999888998999999999998821 111112222223344444333221
Q ss_pred CeEEEEECCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCE
Q 003236 704 NYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPS 782 (837)
Q Consensus 704 g~I~iwDl~s~~~~~~l~~h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fspdg~~ 782 (837)
+. .+..++..+..-.+.|+.++|+|||++||+.+ ||.+||||+.+. +.+...+.--+...||+|+|||++
T Consensus 276 sk------~~rNPv~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~---eLlg~mkSYFGGLLCvcWSPDGKy 346 (636)
T KOG2394|consen 276 SK------KTRNPVARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQ---ELLGVMKSYFGGLLCVCWSPDGKY 346 (636)
T ss_pred cc------ccCCccceeEeccccccceeEcCCCceEEEEecCceEEEeeccHH---HHHHHHHhhccceEEEEEcCCccE
Confidence 11 11134444444456899999999999999999 999999999876 444444444577899999999999
Q ss_pred EEEEEcCCeEEEEECCCCcEE-EeccCCCCeeEEEEe
Q 003236 783 LLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAAS 818 (837)
Q Consensus 783 L~sgs~dg~I~IwDl~s~~~~-~l~~h~~~V~sla~s 818 (837)
|++|+.|.-|.||.+..++++ +-.+|...|+.|+|.
T Consensus 347 IvtGGEDDLVtVwSf~erRVVARGqGHkSWVs~VaFD 383 (636)
T KOG2394|consen 347 IVTGGEDDLVTVWSFEERRVVARGQGHKSWVSVVAFD 383 (636)
T ss_pred EEecCCcceEEEEEeccceEEEeccccccceeeEeec
Confidence 999999999999999999998 667999999999998
|
|
| >PRK02889 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=4.3e-13 Score=153.58 Aligned_cols=235 Identities=14% Similarity=0.058 Sum_probs=159.6
Q ss_pred CcEEEEeCCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCC---CeEEEEEcCCCCceeEEeeccccceEEEEEcCCCC
Q 003236 577 KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSAD---RTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKE 653 (837)
Q Consensus 577 g~I~VWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~D---g~I~IWDl~~~~~~~~~~~~h~~~V~sl~fspdg~ 653 (837)
..|.++|.+ +.....+..+...+.+.+|+|||+.|+..+.+ ..|++||+.++.. ..+....+.+.+..|+||+.
T Consensus 176 ~~L~~~D~d-G~~~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~--~~l~~~~g~~~~~~~SPDG~ 252 (427)
T PRK02889 176 YQLQISDAD-GQNAQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRR--RVVANFKGSNSAPAWSPDGR 252 (427)
T ss_pred cEEEEECCC-CCCceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCE--EEeecCCCCccceEECCCCC
Confidence 457777764 44444555677889999999999999887753 3699999987653 23333445667899999999
Q ss_pred eEEEEEeCCCcEEEE--ECCCCeeeeEEecCCCeeEEEEecCCCEEEEEEc-CCe--EEEEECCCCeEEEEEcCCCCCEE
Q 003236 654 DLLCSCDNNSEIRYW--SINNGSCAGVFKCQSGATQMRFQPRLGRILAAAI-ENY--ISILDVETQVCRLKLQGHKNQVH 728 (837)
Q Consensus 654 ~llasgs~Dg~I~vw--Dl~t~~~i~~~~~~~~i~sl~~sp~g~~llags~-dg~--I~iwDl~s~~~~~~l~~h~~~V~ 728 (837)
.++++.+.++...+| |+..+................|+|+|+.|+..+. ++. |+++++.++...... .+.....
T Consensus 253 ~la~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt-~~g~~~~ 331 (427)
T PRK02889 253 TLAVALSRDGNSQIYTVNADGSGLRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQRVT-FTGSYNT 331 (427)
T ss_pred EEEEEEccCCCceEEEEECCCCCcEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEEEe-cCCCCcC
Confidence 888887778765555 5555543332223334567889999999887664 344 444455555432222 2233345
Q ss_pred EEEEcCCCCEEEEEe-CC---eEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCC---eEEEEECCCCc
Q 003236 729 SVCWNTSGEYLASVS-DE---LVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYE---TLELWNMTENK 801 (837)
Q Consensus 729 sl~~spdg~~Lasgs-Dg---~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fspdg~~L~sgs~dg---~I~IwDl~s~~ 801 (837)
..+|+|||++|+..+ ++ .|++||+.++.. . .+.. ........|+|+++.|+.++.++ .+++.++....
T Consensus 332 ~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~---~-~lt~-~~~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~~g~~ 406 (427)
T PRK02889 332 SPRISPDGKLLAYISRVGGAFKLYVQDLATGQV---T-ALTD-TTRDESPSFAPNGRYILYATQQGGRSVLAAVSSDGRI 406 (427)
T ss_pred ceEECCCCCEEEEEEccCCcEEEEEEECCCCCe---E-EccC-CCCccCceECCCCCEEEEEEecCCCEEEEEEECCCCc
Confidence 678999999998776 33 699999987632 1 2222 22346789999999999888655 57777885444
Q ss_pred EEEeccCCCCeeEEEEeCC
Q 003236 802 TLTLSAHDKLVSSLAASTV 820 (837)
Q Consensus 802 ~~~l~~h~~~V~sla~spd 820 (837)
...+..+.+.+...+|+|-
T Consensus 407 ~~~l~~~~g~~~~p~wsp~ 425 (427)
T PRK02889 407 KQRLSVQGGDVREPSWGPF 425 (427)
T ss_pred eEEeecCCCCCCCCccCCC
Confidence 4456667788888899873
|
|
| >KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.8e-13 Score=158.70 Aligned_cols=248 Identities=15% Similarity=0.210 Sum_probs=177.9
Q ss_pred CCCCCeEEEEEcC--CCCEEEEEECCCcEEEEeCC-----CCeEEEEecc-------CCCCeEEEEEcCCCCEEEEEeCC
Q 003236 553 ASTSKVESCHFSP--DGKLLATGGHDKKAVLWCTE-----SFTVKSTLEE-------HTQWITDVRFSPSLSRLATSSAD 618 (837)
Q Consensus 553 ~H~~~V~sl~fSp--dg~~Lasgs~Dg~I~VWd~~-----t~~~~~~l~~-------h~~~I~~l~fspdg~~Latgs~D 618 (837)
.-...|+.+.+-. |..+|++|+.||.|+||+-. +.+.+..+.+ ..+.=.-+.|.....+|++++.-
T Consensus 1107 ~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~ 1186 (1387)
T KOG1517|consen 1107 FPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDV 1186 (1387)
T ss_pred CCCCccceeeeecccchhheeeeccCceEEEecccccccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCe
Confidence 3446789998876 55689999999999999532 2233333221 11112445677766677777778
Q ss_pred CeEEEEEcCCCCceeEEeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCe---eeeEEec-CC--CeeEEEEec
Q 003236 619 RTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS---CAGVFKC-QS--GATQMRFQP 692 (837)
Q Consensus 619 g~I~IWDl~~~~~~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~---~i~~~~~-~~--~i~sl~~sp 692 (837)
..|+|||+.....+...-.+....|+++.-+-.+..++++|..||.|++||.+... .+..++. .. +|..+.+.+
T Consensus 1187 r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~ 1266 (1387)
T KOG1517|consen 1187 RSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQR 1266 (1387)
T ss_pred eEEEEEecccceeEeecccCCCccceeecccccCCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeec
Confidence 89999999986655555556667788888776666789899999999999998643 2333332 22 388888888
Q ss_pred CCC-EEEEEEcCCeEEEEECCCCeE--EEEEcCCC---CCEEEEEEcCCCCEEEEEeCCeEEEEEcCCCCCceeEEE---
Q 003236 693 RLG-RILAAAIENYISILDVETQVC--RLKLQGHK---NQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHE--- 763 (837)
Q Consensus 693 ~g~-~llags~dg~I~iwDl~s~~~--~~~l~~h~---~~V~sl~~spdg~~LasgsDg~I~IwDl~s~~~~~~i~~--- 763 (837)
.|- .|++|+.+|.|++||++.... ...+..|. +.++++..++....+|+|+.+.|+||++..... ..+..
T Consensus 1267 ~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~q~ikIy~~~G~~l-~~~k~n~~ 1345 (1387)
T KOG1517|consen 1267 QGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAPIIASGSAQLIKIYSLSGEQL-NIIKYNPG 1345 (1387)
T ss_pred CCCcceeeeccCCeEEEEecccCcccccceeeeccccCccceeeeeccCCCeeeecCcceEEEEecChhhh-cccccCcc
Confidence 654 599999999999999997422 22222232 359999999999999999999999999875422 11111
Q ss_pred -eecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCc
Q 003236 764 -LSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENK 801 (837)
Q Consensus 764 -~~~~~~~I~sv~fspdg~~L~sgs~dg~I~IwDl~s~~ 801 (837)
.....+.+.+++|+|..-.+++|..|.+|.||......
T Consensus 1346 F~~q~~gs~scL~FHP~~~llAaG~~Ds~V~iYs~~k~~ 1384 (1387)
T KOG1517|consen 1346 FMGQRIGSVSCLAFHPHRLLLAAGSADSTVSIYSCEKPR 1384 (1387)
T ss_pred cccCcCCCcceeeecchhHhhhhccCCceEEEeecCCcC
Confidence 11123567999999999999999999999999876543
|
|
| >KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.57 E-value=2.1e-13 Score=145.60 Aligned_cols=191 Identities=14% Similarity=0.110 Sum_probs=149.2
Q ss_pred EEEEEcCCCCeEEEEEeCCCcEEEEECCC-CeeeeEEecCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEcC
Q 003236 644 MSLDFHPSKEDLLCSCDNNSEIRYWSINN-GSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQG 722 (837)
Q Consensus 644 ~sl~fspdg~~llasgs~Dg~I~vwDl~t-~~~i~~~~~~~~i~sl~~sp~g~~llags~dg~I~iwDl~s~~~~~~l~~ 722 (837)
.+++|+.+|. .+++++.||++|+|+... ........++..|.++.|+||++.|++.+.| ..+||+++++.++.....
T Consensus 148 k~vaf~~~gs-~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t~ 225 (398)
T KOG0771|consen 148 KVVAFNGDGS-KLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARKTP 225 (398)
T ss_pred eEEEEcCCCC-EeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhcCC
Confidence 6789998866 777999999999999554 4445556678899999999999999999999 999999999977666553
Q ss_pred --CCCCEEEEEEcCCC---CEEEEEe---CCeEEEEEcCCCCCce--eEEEeecCCCceEEEEEeCCCCEEEEEEcCCeE
Q 003236 723 --HKNQVHSVCWNTSG---EYLASVS---DELVRVWSIGSGSKGE--CIHELSCTGNKFHSCVFHPTFPSLLVIGCYETL 792 (837)
Q Consensus 723 --h~~~V~sl~~spdg---~~Lasgs---Dg~I~IwDl~s~~~~~--~i~~~~~~~~~I~sv~fspdg~~L~sgs~dg~I 792 (837)
....+..+.|+.|+ .+++.+. -+.|+.||+....... ...........|++++.+++|++++.|+.||.|
T Consensus 226 ~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~dGsV 305 (398)
T KOG0771|consen 226 FSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTMDGSV 305 (398)
T ss_pred cccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEeccCCcE
Confidence 23356678888776 3333333 4577777775543211 222233345689999999999999999999999
Q ss_pred EEEECCCCcEEE--eccCCCCeeEEEEeCCCCEEEEEECCCcEEEe
Q 003236 793 ELWNMTENKTLT--LSAHDKLVSSLAASTVNGMVASASHDKCVKIW 836 (837)
Q Consensus 793 ~IwDl~s~~~~~--l~~h~~~V~sla~spdg~~LaSgs~DG~I~IW 836 (837)
.||+..+.+.+. ...|...|+.+.|+||.+++++.+.|..+.|.
T Consensus 306 ai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~ 351 (398)
T KOG0771|consen 306 AIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVT 351 (398)
T ss_pred EEEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCCceeEE
Confidence 999999998874 45899999999999999999998888877653
|
|
| >KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.56 E-value=3.4e-13 Score=139.26 Aligned_cols=227 Identities=18% Similarity=0.291 Sum_probs=177.0
Q ss_pred eccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCC--ceeEEeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEEC
Q 003236 593 LEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPD--YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSI 670 (837)
Q Consensus 593 l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~~~--~~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl 670 (837)
+.....+|+|.+|++|...+|++.....|.||...... ....++..|...|++|+|.|..++++ +|+.|..-++|..
T Consensus 6 ~~~~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIv-tcs~drnayVw~~ 84 (361)
T KOG1523|consen 6 FHRLLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIV-TCSHDRNAYVWTQ 84 (361)
T ss_pred eeeccCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCcee-EccCCCCcccccc
Confidence 33456789999999999999999999999999988765 35688999999999999999977555 9999999999998
Q ss_pred -CCCe---eeeEEecCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeE----EEEEcCCCCCEEEEEEcCCCCEEEEE
Q 003236 671 -NNGS---CAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVC----RLKLQGHKNQVHSVCWNTSGEYLASV 742 (837)
Q Consensus 671 -~t~~---~i~~~~~~~~i~sl~~sp~g~~llags~dg~I~iwDl~s~~~----~~~l~~h~~~V~sl~~spdg~~Lasg 742 (837)
..++ .+..++++...+++.|+|.++.|++|+....|.||-.+...- ...-+.+.+.|+++.|+|++-+|++|
T Consensus 85 ~~~~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLlaaG 164 (361)
T KOG1523|consen 85 PSGGTWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAAG 164 (361)
T ss_pred CCCCeeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcceeccc
Confidence 4433 233455678999999999999999999999999887764321 22334577889999999999999999
Q ss_pred e-CCeEEEEEcC-----CCC----------CceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCc--EEE
Q 003236 743 S-DELVRVWSIG-----SGS----------KGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENK--TLT 804 (837)
Q Consensus 743 s-Dg~I~IwDl~-----s~~----------~~~~i~~~~~~~~~I~sv~fspdg~~L~sgs~dg~I~IwDl~s~~--~~~ 804 (837)
+ |+..+||..- ... ....+.++....+.+..+.|+|+|..|+..+.|..|.+-|..... ...
T Consensus 165 s~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~p~~~v~~ 244 (361)
T KOG1523|consen 165 STDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAGPSERVQS 244 (361)
T ss_pred ccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecCCCceEEeecCCCchhccc
Confidence 9 9999998742 110 012233444567889999999999999999999999999987765 223
Q ss_pred eccCCCCeeEEEEeCC
Q 003236 805 LSAHDKLVSSLAASTV 820 (837)
Q Consensus 805 l~~h~~~V~sla~spd 820 (837)
.....-+..++.|-.+
T Consensus 245 ~~~~~lP~ls~~~ise 260 (361)
T KOG1523|consen 245 VATAQLPLLSVSWISE 260 (361)
T ss_pred hhhccCCceeeEeecC
Confidence 3333356666666543
|
|
| >KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.56 E-value=4.9e-13 Score=141.87 Aligned_cols=290 Identities=13% Similarity=0.122 Sum_probs=188.9
Q ss_pred EEecCCCCCcccCCCccccCCCeEEcccCCCceEEeecCCCCCCCCccccccccCCCeeeeEEEEecCCCCCeEEEEEcC
Q 003236 486 MFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSP 565 (837)
Q Consensus 486 ~~~~~~~~~~~~~~~~l~~~~~~v~~Gs~D~~v~~w~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~H~~~V~sl~fSp 565 (837)
..+.-..+..++...++.+...++++|+.++.+.+|...+........ -.......+.....+++|...|..++|+|
T Consensus 57 y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lWk~~~~~~~~~d~---e~~~~ke~w~v~k~lr~h~~diydL~Ws~ 133 (434)
T KOG1009|consen 57 YLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLWKQGDVRIFDADT---EADLNKEKWVVKKVLRGHRDDIYDLAWSP 133 (434)
T ss_pred EeecccCCcceeEEEEEcCCcCeeeecCCCceEEEEEecCcCCccccc---hhhhCccceEEEEEecccccchhhhhccC
Confidence 334444466666777777778899999999999999776422110000 00011234556778899999999999999
Q ss_pred CCCEEEEEECCCcEEEEeCCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeEEeecccc-ceE
Q 003236 566 DGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHST-TVM 644 (837)
Q Consensus 566 dg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~~~~~~~~~~~h~~-~V~ 644 (837)
|+.++++++.|..+++||+..|.....+..|...|..++|.|-+.++++-+.|...+++.+..... ...|.. .+.
T Consensus 134 d~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~yvqgvawDpl~qyv~s~s~dr~~~~~~~~~~~~----~~~~~~~~m~ 209 (434)
T KOG1009|consen 134 DSNFLVSGSVDNSVRLWDVHAGQLLAILDDHEHYVQGVAWDPLNQYVASKSSDRHPEGFSAKLKQV----IKRHGLDIMP 209 (434)
T ss_pred CCceeeeeeccceEEEEEeccceeEeeccccccccceeecchhhhhhhhhccCcccceeeeeeeee----eeeeeeeEee
Confidence 999999999999999999999999999999999999999999999999999998777777654221 111110 000
Q ss_pred EEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeeEEecCCCeeEEEEecCCCEEEEEEc----C-----CeEEEEECCC-C
Q 003236 645 SLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAI----E-----NYISILDVET-Q 714 (837)
Q Consensus 645 sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~~~~i~sl~~sp~g~~llags~----d-----g~I~iwDl~s-~ 714 (837)
..++.+. .....++|.=++.+ .-...++|+|+|..+++.+. . +..++|+-.. .
T Consensus 210 ~~~~~~~---------e~~s~rLfhDeTlk--------sFFrRlsfTPdG~llvtPag~~~~g~~~~~n~tYvfsrk~l~ 272 (434)
T KOG1009|consen 210 AKAFNER---------EGKSTRLFHDETLK--------SFFRRLSFTPDGSLLVTPAGLFKVGGGVFRNTSYVFSRKDLK 272 (434)
T ss_pred ecccCCC---------CcceeeeeecCchh--------hhhhhcccCCCCcEEEcccceeeeCCceeeceeEeecccccc
Confidence 1111110 01112222211111 22345666777766665432 1 2234444332 2
Q ss_pred eEEEEEcCCCCCEEEEEEcC------------------CCCEEEEEeCCeEEEEEcCCCCCceeEEEeecCCCceEEEEE
Q 003236 715 VCRLKLQGHKNQVHSVCWNT------------------SGEYLASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVF 776 (837)
Q Consensus 715 ~~~~~l~~h~~~V~sl~~sp------------------dg~~LasgsDg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~f 776 (837)
++...+.....++..+.|+| -+..+++++.+.|+|||..+.....++ -..|-..|+.++|
T Consensus 273 rP~~~lp~~~k~~lavr~~pVy~elrp~~~~~~~~~lpyrlvfaiAt~~svyvydtq~~~P~~~v--~nihy~~iTDiaw 350 (434)
T KOG1009|consen 273 RPAARLPSPKKPALAVRFSPVYYELRPLSSEKFLFVLPYRLVFAIATKNSVYVYDTQTLEPLAVV--DNIHYSAITDIAW 350 (434)
T ss_pred CceeecCCCCcceEEEEeeeeEEEeccccccccccccccceEEEEeecceEEEeccccccceEEE--eeeeeeeecceee
Confidence 34444444444444444443 344567777889999999876432332 3346788999999
Q ss_pred eCCCCEEEEEEcCCeEEEEECCCCc
Q 003236 777 HPTFPSLLVIGCYETLELWNMTENK 801 (837)
Q Consensus 777 spdg~~L~sgs~dg~I~IwDl~s~~ 801 (837)
+++|..+++.+.||...+..++..+
T Consensus 351 s~dg~~l~vSS~DGyCS~vtfe~~e 375 (434)
T KOG1009|consen 351 SDDGSVLLVSSTDGFCSLVTFEPWE 375 (434)
T ss_pred cCCCcEEEEeccCCceEEEEEcchh
Confidence 9999999999999977666655544
|
|
| >KOG3881 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.56 E-value=2.7e-13 Score=143.32 Aligned_cols=261 Identities=15% Similarity=0.204 Sum_probs=199.0
Q ss_pred CCCCeEEEEEcCCCC--EEEEEECCCcEEEEeCCCCeEEEE------eccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEE
Q 003236 554 STSKVESCHFSPDGK--LLATGGHDKKAVLWCTESFTVKST------LEEHTQWITDVRFSPSLSRLATSSADRTVRVWD 625 (837)
Q Consensus 554 H~~~V~sl~fSpdg~--~Lasgs~Dg~I~VWd~~t~~~~~~------l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWD 625 (837)
-...|+.++|--|++ .|...+.|..+..+++....+... .......|..++.. ...|++|-.+|.+.+|.
T Consensus 54 ~~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~~l~~~~I~gl~~~--dg~Litc~~sG~l~~~~ 131 (412)
T KOG3881|consen 54 ELDRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSLDDAKTVSLGTKSIKGLKLA--DGTLITCVSSGNLQVRH 131 (412)
T ss_pred hhhhhhhheeecCCceeEeeccccCcccccccccCCccccccccccccccccccccchhhc--CCEEEEEecCCcEEEEe
Confidence 345678888877665 344444666777777665554433 33455677777665 34788889999999999
Q ss_pred cCCCC---ceeEEeeccccceEEEEEcCCCCeEEEEEeCC--CcEEEEECCCCeeeeEEec----------CCCeeEEEE
Q 003236 626 TENPD---YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN--SEIRYWSINNGSCAGVFKC----------QSGATQMRF 690 (837)
Q Consensus 626 l~~~~---~~~~~~~~h~~~V~sl~fspdg~~llasgs~D--g~I~vwDl~t~~~i~~~~~----------~~~i~sl~~ 690 (837)
...+. ..+..+..+ ..+..+.-++...+++++|+.. ..+.+||+...+.+..-+. +-.++.+.|
T Consensus 132 ~k~~d~hss~l~~la~g-~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~F 210 (412)
T KOG3881|consen 132 DKSGDLHSSKLIKLATG-PGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIRF 210 (412)
T ss_pred ccCCccccccceeeecC-CceeeeccCCCCCceEecCchhcccceeeeecccceeeeeccCCCCccccceeeeeecccee
Confidence 98543 122333322 5577777778888899999988 8999999998866654432 223678889
Q ss_pred ecC--CCEEEEEEcCCeEEEEECCCC-eEEEEEcCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEE-Eee
Q 003236 691 QPR--LGRILAAAIENYISILDVETQ-VCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIH-ELS 765 (837)
Q Consensus 691 sp~--g~~llags~dg~I~iwDl~s~-~~~~~l~~h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~-~~~ 765 (837)
.+. ...|++++.-+.|++||.+.+ +++..|.-.+.+|+++...|++++|+++. -+.+..||++.+ .... .+.
T Consensus 211 l~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~---kl~g~~~k 287 (412)
T KOG3881|consen 211 LEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGG---KLLGCGLK 287 (412)
T ss_pred cCCCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecCCCcEEEEecccchhheecccCc---eeeccccC
Confidence 887 788999999999999999976 68888888889999999999999999999 899999999988 3333 377
Q ss_pred cCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEEEeccCCCCeeEEEEeCC
Q 003236 766 CTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSAHDKLVSSLAASTV 820 (837)
Q Consensus 766 ~~~~~I~sv~fspdg~~L~sgs~dg~I~IwDl~s~~~~~l~~h~~~V~sla~spd 820 (837)
+-.+.|+++..+|..+++++++-|..|+|+|+.+.+++.-..-...+++|-+.++
T Consensus 288 g~tGsirsih~hp~~~~las~GLDRyvRIhD~ktrkll~kvYvKs~lt~il~~~~ 342 (412)
T KOG3881|consen 288 GITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKLLHKVYVKSRLTFILLRDD 342 (412)
T ss_pred CccCCcceEEEcCCCceEEeeccceeEEEeecccchhhhhhhhhccccEEEecCC
Confidence 7789999999999999999999999999999999777644444556677766543
|
|
| >PRK02889 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.3e-12 Score=149.76 Aligned_cols=223 Identities=17% Similarity=0.170 Sum_probs=152.0
Q ss_pred EecCCCCCeEEEEEcCCCCEEEEEECC---CcEEEEeCCCCeEEEEeccCCCCeEEEEEcCCCCEEE-EEeCCCeEEEEE
Q 003236 550 LIPASTSKVESCHFSPDGKLLATGGHD---KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLA-TSSADRTVRVWD 625 (837)
Q Consensus 550 ~l~~H~~~V~sl~fSpdg~~Lasgs~D---g~I~VWd~~t~~~~~~l~~h~~~I~~l~fspdg~~La-tgs~Dg~I~IWD 625 (837)
.+..+...|.+.+|+|||+.|+..+.+ ..|++||+.+++... +....+.+.+.+|+|||+.|+ +.+.++...||.
T Consensus 190 ~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~-l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~ 268 (427)
T PRK02889 190 SALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV-VANFKGSNSAPAWSPDGRTLAVALSRDGNSQIYT 268 (427)
T ss_pred EeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE-eecCCCCccceEECCCCCEEEEEEccCCCceEEE
Confidence 344677889999999999999887743 359999999886653 333445677899999999886 466788766666
Q ss_pred cCCCCceeEEeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEE--CCCCeeeeEEecCCCeeEEEEecCCCEEEEEEcC
Q 003236 626 TENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWS--INNGSCAGVFKCQSGATQMRFQPRLGRILAAAIE 703 (837)
Q Consensus 626 l~~~~~~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwD--l~t~~~i~~~~~~~~i~sl~~sp~g~~llags~d 703 (837)
++........+..+...+....|+|||..+++++..++...+|. +.++................|+|+|++|+..+.+
T Consensus 269 ~d~~~~~~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt~~g~~~~~~~~SpDG~~Ia~~s~~ 348 (427)
T PRK02889 269 VNADGSGLRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQRVTFTGSYNTSPRISPDGKLLAYISRV 348 (427)
T ss_pred EECCCCCcEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEEEecCCCCcCceEECCCCCEEEEEEcc
Confidence 54322224555556666678899999998887766566666664 4555433332222334567899999999887765
Q ss_pred C---eEEEEECCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEe--CC--eEEEEEcCCCCCceeEEEeecCCCceEEEEE
Q 003236 704 N---YISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS--DE--LVRVWSIGSGSKGECIHELSCTGNKFHSCVF 776 (837)
Q Consensus 704 g---~I~iwDl~s~~~~~~l~~h~~~V~sl~~spdg~~Lasgs--Dg--~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~f 776 (837)
+ .|.+||+.++..... .. ......+.|+|||++|+.++ .+ .+.+.++. + .....+..+.+.+...+|
T Consensus 349 ~g~~~I~v~d~~~g~~~~l-t~-~~~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~~-g---~~~~~l~~~~g~~~~p~w 422 (427)
T PRK02889 349 GGAFKLYVQDLATGQVTAL-TD-TTRDESPSFAPNGRYILYATQQGGRSVLAAVSSD-G---RIKQRLSVQGGDVREPSW 422 (427)
T ss_pred CCcEEEEEEECCCCCeEEc-cC-CCCccCceECCCCCEEEEEEecCCCEEEEEEECC-C---CceEEeecCCCCCCCCcc
Confidence 4 699999988765433 22 23446789999999988877 33 46666663 2 233344445566777777
Q ss_pred eCC
Q 003236 777 HPT 779 (837)
Q Consensus 777 spd 779 (837)
+|-
T Consensus 423 sp~ 425 (427)
T PRK02889 423 GPF 425 (427)
T ss_pred CCC
Confidence 764
|
|
| >KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.55 E-value=2e-12 Score=142.35 Aligned_cols=267 Identities=19% Similarity=0.290 Sum_probs=175.4
Q ss_pred CCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEeccCCCCeEEEEEcCCCCEEEEE-----eC-----CCeEEEEE
Q 003236 556 SKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATS-----SA-----DRTVRVWD 625 (837)
Q Consensus 556 ~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latg-----s~-----Dg~I~IWD 625 (837)
.++...++|++|+++|.+. +..|+|++..++..+.+...- .++++.|+|.+.+|.|= .. ...+.+|+
T Consensus 35 ~~~~v~~~S~~G~lfA~~~-~~~v~i~~~~~~~~~lt~~~~--~~~~L~fSP~g~yL~T~e~~~i~~~~~~~~pn~~v~~ 111 (566)
T KOG2315|consen 35 RPCNVFAYSNNGRLFAYSD-NQVVKVFEIATLKVVLCVELK--KTYDLLFSPKGNYLLTWEPWAIYGPKNASNPNVLVYN 111 (566)
T ss_pred CcceeEEEcCCCcEEEEEc-CCeEEEEEccCCcEEEEeccc--eeeeeeecccccccccccccccccCCCCCCCceeeee
Confidence 3477889999999988875 578999999888655444322 78999999999998762 11 23577999
Q ss_pred cCCCCceeEEeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeeEEecCCCee-------------------
Q 003236 626 TENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGAT------------------- 686 (837)
Q Consensus 626 l~~~~~~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~~~~i~------------------- 686 (837)
+++ ......+..-...-+++.|+.|.. + ++--..+.+.+|++.+.+.+...-+..+++
T Consensus 112 vet-~~~~s~~q~k~Q~~W~~qfs~dEs-l-~arlv~nev~f~~~~~f~~~~~kl~~~~i~~f~lSpgp~~~~vAvyvPe 188 (566)
T KOG2315|consen 112 VET-GVQRSQIQKKMQNGWVPQFSIDES-L-AARLVSNEVQFYDLGSFKTIQHKLSVSGITMLSLSPGPEPPFVAVYVPE 188 (566)
T ss_pred ecc-ceehhheehhhhcCcccccccchh-h-hhhhhcceEEEEecCCccceeeeeeccceeeEEecCCCCCceEEEEccC
Confidence 998 333333332222225777777743 2 122224567777665533221111122222
Q ss_pred ---------------------------------EEEEecCCCEEEE-EEc--C---------CeEEEEECCCCeEEEEEc
Q 003236 687 ---------------------------------QMRFQPRLGRILA-AAI--E---------NYISILDVETQVCRLKLQ 721 (837)
Q Consensus 687 ---------------------------------sl~~sp~g~~lla-gs~--d---------g~I~iwDl~s~~~~~~l~ 721 (837)
.+.|++.+.-|++ ++. | ..++++++....+...+.
T Consensus 189 ~kGaPa~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L~ 268 (566)
T KOG2315|consen 189 KKGAPASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPLL 268 (566)
T ss_pred CCCCCcEEEEeccccccccchhhhccccccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEEecC
Confidence 2344444433222 211 1 246666666434444443
Q ss_pred CCCCCEEEEEEcCCCCEEEEEe---CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCC---eEEEE
Q 003236 722 GHKNQVHSVCWNTSGEYLASVS---DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYE---TLELW 795 (837)
Q Consensus 722 ~h~~~V~sl~~spdg~~Lasgs---Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fspdg~~L~sgs~dg---~I~Iw 795 (837)
..++|++++|+++++-++++. -.++.|||++.. .+.. ...++-.++-|+|.|++|+.+|.++ .|.||
T Consensus 269 -k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~~----~v~d--f~egpRN~~~fnp~g~ii~lAGFGNL~G~mEvw 341 (566)
T KOG2315|consen 269 -KEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRGK----PVFD--FPEGPRNTAFFNPHGNIILLAGFGNLPGDMEVW 341 (566)
T ss_pred -CCCCceEEEECCCCCEEEEEEecccceEEEEcCCCC----EeEe--CCCCCccceEECCCCCEEEEeecCCCCCceEEE
Confidence 478999999999998777765 568999998653 3433 3467788999999999999998864 89999
Q ss_pred ECCCCcEEE-eccCCCCeeEEEEeCCCCEEEEEEC------CCcEEEeC
Q 003236 796 NMTENKTLT-LSAHDKLVSSLAASTVNGMVASASH------DKCVKIWK 837 (837)
Q Consensus 796 Dl~s~~~~~-l~~h~~~V~sla~spdg~~LaSgs~------DG~I~IWd 837 (837)
|+.+.+++. +... .-+-+.|+|||.+|+|+.. |+.++||+
T Consensus 342 Dv~n~K~i~~~~a~--~tt~~eW~PdGe~flTATTaPRlrvdNg~Kiwh 388 (566)
T KOG2315|consen 342 DVPNRKLIAKFKAA--NTTVFEWSPDGEYFLTATTAPRLRVDNGIKIWH 388 (566)
T ss_pred eccchhhccccccC--CceEEEEcCCCcEEEEEeccccEEecCCeEEEE
Confidence 999977773 3333 2345799999999999874 78899995
|
|
| >PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3 | Back alignment and domain information |
|---|
Probab=99.55 E-value=4.4e-11 Score=133.16 Aligned_cols=268 Identities=13% Similarity=0.169 Sum_probs=183.7
Q ss_pred EEEEECC----CcEEEEeC--CCCeEEEEe-ccCCCCeEEEEEcCCCCEEEEEeC----CCeEEEEEcCCCCcee---EE
Q 003236 570 LATGGHD----KKAVLWCT--ESFTVKSTL-EEHTQWITDVRFSPSLSRLATSSA----DRTVRVWDTENPDYSL---RT 635 (837)
Q Consensus 570 Lasgs~D----g~I~VWd~--~t~~~~~~l-~~h~~~I~~l~fspdg~~Latgs~----Dg~I~IWDl~~~~~~~---~~ 635 (837)
+++|+.+ +.|++|++ ++++....- .........++++|++++|+++.. ++.|..|++......+ ..
T Consensus 2 ~~vgsy~~~~~~gI~~~~~d~~~g~l~~~~~~~~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~ 81 (345)
T PF10282_consen 2 LYVGSYTNGKGGGIYVFRFDEETGTLTLVQTVAEGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNS 81 (345)
T ss_dssp EEEEECCSSSSTEEEEEEEETTTTEEEEEEEEEESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEE
T ss_pred EEEEcCCCCCCCcEEEEEEcCCCCCceEeeeecCCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeee
Confidence 4566665 68988877 455443221 123455678999999999999887 5799999988752112 22
Q ss_pred eeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCC-CeeeeE---Ee-----------cCCCeeEEEEecCCCEEEEE
Q 003236 636 FTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN-GSCAGV---FK-----------CQSGATQMRFQPRLGRILAA 700 (837)
Q Consensus 636 ~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t-~~~i~~---~~-----------~~~~i~sl~~sp~g~~llag 700 (837)
..........++++|++..++++...+|.|.++++.. +..... +. ......++.++|+++++++.
T Consensus 82 ~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~ 161 (345)
T PF10282_consen 82 VPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVP 161 (345)
T ss_dssp EEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEE
T ss_pred eccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEE
Confidence 2223455678999999998888888899999999987 443332 21 12457899999999999888
Q ss_pred Ec-CCeEEEEECCCCe--E--EEEEc-CCCCCEEEEEEcCCCCEEEEEe--CCeEEEEEcCCC-CCceeEEEeecC----
Q 003236 701 AI-ENYISILDVETQV--C--RLKLQ-GHKNQVHSVCWNTSGEYLASVS--DELVRVWSIGSG-SKGECIHELSCT---- 767 (837)
Q Consensus 701 s~-dg~I~iwDl~s~~--~--~~~l~-~h~~~V~sl~~spdg~~Lasgs--Dg~I~IwDl~s~-~~~~~i~~~~~~---- 767 (837)
.. ...|.+|++.... . ...+. ......+.++|+|+++++++.. ++.|.+|++... .....+..+...
T Consensus 162 dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~ 241 (345)
T PF10282_consen 162 DLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGF 241 (345)
T ss_dssp ETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTS
T ss_pred ecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccc
Confidence 76 4689999987654 2 22222 3456788999999999998877 889999999822 122333333321
Q ss_pred --CCceEEEEEeCCCCEEEEEEc-CCeEEEEECC--CCcEE---EeccCCCCeeEEEEeCCCCEEEEEE-CCCcEEEeC
Q 003236 768 --GNKFHSCVFHPTFPSLLVIGC-YETLELWNMT--ENKTL---TLSAHDKLVSSLAASTVNGMVASAS-HDKCVKIWK 837 (837)
Q Consensus 768 --~~~I~sv~fspdg~~L~sgs~-dg~I~IwDl~--s~~~~---~l~~h~~~V~sla~spdg~~LaSgs-~DG~I~IWd 837 (837)
......++++|||++|+++.. .+.|.+|++. ++++. .+.........++++|+|++|++++ .++.|.+|+
T Consensus 242 ~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~ 320 (345)
T PF10282_consen 242 TGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVFD 320 (345)
T ss_dssp CSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTEEEEEE
T ss_pred cccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCeEEEEE
Confidence 125788999999999998875 4589999983 34443 2333345589999999999999887 556888874
|
1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H. |
| >PRK03629 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.4e-12 Score=149.40 Aligned_cols=220 Identities=17% Similarity=0.162 Sum_probs=154.3
Q ss_pred ecCCCCCeEEEEEcCCCCEEEEEEC---CCcEEEEeCCCCeEEEEeccCCCCeEEEEEcCCCCEEEEE-eCCC--eEEEE
Q 003236 551 IPASTSKVESCHFSPDGKLLATGGH---DKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATS-SADR--TVRVW 624 (837)
Q Consensus 551 l~~H~~~V~sl~fSpdg~~Lasgs~---Dg~I~VWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latg-s~Dg--~I~IW 624 (837)
+..+...+.+.+|||||+.|+..+. +..|++|++.+++.... ....+.+..++|+|||+.|+.. +.+| .|++|
T Consensus 194 lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l-~~~~~~~~~~~~SPDG~~La~~~~~~g~~~I~~~ 272 (429)
T PRK03629 194 VHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQV-ASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVM 272 (429)
T ss_pred eecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEc-cCCCCCcCCeEECCCCCEEEEEEcCCCCcEEEEE
Confidence 4456678999999999999887643 35799999988764432 2233445678999999988865 4444 58999
Q ss_pred EcCCCCceeEEeeccccceEEEEEcCCCCeEEEEEeCCCc--EEEEECCCCeeeeEEecCCCeeEEEEecCCCEEEEEEc
Q 003236 625 DTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSE--IRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAI 702 (837)
Q Consensus 625 Dl~~~~~~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~--I~vwDl~t~~~i~~~~~~~~i~sl~~sp~g~~llags~ 702 (837)
|+.++. ...+..+...+....|+|+++.++++...++. |+++|+.++................|+|+|+.|+..+.
T Consensus 273 d~~tg~--~~~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~~lt~~~~~~~~~~~SpDG~~Ia~~~~ 350 (429)
T PRK03629 273 DLASGQ--IRQVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQRITWEGSQNQDADVSSDGKFMVMVSS 350 (429)
T ss_pred ECCCCC--EEEccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeEEeecCCCCccCEEECCCCCEEEEEEc
Confidence 998765 34444455677899999999988777665554 55557776655443333344567899999999988765
Q ss_pred C---CeEEEEECCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEe-CC---eEEEEEcCCCCCceeEEEeecCCCceEEEE
Q 003236 703 E---NYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DE---LVRVWSIGSGSKGECIHELSCTGNKFHSCV 775 (837)
Q Consensus 703 d---g~I~iwDl~s~~~~~~l~~h~~~V~sl~~spdg~~Lasgs-Dg---~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~ 775 (837)
+ ..|.+||+.++.... +.. ........|+|||++|+.++ ++ .+.++++... ....+..+...+...+
T Consensus 351 ~~g~~~I~~~dl~~g~~~~-Lt~-~~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~~G~----~~~~l~~~~~~~~~p~ 424 (429)
T PRK03629 351 NGGQQHIAKQDLATGGVQV-LTD-TFLDETPSIAPNGTMVIYSSSQGMGSVLNLVSTDGR----FKARLPATDGQVKFPA 424 (429)
T ss_pred cCCCceEEEEECCCCCeEE-eCC-CCCCCCceECCCCCEEEEEEcCCCceEEEEEECCCC----CeEECccCCCCcCCcc
Confidence 4 368899998876443 332 12345678999999998887 55 4777777443 3445556677788888
Q ss_pred EeCC
Q 003236 776 FHPT 779 (837)
Q Consensus 776 fspd 779 (837)
|+|-
T Consensus 425 Wsp~ 428 (429)
T PRK03629 425 WSPY 428 (429)
T ss_pred cCCC
Confidence 8873
|
|
| >KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.54 E-value=8.2e-13 Score=137.31 Aligned_cols=277 Identities=17% Similarity=0.309 Sum_probs=189.4
Q ss_pred CCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCe-----EEEEeccCC------------CCeEEEEEcCCC--CEEEEE
Q 003236 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFT-----VKSTLEEHT------------QWITDVRFSPSL--SRLATS 615 (837)
Q Consensus 555 ~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~-----~~~~l~~h~------------~~I~~l~fspdg--~~Latg 615 (837)
.+-|.+|.|..+|.+||||..+|.|.+|.-+... ....+..|. ..|..+.|.+++ ..++..
T Consensus 25 adiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLls 104 (433)
T KOG1354|consen 25 ADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLS 104 (433)
T ss_pred hcceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEe
Confidence 4568999999999999999999999999643221 233343332 458899999864 467778
Q ss_pred eCCCeEEEEEcCCCCce----------------------------------eEE-eeccccceEEEEEcCCCCeEEEEEe
Q 003236 616 SADRTVRVWDTENPDYS----------------------------------LRT-FTGHSTTVMSLDFHPSKEDLLCSCD 660 (837)
Q Consensus 616 s~Dg~I~IWDl~~~~~~----------------------------------~~~-~~~h~~~V~sl~fspdg~~llasgs 660 (837)
..|++|++|.+...... .+. -..|+..|.+|.++.|...++ +++
T Consensus 105 tNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~l-SAD 183 (433)
T KOG1354|consen 105 TNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFL-SAD 183 (433)
T ss_pred cCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEe-ecc
Confidence 89999999987643211 111 135888899999999987665 554
Q ss_pred CCCcEEEEECCCCe-eeeEEec--------CCCeeEEEEecCC-CEEEEEEcCCeEEEEECCCCeE------EEE-----
Q 003236 661 NNSEIRYWSINNGS-CAGVFKC--------QSGATQMRFQPRL-GRILAAAIENYISILDVETQVC------RLK----- 719 (837)
Q Consensus 661 ~Dg~I~vwDl~t~~-~i~~~~~--------~~~i~sl~~sp~g-~~llags~dg~I~iwDl~s~~~------~~~----- 719 (837)
|-.|.+|+++--. +...... ..-|++..|+|.. +.++..+..|.|++.|++.... +..
T Consensus 184 -dLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEepedp 262 (433)
T KOG1354|consen 184 -DLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPEDP 262 (433)
T ss_pred -ceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhccccCC
Confidence 8899999987432 2222221 1237888999964 5566777889999999984311 111
Q ss_pred -----EcCCCCCEEEEEEcCCCCEEEEEeCCeEEEEEcCCCCCceeEEEeecCC---------------CceEEEEEeCC
Q 003236 720 -----LQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCTG---------------NKFHSCVFHPT 779 (837)
Q Consensus 720 -----l~~h~~~V~sl~~spdg~~LasgsDg~I~IwDl~s~~~~~~i~~~~~~~---------------~~I~sv~fspd 779 (837)
|.+--..|..+.|+.+|+|+++-.--+|+|||+.... .++.++..|. ..-..|+|+.+
T Consensus 263 ~~rsffseiIsSISDvKFs~sGryilsRDyltvk~wD~nme~--~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg~ 340 (433)
T KOG1354|consen 263 SSRSFFSEIISSISDVKFSHSGRYILSRDYLTVKLWDLNMEA--KPVETYPVHEYLRSKLCSLYENDAIFDKFECSWSGN 340 (433)
T ss_pred cchhhHHHHhhhhhceEEccCCcEEEEeccceeEEEeccccC--CcceEEeehHhHHHHHHHHhhccchhheeEEEEcCC
Confidence 1112246788999999999998777899999996543 3333333332 12356899999
Q ss_pred CCEEEEEEcCCeEEEEECCCCcEE--Eec--------------------cC-------------CCCeeEEEEeCCCCEE
Q 003236 780 FPSLLVIGCYETLELWNMTENKTL--TLS--------------------AH-------------DKLVSSLAASTVNGMV 824 (837)
Q Consensus 780 g~~L~sgs~dg~I~IwDl~s~~~~--~l~--------------------~h-------------~~~V~sla~spdg~~L 824 (837)
+.++++|+..+.+++|++..|... ++. +. ...|...+|+|..+.|
T Consensus 341 ~~~v~TGsy~n~frvf~~~~gsk~d~tl~asr~~~~~~~~~k~~~V~~~g~r~~~~~~vd~ldf~kkilh~aWhp~en~i 420 (433)
T KOG1354|consen 341 DSYVMTGSYNNVFRVFNLARGSKEDFTLEASRKNMKPRKVLKLRLVSSSGKRKRDEISVDALDFRKKILHTAWHPKENSI 420 (433)
T ss_pred cceEecccccceEEEecCCCCcceeecccccccCCcccccccceeeecCCCccccccccchhhhhhHHHhhccCCcccee
Confidence 999999999999999996544321 000 00 1124456899999999
Q ss_pred EEEECCCcEEEe
Q 003236 825 ASASHDKCVKIW 836 (837)
Q Consensus 825 aSgs~DG~I~IW 836 (837)
|.+.... ++||
T Consensus 421 a~aatnn-lyif 431 (433)
T KOG1354|consen 421 AVAATNN-LYIF 431 (433)
T ss_pred eeeecCc-eEEe
Confidence 8887654 5554
|
|
| >PRK04922 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.1e-12 Score=150.71 Aligned_cols=221 Identities=19% Similarity=0.188 Sum_probs=155.7
Q ss_pred EEecCCCCCeEEEEEcCCCCEEEEEECC---CcEEEEeCCCCeEEEEeccCCCCeEEEEEcCCCCEEE-EEeCCC--eEE
Q 003236 549 QLIPASTSKVESCHFSPDGKLLATGGHD---KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLA-TSSADR--TVR 622 (837)
Q Consensus 549 ~~l~~H~~~V~sl~fSpdg~~Lasgs~D---g~I~VWd~~t~~~~~~l~~h~~~I~~l~fspdg~~La-tgs~Dg--~I~ 622 (837)
+.+..|...|.+.+|+|||+.|+.++.+ ..|++||+.+++... +..+.+...+++|+|||+.|+ +.+.+| .|+
T Consensus 197 ~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~-l~~~~g~~~~~~~SpDG~~l~~~~s~~g~~~Iy 275 (433)
T PRK04922 197 QTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQREL-VASFRGINGAPSFSPDGRRLALTLSRDGNPEIY 275 (433)
T ss_pred eEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEE-eccCCCCccCceECCCCCEEEEEEeCCCCceEE
Confidence 4455677789999999999999988743 469999998876543 333455566889999999775 445555 599
Q ss_pred EEEcCCCCceeEEeeccccceEEEEEcCCCCeEEEEEeCCCc--EEEEECCCCeeeeEEecCCCeeEEEEecCCCEEEEE
Q 003236 623 VWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSE--IRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAA 700 (837)
Q Consensus 623 IWDl~~~~~~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~--I~vwDl~t~~~i~~~~~~~~i~sl~~sp~g~~llag 700 (837)
+||+.++. +..+..+.......+|+|++..++++...+|. |+++|+.+++..............+|+|++++|+..
T Consensus 276 ~~d~~~g~--~~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~lt~~g~~~~~~~~SpDG~~Ia~~ 353 (433)
T PRK04922 276 VMDLGSRQ--LTRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAERLTFQGNYNARASVSPDGKKIAMV 353 (433)
T ss_pred EEECCCCC--eEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEEeecCCCCccCEEECCCCCEEEEE
Confidence 99998765 44555565566789999999988877665655 777788776654433333345578999999999887
Q ss_pred EcCC---eEEEEECCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEe-C-C--eEEEEEcCCCCCceeEEEeecCCCceEE
Q 003236 701 AIEN---YISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-D-E--LVRVWSIGSGSKGECIHELSCTGNKFHS 773 (837)
Q Consensus 701 s~dg---~I~iwDl~s~~~~~~l~~h~~~V~sl~~spdg~~Lasgs-D-g--~I~IwDl~s~~~~~~i~~~~~~~~~I~s 773 (837)
+.++ .|.+||+.++... .+. +......+.|+|||++|+..+ + + .|.++++... ....+..+.+.+..
T Consensus 354 ~~~~~~~~I~v~d~~~g~~~-~Lt-~~~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~g~----~~~~l~~~~g~~~~ 427 (433)
T PRK04922 354 HGSGGQYRIAVMDLSTGSVR-TLT-PGSLDESPSFAPNGSMVLYATREGGRGVLAAVSTDGR----VRQRLVSADGEVRE 427 (433)
T ss_pred ECCCCceeEEEEECCCCCeE-ECC-CCCCCCCceECCCCCEEEEEEecCCceEEEEEECCCC----ceEEcccCCCCCCC
Confidence 6543 6999999887655 333 333455779999999888766 2 2 6778887543 33344444556666
Q ss_pred EEEeC
Q 003236 774 CVFHP 778 (837)
Q Consensus 774 v~fsp 778 (837)
.+|+|
T Consensus 428 p~wsp 432 (433)
T PRK04922 428 PAWSP 432 (433)
T ss_pred CccCC
Confidence 77776
|
|
| >KOG2394 consensus WD40 protein DMR-N9 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.53 E-value=8.3e-13 Score=144.09 Aligned_cols=170 Identities=18% Similarity=0.263 Sum_probs=130.7
Q ss_pred cCCCCEEEEEECCCcEEEEeCCCCeEEEEe----ccCCCCeEEEEEcCC-CCEEEEEeCCCeEEEEEcCCCC--------
Q 003236 564 SPDGKLLATGGHDKKAVLWCTESFTVKSTL----EEHTQWITDVRFSPS-LSRLATSSADRTVRVWDTENPD-------- 630 (837)
Q Consensus 564 Spdg~~Lasgs~Dg~I~VWd~~t~~~~~~l----~~h~~~I~~l~fspd-g~~Latgs~Dg~I~IWDl~~~~-------- 630 (837)
.+++--|++|-.-|.|.+.|....+..+.+ .-....|+|+.|.|. ...++++-.+|.+++||.+...
T Consensus 182 ~~~g~dllIGf~tGqvq~idp~~~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~ 261 (636)
T KOG2394|consen 182 TPKGLDLLIGFTTGQVQLIDPINFEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQ 261 (636)
T ss_pred CCCCcceEEeeccCceEEecchhhHHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCccc
Confidence 345556777877888988886552222111 123478999999994 4566677789999999764110
Q ss_pred -------------------ceeEEeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeeEEec-CCCeeEEEE
Q 003236 631 -------------------YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRF 690 (837)
Q Consensus 631 -------------------~~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~-~~~i~sl~~ 690 (837)
.++..+..-.+.|..++|+|||. +||+.+.||.++|||..+.+.+...+. -++..|++|
T Consensus 262 ~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~FS~DG~-~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcW 340 (636)
T KOG2394|consen 262 ALKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAFSPDGK-YLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCW 340 (636)
T ss_pred ccCCCCeeEEeeeeccccCCccceeEeccccccceeEcCCCc-eEEEEecCceEEEeeccHHHHHHHHHhhccceEEEEE
Confidence 11112222345788999999877 666888999999999998877766553 578999999
Q ss_pred ecCCCEEEEEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEcC
Q 003236 691 QPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNT 734 (837)
Q Consensus 691 sp~g~~llags~dg~I~iwDl~s~~~~~~l~~h~~~V~sl~~sp 734 (837)
+|||++|++|++|.-|.||.+...+.+..-.+|+++|..|+|+|
T Consensus 341 SPDGKyIvtGGEDDLVtVwSf~erRVVARGqGHkSWVs~VaFDp 384 (636)
T KOG2394|consen 341 SPDGKYIVTGGEDDLVTVWSFEERRVVARGQGHKSWVSVVAFDP 384 (636)
T ss_pred cCCccEEEecCCcceEEEEEeccceEEEeccccccceeeEeecc
Confidence 99999999999999999999999999999999999999999997
|
|
| >TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB | Back alignment and domain information |
|---|
Probab=99.53 E-value=3.2e-12 Score=145.91 Aligned_cols=232 Identities=16% Similarity=0.132 Sum_probs=161.9
Q ss_pred CcEEEEeCCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCC---CeEEEEEcCCCCceeEEeeccccceEEEEEcCCCC
Q 003236 577 KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSAD---RTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKE 653 (837)
Q Consensus 577 g~I~VWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~D---g~I~IWDl~~~~~~~~~~~~h~~~V~sl~fspdg~ 653 (837)
..|.++|..... ...+..+...+.+.+|+|||++|+.++.+ ..|++||+.++.. ..+..+...+.+++|+|+++
T Consensus 170 ~~l~~~d~~g~~-~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~--~~~~~~~~~~~~~~~spDg~ 246 (417)
T TIGR02800 170 YELQVADYDGAN-PQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQR--EKVASFPGMNGAPAFSPDGS 246 (417)
T ss_pred ceEEEEcCCCCC-CEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCE--EEeecCCCCccceEECCCCC
Confidence 368888876443 34455577789999999999999987754 4899999987653 33444556677899999999
Q ss_pred eEEEEEeCCC--cEEEEECCCCeeeeEEecCCCeeEEEEecCCCEEEEEEcC-C--eEEEEECCCCeEEEEEcCCCCCEE
Q 003236 654 DLLCSCDNNS--EIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIE-N--YISILDVETQVCRLKLQGHKNQVH 728 (837)
Q Consensus 654 ~llasgs~Dg--~I~vwDl~t~~~i~~~~~~~~i~sl~~sp~g~~llags~d-g--~I~iwDl~s~~~~~~l~~h~~~V~ 728 (837)
.++++.+.++ .|++||+.++................|+|+++.|+.++.. + .|+++|+.+++.. .+..+...+.
T Consensus 247 ~l~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~-~l~~~~~~~~ 325 (417)
T TIGR02800 247 KLAVSLSKDGNPDIYVMDLDGKQLTRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVR-RLTFRGGYNA 325 (417)
T ss_pred EEEEEECCCCCccEEEEECCCCCEEECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEE-EeecCCCCcc
Confidence 8887776554 5999999887655444433445577899999988877653 2 6888898876543 3444556677
Q ss_pred EEEEcCCCCEEEEEe-CC---eEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCC---eEEEEECCCCc
Q 003236 729 SVCWNTSGEYLASVS-DE---LVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYE---TLELWNMTENK 801 (837)
Q Consensus 729 sl~~spdg~~Lasgs-Dg---~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fspdg~~L~sgs~dg---~I~IwDl~s~~ 801 (837)
.+.|+|++++|+.++ ++ .|.+||+.++.. ..+.. ........|+|++.+|++.+.++ .+++++.....
T Consensus 326 ~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~----~~l~~-~~~~~~p~~spdg~~l~~~~~~~~~~~l~~~~~~g~~ 400 (417)
T TIGR02800 326 SPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGE----RVLTD-TGLDESPSFAPNGRMILYATTRGGRGVLGLVSTDGRF 400 (417)
T ss_pred CeEECCCCCEEEEEEccCCceEEEEEeCCCCCe----EEccC-CCCCCCceECCCCCEEEEEEeCCCcEEEEEEECCCce
Confidence 889999999998887 44 788999877521 12221 12234568999999998887765 56676765544
Q ss_pred EEEeccCCCCeeEEEE
Q 003236 802 TLTLSAHDKLVSSLAA 817 (837)
Q Consensus 802 ~~~l~~h~~~V~sla~ 817 (837)
...+..+.+.+..++|
T Consensus 401 ~~~~~~~~g~~~~~~w 416 (417)
T TIGR02800 401 RARLPLGNGDVREPAW 416 (417)
T ss_pred eeECCCCCCCcCCCCC
Confidence 4444444555555555
|
The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear. |
| >KOG3881 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.1e-12 Score=138.84 Aligned_cols=237 Identities=16% Similarity=0.176 Sum_probs=184.2
Q ss_pred CCCCeEEEEEcCCC--CEEEEEeCCCeEEEEEcCCCCcee-----EEeeccccceEEEEEcCCCCeEEEEEeCCCcEEEE
Q 003236 596 HTQWITDVRFSPSL--SRLATSSADRTVRVWDTENPDYSL-----RTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYW 668 (837)
Q Consensus 596 h~~~I~~l~fspdg--~~Latgs~Dg~I~IWDl~~~~~~~-----~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vw 668 (837)
....|..++|..++ ..|+.++.|-.+..+++......- .........|..++.. +..|++|-.+|.+.+|
T Consensus 54 ~~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~~l~~~~I~gl~~~---dg~Litc~~sG~l~~~ 130 (412)
T KOG3881|consen 54 ELDRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSLDDAKTVSLGTKSIKGLKLA---DGTLITCVSSGNLQVR 130 (412)
T ss_pred hhhhhhhheeecCCceeEeeccccCcccccccccCCccccccccccccccccccccchhhc---CCEEEEEecCCcEEEE
Confidence 34567777776553 345555566667777766544311 1344456677777765 2256688889999999
Q ss_pred ECCCCe----eeeEEecCCCeeEEEEecCCCEEEE-EEcC--CeEEEEECCCCeEEEEEcCC---------CCCEEEEEE
Q 003236 669 SINNGS----CAGVFKCQSGATQMRFQPRLGRILA-AAIE--NYISILDVETQVCRLKLQGH---------KNQVHSVCW 732 (837)
Q Consensus 669 Dl~t~~----~i~~~~~~~~i~sl~~sp~g~~lla-gs~d--g~I~iwDl~s~~~~~~l~~h---------~~~V~sl~~ 732 (837)
..+.+. .+..+....++..+.-++...+|++ |+.+ +.+.|||++..+.+..-+.- .-+++++.|
T Consensus 131 ~~k~~d~hss~l~~la~g~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~F 210 (412)
T KOG3881|consen 131 HDKSGDLHSSKLIKLATGPGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIRF 210 (412)
T ss_pred eccCCccccccceeeecCCceeeeccCCCCCceEecCchhcccceeeeecccceeeeeccCCCCccccceeeeeecccee
Confidence 998543 3445555677888888887776665 7777 78999999988766654432 225778899
Q ss_pred cCC--CCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE--Eecc
Q 003236 733 NTS--GEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL--TLSA 807 (837)
Q Consensus 733 spd--g~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fspdg~~L~sgs~dg~I~IwDl~s~~~~--~l~~ 807 (837)
-+. ...|++++ -+.|++||.+... .++..+......++++...|++++|+++...+.+..||++.++.. .+.+
T Consensus 211 l~g~~~~~fat~T~~hqvR~YDt~~qR--RPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg 288 (412)
T KOG3881|consen 211 LEGSPNYKFATITRYHQVRLYDTRHQR--RPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGLKG 288 (412)
T ss_pred cCCCCCceEEEEecceeEEEecCcccC--cceeEeccccCcceeeeecCCCcEEEEecccchhheecccCceeeccccCC
Confidence 887 78888888 8999999999765 677788888999999999999999999999999999999999988 4778
Q ss_pred CCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 003236 808 HDKLVSSLAASTVNGMVASASHDKCVKIWK 837 (837)
Q Consensus 808 h~~~V~sla~spdg~~LaSgs~DG~I~IWd 837 (837)
..+.|++|..+|...+|++|+-|..|+|+|
T Consensus 289 ~tGsirsih~hp~~~~las~GLDRyvRIhD 318 (412)
T KOG3881|consen 289 ITGSIRSIHCHPTHPVLASCGLDRYVRIHD 318 (412)
T ss_pred ccCCcceEEEcCCCceEEeeccceeEEEee
Confidence 899999999999999999999999999997
|
|
| >PRK05137 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.51 E-value=6.4e-12 Score=144.39 Aligned_cols=204 Identities=13% Similarity=0.176 Sum_probs=148.8
Q ss_pred CeEEEEEcCCCCceeEEeeccccceEEEEEcCCCCeEEEEEeC--CCcEEEEECCCCeeeeEEecCCCeeEEEEecCCCE
Q 003236 619 RTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDN--NSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGR 696 (837)
Q Consensus 619 g~I~IWDl~~~~~~~~~~~~h~~~V~sl~fspdg~~llasgs~--Dg~I~vwDl~t~~~i~~~~~~~~i~sl~~sp~g~~ 696 (837)
..|.+||.+... .+.+..|...+.+.+|+|||..++++... +..|++||+.+++..........+....|+|+|+.
T Consensus 182 ~~l~~~d~dg~~--~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~l~~~~g~~~~~~~SPDG~~ 259 (435)
T PRK05137 182 KRLAIMDQDGAN--VRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRELVGNFPGMTFAPRFSPDGRK 259 (435)
T ss_pred eEEEEECCCCCC--cEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEEeecCCCcccCcEECCCCCE
Confidence 378888886543 45667788899999999999877766543 46899999998876555445566778999999998
Q ss_pred EEEE-EcCC--eEEEEECCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEe--CC--eEEEEEcCCCCCceeEEEeecCCC
Q 003236 697 ILAA-AIEN--YISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS--DE--LVRVWSIGSGSKGECIHELSCTGN 769 (837)
Q Consensus 697 llag-s~dg--~I~iwDl~s~~~~~~l~~h~~~V~sl~~spdg~~Lasgs--Dg--~I~IwDl~s~~~~~~i~~~~~~~~ 769 (837)
|+.. ..++ .|++||+.++... .+..+.....+..|+|||+.|+..+ ++ .|++||+.++. ...+.....
T Consensus 260 la~~~~~~g~~~Iy~~d~~~~~~~-~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~----~~~lt~~~~ 334 (435)
T PRK05137 260 VVMSLSQGGNTDIYTMDLRSGTTT-RLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSN----PRRISFGGG 334 (435)
T ss_pred EEEEEecCCCceEEEEECCCCceE-EccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCC----eEEeecCCC
Confidence 7654 4444 5888899887653 4555666677899999999988877 33 68888877652 222333345
Q ss_pred ceEEEEEeCCCCEEEEEEcCC---eEEEEECCCCcEEEeccCCCCeeEEEEeCCCCEEEEEECC
Q 003236 770 KFHSCVFHPTFPSLLVIGCYE---TLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHD 830 (837)
Q Consensus 770 ~I~sv~fspdg~~L~sgs~dg---~I~IwDl~s~~~~~l~~h~~~V~sla~spdg~~LaSgs~D 830 (837)
.+....|+|+|+.|+....++ .|.+||+.++....+. ....+..+.|+|||++|+..+.+
T Consensus 335 ~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~~~lt-~~~~~~~p~~spDG~~i~~~~~~ 397 (435)
T PRK05137 335 RYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGERILT-SGFLVEGPTWAPNGRVIMFFRQT 397 (435)
T ss_pred cccCeEECCCCCEEEEEEcCCCceEEEEEECCCCceEecc-CCCCCCCCeECCCCCEEEEEEcc
Confidence 566789999999998876543 6889998766544332 33457789999999988776543
|
|
| >PRK00178 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.50 E-value=8.7e-12 Score=143.14 Aligned_cols=234 Identities=15% Similarity=0.051 Sum_probs=163.5
Q ss_pred cEEEEeCCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCC---CeEEEEEcCCCCceeEEeeccccceEEEEEcCCCCe
Q 003236 578 KAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSAD---RTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKED 654 (837)
Q Consensus 578 ~I~VWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~D---g~I~IWDl~~~~~~~~~~~~h~~~V~sl~fspdg~~ 654 (837)
.|.++|.+.... ..+..+...+...+|+|||+.|+..+.+ ..|++||+.++.. ..+....+.+....|+|+|+.
T Consensus 180 ~l~~~d~~g~~~-~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~--~~l~~~~g~~~~~~~SpDG~~ 256 (430)
T PRK00178 180 TLQRSDYDGARA-VTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRR--EQITNFEGLNGAPAWSPDGSK 256 (430)
T ss_pred EEEEECCCCCCc-eEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCE--EEccCCCCCcCCeEECCCCCE
Confidence 477788775544 4455577789999999999999877654 3699999987653 333334445667899999998
Q ss_pred EEEEEeCCC--cEEEEECCCCeeeeEEecCCCeeEEEEecCCCEEEEEEcC---CeEEEEECCCCeEEEEEcCCCCCEEE
Q 003236 655 LLCSCDNNS--EIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIE---NYISILDVETQVCRLKLQGHKNQVHS 729 (837)
Q Consensus 655 llasgs~Dg--~I~vwDl~t~~~i~~~~~~~~i~sl~~sp~g~~llags~d---g~I~iwDl~s~~~~~~l~~h~~~V~s 729 (837)
++++.+.++ .|++||+.+++...............|+|+++.++..+.. ..|+++|+.+++...... .......
T Consensus 257 la~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt~-~~~~~~~ 335 (430)
T PRK00178 257 LAFVLSKDGNPEIYVMDLASRQLSRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERVTF-VGNYNAR 335 (430)
T ss_pred EEEEEccCCCceEEEEECCCCCeEEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeec-CCCCccc
Confidence 887776665 6888999988765544444456678899999988877643 368888888776433222 2233446
Q ss_pred EEEcCCCCEEEEEe--CC--eEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCC---eEEEEECCCCcE
Q 003236 730 VCWNTSGEYLASVS--DE--LVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYE---TLELWNMTENKT 802 (837)
Q Consensus 730 l~~spdg~~Lasgs--Dg--~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fspdg~~L~sgs~dg---~I~IwDl~s~~~ 802 (837)
..|+|||++|+..+ ++ .|.+||+.++.. ..+ .. ........|+|+|+.|+..+.++ .|+++++.....
T Consensus 336 ~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~-~~l---t~-~~~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~g~~~ 410 (430)
T PRK00178 336 PRLSADGKTLVMVHRQDGNFHVAAQDLQRGSV-RIL---TD-TSLDESPSVAPNGTMLIYATRQQGRGVLMLVSINGRVR 410 (430)
T ss_pred eEECCCCCEEEEEEccCCceEEEEEECCCCCE-EEc---cC-CCCCCCceECCCCCEEEEEEecCCceEEEEEECCCCce
Confidence 78999999998876 33 588899887632 222 21 11223568999999998877653 688888876655
Q ss_pred EEeccCCCCeeEEEEeCC
Q 003236 803 LTLSAHDKLVSSLAASTV 820 (837)
Q Consensus 803 ~~l~~h~~~V~sla~spd 820 (837)
..+..+.+.+...+|+|-
T Consensus 411 ~~l~~~~g~~~~p~ws~~ 428 (430)
T PRK00178 411 LPLPTAQGEVREPSWSPY 428 (430)
T ss_pred EECcCCCCCcCCCccCCC
Confidence 556566677888888863
|
|
| >PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A | Back alignment and domain information |
|---|
Probab=99.50 E-value=2.5e-11 Score=135.57 Aligned_cols=263 Identities=10% Similarity=0.055 Sum_probs=172.3
Q ss_pred CEE-EEEECCCcEEEEeCCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeEEeeccccceEEE
Q 003236 568 KLL-ATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSL 646 (837)
Q Consensus 568 ~~L-asgs~Dg~I~VWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~sl 646 (837)
+++ ++-..++.|.|.|..+.+.+.++......-..+.|+||++++++++.||.|.++|+.+.+. +..+.. .....++
T Consensus 6 ~l~~V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~-v~~i~~-G~~~~~i 83 (369)
T PF02239_consen 6 NLFYVVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKV-VATIKV-GGNPRGI 83 (369)
T ss_dssp GEEEEEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSE-EEEEE--SSEEEEE
T ss_pred cEEEEEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccE-EEEEec-CCCcceE
Confidence 344 4455689999999999999999976555445678999999999999999999999998774 555553 3456889
Q ss_pred EEcCCCCeEEEEEeCCCcEEEEECCCCeeeeEEecC--------CCeeEEEEecCCCEEEEEEcC-CeEEEEECCCCeEE
Q 003236 647 DFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ--------SGATQMRFQPRLGRILAAAIE-NYISILDVETQVCR 717 (837)
Q Consensus 647 ~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~~--------~~i~sl~~sp~g~~llags~d-g~I~iwDl~s~~~~ 717 (837)
++++||+++++++...+.+.++|.++.+.+..+... ..+..+..++....+++.-.| +.|.+.|....+.+
T Consensus 84 ~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~ 163 (369)
T PF02239_consen 84 AVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNL 163 (369)
T ss_dssp EE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCE
T ss_pred EEcCCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEecccccc
Confidence 999999999989889999999999999999887642 356778888888877766665 89999998765322
Q ss_pred -EEEcCCCCCEEEEEEcCCCCEEEEEe--CCeEEEEEcCCCCCceeEEEeec----CCCceEEEEEeCC----------C
Q 003236 718 -LKLQGHKNQVHSVCWNTSGEYLASVS--DELVRVWSIGSGSKGECIHELSC----TGNKFHSCVFHPT----------F 780 (837)
Q Consensus 718 -~~l~~h~~~V~sl~~spdg~~Lasgs--Dg~I~IwDl~s~~~~~~i~~~~~----~~~~I~sv~fspd----------g 780 (837)
..............|+|+++|++++. ++.|-++|..++ +.+..+.. |..+...+ .+|. +
T Consensus 164 ~~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~---k~v~~i~~g~~p~~~~~~~~-php~~g~vw~~~~~~ 239 (369)
T PF02239_consen 164 KVTTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTG---KLVALIDTGKKPHPGPGANF-PHPGFGPVWATSGLG 239 (369)
T ss_dssp EEEEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTT---EEEEEEE-SSSBEETTEEEE-EETTTEEEEEEEBSS
T ss_pred ceeeecccccccccccCcccceeeecccccceeEEEeeccc---eEEEEeeccccccccccccc-cCCCcceEEeecccc
Confidence 22333456778899999999988776 779999999876 33333321 22222221 2222 2
Q ss_pred CEEEEEEcCCeEEEEECCCCcEEE-eccCCCCeeEEEEeCCCCEEEEE----ECCCcEEEeC
Q 003236 781 PSLLVIGCYETLELWNMTENKTLT-LSAHDKLVSSLAASTVNGMVASA----SHDKCVKIWK 837 (837)
Q Consensus 781 ~~L~sgs~dg~I~IwDl~s~~~~~-l~~h~~~V~sla~spdg~~LaSg----s~DG~I~IWd 837 (837)
...++.-..+.+.+||..+.+.+. +...... ..+..+|++++|.+. ...+.|.|+|
T Consensus 240 ~~~~~~ig~~~v~v~d~~~wkvv~~I~~~G~g-lFi~thP~s~~vwvd~~~~~~~~~v~viD 300 (369)
T PF02239_consen 240 YFAIPLIGTDPVSVHDDYAWKVVKTIPTQGGG-LFIKTHPDSRYVWVDTFLNPDADTVQVID 300 (369)
T ss_dssp SSEEEEEE--TTT-STTTBTSEEEEEE-SSSS---EE--TT-SEEEEE-TT-SSHT-EEEEE
T ss_pred ceecccccCCccccchhhcCeEEEEEECCCCc-ceeecCCCCccEEeeccCCCCCceEEEEE
Confidence 333333334456678888888884 4444444 778889999999988 3447788775
|
... |
| >KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=99.49 E-value=8.7e-12 Score=129.00 Aligned_cols=231 Identities=13% Similarity=0.174 Sum_probs=168.8
Q ss_pred CeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCcee-EEeeccccceEEEEEcCCCCeEEEEEeCC------CcEEEEECC
Q 003236 599 WITDVRFSPSLSRLATSSADRTVRVWDTENPDYSL-RTFTGHSTTVMSLDFHPSKEDLLCSCDNN------SEIRYWSIN 671 (837)
Q Consensus 599 ~I~~l~fspdg~~Latgs~Dg~I~IWDl~~~~~~~-~~~~~h~~~V~sl~fspdg~~llasgs~D------g~I~vwDl~ 671 (837)
...+++|+.|...++++..+| .+||+++--+... +.+....-.+..+-|- .+.+.+.|+.+ ..|.|||=.
T Consensus 7 ~~lsvs~NQD~ScFava~~~G-friyn~~P~ke~~~r~~~~~G~~~veMLfR--~N~laLVGGg~~pky~pNkviIWDD~ 83 (346)
T KOG2111|consen 7 KTLSVSFNQDHSCFAVATDTG-FRIYNCDPFKESASRQFIDGGFKIVEMLFR--SNYLALVGGGSRPKYPPNKVIIWDDL 83 (346)
T ss_pred ceeEEEEccCCceEEEEecCc-eEEEecCchhhhhhhccccCchhhhhHhhh--hceEEEecCCCCCCCCCceEEEEecc
Confidence 345699999999999988777 7999987522211 1111111222222232 23444455433 479999988
Q ss_pred CCeeeeEEecCCCeeEEEEecCCCEEEEEEcCCeEEEEECCC-CeEEEEEcC--CCCCEEEEEEcCCCCEEEEEe--CCe
Q 003236 672 NGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVET-QVCRLKLQG--HKNQVHSVCWNTSGEYLASVS--DEL 746 (837)
Q Consensus 672 t~~~i~~~~~~~~i~sl~~sp~g~~llags~dg~I~iwDl~s-~~~~~~l~~--h~~~V~sl~~spdg~~Lasgs--Dg~ 746 (837)
..+++..+....+|..+.+.++ .++.-.++.|+||...+ .+.++.+.. ....+.+++-..+..+|+.-+ -|.
T Consensus 84 k~~~i~el~f~~~I~~V~l~r~---riVvvl~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~LafPg~k~Gq 160 (346)
T KOG2111|consen 84 KERCIIELSFNSEIKAVKLRRD---RIVVVLENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLLAFPGFKTGQ 160 (346)
T ss_pred cCcEEEEEEeccceeeEEEcCC---eEEEEecCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceEEEcCCCccce
Confidence 8899999999999999999886 44555679999999874 455555543 233455555444556777655 789
Q ss_pred EEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCC-eEEEEECCCCcEE-Eec--cCCCCeeEEEEeCCCC
Q 003236 747 VRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYE-TLELWNMTENKTL-TLS--AHDKLVSSLAASTVNG 822 (837)
Q Consensus 747 I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fspdg~~L~sgs~dg-~I~IwDl~s~~~~-~l~--~h~~~V~sla~spdg~ 822 (837)
|.|-|+...... .-..+..|...|.+++++-+|..+++++..| -|+|||..+|..+ .+. .....|.+|+|||+..
T Consensus 161 vQi~dL~~~~~~-~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp~~s 239 (346)
T KOG2111|consen 161 VQIVDLASTKPN-APSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFSPNSS 239 (346)
T ss_pred EEEEEhhhcCcC-CceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEEEeCCCcc
Confidence 999999876331 3456788999999999999999999999999 5899999999987 332 3346799999999999
Q ss_pred EEEEEECCCcEEEe
Q 003236 823 MVASASHDKCVKIW 836 (837)
Q Consensus 823 ~LaSgs~DG~I~IW 836 (837)
+||++|+-|+|+||
T Consensus 240 ~LavsSdKgTlHiF 253 (346)
T KOG2111|consen 240 WLAVSSDKGTLHIF 253 (346)
T ss_pred EEEEEcCCCeEEEE
Confidence 99999999999997
|
|
| >KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.48 E-value=5.2e-14 Score=151.09 Aligned_cols=231 Identities=15% Similarity=0.173 Sum_probs=190.1
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeEEeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeee
Q 003236 597 TQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCA 676 (837)
Q Consensus 597 ~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i 676 (837)
.-.-+.+.|+.+|++|+.|+..|.|-.+|..+... .....-...|.++.|..+.. +++.+- ...++|||-. |..+
T Consensus 129 eFGPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L--~~Ei~v~Etv~Dv~~LHneq-~~AVAQ-K~y~yvYD~~-GtEl 203 (545)
T KOG1272|consen 129 EFGPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKL--HFEINVMETVRDVTFLHNEQ-FFAVAQ-KKYVYVYDNN-GTEL 203 (545)
T ss_pred ccCCeeeeecCCccEEEecCCccceeeeeccccee--eeeeehhhhhhhhhhhcchH-HHHhhh-hceEEEecCC-CcEE
Confidence 33457889999999999999999999999998663 22223456788999987744 554443 6789999966 7777
Q ss_pred eEEecCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCC
Q 003236 677 GVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSG 755 (837)
Q Consensus 677 ~~~~~~~~i~sl~~sp~g~~llags~dg~I~iwDl~s~~~~~~l~~h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~ 755 (837)
..++....+..+.|.|..-.|++++..|.+...|+.+|+.+..+....+.+..++-+|-+..+-+|. .|+|.+|...+.
T Consensus 204 HClk~~~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~sk 283 (545)
T KOG1272|consen 204 HCLKRHIRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSK 283 (545)
T ss_pred eehhhcCchhhhcccchhheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcCCCceEEecCCCCc
Confidence 7788789999999999988888888899999999999999999988888999999999999998888 999999998776
Q ss_pred CCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEEEeccCCCCeeEEEEeCCCCEEEEEECCCcEEE
Q 003236 756 SKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKI 835 (837)
Q Consensus 756 ~~~~~i~~~~~~~~~I~sv~fspdg~~L~sgs~dg~I~IwDl~s~~~~~l~~h~~~V~sla~spdg~~LaSgs~DG~I~I 835 (837)
+.+..+-+|.++|.++++.++|.++++.+.|..|+|||++....+.......+...+++|..| +++++....|.|
T Consensus 284 ---ePLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~tp~~a~~ls~Sqkg--lLA~~~G~~v~i 358 (545)
T KOG1272|consen 284 ---EPLVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRTPHPASNLSLSQKG--LLALSYGDHVQI 358 (545)
T ss_pred ---chHHHHHhcCCCcceEEECCCCcEEeecccccceeEeeeccccccceeecCCCcccccccccc--ceeeecCCeeee
Confidence 677778899999999999999999999999999999999987755222224567788888655 444555567889
Q ss_pred eC
Q 003236 836 WK 837 (837)
Q Consensus 836 Wd 837 (837)
|.
T Consensus 359 w~ 360 (545)
T KOG1272|consen 359 WK 360 (545)
T ss_pred eh
Confidence 84
|
|
| >KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.47 E-value=2.6e-13 Score=140.15 Aligned_cols=221 Identities=17% Similarity=0.223 Sum_probs=161.7
Q ss_pred EEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeEEeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeeEEec
Q 003236 602 DVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC 681 (837)
Q Consensus 602 ~l~fspdg~~Latgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~ 681 (837)
-++|+|+|+++|+++.- .+.|-|.++-.. ..+...-..|.-|.|..+..++++....++.|.+|++...+-...+..
T Consensus 13 ~c~fSp~g~yiAs~~~y-rlviRd~~tlq~--~qlf~cldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckIde 89 (447)
T KOG4497|consen 13 FCSFSPCGNYIASLSRY-RLVIRDSETLQL--HQLFLCLDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCKIDE 89 (447)
T ss_pred ceeECCCCCeeeeeeee-EEEEeccchhhH--HHHHHHHHHhhheeeeccceeeeeeeeccceEEEEEeecceeEEEecc
Confidence 46799999999999766 788888876442 222223467888999999999999999999999999998887777765
Q ss_pred -CCCeeEEEEecCCCEEEEEE-cCCeEEEEECCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEe--CCeEEEEEcCCCCC
Q 003236 682 -QSGATQMRFQPRLGRILAAA-IENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS--DELVRVWSIGSGSK 757 (837)
Q Consensus 682 -~~~i~sl~~sp~g~~llags-~dg~I~iwDl~s~~~~~~l~~h~~~V~sl~~spdg~~Lasgs--Dg~I~IwDl~s~~~ 757 (837)
..++..++|+|+|+.|+..+ .+-.|.+|.+.+.+.... .-.+..+..++|+|||++.+.++ |. .-.+.+...+.
T Consensus 90 g~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~-~~pK~~~kg~~f~~dg~f~ai~sRrDC-kdyv~i~~c~~ 167 (447)
T KOG4497|consen 90 GQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLL-PHPKTNVKGYAFHPDGQFCAILSRRDC-KDYVQISSCKA 167 (447)
T ss_pred CCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEEe-cccccCceeEEECCCCceeeeeecccH-HHHHHHHhhHH
Confidence 56799999999998776655 588999999998766543 22345678999999999999988 33 22222222222
Q ss_pred ceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEEEeccCCCCeeEEEEeCCCCEEEEEECCCcEEEe
Q 003236 758 GECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIW 836 (837)
Q Consensus 758 ~~~i~~~~~~~~~I~sv~fspdg~~L~sgs~dg~I~IwDl~s~~~~~l~~h~~~V~sla~spdg~~LaSgs~DG~I~IW 836 (837)
...+..+....-..+.+.|+|||..|++ ||---.-.+....-.-.|..++|+|.+++|+.|+.|+.++|-
T Consensus 168 W~ll~~f~~dT~DltgieWsPdg~~laV---------wd~~Leykv~aYe~~lG~k~v~wsP~~qflavGsyD~~lrvl 237 (447)
T KOG4497|consen 168 WILLKEFKLDTIDLTGIEWSPDGNWLAV---------WDNVLEYKVYAYERGLGLKFVEWSPCNQFLAVGSYDQMLRVL 237 (447)
T ss_pred HHHHHhcCCCcccccCceECCCCcEEEE---------ecchhhheeeeeeeccceeEEEeccccceEEeeccchhhhhh
Confidence 2444555555667788999999986554 543222222222333568899999999999999999998874
|
|
| >PRK04792 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.47 E-value=1.4e-11 Score=141.67 Aligned_cols=233 Identities=14% Similarity=0.089 Sum_probs=158.9
Q ss_pred cEEEEeCCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCC---CeEEEEEcCCCCceeEEeeccccceEEEEEcCCCCe
Q 003236 578 KAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSAD---RTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKED 654 (837)
Q Consensus 578 ~I~VWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~D---g~I~IWDl~~~~~~~~~~~~h~~~V~sl~fspdg~~ 654 (837)
.|.++|.+.... ..+..+...+.+..|+|||+.|+..+.+ ..|++||+.+++. ..+...........|+|||+.
T Consensus 199 ~l~i~d~dG~~~-~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~--~~lt~~~g~~~~~~wSPDG~~ 275 (448)
T PRK04792 199 QLMIADYDGYNE-QMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVR--EKVTSFPGINGAPRFSPDGKK 275 (448)
T ss_pred EEEEEeCCCCCc-eEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCe--EEecCCCCCcCCeeECCCCCE
Confidence 577778665443 3455567789999999999998877543 2688999987653 222222334457899999998
Q ss_pred EEEEEeCCCc--EEEEECCCCeeeeEEecCCCeeEEEEecCCCEEEEEEcC---CeEEEEECCCCeEEEEEcCCCCCEEE
Q 003236 655 LLCSCDNNSE--IRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIE---NYISILDVETQVCRLKLQGHKNQVHS 729 (837)
Q Consensus 655 llasgs~Dg~--I~vwDl~t~~~i~~~~~~~~i~sl~~sp~g~~llags~d---g~I~iwDl~s~~~~~~l~~h~~~V~s 729 (837)
++++.+.++. |++||+.+++...............|+|+++.|+..+.. ..|+++|+.+++..... .+......
T Consensus 276 La~~~~~~g~~~Iy~~dl~tg~~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt-~~g~~~~~ 354 (448)
T PRK04792 276 LALVLSKDGQPEIYVVDIATKALTRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRLT-FEGEQNLG 354 (448)
T ss_pred EEEEEeCCCCeEEEEEECCCCCeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEEe-cCCCCCcC
Confidence 8888777775 888899887765544444456778999999988876642 35777888877644322 12233445
Q ss_pred EEEcCCCCEEEEEe--CC--eEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCC---eEEEEECCCCcE
Q 003236 730 VCWNTSGEYLASVS--DE--LVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYE---TLELWNMTENKT 802 (837)
Q Consensus 730 l~~spdg~~Lasgs--Dg--~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fspdg~~L~sgs~dg---~I~IwDl~s~~~ 802 (837)
.+|+|||++|+..+ ++ .|.++|+.++.. ..+... .......|+|+|+.|+..+.++ .|++++......
T Consensus 355 ~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~----~~lt~~-~~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~~G~~~ 429 (448)
T PRK04792 355 GSITPDGRSMIMVNRTNGKFNIARQDLETGAM----QVLTST-RLDESPSVAPNGTMVIYSTTYQGKQVLAAVSIDGRFK 429 (448)
T ss_pred eeECCCCCEEEEEEecCCceEEEEEECCCCCe----EEccCC-CCCCCceECCCCCEEEEEEecCCceEEEEEECCCCce
Confidence 79999999988876 34 566677776632 112211 1223458999999988876654 488888865555
Q ss_pred EEeccCCCCeeEEEEeC
Q 003236 803 LTLSAHDKLVSSLAAST 819 (837)
Q Consensus 803 ~~l~~h~~~V~sla~sp 819 (837)
..+..+.+.+...+|+|
T Consensus 430 ~~l~~~~g~~~~p~Wsp 446 (448)
T PRK04792 430 ARLPAGQGEVKSPAWSP 446 (448)
T ss_pred EECcCCCCCcCCCccCC
Confidence 56666667788888887
|
|
| >KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.46 E-value=8.6e-12 Score=147.16 Aligned_cols=251 Identities=17% Similarity=0.230 Sum_probs=173.0
Q ss_pred EeCCCCeEEEEeccCCCCeEEEEEcCCC-CEEEEEeCCCeEEEEEcCCCCc------eeEEeeccccceEEEEEcCCCCe
Q 003236 582 WCTESFTVKSTLEEHTQWITDVRFSPSL-SRLATSSADRTVRVWDTENPDY------SLRTFTGHSTTVMSLDFHPSKED 654 (837)
Q Consensus 582 Wd~~t~~~~~~l~~h~~~I~~l~fspdg-~~Latgs~Dg~I~IWDl~~~~~------~~~~~~~h~~~V~sl~fspdg~~ 654 (837)
|+. .|..+..+..|...|..++.+++. .+++|||.||+|++||...-.. ...++......+.++...+.++.
T Consensus 1034 W~p-~G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~ 1112 (1431)
T KOG1240|consen 1034 WNP-RGILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQ 1112 (1431)
T ss_pred CCc-cceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCe
Confidence 553 468888899999999999998764 9999999999999999864221 12344445678999999988775
Q ss_pred EEEEEeCCCcEEEEECCCCe-------eeeEEec--CCCee-EEEEecC-CC-EEEEEEcCCeEEEEECCCCeEEEEEcC
Q 003236 655 LLCSCDNNSEIRYWSINNGS-------CAGVFKC--QSGAT-QMRFQPR-LG-RILAAAIENYISILDVETQVCRLKLQG 722 (837)
Q Consensus 655 llasgs~Dg~I~vwDl~t~~-------~i~~~~~--~~~i~-sl~~sp~-g~-~llags~dg~I~iwDl~s~~~~~~l~~ 722 (837)
++ .++.||.|.+.++.... +.+.... .+.+. .-+|... .. .++.+..-+.|..||++......+++.
T Consensus 1113 ~A-v~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~ 1191 (1431)
T KOG1240|consen 1113 FA-VSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKN 1191 (1431)
T ss_pred EE-EEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhc
Confidence 55 55889999999987521 1111111 22233 2333322 23 577777789999999998765554442
Q ss_pred --CCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEe-ecCCCceEEEEEeCCCC---EEEEEE--cCCeEE
Q 003236 723 --HKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHEL-SCTGNKFHSCVFHPTFP---SLLVIG--CYETLE 793 (837)
Q Consensus 723 --h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~-~~~~~~I~sv~fspdg~---~L~sgs--~dg~I~ 793 (837)
..+.|++++.+|.+.++++|+ .|.+.+||++-+ ..+... ..+..++..+..+|-.+ .+++++ ..+.|.
T Consensus 1192 ~~~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~---~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs 1268 (1431)
T KOG1240|consen 1192 QLRHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFR---VPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVS 1268 (1431)
T ss_pred CccccceeEEEecCCceEEEEecCCceEEEEEeecC---ceeecccCcccCCcceEEeeccCCCCceEEEecccCCCcee
Confidence 457899999999999999999 899999999876 333332 23346677776666443 444444 456899
Q ss_pred EEECCCCcEEE-eccC-------------------CCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 003236 794 LWNMTENKTLT-LSAH-------------------DKLVSSLAASTVNGMVASASHDKCVKIWK 837 (837)
Q Consensus 794 IwDl~s~~~~~-l~~h-------------------~~~V~sla~spdg~~LaSgs~DG~I~IWd 837 (837)
+|++.++.... +... .-....+++...+.++.+|+.|..|+.||
T Consensus 1269 ~wn~~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD 1332 (1431)
T KOG1240|consen 1269 TWNMETGLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWD 1332 (1431)
T ss_pred eeecccCcceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeecc
Confidence 99998885431 1111 11122334444567899999999999998
|
|
| >KOG2139 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.45 E-value=8.6e-12 Score=130.62 Aligned_cols=228 Identities=16% Similarity=0.202 Sum_probs=161.4
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeEEeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCC----
Q 003236 598 QWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNG---- 673 (837)
Q Consensus 598 ~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~---- 673 (837)
-.+..++|++.-..++++..|-.|++||-.. ..+..........|+|++|-|.+...++.+.. +.|.+|.....
T Consensus 99 ~dlr~~aWhqH~~~fava~nddvVriy~kss-t~pt~Lks~sQrnvtclawRPlsaselavgCr-~gIciW~~s~tln~~ 176 (445)
T KOG2139|consen 99 IDLRGVAWHQHIIAFAVATNDDVVRIYDKSS-TCPTKLKSVSQRNVTCLAWRPLSASELAVGCR-AGICIWSDSRTLNAN 176 (445)
T ss_pred cceeeEeechhhhhhhhhccCcEEEEeccCC-CCCceecchhhcceeEEEeccCCcceeeeeec-ceeEEEEcCcccccc
Confidence 3477889998777789999999999999886 32222223345789999999988777777774 55999976421
Q ss_pred e--------eeeEEe--cCCCeeEEEEecCCCEEEEEEc-CCeEEEEECCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEE
Q 003236 674 S--------CAGVFK--CQSGATQMRFQPRLGRILAAAI-ENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASV 742 (837)
Q Consensus 674 ~--------~i~~~~--~~~~i~sl~~sp~g~~llags~-dg~I~iwDl~s~~~~~~l~~h~~~V~sl~~spdg~~Lasg 742 (837)
. +...+. .+..|+++.|.+||..+++++. +..|.|||..++..+.......+.++-+.|+||+.+|+++
T Consensus 177 r~~~~~s~~~~qvl~~pgh~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~lfaA 256 (445)
T KOG2139|consen 177 RNIRMMSTHHLQVLQDPGHNPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVLFAA 256 (445)
T ss_pred cccccccccchhheeCCCCceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcCCCCEEEEe
Confidence 1 112222 2456999999999999998886 5789999999987765554456788999999999999999
Q ss_pred e-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEEC--CCC----------cEE------
Q 003236 743 S-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNM--TEN----------KTL------ 803 (837)
Q Consensus 743 s-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fspdg~~L~sgs~dg~I~IwDl--~s~----------~~~------ 803 (837)
. |+..++|.....- .+. ......+.|...+|+|+|++|+.+.... -++|.+ ... +.+
T Consensus 257 t~davfrlw~e~q~w--t~e-rw~lgsgrvqtacWspcGsfLLf~~sgs-p~lysl~f~~~~~~~~~~~~~k~~lliaDL 332 (445)
T KOG2139|consen 257 TCDAVFRLWQENQSW--TKE-RWILGSGRVQTACWSPCGSFLLFACSGS-PRLYSLTFDGEDSVFLRPQSIKRVLLIADL 332 (445)
T ss_pred cccceeeeehhcccc--eec-ceeccCCceeeeeecCCCCEEEEEEcCC-ceEEEEeecCCCccccCcccceeeeeeccc
Confidence 8 9999999654321 122 2222345899999999999877665543 223332 111 011
Q ss_pred ---Eecc----CCCCeeEEEEeCCCCEEEEEECCC
Q 003236 804 ---TLSA----HDKLVSSLAASTVNGMVASASHDK 831 (837)
Q Consensus 804 ---~l~~----h~~~V~sla~spdg~~LaSgs~DG 831 (837)
+... ..+++.+++|.|.|.+||+.-..+
T Consensus 333 ~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~ 367 (445)
T KOG2139|consen 333 QEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQ 367 (445)
T ss_pred hhhhhhcCcccccCccceeeECCCCCEEEEEEcCC
Confidence 1111 146788999999999999876543
|
|
| >KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown] | Back alignment and domain information |
|---|
Probab=99.44 E-value=5.6e-12 Score=131.37 Aligned_cols=252 Identities=17% Similarity=0.271 Sum_probs=192.5
Q ss_pred eeeeEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEe-CCCCeEEEEe-ccCCCCeEEEEEcCCCCEEEEEeCCCe
Q 003236 543 FTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWC-TESFTVKSTL-EEHTQWITDVRFSPSLSRLATSSADRT 620 (837)
Q Consensus 543 ~~~~~~~~l~~H~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd-~~t~~~~~~l-~~h~~~I~~l~fspdg~~Latgs~Dg~ 620 (837)
+.+..+..++||.+.|+....-|...-+++.+.|.+++||- .+.++.-..+ .....+++++.+.++...|++|-..|+
T Consensus 12 ~kp~ll~~~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~~~L~vg~~ngt 91 (404)
T KOG1409|consen 12 KKPELLSKIEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSESRRLYVGQDNGT 91 (404)
T ss_pred cchhhhhhhcCchhhhhhheeccCCCCeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeeccceEEEEEEecce
Confidence 34445677889999999999999888899999999999994 3444444333 234578999999999999999999999
Q ss_pred EEEEEcCCCC---ceeEEeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeeEEecCCCeeEEEEecCCCEE
Q 003236 621 VRVWDTENPD---YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRI 697 (837)
Q Consensus 621 I~IWDl~~~~---~~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~~~~i~sl~~sp~g~~l 697 (837)
+.-+.+...- ...+.+..|...|..+.|+-..+ .+++++.|..+.---.+.+..+..+......+++.+.-. +.
T Consensus 92 vtefs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e-~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~~~t~~~~d~~--~~ 168 (404)
T KOG1409|consen 92 VTEFALSEDFNKMTFLKDYLAHQARVSAIVFSLTHE-WVLSTGKDKQFAWHCTESGNRLGGYNFETPASALQFDAL--YA 168 (404)
T ss_pred EEEEEhhhhhhhcchhhhhhhhhcceeeEEecCCce-eEEEeccccceEEEeeccCCcccceEeeccCCCCceeeE--EE
Confidence 9999876422 23567778999999999997755 555777787665545555555544443333333333222 55
Q ss_pred EEEEcCCeEEEEECC--CCeEEEEEcCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEE
Q 003236 698 LAAAIENYISILDVE--TQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSC 774 (837)
Q Consensus 698 lags~dg~I~iwDl~--s~~~~~~l~~h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv 774 (837)
++|...|.|.+..+. .-..+.++.+|.+.+++++|.+...+|++|. |..|.+||+.... ....++.+|...|..+
T Consensus 169 fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~--g~~~el~gh~~kV~~l 246 (404)
T KOG1409|consen 169 FVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRK--GTAYELQGHNDKVQAL 246 (404)
T ss_pred EecccccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCc--ceeeeeccchhhhhhh
Confidence 666667777666544 4477889999999999999999999999998 9999999997653 4667778889999999
Q ss_pred EEeCCCCEEEEEEcCCeEEEEECCC
Q 003236 775 VFHPTFPSLLVIGCYETLELWNMTE 799 (837)
Q Consensus 775 ~fspdg~~L~sgs~dg~I~IwDl~s 799 (837)
...+--+.+++++.||.|.+||++.
T Consensus 247 ~~~~~t~~l~S~~edg~i~~w~mn~ 271 (404)
T KOG1409|consen 247 SYAQHTRQLISCGEDGGIVVWNMNV 271 (404)
T ss_pred hhhhhheeeeeccCCCeEEEEeccc
Confidence 9888888999999999999999853
|
|
| >COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.43 E-value=9.5e-11 Score=127.81 Aligned_cols=272 Identities=16% Similarity=0.224 Sum_probs=194.0
Q ss_pred CeEEEEEcCCCCEEEEEECCC---------------cEEEEeCCCCeEEEEeccCCCC--eE-EEEEcCCCCEEEEEeCC
Q 003236 557 KVESCHFSPDGKLLATGGHDK---------------KAVLWCTESFTVKSTLEEHTQW--IT-DVRFSPSLSRLATSSAD 618 (837)
Q Consensus 557 ~V~sl~fSpdg~~Lasgs~Dg---------------~I~VWd~~t~~~~~~l~~h~~~--I~-~l~fspdg~~Latgs~D 618 (837)
.|..+.|||.++||++-+... .+.|||+.++..+..+..-..+ .+ -+.|+.+.+++|-. ..
T Consensus 73 ~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARv-v~ 151 (561)
T COG5354 73 DVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARV-VG 151 (561)
T ss_pred CceecccCcccceeeeeccCCccChhhccCCccccCceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhh-cc
Confidence 489999999999999976533 4999999999999998776665 55 68899888877655 34
Q ss_pred CeEEEEEcCCCCceeEEeecc-ccceEEEEEcCCCCe-EEEE-----EeCCCcEEEEECCCCeeeeEEec-CCCeeEEEE
Q 003236 619 RTVRVWDTENPDYSLRTFTGH-STTVMSLDFHPSKED-LLCS-----CDNNSEIRYWSINNGSCAGVFKC-QSGATQMRF 690 (837)
Q Consensus 619 g~I~IWDl~~~~~~~~~~~~h-~~~V~sl~fspdg~~-llas-----gs~Dg~I~vwDl~t~~~i~~~~~-~~~i~sl~~ 690 (837)
..++|+++ ++......+... ...|....|+|.++. .||. .+..+.+++|.+..+..+..... ...-..+.|
T Consensus 152 ~sl~i~e~-t~n~~~~p~~~lr~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW 230 (561)
T COG5354 152 SSLYIHEI-TDNIEEHPFKNLRPVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKW 230 (561)
T ss_pred CeEEEEec-CCccccCchhhccccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEEE
Confidence 57999997 333222222211 256888889987432 2222 35678999999987766655443 234456888
Q ss_pred ecCCCEEEEEEc-----------CCeEEEEECCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEe---CCeEEEEEcCCCC
Q 003236 691 QPRLGRILAAAI-----------ENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS---DELVRVWSIGSGS 756 (837)
Q Consensus 691 sp~g~~llags~-----------dg~I~iwDl~s~~~~~~l~~h~~~V~sl~~spdg~~Lasgs---Dg~I~IwDl~s~~ 756 (837)
.+.|+++++-.. +..++|+++....+.... +..++|...+|.|.++.+++++ +-.+.++|++..
T Consensus 231 ~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~i~V~~-~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N- 308 (561)
T COG5354 231 QVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITERSIPVEK-DLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN- 308 (561)
T ss_pred ecCCceEEEEEEEeeecccceeccceEEEEeecccccceec-cccccceeeeecccCCceeEEecccccceeecccccc-
Confidence 888888765432 356888988855444333 5688999999999988777765 779999999875
Q ss_pred CceeEEEeecCCCceEEEEEeCCCCEEEEEEcCC---eEEEEECCCCcEEEeccCCCCeeEEEEeCCCCEEEEEE-----
Q 003236 757 KGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYE---TLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASAS----- 828 (837)
Q Consensus 757 ~~~~i~~~~~~~~~I~sv~fspdg~~L~sgs~dg---~I~IwDl~s~~~~~l~~h~~~V~sla~spdg~~LaSgs----- 828 (837)
.. +......-..+.|+|.++++++++.++ .|.+||..+...+.-.-......-+.|+||+.++.+..
T Consensus 309 ---l~--~~~Pe~~rNT~~fsp~~r~il~agF~nl~gni~i~~~~~rf~~~~~~~~~n~s~~~wspd~qF~~~~~ts~k~ 383 (561)
T COG5354 309 ---LR--FYFPEQKRNTIFFSPHERYILFAGFDNLQGNIEIFDPAGRFKVAGAFNGLNTSYCDWSPDGQFYDTDTTSEKL 383 (561)
T ss_pred ---eE--EecCCcccccccccCcccEEEEecCCccccceEEeccCCceEEEEEeecCCceEeeccCCceEEEecCCCccc
Confidence 22 223345556789999999999988875 89999988776653222223445578999999888764
Q ss_pred -CCCcEEEeC
Q 003236 829 -HDKCVKIWK 837 (837)
Q Consensus 829 -~DG~I~IWd 837 (837)
.|..|+|||
T Consensus 384 ~~Dn~i~l~~ 393 (561)
T COG5354 384 RVDNSIKLWD 393 (561)
T ss_pred ccCcceEEEE
Confidence 378899996
|
|
| >KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.42 E-value=2.9e-12 Score=129.21 Aligned_cols=264 Identities=15% Similarity=0.211 Sum_probs=179.7
Q ss_pred CeEEcccCCCceEEeecCCCCCCCCccccccccCCCeeeeEEEEec-CCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCC
Q 003236 507 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIP-ASTSKVESCHFSPDGKLLATGGHDKKAVLWCTE 585 (837)
Q Consensus 507 ~~v~~Gs~D~~v~~w~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~-~H~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~ 585 (837)
..+.+|...+.|.+|...... ....++ .|...|+.+...|+ ..|.+-++|+.+.+|++.
T Consensus 26 ~rL~sg~~~G~V~~w~lqt~r-------------------~~~~~r~~g~~~it~lq~~p~-d~l~tqgRd~~L~lw~ia 85 (323)
T KOG0322|consen 26 ERLMSGLSVGIVKMWVLQTER-------------------DLPLIRLFGRLFITNLQSIPN-DSLDTQGRDPLLILWTIA 85 (323)
T ss_pred hhhhcccccceEEEEEeecCc-------------------cchhhhhhccceeeceeecCC-cchhhcCCCceEEEEEcc
Confidence 346778888999999665442 223445 56777999988887 467888899999999988
Q ss_pred CCeEEEEeccCCCCeEEEEEcCC-----CC----EEEEEeCCC-eEEEEEcCCCCceeEE----eeccccceEEEEEcCC
Q 003236 586 SFTVKSTLEEHTQWITDVRFSPS-----LS----RLATSSADR-TVRVWDTENPDYSLRT----FTGHSTTVMSLDFHPS 651 (837)
Q Consensus 586 t~~~~~~l~~h~~~I~~l~fspd-----g~----~Latgs~Dg-~I~IWDl~~~~~~~~~----~~~h~~~V~sl~fspd 651 (837)
....+.. |.-.++++.|++- ++ .++.-+... .+.+-|..... .+.. -.+..+.++|..+..+
T Consensus 86 ~s~~i~i---~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~t-qv~i~dd~~~~Klgsvmc~~~~~~ 161 (323)
T KOG0322|consen 86 YSAFISI---HSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTT-QVQIADDSERSKLGSVMCQDKDHA 161 (323)
T ss_pred CcceEEE---eeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccc-eeEccCchhccccCceeeeecccc
Confidence 7554432 3344455555431 11 122211111 01222221111 1111 1123466777775432
Q ss_pred --CCeEEEEEeCCCcEEEEECCCCeeeeEEe-----------cCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCC--e-
Q 003236 652 --KEDLLCSCDNNSEIRYWSINNGSCAGVFK-----------CQSGATQMRFQPRLGRILAAAIENYISILDVETQ--V- 715 (837)
Q Consensus 652 --g~~llasgs~Dg~I~vwDl~t~~~i~~~~-----------~~~~i~sl~~sp~g~~llags~dg~I~iwDl~s~--~- 715 (837)
...++++|.++|.|.+||+.++..+..+. +..++.++.|.+.-..=+.++.+..+..|.+... .
T Consensus 162 c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~gsl 241 (323)
T KOG0322|consen 162 CGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTGSL 241 (323)
T ss_pred ccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccceeeeeccccCcc
Confidence 24466778899999999999974433322 3567888888876666677777888888887643 1
Q ss_pred -EEEEEcCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEE
Q 003236 716 -CRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLE 793 (837)
Q Consensus 716 -~~~~l~~h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fspdg~~L~sgs~dg~I~ 793 (837)
...++.-..-.|..+.+-||++.+|+++ |+.||||+.++. ..+..+.-|...|.+++|+|+...+++++.|..|.
T Consensus 242 q~~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl---~pLAVLkyHsagvn~vAfspd~~lmAaaskD~rIS 318 (323)
T KOG0322|consen 242 QIRKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTL---NPLAVLKYHSAGVNAVAFSPDCELMAAASKDARIS 318 (323)
T ss_pred cccceEEecCCCccceEEccCCcEEeecccCCcEEEEEeccC---CchhhhhhhhcceeEEEeCCCCchhhhccCCceEE
Confidence 1222222345688899999999999999 999999999998 67888888999999999999999999999999999
Q ss_pred EEEC
Q 003236 794 LWNM 797 (837)
Q Consensus 794 IwDl 797 (837)
+|++
T Consensus 319 LWkL 322 (323)
T KOG0322|consen 319 LWKL 322 (323)
T ss_pred eeec
Confidence 9986
|
|
| >KOG2321 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.42 E-value=1.5e-11 Score=135.22 Aligned_cols=237 Identities=15% Similarity=0.187 Sum_probs=171.7
Q ss_pred cCCCCeEEEEEcCCCCEE-EEEeCCCeEEEEEcCCCCceeEEeeccccceEEEE-EcCCCCeEEEEEeCCCcEEEEECCC
Q 003236 595 EHTQWITDVRFSPSLSRL-ATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLD-FHPSKEDLLCSCDNNSEIRYWSINN 672 (837)
Q Consensus 595 ~h~~~I~~l~fspdg~~L-atgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~sl~-fspdg~~llasgs~Dg~I~vwDl~t 672 (837)
.|....+.|..+|||.|+ +||.+.-.|+|||+..-. ++.-......|..+. ++.|-..++ .-..|.+|-+..-
T Consensus 49 e~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLS--LKFERhlDae~V~feiLsDD~SK~v-~L~~DR~IefHak-- 123 (703)
T KOG2321|consen 49 EMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLS--LKFERHLDAEVVDFEILSDDYSKSV-FLQNDRTIEFHAK-- 123 (703)
T ss_pred CCccccceeEecCCCcEEEEecccCCceEEEEcccce--eeeeecccccceeEEEeccchhhhe-EeecCceeeehhh--
Confidence 477888999999999985 567778899999998633 333332233444433 333322222 3334666655432
Q ss_pred CeeeeEEecCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEE
Q 003236 673 GSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWS 751 (837)
Q Consensus 673 ~~~i~~~~~~~~i~sl~~sp~g~~llags~dg~I~iwDl~s~~~~~~l~~h~~~V~sl~~spdg~~Lasgs-Dg~I~IwD 751 (837)
+-....+..+.....++++.-..-|++++....|+-++++.|.-+..+....+.+++|..++...+|++|+ +|.|.+||
T Consensus 124 ~G~hy~~RIP~~GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwD 203 (703)
T KOG2321|consen 124 YGRHYRTRIPKFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWD 203 (703)
T ss_pred cCeeeeeecCcCCccccccCCCccEEEeecCcceEEEEccccccccccccccccceeeeecCccceEEecccCceEEEec
Confidence 22233334445556677776666788888889999999999999988888889999999999999999999 99999999
Q ss_pred cCCCCCceeEEE---eecCC-----CceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEEEeccCC--CCeeEEEEeCC-
Q 003236 752 IGSGSKGECIHE---LSCTG-----NKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSAHD--KLVSSLAASTV- 820 (837)
Q Consensus 752 l~s~~~~~~i~~---~~~~~-----~~I~sv~fspdg~~L~sgs~dg~I~IwDl~s~~~~~l~~h~--~~V~sla~spd- 820 (837)
.++......+.. +..+. ..|+++.|+.+|-.+++|+.+|.|.|||++..+++....|. -+|..+.|.+.
T Consensus 204 pR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~~ 283 (703)
T KOG2321|consen 204 PRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKDHGYELPIKKLDWQDTD 283 (703)
T ss_pred chhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeecccCCccceeeecccccC
Confidence 998744332221 11222 34899999999999999999999999999999998777775 47888999765
Q ss_pred -CCEEEEEECCCcEEEeC
Q 003236 821 -NGMVASASHDKCVKIWK 837 (837)
Q Consensus 821 -g~~LaSgs~DG~I~IWd 837 (837)
...|+|+ +...++|||
T Consensus 284 ~q~~v~S~-Dk~~~kiWd 300 (703)
T KOG2321|consen 284 QQNKVVSM-DKRILKIWD 300 (703)
T ss_pred CCceEEec-chHHhhhcc
Confidence 3456665 456789997
|
|
| >COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.41 E-value=1.5e-09 Score=115.01 Aligned_cols=266 Identities=12% Similarity=0.102 Sum_probs=186.3
Q ss_pred CCCCCeEEEEEcCCCCEEEEEEC---CCcEEEEeCCC--CeEE--EEeccCCCCeEEEEEcCCCCEEEEEeC-CCeEEEE
Q 003236 553 ASTSKVESCHFSPDGKLLATGGH---DKKAVLWCTES--FTVK--STLEEHTQWITDVRFSPSLSRLATSSA-DRTVRVW 624 (837)
Q Consensus 553 ~H~~~V~sl~fSpdg~~Lasgs~---Dg~I~VWd~~t--~~~~--~~l~~h~~~I~~l~fspdg~~Latgs~-Dg~I~IW 624 (837)
.+.+.++-|+|+|++++|.++-. +|.|..|.++. |++. ........+-+.+++++++++|+++.. .|.|.++
T Consensus 37 ~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yvsvd~~g~~vf~AnY~~g~v~v~ 116 (346)
T COG2706 37 AELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYVSVDEDGRFVFVANYHSGSVSVY 116 (346)
T ss_pred cccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEEEECCCCCEEEEEEccCceEEEE
Confidence 45566888999999999988755 47788887764 4443 222222334488999999999999876 5799999
Q ss_pred EcCCCCcee--EEeeccccc----------eEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeeE----EecCCCeeEE
Q 003236 625 DTENPDYSL--RTFTGHSTT----------VMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGV----FKCQSGATQM 688 (837)
Q Consensus 625 Dl~~~~~~~--~~~~~h~~~----------V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~----~~~~~~i~sl 688 (837)
-+.+..... .....|.+. +.+..+.|+++++++..-.--.|.+|++..++.... +....+...|
T Consensus 117 p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi 196 (346)
T COG2706 117 PLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEVKPGAGPRHI 196 (346)
T ss_pred EcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEcccCccccccccccCCCCCcceE
Confidence 986533211 123335544 889999999886665543445799999997765432 2346678999
Q ss_pred EEecCCCEEEEEEc-CCeEEEEECCCC-eEEEEEcC---------CCCCEEEEEEcCCCCEEEEEe--CCeEEEEEcCCC
Q 003236 689 RFQPRLGRILAAAI-ENYISILDVETQ-VCRLKLQG---------HKNQVHSVCWNTSGEYLASVS--DELVRVWSIGSG 755 (837)
Q Consensus 689 ~~sp~g~~llags~-dg~I~iwDl~s~-~~~~~l~~---------h~~~V~sl~~spdg~~Lasgs--Dg~I~IwDl~s~ 755 (837)
.|+|++++.++.++ +++|.+|..+.. ..+..+.. ...+...|.+++||++|.++. .+.|.+|.+...
T Consensus 197 ~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~ 276 (346)
T COG2706 197 VFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPD 276 (346)
T ss_pred EEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcCC
Confidence 99999999888776 789999998773 22222221 234677899999999999988 558999988765
Q ss_pred CC-ceeEEEeecCCCceEEEEEeCCCCEEEEEEcCC-eEEEEEC--CCCcEEEe--ccCCCCeeEEEEe
Q 003236 756 SK-GECIHELSCTGNKFHSCVFHPTFPSLLVIGCYE-TLELWNM--TENKTLTL--SAHDKLVSSLAAS 818 (837)
Q Consensus 756 ~~-~~~i~~~~~~~~~I~sv~fspdg~~L~sgs~dg-~I~IwDl--~s~~~~~l--~~h~~~V~sla~s 818 (837)
.. ...+.....++..-..+.|++++++|+++..++ .|.+|.+ .+|++..+ ........||.|.
T Consensus 277 ~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d~~TG~L~~~~~~~~~p~Pvcv~f~ 345 (346)
T COG2706 277 GGKLELVGITPTEGQFPRDFNINPSGRFLIAANQKSDNITVFERDKETGRLTLLGRYAVVPEPVCVKFL 345 (346)
T ss_pred CCEEEEEEEeccCCcCCccceeCCCCCEEEEEccCCCcEEEEEEcCCCceEEecccccCCCCcEEEEEc
Confidence 32 334444455555678999999999999998876 6777754 56665422 2344455666664
|
|
| >KOG1334 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.40 E-value=2.7e-12 Score=138.77 Aligned_cols=278 Identities=15% Similarity=0.189 Sum_probs=209.7
Q ss_pred cccCCCeEEcccCCCceEEeecCCCCCCCCccccccccCCCeeeeEEEEecCCCCCeEEEEEcC--CCCEEEEEECCCcE
Q 003236 502 LTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSP--DGKLLATGGHDKKA 579 (837)
Q Consensus 502 l~~~~~~v~~Gs~D~~v~~w~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~H~~~V~sl~fSp--dg~~Lasgs~Dg~I 579 (837)
+.....++++||.|..|.+|.|.... .......+|...|.-..|-| +..-+++++.||.|
T Consensus 150 FN~~Gd~l~SgSDD~~vv~WdW~~~~------------------~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqv 211 (559)
T KOG1334|consen 150 FNQRGDVLASGSDDLQVVVWDWVSGS------------------PKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQV 211 (559)
T ss_pred ecccCceeeccCccceEEeehhhccC------------------cccccccccccchhhhhccCCCCCcCceeccccCce
Confidence 34455678899999999888665432 11333458888888888988 44579999999999
Q ss_pred EEEeCCC-CeE--EEEeccCCCCeEEEEEcCC-CCEEEEEeCCCeEEEEEcCCCCc--eeEEeecccc---ceEEEEEcC
Q 003236 580 VLWCTES-FTV--KSTLEEHTQWITDVRFSPS-LSRLATSSADRTVRVWDTENPDY--SLRTFTGHST---TVMSLDFHP 650 (837)
Q Consensus 580 ~VWd~~t-~~~--~~~l~~h~~~I~~l~fspd-g~~Latgs~Dg~I~IWDl~~~~~--~~~~~~~h~~---~V~sl~fsp 650 (837)
++=.+.. +.+ ...+..|.+.|..++..|+ ...|.+++.|+.+.-+|+..... .+.....+.. ...+|+.+|
T Consensus 212 r~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P 291 (559)
T KOG1334|consen 212 RVSEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDP 291 (559)
T ss_pred eeeeeccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCC
Confidence 9886643 332 3556779999999999996 45689999999999999886542 1222233333 578899999
Q ss_pred CCCeEEEEEeCCCcEEEEECCCCeee------eEE-------ecCCCeeEEEEecCCCEEEEEEcCCeEEEEECCC--C-
Q 003236 651 SKEDLLCSCDNNSEIRYWSINNGSCA------GVF-------KCQSGATQMRFQPRLGRILAAAIENYISILDVET--Q- 714 (837)
Q Consensus 651 dg~~llasgs~Dg~I~vwDl~t~~~i------~~~-------~~~~~i~sl~~sp~g~~llags~dg~I~iwDl~s--~- 714 (837)
...+.+++++.|-.+++||.+.-... ..+ .....|++++|+.++..++++..|-.|++|.-.- +
T Consensus 292 ~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~ 371 (559)
T KOG1334|consen 292 RNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDGS 371 (559)
T ss_pred CCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEeccccccCC
Confidence 99999999999999999998753211 222 1234699999999999999999999999995432 2
Q ss_pred ---------eEEE-EEcCCCC--CEEEEEE-cCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCC
Q 003236 715 ---------VCRL-KLQGHKN--QVHSVCW-NTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTF 780 (837)
Q Consensus 715 ---------~~~~-~l~~h~~--~V~sl~~-spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fspdg 780 (837)
..+. .+++|.+ .|.++-| -|..+|+++|+ -|.|.||+-.++ +.+..+.+....|.|+.-+|--
T Consensus 372 ~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~---eii~~MegDr~VVNCLEpHP~~ 448 (559)
T KOG1334|consen 372 EPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTG---EIIRFMEGDRHVVNCLEPHPHL 448 (559)
T ss_pred CCCCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecchh---HHHHHhhcccceEeccCCCCCC
Confidence 1222 3778865 4667755 57889999999 569999998887 6666677777789999999999
Q ss_pred CEEEEEEcCCeEEEEECCCC
Q 003236 781 PSLLVIGCYETLELWNMTEN 800 (837)
Q Consensus 781 ~~L~sgs~dg~I~IwDl~s~ 800 (837)
+.|++++-|..|+||-..+.
T Consensus 449 PvLAsSGid~DVKIWTP~~~ 468 (559)
T KOG1334|consen 449 PVLASSGIDHDVKIWTPLTA 468 (559)
T ss_pred chhhccCCccceeeecCCcc
Confidence 99999999999999987443
|
|
| >TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain | Back alignment and domain information |
|---|
Probab=99.40 E-value=9.8e-10 Score=120.57 Aligned_cols=256 Identities=11% Similarity=0.061 Sum_probs=169.7
Q ss_pred CcEEEEeCCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeC----------CCeEEEEEcCCCCceeEEeecc-------
Q 003236 577 KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA----------DRTVRVWDTENPDYSLRTFTGH------- 639 (837)
Q Consensus 577 g~I~VWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~----------Dg~I~IWDl~~~~~~~~~~~~h------- 639 (837)
++|.|.|..+++.+..+..-..+- .+ ++||++.|+++.. +..|.+||+.+.+. +..+.-.
T Consensus 27 ~~v~ViD~~~~~v~g~i~~G~~P~-~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~-~~~i~~p~~p~~~~ 103 (352)
T TIGR02658 27 TQVYTIDGEAGRVLGMTDGGFLPN-PV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLP-IADIELPEGPRFLV 103 (352)
T ss_pred ceEEEEECCCCEEEEEEEccCCCc-ee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcE-EeEEccCCCchhhc
Confidence 899999999999998886544333 34 9999999888766 78999999999775 3333321
Q ss_pred ccceEEEEEcCCCCeEEEEEeC-CCcEEEEECCCCeeeeEEecCCCeeEEEEecCCCEEEEEEcCCeEEEEECCC-Ce-E
Q 003236 640 STTVMSLDFHPSKEDLLCSCDN-NSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVET-QV-C 716 (837)
Q Consensus 640 ~~~V~sl~fspdg~~llasgs~-Dg~I~vwDl~t~~~i~~~~~~~~i~sl~~sp~g~~llags~dg~I~iwDl~s-~~-~ 716 (837)
......++++|||+.++++--. +..|.++|+.+++.+..+....+..-...+.+. +.+-|.||......+.+ ++ .
T Consensus 104 ~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~~~~vy~t~e~~--~~~~~~Dg~~~~v~~d~~g~~~ 181 (352)
T TIGR02658 104 GTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPDCYHIFPTANDT--FFMHCRDGSLAKVGYGTKGNPK 181 (352)
T ss_pred cCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCCCcEEEEecCCc--cEEEeecCceEEEEecCCCceE
Confidence 2234478999999988766644 899999999999999988875543333333222 22333444444433322 11 1
Q ss_pred EEE---EcCCCCCEE-EEEEcC-CCCEEEEEeCCeEEEEEcCCCCCc--eeEEEeec-------CCCceEEEEEeCCCCE
Q 003236 717 RLK---LQGHKNQVH-SVCWNT-SGEYLASVSDELVRVWSIGSGSKG--ECIHELSC-------TGNKFHSCVFHPTFPS 782 (837)
Q Consensus 717 ~~~---l~~h~~~V~-sl~~sp-dg~~LasgsDg~I~IwDl~s~~~~--~~i~~~~~-------~~~~I~sv~fspdg~~ 782 (837)
... +.....++. .-.|.+ +|.++++..+|.|.+.|+...... ..+..+.. ....+.-++++++++.
T Consensus 182 ~~~~~vf~~~~~~v~~rP~~~~~dg~~~~vs~eG~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~ 261 (352)
T TIGR02658 182 IKPTEVFHPEDEYLINHPAYSNKSGRLVWPTYTGKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDR 261 (352)
T ss_pred EeeeeeecCCccccccCCceEcCCCcEEEEecCCeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCE
Confidence 111 111001110 013455 888888888999999997553211 12222111 1233445999999999
Q ss_pred EEEEE----------cCCeEEEEECCCCcEEEeccCCCCeeEEEEeCCCC-EEEEEE-CCCcEEEeC
Q 003236 783 LLVIG----------CYETLELWNMTENKTLTLSAHDKLVSSLAASTVNG-MVASAS-HDKCVKIWK 837 (837)
Q Consensus 783 L~sgs----------~dg~I~IwDl~s~~~~~l~~h~~~V~sla~spdg~-~LaSgs-~DG~I~IWd 837 (837)
+++.. ..+.|.++|..+++.+....-...+..+++++|++ +|++.+ .++.|.|.|
T Consensus 262 lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~vG~~~~~iavS~Dgkp~lyvtn~~s~~VsViD 328 (352)
T TIGR02658 262 IYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIELGHEIDSINVSQDAKPLLYALSTGDKTLYIFD 328 (352)
T ss_pred EEEEecCCccccccCCCCEEEEEECCCCeEEEEEeCCCceeeEEECCCCCeEEEEeCCCCCcEEEEE
Confidence 99853 12489999999999996655667899999999999 887666 578788875
|
This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome. |
| >PRK00178 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.39 E-value=8.1e-11 Score=135.15 Aligned_cols=222 Identities=17% Similarity=0.169 Sum_probs=151.5
Q ss_pred EEecCCCCCeEEEEEcCCCCEEEEEECC---CcEEEEeCCCCeEEEEeccCCCCeEEEEEcCCCCEEEE-EeCCC--eEE
Q 003236 549 QLIPASTSKVESCHFSPDGKLLATGGHD---KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLAT-SSADR--TVR 622 (837)
Q Consensus 549 ~~l~~H~~~V~sl~fSpdg~~Lasgs~D---g~I~VWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Lat-gs~Dg--~I~ 622 (837)
+.+..|...+.+.+|+|||+.|+..+.+ ..|++||+.+++... +....+.+...+|+|||+.|+. .+.+| .|+
T Consensus 192 ~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~-l~~~~g~~~~~~~SpDG~~la~~~~~~g~~~Iy 270 (430)
T PRK00178 192 VTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ-ITNFEGLNGAPAWSPDGSKLAFVLSKDGNPEIY 270 (430)
T ss_pred eEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE-ccCCCCCcCCeEECCCCCEEEEEEccCCCceEE
Confidence 4455677789999999999999877644 368999998876543 3334455667999999998874 44454 688
Q ss_pred EEEcCCCCceeEEeeccccceEEEEEcCCCCeEEEEEeCCC--cEEEEECCCCeeeeEEecCCCeeEEEEecCCCEEEEE
Q 003236 623 VWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNS--EIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAA 700 (837)
Q Consensus 623 IWDl~~~~~~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg--~I~vwDl~t~~~i~~~~~~~~i~sl~~sp~g~~llag 700 (837)
+||+.++. ...+..+........|+|++..++++...++ .|+++|+.+++...............|+|+++.++..
T Consensus 271 ~~d~~~~~--~~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt~~~~~~~~~~~Spdg~~i~~~ 348 (430)
T PRK00178 271 VMDLASRQ--LSRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERVTFVGNYNARPRLSADGKTLVMV 348 (430)
T ss_pred EEECCCCC--eEEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecCCCCccceEECCCCCEEEEE
Confidence 88998765 3445556666777899999998887765554 5778888877754433222334457899999999887
Q ss_pred EcCC---eEEEEECCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEe--CC--eEEEEEcCCCCCceeEEEeecCCCceEE
Q 003236 701 AIEN---YISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS--DE--LVRVWSIGSGSKGECIHELSCTGNKFHS 773 (837)
Q Consensus 701 s~dg---~I~iwDl~s~~~~~~l~~h~~~V~sl~~spdg~~Lasgs--Dg--~I~IwDl~s~~~~~~i~~~~~~~~~I~s 773 (837)
..++ .|.+||+.++.... +. +........|+|||+.|+..+ ++ .|.++++... ....+....+.+..
T Consensus 349 ~~~~~~~~l~~~dl~tg~~~~-lt-~~~~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~g~----~~~~l~~~~g~~~~ 422 (430)
T PRK00178 349 HRQDGNFHVAAQDLQRGSVRI-LT-DTSLDESPSVAPNGTMLIYATRQQGRGVLMLVSINGR----VRLPLPTAQGEVRE 422 (430)
T ss_pred EccCCceEEEEEECCCCCEEE-cc-CCCCCCCceECCCCCEEEEEEecCCceEEEEEECCCC----ceEECcCCCCCcCC
Confidence 7542 58899998875433 22 222233568999999988776 33 5777777533 22233334455666
Q ss_pred EEEeCC
Q 003236 774 CVFHPT 779 (837)
Q Consensus 774 v~fspd 779 (837)
.+|+|-
T Consensus 423 p~ws~~ 428 (430)
T PRK00178 423 PSWSPY 428 (430)
T ss_pred CccCCC
Confidence 677663
|
|
| >KOG4594 consensus Sequence-specific single-stranded-DNA-binding protein [Replication, recombination and repair; Transcription; General function prediction only] | Back alignment and domain information |
|---|
Probab=99.39 E-value=2.3e-13 Score=137.34 Aligned_cols=77 Identities=32% Similarity=0.750 Sum_probs=63.8
Q ss_pred CcchHHHHHHHHHHHHHhcCChHHHHHHHHHhcCCCCCCcccCCCCCcchhHHHHHHHHHHhhccc----cccchhhhhh
Q 003236 4 NNWEADKMLDVYIYDYLLKRKLHASAKAFQTEGKVSTDPVAIDAPGGFLFEWWSVFWDIFIARTNE----KHSESAASYI 79 (837)
Q Consensus 4 ~~~~~~~~l~~yiydyl~k~~~~~~A~~~~~e~~~~~~~~~~~~~~~fL~eww~~fwd~f~a~~~~----~~s~~~~~y~ 79 (837)
++-.|+++|..||||||++-|..++|+.|+.|..+..+ +.+-.+-+||.+|||||||+|+|...+ .||..+..+.
T Consensus 12 Sd~qArekLa~YvYEYLlhvgaqksaqtflseirwekn-itlge~p~FLhsWWcvFwDLYcAAPeRRd~c~HSsEAKaFh 90 (354)
T KOG4594|consen 12 SDSQAREKLALYVYEYLLHVGAQKSAQTFLSEIRWEKN-ITLGEPPGFLHSWWCVFWDLYCAAPERRDTCEHSSEAKAFH 90 (354)
T ss_pred cchhHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHhhh-hhccCCcchhhhhHHHHHHHhhcCccccCcccccHhhhhhh
Confidence 56679999999999999999999999999999887766 455667799999999999999995443 5666666655
Q ss_pred HH
Q 003236 80 ES 81 (837)
Q Consensus 80 q~ 81 (837)
++
T Consensus 91 dy 92 (354)
T KOG4594|consen 91 DY 92 (354)
T ss_pred hh
Confidence 54
|
|
| >PRK04792 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.38 E-value=7.7e-11 Score=135.67 Aligned_cols=221 Identities=18% Similarity=0.194 Sum_probs=148.0
Q ss_pred EecCCCCCeEEEEEcCCCCEEEEEECC-C--cEEEEeCCCCeEEEEeccCCCCeEEEEEcCCCCEEEE-EeCCCe--EEE
Q 003236 550 LIPASTSKVESCHFSPDGKLLATGGHD-K--KAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLAT-SSADRT--VRV 623 (837)
Q Consensus 550 ~l~~H~~~V~sl~fSpdg~~Lasgs~D-g--~I~VWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Lat-gs~Dg~--I~I 623 (837)
.+..+...+.+..|+|||+.|+..+.+ + .|++||+.+++... +....+.....+|+|||+.|+. .+.++. |++
T Consensus 212 ~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~-lt~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~ 290 (448)
T PRK04792 212 MLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREK-VTSFPGINGAPRFSPDGKKLALVLSKDGQPEIYV 290 (448)
T ss_pred EeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEE-ecCCCCCcCCeeECCCCCEEEEEEeCCCCeEEEE
Confidence 344566788999999999998877543 2 58889998876533 2223344557899999998765 455664 777
Q ss_pred EEcCCCCceeEEeeccccceEEEEEcCCCCeEEEEEeCCC--cEEEEECCCCeeeeEEecCCCeeEEEEecCCCEEEEEE
Q 003236 624 WDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNS--EIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAA 701 (837)
Q Consensus 624 WDl~~~~~~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg--~I~vwDl~t~~~i~~~~~~~~i~sl~~sp~g~~llags 701 (837)
||+.++. ...+..+...+...+|+||+..++++...++ .|+++|+.+++...............|+|++++|+..+
T Consensus 291 ~dl~tg~--~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt~~g~~~~~~~~SpDG~~l~~~~ 368 (448)
T PRK04792 291 VDIATKA--LTRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRLTFEGEQNLGGSITPDGRSMIMVN 368 (448)
T ss_pred EECCCCC--eEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEEecCCCCCcCeeECCCCCEEEEEE
Confidence 7887654 4445555566778999999998887776554 47777887776544332223344578999999988876
Q ss_pred cC-C--eEEEEECCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEe--CC--eEEEEEcCCCCCceeEEEeecCCCceEEE
Q 003236 702 IE-N--YISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS--DE--LVRVWSIGSGSKGECIHELSCTGNKFHSC 774 (837)
Q Consensus 702 ~d-g--~I~iwDl~s~~~~~~l~~h~~~V~sl~~spdg~~Lasgs--Dg--~I~IwDl~s~~~~~~i~~~~~~~~~I~sv 774 (837)
.+ + .|.++|+.++.... +... .......|+|||+.|+... ++ .|++++... .....+....+.+...
T Consensus 369 ~~~g~~~I~~~dl~~g~~~~-lt~~-~~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~~G----~~~~~l~~~~g~~~~p 442 (448)
T PRK04792 369 RTNGKFNIARQDLETGAMQV-LTST-RLDESPSVAPNGTMVIYSTTYQGKQVLAAVSIDG----RFKARLPAGQGEVKSP 442 (448)
T ss_pred ecCCceEEEEEECCCCCeEE-ccCC-CCCCCceECCCCCEEEEEEecCCceEEEEEECCC----CceEECcCCCCCcCCC
Confidence 54 3 56778888876433 2222 1223458999999888766 34 477777643 2334444445566777
Q ss_pred EEeCC
Q 003236 775 VFHPT 779 (837)
Q Consensus 775 ~fspd 779 (837)
+|+|-
T Consensus 443 ~Wsp~ 447 (448)
T PRK04792 443 AWSPF 447 (448)
T ss_pred ccCCC
Confidence 77763
|
|
| >TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB | Back alignment and domain information |
|---|
Probab=99.38 E-value=1.3e-10 Score=132.68 Aligned_cols=205 Identities=15% Similarity=0.185 Sum_probs=148.2
Q ss_pred CeEEEEEcCCCCceeEEeeccccceEEEEEcCCCCeEEEEEeCC--CcEEEEECCCCeeeeEEecCCCeeEEEEecCCCE
Q 003236 619 RTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN--SEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGR 696 (837)
Q Consensus 619 g~I~IWDl~~~~~~~~~~~~h~~~V~sl~fspdg~~llasgs~D--g~I~vwDl~t~~~i~~~~~~~~i~sl~~sp~g~~ 696 (837)
..|.++|..... .+.+..+...+.+.+|+|+++.++++...+ ..|++||+.+++..........+.+++|+|+++.
T Consensus 170 ~~l~~~d~~g~~--~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~spDg~~ 247 (417)
T TIGR02800 170 YELQVADYDGAN--PQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKVASFPGMNGAPAFSPDGSK 247 (417)
T ss_pred ceEEEEcCCCCC--CEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEeecCCCCccceEECCCCCE
Confidence 368888876433 455556677899999999999877665433 4799999998876655555566778999999998
Q ss_pred EEEEEc-C--CeEEEEECCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEe--CC--eEEEEEcCCCCCceeEEEeecCCC
Q 003236 697 ILAAAI-E--NYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS--DE--LVRVWSIGSGSKGECIHELSCTGN 769 (837)
Q Consensus 697 llags~-d--g~I~iwDl~s~~~~~~l~~h~~~V~sl~~spdg~~Lasgs--Dg--~I~IwDl~s~~~~~~i~~~~~~~~ 769 (837)
|++... + ..|++||+.++... .+..+........|+||++.|+.++ ++ .|+++|+.++. ...+..+..
T Consensus 248 l~~~~~~~~~~~i~~~d~~~~~~~-~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~----~~~l~~~~~ 322 (417)
T TIGR02800 248 LAVSLSKDGNPDIYVMDLDGKQLT-RLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGE----VRRLTFRGG 322 (417)
T ss_pred EEEEECCCCCccEEEEECCCCCEE-ECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCC----EEEeecCCC
Confidence 876543 3 36999999877543 3334555556789999999888766 33 68888887652 223333456
Q ss_pred ceEEEEEeCCCCEEEEEEcCC---eEEEEECCCCcEEEeccCCCCeeEEEEeCCCCEEEEEECCC
Q 003236 770 KFHSCVFHPTFPSLLVIGCYE---TLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDK 831 (837)
Q Consensus 770 ~I~sv~fspdg~~L~sgs~dg---~I~IwDl~s~~~~~l~~h~~~V~sla~spdg~~LaSgs~DG 831 (837)
.+..+.|+|++++|+.++.++ .|++||+.++....+... ......+|+||+++|+.++.++
T Consensus 323 ~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~~~l~~~-~~~~~p~~spdg~~l~~~~~~~ 386 (417)
T TIGR02800 323 YNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGERVLTDT-GLDESPSFAPNGRMILYATTRG 386 (417)
T ss_pred CccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCeEEccCC-CCCCCceECCCCCEEEEEEeCC
Confidence 677889999999999988876 899999988765544432 2345678999999888877654
|
The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear. |
| >PRK01029 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.38 E-value=2.3e-10 Score=130.80 Aligned_cols=238 Identities=14% Similarity=0.114 Sum_probs=158.4
Q ss_pred CcEEEEeCCCCeEEEEeccCCCCeEEEEEcCCCCE--E-EEEeCCC--eEEEEEcCCCCceeEEeeccccceEEEEEcCC
Q 003236 577 KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSR--L-ATSSADR--TVRVWDTENPDYSLRTFTGHSTTVMSLDFHPS 651 (837)
Q Consensus 577 g~I~VWd~~t~~~~~~l~~h~~~I~~l~fspdg~~--L-atgs~Dg--~I~IWDl~~~~~~~~~~~~h~~~V~sl~fspd 651 (837)
..|.+.|.+.+... .+......+.+-+|+|||+. + ++...+| .|++.++.++.. ..+....+......|+||
T Consensus 165 ~~l~~~d~dG~~~~-~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~--~~lt~~~g~~~~p~wSPD 241 (428)
T PRK01029 165 GELWSVDYDGQNLR-PLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAG--KKILALQGNQLMPTFSPR 241 (428)
T ss_pred ceEEEEcCCCCCce-EcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCc--eEeecCCCCccceEECCC
Confidence 35777787655443 34445666788999999875 2 2444443 578888887653 333334455667899999
Q ss_pred CCeEEEEEeCCC----cEEEEECCCC---eeeeEEecC-CCeeEEEEecCCCEEEEEEc-CCe--EEEEECCC-CeEEEE
Q 003236 652 KEDLLCSCDNNS----EIRYWSINNG---SCAGVFKCQ-SGATQMRFQPRLGRILAAAI-ENY--ISILDVET-QVCRLK 719 (837)
Q Consensus 652 g~~llasgs~Dg----~I~vwDl~t~---~~i~~~~~~-~~i~sl~~sp~g~~llags~-dg~--I~iwDl~s-~~~~~~ 719 (837)
|+.++++...+| .+.+|++..+ ......... ......+|+|||+.|+..+. ++. |+++++.. +.....
T Consensus 242 G~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~ 321 (428)
T PRK01029 242 KKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRL 321 (428)
T ss_pred CCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEE
Confidence 998887775433 3344677653 333333222 23467899999998887764 554 55555542 233444
Q ss_pred EcCCCCCEEEEEEcCCCCEEEEEe--C--CeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcC---CeE
Q 003236 720 LQGHKNQVHSVCWNTSGEYLASVS--D--ELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCY---ETL 792 (837)
Q Consensus 720 l~~h~~~V~sl~~spdg~~Lasgs--D--g~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fspdg~~L~sgs~d---g~I 792 (837)
+..+...+....|+|||+.|+... + ..|.+||+.++.. ..+......+....|+|||+.|+..+.+ ..|
T Consensus 322 lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~----~~Lt~~~~~~~~p~wSpDG~~L~f~~~~~g~~~L 397 (428)
T PRK01029 322 LTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRD----YQLTTSPENKESPSWAIDSLHLVYSAGNSNESEL 397 (428)
T ss_pred eccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCe----EEccCCCCCccceEECCCCCEEEEEECCCCCceE
Confidence 554556778899999999988776 2 3799999988732 2222223456778999999988876543 379
Q ss_pred EEEECCCCcEEEeccCCCCeeEEEEeCCC
Q 003236 793 ELWNMTENKTLTLSAHDKLVSSLAASTVN 821 (837)
Q Consensus 793 ~IwDl~s~~~~~l~~h~~~V~sla~spdg 821 (837)
+++|+.+++...+....+.+...+|+|-.
T Consensus 398 ~~vdl~~g~~~~Lt~~~g~~~~p~Ws~~~ 426 (428)
T PRK01029 398 YLISLITKKTRKIVIGSGEKRFPSWGAFP 426 (428)
T ss_pred EEEECCCCCEEEeecCCCcccCceecCCC
Confidence 99999998877666666677888998753
|
|
| >KOG1310 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.38 E-value=2.3e-12 Score=140.64 Aligned_cols=166 Identities=17% Similarity=0.271 Sum_probs=128.9
Q ss_pred EEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeEEeeccccceEEEEEcCC-CCeEEEEEeCCCcEEE
Q 003236 589 VKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPS-KEDLLCSCDNNSEIRY 667 (837)
Q Consensus 589 ~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~sl~fspd-g~~llasgs~Dg~I~v 667 (837)
....+.+|.+.|+|+.|+.+|.+|++||.|-.+.|||.-..+.....-.+|...|.++.|.|. ++.++++|..|..|++
T Consensus 42 lE~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~l 121 (758)
T KOG1310|consen 42 LEAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKL 121 (758)
T ss_pred hhhhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEE
Confidence 446788999999999999999999999999999999998767666677899999999999985 5678889999999999
Q ss_pred EECCCCe----------eeeEEe-cCCCeeEEEEecCC-CEEEEEEcCCeEEEEECCCCeE-EE---------EEcCCCC
Q 003236 668 WSINNGS----------CAGVFK-CQSGATQMRFQPRL-GRILAAAIENYISILDVETQVC-RL---------KLQGHKN 725 (837)
Q Consensus 668 wDl~t~~----------~i~~~~-~~~~i~sl~~sp~g-~~llags~dg~I~iwDl~s~~~-~~---------~l~~h~~ 725 (837)
+|+...+ .+..+. +...|..++..|++ ..+.++++||.|+-||++.... .. .+...--
T Consensus 122 fdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~li 201 (758)
T KOG1310|consen 122 FDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLI 201 (758)
T ss_pred EecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchhhh
Confidence 9998522 122222 23457778888888 6788999999999999987321 11 1111123
Q ss_pred CEEEEEEcCCC-CEEEEEe-CCeEEEEEcCC
Q 003236 726 QVHSVCWNTSG-EYLASVS-DELVRVWSIGS 754 (837)
Q Consensus 726 ~V~sl~~spdg-~~Lasgs-Dg~I~IwDl~s 754 (837)
...|+.++|.. .+|++|+ |-..++||.+.
T Consensus 202 elk~ltisp~rp~~laVGgsdpfarLYD~Rr 232 (758)
T KOG1310|consen 202 ELKCLTISPSRPYYLAVGGSDPFARLYDRRR 232 (758)
T ss_pred eeeeeeecCCCCceEEecCCCchhhhhhhhh
Confidence 46788999865 5677776 88999999653
|
|
| >PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins | Back alignment and domain information |
|---|
Probab=99.37 E-value=4e-11 Score=122.09 Aligned_cols=146 Identities=17% Similarity=0.342 Sum_probs=107.5
Q ss_pred eeEEEEecCCCEEEEEEc----------CCeEEEEECCC-CeEEEEEcC-CCCCEEEEEEcCCCCEEEEEe---CCeEEE
Q 003236 685 ATQMRFQPRLGRILAAAI----------ENYISILDVET-QVCRLKLQG-HKNQVHSVCWNTSGEYLASVS---DELVRV 749 (837)
Q Consensus 685 i~sl~~sp~g~~llags~----------dg~I~iwDl~s-~~~~~~l~~-h~~~V~sl~~spdg~~Lasgs---Dg~I~I 749 (837)
-..+.|++.|.+|++-.. -+...+|.++. ...+..+.- ..++|.+++|+|+|+.|++.. +..|.+
T Consensus 8 ~~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~l 87 (194)
T PF08662_consen 8 DAKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTL 87 (194)
T ss_pred eEEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEE
Confidence 345778888887766544 12344555432 223333332 345799999999999876653 669999
Q ss_pred EEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcC---CeEEEEECCCCcEEEeccCCCCeeEEEEeCCCCEEEE
Q 003236 750 WSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCY---ETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVAS 826 (837)
Q Consensus 750 wDl~s~~~~~~i~~~~~~~~~I~sv~fspdg~~L~sgs~d---g~I~IwDl~s~~~~~l~~h~~~V~sla~spdg~~LaS 826 (837)
||++. ..+..+. ...+..+.|+|+|++|++++.+ |.|.+||+.+.+.+....|.. ++.++|+|||++|++
T Consensus 88 yd~~~----~~i~~~~--~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~~~~-~t~~~WsPdGr~~~t 160 (194)
T PF08662_consen 88 YDVKG----KKIFSFG--TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFEHSD-ATDVEWSPDGRYLAT 160 (194)
T ss_pred EcCcc----cEeEeec--CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeeccccCc-EEEEEEcCCCCEEEE
Confidence 99962 4555553 5677899999999999998754 579999999888886666654 789999999999999
Q ss_pred EEC------CCcEEEeC
Q 003236 827 ASH------DKCVKIWK 837 (837)
Q Consensus 827 gs~------DG~I~IWd 837 (837)
+.. |..++||+
T Consensus 161 a~t~~r~~~dng~~Iw~ 177 (194)
T PF08662_consen 161 ATTSPRLRVDNGFKIWS 177 (194)
T ss_pred EEeccceeccccEEEEE
Confidence 874 78889985
|
|
| >PRK01029 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.36 E-value=2e-10 Score=131.40 Aligned_cols=215 Identities=13% Similarity=0.112 Sum_probs=142.5
Q ss_pred CeEEEEEcCCCCceeEEeeccccceEEEEEcCCCCe--EEEEEeCC--CcEEEEECCCCeeeeEEecCCCeeEEEEecCC
Q 003236 619 RTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKED--LLCSCDNN--SEIRYWSINNGSCAGVFKCQSGATQMRFQPRL 694 (837)
Q Consensus 619 g~I~IWDl~~~~~~~~~~~~h~~~V~sl~fspdg~~--llasgs~D--g~I~vwDl~t~~~i~~~~~~~~i~sl~~sp~g 694 (837)
+.|.+.|.+... .+.+......+.+-.|+|||.. ++++...+ ..|++.++..++........+......|+|||
T Consensus 165 ~~l~~~d~dG~~--~~~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt~~~g~~~~p~wSPDG 242 (428)
T PRK01029 165 GELWSVDYDGQN--LRPLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKILALQGNQLMPTFSPRK 242 (428)
T ss_pred ceEEEEcCCCCC--ceEcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceEeecCCCCccceEECCCC
Confidence 357777776543 3444445566778899999876 33344444 36888899888766665555666778999999
Q ss_pred CEEEEEEc-CC----eEEEEECCCC---eEEEEEcCCCCCEEEEEEcCCCCEEEEEe--CCeEEEE--EcCCCCCceeEE
Q 003236 695 GRILAAAI-EN----YISILDVETQ---VCRLKLQGHKNQVHSVCWNTSGEYLASVS--DELVRVW--SIGSGSKGECIH 762 (837)
Q Consensus 695 ~~llags~-dg----~I~iwDl~s~---~~~~~l~~h~~~V~sl~~spdg~~Lasgs--Dg~I~Iw--Dl~s~~~~~~i~ 762 (837)
+.|+.... +| .+.+|++..+ ........+.......+|+|||+.|+..+ ++...|| ++.... ....
T Consensus 243 ~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g--~~~~ 320 (428)
T PRK01029 243 KLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEG--QSPR 320 (428)
T ss_pred CEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccc--cceE
Confidence 99887664 22 3444776652 33333333334456789999999888776 5644444 543221 1223
Q ss_pred EeecCCCceEEEEEeCCCCEEEEEEcC---CeEEEEECCCCcEEEeccCCCCeeEEEEeCCCCEEEEEEC-C--CcEEEe
Q 003236 763 ELSCTGNKFHSCVFHPTFPSLLVIGCY---ETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASH-D--KCVKIW 836 (837)
Q Consensus 763 ~~~~~~~~I~sv~fspdg~~L~sgs~d---g~I~IwDl~s~~~~~l~~h~~~V~sla~spdg~~LaSgs~-D--G~I~IW 836 (837)
.+......+....|+|||+.|+..+.+ ..|++||+.+++...+......+..+.|+|||++|+..+. + ..|++|
T Consensus 321 ~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt~~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~v 400 (428)
T PRK01029 321 LLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQLTTSPENKESPSWAIDSLHLVYSAGNSNESELYLI 400 (428)
T ss_pred EeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEEccCCCCCccceEECCCCCEEEEEECCCCCceEEEE
Confidence 333344566788999999999887654 3799999999988766655556788999999998775443 2 345555
Q ss_pred C
Q 003236 837 K 837 (837)
Q Consensus 837 d 837 (837)
|
T Consensus 401 d 401 (428)
T PRK01029 401 S 401 (428)
T ss_pred E
Confidence 3
|
|
| >PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins | Back alignment and domain information |
|---|
Probab=99.34 E-value=1.1e-10 Score=118.95 Aligned_cols=154 Identities=19% Similarity=0.293 Sum_probs=110.8
Q ss_pred EEEEcCCCCEEEEEEC---C-------CcEEEEeCC-CCeEEEEecc-CCCCeEEEEEcCCCCEEEEE--eCCCeEEEEE
Q 003236 560 SCHFSPDGKLLATGGH---D-------KKAVLWCTE-SFTVKSTLEE-HTQWITDVRFSPSLSRLATS--SADRTVRVWD 625 (837)
Q Consensus 560 sl~fSpdg~~Lasgs~---D-------g~I~VWd~~-t~~~~~~l~~-h~~~I~~l~fspdg~~Latg--s~Dg~I~IWD 625 (837)
.+.|+++|++|++-.. | +...||.++ ....+..+.- ..+.|.+++|+|+++.|++. ..++.|.+||
T Consensus 10 ~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~lyd 89 (194)
T PF08662_consen 10 KLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLYD 89 (194)
T ss_pred EEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEEc
Confidence 5889999988765433 1 234555542 2233334432 34579999999999987655 3567999999
Q ss_pred cCCCCceeEEeeccccceEEEEEcCCCCeEEEEEe--CCCcEEEEECCCCeeeeEEecCCCeeEEEEecCCCEEEEEEc-
Q 003236 626 TENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCD--NNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAI- 702 (837)
Q Consensus 626 l~~~~~~~~~~~~h~~~V~sl~fspdg~~llasgs--~Dg~I~vwDl~t~~~i~~~~~~~~i~sl~~sp~g~~llags~- 702 (837)
++. + .+..+ +...+..+.|+|+|..++++|. ..|.|.+||+++.+.+..+.+. .++.++|+|+|++++++..
T Consensus 90 ~~~-~-~i~~~--~~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~~~-~~t~~~WsPdGr~~~ta~t~ 164 (194)
T PF08662_consen 90 VKG-K-KIFSF--GTQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFEHS-DATDVEWSPDGRYLATATTS 164 (194)
T ss_pred Ccc-c-EeEee--cCCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeeccccC-cEEEEEEcCCCCEEEEEEec
Confidence 973 2 24444 3567889999999987765542 3478999999999988887764 5789999999999998875
Q ss_pred -----CCeEEEEECCCCeEEEE
Q 003236 703 -----ENYISILDVETQVCRLK 719 (837)
Q Consensus 703 -----dg~I~iwDl~s~~~~~~ 719 (837)
|+.++||+.. |+.+..
T Consensus 165 ~r~~~dng~~Iw~~~-G~~l~~ 185 (194)
T PF08662_consen 165 PRLRVDNGFKIWSFQ-GRLLYK 185 (194)
T ss_pred cceeccccEEEEEec-CeEeEe
Confidence 6889999985 544443
|
|
| >COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.33 E-value=3.8e-09 Score=111.97 Aligned_cols=261 Identities=10% Similarity=0.125 Sum_probs=182.7
Q ss_pred CCcEEEEeCCCC--eEE-EEeccCCCCeEEEEEcCCCCEEEEEeCC---CeEEEEEcCCCCceeEEee---ccccceEEE
Q 003236 576 DKKAVLWCTESF--TVK-STLEEHTQWITDVRFSPSLSRLATSSAD---RTVRVWDTENPDYSLRTFT---GHSTTVMSL 646 (837)
Q Consensus 576 Dg~I~VWd~~t~--~~~-~~l~~h~~~I~~l~fspdg~~Latgs~D---g~I~IWDl~~~~~~~~~~~---~h~~~V~sl 646 (837)
+.-|++|++++. +.. ..+-.+.+.++-|+|+|+.++|+++..+ |.|..|.++...-.+..+. ....+.+.+
T Consensus 15 s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yv 94 (346)
T COG2706 15 SQGIYVFNLDTKTGELSLLQLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYV 94 (346)
T ss_pred CCceEEEEEeCcccccchhhhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEE
Confidence 467999988732 221 1223466789999999999999988664 7788888875322122221 122344889
Q ss_pred EEcCCCCeEEEEEeCCCcEEEEECCC-Cee---eeEEecCCC----------eeEEEEecCCCEEEEEEc-CCeEEEEEC
Q 003236 647 DFHPSKEDLLCSCDNNSEIRYWSINN-GSC---AGVFKCQSG----------ATQMRFQPRLGRILAAAI-ENYISILDV 711 (837)
Q Consensus 647 ~fspdg~~llasgs~Dg~I~vwDl~t-~~~---i~~~~~~~~----------i~sl~~sp~g~~llags~-dg~I~iwDl 711 (837)
++++++..++++....|.|.++-+.. |.. +..+.+.+. +.+..+.|+++++++.+. ...|.+|++
T Consensus 95 svd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~ 174 (346)
T COG2706 95 SVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDL 174 (346)
T ss_pred EECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEc
Confidence 99999998887777789999999965 433 233444333 788999999999988876 478999999
Q ss_pred CCCeEEEEEc---CCCCCEEEEEEcCCCCEEEEEe--CCeEEEEEcCCC-CCceeEEEeec------CCCceEEEEEeCC
Q 003236 712 ETQVCRLKLQ---GHKNQVHSVCWNTSGEYLASVS--DELVRVWSIGSG-SKGECIHELSC------TGNKFHSCVFHPT 779 (837)
Q Consensus 712 ~s~~~~~~l~---~h~~~V~sl~~spdg~~Lasgs--Dg~I~IwDl~s~-~~~~~i~~~~~------~~~~I~sv~fspd 779 (837)
..++....-. ......+.|.|+|++++..+.. +++|.+|..... ...+.+..+.. .......+.+++|
T Consensus 175 ~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~d 254 (346)
T COG2706 175 DDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPD 254 (346)
T ss_pred ccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCC
Confidence 9775432211 2445678999999999998877 999999999874 22334433332 2345678899999
Q ss_pred CCEEEEEEcCC-eEEEEECCC--CcEE---EeccCCCCeeEEEEeCCCCEEEEEECCC-cEEEe
Q 003236 780 FPSLLVIGCYE-TLELWNMTE--NKTL---TLSAHDKLVSSLAASTVNGMVASASHDK-CVKIW 836 (837)
Q Consensus 780 g~~L~sgs~dg-~I~IwDl~s--~~~~---~l~~h~~~V~sla~spdg~~LaSgs~DG-~I~IW 836 (837)
|++|+++.... .|.+|.+.. +++. ....+......+.|++.+++|+++..|+ .|.+|
T Consensus 255 GrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf 318 (346)
T COG2706 255 GRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQKSDNITVF 318 (346)
T ss_pred CCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEccCCCcEEEE
Confidence 99998887643 788887643 4332 2334455588999999999999988653 56665
|
|
| >TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL | Back alignment and domain information |
|---|
Probab=99.30 E-value=4.3e-09 Score=118.71 Aligned_cols=255 Identities=11% Similarity=0.046 Sum_probs=162.2
Q ss_pred CCCEEEEEECCCcEEEEeCCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeEEeeccccce--
Q 003236 566 DGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTV-- 643 (837)
Q Consensus 566 dg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V-- 643 (837)
++..+++++.++.|+.+|..+++.+...... +.+.+.-.. .+..++.++.++.|+.||..+++. +..+......+
T Consensus 104 ~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~-~~~~~~p~v-~~~~v~v~~~~g~l~a~d~~tG~~-~W~~~~~~~~~~~ 180 (377)
T TIGR03300 104 DGGLVFVGTEKGEVIALDAEDGKELWRAKLS-SEVLSPPLV-ANGLVVVRTNDGRLTALDAATGER-LWTYSRVTPALTL 180 (377)
T ss_pred cCCEEEEEcCCCEEEEEECCCCcEeeeeccC-ceeecCCEE-ECCEEEEECCCCeEEEEEcCCCce-eeEEccCCCceee
Confidence 4667888889999999999999988766432 222221111 345677788899999999998774 33322211111
Q ss_pred ---EEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeeEEecCCC-----e---eEEEEec--CCCEEEEEEcCCeEEEEE
Q 003236 644 ---MSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSG-----A---TQMRFQP--RLGRILAAAIENYISILD 710 (837)
Q Consensus 644 ---~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~~~~-----i---~sl~~sp--~g~~llags~dg~I~iwD 710 (837)
.+..+. + . .++.+..++.+..+|+++|+.+........ + ..+.-+| .++.+++++.++.++.||
T Consensus 181 ~~~~sp~~~-~-~-~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d 257 (377)
T TIGR03300 181 RGSASPVIA-D-G-GVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALD 257 (377)
T ss_pred cCCCCCEEE-C-C-EEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEEECCEEEEEEcCCEEEEEE
Confidence 111122 2 3 455777789999999999987765542111 0 0010011 356888889999999999
Q ss_pred CCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecC-CCceEEEEEeCCCCEEEEEEc
Q 003236 711 VETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCT-GNKFHSCVFHPTFPSLLVIGC 788 (837)
Q Consensus 711 l~s~~~~~~l~~h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~-~~~I~sv~fspdg~~L~sgs~ 788 (837)
.++++.+..... . ....... ++..+++++ ||.|..+|..++ +.+...... .....+... .+..|++++.
T Consensus 258 ~~tG~~~W~~~~-~-~~~~p~~--~~~~vyv~~~~G~l~~~d~~tG---~~~W~~~~~~~~~~ssp~i--~g~~l~~~~~ 328 (377)
T TIGR03300 258 LRSGRVLWKRDA-S-SYQGPAV--DDNRLYVTDADGVVVALDRRSG---SELWKNDELKYRQLTAPAV--VGGYLVVGDF 328 (377)
T ss_pred CCCCcEEEeecc-C-CccCceE--eCCEEEEECCCCeEEEEECCCC---cEEEccccccCCccccCEE--ECCEEEEEeC
Confidence 999988776652 1 1122222 355566666 999999999887 344333211 122222223 3568999999
Q ss_pred CCeEEEEECCCCcEE-EeccCCCCe-eEEEEeCCCCEEEEEECCCcEEEeC
Q 003236 789 YETLELWNMTENKTL-TLSAHDKLV-SSLAASTVNGMVASASHDKCVKIWK 837 (837)
Q Consensus 789 dg~I~IwDl~s~~~~-~l~~h~~~V-~sla~spdg~~LaSgs~DG~I~IWd 837 (837)
+|.|+++|..+++.+ .+..+...+ ....+. + +.|+.++.||.|+.|.
T Consensus 329 ~G~l~~~d~~tG~~~~~~~~~~~~~~~sp~~~-~-~~l~v~~~dG~l~~~~ 377 (377)
T TIGR03300 329 EGYLHWLSREDGSFVARLKTDGSGIASPPVVV-G-DGLLVQTRDGDLYAFR 377 (377)
T ss_pred CCEEEEEECCCCCEEEEEEcCCCccccCCEEE-C-CEEEEEeCCceEEEeC
Confidence 999999999999988 454454433 333333 3 4588889999998874
|
Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ. |
| >KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.30 E-value=6.7e-11 Score=138.54 Aligned_cols=267 Identities=16% Similarity=0.236 Sum_probs=184.2
Q ss_pred CCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEe------ccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCC
Q 003236 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTL------EEHTQWITDVRFSPSLSRLATSSADRTVRVWDTEN 628 (837)
Q Consensus 555 ~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l------~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~ 628 (837)
-+++.+..+-. +||..|. .-.|.+||+..+..+..+ ..|.. .... .-.+.+++++..-+.+.+=+...
T Consensus 7 ~~~l~~~~~~~--~~llag~-gp~i~~yd~~s~~li~~~~~~~~~~~H~~--e~~~-~l~~~~~v~~~~~~~v~~~~~~~ 80 (967)
T KOG0974|consen 7 LGPLNLPQLVS--DYLLAGS-GPEILVYDLSSGCLIRHLIQSKILEVHRG--EGKV-KLLSGKIVTCAKSDEVYVKEASN 80 (967)
T ss_pred cccccchhhcc--ceeeecC-CCceEEeeCCchhHhhhhhhhcccccccc--cccc-eeccceEEEEEeecceeecchhh
Confidence 34455665554 4666554 357999999887665443 23400 0000 00233555555444443332221
Q ss_pred CCceeEEeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeeEEecCCCee-----EEEEecCCCEEEEEEcC
Q 003236 629 PDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGAT-----QMRFQPRLGRILAAAIE 703 (837)
Q Consensus 629 ~~~~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~~~~i~-----sl~~sp~g~~llags~d 703 (837)
..+......|....+..+.. .++....+..+.+||...+.....+.+..... -+.++++.-++++|+.-
T Consensus 81 -----~~~~~~s~wi~g~~l~~e~k-~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv~ 154 (967)
T KOG0974|consen 81 -----QIIERFSDWIFGAKLFEENK-KIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIASGSVF 154 (967)
T ss_pred -----hhhhhccccccccchhhhcc-eEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEecccc
Confidence 11112223344444444434 44455568899999999887777666544322 23345555678888888
Q ss_pred CeEEEEECCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCE
Q 003236 704 NYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPS 782 (837)
Q Consensus 704 g~I~iwDl~s~~~~~~l~~h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fspdg~~ 782 (837)
+.|.+|+.........+.+|++.|.++.|+.||.++++++ |.++++|++.+.+... ...-+|...+..++|+|. .
T Consensus 155 ~~iivW~~~~dn~p~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~--~~~fgHsaRvw~~~~~~n--~ 230 (967)
T KOG0974|consen 155 GEIIVWKPHEDNKPIRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLG--CTGFGHSARVWACCFLPN--R 230 (967)
T ss_pred ccEEEEeccccCCcceecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccC--cccccccceeEEEEeccc--e
Confidence 9999999874444446889999999999999999999999 8899999999885322 355578999999999999 8
Q ss_pred EEEEEcCCeEEEEECCCCcEEEeccCC-CCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 003236 783 LLVIGCYETLELWNMTENKTLTLSAHD-KLVSSLAASTVNGMVASASHDKCVKIWK 837 (837)
Q Consensus 783 L~sgs~dg~I~IwDl~s~~~~~l~~h~-~~V~sla~spdg~~LaSgs~DG~I~IWd 837 (837)
|++++.|-+.++|+........+..|. ..|+.++..++...++|++.||.+++|+
T Consensus 231 i~t~gedctcrvW~~~~~~l~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~ 286 (967)
T KOG0974|consen 231 IITVGEDCTCRVWGVNGTQLEVYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWD 286 (967)
T ss_pred eEEeccceEEEEEecccceehhhhhhhhcceeEEEEcCCceEEEeeccCcchhhhh
Confidence 999999999999977666555666664 5799999999999999999999999996
|
|
| >KOG4547 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.29 E-value=5.7e-10 Score=124.22 Aligned_cols=187 Identities=17% Similarity=0.274 Sum_probs=151.6
Q ss_pred CCCCEEEEEECCCcEEEEeCCCCeEEEEecc---CCCCeEEEEEc------C--------------CCCEEEEEeCCCeE
Q 003236 565 PDGKLLATGGHDKKAVLWCTESFTVKSTLEE---HTQWITDVRFS------P--------------SLSRLATSSADRTV 621 (837)
Q Consensus 565 pdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~---h~~~I~~l~fs------p--------------dg~~Latgs~Dg~I 621 (837)
|-..++|....||.++||+..+++....+.. -.+..++..|. | +...++-|...|.|
T Consensus 3 ~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v 82 (541)
T KOG4547|consen 3 PALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSV 82 (541)
T ss_pred chhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccE
Confidence 4566899999999999999998887766532 23445555552 1 23467788889999
Q ss_pred EEEEcCCCCceeEEe-eccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeeEEec-CCCeeEEEEecCCCEEEE
Q 003236 622 RVWDTENPDYSLRTF-TGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILA 699 (837)
Q Consensus 622 ~IWDl~~~~~~~~~~-~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~-~~~i~sl~~sp~g~~lla 699 (837)
.+|++..++...+.. ..|.+.|.++.++.+- ..|.+++.|+.+.+|+......++.+.. ...+.+++++||++.+++
T Consensus 83 ~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~-~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~D~~~l~~ 161 (541)
T KOG4547|consen 83 LLYSVAGGEITAKLSTDKHYGNVNEILDAQRL-GCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCISPDGKILLT 161 (541)
T ss_pred EEEEecCCeEEEEEecCCCCCcceeeeccccc-CceEecCCceeEEEEecccceeeeeeccCCCccceEEEcCCCCEEEe
Confidence 999999887544443 5789999999988774 4777999999999999999999998886 455889999999998888
Q ss_pred EEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEcCC-----CCEEEEEe--CCeEEEEEcCC
Q 003236 700 AAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTS-----GEYLASVS--DELVRVWSIGS 754 (837)
Q Consensus 700 gs~dg~I~iwDl~s~~~~~~l~~h~~~V~sl~~spd-----g~~Lasgs--Dg~I~IwDl~s 754 (837)
++ +.|.+||+++++.+..|.+|.++|+++.|..+ |.++.++. +..+.+|-+..
T Consensus 162 as--~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 162 AS--RQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK 221 (541)
T ss_pred cc--ceEEEEEccCceEEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence 76 79999999999999999999999999999876 77777766 66788887765
|
|
| >KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.28 E-value=3.9e-10 Score=123.86 Aligned_cols=264 Identities=17% Similarity=0.222 Sum_probs=169.7
Q ss_pred EEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeC-----------CCeEEEEEcC
Q 003236 559 ESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA-----------DRTVRVWDTE 627 (837)
Q Consensus 559 ~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~-----------Dg~I~IWDl~ 627 (837)
+-+.|||.|.||+|--.-| |.+|--++...+..+. |.+ |.-+.|||+.+||+|-+. ...|+|||+.
T Consensus 214 tyv~wSP~GTYL~t~Hk~G-I~lWGG~~f~r~~RF~-Hp~-Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~ 290 (698)
T KOG2314|consen 214 TYVRWSPKGTYLVTFHKQG-IALWGGESFDRIQRFY-HPG-VQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIA 290 (698)
T ss_pred eeEEecCCceEEEEEeccc-eeeecCccHHHHHhcc-CCC-ceeeecCCccceEEEecCCccccCcccCCCceEEEEEcc
Confidence 4589999999999986554 8899888877777774 654 889999999999999654 2579999999
Q ss_pred CCCceeEEeec--cccce-EEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeeEEec-CCCeeEEEEecCCCEEEEEEcC
Q 003236 628 NPDYSLRTFTG--HSTTV-MSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAIE 703 (837)
Q Consensus 628 ~~~~~~~~~~~--h~~~V-~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~-~~~i~sl~~sp~g~~llags~d 703 (837)
++.. .+.+.. ....+ .-+.|+.|++++.... ...|.||+..+...+..-.. ..+|....|+|.+..|+.-...
T Consensus 291 tG~l-krsF~~~~~~~~~WP~frWS~DdKy~Arm~--~~sisIyEtpsf~lld~Kslki~gIr~FswsP~~~llAYwtpe 367 (698)
T KOG2314|consen 291 TGLL-KRSFPVIKSPYLKWPIFRWSHDDKYFARMT--GNSISIYETPSFMLLDKKSLKISGIRDFSWSPTSNLLAYWTPE 367 (698)
T ss_pred ccch-hcceeccCCCccccceEEeccCCceeEEec--cceEEEEecCceeeecccccCCccccCcccCCCcceEEEEccc
Confidence 9874 444443 22222 3467898877544333 35688887665332211111 2345555555554443322110
Q ss_pred -----C----------------------------------------------------eEEEEECCCCeEEEEEcCCCCC
Q 003236 704 -----N----------------------------------------------------YISILDVETQVCRLKLQGHKNQ 726 (837)
Q Consensus 704 -----g----------------------------------------------------~I~iwDl~s~~~~~~l~~h~~~ 726 (837)
. .+.|+.++........-.-...
T Consensus 368 ~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~velke~ 447 (698)
T KOG2314|consen 368 TNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVVELKES 447 (698)
T ss_pred ccCCcceEEEEecCccceeeeccceeeeccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEeeccCCCceeeecchh
Confidence 0 1222222221111111113456
Q ss_pred EEEEEEcCCCCEEEEEe----CCeEEEEEcC-CCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEc---CCeEEEEECC
Q 003236 727 VHSVCWNTSGEYLASVS----DELVRVWSIG-SGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGC---YETLELWNMT 798 (837)
Q Consensus 727 V~sl~~spdg~~Lasgs----Dg~I~IwDl~-s~~~~~~i~~~~~~~~~I~sv~fspdg~~L~sgs~---dg~I~IwDl~ 798 (837)
|...+|-|.|..+++-+ ..++.+|.+. +......+..+. ....+.+.|+|.|+++++++- .|.+.+||+.
T Consensus 448 vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~d--k~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~ 525 (698)
T KOG2314|consen 448 VIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKELD--KKFANTVFWSPKGRFVVVAALVSRRGDLEFYDTD 525 (698)
T ss_pred eeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhhhhc--ccccceEEEcCCCcEEEEEEecccccceEEEecc
Confidence 77889999998777655 3489999988 343344455544 356788999999999887754 5799999988
Q ss_pred C--CcEEEeccCCCCeeEEEEeCCCCEEEEEECCC
Q 003236 799 E--NKTLTLSAHDKLVSSLAASTVNGMVASASHDK 831 (837)
Q Consensus 799 s--~~~~~l~~h~~~V~sla~spdg~~LaSgs~DG 831 (837)
. .+.+....| ...+.+.|.|.|+|++|++.-.
T Consensus 526 ~a~~k~~~~~eh-~~at~veWDPtGRYvvT~ss~w 559 (698)
T KOG2314|consen 526 YADLKDTASPEH-FAATEVEWDPTGRYVVTSSSSW 559 (698)
T ss_pred hhhhhhccCccc-cccccceECCCCCEEEEeeehh
Confidence 4 333333444 3467899999999999998643
|
|
| >KOG4190 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.25 E-value=4e-11 Score=130.58 Aligned_cols=280 Identities=15% Similarity=0.214 Sum_probs=193.9
Q ss_pred EEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCC-------CeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCC
Q 003236 547 EFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES-------FTVKSTLEEHTQWITDVRFSPSLSRLATSSADR 619 (837)
Q Consensus 547 ~~~~l~~H~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t-------~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg 619 (837)
.+..+.+|..+|..++--.+.+-+++++.|++|++|.++. ..+..++..|+.+|.++.|..+.++++++ ||
T Consensus 727 rL~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc--D~ 804 (1034)
T KOG4190|consen 727 RLCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASC--DG 804 (1034)
T ss_pred eeecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeec--cC
Confidence 4567889999999998877888899999999999998753 34667888999999999999998887765 88
Q ss_pred eEEEEEcCCCCceeEEe----eccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeeEEec------CCCeeEEE
Q 003236 620 TVRVWDTENPDYSLRTF----TGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC------QSGATQMR 689 (837)
Q Consensus 620 ~I~IWDl~~~~~~~~~~----~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~------~~~i~sl~ 689 (837)
-|.+||.--+....... .+..+.|.|+.- -+...+++.|+...+|+++|.+.++.+..++. +.-+.+++
T Consensus 805 giHlWDPFigr~Laq~~dapk~~a~~~ikcl~n-v~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~ia 883 (1034)
T KOG4190|consen 805 GIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLEN-VDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIA 883 (1034)
T ss_pred cceeecccccchhHhhhcCcccCCCceeEeccc-CcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEE
Confidence 89999976544321111 122233444431 13344555668889999999999877666653 23478999
Q ss_pred EecCCCEEEEEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEe-CCeEEE-EEcCCCCCceeEEEeecC
Q 003236 690 FQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRV-WSIGSGSKGECIHELSCT 767 (837)
Q Consensus 690 ~sp~g~~llags~dg~I~iwDl~s~~~~~~l~~h~~~V~sl~~spdg~~Lasgs-Dg~I~I-wDl~s~~~~~~i~~~~~~ 767 (837)
+.+.|+.++++-..|.|.+.|.++|+.+..++..+.....++- |....|+... |..+.| |..-.+ ......+..
T Consensus 884 Va~~GN~lAa~LSnGci~~LDaR~G~vINswrpmecdllqlaa-psdq~L~~saldHslaVnWhaldg---imh~q~kpp 959 (1034)
T KOG4190|consen 884 VADKGNKLAAALSNGCIAILDARNGKVINSWRPMECDLLQLAA-PSDQALAQSALDHSLAVNWHALDG---IMHLQDKPP 959 (1034)
T ss_pred eccCcchhhHHhcCCcEEEEecCCCceeccCCcccchhhhhcC-chhHHHHhhcccceeEeeehhcCC---eeeeccCCC
Confidence 9999999999999999999999999998877765544444442 4555566555 888888 876554 122222211
Q ss_pred CCceEEEEEeCCCCEEEEEEcCCeEEEEECCCC-------cEEEeccCCCCeeEEEEeCCCCEEEEEECCCcEEE
Q 003236 768 GNKFHSCVFHPTFPSLLVIGCYETLELWNMTEN-------KTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKI 835 (837)
Q Consensus 768 ~~~I~sv~fspdg~~L~sgs~dg~I~IwDl~s~-------~~~~l~~h~~~V~sla~spdg~~LaSgs~DG~I~I 835 (837)
..+.. ..-.-|..+++......+.+|--... ..++-....+..++++.-|-+.-+..|...|.|.+
T Consensus 960 pepah--flqsvgpSLV~a~~Gn~lgVYad~a~~ha~stitKiR~d~f~G~lTala~LPLN~afLaGne~G~IaL 1032 (1034)
T KOG4190|consen 960 PEPAH--FLQSVGPSLVTAQNGNILGVYADSAELHAESTITKIRPDEFPGTLTALAPLPLNCAFLAGNEHGAIAL 1032 (1034)
T ss_pred Ccchh--hhhccCceeEEeccCcEEEEEecchhhhhhhhhccccccccCCccceeeeccccchhhccCCCCceee
Confidence 11111 11233556777777777888742211 11223345567888888887777778888888875
|
|
| >KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.24 E-value=1.6e-09 Score=119.90 Aligned_cols=248 Identities=12% Similarity=0.170 Sum_probs=173.7
Q ss_pred EEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEeccCCCCeEEEEEcCCC--CEEEE-----EeCCCeEEEEEcCCCC-
Q 003236 559 ESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSL--SRLAT-----SSADRTVRVWDTENPD- 630 (837)
Q Consensus 559 ~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~I~~l~fspdg--~~Lat-----gs~Dg~I~IWDl~~~~- 630 (837)
++..|+.|..+.|-- ..+.|.+|++.+.+.+.. .-|...|+.+.++|.+ ..||+ .+.-..|+||.+....
T Consensus 129 W~~qfs~dEsl~arl-v~nev~f~~~~~f~~~~~-kl~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~ 206 (566)
T KOG2315|consen 129 WVPQFSIDESLAARL-VSNEVQFYDLGSFKTIQH-KLSVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQ 206 (566)
T ss_pred cccccccchhhhhhh-hcceEEEEecCCccceee-eeeccceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccccc
Confidence 688999987654432 246799999887544422 2367889999999863 33443 3445689999887322
Q ss_pred -cee--EEeeccccceEEEEEcCCCCeEEEEEeC--C---------CcEEEEECCCCeeeeEEecCCCeeEEEEecCCCE
Q 003236 631 -YSL--RTFTGHSTTVMSLDFHPSKEDLLCSCDN--N---------SEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGR 696 (837)
Q Consensus 631 -~~~--~~~~~h~~~V~sl~fspdg~~llasgs~--D---------g~I~vwDl~t~~~i~~~~~~~~i~sl~~sp~g~~ 696 (837)
..+ +.|. ...-..+.|++-|..+|+..+. | .+++++++...++...+...++|.++.|++++..
T Consensus 207 ~~~~a~ksFF--kadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L~k~GPVhdv~W~~s~~E 284 (566)
T KOG2315|consen 207 HQPVANKSFF--KADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPLLKEGPVHDVTWSPSGRE 284 (566)
T ss_pred cchhhhcccc--ccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEEecCCCCCceEEEECCCCCE
Confidence 111 2222 2334567888887777665442 2 3788999986677777777899999999999987
Q ss_pred EEEEE--cCCeEEEEECCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEe----CCeEEEEEcCCCCCceeEEEeecCCCc
Q 003236 697 ILAAA--IENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS----DELVRVWSIGSGSKGECIHELSCTGNK 770 (837)
Q Consensus 697 llags--~dg~I~iwDl~s~~~~~~l~~h~~~V~sl~~spdg~~Lasgs----Dg~I~IwDl~s~~~~~~i~~~~~~~~~ 770 (837)
++++. .-..+.|||++ +.++..+ .+++-+++-|+|.|++|+.++ -|.|.|||+.+. +++..+... .
T Consensus 285 F~VvyGfMPAkvtifnlr-~~~v~df--~egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~---K~i~~~~a~--~ 356 (566)
T KOG2315|consen 285 FAVVYGFMPAKVTIFNLR-GKPVFDF--PEGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNR---KLIAKFKAA--N 356 (566)
T ss_pred EEEEEecccceEEEEcCC-CCEeEeC--CCCCccceEECCCCCEEEEeecCCCCCceEEEeccch---hhccccccC--C
Confidence 76654 45789999987 4455555 456778999999999999887 569999999885 666666543 3
Q ss_pred eEEEEEeCCCCEEEEEEc------CCeEEEEECCCCcEEEeccCCCCeeEEEEeC
Q 003236 771 FHSCVFHPTFPSLLVIGC------YETLELWNMTENKTLTLSAHDKLVSSLAAST 819 (837)
Q Consensus 771 I~sv~fspdg~~L~sgs~------dg~I~IwDl~s~~~~~l~~h~~~V~sla~sp 819 (837)
.+-+.|+|||.+|++++. |+.++||+....... ..........++|-|
T Consensus 357 tt~~eW~PdGe~flTATTaPRlrvdNg~KiwhytG~~l~-~~~f~sEL~qv~W~P 410 (566)
T KOG2315|consen 357 TTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYTGSLLH-EKMFKSELLQVEWRP 410 (566)
T ss_pred ceEEEEcCCCcEEEEEeccccEEecCCeEEEEecCceee-hhhhhHhHhheeeee
Confidence 466899999999999886 578999998654433 111122566777765
|
|
| >TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain | Back alignment and domain information |
|---|
Probab=99.22 E-value=3.4e-08 Score=108.54 Aligned_cols=233 Identities=12% Similarity=0.136 Sum_probs=148.0
Q ss_pred EcCCCCEEEEEEC----------CCcEEEEeCCCCeEEEEeccCC-------CCeEEEEEcCCCCEEEEEeC--CCeEEE
Q 003236 563 FSPDGKLLATGGH----------DKKAVLWCTESFTVKSTLEEHT-------QWITDVRFSPSLSRLATSSA--DRTVRV 623 (837)
Q Consensus 563 fSpdg~~Lasgs~----------Dg~I~VWd~~t~~~~~~l~~h~-------~~I~~l~fspdg~~Latgs~--Dg~I~I 623 (837)
+||||+.|+++.. +..|.|||+.+++.+..+.... .....++++|||++|++... +..|.|
T Consensus 53 ~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~V 132 (352)
T TIGR02658 53 VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGV 132 (352)
T ss_pred ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhccCccceEEECCCCCEEEEecCCCCCEEEE
Confidence 9999998877654 7899999999999998886422 23447899999999998763 689999
Q ss_pred EEcCCCCceeEEeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCC-Ceee-e---EEecC-CCe-eEEEEec-CCC
Q 003236 624 WDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN-GSCA-G---VFKCQ-SGA-TQMRFQP-RLG 695 (837)
Q Consensus 624 WDl~~~~~~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t-~~~i-~---~~~~~-~~i-~sl~~sp-~g~ 695 (837)
.|+.+++. +..+.-. +...-+..+.+ .+++ .| .||......+.+ ++.. . .+... ..+ ..-.|.+ +++
T Consensus 133 vD~~~~kv-v~ei~vp-~~~~vy~t~e~-~~~~-~~-~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP~~~~~dg~ 207 (352)
T TIGR02658 133 VDLEGKAF-VRMMDVP-DCYHIFPTAND-TFFM-HC-RDGSLAKVGYGTKGNPKIKPTEVFHPEDEYLINHPAYSNKSGR 207 (352)
T ss_pred EECCCCcE-EEEEeCC-CCcEEEEecCC-ccEE-Ee-ecCceEEEEecCCCceEEeeeeeecCCccccccCCceEcCCCc
Confidence 99998765 4433321 11111222221 1111 12 244444333322 2211 1 11110 000 0014456 666
Q ss_pred EEEEEEcCCeEEEEECCCC-----eEEEEEcC-------CCCCEEEEEEcCCCCEEEEEe-----------CCeEEEEEc
Q 003236 696 RILAAAIENYISILDVETQ-----VCRLKLQG-------HKNQVHSVCWNTSGEYLASVS-----------DELVRVWSI 752 (837)
Q Consensus 696 ~llags~dg~I~iwDl~s~-----~~~~~l~~-------h~~~V~sl~~spdg~~Lasgs-----------Dg~I~IwDl 752 (837)
++++..+ |.|++.|+... .....+.. ..+.+.-++++++++.+++.. .+.|.++|.
T Consensus 208 ~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~ 286 (352)
T TIGR02658 208 LVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDA 286 (352)
T ss_pred EEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEEC
Confidence 6655555 99999996442 22222211 233444599999999888742 258999999
Q ss_pred CCCCCceeEEEeecCCCceEEEEEeCCCC-EEEEEE-cCCeEEEEECCCCcEEEe
Q 003236 753 GSGSKGECIHELSCTGNKFHSCVFHPTFP-SLLVIG-CYETLELWNMTENKTLTL 805 (837)
Q Consensus 753 ~s~~~~~~i~~~~~~~~~I~sv~fspdg~-~L~sgs-~dg~I~IwDl~s~~~~~l 805 (837)
.+. +.+..+.. +..+..++++||++ .|++.. .++.|.++|..+++.+..
T Consensus 287 ~t~---kvi~~i~v-G~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k~i~~ 337 (352)
T TIGR02658 287 KTG---KRLRKIEL-GHEIDSINVSQDAKPLLYALSTGDKTLYIFDAETGKELSS 337 (352)
T ss_pred CCC---eEEEEEeC-CCceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCeEEee
Confidence 887 56666553 66899999999999 777776 467899999999988743
|
This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome. |
| >KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.22 E-value=6.9e-10 Score=130.18 Aligned_cols=145 Identities=22% Similarity=0.369 Sum_probs=121.1
Q ss_pred cCCCeEEcccCCCceEEeecCCCCCCCCccccccccCCCeeeeEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEe
Q 003236 504 DMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWC 583 (837)
Q Consensus 504 ~~~~~v~~Gs~D~~v~~w~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~H~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd 583 (837)
...-.+++|+.-+.+-+|....+..+ ..+.+|.+.|.++.|+-||+++++.++|.++++|+
T Consensus 143 ~~~~~i~~gsv~~~iivW~~~~dn~p-------------------~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~ 203 (967)
T KOG0974|consen 143 AEELYIASGSVFGEIIVWKPHEDNKP-------------------IRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWP 203 (967)
T ss_pred CcEEEEEeccccccEEEEeccccCCc-------------------ceecccCCceEEEEEccCCcEEEEEecCcceeeee
Confidence 34457888888888889976633211 15789999999999999999999999999999999
Q ss_pred CCCCeEEE-EeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeEEeeccc-cceEEEEEcCCCCeEEEEEeC
Q 003236 584 TESFTVKS-TLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHS-TTVMSLDFHPSKEDLLCSCDN 661 (837)
Q Consensus 584 ~~t~~~~~-~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~~~~~~~~~~~h~-~~V~sl~fspdg~~llasgs~ 661 (837)
+++.+... +.-+|+..|+.++|.|+ +++|++.|.+.++|+.+... +..+.+|. ..|..++..++ ..++++++.
T Consensus 204 i~s~~~~~~~~fgHsaRvw~~~~~~n--~i~t~gedctcrvW~~~~~~--l~~y~~h~g~~iw~~~~~~~-~~~~vT~g~ 278 (967)
T KOG0974|consen 204 IDSREVLGCTGFGHSARVWACCFLPN--RIITVGEDCTCRVWGVNGTQ--LEVYDEHSGKGIWKIAVPIG-VIIKVTGGN 278 (967)
T ss_pred cccccccCcccccccceeEEEEeccc--eeEEeccceEEEEEecccce--ehhhhhhhhcceeEEEEcCC-ceEEEeecc
Confidence 99988775 66689999999999988 99999999999999777533 45777775 56888988876 557889999
Q ss_pred CCcEEEEECCC
Q 003236 662 NSEIRYWSINN 672 (837)
Q Consensus 662 Dg~I~vwDl~t 672 (837)
|+.+++||+..
T Consensus 279 Ds~lk~~~l~~ 289 (967)
T KOG0974|consen 279 DSTLKLWDLNG 289 (967)
T ss_pred Ccchhhhhhhc
Confidence 99999999865
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.22 E-value=1.4e-09 Score=121.94 Aligned_cols=276 Identities=14% Similarity=0.197 Sum_probs=195.6
Q ss_pred CCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCC---------------eEEEEeccCCCCeEEEEEcCCCCEEEEEeCC
Q 003236 554 STSKVESCHFSPDGKLLATGGHDKKAVLWCTESF---------------TVKSTLEEHTQWITDVRFSPSLSRLATSSAD 618 (837)
Q Consensus 554 H~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~---------------~~~~~l~~h~~~I~~l~fspdg~~Latgs~D 618 (837)
......|+.|+....|+|+|+.||.++|..+.+. ..-.++.+|++.|.-+.|+.+...|-|+..+
T Consensus 13 nnvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~ 92 (1189)
T KOG2041|consen 13 NNVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTS 92 (1189)
T ss_pred CCceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCCC
Confidence 3456889999999999999999999999966531 1124578999999999999998999999999
Q ss_pred CeEEEEEcCCCCceeEEe-eccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeeEEecCCCeeEEEEecCCCEE
Q 003236 619 RTVRVWDTENPDYSLRTF-TGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRI 697 (837)
Q Consensus 619 g~I~IWDl~~~~~~~~~~-~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~~~~i~sl~~sp~g~~l 697 (837)
|.|.||-+-.+..+-..+ ....+.|.+++|..+|.. ++....||.|.+=.+.....-..--.......+.|++|...+
T Consensus 93 GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~k-IcIvYeDGavIVGsvdGNRIwgKeLkg~~l~hv~ws~D~~~~ 171 (1189)
T KOG2041|consen 93 GLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTK-ICIVYEDGAVIVGSVDGNRIWGKELKGQLLAHVLWSEDLEQA 171 (1189)
T ss_pred ceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcE-EEEEEccCCEEEEeeccceecchhcchheccceeecccHHHH
Confidence 999999988766532222 234567899999999875 456677888877666543322111112335578999999999
Q ss_pred EEEEcCCeEEEEECCCC-------eEEEE----EcCCCCCEEEEEEc--------CCCCEEEEEe-CCeEEEEEcCCCCC
Q 003236 698 LAAAIENYISILDVETQ-------VCRLK----LQGHKNQVHSVCWN--------TSGEYLASVS-DELVRVWSIGSGSK 757 (837)
Q Consensus 698 lags~dg~I~iwDl~s~-------~~~~~----l~~h~~~V~sl~~s--------pdg~~Lasgs-Dg~I~IwDl~s~~~ 757 (837)
+.+-..|.+.+||.... .+... +......|-.++|. ||...|+++- .|.+.|..-.+...
T Consensus 172 Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~QiMR~eND~~ 251 (1189)
T KOG2041|consen 172 LFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQIMRSENDPE 251 (1189)
T ss_pred HhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcCceehhhhhcCCCC
Confidence 99989999999997642 12111 12223346677774 4777888888 78877776554432
Q ss_pred ceeEEEeecCCCceEEEEEeCCCCEEEEEEcCC---------eEEEEECCCCcEEEeccCCCCeeEEEEeCCCCEEEEEE
Q 003236 758 GECIHELSCTGNKFHSCVFHPTFPSLLVIGCYE---------TLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASAS 828 (837)
Q Consensus 758 ~~~i~~~~~~~~~I~sv~fspdg~~L~sgs~dg---------~I~IwDl~s~~~~~l~~h~~~V~sla~spdg~~LaSgs 828 (837)
+..+ ..+-.+..+.|+++|..|++++.+. .|.+|..-..-.-++......|++++|-..|-.+|.+
T Consensus 252 Pvv~----dtgm~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fysp~G~i~gtlkvpg~~It~lsWEg~gLriA~A- 326 (1189)
T KOG2041|consen 252 PVVV----DTGMKIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYSPYGHIVGTLKVPGSCITGLSWEGTGLRIAIA- 326 (1189)
T ss_pred CeEE----ecccEeecceecCCCcEEEEccCcccccCccccceEEEeccchhheEEEecCCceeeeeEEcCCceEEEEE-
Confidence 2222 2246788899999999999998753 5666654433333677778899999998777666665
Q ss_pred CCCcEEE
Q 003236 829 HDKCVKI 835 (837)
Q Consensus 829 ~DG~I~I 835 (837)
.|+.|++
T Consensus 327 vdsfiyf 333 (1189)
T KOG2041|consen 327 VDSFIYF 333 (1189)
T ss_pred ecceEEE
Confidence 4666654
|
|
| >KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.21 E-value=3.8e-10 Score=115.75 Aligned_cols=199 Identities=20% Similarity=0.255 Sum_probs=155.7
Q ss_pred CeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEE--EeccCCCCeEEEEEcC-CCCEEEEEeCCCeEEEEEcCCCCcee
Q 003236 557 KVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKS--TLEEHTQWITDVRFSP-SLSRLATSSADRTVRVWDTENPDYSL 633 (837)
Q Consensus 557 ~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~~~--~l~~h~~~I~~l~fsp-dg~~Latgs~Dg~I~IWDl~~~~~~~ 633 (837)
...++.|++.+.-++++-.+|.+.+-+........ .++.|.-.++-..|+. +.+++++|+.|+.+..||++.++..+
T Consensus 123 ~~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i 202 (339)
T KOG0280|consen 123 EALSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFI 202 (339)
T ss_pred eeeEEEeeccCceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCccee
Confidence 34578899989999999999999976655555444 7889999999999986 46789999999999999999544333
Q ss_pred -EEeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECC-CCeeeeEEecCCCeeEEEEecCCC-EEEEEEcCCeEEEEE
Q 003236 634 -RTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSIN-NGSCAGVFKCQSGATQMRFQPRLG-RILAAAIENYISILD 710 (837)
Q Consensus 634 -~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~-t~~~i~~~~~~~~i~sl~~sp~g~-~llags~dg~I~iwD 710 (837)
.....|...|.+|.-+|....++++|+.|-.|++||.+ -++++..-...++|..+.++|... .+++++.-+..+|.+
T Consensus 203 ~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~v~GGVWRi~~~p~~~~~lL~~CMh~G~ki~~ 282 (339)
T KOG0280|consen 203 WHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKAKVGGGVWRIKHHPEIFHRLLAACMHNGAKILD 282 (339)
T ss_pred eecceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCccccCccccceEEEEecchhhhHHHHHHHhcCceEEE
Confidence 33667999999999999888999999999999999999 478888777789999999999533 455666666677777
Q ss_pred CCCC--e---EEEEEcCCCCCEEEEEEcCCCCEEEEEe--CCeEE-EEEcCCC
Q 003236 711 VETQ--V---CRLKLQGHKNQVHSVCWNTSGEYLASVS--DELVR-VWSIGSG 755 (837)
Q Consensus 711 l~s~--~---~~~~l~~h~~~V~sl~~spdg~~Lasgs--Dg~I~-IwDl~s~ 755 (837)
...+ + .....+.|.+-+..-.|.....+|++|+ |+.++ +|-.-++
T Consensus 283 ~~~~~~e~~~~~~s~~~hdSl~YG~DWd~~~~~lATCsFYDk~~~~~Wl~~t~ 335 (339)
T KOG0280|consen 283 SSDKVLEFQIVLPSDKIHDSLCYGGDWDSKDSFLATCSFYDKKIRQLWLHITG 335 (339)
T ss_pred ecccccchheeeeccccccceeeccccccccceeeeeeccccceeeeeeeccC
Confidence 6654 2 3445566777777778866667899988 87755 7755443
|
|
| >COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.21 E-value=2.5e-09 Score=116.87 Aligned_cols=271 Identities=18% Similarity=0.199 Sum_probs=187.9
Q ss_pred CCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCC--------------
Q 003236 554 STSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADR-------------- 619 (837)
Q Consensus 554 H~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg-------------- 619 (837)
-.-++..++|||.|.+|++.... .|.+|+...+..+..+. | ..|..+.|+|.++||.+=+..+
T Consensus 31 ~~~p~~~~~~SP~G~~l~~~~~~-~V~~~~g~~~~~l~~~~-~-~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~ 107 (561)
T COG5354 31 ENWPVAYVSESPLGTYLFSEHAA-GVECWGGPSKAKLVRFR-H-PDVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSK 107 (561)
T ss_pred cCcchhheeecCcchheehhhcc-ceEEccccchhheeeee-c-CCceecccCcccceeeeeccCCccChhhccCCcccc
Confidence 44568899999999999987654 58999988877665654 4 4599999999999999976533
Q ss_pred -eEEEEEcCCCCceeEEeeccccc--eE-EEEEcCCCCeEEEEEeCCCcEEEEECCCCeee-eEEec--CCCeeEEEEec
Q 003236 620 -TVRVWDTENPDYSLRTFTGHSTT--VM-SLDFHPSKEDLLCSCDNNSEIRYWSINNGSCA-GVFKC--QSGATQMRFQP 692 (837)
Q Consensus 620 -~I~IWDl~~~~~~~~~~~~h~~~--V~-sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i-~~~~~--~~~i~sl~~sp 692 (837)
.+.|||+.++.. +..+.....+ .+ -+.|+-++.+.+-. ....++|+++ ++... ..+.. ..++....|+|
T Consensus 108 n~~~vwd~~sg~i-v~sf~~~~q~~~~Wp~~k~s~~D~y~ARv--v~~sl~i~e~-t~n~~~~p~~~lr~~gi~dFsisP 183 (561)
T COG5354 108 NNVFVWDIASGMI-VFSFNGISQPYLGWPVLKFSIDDKYVARV--VGSSLYIHEI-TDNIEEHPFKNLRPVGILDFSISP 183 (561)
T ss_pred CceeEEeccCcee-EeeccccCCcccccceeeeeecchhhhhh--ccCeEEEEec-CCccccCchhhccccceeeEEecC
Confidence 499999998664 6666655544 44 67788776543333 2457999997 33221 11111 36788888998
Q ss_pred CCCE--EEEE-----EcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEe------------CCeEEEEEcC
Q 003236 693 RLGR--ILAA-----AIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS------------DELVRVWSIG 753 (837)
Q Consensus 693 ~g~~--llag-----s~dg~I~iwDl~s~~~~~~l~~h~~~V~sl~~spdg~~Lasgs------------Dg~I~IwDl~ 753 (837)
.++. |++- +..+.+++|.+..+..+....-....-..+.|.+.|++|++-- +..++|+++.
T Consensus 184 ~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~ 263 (561)
T COG5354 184 EGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRIT 263 (561)
T ss_pred CCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEEEecCCceEEEEEEEeeecccceeccceEEEEeec
Confidence 7433 3332 2357899999887665544332333345688999998776431 2468888887
Q ss_pred CCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEc--CCeEEEEECCCCcEEEeccCCCCeeEEEEeCCCCEEEEEECC-
Q 003236 754 SGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGC--YETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHD- 830 (837)
Q Consensus 754 s~~~~~~i~~~~~~~~~I~sv~fspdg~~L~sgs~--dg~I~IwDl~s~~~~~l~~h~~~V~sla~spdg~~LaSgs~D- 830 (837)
.. .+.......++|..++|.|.++.++++++ .-.+.++|++.+ +.+......=+.+.|+|.+++++.++-|
T Consensus 264 e~----~i~V~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N--l~~~~Pe~~rNT~~fsp~~r~il~agF~n 337 (561)
T COG5354 264 ER----SIPVEKDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN--LRFYFPEQKRNTIFFSPHERYILFAGFDN 337 (561)
T ss_pred cc----ccceeccccccceeeeecccCCceeEEecccccceeecccccc--eEEecCCcccccccccCcccEEEEecCCc
Confidence 43 22222255789999999999988887774 448999999887 5555566666778899999998888765
Q ss_pred --CcEEEeC
Q 003236 831 --KCVKIWK 837 (837)
Q Consensus 831 --G~I~IWd 837 (837)
|.|-|||
T Consensus 338 l~gni~i~~ 346 (561)
T COG5354 338 LQGNIEIFD 346 (561)
T ss_pred cccceEEec
Confidence 5677775
|
|
| >TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL | Back alignment and domain information |
|---|
Probab=99.19 E-value=1.7e-08 Score=113.91 Aligned_cols=252 Identities=13% Similarity=0.064 Sum_probs=161.1
Q ss_pred CCEEEEEECCCcEEEEeCCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeEEeeccccceEEE
Q 003236 567 GKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSL 646 (837)
Q Consensus 567 g~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~sl 646 (837)
+..+++++.++.|..+|..+++.+............+.. ++..+++++.++.|+.+|..+++... .... ...+.+.
T Consensus 65 ~~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~p~v--~~~~v~v~~~~g~l~ald~~tG~~~W-~~~~-~~~~~~~ 140 (377)
T TIGR03300 65 GGKVYAADADGTVVALDAETGKRLWRVDLDERLSGGVGA--DGGLVFVGTEKGEVIALDAEDGKELW-RAKL-SSEVLSP 140 (377)
T ss_pred CCEEEEECCCCeEEEEEccCCcEeeeecCCCCcccceEE--cCCEEEEEcCCCEEEEEECCCCcEee-eecc-CceeecC
Confidence 568888889999999999999988766544332223332 46788888999999999998877532 2221 1222221
Q ss_pred EEcCCCCeEEEEEeCCCcEEEEECCCCeeeeEEecCCCee------EEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEE
Q 003236 647 DFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGAT------QMRFQPRLGRILAAAIENYISILDVETQVCRLKL 720 (837)
Q Consensus 647 ~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~~~~i~------sl~~sp~g~~llags~dg~I~iwDl~s~~~~~~l 720 (837)
... .++. ++.+..++.|+.||.++++.+..+....... +..+. ++.++++..++.+..+|.++++.+...
T Consensus 141 p~v-~~~~-v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~--~~~v~~~~~~g~v~ald~~tG~~~W~~ 216 (377)
T TIGR03300 141 PLV-ANGL-VVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVIA--DGGVLVGFAGGKLVALDLQTGQPLWEQ 216 (377)
T ss_pred CEE-ECCE-EEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEEE--CCEEEEECCCCEEEEEEccCCCEeeee
Confidence 111 1233 4456678999999999999988876543321 11222 357788888899999999999877654
Q ss_pred cCCCC----C------E-EEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEc
Q 003236 721 QGHKN----Q------V-HSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGC 788 (837)
Q Consensus 721 ~~h~~----~------V-~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fspdg~~L~sgs~ 788 (837)
..... . + .+..+ .+..+++++ ++.++.||..++ +.+..... ....... ..+..|++++.
T Consensus 217 ~~~~~~g~~~~~~~~~~~~~p~~--~~~~vy~~~~~g~l~a~d~~tG---~~~W~~~~--~~~~~p~--~~~~~vyv~~~ 287 (377)
T TIGR03300 217 RVALPKGRTELERLVDVDGDPVV--DGGQVYAVSYQGRVAALDLRSG---RVLWKRDA--SSYQGPA--VDDNRLYVTDA 287 (377)
T ss_pred ccccCCCCCchhhhhccCCccEE--ECCEEEEEEcCCEEEEEECCCC---cEEEeecc--CCccCce--EeCCEEEEECC
Confidence 31100 0 1 01111 234555555 999999999887 34443331 1112222 34567888999
Q ss_pred CCeEEEEECCCCcEE-EeccC-CCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 003236 789 YETLELWNMTENKTL-TLSAH-DKLVSSLAASTVNGMVASASHDKCVKIWK 837 (837)
Q Consensus 789 dg~I~IwDl~s~~~~-~l~~h-~~~V~sla~spdg~~LaSgs~DG~I~IWd 837 (837)
++.|+.+|..+++.+ ..... ...+..... .+..|++++.||.|++||
T Consensus 288 ~G~l~~~d~~tG~~~W~~~~~~~~~~ssp~i--~g~~l~~~~~~G~l~~~d 336 (377)
T TIGR03300 288 DGVVVALDRRSGSELWKNDELKYRQLTAPAV--VGGYLVVGDFEGYLHWLS 336 (377)
T ss_pred CCeEEEEECCCCcEEEccccccCCccccCEE--ECCEEEEEeCCCEEEEEE
Confidence 999999999999876 22121 122233333 366888899999999875
|
Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ. |
| >PRK04043 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.18 E-value=1.9e-08 Score=114.55 Aligned_cols=228 Identities=12% Similarity=0.064 Sum_probs=150.6
Q ss_pred CcEEEEeCCCCeEEEEeccCCCCeEEEEEcCCCCE-EEEEeCC---CeEEEEEcCCCCceeEEeeccccceEEEEEcCCC
Q 003236 577 KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSR-LATSSAD---RTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSK 652 (837)
Q Consensus 577 g~I~VWd~~t~~~~~~l~~h~~~I~~l~fspdg~~-Latgs~D---g~I~IWDl~~~~~~~~~~~~h~~~V~sl~fspdg 652 (837)
..|.+-|.+......... .. .+...+|+|||+. ++..+.+ ..|+++|+.+++. ..+....+.+....|+|||
T Consensus 169 ~~l~~~d~dg~~~~~~~~-~~-~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~--~~lt~~~g~~~~~~~SPDG 244 (419)
T PRK04043 169 SNIVLADYTLTYQKVIVK-GG-LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKK--EKIASSQGMLVVSDVSKDG 244 (419)
T ss_pred ceEEEECCCCCceeEEcc-CC-CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcE--EEEecCCCcEEeeEECCCC
Confidence 356665655444333333 33 7889999999984 6654443 5689999987653 3333355566778899999
Q ss_pred CeEEEEEeCC--CcEEEEECCCCeeeeEEecCCCeeEEEEecCCCEEEEEEcC-C--eEEEEECCCCeEEEEEcCCCCCE
Q 003236 653 EDLLCSCDNN--SEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIE-N--YISILDVETQVCRLKLQGHKNQV 727 (837)
Q Consensus 653 ~~llasgs~D--g~I~vwDl~t~~~i~~~~~~~~i~sl~~sp~g~~llags~d-g--~I~iwDl~s~~~~~~l~~h~~~V 727 (837)
..++++.+.+ ..|+++|+.++................|+|||+.|+..+.. + .|+++|+.+++....... ...
T Consensus 245 ~~la~~~~~~g~~~Iy~~dl~~g~~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~-g~~- 322 (419)
T PRK04043 245 SKLLLTMAPKGQPDIYLYDTNTKTLTQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFH-GKN- 322 (419)
T ss_pred CEEEEEEccCCCcEEEEEECCCCcEEEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccC-CCc-
Confidence 9888777654 46888898887755444333334567899999988877753 2 688899988766433321 111
Q ss_pred EEEEEcCCCCEEEEEe-C-------C--eEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCC---eEEE
Q 003236 728 HSVCWNTSGEYLASVS-D-------E--LVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYE---TLEL 794 (837)
Q Consensus 728 ~sl~~spdg~~Lasgs-D-------g--~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fspdg~~L~sgs~dg---~I~I 794 (837)
...|+|||++|+... . + .|.+.|+.++.. ..+... .......|+|||+.|+....++ .|.+
T Consensus 323 -~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~----~~LT~~-~~~~~p~~SPDG~~I~f~~~~~~~~~L~~ 396 (419)
T PRK04043 323 -NSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYI----RRLTAN-GVNQFPRFSSDGGSIMFIKYLGNQSALGI 396 (419)
T ss_pred -CceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCe----EECCCC-CCcCCeEECCCCCEEEEEEccCCcEEEEE
Confidence 248999999988776 2 2 678888877632 222222 2233578999999888877544 5888
Q ss_pred EECCCCcEEEeccCCCCeeEEE
Q 003236 795 WNMTENKTLTLSAHDKLVSSLA 816 (837)
Q Consensus 795 wDl~s~~~~~l~~h~~~V~sla 816 (837)
+++.......+....+.|...+
T Consensus 397 ~~l~g~~~~~l~~~~g~~~~p~ 418 (419)
T PRK04043 397 IRLNYNKSFLFPLKVGKIQSID 418 (419)
T ss_pred EecCCCeeEEeecCCCccCCCC
Confidence 8888776666655555554433
|
|
| >KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.18 E-value=1.8e-10 Score=129.68 Aligned_cols=280 Identities=17% Similarity=0.288 Sum_probs=196.4
Q ss_pred CCCeEEEEEcCCCCEEEEEECCCcEEEEeCCC-CeEEEEecc-CCCCeEEEEEcCC--CCEEEEEeCCCeEEEEEcCCCC
Q 003236 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTES-FTVKSTLEE-HTQWITDVRFSPS--LSRLATSSADRTVRVWDTENPD 630 (837)
Q Consensus 555 ~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t-~~~~~~l~~-h~~~I~~l~fspd--g~~Latgs~Dg~I~IWDl~~~~ 630 (837)
.+.+..+.++|.|+-+|.++.-| +.+.|++. +....-+.. ..-.|-++.|++. -.+-++........||++....
T Consensus 24 ~~~~~a~si~p~grdi~lAsr~g-l~i~dld~p~~ppr~l~h~tpw~vad~qws~h~a~~~wiVsts~qkaiiwnlA~ss 102 (1081)
T KOG0309|consen 24 DGGFNAVSINPSGRDIVLASRQG-LYIIDLDDPFTPPRWLHHITPWQVADVQWSPHPAKPYWIVSTSNQKAIIWNLAKSS 102 (1081)
T ss_pred cCcccceeeccccchhhhhhhcC-eEEEeccCCCCCceeeeccCcchhcceecccCCCCceeEEecCcchhhhhhhhcCC
Confidence 34578899999999999998876 45666653 344333321 1234778888875 3344555555667789986433
Q ss_pred --ceeEEeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCe-eeeEEe-cCCCeeEEEEecCCCEEEEEEcCCeE
Q 003236 631 --YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS-CAGVFK-CQSGATQMRFQPRLGRILAAAIENYI 706 (837)
Q Consensus 631 --~~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~-~i~~~~-~~~~i~sl~~sp~g~~llags~dg~I 706 (837)
..-..+.+|...|+.+.|+|....++++|+.|-.|..||+++.. .+..+. -......+.|+.....+++.+..+.|
T Consensus 103 ~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~vlasshg~~i 182 (1081)
T KOG0309|consen 103 SNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPNVLASSHGNDI 182 (1081)
T ss_pred ccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccccCceeeecccCcchhhhccCCce
Confidence 23356678999999999999999999999999999999999754 333333 25778899999988899999999999
Q ss_pred EEEECCCC-eEEEEEcCCCCCEEEEEEcCC--CCEEEEEeCCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEE
Q 003236 707 SILDVETQ-VCRLKLQGHKNQVHSVCWNTS--GEYLASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSL 783 (837)
Q Consensus 707 ~iwDl~s~-~~~~~l~~h~~~V~sl~~spd--g~~LasgsDg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fspdg~~L 783 (837)
.+||++.+ .++..+++|...|+.++|..- +..+.+..|++|+.||...... .-........+|..-.+.|-|.-.
T Consensus 183 ~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~--e~~~~vtt~~piw~~r~~Pfg~g~ 260 (1081)
T KOG0309|consen 183 FVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTT--ESKRTVTTNFPIWRGRYLPFGEGY 260 (1081)
T ss_pred EEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeeccccccc--ccceeccccCcceeccccccCcee
Confidence 99999986 788889999999999998753 3334444499999999876432 112222345667777777765433
Q ss_pred EEE--EcCCeEEEEE---------CCCCc-EE-EeccCCCCeeEEEEeCCC----------CEEEEEECCCcEEEeC
Q 003236 784 LVI--GCYETLELWN---------MTENK-TL-TLSAHDKLVSSLAASTVN----------GMVASASHDKCVKIWK 837 (837)
Q Consensus 784 ~sg--s~dg~I~IwD---------l~s~~-~~-~l~~h~~~V~sla~spdg----------~~LaSgs~DG~I~IWd 837 (837)
++- -++..|.+++ +.++. .+ ++.+|.+.|...-|-..+ -.|+|-+.|..+++|-
T Consensus 261 ~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lrlWp 337 (1081)
T KOG0309|consen 261 CIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQTLRLWP 337 (1081)
T ss_pred EeccccCCeeeeeccccchhhhhccccCCcceeeecCcchHHHHHhhhhcccccCCCCccceeEEEeecCCceEeee
Confidence 322 1222344443 33322 22 788999988877664322 2799999999999993
|
|
| >COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown] | Back alignment and domain information |
|---|
Probab=99.18 E-value=2.6e-08 Score=107.93 Aligned_cols=281 Identities=12% Similarity=0.087 Sum_probs=187.8
Q ss_pred ccccccCC-CeeeeEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCC-CCeEEEEeccCCCC--eEEEEEcCCC
Q 003236 534 GRSAEVGK-GFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTE-SFTVKSTLEEHTQW--ITDVRFSPSL 609 (837)
Q Consensus 534 ~~~~~~~~-g~~~~~~~~l~~H~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~-t~~~~~~l~~h~~~--I~~l~fspdg 609 (837)
+.+|-... +.+|+.+..+.+|- +|-.+-. ++..+....||.=.||.++ .|+-+ +.|++. -.+=..+.||
T Consensus 206 GklWis~d~g~tFeK~vdl~~~v---S~PmIV~-~RvYFlsD~eG~GnlYSvdldGkDl---rrHTnFtdYY~R~~nsDG 278 (668)
T COG4946 206 GKLWISSDGGKTFEKFVDLDGNV---SSPMIVG-ERVYFLSDHEGVGNLYSVDLDGKDL---RRHTNFTDYYPRNANSDG 278 (668)
T ss_pred ceEEEEecCCcceeeeeecCCCc---CCceEEc-ceEEEEecccCccceEEeccCCchh---hhcCCchhccccccCCCC
Confidence 44454444 44888888888874 3333332 3334445566665666443 22222 223321 2233345688
Q ss_pred CEEEEEeCCCeEEEEEcCCCCceeEEee-c---------cccceEEEE-EcCCCCeEEEEEeCCCcEEEEECCCCeeeeE
Q 003236 610 SRLATSSADRTVRVWDTENPDYSLRTFT-G---------HSTTVMSLD-FHPSKEDLLCSCDNNSEIRYWSINNGSCAGV 678 (837)
Q Consensus 610 ~~Latgs~Dg~I~IWDl~~~~~~~~~~~-~---------h~~~V~sl~-fspdg~~llasgs~Dg~I~vwDl~t~~~i~~ 678 (837)
+.++.. ..|.|++||.++.......+. . ...+..-+. |++-...+++..+ .|...+.+...+-.+.
T Consensus 279 krIvFq-~~GdIylydP~td~lekldI~lpl~rk~k~~k~~~pskyledfa~~~Gd~ia~VS-RGkaFi~~~~~~~~iq- 355 (668)
T COG4946 279 KRIVFQ-NAGDIYLYDPETDSLEKLDIGLPLDRKKKQPKFVNPSKYLEDFAVVNGDYIALVS-RGKAFIMRPWDGYSIQ- 355 (668)
T ss_pred cEEEEe-cCCcEEEeCCCcCcceeeecCCccccccccccccCHHHhhhhhccCCCcEEEEEe-cCcEEEECCCCCeeEE-
Confidence 887765 567899999987653222111 0 001111121 4443444665665 5778887776554443
Q ss_pred EecCCCeeEEEEecCCCEEEEEEcCC-eEEEEECCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCC
Q 003236 679 FKCQSGATQMRFQPRLGRILAAAIEN-YISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGS 756 (837)
Q Consensus 679 ~~~~~~i~sl~~sp~g~~llags~dg-~I~iwDl~s~~~~~~l~~h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~ 756 (837)
+....+|.-..+..+.+.++.|..|| .+-|||.++++... +...-+.|.++..+++|++++++. ...|-++|+.++.
T Consensus 356 v~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~kr-~e~~lg~I~av~vs~dGK~~vvaNdr~el~vididngn 434 (668)
T COG4946 356 VGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVKR-IEKDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGN 434 (668)
T ss_pred cCCCCceEEEEEccCCcceEEeccCCceEEEEecCCceEEE-eeCCccceEEEEEcCCCcEEEEEcCceEEEEEEecCCC
Confidence 33446688888888888899999998 89999999886544 444668899999999999999998 5589999999983
Q ss_pred CceeEEEeecCCCceEEEEEeCCCCEEEEEEcCC----eEEEEECCCCcEEEeccCCCCeeEEEEeCCCCEEEEEE
Q 003236 757 KGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYE----TLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASAS 828 (837)
Q Consensus 757 ~~~~i~~~~~~~~~I~sv~fspdg~~L~sgs~dg----~I~IwDl~s~~~~~l~~h~~~V~sla~spdg~~LaSgs 828 (837)
....-....+-|+.++|||++++|+.+--+| .|++||+.+++........+.=.+-+|.||+++|..-+
T Consensus 435 ---v~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vTT~ta~DfsPaFD~d~ryLYfLs 507 (668)
T COG4946 435 ---VRLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVTTPTAYDFSPAFDPDGRYLYFLS 507 (668)
T ss_pred ---eeEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEEEecCCcccccCcccCCCCcEEEEEe
Confidence 3323334467799999999999999987776 79999999999987666666667789999999877654
|
|
| >KOG4547 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.16 E-value=3.2e-09 Score=118.33 Aligned_cols=188 Identities=19% Similarity=0.309 Sum_probs=149.6
Q ss_pred CCCCEEEEEeCCCeEEEEEcCCCCceeEEee---ccccceEEEEE------cC-------------CCCeEEEEEeCCCc
Q 003236 607 PSLSRLATSSADRTVRVWDTENPDYSLRTFT---GHSTTVMSLDF------HP-------------SKEDLLCSCDNNSE 664 (837)
Q Consensus 607 pdg~~Latgs~Dg~I~IWDl~~~~~~~~~~~---~h~~~V~sl~f------sp-------------dg~~llasgs~Dg~ 664 (837)
|...++|....||.++|||...+.. ...+. .-++..++..| +| .+..+++-|...|.
T Consensus 3 ~~~~~~A~~~~~g~l~iw~t~~~~~-~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~ 81 (541)
T KOG4547|consen 3 PALDYFALSTGDGRLRIWDTAKNQL-QQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGS 81 (541)
T ss_pred chhheEeecCCCCeEEEEEccCcee-eeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCcc
Confidence 4467899999999999999997663 22221 11233344444 22 12456777888999
Q ss_pred EEEEECCCCeeeeEEe---cCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEcCCCCEEEE
Q 003236 665 IRYWSINNGSCAGVFK---CQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLAS 741 (837)
Q Consensus 665 I~vwDl~t~~~i~~~~---~~~~i~sl~~sp~g~~llags~dg~I~iwDl~s~~~~~~l~~h~~~V~sl~~spdg~~Las 741 (837)
|.+|++..++....+. +.+.|.++.++.+-..|.+++.|..+..|+......+..+......+.+++.+||+..+++
T Consensus 82 v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~D~~~l~~ 161 (541)
T KOG4547|consen 82 VLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCISPDGKILLT 161 (541)
T ss_pred EEEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccCCCccceEEEcCCCCEEEe
Confidence 9999999999998887 3567899999999999999999999999999999999999999999999999999998887
Q ss_pred EeCCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCC-----CCEEEEEEc-CCeEEEEECCC
Q 003236 742 VSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPT-----FPSLLVIGC-YETLELWNMTE 799 (837)
Q Consensus 742 gsDg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fspd-----g~~L~sgs~-dg~I~IwDl~s 799 (837)
++ +.|++||+.+. +.+..|.+|.++|.++.|... |.+++++.. +..+.+|-+..
T Consensus 162 as-~~ik~~~~~~k---evv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 162 AS-RQIKVLDIETK---EVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK 221 (541)
T ss_pred cc-ceEEEEEccCc---eEEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence 64 67999999998 899999999999999999877 666665544 44566665543
|
|
| >KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown] | Back alignment and domain information |
|---|
Probab=99.15 E-value=1.9e-09 Score=112.81 Aligned_cols=279 Identities=15% Similarity=0.223 Sum_probs=184.9
Q ss_pred ccCCCeEEcccCCCceEEeecCCCCCCCCccccccccCCCeeeeEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEE
Q 003236 503 TDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLW 582 (837)
Q Consensus 503 ~~~~~~v~~Gs~D~~v~~w~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~H~~~V~sl~fSpdg~~Lasgs~Dg~I~VW 582 (837)
.+.+.=+.+.+.|.++++|+-.+...- +..+ ...-..+++++.+.++...|++|-..|++.-+
T Consensus 33 ~~~e~gv~~~s~drtvrv~lkrds~q~---------------wpsI--~~~mP~~~~~~~y~~e~~~L~vg~~ngtvtef 95 (404)
T KOG1409|consen 33 IPKEEGVISVSEDRTVRVWLKRDSGQY---------------WPSI--YHYMPSPCSAMEYVSESRRLYVGQDNGTVTEF 95 (404)
T ss_pred ccCCCCeEEccccceeeeEEecccccc---------------Cchh--hhhCCCCceEeeeeccceEEEEEEecceEEEE
Confidence 344455677899999999977665321 1111 12345679999999999999999999999988
Q ss_pred eCC----CCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcC-------------------------------
Q 003236 583 CTE----SFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTE------------------------------- 627 (837)
Q Consensus 583 d~~----t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~------------------------------- 627 (837)
.+. .....+....|...|..+.|+-..+.+++.+.|..+.---.+
T Consensus 96 s~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~~~t~~~~d~~~~fvGd~~g 175 (404)
T KOG1409|consen 96 ALSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYNFETPASALQFDALYAFVGDHSG 175 (404)
T ss_pred EhhhhhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCcccceEeeccCCCCceeeEEEEeccccc
Confidence 653 344555666788888888888777777777766433211111
Q ss_pred ---------CCCceeEEeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCC--CeeeeEEecCCCeeEEEEecCCCE
Q 003236 628 ---------NPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN--GSCAGVFKCQSGATQMRFQPRLGR 696 (837)
Q Consensus 628 ---------~~~~~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t--~~~i~~~~~~~~i~sl~~sp~g~~ 696 (837)
+.-..+..+.+|.+.+.+++|.+.. .++.+|..|..|.+||+.- +.....+.+...|..+.+.+--..
T Consensus 176 qvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~-~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~~~~t~~ 254 (404)
T KOG1409|consen 176 QITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQ-RLLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQALSYAQHTRQ 254 (404)
T ss_pred ceEEEEEeecCCceEEEEcCcccceEEEEEcCCC-cEEEeccccCceEEEeccCCcceeeeeccchhhhhhhhhhhhhee
Confidence 0012356778899999999999985 4777999999999999964 444445556677888888777788
Q ss_pred EEEEEcCCeEEEEECCCCeEEEE-E----------------------------cCC-----CCCEEEEEEcCCCCEEEEE
Q 003236 697 ILAAAIENYISILDVETQVCRLK-L----------------------------QGH-----KNQVHSVCWNTSGEYLASV 742 (837)
Q Consensus 697 llags~dg~I~iwDl~s~~~~~~-l----------------------------~~h-----~~~V~sl~~spdg~~Lasg 742 (837)
+++++.||.|.+||.+....... + .-| ...|...+-+....+...+
T Consensus 255 l~S~~edg~i~~w~mn~~r~etpewl~s~~cQ~c~qpffwn~~~m~~~k~~glr~h~crkcg~avc~~c~s~~~~~p~mg 334 (404)
T KOG1409|consen 255 LISCGEDGGIVVWNMNVKRVETPEWLDSDSCQKCNQPFFWNFRQMWDRKQLGLRQHHCRKCGKAVCGKCSSNRSSYPTMG 334 (404)
T ss_pred eeeccCCCeEEEEeccceeecCccccccchhhhhCchHHHHHHHHHhhhhhhhhhhhhhhhhhhcCcccccCcccccccc
Confidence 99999999999999875432110 0 000 1122222222222222223
Q ss_pred eCCeEEEEEcCCC----CCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCC
Q 003236 743 SDELVRVWSIGSG----SKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTE 799 (837)
Q Consensus 743 sDg~I~IwDl~s~----~~~~~i~~~~~~~~~I~sv~fspdg~~L~sgs~dg~I~IwDl~s 799 (837)
..-.+|+.|.-.. .....+..+......|+.+.+...-..|+++|.|..|+|||++.
T Consensus 335 ~e~~vR~~~~c~~~i~~~~~t~LA~phei~tgItamhlqetlglLvTsG~~Rvi~iwd~~~ 395 (404)
T KOG1409|consen 335 FEFSVRVCDSCYPTIKDEERTPLAIPHEIKTGITAMHLQETLGLLVTSGTDRVIKIWDVRS 395 (404)
T ss_pred ceeEEEEecccchhhhcCCCCccccccccccceeEEEhhhhccceeecCCceEEEEEechh
Confidence 3335555543211 00122334444456788899988888999999999999999864
|
|
| >PLN02919 haloacid dehalogenase-like hydrolase family protein | Back alignment and domain information |
|---|
Probab=99.15 E-value=3.6e-08 Score=123.87 Aligned_cols=237 Identities=13% Similarity=0.154 Sum_probs=161.4
Q ss_pred EEEEEcCC-CCEEEEEECCCcEEEEeCCCCeEEEEecc-C-------------CCCeEEEEEcCCCCEEEEEeC-CCeEE
Q 003236 559 ESCHFSPD-GKLLATGGHDKKAVLWCTESFTVKSTLEE-H-------------TQWITDVRFSPSLSRLATSSA-DRTVR 622 (837)
Q Consensus 559 ~sl~fSpd-g~~Lasgs~Dg~I~VWd~~t~~~~~~l~~-h-------------~~~I~~l~fspdg~~Latgs~-Dg~I~ 622 (837)
..++++++ +.++++-+.++.|++||... ..+..+.. . -.....|++++++..|+++.. .+.|+
T Consensus 571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~G-~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~Ir 649 (1057)
T PLN02919 571 GKLAIDLLNNRLFISDSNHNRIVVTDLDG-NFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHALR 649 (1057)
T ss_pred ceEEEECCCCeEEEEECCCCeEEEEeCCC-CEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCceEE
Confidence 35788874 66777777788999999764 44444322 1 123578999998887666654 57899
Q ss_pred EEEcCCCCceeEEeecc-----------------ccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeeEEec----
Q 003236 623 VWDTENPDYSLRTFTGH-----------------STTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC---- 681 (837)
Q Consensus 623 IWDl~~~~~~~~~~~~h-----------------~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~---- 681 (837)
++|+.++. +.++.+. -.....++|+|++..++++...++.|++||..++........
T Consensus 650 ~id~~~~~--V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~~~G~G~~~ 727 (1057)
T PLN02919 650 EIDFVNET--VRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRVFSGDGYER 727 (1057)
T ss_pred EEecCCCE--EEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEEEEecCCccc
Confidence 99987644 3333211 123468999997777888888889999999987754321110
Q ss_pred -----------CCCeeEEEEecCCCEEEEEEc-CCeEEEEECCCCeEEEEEcC-------------C--------CCCEE
Q 003236 682 -----------QSGATQMRFQPRLGRILAAAI-ENYISILDVETQVCRLKLQG-------------H--------KNQVH 728 (837)
Q Consensus 682 -----------~~~i~sl~~sp~g~~llags~-dg~I~iwDl~s~~~~~~l~~-------------h--------~~~V~ 728 (837)
-.....++++|+++.++++.. ++.|++||+.++.......+ + -....
T Consensus 728 ~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~ 807 (1057)
T PLN02919 728 NLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPL 807 (1057)
T ss_pred cCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCc
Confidence 123456999999986665554 68999999987643211100 0 11346
Q ss_pred EEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeec--------------CCCceEEEEEeCCCCEEEEEEcCCeEE
Q 003236 729 SVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSC--------------TGNKFHSCVFHPTFPSLLVIGCYETLE 793 (837)
Q Consensus 729 sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~--------------~~~~I~sv~fspdg~~L~sgs~dg~I~ 793 (837)
+++++++|.++++.. ++.|++||..++. .. .+.+ .-.....++++++|+.+++-+.++.|+
T Consensus 808 Gvavd~dG~LYVADs~N~rIrviD~~tg~---v~-tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Ir 883 (1057)
T PLN02919 808 GVLCAKDGQIYVADSYNHKIKKLDPATKR---VT-TLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIR 883 (1057)
T ss_pred eeeEeCCCcEEEEECCCCEEEEEECCCCe---EE-EEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEE
Confidence 889999998777766 8899999998762 22 1111 113567899999998777777788999
Q ss_pred EEECCCCcE
Q 003236 794 LWNMTENKT 802 (837)
Q Consensus 794 IwDl~s~~~ 802 (837)
+||+.+++.
T Consensus 884 vid~~~~~~ 892 (1057)
T PLN02919 884 YLDLNKGEA 892 (1057)
T ss_pred EEECCCCcc
Confidence 999988764
|
|
| >KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.15 E-value=3.9e-09 Score=110.32 Aligned_cols=239 Identities=17% Similarity=0.292 Sum_probs=166.2
Q ss_pred cccCCCeEEcccCCCceEEeecCCCCCCCCccccccccCCCeeeeEEEEecCCC------------CCeEEEEEcCCCC-
Q 003236 502 LTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPAST------------SKVESCHFSPDGK- 568 (837)
Q Consensus 502 l~~~~~~v~~Gs~D~~v~~w~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~H~------------~~V~sl~fSpdg~- 568 (837)
++-...++++|..+|-|.+|.-..... + .+.....+..|. .+|..+.|.+++.
T Consensus 33 f~~~Ge~LatGdkgGRVv~f~r~~~~~-------------~-ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~ 98 (433)
T KOG1354|consen 33 FDHYGERLATGDKGGRVVLFEREKLYK-------------G-EYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNL 98 (433)
T ss_pred eecccceEeecCCCCeEEEeecccccc-------------c-ceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCc
Confidence 344557899999999999994433322 1 222223333333 4688999998765
Q ss_pred -EEEEEECCCcEEEEeCCCCeEE-----------------------------------EEe-ccCCCCeEEEEEcCCCCE
Q 003236 569 -LLATGGHDKKAVLWCTESFTVK-----------------------------------STL-EEHTQWITDVRFSPSLSR 611 (837)
Q Consensus 569 -~Lasgs~Dg~I~VWd~~t~~~~-----------------------------------~~l-~~h~~~I~~l~fspdg~~ 611 (837)
.++..+.|++|++|.+...... +.+ ..|+.-|++|.++.|...
T Consensus 99 a~FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et 178 (433)
T KOG1354|consen 99 AEFLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKET 178 (433)
T ss_pred cEEEEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccce
Confidence 5677788999999975421110 111 258888999999999988
Q ss_pred EEEEeCCCeEEEEEcCCCCce--eEEeecc-----ccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeee----eEEe
Q 003236 612 LATSSADRTVRVWDTENPDYS--LRTFTGH-----STTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCA----GVFK 680 (837)
Q Consensus 612 Latgs~Dg~I~IWDl~~~~~~--~~~~~~h-----~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i----~~~~ 680 (837)
++++ .|=.|-+|+++-.... +.-++.+ +..|++..|+|....+++-.+..|+|++.|++..... ..+.
T Consensus 179 ~lSA-DdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfE 257 (433)
T KOG1354|consen 179 FLSA-DDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFE 257 (433)
T ss_pred Eeec-cceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhc
Confidence 8887 5778999998754332 2223333 3578999999988888888888999999999843211 1111
Q ss_pred c-------------CCCeeEEEEecCCCEEEEEEcCCeEEEEECC-CCeEEEEEcCCCC------------CE---EEEE
Q 003236 681 C-------------QSGATQMRFQPRLGRILAAAIENYISILDVE-TQVCRLKLQGHKN------------QV---HSVC 731 (837)
Q Consensus 681 ~-------------~~~i~sl~~sp~g~~llags~dg~I~iwDl~-s~~~~~~l~~h~~------------~V---~sl~ 731 (837)
. -..|..+.|++.|+++++-.. -+|++||+. ..+++.++.-|.. .| ..++
T Consensus 258 epedp~~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~ 336 (433)
T KOG1354|consen 258 EPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFECS 336 (433)
T ss_pred cccCCcchhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEeccccCCcceEEeehHhHHHHHHHHhhccchhheeEEE
Confidence 1 234788999999988876543 789999994 4567766665532 22 3578
Q ss_pred EcCCCCEEEEEe-CCeEEEEEcCCCC
Q 003236 732 WNTSGEYLASVS-DELVRVWSIGSGS 756 (837)
Q Consensus 732 ~spdg~~Lasgs-Dg~I~IwDl~s~~ 756 (837)
|+.++.++.+|+ .+.+++|++..+.
T Consensus 337 ~sg~~~~v~TGsy~n~frvf~~~~gs 362 (433)
T KOG1354|consen 337 WSGNDSYVMTGSYNNVFRVFNLARGS 362 (433)
T ss_pred EcCCcceEecccccceEEEecCCCCc
Confidence 999999999999 8899999976553
|
|
| >PLN02919 haloacid dehalogenase-like hydrolase family protein | Back alignment and domain information |
|---|
Probab=99.12 E-value=3.8e-08 Score=123.63 Aligned_cols=233 Identities=11% Similarity=0.115 Sum_probs=157.1
Q ss_pred EEEEEcCC-CCEEEEEeCCCeEEEEEcCCCCceeEEeec--c------------ccceEEEEEcCCCCeEEEEEeCCCcE
Q 003236 601 TDVRFSPS-LSRLATSSADRTVRVWDTENPDYSLRTFTG--H------------STTVMSLDFHPSKEDLLCSCDNNSEI 665 (837)
Q Consensus 601 ~~l~fspd-g~~Latgs~Dg~I~IWDl~~~~~~~~~~~~--h------------~~~V~sl~fspdg~~llasgs~Dg~I 665 (837)
..++++++ +.++++-+.++.|++||... .. +..+.+ . -.....++++++++.++++-..++.|
T Consensus 571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~G-~~-i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~I 648 (1057)
T PLN02919 571 GKLAIDLLNNRLFISDSNHNRIVVTDLDG-NF-IVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHAL 648 (1057)
T ss_pred ceEEEECCCCeEEEEECCCCeEEEEeCCC-CE-EEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCceE
Confidence 46788874 55666767788999999864 32 222221 1 12357899999877666665566789
Q ss_pred EEEECCCCeeeeEEec-----------------CCCeeEEEEecCCCEE-EEEEcCCeEEEEECCCCeEEEEEcCC----
Q 003236 666 RYWSINNGSCAGVFKC-----------------QSGATQMRFQPRLGRI-LAAAIENYISILDVETQVCRLKLQGH---- 723 (837)
Q Consensus 666 ~vwDl~t~~~i~~~~~-----------------~~~i~sl~~sp~g~~l-lags~dg~I~iwDl~s~~~~~~l~~h---- 723 (837)
+++|+.++........ -.....++++|+++.+ ++...++.|++||..++.... +.+.
T Consensus 649 r~id~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~-~~G~G~~~ 727 (1057)
T PLN02919 649 REIDFVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRV-FSGDGYER 727 (1057)
T ss_pred EEEecCCCEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEEE-EecCCccc
Confidence 9999987654322110 1124578999955555 455567899999998775432 2111
Q ss_pred -----------CCCEEEEEEcCCCCEEEEEe--CCeEEEEEcCCCCCceeEE-----------Eeec--------CCCce
Q 003236 724 -----------KNQVHSVCWNTSGEYLASVS--DELVRVWSIGSGSKGECIH-----------ELSC--------TGNKF 771 (837)
Q Consensus 724 -----------~~~V~sl~~spdg~~Lasgs--Dg~I~IwDl~s~~~~~~i~-----------~~~~--------~~~~I 771 (837)
-.....|+|+|++..|+++. ++.|++||+.++.. ..+. .+.. .....
T Consensus 728 ~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~-~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P 806 (1057)
T PLN02919 728 NLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGS-RLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHP 806 (1057)
T ss_pred cCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcE-EEEEecccccCcccccccCCCCchhhhhccCC
Confidence 12456799999998666555 78999999987532 1110 0000 01124
Q ss_pred EEEEEeCCCCEEEEEEcCCeEEEEECCCCcEEEeccC--------------CCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 003236 772 HSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSAH--------------DKLVSSLAASTVNGMVASASHDKCVKIWK 837 (837)
Q Consensus 772 ~sv~fspdg~~L~sgs~dg~I~IwDl~s~~~~~l~~h--------------~~~V~sla~spdg~~LaSgs~DG~I~IWd 837 (837)
..++++++|..+++-..++.|++||..++.+..+.+. -.....|+++++|+++++-+.++.|++||
T Consensus 807 ~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid 886 (1057)
T PLN02919 807 LGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLD 886 (1057)
T ss_pred ceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEE
Confidence 6889999998777777788999999998877644332 23578899999999988888999999996
|
|
| >COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.12 E-value=1.9e-09 Score=111.10 Aligned_cols=239 Identities=17% Similarity=0.318 Sum_probs=163.7
Q ss_pred CCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCe-----EEEEeccCC------------CCeEEEEEcCCC--CEEEE
Q 003236 554 STSKVESCHFSPDGKLLATGGHDKKAVLWCTESFT-----VKSTLEEHT------------QWITDVRFSPSL--SRLAT 614 (837)
Q Consensus 554 H~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~-----~~~~l~~h~------------~~I~~l~fspdg--~~Lat 614 (837)
..+.|++|.|...|.||++|...|.|.+|.-+... ....+.+|. ..|..|.|..++ ..++.
T Consensus 25 ead~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLl 104 (460)
T COG5170 25 EADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLL 104 (460)
T ss_pred ccceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEE
Confidence 34569999999999999999999999999755322 222344443 357888887753 35777
Q ss_pred EeCCCeEEEEEcCCCC-----------------------------------------ceeEEe-eccccceEEEEEcCCC
Q 003236 615 SSADRTVRVWDTENPD-----------------------------------------YSLRTF-TGHSTTVMSLDFHPSK 652 (837)
Q Consensus 615 gs~Dg~I~IWDl~~~~-----------------------------------------~~~~~~-~~h~~~V~sl~fspdg 652 (837)
.+.|++|++|.+.... .+.+.+ ..|...|.++.|..|.
T Consensus 105 stNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~ 184 (460)
T COG5170 105 STNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSDK 184 (460)
T ss_pred ecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCch
Confidence 7799999999876431 001122 4577789999999887
Q ss_pred CeEEEEEeCCCcEEEEECCCCeeee-EEe--c------CCCeeEEEEecCC-CEEEEEEcCCeEEEEECCCCe------E
Q 003236 653 EDLLCSCDNNSEIRYWSINNGSCAG-VFK--C------QSGATQMRFQPRL-GRILAAAIENYISILDVETQV------C 716 (837)
Q Consensus 653 ~~llasgs~Dg~I~vwDl~t~~~i~-~~~--~------~~~i~sl~~sp~g-~~llags~dg~I~iwDl~s~~------~ 716 (837)
..++ ++ .|-.|.+|++..-.-.. ... . ..-|++..|+|.. ..+...+..|.|++.|++... .
T Consensus 185 et~l-Sa-DdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~k 262 (460)
T COG5170 185 ETLL-SA-DDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSKK 262 (460)
T ss_pred heee-ec-cceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCchh
Confidence 7555 44 47889999987533221 111 1 1237888999964 456677778999999998421 1
Q ss_pred EEE----------EcCCCCCEEEEEEcCCCCEEEEEeCCeEEEEEcCCCCCceeEEEeecCC------------Cc---e
Q 003236 717 RLK----------LQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCTG------------NK---F 771 (837)
Q Consensus 717 ~~~----------l~~h~~~V~sl~~spdg~~LasgsDg~I~IwDl~s~~~~~~i~~~~~~~------------~~---I 771 (837)
+.. +.+-...|..+.|+++|+||++-+--+|+|||++... .++.++.-|. .. -
T Consensus 263 lfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdyltvkiwDvnm~k--~pikTi~~h~~l~~~l~d~YEnDaifdk 340 (460)
T COG5170 263 LFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDYLTVKIWDVNMAK--NPIKTIPMHCDLMDELNDVYENDAIFDK 340 (460)
T ss_pred hhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEeccceEEEEeccccc--CCceeechHHHHHHHHHhhhhccceeee
Confidence 111 1122356888999999999998888899999998764 4555553331 11 2
Q ss_pred EEEEEeCCCCEEEEEEcCCeEEEEE
Q 003236 772 HSCVFHPTFPSLLVIGCYETLELWN 796 (837)
Q Consensus 772 ~sv~fspdg~~L~sgs~dg~I~IwD 796 (837)
..|.|+.|...+++|+..+..-||-
T Consensus 341 FeisfSgd~~~v~sgsy~NNfgiyp 365 (460)
T COG5170 341 FEISFSGDDKHVLSGSYSNNFGIYP 365 (460)
T ss_pred EEEEecCCcccccccccccceeeec
Confidence 4578888888888888777666665
|
|
| >PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [] | Back alignment and domain information |
|---|
Probab=99.08 E-value=1.1e-07 Score=117.43 Aligned_cols=282 Identities=15% Similarity=0.214 Sum_probs=185.0
Q ss_pred CCCCCeEEEEEcCCCCEEEEEECCCcEEEE----eCCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcC-
Q 003236 553 ASTSKVESCHFSPDGKLLATGGHDKKAVLW----CTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTE- 627 (837)
Q Consensus 553 ~H~~~V~sl~fSpdg~~Lasgs~Dg~I~VW----d~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~- 627 (837)
...+.|.++.|-++..-|+.+..+|.|.++ +..+.. +.....-...|.+++||||+..|+..+.+++|.+-+-.
T Consensus 73 ~~~~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~~-~E~VG~vd~GI~a~~WSPD~Ella~vT~~~~l~~mt~~f 151 (928)
T PF04762_consen 73 DPNDKIVSFQYLADSESLCIALASGDIILVREDPDPDEDE-IEIVGSVDSGILAASWSPDEELLALVTGEGNLLLMTRDF 151 (928)
T ss_pred CCCCcEEEEEeccCCCcEEEEECCceEEEEEccCCCCCce-eEEEEEEcCcEEEEEECCCcCEEEEEeCCCEEEEEeccc
Confidence 345789999999999999999999999999 544432 22333456789999999999999999999988876422
Q ss_pred ---------C---CC-cee--------EEeec------------------------cccceEEEEEcCCCCeEEEEEe--
Q 003236 628 ---------N---PD-YSL--------RTFTG------------------------HSTTVMSLDFHPSKEDLLCSCD-- 660 (837)
Q Consensus 628 ---------~---~~-~~~--------~~~~~------------------------h~~~V~sl~fspdg~~llasgs-- 660 (837)
. +. ..+ ..|.| +...-..|+|-.||.+++++.-
T Consensus 152 d~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRGDG~yFAVss~~~ 231 (928)
T PF04762_consen 152 DPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRGDGEYFAVSSVEP 231 (928)
T ss_pred eEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccccCCCceEEEECCCCcEEEEEEEEc
Confidence 0 00 000 00000 2334567889999987666553
Q ss_pred C---CCcEEEEECCCCeeeeEEec-CCCeeEEEEecCCCEEEEEEc---CCeEEEEECCC---CeEEEEEcCCCCCEEEE
Q 003236 661 N---NSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAI---ENYISILDVET---QVCRLKLQGHKNQVHSV 730 (837)
Q Consensus 661 ~---Dg~I~vwDl~t~~~i~~~~~-~~~i~sl~~sp~g~~llags~---dg~I~iwDl~s---~~~~~~l~~h~~~V~sl 730 (837)
. -..|+||+-+ |....+... .+--.+++|.|.|+.|++.-. ...|.+|+-+. ++....+......|..+
T Consensus 232 ~~~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfErNGLrhgeF~l~~~~~~~~v~~l 310 (928)
T PF04762_consen 232 ETGSRRVIRVYSRE-GELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFERNGLRHGEFTLRFDPEEEKVIEL 310 (928)
T ss_pred CCCceeEEEEECCC-ceEEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEecCCcEeeeEecCCCCCCceeeEE
Confidence 2 2578999876 554444332 233467899999998888765 24566666432 22222222345689999
Q ss_pred EEcCCCCEEEEEeCCeEEEEEcCCCCCceeEEEeecC-CCceEEEEEeCCCCE-EEEEEcCCeEEEEEC----CCC----
Q 003236 731 CWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCT-GNKFHSCVFHPTFPS-LLVIGCYETLELWNM----TEN---- 800 (837)
Q Consensus 731 ~~spdg~~LasgsDg~I~IwDl~s~~~~~~i~~~~~~-~~~I~sv~fspdg~~-L~sgs~dg~I~IwDl----~s~---- 800 (837)
.|++|+..|++.-.+.|.+|-..+.. .....++... ...+..+.|+|.... |.+.+.++.+..+++ ..+
T Consensus 311 ~Wn~ds~iLAv~~~~~vqLWt~~NYH-WYLKqei~~~~~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~~~v~~s~~~~ 389 (928)
T PF04762_consen 311 AWNSDSEILAVWLEDRVQLWTRSNYH-WYLKQEIRFSSSESVNFVKWDPEKPLRLHVLTSNGQYEIYDFAWDVSRSPGSS 389 (928)
T ss_pred EECCCCCEEEEEecCCceEEEeeCCE-EEEEEEEEccCCCCCCceEECCCCCCEEEEEecCCcEEEEEEEEEEEecCCCC
Confidence 99999999999876669999887642 1222333322 233455889986543 555555455544332 111
Q ss_pred ------------cEE----------------EeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 003236 801 ------------KTL----------------TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 837 (837)
Q Consensus 801 ------------~~~----------------~l~~h~~~V~sla~spdg~~LaSgs~DG~I~IWd 837 (837)
..+ ........|.+++|++++..+|+-..||.|.+|+
T Consensus 390 ~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~~~~~v~~vaf~~~~~~~avl~~d~~l~~~~ 454 (928)
T PF04762_consen 390 PNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYELELPSPVNDVAFSPSNSRFAVLTSDGSLSIYE 454 (928)
T ss_pred ccCceEEEEEeCCeEEEecccccCCCchHhceEEcCCCCcEEEEEeCCCCeEEEEECCCCEEEEE
Confidence 111 1112356799999999998899999999999884
|
|
| >PRK04043 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.07 E-value=6.7e-08 Score=110.08 Aligned_cols=201 Identities=10% Similarity=0.038 Sum_probs=136.0
Q ss_pred CeEEEEEcCCCCceeEEeeccccceEEEEEcCCCCe-EEEEEeC--CCcEEEEECCCCeeeeEEecCCCeeEEEEecCCC
Q 003236 619 RTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKED-LLCSCDN--NSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLG 695 (837)
Q Consensus 619 g~I~IWDl~~~~~~~~~~~~h~~~V~sl~fspdg~~-llasgs~--Dg~I~vwDl~t~~~i~~~~~~~~i~sl~~sp~g~ 695 (837)
..|.+-|.+... .+.+.... .+....|+|+++. ++++... +..|+++|+.+++........+......|+||++
T Consensus 169 ~~l~~~d~dg~~--~~~~~~~~-~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~~~g~~~~~~~SPDG~ 245 (419)
T PRK04043 169 SNIVLADYTLTY--QKVIVKGG-LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIASSQGMLVVSDVSKDGS 245 (419)
T ss_pred ceEEEECCCCCc--eeEEccCC-CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEecCCCcEEeeEECCCCC
Confidence 355565555432 23333333 7788999999986 4443332 3579999999888776665556667788999998
Q ss_pred EEEEEEc---CCeEEEEECCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEeCC----eEEEEEcCCCCCceeEEEeecCC
Q 003236 696 RILAAAI---ENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVSDE----LVRVWSIGSGSKGECIHELSCTG 768 (837)
Q Consensus 696 ~llags~---dg~I~iwDl~s~~~~~~l~~h~~~V~sl~~spdg~~LasgsDg----~I~IwDl~s~~~~~~i~~~~~~~ 768 (837)
.++.... +..|+++|+.++... .+..+........|+|||+.|+..++. .|+++|+.++... .+. .. +
T Consensus 246 ~la~~~~~~g~~~Iy~~dl~~g~~~-~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~-rlt-~~--g 320 (419)
T PRK04043 246 KLLLTMAPKGQPDIYLYDTNTKTLT-QITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVE-QVV-FH--G 320 (419)
T ss_pred EEEEEEccCCCcEEEEEECCCCcEE-EcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeE-eCc-cC--C
Confidence 8776543 357899999887643 344344434566899999988887733 7888898876321 111 11 1
Q ss_pred CceEEEEEeCCCCEEEEEEcC---------CeEEEEECCCCcEEEeccCCCCeeEEEEeCCCCEEEEEECC
Q 003236 769 NKFHSCVFHPTFPSLLVIGCY---------ETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHD 830 (837)
Q Consensus 769 ~~I~sv~fspdg~~L~sgs~d---------g~I~IwDl~s~~~~~l~~h~~~V~sla~spdg~~LaSgs~D 830 (837)
.. ...|+|+|+.|+..+.. ..|++.|+.++....+... .......|+|||+.|+..+.+
T Consensus 321 ~~--~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~~LT~~-~~~~~p~~SPDG~~I~f~~~~ 388 (419)
T PRK04043 321 KN--NSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIRRLTAN-GVNQFPRFSSDGGSIMFIKYL 388 (419)
T ss_pred Cc--CceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeEECCCC-CCcCCeEECCCCCEEEEEEcc
Confidence 11 24899999999887754 2788999998887655543 233468999999987766644
|
|
| >KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.05 E-value=1.4e-08 Score=104.50 Aligned_cols=241 Identities=12% Similarity=0.100 Sum_probs=164.4
Q ss_pred CCCeEEEEEcC---CCC-EEEEEECCCcEEEEeCCCCeEEEEeccCC------CCeEEEEEcCCCCEEEEEeCCCeEEEE
Q 003236 555 TSKVESCHFSP---DGK-LLATGGHDKKAVLWCTESFTVKSTLEEHT------QWITDVRFSPSLSRLATSSADRTVRVW 624 (837)
Q Consensus 555 ~~~V~sl~fSp---dg~-~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~------~~I~~l~fspdg~~Latgs~Dg~I~IW 624 (837)
+..+..+.|.. +|. .|+-+..+|.|.+|..........+.+-. ....++.|++.+..++++..+|.+.+-
T Consensus 69 ts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~~lslD~~~~~~~i~vs~s~G~~~~v 148 (339)
T KOG0280|consen 69 TSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSSKKISVVEALSLDISTSGTKIFVSDSRGSISGV 148 (339)
T ss_pred ccccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccchhhhhheeeeEEEeeccCceEEEEcCCCcEEEE
Confidence 34466677754 555 56667778999999766544444443211 124578899989999999999999855
Q ss_pred EcCCCC-ceeEEeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECC-CCeeeeE--EecCCCeeEEEEec-CCCEEEE
Q 003236 625 DTENPD-YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSIN-NGSCAGV--FKCQSGATQMRFQP-RLGRILA 699 (837)
Q Consensus 625 Dl~~~~-~~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~-t~~~i~~--~~~~~~i~sl~~sp-~g~~lla 699 (837)
+..... ..+..++.|..+++...|+.....++++|+.|+.+..||++ .++.+.. ..+..+|.+|.-+| +..+|++
T Consensus 149 ~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~~~~~~I~T 228 (339)
T KOG0280|consen 149 YETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTSGVVSIYSSPPKPTYIAT 228 (339)
T ss_pred ecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceeeecceeeecceEEEecCCCCCceEEE
Confidence 554332 22357889999999999998888999999999999999999 3444433 23467888888876 4668999
Q ss_pred EEcCCeEEEEECCC-CeEEEEEcCCCCCEEEEEEcCCC--CEEEEEeCCeEEEEEcCCCCCc--eeEEEeecCCCceEEE
Q 003236 700 AAIENYISILDVET-QVCRLKLQGHKNQVHSVCWNTSG--EYLASVSDELVRVWSIGSGSKG--ECIHELSCTGNKFHSC 774 (837)
Q Consensus 700 gs~dg~I~iwDl~s-~~~~~~l~~h~~~V~sl~~spdg--~~LasgsDg~I~IwDl~s~~~~--~~i~~~~~~~~~I~sv 774 (837)
|+.|..|++||.+. ++++..-. -.+.|..+.++|.- .+|+++--.-.+|.++..+... ......+.|..-+..-
T Consensus 229 GsYDe~i~~~DtRnm~kPl~~~~-v~GGVWRi~~~p~~~~~lL~~CMh~G~ki~~~~~~~~e~~~~~~s~~~hdSl~YG~ 307 (339)
T KOG0280|consen 229 GSYDECIRVLDTRNMGKPLFKAK-VGGGVWRIKHHPEIFHRLLAACMHNGAKILDSSDKVLEFQIVLPSDKIHDSLCYGG 307 (339)
T ss_pred eccccceeeeehhcccCccccCc-cccceEEEEecchhhhHHHHHHHhcCceEEEecccccchheeeeccccccceeecc
Confidence 99999999999995 56665443 34789999999853 4555555444677777654321 1334445555555556
Q ss_pred EEeCCCCEEEEEEc-CCeEE-EEE
Q 003236 775 VFHPTFPSLLVIGC-YETLE-LWN 796 (837)
Q Consensus 775 ~fspdg~~L~sgs~-dg~I~-IwD 796 (837)
.|.....+|++++. |+.++ +|-
T Consensus 308 DWd~~~~~lATCsFYDk~~~~~Wl 331 (339)
T KOG0280|consen 308 DWDSKDSFLATCSFYDKKIRQLWL 331 (339)
T ss_pred ccccccceeeeeeccccceeeeee
Confidence 66444456777654 33433 554
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.04 E-value=7.2e-08 Score=108.62 Aligned_cols=307 Identities=11% Similarity=0.168 Sum_probs=196.2
Q ss_pred CCCeEEcccCCCceEEeecCCCCCCCCccccccccCCCeeeeEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEeC
Q 003236 505 MDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCT 584 (837)
Q Consensus 505 ~~~~v~~Gs~D~~v~~w~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~H~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~ 584 (837)
..+++++|+.|+.+++.......+.....+ ......+.--+++.||++.|.-+.|+.....|-+...+|.|.||-+
T Consensus 25 e~gyIAcgG~dGlLKVlKl~t~t~d~~~~g----laa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~GlIiVWml 100 (1189)
T KOG2041|consen 25 ESGYIACGGADGLLKVLKLGTDTTDLNKSG----LAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTSGLIIVWML 100 (1189)
T ss_pred cCCeEEeccccceeEEEEccccCCcccccc----cccccccchhhhhccCcceEEEEEeccccccccccCCCceEEEEee
Confidence 348999999999999985544332222111 1123344556789999999999999999999999999999999988
Q ss_pred CCCeEEEEe--ccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCc-------------------------------
Q 003236 585 ESFTVKSTL--EEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDY------------------------------- 631 (837)
Q Consensus 585 ~t~~~~~~l--~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~~~~------------------------------- 631 (837)
-.+.-.... ...++.|.+++|..||..|+....||.|.|=.++.+..
T Consensus 101 ykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRIwgKeLkg~~l~hv~ws~D~~~~Lf~~ange~ 180 (1189)
T KOG2041|consen 101 YKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRIWGKELKGQLLAHVLWSEDLEQALFKKANGET 180 (1189)
T ss_pred ecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccceecchhcchheccceeecccHHHHHhhhcCCcE
Confidence 776544322 23456788999999999988888888776544432110
Q ss_pred ----------------e-e---EEeeccccceEEEEEc--------CCCCeEEEEEeCCCcEEEEECCCCeeeeEEecCC
Q 003236 632 ----------------S-L---RTFTGHSTTVMSLDFH--------PSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQS 683 (837)
Q Consensus 632 ----------------~-~---~~~~~h~~~V~sl~fs--------pdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~~~ 683 (837)
+ + ..+......|..+.|. |+. -.++.|..+|.+.+-.-.+......+..+-
T Consensus 181 hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdr-P~lavcy~nGr~QiMR~eND~~Pvv~dtgm 259 (1189)
T KOG2041|consen 181 HLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDR-PRLAVCYANGRMQIMRSENDPEPVVVDTGM 259 (1189)
T ss_pred EEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCC-CEEEEEEcCceehhhhhcCCCCCeEEeccc
Confidence 0 0 0011111224455553 233 356677777777776555554445555556
Q ss_pred CeeEEEEecCCCEEEEEEcCC---------eEEEEECCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCeEEEEEcCC
Q 003236 684 GATQMRFQPRLGRILAAAIEN---------YISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGS 754 (837)
Q Consensus 684 ~i~sl~~sp~g~~llags~dg---------~I~iwDl~s~~~~~~l~~h~~~V~sl~~spdg~~LasgsDg~I~IwDl~s 754 (837)
.+....|+++|..+++++.+. .|.+|.. -|+.+.+++.....|++++|-..|-.++.+-|+.|++=+++.
T Consensus 260 ~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fysp-~G~i~gtlkvpg~~It~lsWEg~gLriA~AvdsfiyfanIRP 338 (1189)
T KOG2041|consen 260 KIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYSP-YGHIVGTLKVPGSCITGLSWEGTGLRIAIAVDSFIYFANIRP 338 (1189)
T ss_pred EeecceecCCCcEEEEccCcccccCccccceEEEecc-chhheEEEecCCceeeeeEEcCCceEEEEEecceEEEEeecc
Confidence 788999999999999888642 4455443 367777888888899999999999999999999999999886
Q ss_pred CCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE-EeccCCCCeeEEEEeCCCCEEEEEECCCcE
Q 003236 755 GSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCV 833 (837)
Q Consensus 755 ~~~~~~i~~~~~~~~~I~sv~fspdg~~L~sgs~dg~I~IwDl~s~~~~-~l~~h~~~V~sla~spdg~~LaSgs~DG~I 833 (837)
..+...+. ..+.|.-.++. ...-.|.+||..+.+.. ....| ..++++..+--.|++-.+||.|
T Consensus 339 ~ykWgy~e---------~TvVy~y~~~e----~p~y~i~Fwdtk~nek~vK~V~~---~~~~a~~~ehCvL~~~~d~~~i 402 (1189)
T KOG2041|consen 339 EYKWGYIE---------ETVVYVYQKEE----LPQYGIMFWDTKTNEKTVKTVTH---FENMAFYREHCVLINRQDDGVI 402 (1189)
T ss_pred cceEEEee---------eEEEEEEccCC----CcceEEEEEecccChhhhhhhcc---eeehheecccEEEEeccccCCC
Confidence 53211111 01111111100 00126889998776644 22222 3445555554455555555554
|
|
| >KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.02 E-value=2.2e-09 Score=130.94 Aligned_cols=188 Identities=22% Similarity=0.295 Sum_probs=149.1
Q ss_pred ccCCCeEEcccCCCceEEeecCCCCCCCCccccccccCCCeeeeEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEE
Q 003236 503 TDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLW 582 (837)
Q Consensus 503 ~~~~~~v~~Gs~D~~v~~w~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~H~~~V~sl~fSpdg~~Lasgs~Dg~I~VW 582 (837)
.+.+.+..+|+.|+.|++|.+.. +..+.+.++.. ...|+.+.|+..|..+..+..||.+.+|
T Consensus 2217 Hp~~~~Yltgs~dgsv~~~~w~~----------------~~~v~~~rt~g--~s~vtr~~f~~qGnk~~i~d~dg~l~l~ 2278 (2439)
T KOG1064|consen 2217 HPSDPYYLTGSQDGSVRMFEWGH----------------GQQVVCFRTAG--NSRVTRSRFNHQGNKFGIVDGDGDLSLW 2278 (2439)
T ss_pred CCCCceEEecCCCceEEEEeccC----------------CCeEEEeeccC--cchhhhhhhcccCCceeeeccCCceeec
Confidence 45567888999999999985543 33334444332 3889999999999999999999999999
Q ss_pred eCCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEe---CCCeEEEEEcCCCCceeEEeeccccceEEEEEcCCCCeEEEEE
Q 003236 583 CTESFTVKSTLEEHTQWITDVRFSPSLSRLATSS---ADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSC 659 (837)
Q Consensus 583 d~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs---~Dg~I~IWDl~~~~~~~~~~~~h~~~V~sl~fspdg~~llasg 659 (837)
.+. .+.......|+....+++|.. ..+++++ .++.+.+||..-.......-..|.+.++++++.|.. .++++|
T Consensus 2279 q~~-pk~~~s~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H~~gaT~l~~~P~~-qllisg 2354 (2439)
T KOG1064|consen 2279 QAS-PKPYTSWQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSLVHTCHDGGATVLAYAPKH-QLLISG 2354 (2439)
T ss_pred ccC-CcceeccccCCccccceeeee--hhhhccccCCCCCcccchhcccCcccceeeeecCCCceEEEEcCcc-eEEEec
Confidence 977 567778889999999999975 6777765 478999999765433233338899999999999985 577899
Q ss_pred eCCCcEEEEECCCCeeeeEEecCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEc
Q 003236 660 DNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQ 721 (837)
Q Consensus 660 s~Dg~I~vwDl~t~~~i~~~~~~~~i~sl~~sp~g~~llags~dg~I~iwDl~s~~~~~~l~ 721 (837)
+.+|.|++||++..+.+..+.. +. ...++++++..|.|+||++.....++.+.
T Consensus 2355 gr~G~v~l~D~rqrql~h~~~~--------~~-~~~~f~~~ss~g~ikIw~~s~~~ll~~~p 2407 (2439)
T KOG1064|consen 2355 GRKGEVCLFDIRQRQLRHTFQA--------LD-TREYFVTGSSEGNIKIWRLSEFGLLHTFP 2407 (2439)
T ss_pred CCcCcEEEeehHHHHHHHHhhh--------hh-hhheeeccCcccceEEEEccccchhhcCc
Confidence 9999999999998887777664 33 45789999999999999998876666554
|
|
| >KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.02 E-value=1.6e-09 Score=132.05 Aligned_cols=209 Identities=16% Similarity=0.239 Sum_probs=164.1
Q ss_pred CEEEEEeCCCeEEEEEcCCCCceeEEeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeeEEec--CCCeeE
Q 003236 610 SRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC--QSGATQ 687 (837)
Q Consensus 610 ~~Latgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~--~~~i~s 687 (837)
..+.....++...-|..+... ..+..+-..|.++.-+|...+++ +|+.||.|++|....+..+..++. ...++.
T Consensus 2181 ~~~~~~n~~~~~~tq~~~~~~---~~~k~~v~~v~r~~sHp~~~~Yl-tgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr 2256 (2439)
T KOG1064|consen 2181 NRFTPSNLPWLGSTQTSRGAS---VMIKHPVENVRRMTSHPSDPYYL-TGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTR 2256 (2439)
T ss_pred ccCCcccCCccccceecccce---eEeecccCceeeecCCCCCceEE-ecCCCceEEEEeccCCCeEEEeeccCcchhhh
Confidence 344444445555656555432 23334556788888888877555 999999999999999888887775 466888
Q ss_pred EEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEe----CCeEEEEEcCCCCCceeEEE
Q 003236 688 MRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS----DELVRVWSIGSGSKGECIHE 763 (837)
Q Consensus 688 l~~sp~g~~llags~dg~I~iwDl~s~~~~~~l~~h~~~V~sl~~spdg~~Lasgs----Dg~I~IwDl~s~~~~~~i~~ 763 (837)
+.|+..|+.+.++..||.+.+|.+. .++....+.|....+.+.|-. ..+++.+ ++.+.+||..-.....+++
T Consensus 2257 ~~f~~qGnk~~i~d~dg~l~l~q~~-pk~~~s~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~v~- 2332 (2439)
T KOG1064|consen 2257 SRFNHQGNKFGIVDGDGDLSLWQAS-PKPYTSWQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSLVH- 2332 (2439)
T ss_pred hhhcccCCceeeeccCCceeecccC-CcceeccccCCccccceeeee--hhhhccccCCCCCcccchhcccCcccceee-
Confidence 9999999999999999999999988 667777888999888888875 5555543 5589999987654445666
Q ss_pred eecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE-EeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 003236 764 LSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 837 (837)
Q Consensus 764 ~~~~~~~I~sv~fspdg~~L~sgs~dg~I~IwDl~s~~~~-~l~~h~~~V~sla~spdg~~LaSgs~DG~I~IWd 837 (837)
.+|...++++++.|....|++|+.+|.|++||++..+.. .+.. ++ ...++++|+..|.|+||+
T Consensus 2333 -~~H~~gaT~l~~~P~~qllisggr~G~v~l~D~rqrql~h~~~~---------~~-~~~~f~~~ss~g~ikIw~ 2396 (2439)
T KOG1064|consen 2333 -TCHDGGATVLAYAPKHQLLISGGRKGEVCLFDIRQRQLRHTFQA---------LD-TREYFVTGSSEGNIKIWR 2396 (2439)
T ss_pred -eecCCCceEEEEcCcceEEEecCCcCcEEEeehHHHHHHHHhhh---------hh-hhheeeccCcccceEEEE
Confidence 789999999999999999999999999999999887765 2222 44 567899999999999996
|
|
| >PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species | Back alignment and domain information |
|---|
Probab=99.00 E-value=9.6e-07 Score=93.46 Aligned_cols=218 Identities=7% Similarity=0.022 Sum_probs=143.9
Q ss_pred EEEEEcC-CCCEEEEEeCCCeEEEEEcCCCCceeEEeeccccceEEEEEc-CCCCeEEEEEeCCCcEEEEECCCCeeeeE
Q 003236 601 TDVRFSP-SLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFH-PSKEDLLCSCDNNSEIRYWSINNGSCAGV 678 (837)
Q Consensus 601 ~~l~fsp-dg~~Latgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~sl~fs-pdg~~llasgs~Dg~I~vwDl~t~~~i~~ 678 (837)
.+++|.+ ++.++++-...+.|+.|+..++.... +.... ...+++. ++ ..++ .+.. +.+.++|+.+++....
T Consensus 3 Egp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~--~~~~~--~~G~~~~~~~-g~l~-v~~~-~~~~~~d~~~g~~~~~ 75 (246)
T PF08450_consen 3 EGPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEV--IDLPG--PNGMAFDRPD-GRLY-VADS-GGIAVVDPDTGKVTVL 75 (246)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEETTTTEEEE--EESSS--EEEEEEECTT-SEEE-EEET-TCEEEEETTTTEEEEE
T ss_pred cceEEECCCCEEEEEEcCCCEEEEEECCCCeEEE--EecCC--CceEEEEccC-CEEE-EEEc-CceEEEecCCCcEEEE
Confidence 3678988 66666676678999999998865422 22222 6777777 55 4455 4443 4566679999876655
Q ss_pred Eec------CCCeeEEEEecCCCEEEEEEcC--------CeEEEEECCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEe-
Q 003236 679 FKC------QSGATQMRFQPRLGRILAAAIE--------NYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS- 743 (837)
Q Consensus 679 ~~~------~~~i~sl~~sp~g~~llags~d--------g~I~iwDl~s~~~~~~l~~h~~~V~sl~~spdg~~Lasgs- 743 (837)
... ....+.+++.++|+.+++.... |.|..++.. ++...... .-...+.|+|+|+++.|+++.
T Consensus 76 ~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~-~~~~pNGi~~s~dg~~lyv~ds 153 (246)
T PF08450_consen 76 ADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVAD-GLGFPNGIAFSPDGKTLYVADS 153 (246)
T ss_dssp EEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEE-EESSEEEEEEETTSSEEEEEET
T ss_pred eeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEec-CcccccceEECCcchheeeccc
Confidence 553 2346789999998866665543 568888888 55444333 345678999999999887665
Q ss_pred -CCeEEEEEcCCCCC-ce---eEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE-EeccCCCCeeEEEE
Q 003236 744 -DELVRVWSIGSGSK-GE---CIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAA 817 (837)
Q Consensus 744 -Dg~I~IwDl~s~~~-~~---~i~~~~~~~~~I~sv~fspdg~~L~sgs~dg~I~IwDl~s~~~~-~l~~h~~~V~sla~ 817 (837)
.+.|..|++..... .. .+..+....+..-.+++..+|+..++....+.|.++|.. ++.+ .+......+++++|
T Consensus 154 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~~~~~i~~p~~~~t~~~f 232 (246)
T PF08450_consen 154 FNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-GKLLREIELPVPRPTNCAF 232 (246)
T ss_dssp TTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-SCEEEEEE-SSSSEEEEEE
T ss_pred ccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-ccEEEEEcCCCCCEEEEEE
Confidence 77899999864332 11 222223223357889999999877777778899999988 6666 34433468999999
Q ss_pred e-CCCCEEEEEE
Q 003236 818 S-TVNGMVASAS 828 (837)
Q Consensus 818 s-pdg~~LaSgs 828 (837)
. ++.+.|+..+
T Consensus 233 gg~~~~~L~vTt 244 (246)
T PF08450_consen 233 GGPDGKTLYVTT 244 (246)
T ss_dssp ESTTSSEEEEEE
T ss_pred ECCCCCEEEEEe
Confidence 5 5656555443
|
These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A .... |
| >KOG1912 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.98 E-value=8.5e-08 Score=109.26 Aligned_cols=211 Identities=15% Similarity=0.179 Sum_probs=156.5
Q ss_pred eeeeEEEEecCCCCCeEEEEEcCCC------------CEEEEEECCCcEEEEeCCCCeEEEEeccCCCCeEEEEEcC---
Q 003236 543 FTFTEFQLIPASTSKVESCHFSPDG------------KLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSP--- 607 (837)
Q Consensus 543 ~~~~~~~~l~~H~~~V~sl~fSpdg------------~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~I~~l~fsp--- 607 (837)
.....+.++.-|...|+.|.|.|-. -+||++...|.|.|||...+..+..+..|.++|.+++|-+
T Consensus 43 ~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~s~~~~l~~~~~~~qdl~W~~~rd 122 (1062)
T KOG1912|consen 43 RSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLASVINWLSHSNDSVQDLCWVPARD 122 (1062)
T ss_pred hhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehhhhhhhhhcCCCcchhheeeeeccC
Confidence 3445678888999999999998731 2578888889999999999999999999999999999977
Q ss_pred CC-CEEEEEeCCCeEEEEEcCCCCceeEEeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCC-------CeeeeEE
Q 003236 608 SL-SRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN-------GSCAGVF 679 (837)
Q Consensus 608 dg-~~Latgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t-------~~~i~~~ 679 (837)
+. ..|+.-....+|.+|+..+++. +..+........|+.+.|-...-++.-+..|.|.+.+.-. ++.....
T Consensus 123 ~Srd~LlaIh~ss~lvLwntdtG~k-~Wk~~ys~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~ 201 (1062)
T KOG1912|consen 123 DSRDVLLAIHGSSTLVLWNTDTGEK-FWKYDYSHEILSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQIT 201 (1062)
T ss_pred cchheeEEecCCcEEEEEEccCCce-eeccccCCcceeeeeeCCCCcceEEEEccCceEEEEeccCCCCCCCCceeEEEe
Confidence 33 4666777788999999999875 5555555567788999997665565666677777665421 1111111
Q ss_pred ecCCC--------------------------eeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEc
Q 003236 680 KCQSG--------------------------ATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWN 733 (837)
Q Consensus 680 ~~~~~--------------------------i~sl~~sp~g~~llags~dg~I~iwDl~s~~~~~~l~~h~~~V~sl~~s 733 (837)
..++. ...++|+|.-+.++.......+.++|++-..++....-..+.+.-+.|-
T Consensus 202 sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~~prellv~dle~~~~l~vvpier~~akfv~vl 281 (1062)
T KOG1912|consen 202 SDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNILFITFPRELLVFDLEYECCLAVVPIERGGAKFVDVL 281 (1062)
T ss_pred cCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceEEEEeccceEEEcchhhceeEEEEeccCCcceeEec
Confidence 11000 1235678888888888889999999999888888777677777777887
Q ss_pred CCC--CEEEEEe-CCeEEEEEcCC
Q 003236 734 TSG--EYLASVS-DELVRVWSIGS 754 (837)
Q Consensus 734 pdg--~~Lasgs-Dg~I~IwDl~s 754 (837)
|++ ..|++.. ||.+.||-.+.
T Consensus 282 P~~~rd~LfclH~nG~ltirvrk~ 305 (1062)
T KOG1912|consen 282 PDPRRDALFCLHSNGRLTIRVRKE 305 (1062)
T ss_pred cCCCcceEEEEecCCeEEEEEeec
Confidence 765 4677777 99999986543
|
|
| >KOG4532 consensus WD40-like repeat containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.98 E-value=6.2e-08 Score=98.50 Aligned_cols=223 Identities=9% Similarity=0.001 Sum_probs=154.1
Q ss_pred CCCEEEEEeCCCeEEEEEcCCCCceeEEeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeeEEecC-CCee
Q 003236 608 SLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ-SGAT 686 (837)
Q Consensus 608 dg~~Latgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~~-~~i~ 686 (837)
...+|+.|+.-|...+|...+..........|...|+-+.=.-+...-+..++.|.++++.++.-+......... -...
T Consensus 83 kc~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~~~~h~~~~~~n 162 (344)
T KOG4532|consen 83 KCVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNKFAVHNQNLTQN 162 (344)
T ss_pred cccEEEeccccceeeeecccCcccceeeecccccchhhhhhhcccccceeeccCCcceeEEEEecCcccceeecccccee
Confidence 345899999999999999998776556666666554433222222333446777888888888754433322221 3378
Q ss_pred EEEEecCCCEEEEEEcCCeEEEEECCCC-e-EEE-EEcCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCce--e
Q 003236 687 QMRFQPRLGRILAAAIENYISILDVETQ-V-CRL-KLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGE--C 760 (837)
Q Consensus 687 sl~~sp~g~~llags~dg~I~iwDl~s~-~-~~~-~l~~h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~--~ 760 (837)
++.+++++++.++.+....|..|.+... + .+. .....+..-.+..|+.....+|++. ||++.|||++...... .
T Consensus 163 s~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~ 242 (344)
T KOG4532|consen 163 SLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPMAEI 242 (344)
T ss_pred eeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcceEEEEecCCcEEEEEecccccchhhh
Confidence 8999999999999999999999988753 2 222 2333445567889999999999999 9999999999764321 1
Q ss_pred EEEeecCCCceEEEEEeCCCC--EEEEEEcCCeEEEEECCCCcEE--------EeccCCC-CeeEEEEeCCCCEEEEEEC
Q 003236 761 IHELSCTGNKFHSCVFHPTFP--SLLVIGCYETLELWNMTENKTL--------TLSAHDK-LVSSLAASTVNGMVASASH 829 (837)
Q Consensus 761 i~~~~~~~~~I~sv~fspdg~--~L~sgs~dg~I~IwDl~s~~~~--------~l~~h~~-~V~sla~spdg~~LaSgs~ 829 (837)
......|.+.+..|.|++.|. .|+..-.-+.+.+.|+++++-. ....|.. .|..-.|+.++..+.+.++
T Consensus 243 sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~i~~d~~~~~~tq~ifgt~f~~~n~s~~v~~e 322 (344)
T KOG4532|consen 243 SSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIVIPDDVERKHNTQHIFGTNFNNENESNDVKNE 322 (344)
T ss_pred cccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEEecCccccccccccccccccccCCCcccccccc
Confidence 223445789999999998773 4555555679999999988744 1223333 3777888887776665554
Q ss_pred C
Q 003236 830 D 830 (837)
Q Consensus 830 D 830 (837)
+
T Consensus 323 ~ 323 (344)
T KOG4532|consen 323 L 323 (344)
T ss_pred h
Confidence 4
|
|
| >PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species | Back alignment and domain information |
|---|
Probab=98.97 E-value=2.2e-06 Score=90.63 Aligned_cols=218 Identities=14% Similarity=0.171 Sum_probs=147.0
Q ss_pred EEEEcC-CCCEEEEEECCCcEEEEeCCCCeEEEEeccCCCCeEEEEEc-CCCCEEEEEeCCCeEEEEEcCCCCceeEEee
Q 003236 560 SCHFSP-DGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFS-PSLSRLATSSADRTVRVWDTENPDYSLRTFT 637 (837)
Q Consensus 560 sl~fSp-dg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~I~~l~fs-pdg~~Latgs~Dg~I~IWDl~~~~~~~~~~~ 637 (837)
+++|.+ ++.++++--..+.|+.|+..++...... ... ...+++. ++ ..|+.+..++ +.++|+.+++.......
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~~~-~~~--~~G~~~~~~~-g~l~v~~~~~-~~~~d~~~g~~~~~~~~ 78 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEVID-LPG--PNGMAFDRPD-GRLYVADSGG-IAVVDPDTGKVTVLADL 78 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEE-SSS--EEEEEEECTT-SEEEEEETTC-EEEEETTTTEEEEEEEE
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEEEe-cCC--CceEEEEccC-CEEEEEEcCc-eEEEecCCCcEEEEeec
Confidence 678998 7777777777899999999887665422 122 6777777 56 4555555554 55669887653222111
Q ss_pred ---c-cccceEEEEEcCCCCeEEEEEeCC--------CcEEEEECCCCeeeeEEecCCCeeEEEEecCCCEEEEEE-cCC
Q 003236 638 ---G-HSTTVMSLDFHPSKEDLLCSCDNN--------SEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAA-IEN 704 (837)
Q Consensus 638 ---~-h~~~V~sl~fspdg~~llasgs~D--------g~I~vwDl~t~~~i~~~~~~~~i~sl~~sp~g~~llags-~dg 704 (837)
. .....+.+++.++|. +.++.... |.|+.++.. ++.......-...+.++|+|+++.|+++. ..+
T Consensus 79 ~~~~~~~~~~ND~~vd~~G~-ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~~~~~pNGi~~s~dg~~lyv~ds~~~ 156 (246)
T PF08450_consen 79 PDGGVPFNRPNDVAVDPDGN-LYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVADGLGFPNGIAFSPDGKTLYVADSFNG 156 (246)
T ss_dssp ETTCSCTEEEEEEEE-TTS--EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEEEESSEEEEEEETTSSEEEEEETTTT
T ss_pred cCCCcccCCCceEEEcCCCC-EEEEecCCCccccccccceEEECCC-CeEEEEecCcccccceEECCcchheeecccccc
Confidence 1 346788999999987 55454432 568888888 67666666666788999999999887655 468
Q ss_pred eEEEEECCC--C-----eEEEEEcCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEE
Q 003236 705 YISILDVET--Q-----VCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVF 776 (837)
Q Consensus 705 ~I~iwDl~s--~-----~~~~~l~~h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~f 776 (837)
.|..|++.. . +....+....+....++++.+|+++++.. .+.|.++|.. + +.+..+......+++|+|
T Consensus 157 ~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G---~~~~~i~~p~~~~t~~~f 232 (246)
T PF08450_consen 157 RIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-G---KLLREIELPVPRPTNCAF 232 (246)
T ss_dssp EEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-S---CEEEEEE-SSSSEEEEEE
T ss_pred eeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-c---cEEEEEcCCCCCEEEEEE
Confidence 899999853 2 11222232333488999999999887766 8899999987 5 566666655568999999
Q ss_pred e-CCCCEEEEEEc
Q 003236 777 H-PTFPSLLVIGC 788 (837)
Q Consensus 777 s-pdg~~L~sgs~ 788 (837)
. ++.+.|++.+.
T Consensus 233 gg~~~~~L~vTta 245 (246)
T PF08450_consen 233 GGPDGKTLYVTTA 245 (246)
T ss_dssp ESTTSSEEEEEEB
T ss_pred ECCCCCEEEEEeC
Confidence 4 67677776653
|
These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A .... |
| >COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown] | Back alignment and domain information |
|---|
Probab=98.96 E-value=2.8e-07 Score=100.08 Aligned_cols=270 Identities=14% Similarity=0.109 Sum_probs=169.3
Q ss_pred cCCCCCeEEEEEcCCCCEEEEEECCC-cEEEEeCCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCC
Q 003236 552 PASTSKVESCHFSPDGKLLATGGHDK-KAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPD 630 (837)
Q Consensus 552 ~~H~~~V~sl~fSpdg~~Lasgs~Dg-~I~VWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~~~ 630 (837)
-+|.+.|.-..+..+++-++.|..|| .|-|||..+++.... ...-+.|.++..+++|++++++.....|.+.|++++.
T Consensus 356 v~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~kr~-e~~lg~I~av~vs~dGK~~vvaNdr~el~vididngn 434 (668)
T COG4946 356 VGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVKRI-EKDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGN 434 (668)
T ss_pred cCCCCceEEEEEccCCcceEEeccCCceEEEEecCCceEEEe-eCCccceEEEEEcCCCcEEEEEcCceEEEEEEecCCC
Confidence 37888899999999999999999999 899999888765544 4566789999999999999999999999999999977
Q ss_pred ceeEEeeccccceEEEEEcCCCCeEEEEEeCC----CcEEEEECCCCeeeeEEecCCCeeEEEEecCCCEEEEEEcCCeE
Q 003236 631 YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN----SEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYI 706 (837)
Q Consensus 631 ~~~~~~~~h~~~V~sl~fspdg~~llasgs~D----g~I~vwDl~t~~~i~~~~~~~~i~sl~~sp~g~~llags~dg~I 706 (837)
. ...-....+-|+.++|+|++..+.+ +--+ ..|+++|+..++..........-.+-+|.|++++|+.-+.-.
T Consensus 435 v-~~idkS~~~lItdf~~~~nsr~iAY-afP~gy~tq~Iklydm~~~Kiy~vTT~ta~DfsPaFD~d~ryLYfLs~Rs-- 510 (668)
T COG4946 435 V-RLIDKSEYGLITDFDWHPNSRWIAY-AFPEGYYTQSIKLYDMDGGKIYDVTTPTAYDFSPAFDPDGRYLYFLSARS-- 510 (668)
T ss_pred e-eEecccccceeEEEEEcCCceeEEE-ecCcceeeeeEEEEecCCCeEEEecCCcccccCcccCCCCcEEEEEeccc--
Confidence 4 3333445578999999999775543 3333 479999999988877766556667788999999887765411
Q ss_pred EEEECCCCeEEEE--EcCCCCCEEEE----EEcCCCCEEEEEe--CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeC
Q 003236 707 SILDVETQVCRLK--LQGHKNQVHSV----CWNTSGEYLASVS--DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHP 778 (837)
Q Consensus 707 ~iwDl~s~~~~~~--l~~h~~~V~sl----~~spdg~~Lasgs--Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fsp 778 (837)
.|......+.. +..+..+...+ ..+|-....-... ++.+-+=++.... ..+....+...+++--.
T Consensus 511 --LdPs~Drv~fnf~f~~vskPylv~L~~g~~sP~~q~p~~~~~ea~e~dle~ie~r~-----eP~pVee~dY~sI~~lk 583 (668)
T COG4946 511 --LDPSNDRVIFNFSFQRVSKPYLVVLGRGYYSPFNQPPDEANSEAGEVDLEGIEDRV-----EPFPVEEGDYRSIAGLK 583 (668)
T ss_pred --cCCCCCeeEEEEEEeeeccceEEEecCCCCChhhcCchhcCccccceehhhhcccc-----cccccCccceeEeeecC
Confidence 11111111111 11111111111 0111111111111 3333322222111 11111111112222112
Q ss_pred CCCE--------------EEEEEcCCeEEEEECCCCcEEEeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 003236 779 TFPS--------------LLVIGCYETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 837 (837)
Q Consensus 779 dg~~--------------L~sgs~dg~I~IwDl~s~~~~~l~~h~~~V~sla~spdg~~LaSgs~DG~I~IWd 837 (837)
+++. +-..-..|.|.+||+++.+...+ ...++++..|+|++.|.. -.||.++++|
T Consensus 584 ~~killfs~pi~Gefs~yy~gq~~kG~l~~ydletkk~~e~---k~nvss~rlS~D~s~ilv-k~d~kl~~f~ 652 (668)
T COG4946 584 NGKILLFSYPIHGEFSQYYWGQPEKGRLEKYDLETKKVEEY---KDNVSSFRLSSDGSKILV-KLDGKLRLFD 652 (668)
T ss_pred CCeEEEEEeeccchhhhhhcCCCccceEEEEecchhhHHHH---hcccceEEEcCCCCEEEE-EeCCeEEEEe
Confidence 2211 11122346888999888765433 456899999999998888 7899999875
|
|
| >KOG1912 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.94 E-value=4.3e-08 Score=111.56 Aligned_cols=237 Identities=14% Similarity=0.194 Sum_probs=173.7
Q ss_pred CeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEeccCCCCeEEEEEcCCC------------CEEEEEeCCCeEEEE
Q 003236 557 KVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSL------------SRLATSSADRTVRVW 624 (837)
Q Consensus 557 ~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~I~~l~fspdg------------~~Latgs~Dg~I~IW 624 (837)
.-.++.|+|.| +||.|+. ..|.|.|..+.+.+..++.|...|+.|.|.|.. -+||++...|.|.+|
T Consensus 17 N~~A~Dw~~~G-LiAygsh-slV~VVDs~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~ 94 (1062)
T KOG1912|consen 17 NRNAADWSPSG-LIAYGSH-SLVSVVDSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILV 94 (1062)
T ss_pred cccccccCccc-eEEEecC-ceEEEEehhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEE
Confidence 36678999887 8888875 578899999999999999999999999998731 257777788999999
Q ss_pred EcCCCCceeEEeeccccceEEEEEcCC---CCeEEEEEeCCCcEEEEECCCCeeeeEEecCCC-eeEEEEec-CCCEEEE
Q 003236 625 DTENPDYSLRTFTGHSTTVMSLDFHPS---KEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSG-ATQMRFQP-RLGRILA 699 (837)
Q Consensus 625 Dl~~~~~~~~~~~~h~~~V~sl~fspd---g~~llasgs~Dg~I~vwDl~t~~~i~~~~~~~~-i~sl~~sp-~g~~lla 699 (837)
|...... +..+..|..+|..++|.+. ...++++-....+|.+|+..+|+....+..... ..|+.+.| +.+++..
T Consensus 95 d~~~~s~-~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPfd~rh~~~ 173 (1062)
T KOG1912|consen 95 DFVLASV-INWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEILSCFRVDPFDSRHFCV 173 (1062)
T ss_pred Eehhhhh-hhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCCcceeeeeeCCCCcceEEE
Confidence 9997653 6777888899999999763 335666666678999999999999988876554 45688888 4566777
Q ss_pred EEcCCeEEEEECCC-------CeEEEEEcCCCC----------------C---------EEEEEEcCCCCE-EEEEeCCe
Q 003236 700 AAIENYISILDVET-------QVCRLKLQGHKN----------------Q---------VHSVCWNTSGEY-LASVSDEL 746 (837)
Q Consensus 700 gs~dg~I~iwDl~s-------~~~~~~l~~h~~----------------~---------V~sl~~spdg~~-LasgsDg~ 746 (837)
.+..|.|.+.+.-. ++....-..|.+ . ...++|+|.-+. ++..-...
T Consensus 174 l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~~pre 253 (1062)
T KOG1912|consen 174 LGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNILFITFPRE 253 (1062)
T ss_pred EccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceEEEEeccc
Confidence 77778877776431 233333233322 0 012466776544 44444888
Q ss_pred EEEEEcCCCCCceeEEEeecCCCceEEEEEeCCC--CEEEEEEcCCeEEEEECCC
Q 003236 747 VRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTF--PSLLVIGCYETLELWNMTE 799 (837)
Q Consensus 747 I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fspdg--~~L~sgs~dg~I~IwDl~s 799 (837)
+.|+|+.-. .++.......+.+.-+.+-|++ ..|++.-.||.+.||-.+.
T Consensus 254 llv~dle~~---~~l~vvpier~~akfv~vlP~~~rd~LfclH~nG~ltirvrk~ 305 (1062)
T KOG1912|consen 254 LLVFDLEYE---CCLAVVPIERGGAKFVDVLPDPRRDALFCLHSNGRLTIRVRKE 305 (1062)
T ss_pred eEEEcchhh---ceeEEEEeccCCcceeEeccCCCcceEEEEecCCeEEEEEeec
Confidence 999999765 6666666666656666666655 6799999999999997654
|
|
| >PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A | Back alignment and domain information |
|---|
Probab=98.92 E-value=8e-07 Score=93.00 Aligned_cols=217 Identities=12% Similarity=0.019 Sum_probs=138.2
Q ss_pred CCCcEEEEeCCCCeEEEEeccC--CCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeEEeeccccceEEEEEcCCC
Q 003236 575 HDKKAVLWCTESFTVKSTLEEH--TQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSK 652 (837)
Q Consensus 575 ~Dg~I~VWd~~t~~~~~~l~~h--~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~sl~fspdg 652 (837)
.+|+|..||..+++.+.....- .....+. ..+++.++++++.++.|+.||..+++. +..+.. ...+...... .+
T Consensus 1 ~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~l~~~d~~tG~~-~W~~~~-~~~~~~~~~~-~~ 76 (238)
T PF13360_consen 1 DDGTLSALDPRTGKELWSYDLGPGIGGPVAT-AVPDGGRVYVASGDGNLYALDAKTGKV-LWRFDL-PGPISGAPVV-DG 76 (238)
T ss_dssp -TSEEEEEETTTTEEEEEEECSSSCSSEEET-EEEETTEEEEEETTSEEEEEETTTSEE-EEEEEC-SSCGGSGEEE-ET
T ss_pred CCCEEEEEECCCCCEEEEEECCCCCCCccce-EEEeCCEEEEEcCCCEEEEEECCCCCE-EEEeec-cccccceeee-cc
Confidence 3689999999999999777431 1222211 233567788889999999999998875 333332 2221111122 22
Q ss_pred CeEEEEEeCCCcEEEEECCCCeeeeEE-ecCC----CeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEcCCCCC-
Q 003236 653 EDLLCSCDNNSEIRYWSINNGSCAGVF-KCQS----GATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQ- 726 (837)
Q Consensus 653 ~~llasgs~Dg~I~vwDl~t~~~i~~~-~~~~----~i~sl~~sp~g~~llags~dg~I~iwDl~s~~~~~~l~~h~~~- 726 (837)
..++ .+..++.|+.+|..+|+.+... .... ..........++.++++..++.|..+|+++++.+.........
T Consensus 77 ~~v~-v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~ 155 (238)
T PF13360_consen 77 GRVY-VGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRG 155 (238)
T ss_dssp TEEE-EEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESSTT-S
T ss_pred cccc-cccceeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCCCCC
Confidence 3344 4556789999999999999884 3321 1223333334788999999999999999999998888764422
Q ss_pred ---------EEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEE
Q 003236 727 ---------VHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWN 796 (837)
Q Consensus 727 ---------V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fspdg~~L~sgs~dg~I~IwD 796 (837)
+.+-....++ .++.+. ++.+..+|+.++ +.+.... ...+.. ....++..|++++.++.|.+||
T Consensus 156 ~~~~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~d~~tg---~~~w~~~--~~~~~~-~~~~~~~~l~~~~~~~~l~~~d 228 (238)
T PF13360_consen 156 SSPISSFSDINGSPVISDG-RVYVSSGDGRVVAVDLATG---EKLWSKP--ISGIYS-LPSVDGGTLYVTSSDGRLYALD 228 (238)
T ss_dssp S--EEEETTEEEEEECCTT-EEEEECCTSSEEEEETTTT---EEEEEEC--SS-ECE-CEECCCTEEEEEETTTEEEEEE
T ss_pred CcceeeecccccceEEECC-EEEEEcCCCeEEEEECCCC---CEEEEec--CCCccC-CceeeCCEEEEEeCCCEEEEEE
Confidence 1222233345 555555 775344499988 4333222 222222 2457778888888999999999
Q ss_pred CCCCcEE
Q 003236 797 MTENKTL 803 (837)
Q Consensus 797 l~s~~~~ 803 (837)
+++++.+
T Consensus 229 ~~tG~~~ 235 (238)
T PF13360_consen 229 LKTGKVV 235 (238)
T ss_dssp TTTTEEE
T ss_pred CCCCCEE
Confidence 9999875
|
... |
| >PRK11138 outer membrane biogenesis protein BamB; Provisional | Back alignment and domain information |
|---|
Probab=98.90 E-value=8.8e-07 Score=100.64 Aligned_cols=254 Identities=11% Similarity=0.019 Sum_probs=156.6
Q ss_pred CCEEEEEECCCcEEEEeCCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeEEeeccccce---
Q 003236 567 GKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTV--- 643 (837)
Q Consensus 567 g~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V--- 643 (837)
+..+++++.++.|+.+|.++++.+............... .+..+++++.++.|+.+|..+++. +..+......+
T Consensus 120 ~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~ssP~v--~~~~v~v~~~~g~l~ald~~tG~~-~W~~~~~~~~~~~~ 196 (394)
T PRK11138 120 GGKVYIGSEKGQVYALNAEDGEVAWQTKVAGEALSRPVV--SDGLVLVHTSNGMLQALNESDGAV-KWTVNLDVPSLTLR 196 (394)
T ss_pred CCEEEEEcCCCEEEEEECCCCCCcccccCCCceecCCEE--ECCEEEEECCCCEEEEEEccCCCE-eeeecCCCCccccc
Confidence 456777888999999999999988776543221111122 245677788899999999998875 33322111100
Q ss_pred --EEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeeEEecCCC--------eeEEEEec--CCCEEEEEEcCCeEEEEEC
Q 003236 644 --MSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSG--------ATQMRFQP--RLGRILAAAIENYISILDV 711 (837)
Q Consensus 644 --~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~~~~--------i~sl~~sp--~g~~llags~dg~I~iwDl 711 (837)
.+.... +. .++.++.++.+..+|..+|+.+........ ...+..+| .++.+++++.++.+..+|.
T Consensus 197 ~~~sP~v~--~~-~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~ 273 (394)
T PRK11138 197 GESAPATA--FG-GAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDL 273 (394)
T ss_pred CCCCCEEE--CC-EEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEEC
Confidence 111111 23 344566789999999999988776543211 01111122 3567888888999999999
Q ss_pred CCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecC-CCceEEEEEeCCCCEEEEEEcC
Q 003236 712 ETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCT-GNKFHSCVFHPTFPSLLVIGCY 789 (837)
Q Consensus 712 ~s~~~~~~l~~h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~-~~~I~sv~fspdg~~L~sgs~d 789 (837)
.+++.+...... ....+.. ++..|+.++ ++.|..+|..++. .+...... .....+..+ .+..|++++.+
T Consensus 274 ~tG~~~W~~~~~--~~~~~~~--~~~~vy~~~~~g~l~ald~~tG~---~~W~~~~~~~~~~~sp~v--~~g~l~v~~~~ 344 (394)
T PRK11138 274 RSGQIVWKREYG--SVNDFAV--DGGRIYLVDQNDRVYALDTRGGV---ELWSQSDLLHRLLTAPVL--YNGYLVVGDSE 344 (394)
T ss_pred CCCCEEEeecCC--CccCcEE--ECCEEEEEcCCCeEEEEECCCCc---EEEcccccCCCcccCCEE--ECCEEEEEeCC
Confidence 999877665321 1112222 344555555 9999999998873 33322211 111222222 24578999999
Q ss_pred CeEEEEECCCCcEE-EeccCCCCee-EEEEeCCCCEEEEEECCCcEEEeC
Q 003236 790 ETLELWNMTENKTL-TLSAHDKLVS-SLAASTVNGMVASASHDKCVKIWK 837 (837)
Q Consensus 790 g~I~IwDl~s~~~~-~l~~h~~~V~-sla~spdg~~LaSgs~DG~I~IWd 837 (837)
|.|+++|..+++.+ ........+. ...+. +..|+.++.||.|+.++
T Consensus 345 G~l~~ld~~tG~~~~~~~~~~~~~~s~P~~~--~~~l~v~t~~G~l~~~~ 392 (394)
T PRK11138 345 GYLHWINREDGRFVAQQKVDSSGFLSEPVVA--DDKLLIQARDGTVYAIT 392 (394)
T ss_pred CEEEEEECCCCCEEEEEEcCCCcceeCCEEE--CCEEEEEeCCceEEEEe
Confidence 99999999999987 3322222232 22332 45788889999998764
|
|
| >KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.89 E-value=5.7e-09 Score=117.83 Aligned_cols=207 Identities=20% Similarity=0.292 Sum_probs=154.4
Q ss_pred EEEecCCCCCeEEEEEcCCC-CEEEEEECCCcEEEEeCCCC-eEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEE
Q 003236 548 FQLIPASTSKVESCHFSPDG-KLLATGGHDKKAVLWCTESF-TVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWD 625 (837)
Q Consensus 548 ~~~l~~H~~~V~sl~fSpdg-~~Lasgs~Dg~I~VWd~~t~-~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWD 625 (837)
-..+.+|+..|+.+.|.+.. ..|++++.|-.|..||+.+. ..+..+..-...-..|+|+.....+++.+....|+|||
T Consensus 107 ef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~vlasshg~~i~vwd 186 (1081)
T KOG0309|consen 107 EFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPNVLASSHGNDIFVWD 186 (1081)
T ss_pred EEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccccCceeeecccCcchhhhccCCceEEEe
Confidence 34578999999999999954 47999999999999999864 34455555556678899998666666677888999999
Q ss_pred cCCCCceeEEeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCe--eeeEEecCCCeeEEEEecCCCEEEEEE--
Q 003236 626 TENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS--CAGVFKCQSGATQMRFQPRLGRILAAA-- 701 (837)
Q Consensus 626 l~~~~~~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~--~i~~~~~~~~i~sl~~sp~g~~llags-- 701 (837)
+..+..++..+++|...|+.++|.......+.+++.|++|++||..+.. ..+.......+..-++.|-|.-.++--
T Consensus 187 ~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~vtt~~piw~~r~~Pfg~g~~~mp~~ 266 (1081)
T KOG0309|consen 187 LRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRTVTTNFPIWRGRYLPFGEGYCIMPMV 266 (1081)
T ss_pred ccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeecccccccccceeccccCcceeccccccCceeEecccc
Confidence 9999999999999999999999987666677899999999999987543 334444556677777777554333322
Q ss_pred cCCeEEEEECC---------C-CeEEEEEcCCCCCEEEEEEcCCC----------CEEEEEe-CCeEEEEEcCC
Q 003236 702 IENYISILDVE---------T-QVCRLKLQGHKNQVHSVCWNTSG----------EYLASVS-DELVRVWSIGS 754 (837)
Q Consensus 702 ~dg~I~iwDl~---------s-~~~~~~l~~h~~~V~sl~~spdg----------~~Lasgs-Dg~I~IwDl~s 754 (837)
.++.+.+++.+ + ..+++.|.+|...|...-|-..+ -.|++=+ |..+++|-+.+
T Consensus 267 G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lrlWpI~~ 340 (1081)
T KOG0309|consen 267 GGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQTLRLWPIDS 340 (1081)
T ss_pred CCeeeeeccccchhhhhccccCCcceeeecCcchHHHHHhhhhcccccCCCCccceeEEEeecCCceEeeeccH
Confidence 22344444332 2 36889999999988776664321 2466666 99999998864
|
|
| >PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [] | Back alignment and domain information |
|---|
Probab=98.86 E-value=1.4e-06 Score=107.73 Aligned_cols=236 Identities=11% Similarity=0.157 Sum_probs=158.6
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCCCeEEEE----EcCCCCceeEEeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECC
Q 003236 596 HTQWITDVRFSPSLSRLATSSADRTVRVW----DTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSIN 671 (837)
Q Consensus 596 h~~~I~~l~fspdg~~Latgs~Dg~I~IW----Dl~~~~~~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~ 671 (837)
..+.|.++.|.++...|+.+..+|.|.++ +..+.. +.....-...|.+++|+||+..++ ....+++|.+.+-.
T Consensus 74 ~~~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~~--~E~VG~vd~GI~a~~WSPD~Ella-~vT~~~~l~~mt~~ 150 (928)
T PF04762_consen 74 PNDKIVSFQYLADSESLCIALASGDIILVREDPDPDEDE--IEIVGSVDSGILAASWSPDEELLA-LVTGEGNLLLMTRD 150 (928)
T ss_pred CCCcEEEEEeccCCCcEEEEECCceEEEEEccCCCCCce--eEEEEEEcCcEEEEEECCCcCEEE-EEeCCCEEEEEecc
Confidence 45689999999999999999999999999 555433 444445567899999999987555 44446666654311
Q ss_pred ---------------CCeee--------eEE-------------------------ecCCCeeEEEEecCCCEEEEEEc-
Q 003236 672 ---------------NGSCA--------GVF-------------------------KCQSGATQMRFQPRLGRILAAAI- 702 (837)
Q Consensus 672 ---------------t~~~i--------~~~-------------------------~~~~~i~sl~~sp~g~~llags~- 702 (837)
..+.+ ..| .....-..++|-.||.++++.+.
T Consensus 151 fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRGDG~yFAVss~~ 230 (928)
T PF04762_consen 151 FDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRGDGEYFAVSSVE 230 (928)
T ss_pred ceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccccCCCceEEEECCCCcEEEEEEEE
Confidence 00000 000 01224467889999999998875
Q ss_pred --C---CeEEEEECCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEe--C--CeEEEEEcCCCCCceeEEEeecCCCceEE
Q 003236 703 --E---NYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS--D--ELVRVWSIGSGSKGECIHELSCTGNKFHS 773 (837)
Q Consensus 703 --d---g~I~iwDl~s~~~~~~l~~h~~~V~sl~~spdg~~Lasgs--D--g~I~IwDl~s~~~~~~i~~~~~~~~~I~s 773 (837)
. ..|+||+-+ |....+-..-.+--.+++|-|.|++||+.. . ..|.+|.-+.-...+....+......|..
T Consensus 231 ~~~~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfErNGLrhgeF~l~~~~~~~~v~~ 309 (928)
T PF04762_consen 231 PETGSRRVIRVYSRE-GELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFERNGLRHGEFTLRFDPEEEKVIE 309 (928)
T ss_pred cCCCceeEEEEECCC-ceEEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEecCCcEeeeEecCCCCCCceeeE
Confidence 2 478999876 554444443334445789999999999887 2 36777765443333333333345678999
Q ss_pred EEEeCCCCEEEEEEcCCeEEEEECCCCcEE---Eec-cCCCCeeEEEEeCCCC-EEEEEECCCcEEEe
Q 003236 774 CVFHPTFPSLLVIGCYETLELWNMTENKTL---TLS-AHDKLVSSLAASTVNG-MVASASHDKCVKIW 836 (837)
Q Consensus 774 v~fspdg~~L~sgs~dg~I~IwDl~s~~~~---~l~-~h~~~V~sla~spdg~-~LaSgs~DG~I~IW 836 (837)
+.|++|+..|++...|. |.+|-..+.... .+. .....+..+.|+|... .|...+.+|.+.++
T Consensus 310 l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLKqei~~~~~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~ 376 (928)
T PF04762_consen 310 LAWNSDSEILAVWLEDR-VQLWTRSNYHWYLKQEIRFSSSESVNFVKWDPEKPLRLHVLTSNGQYEIY 376 (928)
T ss_pred EEECCCCCEEEEEecCC-ceEEEeeCCEEEEEEEEEccCCCCCCceEECCCCCCEEEEEecCCcEEEE
Confidence 99999999888877554 999999887754 222 3334456699999653 56666665666544
|
|
| >KOG3914 consensus WD repeat protein WDR4 [Function unknown] | Back alignment and domain information |
|---|
Probab=98.86 E-value=3e-08 Score=106.12 Aligned_cols=164 Identities=17% Similarity=0.212 Sum_probs=114.4
Q ss_pred cccCCCeEEcccCCCceEEeecCCCCCCCCccccccccCCCeeeeEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEE
Q 003236 502 LTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVL 581 (837)
Q Consensus 502 l~~~~~~v~~Gs~D~~v~~w~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~H~~~V~sl~fSpdg~~Lasgs~Dg~I~V 581 (837)
..+..++++++..++...+|+...... +..+....++..-...|+.+..+........++....+.+
T Consensus 70 ~s~~~~llAv~~~~K~~~~f~~~~~~~-------------~~kl~~~~~v~~~~~ai~~~~~~~sv~v~dkagD~~~~di 136 (390)
T KOG3914|consen 70 TSDSGRLVAVATSSKQRAVFDYRENPK-------------GAKLLDVSCVPKRPTAISFIREDTSVLVADKAGDVYSFDI 136 (390)
T ss_pred cCCCceEEEEEeCCCceEEEEEecCCC-------------cceeeeEeecccCcceeeeeeccceEEEEeecCCceeeee
Confidence 345567888877777766665544322 1222223333334444444444433333333445556667
Q ss_pred EeCCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeEEeeccccceEEEEEcCCCCeEEEEEeC
Q 003236 582 WCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDN 661 (837)
Q Consensus 582 Wd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~sl~fspdg~~llasgs~ 661 (837)
|....+.+.-.+ +|-..+++|+|+||+++|+|+..|..|+|-.+......-..+.||...|..++..++ +.|++++.
T Consensus 137 ~s~~~~~~~~~l-GhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~--~~LlS~sG 213 (390)
T KOG3914|consen 137 LSADSGRCEPIL-GHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDN--YLLLSGSG 213 (390)
T ss_pred ecccccCcchhh-hhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccC--ceeeecCC
Confidence 766665555444 799999999999999999999999999999888655444556789999999999875 35779999
Q ss_pred CCcEEEEECCCCeeeeEEec
Q 003236 662 NSEIRYWSINNGSCAGVFKC 681 (837)
Q Consensus 662 Dg~I~vwDl~t~~~i~~~~~ 681 (837)
|++|++||+++|+++.++..
T Consensus 214 D~tlr~Wd~~sgk~L~t~dl 233 (390)
T KOG3914|consen 214 DKTLRLWDITSGKLLDTCDL 233 (390)
T ss_pred CCcEEEEecccCCcccccch
Confidence 99999999999999877664
|
|
| >KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.84 E-value=8.1e-09 Score=111.28 Aligned_cols=275 Identities=16% Similarity=0.136 Sum_probs=179.9
Q ss_pred cCCCeEEcccCCCceEEeecCCCCCCCCccccccccCCCeeeeEEEEecCCCCCeEEEEEcCCCCEEEEEEC-CCcEEEE
Q 003236 504 DMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGH-DKKAVLW 582 (837)
Q Consensus 504 ~~~~~v~~Gs~D~~v~~w~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~H~~~V~sl~fSpdg~~Lasgs~-Dg~I~VW 582 (837)
....|+.+++.|+.++.|..... .-..-+..++.|.+.|.+++.+-||.++.+++. |..++++
T Consensus 18 tka~fiiqASlDGh~KFWkKs~i----------------sGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~Kvf 81 (558)
T KOG0882|consen 18 TKAKFIIQASLDGHKKFWKKSRI----------------SGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVF 81 (558)
T ss_pred ehhheEEeeecchhhhhcCCCCc----------------cceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEE
Confidence 35578999999999999933221 112345667899999999999999999999887 9999999
Q ss_pred eCCCCeEEEEec--cCCCCeEEEEEcCC-CC-EEEEE-eCCCeEEEEEcCCCCcee-EEeeccccceEEEEEcCCCCeEE
Q 003236 583 CTESFTVKSTLE--EHTQWITDVRFSPS-LS-RLATS-SADRTVRVWDTENPDYSL-RTFTGHSTTVMSLDFHPSKEDLL 656 (837)
Q Consensus 583 d~~t~~~~~~l~--~h~~~I~~l~fspd-g~-~Latg-s~Dg~I~IWDl~~~~~~~-~~~~~h~~~V~sl~fspdg~~ll 656 (837)
|+++...+.-++ .-.+.+.++ .++. .. .|+++ -.++.|.|+|-....+.. ..-.-|..+|.++.+.+.++. +
T Consensus 82 DvEn~DminmiKL~~lPg~a~wv-~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds-~ 159 (558)
T KOG0882|consen 82 DVENFDMINMIKLVDLPGFAEWV-TSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDS-A 159 (558)
T ss_pred EeeccchhhhcccccCCCceEEe-cCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccccc-e
Confidence 998766653332 222322222 2221 11 33333 347899999977655333 444568999999999999774 4
Q ss_pred EEEeCCCcEEEEECCC------CeeeeEE----------ecCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEE
Q 003236 657 CSCDNNSEIRYWSINN------GSCAGVF----------KCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKL 720 (837)
Q Consensus 657 asgs~Dg~I~vwDl~t------~~~i~~~----------~~~~~i~sl~~sp~g~~llags~dg~I~iwDl~s~~~~~~l 720 (837)
++....|.|..|.... .+....+ +......++.|+|++..+.+.+.|..|++++.++++.+..+
T Consensus 160 vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvqei 239 (558)
T KOG0882|consen 160 VSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQEI 239 (558)
T ss_pred eeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEeccchhhhhh
Confidence 5888889999999873 2222222 22455789999999999999999999999999999888776
Q ss_pred cCCCCCEEEEEEcCCCCEEEEEeCCeEEEEEcCCCCCceeEEEeecCC-CceEEEEEeCCCCEEEEEEcCCeEEEEECCC
Q 003236 721 QGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCTG-NKFHSCVFHPTFPSLLVIGCYETLELWNMTE 799 (837)
Q Consensus 721 ~~h~~~V~sl~~spdg~~LasgsDg~I~IwDl~s~~~~~~i~~~~~~~-~~I~sv~fspdg~~L~sgs~dg~I~IwDl~s 799 (837)
..-...- .+-+... +.+-++.-+.....-+.+..++ ...+.++|...+++|+.++--| |+++++.+
T Consensus 240 DE~~t~~---~~q~ks~---------y~l~~VelgRRmaverelek~~~~~~~~~~fdes~~flly~t~~g-ikvin~~t 306 (558)
T KOG0882|consen 240 DEVLTDA---QYQPKSP---------YGLMHVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLYGTILG-IKVINLDT 306 (558)
T ss_pred hccchhh---hhccccc---------cccceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEeeccee-EEEEEeec
Confidence 5322111 1111111 1111111111101111222222 3446778999999998887765 88888888
Q ss_pred CcEEEeccCC
Q 003236 800 NKTLTLSAHD 809 (837)
Q Consensus 800 ~~~~~l~~h~ 809 (837)
+.++++.+..
T Consensus 307 n~v~ri~gk~ 316 (558)
T KOG0882|consen 307 NTVVRILGKD 316 (558)
T ss_pred CeEEEEeccc
Confidence 8877555443
|
|
| >KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=98.82 E-value=2.1e-09 Score=123.00 Aligned_cols=264 Identities=14% Similarity=0.178 Sum_probs=181.4
Q ss_pred eeeEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCC--eE
Q 003236 544 TFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADR--TV 621 (837)
Q Consensus 544 ~~~~~~~l~~H~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg--~I 621 (837)
.|+.+++|+.|+...+|++|+-+.++|++|+..|.|++|++.+|.......+|...|+.+.-+.||..+++.+.-. -.
T Consensus 1090 RFr~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~Pls 1169 (1516)
T KOG1832|consen 1090 RFRSWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLS 1169 (1516)
T ss_pred hcccchhhhccccceeeEEeecCCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCchH
Confidence 5677888999999999999999999999999999999999999999999999999999999999999887766543 46
Q ss_pred EEEEcCCCCceeEEeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeeEEec-----CCCeeEEEEecCCCE
Q 003236 622 RVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-----QSGATQMRFQPRLGR 696 (837)
Q Consensus 622 ~IWDl~~~~~~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~-----~~~i~sl~~sp~g~~ 696 (837)
.+|++.......+.|. .-.++.|+......+ .|.......+||+.++..+.++-. ...-++..|+|....
T Consensus 1170 aLW~~~s~~~~~Hsf~----ed~~vkFsn~~q~r~-~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~L 1244 (1516)
T KOG1832|consen 1170 ALWDASSTGGPRHSFD----EDKAVKFSNSLQFRA-LGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTL 1244 (1516)
T ss_pred HHhccccccCcccccc----ccceeehhhhHHHHH-hcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcce
Confidence 8999886444444444 345677775432223 344445789999999877665322 223467889998777
Q ss_pred EEEEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCeEEEEEcCCCCCceeEEEeecCCCceEEEEE
Q 003236 697 ILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVF 776 (837)
Q Consensus 697 llags~dg~I~iwDl~s~~~~~~l~~h~~~V~sl~~spdg~~LasgsDg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~f 776 (837)
|+- || .+||++....++.|......+ .-.|+|.|.-++.- -.|||+++. +.++.... -.-..+.|
T Consensus 1245 Iln---dG--vLWDvR~~~aIh~FD~ft~~~-~G~FHP~g~eVIIN----SEIwD~RTF---~lLh~VP~--Ldqc~VtF 1309 (1516)
T KOG1832|consen 1245 ILN---DG--VLWDVRIPEAIHRFDQFTDYG-GGGFHPSGNEVIIN----SEIWDMRTF---KLLHSVPS--LDQCAVTF 1309 (1516)
T ss_pred Eee---Cc--eeeeeccHHHHhhhhhheecc-cccccCCCceEEee----chhhhhHHH---HHHhcCcc--ccceEEEe
Confidence 653 33 589999887777776544222 34689999888874 468999986 33433322 12345667
Q ss_pred eCCCCEEEEEEc--C---------------CeEEEEECCCCcEEEeccCCCCeeEEEEeCCCCEEEEE
Q 003236 777 HPTFPSLLVIGC--Y---------------ETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASA 827 (837)
Q Consensus 777 spdg~~L~sgs~--d---------------g~I~IwDl~s~~~~~l~~h~~~V~sla~spdg~~LaSg 827 (837)
...|..++..-. | ...+-||..+.+.+........|..+|-++...+++.-
T Consensus 1310 NstG~VmYa~~~~~d~~sdvh~~r~k~p~fSSFRTf~a~dYs~iaTi~v~R~~~Dlct~~~D~~l~vI 1377 (1516)
T KOG1832|consen 1310 NSTGDVMYAMLNIEDVMSDVHTRRVKHPLFSSFRTFDAIDYSDIATIPVDRCLLDLCTEPTDSFLGVI 1377 (1516)
T ss_pred ccCccchhhhhhhhhhhhhhcccccccchhhhhccccccccccceeeecccchhhhhcCCccceEEEE
Confidence 777765444320 0 02333444444444444455566677777766666554
|
|
| >KOG4190 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.81 E-value=1.2e-08 Score=111.64 Aligned_cols=206 Identities=14% Similarity=0.265 Sum_probs=147.4
Q ss_pred EEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCC------ceeEEeeccccceEEEEEcCCCCeEEEEEeCCC
Q 003236 590 KSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPD------YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNS 663 (837)
Q Consensus 590 ~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~~~------~~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg 663 (837)
+..+.+|...|..++-..+.+.+++++.|++|++|.+.... .+..++..|..+|.++.|..+.. .+++| ||
T Consensus 728 L~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr-~i~Sc--D~ 804 (1034)
T KOG4190|consen 728 LCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLR-SIASC--DG 804 (1034)
T ss_pred eecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccc-eeeec--cC
Confidence 35677999999998887788899999999999999987432 24567889999999999998754 45455 89
Q ss_pred cEEEEECCCCeeeeEEe---cCCCeeEEEEecC--CCEEEEE-EcCCeEEEEECCCCeEEEEEc-----CCCCCEEEEEE
Q 003236 664 EIRYWSINNGSCAGVFK---CQSGATQMRFQPR--LGRILAA-AIENYISILDVETQVCRLKLQ-----GHKNQVHSVCW 732 (837)
Q Consensus 664 ~I~vwDl~t~~~i~~~~---~~~~i~sl~~sp~--g~~llag-s~dg~I~iwDl~s~~~~~~l~-----~h~~~V~sl~~ 732 (837)
.|.+||.--+..+.... .++.+..+...++ ...++++ +.+.+|+++|.+....+..++ +....+.+++.
T Consensus 805 giHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaV 884 (1034)
T KOG4190|consen 805 GIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAV 884 (1034)
T ss_pred cceeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEEe
Confidence 99999988777655332 1233444444343 3344455 557899999999876655554 23456889999
Q ss_pred cCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEE-EECCCCcE
Q 003236 733 NTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLEL-WNMTENKT 802 (837)
Q Consensus 733 spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fspdg~~L~sgs~dg~I~I-wDl~s~~~ 802 (837)
.+.|+.++++- .|+|.+.|.+++ +.+............++ .|....++....|.++.+ |...++..
T Consensus 885 a~~GN~lAa~LSnGci~~LDaR~G---~vINswrpmecdllqla-apsdq~L~~saldHslaVnWhaldgim 952 (1034)
T KOG4190|consen 885 ADKGNKLAAALSNGCIAILDARNG---KVINSWRPMECDLLQLA-APSDQALAQSALDHSLAVNWHALDGIM 952 (1034)
T ss_pred ccCcchhhHHhcCCcEEEEecCCC---ceeccCCcccchhhhhc-CchhHHHHhhcccceeEeeehhcCCee
Confidence 99999999886 999999999998 45554443333332222 344556777777888888 87665543
|
|
| >PRK11138 outer membrane biogenesis protein BamB; Provisional | Back alignment and domain information |
|---|
Probab=98.77 E-value=2e-06 Score=97.75 Aligned_cols=255 Identities=8% Similarity=0.061 Sum_probs=152.7
Q ss_pred CCEEEEEECCCcEEEEeCCCCeEEEEeccCCC----------CeE-EEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeEE
Q 003236 567 GKLLATGGHDKKAVLWCTESFTVKSTLEEHTQ----------WIT-DVRFSPSLSRLATSSADRTVRVWDTENPDYSLRT 635 (837)
Q Consensus 567 g~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~----------~I~-~l~fspdg~~Latgs~Dg~I~IWDl~~~~~~~~~ 635 (837)
+..+++++.++.|..+|.++++.+........ .+. .+.. ++..++.++.++.++.+|.++++..- .
T Consensus 69 ~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v--~~~~v~v~~~~g~l~ald~~tG~~~W-~ 145 (394)
T PRK11138 69 YNKVYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTV--AGGKVYIGSEKGQVYALNAEDGEVAW-Q 145 (394)
T ss_pred CCEEEEECCCCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEE--ECCEEEEEcCCCEEEEEECCCCCCcc-c
Confidence 45777778889999999999988866542210 000 1111 35577888899999999999887533 3
Q ss_pred eeccccceEE-EEEcCCCCeEEEEEeCCCcEEEEECCCCeeeeEEecCCCeeEE--EEec--CCCEEEEEEcCCeEEEEE
Q 003236 636 FTGHSTTVMS-LDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQM--RFQP--RLGRILAAAIENYISILD 710 (837)
Q Consensus 636 ~~~h~~~V~s-l~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~~~~i~sl--~~sp--~g~~llags~dg~I~iwD 710 (837)
.... ..+.+ .... + . .++.+..++.|..+|.++|+.+..+........+ ..+| .++.+++++.++.+..+|
T Consensus 146 ~~~~-~~~~ssP~v~-~-~-~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v~~~~v~~~~~~g~v~a~d 221 (394)
T PRK11138 146 TKVA-GEALSRPVVS-D-G-LVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPATAFGGAIVGGDNGRVSAVL 221 (394)
T ss_pred ccCC-CceecCCEEE-C-C-EEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCCCCCEEECCEEEEEcCCCEEEEEE
Confidence 2222 22221 1222 2 3 3445667899999999999999887653221100 0111 235678888899999999
Q ss_pred CCCCeEEEEEcCCCC-------CEEEEEEcC--CCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCC
Q 003236 711 VETQVCRLKLQGHKN-------QVHSVCWNT--SGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTF 780 (837)
Q Consensus 711 l~s~~~~~~l~~h~~-------~V~sl~~sp--dg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fspdg 780 (837)
..+++.+........ ....+..+| .+..+++++ ++.+..+|..+++ .+...... ....+. ..+
T Consensus 222 ~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~---~~W~~~~~--~~~~~~--~~~ 294 (394)
T PRK11138 222 MEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQ---IVWKREYG--SVNDFA--VDG 294 (394)
T ss_pred ccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCCC---EEEeecCC--CccCcE--EEC
Confidence 999887665432110 011111122 233444444 9999999999883 33332211 111222 245
Q ss_pred CEEEEEEcCCeEEEEECCCCcEE-EeccC-CCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 003236 781 PSLLVIGCYETLELWNMTENKTL-TLSAH-DKLVSSLAASTVNGMVASASHDKCVKIWK 837 (837)
Q Consensus 781 ~~L~sgs~dg~I~IwDl~s~~~~-~l~~h-~~~V~sla~spdg~~LaSgs~DG~I~IWd 837 (837)
..|++++.++.|+.+|..+++.+ ..... .....+..+. +.+|+.++.||.|.+.|
T Consensus 295 ~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~sp~v~--~g~l~v~~~~G~l~~ld 351 (394)
T PRK11138 295 GRIYLVDQNDRVYALDTRGGVELWSQSDLLHRLLTAPVLY--NGYLVVGDSEGYLHWIN 351 (394)
T ss_pred CEEEEEcCCCeEEEEECCCCcEEEcccccCCCcccCCEEE--CCEEEEEeCCCEEEEEE
Confidence 67889999999999999999876 22111 1122222222 45677778888887654
|
|
| >PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A | Back alignment and domain information |
|---|
Probab=98.76 E-value=3e-06 Score=88.63 Aligned_cols=211 Identities=12% Similarity=0.056 Sum_probs=133.9
Q ss_pred CCeEEEEEcCCCCceeEEeecc-ccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeeEEecCCCeeEEEEecCCCE
Q 003236 618 DRTVRVWDTENPDYSLRTFTGH-STTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGR 696 (837)
Q Consensus 618 Dg~I~IWDl~~~~~~~~~~~~h-~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~~~~i~sl~~sp~g~~ 696 (837)
+|.|..||..+++.....-.+. .....+..+ ++++.++ +++.++.|+.||..+|+.+..+.....+.... ...++.
T Consensus 2 ~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~-~~~~~v~-~~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~-~~~~~~ 78 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSYDLGPGIGGPVATAV-PDGGRVY-VASGDGNLYALDAKTGKVLWRFDLPGPISGAP-VVDGGR 78 (238)
T ss_dssp TSEEEEEETTTTEEEEEEECSSSCSSEEETEE-EETTEEE-EEETTSEEEEEETTTSEEEEEEECSSCGGSGE-EEETTE
T ss_pred CCEEEEEECCCCCEEEEEECCCCCCCccceEE-EeCCEEE-EEcCCCEEEEEECCCCCEEEEeecccccccee-eecccc
Confidence 6889999998877533332211 122221122 2334444 55789999999999999999988755544332 334577
Q ss_pred EEEEEcCCeEEEEECCCCeEEEEE-cCCC---CCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCc-
Q 003236 697 ILAAAIENYISILDVETQVCRLKL-QGHK---NQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNK- 770 (837)
Q Consensus 697 llags~dg~I~iwDl~s~~~~~~l-~~h~---~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~- 770 (837)
+++++.++.|+.+|.++++.+... .... ..........++..++++. ++.|..+|++++ +.+.........
T Consensus 79 v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG---~~~w~~~~~~~~~ 155 (238)
T PF13360_consen 79 VYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTG---KLLWKYPVGEPRG 155 (238)
T ss_dssp EEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEEEETTTT---EEEEEEESSTT-S
T ss_pred cccccceeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEeccCcEEEEecCCC---cEEEEeecCCCCC
Confidence 888888899999999999998884 3221 1122222333377777777 999999999998 555555443322
Q ss_pred ---------eEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEEEeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 003236 771 ---------FHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 837 (837)
Q Consensus 771 ---------I~sv~fspdg~~L~sgs~dg~I~IwDl~s~~~~~l~~h~~~V~sla~spdg~~LaSgs~DG~I~IWd 837 (837)
+..-.+..++ .+++++.++.+..+|+.+++.+- ......+..+ ...++..|+.++.|+.|.+||
T Consensus 156 ~~~~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~d~~tg~~~w-~~~~~~~~~~-~~~~~~~l~~~~~~~~l~~~d 228 (238)
T PF13360_consen 156 SSPISSFSDINGSPVISDG-RVYVSSGDGRVVAVDLATGEKLW-SKPISGIYSL-PSVDGGTLYVTSSDGRLYALD 228 (238)
T ss_dssp S--EEEETTEEEEEECCTT-EEEEECCTSSEEEEETTTTEEEE-EECSS-ECEC-EECCCTEEEEEETTTEEEEEE
T ss_pred CcceeeecccccceEEECC-EEEEEcCCCeEEEEECCCCCEEE-EecCCCccCC-ceeeCCEEEEEeCCCEEEEEE
Confidence 1222223344 78888888854444999999662 2223333332 346778888888999999886
|
... |
| >KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.75 E-value=2.1e-06 Score=95.16 Aligned_cols=285 Identities=15% Similarity=0.172 Sum_probs=178.0
Q ss_pred ccCCCeEEcccCCCceEEeecCCCCCCCCccccccccCCCeeeeEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEE
Q 003236 503 TDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLW 582 (837)
Q Consensus 503 ~~~~~~v~~Gs~D~~v~~w~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~H~~~V~sl~fSpdg~~Lasgs~Dg~I~VW 582 (837)
.+.+.++++-+....+..|. +....-..+|+..+|.....+.++++....-.-+.||.|++|+|.-.. ..|.||
T Consensus 258 SP~EkYLVT~s~~p~~~~~~-----d~e~~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~-~sisIy 331 (698)
T KOG2314|consen 258 SPNEKYLVTYSPEPIIVEED-----DNEGQQLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTG-NSISIY 331 (698)
T ss_pred CCccceEEEecCCccccCcc-----cCCCceEEEEEccccchhcceeccCCCccccceEEeccCCceeEEecc-ceEEEE
Confidence 44445555544443333332 122234567788888776667666555554555789999999998776 579999
Q ss_pred eCCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeC-----CCeEEEEEcCCCCceeEEeeccccceEEEEEcCCCCeEEE
Q 003236 583 CTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA-----DRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLC 657 (837)
Q Consensus 583 d~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~-----Dg~I~IWDl~~~~~~~~~~~~h~~~V~sl~fspdg~~lla 657 (837)
+..+..++..-.-.-..|....|+|.+.+||.=.. -..+.+-.+.+... +++..-|.-.=..+.|-.+|+++.+
T Consensus 332 Etpsf~lld~Kslki~gIr~FswsP~~~llAYwtpe~~~~parvtL~evPs~~~-iRt~nlfnVsDckLhWQk~gdyLcv 410 (698)
T KOG2314|consen 332 ETPSFMLLDKKSLKISGIRDFSWSPTSNLLAYWTPETNNIPARVTLMEVPSKRE-IRTKNLFNVSDCKLHWQKSGDYLCV 410 (698)
T ss_pred ecCceeeecccccCCccccCcccCCCcceEEEEcccccCCcceEEEEecCccce-eeeccceeeeccEEEeccCCcEEEE
Confidence 98875555332334467889999999888775432 13455555554332 3333333322234556666664443
Q ss_pred EEeC------C---CcEEEEECCCC-eeeeEEecCCCeeEEEEecCCCEEEEEEcC---CeEEEEECCCC----eEEEEE
Q 003236 658 SCDN------N---SEIRYWSINNG-SCAGVFKCQSGATQMRFQPRLGRILAAAIE---NYISILDVETQ----VCRLKL 720 (837)
Q Consensus 658 sgs~------D---g~I~vwDl~t~-~~i~~~~~~~~i~sl~~sp~g~~llags~d---g~I~iwDl~s~----~~~~~l 720 (837)
-... . ..+-|+.++.. -++........|...+|-|.|+.+++.+.. .++.+|.+++. ..+..+
T Consensus 411 kvdR~tK~~~~g~f~n~eIfrireKdIpve~velke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~ 490 (698)
T KOG2314|consen 411 KVDRHTKSKVKGQFSNLEIFRIREKDIPVEVVELKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKEL 490 (698)
T ss_pred EEEeeccccccceEeeEEEEEeeccCCCceeeecchheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhhhh
Confidence 2211 1 13455555543 344555667789999999999988776653 57889988732 223333
Q ss_pred cCCCCCEEEEEEcCCCCEEEEEe----CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcC------C
Q 003236 721 QGHKNQVHSVCWNTSGEYLASVS----DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCY------E 790 (837)
Q Consensus 721 ~~h~~~V~sl~~spdg~~Lasgs----Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fspdg~~L~sgs~d------g 790 (837)
. ....+.+.|+|.|.+++.+. .|.+.++|.... .+...-.......+.+.|.|.|+|++++++- .
T Consensus 491 d--k~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~a---~~k~~~~~eh~~at~veWDPtGRYvvT~ss~wrhk~d~ 565 (698)
T KOG2314|consen 491 D--KKFANTVFWSPKGRFVVVAALVSRRGDLEFYDTDYA---DLKDTASPEHFAATEVEWDPTGRYVVTSSSSWRHKVDN 565 (698)
T ss_pred c--ccccceEEEcCCCcEEEEEEecccccceEEEecchh---hhhhccCccccccccceECCCCCEEEEeeehhhhcccc
Confidence 2 34567899999999998876 578999998742 2222222334456788999999999998864 3
Q ss_pred eEEEEECCC
Q 003236 791 TLELWNMTE 799 (837)
Q Consensus 791 ~I~IwDl~s 799 (837)
.-+||+...
T Consensus 566 GYri~tfqG 574 (698)
T KOG2314|consen 566 GYRIFTFQG 574 (698)
T ss_pred ceEEEEeec
Confidence 456666544
|
|
| >PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function | Back alignment and domain information |
|---|
Probab=98.72 E-value=1.7e-05 Score=84.69 Aligned_cols=230 Identities=14% Similarity=0.115 Sum_probs=158.4
Q ss_pred eEEEEEcC-CCCEEEEEECCCc-EEEEeCCCCeEEEEeccCCCCeE--EEEEcCCCCEEEEEeC-----CCeEEEEEcCC
Q 003236 558 VESCHFSP-DGKLLATGGHDKK-AVLWCTESFTVKSTLEEHTQWIT--DVRFSPSLSRLATSSA-----DRTVRVWDTEN 628 (837)
Q Consensus 558 V~sl~fSp-dg~~Lasgs~Dg~-I~VWd~~t~~~~~~l~~h~~~I~--~l~fspdg~~Latgs~-----Dg~I~IWDl~~ 628 (837)
...++.+| ++..++.+-.-|+ ..+||..+++....+....+.-. .-+|++||++|++.-. .|.|-|||...
T Consensus 7 gH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~~ 86 (305)
T PF07433_consen 7 GHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAAR 86 (305)
T ss_pred ccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECcC
Confidence 34678888 5667777877765 67899999998887765444322 4679999999998744 58999999995
Q ss_pred CCceeEEeeccccceEEEEEcCCCCeEEEEEe-----------------CCCcEEEEECCCCeeeeEEec-----CCCee
Q 003236 629 PDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCD-----------------NNSEIRYWSINNGSCAGVFKC-----QSGAT 686 (837)
Q Consensus 629 ~~~~~~~~~~h~~~V~sl~fspdg~~llasgs-----------------~Dg~I~vwDl~t~~~i~~~~~-----~~~i~ 686 (837)
.-..+..+..|.-.-..+.+.||++.+++.-+ .+-.+.+.|..+|+.+..... ...+.
T Consensus 87 ~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSiR 166 (305)
T PF07433_consen 87 GYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQLSIR 166 (305)
T ss_pred CcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCcccccccee
Confidence 55567788888877888999999977765432 123566778888888877554 23588
Q ss_pred EEEEecCCCEEEEEEcCC-------eEEEEECCCCeEEEEEc-------CCCCCEEEEEEcCCCCEEEEEe--CCeEEEE
Q 003236 687 QMRFQPRLGRILAAAIEN-------YISILDVETQVCRLKLQ-------GHKNQVHSVCWNTSGEYLASVS--DELVRVW 750 (837)
Q Consensus 687 sl~~sp~g~~llags~dg-------~I~iwDl~s~~~~~~l~-------~h~~~V~sl~~spdg~~Lasgs--Dg~I~Iw 750 (837)
.+++..+|..++..-..+ -|.+++.... +..+. .....|-+|+++.++.++++++ .+.+.+|
T Consensus 167 HLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~~--~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~ 244 (305)
T PF07433_consen 167 HLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGGA--LRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAVW 244 (305)
T ss_pred eEEecCCCcEEEEEecCCCCCccCCeEEEEcCCCc--ceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCEEEEE
Confidence 899999977666655443 2444444332 22221 2346899999999999998888 7799999
Q ss_pred EcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEE
Q 003236 751 SIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWN 796 (837)
Q Consensus 751 Dl~s~~~~~~i~~~~~~~~~I~sv~fspdg~~L~sgs~dg~I~IwD 796 (837)
|..++ ..+.... -..+..++..+++ +++.+..|.+...+
T Consensus 245 d~~tg---~~~~~~~--l~D~cGva~~~~~--f~~ssG~G~~~~~~ 283 (305)
T PF07433_consen 245 DAATG---RLLGSVP--LPDACGVAPTDDG--FLVSSGQGQLIRLS 283 (305)
T ss_pred ECCCC---CEeeccc--cCceeeeeecCCc--eEEeCCCccEEEcc
Confidence 99988 4444332 2334555555555 55555555544433
|
|
| >PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=98.71 E-value=8.3e-06 Score=91.26 Aligned_cols=259 Identities=14% Similarity=0.118 Sum_probs=155.6
Q ss_pred cCCCCEEEEEE---------CCCcEEEEeCCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeE
Q 003236 564 SPDGKLLATGG---------HDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLR 634 (837)
Q Consensus 564 Spdg~~Lasgs---------~Dg~I~VWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~~~~~~~ 634 (837)
|||+++++... ..+.+.|||+++++....... ...+....|+|+|+.|+... ++.|++++..++.....
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l~~~-~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~~l 78 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPLTPP-PPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQETQL 78 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEESS-E-ETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEEES
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEECcCC-ccccccceeecCCCeeEEEe-cCceEEEECCCCCeEEe
Confidence 68888877742 246789999999766654443 67789999999999999885 67899999876643222
Q ss_pred Eeecc----------------ccceEEEEEcCCCCeEEEEEeCCCc----------------------------------
Q 003236 635 TFTGH----------------STTVMSLDFHPSKEDLLCSCDNNSE---------------------------------- 664 (837)
Q Consensus 635 ~~~~h----------------~~~V~sl~fspdg~~llasgs~Dg~---------------------------------- 664 (837)
+..+. -+.-..+.|+||+..+++.--.+..
T Consensus 79 T~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v 158 (353)
T PF00930_consen 79 TTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRV 158 (353)
T ss_dssp ES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EE
T ss_pred ccccceeEEcCccceeccccccccccceEECCCCCEEEEEEECCcCCceEEeeccCCccccCCcccccccCCCCCcCCce
Confidence 22220 1123568899999887765443333
Q ss_pred -EEEEECCCCeeeeEE-e-----cCCCeeEEEEecCCCEEEEEEcC-----CeEEEEECCCCeEEEEEcC-CCCCE---E
Q 003236 665 -IRYWSINNGSCAGVF-K-----CQSGATQMRFQPRLGRILAAAIE-----NYISILDVETQVCRLKLQG-HKNQV---H 728 (837)
Q Consensus 665 -I~vwDl~t~~~i~~~-~-----~~~~i~sl~~sp~g~~llags~d-----g~I~iwDl~s~~~~~~l~~-h~~~V---~ 728 (837)
+.|+|+.+++....- . ...-+..+.|.+++..+++.-.+ -.+.++|..++.+...+.. ....| .
T Consensus 159 ~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~ 238 (353)
T PF00930_consen 159 SLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYD 238 (353)
T ss_dssp EEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSS
T ss_pred EEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeec
Confidence 334455444432111 1 11236778899988855554432 2577788877644333222 23333 2
Q ss_pred EEEEc-CCCCEEEEEe--CC--eEEEEEcCCCCCceeEEEeecCCCceEE-EEEeCCCCEEEEEEcC-----CeEEEEEC
Q 003236 729 SVCWN-TSGEYLASVS--DE--LVRVWSIGSGSKGECIHELSCTGNKFHS-CVFHPTFPSLLVIGCY-----ETLELWNM 797 (837)
Q Consensus 729 sl~~s-pdg~~Lasgs--Dg--~I~IwDl~s~~~~~~i~~~~~~~~~I~s-v~fspdg~~L~sgs~d-----g~I~IwDl 797 (837)
.+.|. +++..++..+ || .|.+++...+ ....+....-.|.. +.++++++.|+..+.. ..|+..++
T Consensus 239 ~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~----~~~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~ 314 (353)
T PF00930_consen 239 PPHFLGPDGNEFLWISERDGYRHLYLYDLDGG----KPRQLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSL 314 (353)
T ss_dssp EEEE-TTTSSEEEEEEETTSSEEEEEEETTSS----EEEESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEET
T ss_pred ccccccCCCCEEEEEEEcCCCcEEEEEccccc----ceeccccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEe
Confidence 45554 6666555444 77 5666666654 23455555566644 6788988877766553 26777788
Q ss_pred C-CCcEEEeccCCCCeeEEEEeCCCCEEEEEE
Q 003236 798 T-ENKTLTLSAHDKLVSSLAASTVNGMVASAS 828 (837)
Q Consensus 798 ~-s~~~~~l~~h~~~V~sla~spdg~~LaSgs 828 (837)
. .+....+......-..+.|||++++++..+
T Consensus 315 ~~~~~~~~LT~~~~~~~~~~~Spdg~y~v~~~ 346 (353)
T PF00930_consen 315 DSGGEPKCLTCEDGDHYSASFSPDGKYYVDTY 346 (353)
T ss_dssp TETTEEEESSTTSSTTEEEEE-TTSSEEEEEE
T ss_pred CCCCCeEeccCCCCCceEEEECCCCCEEEEEE
Confidence 8 677766665544446999999999877544
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: |
| >PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal | Back alignment and domain information |
|---|
Probab=98.71 E-value=8.3e-06 Score=84.70 Aligned_cols=227 Identities=17% Similarity=0.197 Sum_probs=133.1
Q ss_pred EEEcCCCCEEEEEECCCcEEEEeCCC--CeEEEEeccCC---CCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeEE
Q 003236 561 CHFSPDGKLLATGGHDKKAVLWCTES--FTVKSTLEEHT---QWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRT 635 (837)
Q Consensus 561 l~fSpdg~~Lasgs~Dg~I~VWd~~t--~~~~~~l~~h~---~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~~~~~~~~ 635 (837)
++.+.||++||+.- |..|.|-..++ ...+.+....+ -.=..++|+||+.+||.+...|+|++||+.... +..
T Consensus 3 ~~~~~~Gk~lAi~q-d~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g~~--lf~ 79 (282)
T PF15492_consen 3 LALSSDGKLLAILQ-DQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMGSE--LFV 79 (282)
T ss_pred eeecCCCcEEEEEe-ccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCcEEEEEcCCCeEEEEecccce--eEE
Confidence 56788999988764 66777765443 12222222222 234679999999999999999999999998533 222
Q ss_pred ee-------ccccceEEEEEcCCC-----CeEEEEEeCCCcEEEEECCC-----CeeeeEEec----CCCeeEEEEecCC
Q 003236 636 FT-------GHSTTVMSLDFHPSK-----EDLLCSCDNNSEIRYWSINN-----GSCAGVFKC----QSGATQMRFQPRL 694 (837)
Q Consensus 636 ~~-------~h~~~V~sl~fspdg-----~~llasgs~Dg~I~vwDl~t-----~~~i~~~~~----~~~i~sl~~sp~g 694 (837)
+. .....|..+.|.+-. ...|+.-..+|.++-|-+.. ......+.. ..+|.++.++|..
T Consensus 80 I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h 159 (282)
T PF15492_consen 80 IPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKH 159 (282)
T ss_pred cCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcCCC
Confidence 21 123456677776432 22344455577777776532 233334432 5689999999999
Q ss_pred CEEEEEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEcCCCCEEE--EEe-CC------eEEEEEcCCCCCceeEEEee
Q 003236 695 GRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLA--SVS-DE------LVRVWSIGSGSKGECIHELS 765 (837)
Q Consensus 695 ~~llags~dg~I~iwDl~s~~~~~~l~~h~~~V~sl~~spdg~~La--sgs-Dg------~I~IwDl~s~~~~~~i~~~~ 765 (837)
+.|++|+.... +++. -+.....+++-..-.+..+.. +.. |+ +..+|.+-+. .......
T Consensus 160 ~LLlVgG~~~~------~~~~----s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~---~~fs~~~ 226 (282)
T PF15492_consen 160 RLLLVGGCEQN------QDGM----SKASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIPSF---KFFSRQG 226 (282)
T ss_pred CEEEEeccCCC------CCcc----ccccccCceEEEEcCCCCcEEEccccCccccccccccceeeccce---eeeeccc
Confidence 98888876432 0000 001111222222211111111 111 11 1123332221 1222223
Q ss_pred cCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE
Q 003236 766 CTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL 803 (837)
Q Consensus 766 ~~~~~I~sv~fspdg~~L~sgs~dg~I~IwDl~s~~~~ 803 (837)
.....|..+.++|||..|++...+|.|.+|++.+-+..
T Consensus 227 ~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~~~ 264 (282)
T PF15492_consen 227 QEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLRLQ 264 (282)
T ss_pred cCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcchhh
Confidence 34678999999999999999999999999999887655
|
|
| >KOG4532 consensus WD40-like repeat containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.67 E-value=2.8e-06 Score=86.68 Aligned_cols=242 Identities=11% Similarity=0.052 Sum_probs=158.5
Q ss_pred cccCCCccccCCCeEEcccCCCceEEeecCCCCCCCCccccccccCCCeeeeEEEEecCCCCCeEEEEEcCCC-CEEEEE
Q 003236 495 LTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDG-KLLATG 573 (837)
Q Consensus 495 ~~~~~~~l~~~~~~v~~Gs~D~~v~~w~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~H~~~V~sl~fSpdg-~~Lasg 573 (837)
..+.+..+.....+++.|+..+...+|....... .......|...|+-+.=.-|. --+..+
T Consensus 73 ~~F~p~s~~~kc~~la~gG~~g~fd~~~~~tn~~------------------h~~~cd~snn~v~~~~r~cd~~~~~~i~ 134 (344)
T KOG4532|consen 73 MTFTPGSFINKCVTLADGGASGQFDLFACNTNDG------------------HLYQCDVSNNDVTLVKRYCDLKFPLNIA 134 (344)
T ss_pred ccccchHhhccccEEEeccccceeeeecccCccc------------------ceeeecccccchhhhhhhcccccceeec
Confidence 4445556677788899998888999985543210 112223344433322111121 235567
Q ss_pred ECCCcEEEEeCCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCcee-E-EeeccccceEEEEEcCC
Q 003236 574 GHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSL-R-TFTGHSTTVMSLDFHPS 651 (837)
Q Consensus 574 s~Dg~I~VWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~~~~~~-~-~~~~h~~~V~sl~fspd 651 (837)
+.|.++++.+++.+.....+....-.+.++++++|++++++.+....|..|.++...+.+ . .....+..-.+..|+..
T Consensus 135 sndht~k~~~~~~~s~~~~~h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~ 214 (344)
T KOG4532|consen 135 SNDHTGKTMVVSGDSNKFAVHNQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSEN 214 (344)
T ss_pred cCCcceeEEEEecCcccceeeccccceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccC
Confidence 788888888877654444443222348899999999999999999999999998654423 3 23334455677888877
Q ss_pred CCeEEEEEeCCCcEEEEECCCCeeeeEE------ecCCCeeEEEEecCCC--EEEEEEcCCeEEEEECCCCeEEEEEcC-
Q 003236 652 KEDLLCSCDNNSEIRYWSINNGSCAGVF------KCQSGATQMRFQPRLG--RILAAAIENYISILDVETQVCRLKLQG- 722 (837)
Q Consensus 652 g~~llasgs~Dg~I~vwDl~t~~~i~~~------~~~~~i~sl~~sp~g~--~llags~dg~I~iwDl~s~~~~~~l~~- 722 (837)
. ..+|++..||++.|||++........ .+.+.+..+.|++.|. .|+..-.-+.+.+.|+++++....+..
T Consensus 215 ~-~~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~i~ 293 (344)
T KOG4532|consen 215 D-LQFAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIVIP 293 (344)
T ss_pred c-ceEEEEecCCcEEEEEecccccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEEecC
Confidence 4 47889999999999999875433222 1456799999998654 344444458999999999855443322
Q ss_pred ------CCC-CEEEEEEcCCCCEEEEEeCCeEEEEEcCCC
Q 003236 723 ------HKN-QVHSVCWNTSGEYLASVSDELVRVWSIGSG 755 (837)
Q Consensus 723 ------h~~-~V~sl~~spdg~~LasgsDg~I~IwDl~s~ 755 (837)
|.. .|..-+|+.++.-+.+.++..+.-|++.+.
T Consensus 294 ~d~~~~~~tq~ifgt~f~~~n~s~~v~~e~~~ae~ni~sr 333 (344)
T KOG4532|consen 294 DDVERKHNTQHIFGTNFNNENESNDVKNELQGAEYNILSR 333 (344)
T ss_pred ccccccccccccccccccCCCcccccccchhhheeecccc
Confidence 222 377788888887777776666677776554
|
|
| >COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.64 E-value=1.8e-07 Score=96.82 Aligned_cols=233 Identities=18% Similarity=0.259 Sum_probs=147.1
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCce----eEEeeccc------------cceEEEEEcCC-CCeEEEE
Q 003236 596 HTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYS----LRTFTGHS------------TTVMSLDFHPS-KEDLLCS 658 (837)
Q Consensus 596 h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~~~~~----~~~~~~h~------------~~V~sl~fspd-g~~llas 658 (837)
..+.|+++.|...|.||++|...|.|.+|.-+....+ ...+.+|. ..|..|.|..+ +..-+..
T Consensus 25 ead~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLl 104 (460)
T COG5170 25 EADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLL 104 (460)
T ss_pred ccceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEE
Confidence 4467999999999999999999999999986653311 12233443 35778887654 3333445
Q ss_pred EeCCCcEEEEECCCCeeeeEEecCCCeeEEEEecCCCEEEEEE---------cCCeEEEEECCCCeEEEEE-cCCCCCEE
Q 003236 659 CDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAA---------IENYISILDVETQVCRLKL-QGHKNQVH 728 (837)
Q Consensus 659 gs~Dg~I~vwDl~t~~~i~~~~~~~~i~sl~~sp~g~~llags---------~dg~I~iwDl~s~~~~~~l-~~h~~~V~ 728 (837)
.+.|.+|++|.+.......+.. .....-.-+|.++-+.+.. .|..|..+ +.+.+ ..|...|.
T Consensus 105 stNdktiKlWKiyeknlk~va~--nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~------p~rvyaNaH~yhiN 176 (460)
T COG5170 105 STNDKTIKLWKIYEKNLKVVAE--NNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAK------PCRVYANAHPYHIN 176 (460)
T ss_pred ecCCceeeeeeeecccchhhhc--cccccccccccCCCcCCHHHhhcccccccceEEEec------cceeccccceeEee
Confidence 6679999999997543221111 1111111112111111100 01111111 11112 45888899
Q ss_pred EEEEcCCCCEEEEEeCCeEEEEEcCCCCCceeEEEeecCC-----CceEEEEEeCCC-CEEEEEEcCCeEEEEECCCCcE
Q 003236 729 SVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCTG-----NKFHSCVFHPTF-PSLLVIGCYETLELWNMTENKT 802 (837)
Q Consensus 729 sl~~spdg~~LasgsDg~I~IwDl~s~~~~~~i~~~~~~~-----~~I~sv~fspdg-~~L~sgs~dg~I~IwDl~s~~~ 802 (837)
++.|..|...++++.|-.|.+|++.-....-.+..++.|. ..|++..|+|.. ..+...++.|.|++-|++...+
T Consensus 177 SiS~NsD~et~lSaDdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~al 256 (460)
T COG5170 177 SISFNSDKETLLSADDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSAL 256 (460)
T ss_pred eeeecCchheeeeccceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhh
Confidence 9999999999999889999999987654333444444443 457888999975 4566777889999999973221
Q ss_pred E---------Ee--------ccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 003236 803 L---------TL--------SAHDKLVSSLAASTVNGMVASASHDKCVKIWK 837 (837)
Q Consensus 803 ~---------~l--------~~h~~~V~sla~spdg~~LaSgs~DG~I~IWd 837 (837)
. .+ .+....|..+.|+++|++|++-+. -+|+|||
T Consensus 257 cdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwD 307 (460)
T COG5170 257 CDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWD 307 (460)
T ss_pred ccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEe
Confidence 1 11 122356889999999999987654 5799997
|
|
| >KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.64 E-value=1.4e-06 Score=93.27 Aligned_cols=250 Identities=14% Similarity=0.148 Sum_probs=149.6
Q ss_pred EEEEeCCCCeEEEEeccCCCCeEEEEEcCCCC-EEEEEeCCCeEEEEEcCCCCceeEEeeccccceEEEEEcCCCCeEEE
Q 003236 579 AVLWCTESFTVKSTLEEHTQWITDVRFSPSLS-RLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLC 657 (837)
Q Consensus 579 I~VWd~~t~~~~~~l~~h~~~I~~l~fspdg~-~Latgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~sl~fspdg~~lla 657 (837)
|++.+..+.+....+..|...|.+++|+|..+ ++..++.+.+|+|.|+++.. .+..+..+ ..+++++|+-+..++++
T Consensus 175 v~~l~~~~fkssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~-~vssy~a~-~~~wSC~wDlde~h~IY 252 (463)
T KOG1645|consen 175 VQKLESHDFKSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSC-VVSSYIAY-NQIWSCCWDLDERHVIY 252 (463)
T ss_pred eEEeccCCcchhhcccccchhhhhhccCccccceeeeeccCceEEEEecccce-eeeheecc-CCceeeeeccCCcceeE
Confidence 77777777777777888999999999999766 78899999999999999854 46677766 88999999999999999
Q ss_pred EEeCCCcEEEEECCCCeeee-EEec---CCCeeEEEE------ecCCCEEEEEEcCCeEEEEECC----CCeEEEEEcCC
Q 003236 658 SCDNNSEIRYWSINNGSCAG-VFKC---QSGATQMRF------QPRLGRILAAAIENYISILDVE----TQVCRLKLQGH 723 (837)
Q Consensus 658 sgs~Dg~I~vwDl~t~~~i~-~~~~---~~~i~sl~~------sp~g~~llags~dg~I~iwDl~----s~~~~~~l~~h 723 (837)
+|..+|.|.|||++..+-.. .+.. ..+|..++. .+.++.+++...+ +..|++. ...++..+. .
T Consensus 253 aGl~nG~VlvyD~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt~--l~f~ei~~s~~~~p~vlele-~ 329 (463)
T KOG1645|consen 253 AGLQNGMVLVYDMRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALTV--LQFYEIVFSAECLPCVLELE-P 329 (463)
T ss_pred EeccCceEEEEEccCCCchHhhhhhhhccCcceeecccCccccccccceEEeeehh--hhhhhhhccccCCCcccccC-C
Confidence 99999999999998654221 1111 123333332 2334444444332 2233322 222222222 2
Q ss_pred CCCEEEEEEcCCCCEEEEEe--CC---eEEE----EEcCCCCCceeEE-EeecC-CCc------eEEEEEeCCCCEEEEE
Q 003236 724 KNQVHSVCWNTSGEYLASVS--DE---LVRV----WSIGSGSKGECIH-ELSCT-GNK------FHSCVFHPTFPSLLVI 786 (837)
Q Consensus 724 ~~~V~sl~~spdg~~Lasgs--Dg---~I~I----wDl~s~~~~~~i~-~~~~~-~~~------I~sv~fspdg~~L~sg 786 (837)
.+...++.+++-.+.++... +. .++. -|..++ ..+. .-..+ +.. -..+.-.++..+|+..
T Consensus 330 pG~cismqy~~~snh~l~tyRs~pn~p~~r~il~~~d~~dG---~pVc~~r~~~~Gs~~~kl~t~~ai~~~~~nn~iv~~ 406 (463)
T KOG1645|consen 330 PGICISMQYHGVSNHLLLTYRSNPNFPQSRFILGRIDFRDG---FPVCGKRRTYFGSKQTKLSTTQAIRAVEDNNYIVVV 406 (463)
T ss_pred CcceeeeeecCccceEEEEecCCCCCccceeeeeeeccccC---ceeeeecccccCCcccccccccceeccccccEEEEe
Confidence 34444555555444444332 11 1111 011111 1111 11111 111 1112223444555544
Q ss_pred Ec-CCeEEEEECCCCcEEEeccCCCCeeEEEEeCC--CCEEEEEECCCcEEEeC
Q 003236 787 GC-YETLELWNMTENKTLTLSAHDKLVSSLAASTV--NGMVASASHDKCVKIWK 837 (837)
Q Consensus 787 s~-dg~I~IwDl~s~~~~~l~~h~~~V~sla~spd--g~~LaSgs~DG~I~IWd 837 (837)
+. .+.+.+||..+.+.+.......+|.+++...- +.+|++-. |..++||+
T Consensus 407 gd~tn~lil~D~~s~evvQ~l~~~epv~Dicp~~~n~~syLa~LT-d~~v~Iyk 459 (463)
T KOG1645|consen 407 GDSTNELILQDPHSFEVVQTLALSEPVLDICPNDTNGSSYLALLT-DDRVHIYK 459 (463)
T ss_pred cCCcceeEEeccchhheeeecccCcceeecceeecCCcchhhhee-cceEEEEe
Confidence 43 45899999999999976677788988876543 34666664 45677764
|
|
| >KOG4714 consensus Nucleoporin [Nuclear structure] | Back alignment and domain information |
|---|
Probab=98.62 E-value=5.5e-07 Score=91.44 Aligned_cols=200 Identities=12% Similarity=0.159 Sum_probs=122.4
Q ss_pred CCeEEcccCCCceEEeecCCCCCCCCccccccccCCCeeeeEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCC
Q 003236 506 DRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTE 585 (837)
Q Consensus 506 ~~~v~~Gs~D~~v~~w~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~H~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~ 585 (837)
+..++++..+..+.++.. ++.+....|+-..+ ...+.++..|.++-.+-+.+-.+..++++..||.+.+++.+
T Consensus 47 ~~~lf~~e~~~~~ss~g~-----~r~~~~~~~~rt~~--i~~~~~~a~~sep~p~~~~s~~~t~V~~~~~dg~~~v~s~~ 119 (319)
T KOG4714|consen 47 EYILFTGETSSQIISLGK-----GRGRCISLWERDDG--IDPFKVLAKNSEIDPNDACTMTDNRVCIGYADGSLAVFSTD 119 (319)
T ss_pred hheeecccchhheeeecc-----ceEEEechhhcccC--cCceeeeeccCCCCCcccccccCCceEecCCCceEEEEech
Confidence 345566666666655521 22222233332222 23344555666665566666677789999999999999977
Q ss_pred CCe-EEEEeccCCCCeEEEEEcCCCCEEEEEeC-----CCeEEEEEcCCCCceeEEeeccccceEEEEEcCCCCeEEEEE
Q 003236 586 SFT-VKSTLEEHTQWITDVRFSPSLSRLATSSA-----DRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSC 659 (837)
Q Consensus 586 t~~-~~~~l~~h~~~I~~l~fspdg~~Latgs~-----Dg~I~IWDl~~~~~~~~~~~~h~~~V~sl~fspdg~~llasg 659 (837)
... ....+..-...-.+.++...++.|.++.. -+..++|++...+..+.... ....|.+++-+|.-..++++|
T Consensus 120 ~~~~~~~~i~~~~~~~as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~~-~~~~v~~l~~hp~qq~~v~cg 198 (319)
T KOG4714|consen 120 KDLALMSRIPSIHSGSASRKICRHGNSILSGGCGNWNAQDNFYANTLDPIKTLIPSKK-ALDAVTALCSHPAQQHLVCCG 198 (319)
T ss_pred HHHhhhhhcccccccccccceeecccEEecCCcceEeeccceeeeccccccccccccc-ccccchhhhCCcccccEEEEe
Confidence 521 11222111111122333334454444321 23456677664332222222 223499999999989999999
Q ss_pred eCCCcEEEEECCCCeeeeEE--ecCCCeeEEEEecC-CCEEEEEEcCCeEEEEECCC
Q 003236 660 DNNSEIRYWSINNGSCAGVF--KCQSGATQMRFQPR-LGRILAAAIENYISILDVET 713 (837)
Q Consensus 660 s~Dg~I~vwDl~t~~~i~~~--~~~~~i~sl~~sp~-g~~llags~dg~I~iwDl~s 713 (837)
+.||.|-+||.+.......+ .+..++..+-|+|. ...|+++++||.+..||..+
T Consensus 199 t~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 199 TDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAST 255 (319)
T ss_pred cCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCC
Confidence 99999999999987433222 24677999999994 56799999999999999875
|
|
| >PRK02888 nitrous-oxide reductase; Validated | Back alignment and domain information |
|---|
Probab=98.60 E-value=1.1e-05 Score=93.37 Aligned_cols=179 Identities=11% Similarity=0.045 Sum_probs=120.9
Q ss_pred EcCCCCeEEEEEeCCCcEEEEECCCCeeeeEEecCCCeeEEEEecCCCEEEEEEc-------------------------
Q 003236 648 FHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAI------------------------- 702 (837)
Q Consensus 648 fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~~~~i~sl~~sp~g~~llags~------------------------- 702 (837)
+.++|..+.......+.+.++|..+.+....+........+.++++++++++.+.
T Consensus 200 lpnDGk~l~~~~ey~~~vSvID~etmeV~~qV~Vdgnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni~ 279 (635)
T PRK02888 200 LPNDGKDLDDPKKYRSLFTAVDAETMEVAWQVMVDGNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNIA 279 (635)
T ss_pred cCCCCCEeecccceeEEEEEEECccceEEEEEEeCCCcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEEchH
Confidence 4456655544555567788889998888888887777788889999888887761
Q ss_pred ---------------CCeEEEEECCC----C-eEEEEEcCCCCCEEEEEEcCCCCEEEEEe--CCeEEEEEcCCCCC---
Q 003236 703 ---------------ENYISILDVET----Q-VCRLKLQGHKNQVHSVCWNTSGEYLASVS--DELVRVWSIGSGSK--- 757 (837)
Q Consensus 703 ---------------dg~I~iwDl~s----~-~~~~~l~~h~~~V~sl~~spdg~~Lasgs--Dg~I~IwDl~s~~~--- 757 (837)
++.|.++|.++ + ..+..+. -......+.++|||+++++++ +.+|.|+|+.+...
T Consensus 280 ~iea~vkdGK~~~V~gn~V~VID~~t~~~~~~~v~~yIP-VGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~ 358 (635)
T PRK02888 280 RIEEAVKAGKFKTIGGSKVPVVDGRKAANAGSALTRYVP-VPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFD 358 (635)
T ss_pred HHHHhhhCCCEEEECCCEEEEEECCccccCCcceEEEEE-CCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhh
Confidence 24577777776 2 3333333 455678899999999999888 88999999987531
Q ss_pred ------ceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCC----------CcEE-EeccCCC-----CeeEE
Q 003236 758 ------GECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTE----------NKTL-TLSAHDK-----LVSSL 815 (837)
Q Consensus 758 ------~~~i~~~~~~~~~I~sv~fspdg~~L~sgs~dg~I~IwDl~s----------~~~~-~l~~h~~-----~V~sl 815 (837)
...+.+... +..-...+|+++|....+.--|..|..||+.. ..++ ++.-|-. ....=
T Consensus 359 ~~~~~~~~vvaevev-GlGPLHTaFDg~G~aytslf~dsqv~kwn~~~a~~~~~g~~~~~v~~k~dV~y~pgh~~~~~g~ 437 (635)
T PRK02888 359 GKIKPRDAVVAEPEL-GLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEAAIRAYKGEKVDPIVQKLDVHYQPGHNHASMGE 437 (635)
T ss_pred ccCCccceEEEeecc-CCCcceEEECCCCCEEEeEeecceeEEEehHHHHHHhccccCCcceecccCCCccceeeecCCC
Confidence 012222222 33445678899998777777889999999876 2333 2333322 22222
Q ss_pred EEeCCCCEEEEEE
Q 003236 816 AASTVNGMVASAS 828 (837)
Q Consensus 816 a~spdg~~LaSgs 828 (837)
.-.+||++|++..
T Consensus 438 t~~~dgk~l~~~n 450 (635)
T PRK02888 438 TKEADGKWLVSLN 450 (635)
T ss_pred cCCCCCCEEEEcc
Confidence 3367888888764
|
|
| >PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function | Back alignment and domain information |
|---|
Probab=98.59 E-value=4.8e-05 Score=81.27 Aligned_cols=226 Identities=12% Similarity=0.088 Sum_probs=150.8
Q ss_pred CeEEEEEcC-CCCEEEEEeCCC-eEEEEEcCCCCceeEEeeccccce--EEEEEcCCCCeEEEEE----eCCCcEEEEEC
Q 003236 599 WITDVRFSP-SLSRLATSSADR-TVRVWDTENPDYSLRTFTGHSTTV--MSLDFHPSKEDLLCSC----DNNSEIRYWSI 670 (837)
Q Consensus 599 ~I~~l~fsp-dg~~Latgs~Dg-~I~IWDl~~~~~~~~~~~~h~~~V--~sl~fspdg~~llasg----s~Dg~I~vwDl 670 (837)
....++.+| ....++.+-.-| ...+||..++.... .+....+.- -.-+|++||..++++- ...|.|-|||.
T Consensus 6 RgH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~-~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~ 84 (305)
T PF07433_consen 6 RGHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQ-RLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDA 84 (305)
T ss_pred cccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceee-EEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEEC
Confidence 445677888 456666676655 56889998876532 322222211 1367999998776553 23589999999
Q ss_pred C-CCeeeeEEec-CCCeeEEEEecCCCEEEEEEc------------------CCeEEEEECCCCeEEEE--E--cCCCCC
Q 003236 671 N-NGSCAGVFKC-QSGATQMRFQPRLGRILAAAI------------------ENYISILDVETQVCRLK--L--QGHKNQ 726 (837)
Q Consensus 671 ~-t~~~i~~~~~-~~~i~sl~~sp~g~~llags~------------------dg~I~iwDl~s~~~~~~--l--~~h~~~ 726 (837)
. ....+..+.. .-+...+.+.|++..|+++.. +..+.+.|..+++.+.. + ..|...
T Consensus 85 ~~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lS 164 (305)
T PF07433_consen 85 ARGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQLS 164 (305)
T ss_pred cCCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCccccccc
Confidence 9 5666666664 335677889999988777643 22577788899987766 4 237789
Q ss_pred EEEEEEcCCCCEEEEEe-CC-------eEEEEEcCCCCCceeEEE----eecCCCceEEEEEeCCCCEEEEEEcCC-eEE
Q 003236 727 VHSVCWNTSGEYLASVS-DE-------LVRVWSIGSGSKGECIHE----LSCTGNKFHSCVFHPTFPSLLVIGCYE-TLE 793 (837)
Q Consensus 727 V~sl~~spdg~~Lasgs-Dg-------~I~IwDl~s~~~~~~i~~----~~~~~~~I~sv~fspdg~~L~sgs~dg-~I~ 793 (837)
|..+++.++|..++..- .+ .|.+++.... ...+.. ...-.+.+-+|+++.++..+++.+--+ .+.
T Consensus 165 iRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~~--~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~ 242 (305)
T PF07433_consen 165 IRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGGA--LRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVA 242 (305)
T ss_pred eeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCCCc--ceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCEEE
Confidence 99999999999888765 33 3555544332 111110 122357899999999999887777655 899
Q ss_pred EEECCCCcEEEeccCCCCeeEEEEeCCCCEEEEEEC
Q 003236 794 LWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASH 829 (837)
Q Consensus 794 IwDl~s~~~~~l~~h~~~V~sla~spdg~~LaSgs~ 829 (837)
+||..+++++....- ..+..++..+++ +++|.+.
T Consensus 243 ~~d~~tg~~~~~~~l-~D~cGva~~~~~-f~~ssG~ 276 (305)
T PF07433_consen 243 VWDAATGRLLGSVPL-PDACGVAPTDDG-FLVSSGQ 276 (305)
T ss_pred EEECCCCCEeecccc-CceeeeeecCCc-eEEeCCC
Confidence 999999998854332 235666666655 5655544
|
|
| >KOG4714 consensus Nucleoporin [Nuclear structure] | Back alignment and domain information |
|---|
Probab=98.58 E-value=6.8e-07 Score=90.79 Aligned_cols=195 Identities=13% Similarity=0.126 Sum_probs=114.4
Q ss_pred eEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEE------------EEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEE
Q 003236 558 VESCHFSPDGKLLATGGHDKKAVLWCTESFTVK------------STLEEHTQWITDVRFSPSLSRLATSSADRTVRVWD 625 (837)
Q Consensus 558 V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~~------------~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWD 625 (837)
|+.+.|+.+ ..|+++..++.+..+..-.+.++ .++..|.++-.+-+.+-.++.++++..||.+.+++
T Consensus 39 ~~~~~~v~~-~~lf~~e~~~~~ss~g~~r~~~~~~~~rt~~i~~~~~~a~~sep~p~~~~s~~~t~V~~~~~dg~~~v~s 117 (319)
T KOG4714|consen 39 LSKVSLSAE-YILFTGETSSQIISLGKGRGRCISLWERDDGIDPFKVLAKNSEIDPNDACTMTDNRVCIGYADGSLAVFS 117 (319)
T ss_pred EEEeechhh-heeecccchhheeeeccceEEEechhhcccCcCceeeeeccCCCCCcccccccCCceEecCCCceEEEEe
Confidence 556666643 35667766666655544333322 22223333322223333467799999999999999
Q ss_pred cCCCCceeEEeeccccceEEEEEcCCCCeEEEEEe-----CCCcEEEEECCCCeeee-EEecCCCeeEEEEecCCCEE-E
Q 003236 626 TENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCD-----NNSEIRYWSINNGSCAG-VFKCQSGATQMRFQPRLGRI-L 698 (837)
Q Consensus 626 l~~~~~~~~~~~~h~~~V~sl~fspdg~~llasgs-----~Dg~I~vwDl~t~~~i~-~~~~~~~i~sl~~sp~g~~l-l 698 (837)
.+........+..-...-.+.++...++ ++.++. .-+..+.|+++..+... .......+.+++-+|....+ +
T Consensus 118 ~~~~~~~~~~i~~~~~~~as~~~~~~~~-~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~~~~~~v~~l~~hp~qq~~v~ 196 (319)
T KOG4714|consen 118 TDKDLALMSRIPSIHSGSASRKICRHGN-SILSGGCGNWNAQDNFYANTLDPIKTLIPSKKALDAVTALCSHPAQQHLVC 196 (319)
T ss_pred chHHHhhhhhcccccccccccceeeccc-EEecCCcceEeeccceeeecccccccccccccccccchhhhCCcccccEEE
Confidence 8752211111111111122222333333 222221 12345566665433222 22223458899999976554 5
Q ss_pred EEEcCCeEEEEECCCCe-EEEEEcCCCCCEEEEEEcC-CCCEEEEEe-CCeEEEEEcCC
Q 003236 699 AAAIENYISILDVETQV-CRLKLQGHKNQVHSVCWNT-SGEYLASVS-DELVRVWSIGS 754 (837)
Q Consensus 699 ags~dg~I~iwDl~s~~-~~~~l~~h~~~V~sl~~sp-dg~~Lasgs-Dg~I~IwDl~s 754 (837)
+|+.||.+.+||.+... ++..+..|+.+|..+-|+| ++..|++++ ||.+--||..+
T Consensus 197 cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 197 CGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAST 255 (319)
T ss_pred EecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCC
Confidence 56678999999999873 4445678999999999998 467788888 99999999764
|
|
| >KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.58 E-value=1.7e-06 Score=92.78 Aligned_cols=246 Identities=14% Similarity=0.129 Sum_probs=153.8
Q ss_pred eEEEEecCCCCCeEEEEEcCCCC-EEEEEECCCcEEEEeCCCCeEEEEeccCCCCeEEEEEcCC-CCEEEEEeCCCeEEE
Q 003236 546 TEFQLIPASTSKVESCHFSPDGK-LLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPS-LSRLATSSADRTVRV 623 (837)
Q Consensus 546 ~~~~~l~~H~~~V~sl~fSpdg~-~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~I~~l~fspd-g~~Latgs~Dg~I~I 623 (837)
.....+.+|...|..++|||..+ +|..++.+.+|.|.|+++..++..+..| ..+++++|.-| ..+|+.|...|.|.|
T Consensus 184 kssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~IYaGl~nG~Vlv 262 (463)
T KOG1645|consen 184 KSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVIYAGLQNGMVLV 262 (463)
T ss_pred chhhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCcceeEEeccCceEEE
Confidence 33457788999999999999776 7889999999999999999999888877 78999999886 456777888999999
Q ss_pred EEcCCCCceeEEeec--cccceEEEEEcCCC-----CeEEEEEeCCCcEEEEECCC----CeeeeEEecCCCeeEEEEec
Q 003236 624 WDTENPDYSLRTFTG--HSTTVMSLDFHPSK-----EDLLCSCDNNSEIRYWSINN----GSCAGVFKCQSGATQMRFQP 692 (837)
Q Consensus 624 WDl~~~~~~~~~~~~--h~~~V~sl~fspdg-----~~llasgs~Dg~I~vwDl~t----~~~i~~~~~~~~i~sl~~sp 692 (837)
||++..+..+..+.+ ...+|..++.-+-+ ..+++.... .+..|++.- ..++..+...+...++.+.+
T Consensus 263 yD~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt--~l~f~ei~~s~~~~p~vlele~pG~cismqy~~ 340 (463)
T KOG1645|consen 263 YDMRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALT--VLQFYEIVFSAECLPCVLELEPPGICISMQYHG 340 (463)
T ss_pred EEccCCCchHhhhhhhhccCcceeecccCccccccccceEEeeeh--hhhhhhhhccccCCCcccccCCCcceeeeeecC
Confidence 999977654444433 23455555443221 224433332 245566542 22333333345566677777
Q ss_pred CCCEEEEEEcCC-------eEE-EEECCCCeEEEEEc-CC-CCCE------EEEEEcCCCCEEEEEe--CCeEEEEEcCC
Q 003236 693 RLGRILAAAIEN-------YIS-ILDVETQVCRLKLQ-GH-KNQV------HSVCWNTSGEYLASVS--DELVRVWSIGS 754 (837)
Q Consensus 693 ~g~~llags~dg-------~I~-iwDl~s~~~~~~l~-~h-~~~V------~sl~~spdg~~Lasgs--Dg~I~IwDl~s 754 (837)
..+.+++....+ .|. -.|..++..+...+ ++ .+.- ..+.-.++.++|+... .+.+.+||..+
T Consensus 341 ~snh~l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~Gs~~~kl~t~~ai~~~~~nn~iv~~gd~tn~lil~D~~s 420 (463)
T KOG1645|consen 341 VSNHLLLTYRSNPNFPQSRFILGRIDFRDGFPVCGKRRTYFGSKQTKLSTTQAIRAVEDNNYIVVVGDSTNELILQDPHS 420 (463)
T ss_pred ccceEEEEecCCCCCccceeeeeeeccccCceeeeecccccCCcccccccccceeccccccEEEEecCCcceeEEeccch
Confidence 667777665531 111 12333444333222 12 1110 1122234566676655 45899999998
Q ss_pred CCCceeEEEeecCCCceEEEEEe-CCCCEEEEEEcCCeEEEEECC
Q 003236 755 GSKGECIHELSCTGNKFHSCVFH-PTFPSLLVIGCYETLELWNMT 798 (837)
Q Consensus 755 ~~~~~~i~~~~~~~~~I~sv~fs-pdg~~L~sgs~dg~I~IwDl~ 798 (837)
. +.+.++... .+|.+++.. -++..++..-.|..++||..+
T Consensus 421 ~---evvQ~l~~~-epv~Dicp~~~n~~syLa~LTd~~v~Iyk~e 461 (463)
T KOG1645|consen 421 F---EVVQTLALS-EPVLDICPNDTNGSSYLALLTDDRVHIYKNE 461 (463)
T ss_pred h---heeeecccC-cceeecceeecCCcchhhheecceEEEEecC
Confidence 7 556665543 667666543 345445555566678887654
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=98.58 E-value=1e-05 Score=97.29 Aligned_cols=244 Identities=12% Similarity=0.150 Sum_probs=153.3
Q ss_pred CCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCC---Cc
Q 003236 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENP---DY 631 (837)
Q Consensus 555 ~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~~---~~ 631 (837)
.+.|.++.|..++.-++.+..+|.|.+.|.++.... ....-...|.+++|+||...++..+.++++.+-+-.=. +.
T Consensus 68 d~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~e-ivg~vd~GI~aaswS~Dee~l~liT~~~tll~mT~~f~~i~E~ 146 (1265)
T KOG1920|consen 68 DDEIVSVQFLADTNSICVITALGDIILVDPETLELE-IVGNVDNGISAASWSPDEELLALITGRQTLLFMTKDFEPIAEK 146 (1265)
T ss_pred CcceEEEEEecccceEEEEecCCcEEEEccccccee-eeeeccCceEEEeecCCCcEEEEEeCCcEEEEEeccccchhcc
Confidence 467999999999999999999999999988775433 33345678999999999999999998888776543210 00
Q ss_pred eeEEeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCC-CeeeeEEecCCCeeEEEEecCCCEEEEEEc----C-Ce
Q 003236 632 SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN-GSCAGVFKCQSGATQMRFQPRLGRILAAAI----E-NY 705 (837)
Q Consensus 632 ~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t-~~~i~~~~~~~~i~sl~~sp~g~~llags~----d-g~ 705 (837)
.+..-....+....+-|-.....+ -|+ .|.....+... .+.......++.-+.|.|--||.++++... + ..
T Consensus 147 ~L~~d~~~~sk~v~VGwGrkeTqf--rgs-~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~Rk 223 (1265)
T KOG1920|consen 147 PLDADDERKSKFVNVGWGRKETQF--RGS-EGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGTRK 223 (1265)
T ss_pred ccccccccccccceecccccceee--ecc-hhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCCcee
Confidence 010000011222333343221111 111 12111111111 111111223455677999999988887432 3 78
Q ss_pred EEEEECCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEe----CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCC
Q 003236 706 ISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS----DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFP 781 (837)
Q Consensus 706 I~iwDl~s~~~~~~l~~h~~~V~sl~~spdg~~Lasgs----Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fspdg~ 781 (837)
|+|||-+ +..-..-....+--.+++|-|.|.++++.. |+.|.+|.-+.-........+.....++..++|+.++.
T Consensus 224 irV~drE-g~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~hg~f~l~~p~de~~ve~L~Wns~sd 302 (1265)
T KOG1920|consen 224 IRVYDRE-GALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLRHGEFVLPFPLDEKEVEELAWNSNSD 302 (1265)
T ss_pred EEEeccc-chhhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEecCCccccccccCCcccccchheeeecCCCC
Confidence 9999987 433222222334456899999999999854 66799998665444344444555555699999999999
Q ss_pred EEEEE---EcCCeEEEEECCCCcEE
Q 003236 782 SLLVI---GCYETLELWNMTENKTL 803 (837)
Q Consensus 782 ~L~sg---s~dg~I~IwDl~s~~~~ 803 (837)
.|++. .....|++|-+.+....
T Consensus 303 iLAv~~~~~e~~~v~lwt~~NyhWY 327 (1265)
T KOG1920|consen 303 ILAVVTSNLENSLVQLWTTGNYHWY 327 (1265)
T ss_pred ceeeeecccccceEEEEEecCeEEE
Confidence 88883 33446999998876644
|
|
| >KOG3914 consensus WD repeat protein WDR4 [Function unknown] | Back alignment and domain information |
|---|
Probab=98.57 E-value=9.7e-07 Score=94.81 Aligned_cols=157 Identities=19% Similarity=0.213 Sum_probs=109.5
Q ss_pred CeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCc--eeEEeeccccceEEEEEcCCCCeEEEE--EeCCCcEEEEECCCCe
Q 003236 599 WITDVRFSPSLSRLATSSADRTVRVWDTENPDY--SLRTFTGHSTTVMSLDFHPSKEDLLCS--CDNNSEIRYWSINNGS 674 (837)
Q Consensus 599 ~I~~l~fspdg~~Latgs~Dg~I~IWDl~~~~~--~~~~~~~h~~~V~sl~fspdg~~llas--gs~Dg~I~vwDl~t~~ 674 (837)
.+..+..++++++||++..++.+.++++..... .......-...-+.+.|..+....+++ .++...+.+|....+.
T Consensus 64 a~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~~ 143 (390)
T KOG3914|consen 64 APALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCVPKRPTAISFIREDTSVLVADKAGDVYSFDILSADSGR 143 (390)
T ss_pred cccccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEeecccCcceeeeeeccceEEEEeecCCceeeeeecccccC
Confidence 344556677888888888888877777765432 111111122233444444443433322 3344556666666677
Q ss_pred eeeEEecCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEc-CCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEc
Q 003236 675 CAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQ-GHKNQVHSVCWNTSGEYLASVS-DELVRVWSI 752 (837)
Q Consensus 675 ~i~~~~~~~~i~sl~~sp~g~~llags~dg~I~iwDl~s~~~~~~l~-~h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl 752 (837)
+...+.+-+.++.++|+||+.+|+++..|..|+|-.......+..+. ||+.-|..++.-++.. |++++ |++|++||+
T Consensus 144 ~~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~~~-LlS~sGD~tlr~Wd~ 222 (390)
T KOG3914|consen 144 CEPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDNYL-LLSGSGDKTLRLWDI 222 (390)
T ss_pred cchhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccCce-eeecCCCCcEEEEec
Confidence 77777778889999999999999999999999998877655555543 6999999999976655 55555 999999999
Q ss_pred CCCC
Q 003236 753 GSGS 756 (837)
Q Consensus 753 ~s~~ 756 (837)
.+++
T Consensus 223 ~sgk 226 (390)
T KOG3914|consen 223 TSGK 226 (390)
T ss_pred ccCC
Confidence 9984
|
|
| >PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal | Back alignment and domain information |
|---|
Probab=98.52 E-value=5.4e-05 Score=78.78 Aligned_cols=188 Identities=14% Similarity=0.132 Sum_probs=111.8
Q ss_pred CeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEec-------cCCCCeEEEEEcCC------CCEEEEEeCCCeEEE
Q 003236 557 KVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLE-------EHTQWITDVRFSPS------LSRLATSSADRTVRV 623 (837)
Q Consensus 557 ~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~-------~h~~~I~~l~fspd------g~~Latgs~Dg~I~I 623 (837)
.=.-++||||+.+||.+...|+|+|||+.... +..+. .-...|..+.|.+. ...|++-..+|.++-
T Consensus 45 QWRkl~WSpD~tlLa~a~S~G~i~vfdl~g~~-lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~S 123 (282)
T PF15492_consen 45 QWRKLAWSPDCTLLAYAESTGTIRVFDLMGSE-LFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRS 123 (282)
T ss_pred hheEEEECCCCcEEEEEcCCCeEEEEecccce-eEEcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeee
Confidence 35679999999999999999999999987533 33332 12356777777653 224677778888888
Q ss_pred EEcCCC---C-ceeEEe---eccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeeEEecCCCeeEEEEecCCCE
Q 003236 624 WDTENP---D-YSLRTF---TGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGR 696 (837)
Q Consensus 624 WDl~~~---~-~~~~~~---~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~~~~i~sl~~sp~g~~ 696 (837)
|-+..+ + .....+ ..+...|.++.|+|....++++|.....-..+. ....++++-++..+..+
T Consensus 124 y~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~~~~~~s~----------a~~~GLtaWRiL~~~Py 193 (282)
T PF15492_consen 124 YLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHRLLLVGGCEQNQDGMSK----------ASSCGLTAWRILSDSPY 193 (282)
T ss_pred EEEEcccCCcceeeEEEEecccCCCceeEEEEcCCCCEEEEeccCCCCCcccc----------ccccCceEEEEcCCCCc
Confidence 876421 1 112222 224678999999999776665554433110100 01122232222222221
Q ss_pred EE--EEEcCC------eEEEEECCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCC
Q 003236 697 IL--AAAIEN------YISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSG 755 (837)
Q Consensus 697 ll--ags~dg------~I~iwDl~s~~~~~~l~~h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~ 755 (837)
.. +...|+ +..+|.+-+.+...........|..+..+|||.+|++.+ +|.|.+|++.+-
T Consensus 194 yk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL 261 (282)
T PF15492_consen 194 YKQVTSSEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSL 261 (282)
T ss_pred EEEccccCccccccccccceeeccceeeeeccccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcc
Confidence 11 111111 112233222222222223567899999999999999999 999999999775
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.52 E-value=1.1e-05 Score=92.10 Aligned_cols=222 Identities=12% Similarity=0.132 Sum_probs=126.5
Q ss_pred cCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeEEeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCe
Q 003236 595 EHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS 674 (837)
Q Consensus 595 ~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~ 674 (837)
...-....+.++|++++++++ .||...||...... -. ..+.-..++|...+. +++-.....|.++.--+.+
T Consensus 30 ~~~~~p~~ls~npngr~v~V~-g~geY~iyt~~~~r--~k----~~G~g~~~vw~~~n~--yAv~~~~~~I~I~kn~~~~ 100 (443)
T PF04053_consen 30 SCEIYPQSLSHNPNGRFVLVC-GDGEYEIYTALAWR--NK----AFGSGLSFVWSSRNR--YAVLESSSTIKIYKNFKNE 100 (443)
T ss_dssp E-SS--SEEEE-TTSSEEEEE-ETTEEEEEETTTTE--EE----EEEE-SEEEE-TSSE--EEEE-TTS-EEEEETTEE-
T ss_pred CCCcCCeeEEECCCCCEEEEE-cCCEEEEEEccCCc--cc----ccCceeEEEEecCcc--EEEEECCCeEEEEEcCccc
Confidence 344557899999999999885 57777788743221 11 124456788888543 4456557889997433333
Q ss_pred eeeEEecCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCeEEEEEcCC
Q 003236 675 CAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGS 754 (837)
Q Consensus 675 ~i~~~~~~~~i~sl~~sp~g~~llags~dg~I~iwDl~s~~~~~~l~~h~~~V~sl~~spdg~~LasgsDg~I~IwDl~s 754 (837)
....+..+..+..+.. |. ++....++.|.+||+.+++.+..+... .|..|.|++++.+++..++..+.|++...
T Consensus 101 ~~k~i~~~~~~~~If~---G~-LL~~~~~~~i~~yDw~~~~~i~~i~v~--~vk~V~Ws~~g~~val~t~~~i~il~~~~ 174 (443)
T PF04053_consen 101 VVKSIKLPFSVEKIFG---GN-LLGVKSSDFICFYDWETGKLIRRIDVS--AVKYVIWSDDGELVALVTKDSIYILKYNL 174 (443)
T ss_dssp TT-----SS-EEEEE----SS-SEEEEETTEEEEE-TTT--EEEEESS---E-EEEEE-TTSSEEEEE-S-SEEEEEE-H
T ss_pred cceEEcCCcccceEEc---Cc-EEEEECCCCEEEEEhhHcceeeEEecC--CCcEEEEECCCCEEEEEeCCeEEEEEecc
Confidence 3345554444444443 44 444455569999999999999998743 48999999999999999988888887653
Q ss_pred C--------CCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEEEeccCCCCeeEEEEeCCCCEEEE
Q 003236 755 G--------SKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVAS 826 (837)
Q Consensus 755 ~--------~~~~~i~~~~~~~~~I~sv~fspdg~~L~sgs~dg~I~IwDl~s~~~~~l~~h~~~V~sla~spdg~~LaS 826 (837)
. .....+..+......|.+.+|..+ .++..+.. .|+. +..|+...+..-+.++.=+.+.+..+.|+.
T Consensus 175 ~~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~d--~fiYtT~~-~lkY--l~~Ge~~~i~~ld~~~yllgy~~~~~~ly~ 249 (443)
T PF04053_consen 175 EAVAAIPEEGVEDAFELIHEISERIKSGCWVED--CFIYTTSN-HLKY--LVNGETGIIAHLDKPLYLLGYLPKENRLYL 249 (443)
T ss_dssp HHHHHBTTTB-GGGEEEEEEE-S--SEEEEETT--EEEEE-TT-EEEE--EETTEEEEEEE-SS--EEEEEETTTTEEEE
T ss_pred hhcccccccCchhceEEEEEecceeEEEEEEcC--EEEEEcCC-eEEE--EEcCCcceEEEcCCceEEEEEEccCCEEEE
Confidence 2 001133333333678889999887 44444444 7766 556666665555677888888887788999
Q ss_pred EECCCcEEEe
Q 003236 827 ASHDKCVKIW 836 (837)
Q Consensus 827 gs~DG~I~IW 836 (837)
...|+.|..+
T Consensus 250 ~Dr~~~v~~~ 259 (443)
T PF04053_consen 250 IDRDGNVISY 259 (443)
T ss_dssp E-TT--EEEE
T ss_pred EECCCCEEEE
Confidence 9999888764
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=98.49 E-value=0.00032 Score=80.21 Aligned_cols=243 Identities=14% Similarity=0.096 Sum_probs=140.5
Q ss_pred eEEEEEcCCCCEEEEE-ECCC----cEEEEeCCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCC-----------eE
Q 003236 558 VESCHFSPDGKLLATG-GHDK----KAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADR-----------TV 621 (837)
Q Consensus 558 V~sl~fSpdg~~Lasg-s~Dg----~I~VWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg-----------~I 621 (837)
+..+++||||++||.+ +..| .|+|+|+++++.+...-... ....+.|.++++.|+....+. .|
T Consensus 126 ~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~-~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v 204 (414)
T PF02897_consen 126 LGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENP-KFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQV 204 (414)
T ss_dssp EEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEE-ESEEEEECTTSSEEEEEECSTTTSS-CCGCCEEE
T ss_pred eeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCccccc-ccceEEEeCCCCEEEEEEeCcccccccCCCCcEE
Confidence 4467899999998876 3333 59999999998775321111 123499999988877665433 38
Q ss_pred EEEEcCCCCce-eEEeeccccc--eEEEEEcCCCCeEEEEEeCCC---cEEEEECCCC-----eeeeEEecCCCeeEEEE
Q 003236 622 RVWDTENPDYS-LRTFTGHSTT--VMSLDFHPSKEDLLCSCDNNS---EIRYWSINNG-----SCAGVFKCQSGATQMRF 690 (837)
Q Consensus 622 ~IWDl~~~~~~-~~~~~~h~~~--V~sl~fspdg~~llasgs~Dg---~I~vwDl~t~-----~~i~~~~~~~~i~sl~~ 690 (837)
+.|++.+.... ...+...... ...+..++++..+++...... .|++.|+..+ ...........+....-
T Consensus 205 ~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~~~v~ 284 (414)
T PF02897_consen 205 YRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDGVEYYVD 284 (414)
T ss_dssp EEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-EEEEE
T ss_pred EEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCceEEEEE
Confidence 88888876543 2344433332 568889999998887665443 5888898875 33333333334443333
Q ss_pred ecCCCEEEEEEc----CCeEEEEECCCCe---EEEEEcCCCCCEEEEEEcCCCCEEEEEe--CC--eEEEEEcCCCCCce
Q 003236 691 QPRLGRILAAAI----ENYISILDVETQV---CRLKLQGHKNQVHSVCWNTSGEYLASVS--DE--LVRVWSIGSGSKGE 759 (837)
Q Consensus 691 sp~g~~llags~----dg~I~iwDl~s~~---~~~~l~~h~~~V~sl~~spdg~~Lasgs--Dg--~I~IwDl~s~~~~~ 759 (837)
+. +..++..+. .+.|...++.... ....+..+...+.-..+...+.+|+... ++ .|+++++..+ .
T Consensus 285 ~~-~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~Lvl~~~~~~~~~l~v~~~~~~---~ 360 (414)
T PF02897_consen 285 HH-GDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLFKDYLVLSYRENGSSRLRVYDLDDG---K 360 (414)
T ss_dssp EE-TTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEETTEEEEEEEETTEEEEEEEETT-T---E
T ss_pred cc-CCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEEECCEEEEEEEECCccEEEEEECCCC---c
Confidence 33 444444433 3578888888764 2334555655433333334455555554 55 7999999822 2
Q ss_pred eEEEee-cCCCceEEEEEeCCCCEEEEEEcC----CeEEEEECCCCcEEEe
Q 003236 760 CIHELS-CTGNKFHSCVFHPTFPSLLVIGCY----ETLELWNMTENKTLTL 805 (837)
Q Consensus 760 ~i~~~~-~~~~~I~sv~fspdg~~L~sgs~d----g~I~IwDl~s~~~~~l 805 (837)
....+. ...+.|..+...++++.+...-.. .+|+.||+.+++...+
T Consensus 361 ~~~~~~~p~~g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~~~~~ 411 (414)
T PF02897_consen 361 ESREIPLPEAGSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATGELTLL 411 (414)
T ss_dssp EEEEEESSSSSEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTTTCEEEE
T ss_pred EEeeecCCcceEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCCCEEEE
Confidence 333322 233445666666666554443322 3899999999887643
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A .... |
| >KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=98.49 E-value=7.8e-08 Score=110.53 Aligned_cols=200 Identities=17% Similarity=0.268 Sum_probs=149.5
Q ss_pred CeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeEEeeccccceEEEEEcCCCCeEEEEEeCCC-cE
Q 003236 587 FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNS-EI 665 (837)
Q Consensus 587 ~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg-~I 665 (837)
.+...+|..|+...+|++|+-+.++|++|+..|.|++|++.++.. ...+.+|...|+-+.-+.+|..++.+++... -.
T Consensus 1091 Fr~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~-e~s~ncH~SavT~vePs~dgs~~Ltsss~S~Pls 1169 (1516)
T KOG1832|consen 1091 FRSWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSM-EESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLS 1169 (1516)
T ss_pred cccchhhhccccceeeEEeecCCceEEeeeccceEEEEEccCccc-cccccccccccccccccCCcceeeeeccccCchH
Confidence 455677888999999999999999999999999999999998764 6778889999999999999998886666554 57
Q ss_pred EEEECCC-CeeeeEEecCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEE-cC---CCCCEEEEEEcCCCCEEE
Q 003236 666 RYWSINN-GSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKL-QG---HKNQVHSVCWNTSGEYLA 740 (837)
Q Consensus 666 ~vwDl~t-~~~i~~~~~~~~i~sl~~sp~g~~llags~dg~I~iwDl~s~~~~~~l-~~---h~~~V~sl~~spdg~~La 740 (837)
.+|++.. +...+.| .+-.++.|+.....-+.|+......+||+.++.++.++ .+ ....-++..|+|+..+|+
T Consensus 1170 aLW~~~s~~~~~Hsf---~ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~LIl 1246 (1516)
T KOG1832|consen 1170 ALWDASSTGGPRHSF---DEDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTLIL 1246 (1516)
T ss_pred HHhccccccCccccc---cccceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcceEe
Confidence 7899864 3344444 34567778776555566777788999999998765552 22 222336789999998876
Q ss_pred EEeCCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE
Q 003236 741 SVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL 803 (837)
Q Consensus 741 sgsDg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fspdg~~L~sgs~dg~I~IwDl~s~~~~ 803 (837)
- || .+||++.. ..++.|.... ....-.|+|.|..+++-+ .|||+++.+.+
T Consensus 1247 n--dG--vLWDvR~~---~aIh~FD~ft-~~~~G~FHP~g~eVIINS-----EIwD~RTF~lL 1296 (1516)
T KOG1832|consen 1247 N--DG--VLWDVRIP---EAIHRFDQFT-DYGGGGFHPSGNEVIINS-----EIWDMRTFKLL 1296 (1516)
T ss_pred e--Cc--eeeeeccH---HHHhhhhhhe-ecccccccCCCceEEeec-----hhhhhHHHHHH
Confidence 4 55 48999877 4555554332 222347999998887754 58999887765
|
|
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.49 E-value=4.2e-06 Score=96.72 Aligned_cols=182 Identities=13% Similarity=0.212 Sum_probs=132.0
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeEEeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeee
Q 003236 597 TQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCA 676 (837)
Q Consensus 597 ~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i 676 (837)
.+.++|++++ ++.|+.|+.+|.|++++....- .+...|... ..+|. ++++|+.||+|.|..+-+.+..
T Consensus 39 ~D~is~~av~--~~~~~~GtH~g~v~~~~~~~~~---~~~~~~s~~------~~~Ge-y~asCS~DGkv~I~sl~~~~~~ 106 (846)
T KOG2066|consen 39 NDAISCCAVH--DKFFALGTHRGAVYLTTCQGNP---KTNFDHSSS------ILEGE-YVASCSDDGKVVIGSLFTDDEI 106 (846)
T ss_pred hhHHHHHHhh--cceeeeccccceEEEEecCCcc---ccccccccc------ccCCc-eEEEecCCCcEEEeeccCCccc
Confidence 4567777775 5789999999999999987531 333444433 34454 6779999999999999999999
Q ss_pred eEEecCCCeeEEEEecC-----CCEEEEEEcCCeEEEEECCC--CeEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCeEEE
Q 003236 677 GVFKCQSGATQMRFQPR-----LGRILAAAIENYISILDVET--QVCRLKLQGHKNQVHSVCWNTSGEYLASVSDELVRV 749 (837)
Q Consensus 677 ~~~~~~~~i~sl~~sp~-----g~~llags~dg~I~iwDl~s--~~~~~~l~~h~~~V~sl~~spdg~~LasgsDg~I~I 749 (837)
..+....++.+++++|+ .+.+++|+..| +.++.-+- .+....+....++|.+++|. |.+||-++|-.|+|
T Consensus 107 ~~~df~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W~--g~lIAWand~Gv~v 183 (846)
T KOG2066|consen 107 TQYDFKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKWR--GNLIAWANDDGVKV 183 (846)
T ss_pred eeEecCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccceEEEEec--CcEEEEecCCCcEE
Confidence 99999999999999997 56789998888 77775431 12222455677899999995 88999999878999
Q ss_pred EEcCCCCCceeEEEeecCCCc------eEEEEEeCCCCEEEEEEcCCeEEEEECC
Q 003236 750 WSIGSGSKGECIHELSCTGNK------FHSCVFHPTFPSLLVIGCYETLELWNMT 798 (837)
Q Consensus 750 wDl~s~~~~~~i~~~~~~~~~------I~sv~fspdg~~L~sgs~dg~I~IwDl~ 798 (837)
||+.+. ..+..+...... ...+.|.++.+ ++.|...+|+|..++
T Consensus 184 yd~~~~---~~l~~i~~p~~~~R~e~fpphl~W~~~~~--LVIGW~d~v~i~~I~ 233 (846)
T KOG2066|consen 184 YDTPTR---QRLTNIPPPSQSVRPELFPPHLHWQDEDR--LVIGWGDSVKICSIK 233 (846)
T ss_pred Eecccc---ceeeccCCCCCCCCcccCCCceEecCCCe--EEEecCCeEEEEEEe
Confidence 999887 333333322222 24466776654 444555578888876
|
|
| >PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A | Back alignment and domain information |
|---|
Probab=98.48 E-value=0.00029 Score=77.62 Aligned_cols=269 Identities=14% Similarity=0.086 Sum_probs=140.4
Q ss_pred EEEcCCCCEEEEEE-CCC--cEEEEeCCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeEEee
Q 003236 561 CHFSPDGKLLATGG-HDK--KAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFT 637 (837)
Q Consensus 561 l~fSpdg~~Lasgs-~Dg--~I~VWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~~~~~~~~~~ 637 (837)
=+|.+||+.|+.++ .|| .+++.|+.+++...-..+.........++++++.|+....+..|+..|+.+.+. ...+.
T Consensus 41 ~~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~-~~vy~ 119 (386)
T PF14583_consen 41 NCFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRALYYVKNGRSLRRVDLDTLEE-RVVYE 119 (386)
T ss_dssp --B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEEEEEETTTEEEEEETTT--E-EEEEE
T ss_pred CCcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecCCCeEEEEECCCeEEEEECCcCcE-EEEEE
Confidence 36788997665554 455 566668888877655443223333566778888887776677899999998664 34455
Q ss_pred ccccceEEEEEc--CCCCeEEEEEe----------------------CCCcEEEEECCCCeeeeEEecCCCeeEEEEecC
Q 003236 638 GHSTTVMSLDFH--PSKEDLLCSCD----------------------NNSEIRYWSINNGSCAGVFKCQSGATQMRFQPR 693 (837)
Q Consensus 638 ~h~~~V~sl~fs--pdg~~llasgs----------------------~Dg~I~vwDl~t~~~i~~~~~~~~i~sl~~sp~ 693 (837)
.....+-...|. .++. .++..- ..+.|...|+.+|+....+....-+..+.|+|.
T Consensus 120 ~p~~~~g~gt~v~n~d~t-~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~~~~wlgH~~fsP~ 198 (386)
T PF14583_consen 120 VPDDWKGYGTWVANSDCT-KLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFEDTDWLGHVQFSPT 198 (386)
T ss_dssp --TTEEEEEEEEE-TTSS-EEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEEEESS-EEEEEEETT
T ss_pred CCcccccccceeeCCCcc-EEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEecCccccCcccCCC
Confidence 455555445554 3333 332221 123577788999998888888888999999998
Q ss_pred CCEEEEEEcCC-----eEEEEECCC-CeEEEEEcCCC--CCEEEEEEcCCCCEEEEEe---C---CeEEEEEcCCCCCce
Q 003236 694 LGRILAAAIEN-----YISILDVET-QVCRLKLQGHK--NQVHSVCWNTSGEYLASVS---D---ELVRVWSIGSGSKGE 759 (837)
Q Consensus 694 g~~llags~dg-----~I~iwDl~s-~~~~~~l~~h~--~~V~sl~~spdg~~Lasgs---D---g~I~IwDl~s~~~~~ 759 (837)
...+++-|-+| .-+||-+++ +.....+..+. ..+..=-|.+||..|.-.+ . ..|.-+|+.++.. .
T Consensus 199 dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~DG~~i~y~~~~~~~~~~~i~~~d~~t~~~-~ 277 (386)
T PF14583_consen 199 DPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWVPDGSTIWYDSYTPGGQDFWIAGYDPDTGER-R 277 (386)
T ss_dssp EEEEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-TTSS-EEEEEEETTT--EEEEEE-TTT--E-E
T ss_pred CCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcccccccccCCCCEEEEEeecCCCCceEEEeeCCCCCCc-e
Confidence 88877777654 124554432 33333333332 2344557899998776533 2 2577778877643 1
Q ss_pred eEEEeecCCCceEEEEEeCCCCEEEEEEcCC----------------eEEEEECCCCcEEEeccCCC---------C--e
Q 003236 760 CIHELSCTGNKFHSCVFHPTFPSLLVIGCYE----------------TLELWNMTENKTLTLSAHDK---------L--V 812 (837)
Q Consensus 760 ~i~~~~~~~~~I~sv~fspdg~~L~sgs~dg----------------~I~IwDl~s~~~~~l~~h~~---------~--V 812 (837)
.+... .....+..++||..++-=++|. -|+++++..+....+..|.. . =
T Consensus 278 ~~~~~----p~~~H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~i~~~~~~~~~~~~l~~h~~sw~v~~~~~q~~h 353 (386)
T PF14583_consen 278 RLMEM----PWCSHFMSSPDGKLFVGDGGDAPVDVADAGGYKIENDPWIYLFDVEAGRFRKLARHDTSWKVLDGDRQVTH 353 (386)
T ss_dssp EEEEE-----SEEEEEE-TTSSEEEEEE-------------------EEEEEETTTTEEEEEEE-------BTTBSSTT-
T ss_pred EEEeC----CceeeeEEcCCCCEEEecCCCCCccccccccceecCCcEEEEeccccCceeeeeeccCcceeecCCCccCC
Confidence 22111 2344556678888554433332 56778888877654444421 1 2
Q ss_pred eEEEEeCCCCEEEE-EECCCcEEEe
Q 003236 813 SSLAASTVNGMVAS-ASHDKCVKIW 836 (837)
Q Consensus 813 ~sla~spdg~~LaS-gs~DG~I~IW 836 (837)
-.+.|+||+++|+. +...|...||
T Consensus 354 Php~FSPDgk~VlF~Sd~~G~~~vY 378 (386)
T PF14583_consen 354 PHPSFSPDGKWVLFRSDMEGPPAVY 378 (386)
T ss_dssp ---EE-TTSSEEEEEE-TTSS-EEE
T ss_pred CCCccCCCCCEEEEECCCCCCccEE
Confidence 45799999997664 4467776665
|
|
| >COG3391 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.47 E-value=0.00018 Score=81.28 Aligned_cols=251 Identities=12% Similarity=0.132 Sum_probs=175.5
Q ss_pred EEEEeCCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEe-CCCeEEEEEcCCCCceeEEeeccccceEEEEEcCCCCeEEE
Q 003236 579 AVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSS-ADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLC 657 (837)
Q Consensus 579 I~VWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs-~Dg~I~IWDl~~~~~~~~~~~~h~~~V~sl~fspdg~~lla 657 (837)
+.+++..+......+..+. ....+...+++..++... ....+.+.+... .........-...-..+++++.+..+++
T Consensus 13 ~~v~~~~~~~~~~~~~~~~-~~~~v~~~~~g~~~~v~~~~~~~~~~~~~~~-n~~~~~~~~g~~~p~~i~v~~~~~~vyv 90 (381)
T COG3391 13 VSVINTGTNKVTAAISLGR-GPGGVAVNPDGTQVYVANSGSNDVSVIDATS-NTVTQSLSVGGVYPAGVAVNPAGNKVYV 90 (381)
T ss_pred eEEEeecccEEEEEeecCC-CCceeEEcCccCEEEEEeecCceeeeccccc-ceeeeeccCCCccccceeeCCCCCeEEE
Confidence 6666666666555554343 566778888875554443 233455555542 2111111111144567888999888888
Q ss_pred EEeCCCcEEEEECCCCeeeeEEecCCCeeEEEEecCCCEEEEEEc---CCeEEEEECCCCeEEEEEcCCCCCEEEEEEcC
Q 003236 658 SCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAI---ENYISILDVETQVCRLKLQGHKNQVHSVCWNT 734 (837)
Q Consensus 658 sgs~Dg~I~vwDl~t~~~i~~~~~~~~i~sl~~sp~g~~llags~---dg~I~iwDl~s~~~~~~l~~h~~~V~sl~~sp 734 (837)
....+..|.+.|..+.+.............++++++++.++++.. ++.+.++|..+.+.......-..+ ..++++|
T Consensus 91 ~~~~~~~v~vid~~~~~~~~~~~vG~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~~P-~~~a~~p 169 (381)
T COG3391 91 TTGDSNTVSVIDTATNTVLGSIPVGLGPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIPVGNTP-TGVAVDP 169 (381)
T ss_pred ecCCCCeEEEEcCcccceeeEeeeccCCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEecCCCc-ceEEECC
Confidence 888789999999998888888887778889999999998888776 689999999999888775544344 8999999
Q ss_pred CCCEEEEEe--CCeEEEEEcCCCCCceeEE-E---eecCCCceEEEEEeCCCCEEEEEEcCC---eEEEEECCCCcEEEe
Q 003236 735 SGEYLASVS--DELVRVWSIGSGSKGECIH-E---LSCTGNKFHSCVFHPTFPSLLVIGCYE---TLELWNMTENKTLTL 805 (837)
Q Consensus 735 dg~~Lasgs--Dg~I~IwDl~s~~~~~~i~-~---~~~~~~~I~sv~fspdg~~L~sgs~dg---~I~IwDl~s~~~~~l 805 (837)
+|..++.+. ++.|.++|..... ... . .......-..+.+++++.++++..... .+...|..++.....
T Consensus 170 ~g~~vyv~~~~~~~v~vi~~~~~~---v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~ 246 (381)
T COG3391 170 DGNKVYVTNSDDNTVSVIDTSGNS---VVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTAT 246 (381)
T ss_pred CCCeEEEEecCCCeEEEEeCCCcc---eeccccccccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEe
Confidence 999887777 8899999976652 221 1 112234456789999999887776654 899999999888754
Q ss_pred c-cCCC-CeeEEEEeCCCCEEEEEECC-CcEEE
Q 003236 806 S-AHDK-LVSSLAASTVNGMVASASHD-KCVKI 835 (837)
Q Consensus 806 ~-~h~~-~V~sla~spdg~~LaSgs~D-G~I~I 835 (837)
. .-.. ....+.++|+|+.+.+.... +.|.+
T Consensus 247 ~~~~~~~~~~~v~~~p~g~~~yv~~~~~~~V~v 279 (381)
T COG3391 247 DLPVGSGAPRGVAVDPAGKAAYVANSQGGTVSV 279 (381)
T ss_pred ccccccCCCCceeECCCCCEEEEEecCCCeEEE
Confidence 2 2222 56778899999988877433 44443
|
|
| >KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=98.47 E-value=5.2e-06 Score=96.81 Aligned_cols=175 Identities=14% Similarity=0.195 Sum_probs=130.6
Q ss_pred EEEEEeCCCcEEEEECCCCeeeeEEecCC-CeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEc
Q 003236 655 LLCSCDNNSEIRYWSINNGSCAGVFKCQS-GATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWN 733 (837)
Q Consensus 655 llasgs~Dg~I~vwDl~t~~~i~~~~~~~-~i~sl~~sp~g~~llags~dg~I~iwDl~s~~~~~~l~~h~~~V~sl~~s 733 (837)
.++-|+--..+..+|+++.+..+...... ++.-++ .+++++++|...|+|.+-|.++.+.++++..|.+.|..+..
T Consensus 149 ~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR--~Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSDfDv- 225 (1118)
T KOG1275|consen 149 TLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMR--YNNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISDFDV- 225 (1118)
T ss_pred ceeecchhhheeeeecccceeeeeeeccCCceEEEE--ecCcEEEeecccceEEeecCCcCceeeeeeccccceeeeec-
Confidence 44466667788899999988888777644 444444 45678999999999999999999999999999999986655
Q ss_pred CCCCEEEEEe----------CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCC-CEEEEEEcCCeEEEEE---CCC
Q 003236 734 TSGEYLASVS----------DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTF-PSLLVIGCYETLELWN---MTE 799 (837)
Q Consensus 734 pdg~~Lasgs----------Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fspdg-~~L~sgs~dg~I~IwD---l~s 799 (837)
.|++|++|+ |..|+|||++......++ ..+.++ .-+.|+|.- ..+++++..|...+.| +.+
T Consensus 226 -~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI---~~~~~P-~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsN 300 (1118)
T KOG1275|consen 226 -QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPI---QFPYGP-QFLRFHPSLTTRLAVTSQSGQFQFVDTATLSN 300 (1118)
T ss_pred -cCCeEEEeecccccccccccchhhhhhhhhhhccCCc---ccccCc-hhhhhcccccceEEEEecccceeeccccccCC
Confidence 588888875 336999999987432222 222222 445677765 4578888899999988 333
Q ss_pred Cc--EEEeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 003236 800 NK--TLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 837 (837)
Q Consensus 800 ~~--~~~l~~h~~~V~sla~spdg~~LaSgs~DG~I~IWd 837 (837)
.. ...+......+.++++++++..+|.|..+|.|.+|-
T Consensus 301 P~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 301 PPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWA 340 (1118)
T ss_pred CccceeEEccCCCcceeEEecCCCceEEEecccCcEeeec
Confidence 32 123334455699999999999999999999999993
|
|
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.46 E-value=4.7e-06 Score=96.31 Aligned_cols=183 Identities=15% Similarity=0.187 Sum_probs=129.3
Q ss_pred CCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeE
Q 003236 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLR 634 (837)
Q Consensus 555 ~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~~~~~~~ 634 (837)
.+.|+|++++ +++|+.|+.+|.|++++.... . .+...|... ..+|.+++|||.||+|.|..+.+.+. ..
T Consensus 39 ~D~is~~av~--~~~~~~GtH~g~v~~~~~~~~-~-~~~~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~-~~ 107 (846)
T KOG2066|consen 39 NDAISCCAVH--DKFFALGTHRGAVYLTTCQGN-P-KTNFDHSSS------ILEGEYVASCSDDGKVVIGSLFTDDE-IT 107 (846)
T ss_pred hhHHHHHHhh--cceeeeccccceEEEEecCCc-c-ccccccccc------ccCCceEEEecCCCcEEEeeccCCcc-ce
Confidence 4568888887 679999999999999986543 2 333345444 55899999999999999999887664 33
Q ss_pred EeeccccceEEEEEcCC----CCeEEEEEeCCCcEEEEECC---CCeeeeEEecCCCeeEEEEecCCCEEEEEEcCCeEE
Q 003236 635 TFTGHSTTVMSLDFHPS----KEDLLCSCDNNSEIRYWSIN---NGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYIS 707 (837)
Q Consensus 635 ~~~~h~~~V~sl~fspd----g~~llasgs~Dg~I~vwDl~---t~~~i~~~~~~~~i~sl~~sp~g~~llags~dg~I~ 707 (837)
.+. ...++.+++++|+ ....+++|+..| +.++.-+ ....+..-...+.|.++.|..+ +++-..|-.|+
T Consensus 108 ~~d-f~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W~g~---lIAWand~Gv~ 182 (846)
T KOG2066|consen 108 QYD-FKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKWRGN---LIAWANDDGVK 182 (846)
T ss_pred eEe-cCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccceEEEEecCc---EEEEecCCCcE
Confidence 332 4578999999998 233566888777 7666432 2223323334678999999743 66666677799
Q ss_pred EEECCCCeEEEEEcCCCCC------EEEEEEcCCCCEEEEEeCCeEEEEEcCC
Q 003236 708 ILDVETQVCRLKLQGHKNQ------VHSVCWNTSGEYLASVSDELVRVWSIGS 754 (837)
Q Consensus 708 iwDl~s~~~~~~l~~h~~~------V~sl~~spdg~~LasgsDg~I~IwDl~s 754 (837)
|||+.+...+..+...... ...+.|.++. .|+.|-..+|+|..++.
T Consensus 183 vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~-~LVIGW~d~v~i~~I~~ 234 (846)
T KOG2066|consen 183 VYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDED-RLVIGWGDSVKICSIKK 234 (846)
T ss_pred EEeccccceeeccCCCCCCCCcccCCCceEecCCC-eEEEecCCeEEEEEEec
Confidence 9999998877776643332 2357777554 56667767799998873
|
|
| >PF08513 LisH: LisH; InterPro: IPR013720 The LisH motif is found in a large number of eukaryotic proteins, from metazoa, fungi and plants that have a wide range of functions | Back alignment and domain information |
|---|
Probab=98.45 E-value=1.9e-07 Score=62.56 Aligned_cols=27 Identities=41% Similarity=0.685 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHhc
Q 003236 10 KMLDVYIYDYLLKRKLHASAKAFQTEG 36 (837)
Q Consensus 10 ~~l~~yiydyl~k~~~~~~A~~~~~e~ 36 (837)
+.||.+|||||+++||.+||++|.+|+
T Consensus 1 ~~Ln~lI~~YL~~~Gy~~tA~~f~~Ea 27 (27)
T PF08513_consen 1 EELNQLIYDYLVENGYKETAKAFAKEA 27 (27)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHCCcHHHHHHHHhcC
Confidence 479999999999999999999999985
|
The recently solved structure of the LisH domain in the N-terminal region of LIS1 depicted it as a novel dimerization motif, and that other structural elements are likely to play an important role in dimerisation [, , ]. The LisH (lis homology) domain mediates protein dimerisation and tetramerisation. The LisH domain is found in Sif2, a component of the Set3 complex which is responsible for repressing meiotic genes. It has been shown that the LisH domain helps mediate interaction with components of the Set3 complex []. ; PDB: 2XTE_L 2XTC_B 2XTD_A 1UUJ_B. |
| >cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases | Back alignment and domain information |
|---|
Probab=98.45 E-value=7e-05 Score=87.47 Aligned_cols=258 Identities=11% Similarity=0.090 Sum_probs=150.7
Q ss_pred CCEEEEEECCCcEEEEeCCCCeEEEEeccCCC------CeE--EEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeEEeec
Q 003236 567 GKLLATGGHDKKAVLWCTESFTVKSTLEEHTQ------WIT--DVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTG 638 (837)
Q Consensus 567 g~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~------~I~--~l~fspdg~~Latgs~Dg~I~IWDl~~~~~~~~~~~~ 638 (837)
+..+++++.++.|+.+|..+++.+-.+..... .+. .+... ++..++.++.++.|+.+|.++++..-+ +..
T Consensus 61 ~g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~-~~~~V~v~~~~g~v~AlD~~TG~~~W~-~~~ 138 (488)
T cd00216 61 DGDMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYW-DPRKVFFGTFDGRLVALDAETGKQVWK-FGN 138 (488)
T ss_pred CCEEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEEc-cCCeEEEecCCCeEEEEECCCCCEeee-ecC
Confidence 34566777789999999999988866643322 010 11111 226788888999999999999875332 222
Q ss_pred ccc-----ce-EEEEEcCCCCeEEEEEe---------CCCcEEEEECCCCeeeeEEecCCC-------------------
Q 003236 639 HST-----TV-MSLDFHPSKEDLLCSCD---------NNSEIRYWSINNGSCAGVFKCQSG------------------- 684 (837)
Q Consensus 639 h~~-----~V-~sl~fspdg~~llasgs---------~Dg~I~vwDl~t~~~i~~~~~~~~------------------- 684 (837)
... .+ .+..+. +. +++.++ .++.|..+|..+|+.+..+.....
T Consensus 139 ~~~~~~~~~i~ssP~v~--~~-~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g 215 (488)
T cd00216 139 NDQVPPGYTMTGAPTIV--KK-LVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPGG 215 (488)
T ss_pred CCCcCcceEecCCCEEE--CC-EEEEeccccccccCCCCcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceecCCC
Confidence 111 01 112222 13 233332 367899999999999888765211
Q ss_pred --e-eEEEEecCCCEEEEEEcCC------------------eEEEEECCCCeEEEEEcCCCCCE------EEEEEc----
Q 003236 685 --A-TQMRFQPRLGRILAAAIEN------------------YISILDVETQVCRLKLQGHKNQV------HSVCWN---- 733 (837)
Q Consensus 685 --i-~sl~~sp~g~~llags~dg------------------~I~iwDl~s~~~~~~l~~h~~~V------~sl~~s---- 733 (837)
+ ....+.+.++.+++++.++ .|.-+|.++++.+..+..-.... ....+.
T Consensus 216 ~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~~ 295 (488)
T cd00216 216 GTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLADIKP 295 (488)
T ss_pred CCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEeccc
Confidence 0 1244555667888887664 79999999999988865311111 001111
Q ss_pred CCCC---EEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEE------------------EcCCe
Q 003236 734 TSGE---YLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVI------------------GCYET 791 (837)
Q Consensus 734 pdg~---~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fspdg~~L~sg------------------s~dg~ 791 (837)
-++. ++++++ +|.+..+|.+++ +.+...... ...++.+| ..++++ ..++.
T Consensus 296 ~~g~~~~~V~~g~~~G~l~ald~~tG---~~~W~~~~~---~~~~~~~~--~~vyv~~~~~~~~~~~~~~~~~~~~~~G~ 367 (488)
T cd00216 296 KDGKPVPAIVHAPKNGFFYVLDRTTG---KLISARPEV---EQPMAYDP--GLVYLGAFHIPLGLPPQKKKRCKKPGKGG 367 (488)
T ss_pred cCCCeeEEEEEECCCceEEEEECCCC---cEeeEeEee---ccccccCC--ceEEEccccccccCcccccCCCCCCCceE
Confidence 1333 455666 999999999998 444333211 11123333 233332 23578
Q ss_pred EEEEECCCCcEE-EeccC--C------CCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 003236 792 LELWNMTENKTL-TLSAH--D------KLVSSLAASTVNGMVASASHDKCVKIWK 837 (837)
Q Consensus 792 I~IwDl~s~~~~-~l~~h--~------~~V~sla~spdg~~LaSgs~DG~I~IWd 837 (837)
|.-+|+.+++.+ ..... . .+...-...-.+.+|+.++.||.|+.+|
T Consensus 368 l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~~~g~~v~~g~~dG~l~ald 422 (488)
T cd00216 368 LAALDPKTGKVVWEKREGTIRDSWNIGFPHWGGSLATAGNLVFAGAADGYFRAFD 422 (488)
T ss_pred EEEEeCCCCcEeeEeeCCccccccccCCcccCcceEecCCeEEEECCCCeEEEEE
Confidence 999999999877 22211 0 1111111112457788888899888764
|
The alignment model contains an 8-bladed beta-propeller. |
| >PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=98.42 E-value=0.00022 Score=77.11 Aligned_cols=256 Identities=9% Similarity=0.097 Sum_probs=159.7
Q ss_pred CcEEEEeCCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeC----------CCeEEEEEcCCCCceeEEeecc--c----
Q 003236 577 KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA----------DRTVRVWDTENPDYSLRTFTGH--S---- 640 (837)
Q Consensus 577 g~I~VWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~----------Dg~I~IWDl~~~~~~~~~~~~h--~---- 640 (837)
+.|+|+|.++++.+-.+.. +..-.+..+|+++.+++++. .-.|.+||..+-.......... .
T Consensus 17 ~rv~viD~d~~k~lGmi~~--g~~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~ 94 (342)
T PF06433_consen 17 SRVYVIDADSGKLLGMIDT--GFLGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVV 94 (342)
T ss_dssp EEEEEEETTTTEEEEEEEE--ESSEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS
T ss_pred ceEEEEECCCCcEEEEeec--ccCCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchheec
Confidence 4799999999998877753 33445678999999887543 4479999999754322211111 1
Q ss_pred cceEEEEEcCCCCeEEEEE-eCCCcEEEEECCCCeeeeEEecCCCeeEEEEecCCCEEEEEEcCCeEEEEECC-CCeEEE
Q 003236 641 TTVMSLDFHPSKEDLLCSC-DNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVE-TQVCRL 718 (837)
Q Consensus 641 ~~V~sl~fspdg~~llasg-s~Dg~I~vwDl~t~~~i~~~~~~~~i~sl~~sp~g~~llags~dg~I~iwDl~-s~~~~~ 718 (837)
.....+.++.+++++++.- +---.|.|.|+..++.+..+..++...-.-+- ...+.+.|.||.+..+.+. .|+...
T Consensus 95 ~~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~PGC~~iyP~~--~~~F~~lC~DGsl~~v~Ld~~Gk~~~ 172 (342)
T PF06433_consen 95 PYKNMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTPGCWLIYPSG--NRGFSMLCGDGSLLTVTLDADGKEAQ 172 (342)
T ss_dssp --GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGTSEEEEEEEE--TTEEEEEETTSCEEEEEETSTSSEEE
T ss_pred ccccceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecCCCEEEEEecC--CCceEEEecCCceEEEEECCCCCEeE
Confidence 2234467788877666432 23457899999999999888875543333222 2568899999999998887 444432
Q ss_pred E----EcCCCCCE-EEEEEcCCCC-EEEEEeCCeEEEEEcCCCCCceeEEEeecC----------CCceEEEEEeCCCCE
Q 003236 719 K----LQGHKNQV-HSVCWNTSGE-YLASVSDELVRVWSIGSGSKGECIHELSCT----------GNKFHSCVFHPTFPS 782 (837)
Q Consensus 719 ~----l~~h~~~V-~sl~~spdg~-~LasgsDg~I~IwDl~s~~~~~~i~~~~~~----------~~~I~sv~fspdg~~ 782 (837)
+ |.....++ ..-++...+. +++..-+|.|+-.|+..... ......... .+...-+++++....
T Consensus 173 ~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~-~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~r 251 (342)
T PF06433_consen 173 KSTKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSA-KFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGR 251 (342)
T ss_dssp EEEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSE-EEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTE
T ss_pred eeccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcc-cccCcccccCccccccCcCCcceeeeeeccccCe
Confidence 2 11122222 2334554444 44444499999999876532 222222211 122344788887766
Q ss_pred EEEEEcC--------C--eEEEEECCCCcEEEeccCCCCeeEEEEeCCCC-EEEEEE-CCCcEEEeC
Q 003236 783 LLVIGCY--------E--TLELWNMTENKTLTLSAHDKLVSSLAASTVNG-MVASAS-HDKCVKIWK 837 (837)
Q Consensus 783 L~sgs~d--------g--~I~IwDl~s~~~~~l~~h~~~V~sla~spdg~-~LaSgs-~DG~I~IWd 837 (837)
|++.-.. + .|.+||+.+++.+....-..++.+|.++.+.+ +|++.+ .++.|.|||
T Consensus 252 lyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D 318 (342)
T PF06433_consen 252 LYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPLEHPIDSIAVSQDDKPLLYALSAGDGTLDVYD 318 (342)
T ss_dssp EEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEEEEEESEEEEESSSS-EEEEEETTTTEEEEEE
T ss_pred EEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeCCCccceEEEccCCCcEEEEEcCCCCeEEEEe
Confidence 7664321 1 68899999999985555456788999999876 665554 578999986
|
4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). |
| >KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=98.40 E-value=5e-06 Score=96.93 Aligned_cols=181 Identities=17% Similarity=0.271 Sum_probs=142.3
Q ss_pred CCCEEEEEECCCcEEEEeCCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeEEeeccccceEE
Q 003236 566 DGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMS 645 (837)
Q Consensus 566 dg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~s 645 (837)
++..++.|+.-..+..+|+.+.+..+........|+-++. +++++++|...|+|.+-|..+.+ .++++..|.+.|.+
T Consensus 146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR~--Nnr~lf~G~t~G~V~LrD~~s~~-~iht~~aHs~siSD 222 (1118)
T KOG1275|consen 146 GPSTLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMRY--NNRNLFCGDTRGTVFLRDPNSFE-TIHTFDAHSGSISD 222 (1118)
T ss_pred CCcceeecchhhheeeeecccceeeeeeeccCCceEEEEe--cCcEEEeecccceEEeecCCcCc-eeeeeeccccceee
Confidence 3456778888888999999998888777655555666554 67899999999999999999865 58999999999999
Q ss_pred EEEcCCCCeEEEEEeC---------CCcEEEEECCCCeeeeEEecCCCeeEEEEecCC-CEEEEEEcCCeEEEEEC---C
Q 003236 646 LDFHPSKEDLLCSCDN---------NSEIRYWSINNGSCAGVFKCQSGATQMRFQPRL-GRILAAAIENYISILDV---E 712 (837)
Q Consensus 646 l~fspdg~~llasgs~---------Dg~I~vwDl~t~~~i~~~~~~~~i~sl~~sp~g-~~llags~dg~I~iwDl---~ 712 (837)
++.. ++++++|+. |..|+|||++..+.+..+..+....-+.|+|.- ..+++++..|.+.+.|. .
T Consensus 223 fDv~---GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P~flrf~Psl~t~~~V~S~sGq~q~vd~~~ls 299 (1118)
T KOG1275|consen 223 FDVQ---GNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGPQFLRFHPSLTTRLAVTSQSGQFQFVDTATLS 299 (1118)
T ss_pred eecc---CCeEEEeecccccccccccchhhhhhhhhhhccCCcccccCchhhhhcccccceEEEEecccceeeccccccC
Confidence 8887 336667764 557899999998888777776677778888853 45778888899999993 3
Q ss_pred CC-eEEEEEcCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEc
Q 003236 713 TQ-VCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSI 752 (837)
Q Consensus 713 s~-~~~~~l~~h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl 752 (837)
+. ..+..+......+..+++++++..++.+. +|.|.+|.-
T Consensus 300 NP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa~ 341 (1118)
T KOG1275|consen 300 NPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWAD 341 (1118)
T ss_pred CCccceeEEccCCCcceeEEecCCCceEEEecccCcEeeecC
Confidence 33 22333444455699999999999999999 999999973
|
|
| >KOG2695 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.40 E-value=6.9e-07 Score=93.93 Aligned_cols=160 Identities=13% Similarity=0.187 Sum_probs=120.8
Q ss_pred EEEeCCCcEEEEECCCCeeeeEEecCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCC-----eEEEEEcCCCCCEEEEE
Q 003236 657 CSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQ-----VCRLKLQGHKNQVHSVC 731 (837)
Q Consensus 657 asgs~Dg~I~vwDl~t~~~i~~~~~~~~i~sl~~sp~g~~llags~dg~I~iwDl~s~-----~~~~~l~~h~~~V~sl~ 731 (837)
++.+.+-.|.+-|++++..-. |...+.|.++.|...++.++.|+..|.|..+|++.+ .+...+. |.+.|+++.
T Consensus 228 fs~G~sqqv~L~nvetg~~qs-f~sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rly-h~Ssvtslq 305 (425)
T KOG2695|consen 228 FSVGLSQQVLLTNVETGHQQS-FQSKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLY-HDSSVTSLQ 305 (425)
T ss_pred ecccccceeEEEEeecccccc-cccchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEEE-cCcchhhhh
Confidence 455567788899998775433 335678889999998899999999999999999864 4444554 899999998
Q ss_pred EcC-CCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEE--EEEeCCCCEEEEEEcCCeEEEEECCCCcEEEecc
Q 003236 732 WNT-SGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHS--CVFHPTFPSLLVIGCYETLELWNMTENKTLTLSA 807 (837)
Q Consensus 732 ~sp-dg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~s--v~fspdg~~L~sgs~dg~I~IwDl~s~~~~~l~~ 807 (837)
.-. ++.+|.+.+ +|+|++||++.-+..+.+..+++|.+.-.- +.+.+....|++++.|-..+||.++++.++....
T Consensus 306 ~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl~tip 385 (425)
T KOG2695|consen 306 ILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHLLCTIP 385 (425)
T ss_pred hhccccceEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccccceEEEccCeeEEEEEecccCceeeccC
Confidence 766 667777666 999999999977444458888888665433 3456777889999999999999999999884332
Q ss_pred -----CCCCeeEEEEe
Q 003236 808 -----HDKLVSSLAAS 818 (837)
Q Consensus 808 -----h~~~V~sla~s 818 (837)
.+..+.+++|.
T Consensus 386 f~~s~~e~d~~sv~~~ 401 (425)
T KOG2695|consen 386 FPYSASEVDIPSVAFD 401 (425)
T ss_pred CCCccccccccceehh
Confidence 23345566654
|
|
| >KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.40 E-value=1.4e-06 Score=94.30 Aligned_cols=207 Identities=15% Similarity=0.153 Sum_probs=148.9
Q ss_pred cCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCC--CCceeEEeeccccceEEEEEcCCCCeEEEEEeC-CCcEEEEECC
Q 003236 595 EHTQWITDVRFSPSLSRLATSSADRTVRVWDTEN--PDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDN-NSEIRYWSIN 671 (837)
Q Consensus 595 ~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~--~~~~~~~~~~h~~~V~sl~fspdg~~llasgs~-Dg~I~vwDl~ 671 (837)
-|.+.|+.+.-. ..+++++++.||.++.|.-.. +...+..+..|...|.+++.+-++ .++++.+. |..++++|+.
T Consensus 7 mhrd~i~hv~~t-ka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg-~L~~Sv~d~Dhs~KvfDvE 84 (558)
T KOG0882|consen 7 MHRDVITHVFPT-KAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDG-WLFRSVEDPDHSVKVFDVE 84 (558)
T ss_pred cccceeeeEeee-hhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccc-eeEeeccCcccceeEEEee
Confidence 377777776554 457999999999999997654 223345667788999999999885 47778666 9999999999
Q ss_pred CCeeeeEEecCCCeeEEEEecCCC----EEEEEE-cCCeEEEEECCCCe--EEEEEcCCCCCEEEEEEcCCCCEEEEEe-
Q 003236 672 NGSCAGVFKCQSGATQMRFQPRLG----RILAAA-IENYISILDVETQV--CRLKLQGHKNQVHSVCWNTSGEYLASVS- 743 (837)
Q Consensus 672 t~~~i~~~~~~~~i~sl~~sp~g~----~llags-~dg~I~iwDl~s~~--~~~~l~~h~~~V~sl~~spdg~~Lasgs- 743 (837)
+-..+..++...-...++|....+ .+++.. .++.|.++|-.... ....-.-|..+|.++.+++.+..+++..
T Consensus 85 n~DminmiKL~~lPg~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~ 164 (558)
T KOG0882|consen 85 NFDMINMIKLVDLPGFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSIDI 164 (558)
T ss_pred ccchhhhcccccCCCceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccccceeeccc
Confidence 877665555433222333322212 233333 46899999987653 2333344999999999999999998888
Q ss_pred CCeEEEEEcCC-CCC-----------ceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE
Q 003236 744 DELVRVWSIGS-GSK-----------GECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL 803 (837)
Q Consensus 744 Dg~I~IwDl~s-~~~-----------~~~i~~~~~~~~~I~sv~fspdg~~L~sgs~dg~I~IwDl~s~~~~ 803 (837)
.|.|..|.... -.. ...+..+........++.|+|++..+.+.+.|..|++++.++++++
T Consensus 165 ~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklv 236 (558)
T KOG0882|consen 165 SGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLV 236 (558)
T ss_pred cceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEeccchhh
Confidence 89999998873 100 0112233344567789999999999999999999999999998754
|
|
| >cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases | Back alignment and domain information |
|---|
Probab=98.35 E-value=0.00037 Score=81.42 Aligned_cols=228 Identities=14% Similarity=0.102 Sum_probs=133.5
Q ss_pred CEEEEEECCCcEEEEeCCCCeEEEEeccCCCC--eEEEEEcC--CCCEEEEEe---------CCCeEEEEEcCCCCceeE
Q 003236 568 KLLATGGHDKKAVLWCTESFTVKSTLEEHTQW--ITDVRFSP--SLSRLATSS---------ADRTVRVWDTENPDYSLR 634 (837)
Q Consensus 568 ~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~--I~~l~fsp--dg~~Latgs---------~Dg~I~IWDl~~~~~~~~ 634 (837)
..++.++.++.|+.+|.++++.+..+...... -..+.-+| .+..++.++ .++.|..+|..+++..-+
T Consensus 111 ~~V~v~~~~g~v~AlD~~TG~~~W~~~~~~~~~~~~~i~ssP~v~~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~ 190 (488)
T cd00216 111 RKVFFGTFDGRLVALDAETGKQVWKFGNNDQVPPGYTMTGAPTIVKKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWR 190 (488)
T ss_pred CeEEEecCCCeEEEEECCCCCEeeeecCCCCcCcceEecCCCEEECCEEEEeccccccccCCCCcEEEEEECCCCceeeE
Confidence 57778888999999999999999776543221 00111111 124455554 368899999998875333
Q ss_pred Eeecccc-------------------ce-EEEEEcCCCCeEEEEEeCCC------------------cEEEEECCCCeee
Q 003236 635 TFTGHST-------------------TV-MSLDFHPSKEDLLCSCDNNS------------------EIRYWSINNGSCA 676 (837)
Q Consensus 635 ~~~~h~~-------------------~V-~sl~fspdg~~llasgs~Dg------------------~I~vwDl~t~~~i 676 (837)
....... .| ...++.+.+. +++.++.++ .|..+|+++|+.+
T Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g-~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~ 269 (488)
T cd00216 191 FYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTN-LVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVK 269 (488)
T ss_pred eeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCC-EEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEE
Confidence 2221110 11 1233444444 344454443 7999999999999
Q ss_pred eEEecCCC-e------eEEEEe----cCCC---EEEEEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEE
Q 003236 677 GVFKCQSG-A------TQMRFQ----PRLG---RILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASV 742 (837)
Q Consensus 677 ~~~~~~~~-i------~sl~~s----p~g~---~llags~dg~I~iwDl~s~~~~~~l~~h~~~V~sl~~spdg~~Lasg 742 (837)
..+..... . ....+. -++. .+++++.+|.+..+|.++++.+...... ...++.+| +..++..
T Consensus 270 W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~---~~~~~~~~-~~vyv~~ 345 (488)
T cd00216 270 WFYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTTGKLISARPEV---EQPMAYDP-GLVYLGA 345 (488)
T ss_pred EEeeCCCCCCcccccCCCCeEEeccccCCCeeEEEEEECCCceEEEEECCCCcEeeEeEee---ccccccCC-ceEEEcc
Confidence 88764211 1 111111 1232 5777888999999999999988765421 11123333 2222211
Q ss_pred ------------------eCCeEEEEEcCCCCCceeEEEeecCC--------CceEEEEEeCCCCEEEEEEcCCeEEEEE
Q 003236 743 ------------------SDELVRVWSIGSGSKGECIHELSCTG--------NKFHSCVFHPTFPSLLVIGCYETLELWN 796 (837)
Q Consensus 743 ------------------sDg~I~IwDl~s~~~~~~i~~~~~~~--------~~I~sv~fspdg~~L~sgs~dg~I~IwD 796 (837)
.+|.|..+|+.++ +.+-...... .........-.+..|++++.|+.|+.+|
T Consensus 346 ~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG---~~~W~~~~~~~~~~~~~g~~~~~~~~~~~g~~v~~g~~dG~l~ald 422 (488)
T cd00216 346 FHIPLGLPPQKKKRCKKPGKGGLAALDPKTG---KVVWEKREGTIRDSWNIGFPHWGGSLATAGNLVFAGAADGYFRAFD 422 (488)
T ss_pred ccccccCcccccCCCCCCCceEEEEEeCCCC---cEeeEeeCCccccccccCCcccCcceEecCCeEEEECCCCeEEEEE
Confidence 1567888888877 3343333220 1111111122456789999999999999
Q ss_pred CCCCcEE
Q 003236 797 MTENKTL 803 (837)
Q Consensus 797 l~s~~~~ 803 (837)
.++|+.+
T Consensus 423 ~~tG~~l 429 (488)
T cd00216 423 ATTGKEL 429 (488)
T ss_pred CCCCcee
Confidence 9999988
|
The alignment model contains an 8-bladed beta-propeller. |
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.33 E-value=7.8e-05 Score=87.07 Aligned_cols=205 Identities=15% Similarity=0.252 Sum_probs=139.1
Q ss_pred EEcCCCCEEEEEeCCCeEEEEEcCCCCceeEEeeccccceEEEEEcCCCCeEEEEEeCCC-----cEEEEECCCC-----
Q 003236 604 RFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNS-----EIRYWSINNG----- 673 (837)
Q Consensus 604 ~fspdg~~Latgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg-----~I~vwDl~t~----- 673 (837)
+|++.+..++.|+.+|.|.+++-. -..+..+..+...|...-|.-++..++++.+.|+ .|+|||++.-
T Consensus 30 c~~s~~~~vvigt~~G~V~~Ln~s--~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~s 107 (933)
T KOG2114|consen 30 CCSSSTGSVVIGTADGRVVILNSS--FQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNS 107 (933)
T ss_pred EEcCCCceEEEeeccccEEEeccc--ceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCC
Confidence 366788899999999988877644 2334666666666444444555555666666554 5899998642
Q ss_pred -eee---eEEec-----CCCeeEEEEecCCCEEEEEEcCCeEEEEECC---C-CeEEEEEcCCCCCEEEEEEcCCCCE-E
Q 003236 674 -SCA---GVFKC-----QSGATQMRFQPRLGRILAAAIENYISILDVE---T-QVCRLKLQGHKNQVHSVCWNTSGEY-L 739 (837)
Q Consensus 674 -~~i---~~~~~-----~~~i~sl~~sp~g~~llags~dg~I~iwDl~---s-~~~~~~l~~h~~~V~sl~~spdg~~-L 739 (837)
.++ +.+.. ..++.+++++.+-..+++|-.+|.|..+.-+ . +...........+|+.+++..++.. +
T Consensus 108 P~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~~s~l 187 (933)
T KOG2114|consen 108 PQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDGKSVL 187 (933)
T ss_pred cceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecCCceeE
Confidence 233 22221 3467889999998999999999999998532 1 2222222235679999999988887 5
Q ss_pred EEEeCCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcE-EEec-cCCCCee
Q 003236 740 ASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKT-LTLS-AHDKLVS 813 (837)
Q Consensus 740 asgsDg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fspdg~~L~sgs~dg~I~IwDl~s~~~-~~l~-~h~~~V~ 813 (837)
+++....|.+|.+.... .....+..++..+.|..+++....+++++. ..|++||...... ..+. +|.....
T Consensus 188 Fv~Tt~~V~~y~l~gr~--p~~~~ld~~G~~lnCss~~~~t~qfIca~~-e~l~fY~sd~~~~cfaf~~g~kk~~~ 260 (933)
T KOG2114|consen 188 FVATTEQVMLYSLSGRT--PSLKVLDNNGISLNCSSFSDGTYQFICAGS-EFLYFYDSDGRGPCFAFEVGEKKEML 260 (933)
T ss_pred EEEecceeEEEEecCCC--cceeeeccCCccceeeecCCCCccEEEecC-ceEEEEcCCCcceeeeecCCCeEEEE
Confidence 55557789999998432 345557788899999999887764555544 4699999876543 3555 5555443
|
|
| >PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats | Back alignment and domain information |
|---|
Probab=98.32 E-value=0.00061 Score=77.46 Aligned_cols=90 Identities=11% Similarity=0.100 Sum_probs=70.8
Q ss_pred eEEEEEcCCCCCceeEEE-eecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEEEeccCCCCeeEEEEeCCCCEE
Q 003236 746 LVRVWSIGSGSKGECIHE-LSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMV 824 (837)
Q Consensus 746 ~I~IwDl~s~~~~~~i~~-~~~~~~~I~sv~fspdg~~L~sgs~dg~I~IwDl~s~~~~~l~~h~~~V~sla~spdg~~L 824 (837)
...+|++...+. .++.. .-.....+.+++++|+...++.|+.||.|.+||...+... ...+.-.++.++|+|+|.++
T Consensus 237 d~ciYE~~r~kl-qrvsvtsipL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~-~~ka~~~P~~iaWHp~gai~ 314 (545)
T PF11768_consen 237 DSCIYECSRNKL-QRVSVTSIPLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTL-LAKAEFIPTLIAWHPDGAIF 314 (545)
T ss_pred EEEEEEeecCce-eEEEEEEEecCCcceEEecCcccceEEEEecCCeEEEEEcCCCeee-eeeecccceEEEEcCCCcEE
Confidence 356677764432 33322 2345778999999999999999999999999998777444 33455678999999999999
Q ss_pred EEEECCCcEEEeC
Q 003236 825 ASASHDKCVKIWK 837 (837)
Q Consensus 825 aSgs~DG~I~IWd 837 (837)
++|+.-|.|.+||
T Consensus 315 ~V~s~qGelQ~FD 327 (545)
T PF11768_consen 315 VVGSEQGELQCFD 327 (545)
T ss_pred EEEcCCceEEEEE
Confidence 9999999999998
|
|
| >KOG3621 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.32 E-value=7.5e-05 Score=85.67 Aligned_cols=271 Identities=12% Similarity=0.130 Sum_probs=151.7
Q ss_pred CCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEE-EeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCcee
Q 003236 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKS-TLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSL 633 (837)
Q Consensus 555 ~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~~~-~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~~~~~~ 633 (837)
...|.--+++..+++++.|+.-|.|++|+-..+.... ...+..+.+..+..+++..++|.|+..|.|.|+-+......-
T Consensus 33 ~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~ 112 (726)
T KOG3621|consen 33 PARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRD 112 (726)
T ss_pred cceEEEEEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCCc
Confidence 3345445566678899999999999999966544332 222345566677788888889999999999999887633211
Q ss_pred E-----EeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCC-----eeeeEEecCCCeeEEEEecCCCEEEEEEcC
Q 003236 634 R-----TFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNG-----SCAGVFKCQSGATQMRFQPRLGRILAAAIE 703 (837)
Q Consensus 634 ~-----~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~-----~~i~~~~~~~~i~sl~~sp~g~~llags~d 703 (837)
. .-..|...|++++|++++..++ +|+..|.|.+-.+... .....+...+.|..+.+.. .++++++.-
T Consensus 113 ~~~~t~~d~~~~~rVTal~Ws~~~~k~y-sGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds~IVQlD~~q--~~LLVStl~ 189 (726)
T KOG3621|consen 113 LDYVTPCDKSHKCRVTALEWSKNGMKLY-SGDSQGKVVLTELDSRQAFLSKSQEILSEDSEIVQLDYLQ--SYLLVSTLT 189 (726)
T ss_pred ceeeccccccCCceEEEEEecccccEEe-ecCCCceEEEEEechhhhhccccceeeccCcceEEeeccc--ceehHhhhh
Confidence 1 1223778999999999987554 9999999998888762 1222333456666666543 344444433
Q ss_pred CeEEEEECCCCeEEEEEcC-CCC-CEEEEEEcCC----CCEEEEEeCCeEEEEEcCCCCCceeEEE--ee----------
Q 003236 704 NYISILDVETQVCRLKLQG-HKN-QVHSVCWNTS----GEYLASVSDELVRVWSIGSGSKGECIHE--LS---------- 765 (837)
Q Consensus 704 g~I~iwDl~s~~~~~~l~~-h~~-~V~sl~~spd----g~~LasgsDg~I~IwDl~s~~~~~~i~~--~~---------- 765 (837)
.. .+++++..+....-+. .++ .-...||-|. ..-.+.|.--..|+|..+-.. ..+.+ ++
T Consensus 190 r~-~Lc~tE~eti~QIG~k~R~~~~~~GACF~~g~~~~q~~~IycaRPG~RlWead~~G--~V~~Thqfk~ala~~p~p~ 266 (726)
T KOG3621|consen 190 RC-ILCQTEAETITQIGKKPRKSLIDFGACFFPGQCKAQKPQIYCARPGLRLWEADFAG--EVIKTHQFKDALARPPAPE 266 (726)
T ss_pred hh-heeecchhHHHHhcCCCcCCccccceEEeeccccCCCceEEEecCCCceEEeecce--eEEEeeehhhhhccCCCCc
Confidence 32 2344443221111111 111 1234455443 233333442236777654321 11111 11
Q ss_pred ----c-------------CCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEEEeccCCCCeeEEEEeCCCCEEEEEE
Q 003236 766 ----C-------------TGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASAS 828 (837)
Q Consensus 766 ----~-------------~~~~I~sv~fspdg~~L~sgs~dg~I~IwDl~s~~~~~l~~h~~~V~sla~spdg~~LaSgs 828 (837)
. +.-....+.+-.+ ..+++-+.-| |+|+|..+...+........|..++.+ ++-|+.-.
T Consensus 267 i~~~s~esp~~~~~~~~~q~ls~~k~~~l~~-~~vLa~te~G-iyv~d~~~~~v~l~se~~~DI~dVs~~--~neiFvL~ 342 (726)
T KOG3621|consen 267 IPIRSLESPNQRSLPSGTQHLSLSKSSTLHS-DRVLAWTEVG-IYVFDSNNSQVYLWSEGGHDILDVSHC--GNEIFVLN 342 (726)
T ss_pred ccCCCcCCccccCCCCCccccccceeEEeec-ceEEEeecce-EEEEEeccceEEEeecCCCceeEEeec--CceEEEEe
Confidence 0 0001111112122 2344444444 889998888777666555566666544 44455555
Q ss_pred CCCcEEE
Q 003236 829 HDKCVKI 835 (837)
Q Consensus 829 ~DG~I~I 835 (837)
.||.+++
T Consensus 343 ~d~~l~~ 349 (726)
T KOG3621|consen 343 LDRGLKV 349 (726)
T ss_pred cCCceeE
Confidence 5665543
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.30 E-value=0.00017 Score=84.42 Aligned_cols=195 Identities=13% Similarity=0.166 Sum_probs=137.0
Q ss_pred CeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEeccCCCC-eEEEEEcCCCCEEEEEeCCC-----eEEEEEcCCCC
Q 003236 557 KVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQW-ITDVRFSPSLSRLATSSADR-----TVRVWDTENPD 630 (837)
Q Consensus 557 ~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~-I~~l~fspdg~~Latgs~Dg-----~I~IWDl~~~~ 630 (837)
.|+| |++.+..+|.|+.+|.|.+.+ ...+.+..+..+... |..+....+..+|++.+.|+ .|+|||++..+
T Consensus 27 ~isc--~~s~~~~vvigt~~G~V~~Ln-~s~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~ 103 (933)
T KOG2114|consen 27 AISC--CSSSTGSVVIGTADGRVVILN-SSFQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVD 103 (933)
T ss_pred ceeE--EcCCCceEEEeeccccEEEec-ccceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccC
Confidence 4554 577788999999999999987 445666777777777 55554444447888877765 58999987431
Q ss_pred -----cee---EEee----ccccceEEEEEcCCCCeEEEEEeCCCcEEEEECC--C--C-eeeeEEecCCCeeEEEEecC
Q 003236 631 -----YSL---RTFT----GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSIN--N--G-SCAGVFKCQSGATQMRFQPR 693 (837)
Q Consensus 631 -----~~~---~~~~----~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~--t--~-~~i~~~~~~~~i~sl~~sp~ 693 (837)
.++ +.+. ....++.+++.+.+ -..+|.|-.+|.|.++.-. . + +.........+|+.+.+..+
T Consensus 104 ~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~-l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d 182 (933)
T KOG2114|consen 104 KNNSPQCLYEHRIFTIKNPTNPSPASSLAVSED-LKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSD 182 (933)
T ss_pred CCCCcceeeeeeeeccCCCCCCCcceEEEEEcc-ccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecC
Confidence 122 2221 13467888999887 4467788889999888421 1 1 22223334678999999999
Q ss_pred CCEEEEEEcCCeEEEEECCCCeE-EEEEcCCCCCEEEEEEcCCCCEEEEEeCCeEEEEEcCCC
Q 003236 694 LGRILAAAIENYISILDVETQVC-RLKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSG 755 (837)
Q Consensus 694 g~~llags~dg~I~iwDl~s~~~-~~~l~~h~~~V~sl~~spdg~~LasgsDg~I~IwDl~s~ 755 (837)
+..++.+.....|.+|.+....+ ...+..|...+.|..+++...-++++.+..|.+||....
T Consensus 183 ~~s~lFv~Tt~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIca~~e~l~fY~sd~~ 245 (933)
T KOG2114|consen 183 GKSVLFVATTEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFICAGSEFLYFYDSDGR 245 (933)
T ss_pred CceeEEEEecceeEEEEecCCCcceeeeccCCccceeeecCCCCccEEEecCceEEEEcCCCc
Confidence 88866666678899999885443 444677888999999987666577777888999998744
|
|
| >KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=98.30 E-value=0.00051 Score=70.38 Aligned_cols=143 Identities=12% Similarity=0.035 Sum_probs=100.6
Q ss_pred CCEEEEEECCCcEEEEeCCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeEEeeccccceEE-
Q 003236 567 GKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMS- 645 (837)
Q Consensus 567 g~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~s- 645 (837)
..+++.|++.+.+...|..+++.+..-. -...|.+-+.- -|.+++.|+..|.+++.++.++.. ...+... +.|.+
T Consensus 23 kT~v~igSHs~~~~avd~~sG~~~We~i-lg~RiE~sa~v-vgdfVV~GCy~g~lYfl~~~tGs~-~w~f~~~-~~vk~~ 98 (354)
T KOG4649|consen 23 KTLVVIGSHSGIVIAVDPQSGNLIWEAI-LGVRIECSAIV-VGDFVVLGCYSGGLYFLCVKTGSQ-IWNFVIL-ETVKVR 98 (354)
T ss_pred ceEEEEecCCceEEEecCCCCcEEeehh-hCceeeeeeEE-ECCEEEEEEccCcEEEEEecchhh-eeeeeeh-hhhccc
Confidence 4578889999999999999988875432 22344443332 467899999999999999999865 3333222 22222
Q ss_pred EEEcCCCCeEEEEEeCCCcEEEEECCCCeeeeEEecCCCee-EEEEecCCCEEEEEEcCCeEEEEECCCC
Q 003236 646 LDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGAT-QMRFQPRLGRILAAAIENYISILDVETQ 714 (837)
Q Consensus 646 l~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~~~~i~-sl~~sp~g~~llags~dg~I~iwDl~s~ 714 (837)
....+++ .+++.++.|+..+..|.++..++...+..+.+. +-++.+-...|+++...|.|.-...+..
T Consensus 99 a~~d~~~-glIycgshd~~~yalD~~~~~cVykskcgG~~f~sP~i~~g~~sly~a~t~G~vlavt~~~~ 167 (354)
T KOG4649|consen 99 AQCDFDG-GLIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFVSPVIAPGDGSLYAAITAGAVLAVTKNPY 167 (354)
T ss_pred eEEcCCC-ceEEEecCCCcEEEecccccceEEecccCCceeccceecCCCceEEEEeccceEEEEccCCC
Confidence 2334454 478899999999999999999999988766643 4556665567777777777766665544
|
|
| >COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.28 E-value=7.4e-05 Score=84.99 Aligned_cols=204 Identities=15% Similarity=0.117 Sum_probs=131.3
Q ss_pred EEEEeCCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeC---C-CeEEEEEcCCCCceeEEeeccccceEEEEEcCCCCe
Q 003236 579 AVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA---D-RTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKED 654 (837)
Q Consensus 579 I~VWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~---D-g~I~IWDl~~~~~~~~~~~~h~~~V~sl~fspdg~~ 654 (837)
+.+-|.+ +.....+..-...+..-+|+|++..++..+. . ..++++|+.++..... ....+.-....|+|||..
T Consensus 175 l~~~D~d-g~~~~~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i--~~~~g~~~~P~fspDG~~ 251 (425)
T COG0823 175 LALGDYD-GYNQQKLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVI--LNFNGNNGAPAFSPDGSK 251 (425)
T ss_pred EEEEccC-CcceeEecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCcccee--eccCCccCCccCCCCCCE
Confidence 3444443 4555555555667888899999887665532 2 4699999998764222 113344456789999999
Q ss_pred EEEEEeCCCc--EEEEECCCCeeeeEEecCCCeeEEEEecCCCEEEEEEcC-C--eEEEEECCCCeEEEEEcCCCCCEEE
Q 003236 655 LLCSCDNNSE--IRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIE-N--YISILDVETQVCRLKLQGHKNQVHS 729 (837)
Q Consensus 655 llasgs~Dg~--I~vwDl~t~~~i~~~~~~~~i~sl~~sp~g~~llags~d-g--~I~iwDl~s~~~~~~l~~h~~~V~s 729 (837)
++++...||. |+++|+..+...+.....+.-..-.|+|+|++|+..+.. | .|.++|++...... +......-.+
T Consensus 252 l~f~~~rdg~~~iy~~dl~~~~~~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~r-iT~~~~~~~~ 330 (425)
T COG0823 252 LAFSSSRDGSPDIYLMDLDGKNLPRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVTR-LTFSGGGNSN 330 (425)
T ss_pred EEEEECCCCCccEEEEcCCCCcceecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCceeE-eeccCCCCcC
Confidence 9999888875 666688776644422223334467899999999888764 3 57888888765432 2222222237
Q ss_pred EEEcCCCCEEEEEe--CCe--EEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCC
Q 003236 730 VCWNTSGEYLASVS--DEL--VRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYE 790 (837)
Q Consensus 730 l~~spdg~~Lasgs--Dg~--I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fspdg~~L~sgs~dg 790 (837)
-.|+|||++|+..+ +|. |.+.|+.++.. +..+ ........-.|.+++..|+..+..+
T Consensus 331 p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~~---~~~l-t~~~~~e~ps~~~ng~~i~~~s~~~ 391 (425)
T COG0823 331 PVWSPDGDKIVFESSSGGQWDIDKNDLASGGK---IRIL-TSTYLNESPSWAPNGRMIMFSSGQG 391 (425)
T ss_pred ccCCCCCCEEEEEeccCCceeeEEeccCCCCc---EEEc-cccccCCCCCcCCCCceEEEeccCC
Confidence 78999999999888 564 77777766632 2222 2233344557888888777665544
|
|
| >PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals | Back alignment and domain information |
|---|
Probab=98.25 E-value=0.00011 Score=82.78 Aligned_cols=260 Identities=13% Similarity=0.080 Sum_probs=139.4
Q ss_pred CeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCC--------
Q 003236 557 KVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTEN-------- 628 (837)
Q Consensus 557 ~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~-------- 628 (837)
.|+++.|+++..-|++|...|.|.||.....+... ......-....|.+- - ..++.-.|-|+..
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~--~~~~~~~~~~~~~~~----~--~~~~~~~l~di~~r~~~~~~~ 74 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYG--NREQPPDLDYNFRRF----S--LNNSPGKLTDISDRAPPSLKE 74 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE--------------------S--------GGGSS-SEEE-GGG--TT-SE
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCC--ccCCCcccCcccccc----c--ccCCCcceEEehhhCCccccc
Confidence 48999999998899999999999999765432221 000011111111110 0 0011112223221
Q ss_pred CCceeEEeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeeEEecC---------CCeeEEEEec-----CC
Q 003236 629 PDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ---------SGATQMRFQP-----RL 694 (837)
Q Consensus 629 ~~~~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~~---------~~i~sl~~sp-----~g 694 (837)
+-.+...+....++|++++.+.-| +++.|..+|.+.|.|++....+..-... ..++++.|.. |+
T Consensus 75 gf~P~~l~~~~~g~vtal~~S~iG--Fvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ 152 (395)
T PF08596_consen 75 GFLPLTLLDAKQGPVTALKNSDIG--FVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDG 152 (395)
T ss_dssp EEEEEEEE---S-SEEEEEE-BTS--EEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSS
T ss_pred ccCchhheeccCCcEeEEecCCCc--EEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCc
Confidence 112334445557899999998554 8889999999999999988877764432 2467777763 22
Q ss_pred ---CEEEEEEcCCeEEEEECC--C-Ce----EEEEEcCCCCCEEEEE-EcCC---------------------CCEEEEE
Q 003236 695 ---GRILAAAIENYISILDVE--T-QV----CRLKLQGHKNQVHSVC-WNTS---------------------GEYLASV 742 (837)
Q Consensus 695 ---~~llags~dg~I~iwDl~--s-~~----~~~~l~~h~~~V~sl~-~spd---------------------g~~Lasg 742 (837)
-.+++|+..|.+.+|.+. . +. .......+.++|..|. |+.+ .-+++++
T Consensus 153 ySSi~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvv 232 (395)
T PF08596_consen 153 YSSICLLVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVV 232 (395)
T ss_dssp SEEEEEEEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE
T ss_pred ccceEEEEEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEE
Confidence 357888999999999764 1 21 1122224667776665 3221 1267777
Q ss_pred eCCeEEEEEcCCCCCceeEEEeecCCCceEEEEE-----eCCCCEEEEEEcCCeEEEEECCCCcEE-Eecc----CCCCe
Q 003236 743 SDELVRVWSIGSGSKGECIHELSCTGNKFHSCVF-----HPTFPSLLVIGCYETLELWNMTENKTL-TLSA----HDKLV 812 (837)
Q Consensus 743 sDg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~f-----spdg~~L~sgs~dg~I~IwDl~s~~~~-~l~~----h~~~V 812 (837)
++..++|+...+. +..+...........+++ ...+..|++...+|.|++|.+..-+.+ .... ....+
T Consensus 233 Se~~irv~~~~~~---k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~l~~~~d~~~~ 309 (395)
T PF08596_consen 233 SESDIRVFKPPKS---KGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVSLPPPLDSRRL 309 (395)
T ss_dssp -SSEEEEE-TT------EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEEE-SS---HHHH
T ss_pred cccceEEEeCCCC---cccceeeccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhcccCCCccccccc
Confidence 8999999998876 444443322223334445 235677888899999999999998877 2222 12345
Q ss_pred eEEEEeCCCCEEEEEEC
Q 003236 813 SSLAASTVNGMVASASH 829 (837)
Q Consensus 813 ~sla~spdg~~LaSgs~ 829 (837)
...+++++|..++-.+.
T Consensus 310 ~~ssis~~Gdi~~~~gp 326 (395)
T PF08596_consen 310 SSSSISRNGDIFYWTGP 326 (395)
T ss_dssp TT-EE-TTS-EEEE-SS
T ss_pred cccEECCCCCEEEEeCc
Confidence 56777888887766654
|
The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A. |
| >PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide | Back alignment and domain information |
|---|
Probab=98.24 E-value=3.8e-06 Score=61.63 Aligned_cols=38 Identities=29% Similarity=0.543 Sum_probs=36.0
Q ss_pred eEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEe
Q 003236 546 TEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWC 583 (837)
Q Consensus 546 ~~~~~l~~H~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd 583 (837)
+.+.++.+|.+.|++|+|+|++.+|++|+.|++|+|||
T Consensus 2 ~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 2 KCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred eEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 46788999999999999999999999999999999997
|
WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g .... |
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.24 E-value=1.8e-05 Score=91.28 Aligned_cols=262 Identities=15% Similarity=0.125 Sum_probs=150.6
Q ss_pred eEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCC-CceeEEe
Q 003236 558 VESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENP-DYSLRTF 636 (837)
Q Consensus 558 V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~~-~~~~~~~ 636 (837)
++++||+|..-.|+.|-.-|.+.+|...+.+.......|..+|..+.|+++|..++|+..-|.|.+|..+-. ......+
T Consensus 62 atSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d~~g~~q~~~~ 141 (1416)
T KOG3617|consen 62 ATSLCWHPEEFVLAQGWEMGVSDVQKTNTTETHTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYDVIGEIQTSNI 141 (1416)
T ss_pred hhhhccChHHHHHhhccccceeEEEecCCceeeeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEeeeccccccchh
Confidence 567999999888999999999999998887777777889999999999999999999999999999988732 2111222
Q ss_pred eccc--c--ceEEEEEcCCCCe------EEEEEeCCCcEE-EEECCCCeeeeEEecCCCeeEEEEecCCCEEEEEEcCCe
Q 003236 637 TGHS--T--TVMSLDFHPSKED------LLCSCDNNSEIR-YWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENY 705 (837)
Q Consensus 637 ~~h~--~--~V~sl~fspdg~~------llasgs~Dg~I~-vwDl~t~~~i~~~~~~~~i~sl~~sp~g~~llags~dg~ 705 (837)
..|. . ...|...++++.. ..++|+ +..+- .++.+.....+.... . -.|+|..+++++.+|+
T Consensus 142 ~~hel~~~ltl~cfRL~~~~Ee~~~laKaaVtgD-e~alD~~fnwk~~~a~rs~~k-s------gv~~g~~F~~~~~~Gt 213 (1416)
T KOG3617|consen 142 MQHELNDQLTLWCFRLSYDREEKFKLAKAAVTGD-ESALDEPFNWKESLAERSDEK-S------GVPKGTEFLFAGKSGT 213 (1416)
T ss_pred hhhHhhceeeEEEEecCCChHHhhhhhhhhccCc-hhhhcccccCccchhhccccc-c------CCCCCcEEEEEcCCce
Confidence 2232 2 2344445555432 223443 33222 333332111111111 1 1467778888999999
Q ss_pred EEEEECCCC-eEEEEEc--------CCCCCEEEEEEcCCCCEEEEEeCC------eEEEEEcCCCCC-c--------eeE
Q 003236 706 ISILDVETQ-VCRLKLQ--------GHKNQVHSVCWNTSGEYLASVSDE------LVRVWSIGSGSK-G--------ECI 761 (837)
Q Consensus 706 I~iwDl~s~-~~~~~l~--------~h~~~V~sl~~spdg~~LasgsDg------~I~IwDl~s~~~-~--------~~i 761 (837)
|+..|-... ..+.... +....|.++.-.-...++..-..| .+++- .+.+.. + -.+
T Consensus 214 Vyyvdq~g~~~~V~k~dS~vQmLf~~~~eai~~i~e~lr~~l~~v~~~G~~ee~~~vk~s-gk~GgrqGgiA~sEssGvL 292 (1416)
T KOG3617|consen 214 VYYVDQNGRQRTVHKLDSEVQMLFMGYCEAISIIIEFLRDCLIFVLAKGTSEERCAVKVS-GKLGGRQGGIACSESSGVL 292 (1416)
T ss_pred EEEEcCCCcEEEEEEccchHHHHHhcccceEEEEeeeceeeEEEecCCCchHHhhhhhhc-cccCCccCccccccccccc
Confidence 988885432 2222211 111222222111111111111111 01110 000100 0 000
Q ss_pred E---Ee-ecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCc--------EEEe---ccCCCCeeEEEEeCCCCEEEE
Q 003236 762 H---EL-SCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENK--------TLTL---SAHDKLVSSLAASTVNGMVAS 826 (837)
Q Consensus 762 ~---~~-~~~~~~I~sv~fspdg~~L~sgs~dg~I~IwDl~s~~--------~~~l---~~h~~~V~sla~spdg~~LaS 826 (837)
. .+ -..+..+.++++...+..++.|...|.+.+|--.... ...+ ....+.|+.+.|.|-...++.
T Consensus 293 r~~eKyg~e~ge~~~c~cY~~~~~~l~agt~~gnv~~w~~v~~~f~g~p~~d~w~l~~~~e~~g~I~~i~Wg~~k~~~av 372 (1416)
T KOG3617|consen 293 RKSEKYGLELGEGILCMCYGEKEIRLWAGTKEGNVTIWLDVNKGFQGDPTIDVWTLNGKRESLGKISLIRWGPIKSTAAV 372 (1416)
T ss_pred cCCcchhhhcCCceEEEEEeccceEEEecccCCcEEEeeecCccccCCCCcceEEecCchhhccceEEEEeccccchhhh
Confidence 0 00 1135678999999999999999999999999532221 1122 234567999999986555444
Q ss_pred EE
Q 003236 827 AS 828 (837)
Q Consensus 827 gs 828 (837)
-+
T Consensus 373 n~ 374 (1416)
T KOG3617|consen 373 NT 374 (1416)
T ss_pred hh
Confidence 33
|
|
| >KOG2695 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.23 E-value=4e-06 Score=88.35 Aligned_cols=158 Identities=14% Similarity=0.199 Sum_probs=116.5
Q ss_pred EEEcC--CCCEEEEEECCCcEEEEeCCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCC----CceeE
Q 003236 561 CHFSP--DGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENP----DYSLR 634 (837)
Q Consensus 561 l~fSp--dg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~~----~~~~~ 634 (837)
++|+- .|-. ++.+.+-.|-+-|++++-.. .|. .++.|.++.|.-.+.+++.|+..|.|.++|++.. ..+..
T Consensus 217 CawSlni~gyh-fs~G~sqqv~L~nvetg~~q-sf~-sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~ 293 (425)
T KOG2695|consen 217 CAWSLNIMGYH-FSVGLSQQVLLTNVETGHQQ-SFQ-SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQ 293 (425)
T ss_pred hhhhhccceee-ecccccceeEEEEeeccccc-ccc-cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceE
Confidence 35553 2333 44555677889998886443 332 5677999999988999999999999999999875 33333
Q ss_pred EeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCee---eeEEecCCC---eeEEEEecCCCEEEEEEcCCeEEE
Q 003236 635 TFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSC---AGVFKCQSG---ATQMRFQPRLGRILAAAIENYISI 708 (837)
Q Consensus 635 ~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~---i~~~~~~~~---i~sl~~sp~g~~llags~dg~I~i 708 (837)
.+ -|...|+++.........+.+.+-+|+|++||++.-++ +..+..+.. -.-+.+.+..+.+++++.|...+|
T Consensus 294 rl-yh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRi 372 (425)
T KOG2695|consen 294 RL-YHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRI 372 (425)
T ss_pred EE-EcCcchhhhhhhccccceEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccccceEEEccCeeEEEE
Confidence 33 48899999887763345666778899999999998777 666653221 223445667788999999999999
Q ss_pred EECCCCeEEEEEcC
Q 003236 709 LDVETQVCRLKLQG 722 (837)
Q Consensus 709 wDl~s~~~~~~l~~ 722 (837)
|.++.+..+.++..
T Consensus 373 Wsl~~ghLl~tipf 386 (425)
T KOG2695|consen 373 WSLDSGHLLCTIPF 386 (425)
T ss_pred EecccCceeeccCC
Confidence 99999988887764
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=98.22 E-value=0.00019 Score=86.75 Aligned_cols=231 Identities=15% Similarity=0.195 Sum_probs=136.1
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeEEeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCee
Q 003236 596 HTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSC 675 (837)
Q Consensus 596 h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~ 675 (837)
..+.|.++.|.-+...++.+..+|.|.+-|..+.. ......-...|.+++|+||...++ ..+.+.+|.+- ..+..+
T Consensus 67 gd~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~--~eivg~vd~GI~aaswS~Dee~l~-liT~~~tll~m-T~~f~~ 142 (1265)
T KOG1920|consen 67 GDDEIVSVQFLADTNSICVITALGDIILVDPETLE--LEIVGNVDNGISAASWSPDEELLA-LITGRQTLLFM-TKDFEP 142 (1265)
T ss_pred CCcceEEEEEecccceEEEEecCCcEEEEcccccc--eeeeeeccCceEEEeecCCCcEEE-EEeCCcEEEEE-eccccc
Confidence 34689999999999999999999999999888754 344444567899999999987544 44445555443 222222
Q ss_pred eeEEec------CCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEe-----C
Q 003236 676 AGVFKC------QSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-----D 744 (837)
Q Consensus 676 i~~~~~------~~~i~sl~~sp~g~~llags~dg~I~iwDl~s~~~~~~l~~h~~~V~sl~~spdg~~Lasgs-----D 744 (837)
+..... .+....+-|-.....+ -| ..|.....+............-.+.=++|+|--||.++++.. +
T Consensus 143 i~E~~L~~d~~~~sk~v~VGwGrkeTqf-rg-s~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~ 220 (1265)
T KOG1920|consen 143 IAEKPLDADDERKSKFVNVGWGRKETQF-RG-SEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETG 220 (1265)
T ss_pred hhccccccccccccccceecccccceee-ec-chhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCC
Confidence 222111 1112222222211100 00 011111111111000000001122335689999999999843 4
Q ss_pred -CeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEc---CCeEEEEECCCCc---EE-EeccCCCCeeEEE
Q 003236 745 -ELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGC---YETLELWNMTENK---TL-TLSAHDKLVSSLA 816 (837)
Q Consensus 745 -g~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fspdg~~L~sgs~---dg~I~IwDl~s~~---~~-~l~~h~~~V~sla 816 (837)
..|+|||-. + ..-..-....+.-.+++|-|.|..+++... ++.|.+|.-+.-+ .. .+......|..++
T Consensus 221 ~RkirV~drE-g---~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~hg~f~l~~p~de~~ve~L~ 296 (1265)
T KOG1920|consen 221 TRKIRVYDRE-G---ALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLRHGEFVLPFPLDEKEVEELA 296 (1265)
T ss_pred ceeEEEeccc-c---hhhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEecCCccccccccCCcccccchheee
Confidence 689999976 3 111122223344578899999998888754 4479999865433 22 3334445599999
Q ss_pred EeCCCCEEEE---EECCCcEEEe
Q 003236 817 ASTVNGMVAS---ASHDKCVKIW 836 (837)
Q Consensus 817 ~spdg~~LaS---gs~DG~I~IW 836 (837)
|+.++.+||+ +.....|++|
T Consensus 297 Wns~sdiLAv~~~~~e~~~v~lw 319 (1265)
T KOG1920|consen 297 WNSNSDILAVVTSNLENSLVQLW 319 (1265)
T ss_pred ecCCCCceeeeecccccceEEEE
Confidence 9999999987 4444559998
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.20 E-value=1.9e-05 Score=91.07 Aligned_cols=261 Identities=10% Similarity=0.072 Sum_probs=150.8
Q ss_pred EEEEEcCCCCEEEEEE----CCCcEEEEeCCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeE
Q 003236 559 ESCHFSPDGKLLATGG----HDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLR 634 (837)
Q Consensus 559 ~sl~fSpdg~~Lasgs----~Dg~I~VWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~~~~~~~ 634 (837)
+-..|+|...+||+++ ..|.|.||- ++|++-..+. ..-.++++||+|..-.|+.|-.-|.+.+|...+.+. ..
T Consensus 19 ti~SWHPsePlfAVA~fS~er~GSVtIfa-dtGEPqr~Vt-~P~hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~-ht 95 (1416)
T KOG3617|consen 19 TISSWHPSEPLFAVASFSPERGGSVTIFA-DTGEPQRDVT-YPVHATSLCWHPEEFVLAQGWEMGVSDVQKTNTTET-HT 95 (1416)
T ss_pred cccccCCCCceeEEEEecCCCCceEEEEe-cCCCCCcccc-cceehhhhccChHHHHHhhccccceeEEEecCCcee-ee
Confidence 3467999999999886 358898884 5565443332 223367799999988899999999999999987553 55
Q ss_pred EeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeeEE-----ecCCCe--eEEEEecCCC------EEEEEE
Q 003236 635 TFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVF-----KCQSGA--TQMRFQPRLG------RILAAA 701 (837)
Q Consensus 635 ~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~-----~~~~~i--~sl~~sp~g~------~llags 701 (837)
....|..+|..+.|+++|. .++++..-|.|.+|....-..+... .....+ .|...++++. ..++.+
T Consensus 96 v~~th~a~i~~l~wS~~G~-~l~t~d~~g~v~lwr~d~~g~~q~~~~~~hel~~~ltl~cfRL~~~~Ee~~~laKaaVtg 174 (1416)
T KOG3617|consen 96 VVETHPAPIQGLDWSHDGT-VLMTLDNPGSVHLWRYDVIGEIQTSNIMQHELNDQLTLWCFRLSYDREEKFKLAKAAVTG 174 (1416)
T ss_pred eccCCCCCceeEEecCCCC-eEEEcCCCceeEEEEeeeccccccchhhhhHhhceeeEEEEecCCChHHhhhhhhhhccC
Confidence 5667999999999999987 4559999999999987632222211 112233 3444455532 233333
Q ss_pred cCCeEE-EEECCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCC
Q 003236 702 IENYIS-ILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPT 779 (837)
Q Consensus 702 ~dg~I~-iwDl~s~~~~~~l~~h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fspd 779 (837)
.++.+- .++.+......... |. =.|+|..++.+. +|+|+-.|-.. .+....+.... ..+-|.+.
T Consensus 175 De~alD~~fnwk~~~a~rs~~-ks-------gv~~g~~F~~~~~~GtVyyvdq~g----~~~~V~k~dS~--vQmLf~~~ 240 (1416)
T KOG3617|consen 175 DESALDEPFNWKESLAERSDE-KS-------GVPKGTEFLFAGKSGTVYYVDQNG----RQRTVHKLDSE--VQMLFMGY 240 (1416)
T ss_pred chhhhcccccCccchhhcccc-cc-------CCCCCcEEEEEcCCceEEEEcCCC----cEEEEEEccch--HHHHHhcc
Confidence 333332 33333211111111 11 125666555555 88887777432 22222221111 11222232
Q ss_pred CCEEEEEEcCCeEEEEEC-CCCc---------------------------EE----E-eccCCCCeeEEEEeCCCCEEEE
Q 003236 780 FPSLLVIGCYETLELWNM-TENK---------------------------TL----T-LSAHDKLVSSLAASTVNGMVAS 826 (837)
Q Consensus 780 g~~L~sgs~dg~I~IwDl-~s~~---------------------------~~----~-l~~h~~~V~sla~spdg~~LaS 826 (837)
...|++...+-++.+|-+ .+|. ++ . -......++|++++..+..|+.
T Consensus 241 ~eai~~i~e~lr~~l~~v~~~G~~ee~~~vk~sgk~GgrqGgiA~sEssGvLr~~eKyg~e~ge~~~c~cY~~~~~~l~a 320 (1416)
T KOG3617|consen 241 CEAISIIIEFLRDCLIFVLAKGTSEERCAVKVSGKLGGRQGGIACSESSGVLRKSEKYGLELGEGILCMCYGEKEIRLWA 320 (1416)
T ss_pred cceEEEEeeeceeeEEEecCCCchHHhhhhhhccccCCccCccccccccccccCCcchhhhcCCceEEEEEeccceEEEe
Confidence 222222222222222211 1110 00 0 0123457999999999999999
Q ss_pred EECCCcEEEeC
Q 003236 827 ASHDKCVKIWK 837 (837)
Q Consensus 827 gs~DG~I~IWd 837 (837)
|...|.+.+|.
T Consensus 321 gt~~gnv~~w~ 331 (1416)
T KOG3617|consen 321 GTKEGNVTIWL 331 (1416)
T ss_pred cccCCcEEEee
Confidence 99999999994
|
|
| >PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide | Back alignment and domain information |
|---|
Probab=98.19 E-value=4.9e-06 Score=61.03 Aligned_cols=39 Identities=36% Similarity=0.548 Sum_probs=36.9
Q ss_pred CeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEE
Q 003236 587 FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWD 625 (837)
Q Consensus 587 ~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWD 625 (837)
++++.++.+|.+.|++|+|+|++.+|++++.|+.|++||
T Consensus 1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred CeEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 467889999999999999999999999999999999997
|
WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g .... |
| >COG3391 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.18 E-value=0.00053 Score=77.51 Aligned_cols=220 Identities=13% Similarity=0.108 Sum_probs=155.3
Q ss_pred eEEEEEcCCCCE-EEEEECCCcEEEEeCCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeC---CCeEEEEEcCCCCcee
Q 003236 558 VESCHFSPDGKL-LATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA---DRTVRVWDTENPDYSL 633 (837)
Q Consensus 558 V~sl~fSpdg~~-Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~---Dg~I~IWDl~~~~~~~ 633 (837)
-.++++++++.. +++...++.|.+.|..+.+....+..-. ....++|+++++.++++.. ++++.+.|..+.....
T Consensus 76 p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~-~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~ 154 (381)
T COG3391 76 PAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVGL-GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTA 154 (381)
T ss_pred ccceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeecc-CCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEE
Confidence 346788888874 4555556899999988877776664332 6778999999988877766 6889999988876544
Q ss_pred EEeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeee-----EEecCCCeeEEEEecCCCEEEEEEcC---Ce
Q 003236 634 RTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAG-----VFKCQSGATQMRFQPRLGRILAAAIE---NY 705 (837)
Q Consensus 634 ~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~-----~~~~~~~i~sl~~sp~g~~llags~d---g~ 705 (837)
. ...-..+ ..+++.|++..++++-..++.|.+.|........ ..........+.+.+++.++++.... +.
T Consensus 155 ~-~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~ 232 (381)
T COG3391 155 T-IPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNN 232 (381)
T ss_pred E-EecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceeccccccccccCCCCceEEECCCCCEEEEEeccCCCce
Confidence 4 3332234 8999999999888777789999999987766653 23334556789999999987777665 59
Q ss_pred EEEEECCCCeEEEEEcCCCC-CEEEEEEcCCCCEEEEEe--CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCC
Q 003236 706 ISILDVETQVCRLKLQGHKN-QVHSVCWNTSGEYLASVS--DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTF 780 (837)
Q Consensus 706 I~iwDl~s~~~~~~l~~h~~-~V~sl~~spdg~~Lasgs--Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fspdg 780 (837)
+...|..++........-.. ....+.++|+|.++.+.. .+.+.+.|..+......+.........+..+++.+..
T Consensus 233 v~~id~~~~~v~~~~~~~~~~~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 310 (381)
T COG3391 233 VLKIDTATGNVTATDLPVGSGAPRGVAVDPAGKAAYVANSQGGTVSVIDGATDRVVKTGPTGNEALGEPVSIAISPLY 310 (381)
T ss_pred EEEEeCCCceEEEeccccccCCCCceeECCCCCEEEEEecCCCeEEEEeCCCCceeeeecccccccccceeccceeec
Confidence 99999998877665222222 566789999999998886 5789999988763222222222223345555655544
|
|
| >PRK02888 nitrous-oxide reductase; Validated | Back alignment and domain information |
|---|
Probab=98.17 E-value=0.00015 Score=84.22 Aligned_cols=215 Identities=11% Similarity=0.059 Sum_probs=133.2
Q ss_pred EcCCCCEEEEE-ECCCcEEEEeCCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCC----eEEEEEcCCCCceeEEee
Q 003236 563 FSPDGKLLATG-GHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADR----TVRVWDTENPDYSLRTFT 637 (837)
Q Consensus 563 fSpdg~~Lasg-s~Dg~I~VWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg----~I~IWDl~~~~~~~~~~~ 637 (837)
+++||+.+... -..+.+.+.|.++.+....+..- +....+.++++++++++.+.+. ++..-+..+... +..+.
T Consensus 200 lpnDGk~l~~~~ey~~~vSvID~etmeV~~qV~Vd-gnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~-~vvfn 277 (635)
T PRK02888 200 LPNDGKDLDDPKKYRSLFTAVDAETMEVAWQVMVD-GNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDW-VVVFN 277 (635)
T ss_pred cCCCCCEeecccceeEEEEEEECccceEEEEEEeC-CCcccceECCCCCEEEEeccCcccCcceeeeccccCce-EEEEc
Confidence 34566544322 23456777788887777666432 2456788999999998886432 333333322111 11111
Q ss_pred ccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCC-----CeeeeEEecCCCeeEEEEecCCCEEEEEEc-CCeEEEEEC
Q 003236 638 GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN-----GSCAGVFKCQSGATQMRFQPRLGRILAAAI-ENYISILDV 711 (837)
Q Consensus 638 ~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t-----~~~i~~~~~~~~i~sl~~sp~g~~llags~-dg~I~iwDl 711 (837)
- ..+ -.+.++|+..++ .++.|.++|.++ .+.+..+........+.++|||+++++++. ++.|.|+|+
T Consensus 278 i--~~i--ea~vkdGK~~~V---~gn~V~VID~~t~~~~~~~v~~yIPVGKsPHGV~vSPDGkylyVanklS~tVSVIDv 350 (635)
T PRK02888 278 I--ARI--EEAVKAGKFKTI---GGSKVPVVDGRKAANAGSALTRYVPVPKNPHGVNTSPDGKYFIANGKLSPTVTVIDV 350 (635)
T ss_pred h--HHH--HHhhhCCCEEEE---CCCEEEEEECCccccCCcceEEEEECCCCccceEECCCCCEEEEeCCCCCcEEEEEC
Confidence 0 000 123456665554 267899999998 567788888889999999999999888776 789999999
Q ss_pred CCCeE------------EEEEcCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCC------CCC-ceeEEEeecCCCce
Q 003236 712 ETQVC------------RLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGS------GSK-GECIHELSCTGNKF 771 (837)
Q Consensus 712 ~s~~~------------~~~l~~h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s------~~~-~~~i~~~~~~~~~I 771 (837)
.+.+. +.+..- .......+|+++|..+.+.. |..|..|++.. +.. ...+..+..|..+.
T Consensus 351 ~k~k~~~~~~~~~~~~vvaevev-GlGPLHTaFDg~G~aytslf~dsqv~kwn~~~a~~~~~g~~~~~v~~k~dV~y~pg 429 (635)
T PRK02888 351 RKLDDLFDGKIKPRDAVVAEPEL-GLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEAAIRAYKGEKVDPIVQKLDVHYQPG 429 (635)
T ss_pred hhhhhhhhccCCccceEEEeecc-CCCcceEEECCCCCEEEeEeecceeEEEehHHHHHHhccccCCcceecccCCCccc
Confidence 87542 333332 22334578999998777777 99999999875 111 13444444443332
Q ss_pred EEEE-----EeCCCCEEEEEE
Q 003236 772 HSCV-----FHPTFPSLLVIG 787 (837)
Q Consensus 772 ~sv~-----fspdg~~L~sgs 787 (837)
...+ -.++|++|++..
T Consensus 430 h~~~~~g~t~~~dgk~l~~~n 450 (635)
T PRK02888 430 HNHASMGETKEADGKWLVSLN 450 (635)
T ss_pred eeeecCCCcCCCCCCEEEEcc
Confidence 2222 356677666654
|
|
| >COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.15 E-value=9.2e-05 Score=84.25 Aligned_cols=189 Identities=12% Similarity=0.197 Sum_probs=126.7
Q ss_pred eEEeeccccceEEEEEcCCCCeEEEEEeCC---CcEEEEECCCCeeeeEEecCCCeeEEEEecCCCEEEEEEc-CC--eE
Q 003236 633 LRTFTGHSTTVMSLDFHPSKEDLLCSCDNN---SEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAI-EN--YI 706 (837)
Q Consensus 633 ~~~~~~h~~~V~sl~fspdg~~llasgs~D---g~I~vwDl~t~~~i~~~~~~~~i~sl~~sp~g~~llags~-dg--~I 706 (837)
...+......+..-+|+|++..+.+..-.. ..++++|+.+++........+.-....|+|||+.|+.+.. |+ .|
T Consensus 185 ~~~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~~g~~~~P~fspDG~~l~f~~~rdg~~~i 264 (425)
T COG0823 185 QQKLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNFNGNNGAPAFSPDGSKLAFSSSRDGSPDI 264 (425)
T ss_pred eeEecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeeccCCccCCccCCCCCCEEEEEECCCCCccE
Confidence 344444456677888999988766554333 3599999999988888877777788899999998877664 44 67
Q ss_pred EEEECCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEe--CC--eEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCE
Q 003236 707 SILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS--DE--LVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPS 782 (837)
Q Consensus 707 ~iwDl~s~~~~~~l~~h~~~V~sl~~spdg~~Lasgs--Dg--~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fspdg~~ 782 (837)
+++|+..+.... +....+.-+.-.|+|||++|+..+ .| .|.++++..... ..+......-..-.|+|||++
T Consensus 265 y~~dl~~~~~~~-Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~----~riT~~~~~~~~p~~SpdG~~ 339 (425)
T COG0823 265 YLMDLDGKNLPR-LTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQV----TRLTFSGGGNSNPVWSPDGDK 339 (425)
T ss_pred EEEcCCCCccee-cccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCce----eEeeccCCCCcCccCCCCCCE
Confidence 888888776333 443344444678999999999888 34 577777766532 222222333337789999999
Q ss_pred EEEEEcC-C--eEEEEECCCCcEEEeccCCCCeeEEEEeCCCCEEEE
Q 003236 783 LLVIGCY-E--TLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVAS 826 (837)
Q Consensus 783 L~sgs~d-g--~I~IwDl~s~~~~~l~~h~~~V~sla~spdg~~LaS 826 (837)
|+..+.. | .|.++|+.++..+....+.......+|.++++.|+.
T Consensus 340 i~~~~~~~g~~~i~~~~~~~~~~~~~lt~~~~~e~ps~~~ng~~i~~ 386 (425)
T COG0823 340 IVFESSSGGQWDIDKNDLASGGKIRILTSTYLNESPSWAPNGRMIMF 386 (425)
T ss_pred EEEEeccCCceeeEEeccCCCCcEEEccccccCCCCCcCCCCceEEE
Confidence 9988854 3 477788776664444344444444555566554443
|
|
| >KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=98.13 E-value=0.00032 Score=71.85 Aligned_cols=150 Identities=11% Similarity=-0.027 Sum_probs=117.8
Q ss_pred EEcCCCCeEEEEEeCCCcEEEEECCCCeeeeEEecCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEcCCCCC
Q 003236 647 DFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQ 726 (837)
Q Consensus 647 ~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~~~~i~sl~~sp~g~~llags~dg~I~iwDl~s~~~~~~l~~h~~~ 726 (837)
...++.+.+++.|+..+.+...|..+|+.+........+.+-+.. -+++++.|+..|.+++.+.+++.....+...+.-
T Consensus 17 VV~~dskT~v~igSHs~~~~avd~~sG~~~We~ilg~RiE~sa~v-vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~v 95 (354)
T KOG4649|consen 17 VVCNDSKTLVVIGSHSGIVIAVDPQSGNLIWEAILGVRIECSAIV-VGDFVVLGCYSGGLYFLCVKTGSQIWNFVILETV 95 (354)
T ss_pred EEecCCceEEEEecCCceEEEecCCCCcEEeehhhCceeeeeeEE-ECCEEEEEEccCcEEEEEecchhheeeeeehhhh
Confidence 344555778889999999999999999998887777777766555 4678999999999999999999877776643332
Q ss_pred EEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCC
Q 003236 727 VHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTEN 800 (837)
Q Consensus 727 V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fspdg~~L~sgs~dg~I~IwDl~s~ 800 (837)
-......+++.++..++ |+..+..|.++. .++...+..+....+-++.|....|+++...|.|.-...+..
T Consensus 96 k~~a~~d~~~glIycgshd~~~yalD~~~~---~cVykskcgG~~f~sP~i~~g~~sly~a~t~G~vlavt~~~~ 167 (354)
T KOG4649|consen 96 KVRAQCDFDGGLIYCGSHDGNFYALDPKTY---GCVYKSKCGGGTFVSPVIAPGDGSLYAAITAGAVLAVTKNPY 167 (354)
T ss_pred ccceEEcCCCceEEEecCCCcEEEeccccc---ceEEecccCCceeccceecCCCceEEEEeccceEEEEccCCC
Confidence 23345678899999999 999999999887 788888888887888888885566777777776665565555
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.12 E-value=0.00049 Score=78.66 Aligned_cols=221 Identities=12% Similarity=0.147 Sum_probs=120.2
Q ss_pred CCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEE-EcCCCCc
Q 003236 553 ASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVW-DTENPDY 631 (837)
Q Consensus 553 ~H~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IW-Dl~~~~~ 631 (837)
...-....+.++|+|++++++ .||...||.....+.... +.-...+|...+ .+|+-...++|.|+ ++....
T Consensus 30 ~~~~~p~~ls~npngr~v~V~-g~geY~iyt~~~~r~k~~-----G~g~~~vw~~~n-~yAv~~~~~~I~I~kn~~~~~- 101 (443)
T PF04053_consen 30 SCEIYPQSLSHNPNGRFVLVC-GDGEYEIYTALAWRNKAF-----GSGLSFVWSSRN-RYAVLESSSTIKIYKNFKNEV- 101 (443)
T ss_dssp E-SS--SEEEE-TTSSEEEEE-ETTEEEEEETTTTEEEEE-----EE-SEEEE-TSS-EEEEE-TTS-EEEEETTEE-T-
T ss_pred CCCcCCeeEEECCCCCEEEEE-cCCEEEEEEccCCccccc-----CceeEEEEecCc-cEEEEECCCeEEEEEcCcccc-
Confidence 344457889999999999985 478888988655554432 334577888854 56777678899996 343222
Q ss_pred eeEEeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeeEEecCCCeeEEEEecCCCEEEEEEcCCeEEEEEC
Q 003236 632 SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDV 711 (837)
Q Consensus 632 ~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~~~~i~sl~~sp~g~~llags~dg~I~iwDl 711 (837)
...+.. ...+..|-. |. +|+..+ ++.|.+||+.+++.++.+.... |..+.|++++.+++..+.+ .+.|++.
T Consensus 102 -~k~i~~-~~~~~~If~---G~-LL~~~~-~~~i~~yDw~~~~~i~~i~v~~-vk~V~Ws~~g~~val~t~~-~i~il~~ 172 (443)
T PF04053_consen 102 -VKSIKL-PFSVEKIFG---GN-LLGVKS-SDFICFYDWETGKLIRRIDVSA-VKYVIWSDDGELVALVTKD-SIYILKY 172 (443)
T ss_dssp -T------SS-EEEEE----SS-SEEEEE-TTEEEEE-TTT--EEEEESS-E--EEEEE-TTSSEEEEE-S--SEEEEEE
T ss_pred -ceEEcC-CcccceEEc---Cc-EEEEEC-CCCEEEEEhhHcceeeEEecCC-CcEEEEECCCCEEEEEeCC-eEEEEEe
Confidence 112221 112333332 55 443444 4589999999999999998653 8999999999888888754 5666554
Q ss_pred CCC-----------eEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCC
Q 003236 712 ETQ-----------VCRLKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTF 780 (837)
Q Consensus 712 ~s~-----------~~~~~l~~h~~~V~sl~~spdg~~LasgsDg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fspdg 780 (837)
+.. .....+......|.+.+|..+ -+|++... .|+. +..+ ....+..-..++.-+.+.+..
T Consensus 173 ~~~~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~d-~fiYtT~~-~lkY--l~~G----e~~~i~~ld~~~yllgy~~~~ 244 (443)
T PF04053_consen 173 NLEAVAAIPEEGVEDAFELIHEISERIKSGCWVED-CFIYTTSN-HLKY--LVNG----ETGIIAHLDKPLYLLGYLPKE 244 (443)
T ss_dssp -HHHHHHBTTTB-GGGEEEEEEE-S--SEEEEETT-EEEEE-TT-EEEE--EETT----EEEEEEE-SS--EEEEEETTT
T ss_pred cchhcccccccCchhceEEEEEecceeEEEEEEcC-EEEEEcCC-eEEE--EEcC----CcceEEEcCCceEEEEEEccC
Confidence 332 012222222567899999876 34443335 7776 3333 222333335677778888877
Q ss_pred CEEEEEEcCCeEEEEECC
Q 003236 781 PSLLVIGCYETLELWNMT 798 (837)
Q Consensus 781 ~~L~sgs~dg~I~IwDl~ 798 (837)
..+++...++.|..+.+.
T Consensus 245 ~~ly~~Dr~~~v~~~~ld 262 (443)
T PF04053_consen 245 NRLYLIDRDGNVISYELD 262 (443)
T ss_dssp TEEEEE-TT--EEEEE--
T ss_pred CEEEEEECCCCEEEEEEC
Confidence 788888888888877664
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase | Back alignment and domain information |
|---|
Probab=98.12 E-value=0.002 Score=69.24 Aligned_cols=225 Identities=14% Similarity=0.139 Sum_probs=131.9
Q ss_pred CCCCEEEEEECCCcEEEEeCC-CCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeEE--------
Q 003236 565 PDGKLLATGGHDKKAVLWCTE-SFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRT-------- 635 (837)
Q Consensus 565 pdg~~Lasgs~Dg~I~VWd~~-t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~~~~~~~~-------- 635 (837)
..++.|+.|+.+| |+++++. ..+..... +...|..+...++-+.|++-+ |+.++++++..-......
T Consensus 5 ~~~~~L~vGt~~G-l~~~~~~~~~~~~~i~--~~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~ 80 (275)
T PF00780_consen 5 SWGDRLLVGTEDG-LYVYDLSDPSKPTRIL--KLSSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKS 80 (275)
T ss_pred cCCCEEEEEECCC-EEEEEecCCccceeEe--ecceEEEEEEecccCEEEEEc-CCccEEEEchhhcccccccccccccc
Confidence 4577999999988 9999983 33333333 233499999999877766664 599999998753321110
Q ss_pred -----eeccccceEEEE--EcCCCCeEEEEEeCCCcEEEEECCCC-----eeeeEEecCCCeeEEEEecCCCEEEEEEcC
Q 003236 636 -----FTGHSTTVMSLD--FHPSKEDLLCSCDNNSEIRYWSINNG-----SCAGVFKCQSGATQMRFQPRLGRILAAAIE 703 (837)
Q Consensus 636 -----~~~h~~~V~sl~--fspdg~~llasgs~Dg~I~vwDl~t~-----~~i~~~~~~~~i~sl~~sp~g~~llags~d 703 (837)
.......+..++ -...+...++.+. ...|.+|..... +..+.+.....+..++|. ++.++++. .
T Consensus 81 ~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~-kk~i~i~~~~~~~~~f~~~~ke~~lp~~~~~i~~~--~~~i~v~~-~ 156 (275)
T PF00780_consen 81 RSLPTKLPETKGVSFFAVNGGHEGSRRLCVAV-KKKILIYEWNDPRNSFSKLLKEISLPDPPSSIAFL--GNKICVGT-S 156 (275)
T ss_pred ccccccccccCCeeEEeeccccccceEEEEEE-CCEEEEEEEECCcccccceeEEEEcCCCcEEEEEe--CCEEEEEe-C
Confidence 111223444444 1233344444443 558888877542 566777888999999999 45566665 4
Q ss_pred CeEEEEECCCCeEEEEEcCC------------CCCEEEEEEcCCCCEEEEEeCCeEEEEEcCCCCCceeEEEeecCCCce
Q 003236 704 NYISILDVETQVCRLKLQGH------------KNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCTGNKF 771 (837)
Q Consensus 704 g~I~iwDl~s~~~~~~l~~h------------~~~V~sl~~spdg~~LasgsDg~I~IwDl~s~~~~~~i~~~~~~~~~I 771 (837)
+...++|+.++.....+... ..++..+.. +++++|++ .|..-.+.|.... ... ...+. -....
T Consensus 157 ~~f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~e~Ll~-~~~~g~fv~~~G~-~~r-~~~i~-W~~~p 231 (275)
T PF00780_consen 157 KGFYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQL-SDNEFLLC-YDNIGVFVNKNGE-PSR-KSTIQ-WSSAP 231 (275)
T ss_pred CceEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEe-CCceEEEE-ecceEEEEcCCCC-cCc-ccEEE-cCCch
Confidence 55888899876554333211 123333333 34566654 4443444444332 111 11111 12344
Q ss_pred EEEEEeCCCCEEEEEEcCCeEEEEECCCCcEEEe
Q 003236 772 HSCVFHPTFPSLLVIGCYETLELWNMTENKTLTL 805 (837)
Q Consensus 772 ~sv~fspdg~~L~sgs~dg~I~IwDl~s~~~~~l 805 (837)
..+++. .++|++.+. +.|.||++.+++++..
T Consensus 232 ~~~~~~--~pyli~~~~-~~iEV~~~~~~~lvQ~ 262 (275)
T PF00780_consen 232 QSVAYS--SPYLIAFSS-NSIEVRSLETGELVQT 262 (275)
T ss_pred hEEEEE--CCEEEEECC-CEEEEEECcCCcEEEE
Confidence 555553 346777666 4599999999988743
|
These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity |
| >TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family | Back alignment and domain information |
|---|
Probab=98.10 E-value=0.0027 Score=74.71 Aligned_cols=186 Identities=10% Similarity=0.027 Sum_probs=114.9
Q ss_pred CCEEEEEECCCcEEEEeCCCCeEEEEeccCC-CCeE---E-------EEEcCCCCEEEEEeCCCeEEEEEcCCCCceeEE
Q 003236 567 GKLLATGGHDKKAVLWCTESFTVKSTLEEHT-QWIT---D-------VRFSPSLSRLATSSADRTVRVWDTENPDYSLRT 635 (837)
Q Consensus 567 g~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~-~~I~---~-------l~fspdg~~Latgs~Dg~I~IWDl~~~~~~~~~ 635 (837)
+..|++++.++.|+-+|..+++.+-.+.... ..+. + +++ .+..|+.++.|+.|..+|..+++.+-..
T Consensus 69 ~g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av--~~~~v~v~t~dg~l~ALDa~TGk~~W~~ 146 (527)
T TIGR03075 69 DGVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVAL--YDGKVFFGTLDARLVALDAKTGKVVWSK 146 (527)
T ss_pred CCEEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceE--ECCEEEEEcCCCEEEEEECCCCCEEeec
Confidence 4467777778899999999999887664211 1111 1 122 2346778889999999999998864332
Q ss_pred eec-cc--cceEE-EEEcCCCCeEEEEEe-----CCCcEEEEECCCCeeeeEEecCCC----------------------
Q 003236 636 FTG-HS--TTVMS-LDFHPSKEDLLCSCD-----NNSEIRYWSINNGSCAGVFKCQSG---------------------- 684 (837)
Q Consensus 636 ~~~-h~--~~V~s-l~fspdg~~llasgs-----~Dg~I~vwDl~t~~~i~~~~~~~~---------------------- 684 (837)
-.. +. ..+.+ -.+. + ..+++..+ .+|.|..+|.++|+.+..+.....
T Consensus 147 ~~~~~~~~~~~tssP~v~-~-g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~~p~~~~~~~~~~~~~~~~~~~~tw~ 224 (527)
T TIGR03075 147 KNGDYKAGYTITAAPLVV-K-GKVITGISGGEFGVRGYVTAYDAKTGKLVWRRYTVPGDMGYLDKADKPVGGEPGAKTWP 224 (527)
T ss_pred ccccccccccccCCcEEE-C-CEEEEeecccccCCCcEEEEEECCCCceeEeccCcCCCcccccccccccccccccCCCC
Confidence 211 11 11111 1111 2 33443322 268999999999998876653110
Q ss_pred -----------eeEEEEecCCCEEEEEEcC----------------CeEEEEECCCCeEEEEEcCCCCCE---------E
Q 003236 685 -----------ATQMRFQPRLGRILAAAIE----------------NYISILDVETQVCRLKLQGHKNQV---------H 728 (837)
Q Consensus 685 -----------i~sl~~sp~g~~llags~d----------------g~I~iwDl~s~~~~~~l~~h~~~V---------~ 728 (837)
-..+.+.+..+.++.+... ..|.-.|+++++.+..+......+ .
T Consensus 225 ~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~TG~~~W~~Q~~~~D~wD~d~~~~p~ 304 (527)
T TIGR03075 225 GDAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDTGKIKWHYQTTPHDEWDYDGVNEMI 304 (527)
T ss_pred CCccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccccCCEEEeeeCCCCCCccccCCCCcE
Confidence 1134667767777776622 168888999999988876522211 1
Q ss_pred EEEEcCCCC---EEEEEe-CCeEEEEEcCCCC
Q 003236 729 SVCWNTSGE---YLASVS-DELVRVWSIGSGS 756 (837)
Q Consensus 729 sl~~spdg~---~Lasgs-Dg~I~IwDl~s~~ 756 (837)
-+.+..+|+ .++.+. +|.+++.|.++++
T Consensus 305 l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~ 336 (527)
T TIGR03075 305 LFDLKKDGKPRKLLAHADRNGFFYVLDRTNGK 336 (527)
T ss_pred EEEeccCCcEEEEEEEeCCCceEEEEECCCCc
Confidence 222334665 666666 9999999999884
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens. |
| >PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators [] | Back alignment and domain information |
|---|
Probab=98.08 E-value=0.001 Score=70.10 Aligned_cols=199 Identities=12% Similarity=0.170 Sum_probs=115.6
Q ss_pred EeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeeEEecC--CCeeEEEEecCCCEEEEEEcCCeEEEEECC
Q 003236 635 TFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ--SGATQMRFQPRLGRILAAAIENYISILDVE 712 (837)
Q Consensus 635 ~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~~--~~i~sl~~sp~g~~llags~dg~I~iwDl~ 712 (837)
.+.+-...+..|+|+|+.+.++++....+.|..++.. |+.++.+... +....|++..++.++++.-.++.+.++++.
T Consensus 16 ~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~-G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~ 94 (248)
T PF06977_consen 16 PLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSLD-GKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTID 94 (248)
T ss_dssp E-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEETT---EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE-
T ss_pred ECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcCC-CCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEEe
Confidence 4445556799999999989999999999999999975 8888887763 457889998776555544457899999884
Q ss_pred CC------eEEEEEc-----CCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCC--CCCceeEEEe------ecCCCceE
Q 003236 713 TQ------VCRLKLQ-----GHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGS--GSKGECIHEL------SCTGNKFH 772 (837)
Q Consensus 713 s~------~~~~~l~-----~h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s--~~~~~~i~~~------~~~~~~I~ 772 (837)
.. .....+. .+...+..++|++.+..|+++. ..-..||.+.. ......+... ......+.
T Consensus 95 ~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S 174 (248)
T PF06977_consen 95 DDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLS 174 (248)
T ss_dssp ---TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS---
T ss_pred ccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceecccc
Confidence 31 1111221 2445689999999877777776 55566666654 1111111111 11335678
Q ss_pred EEEEeCCCCEEEEEEcC-CeEEEEECCCCcEE---Eecc--C-----CCCeeEEEEeCCCCEEEEEECCCcEEEe
Q 003236 773 SCVFHPTFPSLLVIGCY-ETLELWNMTENKTL---TLSA--H-----DKLVSSLAASTVNGMVASASHDKCVKIW 836 (837)
Q Consensus 773 sv~fspdg~~L~sgs~d-g~I~IwDl~s~~~~---~l~~--h-----~~~V~sla~spdg~~LaSgs~DG~I~IW 836 (837)
.++++|....|++-+.. ..|.++| .+|+++ .+.. | -...-.|+|.++|.+.++ ++-+..++|
T Consensus 175 ~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIv-sEpNlfy~f 247 (248)
T PF06977_consen 175 GLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIV-SEPNLFYRF 247 (248)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEE-ETTTEEEEE
T ss_pred ceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEEE-cCCceEEEe
Confidence 99999987776666654 4888899 566655 2222 1 124678999999865554 466666655
|
Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A. |
| >PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=98.07 E-value=0.0024 Score=71.51 Aligned_cols=229 Identities=17% Similarity=0.193 Sum_probs=134.2
Q ss_pred CCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEeccC-----------------CCCeEEEEEcCCCCEEEEEeC
Q 003236 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEH-----------------TQWITDVRFSPSLSRLATSSA 617 (837)
Q Consensus 555 ~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h-----------------~~~I~~l~fspdg~~Latgs~ 617 (837)
...+....|||||+.+|... ++.|++++..++......... -+.-..+.|+||+++|+....
T Consensus 42 ~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~ 120 (353)
T PF00930_consen 42 PPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQETQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRF 120 (353)
T ss_dssp ETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEEESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEE
T ss_pred ccccccceeecCCCeeEEEe-cCceEEEECCCCCeEEeccccceeEEcCccceeccccccccccceEECCCCCEEEEEEE
Confidence 56788999999999999886 688999998877544322111 122356889999999887643
Q ss_pred CC------------------------------------eEEEEEcCCCCce-eEEe---eccccceEEEEEcCCCCeEEE
Q 003236 618 DR------------------------------------TVRVWDTENPDYS-LRTF---TGHSTTVMSLDFHPSKEDLLC 657 (837)
Q Consensus 618 Dg------------------------------------~I~IWDl~~~~~~-~~~~---~~h~~~V~sl~fspdg~~lla 657 (837)
|. .+.|+|+.+++.. +... ..-...+..+.|.+++..+++
T Consensus 121 d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~ 200 (353)
T PF00930_consen 121 DEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWV 200 (353)
T ss_dssp E-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEE
T ss_pred CCcCCceEEeeccCCccccCCcccccccCCCCCcCCceEEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEEE
Confidence 21 1334555544321 1111 123456788899988773443
Q ss_pred E-EeCC---CcEEEEECCCCeeeeEEec--CCC---eeEEEEe-cCCCEEEEEE-cCC--eEEEEECCCCeEEEEEcCCC
Q 003236 658 S-CDNN---SEIRYWSINNGSCAGVFKC--QSG---ATQMRFQ-PRLGRILAAA-IEN--YISILDVETQVCRLKLQGHK 724 (837)
Q Consensus 658 s-gs~D---g~I~vwDl~t~~~i~~~~~--~~~---i~sl~~s-p~g~~llags-~dg--~I~iwDl~s~~~~~~l~~h~ 724 (837)
. ...+ ..+.++|..++.+...+.. ..- .....+. +++..++..+ .+| .|.+++...+... .+....
T Consensus 201 ~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~~~-~lT~G~ 279 (353)
T PF00930_consen 201 QWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYDPPHFLGPDGNEFLWISERDGYRHLYLYDLDGGKPR-QLTSGD 279 (353)
T ss_dssp EEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEETTSSEEEEEEETTSSEEE-ESS-SS
T ss_pred EEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeecccccccCCCCEEEEEEEcCCCcEEEEEccccccee-ccccCc
Confidence 3 3333 2567778877665544432 222 2355555 6666655444 455 5777787777644 555455
Q ss_pred CCEEE-EEEcCCCCEEEEEe--CC----eEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEc
Q 003236 725 NQVHS-VCWNTSGEYLASVS--DE----LVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGC 788 (837)
Q Consensus 725 ~~V~s-l~~spdg~~Lasgs--Dg----~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fspdg~~L~sgs~ 788 (837)
-.|+. +.|++++..|+..+ ++ .|+..++..+ ..+..+.+....-..+.|+|++++++....
T Consensus 280 ~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~---~~~~~LT~~~~~~~~~~~Spdg~y~v~~~s 347 (353)
T PF00930_consen 280 WEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSG---GEPKCLTCEDGDHYSASFSPDGKYYVDTYS 347 (353)
T ss_dssp S-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTET---TEEEESSTTSSTTEEEEE-TTSSEEEEEEE
T ss_pred eeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCC---CCeEeccCCCCCceEEEECCCCCEEEEEEc
Confidence 66755 67888877665444 22 4555566512 244455544444479999999998876654
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: |
| >PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=98.07 E-value=0.003 Score=68.59 Aligned_cols=238 Identities=12% Similarity=0.134 Sum_probs=142.6
Q ss_pred EEEEcCCCCEEEEEE----------CCCcEEEEeCCCCeEEEEeccCCC-------CeEEEEEcCCCCEEEEEeC--CCe
Q 003236 560 SCHFSPDGKLLATGG----------HDKKAVLWCTESFTVKSTLEEHTQ-------WITDVRFSPSLSRLATSSA--DRT 620 (837)
Q Consensus 560 sl~fSpdg~~Lasgs----------~Dg~I~VWd~~t~~~~~~l~~h~~-------~I~~l~fspdg~~Latgs~--Dg~ 620 (837)
.+.++||++.+++++ +.-.|.+||..+......+.-... ....+.++.|++++++... .-.
T Consensus 40 ~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~~~~~~~~ls~dgk~~~V~N~TPa~S 119 (342)
T PF06433_consen 40 NVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVVPYKNMFALSADGKFLYVQNFTPATS 119 (342)
T ss_dssp EEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS--GGGEEE-TTSSEEEEEEESSSEE
T ss_pred ceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchheecccccceEEccCCcEEEEEccCCCCe
Confidence 467899999888753 345799999999988765532221 2234677888888777654 356
Q ss_pred EEEEEcCCCCceeEEeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECC-CCeeeeEEec-----CCC-eeEEEEecC
Q 003236 621 VRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSIN-NGSCAGVFKC-----QSG-ATQMRFQPR 693 (837)
Q Consensus 621 I~IWDl~~~~~~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~-t~~~i~~~~~-----~~~-i~sl~~sp~ 693 (837)
|.|.|+...+. +..+.- .+ |.-..|.++.-|.+-+.||.+....+. .|+....... ... +..-.+...
T Consensus 120 VtVVDl~~~kv-v~ei~~-PG---C~~iyP~~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~~ 194 (342)
T PF06433_consen 120 VTVVDLAAKKV-VGEIDT-PG---CWLIYPSGNRGFSMLCGDGSLLTVTLDADGKEAQKSTKVFDPDDDPLFEHPAYSRD 194 (342)
T ss_dssp EEEEETTTTEE-EEEEEG-TS---EEEEEEEETTEEEEEETTSCEEEEEETSTSSEEEEEEEESSTTTS-B-S--EEETT
T ss_pred EEEEECCCCce-eeeecC-CC---EEEEEecCCCceEEEecCCceEEEEECCCCCEeEeeccccCCCCcccccccceECC
Confidence 88888887654 333331 11 222223333335566669999988887 4555432211 111 234455666
Q ss_pred CCEEEEEEcCCeEEEEECCCCeEE--EEEcCC----------CCCEEEEEEcCCCCEEEEEe----C-----C--eEEEE
Q 003236 694 LGRILAAAIENYISILDVETQVCR--LKLQGH----------KNQVHSVCWNTSGEYLASVS----D-----E--LVRVW 750 (837)
Q Consensus 694 g~~llags~dg~I~iwDl~s~~~~--~~l~~h----------~~~V~sl~~spdg~~Lasgs----D-----g--~I~Iw 750 (837)
++.++..+.+|.|+-.|+...... ..+..- .+.---+++++....|++.- + + .|-+|
T Consensus 195 ~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~ 274 (342)
T PF06433_consen 195 GGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVY 274 (342)
T ss_dssp TTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEE
T ss_pred CCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEE
Confidence 778888999999999998865432 222211 11222367777655554432 2 2 57778
Q ss_pred EcCCCCCceeEEEeecCCCceEEEEEeCCCC-EEEEEE-cCCeEEEEECCCCcEEEec
Q 003236 751 SIGSGSKGECIHELSCTGNKFHSCVFHPTFP-SLLVIG-CYETLELWNMTENKTLTLS 806 (837)
Q Consensus 751 Dl~s~~~~~~i~~~~~~~~~I~sv~fspdg~-~L~sgs-~dg~I~IwDl~s~~~~~l~ 806 (837)
|+.+. +.+..+.. ...+.++.++.+.+ .|++.+ .++.|.+||..+++.+...
T Consensus 275 D~~t~---krv~Ri~l-~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~ 328 (342)
T PF06433_consen 275 DLKTH---KRVARIPL-EHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVRSI 328 (342)
T ss_dssp ETTTT---EEEEEEEE-EEEESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEEEE
T ss_pred ECCCC---eEEEEEeC-CCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEeeh
Confidence 88877 66666654 34577899998775 555554 4679999999999988443
|
4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). |
| >PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators [] | Back alignment and domain information |
|---|
Probab=98.06 E-value=0.003 Score=66.57 Aligned_cols=200 Identities=13% Similarity=0.182 Sum_probs=115.0
Q ss_pred EEEecCCCCCeEEEEEcCCCC-EEEEEECCCcEEEEeCCCCeEEEEeccC-CCCeEEEEEcCCCCEEEEEeCCCeEEEEE
Q 003236 548 FQLIPASTSKVESCHFSPDGK-LLATGGHDKKAVLWCTESFTVKSTLEEH-TQWITDVRFSPSLSRLATSSADRTVRVWD 625 (837)
Q Consensus 548 ~~~l~~H~~~V~sl~fSpdg~-~Lasgs~Dg~I~VWd~~t~~~~~~l~~h-~~~I~~l~fspdg~~Latgs~Dg~I~IWD 625 (837)
...+.+-...|..++|+|+.+ ++++....+.|..++. +++.+..+.-. .+....|++..++.++++.-.++.+.+++
T Consensus 14 ~~~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~ 92 (248)
T PF06977_consen 14 AKPLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFT 92 (248)
T ss_dssp EEE-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEE
T ss_pred eeECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEE
Confidence 345667677799999999755 6666677788888886 47777776433 35688999988887777666689999999
Q ss_pred cCCCCce--e---EEe-----eccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCC---CeeeeEEe---------cCC
Q 003236 626 TENPDYS--L---RTF-----TGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN---GSCAGVFK---------CQS 683 (837)
Q Consensus 626 l~~~~~~--~---~~~-----~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t---~~~i~~~~---------~~~ 683 (837)
+...... . ..+ ..++..+..++|++.++.++++.- ..-..+|.+.. ...+.... .-.
T Consensus 93 ~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE-~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (248)
T PF06977_consen 93 IDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKE-RKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVR 171 (248)
T ss_dssp E----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEE-SSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS
T ss_pred EeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeC-CCChhhEEEccccCccceeeccccccccccceec
Confidence 8432211 1 111 124466899999999888886654 44455555543 21111111 123
Q ss_pred CeeEEEEecCCCEEEEEEc-CCeEEEEECCCCeEEEEEcCCC---------CCEEEEEEcCCCCEEEEEeCCeEEEE
Q 003236 684 GATQMRFQPRLGRILAAAI-ENYISILDVETQVCRLKLQGHK---------NQVHSVCWNTSGEYLASVSDELVRVW 750 (837)
Q Consensus 684 ~i~sl~~sp~g~~llags~-dg~I~iwDl~s~~~~~~l~~h~---------~~V~sl~~spdg~~LasgsDg~I~Iw 750 (837)
.+..+.++|..+.+++-+. +..|.++| .+++.+..+.-.. .....|+|+++|++.++.--+..++|
T Consensus 172 d~S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIvsEpNlfy~f 247 (248)
T PF06977_consen 172 DLSGLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIVSEPNLFYRF 247 (248)
T ss_dssp ---EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEEETTTEEEEE
T ss_pred cccceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEEEcCCceEEEe
Confidence 5788999998877776665 56888889 5566555443221 25779999999987776655555554
|
Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A. |
| >PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit | Back alignment and domain information |
|---|
Probab=98.01 E-value=0.0025 Score=70.33 Aligned_cols=213 Identities=13% Similarity=0.092 Sum_probs=124.6
Q ss_pred cEEEEeCCCCeEEEEecc-CCCCeEEEE---EcCC----CCEEEEEeC----------CCeEEEEEcCCC-----CceeE
Q 003236 578 KAVLWCTESFTVKSTLEE-HTQWITDVR---FSPS----LSRLATSSA----------DRTVRVWDTENP-----DYSLR 634 (837)
Q Consensus 578 ~I~VWd~~t~~~~~~l~~-h~~~I~~l~---fspd----g~~Latgs~----------Dg~I~IWDl~~~-----~~~~~ 634 (837)
.|+|.|..+.+.+..+.- ....|++++ |..+ ..+|++|+. .|.|.++++... +....
T Consensus 3 ~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i 82 (321)
T PF03178_consen 3 SIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLI 82 (321)
T ss_dssp EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEE
T ss_pred EEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEE
Confidence 578888888777755532 223344443 3332 467777754 289999999984 22222
Q ss_pred EeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCe-eeeEEecCCCeeEEEEecCCCEEEEEEcCCeEEEEECC-
Q 003236 635 TFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS-CAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVE- 712 (837)
Q Consensus 635 ~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~-~i~~~~~~~~i~sl~~sp~g~~llags~dg~I~iwDl~- 712 (837)
......++|++++-. ++.++++. ++.|.+|++...+ ..........+..+.....++++++|.....|.++..+
T Consensus 83 ~~~~~~g~V~ai~~~--~~~lv~~~--g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~~~~I~vgD~~~sv~~~~~~~ 158 (321)
T PF03178_consen 83 HSTEVKGPVTAICSF--NGRLVVAV--GNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVFKNYILVGDAMKSVSLLRYDE 158 (321)
T ss_dssp EEEEESS-EEEEEEE--TTEEEEEE--TTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEETTEEEEEESSSSEEEEEEET
T ss_pred EEEeecCcceEhhhh--CCEEEEee--cCEEEEEEccCcccchhhheecceEEEEEEeccccEEEEEEcccCEEEEEEEc
Confidence 334457889998877 34455444 5789999998877 55555444444444444446799999988888877443
Q ss_pred -CCeEEEEE-cCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCC--------CceeEEEeecCCCceEEE---EEeC
Q 003236 713 -TQVCRLKL-QGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGS--------KGECIHELSCTGNKFHSC---VFHP 778 (837)
Q Consensus 713 -s~~~~~~l-~~h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~--------~~~~i~~~~~~~~~I~sv---~fsp 778 (837)
..+....- ......++++.|-++++.++++. +|.|.++...... ....+..+. .+..|+++ .+.|
T Consensus 159 ~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~~~~~~~~~~~~~L~~~~~f~-lg~~v~~~~~~~l~~ 237 (321)
T PF03178_consen 159 ENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYNPEIPNSRDGDPKLERISSFH-LGDIVNSFRRGSLIP 237 (321)
T ss_dssp TTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-SS-SSTTTTTTBEEEEEEEE--SS-EEEEEE--SS-
T ss_pred cCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEECCCCcccccccccceeEEEEE-CCCccceEEEEEeee
Confidence 32222221 22455788999986666777777 9999999886311 112222332 34556666 4445
Q ss_pred --CCC------EEEEEEcCCeEEEE
Q 003236 779 --TFP------SLLVIGCYETLELW 795 (837)
Q Consensus 779 --dg~------~L~sgs~dg~I~Iw 795 (837)
.+. .++.++.+|.|.+.
T Consensus 238 ~~~~~~~~~~~~i~~~T~~G~Ig~l 262 (321)
T PF03178_consen 238 RSGSSESPNRPQILYGTVDGSIGVL 262 (321)
T ss_dssp -SSSS-TTEEEEEEEEETTS-EEEE
T ss_pred cCCCCcccccceEEEEecCCEEEEE
Confidence 222 48888889987733
|
CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A .... |
| >PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats | Back alignment and domain information |
|---|
Probab=98.01 E-value=0.00079 Score=76.55 Aligned_cols=133 Identities=8% Similarity=0.143 Sum_probs=90.3
Q ss_pred EEEEEcCCCCceeEEeeccccceEEEEEcCCCCeEEEEE----eCCCc----EEEEECCCCee----eeEEecCCCeeEE
Q 003236 621 VRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSC----DNNSE----IRYWSINNGSC----AGVFKCQSGATQM 688 (837)
Q Consensus 621 I~IWDl~~~~~~~~~~~~h~~~V~sl~fspdg~~llasg----s~Dg~----I~vwDl~t~~~----i~~~~~~~~i~sl 688 (837)
+.++.+...+..+..+........++.|+-..++.+.+. +.+|. ..+|++...+. +..+...+.+.|+
T Consensus 186 l~L~~~~~~klEvL~yirTE~dPl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsipL~s~v~~c 265 (545)
T PF11768_consen 186 LHLLSCSGGKLEVLSYIRTENDPLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSIPLPSQVICC 265 (545)
T ss_pred EEEEEecCCcEEEEEEEEecCCcEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEEecCCcceEE
Confidence 333333333333333333344556777776555555443 22332 34566654432 2344557889999
Q ss_pred EEecCCCEEEEEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCC
Q 003236 689 RFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSG 755 (837)
Q Consensus 689 ~~sp~g~~llags~dg~I~iwDl~s~~~~~~l~~h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~ 755 (837)
+++|+...++.|+.||.|.+||...+..... ...-.++.++|+|+|.++++|+ .|.+.+||+.-.
T Consensus 266 a~sp~E~kLvlGC~DgSiiLyD~~~~~t~~~--ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALs 331 (545)
T PF11768_consen 266 ARSPSEDKLVLGCEDGSIILYDTTRGVTLLA--KAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALS 331 (545)
T ss_pred ecCcccceEEEEecCCeEEEEEcCCCeeeee--eecccceEEEEcCCCcEEEEEcCCceEEEEEeecC
Confidence 9999999999999999999999987744332 3455678999999999999999 699999998754
|
|
| >PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals | Back alignment and domain information |
|---|
Probab=97.99 E-value=0.0012 Score=74.54 Aligned_cols=207 Identities=14% Similarity=0.120 Sum_probs=122.3
Q ss_pred eeeEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEe--cc------CCCCeEEEEEcC-----CC-
Q 003236 544 TFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTL--EE------HTQWITDVRFSP-----SL- 609 (837)
Q Consensus 544 ~~~~~~~l~~H~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l--~~------h~~~I~~l~fsp-----dg- 609 (837)
.|.+...+....++|++++.|.=| ++|+|..+|.+.|.|++....+..- .. ....|+++.|.- |+
T Consensus 75 gf~P~~l~~~~~g~vtal~~S~iG-Fvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~y 153 (395)
T PF08596_consen 75 GFLPLTLLDAKQGPVTALKNSDIG-FVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGY 153 (395)
T ss_dssp EEEEEEEE---S-SEEEEEE-BTS-EEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSS
T ss_pred ccCchhheeccCCcEeEEecCCCc-EEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcc
Confidence 477888888889999999998555 9999999999999999888777552 22 345688888863 22
Q ss_pred --CEEEEEeCCCeEEEEEcCC---CCcee---EEeeccccceEEEE-EcCCC--------------------CeEEEEEe
Q 003236 610 --SRLATSSADRTVRVWDTEN---PDYSL---RTFTGHSTTVMSLD-FHPSK--------------------EDLLCSCD 660 (837)
Q Consensus 610 --~~Latgs~Dg~I~IWDl~~---~~~~~---~~~~~h~~~V~sl~-fspdg--------------------~~llasgs 660 (837)
-+|++|...|.+.+|.+.- +...+ .....+.+.|..|. |+.+. ..+++.++
T Consensus 154 SSi~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvS 233 (395)
T PF08596_consen 154 SSICLLVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVS 233 (395)
T ss_dssp EEEEEEEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-
T ss_pred cceEEEEEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEc
Confidence 4688999999999998752 22211 11224556666665 32221 12444444
Q ss_pred CCCcEEEEECCCCeeeeEEecCCCe--eEEEEe-----cCCCEEEEEEcCCeEEEEECCCCeEEEEEcCCC----CCEEE
Q 003236 661 NNSEIRYWSINNGSCAGVFKCQSGA--TQMRFQ-----PRLGRILAAAIENYISILDVETQVCRLKLQGHK----NQVHS 729 (837)
Q Consensus 661 ~Dg~I~vwDl~t~~~i~~~~~~~~i--~sl~~s-----p~g~~llags~dg~I~iwDl~s~~~~~~l~~h~----~~V~s 729 (837)
+..|+++...+.+...... ...+ ..+.+. ..+..|++...+|.|++|.+-.-+.+..+.-.. ..+..
T Consensus 234 -e~~irv~~~~~~k~~~K~~-~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~l~~~~d~~~~~~ 311 (395)
T PF08596_consen 234 -ESDIRVFKPPKSKGAHKSF-DDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVSLPPPLDSRRLSS 311 (395)
T ss_dssp -SSEEEEE-TT---EEEEE--SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEEE-SS---HHHHTT
T ss_pred -ccceEEEeCCCCcccceee-ccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhcccCCCccccccccc
Confidence 6789999998887766555 3322 233442 245668888899999999999988877766432 23445
Q ss_pred EEEcCCCCEEEEEeCCeEEEEEcC
Q 003236 730 VCWNTSGEYLASVSDELVRVWSIG 753 (837)
Q Consensus 730 l~~spdg~~LasgsDg~I~IwDl~ 753 (837)
.+++++|..++-.+...+.++.+-
T Consensus 312 ssis~~Gdi~~~~gpsE~~l~sv~ 335 (395)
T PF08596_consen 312 SSISRNGDIFYWTGPSEIQLFSVW 335 (395)
T ss_dssp -EE-TTS-EEEE-SSSEEEEEEEE
T ss_pred cEECCCCCEEEEeCcccEEEEEEE
Confidence 677888998887776666655543
|
The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A. |
| >KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.98 E-value=3.5e-06 Score=94.99 Aligned_cols=197 Identities=12% Similarity=0.116 Sum_probs=126.8
Q ss_pred CCeEEEEEcCCC--CEEEEEECCCcEEEEeCCCCeE--EEEeccCCCCeEEEEEcC-CCCEEEEEeC----CCeEEEEEc
Q 003236 556 SKVESCHFSPDG--KLLATGGHDKKAVLWCTESFTV--KSTLEEHTQWITDVRFSP-SLSRLATSSA----DRTVRVWDT 626 (837)
Q Consensus 556 ~~V~sl~fSpdg--~~Lasgs~Dg~I~VWd~~t~~~--~~~l~~h~~~I~~l~fsp-dg~~Latgs~----Dg~I~IWDl 626 (837)
..+.|+++..+. .++++|..+|.|.+-....... .....+|...+++++|++ |.+.||.|-. |..+.|||+
T Consensus 57 qy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi 136 (783)
T KOG1008|consen 57 QYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDI 136 (783)
T ss_pred CCceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCccceec
Confidence 347778776543 4789999999999987654222 244567888999999998 5566666632 568999999
Q ss_pred CCCC----ceeEEeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCe-eeeEEecCCCeeEEEEecCCCEEEEEE
Q 003236 627 ENPD----YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS-CAGVFKCQSGATQMRFQPRLGRILAAA 701 (837)
Q Consensus 627 ~~~~----~~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~-~i~~~~~~~~i~sl~~sp~g~~llags 701 (837)
.+.- .......+......+++|..+ ..++.+|.....|.++|++-.. ....+. ...+..+.+.|-....++..
T Consensus 137 ~s~ltvPke~~~fs~~~l~gqns~cwlrd-~klvlaGm~sr~~~ifdlRqs~~~~~svn-Tk~vqG~tVdp~~~nY~cs~ 214 (783)
T KOG1008|consen 137 NSLLTVPKESPLFSSSTLDGQNSVCWLRD-TKLVLAGMTSRSVHIFDLRQSLDSVSSVN-TKYVQGITVDPFSPNYFCSN 214 (783)
T ss_pred ccccCCCccccccccccccCccccccccC-cchhhcccccchhhhhhhhhhhhhhhhhh-hhhcccceecCCCCCceecc
Confidence 8641 111112223455668899865 4577788888899999998322 111111 12455667777434455666
Q ss_pred cCCeEEEEEC-CCCe-EEEEEcCC----CCCEEEEEEcCCCC-EEEEEe--CCeEEEEEcCC
Q 003236 702 IENYISILDV-ETQV-CRLKLQGH----KNQVHSVCWNTSGE-YLASVS--DELVRVWSIGS 754 (837)
Q Consensus 702 ~dg~I~iwDl-~s~~-~~~~l~~h----~~~V~sl~~spdg~-~Lasgs--Dg~I~IwDl~s 754 (837)
.|+.|.+||. ++-+ ++..+... ...+..++|+|... .+++.. .++|++||+..
T Consensus 215 ~dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~~ 276 (783)
T KOG1008|consen 215 SDGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDICV 276 (783)
T ss_pred ccCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEecccc
Confidence 6999999994 3322 22222211 22489999999643 455555 56999999864
|
|
| >PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit | Back alignment and domain information |
|---|
Probab=97.98 E-value=0.0013 Score=72.58 Aligned_cols=208 Identities=13% Similarity=0.103 Sum_probs=119.3
Q ss_pred eEEEEEcCCCCceeEEe-eccccceEEEE---EcCC---CCeEEEEEeC---------C-CcEEEEECCCC-----e--e
Q 003236 620 TVRVWDTENPDYSLRTF-TGHSTTVMSLD---FHPS---KEDLLCSCDN---------N-SEIRYWSINNG-----S--C 675 (837)
Q Consensus 620 ~I~IWDl~~~~~~~~~~-~~h~~~V~sl~---fspd---g~~llasgs~---------D-g~I~vwDl~t~-----~--~ 675 (837)
.|++.|..+.+. +..+ ......+.+++ +..+ ...+++.|.. . |.|.++++... + .
T Consensus 3 ~i~l~d~~~~~~-~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~ 81 (321)
T PF03178_consen 3 SIRLVDPTTFEV-LDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKL 81 (321)
T ss_dssp EEEEEETTTSSE-EEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEE
T ss_pred EEEEEeCCCCeE-EEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEE
Confidence 577777766553 2222 22233444443 3322 1445555532 2 88999999884 2 3
Q ss_pred eeEEecCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCe-EEEEE-cCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEc
Q 003236 676 AGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQV-CRLKL-QGHKNQVHSVCWNTSGEYLASVS-DELVRVWSI 752 (837)
Q Consensus 676 i~~~~~~~~i~sl~~sp~g~~llags~dg~I~iwDl~s~~-~~~~l-~~h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl 752 (837)
+......+.|++++-. +++ ++++..+.|.+|++...+ ....- ......+.++... +++|++|. ...|.++.+
T Consensus 82 i~~~~~~g~V~ai~~~--~~~-lv~~~g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~--~~~I~vgD~~~sv~~~~~ 156 (321)
T PF03178_consen 82 IHSTEVKGPVTAICSF--NGR-LVVAVGNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVF--KNYILVGDAMKSVSLLRY 156 (321)
T ss_dssp EEEEEESS-EEEEEEE--TTE-EEEEETTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEE--TTEEEEEESSSSEEEEEE
T ss_pred EEEEeecCcceEhhhh--CCE-EEEeecCEEEEEEccCcccchhhheecceEEEEEEecc--ccEEEEEEcccCEEEEEE
Confidence 3344557888888877 345 444456899999988776 33322 2233466666665 55888888 666777655
Q ss_pred CCCCCceeEEE--eecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCC-------C--cEE--EeccCCCCeeEE---E
Q 003236 753 GSGSKGECIHE--LSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTE-------N--KTL--TLSAHDKLVSSL---A 816 (837)
Q Consensus 753 ~s~~~~~~i~~--~~~~~~~I~sv~fspdg~~L~sgs~dg~I~IwDl~s-------~--~~~--~l~~h~~~V~sl---a 816 (837)
+... ..+.. .......++++.|-++++.++++..+|.|.++.... + +.. ........|+++ +
T Consensus 157 ~~~~--~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~~~~~~~~~~~~~L~~~~~f~lg~~v~~~~~~~ 234 (321)
T PF03178_consen 157 DEEN--NKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYNPEIPNSRDGDPKLERISSFHLGDIVNSFRRGS 234 (321)
T ss_dssp ETTT--E-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-SS-SSTTTTTTBEEEEEEEE-SS-EEEEEE--
T ss_pred EccC--CEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEECCCCcccccccccceeEEEEECCCccceEEEEE
Confidence 4422 22222 233455688888886667899999999999987752 2 222 223445677777 4
Q ss_pred EeCC--C------CEEEEEECCCcEEE
Q 003236 817 ASTV--N------GMVASASHDKCVKI 835 (837)
Q Consensus 817 ~spd--g------~~LaSgs~DG~I~I 835 (837)
+.|. + ..++.++.+|.|.+
T Consensus 235 l~~~~~~~~~~~~~~i~~~T~~G~Ig~ 261 (321)
T PF03178_consen 235 LIPRSGSSESPNRPQILYGTVDGSIGV 261 (321)
T ss_dssp SS--SSSS-TTEEEEEEEEETTS-EEE
T ss_pred eeecCCCCcccccceEEEEecCCEEEE
Confidence 4441 2 24788889998863
|
CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A .... |
| >TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family | Back alignment and domain information |
|---|
Probab=97.95 E-value=0.018 Score=67.84 Aligned_cols=149 Identities=13% Similarity=0.092 Sum_probs=89.9
Q ss_pred CEEEEEECCCcEEEEeCCCCeEEEEecc--CCC--CeEEEEEcCCCCEEEEEe------CCCeEEEEEcCCCCceeEEee
Q 003236 568 KLLATGGHDKKAVLWCTESFTVKSTLEE--HTQ--WITDVRFSPSLSRLATSS------ADRTVRVWDTENPDYSLRTFT 637 (837)
Q Consensus 568 ~~Lasgs~Dg~I~VWd~~t~~~~~~l~~--h~~--~I~~l~fspdg~~Latgs------~Dg~I~IWDl~~~~~~~~~~~ 637 (837)
..+++++.|+.|...|.++++.+-.... +.. .+++--..-++ .|++++ .+|.|+.+|.++++..-....
T Consensus 121 ~~v~v~t~dg~l~ALDa~TGk~~W~~~~~~~~~~~~~tssP~v~~g-~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~ 199 (527)
T TIGR03075 121 GKVFFGTLDARLVALDAKTGKVVWSKKNGDYKAGYTITAAPLVVKG-KVITGISGGEFGVRGYVTAYDAKTGKLVWRRYT 199 (527)
T ss_pred CEEEEEcCCCEEEEEECCCCCEEeecccccccccccccCCcEEECC-EEEEeecccccCCCcEEEEEECCCCceeEeccC
Confidence 4677788899999999999999866542 111 11111001134 455543 268999999998875332211
Q ss_pred cc------------------------------ccceE-EEEEcCCCCeEEEEEeC----CC-----------cEEEEECC
Q 003236 638 GH------------------------------STTVM-SLDFHPSKEDLLCSCDN----NS-----------EIRYWSIN 671 (837)
Q Consensus 638 ~h------------------------------~~~V~-sl~fspdg~~llasgs~----Dg-----------~I~vwDl~ 671 (837)
.. ...++ .+++.+..+.+++..+. ++ .|.-.|++
T Consensus 200 ~p~~~~~~~~~~~~~~~~~~~~tw~~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~ 279 (527)
T TIGR03075 200 VPGDMGYLDKADKPVGGEPGAKTWPGDAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPD 279 (527)
T ss_pred cCCCcccccccccccccccccCCCCCCccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccc
Confidence 11 01111 34666665544433322 12 68888999
Q ss_pred CCeeeeEEec-CC---------CeeEEEEecCCC---EEEEEEcCCeEEEEECCCCeEE
Q 003236 672 NGSCAGVFKC-QS---------GATQMRFQPRLG---RILAAAIENYISILDVETQVCR 717 (837)
Q Consensus 672 t~~~i~~~~~-~~---------~i~sl~~sp~g~---~llags~dg~I~iwDl~s~~~~ 717 (837)
+|+....+.. +. ...-+.+..+++ .++.+..+|.++++|.++++.+
T Consensus 280 TG~~~W~~Q~~~~D~wD~d~~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i 338 (527)
T TIGR03075 280 TGKIKWHYQTTPHDEWDYDGVNEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKLL 338 (527)
T ss_pred cCCEEEeeeCCCCCCccccCCCCcEEEEeccCCcEEEEEEEeCCCceEEEEECCCCcee
Confidence 9999988874 11 112223334555 5678888999999999999876
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens. |
| >PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase | Back alignment and domain information |
|---|
Probab=97.88 E-value=0.0051 Score=66.01 Aligned_cols=215 Identities=14% Similarity=0.132 Sum_probs=124.6
Q ss_pred CCCCEEEEEeCCCeEEEEEcCCCCceeEEeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeee---------
Q 003236 607 PSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAG--------- 677 (837)
Q Consensus 607 pdg~~Latgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~--------- 677 (837)
..++.|+.|+.+| |+++++........... ...|..+...++-+.+++.+ |+.|+++++..-....
T Consensus 5 ~~~~~L~vGt~~G-l~~~~~~~~~~~~~i~~--~~~I~ql~vl~~~~~llvLs--d~~l~~~~L~~l~~~~~~~~~~~~~ 79 (275)
T PF00780_consen 5 SWGDRLLVGTEDG-LYVYDLSDPSKPTRILK--LSSITQLSVLPELNLLLVLS--DGQLYVYDLDSLEPVSTSAPLAFPK 79 (275)
T ss_pred cCCCEEEEEECCC-EEEEEecCCccceeEee--cceEEEEEEecccCEEEEEc--CCccEEEEchhhccccccccccccc
Confidence 3577899999999 99999943332223222 23399999998877666554 5999999987644333
Q ss_pred ------EEecCCCeeEEE--EecCCCEEEEEEcCCeEEEEECCCC-----eEEEEEcCCCCCEEEEEEcCCCCEEEEEeC
Q 003236 678 ------VFKCQSGATQMR--FQPRLGRILAAAIENYISILDVETQ-----VCRLKLQGHKNQVHSVCWNTSGEYLASVSD 744 (837)
Q Consensus 678 ------~~~~~~~i~sl~--~sp~g~~llags~dg~I~iwDl~s~-----~~~~~l~~h~~~V~sl~~spdg~~LasgsD 744 (837)
.+....++..++ -...+...+++.....|.+|..... +...++. -...+.+++|. +..|+.+..
T Consensus 80 ~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~-lp~~~~~i~~~--~~~i~v~~~ 156 (275)
T PF00780_consen 80 SRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEIS-LPDPPSSIAFL--GNKICVGTS 156 (275)
T ss_pred cccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEE-cCCCcEEEEEe--CCEEEEEeC
Confidence 122223344444 2234555666666778988887653 3445554 45788999998 667877877
Q ss_pred CeEEEEEcCCCCCceeEEEeecC----------CCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE--EeccCCCCe
Q 003236 745 ELVRVWSIGSGSKGECIHELSCT----------GNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL--TLSAHDKLV 812 (837)
Q Consensus 745 g~I~IwDl~s~~~~~~i~~~~~~----------~~~I~sv~fspdg~~L~sgs~dg~I~IwDl~s~~~~--~l~~h~~~V 812 (837)
+...+.|+.++.. ..+...... ..++..+. -+++.+|++. +..-.+.|....... .+.- ...+
T Consensus 157 ~~f~~idl~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~e~Ll~~--~~~g~fv~~~G~~~r~~~i~W-~~~p 231 (275)
T PF00780_consen 157 KGFYLIDLNTGSP-SELLDPSDSSSSFKSRNSSSKPLGIFQ-LSDNEFLLCY--DNIGVFVNKNGEPSRKSTIQW-SSAP 231 (275)
T ss_pred CceEEEecCCCCc-eEEeCccCCcchhhhcccCCCceEEEE-eCCceEEEEe--cceEEEEcCCCCcCcccEEEc-CCch
Confidence 7799999997643 222211111 12222223 3344555442 333334454332211 1211 2355
Q ss_pred eEEEEeCCCCEEEEEECCCcEEEeC
Q 003236 813 SSLAASTVNGMVASASHDKCVKIWK 837 (837)
Q Consensus 813 ~sla~spdg~~LaSgs~DG~I~IWd 837 (837)
.++++. ..||+..+.+ .|.||+
T Consensus 232 ~~~~~~--~pyli~~~~~-~iEV~~ 253 (275)
T PF00780_consen 232 QSVAYS--SPYLIAFSSN-SIEVRS 253 (275)
T ss_pred hEEEEE--CCEEEEECCC-EEEEEE
Confidence 566664 4577776654 488874
|
These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity |
| >PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=97.85 E-value=0.021 Score=65.17 Aligned_cols=191 Identities=12% Similarity=0.080 Sum_probs=101.5
Q ss_pred cEEEEeCCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCC-c----eeEEeeccccceEEEEEcCCC
Q 003236 578 KAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPD-Y----SLRTFTGHSTTVMSLDFHPSK 652 (837)
Q Consensus 578 ~I~VWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~~~-~----~~~~~~~h~~~V~sl~fspdg 652 (837)
.|.||+.. |+.+..+.-..+.|.++.|+.+. .|++...||.+++||+.... . .+....-....+....+..+|
T Consensus 62 ~I~iys~s-G~ll~~i~w~~~~iv~~~wt~~e-~LvvV~~dG~v~vy~~~G~~~fsl~~~i~~~~v~e~~i~~~~~~~~G 139 (410)
T PF04841_consen 62 SIQIYSSS-GKLLSSIPWDSGRIVGMGWTDDE-ELVVVQSDGTVRVYDLFGEFQFSLGEEIEEEKVLECRIFAIWFYKNG 139 (410)
T ss_pred EEEEECCC-CCEeEEEEECCCCEEEEEECCCC-eEEEEEcCCEEEEEeCCCceeechhhhccccCcccccccccccCCCC
Confidence 48999854 55665554444899999999864 56666799999999986322 0 011111111222222333233
Q ss_pred CeEEEEEeCCCcEEEEECCCCe-eeeEE-ecCC---------CeeE-EEEecCCCEEEEEEcCCeEEEEECCCCeEEEEE
Q 003236 653 EDLLCSCDNNSEIRYWSINNGS-CAGVF-KCQS---------GATQ-MRFQPRLGRILAAAIENYISILDVETQVCRLKL 720 (837)
Q Consensus 653 ~~llasgs~Dg~I~vwDl~t~~-~i~~~-~~~~---------~i~s-l~~sp~g~~llags~dg~I~iwDl~s~~~~~~l 720 (837)
+++.. .++.|.+.+-.... ..+.+ .... .... ..++.+....+....++.+.+.+...... +
T Consensus 140 --ivvLt-~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~~g~~i~~i~~~~~~~---i 213 (410)
T PF04841_consen 140 --IVVLT-GNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRVVEILLANGETIYIIDENSFKQ---I 213 (410)
T ss_pred --EEEEC-CCCeEEEEeCccccchhhccccCCCcccccccccccccceEeecCcceEEEEecCCEEEEEEcccccc---c
Confidence 33222 24444444322211 11111 1001 0111 23444444555555556666554332211 1
Q ss_pred cCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecC-CCceEEEEEeCCC
Q 003236 721 QGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCT-GNKFHSCVFHPTF 780 (837)
Q Consensus 721 ~~h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~-~~~I~sv~fspdg 780 (837)
. ..+++..+++||++++||.-. +|.+.|.+..-. +.+.++... ......+.|.-+.
T Consensus 214 ~-~~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~---~~~~e~~~~~~~~p~~~~WCG~d 271 (410)
T PF04841_consen 214 D-SDGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFS---EKLCEFDTDSKSPPKQMAWCGND 271 (410)
T ss_pred c-CCCCeEEEEECCCCCEEEEEECCCCEEEEECccc---ceeEEeecCcCCCCcEEEEECCC
Confidence 1 346899999999999999988 788888876544 344444433 3445566666554
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.82 E-value=6e-06 Score=93.15 Aligned_cols=197 Identities=18% Similarity=0.245 Sum_probs=134.5
Q ss_pred CCeEEEEEcCC--CCEEEEEeCCCeEEEEEcCCCCce-eEEeeccccceEEEEEcCCCCeEEEEEe----CCCcEEEEEC
Q 003236 598 QWITDVRFSPS--LSRLATSSADRTVRVWDTENPDYS-LRTFTGHSTTVMSLDFHPSKEDLLCSCD----NNSEIRYWSI 670 (837)
Q Consensus 598 ~~I~~l~fspd--g~~Latgs~Dg~I~IWDl~~~~~~-~~~~~~h~~~V~sl~fspdg~~llasgs----~Dg~I~vwDl 670 (837)
..+.|+++..+ ...+++|..+|.|.+-.+...... .....++...+++++|++-....|++|- .|..+.|||+
T Consensus 57 qy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi 136 (783)
T KOG1008|consen 57 QYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDI 136 (783)
T ss_pred CCceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCccceec
Confidence 34566666553 346888999999999988765543 4556778899999999987666776663 4668999999
Q ss_pred CCC--eeeeEEe----cCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCe-EEEEEcCCCCCEEEEEEcC-CCCEEEEE
Q 003236 671 NNG--SCAGVFK----CQSGATQMRFQPRLGRILAAAIENYISILDVETQV-CRLKLQGHKNQVHSVCWNT-SGEYLASV 742 (837)
Q Consensus 671 ~t~--~~i~~~~----~~~~i~sl~~sp~g~~llags~dg~I~iwDl~s~~-~~~~l~~h~~~V~sl~~sp-dg~~Lasg 742 (837)
.++ .+..... ...+..+++|..+.+.+++|.....+.++|++... ....+ .+..+..+..+| .+.|+++.
T Consensus 137 ~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~sv--nTk~vqG~tVdp~~~nY~cs~ 214 (783)
T KOG1008|consen 137 NSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVSSV--NTKYVQGITVDPFSPNYFCSN 214 (783)
T ss_pred ccccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhhhhhhhhh--hhhhcccceecCCCCCceecc
Confidence 876 2222111 23456788999888888899999999999998432 11111 234567788888 78888888
Q ss_pred eCCeEEEEE-cCCCCCceeEEEeecC----CCceEEEEEeCCCCE-EEEEEcC-CeEEEEECC
Q 003236 743 SDELVRVWS-IGSGSKGECIHELSCT----GNKFHSCVFHPTFPS-LLVIGCY-ETLELWNMT 798 (837)
Q Consensus 743 sDg~I~IwD-l~s~~~~~~i~~~~~~----~~~I~sv~fspdg~~-L~sgs~d-g~I~IwDl~ 798 (837)
.||.|.+|| .+.-+ ..+..+... ...+..++|.|...- +++...| ++|++||+.
T Consensus 215 ~dg~iAiwD~~rnie--npl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~ 275 (783)
T KOG1008|consen 215 SDGDIAIWDTYRNIE--NPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDIC 275 (783)
T ss_pred ccCceeeccchhhhc--cHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEeccc
Confidence 899999999 43322 122222212 234889999997643 4444444 489999974
|
|
| >PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.013 Score=67.12 Aligned_cols=221 Identities=12% Similarity=0.070 Sum_probs=125.7
Q ss_pred CeEEEEEcCCCCEEEEE-eCC----CeEEEEEcCCCCceeEEeeccccceEEEEEcCCCCeEEEEEeCC----------C
Q 003236 599 WITDVRFSPSLSRLATS-SAD----RTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN----------S 663 (837)
Q Consensus 599 ~I~~l~fspdg~~Latg-s~D----g~I~IWDl~~~~~~~~~~~~h~~~V~sl~fspdg~~llasgs~D----------g 663 (837)
.+..++++|++++||.+ +.. ..|+++|+.+++.....+... ....+.|.+++..++++...+ .
T Consensus 125 ~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~--~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~ 202 (414)
T PF02897_consen 125 SLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENP--KFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPR 202 (414)
T ss_dssp EEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEE--ESEEEEECTTSSEEEEEECSTTTSS-CCGCCE
T ss_pred EeeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCccccc--ccceEEEeCCCCEEEEEEeCcccccccCCCCc
Confidence 34467899999998865 333 369999999976433333321 223499999988888776433 2
Q ss_pred cEEEEECCCCeee--eEEec--CCC-eeEEEEecCCCEEEEEEcC----CeEEEEECCCC-----eEEEEEcCCCCCEEE
Q 003236 664 EIRYWSINNGSCA--GVFKC--QSG-ATQMRFQPRLGRILAAAIE----NYISILDVETQ-----VCRLKLQGHKNQVHS 729 (837)
Q Consensus 664 ~I~vwDl~t~~~i--~~~~~--~~~-i~sl~~sp~g~~llags~d----g~I~iwDl~s~-----~~~~~l~~h~~~V~s 729 (837)
.|++|++.+.... ..+.. ... ...+..+++++++++.... ..|.+.|+..+ ..........+....
T Consensus 203 ~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~~~ 282 (414)
T PF02897_consen 203 QVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDGVEYY 282 (414)
T ss_dssp EEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-EEE
T ss_pred EEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCceEEE
Confidence 4788888776432 34433 223 5678889999998876553 45888898874 333333323333334
Q ss_pred EEEcCCCCEEEEEe----CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcC-C--eEEEEECC-CCc
Q 003236 730 VCWNTSGEYLASVS----DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCY-E--TLELWNMT-ENK 801 (837)
Q Consensus 730 l~~spdg~~Lasgs----Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fspdg~~L~sgs~d-g--~I~IwDl~-s~~ 801 (837)
+... .+.+++.+. .+.|...++...........+..+...+.-..+...+.+|++...+ + .|+++++. +..
T Consensus 283 v~~~-~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~Lvl~~~~~~~~~l~v~~~~~~~~ 361 (414)
T PF02897_consen 283 VDHH-GDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLFKDYLVLSYRENGSSRLRVYDLDDGKE 361 (414)
T ss_dssp EEEE-TTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEETTEEEEEEEETTEEEEEEEETT-TEE
T ss_pred EEcc-CCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEEECCEEEEEEEECCccEEEEEECCCCcE
Confidence 4443 444444443 3477778887765322333444455543333444445566655544 3 79999999 554
Q ss_pred EEEecc-CCCCeeEEEEeCCCC
Q 003236 802 TLTLSA-HDKLVSSLAASTVNG 822 (837)
Q Consensus 802 ~~~l~~-h~~~V~sla~spdg~ 822 (837)
...+.. -.+.|..+...+++.
T Consensus 362 ~~~~~~p~~g~v~~~~~~~~~~ 383 (414)
T PF02897_consen 362 SREIPLPEAGSVSGVSGDFDSD 383 (414)
T ss_dssp EEEEESSSSSEEEEEES-TT-S
T ss_pred EeeecCCcceEEeccCCCCCCC
Confidence 443332 233455555455544
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A .... |
| >COG5276 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.069 Score=56.24 Aligned_cols=270 Identities=10% Similarity=0.040 Sum_probs=151.3
Q ss_pred CCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEecc--CCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCcee
Q 003236 556 SKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEE--HTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSL 633 (837)
Q Consensus 556 ~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~--h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~~~~~~ 633 (837)
+-+..+.++ +++...+..+.-++|+|+.+......+.. -.+.-.++.. .|++..++..|.-+.+.|+.+...+.
T Consensus 87 ~l~~Dv~vs--e~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt~gyaygv~v--sGn~aYVadlddgfLivdvsdpssP~ 162 (370)
T COG5276 87 DLFADVRVS--EEYVYVADWSSGLRIVDISTPDSPTLIGFLNTDGYAYGVYV--SGNYAYVADLDDGFLIVDVSDPSSPQ 162 (370)
T ss_pred hhhheeEec--ccEEEEEcCCCceEEEeccCCCCcceeccccCCceEEEEEe--cCCEEEEeeccCcEEEEECCCCCCce
Confidence 345667776 45777787888899999986544333321 1133334433 58899999877778899998876544
Q ss_pred E--EeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCC---eeeeEEecCCCeeEEEEecCCCEEEEEEcCCeEEE
Q 003236 634 R--TFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNG---SCAGVFKCQSGATQMRFQPRLGRILAAAIENYISI 708 (837)
Q Consensus 634 ~--~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~---~~i~~~~~~~~i~sl~~sp~g~~llags~dg~I~i 708 (837)
. .+.........++.+ |+ ..+.+..|+-+.+.|+... ..+........+.++..+++ +.+....+-.+.+
T Consensus 163 lagrya~~~~d~~~v~IS--Gn-~AYvA~~d~GL~ivDVSnp~sPvli~~~n~g~g~~sv~vsdn--r~y~vvy~egvli 237 (370)
T COG5276 163 LAGRYALPGGDTHDVAIS--GN-YAYVAWRDGGLTIVDVSNPHSPVLIGSYNTGPGTYSVSVSDN--RAYLVVYDEGVLI 237 (370)
T ss_pred eeeeeccCCCCceeEEEe--cC-eEEEEEeCCCeEEEEccCCCCCeEEEEEecCCceEEEEecCC--eeEEEEcccceEE
Confidence 2 233334444667776 33 4445566888999999764 34444455556777777765 4444445556777
Q ss_pred EECCCCeEEEEEcC-CCCCEEEE-EEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEE
Q 003236 709 LDVETQVCRLKLQG-HKNQVHSV-CWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLV 785 (837)
Q Consensus 709 wDl~s~~~~~~l~~-h~~~V~sl-~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fspdg~~L~s 785 (837)
.|....+....+.. ....+.++ .+.-.+++..... +..+-+.|+.+.........+...+.....+... +.++..
T Consensus 238 vd~s~~ssp~~~gsyet~~p~~~s~v~Vs~~~~Yvadga~gl~~idisnp~spfl~ss~~t~g~~a~gi~ay--~~y~yi 315 (370)
T COG5276 238 VDVSGPSSPTVFGSYETSNPVSISTVPVSGEYAYVADGAKGLPIIDISNPPSPFLSSSLDTAGYQAAGIRAY--GNYNYI 315 (370)
T ss_pred EecCCCCCceEeeccccCCcccccceecccceeeeeccccCceeEeccCCCCCchhccccCCCccccceEEe--cCeeEe
Confidence 78776653333321 12222222 2223455555555 6667777776653322222222222222333322 223333
Q ss_pred EEcCCeEEEEECCCCcEE-EeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 003236 786 IGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 837 (837)
Q Consensus 786 gs~dg~I~IwDl~s~~~~-~l~~h~~~V~sla~spdg~~LaSgs~DG~I~IWd 837 (837)
+..+ ...+.|....+.. ...+....+.+.+.+-+.+++.+...++.+.||+
T Consensus 316 adkn-~g~vV~~s~~s~m~~~~g~~ti~~s~~v~~~~q~~y~~d~~~gl~i~~ 367 (370)
T COG5276 316 ADKN-TGAVVDASPPSMMDKRPGRPTIGQSCDVSVDTQIIYSTDYNGGLSIIE 367 (370)
T ss_pred ccCC-ceEEEeCCChhhcccccCcceEeeecceEEEeeEEEEeecCCCEEEEE
Confidence 3333 3444454443333 1222223344555555667888999999999986
|
|
| >COG3386 Gluconolactonase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.0089 Score=65.21 Aligned_cols=219 Identities=11% Similarity=0.049 Sum_probs=132.9
Q ss_pred EEEEcCCCCEE-EEEeCCCeEEEEEcCCCCceeEEeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeeEEe
Q 003236 602 DVRFSPSLSRL-ATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK 680 (837)
Q Consensus 602 ~l~fspdg~~L-atgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~ 680 (837)
...|.++...| .+--..+.|.-|+..+++. ..+. +...+.++.....+. .|+++ +..+.+++.+++..+..+.
T Consensus 29 gP~w~~~~~~L~w~DI~~~~i~r~~~~~g~~--~~~~-~p~~~~~~~~~d~~g-~Lv~~--~~g~~~~~~~~~~~~t~~~ 102 (307)
T COG3386 29 GPVWDPDRGALLWVDILGGRIHRLDPETGKK--RVFP-SPGGFSSGALIDAGG-RLIAC--EHGVRLLDPDTGGKITLLA 102 (307)
T ss_pred CccCcCCCCEEEEEeCCCCeEEEecCCcCce--EEEE-CCCCcccceeecCCC-eEEEE--ccccEEEeccCCceeEEec
Confidence 33466766644 4444577889998886653 3333 223344444443434 44455 3447778876666533332
Q ss_pred c------CCCeeEEEEecCCCEEEEEEc-----------CCeEEEEECCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEe
Q 003236 681 C------QSGATQMRFQPRLGRILAAAI-----------ENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS 743 (837)
Q Consensus 681 ~------~~~i~sl~~sp~g~~llags~-----------dg~I~iwDl~s~~~~~~l~~h~~~V~sl~~spdg~~Lasgs 743 (837)
. ....+.+.+.|+|.+.+..-. -|.|+.+|. .+..+..+..+-..-+.|+||||++.|+.+.
T Consensus 103 ~~~~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~~~l~~~~~~~~NGla~SpDg~tly~aD 181 (307)
T COG3386 103 EPEDGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DGGVVRLLDDDLTIPNGLAFSPDGKTLYVAD 181 (307)
T ss_pred cccCCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcC-CCCEEEeecCcEEecCceEECCCCCEEEEEe
Confidence 1 234567888898776665433 134566665 4566666666666678899999998888776
Q ss_pred --CCeEEEEEcCC--CCCc--eeEEEeecCCCceEEEEEeCCCCEEEEEEcCC-eEEEEECCCCcEE-EeccCCCCeeEE
Q 003236 744 --DELVRVWSIGS--GSKG--ECIHELSCTGNKFHSCVFHPTFPSLLVIGCYE-TLELWNMTENKTL-TLSAHDKLVSSL 815 (837)
Q Consensus 744 --Dg~I~IwDl~s--~~~~--~~i~~~~~~~~~I~sv~fspdg~~L~sgs~dg-~I~IwDl~s~~~~-~l~~h~~~V~sl 815 (837)
.+.|..|++.. +... .....+....+..-.++...+|.+.+++...| .|.+|+.. ++++ .+.-....++++
T Consensus 182 T~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~l~~~i~lP~~~~t~~ 260 (307)
T COG3386 182 TPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GKLLGEIKLPVKRPTNP 260 (307)
T ss_pred CCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-CcEEEEEECCCCCCccc
Confidence 57888888762 2111 11222223456667788888888665555554 99999998 7766 444444778888
Q ss_pred EEeC-CCCEEEEEE
Q 003236 816 AAST-VNGMVASAS 828 (837)
Q Consensus 816 a~sp-dg~~LaSgs 828 (837)
+|-- +.+.|+..+
T Consensus 261 ~FgG~~~~~L~iTs 274 (307)
T COG3386 261 AFGGPDLNTLYITS 274 (307)
T ss_pred eEeCCCcCEEEEEe
Confidence 8864 445444433
|
|
| >KOG3621 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.004 Score=71.95 Aligned_cols=139 Identities=13% Similarity=0.100 Sum_probs=95.1
Q ss_pred cccCCCeEEcccCCCceEEeecCCCCCCCCccccccccCCCeeeeEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEE
Q 003236 502 LTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVL 581 (837)
Q Consensus 502 l~~~~~~v~~Gs~D~~v~~w~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~H~~~V~sl~fSpdg~~Lasgs~Dg~I~V 581 (837)
++..+.+++.|+..+.+.+|....+... .....+-.+.+..++.|++..++|.|+..|.|.|
T Consensus 41 ~dst~~~l~~GsS~G~lyl~~R~~~~~~------------------~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v 102 (726)
T KOG3621|consen 41 VDATEEYLAMGSSAGSVYLYNRHTGEMR------------------KLKNEGATGITCVRSVSSVEYLVAAGTASGRVSV 102 (726)
T ss_pred eecCCceEEEecccceEEEEecCchhhh------------------cccccCccceEEEEEecchhHhhhhhcCCceEEe
Confidence 3456688999999999998866544211 1111123444667788888889999999999999
Q ss_pred EeCCCCeE-----EEEe-ccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCC---CceeEEeeccccceEEEEEcCCC
Q 003236 582 WCTESFTV-----KSTL-EEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENP---DYSLRTFTGHSTTVMSLDFHPSK 652 (837)
Q Consensus 582 Wd~~t~~~-----~~~l-~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~~---~~~~~~~~~h~~~V~sl~fspdg 652 (837)
+-+..... +..+ ..|...|+|++|++++..|++|...|+|.+-.++.. ......+....+.|.-|++..
T Consensus 103 ~ql~~~~p~~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds~IVQlD~~q-- 180 (726)
T KOG3621|consen 103 FQLNKELPRDLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDSRQAFLSKSQEILSEDSEIVQLDYLQ-- 180 (726)
T ss_pred ehhhccCCCcceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEechhhhhccccceeeccCcceEEeeccc--
Confidence 97654211 1111 247889999999999999999999999999888762 112344445567788887763
Q ss_pred CeEEEEEe
Q 003236 653 EDLLCSCD 660 (837)
Q Consensus 653 ~~llasgs 660 (837)
.++|++..
T Consensus 181 ~~LLVStl 188 (726)
T KOG3621|consen 181 SYLLVSTL 188 (726)
T ss_pred ceehHhhh
Confidence 34554443
|
|
| >PRK10115 protease 2; Provisional | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.079 Score=64.56 Aligned_cols=238 Identities=10% Similarity=-0.007 Sum_probs=123.5
Q ss_pred eEEEEEcCCCCEEEEEECC-----CcEEEEeCCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCC------CeEEEEEc
Q 003236 558 VESCHFSPDGKLLATGGHD-----KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSAD------RTVRVWDT 626 (837)
Q Consensus 558 V~sl~fSpdg~~Lasgs~D-----g~I~VWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~D------g~I~IWDl 626 (837)
+..+.|||||++|+.+... ..|++.|+.++..+........ ..++|.+|++.|+....+ ..|+.+++
T Consensus 129 l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~~--~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h~l 206 (686)
T PRK10115 129 LGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNVE--PSFVWANDSWTFYYVRKHPVTLLPYQVWRHTI 206 (686)
T ss_pred EeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccCcc--eEEEEeeCCCEEEEEEecCCCCCCCEEEEEEC
Confidence 6678899999998876432 3688889988764322211211 469999998877665442 36888888
Q ss_pred CCCCc-eeEEeeccccceE-EEEEcCCCCeEEEEEe--CCCcEEEEECC--CCeeeeEEecCCCeeEEEEecCCCEEEEE
Q 003236 627 ENPDY-SLRTFTGHSTTVM-SLDFHPSKEDLLCSCD--NNSEIRYWSIN--NGSCAGVFKCQSGATQMRFQPRLGRILAA 700 (837)
Q Consensus 627 ~~~~~-~~~~~~~h~~~V~-sl~fspdg~~llasgs--~Dg~I~vwDl~--t~~~i~~~~~~~~i~sl~~sp~g~~llag 700 (837)
.++.. ....+........ .+..+.++..+++.+. .++.+.+|+.. .+.....+.....+..-..+. +..++..
T Consensus 207 gt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ly~~ 285 (686)
T PRK10115 207 GTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVFLPRRKDHEYSLDHY-QHRFYLR 285 (686)
T ss_pred CCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceEEEECCCCCEEEEEeC-CCEEEEE
Confidence 87621 2233333223233 3333447776665443 34678888853 343333333333322222232 3445444
Q ss_pred EcC----CeEEEEECCCCeEEEEEcCC-C-CCEEEEEEcCCCCEEEEEe-CCe--EEEEEcCCCCCceeEEEee-cCCCc
Q 003236 701 AIE----NYISILDVETQVCRLKLQGH-K-NQVHSVCWNTSGEYLASVS-DEL--VRVWSIGSGSKGECIHELS-CTGNK 770 (837)
Q Consensus 701 s~d----g~I~iwDl~s~~~~~~l~~h-~-~~V~sl~~spdg~~Lasgs-Dg~--I~IwDl~s~~~~~~i~~~~-~~~~~ 770 (837)
+.. ..|...++........+..+ . ..|..+.+.. +.++++.. ++. |.+++..++ .+..+. .....
T Consensus 286 tn~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~-~~l~~~~~~~g~~~l~~~~~~~~----~~~~l~~~~~~~ 360 (686)
T PRK10115 286 SNRHGKNFGLYRTRVRDEQQWEELIPPRENIMLEGFTLFT-DWLVVEERQRGLTSLRQINRKTR----EVIGIAFDDPAY 360 (686)
T ss_pred EcCCCCCceEEEecCCCcccCeEEECCCCCCEEEEEEEEC-CEEEEEEEeCCEEEEEEEcCCCC----ceEEecCCCCce
Confidence 432 24555555522112233334 3 3678888873 33444444 664 445554322 222222 11222
Q ss_pred eEEEEEe--CCCC-EEEEEEcC---CeEEEEECCCCcEE
Q 003236 771 FHSCVFH--PTFP-SLLVIGCY---ETLELWNMTENKTL 803 (837)
Q Consensus 771 I~sv~fs--pdg~-~L~sgs~d---g~I~IwDl~s~~~~ 803 (837)
+..+.++ +++. .+++.++. +.|+.||+.+++..
T Consensus 361 ~~~~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~~~~~~ 399 (686)
T PRK10115 361 VTWIAYNPEPETSRLRYGYSSMTTPDTLFELDMDTGERR 399 (686)
T ss_pred EeeecccCCCCCceEEEEEecCCCCCEEEEEECCCCcEE
Confidence 3333344 4444 34444332 38899998877643
|
|
| >PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.0048 Score=74.41 Aligned_cols=140 Identities=9% Similarity=0.116 Sum_probs=97.5
Q ss_pred CEEEEE-eCCCeEEEEEcCCCCceeEEeeccccc-eEEEEEcC-----CCCeEEEEEeCCCcEEEEECCCCe--eee---
Q 003236 610 SRLATS-SADRTVRVWDTENPDYSLRTFTGHSTT-VMSLDFHP-----SKEDLLCSCDNNSEIRYWSINNGS--CAG--- 677 (837)
Q Consensus 610 ~~Latg-s~Dg~I~IWDl~~~~~~~~~~~~h~~~-V~sl~fsp-----dg~~llasgs~Dg~I~vwDl~t~~--~i~--- 677 (837)
++|+.. .....|+-.|++.++. +..+..|... |..++-.. .....+ .|-.+..|..||.+-.. ++.
T Consensus 494 ~mil~~~~~~~~ly~mDLe~GKV-V~eW~~~~~~~v~~~~p~~K~aqlt~e~tf-lGls~n~lfriDpR~~~~k~v~~~~ 571 (794)
T PF08553_consen 494 NMILLDPNNPNKLYKMDLERGKV-VEEWKVHDDIPVVDIAPDSKFAQLTNEQTF-LGLSDNSLFRIDPRLSGNKLVDSQS 571 (794)
T ss_pred ceEeecCCCCCceEEEecCCCcE-EEEeecCCCcceeEecccccccccCCCceE-EEECCCceEEeccCCCCCceeeccc
Confidence 344433 3467899999998875 6666666543 55554321 112233 46668889999998632 332
Q ss_pred -EEecCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCeEEEEEc
Q 003236 678 -VFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSI 752 (837)
Q Consensus 678 -~~~~~~~i~sl~~sp~g~~llags~dg~I~iwDl~s~~~~~~l~~h~~~V~sl~~spdg~~LasgsDg~I~IwDl 752 (837)
.+.......|++-+.+ ++|++|+.+|.|++||--.......+.+-..+|.+|+.+.||++|++.++..|.+++.
T Consensus 572 k~Y~~~~~Fs~~aTt~~-G~iavgs~~G~IRLyd~~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc~tyLlLi~t 646 (794)
T PF08553_consen 572 KQYSSKNNFSCFATTED-GYIAVGSNKGDIRLYDRLGKRAKTALPGLGDPIIGIDVTADGKWILATCKTYLLLIDT 646 (794)
T ss_pred cccccCCCceEEEecCC-ceEEEEeCCCcEEeecccchhhhhcCCCCCCCeeEEEecCCCcEEEEeecceEEEEEE
Confidence 2223445667766554 7899999999999999544344445667788999999999999999999999999886
|
Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ]. |
| >PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.013 Score=64.76 Aligned_cols=241 Identities=11% Similarity=0.112 Sum_probs=122.4
Q ss_pred eCCCCeEEEEeccCCCC-----eEEEEEcCCCCEEEEEeC-CC--eEEEEEcCCCCceeEEeeccc-cceEEEEEcCCCC
Q 003236 583 CTESFTVKSTLEEHTQW-----ITDVRFSPSLSRLATSSA-DR--TVRVWDTENPDYSLRTFTGHS-TTVMSLDFHPSKE 653 (837)
Q Consensus 583 d~~t~~~~~~l~~h~~~-----I~~l~fspdg~~Latgs~-Dg--~I~IWDl~~~~~~~~~~~~h~-~~V~sl~fspdg~ 653 (837)
|..+|..+..+..+... .+.=+|.+||+.|+.++. || .+++.|+.+++ +..+.... .......++++++
T Consensus 16 D~~TG~~VtrLT~~~~~~h~~YF~~~~ft~dG~kllF~s~~dg~~nly~lDL~t~~--i~QLTdg~g~~~~g~~~s~~~~ 93 (386)
T PF14583_consen 16 DPDTGHRVTRLTPPDGHSHRLYFYQNCFTDDGRKLLFASDFDGNRNLYLLDLATGE--ITQLTDGPGDNTFGGFLSPDDR 93 (386)
T ss_dssp -TTT--EEEE-S-TTS-EE---TTS--B-TTS-EEEEEE-TTSS-EEEEEETTT-E--EEE---SS-B-TTT-EE-TTSS
T ss_pred CCCCCceEEEecCCCCcccceeecCCCcCCCCCEEEEEeccCCCcceEEEEcccCE--EEECccCCCCCccceEEecCCC
Confidence 66777777777544332 233467778877666554 54 56677777755 44444433 2233566778877
Q ss_pred eEEEEEeCCCcEEEEECCCCeeeeEEecCCCee-EEEEe--cCCCEEEEEEc-----------------------CCeEE
Q 003236 654 DLLCSCDNNSEIRYWSINNGSCAGVFKCQSGAT-QMRFQ--PRLGRILAAAI-----------------------ENYIS 707 (837)
Q Consensus 654 ~llasgs~Dg~I~vwDl~t~~~i~~~~~~~~i~-sl~~s--p~g~~llags~-----------------------dg~I~ 707 (837)
.+++.. .+..|+..|+.+.+....+..+.... ...|. .++.. +++.. ...|.
T Consensus 94 ~~~Yv~-~~~~l~~vdL~T~e~~~vy~~p~~~~g~gt~v~n~d~t~-~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~ 171 (386)
T PF14583_consen 94 ALYYVK-NGRSLRRVDLDTLEERVVYEVPDDWKGYGTWVANSDCTK-LVGIEISREDWKPLTKWKGFREFYEARPHCRIF 171 (386)
T ss_dssp EEEEEE-TTTEEEEEETTT--EEEEEE--TTEEEEEEEEE-TTSSE-EEEEEEEGGG-----SHHHHHHHHHC---EEEE
T ss_pred eEEEEE-CCCeEEEEECCcCcEEEEEECCcccccccceeeCCCccE-EEEEEEeehhccCccccHHHHHHHhhCCCceEE
Confidence 666544 35689999999988777777655544 34553 34444 33332 12477
Q ss_pred EEECCCCeEEEEEcCCCCCEEEEEEcCCC-CEEEEEeCC-----eEEEEEcCCCCC-ceeEEEeecCCCceEEEEEeCCC
Q 003236 708 ILDVETQVCRLKLQGHKNQVHSVCWNTSG-EYLASVSDE-----LVRVWSIGSGSK-GECIHELSCTGNKFHSCVFHPTF 780 (837)
Q Consensus 708 iwDl~s~~~~~~l~~h~~~V~sl~~spdg-~~LasgsDg-----~I~IwDl~s~~~-~~~i~~~~~~~~~I~sv~fspdg 780 (837)
..|+.+++....+. ....+..+.|+|.. .+|+.|.+| .-|||-+++... ...++.. .....+.-=-|.|||
T Consensus 172 ~idl~tG~~~~v~~-~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~-~~~e~~gHEfw~~DG 249 (386)
T PF14583_consen 172 TIDLKTGERKVVFE-DTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRR-MEGESVGHEFWVPDG 249 (386)
T ss_dssp EEETTT--EEEEEE-ESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS----TTEEEEEEEE-TTS
T ss_pred EEECCCCceeEEEe-cCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecC-CCCcccccccccCCC
Confidence 77888887665555 56788899999965 455556644 247887765432 1222211 123334444689999
Q ss_pred CEEEEEEc-----CCeEEEEECCCCcEEEeccCCCCeeEEEEeCCCCEEEEEECC
Q 003236 781 PSLLVIGC-----YETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHD 830 (837)
Q Consensus 781 ~~L~sgs~-----dg~I~IwDl~s~~~~~l~~h~~~V~sla~spdg~~LaSgs~D 830 (837)
..|..-+. +..|.-+|+.+++...+..- .....+-.++||+++|-=+.|
T Consensus 250 ~~i~y~~~~~~~~~~~i~~~d~~t~~~~~~~~~-p~~~H~~ss~Dg~L~vGDG~d 303 (386)
T PF14583_consen 250 STIWYDSYTPGGQDFWIAGYDPDTGERRRLMEM-PWCSHFMSSPDGKLFVGDGGD 303 (386)
T ss_dssp S-EEEEEEETTT--EEEEEE-TTT--EEEEEEE--SEEEEEE-TTSSEEEEEE--
T ss_pred CEEEEEeecCCCCceEEEeeCCCCCCceEEEeC-CceeeeEEcCCCCEEEecCCC
Confidence 88776543 33677888888875533222 245566667888888755544
|
|
| >COG3386 Gluconolactonase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.02 Score=62.51 Aligned_cols=219 Identities=12% Similarity=0.113 Sum_probs=132.8
Q ss_pred EEEcCCCC-EEEEEECCCcEEEEeCCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeEEee--
Q 003236 561 CHFSPDGK-LLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFT-- 637 (837)
Q Consensus 561 l~fSpdg~-~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~~~~~~~~~~-- 637 (837)
-.|.++.. ++.+--..+.|.-|+..+++.. .+. +.+.+.++.....+..|+++.. -+++++.+++.. +..+.
T Consensus 30 P~w~~~~~~L~w~DI~~~~i~r~~~~~g~~~-~~~-~p~~~~~~~~~d~~g~Lv~~~~--g~~~~~~~~~~~-~t~~~~~ 104 (307)
T COG3386 30 PVWDPDRGALLWVDILGGRIHRLDPETGKKR-VFP-SPGGFSSGALIDAGGRLIACEH--GVRLLDPDTGGK-ITLLAEP 104 (307)
T ss_pred ccCcCCCCEEEEEeCCCCeEEEecCCcCceE-EEE-CCCCcccceeecCCCeEEEEcc--ccEEEeccCCce-eEEeccc
Confidence 45667666 4445556788889988765433 222 3344555555555556666543 366777655443 11111
Q ss_pred --c-cccceEEEEEcCCCCeEEEEEe-----C-----CCcEEEEECCCCeeeeEEec-CCCeeEEEEecCCCEEEEEEcC
Q 003236 638 --G-HSTTVMSLDFHPSKEDLLCSCD-----N-----NSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAIE 703 (837)
Q Consensus 638 --~-h~~~V~sl~fspdg~~llasgs-----~-----Dg~I~vwDl~t~~~i~~~~~-~~~i~sl~~sp~g~~llags~d 703 (837)
+ -....+.+...|+|...+-+-+ . -|.|+.+|. .+..++.+.. -...+.++|+|+++.++.+...
T Consensus 105 ~~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~ 183 (307)
T COG3386 105 EDGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DGGVVRLLDDDLTIPNGLAFSPDGKTLYVADTP 183 (307)
T ss_pred cCCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcC-CCCEEEeecCcEEecCceEECCCCCEEEEEeCC
Confidence 1 1245667888999875553333 1 133555554 3555544443 3446789999999988888775
Q ss_pred -CeEEEEECCC--C----e-EEEEEcCCCCCEEEEEEcCCCCEEEEEe-CC-eEEEEEcCCCCCceeEEEeecCCCceEE
Q 003236 704 -NYISILDVET--Q----V-CRLKLQGHKNQVHSVCWNTSGEYLASVS-DE-LVRVWSIGSGSKGECIHELSCTGNKFHS 773 (837)
Q Consensus 704 -g~I~iwDl~s--~----~-~~~~l~~h~~~V~sl~~spdg~~Lasgs-Dg-~I~IwDl~s~~~~~~i~~~~~~~~~I~s 773 (837)
+.|..|++.. + . ....+..+.+..-.++.+.+|.+.+++. +| .|.+|+.. + +.+..+......+++
T Consensus 184 ~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G---~l~~~i~lP~~~~t~ 259 (307)
T COG3386 184 ANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-G---KLLGEIKLPVKRPTN 259 (307)
T ss_pred CCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-C---cEEEEEECCCCCCcc
Confidence 7888888762 1 1 1222333456677888888999886554 44 89999987 5 566666666567777
Q ss_pred EEEe-CCCCEEEEEEcC
Q 003236 774 CVFH-PTFPSLLVIGCY 789 (837)
Q Consensus 774 v~fs-pdg~~L~sgs~d 789 (837)
++|- ++.+.|++.+..
T Consensus 260 ~~FgG~~~~~L~iTs~~ 276 (307)
T COG3386 260 PAFGGPDLNTLYITSAR 276 (307)
T ss_pred ceEeCCCcCEEEEEecC
Confidence 7774 455555555543
|
|
| >PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.033 Score=62.18 Aligned_cols=221 Identities=10% Similarity=0.095 Sum_probs=109.0
Q ss_pred CCCEEEEEE-CCCcEEEEeCC----CCeEEEEecc---CC----CCeEEEEEcCCCCEEEEEeC------CCeEEEEEcC
Q 003236 566 DGKLLATGG-HDKKAVLWCTE----SFTVKSTLEE---HT----QWITDVRFSPSLSRLATSSA------DRTVRVWDTE 627 (837)
Q Consensus 566 dg~~Lasgs-~Dg~I~VWd~~----t~~~~~~l~~---h~----~~I~~l~fspdg~~Latgs~------Dg~I~IWDl~ 627 (837)
+.++|++.+ ..+.|+|+|+. ..+..++++. +. ..-..+.-.|+|..++++-. -|-+.++|-+
T Consensus 86 ~Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~ 165 (461)
T PF05694_consen 86 ERRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMISALGDADGNGPGGFVLLDGE 165 (461)
T ss_dssp -S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EEEEEEEETTS-S--EEEEE-TT
T ss_pred cCCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCccEEEEeccCCCCCCCCcEEEEcCc
Confidence 456777776 77899999987 3455566542 11 12233444578888887532 2467777777
Q ss_pred CCCceeEEeec---cccceEEEEEcCCCCeEEEEEeC--------------------CCcEEEEECCCCeeeeEEecCC-
Q 003236 628 NPDYSLRTFTG---HSTTVMSLDFHPSKEDLLCSCDN--------------------NSEIRYWSINNGSCAGVFKCQS- 683 (837)
Q Consensus 628 ~~~~~~~~~~~---h~~~V~sl~fspdg~~llasgs~--------------------Dg~I~vwDl~t~~~i~~~~~~~- 683 (837)
+-+. ...... ....-+.+-|.|..+ +++|... ..++.+||+.+.+.+.++....
T Consensus 166 tf~v-~g~We~~~~~~~~gYDfw~qpr~n-vMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~ 243 (461)
T PF05694_consen 166 TFEV-KGRWEKDRGPQPFGYDFWYQPRHN-VMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEE 243 (461)
T ss_dssp T--E-EEE--SB-TT------EEEETTTT-EEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TT
T ss_pred cccc-cceeccCCCCCCCCCCeEEcCCCC-EEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCC
Confidence 6442 222222 223456777888755 4445432 3589999999999999999753
Q ss_pred --CeeEEEEec--CCCEEEEEE-cCCeEEEE-ECCCC----eEEEEEcCC-----------------CCCEEEEEEcCCC
Q 003236 684 --GATQMRFQP--RLGRILAAA-IENYISIL-DVETQ----VCRLKLQGH-----------------KNQVHSVCWNTSG 736 (837)
Q Consensus 684 --~i~sl~~sp--~g~~llags-~dg~I~iw-Dl~s~----~~~~~l~~h-----------------~~~V~sl~~spdg 736 (837)
....++|.. +..+-++++ ....|..| ..+.+ +.+..+... ..-|+.|.+|.|.
T Consensus 244 g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDD 323 (461)
T PF05694_consen 244 GQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLDD 323 (461)
T ss_dssp EEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE-TTS
T ss_pred CCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEEEccCC
Confidence 245677754 444444443 34455444 32333 222222211 2457899999999
Q ss_pred CEEEEEe--CCeEEEEEcCCCCCceeEEEeecCC----------------CceEEEEEeCCCCEEEEEEc
Q 003236 737 EYLASVS--DELVRVWSIGSGSKGECIHELSCTG----------------NKFHSCVFHPTFPSLLVIGC 788 (837)
Q Consensus 737 ~~Lasgs--Dg~I~IwDl~s~~~~~~i~~~~~~~----------------~~I~sv~fspdg~~L~sgs~ 788 (837)
++|.++. +|.|+.||+......+.+..+...+ +...-+..|-||+.|++.++
T Consensus 324 rfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqMvqlS~DGkRlYvTnS 393 (461)
T PF05694_consen 324 RFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQMVQLSLDGKRLYVTNS 393 (461)
T ss_dssp -EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S----EEE-TTSSEEEEE--
T ss_pred CEEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCCCeEEEccCCeEEEEEee
Confidence 9999988 9999999999877666655433211 22366789999999888764
|
The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A. |
| >COG3490 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.017 Score=60.41 Aligned_cols=230 Identities=12% Similarity=0.096 Sum_probs=141.7
Q ss_pred EEEEcCCC-CEEEEEECCCc-EEEEeCCCCeEEEEeccCCCC--eEEEEEcCCCCEEEEEeCC-----CeEEEEEcCCCC
Q 003236 560 SCHFSPDG-KLLATGGHDKK-AVLWCTESFTVKSTLEEHTQW--ITDVRFSPSLSRLATSSAD-----RTVRVWDTENPD 630 (837)
Q Consensus 560 sl~fSpdg-~~Lasgs~Dg~-I~VWd~~t~~~~~~l~~h~~~--I~~l~fspdg~~Latgs~D-----g~I~IWDl~~~~ 630 (837)
.|+|+|.- .-++.+-.-|+ ..+||........++...++. --.=+|++||.+|+..-.| |.|-|||.+..-
T Consensus 72 gi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~~rGViGvYd~r~~f 151 (366)
T COG3490 72 GIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDFDPNRGVIGVYDAREGF 151 (366)
T ss_pred CeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCCCCCCCceEEEEeccccc
Confidence 57888854 35666666665 467888877666555322221 1223699999999876543 789999999766
Q ss_pred ceeEEeeccccceEEEEEcCCCCeEEEEEe------C-----------CCcEEEEECCCCeeeeEEecC-----CCeeEE
Q 003236 631 YSLRTFTGHSTTVMSLDFHPSKEDLLCSCD------N-----------NSEIRYWSINNGSCAGVFKCQ-----SGATQM 688 (837)
Q Consensus 631 ~~~~~~~~h~~~V~sl~fspdg~~llasgs------~-----------Dg~I~vwDl~t~~~i~~~~~~-----~~i~sl 688 (837)
..+-.+..|.-....+.|.+||..+++..+ . .-.+.+.|..+|..+...... -.+..+
T Consensus 152 qrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp~~l~~lSiRHl 231 (366)
T COG3490 152 QRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPASLRQLSIRHL 231 (366)
T ss_pred ceecccccCCcCcceeEEecCCcEEEEeCCceecccccCccccchhhcCccEEEEeccccchhhhccCchhhhhcceeee
Confidence 667788888888889999999987776543 0 113444555556555544432 346777
Q ss_pred EEecCCCEEEEEEcCCe-----EEEEECCCCeEEEEEcC-------CCCCEEEEEEcCCCCEEEEEe--CCeEEEEEcCC
Q 003236 689 RFQPRLGRILAAAIENY-----ISILDVETQVCRLKLQG-------HKNQVHSVCWNTSGEYLASVS--DELVRVWSIGS 754 (837)
Q Consensus 689 ~~sp~g~~llags~dg~-----I~iwDl~s~~~~~~l~~-------h~~~V~sl~~spdg~~Lasgs--Dg~I~IwDl~s 754 (837)
+..+++..++.+-..|- -.+=-...++.+.-+.- ....|-+|+.+.+..+++..+ .+...+||..+
T Consensus 232 d~g~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~anYigsiA~n~~~glV~lTSP~GN~~vi~da~t 311 (366)
T COG3490 232 DIGRDGTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFANYIGSIAANRRDGLVALTSPRGNRAVIWDAAT 311 (366)
T ss_pred eeCCCCcEEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHHHHhhhhheeecccCCeEEEecCCCCeEEEEEcCC
Confidence 77777665554443331 11111122333322221 234677888887777777777 55899999999
Q ss_pred CCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEE
Q 003236 755 GSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWN 796 (837)
Q Consensus 755 ~~~~~~i~~~~~~~~~I~sv~fspdg~~L~sgs~dg~I~IwD 796 (837)
+. .+.... -..++-.-+...-+++.+..|.+.++.
T Consensus 312 G~---vv~~a~----l~daaGva~~~~gf~vssg~G~~~~~s 346 (366)
T COG3490 312 GA---VVSEAA----LPDAAGVAAAKGGFAVSSGQGRIIFYS 346 (366)
T ss_pred Cc---EEeccc----ccccccceeccCceEEecCCceEEecc
Confidence 83 332211 111222334444578888888888874
|
|
| >KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.31 Score=58.91 Aligned_cols=166 Identities=10% Similarity=0.044 Sum_probs=106.7
Q ss_pred cEEEEECCCCeeeeEEecC--C---CeeEEEEecC-CCEEEEEEc----------CCeEEEEECCCCeEEEEEcC--CCC
Q 003236 664 EIRYWSINNGSCAGVFKCQ--S---GATQMRFQPR-LGRILAAAI----------ENYISILDVETQVCRLKLQG--HKN 725 (837)
Q Consensus 664 ~I~vwDl~t~~~i~~~~~~--~---~i~sl~~sp~-g~~llags~----------dg~I~iwDl~s~~~~~~l~~--h~~ 725 (837)
.++++|-++.+.+...... . .+.++.|..| +.++++|+. .|.|.+|.......+..... -.+
T Consensus 751 ~l~vlD~nTf~vl~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~~v~G 830 (1096)
T KOG1897|consen 751 FLRVLDQNTFEVLSSHEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVAETVVKG 830 (1096)
T ss_pred EEEEecCCceeEEeeccccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCceeeeeeeeecc
Confidence 4667777776655544432 2 2445557777 566666664 47888888776333332222 234
Q ss_pred CEEEEEEcCCCCEEEEEeCCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEE--EECCCCcEE
Q 003236 726 QVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLEL--WNMTENKTL 803 (837)
Q Consensus 726 ~V~sl~~spdg~~LasgsDg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fspdg~~L~sgs~dg~I~I--wDl~s~~~~ 803 (837)
.+.++..- +|++|| +-...|++|++.+. +.++.-..+...+..+.+.-.++.|++|.--+.+.+ |+...|...
T Consensus 831 av~aL~~f-ngkllA-~In~~vrLye~t~~---~eLr~e~~~~~~~~aL~l~v~gdeI~VgDlm~Sitll~y~~~eg~f~ 905 (1096)
T KOG1897|consen 831 AVYALVEF-NGKLLA-GINQSVRLYEWTTE---RELRIECNISNPIIALDLQVKGDEIAVGDLMRSITLLQYKGDEGNFE 905 (1096)
T ss_pred ceeehhhh-CCeEEE-ecCcEEEEEEcccc---ceehhhhcccCCeEEEEEEecCcEEEEeeccceEEEEEEeccCCceE
Confidence 45544432 455444 44778999999876 556666667788999999999999999999886555 455555455
Q ss_pred --EeccCCCCeeEEEEeCCCCEEEEEECCCcEEE
Q 003236 804 --TLSAHDKLVSSLAASTVNGMVASASHDKCVKI 835 (837)
Q Consensus 804 --~l~~h~~~V~sla~spdg~~LaSgs~DG~I~I 835 (837)
.-..+...++++.+-.+..++ .+..+|.+++
T Consensus 906 evArD~~p~Wmtaveil~~d~yl-gae~~gNlf~ 938 (1096)
T KOG1897|consen 906 EVARDYNPNWMTAVEILDDDTYL-GAENSGNLFT 938 (1096)
T ss_pred EeehhhCccceeeEEEecCceEE-eecccccEEE
Confidence 445677888888886555444 4556676654
|
|
| >PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.036 Score=63.25 Aligned_cols=188 Identities=9% Similarity=0.101 Sum_probs=97.1
Q ss_pred eEEEEEcCCCCceeEEeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeeEEecC-----CCeeEE-E---E
Q 003236 620 TVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ-----SGATQM-R---F 690 (837)
Q Consensus 620 ~I~IWDl~~~~~~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~~-----~~i~sl-~---~ 690 (837)
.|+||+..... +..+.-..+.|.++.|+.+. .++ .-..||.+++||+. |+. .+... ..|... . +
T Consensus 62 ~I~iys~sG~l--l~~i~w~~~~iv~~~wt~~e-~Lv-vV~~dG~v~vy~~~-G~~--~fsl~~~i~~~~v~e~~i~~~~ 134 (410)
T PF04841_consen 62 SIQIYSSSGKL--LSSIPWDSGRIVGMGWTDDE-ELV-VVQSDGTVRVYDLF-GEF--QFSLGEEIEEEKVLECRIFAIW 134 (410)
T ss_pred EEEEECCCCCE--eEEEEECCCCEEEEEECCCC-eEE-EEEcCCEEEEEeCC-Cce--eechhhhccccCcccccccccc
Confidence 36666665432 22222222789999999864 355 44469999999997 333 22221 122211 1 1
Q ss_pred ecCCCEEEEEEcCCeEEEEECCCCe-EEEEE---cCCCC------CEE-EEEEcCCCCEEEEEe-CCeEEEEEcCCCCCc
Q 003236 691 QPRLGRILAAAIENYISILDVETQV-CRLKL---QGHKN------QVH-SVCWNTSGEYLASVS-DELVRVWSIGSGSKG 758 (837)
Q Consensus 691 sp~g~~llags~dg~I~iwDl~s~~-~~~~l---~~h~~------~V~-sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~ 758 (837)
..+.+ +++...++.|.+..--... ....+ ..... .+. -..++.+....+... ++.+.+.+-...
T Consensus 135 ~~~~G-ivvLt~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~~g~~i~~i~~~~~--- 210 (410)
T PF04841_consen 135 FYKNG-IVVLTGNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRVVEILLANGETIYIIDENSF--- 210 (410)
T ss_pred cCCCC-EEEECCCCeEEEEeCccccchhhccccCCCcccccccccccccceEeecCcceEEEEecCCEEEEEEcccc---
Confidence 12123 4444455555555332221 11111 11000 000 022334444444333 445554432221
Q ss_pred eeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEEE-ec-cCCCCeeEEEEeCCCC
Q 003236 759 ECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLT-LS-AHDKLVSSLAASTVNG 822 (837)
Q Consensus 759 ~~i~~~~~~~~~I~sv~fspdg~~L~sgs~dg~I~IwDl~s~~~~~-l~-~h~~~V~sla~spdg~ 822 (837)
..+. ..+++..+++||++++|+.-..+|.+.+.+.+-.+.+. +. .-......+.|.-+..
T Consensus 211 ---~~i~-~~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~~~~~~~p~~~~WCG~da 272 (410)
T PF04841_consen 211 ---KQID-SDGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFDTDSKSPPKQMAWCGNDA 272 (410)
T ss_pred ---cccc-CCCCeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEeecCcCCCCcEEEEECCCc
Confidence 0111 24689999999999999999999999998866555542 22 2235666777775543
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >PRK13616 lipoprotein LpqB; Provisional | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.012 Score=70.06 Aligned_cols=208 Identities=13% Similarity=0.117 Sum_probs=114.4
Q ss_pred CCcEEEEeCCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEe------CCC--eEEEEEcCCCCceeEEeeccccceEEEE
Q 003236 576 DKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSS------ADR--TVRVWDTENPDYSLRTFTGHSTTVMSLD 647 (837)
Q Consensus 576 Dg~I~VWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs------~Dg--~I~IWDl~~~~~~~~~~~~h~~~V~sl~ 647 (837)
+|.+.-.+-.....+.-..+....+.+.+++|+|+.++... .|. .|.+++... .......+ .....-.
T Consensus 328 ~G~l~~~~~~~~~pv~g~~g~~~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg--~~~~lt~g--~~~t~Ps 403 (591)
T PRK13616 328 DGSLVSVDGQGVTPVPGAFGQMGNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGG--VAVQVLEG--HSLTRPS 403 (591)
T ss_pred CCeEEEecCCCeeeCCCccccccCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCC--cceeeecC--CCCCCce
Confidence 55554443222222222223334688999999999887765 244 455555432 22222232 2378889
Q ss_pred EcCCCCeEEEEEe-----------CCCcEEEEECCCCeeeeEEecCCCeeEEEEecCCCEEEEEEcCCeEEE---EECCC
Q 003236 648 FHPSKEDLLCSCD-----------NNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISI---LDVET 713 (837)
Q Consensus 648 fspdg~~llasgs-----------~Dg~I~vwDl~t~~~i~~~~~~~~i~sl~~sp~g~~llags~dg~I~i---wDl~s 713 (837)
|+|+|..+.+... ..+.+.+.++..+.... .....|..+.|+|||.+++... ++.|++ .....
T Consensus 404 WspDG~~lw~v~dg~~~~~v~~~~~~gql~~~~vd~ge~~~--~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~ 480 (591)
T PRK13616 404 WSLDADAVWVVVDGNTVVRVIRDPATGQLARTPVDASAVAS--RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTED 480 (591)
T ss_pred ECCCCCceEEEecCcceEEEeccCCCceEEEEeccCchhhh--ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCC
Confidence 9999775554432 12344444555444433 3356799999999999988876 477777 45444
Q ss_pred CeEE----EEEc-CCCCCEEEEEEcCCCCEEEEEeCC--eEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEE
Q 003236 714 QVCR----LKLQ-GHKNQVHSVCWNTSGEYLASVSDE--LVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVI 786 (837)
Q Consensus 714 ~~~~----~~l~-~h~~~V~sl~~spdg~~LasgsDg--~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fspdg~~L~sg 786 (837)
+... ..+. .-...+.++.|..++.+++...++ .+...++.... .....-......+..++-+++ .|++.
T Consensus 481 G~~~l~~~~~l~~~l~~~~~~l~W~~~~~L~V~~~~~~~~v~~v~vDG~~--~~~~~~~n~~~~v~~vaa~~~--~iyv~ 556 (591)
T PRK13616 481 GQYALTNPREVGPGLGDTAVSLDWRTGDSLVVGRSDPEHPVWYVNLDGSN--SDALPSRNLSAPVVAVAASPS--TVYVT 556 (591)
T ss_pred CceeecccEEeecccCCccccceEecCCEEEEEecCCCCceEEEecCCcc--ccccCCCCccCceEEEecCCc--eEEEE
Confidence 5311 1122 233346889999999976554444 34444444321 111011112445666666653 46666
Q ss_pred EcCCeEEE
Q 003236 787 GCYETLEL 794 (837)
Q Consensus 787 s~dg~I~I 794 (837)
..++.+.+
T Consensus 557 ~~~g~~~l 564 (591)
T PRK13616 557 DARAVLQL 564 (591)
T ss_pred cCCceEEe
Confidence 66664443
|
|
| >KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.00064 Score=77.37 Aligned_cols=95 Identities=16% Similarity=0.167 Sum_probs=79.7
Q ss_pred CCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEeccCCCCeE-EEEEcCCCCEEEEEeCCCeEEEEEcCCCCcee
Q 003236 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWIT-DVRFSPSLSRLATSSADRTVRVWDTENPDYSL 633 (837)
Q Consensus 555 ~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~I~-~l~fspdg~~Latgs~Dg~I~IWDl~~~~~~~ 633 (837)
.-.|.-+.|+|.-.++|++..+|.|.++.+. ...+.++..|...++ +++|.|||+.||+|-.||+|++.|++++....
T Consensus 20 ~~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l~ 98 (665)
T KOG4640|consen 20 PINIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRLV 98 (665)
T ss_pred ccceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCcee
Confidence 3457889999999999999999999999988 778888887887787 99999999999999999999999999877544
Q ss_pred EEeeccccceEEEEEcC
Q 003236 634 RTFTGHSTTVMSLDFHP 650 (837)
Q Consensus 634 ~~~~~h~~~V~sl~fsp 650 (837)
.....-...|.++.|.+
T Consensus 99 ~~~~s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 99 SFLFSVETDISKGIWDR 115 (665)
T ss_pred ccccccccchheeeccc
Confidence 43344456777777763
|
|
| >KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.035 Score=56.54 Aligned_cols=209 Identities=11% Similarity=0.096 Sum_probs=115.0
Q ss_pred CCEEEEEeCCCeEEEEEcCCCCceeEEeeccccceEEEEEcC-CC-CeEEEEEeCCCcEEEEECCC--CeeeeEEe----
Q 003236 609 LSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHP-SK-EDLLCSCDNNSEIRYWSINN--GSCAGVFK---- 680 (837)
Q Consensus 609 g~~Latgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~sl~fsp-dg-~~llasgs~Dg~I~vwDl~t--~~~i~~~~---- 680 (837)
+.++.+--..|.|.-||+..+......+.+.. +.++.+-- ++ ..+.+.++..-.|.-||... .+..+++.
T Consensus 27 ~sLl~VDi~ag~v~r~D~~qn~v~ra~ie~p~--~ag~ilpv~~~~q~~~v~~G~kf~i~nwd~~~~~a~v~~t~~ev~~ 104 (310)
T KOG4499|consen 27 QSLLYVDIEAGEVHRYDIEQNKVYRAKIEGPP--SAGFILPVEGGPQEFAVGCGSKFVIVNWDGVSESAKVYRTLFEVQP 104 (310)
T ss_pred ceEEEEEeccCceehhhhhhhheEEEEEecCc--ceeEEEEecCCCceEEEeecceEEEEEcccccceeeeeeeccccCc
Confidence 34555555667788899887654333444322 22333321 21 23455555555566677432 22222211
Q ss_pred --cCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEcCC--------CCCEEEEEEcCCCCEEEEEe--CCeEE
Q 003236 681 --CQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGH--------KNQVHSVCWNTSGEYLASVS--DELVR 748 (837)
Q Consensus 681 --~~~~i~sl~~sp~g~~llags~dg~I~iwDl~s~~~~~~l~~h--------~~~V~sl~~spdg~~Lasgs--Dg~I~ 748 (837)
.....+.-..+|+|++ +.|.....-.++....+....-+.+| -.--+.++|+.+.+.+.... +-+|.
T Consensus 105 d~kknR~NDgkvdP~Gry-y~GtMad~~~~le~~~g~Ly~~~~~h~v~~i~~~v~IsNgl~Wd~d~K~fY~iDsln~~V~ 183 (310)
T KOG4499|consen 105 DRKKNRLNDGKVDPDGRY-YGGTMADFGDDLEPIGGELYSWLAGHQVELIWNCVGISNGLAWDSDAKKFYYIDSLNYEVD 183 (310)
T ss_pred hHHhcccccCccCCCCce-eeeeeccccccccccccEEEEeccCCCceeeehhccCCccccccccCcEEEEEccCceEEe
Confidence 1344566677899887 44443211112222222222222222 23345789988877666554 66887
Q ss_pred EEE--cCCCCC--ceeEEEeec----CCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE-EeccCCCCeeEEEEeC
Q 003236 749 VWS--IGSGSK--GECIHELSC----TGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAAST 819 (837)
Q Consensus 749 IwD--l~s~~~--~~~i~~~~~----~~~~I~sv~fspdg~~L~sgs~dg~I~IwDl~s~~~~-~l~~h~~~V~sla~sp 819 (837)
-|| +.++.. .+.+..++. ..-..-.+++..+|...+++-..++|..+|..+|+++ .+.-....|+++||--
T Consensus 184 a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklPt~qitsccFgG 263 (310)
T KOG4499|consen 184 AYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIKLPTPQITSCCFGG 263 (310)
T ss_pred eeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECCCCCcEEEEEEcCCCceEEEEecC
Confidence 788 545432 233333332 1112234555667776666667779999999999988 5666688999999974
Q ss_pred C
Q 003236 820 V 820 (837)
Q Consensus 820 d 820 (837)
.
T Consensus 264 k 264 (310)
T KOG4499|consen 264 K 264 (310)
T ss_pred C
Confidence 3
|
|
| >PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2 | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.13 Score=54.39 Aligned_cols=194 Identities=13% Similarity=0.080 Sum_probs=125.3
Q ss_pred eEEEEecc-CCCCeEEEEEcCCCCEEEEEeCCC--eEEEEEcCCCCceeEEeeccccceEEEEEcCCCCeEEEEEeCCCc
Q 003236 588 TVKSTLEE-HTQWITDVRFSPSLSRLATSSADR--TVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSE 664 (837)
Q Consensus 588 ~~~~~l~~-h~~~I~~l~fspdg~~Latgs~Dg--~I~IWDl~~~~~~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~ 664 (837)
+.+.++.. .....-.+.|..++.++-+.+.-| .|+.+|+.+++............-..++... +.++.-.-.++.
T Consensus 34 ~vv~~ypHd~~aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~--d~l~qLTWk~~~ 111 (264)
T PF05096_consen 34 EVVETYPHDPTAFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITILG--DKLYQLTWKEGT 111 (264)
T ss_dssp EEEEEEE--TT-EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEET--TEEEEEESSSSE
T ss_pred EEEEECCCCCcccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEEC--CEEEEEEecCCe
Confidence 34445532 233455788877787777777765 7999999998754443333333444555553 456666677899
Q ss_pred EEEEECCCCeeeeEEecCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEcCC-----CCCEEEEEEcCCCCEE
Q 003236 665 IRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGH-----KNQVHSVCWNTSGEYL 739 (837)
Q Consensus 665 I~vwDl~t~~~i~~~~~~~~i~sl~~sp~g~~llags~dg~I~iwDl~s~~~~~~l~~h-----~~~V~sl~~spdg~~L 739 (837)
..+||..+.+.+..+...+.-..++ .++..|+.......|+++|.++.+....+... -..++.+.|. +|.+.
T Consensus 112 ~f~yd~~tl~~~~~~~y~~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i-~G~Iy 188 (264)
T PF05096_consen 112 GFVYDPNTLKKIGTFPYPGEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI-NGKIY 188 (264)
T ss_dssp EEEEETTTTEEEEEEE-SSS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE-TTEEE
T ss_pred EEEEccccceEEEEEecCCcceEEE--cCCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEE-cCEEE
Confidence 9999999999999998877666666 56788999888999999999887666655432 2245667775 66666
Q ss_pred EEEe-CCeEEEEEcCCCCCceeEEEeec---------------CCCceEEEEEeCCCCEEEEEEcC
Q 003236 740 ASVS-DELVRVWSIGSGSKGECIHELSC---------------TGNKFHSCVFHPTFPSLLVIGCY 789 (837)
Q Consensus 740 asgs-Dg~I~IwDl~s~~~~~~i~~~~~---------------~~~~I~sv~fspdg~~L~sgs~d 789 (837)
|-.- ...|...|..++ .++..+.. .....+.|+++|....|++.+..
T Consensus 189 ANVW~td~I~~Idp~tG---~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTGK~ 251 (264)
T PF05096_consen 189 ANVWQTDRIVRIDPETG---KVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTGKL 251 (264)
T ss_dssp EEETTSSEEEEEETTT----BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEETT
T ss_pred EEeCCCCeEEEEeCCCC---eEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEeCC
Confidence 6555 778888899888 44433211 13457999999998888777653
|
3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X. |
| >PRK10115 protease 2; Provisional | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.25 Score=60.19 Aligned_cols=200 Identities=9% Similarity=0.024 Sum_probs=107.0
Q ss_pred CCeEEEEEcCCCCEEEEEeC-----CCeEEEEEcCCCCceeEEeeccccceEEEEEcCCCCeEEEEEeCC-----CcEEE
Q 003236 598 QWITDVRFSPSLSRLATSSA-----DRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN-----SEIRY 667 (837)
Q Consensus 598 ~~I~~l~fspdg~~Latgs~-----Dg~I~IWDl~~~~~~~~~~~~h~~~V~sl~fspdg~~llasgs~D-----g~I~v 667 (837)
-.+..+.|+||+++|+.+.. ...|++.|+.++......+.+- -..++|.+|++.++++...+ ..|++
T Consensus 127 ~~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~---~~~~~w~~D~~~~~y~~~~~~~~~~~~v~~ 203 (686)
T PRK10115 127 YTLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNV---EPSFVWANDSWTFYYVRKHPVTLLPYQVWR 203 (686)
T ss_pred EEEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccCc---ceEEEEeeCCCEEEEEEecCCCCCCCEEEE
Confidence 34677889999998887643 2368899998765322222221 14699999998888776533 46888
Q ss_pred EECCCC--eeeeEEecCC-Cee-EEEEecCCCEEEEEEc---CCeEEEEECC--CCeEEEEEcCCCCCEEEEEEcCCCCE
Q 003236 668 WSINNG--SCAGVFKCQS-GAT-QMRFQPRLGRILAAAI---ENYISILDVE--TQVCRLKLQGHKNQVHSVCWNTSGEY 738 (837)
Q Consensus 668 wDl~t~--~~i~~~~~~~-~i~-sl~~sp~g~~llags~---dg~I~iwDl~--s~~~~~~l~~h~~~V~sl~~spdg~~ 738 (837)
+++.++ +....+.... ... .+..+.++++++..+. ++.+.+|+.. ++.....+.........+. +..+.+
T Consensus 204 h~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l 282 (686)
T PRK10115 204 HTIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVFLPRRKDHEYSLD-HYQHRF 282 (686)
T ss_pred EECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceEEEECCCCCEEEEE-eCCCEE
Confidence 899887 4444444322 232 2333447777765554 3578888853 3332222222222222222 333333
Q ss_pred EEEEe-CC---eEEEEEcCCCCCceeEEEeecC--CCceEEEEEeCCCCEEEEEEcCC--eEEEEECCCCcEEEe
Q 003236 739 LASVS-DE---LVRVWSIGSGSKGECIHELSCT--GNKFHSCVFHPTFPSLLVIGCYE--TLELWNMTENKTLTL 805 (837)
Q Consensus 739 Lasgs-Dg---~I~IwDl~s~~~~~~i~~~~~~--~~~I~sv~fspdg~~L~sgs~dg--~I~IwDl~s~~~~~l 805 (837)
++... +. .|...++.... . ...+..+ ...+..+.+..+ ..+++...++ .|+++|..++....+
T Consensus 283 y~~tn~~~~~~~l~~~~~~~~~--~-~~~l~~~~~~~~i~~~~~~~~-~l~~~~~~~g~~~l~~~~~~~~~~~~l 353 (686)
T PRK10115 283 YLRSNRHGKNFGLYRTRVRDEQ--Q-WEELIPPRENIMLEGFTLFTD-WLVVEERQRGLTSLRQINRKTREVIGI 353 (686)
T ss_pred EEEEcCCCCCceEEEecCCCcc--c-CeEEECCCCCCEEEEEEEECC-EEEEEEEeCCEEEEEEEcCCCCceEEe
Confidence 33333 22 34444444211 1 1222223 346777777733 3344444455 566667655544443
|
|
| >KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.0084 Score=67.25 Aligned_cols=133 Identities=13% Similarity=0.092 Sum_probs=95.2
Q ss_pred CCEEE-EEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEcCCCC--------EEEEEeCCeEEEEEcCCCCCceeEEEe
Q 003236 694 LGRIL-AAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGE--------YLASVSDELVRVWSIGSGSKGECIHEL 764 (837)
Q Consensus 694 g~~ll-ags~dg~I~iwDl~s~~~~~~l~~h~~~V~sl~~spdg~--------~LasgsDg~I~IwDl~s~~~~~~i~~~ 764 (837)
.+.|+ .+.....|+-.|++.|+.+..+.-|.. |+-+.+.|+.+ .|+.-+|..|.-||.+-.... .+...
T Consensus 345 snlil~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~-kl~~~ 422 (644)
T KOG2395|consen 345 SNLILMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKN-KLAVV 422 (644)
T ss_pred cceEeeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcc-eeeee
Confidence 34444 344457899999999999999987766 77778887654 455556889999998854331 22222
Q ss_pred ec----CCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE--EeccCCCCeeEEEEeCCCCEEEEEECC
Q 003236 765 SC----TGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL--TLSAHDKLVSSLAASTVNGMVASASHD 830 (837)
Q Consensus 765 ~~----~~~~I~sv~fspdg~~L~sgs~dg~I~IwDl~s~~~~--~l~~h~~~V~sla~spdg~~LaSgs~D 830 (837)
.. ....+.|++-..+| +|++|+.+|.|++||- .+... .+.+...+|..|..+.+|++|+..+..
T Consensus 423 q~kqy~~k~nFsc~aTT~sG-~IvvgS~~GdIRLYdr-i~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc~t 492 (644)
T KOG2395|consen 423 QSKQYSTKNNFSCFATTESG-YIVVGSLKGDIRLYDR-IGRRAKTALPGLGDAIKHVDVTADGKWILATCKT 492 (644)
T ss_pred eccccccccccceeeecCCc-eEEEeecCCcEEeehh-hhhhhhhcccccCCceeeEEeeccCcEEEEeccc
Confidence 22 23456666666665 6999999999999997 33322 677888999999999999988766543
|
|
| >PRK13616 lipoprotein LpqB; Provisional | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.039 Score=65.63 Aligned_cols=186 Identities=11% Similarity=0.049 Sum_probs=111.6
Q ss_pred cccceEEEEEcCCCCeEEEEEe-----CC--CcEEEEECCCCeeeeEEecCCCeeEEEEecCCCEEEEEEcC--------
Q 003236 639 HSTTVMSLDFHPSKEDLLCSCD-----NN--SEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIE-------- 703 (837)
Q Consensus 639 h~~~V~sl~fspdg~~llasgs-----~D--g~I~vwDl~t~~~i~~~~~~~~i~sl~~sp~g~~llags~d-------- 703 (837)
....+.+.+++|+|..++++.. .| ..|++++.. +.. ..+........-.|+|+++.+.+....
T Consensus 348 ~~~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~g-g~~-~~lt~g~~~t~PsWspDG~~lw~v~dg~~~~~v~~ 425 (591)
T PRK13616 348 QMGNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLG-GVA-VQVLEGHSLTRPSWSLDADAVWVVVDGNTVVRVIR 425 (591)
T ss_pred cccCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCC-Ccc-eeeecCCCCCCceECCCCCceEEEecCcceEEEec
Confidence 3346789999999998877762 23 356666653 222 333333458889999998877776533
Q ss_pred ----CeEEEEECCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCeEEEE---EcCCCCCceeE---EEeec-CCCceE
Q 003236 704 ----NYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVSDELVRVW---SIGSGSKGECI---HELSC-TGNKFH 772 (837)
Q Consensus 704 ----g~I~iwDl~s~~~~~~l~~h~~~V~sl~~spdg~~LasgsDg~I~Iw---Dl~s~~~~~~i---~~~~~-~~~~I~ 772 (837)
+.+.+.+++.+.... .....|..+.|+|||..|+...++.|+|- ....+. ..+ ..+.. ....+.
T Consensus 426 ~~~~gql~~~~vd~ge~~~---~~~g~Issl~wSpDG~RiA~i~~g~v~Va~Vvr~~~G~--~~l~~~~~l~~~l~~~~~ 500 (591)
T PRK13616 426 DPATGQLARTPVDASAVAS---RVPGPISELQLSRDGVRAAMIIGGKVYLAVVEQTEDGQ--YALTNPREVGPGLGDTAV 500 (591)
T ss_pred cCCCceEEEEeccCchhhh---ccCCCcCeEEECCCCCEEEEEECCEEEEEEEEeCCCCc--eeecccEEeecccCCccc
Confidence 233333444333222 23567999999999999998888888773 323332 111 11222 233468
Q ss_pred EEEEeCCCCEEEEEEcCC--eEEEEECCCCcEEEecc--CCCCeeEEEEeCCCCEEEEEECCCcEE
Q 003236 773 SCVFHPTFPSLLVIGCYE--TLELWNMTENKTLTLSA--HDKLVSSLAASTVNGMVASASHDKCVK 834 (837)
Q Consensus 773 sv~fspdg~~L~sgs~dg--~I~IwDl~s~~~~~l~~--h~~~V~sla~spdg~~LaSgs~DG~I~ 834 (837)
++.|..++.. +++..++ .|+..++.......+.. ....+.+|+-++. .|+.+..+|.+.
T Consensus 501 ~l~W~~~~~L-~V~~~~~~~~v~~v~vDG~~~~~~~~~n~~~~v~~vaa~~~--~iyv~~~~g~~~ 563 (591)
T PRK13616 501 SLDWRTGDSL-VVGRSDPEHPVWYVNLDGSNSDALPSRNLSAPVVAVAASPS--TVYVTDARAVLQ 563 (591)
T ss_pred cceEecCCEE-EEEecCCCCceEEEecCCccccccCCCCccCceEEEecCCc--eEEEEcCCceEE
Confidence 8999999984 4555544 45555555433222222 3567778877763 455556666544
|
|
| >PRK13684 Ycf48-like protein; Provisional | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.55 Score=52.12 Aligned_cols=270 Identities=7% Similarity=-0.011 Sum_probs=132.8
Q ss_pred CCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEe----ccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCC
Q 003236 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTL----EEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPD 630 (837)
Q Consensus 555 ~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l----~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~~~ 630 (837)
...+++|+|..+..-+|+|. ++.|.. ..+.++.-... ......+.++.|.++ ..+++ +..+.| |...++.
T Consensus 45 ~~~l~~v~F~d~~~g~avG~-~G~il~-T~DgG~tW~~~~~~~~~~~~~l~~v~~~~~-~~~~~-G~~g~i--~~S~DgG 118 (334)
T PRK13684 45 EANLLDIAFTDPNHGWLVGS-NRTLLE-TNDGGETWEERSLDLPEENFRLISISFKGD-EGWIV-GQPSLL--LHTTDGG 118 (334)
T ss_pred CCceEEEEEeCCCcEEEEEC-CCEEEE-EcCCCCCceECccCCcccccceeeeEEcCC-cEEEe-CCCceE--EEECCCC
Confidence 55789999986666676664 454322 11222222221 112334778888653 33444 455543 3333322
Q ss_pred ceeEEee---ccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeeEEe--cCCCeeEEEEecCCCEEEEEEcCCe
Q 003236 631 YSLRTFT---GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK--CQSGATQMRFQPRLGRILAAAIENY 705 (837)
Q Consensus 631 ~~~~~~~---~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~--~~~~i~sl~~sp~g~~llags~dg~ 705 (837)
....... ........+..... ..+++.+ ..|.|..= ...|+.-..+. ....+..+.+.+++. +++.+..|.
T Consensus 119 ~tW~~~~~~~~~~~~~~~i~~~~~-~~~~~~g-~~G~i~~S-~DgG~tW~~~~~~~~g~~~~i~~~~~g~-~v~~g~~G~ 194 (334)
T PRK13684 119 KNWTRIPLSEKLPGSPYLITALGP-GTAEMAT-NVGAIYRT-TDGGKNWEALVEDAAGVVRNLRRSPDGK-YVAVSSRGN 194 (334)
T ss_pred CCCeEccCCcCCCCCceEEEEECC-Ccceeee-ccceEEEE-CCCCCCceeCcCCCcceEEEEEECCCCe-EEEEeCCce
Confidence 2122111 01111222222212 2233233 34433221 12222222111 134578888888764 445555565
Q ss_pred EEEE-ECCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCeEEEEEcCCCCCceeEEEe-ecCCCceEEEEEeCCCCEE
Q 003236 706 ISIL-DVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHEL-SCTGNKFHSCVFHPTFPSL 783 (837)
Q Consensus 706 I~iw-Dl~s~~~~~~l~~h~~~V~sl~~spdg~~LasgsDg~I~IwDl~s~~~~~~i~~~-~~~~~~I~sv~fspdg~~L 783 (837)
+..- |-....-......-...++++.+.+++..++++..|.+++=+...+.....+..- ......+..+.+.+++. +
T Consensus 195 i~~s~~~gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg~~G~~~~~s~d~G~sW~~~~~~~~~~~~~l~~v~~~~~~~-~ 273 (334)
T PRK13684 195 FYSTWEPGQTAWTPHQRNSSRRLQSMGFQPDGNLWMLARGGQIRFNDPDDLESWSKPIIPEITNGYGYLDLAYRTPGE-I 273 (334)
T ss_pred EEEEcCCCCCeEEEeeCCCcccceeeeEcCCCCEEEEecCCEEEEccCCCCCccccccCCccccccceeeEEEcCCCC-E
Confidence 5432 2221111111223456789999999999888887886653334444222221111 11234578889998876 5
Q ss_pred EEEEcCCeEEEEECCCCcEEEe----ccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 003236 784 LVIGCYETLELWNMTENKTLTL----SAHDKLVSSLAASTVNGMVASASHDKCVKIWK 837 (837)
Q Consensus 784 ~sgs~dg~I~IwDl~s~~~~~l----~~h~~~V~sla~spdg~~LaSgs~DG~I~IWd 837 (837)
++++.+|.|. .....++.... ..-....+.+.|..+++.+++ +..|.|.-|+
T Consensus 274 ~~~G~~G~v~-~S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~~~-G~~G~il~~~ 329 (334)
T PRK13684 274 WAGGGNGTLL-VSKDGGKTWEKDPVGEEVPSNFYKIVFLDPEKGFVL-GQRGVLLRYV 329 (334)
T ss_pred EEEcCCCeEE-EeCCCCCCCeECCcCCCCCcceEEEEEeCCCceEEE-CCCceEEEec
Confidence 5666677555 34455554322 122235778888776666554 5678877664
|
|
| >PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.022 Score=68.80 Aligned_cols=139 Identities=12% Similarity=0.095 Sum_probs=98.7
Q ss_pred EEEEEeCCCcEEEEECCCCeeeeEEecCCCeeEEEEecC-------CCEEEEEEcCCeEEEEECCCC--eEEEE-E--cC
Q 003236 655 LLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPR-------LGRILAAAIENYISILDVETQ--VCRLK-L--QG 722 (837)
Q Consensus 655 llasgs~Dg~I~vwDl~t~~~i~~~~~~~~i~sl~~sp~-------g~~llags~dg~I~iwDl~s~--~~~~~-l--~~ 722 (837)
+|........|+-.|++.|+.+..+..+..+.-..+.|+ ....++|-.++.+..||.+-. +++.. . ..
T Consensus 496 il~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k~Y~ 575 (794)
T PF08553_consen 496 ILLDPNNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQYS 575 (794)
T ss_pred EeecCCCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeeccccccc
Confidence 333334567899999999999999998776655666664 334688889999999999863 23311 1 12
Q ss_pred CCCCEEEEEEcCCCCEEEEEeCCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEEC
Q 003236 723 HKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNM 797 (837)
Q Consensus 723 h~~~V~sl~~spdg~~LasgsDg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fspdg~~L~sgs~dg~I~IwDl 797 (837)
......|++-+.+|.+.+...+|.||+||-- +. .....+.+.+.+|..+..+.||++|++.+. ..|.|++.
T Consensus 576 ~~~~Fs~~aTt~~G~iavgs~~G~IRLyd~~-g~--~AKT~lp~lG~pI~~iDvt~DGkwilaTc~-tyLlLi~t 646 (794)
T PF08553_consen 576 SKNNFSCFATTEDGYIAVGSNKGDIRLYDRL-GK--RAKTALPGLGDPIIGIDVTADGKWILATCK-TYLLLIDT 646 (794)
T ss_pred cCCCceEEEecCCceEEEEeCCCcEEeeccc-ch--hhhhcCCCCCCCeeEEEecCCCcEEEEeec-ceEEEEEE
Confidence 3456788888777765544449999999943 32 344456677899999999999998776654 46777764
|
Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ]. |
| >PF15390 DUF4613: Domain of unknown function (DUF4613) | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.075 Score=60.87 Aligned_cols=145 Identities=10% Similarity=0.098 Sum_probs=93.5
Q ss_pred CCeEEEEEcCC----CCEEEEEECCCcEEEEeCC-----CCeEEEEecc-C--CC--CeEEEEEcCCCCEEEEEeCCCeE
Q 003236 556 SKVESCHFSPD----GKLLATGGHDKKAVLWCTE-----SFTVKSTLEE-H--TQ--WITDVRFSPSLSRLATSSADRTV 621 (837)
Q Consensus 556 ~~V~sl~fSpd----g~~Lasgs~Dg~I~VWd~~-----t~~~~~~l~~-h--~~--~I~~l~fspdg~~Latgs~Dg~I 621 (837)
..|..++|.|- -..|......+.|.||-+. ..+.+..-.. . .- --..+.|+|....|++-.....-
T Consensus 57 EhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvS 136 (671)
T PF15390_consen 57 EHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVS 136 (671)
T ss_pred ceeeeeeecCcccCCCCceEEEeccceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCcee
Confidence 45889999984 3244555677899999764 2232222111 1 11 12357899998888877766666
Q ss_pred EEEEcCCCCceeEEeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCe-----eeeEEecCCCeeEEEEecCCCE
Q 003236 622 RVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS-----CAGVFKCQSGATQMRFQPRLGR 696 (837)
Q Consensus 622 ~IWDl~~~~~~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~-----~i~~~~~~~~i~sl~~sp~g~~ 696 (837)
.++++......++.-....+.|.|.+|.+||.+++++.+..-.-++||-.... .-..|...+.|.++.-.-+ ..
T Consensus 137 V~~sV~~d~srVkaDi~~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~~qKtL~~CsfcPVFdv~~~Icsi~AT~d-sq 215 (671)
T PF15390_consen 137 VLPSVHCDSSRVKADIKTSGLIHCACWTKDGQRLVVAVGSSLHSYIWDSAQKTLHRCSFCPVFDVGGYICSIEATVD-SQ 215 (671)
T ss_pred EeeeeeeCCceEEEeccCCceEEEEEecCcCCEEEEEeCCeEEEEEecCchhhhhhCCcceeecCCCceEEEEEecc-ce
Confidence 67777765555555556678899999999999999888777778899865432 2234445566666655443 33
Q ss_pred EEEEE
Q 003236 697 ILAAA 701 (837)
Q Consensus 697 llags 701 (837)
+++++
T Consensus 216 VAvaT 220 (671)
T PF15390_consen 216 VAVAT 220 (671)
T ss_pred EEEEe
Confidence 44443
|
|
| >PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.39 Score=52.29 Aligned_cols=270 Identities=9% Similarity=0.059 Sum_probs=123.8
Q ss_pred CCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEe--ccC---CCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCC
Q 003236 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTL--EEH---TQWITDVRFSPSLSRLATSSADRTVRVWDTENP 629 (837)
Q Consensus 555 ~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l--~~h---~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~~ 629 (837)
...+.+|.|..+..-+|+|. .+.| +-..+.++.-... ... .-...+|.|..+ ..++ ++..+. .+...+.+
T Consensus 16 ~~~l~dV~F~d~~~G~~VG~-~g~i-l~T~DGG~tW~~~~~~~~~~~~~~l~~I~f~~~-~g~i-vG~~g~-ll~T~DgG 90 (302)
T PF14870_consen 16 DKPLLDVAFVDPNHGWAVGA-YGTI-LKTTDGGKTWQPVSLDLDNPFDYHLNSISFDGN-EGWI-VGEPGL-LLHTTDGG 90 (302)
T ss_dssp SS-EEEEEESSSS-EEEEET-TTEE-EEESSTTSS-EE-----S-----EEEEEEEETT-EEEE-EEETTE-EEEESSTT
T ss_pred CCceEEEEEecCCEEEEEec-CCEE-EEECCCCccccccccCCCccceeeEEEEEecCC-ceEE-EcCCce-EEEecCCC
Confidence 44799999996666666664 4543 2222323221111 111 223667777643 3444 445553 33333333
Q ss_pred CceeEEee---ccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeeEE--ecCCCeeEEEEecCCCEEEEEEcCC
Q 003236 630 DYSLRTFT---GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVF--KCQSGATQMRFQPRLGRILAAAIEN 704 (837)
Q Consensus 630 ~~~~~~~~---~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~--~~~~~i~sl~~sp~g~~llags~dg 704 (837)
+. -..+. .-......+....++ ..++.+ ..|.|+. ....|+.=..+ .....+..+..++++.+++++....
T Consensus 91 ~t-W~~v~l~~~lpgs~~~i~~l~~~-~~~l~~-~~G~iy~-T~DgG~tW~~~~~~~~gs~~~~~r~~dG~~vavs~~G~ 166 (302)
T PF14870_consen 91 KT-WERVPLSSKLPGSPFGITALGDG-SAELAG-DRGAIYR-TTDGGKTWQAVVSETSGSINDITRSSDGRYVAVSSRGN 166 (302)
T ss_dssp SS--EE----TT-SS-EEEEEEEETT-EEEEEE-TT--EEE-ESSTTSSEEEEE-S----EEEEEE-TTS-EEEEETTSS
T ss_pred CC-cEEeecCCCCCCCeeEEEEcCCC-cEEEEc-CCCcEEE-eCCCCCCeeEcccCCcceeEeEEECCCCcEEEEECccc
Confidence 21 22211 122333344443333 233333 3444332 22223222221 2235677888888988777776666
Q ss_pred eEEEEECCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCeEEEEEcCCCC-C-ceeEEEeecCCCceEEEEEeCCCCE
Q 003236 705 YISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGS-K-GECIHELSCTGNKFHSCVFHPTFPS 782 (837)
Q Consensus 705 ~I~iwDl~s~~~~~~l~~h~~~V~sl~~spdg~~LasgsDg~I~IwDl~s~~-~-~~~i~~~~~~~~~I~sv~fspdg~~ 782 (837)
.+.-||.-...-...-..-...|.++.|.|++.+.+++..|.|++=+..... . .+.+..+......+..++|.++...
T Consensus 167 ~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~~Gg~~~~s~~~~~~~~w~~~~~~~~~~~~~~ld~a~~~~~~~ 246 (302)
T PF14870_consen 167 FYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLARGGQIQFSDDPDDGETWSEPIIPIKTNGYGILDLAYRPPNEI 246 (302)
T ss_dssp EEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEETTTEEEEEE-TTEEEEE---B-TTSS--S-EEEEEESSSS-E
T ss_pred EEEEecCCCccceEEccCccceehhceecCCCCEEEEeCCcEEEEccCCCCccccccccCCcccCceeeEEEEecCCCCE
Confidence 6667886543222222234678999999999998887778888887722110 0 0111112223455899999998764
Q ss_pred EEEEEcCCeEEEEECCCCcEEEec----cCCCCeeEEEEeCCCCEEEEEECCCcEEEe
Q 003236 783 LLVIGCYETLELWNMTENKTLTLS----AHDKLVSSLAASTVNGMVASASHDKCVKIW 836 (837)
Q Consensus 783 L~sgs~dg~I~IwDl~s~~~~~l~----~h~~~V~sla~spdg~~LaSgs~DG~I~IW 836 (837)
.+ ++..|.| +...+.|+.-... .-...+..|.|..+.+-+|. +.||.|--|
T Consensus 247 wa-~gg~G~l-~~S~DgGktW~~~~~~~~~~~n~~~i~f~~~~~gf~l-G~~G~ll~~ 301 (302)
T PF14870_consen 247 WA-VGGSGTL-LVSTDGGKTWQKDRVGENVPSNLYRIVFVNPDKGFVL-GQDGVLLRY 301 (302)
T ss_dssp EE-EESTT-E-EEESSTTSS-EE-GGGTTSSS---EEEEEETTEEEEE--STTEEEEE
T ss_pred EE-EeCCccE-EEeCCCCccceECccccCCCCceEEEEEcCCCceEEE-CCCcEEEEe
Confidence 44 5555544 4456666655322 23456888888766555554 578887655
|
|
| >KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only] | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.027 Score=66.96 Aligned_cols=230 Identities=12% Similarity=0.067 Sum_probs=119.0
Q ss_pred CCCEEEEEECC------CcEEEEeCCCCeEEEEecc-CCCCeEEEEEcCCCCEEEEEeCC------CeEEEEEcCCCCce
Q 003236 566 DGKLLATGGHD------KKAVLWCTESFTVKSTLEE-HTQWITDVRFSPSLSRLATSSAD------RTVRVWDTENPDYS 632 (837)
Q Consensus 566 dg~~Lasgs~D------g~I~VWd~~t~~~~~~l~~-h~~~I~~l~fspdg~~Latgs~D------g~I~IWDl~~~~~~ 632 (837)
.+.++++||.+ ..|..||..+........- +...-.++++. ++...++|+.| .++..||..++.+.
T Consensus 284 ~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~-~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~ 362 (571)
T KOG4441|consen 284 SGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSPRCRVGVAVL-NGKLYVVGGYDSGSDRLSSVERYDPRTNQWT 362 (571)
T ss_pred CCeEEEECCCCCCCcccceeEEecCCcCcEeecCCCCcccccccEEEE-CCEEEEEccccCCCcccceEEEecCCCCcee
Confidence 34566666665 3677888777643322211 22223344444 45788888888 36778888876642
Q ss_pred eEEeeccccceEEEEEcCCCCeEEEEEeCCC-----cEEEEECCCCeeeeEEecCCCeeEEEE-ecCCCEEEEEEcC---
Q 003236 633 LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNS-----EIRYWSINNGSCAGVFKCQSGATQMRF-QPRLGRILAAAIE--- 703 (837)
Q Consensus 633 ~~~~~~h~~~V~sl~fspdg~~llasgs~Dg-----~I~vwDl~t~~~i~~~~~~~~i~sl~~-sp~g~~llags~d--- 703 (837)
. ...-...-..+....-++.+.+.|+.|| +|-.||..+.+-...-........... .-++..+++|+.+
T Consensus 363 ~--~a~M~~~R~~~~v~~l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~~r~~~gv~~~~g~iYi~GG~~~~~ 440 (571)
T KOG4441|consen 363 P--VAPMNTKRSDFGVAVLDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLTRRSGHGVAVLGGKLYIIGGGDGSS 440 (571)
T ss_pred c--cCCccCccccceeEEECCEEEEEeccccccccccEEEecCCCCcccccCCCCcceeeeEEEEECCEEEEEcCcCCCc
Confidence 1 1111111111222222356788888886 477788877654433322222222222 2345556666644
Q ss_pred ---CeEEEEECCCCeEE--EEEcCCCCCEEEEEEcCCCCEEEEEe-CC-----eEEEEEcCCCCCceeEEEeecCCCceE
Q 003236 704 ---NYISILDVETQVCR--LKLQGHKNQVHSVCWNTSGEYLASVS-DE-----LVRVWSIGSGSKGECIHELSCTGNKFH 772 (837)
Q Consensus 704 ---g~I~iwDl~s~~~~--~~l~~h~~~V~sl~~spdg~~Lasgs-Dg-----~I~IwDl~s~~~~~~i~~~~~~~~~I~ 772 (837)
..+..||..+..-. .....-..... ++.. ++.++++|+ |+ +|..||..+..- ..+.........+.
T Consensus 441 ~~l~sve~YDP~t~~W~~~~~M~~~R~~~g-~a~~-~~~iYvvGG~~~~~~~~~VE~ydp~~~~W-~~v~~m~~~rs~~g 517 (571)
T KOG4441|consen 441 NCLNSVECYDPETNTWTLIAPMNTRRSGFG-VAVL-NGKIYVVGGFDGTSALSSVERYDPETNQW-TMVAPMTSPRSAVG 517 (571)
T ss_pred cccceEEEEcCCCCceeecCCcccccccce-EEEE-CCEEEEECCccCCCccceEEEEcCCCCce-eEcccCcccccccc
Confidence 35788888776432 22221111222 3332 456666666 55 478888877521 22211111111111
Q ss_pred EEEEeCCCCEEEEEEcCC-----eEEEEECCCCcEE
Q 003236 773 SCVFHPTFPSLLVIGCYE-----TLELWNMTENKTL 803 (837)
Q Consensus 773 sv~fspdg~~L~sgs~dg-----~I~IwDl~s~~~~ 803 (837)
+..-++...++|+.|+ +|..||..+.+..
T Consensus 518 --~~~~~~~ly~vGG~~~~~~l~~ve~ydp~~d~W~ 551 (571)
T KOG4441|consen 518 --VVVLGGKLYAVGGFDGNNNLNTVECYDPETDTWT 551 (571)
T ss_pred --EEEECCEEEEEecccCccccceeEEcCCCCCcee
Confidence 1223455666777766 7888887777655
|
|
| >PHA02713 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.048 Score=64.84 Aligned_cols=218 Identities=7% Similarity=0.005 Sum_probs=106.5
Q ss_pred cEEEEeCCCCeEEE--EeccCCCCeEEEEEcCCCCEEEEEeCC------CeEEEEEcCCCCcee-EEeeccccceEEEEE
Q 003236 578 KAVLWCTESFTVKS--TLEEHTQWITDVRFSPSLSRLATSSAD------RTVRVWDTENPDYSL-RTFTGHSTTVMSLDF 648 (837)
Q Consensus 578 ~I~VWd~~t~~~~~--~l~~h~~~I~~l~fspdg~~Latgs~D------g~I~IWDl~~~~~~~-~~~~~h~~~V~sl~f 648 (837)
.+..||..+.+... .+...... .+++. -++..++.|+.+ ..+..||..++.... .......... +++.
T Consensus 273 ~v~~yd~~~~~W~~l~~mp~~r~~-~~~a~-l~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~-~~~~ 349 (557)
T PHA02713 273 CILVYNINTMEYSVISTIPNHIIN-YASAI-VDNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRF-SLAV 349 (557)
T ss_pred CEEEEeCCCCeEEECCCCCccccc-eEEEE-ECCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhce-eEEE
Confidence 56778877654332 22111111 12222 256677777753 357788887754311 1111111111 2222
Q ss_pred cCCCCeEEEEEeCCC-----cEEEEECCCCeeeeEEecCCCeeE-EEEecCCCEEEEEEcC-------------------
Q 003236 649 HPSKEDLLCSCDNNS-----EIRYWSINNGSCAGVFKCQSGATQ-MRFQPRLGRILAAAIE------------------- 703 (837)
Q Consensus 649 spdg~~llasgs~Dg-----~I~vwDl~t~~~i~~~~~~~~i~s-l~~sp~g~~llags~d------------------- 703 (837)
. ++.+++.|+.++ .+.+||..+.+-...-........ ....-++..+++|+.+
T Consensus 350 ~--~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp~~r~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~ 427 (557)
T PHA02713 350 I--DDTIYAIGGQNGTNVERTIECYTMGDDKWKMLPDMPIALSSYGMCVLDQYIYIIGGRTEHIDYTSVHHMNSIDMEED 427 (557)
T ss_pred E--CCEEEEECCcCCCCCCceEEEEECCCCeEEECCCCCcccccccEEEECCEEEEEeCCCccccccccccccccccccc
Confidence 2 245767777653 488899887653332221111111 1112345555666543
Q ss_pred ----CeEEEEECCCCeE--EEEEcCCCCCEEEEEEcCCCCEEEEEe-CC------eEEEEEcCCCCCceeEEEeecCCCc
Q 003236 704 ----NYISILDVETQVC--RLKLQGHKNQVHSVCWNTSGEYLASVS-DE------LVRVWSIGSGSKGECIHELSCTGNK 770 (837)
Q Consensus 704 ----g~I~iwDl~s~~~--~~~l~~h~~~V~sl~~spdg~~Lasgs-Dg------~I~IwDl~s~~~~~~i~~~~~~~~~ 770 (837)
..|..||.++.+- +..+...... .+++. -++++.+.|+ ++ .|..||..+......+..+......
T Consensus 428 ~~~~~~ve~YDP~td~W~~v~~m~~~r~~-~~~~~-~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~ 505 (557)
T PHA02713 428 THSSNKVIRYDTVNNIWETLPNFWTGTIR-PGVVS-HKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSA 505 (557)
T ss_pred ccccceEEEECCCCCeEeecCCCCccccc-CcEEE-ECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCccccc
Confidence 2477888876532 2222111111 12222 2456555555 32 4678888762223334333332222
Q ss_pred eEEEEEeCCCCEEEEEEcCC--eEEEEECCCCcEEE
Q 003236 771 FHSCVFHPTFPSLLVIGCYE--TLELWNMTENKTLT 804 (837)
Q Consensus 771 I~sv~fspdg~~L~sgs~dg--~I~IwDl~s~~~~~ 804 (837)
...+++ ++...++||.++ .+..||..+.+...
T Consensus 506 ~~~~~~--~~~iyv~Gg~~~~~~~e~yd~~~~~W~~ 539 (557)
T PHA02713 506 LHTILH--DNTIMMLHCYESYMLQDTFNVYTYEWNH 539 (557)
T ss_pred ceeEEE--CCEEEEEeeecceeehhhcCcccccccc
Confidence 222333 667777888787 78889988887653
|
|
| >PF14727 PHTB1_N: PTHB1 N-terminus | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.92 Score=51.60 Aligned_cols=260 Identities=14% Similarity=0.134 Sum_probs=144.5
Q ss_pred CCEEEEEECCCcEEEEeCCCCe-----EEEEeccCCCCeEEEEEcC-----CCCEEEEEeCCCeEEEEEcCCCC------
Q 003236 567 GKLLATGGHDKKAVLWCTESFT-----VKSTLEEHTQWITDVRFSP-----SLSRLATSSADRTVRVWDTENPD------ 630 (837)
Q Consensus 567 g~~Lasgs~Dg~I~VWd~~t~~-----~~~~l~~h~~~I~~l~fsp-----dg~~Latgs~Dg~I~IWDl~~~~------ 630 (837)
...|++|+.+|.++||+..... .+... .-..+|..|..-. +...||+ -.-..+.||.+....
T Consensus 37 ~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~-~l~~PILqv~~G~F~s~~~~~~LaV-LhP~kl~vY~v~~~~g~~~~g 114 (418)
T PF14727_consen 37 SDKIIVGSYSGILRIYDPSGNEFQPEDLLLET-QLKDPILQVECGKFVSGSEDLQLAV-LHPRKLSVYSVSLVDGTVEHG 114 (418)
T ss_pred ccEEEEeccccEEEEEccCCCCCCCccEEEEE-ecCCcEEEEEeccccCCCCcceEEE-ecCCEEEEEEEEecCCCcccC
Confidence 4589999999999999875432 22222 2456788877643 2234444 467788888874211
Q ss_pred --ceeEEeeccc--cceEEEEEcC----CCCeEEEEEeCCCcEEEEECCCCeeeeEEecCCCeeEEEEecCCCEEEEEEc
Q 003236 631 --YSLRTFTGHS--TTVMSLDFHP----SKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAI 702 (837)
Q Consensus 631 --~~~~~~~~h~--~~V~sl~fsp----dg~~llasgs~Dg~I~vwDl~t~~~i~~~~~~~~i~sl~~sp~g~~llags~ 702 (837)
..+.....|. .....+++-| .+..+++.-+.||.+.+|+-+.......+..---...++|.+....|++++.
T Consensus 115 ~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~~llPgPl~Y~~~tDsfvt~ss 194 (418)
T PF14727_consen 115 NQYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPDFLLPGPLCYCPRTDSFVTASS 194 (418)
T ss_pred cEEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCCCCCCcCeEEeecCCEEEEecC
Confidence 2233333343 2333444433 2357888999999999999876554444443233456788888889999999
Q ss_pred CCeEEEEECCCC--------------------e---EEEEEcCCCCCEEE---EEEcCCCCEEEEEeCCeEEEEEcCCCC
Q 003236 703 ENYISILDVETQ--------------------V---CRLKLQGHKNQVHS---VCWNTSGEYLASVSDELVRVWSIGSGS 756 (837)
Q Consensus 703 dg~I~iwDl~s~--------------------~---~~~~l~~h~~~V~s---l~~spdg~~LasgsDg~I~IwDl~s~~ 756 (837)
+..|..|....- + +-.++. -...+.. +.++.....+++-++..+.+.+-. |
T Consensus 195 s~~l~~Yky~~La~~s~~~~~~~~~~~~~~~~k~l~~dWs~n-lGE~~l~i~v~~~~~~~~~IvvLger~Lf~l~~~-G- 271 (418)
T PF14727_consen 195 SWTLECYKYQDLASASEASSRQSGTEQDISSGKKLNPDWSFN-LGEQALDIQVVRFSSSESDIVVLGERSLFCLKDN-G- 271 (418)
T ss_pred ceeEEEecHHHhhhccccccccccccccccccccccceeEEE-CCceeEEEEEEEcCCCCceEEEEecceEEEEcCC-C-
Confidence 888888854210 0 011111 1122333 333334445555556666666653 2
Q ss_pred CceeEEEeecCCCceEEEEEeC----CC---CEEEEEEcCCeEEEEECCCCcEEEeccCCCCeeEEE---EeCCCCEEEE
Q 003236 757 KGECIHELSCTGNKFHSCVFHP----TF---PSLLVIGCYETLELWNMTENKTLTLSAHDKLVSSLA---ASTVNGMVAS 826 (837)
Q Consensus 757 ~~~~i~~~~~~~~~I~sv~fsp----dg---~~L~sgs~dg~I~IwDl~s~~~~~l~~h~~~V~sla---~spdg~~LaS 826 (837)
.......+.. .+...+.|.. ++ ..+++++.++.+.||.-.+-....... ..+| ++. |..-...|++
T Consensus 272 ~l~~~krLd~--~p~~~~~Y~~~~~~~~~~~~~llV~t~t~~LlVy~d~~L~WsA~l~-~~PV-al~v~~~~~~~G~IV~ 347 (418)
T PF14727_consen 272 SLRFQKRLDY--NPSCFCPYRVPWYNEPSTRLNLLVGTHTGTLLVYEDTTLVWSAQLP-HVPV-ALSVANFNGLKGLIVS 347 (418)
T ss_pred eEEEEEecCC--ceeeEEEEEeecccCCCCceEEEEEecCCeEEEEeCCeEEEecCCC-CCCE-EEEecccCCCCceEEE
Confidence 2233333322 2222222221 22 248899999999999633322221111 1222 333 2233568888
Q ss_pred EECCCcEEE
Q 003236 827 ASHDKCVKI 835 (837)
Q Consensus 827 gs~DG~I~I 835 (837)
-+.||.|.+
T Consensus 348 Ls~~G~L~v 356 (418)
T PF14727_consen 348 LSDEGQLSV 356 (418)
T ss_pred EcCCCcEEE
Confidence 888998865
|
|
| >smart00667 LisH Lissencephaly type-1-like homology motif | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.001 Score=46.92 Aligned_cols=31 Identities=29% Similarity=0.476 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHhcCCC
Q 003236 9 DKMLDVYIYDYLLKRKLHASAKAFQTEGKVS 39 (837)
Q Consensus 9 ~~~l~~yiydyl~k~~~~~~A~~~~~e~~~~ 39 (837)
+..|+..|++||.++|+.++|++|.+|.++.
T Consensus 3 ~~~l~~lI~~yL~~~g~~~ta~~l~~e~~~~ 33 (34)
T smart00667 3 RSELNRLILEYLLRNGYEETAETLQKESGLS 33 (34)
T ss_pred HHHHHHHHHHHHHHcCHHHHHHHHHHHhCCC
Confidence 4578999999999999999999999998765
|
Alpha-helical motif present in Lis1, treacle, Nopp140, some katanin p60 subunits, muskelin, tonneau, LEUNIG and numerous WD40 repeat-containing proteins. It is suggested that LisH motifs contribute to the regulation of microtubule dynamics, either by mediating dimerisation, or else by binding cytoplasmic dynein heavy chain or microtubules directly. |
| >PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.023 Score=51.67 Aligned_cols=101 Identities=21% Similarity=0.231 Sum_probs=67.6
Q ss_pred eEEEEEcC---CC-CEEEEEECCCcEEEEeCCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCcee
Q 003236 558 VESCHFSP---DG-KLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSL 633 (837)
Q Consensus 558 V~sl~fSp---dg-~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~~~~~~ 633 (837)
|+++++.. || ..|++|+.|..|+||+-+ ..+..+.. .+.|++++-... ..++.+..+|+|-+|+-....+
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~--e~~~Ei~e-~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~~~RlW-- 75 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGD--EIVAEITE-TDKVTSLCSLGG-GRFAYALANGTVGVYDRSQRLW-- 75 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCC--cEEEEEec-ccceEEEEEcCC-CEEEEEecCCEEEEEeCcceee--
Confidence 56666654 43 479999999999999854 56666653 456778777665 6799999999999998754322
Q ss_pred EEeeccccceEEEEEc---CCCCeEEEEEeCCCcEE
Q 003236 634 RTFTGHSTTVMSLDFH---PSKEDLLCSCDNNSEIR 666 (837)
Q Consensus 634 ~~~~~h~~~V~sl~fs---pdg~~llasgs~Dg~I~ 666 (837)
..+ ....+.++++. -+|..-|++|-.+|.|-
T Consensus 76 -RiK-SK~~~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 76 -RIK-SKNQVTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred -eec-cCCCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 222 22235555543 34445566777788764
|
|
| >KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only] | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.031 Score=66.39 Aligned_cols=207 Identities=10% Similarity=0.027 Sum_probs=106.5
Q ss_pred eEEEEEcCCCCceeEEeeccccceEEEEEcCCCCeEEEEEeCC------CcEEEEECCCCeeeeEEecCCCeeEEE-Eec
Q 003236 620 TVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN------SEIRYWSINNGSCAGVFKCQSGATQMR-FQP 692 (837)
Q Consensus 620 ~I~IWDl~~~~~~~~~~~~h~~~V~sl~fspdg~~llasgs~D------g~I~vwDl~t~~~i~~~~~~~~i~sl~-~sp 692 (837)
.+..||..++......-........++++.. +.++++|+.| ..+..||..+.+-...-.....-.... ..-
T Consensus 302 ~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~~--~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~~~R~~~~v~~l 379 (571)
T KOG4441|consen 302 SVECYDPKTNEWSSLAPMPSPRCRVGVAVLN--GKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPMNTKRSDFGVAVL 379 (571)
T ss_pred eeEEecCCcCcEeecCCCCcccccccEEEEC--CEEEEEccccCCCcccceEEEecCCCCceeccCCccCccccceeEEE
Confidence 5677777765432222222333344555553 4677788888 367888888776433222212111111 122
Q ss_pred CCCEEEEEEcCC-----eEEEEECCCCeEEEEEcCCCCCEEEEE-EcCCCCEEEEEe-CC------eEEEEEcCCCCCce
Q 003236 693 RLGRILAAAIEN-----YISILDVETQVCRLKLQGHKNQVHSVC-WNTSGEYLASVS-DE------LVRVWSIGSGSKGE 759 (837)
Q Consensus 693 ~g~~llags~dg-----~I~iwDl~s~~~~~~l~~h~~~V~sl~-~spdg~~Lasgs-Dg------~I~IwDl~s~~~~~ 759 (837)
+|...++|+.|| .|..||.++.+-...-. ......+.. ..-+|.+.++|+ ++ .+..||..++. ..
T Consensus 380 ~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~-m~~~r~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~-W~ 457 (571)
T KOG4441|consen 380 DGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAP-MLTRRSGHGVAVLGGKLYIIGGGDGSSNCLNSVECYDPETNT-WT 457 (571)
T ss_pred CCEEEEEeccccccccccEEEecCCCCcccccCC-CCcceeeeEEEEECCEEEEEcCcCCCccccceEEEEcCCCCc-ee
Confidence 456667777775 57888887653221111 111222211 122566666666 43 57888887652 11
Q ss_pred eEEEeecCCCceEEEEEeCCCCEEEEEEcCC-----eEEEEECCCCcEEEeccCCCCeeEEEE-eCCCCEEEEEECCCc
Q 003236 760 CIHELSCTGNKFHSCVFHPTFPSLLVIGCYE-----TLELWNMTENKTLTLSAHDKLVSSLAA-STVNGMVASASHDKC 832 (837)
Q Consensus 760 ~i~~~~~~~~~I~sv~fspdg~~L~sgs~dg-----~I~IwDl~s~~~~~l~~h~~~V~sla~-spdg~~LaSgs~DG~ 832 (837)
.+........... +..-++...++||.|+ +|..||..+.+...+..-......+.. .-++.+.++|+.||.
T Consensus 458 ~~~~M~~~R~~~g--~a~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~~~rs~~g~~~~~~~ly~vGG~~~~ 534 (571)
T KOG4441|consen 458 LIAPMNTRRSGFG--VAVLNGKIYVVGGFDGTSALSSVERYDPETNQWTMVAPMTSPRSAVGVVVLGGKLYAVGGFDGN 534 (571)
T ss_pred ecCCcccccccce--EEEECCEEEEECCccCCCccceEEEEcCCCCceeEcccCccccccccEEEECCEEEEEecccCc
Confidence 2222211111111 2233455666666665 588999998887755433222222211 224677888888864
|
|
| >PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.2 Score=53.37 Aligned_cols=189 Identities=8% Similarity=0.019 Sum_probs=108.0
Q ss_pred ceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeeEEecCCCeeEEEEecCCCEEEEEEcCCeEEEEE-CCCCeE-EEE
Q 003236 642 TVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILD-VETQVC-RLK 719 (837)
Q Consensus 642 ~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~~~~i~sl~~sp~g~~llags~dg~I~iwD-l~s~~~-~~~ 719 (837)
.+.+.++++++..+++....++.-.+|-...+...........+..-.|++++...++...+....++. ...+.. ...
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~~~~~~g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~~~~ 104 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPVRPVLTGGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGEPVE 104 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCcceeeccCCccccccccCCCCEEEEEcCCCceEEEEecCCCcceeEE
Confidence 688999999998777766333333334333333333332445788889999966666666566666663 333322 122
Q ss_pred EcC--CCCCEEEEEEcCCCCEEEEEe----CCeEEEEEcCCCCCc------eeEEEeecCCCceEEEEEeCCCCEEEEEE
Q 003236 720 LQG--HKNQVHSVCWNTSGEYLASVS----DELVRVWSIGSGSKG------ECIHELSCTGNKFHSCVFHPTFPSLLVIG 787 (837)
Q Consensus 720 l~~--h~~~V~sl~~spdg~~Lasgs----Dg~I~IwDl~s~~~~------~~i~~~~~~~~~I~sv~fspdg~~L~sgs 787 (837)
+.. -...|+.+.++|||..++... ++.|.|--+...... ..+.........+..+.|.+++..++.+.
T Consensus 105 v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~~L~V~~~ 184 (253)
T PF10647_consen 105 VDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDSTLVVLGR 184 (253)
T ss_pred ecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCCCEEEEEeC
Confidence 221 112899999999999888766 567777765432221 11222223356789999999998777666
Q ss_pred cCC-eEEE-EECCCCcEEEeccCCCCeeEEEEeCCCCEEEEEECC
Q 003236 788 CYE-TLEL-WNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHD 830 (837)
Q Consensus 788 ~dg-~I~I-wDl~s~~~~~l~~h~~~V~sla~spdg~~LaSgs~D 830 (837)
..+ .+.. +....+....+..-...+..++...+...++..+.+
T Consensus 185 ~~~~~~~~~v~~dG~~~~~l~~~~~~~~v~a~~~~~~~~~~t~~~ 229 (253)
T PF10647_consen 185 SAGGPVVRLVSVDGGPSTPLPSVNLGVPVVAVAASPSTVYVTDDG 229 (253)
T ss_pred CCCCceeEEEEccCCcccccCCCCCCcceEEeeCCCcEEEEECCC
Confidence 554 2333 444444433332333333344444444444444333
|
It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues. |
| >PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea | Back alignment and domain information |
|---|
Probab=96.94 E-value=1 Score=50.67 Aligned_cols=220 Identities=9% Similarity=0.057 Sum_probs=105.8
Q ss_pred CCCEEEEEe-CCCeEEEEEcCCCCc---eeEEeec---cc----cceEEEEEcCCCCeEEEEE--e----CCCcEEEEEC
Q 003236 608 SLSRLATSS-ADRTVRVWDTENPDY---SLRTFTG---HS----TTVMSLDFHPSKEDLLCSC--D----NNSEIRYWSI 670 (837)
Q Consensus 608 dg~~Latgs-~Dg~I~IWDl~~~~~---~~~~~~~---h~----~~V~sl~fspdg~~llasg--s----~Dg~I~vwDl 670 (837)
+.++|+..+ ..+.|+|+|+.+.-. ..+++.. +. .....+..-|+|..++ ++ + .-|.+.++|-
T Consensus 86 ~Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imI-S~lGd~~G~g~Ggf~llD~ 164 (461)
T PF05694_consen 86 ERRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMI-SALGDADGNGPGGFVLLDG 164 (461)
T ss_dssp -S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EEE-EEEEETTS-S--EEEEE-T
T ss_pred cCCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCccEEE-EeccCCCCCCCCcEEEEcC
Confidence 456777766 678999999984321 1222222 11 2223444557766444 43 2 2356888998
Q ss_pred CCCeeeeEEecCCC----eeEEEEecCCCEEEEEEc--------------------CCeEEEEECCCCeEEEEEcCCCC-
Q 003236 671 NNGSCAGVFKCQSG----ATQMRFQPRLGRILAAAI--------------------ENYISILDVETQVCRLKLQGHKN- 725 (837)
Q Consensus 671 ~t~~~i~~~~~~~~----i~sl~~sp~g~~llags~--------------------dg~I~iwDl~s~~~~~~l~~h~~- 725 (837)
++.+.......... -..+-|.|..+.+++... ...+.+||+.+.+.+.++.--..
T Consensus 165 ~tf~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g 244 (461)
T PF05694_consen 165 ETFEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEEG 244 (461)
T ss_dssp TT--EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TTE
T ss_pred ccccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCCC
Confidence 88888777765332 456778888888777643 34799999999999988875332
Q ss_pred -CEEEEEEc--CCCCEEEEEe--CCeEEEEEcCCCCCc--eeEEEeecC-----------------CCceEEEEEeCCCC
Q 003236 726 -QVHSVCWN--TSGEYLASVS--DELVRVWSIGSGSKG--ECIHELSCT-----------------GNKFHSCVFHPTFP 781 (837)
Q Consensus 726 -~V~sl~~s--pdg~~Lasgs--Dg~I~IwDl~s~~~~--~~i~~~~~~-----------------~~~I~sv~fspdg~ 781 (837)
.+..|.|. |+..+=+++. ...|..|--...... +.+..+... ..-|+.|.+|.|.+
T Consensus 245 ~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDr 324 (461)
T PF05694_consen 245 QMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLDDR 324 (461)
T ss_dssp EEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE-TTS-
T ss_pred CceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEEEccCCC
Confidence 34566664 4555544444 555555544222211 122222111 24479999999999
Q ss_pred EEEEEEc-CCeEEEEECCCCcE---E-E-ecc---------------CCCCeeEEEEeCCCCEEEEEE
Q 003236 782 SLLVIGC-YETLELWNMTENKT---L-T-LSA---------------HDKLVSSLAASTVNGMVASAS 828 (837)
Q Consensus 782 ~L~sgs~-dg~I~IwDl~s~~~---~-~-l~~---------------h~~~V~sla~spdg~~LaSgs 828 (837)
+|++++. .|.|+.||+.+-.. + . ..+ -.+...-|..|-||+.|+..+
T Consensus 325 fLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqMvqlS~DGkRlYvTn 392 (461)
T PF05694_consen 325 FLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQMVQLSLDGKRLYVTN 392 (461)
T ss_dssp EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S----EEE-TTSSEEEEE-
T ss_pred EEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCCCeEEEccCCeEEEEEe
Confidence 9998886 67999999977432 2 1 111 112346678889998777654
|
The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A. |
| >smart00320 WD40 WD40 repeats | Back alignment and domain information |
|---|
Probab=96.94 E-value=0.0021 Score=44.58 Aligned_cols=37 Identities=38% Similarity=0.592 Sum_probs=33.3
Q ss_pred EEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEe
Q 003236 547 EFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWC 583 (837)
Q Consensus 547 ~~~~l~~H~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd 583 (837)
.+..+..|...|.++.|++++.++++++.|+.|++|+
T Consensus 4 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 4 LLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 4566778999999999999999999999999999996
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. |
| >COG3204 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.14 Score=54.26 Aligned_cols=164 Identities=12% Similarity=0.192 Sum_probs=102.7
Q ss_pred eeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeeEEecC--CCeeEEEEecCCCEEEEEEcCCeEEEEECCC
Q 003236 636 FTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ--SGATQMRFQPRLGRILAAAIENYISILDVET 713 (837)
Q Consensus 636 ~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~~--~~i~sl~~sp~g~~llags~dg~I~iwDl~s 713 (837)
+.+-...|.++.|+|+.+.++++... ..-.||=...|..++++... .....+.+..++.++++--.+..++++.+..
T Consensus 81 i~g~~~nvS~LTynp~~rtLFav~n~-p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~ 159 (316)
T COG3204 81 ILGETANVSSLTYNPDTRTLFAVTNK-PAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDA 159 (316)
T ss_pred cccccccccceeeCCCcceEEEecCC-CceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcC
Confidence 34455669999999998888866654 44445555568888888753 3456788887777666666788888887765
Q ss_pred CeEEEE-------Ec--CC-CCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecC-------CCceEEEE
Q 003236 714 QVCRLK-------LQ--GH-KNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCT-------GNKFHSCV 775 (837)
Q Consensus 714 ~~~~~~-------l~--~h-~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~-------~~~I~sv~ 775 (837)
...+.. +. .+ ......++|+|....|+.+. .+-+.||.+......-.++....+ -..+.++.
T Consensus 160 ~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~ 239 (316)
T COG3204 160 DTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLE 239 (316)
T ss_pred CccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeeccccce
Confidence 422211 11 12 55678999999998888888 445555555433211112111111 23467778
Q ss_pred EeCCCCEEEEEEc-CCeEEEEECCCC
Q 003236 776 FHPTFPSLLVIGC-YETLELWNMTEN 800 (837)
Q Consensus 776 fspdg~~L~sgs~-dg~I~IwDl~s~ 800 (837)
|++....+++-+. ++.|.-.|....
T Consensus 240 ~~~~~~~LLVLS~ESr~l~Evd~~G~ 265 (316)
T COG3204 240 FNAITNSLLVLSDESRRLLEVDLSGE 265 (316)
T ss_pred ecCCCCcEEEEecCCceEEEEecCCC
Confidence 8876655555554 456666776554
|
|
| >PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases | Back alignment and domain information |
|---|
Probab=96.86 E-value=0.9 Score=50.36 Aligned_cols=232 Identities=14% Similarity=0.158 Sum_probs=119.0
Q ss_pred eEEEEEcCCCCEEEEEECCCcEEEEeCCCCeE---EEEe----ccCCCCeEEEEEcCC---CCEEEEEeCC---------
Q 003236 558 VESCHFSPDGKLLATGGHDKKAVLWCTESFTV---KSTL----EEHTQWITDVRFSPS---LSRLATSSAD--------- 618 (837)
Q Consensus 558 V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~---~~~l----~~h~~~I~~l~fspd---g~~Latgs~D--------- 618 (837)
-+.|+|.|||++|++ ...|.|++++ ..+.. +..+ .........++|+|+ ..+|++....
T Consensus 4 P~~~a~~pdG~l~v~-e~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~~ 81 (331)
T PF07995_consen 4 PRSMAFLPDGRLLVA-ERSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDND 81 (331)
T ss_dssp EEEEEEETTSCEEEE-ETTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSEE
T ss_pred ceEEEEeCCCcEEEE-eCCceEEEEe-CCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCcc
Confidence 578999999987765 5699999999 44443 2222 234457899999994 3344443331
Q ss_pred CeEEEEEcCCCC-------ceeEEeec---cccceEEEEEcCCCCeEEEEEeCC------------CcEEEEECCCCee-
Q 003236 619 RTVRVWDTENPD-------YSLRTFTG---HSTTVMSLDFHPSKEDLLCSCDNN------------SEIRYWSINNGSC- 675 (837)
Q Consensus 619 g~I~IWDl~~~~-------~~~~~~~~---h~~~V~sl~fspdg~~llasgs~D------------g~I~vwDl~t~~~- 675 (837)
..|.-|.+.... ..+..+.. .......|.|.|++..++.+|+.. |.|.-.+.. ++.
T Consensus 82 ~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~~~~~~~~~~~~~~~G~ilri~~d-G~~p 160 (331)
T PF07995_consen 82 NRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGDGGNDDNAQDPNSLRGKILRIDPD-GSIP 160 (331)
T ss_dssp EEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-TTTGGGGCSTTSSTTEEEEEETT-SSB-
T ss_pred eeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCCCCCcccccccccccceEEEeccc-CcCC
Confidence 245555554431 11122222 233456799999985444444321 233333322 110
Q ss_pred ------------eeEEe-cCCCeeEEEEecCCCEEEEEEcC--C--eEEEEECC--------C------C----------
Q 003236 676 ------------AGVFK-CQSGATQMRFQPRLGRILAAAIE--N--YISILDVE--------T------Q---------- 714 (837)
Q Consensus 676 ------------i~~~~-~~~~i~sl~~sp~g~~llags~d--g--~I~iwDl~--------s------~---------- 714 (837)
...+. .......++|+|..+.|+++... + .|.+..-. . +
T Consensus 161 ~dnP~~~~~~~~~~i~A~GlRN~~~~~~d~~tg~l~~~d~G~~~~dein~i~~G~nYGWP~~~~~~~~~~~~~~~~~~~~ 240 (331)
T PF07995_consen 161 ADNPFVGDDGADSEIYAYGLRNPFGLAFDPNTGRLWAADNGPDGWDEINRIEPGGNYGWPYCEGGPKYSGPPIGDAPSCP 240 (331)
T ss_dssp TTSTTTTSTTSTTTEEEE--SEEEEEEEETTTTEEEEEEE-SSSSEEEEEE-TT-B--TTTBSSSCSTTSS-ECTGSS-T
T ss_pred CCCccccCCCceEEEEEeCCCccccEEEECCCCcEEEEccCCCCCcEEEEeccCCcCCCCCCcCCCCCCCCccccccCCC
Confidence 01111 12235678999985666655432 2 23332110 0 0
Q ss_pred ---eEEEEEcCCCCCEEEEEEcC-------CCCEEEEEe-CCeEEEEEcCCCCCceeEEE-eecCCCceEEEEEeCCCCE
Q 003236 715 ---VCRLKLQGHKNQVHSVCWNT-------SGEYLASVS-DELVRVWSIGSGSKGECIHE-LSCTGNKFHSCVFHPTFPS 782 (837)
Q Consensus 715 ---~~~~~l~~h~~~V~sl~~sp-------dg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~-~~~~~~~I~sv~fspdg~~ 782 (837)
.++..+..| ..+..+.|.. .+.+|++.. .+.|....+........... +......+..+++.|||..
T Consensus 241 ~~~~P~~~~~~~-~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~pDG~L 319 (331)
T PF07995_consen 241 GFVPPVFAYPPH-SAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTEEEEFLGGFGGRPRDVAQGPDGAL 319 (331)
T ss_dssp TS---SEEETTT---EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEEECTTSSS-EEEEEEETTSEE
T ss_pred CcCccceeecCc-cccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccceEEccccCCCCceEEEEcCCCeE
Confidence 123334433 5566777754 345666555 66888888865422122222 2334457999999999987
Q ss_pred EEEEEcCCeEE
Q 003236 783 LLVIGCYETLE 793 (837)
Q Consensus 783 L~sgs~dg~I~ 793 (837)
.++...+|.|+
T Consensus 320 yv~~d~~G~iy 330 (331)
T PF07995_consen 320 YVSDDSDGKIY 330 (331)
T ss_dssp EEEE-TTTTEE
T ss_pred EEEECCCCeEe
Confidence 77777777764
|
The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B .... |
| >KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.85 E-value=0.025 Score=63.59 Aligned_cols=142 Identities=17% Similarity=0.203 Sum_probs=101.7
Q ss_pred CCCeEEEEEeCCCcEEEEECCCCeeeeEEecCCCeeEEEEecCCCE-------EEEEEcCCeEEEEECCCC-e-EEEEEc
Q 003236 651 SKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGR-------ILAAAIENYISILDVETQ-V-CRLKLQ 721 (837)
Q Consensus 651 dg~~llasgs~Dg~I~vwDl~t~~~i~~~~~~~~i~sl~~sp~g~~-------llags~dg~I~iwDl~s~-~-~~~~l~ 721 (837)
+.+.++.++.....|+-.|++.|+.+.....+..|+-+.+.|+.+. -++|-.++.|.-||.+-. . .+....
T Consensus 344 dsnlil~~~~~~~~l~klDIE~GKIVeEWk~~~di~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q 423 (644)
T KOG2395|consen 344 DSNLILMDGGEQDKLYKLDIERGKIVEEWKFEDDINMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQ 423 (644)
T ss_pred ccceEeeCCCCcCcceeeecccceeeeEeeccCCcceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeee
Confidence 3455666677777899999999999999999888999999987543 466778899999998843 2 222222
Q ss_pred CC----CCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEE
Q 003236 722 GH----KNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWN 796 (837)
Q Consensus 722 ~h----~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fspdg~~L~sgs~dg~I~IwD 796 (837)
+| .....|++-..+| +|++|+ +|.|++||- .+. .....+++.+.+|..+..+.+|++|++. ++..|.+.+
T Consensus 424 ~kqy~~k~nFsc~aTT~sG-~IvvgS~~GdIRLYdr-i~~--~AKTAlPgLG~~I~hVdvtadGKwil~T-c~tyLlLi~ 498 (644)
T KOG2395|consen 424 SKQYSTKNNFSCFATTESG-YIVVGSLKGDIRLYDR-IGR--RAKTALPGLGDAIKHVDVTADGKWILAT-CKTYLLLID 498 (644)
T ss_pred ccccccccccceeeecCCc-eEEEeecCCcEEeehh-hhh--hhhhcccccCCceeeEEeeccCcEEEEe-cccEEEEEE
Confidence 22 2345666665555 555666 999999997 332 3344577788999999999999976654 455666666
Q ss_pred C
Q 003236 797 M 797 (837)
Q Consensus 797 l 797 (837)
+
T Consensus 499 t 499 (644)
T KOG2395|consen 499 T 499 (644)
T ss_pred E
Confidence 4
|
|
| >smart00320 WD40 WD40 repeats | Back alignment and domain information |
|---|
Probab=96.85 E-value=0.0032 Score=43.62 Aligned_cols=39 Identities=41% Similarity=0.578 Sum_probs=34.4
Q ss_pred CeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEE
Q 003236 587 FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWD 625 (837)
Q Consensus 587 ~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWD 625 (837)
++.+..+..|...|.++.|.+++.++++++.|+.|++|+
T Consensus 2 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 2 GELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred cEEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 345667778899999999999999999999999999996
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. |
| >KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=96.77 E-value=2.2 Score=51.96 Aligned_cols=286 Identities=13% Similarity=0.007 Sum_probs=148.2
Q ss_pred ccCCCccccCCCeEEcccCCCceEEeecCCCCCCCCccccccccCCCeeeeEEEEecCCCCCeEEEEEcC-C---CCEEE
Q 003236 496 TSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSP-D---GKLLA 571 (837)
Q Consensus 496 ~~~~~~l~~~~~~v~~Gs~D~~v~~w~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~H~~~V~sl~fSp-d---g~~La 571 (837)
.++...-.-++.++..||.-++-.+.......+.. ......+. + ..-++|..++.-. + +.-++
T Consensus 307 siassi~~L~ng~lFvGS~~gdSqLi~L~~e~d~g-sy~~ilet-----------~-~NLgPI~Dm~Vvd~d~q~q~qiv 373 (1096)
T KOG1897|consen 307 SIASSINYLDNGVLFVGSRFGDSQLIKLNTEPDVG-SYVVILET-----------F-VNLGPIVDMCVVDLDRQGQGQIV 373 (1096)
T ss_pred chhhhhhcccCceEEEeccCCceeeEEccccCCCC-chhhhhhh-----------c-ccccceeeEEEEeccccCCceEE
Confidence 33333334456788888887776665443333221 11111110 1 1234677766544 2 22455
Q ss_pred EEE---CCCcEEEEeCCCC-e--EEEEeccCCCCeEEEE--EcCC-CCEEEEEeCCCeEEEEEcCCCCceeEEeeccccc
Q 003236 572 TGG---HDKKAVLWCTESF-T--VKSTLEEHTQWITDVR--FSPS-LSRLATSSADRTVRVWDTENPDYSLRTFTGHSTT 642 (837)
Q Consensus 572 sgs---~Dg~I~VWd~~t~-~--~~~~l~~h~~~I~~l~--fspd-g~~Latgs~Dg~I~IWDl~~~~~~~~~~~~h~~~ 642 (837)
|++ .||+++|..-.=+ . ....+.+ -..++.+. ++++ ..+|+.+ .-+.-++..+... .......+....
T Consensus 374 tCsGa~kdgSLRiiRngi~I~e~A~i~l~G-ikg~w~lk~~v~~~~d~ylvls-f~~eTrvl~i~~e-~ee~~~~gf~~~ 450 (1096)
T KOG1897|consen 374 TCSGAFKDGSLRIIRNGIGIDELASIDLPG-IKGMWSLKSMVDENYDNYLVLS-FISETRVLNISEE-VEETEDPGFSTD 450 (1096)
T ss_pred EEeCCCCCCcEEEEecccccceeeEeecCC-ccceeEeeccccccCCcEEEEE-eccceEEEEEccc-eEEecccccccc
Confidence 543 5889999863321 1 1223344 34567777 4442 2355554 3344566666542 223333333344
Q ss_pred eEEEEEcCC-CCeEEEEEeCCCcEEEEECCCCeeeeEEecCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEE-E
Q 003236 643 VMSLDFHPS-KEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLK-L 720 (837)
Q Consensus 643 V~sl~fspd-g~~llasgs~Dg~I~vwDl~t~~~i~~~~~~~~i~sl~~sp~g~~llags~dg~I~iwDl~s~~~~~~-l 720 (837)
...+..+-- ++.++ =.. ...|++++-. ..+..+.....++....+.+...++.++.++.+...++..+..... -
T Consensus 451 ~~Tif~S~i~g~~lv-QvT-s~~iRl~ss~--~~~~~W~~p~~~ti~~~~~n~sqVvvA~~~~~l~y~~i~~~~l~e~~~ 526 (1096)
T KOG1897|consen 451 EQTIFCSTINGNQLV-QVT-SNSIRLVSSA--GLRSEWRPPGKITIGVVSANASQVVVAGGGLALFYLEIEDGGLREVSH 526 (1096)
T ss_pred CceEEEEccCCceEE-EEe-cccEEEEcch--hhhhcccCCCceEEEEEeecceEEEEecCccEEEEEEeeccceeeeee
Confidence 444444322 22222 222 3457777655 2333444456666666666666788888888888888776652211 1
Q ss_pred cCCCCCEEEEEEcCCC------CEEEEEe-CCeE-EEEEcCCCCCceeEEEee--cCCCceEEEEEeCCCCEEEEEEcCC
Q 003236 721 QGHKNQVHSVCWNTSG------EYLASVS-DELV-RVWSIGSGSKGECIHELS--CTGNKFHSCVFHPTFPSLLVIGCYE 790 (837)
Q Consensus 721 ~~h~~~V~sl~~spdg------~~Lasgs-Dg~I-~IwDl~s~~~~~~i~~~~--~~~~~I~sv~fspdg~~L~sgs~dg 790 (837)
...+..|.|+.++|-| .++++|. +..+ .+.-+.+.. ..+...+. .-...|.-..|-.|..+|+++..||
T Consensus 527 ~~~e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~~pd~~-~~~~~~l~~~~iPRSIl~~~~e~d~~yLlvalgdG 605 (1096)
T KOG1897|consen 527 KEFEYEVACLDISPLGDAPNKSRLLAVGLWSDISMILTFLPDLI-LITHEQLSGEIIPRSILLTTFEGDIHYLLVALGDG 605 (1096)
T ss_pred heecceeEEEecccCCCCCCcceEEEEEeecceEEEEEECCCcc-eeeeeccCCCccchheeeEEeeccceEEEEEcCCc
Confidence 2245689999999742 2677777 5543 333333321 01111111 1233455566777788999999999
Q ss_pred eEEEE--ECCCCcE
Q 003236 791 TLELW--NMTENKT 802 (837)
Q Consensus 791 ~I~Iw--Dl~s~~~ 802 (837)
.+.-| |..++..
T Consensus 606 ~l~~fv~d~~tg~l 619 (1096)
T KOG1897|consen 606 ALLYFVLDINTGQL 619 (1096)
T ss_pred eEEEEEEEcccceE
Confidence 77655 5555543
|
|
| >PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2 | Back alignment and domain information |
|---|
Probab=96.75 E-value=1 Score=47.76 Aligned_cols=180 Identities=9% Similarity=0.014 Sum_probs=107.4
Q ss_pred cceEEEEEcCCCCeEEEEEeCCC--cEEEEECCCCeeeeEEecCCCee--EEEEecCCCEEEEEE-cCCeEEEEECCCCe
Q 003236 641 TTVMSLDFHPSKEDLLCSCDNNS--EIRYWSINNGSCAGVFKCQSGAT--QMRFQPRLGRILAAA-IENYISILDVETQV 715 (837)
Q Consensus 641 ~~V~sl~fspdg~~llasgs~Dg--~I~vwDl~t~~~i~~~~~~~~i~--sl~~sp~g~~llags-~dg~I~iwDl~s~~ 715 (837)
.....+.|..++ .++-+.+.-| .|+.+|+.+++.......+.... .++.. ++.|+.-+ .++...+||..+.+
T Consensus 45 aFTQGL~~~~~g-~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~--~d~l~qLTWk~~~~f~yd~~tl~ 121 (264)
T PF05096_consen 45 AFTQGLEFLDDG-TLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITIL--GDKLYQLTWKEGTGFVYDPNTLK 121 (264)
T ss_dssp -EEEEEEEEETT-EEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEE--TTEEEEEESSSSEEEEEETTTTE
T ss_pred ccCccEEecCCC-EEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEE--CCEEEEEEecCCeEEEEccccce
Confidence 445678886554 4666766555 79999999999888877655433 34444 34555554 47899999999998
Q ss_pred EEEEEcCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCC---CceEEEEEeCCCCEEEEEEcCCe
Q 003236 716 CRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTG---NKFHSCVFHPTFPSLLVIGCYET 791 (837)
Q Consensus 716 ~~~~l~~h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~---~~I~sv~fspdg~~L~sgs~dg~ 791 (837)
.+.++. ....=..++ .|+..|+.+. ...|+++|..+......+... ..+ ..++.+.|. +|...+=.-....
T Consensus 122 ~~~~~~-y~~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~-~~g~pv~~LNELE~i-~G~IyANVW~td~ 196 (264)
T PF05096_consen 122 KIGTFP-YPGEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVT-DNGRPVSNLNELEYI-NGKIYANVWQTDR 196 (264)
T ss_dssp EEEEEE--SSS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-E-ETTEE---EEEEEEE-TTEEEEEETTSSE
T ss_pred EEEEEe-cCCcceEEE--cCCCEEEEECCccceEEECCcccceEEEEEEE-ECCEECCCcEeEEEE-cCEEEEEeCCCCe
Confidence 888876 345556676 3455555444 778999998776432322222 122 234556665 4443333334558
Q ss_pred EEEEECCCCcEEEec-------------cC---CCCeeEEEEeCCCCEEEEEE
Q 003236 792 LELWNMTENKTLTLS-------------AH---DKLVSSLAASTVNGMVASAS 828 (837)
Q Consensus 792 I~IwDl~s~~~~~l~-------------~h---~~~V~sla~spdg~~LaSgs 828 (837)
|...|..+|+++... .+ ....+.||+.|..+.|...+
T Consensus 197 I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTG 249 (264)
T PF05096_consen 197 IVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTG 249 (264)
T ss_dssp EEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEE
T ss_pred EEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEe
Confidence 888999999887321 01 35689999998876555444
|
3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X. |
| >COG3490 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=96.73 E-value=0.12 Score=54.38 Aligned_cols=170 Identities=14% Similarity=0.131 Sum_probs=113.9
Q ss_pred cCCCCeEEEEEeCCCcEEEEECCCCeeeeEEecCCCeeEEEEecCCCEEEE-EEcCC-eEEEEECCCCeEEEEEcCCCC-
Q 003236 649 HPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILA-AAIEN-YISILDVETQVCRLKLQGHKN- 725 (837)
Q Consensus 649 spdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~~~~i~sl~~sp~g~~lla-gs~dg-~I~iwDl~s~~~~~~l~~h~~- 725 (837)
.+|+.+.+++.+.+ |+++...........++++|....-++ +-.-| ...+||........++...+.
T Consensus 44 ~~dgs~g~a~~~ea----------Gk~v~~~~lpaR~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~R 113 (366)
T COG3490 44 ARDGSFGAATLSEA----------GKIVFATALPARGHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGR 113 (366)
T ss_pred ccCCceeEEEEccC----------CceeeeeecccccCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCc
Confidence 34555555555444 566666666677788888887655443 43444 567889887755544432221
Q ss_pred -CEEEEEEcCCCCEEEEEe------CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcC---------
Q 003236 726 -QVHSVCWNTSGEYLASVS------DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCY--------- 789 (837)
Q Consensus 726 -~V~sl~~spdg~~Lasgs------Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fspdg~~L~sgs~d--------- 789 (837)
..-.-+|++||.+|+... -|.|-|||.+.+ ...+-++..++-.-..+.+.+||+.++++...
T Consensus 114 HfyGHGvfs~dG~~LYATEndfd~~rGViGvYd~r~~--fqrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR 191 (366)
T COG3490 114 HFYGHGVFSPDGRLLYATENDFDPNRGVIGVYDAREG--FQRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGR 191 (366)
T ss_pred eeecccccCCCCcEEEeecCCCCCCCceEEEEecccc--cceecccccCCcCcceeEEecCCcEEEEeCCceecccccCc
Confidence 112347999999999875 248999999854 36777888888888999999999988887541
Q ss_pred ---------CeEEEEECCCCcEE---Eec--cCCCCeeEEEEeCCCCEEEEEECC
Q 003236 790 ---------ETLELWNMTENKTL---TLS--AHDKLVSSLAASTVNGMVASASHD 830 (837)
Q Consensus 790 ---------g~I~IwDl~s~~~~---~l~--~h~~~V~sla~spdg~~LaSgs~D 830 (837)
-.+.+.|..++.++ ++. .+...|..++..+||..++.|-..
T Consensus 192 ~~lNldsMePSlvlld~atG~liekh~Lp~~l~~lSiRHld~g~dgtvwfgcQy~ 246 (366)
T COG3490 192 TELNLDSMEPSLVLLDAATGNLIEKHTLPASLRQLSIRHLDIGRDGTVWFGCQYR 246 (366)
T ss_pred cccchhhcCccEEEEeccccchhhhccCchhhhhcceeeeeeCCCCcEEEEEEee
Confidence 14555665666655 232 455678899999998877766443
|
|
| >PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus | Back alignment and domain information |
|---|
Probab=96.73 E-value=0.3 Score=55.34 Aligned_cols=88 Identities=23% Similarity=0.357 Sum_probs=55.2
Q ss_pred EEEEcCCCCEEEEEECCCcEEE---EeCC-----CCeEEEEec---cCC--CCeEEEEEcC-----------CCCEEEEE
Q 003236 560 SCHFSPDGKLLATGGHDKKAVL---WCTE-----SFTVKSTLE---EHT--QWITDVRFSP-----------SLSRLATS 615 (837)
Q Consensus 560 sl~fSpdg~~Lasgs~Dg~I~V---Wd~~-----t~~~~~~l~---~h~--~~I~~l~fsp-----------dg~~Latg 615 (837)
+++.+|++++||.+..+..|.+ |+.. ......... .+. +.|+++.|-| |...+++|
T Consensus 6 ~isls~~~d~laiA~~~r~vil~~~w~~~~~~~~~~~~~~~~~g~l~~~~~e~ITsi~clpl~s~~~s~~~~dw~~I~VG 85 (415)
T PF14655_consen 6 SISLSPDGDLLAIARGQRLVILTSKWDSSRKGENENTYSISWSGPLDDEPGECITSILCLPLSSQKRSTGGPDWTCIAVG 85 (415)
T ss_pred eEEecCCCCEEEEEcCCEEEEEEeeccccccCCCCCeEEEEeeeeccCCCCCEEEEEEEEEeecccccCCCCCcEEEEEE
Confidence 4788999999999987776655 5331 112222211 122 5677777643 45789999
Q ss_pred eCCCeEEEEEcCCCCceeEEeeccccceEEEEEc
Q 003236 616 SADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFH 649 (837)
Q Consensus 616 s~Dg~I~IWDl~~~~~~~~~~~~h~~~V~sl~fs 649 (837)
..+|.|++|.... .. +..-.-|..+|..|.+.
T Consensus 86 ~ssG~vrfyte~G-~L-L~~Q~~h~~pV~~ik~~ 117 (415)
T PF14655_consen 86 TSSGYVRFYTENG-VL-LLSQLLHEEPVLKIKCR 117 (415)
T ss_pred ecccEEEEEeccc-hH-HHHHhcCccceEEEEec
Confidence 9999999998753 32 32223356666666654
|
|
| >COG3204 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=96.72 E-value=0.4 Score=50.87 Aligned_cols=163 Identities=12% Similarity=0.154 Sum_probs=106.2
Q ss_pred ecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEecc-CCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCC
Q 003236 551 IPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEE-HTQWITDVRFSPSLSRLATSSADRTVRVWDTENP 629 (837)
Q Consensus 551 l~~H~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~-h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~~ 629 (837)
+.+-...|.++.|+|+.+.|++......-.||=...|..+.++.- .-.....|.|..++.++++--.+..+.++.++..
T Consensus 81 i~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~ 160 (316)
T COG3204 81 ILGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDAD 160 (316)
T ss_pred cccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcCC
Confidence 344455599999999999998888888888887788899887742 1223456778878888888777899999888755
Q ss_pred Ccee---------EEeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCe-eee--EEec--------CCCeeEEE
Q 003236 630 DYSL---------RTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS-CAG--VFKC--------QSGATQMR 689 (837)
Q Consensus 630 ~~~~---------~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~-~i~--~~~~--------~~~i~sl~ 689 (837)
...+ ......+.....++|+|....+++ +-+..-+.||.+.... .+. .... -..+.++.
T Consensus 161 t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~-aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~ 239 (316)
T COG3204 161 TTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFV-AKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLE 239 (316)
T ss_pred ccEEeccceEEeccccCCCCcCceeeecCCCCceEEE-EEccCCcEEEEEecCCcccccccccCcccccceEeeccccce
Confidence 3221 111222556789999999876664 4445556666555322 111 0000 13466788
Q ss_pred EecCCCEEEEEE-cCCeEEEEECCCC
Q 003236 690 FQPRLGRILAAA-IENYISILDVETQ 714 (837)
Q Consensus 690 ~sp~g~~llags-~dg~I~iwDl~s~ 714 (837)
|.+..+.+++-+ +++.+...|....
T Consensus 240 ~~~~~~~LLVLS~ESr~l~Evd~~G~ 265 (316)
T COG3204 240 FNAITNSLLVLSDESRRLLEVDLSGE 265 (316)
T ss_pred ecCCCCcEEEEecCCceEEEEecCCC
Confidence 887666655544 5567777776643
|
|
| >COG1520 FOG: WD40-like repeat [Function unknown] | Back alignment and domain information |
|---|
Probab=96.68 E-value=1.6 Score=49.12 Aligned_cols=194 Identities=10% Similarity=0.053 Sum_probs=106.9
Q ss_pred CCCCEEEEEECCCcEEEEeCCCCeEEEEeccC--CCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeEEeeccc-c
Q 003236 565 PDGKLLATGGHDKKAVLWCTESFTVKSTLEEH--TQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHS-T 641 (837)
Q Consensus 565 pdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h--~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~~~~~~~~~~~h~-~ 641 (837)
-|| .++++..||.|.-+|.++++.+.....- ...+.+-.+..+|+ |+.++.++.++.+|..++.. +..+.... .
T Consensus 67 ~dg-~v~~~~~~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~~G~-i~~g~~~g~~y~ld~~~G~~-~W~~~~~~~~ 143 (370)
T COG1520 67 GDG-TVYVGTRDGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGSDGK-IYVGSWDGKLYALDASTGTL-VWSRNVGGSP 143 (370)
T ss_pred eCC-eEEEecCCCcEEEEeCCCCcEEecccCcCcceeccCceEEeCCe-EEEecccceEEEEECCCCcE-EEEEecCCCe
Confidence 355 4444577888888888888866433222 12333333333665 88888899899999977664 33333333 1
Q ss_pred ceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeeEEecCCCe-eEEE--EecCCCEEEEEEc--CCeEEEEECCCCeE
Q 003236 642 TVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGA-TQMR--FQPRLGRILAAAI--ENYISILDVETQVC 716 (837)
Q Consensus 642 ~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~~~~i-~sl~--~sp~g~~llags~--dg~I~iwDl~s~~~ 716 (837)
.+..-....++ .++.++.++.+...|..+++....+.....+ ..+. .......++.+.. ++.+.-+|.+++..
T Consensus 144 ~~~~~~v~~~~--~v~~~s~~g~~~al~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~vy~~~~~~~~~~~a~~~~~G~~ 221 (370)
T COG1520 144 YYASPPVVGDG--TVYVGTDDGHLYALNADTGTLKWTYETPAPLSLSIYGSPAIASGTVYVGSDGYDGILYALNAEDGTL 221 (370)
T ss_pred EEecCcEEcCc--EEEEecCCCeEEEEEccCCcEEEEEecCCccccccccCceeecceEEEecCCCcceEEEEEccCCcE
Confidence 12222222232 3434446899999999999988776653320 0111 1123345666655 66788888888877
Q ss_pred EEEEcCCC----CCE------EEEEEcCCCCEEEEEeCCeEEEEEcCCCCCceeEEEeec
Q 003236 717 RLKLQGHK----NQV------HSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSC 766 (837)
Q Consensus 717 ~~~l~~h~----~~V------~sl~~spdg~~LasgsDg~I~IwDl~s~~~~~~i~~~~~ 766 (837)
....+.+. ..+ ..-...-++..++...++.+...|..++ +.+..+..
T Consensus 222 ~w~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~g~~~~l~~~~G---~~~W~~~~ 278 (370)
T COG1520 222 KWSQKVSQTIGRTAISTTPAVDGGPVYVDGGVYAGSYGGKLLCLDADTG---ELIWSFPA 278 (370)
T ss_pred eeeeeeecccCcccccccccccCceEEECCcEEEEecCCeEEEEEcCCC---ceEEEEec
Confidence 76643111 111 0001111233333333777888888877 44444443
|
|
| >COG5276 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.66 E-value=0.96 Score=47.98 Aligned_cols=195 Identities=13% Similarity=0.092 Sum_probs=115.7
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeEEeec-cccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCe
Q 003236 596 HTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTG-HSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS 674 (837)
Q Consensus 596 h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~~~~~~~~~~~-h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~ 674 (837)
-.+.+.++.++. .+.+.+.++.-++|+|+.++..+...-.- ..+.-.++..+ |+ +++.+..|..+.+.|+.+..
T Consensus 85 ~~~l~~Dv~vse--~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt~gyaygv~vs--Gn-~aYVadlddgfLivdvsdps 159 (370)
T COG5276 85 ARDLFADVRVSE--EYVYVADWSSGLRIVDISTPDSPTLIGFLNTDGYAYGVYVS--GN-YAYVADLDDGFLIVDVSDPS 159 (370)
T ss_pred hhhhhheeEecc--cEEEEEcCCCceEEEeccCCCCcceeccccCCceEEEEEec--CC-EEEEeeccCcEEEEECCCCC
Confidence 445677888864 57888888888999999987764433222 22444555555 44 55566656667788887643
Q ss_pred ---eeeEEecCCC-eeEEEEecCCCEEEEEEcCCeEEEEECCCCeE---EEEEcCCCCCEEEEEEcCCCCEEEEEeCCeE
Q 003236 675 ---CAGVFKCQSG-ATQMRFQPRLGRILAAAIENYISILDVETQVC---RLKLQGHKNQVHSVCWNTSGEYLASVSDELV 747 (837)
Q Consensus 675 ---~i~~~~~~~~-i~sl~~sp~g~~llags~dg~I~iwDl~s~~~---~~~l~~h~~~V~sl~~spdg~~LasgsDg~I 747 (837)
....+...+. ...++++ |++.+.++.|+.+.+.|+..... +.... ....+.++..+++..+++....| +
T Consensus 160 sP~lagrya~~~~d~~~v~IS--Gn~AYvA~~d~GL~ivDVSnp~sPvli~~~n-~g~g~~sv~vsdnr~y~vvy~eg-v 235 (370)
T COG5276 160 SPQLAGRYALPGGDTHDVAIS--GNYAYVAWRDGGLTIVDVSNPHSPVLIGSYN-TGPGTYSVSVSDNRAYLVVYDEG-V 235 (370)
T ss_pred CceeeeeeccCCCCceeEEEe--cCeEEEEEeCCCeEEEEccCCCCCeEEEEEe-cCCceEEEEecCCeeEEEEcccc-e
Confidence 2233333222 3455555 56788888999999999986532 22221 23367888887776666655454 6
Q ss_pred EEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCC
Q 003236 748 RVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTEN 800 (837)
Q Consensus 748 ~IwDl~s~~~~~~i~~~~~~~~~I~sv~fspdg~~L~sgs~dg~I~IwDl~s~ 800 (837)
.+-|..+.+....+-..+. .+.+..-.+.-.+++.++...+..+-+.|+.+.
T Consensus 236 livd~s~~ssp~~~gsyet-~~p~~~s~v~Vs~~~~Yvadga~gl~~idisnp 287 (370)
T COG5276 236 LIVDVSGPSSPTVFGSYET-SNPVSISTVPVSGEYAYVADGAKGLPIIDISNP 287 (370)
T ss_pred EEEecCCCCCceEeecccc-CCcccccceecccceeeeeccccCceeEeccCC
Confidence 6777776643333333322 222222133444556666666666666666543
|
|
| >PLN00033 photosystem II stability/assembly factor; Provisional | Back alignment and domain information |
|---|
Probab=96.65 E-value=1.7 Score=49.23 Aligned_cols=147 Identities=11% Similarity=0.066 Sum_probs=83.1
Q ss_pred eEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCeEEEEEcCCCCCce--eEEE
Q 003236 686 TQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGE--CIHE 763 (837)
Q Consensus 686 ~sl~~sp~g~~llags~dg~I~iwDl~s~~~~~~l~~h~~~V~sl~~spdg~~LasgsDg~I~IwDl~s~~~~~--~i~~ 763 (837)
..+...+++..++++.....++-||-....-...-......+.++.|.+++.+++++.+|.+.+ ....+.... .+..
T Consensus 242 ~~v~~~~dG~~~~vg~~G~~~~s~d~G~~~W~~~~~~~~~~l~~v~~~~dg~l~l~g~~G~l~~-S~d~G~~~~~~~f~~ 320 (398)
T PLN00033 242 STVNRSPDGDYVAVSSRGNFYLTWEPGQPYWQPHNRASARRIQNMGWRADGGLWLLTRGGGLYV-SKGTGLTEEDFDFEE 320 (398)
T ss_pred eeEEEcCCCCEEEEECCccEEEecCCCCcceEEecCCCccceeeeeEcCCCCEEEEeCCceEEE-ecCCCCcccccceee
Confidence 3445566655555444433333344322110111122345788999999999998887776544 333332111 2222
Q ss_pred eec--CCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEEEe----ccCCCCeeEEEEeCCCCEEEEEECCCcEEEe
Q 003236 764 LSC--TGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTL----SAHDKLVSSLAASTVNGMVASASHDKCVKIW 836 (837)
Q Consensus 764 ~~~--~~~~I~sv~fspdg~~L~sgs~dg~I~IwDl~s~~~~~l----~~h~~~V~sla~spdg~~LaSgs~DG~I~IW 836 (837)
... ....+..+.|.+++. +++++..|.|... ...++.... ..-...++.+.|.++++.+++| .+|.|.-|
T Consensus 321 ~~~~~~~~~l~~v~~~~d~~-~~a~G~~G~v~~s-~D~G~tW~~~~~~~~~~~~ly~v~f~~~~~g~~~G-~~G~il~~ 396 (398)
T PLN00033 321 ADIKSRGFGILDVGYRSKKE-AWAAGGSGILLRS-TDGGKSWKRDKGADNIAANLYSVKFFDDKKGFVLG-NDGVLLRY 396 (398)
T ss_pred cccCCCCcceEEEEEcCCCc-EEEEECCCcEEEe-CCCCcceeEccccCCCCcceeEEEEcCCCceEEEe-CCcEEEEe
Confidence 222 224588899998776 6666777766555 455554422 2334568899998776666654 77887665
|
|
| >KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.64 E-value=0.0074 Score=69.05 Aligned_cols=93 Identities=17% Similarity=0.238 Sum_probs=77.1
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeEEeeccccceE-EEEEcCCCCeEEEEEeCCCcEEEEECCCCee
Q 003236 597 TQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVM-SLDFHPSKEDLLCSCDNNSEIRYWSINNGSC 675 (837)
Q Consensus 597 ~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~-sl~fspdg~~llasgs~Dg~I~vwDl~t~~~ 675 (837)
.-.|.-+.|+|.-.+||++..+|.|.++.+.- ..+.++.-|...++ +++|.|||+ +++.|-.||+|++.|+.++..
T Consensus 20 ~~~i~~~ewnP~~dLiA~~t~~gelli~R~n~--qRlwtip~p~~~v~~sL~W~~DGk-llaVg~kdG~I~L~Dve~~~~ 96 (665)
T KOG4640|consen 20 PINIKRIEWNPKMDLIATRTEKGELLIHRLNW--QRLWTIPIPGENVTASLCWRPDGK-LLAVGFKDGTIRLHDVEKGGR 96 (665)
T ss_pred ccceEEEEEcCccchhheeccCCcEEEEEecc--ceeEeccCCCCccceeeeecCCCC-EEEEEecCCeEEEEEccCCCc
Confidence 34578899999999999999999999998883 34677776777777 999999966 788999999999999999988
Q ss_pred eeE--EecCCCeeEEEEec
Q 003236 676 AGV--FKCQSGATQMRFQP 692 (837)
Q Consensus 676 i~~--~~~~~~i~sl~~sp 692 (837)
+.. +.....|.++.|.+
T Consensus 97 l~~~~~s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 97 LVSFLFSVETDISKGIWDR 115 (665)
T ss_pred eeccccccccchheeeccc
Confidence 877 55567788888864
|
|
| >KOG2444 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.56 E-value=0.0024 Score=64.77 Aligned_cols=140 Identities=14% Similarity=0.061 Sum_probs=81.3
Q ss_pred EEEEEeCCCeEEEEEcCCCCceeEEeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeee-EEe-cCCCeeEE
Q 003236 611 RLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAG-VFK-CQSGATQM 688 (837)
Q Consensus 611 ~Latgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~-~~~-~~~~i~sl 688 (837)
.|..-+.||.|+-+++...+...+....|...-.-+.+ ..-+++|+.+|.|++|...-..... .+. ....|.++
T Consensus 32 ~l~~~sa~~~v~~~~~~k~k~s~rse~~~~e~~~v~~~----~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~ 107 (238)
T KOG2444|consen 32 LLRATSADGLVRERKVRKHKESCRSERFIDEGQRVVTA----SAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLG 107 (238)
T ss_pred hhccccCCcccccchhhhhhhhhhhhhhhhcceeeccc----CceEEeecccceEEEecCCccchHHHhhhcccccceec
Confidence 34455678888888877544333332223222111222 2235578889999999887321111 111 11223322
Q ss_pred -EEecCCCEEEEEEcCCeEEEEECCCCeEEEEEcCCC-CCEEEEEEcCCCCEEEEE--e-CCeEEEEEcCC
Q 003236 689 -RFQPRLGRILAAAIENYISILDVETQVCRLKLQGHK-NQVHSVCWNTSGEYLASV--S-DELVRVWSIGS 754 (837)
Q Consensus 689 -~~sp~g~~llags~dg~I~iwDl~s~~~~~~l~~h~-~~V~sl~~spdg~~Lasg--s-Dg~I~IwDl~s 754 (837)
....++.+..+++.+|.|+.|++.-.+.+-....|. .++..+..+..+++|+++ + |..++.|++..
T Consensus 108 Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~ 178 (238)
T KOG2444|consen 108 IPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGEELIVVGSDEFLKIADTSHDRVLKKWNVEK 178 (238)
T ss_pred cccccccceeEEeccCCceeeeccccCceeeeeccccCCCcceeEEecCCceEEeeccccchhhhhcchhh
Confidence 223345577888999999999999888777766676 455555555555556555 4 66666676654
|
|
| >PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases | Back alignment and domain information |
|---|
Probab=96.54 E-value=1 Score=49.88 Aligned_cols=232 Identities=11% Similarity=0.122 Sum_probs=117.6
Q ss_pred CeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCC-ceeEEe----eccccceEEEEEcCC---CCeEEEEEeCC--------
Q 003236 599 WITDVRFSPSLSRLATSSADRTVRVWDTENPD-YSLRTF----TGHSTTVMSLDFHPS---KEDLLCSCDNN-------- 662 (837)
Q Consensus 599 ~I~~l~fspdg~~Latgs~Dg~I~IWDl~~~~-~~~~~~----~~h~~~V~sl~fspd---g~~llasgs~D-------- 662 (837)
..+.|+|.||+++|++ ...|.|++++..... ..+..+ .........++++|+ +..++++.+..
T Consensus 3 ~P~~~a~~pdG~l~v~-e~~G~i~~~~~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~~ 81 (331)
T PF07995_consen 3 NPRSMAFLPDGRLLVA-ERSGRIWVVDKDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDND 81 (331)
T ss_dssp SEEEEEEETTSCEEEE-ETTTEEEEEETTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSEE
T ss_pred CceEEEEeCCCcEEEE-eCCceEEEEeCCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCcc
Confidence 3578999999877665 569999999933221 122222 233467899999994 23344333321
Q ss_pred CcEEEEECCCC--e-----ee-eEEec----CCCeeEEEEecCCCEEEEEEcCC-------------eEEEEECCCCe--
Q 003236 663 SEIRYWSINNG--S-----CA-GVFKC----QSGATQMRFQPRLGRILAAAIEN-------------YISILDVETQV-- 715 (837)
Q Consensus 663 g~I~vwDl~t~--~-----~i-~~~~~----~~~i~sl~~sp~g~~llags~dg-------------~I~iwDl~s~~-- 715 (837)
..|.-|....+ . .+ ..... ......+.|.|++..+++.+..+ .|.-++.....
T Consensus 82 ~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~~~~~~~~~~~~~~~G~ilri~~dG~~p~ 161 (331)
T PF07995_consen 82 NRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGDGGNDDNAQDPNSLRGKILRIDPDGSIPA 161 (331)
T ss_dssp EEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-TTTGGGGCSTTSSTTEEEEEETTSSB-T
T ss_pred eeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCCCCCcccccccccccceEEEecccCcCCC
Confidence 24544554433 1 11 11111 23356799999986555554422 33333332110
Q ss_pred ------------EEEEEcCCCCCEEEEEEcCC-CCEEEEEe--CCeEEEEEcCCCCC-----------------------
Q 003236 716 ------------CRLKLQGHKNQVHSVCWNTS-GEYLASVS--DELVRVWSIGSGSK----------------------- 757 (837)
Q Consensus 716 ------------~~~~l~~h~~~V~sl~~spd-g~~Lasgs--Dg~I~IwDl~s~~~----------------------- 757 (837)
.+. -.++. ....++|+|. |.++++-. |..=.|.-+..+..
T Consensus 162 dnP~~~~~~~~~~i~-A~GlR-N~~~~~~d~~tg~l~~~d~G~~~~dein~i~~G~nYGWP~~~~~~~~~~~~~~~~~~~ 239 (331)
T PF07995_consen 162 DNPFVGDDGADSEIY-AYGLR-NPFGLAFDPNTGRLWAADNGPDGWDEINRIEPGGNYGWPYCEGGPKYSGPPIGDAPSC 239 (331)
T ss_dssp TSTTTTSTTSTTTEE-EE--S-EEEEEEEETTTTEEEEEEE-SSSSEEEEEE-TT-B--TTTBSSSCSTTSS-ECTGSS-
T ss_pred CCccccCCCceEEEE-EeCCC-ccccEEEECCCCcEEEEccCCCCCcEEEEeccCCcCCCCCCcCCCCCCCCccccccCC
Confidence 000 01122 3457899998 76666533 43222322322210
Q ss_pred ---ceeEEEeecCCCceEEEEEeCC-------CCEEEEEEcCCeEEEEECCCCcEE----Ee-ccCCCCeeEEEEeCCCC
Q 003236 758 ---GECIHELSCTGNKFHSCVFHPT-------FPSLLVIGCYETLELWNMTENKTL----TL-SAHDKLVSSLAASTVNG 822 (837)
Q Consensus 758 ---~~~i~~~~~~~~~I~sv~fspd-------g~~L~sgs~dg~I~IwDl~s~~~~----~l-~~h~~~V~sla~spdg~ 822 (837)
..++..+.. ...+..+.|... +.+|++.-..+.|....++.+..+ .+ ......+..|++.|||.
T Consensus 240 ~~~~~P~~~~~~-~~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~pDG~ 318 (331)
T PF07995_consen 240 PGFVPPVFAYPP-HSAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTEEEEFLGGFGGRPRDVAQGPDGA 318 (331)
T ss_dssp TTS---SEEETT-T--EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEEECTTSSS-EEEEEEETTSE
T ss_pred CCcCccceeecC-ccccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccceEEccccCCCCceEEEEcCCCe
Confidence 012222222 244566666543 333444444558888888755333 22 23445899999999999
Q ss_pred EEEEEECCCcEE
Q 003236 823 MVASASHDKCVK 834 (837)
Q Consensus 823 ~LaSgs~DG~I~ 834 (837)
++++.+.+|.|+
T Consensus 319 Lyv~~d~~G~iy 330 (331)
T PF07995_consen 319 LYVSDDSDGKIY 330 (331)
T ss_dssp EEEEE-TTTTEE
T ss_pred EEEEECCCCeEe
Confidence 999988899874
|
The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B .... |
| >KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.53 E-value=0.25 Score=50.55 Aligned_cols=136 Identities=12% Similarity=0.116 Sum_probs=91.8
Q ss_pred CCCeEEEEEcCCCCEEEEEeC---------CCeEEEEEcCCCCceeEEeeccccceEEEEEcCCCCeEEEEEeCCCcEEE
Q 003236 597 TQWITDVRFSPSLSRLATSSA---------DRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRY 667 (837)
Q Consensus 597 ~~~I~~l~fspdg~~Latgs~---------Dg~I~IWDl~~~~~~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~v 667 (837)
+...++-..+|+|++++-.-. .|.++.|-.... +..+...-.--+.++|+.+.+.+.++-+.+-+|.-
T Consensus 108 knR~NDgkvdP~Gryy~GtMad~~~~le~~~g~Ly~~~~~h~---v~~i~~~v~IsNgl~Wd~d~K~fY~iDsln~~V~a 184 (310)
T KOG4499|consen 108 KNRLNDGKVDPDGRYYGGTMADFGDDLEPIGGELYSWLAGHQ---VELIWNCVGISNGLAWDSDAKKFYYIDSLNYEVDA 184 (310)
T ss_pred hcccccCccCCCCceeeeeeccccccccccccEEEEeccCCC---ceeeehhccCCccccccccCcEEEEEccCceEEee
Confidence 445667778899998432222 245555554431 22222233444678999888888888888889988
Q ss_pred EE--CCCCe-----eeeEEec-----CCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEcCC
Q 003236 668 WS--INNGS-----CAGVFKC-----QSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTS 735 (837)
Q Consensus 668 wD--l~t~~-----~i~~~~~-----~~~i~sl~~sp~g~~llags~dg~I~iwDl~s~~~~~~l~~h~~~V~sl~~spd 735 (837)
|| ..+|. .+..++. +-....+++..+|+.++++-..++|..+|..+++.+.+++-....|+|+||--.
T Consensus 185 ~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklPt~qitsccFgGk 264 (310)
T KOG4499|consen 185 YDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIKLPTPQITSCCFGGK 264 (310)
T ss_pred eecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECCCCCcEEEEEEcCCCceEEEEecCC
Confidence 87 44543 2322222 111334566667788888888899999999999999999988999999999643
|
|
| >PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A | Back alignment and domain information |
|---|
Probab=96.47 E-value=0.49 Score=51.47 Aligned_cols=153 Identities=14% Similarity=0.180 Sum_probs=81.7
Q ss_pred eccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeEEeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEEC-C
Q 003236 593 LEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSI-N 671 (837)
Q Consensus 593 l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl-~ 671 (837)
...-.+.+..+..++||+++++++......-||--....... .......|..+.|.|++...+ ....|.|++=+. .
T Consensus 140 ~~~~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~~~-~r~~~~riq~~gf~~~~~lw~--~~~Gg~~~~s~~~~ 216 (302)
T PF14870_consen 140 VSETSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTTWQPH-NRNSSRRIQSMGFSPDGNLWM--LARGGQIQFSDDPD 216 (302)
T ss_dssp E-S----EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-EEE-E--SSS-EEEEEE-TTS-EEE--EETTTEEEEEE-TT
T ss_pred ccCCcceeEeEEECCCCcEEEEECcccEEEEecCCCccceEE-ccCccceehhceecCCCCEEE--EeCCcEEEEccCCC
Confidence 345557899999999999999987777777888764333222 223457899999999966333 336888888772 2
Q ss_pred CCeeeeE----E-ecCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEE---cCCCCCEEEEEEcCCCCEEEEEe
Q 003236 672 NGSCAGV----F-KCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKL---QGHKNQVHSVCWNTSGEYLASVS 743 (837)
Q Consensus 672 t~~~i~~----~-~~~~~i~sl~~sp~g~~llags~dg~I~iwDl~s~~~~~~l---~~h~~~V~sl~~spdg~~Lasgs 743 (837)
..+.-.. + ...-.+..++|.+++. +.+++..|.+. +....++.-... ..-...++.|.|.++.+-++.|.
T Consensus 217 ~~~~w~~~~~~~~~~~~~~ld~a~~~~~~-~wa~gg~G~l~-~S~DgGktW~~~~~~~~~~~n~~~i~f~~~~~gf~lG~ 294 (302)
T PF14870_consen 217 DGETWSEPIIPIKTNGYGILDLAYRPPNE-IWAVGGSGTLL-VSTDGGKTWQKDRVGENVPSNLYRIVFVNPDKGFVLGQ 294 (302)
T ss_dssp EEEEE---B-TTSS--S-EEEEEESSSS--EEEEESTT-EE-EESSTTSS-EE-GGGTTSSS---EEEEEETTEEEEE-S
T ss_pred CccccccccCCcccCceeeEEEEecCCCC-EEEEeCCccEE-EeCCCCccceECccccCCCCceEEEEEcCCCceEEECC
Confidence 2221111 1 1123478899998855 44555555443 334444332222 23355788999988888888898
Q ss_pred CCeEEEE
Q 003236 744 DELVRVW 750 (837)
Q Consensus 744 Dg~I~Iw 750 (837)
+|.|--|
T Consensus 295 ~G~ll~~ 301 (302)
T PF14870_consen 295 DGVLLRY 301 (302)
T ss_dssp TTEEEEE
T ss_pred CcEEEEe
Confidence 9977655
|
|
| >PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3 | Back alignment and domain information |
|---|
Probab=96.45 E-value=1.5 Score=48.95 Aligned_cols=188 Identities=15% Similarity=0.176 Sum_probs=116.7
Q ss_pred CCCCEEEEEECCCcEEEEeCCCCeEEEEeccCCCCeEEEEEcC----CCCE--EEEEeC-C---CeEEEEEcCCCCceeE
Q 003236 565 PDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSP----SLSR--LATSSA-D---RTVRVWDTENPDYSLR 634 (837)
Q Consensus 565 pdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~I~~l~fsp----dg~~--Latgs~-D---g~I~IWDl~~~~~~~~ 634 (837)
|...+++....++-+.+||+.. +.+..+. .+.++.+.... .++. |+.++. + .+|++|.+......+.
T Consensus 66 p~kSlIigTdK~~GL~VYdL~G-k~lq~~~--~Gr~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~id~~~g~L~ 142 (381)
T PF02333_consen 66 PAKSLIIGTDKKGGLYVYDLDG-KELQSLP--VGRPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFRIDPDTGELT 142 (381)
T ss_dssp GGG-EEEEEETTTEEEEEETTS--EEEEE---SS-EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEEEETTTTEEE
T ss_pred cccceEEEEeCCCCEEEEcCCC-cEEEeec--CCCcceeeeecceecCCceEEEEEEecCcCCCCeEEEEEecCCCCcce
Confidence 3455777778888999999875 4555553 23444443321 2332 444443 2 4799998874333343
Q ss_pred Eeec-------cccceEEEEEc--C-CCCeEEEEEeCCCcEEEEECC---CC----eeeeEEecCCCeeEEEEecCCCEE
Q 003236 635 TFTG-------HSTTVMSLDFH--P-SKEDLLCSCDNNSEIRYWSIN---NG----SCAGVFKCQSGATQMRFQPRLGRI 697 (837)
Q Consensus 635 ~~~~-------h~~~V~sl~fs--p-dg~~llasgs~Dg~I~vwDl~---t~----~~i~~~~~~~~i~sl~~sp~g~~l 697 (837)
.+.. ....++.+|+. + ++..+++....+|.+.-|.+. .+ +.++.|...+.+..|........|
T Consensus 143 ~v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~~~sQ~EGCVVDDe~g~L 222 (381)
T PF02333_consen 143 DVTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFKVGSQPEGCVVDDETGRL 222 (381)
T ss_dssp E-CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE-SS-EEEEEEETTTTEE
T ss_pred EcCCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEecCCCcceEEEEecccCCE
Confidence 3321 12346777764 3 456677778889988888764 23 467888888899999999999999
Q ss_pred EEEEcCCeEEEEECCC-----CeEEEEEcC--CCCCEEEEEEcC--CC-CEEEEEe--CCeEEEEEcCCC
Q 003236 698 LAAAIENYISILDVET-----QVCRLKLQG--HKNQVHSVCWNT--SG-EYLASVS--DELVRVWSIGSG 755 (837)
Q Consensus 698 lags~dg~I~iwDl~s-----~~~~~~l~~--h~~~V~sl~~sp--dg-~~Lasgs--Dg~I~IwDl~s~ 755 (837)
+++-++--|.-|+.+- +..+....+ ....|..|++-. ++ .||++++ +++..||+....
T Consensus 223 YvgEE~~GIW~y~Aep~~~~~~~~v~~~~g~~l~aDvEGlaly~~~~g~gYLivSsQG~~sf~Vy~r~~~ 292 (381)
T PF02333_consen 223 YVGEEDVGIWRYDAEPEGGNDRTLVASADGDGLVADVEGLALYYGSDGKGYLIVSSQGDNSFAVYDREGP 292 (381)
T ss_dssp EEEETTTEEEEEESSCCC-S--EEEEEBSSSSB-S-EEEEEEEE-CCC-EEEEEEEGGGTEEEEEESSTT
T ss_pred EEecCccEEEEEecCCCCCCcceeeecccccccccCccceEEEecCCCCeEEEEEcCCCCeEEEEecCCC
Confidence 9999999999998862 233333322 345788887753 43 3666666 889999998764
|
1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A. |
| >TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family | Back alignment and domain information |
|---|
Probab=96.44 E-value=0.78 Score=56.30 Aligned_cols=225 Identities=10% Similarity=0.051 Sum_probs=113.6
Q ss_pred CCEEEEEECCCcEEEEeCCCCeEEEEeccCCCC--------eEEEEEcC----------------CCCEEEEEeCCCeEE
Q 003236 567 GKLLATGGHDKKAVLWCTESFTVKSTLEEHTQW--------ITDVRFSP----------------SLSRLATSSADRTVR 622 (837)
Q Consensus 567 g~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~--------I~~l~fsp----------------dg~~Latgs~Dg~I~ 622 (837)
+..|++++.++.|+-.|..+++.+-.+...... +..+.+.. ++..|+.++.|+.|.
T Consensus 194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~Li 273 (764)
T TIGR03074 194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLI 273 (764)
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEE
Confidence 446667777888989999998888776432211 11233321 345788899999999
Q ss_pred EEEcCCCCceeEEeeccccceE-------------EEEEcC--CCCeEEEEEe----------CCCcEEEEECCCCeeee
Q 003236 623 VWDTENPDYSLRTFTGHSTTVM-------------SLDFHP--SKEDLLCSCD----------NNSEIRYWSINNGSCAG 677 (837)
Q Consensus 623 IWDl~~~~~~~~~~~~h~~~V~-------------sl~fsp--dg~~llasgs----------~Dg~I~vwDl~t~~~i~ 677 (837)
-.|.++++.+. .+. ..+.|. .+.-.| .++.++ .++ .+|.|+-+|+++|+.+.
T Consensus 274 ALDA~TGk~~W-~fg-~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VI-vG~~v~d~~~~~~~~G~I~A~Da~TGkl~W 350 (764)
T TIGR03074 274 ALDADTGKLCE-DFG-NNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVV-IGGRVADNYSTDEPSGVIRAFDVNTGALVW 350 (764)
T ss_pred EEECCCCCEEE-Eec-CCCceeeecccCcCCCcccccccCCEEECCEEE-EEecccccccccCCCcEEEEEECCCCcEee
Confidence 99999987643 221 111110 011111 123334 443 26889999999999999
Q ss_pred EEecCCCeeEEEEecCCCEEEEEEcCC-eEEEEECCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCC
Q 003236 678 VFKCQSGATQMRFQPRLGRILAAAIEN-YISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSG 755 (837)
Q Consensus 678 ~~~~~~~i~sl~~sp~g~~llags~dg-~I~iwDl~s~~~~~~l~~h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~ 755 (837)
.+........- ..+.+.....++... ...-||.+.+....-. +... ..+....+...... .+.|.-.|.+++
T Consensus 351 ~~~~g~p~~~~-~~~~g~~~~~gg~n~W~~~s~D~~~glvy~pt-Gn~~----pd~~g~~r~~~~n~y~~slvALD~~TG 424 (764)
T TIGR03074 351 AWDPGNPDPTA-PPAPGETYTRNTPNSWSVASYDEKLGLVYLPM-GNQT----PDQWGGDRTPADEKYSSSLVALDATTG 424 (764)
T ss_pred EEecCCCCccc-CCCCCCEeccCCCCccCceEEcCCCCeEEEeC-CCcc----ccccCCccccCcccccceEEEEeCCCC
Confidence 88753221110 011222222122111 3444555554332211 1110 00100000000001 345556666665
Q ss_pred CCceeEEEeecCCCc---------eEEEEEeC-CC---CEEEEEEcCCeEEEEECCCCcEE
Q 003236 756 SKGECIHELSCTGNK---------FHSCVFHP-TF---PSLLVIGCYETLELWNMTENKTL 803 (837)
Q Consensus 756 ~~~~~i~~~~~~~~~---------I~sv~fsp-dg---~~L~sgs~dg~I~IwDl~s~~~~ 803 (837)
+ ..-.+...... ..-+.+.. +| +.++.++.+|.++++|.++++.+
T Consensus 425 k---~~W~~Q~~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~l 482 (764)
T TIGR03074 425 K---ERWVFQTVHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEPI 482 (764)
T ss_pred c---eEEEecccCCccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCCEE
Confidence 2 22222211111 11112222 45 27888999999999999999877
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases. |
| >PHA02713 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.34 E-value=0.23 Score=59.07 Aligned_cols=177 Identities=7% Similarity=-0.049 Sum_probs=86.0
Q ss_pred CeEEEEEeCC------CcEEEEECCCCeeeeEEecCCC-eeEEEEecCCCEEEEEEcCC-----eEEEEECCCCeEE--E
Q 003236 653 EDLLCSCDNN------SEIRYWSINNGSCAGVFKCQSG-ATQMRFQPRLGRILAAAIEN-----YISILDVETQVCR--L 718 (837)
Q Consensus 653 ~~llasgs~D------g~I~vwDl~t~~~i~~~~~~~~-i~sl~~sp~g~~llags~dg-----~I~iwDl~s~~~~--~ 718 (837)
+.+++.|+.+ ..+..||+.+..-...-....+ .......-++..+++|+.++ .+..||..+.+-. .
T Consensus 304 ~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~~~~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~ 383 (557)
T PHA02713 304 NEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSLAVIDDTIYAIGGQNGTNVERTIECYTMGDDKWKMLP 383 (557)
T ss_pred CEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhceeEEEECCEEEEECCcCCCCCCceEEEEECCCCeEEECC
Confidence 4566677643 3477889887653322111111 11122233456666676643 5888998865322 1
Q ss_pred EEcCCCCCEEEEEEcCCCCEEEEEe-CC-----------------------eEEEEEcCCCCCceeEEEeecCCCceEEE
Q 003236 719 KLQGHKNQVHSVCWNTSGEYLASVS-DE-----------------------LVRVWSIGSGSKGECIHELSCTGNKFHSC 774 (837)
Q Consensus 719 ~l~~h~~~V~sl~~spdg~~Lasgs-Dg-----------------------~I~IwDl~s~~~~~~i~~~~~~~~~I~sv 774 (837)
.+.........+. -++++.+.|+ ++ .|..||..+.. ...+..+.. ......
T Consensus 384 ~mp~~r~~~~~~~--~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~-W~~v~~m~~--~r~~~~ 458 (557)
T PHA02713 384 DMPIALSSYGMCV--LDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNI-WETLPNFWT--GTIRPG 458 (557)
T ss_pred CCCcccccccEEE--ECCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCe-EeecCCCCc--ccccCc
Confidence 2111111111222 2566666665 42 46677776541 111111111 111112
Q ss_pred EEeCCCCEEEEEEcC------CeEEEEECCC-CcEEEec---cCCCCeeEEEEeCCCCEEEEEECCC--cEEEe
Q 003236 775 VFHPTFPSLLVIGCY------ETLELWNMTE-NKTLTLS---AHDKLVSSLAASTVNGMVASASHDK--CVKIW 836 (837)
Q Consensus 775 ~fspdg~~L~sgs~d------g~I~IwDl~s-~~~~~l~---~h~~~V~sla~spdg~~LaSgs~DG--~I~IW 836 (837)
+..-++...++||.+ ..|..||..+ .+..... ........+. -++++.++|+.|| .+-.|
T Consensus 459 ~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~~~~--~~~~iyv~Gg~~~~~~~e~y 530 (557)
T PHA02713 459 VVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSALHTIL--HDNTIMMLHCYESYMLQDTF 530 (557)
T ss_pred EEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccccceeEE--ECCEEEEEeeecceeehhhc
Confidence 223345555556543 2478899987 5554222 1222222222 3688899999888 44444
|
|
| >TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118 | Back alignment and domain information |
|---|
Probab=96.31 E-value=1.4 Score=47.21 Aligned_cols=197 Identities=14% Similarity=0.144 Sum_probs=111.7
Q ss_pred eEEEEEcCCCCEEEEEECCCcEEEEeCC-------CCeEEEEecc-----CCCCeEEEEEcCCCC------------EEE
Q 003236 558 VESCHFSPDGKLLATGGHDKKAVLWCTE-------SFTVKSTLEE-----HTQWITDVRFSPSLS------------RLA 613 (837)
Q Consensus 558 V~sl~fSpdg~~Lasgs~Dg~I~VWd~~-------t~~~~~~l~~-----h~~~I~~l~fspdg~------------~La 613 (837)
-+.|+|+|.+.+-++....+...+||.. ...++.++.. .....+.+.|+.... .++
T Consensus 25 ~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~Fi 104 (336)
T TIGR03118 25 AWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSRFL 104 (336)
T ss_pred cceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccceeEE
Confidence 4679999999887877778899999986 1223344432 234677888875322 367
Q ss_pred EEeCCCeEEEEEcCCCCc----eeEEee-ccccce-EEEEEcC--CCCeEEEEEeCCCcEEEEECCCCeeee--EEecC-
Q 003236 614 TSSADRTVRVWDTENPDY----SLRTFT-GHSTTV-MSLDFHP--SKEDLLCSCDNNSEIRYWSINNGSCAG--VFKCQ- 682 (837)
Q Consensus 614 tgs~Dg~I~IWDl~~~~~----~~~~~~-~h~~~V-~sl~fsp--dg~~llasgs~Dg~I~vwDl~t~~~i~--~~~~~- 682 (837)
.+++||+|.-|...-... ....+. .....| ..+++.. .+..+.++--..++|.|||-.=.+... .+...
T Consensus 105 f~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~~~g~F~DP~ 184 (336)
T TIGR03118 105 FVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPPLPGSFIDPA 184 (336)
T ss_pred EEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccccccCCCCccCCC
Confidence 889999999998532221 112222 112333 3455543 345555555567899999865322211 11100
Q ss_pred --C-----Cee------EEEE---ecCCCEEEEEEcCCeEEEEECCCCeEEEEEc--CCCCCEEEEEEcC------CCCE
Q 003236 683 --S-----GAT------QMRF---QPRLGRILAAAIENYISILDVETQVCRLKLQ--GHKNQVHSVCWNT------SGEY 738 (837)
Q Consensus 683 --~-----~i~------sl~~---sp~g~~llags~dg~I~iwDl~s~~~~~~l~--~h~~~V~sl~~sp------dg~~ 738 (837)
. .|. -+.| .++...-+.+..-|.|.+||+. +..+.++. +.-.....|+..| .+.+
T Consensus 185 iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~-G~l~~r~as~g~LNaPWG~a~APa~FG~~sg~l 263 (336)
T TIGR03118 185 LPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLN-GQLLRRVASSGRLNAPWGLAIAPESFGSLSGAL 263 (336)
T ss_pred CCCCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcCC-CcEEEEeccCCcccCCceeeeChhhhCCCCCCe
Confidence 0 011 1111 1122222333344789999987 44555553 2334556677655 3555
Q ss_pred EEEEe-CCeEEEEEcCCC
Q 003236 739 LASVS-DELVRVWSIGSG 755 (837)
Q Consensus 739 Lasgs-Dg~I~IwDl~s~ 755 (837)
|+.-- ||+|.+||..++
T Consensus 264 LVGNFGDG~InaFD~~sG 281 (336)
T TIGR03118 264 LVGNFGDGTINAYDPQSG 281 (336)
T ss_pred EEeecCCceeEEecCCCC
Confidence 55444 999999999887
|
This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus. |
| >PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region | Back alignment and domain information |
|---|
Probab=96.20 E-value=0.27 Score=44.83 Aligned_cols=95 Identities=20% Similarity=0.191 Sum_probs=66.8
Q ss_pred EcCCCCeEEEEEeCCCcEEEEECCCCeeeeEEecCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEcCCCCCE
Q 003236 648 FHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQV 727 (837)
Q Consensus 648 fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~~~~i~sl~~sp~g~~llags~dg~I~iwDl~s~~~~~~l~~h~~~V 727 (837)
|.-+|..-|+.|+.|..|++|+-. +.+..+.....+++++-... ..++.+..+|+|-+|+-. ..+..++. +..+
T Consensus 10 ~d~dg~~eLlvGs~D~~IRvf~~~--e~~~Ei~e~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~~--~RlWRiKS-K~~~ 83 (111)
T PF14783_consen 10 FDGDGENELLVGSDDFEIRVFKGD--EIVAEITETDKVTSLCSLGG-GRFAYALANGTVGVYDRS--QRLWRIKS-KNQV 83 (111)
T ss_pred cCCCCcceEEEecCCcEEEEEeCC--cEEEEEecccceEEEEEcCC-CEEEEEecCCEEEEEeCc--ceeeeecc-CCCe
Confidence 445666778899999999999754 67778887888999888776 779999999999999863 33444443 3346
Q ss_pred EEEEEcC-C--CC-EEEEEe-CCeEE
Q 003236 728 HSVCWNT-S--GE-YLASVS-DELVR 748 (837)
Q Consensus 728 ~sl~~sp-d--g~-~Lasgs-Dg~I~ 748 (837)
+++++.. + |. -|++|- +|.|-
T Consensus 84 ~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 84 TSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred EEEEEEcCCCCCceEEEEEecCCeEE
Confidence 6665543 2 22 455554 77664
|
|
| >COG4257 Vgb Streptogramin lyase [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=96.15 E-value=2 Score=45.31 Aligned_cols=255 Identities=11% Similarity=-0.010 Sum_probs=154.4
Q ss_pred eEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeEEee
Q 003236 558 VESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFT 637 (837)
Q Consensus 558 V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~~~~~~~~~~ 637 (837)
-..|+-.+||..-+++...+.|--.|-.+++....--+....-..|...||+..-++-+.. -|.-.|-++.+.....+.
T Consensus 64 p~dvapapdG~VWft~qg~gaiGhLdP~tGev~~ypLg~Ga~Phgiv~gpdg~~Witd~~~-aI~R~dpkt~evt~f~lp 142 (353)
T COG4257 64 PFDVAPAPDGAVWFTAQGTGAIGHLDPATGEVETYPLGSGASPHGIVVGPDGSAWITDTGL-AIGRLDPKTLEVTRFPLP 142 (353)
T ss_pred ccccccCCCCceEEecCccccceecCCCCCceEEEecCCCCCCceEEECCCCCeeEecCcc-eeEEecCcccceEEeecc
Confidence 4567888999888888888888888888888886665666667788889998876664433 455556555443222221
Q ss_pred --ccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeeEEec--CCCeeEEEEecCCCEEEEEEcCCeEEEEECCC
Q 003236 638 --GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC--QSGATQMRFQPRLGRILAAAIENYISILDVET 713 (837)
Q Consensus 638 --~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~--~~~i~sl~~sp~g~~llags~dg~I~iwDl~s 713 (837)
.-........|.+.|. +-+++. .|.---.|..+ ..+.++.. ....+.|+..|+|...++.-.++.|-..|..+
T Consensus 143 ~~~a~~nlet~vfD~~G~-lWFt~q-~G~yGrLdPa~-~~i~vfpaPqG~gpyGi~atpdGsvwyaslagnaiaridp~~ 219 (353)
T COG4257 143 LEHADANLETAVFDPWGN-LWFTGQ-IGAYGRLDPAR-NVISVFPAPQGGGPYGICATPDGSVWYASLAGNAIARIDPFA 219 (353)
T ss_pred cccCCCcccceeeCCCcc-EEEeec-cccceecCccc-CceeeeccCCCCCCcceEECCCCcEEEEeccccceEEccccc
Confidence 2235677888998876 444554 22111112211 12223322 35577899999999998888889999999877
Q ss_pred CeEEEEE--cCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCC
Q 003236 714 QVCRLKL--QGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYE 790 (837)
Q Consensus 714 ~~~~~~l--~~h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fspdg~~L~sgs~dg 790 (837)
+.....- .........+--+|.+..-++.. .+.+.-||-.... -.-..+......-.++.+...++.-++-...+
T Consensus 220 ~~aev~p~P~~~~~gsRriwsdpig~~wittwg~g~l~rfdPs~~s--W~eypLPgs~arpys~rVD~~grVW~sea~ag 297 (353)
T COG4257 220 GHAEVVPQPNALKAGSRRIWSDPIGRAWITTWGTGSLHRFDPSVTS--WIEYPLPGSKARPYSMRVDRHGRVWLSEADAG 297 (353)
T ss_pred CCcceecCCCcccccccccccCccCcEEEeccCCceeeEeCccccc--ceeeeCCCCCCCcceeeeccCCcEEeeccccC
Confidence 6322111 11123344555667787777766 7788888765542 22234444555556666666666544444556
Q ss_pred eEEEEECCCCcEEEeccCCCCeeEEEEe
Q 003236 791 TLELWNMTENKTLTLSAHDKLVSSLAAS 818 (837)
Q Consensus 791 ~I~IwDl~s~~~~~l~~h~~~V~sla~s 818 (837)
.|.-||-++.....+....-.+..+...
T Consensus 298 ai~rfdpeta~ftv~p~pr~n~gn~ql~ 325 (353)
T COG4257 298 AIGRFDPETARFTVLPIPRPNSGNIQLD 325 (353)
T ss_pred ceeecCcccceEEEecCCCCCCCceecc
Confidence 7777777666655444333333333333
|
|
| >KOG2444 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.11 E-value=0.0065 Score=61.73 Aligned_cols=136 Identities=15% Similarity=0.120 Sum_probs=81.1
Q ss_pred EEEEEcCCeEEEEECCCCeEEEEEc-CCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceE-E
Q 003236 697 ILAAAIENYISILDVETQVCRLKLQ-GHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFH-S 773 (837)
Q Consensus 697 llags~dg~I~iwDl~s~~~~~~l~-~h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~-s 773 (837)
+.+.+.++.|.-++++..+....-. -|.....-+ .-+.-+++|+ +|.|++|...-.. .....+......|. .
T Consensus 33 l~~~sa~~~v~~~~~~k~k~s~rse~~~~e~~~v~---~~~~~~~vG~~dg~v~~~n~n~~g--~~~d~~~s~~e~i~~~ 107 (238)
T KOG2444|consen 33 LRATSADGLVRERKVRKHKESCRSERFIDEGQRVV---TASAKLMVGTSDGAVYVFNWNLEG--AHSDRVCSGEESIDLG 107 (238)
T ss_pred hccccCCcccccchhhhhhhhhhhhhhhhcceeec---ccCceEEeecccceEEEecCCccc--hHHHhhhcccccceec
Confidence 4556667788777776543221111 121111111 2234455665 9999999876321 11111111112222 2
Q ss_pred EEEeCCCCEEEEEEcCCeEEEEECCCCcEE-EeccCC-CCeeEEEEeCCCCEEEEE--ECCCcEEEeC
Q 003236 774 CVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHD-KLVSSLAASTVNGMVASA--SHDKCVKIWK 837 (837)
Q Consensus 774 v~fspdg~~L~sgs~dg~I~IwDl~s~~~~-~l~~h~-~~V~sla~spdg~~LaSg--s~DG~I~IWd 837 (837)
+..-.++.+.++++.++.|+.|++.-++.+ ....|. .++..+..+..+++|+++ |.|..++.|+
T Consensus 108 Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ 175 (238)
T KOG2444|consen 108 IPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGEELIVVGSDEFLKIADTSHDRVLKKWN 175 (238)
T ss_pred cccccccceeEEeccCCceeeeccccCceeeeeccccCCCcceeEEecCCceEEeeccccchhhhhcc
Confidence 223334557889999999999999999988 444565 567777777778888888 8888888886
|
|
| >TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain | Back alignment and domain information |
|---|
Probab=96.10 E-value=2.5 Score=47.60 Aligned_cols=144 Identities=11% Similarity=0.116 Sum_probs=81.0
Q ss_pred CCeEEEEEcCCCCEEEEEE-----------CCC-cEEEEeCCC--Ce--EEEEeccCCCCeEEEEEcCCCCEEEEEeCCC
Q 003236 556 SKVESCHFSPDGKLLATGG-----------HDK-KAVLWCTES--FT--VKSTLEEHTQWITDVRFSPSLSRLATSSADR 619 (837)
Q Consensus 556 ~~V~sl~fSpdg~~Lasgs-----------~Dg-~I~VWd~~t--~~--~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg 619 (837)
.....|+|.++|+++++-. ..+ .|.+++-.+ ++ ....+.........++|.+++ |++++...
T Consensus 14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G--lyV~~~~~ 91 (367)
T TIGR02604 14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG--VYVATPPD 91 (367)
T ss_pred CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC--EEEeCCCe
Confidence 3466899999999877643 223 677775432 32 223443334456889999888 44444444
Q ss_pred eEEEEEcCCC-----C--ceeEEeec----cccceEEEEEcCCCCeEEEEEeC------------------CCcEEEEEC
Q 003236 620 TVRVWDTENP-----D--YSLRTFTG----HSTTVMSLDFHPSKEDLLCSCDN------------------NSEIRYWSI 670 (837)
Q Consensus 620 ~I~IWDl~~~-----~--~~~~~~~~----h~~~V~sl~fspdg~~llasgs~------------------Dg~I~vwDl 670 (837)
.+++.|.+.. + ..+..+.. +......++|.|+|..++..++. .|.|..+|.
T Consensus 92 i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~p 171 (367)
T TIGR02604 92 ILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYNP 171 (367)
T ss_pred EEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEEec
Confidence 3334455321 1 11112222 12447789999998755544421 144666666
Q ss_pred CCCeeeeEEecCCCeeEEEEecCCCEEEEEE
Q 003236 671 NNGSCAGVFKCQSGATQMRFQPRLGRILAAA 701 (837)
Q Consensus 671 ~t~~~i~~~~~~~~i~sl~~sp~g~~llags 701 (837)
..++.............++|++++..+++-.
T Consensus 172 dg~~~e~~a~G~rnp~Gl~~d~~G~l~~tdn 202 (367)
T TIGR02604 172 DGGKLRVVAHGFQNPYGHSVDSWGDVFFCDN 202 (367)
T ss_pred CCCeEEEEecCcCCCccceECCCCCEEEEcc
Confidence 6554332222233457899999877765543
|
All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs. |
| >KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.08 E-value=0.06 Score=65.23 Aligned_cols=98 Identities=12% Similarity=0.157 Sum_probs=70.9
Q ss_pred CCCEEEEEeCCCeEEEEEcCCCCceeEEeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeeEEecCC----
Q 003236 608 SLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQS---- 683 (837)
Q Consensus 608 dg~~Latgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~~~---- 683 (837)
.+..++.|+..|.|...|+..+-.....-..-.++|++++|+.+|. +++.|-.+|.|.+||+..++.++.+...+
T Consensus 98 ~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~-~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t 176 (1206)
T KOG2079|consen 98 VVVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGS-LLLAGLGDGHVTVWDMHRAKILKVITEHGAPVT 176 (1206)
T ss_pred eeeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCc-eeccccCCCcEEEEEccCCcceeeeeecCCccc
Confidence 3557888988999999888764222222233457899999999976 66688889999999999999888887532
Q ss_pred CeeEEEEecCCCEEEEEEcCCeE
Q 003236 684 GATQMRFQPRLGRILAAAIENYI 706 (837)
Q Consensus 684 ~i~sl~~sp~g~~llags~dg~I 706 (837)
++..+.+..++..++++...|.+
T Consensus 177 ~vi~v~~t~~nS~llt~D~~Gsf 199 (1206)
T KOG2079|consen 177 GVIFVGRTSQNSKLLTSDTGGSF 199 (1206)
T ss_pred eEEEEEEeCCCcEEEEccCCCce
Confidence 34455555666667777777753
|
|
| >PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation | Back alignment and domain information |
|---|
Probab=96.02 E-value=1.5 Score=46.57 Aligned_cols=140 Identities=17% Similarity=0.160 Sum_probs=87.1
Q ss_pred CeEEEEEcCCCCEEEEEe---CCCeEEEEEcCCCCceeEEeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEE-CCCCe
Q 003236 599 WITDVRFSPSLSRLATSS---ADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWS-INNGS 674 (837)
Q Consensus 599 ~I~~l~fspdg~~Latgs---~Dg~I~IWDl~~~~~~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwD-l~t~~ 674 (837)
.+.+.++++++..++... ....++++...... ...+. ...+..-.|++++. +.+....+...+++. ...+.
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~--~~~~~--g~~l~~PS~d~~g~-~W~v~~~~~~~~~~~~~~~g~ 99 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPV--RPVLT--GGSLTRPSWDPDGW-VWTVDDGSGGVRVVRDSASGT 99 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCcc--eeecc--CCccccccccCCCC-EEEEEcCCCceEEEEecCCCc
Confidence 688999999999877766 33455665544322 22223 23788889999955 444444455556553 33333
Q ss_pred eee-EEec--C-CCeeEEEEecCCCEEEEEEc---CCeEEEEECC---CC------eEEEEEcCCCCCEEEEEEcCCCCE
Q 003236 675 CAG-VFKC--Q-SGATQMRFQPRLGRILAAAI---ENYISILDVE---TQ------VCRLKLQGHKNQVHSVCWNTSGEY 738 (837)
Q Consensus 675 ~i~-~~~~--~-~~i~sl~~sp~g~~llags~---dg~I~iwDl~---s~------~~~~~l~~h~~~V~sl~~spdg~~ 738 (837)
... .... . ..|..+.++|||.+++.... ++.|.+--+. .+ ..+.........++.+.|.+++.+
T Consensus 100 ~~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~~L 179 (253)
T PF10647_consen 100 GEPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDSTL 179 (253)
T ss_pred ceeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCCCEE
Confidence 221 1111 1 27999999999999887773 4666666433 22 111222233568899999999998
Q ss_pred EEEEe
Q 003236 739 LASVS 743 (837)
Q Consensus 739 Lasgs 743 (837)
++.+.
T Consensus 180 ~V~~~ 184 (253)
T PF10647_consen 180 VVLGR 184 (253)
T ss_pred EEEeC
Confidence 88877
|
It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues. |
| >PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus | Back alignment and domain information |
|---|
Probab=95.88 E-value=1.3 Score=50.29 Aligned_cols=72 Identities=13% Similarity=0.228 Sum_probs=49.4
Q ss_pred CeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEcCCCCCEEE-EEE-cCC----------------CCEEEEEe--
Q 003236 684 GATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHS-VCW-NTS----------------GEYLASVS-- 743 (837)
Q Consensus 684 ~i~sl~~sp~g~~llags~dg~I~iwDl~s~~~~~~l~~h~~~V~s-l~~-spd----------------g~~Lasgs-- 743 (837)
.+.+++.+|.+.+.++...-|.|.++|+.++..++.+++..+.-.. +.. ... ..+|+.-.
T Consensus 309 ~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~LvIyapr 388 (415)
T PF14655_consen 309 EGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALFLVIYAPR 388 (415)
T ss_pred eEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCCCcceEEEEEEecc
Confidence 3678999999877777666699999999999888888775543211 111 010 12344333
Q ss_pred CCeEEEEEcCCC
Q 003236 744 DELVRVWSIGSG 755 (837)
Q Consensus 744 Dg~I~IwDl~s~ 755 (837)
-|.|.||+++.+
T Consensus 389 Rg~lEvW~~~~g 400 (415)
T PF14655_consen 389 RGILEVWSMRQG 400 (415)
T ss_pred CCeEEEEecCCC
Confidence 789999999887
|
|
| >PHA03098 kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=95.73 E-value=0.35 Score=57.31 Aligned_cols=155 Identities=9% Similarity=0.062 Sum_probs=74.1
Q ss_pred CeEEEEEeCC-----CcEEEEECCCCeeeeEEecCCC--eeEEEEecCCCEEEEEEcC------CeEEEEECCCCeEEE-
Q 003236 653 EDLLCSCDNN-----SEIRYWSINNGSCAGVFKCQSG--ATQMRFQPRLGRILAAAIE------NYISILDVETQVCRL- 718 (837)
Q Consensus 653 ~~llasgs~D-----g~I~vwDl~t~~~i~~~~~~~~--i~sl~~sp~g~~llags~d------g~I~iwDl~s~~~~~- 718 (837)
+.+++.|+.+ ..+..||..+.+-...-....+ -.+++ .-++..++.|+.+ +.+..||..+.+-..
T Consensus 343 ~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp~~r~~~~~~-~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~ 421 (534)
T PHA03098 343 NRIYVIGGIYNSISLNTVESWKPGESKWREEPPLIFPRYNPCVV-NVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKG 421 (534)
T ss_pred CEEEEEeCCCCCEecceEEEEcCCCCceeeCCCcCcCCccceEE-EECCEEEEECCcCCCCcccceEEEEeCCCCeeeec
Confidence 4566677654 3577888876553322111111 11222 2344555566532 468899987653221
Q ss_pred -EEcCCCCCEEEEEEcCCCCEEEEEe-CC--------eEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEc
Q 003236 719 -KLQGHKNQVHSVCWNTSGEYLASVS-DE--------LVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGC 788 (837)
Q Consensus 719 -~l~~h~~~V~sl~~spdg~~Lasgs-Dg--------~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fspdg~~L~sgs~ 788 (837)
.+...... .+++. .++.+++.|+ ++ .+.+||..+..- ..+............+.+ ++..+++|+.
T Consensus 422 ~~~p~~r~~-~~~~~-~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W-~~~~~~~~~r~~~~~~~~--~~~iyv~GG~ 496 (534)
T PHA03098 422 SPLPISHYG-GCAIY-HDGKIYVIGGISYIDNIKVYNIVESYNPVTNKW-TELSSLNFPRINASLCIF--NNKIYVVGGD 496 (534)
T ss_pred CCCCccccC-ceEEE-ECCEEEEECCccCCCCCcccceEEEecCCCCce-eeCCCCCcccccceEEEE--CCEEEEEcCC
Confidence 11111111 12222 2455555554 21 388888876521 111111111111122222 5555666654
Q ss_pred C-----CeEEEEECCCCcEEEeccCCCCee
Q 003236 789 Y-----ETLELWNMTENKTLTLSAHDKLVS 813 (837)
Q Consensus 789 d-----g~I~IwDl~s~~~~~l~~h~~~V~ 813 (837)
+ +.|.+||..+.....+......+.
T Consensus 497 ~~~~~~~~v~~yd~~~~~W~~~~~~p~~~~ 526 (534)
T PHA03098 497 KYEYYINEIEVYDDKTNTWTLFCKFPKVIG 526 (534)
T ss_pred cCCcccceeEEEeCCCCEEEecCCCccccc
Confidence 3 478999998887665444333333
|
|
| >TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family | Back alignment and domain information |
|---|
Probab=95.67 E-value=1.3 Score=54.34 Aligned_cols=67 Identities=10% Similarity=0.064 Sum_probs=46.9
Q ss_pred EEEEEeCCCcEEEEECCCCeeeeEEecCCCee-------------EEEEec--CCCEEEEEEc----------CCeEEEE
Q 003236 655 LLCSCDNNSEIRYWSINNGSCAGVFKCQSGAT-------------QMRFQP--RLGRILAAAI----------ENYISIL 709 (837)
Q Consensus 655 llasgs~Dg~I~vwDl~t~~~i~~~~~~~~i~-------------sl~~sp--~g~~llags~----------dg~I~iw 709 (837)
.++.++.|+.|.-.|.++|+.+..+..++.+. .+.-.| .++.+++++. +|.|+-|
T Consensus 262 rV~~~T~Dg~LiALDA~TGk~~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~ 341 (764)
T TIGR03074 262 RIILPTSDARLIALDADTGKLCEDFGNNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAF 341 (764)
T ss_pred EEEEecCCCeEEEEECCCCCEEEEecCCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEE
Confidence 45567779999999999999998775433321 111111 2456666643 5889999
Q ss_pred ECCCCeEEEEEc
Q 003236 710 DVETQVCRLKLQ 721 (837)
Q Consensus 710 Dl~s~~~~~~l~ 721 (837)
|.++++.+..+.
T Consensus 342 Da~TGkl~W~~~ 353 (764)
T TIGR03074 342 DVNTGALVWAWD 353 (764)
T ss_pred ECCCCcEeeEEe
Confidence 999999998876
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases. |
| >PF15390 DUF4613: Domain of unknown function (DUF4613) | Back alignment and domain information |
|---|
Probab=95.64 E-value=0.53 Score=54.25 Aligned_cols=171 Identities=12% Similarity=0.160 Sum_probs=104.1
Q ss_pred cceEEEEEcCCCCeEEEEEe--CCCcEEEEECCCCeeeeEEecCCCeeEEEEecC----CCEEEEEEcCCeEEEEECCC-
Q 003236 641 TTVMSLDFHPSKEDLLCSCD--NNSEIRYWSINNGSCAGVFKCQSGATQMRFQPR----LGRILAAAIENYISILDVET- 713 (837)
Q Consensus 641 ~~V~sl~fspdg~~llasgs--~Dg~I~vwDl~t~~~i~~~~~~~~i~sl~~sp~----g~~llags~dg~I~iwDl~s- 713 (837)
.+|..++|. ||+.++.+.- .+|.+++=| .+.+..| ..|..+.|.|- ...+++.-....|.||-+.-
T Consensus 20 HPvhGlaWT-DGkqVvLT~L~l~~gE~kfGd---s~viGqF---EhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s 92 (671)
T PF15390_consen 20 HPVHGLAWT-DGKQVVLTDLQLHNGEPKFGD---SKVIGQF---EHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPS 92 (671)
T ss_pred ccccceEec-CCCEEEEEeeeeeCCccccCC---ccEeecc---ceeeeeeecCcccCCCCceEEEeccceEEEEEeccC
Confidence 468888887 5666665542 233333322 1223333 56888999885 34688888899999998752
Q ss_pred ----CeEEEEEcC-C--CCC--EEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEE
Q 003236 714 ----QVCRLKLQG-H--KNQ--VHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSL 783 (837)
Q Consensus 714 ----~~~~~~l~~-h--~~~--V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fspdg~~L 783 (837)
.+.+..-.. . .-+ .-.+.|+|....|++-. .+.-.+++++.... .+..-....+.|.|.+|..||..|
T Consensus 93 ~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~s--rVkaDi~~~G~IhCACWT~DG~RL 170 (671)
T PF15390_consen 93 TTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSVLPSVHCDSS--RVKADIKTSGLIHCACWTKDGQRL 170 (671)
T ss_pred ccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCceeEeeeeeeCCc--eEEEeccCCceEEEEEecCcCCEE
Confidence 222222111 1 112 23578999999998877 44445666665432 222222457889999999999988
Q ss_pred EEEEcCC-eEEEEECCCCcEE-----EeccCCCCeeEEEEeCC
Q 003236 784 LVIGCYE-TLELWNMTENKTL-----TLSAHDKLVSSLAASTV 820 (837)
Q Consensus 784 ~sgs~dg-~I~IwDl~s~~~~-----~l~~h~~~V~sla~spd 820 (837)
+++-... .-+|||-...... .+..-.+.|.+|.-.-|
T Consensus 171 VVAvGSsLHSyiWd~~qKtL~~CsfcPVFdv~~~Icsi~AT~d 213 (671)
T PF15390_consen 171 VVAVGSSLHSYIWDSAQKTLHRCSFCPVFDVGGYICSIEATVD 213 (671)
T ss_pred EEEeCCeEEEEEecCchhhhhhCCcceeecCCCceEEEEEecc
Confidence 8776654 6789986544322 33444556766654433
|
|
| >KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.63 E-value=0.097 Score=63.76 Aligned_cols=141 Identities=11% Similarity=0.032 Sum_probs=89.8
Q ss_pred CeEEEEEcCCCCEEEEEE--CCCcEEEEeCCCCeEEE-----------EeccCCCCeEEEEEcCC-CCEEEEEeCCCeEE
Q 003236 557 KVESCHFSPDGKLLATGG--HDKKAVLWCTESFTVKS-----------TLEEHTQWITDVRFSPS-LSRLATSSADRTVR 622 (837)
Q Consensus 557 ~V~sl~fSpdg~~Lasgs--~Dg~I~VWd~~t~~~~~-----------~l~~h~~~I~~l~fspd-g~~Latgs~Dg~I~ 622 (837)
+|..+...+|+...++.. .+-.|.+||+++..... +.......+.++.|.|. ....+++..|+.|+
T Consensus 102 pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~ 181 (1405)
T KOG3630|consen 102 PIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLR 181 (1405)
T ss_pred cceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchh
Confidence 355566666777655443 33478888987543221 11223345678889885 33467777899999
Q ss_pred EEEcCCCCceeEEeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeeEEec-----CCCeeEEEEecCCCEE
Q 003236 623 VWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-----QSGATQMRFQPRLGRI 697 (837)
Q Consensus 623 IWDl~~~~~~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~-----~~~i~sl~~sp~g~~l 697 (837)
|..+......+.. ......++|++|+|.|..++ .|...|++.-|... .+....+.+ ...|.+++|.....++
T Consensus 182 V~~~~~~~~~v~s-~p~t~~~Tav~WSprGKQl~-iG~nnGt~vQy~P~-leik~~ip~Pp~~e~yrvl~v~Wl~t~efl 258 (1405)
T KOG3630|consen 182 VKSTKQLAQNVTS-FPVTNSQTAVLWSPRGKQLF-IGRNNGTEVQYEPS-LEIKSEIPEPPVEENYRVLSVTWLSTQEFL 258 (1405)
T ss_pred hhhhhhhhhhhcc-cCcccceeeEEeccccceee-EecCCCeEEEeecc-cceeecccCCCcCCCcceeEEEEecceeEE
Confidence 9887654432333 23557789999999988665 78888999888665 332232222 4678999998775555
Q ss_pred EEE
Q 003236 698 LAA 700 (837)
Q Consensus 698 lag 700 (837)
++-
T Consensus 259 vvy 261 (1405)
T KOG3630|consen 259 VVY 261 (1405)
T ss_pred EEe
Confidence 543
|
|
| >PLN02153 epithiospecifier protein | Back alignment and domain information |
|---|
Probab=95.61 E-value=1.2 Score=49.36 Aligned_cols=175 Identities=7% Similarity=-0.032 Sum_probs=80.4
Q ss_pred CeEEEEEeCC-----CcEEEEECCCCeeeeEEec-----CC-CeeEEEEecCCCEEEEEEcC-----------CeEEEEE
Q 003236 653 EDLLCSCDNN-----SEIRYWSINNGSCAGVFKC-----QS-GATQMRFQPRLGRILAAAIE-----------NYISILD 710 (837)
Q Consensus 653 ~~llasgs~D-----g~I~vwDl~t~~~i~~~~~-----~~-~i~sl~~sp~g~~llags~d-----------g~I~iwD 710 (837)
+.+++.|+.+ ..+.+||+.+.+-...-.. .. .....+...+++.++.|+.+ ..|.+||
T Consensus 86 ~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~v~~yd 165 (341)
T PLN02153 86 TKLYIFGGRDEKREFSDFYSYDTVKNEWTFLTKLDEEGGPEARTFHSMASDENHVYVFGGVSKGGLMKTPERFRTIEAYN 165 (341)
T ss_pred CEEEEECCCCCCCccCcEEEEECCCCEEEEeccCCCCCCCCCceeeEEEEECCEEEEECCccCCCccCCCcccceEEEEE
Confidence 4566666643 3578899887654322111 11 11122223344556666643 2477889
Q ss_pred CCCCeEEEEEcCC----C-CCEEEEEEcCCCCEEEEEe-C-------------CeEEEEEcCCCCCceeEEEeec-CCCc
Q 003236 711 VETQVCRLKLQGH----K-NQVHSVCWNTSGEYLASVS-D-------------ELVRVWSIGSGSKGECIHELSC-TGNK 770 (837)
Q Consensus 711 l~s~~~~~~l~~h----~-~~V~sl~~spdg~~Lasgs-D-------------g~I~IwDl~s~~~~~~i~~~~~-~~~~ 770 (837)
.++.+=.. +... . ..-.+++. -++++++.++ + ..|.+||+.+.. ...+..... ....
T Consensus 166 ~~~~~W~~-l~~~~~~~~~r~~~~~~~-~~~~iyv~GG~~~~~~~gG~~~~~~~~v~~yd~~~~~-W~~~~~~g~~P~~r 242 (341)
T PLN02153 166 IADGKWVQ-LPDPGENFEKRGGAGFAV-VQGKIWVVYGFATSILPGGKSDYESNAVQFFDPASGK-WTEVETTGAKPSAR 242 (341)
T ss_pred CCCCeEee-CCCCCCCCCCCCcceEEE-ECCeEEEEeccccccccCCccceecCceEEEEcCCCc-EEeccccCCCCCCc
Confidence 87653221 1111 0 11112222 2455555433 2 358888887652 112211100 1111
Q ss_pred eEEEEEeCCCCEEEEEEcC--------------CeEEEEECCCCcEEEeccCCC------C--eeEEEEeCCCCEEEEEE
Q 003236 771 FHSCVFHPTFPSLLVIGCY--------------ETLELWNMTENKTLTLSAHDK------L--VSSLAASTVNGMVASAS 828 (837)
Q Consensus 771 I~sv~fspdg~~L~sgs~d--------------g~I~IwDl~s~~~~~l~~h~~------~--V~sla~spdg~~LaSgs 828 (837)
....+..-++..++.|+.. +.|+.||..+.....+..... . ..++.+..++++++.|+
T Consensus 243 ~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~n~v~~~d~~~~~W~~~~~~~~~~~pr~~~~~~~~~v~~~~~~~~~gG 322 (341)
T PLN02153 243 SVFAHAVVGKYIIIFGGEVWPDLKGHLGPGTLSNEGYALDTETLVWEKLGECGEPAMPRGWTAYTTATVYGKNGLLMHGG 322 (341)
T ss_pred ceeeeEEECCEEEEECcccCCccccccccccccccEEEEEcCccEEEeccCCCCCCCCCccccccccccCCcceEEEEcC
Confidence 1111222345566666641 268889988776654431111 1 12333444456777777
Q ss_pred CC
Q 003236 829 HD 830 (837)
Q Consensus 829 ~D 830 (837)
.+
T Consensus 323 ~~ 324 (341)
T PLN02153 323 KL 324 (341)
T ss_pred cC
Confidence 64
|
|
| >KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.49 E-value=0.1 Score=63.55 Aligned_cols=144 Identities=13% Similarity=0.078 Sum_probs=94.8
Q ss_pred CeEEEEEcCCCCEEEEE--eCCCeEEEEEcCCCCcee----EEee------ccccceEEEEEcCCCCeEEEEEeCCCcEE
Q 003236 599 WITDVRFSPSLSRLATS--SADRTVRVWDTENPDYSL----RTFT------GHSTTVMSLDFHPSKEDLLCSCDNNSEIR 666 (837)
Q Consensus 599 ~I~~l~fspdg~~Latg--s~Dg~I~IWDl~~~~~~~----~~~~------~h~~~V~sl~fspdg~~llasgs~Dg~I~ 666 (837)
.|..+...+|+...++. +.+-.|..||+++-.... ..+. .....+.++.|.|.=....+.+..|+.|+
T Consensus 102 pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~ 181 (1405)
T KOG3630|consen 102 PIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLR 181 (1405)
T ss_pred cceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchh
Confidence 45555556676554433 344588999987532111 1111 12244567889887665667778899999
Q ss_pred EEECCCCe-eeeEEecCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEcC----CCCCEEEEEEcCCCCEEEE
Q 003236 667 YWSINNGS-CAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQG----HKNQVHSVCWNTSGEYLAS 741 (837)
Q Consensus 667 vwDl~t~~-~i~~~~~~~~i~sl~~sp~g~~llags~dg~I~iwDl~s~~~~~~l~~----h~~~V~sl~~spdg~~Las 741 (837)
+..+.... .+..+......++++|+|.|+.+++|...|++.-|...-. ....+.+ ....|.||+|...-.++++
T Consensus 182 V~~~~~~~~~v~s~p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~le-ik~~ip~Pp~~e~yrvl~v~Wl~t~eflvv 260 (1405)
T KOG3630|consen 182 VKSTKQLAQNVTSFPVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPSLE-IKSEIPEPPVEENYRVLSVTWLSTQEFLVV 260 (1405)
T ss_pred hhhhhhhhhhhcccCcccceeeEEeccccceeeEecCCCeEEEeecccc-eeecccCCCcCCCcceeEEEEecceeEEEE
Confidence 88776432 2333455677899999999999999999999998876532 2222221 2468999999988887776
Q ss_pred Ee
Q 003236 742 VS 743 (837)
Q Consensus 742 gs 743 (837)
-+
T Consensus 261 y~ 262 (1405)
T KOG3630|consen 261 YG 262 (1405)
T ss_pred ec
Confidence 44
|
|
| >COG4257 Vgb Streptogramin lyase [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=95.46 E-value=2.5 Score=44.57 Aligned_cols=211 Identities=10% Similarity=0.053 Sum_probs=130.2
Q ss_pred CeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeEEeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeeE
Q 003236 599 WITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGV 678 (837)
Q Consensus 599 ~I~~l~fspdg~~Latgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~ 678 (837)
.-..|+-.+||..-+++...+.|--.|..+++. ...-.+....-..|...||+...++-. ..-|.-+|-++.+..+.
T Consensus 63 ap~dvapapdG~VWft~qg~gaiGhLdP~tGev-~~ypLg~Ga~Phgiv~gpdg~~Witd~--~~aI~R~dpkt~evt~f 139 (353)
T COG4257 63 APFDVAPAPDGAVWFTAQGTGAIGHLDPATGEV-ETYPLGSGASPHGIVVGPDGSAWITDT--GLAIGRLDPKTLEVTRF 139 (353)
T ss_pred CccccccCCCCceEEecCccccceecCCCCCce-EEEecCCCCCCceEEECCCCCeeEecC--cceeEEecCcccceEEe
Confidence 345677788998889988888888888888774 333344555667788888887555222 22566666665543321
Q ss_pred -Ee---cCCCeeEEEEecCCCEEEEEEcC---------CeEEEEECCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEe-C
Q 003236 679 -FK---CQSGATQMRFQPRLGRILAAAIE---------NYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-D 744 (837)
Q Consensus 679 -~~---~~~~i~sl~~sp~g~~llags~d---------g~I~iwDl~s~~~~~~l~~h~~~V~sl~~spdg~~Lasgs-D 744 (837)
+. .........|.+.|...+++... +.|++|+.- .....+.||..|||...++.- +
T Consensus 140 ~lp~~~a~~nlet~vfD~~G~lWFt~q~G~yGrLdPa~~~i~vfpaP----------qG~gpyGi~atpdGsvwyaslag 209 (353)
T COG4257 140 PLPLEHADANLETAVFDPWGNLWFTGQIGAYGRLDPARNVISVFPAP----------QGGGPYGICATPDGSVWYASLAG 209 (353)
T ss_pred ecccccCCCcccceeeCCCccEEEeeccccceecCcccCceeeeccC----------CCCCCcceEECCCCcEEEEeccc
Confidence 11 13457788999998888877632 234444432 234567789999999888766 7
Q ss_pred CeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE--EeccCCCCeeEEEEeCCCC
Q 003236 745 ELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL--TLSAHDKLVSSLAASTVNG 822 (837)
Q Consensus 745 g~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fspdg~~L~sgs~dg~I~IwDl~s~~~~--~l~~h~~~V~sla~spdg~ 822 (837)
+.|-..|..++.. +.+..-.........+-.+|.+..-++....+.+..||-...... .+.+....-.++.+...++
T Consensus 210 naiaridp~~~~a-ev~p~P~~~~~gsRriwsdpig~~wittwg~g~l~rfdPs~~sW~eypLPgs~arpys~rVD~~gr 288 (353)
T COG4257 210 NAIARIDPFAGHA-EVVPQPNALKAGSRRIWSDPIGRAWITTWGTGSLHRFDPSVTSWIEYPLPGSKARPYSMRVDRHGR 288 (353)
T ss_pred cceEEcccccCCc-ceecCCCcccccccccccCccCcEEEeccCCceeeEeCcccccceeeeCCCCCCCcceeeeccCCc
Confidence 7777777766522 222222222334455666777777777667778888887655443 3334444444444444443
Q ss_pred E
Q 003236 823 M 823 (837)
Q Consensus 823 ~ 823 (837)
.
T Consensus 289 V 289 (353)
T COG4257 289 V 289 (353)
T ss_pred E
Confidence 3
|
|
| >KOG2377 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.43 E-value=1.2 Score=49.69 Aligned_cols=120 Identities=17% Similarity=0.198 Sum_probs=84.8
Q ss_pred CCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEE----EEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCC
Q 003236 554 STSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVK----STLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENP 629 (837)
Q Consensus 554 H~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~~----~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~~ 629 (837)
..++|.++.||+|.+.||+--.|++|.+++....+.. .+.+..+..|...+|+.+ .-+|..+..| +-+|-+...
T Consensus 65 d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k~~~IlGF~W~~s-~e~A~i~~~G-~e~y~v~pe 142 (657)
T KOG2377|consen 65 DKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQECKTKNANILGFCWTSS-TEIAFITDQG-IEFYQVLPE 142 (657)
T ss_pred CCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHHHhccCcceeEEEEEecC-eeEEEEecCC-eEEEEEchh
Confidence 4568999999999999999999999999987432222 233444566999999866 5566665555 777877766
Q ss_pred CceeEEeeccccceEEEEEcCCCCeEEEEEe-CCCcEEEEECCCCee
Q 003236 630 DYSLRTFTGHSTTVMSLDFHPSKEDLLCSCD-NNSEIRYWSINNGSC 675 (837)
Q Consensus 630 ~~~~~~~~~h~~~V~sl~fspdg~~llasgs-~Dg~I~vwDl~t~~~ 675 (837)
+..++..+.|...|....|+++...++.+.+ ..+++.=+-++++..
T Consensus 143 krslRlVks~~~nvnWy~yc~et~v~LL~t~~~~n~lnpf~~~~~~v 189 (657)
T KOG2377|consen 143 KRSLRLVKSHNLNVNWYMYCPETAVILLSTTVLENVLNPFHFRAGTM 189 (657)
T ss_pred hhhhhhhhhcccCccEEEEccccceEeeeccccccccccEEEeecee
Confidence 6667778888999999999998765554444 344444444554433
|
|
| >KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.42 E-value=0.23 Score=60.55 Aligned_cols=101 Identities=20% Similarity=0.237 Sum_probs=71.1
Q ss_pred CCCEEEEEECCCcEEEEeCCCC-eEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeEEeeccccceE
Q 003236 566 DGKLLATGGHDKKAVLWCTESF-TVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVM 644 (837)
Q Consensus 566 dg~~Lasgs~Dg~I~VWd~~t~-~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~ 644 (837)
-+.+++.|+..|.|...|.... .....=..-.++|++++|+.+|+.++.|-.+|.|.+||+..++. ++.+..|..++.
T Consensus 98 ~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~-l~~i~e~~ap~t 176 (1206)
T KOG2079|consen 98 VVVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKI-LKVITEHGAPVT 176 (1206)
T ss_pred eeeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcc-eeeeeecCCccc
Confidence 3557888998999998887642 22122233457899999999999999999999999999998653 666666665555
Q ss_pred EEE---EcCCCCeEEEEEeCCCcEEEEEC
Q 003236 645 SLD---FHPSKEDLLCSCDNNSEIRYWSI 670 (837)
Q Consensus 645 sl~---fspdg~~llasgs~Dg~I~vwDl 670 (837)
++- +..++. .+++++..|. +|.+
T Consensus 177 ~vi~v~~t~~nS-~llt~D~~Gs--f~~l 202 (1206)
T KOG2079|consen 177 GVIFVGRTSQNS-KLLTSDTGGS--FWKL 202 (1206)
T ss_pred eEEEEEEeCCCc-EEEEccCCCc--eEEE
Confidence 443 333434 5667776675 4543
|
|
| >TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain | Back alignment and domain information |
|---|
Probab=95.34 E-value=0.49 Score=53.23 Aligned_cols=147 Identities=11% Similarity=0.036 Sum_probs=82.9
Q ss_pred CCeeEEEEecCCCEEEEEE-----------cCC-eEEEEECCC--Ce--EEEEEcCCCCCEEEEEEcCCCCEEEEEeCCe
Q 003236 683 SGATQMRFQPRLGRILAAA-----------IEN-YISILDVET--QV--CRLKLQGHKNQVHSVCWNTSGEYLASVSDEL 746 (837)
Q Consensus 683 ~~i~sl~~sp~g~~llags-----------~dg-~I~iwDl~s--~~--~~~~l~~h~~~V~sl~~spdg~~LasgsDg~ 746 (837)
.....++|.++|+.+++-. ..+ .|.+++-.+ ++ ....+.......+.+++.+++ ++++.....
T Consensus 14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G-lyV~~~~~i 92 (367)
T TIGR02604 14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG-VYVATPPDI 92 (367)
T ss_pred CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC-EEEeCCCeE
Confidence 3456777777776555532 123 677776543 22 233443344466889999988 444433443
Q ss_pred EEEEEcCCCC----Cce-eEEEeecC----CCceEEEEEeCCCCEEEEEEcC-------------------CeEEEEECC
Q 003236 747 VRVWSIGSGS----KGE-CIHELSCT----GNKFHSCVFHPTFPSLLVIGCY-------------------ETLELWNMT 798 (837)
Q Consensus 747 I~IwDl~s~~----~~~-~i~~~~~~----~~~I~sv~fspdg~~L~sgs~d-------------------g~I~IwDl~ 798 (837)
+++.|..... ..+ .+..+... ......++|.|||...++.+.. +.|.-+|..
T Consensus 93 ~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~pd 172 (367)
T TIGR02604 93 LFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYNPD 172 (367)
T ss_pred EEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEEecC
Confidence 3344543221 112 22223222 3447789999999865554421 356666666
Q ss_pred CCcEEEeccCCCCeeEEEEeCCCCEEEEEECC
Q 003236 799 ENKTLTLSAHDKLVSSLAASTVNGMVASASHD 830 (837)
Q Consensus 799 s~~~~~l~~h~~~V~sla~spdg~~LaSgs~D 830 (837)
+++...+...-.....++|+++|.++++-..+
T Consensus 173 g~~~e~~a~G~rnp~Gl~~d~~G~l~~tdn~~ 204 (367)
T TIGR02604 173 GGKLRVVAHGFQNPYGHSVDSWGDVFFCDNDD 204 (367)
T ss_pred CCeEEEEecCcCCCccceECCCCCEEEEccCC
Confidence 65554443333456789999999888765433
|
All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs. |
| >PHA03098 kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=95.32 E-value=0.52 Score=55.83 Aligned_cols=183 Identities=9% Similarity=-0.002 Sum_probs=87.8
Q ss_pred CCCEEEEEECCC------cEEEEeCCCCeEEEEe--ccCCCCeEEEEEcCCCCEEEEEeCC-----CeEEEEEcCCCCce
Q 003236 566 DGKLLATGGHDK------KAVLWCTESFTVKSTL--EEHTQWITDVRFSPSLSRLATSSAD-----RTVRVWDTENPDYS 632 (837)
Q Consensus 566 dg~~Lasgs~Dg------~I~VWd~~t~~~~~~l--~~h~~~I~~l~fspdg~~Latgs~D-----g~I~IWDl~~~~~~ 632 (837)
++.+++.||.++ .+..||..+.+....- .........+.+ ++.+++.|+.+ ..+.+||..+....
T Consensus 294 ~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~~~--~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~ 371 (534)
T PHA03098 294 NNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVTVF--NNRIYVIGGIYNSISLNTVESWKPGESKWR 371 (534)
T ss_pred CCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccceEEEE--CCEEEEEeCCCCCEecceEEEEcCCCCcee
Confidence 556677776542 5778887765543221 111112222222 56777777765 35778888776542
Q ss_pred eEEeeccccceEEEEEcCCCCeEEEEEeCC------CcEEEEECCCCeeeeEEecCCC--eeEEEEecCCCEEEEEEcC-
Q 003236 633 LRTFTGHSTTVMSLDFHPSKEDLLCSCDNN------SEIRYWSINNGSCAGVFKCQSG--ATQMRFQPRLGRILAAAIE- 703 (837)
Q Consensus 633 ~~~~~~h~~~V~sl~fspdg~~llasgs~D------g~I~vwDl~t~~~i~~~~~~~~--i~sl~~sp~g~~llags~d- 703 (837)
...-..+...-.+++.. ++.+++.|+.+ ..+..||+.+.+-...-....+ ..++ ...++..+++|+.+
T Consensus 372 ~~~~lp~~r~~~~~~~~--~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~-~~~~~~iyv~GG~~~ 448 (534)
T PHA03098 372 EEPPLIFPRYNPCVVNV--NNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYGGCA-IYHDGKIYVIGGISY 448 (534)
T ss_pred eCCCcCcCCccceEEEE--CCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccCceE-EEECCEEEEECCccC
Confidence 21111111111122222 24566666632 4588899887654332221111 1122 22344555555542
Q ss_pred -------CeEEEEECCCCeEEEE--EcCCCCCEEEEEEcCCCCEEEEEe-C-----CeEEEEEcCCC
Q 003236 704 -------NYISILDVETQVCRLK--LQGHKNQVHSVCWNTSGEYLASVS-D-----ELVRVWSIGSG 755 (837)
Q Consensus 704 -------g~I~iwDl~s~~~~~~--l~~h~~~V~sl~~spdg~~Lasgs-D-----g~I~IwDl~s~ 755 (837)
..+.+||..+.+-... +.........+.+ ++++++.|+ + +.|.+||..+.
T Consensus 449 ~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~ 513 (534)
T PHA03098 449 IDNIKVYNIVESYNPVTNKWTELSSLNFPRINASLCIF--NNKIYVVGGDKYEYYINEIEVYDDKTN 513 (534)
T ss_pred CCCCcccceEEEecCCCCceeeCCCCCcccccceEEEE--CCEEEEEcCCcCCcccceeEEEeCCCC
Confidence 2388899887542221 1111111112222 566666665 2 26777777654
|
|
| >PRK13684 Ycf48-like protein; Provisional | Back alignment and domain information |
|---|
Probab=95.24 E-value=1.8 Score=48.09 Aligned_cols=150 Identities=11% Similarity=0.088 Sum_probs=86.8
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCeEEE-EEcCCCCceeEEeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCee
Q 003236 597 TQWITDVRFSPSLSRLATSSADRTVRV-WDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSC 675 (837)
Q Consensus 597 ~~~I~~l~fspdg~~Latgs~Dg~I~I-WDl~~~~~~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~ 675 (837)
...+.++.+.+++.+++++ ..|.+.. +|-..... ......-...++++.+.+++.. ++.+ ..|.+++=....+..
T Consensus 172 ~g~~~~i~~~~~g~~v~~g-~~G~i~~s~~~gg~tW-~~~~~~~~~~l~~i~~~~~g~~-~~vg-~~G~~~~~s~d~G~s 247 (334)
T PRK13684 172 AGVVRNLRRSPDGKYVAVS-SRGNFYSTWEPGQTAW-TPHQRNSSRRLQSMGFQPDGNL-WMLA-RGGQIRFNDPDDLES 247 (334)
T ss_pred cceEEEEEECCCCeEEEEe-CCceEEEEcCCCCCeE-EEeeCCCcccceeeeEcCCCCE-EEEe-cCCEEEEccCCCCCc
Confidence 4578999999988766665 4554443 22221111 1122234567899999998764 4344 467665333444433
Q ss_pred eeEEec-----CCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEE---cCCCCCEEEEEEcCCCCEEEEEeCCeE
Q 003236 676 AGVFKC-----QSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKL---QGHKNQVHSVCWNTSGEYLASVSDELV 747 (837)
Q Consensus 676 i~~~~~-----~~~i~sl~~sp~g~~llags~dg~I~iwDl~s~~~~~~l---~~h~~~V~sl~~spdg~~LasgsDg~I 747 (837)
-..... ...+..+.+.+++. +++++.+|.|.. ....++.-... ..-....+.+.|..+++.+++|..|.|
T Consensus 248 W~~~~~~~~~~~~~l~~v~~~~~~~-~~~~G~~G~v~~-S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~G~i 325 (334)
T PRK13684 248 WSKPIIPEITNGYGYLDLAYRTPGE-IWAGGGNGTLLV-SKDGGKTWEKDPVGEEVPSNFYKIVFLDPEKGFVLGQRGVL 325 (334)
T ss_pred cccccCCccccccceeeEEEcCCCC-EEEEcCCCeEEE-eCCCCCCCeECCcCCCCCcceEEEEEeCCCceEEECCCceE
Confidence 222121 23467788888655 555666676553 33333322222 222346788888888888888889988
Q ss_pred EEEEc
Q 003236 748 RVWSI 752 (837)
Q Consensus 748 ~IwDl 752 (837)
..|+-
T Consensus 326 l~~~~ 330 (334)
T PRK13684 326 LRYVG 330 (334)
T ss_pred EEecC
Confidence 87763
|
|
| >COG1520 FOG: WD40-like repeat [Function unknown] | Back alignment and domain information |
|---|
Probab=95.19 E-value=7 Score=43.93 Aligned_cols=187 Identities=5% Similarity=-0.046 Sum_probs=100.4
Q ss_pred CEEEEEeCCCeEEEEEcCCCCceeEEeecc-ccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeeEEecCC--Cee
Q 003236 610 SRLATSSADRTVRVWDTENPDYSLRTFTGH-STTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQS--GAT 686 (837)
Q Consensus 610 ~~Latgs~Dg~I~IWDl~~~~~~~~~~~~h-~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~~~--~i~ 686 (837)
..++++..+|.|.-.|.+++...-...... ...+.+-.+..+|. ++.++.++.++++|.++|+.+..+.... .+.
T Consensus 69 g~v~~~~~~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~~G~--i~~g~~~g~~y~ld~~~G~~~W~~~~~~~~~~~ 146 (370)
T COG1520 69 GTVYVGTRDGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGSDGK--IYVGSWDGKLYALDASTGTLVWSRNVGGSPYYA 146 (370)
T ss_pred CeEEEecCCCcEEEEeCCCCcEEecccCcCcceeccCceEEeCCe--EEEecccceEEEEECCCCcEEEEEecCCCeEEe
Confidence 345666788888888888766421111111 12233323333554 4567778899999999999999888766 111
Q ss_pred EEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEcCCC---CCEEEEEEcCCCCEEEEEe--CCeEEEEEcCCCCCceeE
Q 003236 687 QMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHK---NQVHSVCWNTSGEYLASVS--DELVRVWSIGSGSKGECI 761 (837)
Q Consensus 687 sl~~sp~g~~llags~dg~I~iwDl~s~~~~~~l~~h~---~~V~sl~~spdg~~Lasgs--Dg~I~IwDl~s~~~~~~i 761 (837)
...+. ....++.++.++.+...|..+++.+....... ..+..--...++..++... ++.+.-+|..++. .+
T Consensus 147 ~~~v~-~~~~v~~~s~~g~~~al~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~vy~~~~~~~~~~~a~~~~~G~---~~ 222 (370)
T COG1520 147 SPPVV-GDGTVYVGTDDGHLYALNADTGTLKWTYETPAPLSLSIYGSPAIASGTVYVGSDGYDGILYALNAEDGT---LK 222 (370)
T ss_pred cCcEE-cCcEEEEecCCCeEEEEEccCCcEEEEEecCCccccccccCceeecceEEEecCCCcceEEEEEccCCc---Ee
Confidence 21222 23445555578999999999988877654322 1111111122333333333 3356666665552 22
Q ss_pred EEee----cCCC------ceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE
Q 003236 762 HELS----CTGN------KFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL 803 (837)
Q Consensus 762 ~~~~----~~~~------~I~sv~fspdg~~L~sgs~dg~I~IwDl~s~~~~ 803 (837)
...+ .... .+..-...-++ .++.++.++.+..+|..+++.+
T Consensus 223 w~~~~~~~~~~~~~~~~~~~~~~~v~v~~-~~~~~~~~g~~~~l~~~~G~~~ 273 (370)
T COG1520 223 WSQKVSQTIGRTAISTTPAVDGGPVYVDG-GVYAGSYGGKLLCLDADTGELI 273 (370)
T ss_pred eeeeeecccCcccccccccccCceEEECC-cEEEEecCCeEEEEEcCCCceE
Confidence 2211 0000 01111111122 2466677777888888888877
|
|
| >PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I [] | Back alignment and domain information |
|---|
Probab=95.08 E-value=9.1 Score=47.55 Aligned_cols=177 Identities=16% Similarity=0.196 Sum_probs=97.1
Q ss_pred cCCCCeEEEEEc---C----CCCEEEEEeCCCeEEEEEcCCCC--------------ceeEEeec---cccceEEEEEcC
Q 003236 595 EHTQWITDVRFS---P----SLSRLATSSADRTVRVWDTENPD--------------YSLRTFTG---HSTTVMSLDFHP 650 (837)
Q Consensus 595 ~h~~~I~~l~fs---p----dg~~Latgs~Dg~I~IWDl~~~~--------------~~~~~~~~---h~~~V~sl~fsp 650 (837)
....+|..|+|. . ..++|++= ....+.|+...-.+ .++..+.. ...+..+++|+|
T Consensus 77 ~~~~PI~qI~fa~~~~~~~~~~~~l~Vr-t~~st~I~~p~~~~~~~~~~~~~s~i~~~~l~~i~~~~tgg~~~aDv~FnP 155 (765)
T PF10214_consen 77 DDGSPIKQIKFATLSESFDEKSRWLAVR-TETSTTILRPEYHRVISSIRSRPSRIDPNPLLTISSSDTGGFPHADVAFNP 155 (765)
T ss_pred CCCCCeeEEEecccccccCCcCcEEEEE-cCCEEEEEEcccccccccccCCccccccceeEEechhhcCCCccceEEecc
Confidence 456788888887 2 12355544 45566777622111 01222221 123566788888
Q ss_pred CCCeEEEEEeCCCcEEEEECCCCeeeeEEecCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEcCCCCCEEEE
Q 003236 651 SKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSV 730 (837)
Q Consensus 651 dg~~llasgs~Dg~I~vwDl~t~~~i~~~~~~~~i~sl~~sp~g~~llags~dg~I~iwDl~s~~~~~~l~~h~~~V~sl 730 (837)
....-||..+..|...|||+....... .... -+.....|.| ++|... .+....|
T Consensus 156 ~~~~q~AiVD~~G~Wsvw~i~~~~~~~-----~~~~----------~~~~~~~gsi-~~d~~e----------~s~w~rI 209 (765)
T PF10214_consen 156 WDQRQFAIVDEKGNWSVWDIKGRPKRK-----SSNL----------RLSRNISGSI-IFDPEE----------LSNWKRI 209 (765)
T ss_pred CccceEEEEeccCcEEEEEeccccccC-----Ccce----------eeccCCCccc-cCCCcc----------cCcceee
Confidence 776677788888888888882111100 0000 1111112333 233221 1445678
Q ss_pred EEcCCCCEEEEEeCCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCC
Q 003236 731 CWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTE 799 (837)
Q Consensus 731 ~~spdg~~LasgsDg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fspdg~~L~sgs~dg~I~IwDl~s 799 (837)
.|.++...|++++...+.++|+.+......+ ........|..+.-+++....+..-....|..+|+..
T Consensus 210 ~W~~~~~~lLv~~r~~l~~~d~~~~~~~~~l-~~~~~~~~IlDv~~~~~~~~~~FiLTs~eiiw~~~~~ 277 (765)
T PF10214_consen 210 LWVSDSNRLLVCNRSKLMLIDFESNWQTEYL-VTAKTWSWILDVKRSPDNPSHVFILTSKEIIWLDVKS 277 (765)
T ss_pred EecCCCCEEEEEcCCceEEEECCCCCccchh-ccCCChhheeeEEecCCccceEEEEecCeEEEEEccC
Confidence 8988888899999888999999877432221 2223456688888777732222222335666667665
|
These proteins are found in fungi. |
| >PLN00033 photosystem II stability/assembly factor; Provisional | Back alignment and domain information |
|---|
Probab=95.03 E-value=8.2 Score=43.88 Aligned_cols=110 Identities=12% Similarity=0.007 Sum_probs=66.1
Q ss_pred CCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCe-----EEEEEcC--CCCCEEEEEEcCCCCEEEEEeCCeEEEEEcCC
Q 003236 682 QSGATQMRFQPRLGRILAAAIENYISILDVETQV-----CRLKLQG--HKNQVHSVCWNTSGEYLASVSDELVRVWSIGS 754 (837)
Q Consensus 682 ~~~i~sl~~sp~g~~llags~dg~I~iwDl~s~~-----~~~~l~~--h~~~V~sl~~spdg~~LasgsDg~I~IwDl~s 754 (837)
...+..+.+.+++..++++ ..|.+..- ...+. ....+.. ....+.++.|.+++..+++|..|.|.+.. ..
T Consensus 280 ~~~l~~v~~~~dg~l~l~g-~~G~l~~S-~d~G~~~~~~~f~~~~~~~~~~~l~~v~~~~d~~~~a~G~~G~v~~s~-D~ 356 (398)
T PLN00033 280 ARRIQNMGWRADGGLWLLT-RGGGLYVS-KGTGLTEEDFDFEEADIKSRGFGILDVGYRSKKEAWAAGGSGILLRST-DG 356 (398)
T ss_pred ccceeeeeEcCCCCEEEEe-CCceEEEe-cCCCCcccccceeecccCCCCcceEEEEEcCCCcEEEEECCCcEEEeC-CC
Confidence 4567888898887766555 55655443 22332 1222221 12358899999999998888888666553 44
Q ss_pred CCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEE
Q 003236 755 GSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELW 795 (837)
Q Consensus 755 ~~~~~~i~~~~~~~~~I~sv~fspdg~~L~sgs~dg~I~Iw 795 (837)
++..........-...++.+.|.++++ .++.+.+|.|.-|
T Consensus 357 G~tW~~~~~~~~~~~~ly~v~f~~~~~-g~~~G~~G~il~~ 396 (398)
T PLN00033 357 GKSWKRDKGADNIAANLYSVKFFDDKK-GFVLGNDGVLLRY 396 (398)
T ss_pred CcceeEccccCCCCcceeEEEEcCCCc-eEEEeCCcEEEEe
Confidence 432222222222345678889877755 6667777776654
|
|
| >KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=94.76 E-value=15 Score=45.53 Aligned_cols=165 Identities=12% Similarity=0.094 Sum_probs=86.2
Q ss_pred EEEEECCCCeeeeEEecCC-----CeeEEEEecCCCE--EEEEEc-----------CCeEEEEECCC-CeEEEEEc--CC
Q 003236 665 IRYWSINNGSCAGVFKCQS-----GATQMRFQPRLGR--ILAAAI-----------ENYISILDVET-QVCRLKLQ--GH 723 (837)
Q Consensus 665 I~vwDl~t~~~i~~~~~~~-----~i~sl~~sp~g~~--llags~-----------dg~I~iwDl~s-~~~~~~l~--~h 723 (837)
|+++|..+++.+..+.... .+..+.|+..... +++++. +|.++.|++-. ++.+.-+. .-
T Consensus 855 I~~~d~~s~~~~~~~~l~~ne~a~~v~~~~fs~~~~~~~~~v~~~~~~~l~~~~~~~g~~ytyk~~~~g~~lellh~T~~ 934 (1205)
T KOG1898|consen 855 IRVFDPKSGKIICLVELGQNEAAFSVCAVDFSSSEYQPFVAVGVATTEQLDSKSISSGFVYTYKFVRNGDKLELLHKTEI 934 (1205)
T ss_pred EEEEcCCCCceEEEEeecCCcchhheeeeeeccCCCceEEEEEeeccccccccccCCCceEEEEEEecCceeeeeeccCC
Confidence 6666666666655555422 2444555543332 333332 34466666533 33222221 12
Q ss_pred CCCEEEEEEcCCCCEEEEEeCCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEE--EEECCCCc
Q 003236 724 KNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLE--LWNMTENK 801 (837)
Q Consensus 724 ~~~V~sl~~spdg~~LasgsDg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fspdg~~L~sgs~dg~I~--IwDl~s~~ 801 (837)
.+.|. +..|...++.+|-...+++||+...+.. ...++......|+.+.+ .+..|++|.....|. .|+-.++.
T Consensus 935 ~~~v~--Ai~~f~~~~LagvG~~l~~YdlG~K~lL-Rk~e~k~~p~~Is~iqt--~~~RI~VgD~qeSV~~~~y~~~~n~ 1009 (1205)
T KOG1898|consen 935 PGPVG--AICPFQGRVLAGVGRFLRLYDLGKKKLL-RKCELKFIPNRISSIQT--YGARIVVGDIQESVHFVRYRREDNQ 1009 (1205)
T ss_pred Cccce--EEeccCCEEEEecccEEEEeeCChHHHH-hhhhhccCceEEEEEee--cceEEEEeeccceEEEEEEecCCCe
Confidence 23343 4557667888777889999999765221 11112222344555554 345788888766554 45555566
Q ss_pred EEEecc--CCCCeeEEEEeCCCCEEEEEECCCcEEE
Q 003236 802 TLTLSA--HDKLVSSLAASTVNGMVASASHDKCVKI 835 (837)
Q Consensus 802 ~~~l~~--h~~~V~sla~spdg~~LaSgs~DG~I~I 835 (837)
.+.+.. -...|+++.+- |...+|.|..=|.+.+
T Consensus 1010 l~~fadD~~pR~Vt~~~~l-D~~tvagaDrfGNi~~ 1044 (1205)
T KOG1898|consen 1010 LIVFADDPVPRHVTALELL-DYDTVAGADRFGNIAV 1044 (1205)
T ss_pred EEEEeCCCccceeeEEEEe-cCCceeeccccCcEEE
Confidence 554432 23456666554 3445666655565544
|
|
| >PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs | Back alignment and domain information |
|---|
Probab=94.69 E-value=1.8 Score=52.69 Aligned_cols=26 Identities=35% Similarity=0.437 Sum_probs=20.9
Q ss_pred CCeEEEEEcCCCCEEEEEECCCcEEE
Q 003236 556 SKVESCHFSPDGKLLATGGHDKKAVL 581 (837)
Q Consensus 556 ~~V~sl~fSpdg~~Lasgs~Dg~I~V 581 (837)
-.|..|.++++|++||..|..|.+.+
T Consensus 85 f~v~~i~~n~~g~~lal~G~~~v~V~ 110 (717)
T PF10168_consen 85 FEVHQISLNPTGSLLALVGPRGVVVL 110 (717)
T ss_pred eeEEEEEECCCCCEEEEEcCCcEEEE
Confidence 46889999999999999987664443
|
It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells []. |
| >PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12 | Back alignment and domain information |
|---|
Probab=94.26 E-value=7.3 Score=42.24 Aligned_cols=165 Identities=8% Similarity=0.084 Sum_probs=95.7
Q ss_pred cEEEEECCCCeeeeEEecCC-------CeeEEEEecCC-----CEEEEEEc-CCeEEEEECCCCeEEEEEcCCC------
Q 003236 664 EIRYWSINNGSCAGVFKCQS-------GATQMRFQPRL-----GRILAAAI-ENYISILDVETQVCRLKLQGHK------ 724 (837)
Q Consensus 664 ~I~vwDl~t~~~i~~~~~~~-------~i~sl~~sp~g-----~~llags~-dg~I~iwDl~s~~~~~~l~~h~------ 724 (837)
.|.+||+++++.++.+..+. .+..+.+.... .+++.+.. .+.|.|||+.+++..+.+..+.
T Consensus 35 KLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYItD~~~~glIV~dl~~~~s~Rv~~~~~~~~p~~ 114 (287)
T PF03022_consen 35 KLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYITDSGGPGLIVYDLATGKSWRVLHNSFSPDPDA 114 (287)
T ss_dssp EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEEEETTTCEEEEEETTTTEEEEEETCGCTTS-SS
T ss_pred EEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEEeCCCcCcEEEEEccCCcEEEEecCCcceeccc
Confidence 67889999999888887643 35667776632 34444444 3689999999987766554321
Q ss_pred -------------CCEEEEEEcC---CCCEEEEEeCCeEEEEEcCC-----CCC------ceeEEEeecCCCceEEEEEe
Q 003236 725 -------------NQVHSVCWNT---SGEYLASVSDELVRVWSIGS-----GSK------GECIHELSCTGNKFHSCVFH 777 (837)
Q Consensus 725 -------------~~V~sl~~sp---dg~~LasgsDg~I~IwDl~s-----~~~------~~~i~~~~~~~~~I~sv~fs 777 (837)
..+..++.+| +++.|+...=...++|.+.+ ... ...+..+-........++++
T Consensus 115 ~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~lss~~ly~v~T~~L~~~~~~~~~~~~~~v~~lG~k~~~s~g~~~D 194 (287)
T PF03022_consen 115 GPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLSSRKLYRVPTSVLRDPSLSDAQALASQVQDLGDKGSQSDGMAID 194 (287)
T ss_dssp EEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT-SEEEEEEHHHHCSTT--HHH-HHHT-EEEEE---SECEEEEE
T ss_pred cceeccCceEecCCCccccccCCCCCCccEEEEEeCCCCcEEEEEHHHhhCccccccccccccceeccccCCCCceEEEC
Confidence 2356666655 66677766622233444332 111 01122222223456778899
Q ss_pred CCCCEEEEEEcCCeEEEEECCCC----c--EEEeccC-CCCeeEEEEeC--CCCEEEEEE
Q 003236 778 PTFPSLLVIGCYETLELWNMTEN----K--TLTLSAH-DKLVSSLAAST--VNGMVASAS 828 (837)
Q Consensus 778 pdg~~L~sgs~dg~I~IwDl~s~----~--~~~l~~h-~~~V~sla~sp--dg~~LaSgs 828 (837)
++|..+++--..+.|..|+..+. . .+..... -..+.++++.+ +|.+.+.++
T Consensus 195 ~~G~ly~~~~~~~aI~~w~~~~~~~~~~~~~l~~d~~~l~~pd~~~i~~~~~g~L~v~sn 254 (287)
T PF03022_consen 195 PNGNLYFTDVEQNAIGCWDPDGPYTPENFEILAQDPRTLQWPDGLKIDPEGDGYLWVLSN 254 (287)
T ss_dssp TTTEEEEEECCCTEEEEEETTTSB-GCCEEEEEE-CC-GSSEEEEEE-T--TS-EEEEE-
T ss_pred CCCcEEEecCCCCeEEEEeCCCCcCccchheeEEcCceeeccceeeeccccCceEEEEEC
Confidence 99887777778889999998761 2 2222222 35678999998 777666553
|
5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B. |
| >PF14761 HPS3_N: Hermansky-Pudlak syndrome 3 | Back alignment and domain information |
|---|
Probab=94.23 E-value=2.7 Score=43.06 Aligned_cols=141 Identities=20% Similarity=0.230 Sum_probs=82.4
Q ss_pred CEEEEEeCCCeEEEEEcCCCCceeEEeeccccceEEEEEcCCCCeEEEEEeCC--C---cEEEE---ECC--CCeeee--
Q 003236 610 SRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN--S---EIRYW---SIN--NGSCAG-- 677 (837)
Q Consensus 610 ~~Latgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~sl~fspdg~~llasgs~D--g---~I~vw---Dl~--t~~~i~-- 677 (837)
..|+.+...+.|.+|++.............-+.|..+.++..|++++..=.+. . .+++| +.. ....+.
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~v~vR 108 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEECPLLCTFSTVGRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEENSPVRVR 108 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCCCceeEEEcchhheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhcccCCcEEEE
Confidence 45555566788999999954444443333458899999999988666432222 1 44554 222 111111
Q ss_pred ---------------------EEecCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeE------EEEEc----CC-CC
Q 003236 678 ---------------------VFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVC------RLKLQ----GH-KN 725 (837)
Q Consensus 678 ---------------------~~~~~~~i~sl~~sp~g~~llags~dg~I~iwDl~s~~~------~~~l~----~h-~~ 725 (837)
.+.....+.+++..|-.+.|++|+. +.+.+|.+..... ...|. .| .+
T Consensus 109 iaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~~-~~l~lf~l~~~~~~~~~~~~lDFe~~l~~~~~~ 187 (215)
T PF14761_consen 109 IAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGCG-NKLVLFTLKYQTIQSEKFSFLDFERSLIDHIDN 187 (215)
T ss_pred EcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEcC-CEEEEEEEEEEEEecccccEEechhhhhheecC
Confidence 1112345678888887777777764 6777887654432 11111 11 11
Q ss_pred -CEEEEEEcCCCCEEEEEeCCeEEEEEcC
Q 003236 726 -QVHSVCWNTSGEYLASVSDELVRVWSIG 753 (837)
Q Consensus 726 -~V~sl~~spdg~~LasgsDg~I~IwDl~ 753 (837)
.+..+++. +.|+|..++..++|+.+.
T Consensus 188 ~~p~~v~ic--~~yiA~~s~~ev~Vlkl~ 214 (215)
T PF14761_consen 188 FKPTQVAIC--EGYIAVMSDLEVLVLKLE 214 (215)
T ss_pred ceEEEEEEE--eeEEEEecCCEEEEEEEe
Confidence 23445553 678888888888888653
|
|
| >COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=94.23 E-value=3.3 Score=47.81 Aligned_cols=268 Identities=13% Similarity=0.016 Sum_probs=133.6
Q ss_pred CCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEeccCC-CCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCcee
Q 003236 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHT-QWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSL 633 (837)
Q Consensus 555 ~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~-~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~~~~~~ 633 (837)
..+|..+.+.-.|. |.+|+.|| +..||..+++.+..-.... ..|..+.-+-.+ .|.+|+.+| |++.+.+.....-
T Consensus 164 d~~V~aLv~D~~g~-lWvgT~dG-L~~fd~~~gkalql~s~~~dk~I~al~~d~qg-~LWVGTdqG-v~~~e~~G~~~sn 239 (671)
T COG3292 164 DTPVVALVFDANGR-LWVGTPDG-LSYFDAGRGKALQLASPPLDKAINALIADVQG-RLWVGTDQG-VYLQEAEGWRASN 239 (671)
T ss_pred CccceeeeeeccCc-EEEecCCc-ceEEccccceEEEcCCCcchhhHHHHHHHhcC-cEEEEeccc-eEEEchhhccccc
Confidence 34588888888884 55577666 6778888877776554433 566666655554 477777776 7777766522211
Q ss_pred EEeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCee-eeEEecC---CCeeEEEEecCCCEEEEEEcCCeEEEE
Q 003236 634 RTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSC-AGVFKCQ---SGATQMRFQPRLGRILAAAIENYISIL 709 (837)
Q Consensus 634 ~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~-i~~~~~~---~~i~sl~~sp~g~~llags~dg~I~iw 709 (837)
....-....|..+.-+..|. +..|+.+|..+ +....... +...+.+ +.|.++-...+ +.+-+++.++.+++-
T Consensus 240 ~~~~lp~~~I~ll~qD~qG~--lWiGTenGl~r-~~l~rq~Lq~~~~~~~l~~S~vnsL~~D~d-GsLWv~t~~giv~~~ 315 (671)
T COG3292 240 WGPMLPSGNILLLVQDAQGE--LWIGTENGLWR-TRLPRQGLQIPLSKMHLGVSTVNSLWLDTD-GSLWVGTYGGIVRYL 315 (671)
T ss_pred cCCCCcchheeeeecccCCC--EEEeeccccee-EecCCCCccccccccCCccccccceeeccC-CCEeeeccCceEEEe
Confidence 11112234455555444443 33455555333 23332222 1122211 23344444444 446666666666554
Q ss_pred ECCCCeEEEEEcCCCCCE-EEEEEcC--CC-CEEEEEeCCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEE
Q 003236 710 DVETQVCRLKLQGHKNQV-HSVCWNT--SG-EYLASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLV 785 (837)
Q Consensus 710 Dl~s~~~~~~l~~h~~~V-~sl~~sp--dg-~~LasgsDg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fspdg~~L~s 785 (837)
+.. ......+...++.+ -.++..| .+ ......+-+.+.+-+-.++.....+ +.-.+..|+.+++..++. +-.
T Consensus 316 ~a~-w~~ma~in~~dG~v~~~~~~a~~ll~~~v~~~ns~g~L~van~stG~~v~sv--~q~Rg~nit~~~~d~~g~-lWl 391 (671)
T COG3292 316 TAD-WKRMAVINDSDGGVSQYEAVAPALLSWGVRQLNSIGELMVANGSTGELVRSV--HQLRGMNITTTLEDSRGR-LWL 391 (671)
T ss_pred cch-hhheeeeecCCCchhhhhccCchhcccceeeccccceEEEecCCCCcEEEEe--eeccccccchhhhccCCc-EEE
Confidence 432 11111121111111 1111111 01 1111111223333333333211122 222235566777777554 777
Q ss_pred EEcCCeEEEEECCC-CcEEEec--cCCCCeeEEEEeCCCCEEEEEECCCcEEE
Q 003236 786 IGCYETLELWNMTE-NKTLTLS--AHDKLVSSLAASTVNGMVASASHDKCVKI 835 (837)
Q Consensus 786 gs~dg~I~IwDl~s-~~~~~l~--~h~~~V~sla~spdg~~LaSgs~DG~I~I 835 (837)
++..+-+..|+..+ +..+... ...++|..|.=.|+++ |..|+.+|.+++
T Consensus 392 gs~q~GLsrl~n~n~~avlde~agl~ss~V~aived~dns-LWIGTs~Glvk~ 443 (671)
T COG3292 392 GSMQNGLSRLDNKNEWAVLDEDAGLPSSEVSAIVEDPDNS-LWIGTSGGLVKR 443 (671)
T ss_pred EecccchhhhccCCcccccccccCCcccceeeeeecCCCC-EEEeccCCeEec
Confidence 77776677777766 3333222 2356788888888888 677888887653
|
|
| >PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain | Back alignment and domain information |
|---|
Probab=94.23 E-value=0.12 Score=39.61 Aligned_cols=30 Identities=23% Similarity=0.432 Sum_probs=27.9
Q ss_pred CCCeEEEEEcCCCCEEEEEECCCcEEEEeC
Q 003236 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCT 584 (837)
Q Consensus 555 ~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~ 584 (837)
...|.+++|+|...+||.|+.||.|.||.+
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl 40 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL 40 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEEC
Confidence 456999999999999999999999999998
|
|
| >PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length | Back alignment and domain information |
|---|
Probab=94.22 E-value=1.6 Score=51.96 Aligned_cols=125 Identities=11% Similarity=0.117 Sum_probs=81.9
Q ss_pred eeeEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEec-cCCCCeEEEEEc--CCCCEEEEEeCCCe
Q 003236 544 TFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLE-EHTQWITDVRFS--PSLSRLATSSADRT 620 (837)
Q Consensus 544 ~~~~~~~l~~H~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~-~h~~~I~~l~fs--pdg~~Latgs~Dg~ 620 (837)
.+.....+...-..++-+.-|.-++..++-+....+.|||...+.....-. ...+.|.++.|. |++..+++.+..+.
T Consensus 18 ~w~~t~~~~T~i~~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~ 97 (631)
T PF12234_consen 18 EWLLTSTFETGISNPSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHH 97 (631)
T ss_pred EEEEEEEEecCCCCcceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcE
Confidence 334445555555566667667666665555556689999999877554332 357889999996 58899999999999
Q ss_pred EEEEEcC-----CCC---ceeEE--eeccc-cceEEEEEcCCCCeEEEEEeCCCcEEEEECC
Q 003236 621 VRVWDTE-----NPD---YSLRT--FTGHS-TTVMSLDFHPSKEDLLCSCDNNSEIRYWSIN 671 (837)
Q Consensus 621 I~IWDl~-----~~~---~~~~~--~~~h~-~~V~sl~fspdg~~llasgs~Dg~I~vwDl~ 671 (837)
|.+|.-. ... ..++. +..|+ .+|.+..|.++|. +++++ ++.+.|+|-.
T Consensus 98 v~l~~Q~R~dy~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~-LvV~s--GNqlfv~dk~ 156 (631)
T PF12234_consen 98 VLLYTQLRYDYTNKGPSWAPIRKIDISSHTPHPIGDSIWLKDGT-LVVGS--GNQLFVFDKW 156 (631)
T ss_pred EEEEEccchhhhcCCcccceeEEEEeecCCCCCccceeEecCCe-EEEEe--CCEEEEECCC
Confidence 9998532 111 11221 23343 5799999999875 33233 4578888653
|
This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits. |
| >PRK10350 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=94.20 E-value=0.17 Score=46.11 Aligned_cols=29 Identities=34% Similarity=0.316 Sum_probs=14.8
Q ss_pred cccccchhhhh-hHHHHHHHHHHHHHHHHH
Q 003236 68 NEKHSESAASY-IESQVIKAREQQQQQQQQ 96 (837)
Q Consensus 68 ~~~~s~~~~~y-~q~qq~q~~~qqqqqqq~ 96 (837)
+...++...-| +.+++..+.+.|.+|+++
T Consensus 21 N~~NNPnqpGY~ipSQQRmQtqMQ~QQ~qQ 50 (145)
T PRK10350 21 NTLNNPNQPGYQIPSQQRMQTQMQTQQIQQ 50 (145)
T ss_pred hccCCCCCCCCcCcHHHHHHHHHHHHHHHH
Confidence 33444555667 666655544444444333
|
|
| >PHA02790 Kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=94.15 E-value=1.4 Score=51.64 Aligned_cols=141 Identities=7% Similarity=-0.009 Sum_probs=66.8
Q ss_pred CCCEEEEEECCC-----cEEEEeCCCCeEEEE--eccCCCCeEEEEEcCCCCEEEEEeCC--CeEEEEEcCCCCcee-EE
Q 003236 566 DGKLLATGGHDK-----KAVLWCTESFTVKST--LEEHTQWITDVRFSPSLSRLATSSAD--RTVRVWDTENPDYSL-RT 635 (837)
Q Consensus 566 dg~~Lasgs~Dg-----~I~VWd~~t~~~~~~--l~~h~~~I~~l~fspdg~~Latgs~D--g~I~IWDl~~~~~~~-~~ 635 (837)
++.++++||.++ .+..||..+.+.... +.........+. -++...+.|+.+ ..+..||..++.... ..
T Consensus 271 ~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v~--~~~~iYviGG~~~~~sve~ydp~~n~W~~~~~ 348 (480)
T PHA02790 271 GEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYASGVP--ANNKLYVVGGLPNPTSVERWFHGDAAWVNMPS 348 (480)
T ss_pred CCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcceEEE--ECCEEEEECCcCCCCceEEEECCCCeEEECCC
Confidence 455667776543 467788776543322 111111122222 356777777754 357888876654311 11
Q ss_pred eeccccceEEEEEcCCCCeEEEEEeCCC---cEEEEECCCCeeeeEEecCCCee-EEEEecCCCEEEEEEcCCeEEEEEC
Q 003236 636 FTGHSTTVMSLDFHPSKEDLLCSCDNNS---EIRYWSINNGSCAGVFKCQSGAT-QMRFQPRLGRILAAAIENYISILDV 711 (837)
Q Consensus 636 ~~~h~~~V~sl~fspdg~~llasgs~Dg---~I~vwDl~t~~~i~~~~~~~~i~-sl~~sp~g~~llags~dg~I~iwDl 711 (837)
+.........+.+ ++.+.+.|+.++ .+..||.++..-...-....+.. .....-++ .|++.+ |.+.+||.
T Consensus 349 l~~~r~~~~~~~~---~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r~~~~~~~~~~-~IYv~G--G~~e~ydp 422 (480)
T PHA02790 349 LLKPRCNPAVASI---NNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPHYKSCALVFGR-RLFLVG--RNAEFYCE 422 (480)
T ss_pred CCCCCcccEEEEE---CCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCccccceEEEECC-EEEEEC--CceEEecC
Confidence 1111111112222 245666776543 46788887665433221111111 11122333 444433 45778888
Q ss_pred CCC
Q 003236 712 ETQ 714 (837)
Q Consensus 712 ~s~ 714 (837)
++.
T Consensus 423 ~~~ 425 (480)
T PHA02790 423 SSN 425 (480)
T ss_pred CCC
Confidence 765
|
|
| >PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast) | Back alignment and domain information |
|---|
Probab=94.15 E-value=10 Score=45.31 Aligned_cols=123 Identities=17% Similarity=0.170 Sum_probs=68.6
Q ss_pred EEecCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCe--EEEEEcC-CCCCEEEEEEcC------CCCEEEEEe--CC-
Q 003236 678 VFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQV--CRLKLQG-HKNQVHSVCWNT------SGEYLASVS--DE- 745 (837)
Q Consensus 678 ~~~~~~~i~sl~~sp~g~~llags~dg~I~iwDl~s~~--~~~~l~~-h~~~V~sl~~sp------dg~~Lasgs--Dg- 745 (837)
.+.....+..+.|..++..+++....|.|.+||...+. .+..+.. +...+.--+|-+ ...++++.+ ++
T Consensus 125 ~~kl~~kvv~Ik~~~~~~~I~vvl~nG~i~~~d~~~~~l~~~~~l~~~~~~~v~ys~fv~~~~~~~~~~~ll~v~~~~~~ 204 (670)
T PF10395_consen 125 ELKLDDKVVGIKFSSDGKIIYVVLENGSIQIYDFSENSLEKVPQLKLKSSINVSYSKFVNDFELENGKDLLLTVSQLSNS 204 (670)
T ss_pred EEEcccceEEEEEecCCCEEEEEEcCCcEEEEeccccccccccccccccccceehhhhhcccccccCCceEEEEEEcCCC
Confidence 44557889999999999999999999999999993322 1112221 222221113322 123444333 22
Q ss_pred --eEEEEEcCCCCCceeEEEee---cCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE
Q 003236 746 --LVRVWSIGSGSKGECIHELS---CTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL 803 (837)
Q Consensus 746 --~I~IwDl~s~~~~~~i~~~~---~~~~~I~sv~fspdg~~L~sgs~dg~I~IwDl~s~~~~ 803 (837)
+++++.+.... ..+.++. .+......+.|.-....|+.- .++.|.+|++...+..
T Consensus 205 k~~ykL~~l~~~~--~~~~El~s~~~e~~~~~~s~f~Y~~G~LY~l-~~~~i~~ysip~f~~~ 264 (670)
T PF10395_consen 205 KLSYKLISLSNES--SSIFELSSTILENFGLEDSKFCYQFGKLYQL-SKKTISSYSIPNFQIQ 264 (670)
T ss_pred cEEEEEEEeccCC--cceEEeehheeccCCcccceEEEeCCEEEEE-eCCEEEEEEcCCceEE
Confidence 78888882211 2222222 222333333343333334444 7779999999887655
|
It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex []. |
| >TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein | Back alignment and domain information |
|---|
Probab=94.08 E-value=6.9 Score=43.04 Aligned_cols=101 Identities=12% Similarity=0.063 Sum_probs=48.5
Q ss_pred CeEEEEEeCC-----CcEEEEECCCCeee---eEEe-cCCCe--eEEEEecCCCEEEEEEc-----CCeEEEEECCCCe-
Q 003236 653 EDLLCSCDNN-----SEIRYWSINNGSCA---GVFK-CQSGA--TQMRFQPRLGRILAAAI-----ENYISILDVETQV- 715 (837)
Q Consensus 653 ~~llasgs~D-----g~I~vwDl~t~~~i---~~~~-~~~~i--~sl~~sp~g~~llags~-----dg~I~iwDl~s~~- 715 (837)
+.+++.|+.+ ..+..||+.+.+.. ..+. ..... .+++. -++..++.|+. ...+..||+.+.+
T Consensus 73 ~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~-~~~~iYv~GG~~~~~~~~~v~~yd~~~~~W 151 (323)
T TIGR03548 73 NGIYYIGGSNSSERFSSVYRITLDESKEELICETIGNLPFTFENGSACY-KDGTLYVGGGNRNGKPSNKSYLFNLETQEW 151 (323)
T ss_pred CEEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEE-ECCEEEEEeCcCCCccCceEEEEcCCCCCe
Confidence 4566666644 35777787765531 1111 11111 12222 24455555553 2468889987653
Q ss_pred -EEEEEcCCCCCEEEEEEcCCCCEEEEEe-CC----eEEEEEcCCC
Q 003236 716 -CRLKLQGHKNQVHSVCWNTSGEYLASVS-DE----LVRVWSIGSG 755 (837)
Q Consensus 716 -~~~~l~~h~~~V~sl~~spdg~~Lasgs-Dg----~I~IwDl~s~ 755 (837)
.+..+... ......+..-++++++.|+ ++ .+.+||..+.
T Consensus 152 ~~~~~~p~~-~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~ 196 (323)
T TIGR03548 152 FELPDFPGE-PRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKN 196 (323)
T ss_pred eECCCCCCC-CCCcceEEEECCEEEEEcCCCCccccceEEEecCCC
Confidence 22222211 1112222233566666665 43 3568888764
|
Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat. |
| >PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I [] | Back alignment and domain information |
|---|
Probab=94.03 E-value=21 Score=44.33 Aligned_cols=158 Identities=18% Similarity=0.193 Sum_probs=95.6
Q ss_pred CCCCCeEEEEEc---C----CCCEEEEEECCCcEEEEeCC------C---------CeEEEEecc---CCCCeEEEEEcC
Q 003236 553 ASTSKVESCHFS---P----DGKLLATGGHDKKAVLWCTE------S---------FTVKSTLEE---HTQWITDVRFSP 607 (837)
Q Consensus 553 ~H~~~V~sl~fS---p----dg~~Lasgs~Dg~I~VWd~~------t---------~~~~~~l~~---h~~~I~~l~fsp 607 (837)
.-..+|..|+|. . ..++|++=. ...+.|+... . ..++..+.. ...+..+++|+|
T Consensus 77 ~~~~PI~qI~fa~~~~~~~~~~~~l~Vrt-~~st~I~~p~~~~~~~~~~~~~s~i~~~~l~~i~~~~tgg~~~aDv~FnP 155 (765)
T PF10214_consen 77 DDGSPIKQIKFATLSESFDEKSRWLAVRT-ETSTTILRPEYHRVISSIRSRPSRIDPNPLLTISSSDTGGFPHADVAFNP 155 (765)
T ss_pred CCCCCeeEEEecccccccCCcCcEEEEEc-CCEEEEEEcccccccccccCCccccccceeEEechhhcCCCccceEEecc
Confidence 345678889988 2 224666544 4567777611 1 123334431 234678999999
Q ss_pred -CCCEEEEEeCCCeEEEEEcCCCC----ceeEEeeccc----------cceEEEEEcCCCCeEEEEEeCCCcEEEEECCC
Q 003236 608 -SLSRLATSSADRTVRVWDTENPD----YSLRTFTGHS----------TTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN 672 (837)
Q Consensus 608 -dg~~Latgs~Dg~I~IWDl~~~~----~~~~~~~~h~----------~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t 672 (837)
+...||+....|...||++.... ..+.....+. .....|.|.++.+.+| .++ ...+.++|+++
T Consensus 156 ~~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~~~~~lL-v~~-r~~l~~~d~~~ 233 (765)
T PF10214_consen 156 WDQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVSDSNRLL-VCN-RSKLMLIDFES 233 (765)
T ss_pred CccceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecCCCCEEE-EEc-CCceEEEECCC
Confidence 46689999999999999992111 1111111112 2234778887766666 444 56799999998
Q ss_pred Ceeee---EEecCCCeeEEEEecCCCEEEEEEcCCeEEEEECCC
Q 003236 673 GSCAG---VFKCQSGATQMRFQPRLGRILAAAIENYISILDVET 713 (837)
Q Consensus 673 ~~~i~---~~~~~~~i~sl~~sp~g~~llags~dg~I~iwDl~s 713 (837)
..... .......|..+.-++.....+..-....|..+|+..
T Consensus 234 ~~~~~~l~~~~~~~~IlDv~~~~~~~~~~FiLTs~eiiw~~~~~ 277 (765)
T PF10214_consen 234 NWQTEYLVTAKTWSWILDVKRSPDNPSHVFILTSKEIIWLDVKS 277 (765)
T ss_pred CCccchhccCCChhheeeEEecCCccceEEEEecCeEEEEEccC
Confidence 76533 222345688888887633333333447788888876
|
These proteins are found in fungi. |
| >PLN02153 epithiospecifier protein | Back alignment and domain information |
|---|
Probab=93.92 E-value=6.7 Score=43.51 Aligned_cols=64 Identities=16% Similarity=0.131 Sum_probs=33.9
Q ss_pred CCCEEEEEECC-------CcEEEEeCCCCeEEEEecc---CCC---CeEEEEEcCCCCEEEEEeCC-----CeEEEEEcC
Q 003236 566 DGKLLATGGHD-------KKAVLWCTESFTVKSTLEE---HTQ---WITDVRFSPSLSRLATSSAD-----RTVRVWDTE 627 (837)
Q Consensus 566 dg~~Lasgs~D-------g~I~VWd~~t~~~~~~l~~---h~~---~I~~l~fspdg~~Latgs~D-----g~I~IWDl~ 627 (837)
++++++.|+.+ ..+.+||+.+.+-...-.. ... ....+.+ ++++++.|+.+ ..+.+||+.
T Consensus 32 ~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~p~~~~~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~ 109 (341)
T PLN02153 32 GDKLYSFGGELKPNEHIDKDLYVFDFNTHTWSIAPANGDVPRISCLGVRMVAV--GTKLYIFGGRDEKREFSDFYSYDTV 109 (341)
T ss_pred CCEEEEECCccCCCCceeCcEEEEECCCCEEEEcCccCCCCCCccCceEEEEE--CCEEEEECCCCCCCccCcEEEEECC
Confidence 45566666653 3578888877543321110 010 1222222 45667777653 357888888
Q ss_pred CCCc
Q 003236 628 NPDY 631 (837)
Q Consensus 628 ~~~~ 631 (837)
+...
T Consensus 110 t~~W 113 (341)
T PLN02153 110 KNEW 113 (341)
T ss_pred CCEE
Confidence 6543
|
|
| >COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=93.85 E-value=0.74 Score=51.98 Aligned_cols=141 Identities=12% Similarity=0.135 Sum_probs=92.9
Q ss_pred CCCeEEEEEeCCCcEEEEECCCCeeeeEEecCCCeeEEEEecCCC-------EEEEEEcCCeEEEEECCCCe-E--EEEE
Q 003236 651 SKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLG-------RILAAAIENYISILDVETQV-C--RLKL 720 (837)
Q Consensus 651 dg~~llasgs~Dg~I~vwDl~t~~~i~~~~~~~~i~sl~~sp~g~-------~llags~dg~I~iwDl~s~~-~--~~~l 720 (837)
+...++..++....++-.|++.|+.+..+..+..+ -+.|.|..+ .-++|-++..|.-.|.+-.. . +...
T Consensus 478 dssli~~dg~~~~kLykmDIErGkvveeW~~~ddv-vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi~v~es 556 (776)
T COG5167 478 DSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDDV-VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKIKVVES 556 (776)
T ss_pred CcceEEecCCCcccceeeecccceeeeEeecCCcc-eeecCCchhHHhcCccceEEeecccceEEecccccCCceeeeee
Confidence 44445555666678888999999999999987777 778888532 24566677777777776432 1 1222
Q ss_pred cC--CCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEEC
Q 003236 721 QG--HKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNM 797 (837)
Q Consensus 721 ~~--h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fspdg~~L~sgs~dg~I~IwDl 797 (837)
+. ......|..-. ..-|+++++ .|.|++||--.. .....+.+.+..|..+..+.+|++|++.|. ..|.+.|+
T Consensus 557 KdY~tKn~Fss~~tT-esGyIa~as~kGDirLyDRig~---rAKtalP~lG~aIk~idvta~Gk~ilaTCk-~yllL~d~ 631 (776)
T COG5167 557 KDYKTKNKFSSGMTT-ESGYIAAASRKGDIRLYDRIGK---RAKTALPGLGDAIKHIDVTANGKHILATCK-NYLLLTDV 631 (776)
T ss_pred hhccccccccccccc-cCceEEEecCCCceeeehhhcc---hhhhcCcccccceeeeEeecCCcEEEEeec-ceEEEEec
Confidence 21 12223333322 345777777 889999996443 233445667788999999999998776654 46777776
|
|
| >PHA02790 Kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=93.75 E-value=3.2 Score=48.56 Aligned_cols=144 Identities=8% Similarity=-0.016 Sum_probs=68.4
Q ss_pred CeEEEEEeCC--CcEEEEECCCCeeeeEEecCCCee-EEEEecCCCEEEEEEcC---CeEEEEECCCCeEEEE--EcCCC
Q 003236 653 EDLLCSCDNN--SEIRYWSINNGSCAGVFKCQSGAT-QMRFQPRLGRILAAAIE---NYISILDVETQVCRLK--LQGHK 724 (837)
Q Consensus 653 ~~llasgs~D--g~I~vwDl~t~~~i~~~~~~~~i~-sl~~sp~g~~llags~d---g~I~iwDl~s~~~~~~--l~~h~ 724 (837)
+.+++.|+.+ ..+..||..+++-...-....... .....-++..+++|+.+ ..+..||.++..-... .....
T Consensus 319 ~~iYviGG~~~~~sve~ydp~~n~W~~~~~l~~~r~~~~~~~~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r 398 (480)
T PHA02790 319 NKLYVVGGLPNPTSVERWFHGDAAWVNMPSLLKPRCNPAVASINNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPH 398 (480)
T ss_pred CEEEEECCcCCCCceEEEECCCCeEEECCCCCCCCcccEEEEECCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCcc
Confidence 4566677653 457888877654332222222211 12223345555666654 3577888876532221 11111
Q ss_pred CCEEEEEEcCCCCEEEEEeCCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcC-----CeEEEEECCC
Q 003236 725 NQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCY-----ETLELWNMTE 799 (837)
Q Consensus 725 ~~V~sl~~spdg~~LasgsDg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fspdg~~L~sgs~d-----g~I~IwDl~s 799 (837)
... +++ .-++++.+.| |.+.+||..+.. ...+.......... .++ .-+++..++||.+ ..|..||..+
T Consensus 399 ~~~-~~~-~~~~~IYv~G--G~~e~ydp~~~~-W~~~~~m~~~r~~~-~~~-v~~~~IYviGG~~~~~~~~~ve~Yd~~~ 471 (480)
T PHA02790 399 YKS-CAL-VFGRRLFLVG--RNAEFYCESSNT-WTLIDDPIYPRDNP-ELI-IVDNKLLLIGGFYRGSYIDTIEVYNNRT 471 (480)
T ss_pred ccc-eEE-EECCEEEEEC--CceEEecCCCCc-EeEcCCCCCCcccc-EEE-EECCEEEEECCcCCCcccceEEEEECCC
Confidence 111 222 2345555555 356778886642 12222222111122 222 2355556666543 3677888777
Q ss_pred CcEE
Q 003236 800 NKTL 803 (837)
Q Consensus 800 ~~~~ 803 (837)
++..
T Consensus 472 ~~W~ 475 (480)
T PHA02790 472 YSWN 475 (480)
T ss_pred CeEE
Confidence 6653
|
|
| >KOG1896 consensus mRNA cleavage and polyadenylation factor II complex, subunit CFT1 (CPSF subunit) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=93.73 E-value=22 Score=44.81 Aligned_cols=169 Identities=14% Similarity=0.106 Sum_probs=92.4
Q ss_pred CcEEEEECCCCeeeeEEec--CCCeeEEEEec---------CCCEEEEEEc---------CCeEEEEECCC-----Ce--
Q 003236 663 SEIRYWSINNGSCAGVFKC--QSGATQMRFQP---------RLGRILAAAI---------ENYISILDVET-----QV-- 715 (837)
Q Consensus 663 g~I~vwDl~t~~~i~~~~~--~~~i~sl~~sp---------~g~~llags~---------dg~I~iwDl~s-----~~-- 715 (837)
..|.+.+..+++.+..+.. ...+.++++.. ...++++|.. -|.+.|||+-. ++
T Consensus 1004 f~i~LisP~sw~vi~~iefq~~E~v~~~k~v~L~~~~t~~~~k~ylavGT~~~~gEDv~~RGr~hi~diIeVVPepgkP~ 1083 (1366)
T KOG1896|consen 1004 FSIQLISPESWEVIDKIEFQENEHVLHMKYVILDDEETTKGKKPYLAVGTAFIQGEDVPARGRIHIFDIIEVVPEPGKPF 1083 (1366)
T ss_pred ceeEEecCCccccccccccCccceeeEEEEEEEEecccccCCcceEEEEEeecccccccCcccEEEEEEEEecCCCCCCc
Confidence 3455555555555544433 23344444321 1345666653 37899998632 21
Q ss_pred ---EEEEE--cCCCCCEEEEEEcCCCCEEEEEeCCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCC
Q 003236 716 ---CRLKL--QGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYE 790 (837)
Q Consensus 716 ---~~~~l--~~h~~~V~sl~~spdg~~LasgsDg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fspdg~~L~sgs~dg 790 (837)
.++.+ +.-++.|..+|=. +| +|+++..-.|.||++........+..+ .-.+......--.++|++|.-..
T Consensus 1084 t~~KlKel~~eE~KGtVsavceV-~G-~l~~~~GqKI~v~~l~r~~~ligVaFi---D~~~yv~s~~~vknlIl~gDV~k 1158 (1366)
T KOG1896|consen 1084 TKNKLKELYIEEQKGTVSAVCEV-RG-HLLSSQGQKIIVRKLDRDSELIGVAFI---DLPLYVHSMKVVKNLILAGDVMK 1158 (1366)
T ss_pred ccceeeeeehhhcccceEEEEEe-cc-EEEEccCcEEEEEEeccCCcceeeEEe---ccceeEEehhhhhhheehhhhhh
Confidence 11211 2345677666532 34 455666678999999544221222221 22233333333455677777777
Q ss_pred eEEEEECCCCc-EEEec---cCCCCeeEEEEeCCCC--EEEEEECCCcEEEe
Q 003236 791 TLELWNMTENK-TLTLS---AHDKLVSSLAASTVNG--MVASASHDKCVKIW 836 (837)
Q Consensus 791 ~I~IwDl~s~~-~~~l~---~h~~~V~sla~spdg~--~LaSgs~DG~I~IW 836 (837)
.|.+.-..... .+.+. ...-.+.++.|--||. +++++..|++|++|
T Consensus 1159 sisfl~fqeep~rlsL~srd~~~l~v~s~EFLVdg~~L~flvsDa~rNi~vy 1210 (1366)
T KOG1896|consen 1159 SISFLGFQEEPYRLSLLSRDFEPLNVYSTEFLVDGSNLSFLVSDADRNIHVY 1210 (1366)
T ss_pred ceEEEEEccCceEEEEeecCCchhhceeeeeEEcCCeeEEEEEcCCCcEEEE
Confidence 77766554332 22222 2234577888877775 67788899999886
|
|
| >PLN02193 nitrile-specifier protein | Back alignment and domain information |
|---|
Probab=93.64 E-value=9.5 Score=44.47 Aligned_cols=192 Identities=6% Similarity=-0.031 Sum_probs=90.2
Q ss_pred CCCEEEEEeCC-------CeEEEEEcCCCCceeEEeec-ccc--c-eEEEEEcCCCCeEEEEEeCC-----CcEEEEECC
Q 003236 608 SLSRLATSSAD-------RTVRVWDTENPDYSLRTFTG-HST--T-VMSLDFHPSKEDLLCSCDNN-----SEIRYWSIN 671 (837)
Q Consensus 608 dg~~Latgs~D-------g~I~IWDl~~~~~~~~~~~~-h~~--~-V~sl~fspdg~~llasgs~D-----g~I~vwDl~ 671 (837)
++.+++.|+.+ ..+.+||+.+.........+ ... . -.+++.. ++.+++.|+.+ ..+.+||+.
T Consensus 175 ~~~iyv~GG~~~~~~~~~~~v~~yD~~~~~W~~~~~~g~~P~~~~~~~~~v~~--~~~lYvfGG~~~~~~~ndv~~yD~~ 252 (470)
T PLN02193 175 GNKIYSFGGEFTPNQPIDKHLYVFDLETRTWSISPATGDVPHLSCLGVRMVSI--GSTLYVFGGRDASRQYNGFYSFDTT 252 (470)
T ss_pred CCEEEEECCcCCCCCCeeCcEEEEECCCCEEEeCCCCCCCCCCcccceEEEEE--CCEEEEECCCCCCCCCccEEEEECC
Confidence 34556666643 24778888775543211111 000 0 1112222 34566677654 368889998
Q ss_pred CCeeeeEEec---CCC--eeEEEEecCCCEEEEEEcC-----CeEEEEECCCCeEEEEEc-----CCCCCEEEEEEcCCC
Q 003236 672 NGSCAGVFKC---QSG--ATQMRFQPRLGRILAAAIE-----NYISILDVETQVCRLKLQ-----GHKNQVHSVCWNTSG 736 (837)
Q Consensus 672 t~~~i~~~~~---~~~--i~sl~~sp~g~~llags~d-----g~I~iwDl~s~~~~~~l~-----~h~~~V~sl~~spdg 736 (837)
+.+-...... ..+ -.+++ .-++..++.|+.+ ..+..||+.+.+-...-. ..... .+++. -++
T Consensus 253 t~~W~~l~~~~~~P~~R~~h~~~-~~~~~iYv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~R~~-~~~~~-~~g 329 (470)
T PLN02193 253 TNEWKLLTPVEEGPTPRSFHSMA-ADEENVYVFGGVSATARLKTLDSYNIVDKKWFHCSTPGDSFSIRGG-AGLEV-VQG 329 (470)
T ss_pred CCEEEEcCcCCCCCCCccceEEE-EECCEEEEECCCCCCCCcceEEEEECCCCEEEeCCCCCCCCCCCCC-cEEEE-ECC
Confidence 7654432221 111 12222 2344555566543 357788887654321110 01111 12222 256
Q ss_pred CEEEEEe-C----CeEEEEEcCCCCCceeEEEee-cCCCceEEEEEeCCCCEEEEEEcC--------------CeEEEEE
Q 003236 737 EYLASVS-D----ELVRVWSIGSGSKGECIHELS-CTGNKFHSCVFHPTFPSLLVIGCY--------------ETLELWN 796 (837)
Q Consensus 737 ~~Lasgs-D----g~I~IwDl~s~~~~~~i~~~~-~~~~~I~sv~fspdg~~L~sgs~d--------------g~I~IwD 796 (837)
++++.++ + ..|.+||+.+.. ...+.... .........+..-+++.+++|+.. ..+.+||
T Consensus 330 kiyviGG~~g~~~~dv~~yD~~t~~-W~~~~~~g~~P~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~ndv~~~D 408 (470)
T PLN02193 330 KVWVVYGFNGCEVDDVHYYDPVQDK-WTQVETFGVRPSERSVFASAAVGKHIVIFGGEIAMDPLAHVGPGQLTDGTFALD 408 (470)
T ss_pred cEEEEECCCCCccCceEEEECCCCE-EEEeccCCCCCCCcceeEEEEECCEEEEECCccCCccccccCccceeccEEEEE
Confidence 6666555 4 468999988752 11221110 011111112223345566666642 2588999
Q ss_pred CCCCcEEEe
Q 003236 797 MTENKTLTL 805 (837)
Q Consensus 797 l~s~~~~~l 805 (837)
+.+.+...+
T Consensus 409 ~~t~~W~~~ 417 (470)
T PLN02193 409 TETLQWERL 417 (470)
T ss_pred cCcCEEEEc
Confidence 988876643
|
|
| >PF10433 MMS1_N: Mono-functional DNA-alkylating methyl methanesulfonate N-term; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 2B5N_C 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A | Back alignment and domain information |
|---|
Probab=93.59 E-value=19 Score=42.33 Aligned_cols=246 Identities=12% Similarity=0.091 Sum_probs=121.1
Q ss_pred cCCCCEEEEEECCCcEEEEeCCCCe---EEEEeccC-CCCeEEEEEcCCC-CEEEEEeCCCeEEEEEcCCCCceeEEeec
Q 003236 564 SPDGKLLATGGHDKKAVLWCTESFT---VKSTLEEH-TQWITDVRFSPSL-SRLATSSADRTVRVWDTENPDYSLRTFTG 638 (837)
Q Consensus 564 Spdg~~Lasgs~Dg~I~VWd~~t~~---~~~~l~~h-~~~I~~l~fspdg-~~Latgs~Dg~I~IWDl~~~~~~~~~~~~ 638 (837)
..++..++.+..+|.++...+.... .+..+ +. .....++++..++ .+|+.||.-|.=.++.+......+.....
T Consensus 219 ~~~~~~~lL~~e~G~l~~l~l~~~~~~i~i~~~-g~~~~~~s~l~~l~~g~d~lf~gs~~gds~l~~~~~~~l~~~~~~~ 297 (504)
T PF10433_consen 219 DKDGDRILLQDEDGDLYLLTLDNDGGSISITYL-GTLCSIASSLTYLKNGGDYLFVGSEFGDSQLLQISLSNLEVLDSLP 297 (504)
T ss_dssp STTSSEEEEEETTSEEEEEEEEEEEEEEEEEEE-EE--S-ESEEEEESTT--EEEEEESSS-EEEEEEESESEEEEEEE-
T ss_pred cCCCCEEEEEeCCCeEEEEEEEECCCeEEEEEc-CCcCChhheEEEEcCCCEEEEEEEecCCcEEEEEeCCCcEEEEecc
Confidence 4467788889999999888765433 12222 22 4556777777654 47888877554444444433332322233
Q ss_pred cccceEEEEEcCC---CC-------eEEEEEe--CCCcEEEEECCCC---eeeeEEecCCCeeEEEEecC----CCEEEE
Q 003236 639 HSTTVMSLDFHPS---KE-------DLLCSCD--NNSEIRYWSINNG---SCAGVFKCQSGATQMRFQPR----LGRILA 699 (837)
Q Consensus 639 h~~~V~sl~fspd---g~-------~llasgs--~Dg~I~vwDl~t~---~~i~~~~~~~~i~sl~~sp~----g~~lla 699 (837)
.-++|.++++.+. +. .++++++ .+|.+++..-.-+ .........+ +..+-..+. +.+++.
T Consensus 298 N~~Pi~D~~v~~~~~~~~~~~~~~~~lv~~sG~g~~gsL~~lr~Gi~~~~~~~~~~~l~~-v~~iW~l~~~~~~~~~lv~ 376 (504)
T PF10433_consen 298 NWGPIVDFCVVDSSNSGQPSNPSSDQLVACSGAGKRGSLRILRNGIGIEGLELASSELPG-VTGIWTLKLSSSDHSYLVL 376 (504)
T ss_dssp ---SEEEEEEE-TSSSSS-------EEEEEESSGGG-EEEEEEESBEEE--EEEEEEEST-EEEEEEE-SSSSSBSEEEE
T ss_pred CcCCccceEEeccccCCCCcccccceEEEEECcCCCCcEEEEeccCCceeeeeeccCCCC-ceEEEEeeecCCCceEEEE
Confidence 4578888888532 12 4555544 4677877633211 1222222222 444333332 345555
Q ss_pred EEcCCeEEEEECC---CCeEEEEEc--CC---CCCEEEEEEcCCCCEEEEEeCCeEEEEEcCCCCCceeEEEeec-CCCc
Q 003236 700 AAIENYISILDVE---TQVCRLKLQ--GH---KNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSC-TGNK 770 (837)
Q Consensus 700 gs~dg~I~iwDl~---s~~~~~~l~--~h---~~~V~sl~~spdg~~LasgsDg~I~IwDl~s~~~~~~i~~~~~-~~~~ 770 (837)
+.. ..-.++.+. ....+..+. +. ...+.+-.+. +..++=.....|++.+.... ........ .+..
T Consensus 377 S~~-~~T~vl~~~~~d~~e~~~e~~~~~f~~~~~Tl~~~~~~--~~~ivQVt~~~i~l~~~~~~---~~~~~w~~~~~~~ 450 (504)
T PF10433_consen 377 SFP-NETRVLQISEGDDGEEVEEVEEDGFDTDEPTLAAGNVG--DGRIVQVTPKGIRLIDLEDG---KLTQEWKPPAGSI 450 (504)
T ss_dssp EES-SEEEEEEES----SSEEEEE---TS-SSS-EEEEEEET--TTEEEEEESSEEEEEESSST---SEEEEEE-TTS--
T ss_pred EcC-CceEEEEEecccCCcchhhhhhccCCCCCCCeEEEEcC--CCeEEEEecCeEEEEECCCC---eEEEEEeCCCCCe
Confidence 554 444455442 233332221 11 2233333333 55566566667899987665 33333322 3444
Q ss_pred eEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE-Eec-----cCCCCeeEEEEeC
Q 003236 771 FHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLS-----AHDKLVSSLAAST 819 (837)
Q Consensus 771 I~sv~fspdg~~L~sgs~dg~I~IwDl~s~~~~-~l~-----~h~~~V~sla~sp 819 (837)
|..++.. +..++++..++.+.++.+...... ... .....|.|+...|
T Consensus 451 I~~a~~~--~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eis~l~i~p 503 (504)
T PF10433_consen 451 IVAASIN--DPQVLVALSGGELVYFELDDNKISVSDNDETILELDNEISCLSIEP 503 (504)
T ss_dssp -SEEEES--SSEEEEEE-TTEEEEEEEETTEEEEEEE----EE-SS-EEEEE---
T ss_pred EEEEEEC--CCEEEEEEeCCcEEEEEEECCceeeeeeccccccCCCceEEEEeCC
Confidence 4444444 356888888888999988777664 211 2567888888776
|
... |
| >PLN02193 nitrile-specifier protein | Back alignment and domain information |
|---|
Probab=93.52 E-value=19 Score=42.03 Aligned_cols=174 Identities=7% Similarity=-0.033 Sum_probs=81.0
Q ss_pred CeEEEEEeCC-------CcEEEEECCCCeeeeEEe---cCC--CeeEEEEecCCCEEEEEEcC-----CeEEEEECCCCe
Q 003236 653 EDLLCSCDNN-------SEIRYWSINNGSCAGVFK---CQS--GATQMRFQPRLGRILAAAIE-----NYISILDVETQV 715 (837)
Q Consensus 653 ~~llasgs~D-------g~I~vwDl~t~~~i~~~~---~~~--~i~sl~~sp~g~~llags~d-----g~I~iwDl~s~~ 715 (837)
+.+++.|+.+ ..+.+||+.+.+-...-. .+. ........-++..++.|+.+ +.+.+||+.+.+
T Consensus 176 ~~iyv~GG~~~~~~~~~~~v~~yD~~~~~W~~~~~~g~~P~~~~~~~~~v~~~~~lYvfGG~~~~~~~ndv~~yD~~t~~ 255 (470)
T PLN02193 176 NKIYSFGGEFTPNQPIDKHLYVFDLETRTWSISPATGDVPHLSCLGVRMVSIGSTLYVFGGRDASRQYNGFYSFDTTTNE 255 (470)
T ss_pred CEEEEECCcCCCCCCeeCcEEEEECCCCEEEeCCCCCCCCCCcccceEEEEECCEEEEECCCCCCCCCccEEEEECCCCE
Confidence 4566666642 247788888755332111 011 11111222344555555543 468899988754
Q ss_pred EEE--EEc--CCCCCEEEEEEcCCCCEEEEEe-CC-----eEEEEEcCCCCCceeEEEe---ecCCCceEEEEEeCCCCE
Q 003236 716 CRL--KLQ--GHKNQVHSVCWNTSGEYLASVS-DE-----LVRVWSIGSGSKGECIHEL---SCTGNKFHSCVFHPTFPS 782 (837)
Q Consensus 716 ~~~--~l~--~h~~~V~sl~~spdg~~Lasgs-Dg-----~I~IwDl~s~~~~~~i~~~---~~~~~~I~sv~fspdg~~ 782 (837)
-.. ... .....-.+++. -++++++.|+ ++ .+.+||+.+.. ...+... ...... ..++. -+++.
T Consensus 256 W~~l~~~~~~P~~R~~h~~~~-~~~~iYv~GG~~~~~~~~~~~~yd~~t~~-W~~~~~~~~~~~~R~~-~~~~~-~~gki 331 (470)
T PLN02193 256 WKLLTPVEEGPTPRSFHSMAA-DEENVYVFGGVSATARLKTLDSYNIVDKK-WFHCSTPGDSFSIRGG-AGLEV-VQGKV 331 (470)
T ss_pred EEEcCcCCCCCCCccceEEEE-ECCEEEEECCCCCCCCcceEEEEECCCCE-EEeCCCCCCCCCCCCC-cEEEE-ECCcE
Confidence 322 111 01111122222 2455555554 32 46778876642 1111100 000111 12222 25566
Q ss_pred EEEEEcC----CeEEEEECCCCcEEEeccC----CCCeeEEEEeCCCCEEEEEECC
Q 003236 783 LLVIGCY----ETLELWNMTENKTLTLSAH----DKLVSSLAASTVNGMVASASHD 830 (837)
Q Consensus 783 L~sgs~d----g~I~IwDl~s~~~~~l~~h----~~~V~sla~spdg~~LaSgs~D 830 (837)
+++++.+ ..|.+||+.+.+...+... .......+..-++++++.|+.+
T Consensus 332 yviGG~~g~~~~dv~~yD~~t~~W~~~~~~g~~P~~R~~~~~~~~~~~iyv~GG~~ 387 (470)
T PLN02193 332 WVVYGFNGCEVDDVHYYDPVQDKWTQVETFGVRPSERSVFASAAVGKHIVIFGGEI 387 (470)
T ss_pred EEEECCCCCccCceEEEECCCCEEEEeccCCCCCCCcceeEEEEECCEEEEECCcc
Confidence 6666655 4689999998877654322 1111112223356777777753
|
|
| >TIGR01063 gyrA DNA gyrase, A subunit | Back alignment and domain information |
|---|
Probab=93.50 E-value=26 Score=43.64 Aligned_cols=261 Identities=11% Similarity=0.065 Sum_probs=135.4
Q ss_pred EEEcCCCCEEEEEECCCcEEEEeCCCCeE---------EEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCC---
Q 003236 561 CHFSPDGKLLATGGHDKKAVLWCTESFTV---------KSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTEN--- 628 (837)
Q Consensus 561 l~fSpdg~~Lasgs~Dg~I~VWd~~t~~~---------~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~--- 628 (837)
-.+.++...+++-+.+|.|+-.+..+... ...++. .+.+..+........|+..+.+|.+...+...
T Consensus 490 edli~~e~~~vllS~~GyIKri~~~~~~~~~~~~~g~s~~klKe-~D~l~~~~~~~t~d~LllfTs~Grv~~l~~~~IP~ 568 (800)
T TIGR01063 490 EDLIARENVVVTLSHNGYVKRVPVSAYRLQKRGGKGVSGADMKD-DDFIEQLLVASTHDYLLFFTNRGKVYWLKVYQIPE 568 (800)
T ss_pred hhccCcceEEEEEcCCCEEEecchhhhhhhcccCcCccccccCC-CCeeEEEEEecCCCeEEEEeCCCcEEEEEhhhCcC
Confidence 34456667788888999988876544321 112222 34455555555666677777788776665432
Q ss_pred CC-----cee---EEeeccccceEEEEEcC-CCCeEEEEEeCCCcEEEEECCCCee-------eeEEecCCCeeEEEEec
Q 003236 629 PD-----YSL---RTFTGHSTTVMSLDFHP-SKEDLLCSCDNNSEIRYWSINNGSC-------AGVFKCQSGATQMRFQP 692 (837)
Q Consensus 629 ~~-----~~~---~~~~~h~~~V~sl~fsp-dg~~llasgs~Dg~I~vwDl~t~~~-------i~~~~~~~~i~sl~~sp 692 (837)
.. ..+ ..+.....-|.++.+.. +...+++..+.+|.++-.++..... ...+.....+..+....
T Consensus 569 ~~r~~~G~~i~~ll~L~~~E~Iv~~i~~~~~~~~~~lvliT~~GyiKRi~l~~~~~~~r~G~~aiklke~D~lv~v~~~~ 648 (800)
T TIGR01063 569 ASRTAKGKPIVNLLPLQPDERITAILSVKEFDDGLYLFFATKNGVVKKTSLTEFSNIRSNGIIAIKLDDGDELISVRLTS 648 (800)
T ss_pred CCcCCCCcCHHHhccCCCCCeEEEEEEeccCCCCCEEEEEeCCCEEEEEEhHHhhhhccCCcccccCCCCCEEEEEEEeC
Confidence 11 011 11222223344455332 1223566777899999887654221 11222234455555555
Q ss_pred CCCEEEEEEcCCeEEEEECCC---------CeEEEEEcCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCC------
Q 003236 693 RLGRILAAAIENYISILDVET---------QVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGS------ 756 (837)
Q Consensus 693 ~g~~llags~dg~I~iwDl~s---------~~~~~~l~~h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~------ 756 (837)
....++..+..|.+..+.+.. |.....+. ....|.++....++.+++..+ .|.++...+..-.
T Consensus 649 ~~d~lll~Ts~Gr~~r~~v~eIp~~gr~~~Gv~~i~L~-~~E~Vv~~~~v~~~~~ll~vT~~G~~Kr~~l~e~~~~~R~~ 727 (800)
T TIGR01063 649 GDDEVMLGSKNGKAVRFPEEDVRPMGRAARGVRGIKLK-NEDFVVSLLVVSEESYLLIVTENGYGKRTSIEEYRETSRGG 727 (800)
T ss_pred CCCEEEEEECCCcEEEEEhhhcCCcCCCCCCeecccCC-CCCEEEEEEEeccccEEEEEecCCcEEEEEHHHccccCCCC
Confidence 556788888888777665432 22222232 223455554444444455555 8877777654211
Q ss_pred CceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEEEeccCCCCeeEEEEeCCCCEEEE
Q 003236 757 KGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVAS 826 (837)
Q Consensus 757 ~~~~i~~~~~~~~~I~sv~fspdg~~L~sgs~dg~I~IwDl~s~~~~~l~~h~~~V~sla~spdg~~LaS 826 (837)
.......+......+..+....+...++..+.+|.+..++...-... ..-...|..+.... +..++.
T Consensus 728 kGv~~ikl~~~~d~lv~~~~v~~~~~v~liT~~G~~lrf~~~eI~~~--gR~a~GVk~i~L~~-~D~vv~ 794 (800)
T TIGR01063 728 KGVKSIKITDRNGQVVGAIAVDDDDELMLITSAGKLIRTSVQDVSEQ--GRNTQGVRLIRLDE-DDKLVS 794 (800)
T ss_pred cceEEEEccCCCCeEEEEEEecCCCeEEEEecCCeEEEeeHhhCCcc--ccCCCCeeeeeeCC-CCEEEE
Confidence 11222223333344555444445556888888888777776542221 12233466666643 334443
|
This model describes the common type II DNA topoisomerase (DNA gyrase). Two apparently independently arising families, one in the Proteobacteria and one in Gram-positive lineages, are both designated toposisomerase IV. |
| >COG1506 DAP2 Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=93.39 E-value=24 Score=42.79 Aligned_cols=147 Identities=18% Similarity=0.165 Sum_probs=82.2
Q ss_pred ecCCCCCeEEEEEcCCCCEEEEEECCCc----EEEEeCCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeC------CCe
Q 003236 551 IPASTSKVESCHFSPDGKLLATGGHDKK----AVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA------DRT 620 (837)
Q Consensus 551 l~~H~~~V~sl~fSpdg~~Lasgs~Dg~----I~VWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~------Dg~ 620 (837)
...+...+..+.|+|||..++..+.++. +++.+.. + .+..+...|....|++++..++.... |+.
T Consensus 55 ~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~l~l~~~~-g----~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~~~~~ 129 (620)
T COG1506 55 LLTFGGGVSELRWSPDGSVLAFVSTDGGRVAQLYLVDVG-G----LITKTAFGVSDARWSPDGDRIAFLTAEGASKRDGG 129 (620)
T ss_pred ccccCCcccccccCCCCCEEEEEeccCCCcceEEEEecC-C----ceeeeecccccceeCCCCCeEEEEecccccccCCc
Confidence 3456677889999999999988874332 3333433 2 33445667888899998888777211 222
Q ss_pred -------EEEEEcCCC-Cc----------eeEEeeccccceEEEEEcCCCCeEEEEEeCC---C---cEEEEECCCCeee
Q 003236 621 -------VRVWDTENP-DY----------SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN---S---EIRYWSINNGSCA 676 (837)
Q Consensus 621 -------I~IWDl~~~-~~----------~~~~~~~h~~~V~sl~fspdg~~llasgs~D---g---~I~vwDl~t~~~i 676 (837)
+.+|....+ .. ...........+....+++++..++.+...+ . ...++...++...
T Consensus 130 ~~~~~~~~~~~~~~~g~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (620)
T COG1506 130 DHLFVDRLPVWFDGRGGERSDLYVVDIESKLIKLGLGNLDVVSFATDGDGRLVASIRLDDDADPWVTNLYVLIEGNGELE 209 (620)
T ss_pred eeeeecccceeecCCCCcccceEEEccCcccccccCCCCceeeeeeCCCCceeEEeeeccccCCceEeeEEEecCCCceE
Confidence 333433322 11 1112223344566666666555444332222 1 2233333455555
Q ss_pred eEEecCCCeeEEEEecCCCEEEEEEc
Q 003236 677 GVFKCQSGATQMRFQPRLGRILAAAI 702 (837)
Q Consensus 677 ~~~~~~~~i~sl~~sp~g~~llags~ 702 (837)
........+..+.+.++++.++..+.
T Consensus 210 ~~~~~~~~~~~~~~~~~gk~~~~~~~ 235 (620)
T COG1506 210 SLTPGEGSISKLAFDADGKSIALLGT 235 (620)
T ss_pred EEcCCCceeeeeeeCCCCCeeEEecc
Confidence 55555566888889998886555443
|
|
| >PRK14131 N-acetylneuraminic acid mutarotase; Provisional | Back alignment and domain information |
|---|
Probab=93.37 E-value=9 Score=43.20 Aligned_cols=14 Identities=7% Similarity=0.135 Sum_probs=9.7
Q ss_pred cEEEEECCCCeeee
Q 003236 664 EIRYWSINNGSCAG 677 (837)
Q Consensus 664 ~I~vwDl~t~~~i~ 677 (837)
.|.+||..+.+-..
T Consensus 190 ~v~~YD~~t~~W~~ 203 (376)
T PRK14131 190 EVLSYDPSTNQWKN 203 (376)
T ss_pred eEEEEECCCCeeeE
Confidence 58889987765443
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=93.37 E-value=8.7 Score=45.84 Aligned_cols=181 Identities=12% Similarity=0.045 Sum_probs=87.5
Q ss_pred CcEEEEeCCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCcee--EEeeccccceEEEEEcCCCCe
Q 003236 577 KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSL--RTFTGHSTTVMSLDFHPSKED 654 (837)
Q Consensus 577 g~I~VWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~~~~~~--~~~~~h~~~V~sl~fspdg~~ 654 (837)
-.|+||++. |..+..+.-....+..+.|+.+. .|++...||+++||++....... ..+......|..+.|..+|
T Consensus 64 ~~I~If~~s-G~lL~~~~w~~~~lI~mgWs~~e-eLI~v~k~g~v~Vy~~~ge~ie~~svg~e~~~~~I~ec~~f~~G-- 139 (829)
T KOG2280|consen 64 PYIRIFNIS-GQLLGRILWKHGELIGMGWSDDE-ELICVQKDGTVHVYGLLGEFIESNSVGFESQMSDIVECRFFHNG-- 139 (829)
T ss_pred eeEEEEecc-ccchHHHHhcCCCeeeecccCCc-eEEEEeccceEEEeecchhhhcccccccccccCceeEEEEecCc--
Confidence 458888854 45554443333478899999765 46666799999999987533211 1112222334444444443
Q ss_pred EEEEEeCCCcEEEEECCCCeeeeEEec-C-CCe--eEEEEecCCC---EEEEEEcCCeEEEEECCCC-eEEEEEcCCCCC
Q 003236 655 LLCSCDNNSEIRYWSINNGSCAGVFKC-Q-SGA--TQMRFQPRLG---RILAAAIENYISILDVETQ-VCRLKLQGHKNQ 726 (837)
Q Consensus 655 llasgs~Dg~I~vwDl~t~~~i~~~~~-~-~~i--~sl~~sp~g~---~llags~dg~I~iwDl~s~-~~~~~l~~h~~~ 726 (837)
+++-. .+|.|.+.+-.....++.... + ... .|-...+++. .++.....-...++-.+.. .....+......
T Consensus 140 Vavlt-~~g~v~~i~~~~~~~~~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~~~~~q~~~~~~q~~~~~~~~~~ 218 (829)
T KOG2280|consen 140 VAVLT-VSGQVILINGVEEPKLRKMPDIPYNELPKSCWTVFQPHRQSTILLDVDVAVGLHICQVEESRVQLHALSWPNSS 218 (829)
T ss_pred eEEEe-cCCcEEEEcCCCcchhhhCCCCCCccCCCcceeEecCCCcceeEEeechhhhhcccceecccccccccCCCCce
Confidence 23222 244444332221211222211 1 111 2222222211 1111110000111111111 111122222356
Q ss_pred EEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEee
Q 003236 727 VHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELS 765 (837)
Q Consensus 727 V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~ 765 (837)
+..+..||+..+|+.-. +|.|.+-+++.. .++.++.
T Consensus 219 ~~ki~VS~n~~~laLyt~~G~i~~vs~D~~---~~lce~~ 255 (829)
T KOG2280|consen 219 VVKISVSPNRRFLALYTETGKIWVVSIDLS---QILCEFN 255 (829)
T ss_pred EEEEEEcCCcceEEEEecCCcEEEEecchh---hhhhccC
Confidence 77889999999999877 888888887665 4444444
|
|
| >PF14727 PHTB1_N: PTHB1 N-terminus | Back alignment and domain information |
|---|
Probab=93.12 E-value=19 Score=41.05 Aligned_cols=267 Identities=11% Similarity=0.107 Sum_probs=131.2
Q ss_pred CCeEEcccCCCceEEeecCCCCCCCCccccccccCCCeeeeEEEEecCCCCCeEEEEEc---C--CCCEEEEEECCCcEE
Q 003236 506 DRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFS---P--DGKLLATGGHDKKAV 580 (837)
Q Consensus 506 ~~~v~~Gs~D~~v~~w~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~H~~~V~sl~fS---p--dg~~Lasgs~Dg~I~ 580 (837)
...+..||..+.++++........... +-.-..-..+|..|..- + +...||+ -.-.++.
T Consensus 37 ~d~IivGS~~G~LrIy~P~~~~~~~~~---------------lllE~~l~~PILqv~~G~F~s~~~~~~LaV-LhP~kl~ 100 (418)
T PF14727_consen 37 SDKIIVGSYSGILRIYDPSGNEFQPED---------------LLLETQLKDPILQVECGKFVSGSEDLQLAV-LHPRKLS 100 (418)
T ss_pred ccEEEEeccccEEEEEccCCCCCCCcc---------------EEEEEecCCcEEEEEeccccCCCCcceEEE-ecCCEEE
Confidence 357788999999999977443211100 11111223456666543 2 2224444 4567788
Q ss_pred EEeCCC--Ce-------EEEEeccCC--CCeEEEEEcC----C-CCEEEEEeCCCeEEEEEcCCCCceeEEeeccccceE
Q 003236 581 LWCTES--FT-------VKSTLEEHT--QWITDVRFSP----S-LSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVM 644 (837)
Q Consensus 581 VWd~~t--~~-------~~~~l~~h~--~~I~~l~fsp----d-g~~Latgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~ 644 (837)
||.+.. +. .+..+..|. .....+++-| . ..+|++-+.||.+.+|+-+.-. ...+...---.-
T Consensus 101 vY~v~~~~g~~~~g~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~--f~~~lp~~llPg 178 (418)
T PF14727_consen 101 VYSVSLVDGTVEHGNQYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFA--FSRFLPDFLLPG 178 (418)
T ss_pred EEEEEecCCCcccCcEEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEE--EEEEcCCCCCCc
Confidence 887621 11 112222232 2223333332 2 3678999999999999987522 222222223334
Q ss_pred EEEEcCCCCeEEEEEeCCCcEEEEECCC--------------------C---eeeeEEecCCCeeEEEEec---CCCEEE
Q 003236 645 SLDFHPSKEDLLCSCDNNSEIRYWSINN--------------------G---SCAGVFKCQSGATQMRFQP---RLGRIL 698 (837)
Q Consensus 645 sl~fspdg~~llasgs~Dg~I~vwDl~t--------------------~---~~i~~~~~~~~i~sl~~sp---~g~~ll 698 (837)
.++|.+..+ .|++++.+..|..|.... + ...+.+.....+..+.... ....|+
T Consensus 179 Pl~Y~~~tD-sfvt~sss~~l~~Yky~~La~~s~~~~~~~~~~~~~~~~k~l~~dWs~nlGE~~l~i~v~~~~~~~~~Iv 257 (418)
T PF14727_consen 179 PLCYCPRTD-SFVTASSSWTLECYKYQDLASASEASSRQSGTEQDISSGKKLNPDWSFNLGEQALDIQVVRFSSSESDIV 257 (418)
T ss_pred CeEEeecCC-EEEEecCceeEEEecHHHhhhccccccccccccccccccccccceeEEECCceeEEEEEEEcCCCCceEE
Confidence 567777655 445777677888775421 1 1223344445555544433 333344
Q ss_pred EEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEE-E----cCCCC----EEEEEeCCeEEEEEcCCCCCceeEEEeecCCC
Q 003236 699 AAAIENYISILDVETQVCRLKLQGHKNQVHSVC-W----NTSGE----YLASVSDELVRVWSIGSGSKGECIHELSCTGN 769 (837)
Q Consensus 699 ags~dg~I~iwDl~s~~~~~~l~~h~~~V~sl~-~----spdg~----~LasgsDg~I~IwDl~s~~~~~~i~~~~~~~~ 769 (837)
+-+ +..+.+++.. |......+ .+....|++ | ..++. +++++.++.+.||.=. ..+........
T Consensus 258 vLg-er~Lf~l~~~-G~l~~~kr-Ld~~p~~~~~Y~~~~~~~~~~~~~llV~t~t~~LlVy~d~-----~L~WsA~l~~~ 329 (418)
T PF14727_consen 258 VLG-ERSLFCLKDN-GSLRFQKR-LDYNPSCFCPYRVPWYNEPSTRLNLLVGTHTGTLLVYEDT-----TLVWSAQLPHV 329 (418)
T ss_pred EEe-cceEEEEcCC-CeEEEEEe-cCCceeeEEEEEeecccCCCCceEEEEEecCCeEEEEeCC-----eEEEecCCCCC
Confidence 443 3555555553 44333333 222222222 2 11222 4444448899988532 22222222122
Q ss_pred c--eEEEEEeCCCCEEEEEEcCCeEEEEECCC
Q 003236 770 K--FHSCVFHPTFPSLLVIGCYETLELWNMTE 799 (837)
Q Consensus 770 ~--I~sv~fspdg~~L~sgs~dg~I~IwDl~s 799 (837)
+ +..+.|..-...|++-+.+|.|.+-=+-+
T Consensus 330 PVal~v~~~~~~~G~IV~Ls~~G~L~v~YLGT 361 (418)
T PF14727_consen 330 PVALSVANFNGLKGLIVSLSDEGQLSVSYLGT 361 (418)
T ss_pred CEEEEecccCCCCceEEEEcCCCcEEEEEeCC
Confidence 2 22233333445677777788777654433
|
|
| >COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=93.09 E-value=3.3 Score=42.05 Aligned_cols=176 Identities=13% Similarity=0.071 Sum_probs=100.0
Q ss_pred CCCEEEEEeC--CCeEEEEEcCCCCceeEEeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeeEEecCCCe
Q 003236 608 SLSRLATSSA--DRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGA 685 (837)
Q Consensus 608 dg~~Latgs~--Dg~I~IWDl~~~~~~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~~~~i 685 (837)
++.++.+.+. ...|++||+.+++........ ...+..=-...-++.+..-.-.+|.-..+|.++.+++..+...+.-
T Consensus 55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~-~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~~lg~~~y~GeG 133 (262)
T COG3823 55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLA-PDTVFGEGITKLGDYFYQLTWKEGVAFKYDADTLEELGRFSYEGEG 133 (262)
T ss_pred CCEEEEeccccccceeEEEeccCceEEEEeecC-CccccccceeeccceEEEEEeccceeEEEChHHhhhhcccccCCcc
Confidence 4555655554 347999999987753332222 1122211112223445555667888999999999999988877766
Q ss_pred eEEEEecCCCEEEEEEcCCeEEEEECCCCeEEE----EEcC-CCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCce
Q 003236 686 TQMRFQPRLGRILAAAIENYISILDVETQVCRL----KLQG-HKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGE 759 (837)
Q Consensus 686 ~sl~~sp~g~~llags~dg~I~iwDl~s~~~~~----~l~~-h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~ 759 (837)
..++. ++..++.+.....+..-|.++-.... ++.+ .-..++.+.|- +|.+.+-.- +..|...|..+++...
T Consensus 134 WgLt~--d~~~LimsdGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~V-dG~lyANVw~t~~I~rI~p~sGrV~~ 210 (262)
T COG3823 134 WGLTS--DDKNLIMSDGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEWV-DGELYANVWQTTRIARIDPDSGRVVA 210 (262)
T ss_pred eeeec--CCcceEeeCCceEEEecCHHHhhhcceEEEEECCeecccccceeee-ccEEEEeeeeecceEEEcCCCCcEEE
Confidence 66554 45567777777788887876543322 2222 11223344443 555555444 5555555665552211
Q ss_pred eE---------EEeecCCCceEEEEEeCCCCEEEEEE
Q 003236 760 CI---------HELSCTGNKFHSCVFHPTFPSLLVIG 787 (837)
Q Consensus 760 ~i---------~~~~~~~~~I~sv~fspdg~~L~sgs 787 (837)
.+ .....+.+..+.+++.|++..|+..+
T Consensus 211 widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTG 247 (262)
T COG3823 211 WIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITG 247 (262)
T ss_pred EEEccCCchhcCccccccccccceeecCcCCeEEEec
Confidence 11 11122345678889999886555544
|
|
| >PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal | Back alignment and domain information |
|---|
Probab=93.09 E-value=2.7 Score=39.70 Aligned_cols=118 Identities=12% Similarity=0.055 Sum_probs=76.8
Q ss_pred EEEEcCCCCEEEEEeCCCeEEEEEcCCCCce------eEEeeccccceEEEEEcC----CCCeEEEEEeCCCcEEEEECC
Q 003236 602 DVRFSPSLSRLATSSADRTVRVWDTENPDYS------LRTFTGHSTTVMSLDFHP----SKEDLLCSCDNNSEIRYWSIN 671 (837)
Q Consensus 602 ~l~fspdg~~Latgs~Dg~I~IWDl~~~~~~------~~~~~~h~~~V~sl~fsp----dg~~llasgs~Dg~I~vwDl~ 671 (837)
.-+|......|+.++.-|.|.|++....... -..+......|++|+-.+ ++..+|+.|+ ...|..||+.
T Consensus 3 iGkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LNin~~italaaG~l~~~~~~D~LliGt-~t~llaYDV~ 81 (136)
T PF14781_consen 3 IGKFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLNINQEITALAAGRLKPDDGRDCLLIGT-QTSLLAYDVE 81 (136)
T ss_pred EEEeCCCceeEEEEecCCEEEEECCCccccccccccCceeEEECCCceEEEEEEecCCCCCcCEEEEec-cceEEEEEcc
Confidence 3456666667888888999999987643211 112233456777776443 2345666666 5679999999
Q ss_pred CCeeeeEEecCCCeeEEEEecC---CCEEEEEEcCCeEEEEECCCCeEEEEE
Q 003236 672 NGSCAGVFKCQSGATQMRFQPR---LGRILAAAIENYISILDVETQVCRLKL 720 (837)
Q Consensus 672 t~~~i~~~~~~~~i~sl~~sp~---g~~llags~dg~I~iwDl~s~~~~~~l 720 (837)
...-+.......++.++.+-.- ..-++..+.+..|.-||.+-.+...+.
T Consensus 82 ~N~d~Fyke~~DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~G~e~fWtV 133 (136)
T PF14781_consen 82 NNSDLFYKEVPDGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDYEGNEIFWTV 133 (136)
T ss_pred cCchhhhhhCccceeEEEEEecCCCCCcEEEECceEEEEEeCCCCcEEEEEe
Confidence 8887777777788888877432 234566666677777777655555443
|
|
| >PF11498 Activator_LAG-3: Transcriptional activator LAG-3; InterPro: IPR021587 The C | Back alignment and domain information |
|---|
Probab=93.06 E-value=0.027 Score=59.83 Aligned_cols=14 Identities=36% Similarity=0.572 Sum_probs=0.0
Q ss_pred HHhhhcccccCCCC
Q 003236 121 QQQQRRDSTQHLND 134 (837)
Q Consensus 121 qq~q~~~~~~~~~~ 134 (837)
||+++..+.+++||
T Consensus 371 QQ~qQ~qQq~qmng 384 (468)
T PF11498_consen 371 QQQQQQQQQHQMNG 384 (468)
T ss_dssp --------------
T ss_pred HHHHhhhhhhhccc
Confidence 34444455556776
|
elegans Notch pathway, involved in the control of growth, differentiation and patterning in animal development, relies on either of the receptors GLP-1 or LIN-12 []. Both these receptors promote signalling by the recruitment of LAG-3 to target promoters, where it then acts as a transcriptional activator. LAG-3 works as a ternary complex together with the DNA binding protein, LAG-1 []. ; PDB: 2FO1_D. |
| >KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.99 E-value=0.055 Score=64.21 Aligned_cols=96 Identities=14% Similarity=0.166 Sum_probs=55.6
Q ss_pred CCcEEEEeCCCCeE-EEEeccCCCCeEEEEEcC-CCCEEEEEeCCCeEEEEEcCC--CC----ceeEEeeccccceEEEE
Q 003236 576 DKKAVLWCTESFTV-KSTLEEHTQWITDVRFSP-SLSRLATSSADRTVRVWDTEN--PD----YSLRTFTGHSTTVMSLD 647 (837)
Q Consensus 576 Dg~I~VWd~~t~~~-~~~l~~h~~~I~~l~fsp-dg~~Latgs~Dg~I~IWDl~~--~~----~~~~~~~~h~~~V~sl~ 647 (837)
.+.|++-+..+.-. -..+++..+.|..+.|-. +...++ -.-|.+.|||++- ++ ..++........+.-+.
T Consensus 110 ~~~vrvaN~~~sm~~~~l~kgf~G~v~dl~fah~~~pk~~--~~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~ 187 (1283)
T KOG1916|consen 110 ENGVRVANQEPSMRHNELAKGFPGGVGDLQFAHTKCPKGR--RLVGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVS 187 (1283)
T ss_pred hhhhhhccCcchhHHHHHHhcCCCCcccccccccCChHHH--HHhhhhheeehHhhccccccceEEeecCcCCCCcceee
Confidence 45677776554321 133567788888888854 222222 2346788998763 22 22344444445555566
Q ss_pred EcCC--CCeEEEEEeCCCcEEEEECCCC
Q 003236 648 FHPS--KEDLLCSCDNNSEIRYWSINNG 673 (837)
Q Consensus 648 fspd--g~~llasgs~Dg~I~vwDl~t~ 673 (837)
|.|- ....++.+..+++|++..+.+.
T Consensus 188 wcp~~~~~~~ic~~~~~~~i~lL~~~ra 215 (1283)
T KOG1916|consen 188 WCPIAVNKVYICYGLKGGEIRLLNINRA 215 (1283)
T ss_pred ecccccccceeeeccCCCceeEeeechH
Confidence 6652 2346667777888888776643
|
|
| >smart00036 CNH Domain found in NIK1-like kinases, mouse citron and yeast ROM1, ROM2 | Back alignment and domain information |
|---|
Probab=92.93 E-value=17 Score=39.78 Aligned_cols=234 Identities=14% Similarity=0.016 Sum_probs=113.3
Q ss_pred CCCEEEEEECCCcEEEEeCCC--CeEEEEeccCCCCeEEEEEcCCCCEEEEEe-CCCeEEEEEcCCCCc-----------
Q 003236 566 DGKLLATGGHDKKAVLWCTES--FTVKSTLEEHTQWITDVRFSPSLSRLATSS-ADRTVRVWDTENPDY----------- 631 (837)
Q Consensus 566 dg~~Lasgs~Dg~I~VWd~~t--~~~~~~l~~h~~~I~~l~fspdg~~Latgs-~Dg~I~IWDl~~~~~----------- 631 (837)
++++|+.|+++|...+ ++.. .+....+ +...|+++...+.-+.|++-+ ....++++++..-..
T Consensus 12 ~~~~lL~GTe~Gly~~-~~~~~~~~~~kl~--~~~~v~q~~v~~~~~lLi~Lsgk~~~L~~~~L~~L~~~~~~~~~~~~~ 88 (302)
T smart00036 12 DGKWLLVGTEEGLYVL-NISDQPGTLEKLI--GRRSVTQIWVLEENNVLLMISGKKPQLYSHPLSALVEKKEALGSARLV 88 (302)
T ss_pred CCcEEEEEeCCceEEE-EcccCCCCeEEec--CcCceEEEEEEhhhCEEEEEeCCcceEEEEEHHHhhhhhhccCCcccc
Confidence 3468999999885544 4554 3344444 456899999998777666654 334599999842111
Q ss_pred ---eeEEeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCC----eeeeEE---e--cCCCeeEEEEecC--CCEE
Q 003236 632 ---SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNG----SCAGVF---K--CQSGATQMRFQPR--LGRI 697 (837)
Q Consensus 632 ---~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~----~~i~~~---~--~~~~i~sl~~sp~--g~~l 697 (837)
.......|......+........+++++....+|.++..... ...+.+ . .+..+..+..++. ...+
T Consensus 89 ~~~~~~~~~~~tkGc~~~~v~~~~~~~~l~~A~~~~i~l~~~~~~~~~f~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~l 168 (302)
T smart00036 89 IRKNVLTKIPDTKGCHLCAVVNGKRSLFLCVALQSSVVLLQWYNPLKKFKLFKSKFLFPLISPVPVFVELVSSSFERPGI 168 (302)
T ss_pred ccccceEeCCcCCceEEEEEEcCCCcEEEEEEcCCeEEEEEccChhhhhhhhcccccccCCCCccceEeeecccccceEE
Confidence 011122344333333333222223334444566666544321 112111 1 1222333333332 3466
Q ss_pred EEEEcCCeEEEEECCC--CeE-----EEEEcCCCCCEEEEEEcCCCCEEEEEeCCeEEEEEcCCCCCceeEEEeecCCCc
Q 003236 698 LAAAIENYISILDVET--QVC-----RLKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCTGNK 770 (837)
Q Consensus 698 lags~dg~I~iwDl~s--~~~-----~~~l~~h~~~V~sl~~spdg~~LasgsDg~I~IwDl~s~~~~~~i~~~~~~~~~ 770 (837)
.+|+..+...++++.. ... -...........++..-+++.+|+ +-|....+.|...... .....+. -...
T Consensus 169 cvG~~~~~~~~~~~~~~~~~~~d~sl~~~~~~~~~~p~~i~~l~~~e~Ll-c~~~~~v~Vn~~G~~~-~r~~~l~-w~~~ 245 (302)
T smart00036 169 CIGSDKGGGDVVQFHESLVSKEDLSLPFLSEETSLKPISVVQVPRDEFLL-CYDEFGVFVNLYGKRR-SRNPILH-WEFM 245 (302)
T ss_pred EEEEcCCCCeEEEEeecccccccccccccccccccCceEEEEECCCeEEE-EECcEEEEEeCCCCcc-ccceEEE-cCCc
Confidence 6776653344444422 100 000111110233333344555554 4455555556543111 1111111 2344
Q ss_pred eEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEEEeccC
Q 003236 771 FHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSAH 808 (837)
Q Consensus 771 I~sv~fspdg~~L~sgs~dg~I~IwDl~s~~~~~l~~h 808 (837)
..++++.. ++|++... ..|.|+++.+++.+....+
T Consensus 246 p~~~~~~~--pyll~~~~-~~ievr~l~~~~l~q~i~~ 280 (302)
T smart00036 246 PESFAYHS--PYLLAFHD-NGIEIRSIKTGELLQELAD 280 (302)
T ss_pred ccEEEEEC--CEEEEEcC-CcEEEEECCCCceEEEEec
Confidence 56677763 56776654 4599999999987754443
|
Unpublished observations. |
| >PF10433 MMS1_N: Mono-functional DNA-alkylating methyl methanesulfonate N-term; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 2B5N_C 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A | Back alignment and domain information |
|---|
Probab=92.88 E-value=24 Score=41.47 Aligned_cols=225 Identities=13% Similarity=0.128 Sum_probs=111.4
Q ss_pred cCCCCEEEEEeCCCeEEEEEcCCCCc-eeEEeecc-ccceEEEEEcCCCCeEEEEEeC--CCcEEEEECCCCeeeeEEec
Q 003236 606 SPSLSRLATSSADRTVRVWDTENPDY-SLRTFTGH-STTVMSLDFHPSKEDLLCSCDN--NSEIRYWSINNGSCAGVFKC 681 (837)
Q Consensus 606 spdg~~Latgs~Dg~I~IWDl~~~~~-~~~~~~~h-~~~V~sl~fspdg~~llasgs~--Dg~I~vwDl~t~~~i~~~~~ 681 (837)
..++..++.+..+|.++...+..... ......+. .....++++..++..+++.|+. |+.+..|....-+.+..+..
T Consensus 219 ~~~~~~~lL~~e~G~l~~l~l~~~~~~i~i~~~g~~~~~~s~l~~l~~g~d~lf~gs~~gds~l~~~~~~~l~~~~~~~N 298 (504)
T PF10433_consen 219 DKDGDRILLQDEDGDLYLLTLDNDGGSISITYLGTLCSIASSLTYLKNGGDYLFVGSEFGDSQLLQISLSNLEVLDSLPN 298 (504)
T ss_dssp STTSSEEEEEETTSEEEEEEEEEEEEEEEEEEEEE--S-ESEEEEESTT--EEEEEESSS-EEEEEEESESEEEEEEE--
T ss_pred cCCCCEEEEEeCCCeEEEEEEEECCCeEEEEEcCCcCChhheEEEEcCCCEEEEEEEecCCcEEEEEeCCCcEEEEeccC
Confidence 34677899999999999988775431 12222223 5566778887766335555554 55666666555666677777
Q ss_pred CCCeeEEEEecC----CC------EEEEEEc---CCeEEEEECCCCeE--EEEEcCCCCCEEEE---EEcC-CCCEEEEE
Q 003236 682 QSGATQMRFQPR----LG------RILAAAI---ENYISILDVETQVC--RLKLQGHKNQVHSV---CWNT-SGEYLASV 742 (837)
Q Consensus 682 ~~~i~sl~~sp~----g~------~llags~---dg~I~iwDl~s~~~--~~~l~~h~~~V~sl---~~sp-dg~~Lasg 742 (837)
-+++..+++.+. .. .+++++. +|.++++.-.-+-. ........+ +..+ .... ++.+|+.+
T Consensus 299 ~~Pi~D~~v~~~~~~~~~~~~~~~~lv~~sG~g~~gsL~~lr~Gi~~~~~~~~~~~l~~-v~~iW~l~~~~~~~~~lv~S 377 (504)
T PF10433_consen 299 WGPIVDFCVVDSSNSGQPSNPSSDQLVACSGAGKRGSLRILRNGIGIEGLELASSELPG-VTGIWTLKLSSSDHSYLVLS 377 (504)
T ss_dssp --SEEEEEEE-TSSSSS-------EEEEEESSGGG-EEEEEEESBEEE--EEEEEEEST-EEEEEEE-SSSSSBSEEEEE
T ss_pred cCCccceEEeccccCCCCcccccceEEEEECcCCCCcEEEEeccCCceeeeeeccCCCC-ceEEEEeeecCCCceEEEEE
Confidence 788988888642 22 6676664 57888874322211 222222222 4443 3222 25677777
Q ss_pred eCCeEEEEEcCCCCCceeEEE-----eecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEEE-e-ccCCCCeeEE
Q 003236 743 SDELVRVWSIGSGSKGECIHE-----LSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLT-L-SAHDKLVSSL 815 (837)
Q Consensus 743 sDg~I~IwDl~s~~~~~~i~~-----~~~~~~~I~sv~fspdg~~L~sgs~dg~I~IwDl~s~~~~~-l-~~h~~~V~sl 815 (837)
....-+|+.+........+.. +......+.+..+. +..++=.... .|++.+...++... + ......|.+.
T Consensus 378 ~~~~T~vl~~~~~d~~e~~~e~~~~~f~~~~~Tl~~~~~~--~~~ivQVt~~-~i~l~~~~~~~~~~~w~~~~~~~I~~a 454 (504)
T PF10433_consen 378 FPNETRVLQISEGDDGEEVEEVEEDGFDTDEPTLAAGNVG--DGRIVQVTPK-GIRLIDLEDGKLTQEWKPPAGSIIVAA 454 (504)
T ss_dssp ESSEEEEEEES----SSEEEEE---TS-SSS-EEEEEEET--TTEEEEEESS-EEEEEESSSTSEEEEEE-TTS---SEE
T ss_pred cCCceEEEEEecccCCcchhhhhhccCCCCCCCeEEEEcC--CCeEEEEecC-eEEEEECCCCeEEEEEeCCCCCeEEEE
Confidence 766667777742111122211 11112222222222 3334433333 58888887777662 2 2344456555
Q ss_pred EEeCCCCEEEEEECCCcEEEe
Q 003236 816 AASTVNGMVASASHDKCVKIW 836 (837)
Q Consensus 816 a~spdg~~LaSgs~DG~I~IW 836 (837)
++. +.+++.+-.++.+.++
T Consensus 455 ~~~--~~~v~v~~~~~~~~~~ 473 (504)
T PF10433_consen 455 SIN--DPQVLVALSGGELVYF 473 (504)
T ss_dssp EES--SSEEEEEE-TTEEEEE
T ss_pred EEC--CCEEEEEEeCCcEEEE
Confidence 554 3556666566666554
|
... |
| >PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length | Back alignment and domain information |
|---|
Probab=92.78 E-value=4.2 Score=48.53 Aligned_cols=111 Identities=11% Similarity=0.149 Sum_probs=68.4
Q ss_pred eeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEc-CCCCCEEEEEEc--CCCCEEEEEe-CCeEEEEEcC-----C-
Q 003236 685 ATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQ-GHKNQVHSVCWN--TSGEYLASVS-DELVRVWSIG-----S- 754 (837)
Q Consensus 685 i~sl~~sp~g~~llags~dg~I~iwDl~s~~~~~~l~-~h~~~V~sl~~s--pdg~~Lasgs-Dg~I~IwDl~-----s- 754 (837)
+..+.-+.-++..++-.....+.|||.+.+....... ...+.|.++.|. |++..+++.+ ...|.+|.-. .
T Consensus 32 ~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~~ 111 (631)
T PF12234_consen 32 PSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTNK 111 (631)
T ss_pred cceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhcC
Confidence 3344444444444444444689999999886544332 357789999995 5777776666 8889988532 1
Q ss_pred CCCceeEEEe---ecCCCceEEEEEeCCCCEEEEEEcCCeEEEEEC
Q 003236 755 GSKGECIHEL---SCTGNKFHSCVFHPTFPSLLVIGCYETLELWNM 797 (837)
Q Consensus 755 ~~~~~~i~~~---~~~~~~I~sv~fspdg~~L~sgs~dg~I~IwDl 797 (837)
+.....+..+ .....+|.+..|.++|..++ |+ ++.+.|+|-
T Consensus 112 ~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV-~s-GNqlfv~dk 155 (631)
T PF12234_consen 112 GPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVV-GS-GNQLFVFDK 155 (631)
T ss_pred CcccceeEEEEeecCCCCCccceeEecCCeEEE-Ee-CCEEEEECC
Confidence 1111233332 22346799999999996333 33 446888874
|
This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits. |
| >PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs | Back alignment and domain information |
|---|
Probab=92.69 E-value=22 Score=43.56 Aligned_cols=94 Identities=14% Similarity=0.171 Sum_probs=54.1
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeEEeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeee
Q 003236 598 QWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAG 677 (837)
Q Consensus 598 ~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~ 677 (837)
-.|..|.++++|++|+..+..| |.|-.+.........+.+....|.|=.+.-+ ..++ ..
T Consensus 85 f~v~~i~~n~~g~~lal~G~~~-v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~-~~~~-~~------------------ 143 (717)
T PF10168_consen 85 FEVHQISLNPTGSLLALVGPRG-VVVLELPRRWGKNGEFEDGKKEINCRTVPVD-ERFF-TS------------------ 143 (717)
T ss_pred eeEEEEEECCCCCEEEEEcCCc-EEEEEeccccCccccccCCCcceeEEEEEec-hhhc-cC------------------
Confidence 3588889999999999888766 4444443211001112222223333222211 1122 11
Q ss_pred EEecCCCeeEEEEecC---CCEEEEEEcCCeEEEEECCCC
Q 003236 678 VFKCQSGATQMRFQPR---LGRILAAAIENYISILDVETQ 714 (837)
Q Consensus 678 ~~~~~~~i~sl~~sp~---g~~llags~dg~I~iwDl~s~ 714 (837)
.....|..+.|+|. +..|++-+.|+.|++||+...
T Consensus 144 --~~~~~i~qv~WhP~s~~~~~l~vLtsdn~lR~y~~~~~ 181 (717)
T PF10168_consen 144 --NSSLEIKQVRWHPWSESDSHLVVLTSDNTLRLYDISDP 181 (717)
T ss_pred --CCCceEEEEEEcCCCCCCCeEEEEecCCEEEEEecCCC
Confidence 11245777888885 578888899999999998653
|
It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells []. |
| >TIGR03547 muta_rot_YjhT mutatrotase, YjhT family | Back alignment and domain information |
|---|
Probab=92.69 E-value=13 Score=41.31 Aligned_cols=40 Identities=13% Similarity=0.175 Sum_probs=22.7
Q ss_pred eEEEEECCCCcEEEeccCCCCe-eEEEEeCCCCEEEEEECC
Q 003236 791 TLELWNMTENKTLTLSAHDKLV-SSLAASTVNGMVASASHD 830 (837)
Q Consensus 791 ~I~IwDl~s~~~~~l~~h~~~V-~sla~spdg~~LaSgs~D 830 (837)
.+.+||..+.+.........+. .+.+..-++++++.|+.+
T Consensus 291 ~~e~yd~~~~~W~~~~~lp~~~~~~~~~~~~~~iyv~GG~~ 331 (346)
T TIGR03547 291 SSEVYALDNGKWSKVGKLPQGLAYGVSVSWNNGVLLIGGEN 331 (346)
T ss_pred EeeEEEecCCcccccCCCCCCceeeEEEEcCCEEEEEeccC
Confidence 4678888776654332222211 222344578888888765
|
Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein. |
| >COG1770 PtrB Protease II [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=92.66 E-value=27 Score=41.53 Aligned_cols=200 Identities=13% Similarity=0.065 Sum_probs=109.8
Q ss_pred CeEEEEEcCCCCEEEEEeC-----CCeEEEEEcCCCCceeEEeeccccceEEEEEcCCCCeEEEEEeCCC----cEEEEE
Q 003236 599 WITDVRFSPSLSRLATSSA-----DRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNS----EIRYWS 669 (837)
Q Consensus 599 ~I~~l~fspdg~~Latgs~-----Dg~I~IWDl~~~~~~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg----~I~vwD 669 (837)
.+-.++.+||.+++|-+-. .-++++-|+.++......+. +...+++|.+|+..++++...++ .|....
T Consensus 130 ~Lg~~~~s~D~~~la~s~D~~G~e~y~lr~kdL~tg~~~~d~i~---~~~~~~~Wa~d~~~lfYt~~d~~~rp~kv~~h~ 206 (682)
T COG1770 130 SLGAASISPDHNLLAYSVDVLGDEQYTLRFKDLATGEELPDEIT---NTSGSFAWAADGKTLFYTRLDENHRPDKVWRHR 206 (682)
T ss_pred eeeeeeeCCCCceEEEEEecccccEEEEEEEecccccccchhhc---ccccceEEecCCCeEEEEEEcCCCCcceEEEEe
Confidence 3556778888888876533 34789999998775333333 35678899999998988877654 233333
Q ss_pred CCC--CeeeeEEecCC--CeeEEEEecCCCEEEEEEcC---CeEEEEECCCCeE--EEEEcCCCCCEEEEEEcCCCCEEE
Q 003236 670 INN--GSCAGVFKCQS--GATQMRFQPRLGRILAAAIE---NYISILDVETQVC--RLKLQGHKNQVHSVCWNTSGEYLA 740 (837)
Q Consensus 670 l~t--~~~i~~~~~~~--~i~sl~~sp~g~~llags~d---g~I~iwDl~s~~~--~~~l~~h~~~V~sl~~spdg~~La 740 (837)
+.+ ..-...+.... -..++.-+....+|+....+ +.+++++...... ........+--..+. ..+.+++
T Consensus 207 ~gt~~~~d~lvyeE~d~~f~~~v~~s~s~~yi~i~~~~~~tsE~~ll~a~~p~~~p~vv~pr~~g~eY~~e--h~~d~f~ 284 (682)
T COG1770 207 LGTPGSSDELVYEEKDDRFFLSVGRSRSEAYIVISLGSHITSEVRLLDADDPEAEPKVVLPRENGVEYSVE--HGGDRFY 284 (682)
T ss_pred cCCCCCcceEEEEcCCCcEEEEeeeccCCceEEEEcCCCcceeEEEEecCCCCCceEEEEEcCCCcEEeee--ecCcEEE
Confidence 333 22222222222 23344445556676666543 5688888775422 222211111111221 1233333
Q ss_pred E-Ee-CC-eEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCC---eEEEEECCCCcEE
Q 003236 741 S-VS-DE-LVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYE---TLELWNMTENKTL 803 (837)
Q Consensus 741 s-gs-Dg-~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fspdg~~L~sgs~dg---~I~IwDl~s~~~~ 803 (837)
. .. +| ..+|+..........-..+..|...+.--.|+--..+|+....++ .|++++..++...
T Consensus 285 i~sN~~gknf~l~~ap~~~~~~~w~~~I~h~~~~~l~~~~~f~~~lVl~eR~~glp~v~v~~~~~~~~~ 353 (682)
T COG1770 285 ILSNADGKNFKLVRAPVSADKSNWRELIPHREDVRLEGVDLFADHLVLLERQEGLPRVVVRDRKTGEER 353 (682)
T ss_pred EEecCCCcceEEEEccCCCChhcCeeeeccCCCceeeeeeeeccEEEEEecccCCceEEEEecCCCcee
Confidence 3 33 55 556665443111122334455666666556666667777776655 7888888776654
|
|
| >PF13449 Phytase-like: Esterase-like activity of phytase | Back alignment and domain information |
|---|
Probab=92.59 E-value=19 Score=39.70 Aligned_cols=143 Identities=12% Similarity=0.166 Sum_probs=82.6
Q ss_pred cceEEEEEcCCCCeEEEEEeCCCc------EEEEECCC--C--eee---eEE--ecC-C--------CeeEEEEecCCCE
Q 003236 641 TTVMSLDFHPSKEDLLCSCDNNSE------IRYWSINN--G--SCA---GVF--KCQ-S--------GATQMRFQPRLGR 696 (837)
Q Consensus 641 ~~V~sl~fspdg~~llasgs~Dg~------I~vwDl~t--~--~~i---~~~--~~~-~--------~i~sl~~sp~g~~ 696 (837)
+.+..|.+.+++..++ +.+.+|. ++.+++.. + ..+ ... ... + ...++++.+++.+
T Consensus 20 GGlSgl~~~~~~~~~~-avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g~~ 98 (326)
T PF13449_consen 20 GGLSGLDYDPDDGRFY-AVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDGSF 98 (326)
T ss_pred CcEeeEEEeCCCCEEE-EEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCCCE
Confidence 5577888886555444 4444665 55555543 1 111 111 111 1 3447888667666
Q ss_pred EEEEEcC------CeEEEEECCCCeEEEEEc---------------CCCCCEEEEEEcCCCCEEEEEe------CC--e-
Q 003236 697 ILAAAIE------NYISILDVETQVCRLKLQ---------------GHKNQVHSVCWNTSGEYLASVS------DE--L- 746 (837)
Q Consensus 697 llags~d------g~I~iwDl~s~~~~~~l~---------------~h~~~V~sl~~spdg~~Lasgs------Dg--~- 746 (837)
+++.-.+ ..|..++.. +.....+. .....+.+|+++|+|..|+++. |+ .
T Consensus 99 ~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E~~l~~d~~~~~ 177 (326)
T PF13449_consen 99 WISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAMESPLKQDGPRAN 177 (326)
T ss_pred EEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEECccccCCCcccc
Confidence 6666666 789999877 54443331 1344688999999999665543 22 2
Q ss_pred ------EEEEEcCCCC----CceeEEEeec-----CCCceEEEEEeCCCCEEEE
Q 003236 747 ------VRVWSIGSGS----KGECIHELSC-----TGNKFHSCVFHPTFPSLLV 785 (837)
Q Consensus 747 ------I~IwDl~s~~----~~~~i~~~~~-----~~~~I~sv~fspdg~~L~s 785 (837)
++|+.+.... .......+.. ....+..+.+.+++++|+.
T Consensus 178 ~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvL 231 (326)
T PF13449_consen 178 PDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVL 231 (326)
T ss_pred cccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEE
Confidence 5565554322 1122333332 4678899999999986654
|
|
| >KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.56 E-value=0.072 Score=63.28 Aligned_cols=116 Identities=10% Similarity=0.137 Sum_probs=68.3
Q ss_pred EecCCCCCeEEEEEcC-CCCEEEEEECCCcEEEEeCC--CCeEE-----EEeccCCCCeEEEEEcC---CCCEEEEEeCC
Q 003236 550 LIPASTSKVESCHFSP-DGKLLATGGHDKKAVLWCTE--SFTVK-----STLEEHTQWITDVRFSP---SLSRLATSSAD 618 (837)
Q Consensus 550 ~l~~H~~~V~sl~fSp-dg~~Lasgs~Dg~I~VWd~~--t~~~~-----~~l~~h~~~I~~l~fsp---dg~~Latgs~D 618 (837)
.+++-.+.|-.+.|-. +...++ -.-|.+.||+++ .|+.. .........+.-|.|+| +..++..+-.+
T Consensus 127 l~kgf~G~v~dl~fah~~~pk~~--~~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~ 204 (1283)
T KOG1916|consen 127 LAKGFPGGVGDLQFAHTKCPKGR--RLVGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLKG 204 (1283)
T ss_pred HHhcCCCCcccccccccCChHHH--HHhhhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccCC
Confidence 3456667777777754 222222 223678899875 33332 22222333445555655 56778888888
Q ss_pred CeEEEEEcCCCCceeEEeeccccceEEEE-----------EcCCCCeEEEEEeCCCcEEEEEC
Q 003236 619 RTVRVWDTENPDYSLRTFTGHSTTVMSLD-----------FHPSKEDLLCSCDNNSEIRYWSI 670 (837)
Q Consensus 619 g~I~IWDl~~~~~~~~~~~~h~~~V~sl~-----------fspdg~~llasgs~Dg~I~vwDl 670 (837)
++|++.+++... ...+.+|...+..++ .+|||. +|+....||.+++|.+
T Consensus 205 ~~i~lL~~~ra~--~~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGt-v~a~a~~dG~v~f~Qi 264 (1283)
T KOG1916|consen 205 GEIRLLNINRAL--RSLFRSHSQRVTDMAFFAEGVLKLASLSPDGT-VFAWAISDGSVGFYQI 264 (1283)
T ss_pred CceeEeeechHH--HHHHHhcCCCcccHHHHhhchhhheeeCCCCc-EEEEeecCCccceeee
Confidence 999998877543 244555776665554 467765 4455566777777654
|
|
| >TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein | Back alignment and domain information |
|---|
Probab=92.47 E-value=11 Score=41.44 Aligned_cols=107 Identities=8% Similarity=0.088 Sum_probs=52.7
Q ss_pred CCCEEEEEECC-----CcEEEEeCCCCeE---EEEeccCCCCe--EEEEEcCCCCEEEEEeC-----CCeEEEEEcCCCC
Q 003236 566 DGKLLATGGHD-----KKAVLWCTESFTV---KSTLEEHTQWI--TDVRFSPSLSRLATSSA-----DRTVRVWDTENPD 630 (837)
Q Consensus 566 dg~~Lasgs~D-----g~I~VWd~~t~~~---~~~l~~h~~~I--~~l~fspdg~~Latgs~-----Dg~I~IWDl~~~~ 630 (837)
++.+++.|+.+ ..+..||+.+.+. ...+..-.... .+++. -++++.+.|+. ...+.+||+.+..
T Consensus 72 ~~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~-~~~~iYv~GG~~~~~~~~~v~~yd~~~~~ 150 (323)
T TIGR03548 72 ENGIYYIGGSNSSERFSSVYRITLDESKEELICETIGNLPFTFENGSACY-KDGTLYVGGGNRNGKPSNKSYLFNLETQE 150 (323)
T ss_pred CCEEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEE-ECCEEEEEeCcCCCccCceEEEEcCCCCC
Confidence 56677777754 3566777766543 12221111111 12222 24566666664 2468888988765
Q ss_pred ceeEE-eeccccceEEEEEcCCCCeEEEEEeCCC----cEEEEECCCCee
Q 003236 631 YSLRT-FTGHSTTVMSLDFHPSKEDLLCSCDNNS----EIRYWSINNGSC 675 (837)
Q Consensus 631 ~~~~~-~~~h~~~V~sl~fspdg~~llasgs~Dg----~I~vwDl~t~~~ 675 (837)
..... +.... .....+...+ +.+++.|+.++ .+.+||+.+.+-
T Consensus 151 W~~~~~~p~~~-r~~~~~~~~~-~~iYv~GG~~~~~~~~~~~yd~~~~~W 198 (323)
T TIGR03548 151 WFELPDFPGEP-RVQPVCVKLQ-NELYVFGGGSNIAYTDGYKYSPKKNQW 198 (323)
T ss_pred eeECCCCCCCC-CCcceEEEEC-CEEEEEcCCCCccccceEEEecCCCee
Confidence 42221 11111 1111211222 45666776553 356888887653
|
Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat. |
| >PRK05560 DNA gyrase subunit A; Validated | Back alignment and domain information |
|---|
Probab=92.45 E-value=36 Score=42.47 Aligned_cols=255 Identities=11% Similarity=0.045 Sum_probs=132.8
Q ss_pred EEcCCCCEEEEEECCCcEEEEeCCCCeE---------EEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcC---CC
Q 003236 562 HFSPDGKLLATGGHDKKAVLWCTESFTV---------KSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTE---NP 629 (837)
Q Consensus 562 ~fSpdg~~Lasgs~Dg~I~VWd~~t~~~---------~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~---~~ 629 (837)
.+-++...+++-+.+|.|+--++..... ...++. .+.+..+........|+..+..|.+....+. ..
T Consensus 493 dlI~~E~v~vllS~~GyIKri~~~~~~~~~~~~~g~~~~klKe-~D~l~~~~~~~t~d~LllfTs~Grv~~l~v~~iP~~ 571 (805)
T PRK05560 493 DLIPEEDVVVTLTHGGYIKRTPLDEYRAQRRGGKGVSGAKTKE-DDFVEHLFVASTHDTLLFFTNRGRVYRLKVYEIPEA 571 (805)
T ss_pred hccCCCCEEEEEeCCCEEEEcchhhhhhhcccCCCccccccCC-CCeeEEEEEecCCCeEEEEecCCeEEEEEhhhCcCC
Confidence 4455677888888999888876543221 112222 2345555555556667777778877666543 21
Q ss_pred C-----cee---EEeeccccceEEEEEcCC-CCeEEEEEeCCCcEEEEECCCC-------eeeeEEecCCCeeEEEEecC
Q 003236 630 D-----YSL---RTFTGHSTTVMSLDFHPS-KEDLLCSCDNNSEIRYWSINNG-------SCAGVFKCQSGATQMRFQPR 693 (837)
Q Consensus 630 ~-----~~~---~~~~~h~~~V~sl~fspd-g~~llasgs~Dg~I~vwDl~t~-------~~i~~~~~~~~i~sl~~sp~ 693 (837)
. ..+ ..+.....-|.++.+... ....++..+.+|.++-.++..- .....+.....+..+.....
T Consensus 572 ~~~~~G~~i~~ll~L~~~E~Iv~~i~~~~~~~e~~lvlvTk~GyiKRi~l~~~~~~~r~G~~~ikLke~D~lv~v~~~~~ 651 (805)
T PRK05560 572 SRTARGRPIVNLLPLEPGEKITAILPVREFDDDKYLFFATKNGTVKKTSLSEFSNIRSNGIIAINLDEGDELIGVRLTDG 651 (805)
T ss_pred CcCCCCeEHHHhcCCCCCceEEEEEeccCCCCCCEEEEEeCCCEEEEEEhHHhhhcccCCceeeccCCCCEEEEEEEeCC
Confidence 1 111 112222333445555421 2335667788998887766432 22223333444555555555
Q ss_pred CCEEEEEEcCCeEEEEECCC---------CeEEEEEcCCCCCEEE-EEEcCCCCEEEEEe-CCeEEEEEcCCC---C---
Q 003236 694 LGRILAAAIENYISILDVET---------QVCRLKLQGHKNQVHS-VCWNTSGEYLASVS-DELVRVWSIGSG---S--- 756 (837)
Q Consensus 694 g~~llags~dg~I~iwDl~s---------~~~~~~l~~h~~~V~s-l~~spdg~~Lasgs-Dg~I~IwDl~s~---~--- 756 (837)
...++..+..|.+..+.+.. |.....+.. ...|.+ +.+.+++.+++..+ .|.++...+..- .
T Consensus 652 ~d~lll~T~~Gr~~r~~~~eIp~~gr~~~Gv~~i~L~~-~E~Vv~~~~v~~~~~~il~vTk~G~iKr~~l~e~~~~~R~~ 730 (805)
T PRK05560 652 DDDILLATKNGKAIRFPESDVRPMGRTARGVRGIKLRE-GDEVVSMDVVREDSQEILTVTENGYGKRTPVSEYRLQGRGG 730 (805)
T ss_pred CCEEEEEECCCcEEEEEhhhcCccCcccCCcccccCCC-CCEEEEEEEEcCCCcEEEEEEeCCeEEEEEHHHhhccCCCC
Confidence 67788888888777766532 222223322 233444 34444433555555 888887765321 1
Q ss_pred CceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEEEeccCCCCeeEEEEeCC
Q 003236 757 KGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSAHDKLVSSLAASTV 820 (837)
Q Consensus 757 ~~~~i~~~~~~~~~I~sv~fspdg~~L~sgs~dg~I~IwDl~s~~~~~l~~h~~~V~sla~spd 820 (837)
.......+......+..+........+++.+.+|.+..++...-.. .......|..+.+..+
T Consensus 731 kG~~~lkl~~~~d~lv~v~~v~~~~~v~i~T~~G~~lrf~~~eI~~--~gR~a~GVk~I~L~~~ 792 (805)
T PRK05560 731 KGVITIKITEKNGKLVGALPVDDDDEIMLITDSGKLIRTRVSEISI--TGRNTQGVRLIRLDEG 792 (805)
T ss_pred CcEEeeeccCCCCeEEEEEEecCCCeEEEEecCCeEEEEEHHHCCc--cccCCCCeeeEecCCC
Confidence 1122223333234444444334445577778888777777654222 1223345666666443
|
|
| >COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=92.26 E-value=5.7 Score=40.35 Aligned_cols=171 Identities=9% Similarity=0.060 Sum_probs=90.5
Q ss_pred CCCEEEEEEC--CCcEEEEeCCCCeEEEEeccCCCCeEEEEEcCCCCEEE-EEeCCCeEEEEEcCCCCceeEEeeccccc
Q 003236 566 DGKLLATGGH--DKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLA-TSSADRTVRVWDTENPDYSLRTFTGHSTT 642 (837)
Q Consensus 566 dg~~Lasgs~--Dg~I~VWd~~t~~~~~~l~~h~~~I~~l~fspdg~~La-tgs~Dg~I~IWDl~~~~~~~~~~~~h~~~ 642 (837)
+|.++.+.+. ...|++||+.+++.+....-....+..=-...-+.++. ..-.||...++|.++-+. +..+. ..+.
T Consensus 55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~~-lg~~~-y~Ge 132 (262)
T COG3823 55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTWKEGVAFKYDADTLEE-LGRFS-YEGE 132 (262)
T ss_pred CCEEEEeccccccceeEEEeccCceEEEEeecCCccccccceeeccceEEEEEeccceeEEEChHHhhh-hcccc-cCCc
Confidence 4556666553 34799999999888765432211111111111122332 233578888999887443 22222 2334
Q ss_pred eEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeeEEec---CC---CeeEEEEecCCCEEEEEEcCCeEEEEECCCCeE
Q 003236 643 VMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC---QS---GATQMRFQPRLGRILAAAIENYISILDVETQVC 716 (837)
Q Consensus 643 V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~---~~---~i~sl~~sp~g~~llags~dg~I~iwDl~s~~~ 716 (837)
=+.++. |+..++ .++...+++.-|.++.....++.. .. .++.+.|. +|..++-.-.+..|...|..+++.
T Consensus 133 GWgLt~--d~~~Li-msdGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~V-dG~lyANVw~t~~I~rI~p~sGrV 208 (262)
T COG3823 133 GWGLTS--DDKNLI-MSDGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEWV-DGELYANVWQTTRIARIDPDSGRV 208 (262)
T ss_pred ceeeec--CCcceE-eeCCceEEEecCHHHhhhcceEEEEECCeecccccceeee-ccEEEEeeeeecceEEEcCCCCcE
Confidence 455554 345455 343345677777766544443332 11 22333443 233333344456677777777776
Q ss_pred EEEEc------------CCCCCEEEEEEcCCCC-EEEEE
Q 003236 717 RLKLQ------------GHKNQVHSVCWNTSGE-YLASV 742 (837)
Q Consensus 717 ~~~l~------------~h~~~V~sl~~spdg~-~Lasg 742 (837)
+..+. .|.+-.+.|++.|++. ++++|
T Consensus 209 ~~widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTG 247 (262)
T COG3823 209 VAWIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITG 247 (262)
T ss_pred EEEEEccCCchhcCccccccccccceeecCcCCeEEEec
Confidence 65443 2445677899999874 44444
|
|
| >PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes [] | Back alignment and domain information |
|---|
Probab=92.11 E-value=4.5 Score=48.76 Aligned_cols=101 Identities=9% Similarity=0.145 Sum_probs=66.6
Q ss_pred CCeEEEEEeCCCcEEEEECCC-------C-------------eeeeEEecCCCeeEEEEe--cCCCEEEEEEcCCeEEEE
Q 003236 652 KEDLLCSCDNNSEIRYWSINN-------G-------------SCAGVFKCQSGATQMRFQ--PRLGRILAAAIENYISIL 709 (837)
Q Consensus 652 g~~llasgs~Dg~I~vwDl~t-------~-------------~~i~~~~~~~~i~sl~~s--p~g~~llags~dg~I~iw 709 (837)
+..+|+.|.+||.|.+|.+++ . ++...+..+..+..++++ ...+.|++++....|.||
T Consensus 113 ~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~~~rlIAVSsNs~~VTVF 192 (717)
T PF08728_consen 113 GEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYKKSRLIAVSSNSQEVTVF 192 (717)
T ss_pred CeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEecCcceEEEEecCCceEEEE
Confidence 456888999999999996521 1 122334446678888988 666777777777777777
Q ss_pred ECCCC--e-EEEEEcCCCCCEEEEEEcCCC-----C-EEEEEe-CCeEEEEEc
Q 003236 710 DVETQ--V-CRLKLQGHKNQVHSVCWNTSG-----E-YLASVS-DELVRVWSI 752 (837)
Q Consensus 710 Dl~s~--~-~~~~l~~h~~~V~sl~~spdg-----~-~Lasgs-Dg~I~IwDl 752 (837)
-.... + ....-..|...|-+|+|.++. . .|++++ .|.+.+|++
T Consensus 193 af~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 193 AFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred EEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 54431 1 111111266789999997643 2 666777 998888887
|
RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance []. |
| >PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain | Back alignment and domain information |
|---|
Probab=91.98 E-value=0.46 Score=36.48 Aligned_cols=31 Identities=16% Similarity=0.354 Sum_probs=28.5
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCeEEEEEcC
Q 003236 597 TQWITDVRFSPSLSRLATSSADRTVRVWDTE 627 (837)
Q Consensus 597 ~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~ 627 (837)
...|.+++|+|...+||.++.||.|.||.++
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~ 41 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRLN 41 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEECC
Confidence 4569999999999999999999999999994
|
|
| >COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=91.94 E-value=2.7 Score=47.73 Aligned_cols=135 Identities=13% Similarity=0.073 Sum_probs=88.4
Q ss_pred CCCEEEE-EEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEcCCC--------CEEEEEeCCeEEEEEcCCCCCceeEEE
Q 003236 693 RLGRILA-AAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSG--------EYLASVSDELVRVWSIGSGSKGECIHE 763 (837)
Q Consensus 693 ~g~~lla-gs~dg~I~iwDl~s~~~~~~l~~h~~~V~sl~~spdg--------~~LasgsDg~I~IwDl~s~~~~~~i~~ 763 (837)
+...|+. ++....++-.|++.|+.+..+..|... -+.|.|+. ..|+..++..|.-.|.+-......+..
T Consensus 478 dssli~~dg~~~~kLykmDIErGkvveeW~~~ddv--vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi~v~e 555 (776)
T COG5167 478 DSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDDV--VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKIKVVE 555 (776)
T ss_pred CcceEEecCCCcccceeeecccceeeeEeecCCcc--eeecCCchhHHhcCccceEEeecccceEEecccccCCceeeee
Confidence 3344443 344568888899999999999877665 46777743 356666777776667664432111111
Q ss_pred ee--cCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE-EeccCCCCeeEEEEeCCCCEEEEEECC
Q 003236 764 LS--CTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHD 830 (837)
Q Consensus 764 ~~--~~~~~I~sv~fspdg~~L~sgs~dg~I~IwDl~s~~~~-~l~~h~~~V~sla~spdg~~LaSgs~D 830 (837)
.+ ...+.+.+..- ....+|++++..|.|++||.-..+.. .+.+....|..|..+.+|++|++.|..
T Consensus 556 sKdY~tKn~Fss~~t-TesGyIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~ilaTCk~ 624 (776)
T COG5167 556 SKDYKTKNKFSSGMT-TESGYIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKHILATCKN 624 (776)
T ss_pred ehhcccccccccccc-ccCceEEEecCCCceeeehhhcchhhhcCcccccceeeeEeecCCcEEEEeecc
Confidence 11 11233333333 34458999999999999996554433 566778899999999999987776653
|
|
| >COG1506 DAP2 Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=91.90 E-value=29 Score=41.98 Aligned_cols=146 Identities=12% Similarity=0.149 Sum_probs=78.9
Q ss_pred eccCCCCeEEEEEcCCCCEEEEEeCCCe--EEEEEcCCCCceeEEeeccccceEEEEEcCCCCeEEEEE-----eCCCc-
Q 003236 593 LEEHTQWITDVRFSPSLSRLATSSADRT--VRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSC-----DNNSE- 664 (837)
Q Consensus 593 l~~h~~~I~~l~fspdg~~Latgs~Dg~--I~IWDl~~~~~~~~~~~~h~~~V~sl~fspdg~~llasg-----s~Dg~- 664 (837)
...+...+..+.|+|++..++..+.++. ..+|-+.... .+..+...|....|++++..+++.. ..++.
T Consensus 55 ~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~l~l~~~~g----~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~~~~~~ 130 (620)
T COG1506 55 LLTFGGGVSELRWSPDGSVLAFVSTDGGRVAQLYLVDVGG----LITKTAFGVSDARWSPDGDRIAFLTAEGASKRDGGD 130 (620)
T ss_pred ccccCCcccccccCCCCCEEEEEeccCCCcceEEEEecCC----ceeeeecccccceeCCCCCeEEEEecccccccCCce
Confidence 3456778899999999999998874332 3444443221 3344556677888888887666511 11222
Q ss_pred ------EEEEECCCC-eeee------------EEecCCCeeEEEEecCCCEEEEEEcCC-------eEEEEECCCCeEEE
Q 003236 665 ------IRYWSINNG-SCAG------------VFKCQSGATQMRFQPRLGRILAAAIEN-------YISILDVETQVCRL 718 (837)
Q Consensus 665 ------I~vwDl~t~-~~i~------------~~~~~~~i~sl~~sp~g~~llags~dg-------~I~iwDl~s~~~~~ 718 (837)
+.+|....+ +... .......+....+.+++..++....+. ...++...+ ..+.
T Consensus 131 ~~~~~~~~~~~~~~g~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 209 (620)
T COG1506 131 HLFVDRLPVWFDGRGGERSDLYVVDIESKLIKLGLGNLDVVSFATDGDGRLVASIRLDDDADPWVTNLYVLIEGN-GELE 209 (620)
T ss_pred eeeecccceeecCCCCcccceEEEccCcccccccCCCCceeeeeeCCCCceeEEeeeccccCCceEeeEEEecCC-CceE
Confidence 333333222 1111 111123345555555556555544432 123333323 3344
Q ss_pred EEcCCCCCEEEEEEcCCCCEEEEEe
Q 003236 719 KLQGHKNQVHSVCWNTSGEYLASVS 743 (837)
Q Consensus 719 ~l~~h~~~V~sl~~spdg~~Lasgs 743 (837)
.+......+..+.|.++++.++..+
T Consensus 210 ~~~~~~~~~~~~~~~~~gk~~~~~~ 234 (620)
T COG1506 210 SLTPGEGSISKLAFDADGKSIALLG 234 (620)
T ss_pred EEcCCCceeeeeeeCCCCCeeEEec
Confidence 4444556688899999998555543
|
|
| >TIGR03547 muta_rot_YjhT mutatrotase, YjhT family | Back alignment and domain information |
|---|
Probab=91.71 E-value=25 Score=38.97 Aligned_cols=24 Identities=8% Similarity=0.084 Sum_probs=15.7
Q ss_pred CCCEEEEEeCC-----------CeEEEEEcCCCCc
Q 003236 608 SLSRLATSSAD-----------RTVRVWDTENPDY 631 (837)
Q Consensus 608 dg~~Latgs~D-----------g~I~IWDl~~~~~ 631 (837)
++++.+.|+.+ ..+..||..+...
T Consensus 63 ~~~iYv~GG~~~~~~~~~~~~~~~v~~Yd~~~~~W 97 (346)
T TIGR03547 63 DGKLYVFGGIGKANSEGSPQVFDDVYRYDPKKNSW 97 (346)
T ss_pred CCEEEEEeCCCCCCCCCcceecccEEEEECCCCEE
Confidence 56677777653 2477788876554
|
Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein. |
| >KOG2247 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.67 E-value=0.056 Score=60.48 Aligned_cols=148 Identities=12% Similarity=0.128 Sum_probs=104.7
Q ss_pred CeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeEEeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeeE
Q 003236 599 WITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGV 678 (837)
Q Consensus 599 ~I~~l~fspdg~~Latgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~ 678 (837)
......|.+.+.-++.++.+-.|..||-.... ......++....++|+.+++.+++.+...+.+.+||+.+...-..
T Consensus 36 ~pi~~~w~~e~~nlavaca~tiv~~YD~agq~---~le~n~tg~aldm~wDkegdvlavlAek~~piylwd~n~eytqqL 112 (615)
T KOG2247|consen 36 GPIIHRWRPEGHNLAVACANTIVIYYDKAGQV---ILELNPTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQQL 112 (615)
T ss_pred ccceeeEecCCCceehhhhhhHHHhhhhhcce---ecccCCchhHhhhhhccccchhhhhhhcCCCeeechhhhhhHHHH
Confidence 34456678877778888889889999876432 122223456778899998888888888899999999986432211
Q ss_pred -EecCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCeEEE
Q 003236 679 -FKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVSDELVRV 749 (837)
Q Consensus 679 -~~~~~~i~sl~~sp~g~~llags~dg~I~iwDl~s~~~~~~l~~h~~~V~sl~~spdg~~LasgsDg~I~I 749 (837)
+.....-.-+.|++....++.+...+.+.||+..+.+.+.....|...+++++|.+.+..+..+.|..+.+
T Consensus 113 E~gg~~s~sll~wsKg~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~lEd~vil~dcd~~L~v 184 (615)
T KOG2247|consen 113 ESGGTSSKSLLAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVTLEDYVILCDCDNTLSV 184 (615)
T ss_pred hccCcchHHHHhhccCCccccccccccceEEEeccchhhhhhhcccccceeEEEecccceeeecCcHHHHHH
Confidence 11111222267888888888998899999999888766655555889999999998877665544554433
|
|
| >PRK05560 DNA gyrase subunit A; Validated | Back alignment and domain information |
|---|
Probab=91.63 E-value=44 Score=41.75 Aligned_cols=226 Identities=9% Similarity=0.037 Sum_probs=108.2
Q ss_pred cCCCCEEEEEeCCCeEEEEEcCCCCc--------eeEEeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEEC---CC--
Q 003236 606 SPSLSRLATSSADRTVRVWDTENPDY--------SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSI---NN-- 672 (837)
Q Consensus 606 spdg~~Latgs~Dg~I~IWDl~~~~~--------~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl---~t-- 672 (837)
-++...+++.+.+|.|+--++.+-.. ....+.. ...+..+........+++..+ .|.+....+ ..
T Consensus 495 I~~E~v~vllS~~GyIKri~~~~~~~~~~~~~g~~~~klKe-~D~l~~~~~~~t~d~LllfTs-~Grv~~l~v~~iP~~~ 572 (805)
T PRK05560 495 IPEEDVVVTLTHGGYIKRTPLDEYRAQRRGGKGVSGAKTKE-DDFVEHLFVASTHDTLLFFTN-RGRVYRLKVYEIPEAS 572 (805)
T ss_pred cCCCCEEEEEeCCCEEEEcchhhhhhhcccCCCccccccCC-CCeeEEEEEecCCCeEEEEec-CCeEEEEEhhhCcCCC
Confidence 34566777888888888776543110 0111111 233333333344454554443 566655533 22
Q ss_pred ----Ceeee---EEecCCCee-EEEEe--cCCCEEEEEEcCCeEEEEECCC-------CeEEEEEcCCCCCEEEEEE-cC
Q 003236 673 ----GSCAG---VFKCQSGAT-QMRFQ--PRLGRILAAAIENYISILDVET-------QVCRLKLQGHKNQVHSVCW-NT 734 (837)
Q Consensus 673 ----~~~i~---~~~~~~~i~-sl~~s--p~g~~llags~dg~I~iwDl~s-------~~~~~~l~~h~~~V~sl~~-sp 734 (837)
|..+. .+.....|. ++.+. ++...++..+.+|.|+-.++.. +.....+... +.+..+.. +.
T Consensus 573 ~~~~G~~i~~ll~L~~~E~Iv~~i~~~~~~~e~~lvlvTk~GyiKRi~l~~~~~~~r~G~~~ikLke~-D~lv~v~~~~~ 651 (805)
T PRK05560 573 RTARGRPIVNLLPLEPGEKITAILPVREFDDDKYLFFATKNGTVKKTSLSEFSNIRSNGIIAINLDEG-DELIGVRLTDG 651 (805)
T ss_pred cCCCCeEHHHhcCCCCCceEEEEEeccCCCCCCEEEEEeCCCEEEEEEhHHhhhcccCCceeeccCCC-CEEEEEEEeCC
Confidence 22221 112223333 34443 2567899999999988776543 2233344433 33433333 33
Q ss_pred CCCEEEEEeCCeEEEEEcCCC---C---CceeEEEeecCCCceEEE-EEeCCCCEEEEEEcCCeEEEEECCCC-------
Q 003236 735 SGEYLASVSDELVRVWSIGSG---S---KGECIHELSCTGNKFHSC-VFHPTFPSLLVIGCYETLELWNMTEN------- 800 (837)
Q Consensus 735 dg~~LasgsDg~I~IwDl~s~---~---~~~~i~~~~~~~~~I~sv-~fspdg~~L~sgs~dg~I~IwDl~s~------- 800 (837)
+..+++.++.|.+..+.+..- . .+.....+.. +..|..+ .+.++..+++..+..|.++...+..-
T Consensus 652 ~d~lll~T~~Gr~~r~~~~eIp~~gr~~~Gv~~i~L~~-~E~Vv~~~~v~~~~~~il~vTk~G~iKr~~l~e~~~~~R~~ 730 (805)
T PRK05560 652 DDDILLATKNGKAIRFPESDVRPMGRTARGVRGIKLRE-GDEVVSMDVVREDSQEILTVTENGYGKRTPVSEYRLQGRGG 730 (805)
T ss_pred CCEEEEEECCCcEEEEEhhhcCccCcccCCcccccCCC-CCEEEEEEEEcCCCcEEEEEEeCCeEEEEEHHHhhccCCCC
Confidence 344555555776555554321 0 1122222322 3334444 44444447888898898877764321
Q ss_pred c-EE--EeccCCCCeeEEEEeCCCCEEEEEECCCcEEE
Q 003236 801 K-TL--TLSAHDKLVSSLAASTVNGMVASASHDKCVKI 835 (837)
Q Consensus 801 ~-~~--~l~~h~~~V~sla~spdg~~LaSgs~DG~I~I 835 (837)
+ .. .+....+.+..+........++..+.+|.+..
T Consensus 731 kG~~~lkl~~~~d~lv~v~~v~~~~~v~i~T~~G~~lr 768 (805)
T PRK05560 731 KGVITIKITEKNGKLVGALPVDDDDEIMLITDSGKLIR 768 (805)
T ss_pred CcEEeeeccCCCCeEEEEEEecCCCeEEEEecCCeEEE
Confidence 1 11 22232334444333333344555666776544
|
|
| >KOG2377 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=91.58 E-value=12 Score=42.08 Aligned_cols=151 Identities=15% Similarity=0.123 Sum_probs=86.3
Q ss_pred EEEEcCCCCEEEEEECCCcEEEEeCCCC---eEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCce---e
Q 003236 560 SCHFSPDGKLLATGGHDKKAVLWCTESF---TVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYS---L 633 (837)
Q Consensus 560 sl~fSpdg~~Lasgs~Dg~I~VWd~~t~---~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~~~~~---~ 633 (837)
.+-|...++.|++ ...|.+.=|-++.. -++.......++|.+|.|++|.+.||+--.|++|.+++....+.. .
T Consensus 27 gvFfDDaNkqlfa-vrSggatgvvvkgpndDVpiSfdm~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~ 105 (657)
T KOG2377|consen 27 GVFFDDANKQLFA-VRSGGATGVVVKGPNDDVPISFDMDDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYT 105 (657)
T ss_pred ceeeccCcceEEE-EecCCeeEEEEeCCCCCCCceeeecCCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHH
Confidence 3445543444333 33455556654322 122222345679999999999999999999999999998432221 1
Q ss_pred EEeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCC--eeeeEEecCCCeeEEEEecCCCEEEEEEc--CCeEEEE
Q 003236 634 RTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNG--SCAGVFKCQSGATQMRFQPRLGRILAAAI--ENYISIL 709 (837)
Q Consensus 634 ~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~--~~i~~~~~~~~i~sl~~sp~g~~llags~--dg~I~iw 709 (837)
.+....+..|..++|....+ +.+.. +..+-+|-+... ....+-.+.-.|.-..|.++.+.++.++. .+.+.-+
T Consensus 106 ~~ck~k~~~IlGF~W~~s~e-~A~i~--~~G~e~y~v~pekrslRlVks~~~nvnWy~yc~et~v~LL~t~~~~n~lnpf 182 (657)
T KOG2377|consen 106 QECKTKNANILGFCWTSSTE-IAFIT--DQGIEFYQVLPEKRSLRLVKSHNLNVNWYMYCPETAVILLSTTVLENVLNPF 182 (657)
T ss_pred HHhccCcceeEEEEEecCee-EEEEe--cCCeEEEEEchhhhhhhhhhhcccCccEEEEccccceEeeeccccccccccE
Confidence 22333445688999987633 33333 233555554322 22222223456777888888776555443 3455545
Q ss_pred ECCCC
Q 003236 710 DVETQ 714 (837)
Q Consensus 710 Dl~s~ 714 (837)
-++++
T Consensus 183 ~~~~~ 187 (657)
T KOG2377|consen 183 HFRAG 187 (657)
T ss_pred EEeec
Confidence 55544
|
|
| >KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=91.51 E-value=4.8 Score=51.08 Aligned_cols=228 Identities=12% Similarity=0.098 Sum_probs=109.1
Q ss_pred CeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEeccCC-CCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeEE
Q 003236 557 KVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHT-QWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRT 635 (837)
Q Consensus 557 ~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~-~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~~~~~~~~ 635 (837)
....++|+|.-.++|.|+.+|.|.+|-...-+.......-. ..+..+.|......+.....+..+.+|.......
T Consensus 37 ~~~~~afD~~q~llai~t~tg~i~~yg~~~ve~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~---- 112 (993)
T KOG1983|consen 37 TPSALAFDPTQGLLAIGTRTGAIKIYGQPGVEFVGLHPKQNQINVTRIELLVGISRNLVLSDDDSLHLWSIKIKTG---- 112 (993)
T ss_pred CCcceeeccccceEEEEEecccEEEecccceEEEeccccccchhhhheeeeecccccceeecccceeeecccccce----
Confidence 45678999999999999999999999765433332221111 1222222222222334444555666666553221
Q ss_pred eeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeeEEec--CCCeeEE-EEecCCCEEEEEEcCCeEEEEECC
Q 003236 636 FTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC--QSGATQM-RFQPRLGRILAAAIENYISILDVE 712 (837)
Q Consensus 636 ~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~--~~~i~sl-~~sp~g~~llags~dg~I~iwDl~ 712 (837)
..+...+++....+--. ++.+ ..+.+++||..-......... ....... .+.+..-.+..--.+-.-.++-+.
T Consensus 113 -~~~~~~~~~~~~~~~~~--~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~ 188 (993)
T KOG1983|consen 113 -VFLKQEITSFVTDPPPD--WLIG-ENGLVKVSDVLRHQLSDLKYAGTESSNFVPYESLSPTLSIEGLVIDLDTVLISLP 188 (993)
T ss_pred -eecCCcceeccCCCCcc--hhcc-cCceeeEeeechhhhccceeccccccccceeeeeccceeeeccccccccceeecc
Confidence 11223333333322211 2344 677888887753221111100 0000000 000000000000000000111111
Q ss_pred CCeEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeE
Q 003236 713 TQVCRLKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETL 792 (837)
Q Consensus 713 s~~~~~~l~~h~~~V~sl~~spdg~~LasgsDg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fspdg~~L~sgs~dg~I 792 (837)
... ..+..+..++.+..+......+.....+.+-+|+..... ....+.... ..+..++..++++-.|+.+
T Consensus 189 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~-----~~~~~~~~~~v~~h~Dgs~ 258 (993)
T KOG1983|consen 189 DAY--LGLSLIEYESLQVLYYSPTKILIGFNRGLVVIKDRASKY---VQSAYLPNG-----QLESRDGSHFVSYHTDGSY 258 (993)
T ss_pred ccc--ccccccccccceeeeecCCCcceeeeeeeeeehhccccc---chhhccccc-----ccCccCCceEEEEEecCCE
Confidence 001 222235566666666666666666666777777655431 111111111 1227888999999999999
Q ss_pred EEEECCCCcE
Q 003236 793 ELWNMTENKT 802 (837)
Q Consensus 793 ~IwDl~s~~~ 802 (837)
.+||...++.
T Consensus 259 ~fWd~s~g~~ 268 (993)
T KOG1983|consen 259 AFWDVSSGKL 268 (993)
T ss_pred EeeecCCCce
Confidence 9999988754
|
|
| >TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118 | Back alignment and domain information |
|---|
Probab=91.47 E-value=23 Score=38.24 Aligned_cols=194 Identities=9% Similarity=0.077 Sum_probs=108.6
Q ss_pred ceEEEEEcCCCCeEEEEEeCCCcEEEEECC------CC-eeeeEEec------CCCeeEEEEecCCC------------E
Q 003236 642 TVMSLDFHPSKEDLLCSCDNNSEIRYWSIN------NG-SCAGVFKC------QSGATQMRFQPRLG------------R 696 (837)
Q Consensus 642 ~V~sl~fspdg~~llasgs~Dg~I~vwDl~------t~-~~i~~~~~------~~~i~sl~~sp~g~------------~ 696 (837)
.-+.|+++|.+. +.++....+...+||.. .. ..+..+.. ....+.+.|+.... .
T Consensus 24 N~WGia~~p~~~-~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~ 102 (336)
T TIGR03118 24 NAWGLSYRPGGP-FWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSR 102 (336)
T ss_pred ccceeEecCCCC-EEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCccccee
Confidence 457899999875 55566667889999987 12 22233321 23466677764322 3
Q ss_pred EEEEEcCCeEEEEECCCCeE-----EEEEcC-CCCCE-EEEEEcC--CCCEEEEEe--CCeEEEEEcCCCCCceeEEEe-
Q 003236 697 ILAAAIENYISILDVETQVC-----RLKLQG-HKNQV-HSVCWNT--SGEYLASVS--DELVRVWSIGSGSKGECIHEL- 764 (837)
Q Consensus 697 llags~dg~I~iwDl~s~~~-----~~~l~~-h~~~V-~sl~~sp--dg~~Lasgs--Dg~I~IwDl~s~~~~~~i~~~- 764 (837)
++.+++||+|.-|...-... ...+.. ....| ..+++.. .+.+|+.+. .++|.|||-.-.... .-..+
T Consensus 103 Fif~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~-~~g~F~ 181 (336)
T TIGR03118 103 FLFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPP-LPGSFI 181 (336)
T ss_pred EEEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCcccccc-CCCCcc
Confidence 68888999999998543211 122221 12333 3555543 467888777 889999985432100 00000
Q ss_pred ----ecCCC-----------ceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEEEe--ccCCCCeeEEEEeC------CC
Q 003236 765 ----SCTGN-----------KFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTL--SAHDKLVSSLAAST------VN 821 (837)
Q Consensus 765 ----~~~~~-----------~I~sv~fspdg~~L~sgs~dg~I~IwDl~s~~~~~l--~~h~~~V~sla~sp------dg 821 (837)
...-. .|+-..-.++...=+.+..-|.|-+||....-+.++ .+.-...+.|+..| .+
T Consensus 182 DP~iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~G~l~~r~as~g~LNaPWG~a~APa~FG~~sg 261 (336)
T TIGR03118 182 DPALPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLNGQLLRRVASSGRLNAPWGLAIAPESFGSLSG 261 (336)
T ss_pred CCCCCCCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcCCCcEEEEeccCCcccCCceeeeChhhhCCCCC
Confidence 00000 011111122333333444556899999866554444 23445667787765 35
Q ss_pred CEEEEEECCCcEEEeC
Q 003236 822 GMVASASHDKCVKIWK 837 (837)
Q Consensus 822 ~~LaSgs~DG~I~IWd 837 (837)
.+|+----||+|..||
T Consensus 262 ~lLVGNFGDG~InaFD 277 (336)
T TIGR03118 262 ALLVGNFGDGTINAYD 277 (336)
T ss_pred CeEEeecCCceeEEec
Confidence 5666656799999887
|
This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus. |
| >PRK14131 N-acetylneuraminic acid mutarotase; Provisional | Back alignment and domain information |
|---|
Probab=91.22 E-value=17 Score=41.06 Aligned_cols=39 Identities=15% Similarity=0.183 Sum_probs=20.4
Q ss_pred EEEEECCCCcEEEeccCC-CCeeEEEEeCCCCEEEEEECC
Q 003236 792 LELWNMTENKTLTLSAHD-KLVSSLAASTVNGMVASASHD 830 (837)
Q Consensus 792 I~IwDl~s~~~~~l~~h~-~~V~sla~spdg~~LaSgs~D 830 (837)
+.+||..+.+...+..-. ..-...+..-+++++++|+..
T Consensus 314 ~e~yd~~~~~W~~~~~lp~~r~~~~av~~~~~iyv~GG~~ 353 (376)
T PRK14131 314 DEIYALVNGKWQKVGELPQGLAYGVSVSWNNGVLLIGGET 353 (376)
T ss_pred hheEEecCCcccccCcCCCCccceEEEEeCCEEEEEcCCC
Confidence 567888877654222111 111122344557788888753
|
|
| >PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal | Back alignment and domain information |
|---|
Probab=91.14 E-value=5.5 Score=37.71 Aligned_cols=111 Identities=9% Similarity=0.082 Sum_probs=70.2
Q ss_pred EEEecCCCEEEEEEcCCeEEEEECCCCe--------EEEEEcCCCCCEEEEEEcC-----CCCEEEEEeCCeEEEEEcCC
Q 003236 688 MRFQPRLGRILAAAIENYISILDVETQV--------CRLKLQGHKNQVHSVCWNT-----SGEYLASVSDELVRVWSIGS 754 (837)
Q Consensus 688 l~~sp~g~~llags~dg~I~iwDl~s~~--------~~~~l~~h~~~V~sl~~sp-----dg~~LasgsDg~I~IwDl~s 754 (837)
-.|......|++++..+.|.|++..... .+..+. -...|++|+--+ +...|+.|+...|.+||+..
T Consensus 4 GkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LN-in~~italaaG~l~~~~~~D~LliGt~t~llaYDV~~ 82 (136)
T PF14781_consen 4 GKFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLN-INQEITALAAGRLKPDDGRDCLLIGTQTSLLAYDVEN 82 (136)
T ss_pred EEeCCCceeEEEEecCCEEEEECCCccccccccccCceeEEE-CCCceEEEEEEecCCCCCcCEEEEeccceEEEEEccc
Confidence 3455555568888888999999876432 233333 456777775543 45689999999999999987
Q ss_pred CCCceeEEEeecCCCceEEEEEe---CCCCEEEEEEcCCeEEEEECCCCcEE
Q 003236 755 GSKGECIHELSCTGNKFHSCVFH---PTFPSLLVIGCYETLELWNMTENKTL 803 (837)
Q Consensus 755 ~~~~~~i~~~~~~~~~I~sv~fs---pdg~~L~sgs~dg~I~IwDl~s~~~~ 803 (837)
... ...+ .-...+.++.+- ....-++..+.+-.|.-||....+.+
T Consensus 83 N~d-~Fyk---e~~DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~G~e~f 130 (136)
T PF14781_consen 83 NSD-LFYK---EVPDGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDYEGNEIF 130 (136)
T ss_pred Cch-hhhh---hCccceeEEEEEecCCCCCcEEEECceEEEEEeCCCCcEEE
Confidence 632 1111 223455555552 22334666666778888887766654
|
|
| >PF13449 Phytase-like: Esterase-like activity of phytase | Back alignment and domain information |
|---|
Probab=90.93 E-value=29 Score=38.32 Aligned_cols=143 Identities=14% Similarity=0.182 Sum_probs=85.5
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCe------EEEEEcCCCC---cee-----EEeeccc--------cceEEEEEcCCCCeE
Q 003236 598 QWITDVRFSPSLSRLATSSADRT------VRVWDTENPD---YSL-----RTFTGHS--------TTVMSLDFHPSKEDL 655 (837)
Q Consensus 598 ~~I~~l~fspdg~~Latgs~Dg~------I~IWDl~~~~---~~~-----~~~~~h~--------~~V~sl~fspdg~~l 655 (837)
+.+..|.+.+++..+++.+.+|. +..+++.... ..+ ..+.... ....+|++.+++. +
T Consensus 20 GGlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g~-~ 98 (326)
T PF13449_consen 20 GGLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDGS-F 98 (326)
T ss_pred CcEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCCC-E
Confidence 56778888866666677777777 6655554310 001 1111111 1445788855554 5
Q ss_pred EEEEeCC------CcEEEEECCCCeeeeEEe----------------cCCCeeEEEEecCCCEEEEEEcC-----C----
Q 003236 656 LCSCDNN------SEIRYWSINNGSCAGVFK----------------CQSGATQMRFQPRLGRILAAAIE-----N---- 704 (837)
Q Consensus 656 lasgs~D------g~I~vwDl~t~~~i~~~~----------------~~~~i~sl~~sp~g~~llags~d-----g---- 704 (837)
+++.-.+ ..|+.++.. |+.+..+. .+.+...++++|++..|+++... +
T Consensus 99 ~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E~~l~~d~~~~~ 177 (326)
T PF13449_consen 99 WISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAMESPLKQDGPRAN 177 (326)
T ss_pred EEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEECccccCCCcccc
Confidence 6566556 678888876 65544432 23457899999999977776542 2
Q ss_pred -------eEEEEECCC-Ce----EEEEEcC-----CCCCEEEEEEcCCCCEEEEE
Q 003236 705 -------YISILDVET-QV----CRLKLQG-----HKNQVHSVCWNTSGEYLASV 742 (837)
Q Consensus 705 -------~I~iwDl~s-~~----~~~~l~~-----h~~~V~sl~~spdg~~Lasg 742 (837)
.|..||..+ +. ..+.+.. ....|..+.+.+++++|+.-
T Consensus 178 ~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvLE 232 (326)
T PF13449_consen 178 PDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVLE 232 (326)
T ss_pred cccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEEE
Confidence 244556554 21 2223322 35678899999999987754
|
|
| >PF14761 HPS3_N: Hermansky-Pudlak syndrome 3 | Back alignment and domain information |
|---|
Probab=90.89 E-value=17 Score=37.34 Aligned_cols=102 Identities=7% Similarity=0.146 Sum_probs=67.4
Q ss_pred CeEEEEEeCCCcEEEEECC--CCeeeeEEecCCCeeEEEEecCCCEEEEEEcCC------eEEEE-ECCC----CeEEE-
Q 003236 653 EDLLCSCDNNSEIRYWSIN--NGSCAGVFKCQSGATQMRFQPRLGRILAAAIEN------YISIL-DVET----QVCRL- 718 (837)
Q Consensus 653 ~~llasgs~Dg~I~vwDl~--t~~~i~~~~~~~~i~sl~~sp~g~~llags~dg------~I~iw-Dl~s----~~~~~- 718 (837)
+.+|++ ...+.|.+|++. .......|..-+.|..+.++..|+++++--.+. .+++| +.+. ..++.
T Consensus 29 d~Lfva-~~g~~Vev~~l~~~~~~~~~~F~Tv~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~v~v 107 (215)
T PF14761_consen 29 DALFVA-ASGCKVEVYDLEQEECPLLCTFSTVGRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEENSPVRV 107 (215)
T ss_pred ceEEEE-cCCCEEEEEEcccCCCceeEEEcchhheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhcccCCcEEE
Confidence 345444 447789999998 445667777778999999999999999987642 45665 2221 11111
Q ss_pred EEcCC---------------------CCCEEEEEEcCCCCEEEEEeCCeEEEEEcCCC
Q 003236 719 KLQGH---------------------KNQVHSVCWNTSGEYLASVSDELVRVWSIGSG 755 (837)
Q Consensus 719 ~l~~h---------------------~~~V~sl~~spdg~~LasgsDg~I~IwDl~s~ 755 (837)
.+-|| ...+.+++..|-.--|++|+++.+.+|.+...
T Consensus 108 RiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~~~~l~lf~l~~~ 165 (215)
T PF14761_consen 108 RIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGCGNKLVLFTLKYQ 165 (215)
T ss_pred EEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEcCCEEEEEEEEEE
Confidence 22222 23567787777555566678888999987643
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=90.82 E-value=6.7 Score=46.77 Aligned_cols=170 Identities=11% Similarity=0.152 Sum_probs=82.0
Q ss_pred CcEEEEECCCCeeeeEEe-cCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEE---EcCCCCCEEEEEEcCCCCE
Q 003236 663 SEIRYWSINNGSCAGVFK-CQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLK---LQGHKNQVHSVCWNTSGEY 738 (837)
Q Consensus 663 g~I~vwDl~t~~~i~~~~-~~~~i~sl~~sp~g~~llags~dg~I~iwDl~s~~~~~~---l~~h~~~V~sl~~spdg~~ 738 (837)
-.|+||++. |..+..+. .+..+..+.|+.+ ..|++...+|.+.+|++-....... +......|..+.|..+|-.
T Consensus 64 ~~I~If~~s-G~lL~~~~w~~~~lI~mgWs~~-eeLI~v~k~g~v~Vy~~~ge~ie~~svg~e~~~~~I~ec~~f~~GVa 141 (829)
T KOG2280|consen 64 PYIRIFNIS-GQLLGRILWKHGELIGMGWSDD-EELICVQKDGTVHVYGLLGEFIESNSVGFESQMSDIVECRFFHNGVA 141 (829)
T ss_pred eeEEEEecc-ccchHHHHhcCCCeeeecccCC-ceEEEEeccceEEEeecchhhhcccccccccccCceeEEEEecCceE
Confidence 457777776 44443333 2457888999876 6688889999999999864322110 1112334555555556655
Q ss_pred EEEEeCCeEEEEEcCCCCCceeEEEeecCCCceEEEE-EeCCCC--EEEEEEcCCeEEEEECC--CCcEEEeccCCCCee
Q 003236 739 LASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCV-FHPTFP--SLLVIGCYETLELWNMT--ENKTLTLSAHDKLVS 813 (837)
Q Consensus 739 LasgsDg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~-fspdg~--~L~sgs~dg~I~IwDl~--s~~~~~l~~h~~~V~ 813 (837)
+.+.++..+.+-++..... .....++.......+-. +.|... .++-....-...++-.. ......+......+.
T Consensus 142 vlt~~g~v~~i~~~~~~~~-~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~~~~~q~~~~~~q~~~~~~~~~~~~ 220 (829)
T KOG2280|consen 142 VLTVSGQVILINGVEEPKL-RKMPDIPYNELPKSCWTVFQPHRQSTILLDVDVAVGLHICQVEESRVQLHALSWPNSSVV 220 (829)
T ss_pred EEecCCcEEEEcCCCcchh-hhCCCCCCccCCCcceeEecCCCcceeEEeechhhhhcccceecccccccccCCCCceEE
Confidence 5555454555554443210 01111111111111111 112111 11111100001111111 122223333345677
Q ss_pred EEEEeCCCCEEEEEECCCcEEE
Q 003236 814 SLAASTVNGMVASASHDKCVKI 835 (837)
Q Consensus 814 sla~spdg~~LaSgs~DG~I~I 835 (837)
.+.+||+.++|+--..+|.|.+
T Consensus 221 ki~VS~n~~~laLyt~~G~i~~ 242 (829)
T KOG2280|consen 221 KISVSPNRRFLALYTETGKIWV 242 (829)
T ss_pred EEEEcCCcceEEEEecCCcEEE
Confidence 7888888888888888887754
|
|
| >COG5290 IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=90.71 E-value=6.6 Score=46.87 Aligned_cols=96 Identities=14% Similarity=0.257 Sum_probs=57.3
Q ss_pred eEEEEecCCCEEEEEEcCC-----eEEEEECCC---CeEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCeEEEEEcCCCCC
Q 003236 686 TQMRFQPRLGRILAAAIEN-----YISILDVET---QVCRLKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSK 757 (837)
Q Consensus 686 ~sl~~sp~g~~llags~dg-----~I~iwDl~s---~~~~~~l~~h~~~V~sl~~spdg~~LasgsDg~I~IwDl~s~~~ 757 (837)
..+.|-|.|..+++...|| .|.++..+. |..-.. .+....+..++|+-....++.+..+.|++|-..+-
T Consensus 250 ~~LSWkpqgS~~ati~td~~~~S~~ViFfErNGLrHGef~lr-~~~dEk~~~~~wn~~s~vlav~~~n~~~lwttkNy-- 326 (1243)
T COG5290 250 HQLSWKPQGSKYATIGTDGCSTSESVIFFERNGLRHGEFDLR-VGCDEKAFLENWNLLSTVLAVAEGNLLKLWTTKNY-- 326 (1243)
T ss_pred hccccccCCceeeeeccCCCCCcceEEEEccCCcccCCcccc-CCchhhhhhhhhhHHHHHHHHhhcceEEEEEccce--
Confidence 3488999999999887654 355554321 211111 12344567788887777777777889999987553
Q ss_pred ceeEEEeecCCCceEEEEEeCCCCEEEE
Q 003236 758 GECIHELSCTGNKFHSCVFHPTFPSLLV 785 (837)
Q Consensus 758 ~~~i~~~~~~~~~I~sv~fspdg~~L~s 785 (837)
.........-..+.-+.|+|....-+.
T Consensus 327 -hWYLK~e~~ip~~s~vkwhpe~~nTl~ 353 (1243)
T COG5290 327 -HWYLKVERQIPGISYVKWHPEEKNTLL 353 (1243)
T ss_pred -EEEEEEeecCCCcceeeeccccCcEEE
Confidence 222222333345566778886544333
|
|
| >KOG2247 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=90.40 E-value=0.031 Score=62.43 Aligned_cols=141 Identities=16% Similarity=0.296 Sum_probs=98.8
Q ss_pred eeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEe--CCeEEEEEcCCCCCceeEE
Q 003236 685 ATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS--DELVRVWSIGSGSKGECIH 762 (837)
Q Consensus 685 i~sl~~sp~g~~llags~dg~I~iwDl~s~~~~~~l~~h~~~V~sl~~spdg~~Lasgs--Dg~I~IwDl~s~~~~~~i~ 762 (837)
.....|.+.+..+++++.+..+..||-...... .+. .++....++|+.++..++... .+.+++||+.+... .
T Consensus 37 pi~~~w~~e~~nlavaca~tiv~~YD~agq~~l-e~n-~tg~aldm~wDkegdvlavlAek~~piylwd~n~eyt-q--- 110 (615)
T KOG2247|consen 37 PIIHRWRPEGHNLAVACANTIVIYYDKAGQVIL-ELN-PTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYT-Q--- 110 (615)
T ss_pred cceeeEecCCCceehhhhhhHHHhhhhhcceec-ccC-CchhHhhhhhccccchhhhhhhcCCCeeechhhhhhH-H---
Confidence 345667788888999999999999986543222 222 345566788988887666544 78999999987532 1
Q ss_pred EeecCC-CceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEEEecc-CCCCeeEEEEeCCCCEEEEEECCCc
Q 003236 763 ELSCTG-NKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSA-HDKLVSSLAASTVNGMVASASHDKC 832 (837)
Q Consensus 763 ~~~~~~-~~I~sv~fspdg~~L~sgs~dg~I~IwDl~s~~~~~l~~-h~~~V~sla~spdg~~LaSgs~DG~ 832 (837)
.++... ..-.-+.|++.+..++.+...+.+.||+..+.+.....+ |...+++++|.+.+ +.+.++.|..
T Consensus 111 qLE~gg~~s~sll~wsKg~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~lEd-~vil~dcd~~ 181 (615)
T KOG2247|consen 111 QLESGGTSSKSLLAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVTLED-YVILCDCDNT 181 (615)
T ss_pred HHhccCcchHHHHhhccCCccccccccccceEEEeccchhhhhhhcccccceeEEEecccc-eeeecCcHHH
Confidence 111111 111226899999999999999999999998887775555 99999999999876 4455555543
|
|
| >PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins | Back alignment and domain information |
|---|
Probab=90.38 E-value=42 Score=39.25 Aligned_cols=143 Identities=12% Similarity=0.056 Sum_probs=75.0
Q ss_pred CCCcEEEEeCCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeEEeeccc---cceEEEEEcCC
Q 003236 575 HDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHS---TTVMSLDFHPS 651 (837)
Q Consensus 575 ~Dg~I~VWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~~~~~~~~~~~h~---~~V~sl~fspd 651 (837)
..+.+.++|. +|.....+.........+.+.++|.+++... ..++.+|+... .+..+.-.. ..-..+.+.|+
T Consensus 126 ~~~~~~~iD~-~G~Vrw~~~~~~~~~~~~~~l~nG~ll~~~~--~~~~e~D~~G~--v~~~~~l~~~~~~~HHD~~~l~n 200 (477)
T PF05935_consen 126 SSSYTYLIDN-NGDVRWYLPLDSGSDNSFKQLPNGNLLIGSG--NRLYEIDLLGK--VIWEYDLPGGYYDFHHDIDELPN 200 (477)
T ss_dssp BEEEEEEEET-TS-EEEEE-GGGT--SSEEE-TTS-EEEEEB--TEEEEE-TT----EEEEEE--TTEE-B-S-EEE-TT
T ss_pred CCceEEEECC-CccEEEEEccCccccceeeEcCCCCEEEecC--CceEEEcCCCC--EEEeeecCCcccccccccEECCC
Confidence 4556677774 3455554433222222266778888877665 78888888743 233332222 11345777788
Q ss_pred CCeEEEEEe-------C-----CCcEEEEECCCCeeeeEEec--------C--------------------CCeeEEEEe
Q 003236 652 KEDLLCSCD-------N-----NSEIRYWSINNGSCAGVFKC--------Q--------------------SGATQMRFQ 691 (837)
Q Consensus 652 g~~llasgs-------~-----Dg~I~vwDl~t~~~i~~~~~--------~--------------------~~i~sl~~s 691 (837)
|+.++++.. . .-.|..+| .+|+.+..+.. . -.+.++.+.
T Consensus 201 Gn~L~l~~~~~~~~~~~~~~~~~D~Ivevd-~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~~~~~DW~H~Nsi~yd 279 (477)
T PF05935_consen 201 GNLLILASETKYVDEDKDVDTVEDVIVEVD-PTGEVVWEWDFFDHLDPYRDTVLKPYPYGDISGSGGGRDWLHINSIDYD 279 (477)
T ss_dssp S-EEEEEEETTEE-TS-EE---S-EEEEE--TTS-EEEEEEGGGTS-TT--TTGGT--SSSSS-SSTTSBS--EEEEEEE
T ss_pred CCEEEEEeecccccCCCCccEecCEEEEEC-CCCCEEEEEehHHhCCcccccccccccccccccCCCCCCccccCccEEe
Confidence 876665541 0 12355566 66766665442 0 136889999
Q ss_pred cCCCEEEEEEcC-CeEEEEECCCCeEEEEEcCC
Q 003236 692 PRLGRILAAAIE-NYISILDVETQVCRLKLQGH 723 (837)
Q Consensus 692 p~g~~llags~d-g~I~iwDl~s~~~~~~l~~h 723 (837)
+..+.|++.+.. ..|..+|.++++....+..+
T Consensus 280 ~~dd~iivSsR~~s~V~~Id~~t~~i~Wilg~~ 312 (477)
T PF05935_consen 280 PSDDSIIVSSRHQSAVIKIDYRTGKIKWILGPP 312 (477)
T ss_dssp TTTTEEEEEETTT-EEEEEE-TTS-EEEEES-S
T ss_pred CCCCeEEEEcCcceEEEEEECCCCcEEEEeCCC
Confidence 977777777775 58999999999888887655
|
Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A. |
| >PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3 | Back alignment and domain information |
|---|
Probab=90.30 E-value=36 Score=38.32 Aligned_cols=181 Identities=13% Similarity=0.191 Sum_probs=103.8
Q ss_pred CeEEEEEeCCCcEEEEECCCCeeeeEEecCCCeeEEEEec----CCCE--EEEEEc-C---CeEEEEECC--CCeEEEEE
Q 003236 653 EDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQP----RLGR--ILAAAI-E---NYISILDVE--TQVCRLKL 720 (837)
Q Consensus 653 ~~llasgs~Dg~I~vwDl~t~~~i~~~~~~~~i~sl~~sp----~g~~--llags~-d---g~I~iwDl~--s~~~~~~l 720 (837)
..+++....++-+.+||+. |+.+..+.. +.++.+.+-. .++. |++++. + +.|++|.+. ++. +..+
T Consensus 68 kSlIigTdK~~GL~VYdL~-Gk~lq~~~~-Gr~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~id~~~g~-L~~v 144 (381)
T PF02333_consen 68 KSLIIGTDKKGGLYVYDLD-GKELQSLPV-GRPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFRIDPDTGE-LTDV 144 (381)
T ss_dssp G-EEEEEETTTEEEEEETT-S-EEEEE-S-S-EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEEEETTTTE-EEE-
T ss_pred cceEEEEeCCCCEEEEcCC-CcEEEeecC-CCcceeeeecceecCCceEEEEEEecCcCCCCeEEEEEecCCCCc-ceEc
Confidence 3466677788899999998 555555543 4444443321 3333 344443 2 468888664 343 3332
Q ss_pred cC-------CCCCEEEEEEc--C-CCCEEEEEe--CCeEEEEEcCCCCC----ceeEEEeecCCCceEEEEEeCCCCEEE
Q 003236 721 QG-------HKNQVHSVCWN--T-SGEYLASVS--DELVRVWSIGSGSK----GECIHELSCTGNKFHSCVFHPTFPSLL 784 (837)
Q Consensus 721 ~~-------h~~~V~sl~~s--p-dg~~Lasgs--Dg~I~IwDl~s~~~----~~~i~~~~~~~~~I~sv~fspdg~~L~ 784 (837)
.. ....+..+|+- + +|.+.+... +|.+.-|.+..... .+.++.|.. ...+..|+.......|+
T Consensus 145 ~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~~-~sQ~EGCVVDDe~g~LY 223 (381)
T PF02333_consen 145 TDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFKV-GSQPEGCVVDDETGRLY 223 (381)
T ss_dssp CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE--SS-EEEEEEETTTTEEE
T ss_pred CCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEecC-CCcceEEEEecccCCEE
Confidence 21 12346777773 3 466555444 88888888753222 245666664 45899999999999999
Q ss_pred EEEcCCeEEEEECCCC-----cEEEe-c--cCCCCeeEEEEeC--CC-CEEEEEE-CCCcEEEeC
Q 003236 785 VIGCYETLELWNMTEN-----KTLTL-S--AHDKLVSSLAAST--VN-GMVASAS-HDKCVKIWK 837 (837)
Q Consensus 785 sgs~dg~I~IwDl~s~-----~~~~l-~--~h~~~V~sla~sp--dg-~~LaSgs-~DG~I~IWd 837 (837)
++-.+.-|.-|+.+-. ..+.. . .....|-.|++-. ++ .||+.++ .+++..|||
T Consensus 224 vgEE~~GIW~y~Aep~~~~~~~~v~~~~g~~l~aDvEGlaly~~~~g~gYLivSsQG~~sf~Vy~ 288 (381)
T PF02333_consen 224 VGEEDVGIWRYDAEPEGGNDRTLVASADGDGLVADVEGLALYYGSDGKGYLIVSSQGDNSFAVYD 288 (381)
T ss_dssp EEETTTEEEEEESSCCC-S--EEEEEBSSSSB-S-EEEEEEEE-CCC-EEEEEEEGGGTEEEEEE
T ss_pred EecCccEEEEEecCCCCCCcceeeecccccccccCccceEEEecCCCCeEEEEEcCCCCeEEEEe
Confidence 9999999999987522 22222 1 2345677887753 33 3555544 566777774
|
1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A. |
| >PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes | Back alignment and domain information |
|---|
Probab=89.75 E-value=5.8 Score=41.79 Aligned_cols=129 Identities=15% Similarity=0.149 Sum_probs=74.2
Q ss_pred EEEEECCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEe--CC--eEEEEEcCCCC-CceeEE--EeecCCCceEEEEEeC
Q 003236 706 ISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS--DE--LVRVWSIGSGS-KGECIH--ELSCTGNKFHSCVFHP 778 (837)
Q Consensus 706 I~iwDl~s~~~~~~l~~h~~~V~sl~~spdg~~Lasgs--Dg--~I~IwDl~s~~-~~~~i~--~~~~~~~~I~sv~fsp 778 (837)
-.+||+.+++....-........+-.+.+||++|.+|+ +| .+++++..... ...... ..-......-++..-+
T Consensus 48 s~~yD~~tn~~rpl~v~td~FCSgg~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT~~~L~ 127 (243)
T PF07250_consen 48 SVEYDPNTNTFRPLTVQTDTFCSGGAFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQSGRWYPTATTLP 127 (243)
T ss_pred EEEEecCCCcEEeccCCCCCcccCcCCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECcccccCCCccccceECC
Confidence 45788888754332222222333446778999999988 44 68888865411 001111 1112344556677788
Q ss_pred CCCEEEEEEcCC-eEEEEECCC--CcEEEe--cc------CCCCeeEEEEeCCCCEEEEEECCCcEE
Q 003236 779 TFPSLLVIGCYE-TLELWNMTE--NKTLTL--SA------HDKLVSSLAASTVNGMVASASHDKCVK 834 (837)
Q Consensus 779 dg~~L~sgs~dg-~I~IwDl~s--~~~~~l--~~------h~~~V~sla~spdg~~LaSgs~DG~I~ 834 (837)
||+.|++|+... +..+|.-.. .....+ .. ....--.+...|+|++++.+..+..|.
T Consensus 128 DG~vlIvGG~~~~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~~s~i~ 194 (243)
T PF07250_consen 128 DGRVLIVGGSNNPTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANRGSIIY 194 (243)
T ss_pred CCCEEEEeCcCCCcccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEcCCcEEE
Confidence 999999998876 566666432 122211 11 111122456679999999998776554
|
Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium []. |
| >PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes [] | Back alignment and domain information |
|---|
Probab=89.74 E-value=6.8 Score=47.25 Aligned_cols=113 Identities=15% Similarity=0.135 Sum_probs=76.0
Q ss_pred CeEEEEEcC--CCCEEEEEECCCcEEEEeCCC-------C----e---------EEEEeccCCCCeEEEEEc--CCCCEE
Q 003236 557 KVESCHFSP--DGKLLATGGHDKKAVLWCTES-------F----T---------VKSTLEEHTQWITDVRFS--PSLSRL 612 (837)
Q Consensus 557 ~V~sl~fSp--dg~~Lasgs~Dg~I~VWd~~t-------~----~---------~~~~l~~h~~~I~~l~fs--pdg~~L 612 (837)
.|+-|.... +...|+.+.+||.|.+|.+++ . + +...+. ....++.++++ ...++|
T Consensus 102 tIN~i~v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~-v~~SaWGLdIh~~~~~rlI 180 (717)
T PF08728_consen 102 TINFIKVGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLR-VGASAWGLDIHDYKKSRLI 180 (717)
T ss_pred eeeEEEecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEee-cCCceeEEEEEecCcceEE
Confidence 355554443 556899999999999996521 1 0 112222 34578999998 778889
Q ss_pred EEEeCCCeEEEEEcCCC--CceeEEeeccccceEEEEEcCCC--C---eEEEEEeCCCcEEEEEC
Q 003236 613 ATSSADRTVRVWDTENP--DYSLRTFTGHSTTVMSLDFHPSK--E---DLLCSCDNNSEIRYWSI 670 (837)
Q Consensus 613 atgs~Dg~I~IWDl~~~--~~~~~~~~~h~~~V~sl~fspdg--~---~llasgs~Dg~I~vwDl 670 (837)
|+++....|.||-+... +.....-..|...|-+|+|.++. . ..+++++-.|.+.+|++
T Consensus 181 AVSsNs~~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 181 AVSSNSQEVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred EEecCCceEEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 99988888888866542 21111122366778999998754 1 36778888999999887
|
RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance []. |
| >PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast) | Back alignment and domain information |
|---|
Probab=89.59 E-value=55 Score=39.41 Aligned_cols=158 Identities=11% Similarity=0.122 Sum_probs=90.3
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCcee--EEeecccc------ceEEEEEcCCCCeEEEEEe-CC--Cc
Q 003236 596 HTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSL--RTFTGHST------TVMSLDFHPSKEDLLCSCD-NN--SE 664 (837)
Q Consensus 596 h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~~~~~~--~~~~~h~~------~V~sl~fspdg~~llasgs-~D--g~ 664 (837)
-.+.|..|.|..+++.+++...+|.|.+||...+.... ..-..+.. .|.........+.+++.+. .+ -.
T Consensus 128 l~~kvv~Ik~~~~~~~I~vvl~nG~i~~~d~~~~~l~~~~~l~~~~~~~v~ys~fv~~~~~~~~~~~ll~v~~~~~~k~~ 207 (670)
T PF10395_consen 128 LDDKVVGIKFSSDGKIIYVVLENGSIQIYDFSENSLEKVPQLKLKSSINVSYSKFVNDFELENGKDLLLTVSQLSNSKLS 207 (670)
T ss_pred cccceEEEEEecCCCEEEEEEcCCcEEEEeccccccccccccccccccceehhhhhcccccccCCceEEEEEEcCCCcEE
Confidence 36789999999999999999999999999993322111 11111222 2222221112234444444 12 35
Q ss_pred EEEEEC--CCCeeeeEE---ecCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEcCC-----C-CCEEEEEEc
Q 003236 665 IRYWSI--NNGSCAGVF---KCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGH-----K-NQVHSVCWN 733 (837)
Q Consensus 665 I~vwDl--~t~~~i~~~---~~~~~i~sl~~sp~g~~llags~dg~I~iwDl~s~~~~~~l~~h-----~-~~V~sl~~s 733 (837)
++++.+ ....+...- ..........|....+.++.- .++.|.+|++..-+...++.-. . ..+.++. .
T Consensus 208 ykL~~l~~~~~~~~El~s~~~e~~~~~~s~f~Y~~G~LY~l-~~~~i~~ysip~f~~~~tI~l~~ii~~~~~~~vSl~-~ 285 (670)
T PF10395_consen 208 YKLISLSNESSSIFELSSTILENFGLEDSKFCYQFGKLYQL-SKKTISSYSIPNFQIQKTISLPSIIDKESDDLVSLK-P 285 (670)
T ss_pred EEEEEeccCCcceEEeehheeccCCcccceEEEeCCEEEEE-eCCEEEEEEcCCceEEEEEEechhhccccccceEee-c
Confidence 677777 333333321 112233444444445555555 7789999999877655554321 1 2343443 3
Q ss_pred CCCCEEEEEeCCeEEEEEcCCC
Q 003236 734 TSGEYLASVSDELVRVWSIGSG 755 (837)
Q Consensus 734 pdg~~LasgsDg~I~IwDl~s~ 755 (837)
|..+.++.+.++.|++.|+.-.
T Consensus 286 ~s~nRvLLs~~nkIyLld~~~~ 307 (670)
T PF10395_consen 286 PSPNRVLLSVNNKIYLLDLKFE 307 (670)
T ss_pred CCCCeEEEEcCCEEEEEeehhh
Confidence 4556677777889999998754
|
It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex []. |
| >PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin | Back alignment and domain information |
|---|
Probab=89.34 E-value=2.2 Score=44.38 Aligned_cols=66 Identities=12% Similarity=0.145 Sum_probs=52.7
Q ss_pred EecCCCEEEEEEcCCeEEEEECCCCeEEEEE-------c-------CCCCCEEEEEEcCCCCEEEEEeCCeEEEEEcCCC
Q 003236 690 FQPRLGRILAAAIENYISILDVETQVCRLKL-------Q-------GHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSG 755 (837)
Q Consensus 690 ~sp~g~~llags~dg~I~iwDl~s~~~~~~l-------~-------~h~~~V~sl~~spdg~~LasgsDg~I~IwDl~s~ 755 (837)
+...+.++++.+.+|.+++||+.+++.+..- . .....|..+.++.+|.-|++-++|..+.|+..-+
T Consensus 18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~lsng~~y~y~~~L~ 97 (219)
T PF07569_consen 18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLSNGDSYSYSPDLG 97 (219)
T ss_pred EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEeCCCEEEeccccc
Confidence 4456789999999999999999998765432 1 2446788899999999888888888999987654
|
These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus |
| >TIGR03032 conserved hypothetical protein TIGR03032 | Back alignment and domain information |
|---|
Probab=89.31 E-value=37 Score=37.03 Aligned_cols=105 Identities=10% Similarity=0.002 Sum_probs=66.5
Q ss_pred EEECCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEE
Q 003236 708 ILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVI 786 (837)
Q Consensus 708 iwDl~s~~~~~~l~~h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fspdg~~L~sg 786 (837)
++|+.+++.+..-- .-..+..|. +|++.++-+ .|.|..+|..++.. +.+..+ .+....++|. |++++++
T Consensus 189 vidv~s~evl~~GL---smPhSPRWh-dgrLwvldsgtGev~~vD~~~G~~-e~Va~v---pG~~rGL~f~--G~llvVg 258 (335)
T TIGR03032 189 VIDIPSGEVVASGL---SMPHSPRWY-QGKLWLLNSGRGELGYVDPQAGKF-QPVAFL---PGFTRGLAFA--GDFAFVG 258 (335)
T ss_pred EEEeCCCCEEEcCc---cCCcCCcEe-CCeEEEEECCCCEEEEEcCCCCcE-EEEEEC---CCCCccccee--CCEEEEE
Confidence 35666665443211 122334454 566666666 88999999887643 333333 3456777887 7777766
Q ss_pred EcC--------------------CeEEEEECCCCcEE---EeccCCCCeeEEEEeCCCC
Q 003236 787 GCY--------------------ETLELWNMTENKTL---TLSAHDKLVSSLAASTVNG 822 (837)
Q Consensus 787 s~d--------------------g~I~IwDl~s~~~~---~l~~h~~~V~sla~spdg~ 822 (837)
-+. .-|.+.|+.+|..+ .+.+.-..|.++++-|.-+
T Consensus 259 mSk~R~~~~f~glpl~~~l~~~~CGv~vidl~tG~vv~~l~feg~v~EifdV~vLPg~r 317 (335)
T TIGR03032 259 LSKLRESRVFGGLPIEERLDALGCGVAVIDLNSGDVVHWLRFEGVIEEIYDVAVLPGVR 317 (335)
T ss_pred eccccCCCCcCCCchhhhhhhhcccEEEEECCCCCEEEEEEeCCceeEEEEEEEecCCC
Confidence 431 24788899999977 5556667788888888644
|
This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown. |
| >TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family | Back alignment and domain information |
|---|
Probab=89.26 E-value=48 Score=38.33 Aligned_cols=280 Identities=10% Similarity=0.062 Sum_probs=0.0
Q ss_pred EEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEe-------ccCCCCeEEEEEcCCC------CEEE
Q 003236 547 EFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTL-------EEHTQWITDVRFSPSL------SRLA 613 (837)
Q Consensus 547 ~~~~l~~H~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l-------~~h~~~I~~l~fspdg------~~La 613 (837)
.+.++...-..-+.|+|.|||++|++--..|.|++++..++...... ....+....|+|+|+- .+|+
T Consensus 21 ~~~~va~GL~~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF~~~~~n~~lY 100 (454)
T TIGR03606 21 DKKVLLSGLNKPWALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDFMQEKGNPYVY 100 (454)
T ss_pred EEEEEECCCCCceEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCccccCCCcEEE
Q ss_pred EEe----------CCCeEEEEEcCCC----CceeEEeeccccc----eEEEEEcCCCCeEEEEEeC--------------
Q 003236 614 TSS----------ADRTVRVWDTENP----DYSLRTFTGHSTT----VMSLDFHPSKEDLLCSCDN-------------- 661 (837)
Q Consensus 614 tgs----------~Dg~I~IWDl~~~----~~~~~~~~~h~~~----V~sl~fspdg~~llasgs~-------------- 661 (837)
+.. ....|.-|.+... ......+...... -..|.|.||+..++.+|+.
T Consensus 101 vsyt~~~~~~~~~~~~~I~R~~l~~~~~~l~~~~~Il~~lP~~~~H~GgrI~FgPDG~LYVs~GD~g~~~~~n~~~~~~a 180 (454)
T TIGR03606 101 ISYTYKNGDKELPNHTKIVRYTYDKSTQTLEKPVDLLAGLPAGNDHNGGRLVFGPDGKIYYTIGEQGRNQGANFFLPNQA 180 (454)
T ss_pred EEEeccCCCCCccCCcEEEEEEecCCCCccccceEEEecCCCCCCcCCceEEECCCCcEEEEECCCCCCCcccccCcchh
Q ss_pred -----------------CCcEEEEECCCC-----------eeeeEEecCCCeeEEEEecCCCEEEEEEcCCeEEEEECCC
Q 003236 662 -----------------NSEIRYWSINNG-----------SCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVET 713 (837)
Q Consensus 662 -----------------Dg~I~vwDl~t~-----------~~i~~~~~~~~i~sl~~sp~g~~llags~dg~I~iwDl~s 713 (837)
.|+|.-.|.... ..............++|.| .+.|+++..... .
T Consensus 181 Q~~~~~~~~~~~d~~~~~GkILRin~DGsiP~dNPf~~g~~~eIyA~G~RNp~Gla~dp-~G~Lw~~e~Gp~-------~ 252 (454)
T TIGR03606 181 QHTPTQQELNGKDYHAYMGKVLRLNLDGSIPKDNPSINGVVSHIFTYGHRNPQGLAFTP-DGTLYASEQGPN-------S 252 (454)
T ss_pred ccccccccccccCcccCceEEEEEcCCCCCCCCCCccCCCcceEEEEeccccceeEECC-CCCEEEEecCCC-------C
Q ss_pred CeEEEEEcC--CCCCEEEEEEcCCCCEEEEEe-CCe---------------EEEEEcCCCCCceeEEEee----------
Q 003236 714 QVCRLKLQG--HKNQVHSVCWNTSGEYLASVS-DEL---------------VRVWSIGSGSKGECIHELS---------- 765 (837)
Q Consensus 714 ~~~~~~l~~--h~~~V~sl~~spdg~~Lasgs-Dg~---------------I~IwDl~s~~~~~~i~~~~---------- 765 (837)
...+..+.. +-++-.+--+..+..+..... ... +.+-+..+.........+.
T Consensus 253 ~DEiN~I~~G~NYGWP~~~G~~~~~~~~~~~ys~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~g~~~P~~~~~~~~~~~~ 332 (454)
T TIGR03606 253 DDELNIIVKGGNYGWPNVAGYKDDSGYVYANYSAAANKSIKTLAQNGIPAGVPVTKESEWTAKNFVPPLKTLYTVQDTYN 332 (454)
T ss_pred CcEEEEeccCCcCCCCceeecCccccccccccccccccccccccccccCcCccccccccccCccccCCceeccccccccc
Q ss_pred -------------cCCCceEEEEEeC---------CCCEEEEEEcCCeEEEEECCCC------cEEEeccCCCCeeEEEE
Q 003236 766 -------------CTGNKFHSCVFHP---------TFPSLLVIGCYETLELWNMTEN------KTLTLSAHDKLVSSLAA 817 (837)
Q Consensus 766 -------------~~~~~I~sv~fsp---------dg~~L~sgs~dg~I~IwDl~s~------~~~~l~~h~~~V~sla~ 817 (837)
...-...+++|-. ++..|+.+-..+.|....++.. +...+....+.|.+|..
T Consensus 333 ~~~~~~~~~~~~~~psiapsg~~~y~~~g~~~p~w~g~llv~~L~~~~l~r~~l~~~~~~v~~~~~~~~~~~~RiRdv~~ 412 (454)
T TIGR03606 333 YNDATCGEMTYICWPTIAPSSAYYYKGGEKGITGWENSLLIPSLKRGVIYRIKLDPDYSTVYGDAVPMFKTNNRYRDVIA 412 (454)
T ss_pred cccccccccccccCCCcCCceeEEEecCcccCcccCCCEEEEEcCCCeEEEEEecCCcceecceeEEeecCCCeeEEEEE
Q ss_pred eCCC-CEEEEEECCCcEE
Q 003236 818 STVN-GMVASASHDKCVK 834 (837)
Q Consensus 818 spdg-~~LaSgs~DG~I~ 834 (837)
.||| .+.+..+.+|.+.
T Consensus 413 ~pDg~~iy~~td~~g~~~ 430 (454)
T TIGR03606 413 SPDGNVLYVATDNFGNVQ 430 (454)
T ss_pred CCCCCEEEEEEcCCCccc
|
PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis. |
| >KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=88.78 E-value=29 Score=43.18 Aligned_cols=195 Identities=12% Similarity=0.072 Sum_probs=0.0
Q ss_pred cEEEEeCCCCeEEEEeccCCC----CeEEEEEcCCCCE-EEEEeC------------CCeEEEEEcCCCCceeEEeeccc
Q 003236 578 KAVLWCTESFTVKSTLEEHTQ----WITDVRFSPSLSR-LATSSA------------DRTVRVWDTENPDYSLRTFTGHS 640 (837)
Q Consensus 578 ~I~VWd~~t~~~~~~l~~h~~----~I~~l~fspdg~~-Latgs~------------Dg~I~IWDl~~~~~~~~~~~~h~ 640 (837)
.|+++|..+++.+..+....+ .|..+.|+..... ++.++. +|.++.|++-.....+..+....
T Consensus 854 ~I~~~d~~s~~~~~~~~l~~ne~a~~v~~~~fs~~~~~~~~~v~~~~~~~l~~~~~~~g~~ytyk~~~~g~~lellh~T~ 933 (1205)
T KOG1898|consen 854 SIRVFDPKSGKIICLVELGQNEAAFSVCAVDFSSSEYQPFVAVGVATTEQLDSKSISSGFVYTYKFVRNGDKLELLHKTE 933 (1205)
T ss_pred eEEEEcCCCCceEEEEeecCCcchhheeeeeeccCCCceEEEEEeeccccccccccCCCceEEEEEEecCceeeeeeccC
Q ss_pred cceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeeEEecCC-CeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEE
Q 003236 641 TTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQS-GATQMRFQPRLGRILAAAIENYISILDVETQVCRLK 719 (837)
Q Consensus 641 ~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~~~-~i~sl~~sp~g~~llags~dg~I~iwDl~s~~~~~~ 719 (837)
-+-.-.+.+|..+.++ ++....+++||+...+.++...... +..-....-.+.++++|.
T Consensus 934 ~~~~v~Ai~~f~~~~L--agvG~~l~~YdlG~K~lLRk~e~k~~p~~Is~iqt~~~RI~VgD------------------ 993 (1205)
T KOG1898|consen 934 IPGPVGAICPFQGRVL--AGVGRFLRLYDLGKKKLLRKCELKFIPNRISSIQTYGARIVVGD------------------ 993 (1205)
T ss_pred CCccceEEeccCCEEE--EecccEEEEeeCChHHHHhhhhhccCceEEEEEeecceEEEEee------------------
Q ss_pred EcCCCCCEEEEEEcCCCCEEEEEeCCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCC
Q 003236 720 LQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTE 799 (837)
Q Consensus 720 l~~h~~~V~sl~~spdg~~LasgsDg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fspdg~~L~sgs~dg~I~IwDl~s 799 (837)
....|.-+.|.++++.|+.-.|+.+.-| ..+.+.-|...++.+..-|.+.+..+..
T Consensus 994 ---~qeSV~~~~y~~~~n~l~~fadD~~pR~---------------------Vt~~~~lD~~tvagaDrfGNi~~vR~P~ 1049 (1205)
T KOG1898|consen 994 ---IQESVHFVRYRREDNQLIVFADDPVPRH---------------------VTALELLDYDTVAGADRFGNIAVVRIPP 1049 (1205)
T ss_pred ---ccceEEEEEEecCCCeEEEEeCCCccce---------------------eeEEEEecCCceeeccccCcEEEEECCC
Q ss_pred CcEEEeccCCCCeeEEEE
Q 003236 800 NKTLTLSAHDKLVSSLAA 817 (837)
Q Consensus 800 ~~~~~l~~h~~~V~sla~ 817 (837)
....... |+.....++|
T Consensus 1050 d~~e~~~-edpt~~k~~~ 1066 (1205)
T KOG1898|consen 1050 DVSEEAS-EDPTELKIAW 1066 (1205)
T ss_pred cchhhhc-cCCcccccee
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 837 | ||||
| 2ymu_A | 577 | Structure Of A Highly Repetitive Propeller Structur | 5e-25 | ||
| 3mxx_A | 315 | Crystal Structure Of Wdr5 Mutant (S62a) Length = 31 | 1e-20 | ||
| 2gnq_A | 336 | Structure Of Wdr5 Length = 336 | 1e-20 | ||
| 1vyh_C | 410 | Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410 | 1e-20 | ||
| 2xl2_A | 334 | Wdr5 In Complex With An Rbbp5 Peptide Recruited To | 2e-20 | ||
| 3emh_A | 318 | Structural Basis Of Wdr5-Mll Interaction Length = 3 | 2e-20 | ||
| 2h13_A | 317 | Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length | 2e-20 | ||
| 2h9l_A | 329 | Wdr5delta23 Length = 329 | 2e-20 | ||
| 4a7j_A | 318 | Symmetric Dimethylation Of H3 Arginine 2 Is A Novel | 2e-20 | ||
| 2g9a_A | 311 | Structural Basis For The Specific Recognition Of Me | 2e-20 | ||
| 3smr_A | 312 | Crystal Structure Of Human Wd Repeat Domain 5 With | 2e-20 | ||
| 3psl_A | 318 | Fine-Tuning The Stimulation Of Mll1 Methyltransfera | 2e-20 | ||
| 2h9m_A | 313 | Wdr5 In Complex With Unmodified H3k4 Peptide Length | 2e-20 | ||
| 2g99_A | 308 | Structural Basis For The Specific Recognition Of Me | 2e-20 | ||
| 2h68_A | 312 | Histone H3 Recognition And Presentation By The Wdr5 | 3e-20 | ||
| 3n0e_A | 315 | Crystal Structure Of Wdr5 Mutant (W330y) Length = 3 | 6e-20 | ||
| 2cnx_A | 315 | Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2. | 6e-20 | ||
| 3n0d_A | 315 | Crystal Structure Of Wdr5 Mutant (W330f) Length = 3 | 9e-20 | ||
| 2co0_A | 315 | Wdr5 And Unmodified Histone H3 Complex At 2.25 Angs | 3e-19 | ||
| 2ovp_B | 445 | Structure Of The Skp1-Fbw7 Complex Length = 445 | 8e-16 | ||
| 3fm0_A | 345 | Crystal Structure Of Wd40 Protein Ciao1 Length = 34 | 1e-15 | ||
| 1erj_A | 393 | Crystal Structure Of The C-Terminal Wd40 Domain Of | 2e-14 | ||
| 1erj_A | 393 | Crystal Structure Of The C-Terminal Wd40 Domain Of | 4e-05 | ||
| 3ow8_A | 321 | Crystal Structure Of The Wd Repeat-Containing Prote | 2e-12 | ||
| 2hes_X | 330 | Cytosolic Iron-sulphur Assembly Protein- 1 Length = | 3e-12 | ||
| 2hes_X | 330 | Cytosolic Iron-sulphur Assembly Protein- 1 Length = | 8e-07 | ||
| 3zey_7 | 318 | High-resolution Cryo-electron Microscopy Structure | 6e-11 | ||
| 4aow_A | 340 | Crystal Structure Of The Human Rack1 Protein At A R | 9e-11 | ||
| 4aow_A | 340 | Crystal Structure Of The Human Rack1 Protein At A R | 3e-04 | ||
| 2zkq_a | 317 | Structure Of A Mammalian Ribosomal 40s Subunit With | 1e-10 | ||
| 2zkq_a | 317 | Structure Of A Mammalian Ribosomal 40s Subunit With | 4e-04 | ||
| 1p22_A | 435 | Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex | 4e-10 | ||
| 1p22_A | 435 | Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex | 2e-04 | ||
| 2xzm_R | 343 | Crystal Structure Of The Eukaryotic 40s Ribosomal S | 5e-10 | ||
| 2xzm_R | 343 | Crystal Structure Of The Eukaryotic 40s Ribosomal S | 6e-04 | ||
| 4ggd_A | 431 | Structural Analysis Of Human Cdc20 Supports Multisi | 5e-10 | ||
| 4ggd_A | 431 | Structural Analysis Of Human Cdc20 Supports Multisi | 2e-04 | ||
| 2pbi_B | 354 | The Multifunctional Nature Of Gbeta5RGS9 REVEALED F | 5e-10 | ||
| 4gga_A | 420 | Structural Analysis Of Human Cdc20 Supports Multi-S | 7e-10 | ||
| 4gga_A | 420 | Structural Analysis Of Human Cdc20 Supports Multi-S | 4e-04 | ||
| 3iza_B | 1263 | Structure Of An Apoptosome-Procaspase-9 Card Comple | 7e-10 | ||
| 3iza_B | 1263 | Structure Of An Apoptosome-Procaspase-9 Card Comple | 3e-07 | ||
| 3sfz_A | 1249 | Crystal Structure Of Full-Length Murine Apaf-1 Leng | 8e-10 | ||
| 3sfz_A | 1249 | Crystal Structure Of Full-Length Murine Apaf-1 Leng | 1e-06 | ||
| 3shf_A | 1256 | Crystal Structure Of The R265s Mutant Of Full-Lengt | 8e-10 | ||
| 3shf_A | 1256 | Crystal Structure Of The R265s Mutant Of Full-Lengt | 1e-06 | ||
| 4ggc_A | 318 | Structural Analysis Of Human Cdc20 Supports Multi-S | 1e-09 | ||
| 3sn6_B | 351 | Crystal Structure Of The Beta2 Adrenergic Receptor- | 2e-08 | ||
| 2bcj_B | 340 | Crystal Structure Of G Protein-coupled Receptor Kin | 2e-08 | ||
| 1gg2_B | 340 | G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Bet | 2e-08 | ||
| 1a0r_B | 340 | Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA- | 3e-08 | ||
| 1got_B | 340 | Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimer | 3e-08 | ||
| 2ynp_A | 604 | Yeast Betaprime Cop 1-604 With Ktktn Motif Length = | 5e-07 | ||
| 2ynp_A | 604 | Yeast Betaprime Cop 1-604 With Ktktn Motif Length = | 3e-06 | ||
| 3mkq_A | 814 | Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subco | 5e-07 | ||
| 3mkq_A | 814 | Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subco | 4e-06 | ||
| 3cfs_B | 414 | Structural Basis Of The Interaction Of Rbap46RBAP48 | 5e-07 | ||
| 2yno_A | 310 | Yeast Betaprime Cop 1-304h6 Length = 310 | 9e-07 | ||
| 2yno_A | 310 | Yeast Betaprime Cop 1-304h6 Length = 310 | 5e-06 | ||
| 2ynn_A | 304 | Yeast Betaprime Cop 1-304 With Ktktn Motif Length = | 9e-07 | ||
| 2ynn_A | 304 | Yeast Betaprime Cop 1-304 With Ktktn Motif Length = | 5e-06 | ||
| 3cfv_B | 414 | Structural Basis Of The Interaction Of Rbap46RBAP48 | 2e-06 | ||
| 2yba_A | 422 | Crystal Structure Of Nurf55 In Complex With Histone | 2e-06 | ||
| 2xyi_A | 430 | Crystal Structure Of Nurf55 In Complex With A H4 Pe | 2e-06 | ||
| 3c99_A | 432 | Structural Basis Of Histone H4 Recognition By P55 L | 2e-06 | ||
| 3gfc_A | 425 | Crystal Structure Of Histone-Binding Protein Rbbp4 | 3e-06 | ||
| 3dm0_A | 694 | Maltose Binding Protein Fusion With Rack1 From A. T | 8e-06 | ||
| 3jrp_A | 379 | Sec13 With Nup145c (Aa109-179) Insertion Blade Leng | 1e-05 | ||
| 2pm6_B | 297 | Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF | 2e-05 | ||
| 2pm9_B | 297 | Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT O | 2e-05 | ||
| 3jro_A | 753 | Nup84-Nup145c-Sec13 Edge Element Of The Npc Lattice | 3e-05 | ||
| 3mks_B | 464 | Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH | 4e-05 | ||
| 3mks_B | 464 | Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH | 2e-04 | ||
| 3rfh_A | 319 | Crystal Structure Of The Yeast Rack1 Dimer In Space | 5e-05 | ||
| 3rfg_A | 319 | Crystal Structure Of The Yeast Rack1 Dimer In Space | 5e-05 | ||
| 1trj_A | 314 | Homology Model Of Yeast Rack1 Protein Fitted Into 1 | 5e-05 | ||
| 3izb_a | 319 | Localization Of The Small Subunit Ribosomal Protein | 5e-05 | ||
| 3frx_A | 319 | Crystal Structure Of The Yeast Orthologue Of Rack1, | 1e-04 | ||
| 1nex_B | 464 | Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Comp | 1e-04 | ||
| 1nex_B | 464 | Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Comp | 2e-04 | ||
| 3jyv_R | 313 | Structure Of The 40s Rrna And Proteins And PE TRNA | 1e-04 | ||
| 1nr0_A | 611 | Two Seven-Bladed Beta-Propeller Domains Revealed By | 2e-04 | ||
| 4gqb_B | 344 | Crystal Structure Of The Human Prmt5:mep50 Complex | 3e-04 | ||
| 3iz6_a | 380 | Localization Of The Small Subunit Ribosomal Protein | 3e-04 | ||
| 3zwl_B | 369 | Structure Of Eukaryotic Translation Initiation Fact | 4e-04 | ||
| 2pm7_B | 297 | Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF | 4e-04 | ||
| 4a11_B | 408 | Structure Of The Hsddb1-Hscsa Complex Length = 408 | 6e-04 |
| >pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure Length = 577 | Back alignment and structure |
|
| >pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a) Length = 315 | Back alignment and structure |
|
| >pdb|2GNQ|A Chain A, Structure Of Wdr5 Length = 336 | Back alignment and structure |
|
| >pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410 | Back alignment and structure |
|
| >pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel Site Length = 334 | Back alignment and structure |
|
| >pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction Length = 318 | Back alignment and structure |
|
| >pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length = 317 | Back alignment and structure |
|
| >pdb|2H9L|A Chain A, Wdr5delta23 Length = 329 | Back alignment and structure |
|
| >pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel Histone Mark That Supports Euchromatin Maintenance Length = 318 | Back alignment and structure |
|
| >pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 311 | Back alignment and structure |
|
| >pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With Compound Length = 312 | Back alignment and structure |
|
| >pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase Activity By A Histone H3 Based Peptide Mimetic Length = 318 | Back alignment and structure |
|
| >pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide Length = 313 | Back alignment and structure |
|
| >pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 308 | Back alignment and structure |
|
| >pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module Of The Mll1 Complex Length = 312 | Back alignment and structure |
|
| >pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y) Length = 315 | Back alignment and structure |
|
| >pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1 Angstrom Length = 315 | Back alignment and structure |
|
| >pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f) Length = 315 | Back alignment and structure |
|
| >pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom Length = 315 | Back alignment and structure |
|
| >pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex Length = 445 | Back alignment and structure |
|
| >pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1 Length = 345 | Back alignment and structure |
|
| >pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1 Length = 393 | Back alignment and structure |
|
| >pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1 Length = 393 | Back alignment and structure |
|
| >pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61 Length = 321 | Back alignment and structure |
|
| >pdb|2HES|X Chain X, Cytosolic Iron-sulphur Assembly Protein- 1 Length = 330 | Back alignment and structure |
|
| >pdb|2HES|X Chain X, Cytosolic Iron-sulphur Assembly Protein- 1 Length = 330 | Back alignment and structure |
|
| >pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The Trypanosoma Brucei Ribosome Length = 318 | Back alignment and structure |
|
| >pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A Resolution Of 2.45 Angstrom Length = 340 | Back alignment and structure |
|
| >pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A Resolution Of 2.45 Angstrom Length = 340 | Back alignment and structure |
|
| >pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An 80s Complex Obtained By Docking Homology Models Of The Rna And Proteins Into An 8.7 A Cryo-Em Map Length = 317 | Back alignment and structure |
|
| >pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An 80s Complex Obtained By Docking Homology Models Of The Rna And Proteins Into An 8.7 A Cryo-Em Map Length = 317 | Back alignment and structure |
|
| >pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex: Destruction Motif Binding And Lysine Specificity On The Scfbeta-Trcp1 Ubiquitin Ligase Length = 435 | Back alignment and structure |
|
| >pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex: Destruction Motif Binding And Lysine Specificity On The Scfbeta-Trcp1 Ubiquitin Ligase Length = 435 | Back alignment and structure |
|
| >pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit In Complex With Initiation Factor 1. This File Contains The 40s Subunit And Initiation Factor For Molecule 1 Length = 343 | Back alignment and structure |
|
| >pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit In Complex With Initiation Factor 1. This File Contains The 40s Subunit And Initiation Factor For Molecule 1 Length = 343 | Back alignment and structure |
|
| >pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite Degron Recognition By ApcC. Length = 431 | Back alignment and structure |
|
| >pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite Degron Recognition By ApcC. Length = 431 | Back alignment and structure |
|
| >pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS CRYSTAL Structure Length = 354 | Back alignment and structure |
|
| >pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site Degron Recognition By ApcC Length = 420 | Back alignment and structure |
|
| >pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site Degron Recognition By ApcC Length = 420 | Back alignment and structure |
|
| >pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1 Length = 1249 | Back alignment and structure |
|
| >pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1 Length = 1249 | Back alignment and structure |
|
| >pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length Murine Apaf-1 Length = 1256 | Back alignment and structure |
|
| >pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length Murine Apaf-1 Length = 1256 | Back alignment and structure |
|
| >pdb|4GGC|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site Degron Recognition By ApcC Length = 318 | Back alignment and structure |
|
| >pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs Protein Complex Length = 351 | Back alignment and structure |
|
| >pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2 In Complex With Galpha-q And Gbetagamma Subunits Length = 340 | Back alignment and structure |
|
| >pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1 Gamma_2 With Gdp Bound Length = 340 | Back alignment and structure |
|
| >pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma Length = 340 | Back alignment and structure |
|
| >pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And The Gt-Beta-Gamma Subunits Length = 340 | Back alignment and structure |
|
| >pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif Length = 604 | Back alignment and structure |
|
| >pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif Length = 604 | Back alignment and structure |
|
| >pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex Of The Copi Vesicular Coat Length = 814 | Back alignment and structure |
|
| >pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex Of The Copi Vesicular Coat Length = 814 | Back alignment and structure |
|
| >pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH Histone H4 Length = 414 | Back alignment and structure |
|
| >pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6 Length = 310 | Back alignment and structure |
|
| >pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6 Length = 310 | Back alignment and structure |
|
| >pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif Length = 304 | Back alignment and structure |
|
| >pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif Length = 304 | Back alignment and structure |
|
| >pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH Histone H4 Length = 414 | Back alignment and structure |
|
| >pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3 Length = 422 | Back alignment and structure |
|
| >pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide Length = 430 | Back alignment and structure |
|
| >pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55 Length = 432 | Back alignment and structure |
|
| >pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4 Length = 425 | Back alignment and structure |
|
| >pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana Length = 694 | Back alignment and structure |
|
| >pdb|3JRP|A Chain A, Sec13 With Nup145c (Aa109-179) Insertion Blade Length = 379 | Back alignment and structure |
|
| >pdb|2PM6|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE Copii Vesicular Coat, Native Version Length = 297 | Back alignment and structure |
|
| >pdb|2PM9|B Chain B, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE Copii Vesicular Coat Length = 297 | Back alignment and structure |
|
| >pdb|3JRO|A Chain A, Nup84-Nup145c-Sec13 Edge Element Of The Npc Lattice Length = 753 | Back alignment and structure |
|
| >pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN ALLOSTERIC Inhibitor Scf-I2 Length = 464 | Back alignment and structure |
|
| >pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN ALLOSTERIC Inhibitor Scf-I2 Length = 464 | Back alignment and structure |
|
| >pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group P21 Length = 319 | Back alignment and structure |
|
| >pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group P63 Length = 319 | Back alignment and structure |
|
| >pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a Cryo-em Map Of Yeast 80s Ribosome Length = 314 | Back alignment and structure |
|
| >pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae Translating 80s Ribosome Length = 319 | Back alignment and structure |
|
| >pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1. Length = 319 | Back alignment and structure |
|
| >pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex Length = 464 | Back alignment and structure |
|
| >pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex Length = 464 | Back alignment and structure |
|
| >pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces Lanuginosus Ribosome At 8.9a Resolution Length = 313 | Back alignment and structure |
|
| >pdb|1NR0|A Chain A, Two Seven-Bladed Beta-Propeller Domains Revealed By The Structure Of A C. Elegans Homologue Of Yeast Actin Interacting Protein 1 (Aip1). Length = 611 | Back alignment and structure |
|
| >pdb|4GQB|B Chain B, Crystal Structure Of The Human Prmt5:mep50 Complex Length = 344 | Back alignment and structure |
|
| >pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s Ribosome Length = 380 | Back alignment and structure |
|
| >pdb|3ZWL|B Chain B, Structure Of Eukaryotic Translation Initiation Factor Eif3i Complex With Eif3b C-Terminus (655-700) Length = 369 | Back alignment and structure |
|
| >pdb|2PM7|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE Copii Vesicular Coat, Selenomethionine Version Length = 297 | Back alignment and structure |
|
| >pdb|4A11|B Chain B, Structure Of The Hsddb1-Hscsa Complex Length = 408 | Back alignment and structure |
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 837 | |||
| 1got_B | 340 | GT-beta; complex (GTP-binding/transducer), G prote | 100.0 | |
| 1vyh_C | 410 | Platelet-activating factor acetylhydrolase IB alph | 100.0 | |
| 3ow8_A | 321 | WD repeat-containing protein 61; structural genomi | 100.0 | |
| 2pbi_B | 354 | Guanine nucleotide-binding protein subunit beta 5; | 100.0 | |
| 3iz6_a | 380 | 40S ribosomal protein RACK1 (RACK1); eukaryotic ri | 100.0 | |
| 2ynn_A | 304 | Coatomer subunit beta'; protein transport, peptide | 100.0 | |
| 3frx_A | 319 | Guanine nucleotide-binding protein subunit beta- l | 100.0 | |
| 1nr0_A | 611 | Actin interacting protein 1; beta propeller, WD40 | 100.0 | |
| 3fm0_A | 345 | Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r | 100.0 | |
| 1erj_A | 393 | Transcriptional repressor TUP1; beta-propeller, tr | 100.0 | |
| 1nr0_A | 611 | Actin interacting protein 1; beta propeller, WD40 | 100.0 | |
| 4ery_A | 312 | WD repeat-containing protein 5; WD40, WIN motif, b | 100.0 | |
| 2xzm_R | 343 | RACK1; ribosome, translation; 3.93A {Tetrahymena t | 100.0 | |
| 2ymu_A | 577 | WD-40 repeat protein; unknown function, two domain | 100.0 | |
| 4gqb_B | 344 | Methylosome protein 50; TIM barrel, beta-propeller | 100.0 | |
| 2hes_X | 330 | YDR267CP; beta-propeller, WD40 repeat, biosyntheti | 100.0 | |
| 4g56_B | 357 | MGC81050 protein; protein arginine methyltransfera | 100.0 | |
| 3zwl_B | 369 | Eukaryotic translation initiation factor 3 subuni; | 100.0 | |
| 3ow8_A | 321 | WD repeat-containing protein 61; structural genomi | 100.0 | |
| 2ymu_A | 577 | WD-40 repeat protein; unknown function, two domain | 100.0 | |
| 1gxr_A | 337 | ESG1, transducin-like enhancer protein 1; transcri | 100.0 | |
| 1vyh_C | 410 | Platelet-activating factor acetylhydrolase IB alph | 100.0 | |
| 4aow_A | 340 | Guanine nucleotide-binding protein subunit beta-2; | 100.0 | |
| 1r5m_A | 425 | SIR4-interacting protein SIF2; transcription corep | 100.0 | |
| 2pm9_A | 416 | Protein WEB1, protein transport protein SEC31; bet | 100.0 | |
| 1sq9_A | 397 | Antiviral protein SKI8; WD repeat, beta-transducin | 100.0 | |
| 2ynn_A | 304 | Coatomer subunit beta'; protein transport, peptide | 100.0 | |
| 4gqb_B | 344 | Methylosome protein 50; TIM barrel, beta-propeller | 100.0 | |
| 1k8k_C | 372 | P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta- | 100.0 | |
| 3dm0_A | 694 | Maltose-binding periplasmic protein fused with RAC | 100.0 | |
| 3vl1_A | 420 | 26S proteasome regulatory subunit RPN14; beta-prop | 100.0 | |
| 3odt_A | 313 | Protein DOA1; ubiquitin, nuclear protein; HET: MSE | 100.0 | |
| 3frx_A | 319 | Guanine nucleotide-binding protein subunit beta- l | 100.0 | |
| 1got_B | 340 | GT-beta; complex (GTP-binding/transducer), G prote | 100.0 | |
| 3k26_A | 366 | Polycomb protein EED; WD40, structural genomics, N | 100.0 | |
| 3ei3_B | 383 | DNA damage-binding protein 2; UV-damage, DDB, nucl | 100.0 | |
| 3i2n_A | 357 | WD repeat-containing protein 92; WD40 repeats, str | 100.0 | |
| 1r5m_A | 425 | SIR4-interacting protein SIF2; transcription corep | 100.0 | |
| 3dwl_C | 377 | Actin-related protein 2/3 complex subunit 1; prope | 100.0 | |
| 2xzm_R | 343 | RACK1; ribosome, translation; 3.93A {Tetrahymena t | 100.0 | |
| 4g56_B | 357 | MGC81050 protein; protein arginine methyltransfera | 100.0 | |
| 3gre_A | 437 | Serine/threonine-protein kinase VPS15; seven-blade | 100.0 | |
| 3fm0_A | 345 | Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r | 100.0 | |
| 2pbi_B | 354 | Guanine nucleotide-binding protein subunit beta 5; | 100.0 | |
| 3v7d_B | 464 | Cell division control protein 4; WD 40 domain, pho | 100.0 | |
| 2pm9_A | 416 | Protein WEB1, protein transport protein SEC31; bet | 100.0 | |
| 2j04_B | 524 | YDR362CP, TAU91; beta propeller, type 2 promoters, | 100.0 | |
| 4ery_A | 312 | WD repeat-containing protein 5; WD40, WIN motif, b | 100.0 | |
| 1gxr_A | 337 | ESG1, transducin-like enhancer protein 1; transcri | 100.0 | |
| 2oaj_A | 902 | Protein SNI1; WD40 repeat, beta propeller, endocyt | 100.0 | |
| 2ovr_B | 445 | FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 | 100.0 | |
| 1erj_A | 393 | Transcriptional repressor TUP1; beta-propeller, tr | 100.0 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 100.0 | |
| 3sfz_A | 1249 | APAF-1, apoptotic peptidase activating factor 1; a | 100.0 | |
| 3v7d_B | 464 | Cell division control protein 4; WD 40 domain, pho | 100.0 | |
| 1pgu_A | 615 | Actin interacting protein 1; WD repeat, seven-blad | 100.0 | |
| 4h5i_A | 365 | Guanine nucleotide-exchange factor SEC12; copii ve | 100.0 | |
| 4aow_A | 340 | Guanine nucleotide-binding protein subunit beta-2; | 100.0 | |
| 1pgu_A | 615 | Actin interacting protein 1; WD repeat, seven-blad | 100.0 | |
| 2hes_X | 330 | YDR267CP; beta-propeller, WD40 repeat, biosyntheti | 100.0 | |
| 3mmy_A | 368 | MRNA export factor; mRNA export, nuclear protein; | 100.0 | |
| 1yfq_A | 342 | Cell cycle arrest protein BUB3; WD repeat WD40 rep | 100.0 | |
| 4e54_B | 435 | DNA damage-binding protein 2; beta barrel, double | 100.0 | |
| 3iz6_a | 380 | 40S ribosomal protein RACK1 (RACK1); eukaryotic ri | 100.0 | |
| 2pm7_B | 297 | Protein transport protein SEC13, protein transport | 100.0 | |
| 3dw8_B | 447 | Serine/threonine-protein phosphatase 2A 55 kDa RE | 100.0 | |
| 3f3f_A | 351 | Nucleoporin SEH1; structural protein, protein comp | 100.0 | |
| 4aez_A | 401 | CDC20, WD repeat-containing protein SLP1; cell cyc | 100.0 | |
| 4a11_B | 408 | DNA excision repair protein ERCC-8; DNA binding pr | 100.0 | |
| 3vl1_A | 420 | 26S proteasome regulatory subunit RPN14; beta-prop | 100.0 | |
| 4gga_A | 420 | P55CDC, cell division cycle protein 20 homolog; ce | 100.0 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 100.0 | |
| 3sfz_A | 1249 | APAF-1, apoptotic peptidase activating factor 1; a | 100.0 | |
| 3dm0_A | 694 | Maltose-binding periplasmic protein fused with RAC | 100.0 | |
| 4ggc_A | 318 | P55CDC, cell division cycle protein 20 homolog; ce | 100.0 | |
| 1sq9_A | 397 | Antiviral protein SKI8; WD repeat, beta-transducin | 100.0 | |
| 1p22_A | 435 | F-BOX/WD-repeat protein 1A; ubiquitination, degrad | 100.0 | |
| 3zwl_B | 369 | Eukaryotic translation initiation factor 3 subuni; | 100.0 | |
| 3i2n_A | 357 | WD repeat-containing protein 92; WD40 repeats, str | 100.0 | |
| 1k8k_C | 372 | P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta- | 100.0 | |
| 2oaj_A | 902 | Protein SNI1; WD40 repeat, beta propeller, endocyt | 100.0 | |
| 2ovr_B | 445 | FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 | 100.0 | |
| 4aez_A | 401 | CDC20, WD repeat-containing protein SLP1; cell cyc | 100.0 | |
| 3bg1_A | 316 | Protein SEC13 homolog; NPC, transport, WD repeat, | 100.0 | |
| 2pm7_B | 297 | Protein transport protein SEC13, protein transport | 100.0 | |
| 3k26_A | 366 | Polycomb protein EED; WD40, structural genomics, N | 100.0 | |
| 4gga_A | 420 | P55CDC, cell division cycle protein 20 homolog; ce | 100.0 | |
| 3jrp_A | 379 | Fusion protein of protein transport protein SEC13 | 100.0 | |
| 3odt_A | 313 | Protein DOA1; ubiquitin, nuclear protein; HET: MSE | 100.0 | |
| 3ei3_B | 383 | DNA damage-binding protein 2; UV-damage, DDB, nucl | 100.0 | |
| 2aq5_A | 402 | Coronin-1A; WD40 repeat, 7-bladed beta-propeller, | 100.0 | |
| 3bg1_A | 316 | Protein SEC13 homolog; NPC, transport, WD repeat, | 100.0 | |
| 3bws_A | 433 | Protein LP49; two-domain, immunoglobulin-like, 7-b | 100.0 | |
| 3dwl_C | 377 | Actin-related protein 2/3 complex subunit 1; prope | 100.0 | |
| 4a11_B | 408 | DNA excision repair protein ERCC-8; DNA binding pr | 100.0 | |
| 4e54_B | 435 | DNA damage-binding protein 2; beta barrel, double | 100.0 | |
| 3jrp_A | 379 | Fusion protein of protein transport protein SEC13 | 99.98 | |
| 4ggc_A | 318 | P55CDC, cell division cycle protein 20 homolog; ce | 99.98 | |
| 1p22_A | 435 | F-BOX/WD-repeat protein 1A; ubiquitination, degrad | 99.97 | |
| 3vu4_A | 355 | KMHSV2; beta-propeller fold, protein transport; 2. | 99.97 | |
| 3gre_A | 437 | Serine/threonine-protein kinase VPS15; seven-blade | 99.97 | |
| 3dw8_B | 447 | Serine/threonine-protein phosphatase 2A 55 kDa RE | 99.97 | |
| 2vdu_B | 450 | TRNA (guanine-N(7)-)-methyltransferase- associated | 99.97 | |
| 2aq5_A | 402 | Coronin-1A; WD40 repeat, 7-bladed beta-propeller, | 99.97 | |
| 2xyi_A | 430 | Probable histone-binding protein CAF1; transcripti | 99.97 | |
| 3lrv_A | 343 | PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu | 99.97 | |
| 4h5i_A | 365 | Guanine nucleotide-exchange factor SEC12; copii ve | 99.97 | |
| 1l0q_A | 391 | Surface layer protein; SLP, S-layer, 7-bladed beta | 99.97 | |
| 1l0q_A | 391 | Surface layer protein; SLP, S-layer, 7-bladed beta | 99.97 | |
| 2j04_B | 524 | YDR362CP, TAU91; beta propeller, type 2 promoters, | 99.97 | |
| 1yfq_A | 342 | Cell cycle arrest protein BUB3; WD repeat WD40 rep | 99.97 | |
| 2j04_A | 588 | TAU60, YPL007P, hypothetical protein YPL007C; beta | 99.97 | |
| 2xyi_A | 430 | Probable histone-binding protein CAF1; transcripti | 99.97 | |
| 3jro_A | 753 | Fusion protein of protein transport protein SEC13 | 99.97 | |
| 3f3f_A | 351 | Nucleoporin SEH1; structural protein, protein comp | 99.97 | |
| 3mmy_A | 368 | MRNA export factor; mRNA export, nuclear protein; | 99.96 | |
| 2j04_A | 588 | TAU60, YPL007P, hypothetical protein YPL007C; beta | 99.96 | |
| 4gq1_A | 393 | NUP37; propeller, transport protein; 2.40A {Schizo | 99.96 | |
| 3jro_A | 753 | Fusion protein of protein transport protein SEC13 | 99.96 | |
| 2vdu_B | 450 | TRNA (guanine-N(7)-)-methyltransferase- associated | 99.96 | |
| 1nir_A | 543 | Nitrite reductase; hemoprotein, denitrification, d | 99.95 | |
| 3vu4_A | 355 | KMHSV2; beta-propeller fold, protein transport; 2. | 99.95 | |
| 3bws_A | 433 | Protein LP49; two-domain, immunoglobulin-like, 7-b | 99.95 | |
| 3lrv_A | 343 | PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu | 99.95 | |
| 2w18_A | 356 | PALB2, fancn, partner and localizer of BRCA2; fanc | 99.94 | |
| 2hqs_A | 415 | Protein TOLB; TOLB, PAL, TOL, transport protein-li | 99.94 | |
| 4gq1_A | 393 | NUP37; propeller, transport protein; 2.40A {Schizo | 99.93 | |
| 2hqs_A | 415 | Protein TOLB; TOLB, PAL, TOL, transport protein-li | 99.93 | |
| 3vgz_A | 353 | Uncharacterized protein YNCE; beta-propeller, prot | 99.93 | |
| 3u4y_A | 331 | Uncharacterized protein; structural genomics, PSI- | 99.93 | |
| 2w18_A | 356 | PALB2, fancn, partner and localizer of BRCA2; fanc | 99.92 | |
| 1ri6_A | 343 | Putative isomerase YBHE; 7-bladed propeller, enzym | 99.92 | |
| 1nir_A | 543 | Nitrite reductase; hemoprotein, denitrification, d | 99.92 | |
| 2ecf_A | 741 | Dipeptidyl peptidase IV; prolyl oligopeptidase fam | 99.92 | |
| 2ojh_A | 297 | Uncharacterized protein ATU1656/AGR_C_3050; TOLB, | 99.91 | |
| 2ecf_A | 741 | Dipeptidyl peptidase IV; prolyl oligopeptidase fam | 99.91 | |
| 1ri6_A | 343 | Putative isomerase YBHE; 7-bladed propeller, enzym | 99.91 | |
| 1pby_B | 337 | Quinohemoprotein amine dehydrogenase 40 kDa subuni | 99.91 | |
| 3u4y_A | 331 | Uncharacterized protein; structural genomics, PSI- | 99.91 | |
| 2ojh_A | 297 | Uncharacterized protein ATU1656/AGR_C_3050; TOLB, | 99.91 | |
| 3o4h_A | 582 | Acylamino-acid-releasing enzyme; alpha/beta hydrol | 99.9 | |
| 1xfd_A | 723 | DIP, dipeptidyl aminopeptidase-like protein 6, dip | 99.9 | |
| 2z3z_A | 706 | Dipeptidyl aminopeptidase IV; peptidase family S9, | 99.89 | |
| 1k32_A | 1045 | Tricorn protease; protein degradation, substrate g | 99.89 | |
| 1xfd_A | 723 | DIP, dipeptidyl aminopeptidase-like protein 6, dip | 99.88 | |
| 1k32_A | 1045 | Tricorn protease; protein degradation, substrate g | 99.88 | |
| 3hfq_A | 347 | Uncharacterized protein LP_2219; Q88V64_lacpl, NES | 99.88 | |
| 1pby_B | 337 | Quinohemoprotein amine dehydrogenase 40 kDa subuni | 99.88 | |
| 1jmx_B | 349 | Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; | 99.88 | |
| 3pe7_A | 388 | Oligogalacturonate lyase; seven-bladed beta-propel | 99.88 | |
| 3scy_A | 361 | Hypothetical bacterial 6-phosphogluconolactonase; | 99.87 | |
| 3hfq_A | 347 | Uncharacterized protein LP_2219; Q88V64_lacpl, NES | 99.87 | |
| 3vgz_A | 353 | Uncharacterized protein YNCE; beta-propeller, prot | 99.86 | |
| 2z3z_A | 706 | Dipeptidyl aminopeptidase IV; peptidase family S9, | 99.86 | |
| 3scy_A | 361 | Hypothetical bacterial 6-phosphogluconolactonase; | 99.85 | |
| 2oit_A | 434 | Nucleoporin 214KDA; NH2 terminal domain of NUP214/ | 99.85 | |
| 1z68_A | 719 | Fibroblast activation protein, alpha subunit; sepr | 99.84 | |
| 1jof_A | 365 | Carboxy-CIS,CIS-muconate cyclase; beta-propeller, | 99.84 | |
| 3c5m_A | 396 | Oligogalacturonate lyase; blade-shaped beta-propel | 99.82 | |
| 1jmx_B | 349 | Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; | 99.82 | |
| 1z68_A | 719 | Fibroblast activation protein, alpha subunit; sepr | 99.82 | |
| 1jof_A | 365 | Carboxy-CIS,CIS-muconate cyclase; beta-propeller, | 99.81 | |
| 3o4h_A | 582 | Acylamino-acid-releasing enzyme; alpha/beta hydrol | 99.8 | |
| 4a5s_A | 740 | Dipeptidyl peptidase 4 soluble form; hydrolase, ty | 99.79 | |
| 2oit_A | 434 | Nucleoporin 214KDA; NH2 terminal domain of NUP214/ | 99.78 | |
| 3azo_A | 662 | Aminopeptidase; POP family, hydrolase; 2.00A {Stre | 99.77 | |
| 2oiz_A | 361 | Aromatic amine dehydrogenase, large subunit; oxido | 99.76 | |
| 4a5s_A | 740 | Dipeptidyl peptidase 4 soluble form; hydrolase, ty | 99.76 | |
| 2oiz_A | 361 | Aromatic amine dehydrogenase, large subunit; oxido | 99.76 | |
| 2gop_A | 347 | Trilobed protease; beta propeller, open velcro, hy | 99.75 | |
| 3fvz_A | 329 | Peptidyl-glycine alpha-amidating monooxygenase; be | 99.74 | |
| 2dg1_A | 333 | DRP35, lactonase; beta propeller, hydrolase; 1.72A | 99.73 | |
| 1qks_A | 567 | Cytochrome CD1 nitrite reductase; enzyme, oxidored | 99.73 | |
| 1q7f_A | 286 | NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL | 99.72 | |
| 3pe7_A | 388 | Oligogalacturonate lyase; seven-bladed beta-propel | 99.72 | |
| 1q7f_A | 286 | NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL | 99.72 | |
| 2z2n_A | 299 | Virginiamycin B lyase; seven-bladed beta-propeller | 99.71 | |
| 3azo_A | 662 | Aminopeptidase; POP family, hydrolase; 2.00A {Stre | 99.7 | |
| 3fvz_A | 329 | Peptidyl-glycine alpha-amidating monooxygenase; be | 99.69 | |
| 2dg1_A | 333 | DRP35, lactonase; beta propeller, hydrolase; 1.72A | 99.69 | |
| 3e5z_A | 296 | Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco | 99.68 | |
| 2xdw_A | 710 | Prolyl endopeptidase; alpha/beta-hydrolase, amnesi | 99.68 | |
| 3dsm_A | 328 | Uncharacterized protein bacuni_02894; seven_blated | 99.67 | |
| 2gop_A | 347 | Trilobed protease; beta propeller, open velcro, hy | 99.66 | |
| 1qks_A | 567 | Cytochrome CD1 nitrite reductase; enzyme, oxidored | 99.65 | |
| 3e5z_A | 296 | Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco | 99.65 | |
| 2qc5_A | 300 | Streptogramin B lactonase; beta propeller, lyase; | 99.64 | |
| 3dsm_A | 328 | Uncharacterized protein bacuni_02894; seven_blated | 99.63 | |
| 2bkl_A | 695 | Prolyl endopeptidase; mechanistic study, celiac sp | 99.63 | |
| 3c5m_A | 396 | Oligogalacturonate lyase; blade-shaped beta-propel | 99.63 | |
| 3sjl_D | 386 | Methylamine dehydrogenase heavy chain; MAUG, C-hem | 99.61 | |
| 1rwi_B | 270 | Serine/threonine-protein kinase PKND; beta propell | 99.61 | |
| 2mad_H | 373 | Methylamine dehydrogenase (heavy subunit); oxidore | 99.6 | |
| 2xdw_A | 710 | Prolyl endopeptidase; alpha/beta-hydrolase, amnesi | 99.6 | |
| 1rwi_B | 270 | Serine/threonine-protein kinase PKND; beta propell | 99.59 | |
| 1pjx_A | 314 | Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries | 99.57 | |
| 3no2_A | 276 | Uncharacterized protein; six-bladed beta-propeller | 99.56 | |
| 2bkl_A | 695 | Prolyl endopeptidase; mechanistic study, celiac sp | 99.55 | |
| 2z2n_A | 299 | Virginiamycin B lyase; seven-bladed beta-propeller | 99.55 | |
| 1yr2_A | 741 | Prolyl oligopeptidase; prolyl endopeptidase, mecha | 99.54 | |
| 2mad_H | 373 | Methylamine dehydrogenase (heavy subunit); oxidore | 99.54 | |
| 1pjx_A | 314 | Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries | 99.52 | |
| 3c75_H | 426 | MADH, methylamine dehydrogenase heavy chain; coppe | 99.51 | |
| 1yr2_A | 741 | Prolyl oligopeptidase; prolyl endopeptidase, mecha | 99.48 | |
| 3sjl_D | 386 | Methylamine dehydrogenase heavy chain; MAUG, C-hem | 99.47 | |
| 3no2_A | 276 | Uncharacterized protein; six-bladed beta-propeller | 99.47 | |
| 2qc5_A | 300 | Streptogramin B lactonase; beta propeller, lyase; | 99.46 | |
| 3iuj_A | 693 | Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas | 99.44 | |
| 3g4e_A | 297 | Regucalcin; six bladed beta-propeller, gluconolcat | 99.44 | |
| 3hrp_A | 409 | Uncharacterized protein; NP_812590.1, structural g | 99.44 | |
| 3g4e_A | 297 | Regucalcin; six bladed beta-propeller, gluconolcat | 99.44 | |
| 3hrp_A | 409 | Uncharacterized protein; NP_812590.1, structural g | 99.42 | |
| 2qe8_A | 343 | Uncharacterized protein; structural genomics, join | 99.42 | |
| 2ghs_A | 326 | AGR_C_1268P; regucalcin, structural genomics, join | 99.41 | |
| 3c75_H | 426 | MADH, methylamine dehydrogenase heavy chain; coppe | 99.38 | |
| 3dr2_A | 305 | Exported gluconolactonase; gluconolactonase SMP-30 | 99.37 | |
| 3dr2_A | 305 | Exported gluconolactonase; gluconolactonase SMP-30 | 99.37 | |
| 2ghs_A | 326 | AGR_C_1268P; regucalcin, structural genomics, join | 99.36 | |
| 1xip_A | 388 | Nucleoporin NUP159; beta-propeller, transport prot | 99.34 | |
| 1mda_H | 368 | Methylamine dehydrogenase (heavy subunit); electro | 99.32 | |
| 3q7m_A | 376 | Lipoprotein YFGL, BAMB; beta-propeller, BAM comple | 99.31 | |
| 2hz6_A | 369 | Endoplasmic reticulum to nucleus signalling 1 isof | 99.26 | |
| 1yiq_A | 689 | Quinohemoprotein alcohol dehydrogenase; electron t | 99.25 | |
| 1kb0_A | 677 | Quinohemoprotein alcohol dehydrogenase; beta-prope | 99.24 | |
| 3hxj_A | 330 | Pyrrolo-quinoline quinone; all beta protein. incom | 99.24 | |
| 1mda_H | 368 | Methylamine dehydrogenase (heavy subunit); electro | 99.24 | |
| 3q7m_A | 376 | Lipoprotein YFGL, BAMB; beta-propeller, BAM comple | 99.22 | |
| 3iuj_A | 693 | Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas | 99.22 | |
| 1yiq_A | 689 | Quinohemoprotein alcohol dehydrogenase; electron t | 99.21 | |
| 1kb0_A | 677 | Quinohemoprotein alcohol dehydrogenase; beta-prope | 99.21 | |
| 1npe_A | 267 | Nidogen, entactin; glycoprotein, basement membrane | 99.19 | |
| 2ece_A | 462 | 462AA long hypothetical selenium-binding protein; | 99.16 | |
| 1xip_A | 388 | Nucleoporin NUP159; beta-propeller, transport prot | 99.15 | |
| 1fwx_A | 595 | Nitrous oxide reductase; beta-propeller domain, cu | 99.09 | |
| 3hxj_A | 330 | Pyrrolo-quinoline quinone; all beta protein. incom | 99.09 | |
| 2ece_A | 462 | 462AA long hypothetical selenium-binding protein; | 99.07 | |
| 2qe8_A | 343 | Uncharacterized protein; structural genomics, join | 99.07 | |
| 1kv9_A | 668 | Type II quinohemoprotein alcohol dehydrogenase; el | 99.04 | |
| 1fwx_A | 595 | Nitrous oxide reductase; beta-propeller domain, cu | 99.03 | |
| 1npe_A | 267 | Nidogen, entactin; glycoprotein, basement membrane | 99.01 | |
| 2iwa_A | 266 | Glutamine cyclotransferase; pyroglutamate, acyltra | 98.97 | |
| 2hz6_A | 369 | Endoplasmic reticulum to nucleus signalling 1 isof | 98.97 | |
| 2ad6_A | 571 | Methanol dehydrogenase subunit 1; PQQ configuratio | 98.95 | |
| 4a2l_A | 795 | BT_4663, two-component system sensor histidine kin | 98.93 | |
| 4a2l_A | 795 | BT_4663, two-component system sensor histidine kin | 98.91 | |
| 2fp8_A | 322 | Strictosidine synthase; six bladed beta propeller | 98.89 | |
| 1w6s_A | 599 | Methanol dehydrogenase subunit 1; anisotropic, ele | 98.89 | |
| 2p4o_A | 306 | Hypothetical protein; putative lactonase, structur | 98.85 | |
| 2fp8_A | 322 | Strictosidine synthase; six bladed beta propeller | 98.84 | |
| 3v9f_A | 781 | Two-component system sensor histidine kinase/RESP | 98.82 | |
| 2iwa_A | 266 | Glutamine cyclotransferase; pyroglutamate, acyltra | 98.8 | |
| 1kv9_A | 668 | Type II quinohemoprotein alcohol dehydrogenase; el | 98.79 | |
| 3nol_A | 262 | Glutamine cyclotransferase; beta-propeller, glutam | 98.78 | |
| 2p4o_A | 306 | Hypothetical protein; putative lactonase, structur | 98.75 | |
| 1ijq_A | 316 | LDL receptor, low-density lipoprotein receptor; be | 98.75 | |
| 1k3i_A | 656 | Galactose oxidase precursor; blade beta propeller, | 98.74 | |
| 2ad6_A | 571 | Methanol dehydrogenase subunit 1; PQQ configuratio | 98.73 | |
| 3v64_C | 349 | Agrin; beta propeller, laminin-G, signaling, prote | 98.73 | |
| 3nol_A | 262 | Glutamine cyclotransferase; beta-propeller, glutam | 98.72 | |
| 1flg_A | 582 | Protein (quinoprotein ethanol dehydrogenase); supe | 98.72 | |
| 3v9f_A | 781 | Two-component system sensor histidine kinase/RESP | 98.69 | |
| 3nok_A | 268 | Glutaminyl cyclase; beta-propeller, cyclotransfera | 98.69 | |
| 3v65_B | 386 | Low-density lipoprotein receptor-related protein; | 98.64 | |
| 3mbr_X | 243 | Glutamine cyclotransferase; beta-propeller; 1.44A | 98.64 | |
| 3mbr_X | 243 | Glutamine cyclotransferase; beta-propeller; 1.44A | 98.64 | |
| 1w6s_A | 599 | Methanol dehydrogenase subunit 1; anisotropic, ele | 98.63 | |
| 3nok_A | 268 | Glutaminyl cyclase; beta-propeller, cyclotransfera | 98.61 | |
| 3tc9_A | 430 | Hypothetical hydrolase; 6-bladed beta-propeller, i | 98.59 | |
| 1flg_A | 582 | Protein (quinoprotein ethanol dehydrogenase); supe | 98.59 | |
| 2xbg_A | 327 | YCF48-like protein; photosynthesis, photosystem II | 98.58 | |
| 3sov_A | 318 | LRP-6, low-density lipoprotein receptor-related pr | 98.54 | |
| 3v64_C | 349 | Agrin; beta propeller, laminin-G, signaling, prote | 98.54 | |
| 1ijq_A | 316 | LDL receptor, low-density lipoprotein receptor; be | 98.53 | |
| 3p5b_L | 400 | Low density lipoprotein receptor variant; B-propel | 98.53 | |
| 2xe4_A | 751 | Oligopeptidase B; hydrolase-inhibitor complex, hyd | 98.5 | |
| 3qqz_A | 255 | Putative uncharacterized protein YJIK; MCSG, PSI-2 | 98.49 | |
| 3v65_B | 386 | Low-density lipoprotein receptor-related protein; | 98.48 | |
| 3tc9_A | 430 | Hypothetical hydrolase; 6-bladed beta-propeller, i | 98.43 | |
| 3amr_A | 355 | 3-phytase; beta-propeller, phytate, MYO-inositol h | 98.42 | |
| 4hw6_A | 433 | Hypothetical protein, IPT/TIG domain protein; puta | 98.41 | |
| 2xe4_A | 751 | Oligopeptidase B; hydrolase-inhibitor complex, hyd | 98.39 | |
| 3p5b_L | 400 | Low density lipoprotein receptor variant; B-propel | 98.38 | |
| 3sov_A | 318 | LRP-6, low-density lipoprotein receptor-related pr | 98.38 | |
| 3qqz_A | 255 | Putative uncharacterized protein YJIK; MCSG, PSI-2 | 98.37 | |
| 3m0c_C | 791 | LDL receptor, low-density lipoprotein receptor; pr | 98.36 | |
| 4hw6_A | 433 | Hypothetical protein, IPT/TIG domain protein; puta | 98.28 | |
| 3kya_A | 496 | Putative phosphatase; structural genomics, joint c | 98.21 | |
| 1k3i_A | 656 | Galactose oxidase precursor; blade beta propeller, | 98.19 | |
| 3m0c_C | 791 | LDL receptor, low-density lipoprotein receptor; pr | 98.13 | |
| 4a0p_A | 628 | LRP6, LRP-6, low-density lipoprotein receptor-rela | 98.1 | |
| 3kya_A | 496 | Putative phosphatase; structural genomics, joint c | 98.09 | |
| 2ism_A | 352 | Putative oxidoreductase; BL41XU spring-8, bladed b | 98.08 | |
| 3s94_A | 619 | LRP-6, low-density lipoprotein receptor-related pr | 98.05 | |
| 4a0p_A | 628 | LRP6, LRP-6, low-density lipoprotein receptor-rela | 98.02 | |
| 3s94_A | 619 | LRP-6, low-density lipoprotein receptor-related pr | 98.02 | |
| 3a9g_A | 354 | Putative uncharacterized protein; PQQ dependent de | 98.01 | |
| 1n7d_A | 699 | LDL receptor, low-density lipoprotein receptor; fa | 97.98 | |
| 2xbg_A | 327 | YCF48-like protein; photosynthesis, photosystem II | 97.97 | |
| 2p9w_A | 334 | MAL S 1 allergenic protein; beta propeller; 1.35A | 97.94 | |
| 2xzh_A | 365 | Clathrin heavy chain 1; endocytosis, endocytosis i | 97.91 | |
| 3ott_A | 758 | Two-component system sensor histidine kinase; beta | 97.9 | |
| 3amr_A | 355 | 3-phytase; beta-propeller, phytate, MYO-inositol h | 97.88 | |
| 3ei3_A | 1158 | DNA damage-binding protein 1; UV-damage, DDB, nucl | 97.88 | |
| 2xzh_A | 365 | Clathrin heavy chain 1; endocytosis, endocytosis i | 97.85 | |
| 3sre_A | 355 | PON1, serum paraoxonase; directed evolution, 6-bla | 97.85 | |
| 2p9w_A | 334 | MAL S 1 allergenic protein; beta propeller; 1.35A | 97.83 | |
| 2ism_A | 352 | Putative oxidoreductase; BL41XU spring-8, bladed b | 97.82 | |
| 3ott_A | 758 | Two-component system sensor histidine kinase; beta | 97.82 | |
| 2vpj_A | 301 | Kelch-like protein 12; adaptor protein, WNT signal | 97.8 | |
| 3a9g_A | 354 | Putative uncharacterized protein; PQQ dependent de | 97.78 | |
| 2g8s_A | 353 | Glucose/sorbosone dehydrogenases; bladed beta-prop | 97.76 | |
| 1bpo_A | 494 | Protein (clathrin); clathrin endocytosis beta-prop | 97.72 | |
| 2g8s_A | 353 | Glucose/sorbosone dehydrogenases; bladed beta-prop | 97.7 | |
| 1bpo_A | 494 | Protein (clathrin); clathrin endocytosis beta-prop | 97.7 | |
| 3das_A | 347 | Putative oxidoreductase; aldose sugar dehydrogenas | 97.68 | |
| 3ei3_A | 1158 | DNA damage-binding protein 1; UV-damage, DDB, nucl | 97.65 | |
| 3ii7_A | 306 | Kelch-like protein 7; protein-binding, kelch-repea | 97.61 | |
| 1n7d_A | 699 | LDL receptor, low-density lipoprotein receptor; fa | 97.61 | |
| 2xn4_A | 302 | Kelch-like protein 2; structural protein, cytoskel | 97.53 | |
| 3das_A | 347 | Putative oxidoreductase; aldose sugar dehydrogenas | 97.49 | |
| 3sre_A | 355 | PON1, serum paraoxonase; directed evolution, 6-bla | 97.46 | |
| 3sbq_A | 638 | Nitrous-oxide reductase; beta-propeller, cupredoxi | 97.35 | |
| 2vpj_A | 301 | Kelch-like protein 12; adaptor protein, WNT signal | 97.31 | |
| 1zgk_A | 308 | Kelch-like ECH-associated protein 1; beta-propelle | 97.29 | |
| 4asc_A | 315 | Kelch repeat and BTB domain-containing protein 5; | 97.29 | |
| 2xn4_A | 302 | Kelch-like protein 2; structural protein, cytoskel | 97.24 | |
| 3ii7_A | 306 | Kelch-like protein 7; protein-binding, kelch-repea | 97.23 | |
| 4b8c_D | 727 | Glucose-repressible alcohol dehydrogenase transcr | 97.17 | |
| 1cru_A | 454 | Protein (soluble quinoprotein glucose dehydrogena; | 97.14 | |
| 3s25_A | 302 | Hypothetical 7-bladed beta-propeller-like protein; | 97.13 | |
| 4b8c_D | 727 | Glucose-repressible alcohol dehydrogenase transcr | 97.09 | |
| 2woz_A | 318 | Kelch repeat and BTB domain-containing protein 10; | 97.03 | |
| 2uvk_A | 357 | YJHT; unknown function, hypothetical protein, sial | 97.0 | |
| 3s25_A | 302 | Hypothetical 7-bladed beta-propeller-like protein; | 96.99 | |
| 1cru_A | 454 | Protein (soluble quinoprotein glucose dehydrogena; | 96.88 | |
| 3pbp_A | 452 | Nucleoporin NUP82; beta-propeller, mRNA export, mR | 96.85 | |
| 4asc_A | 315 | Kelch repeat and BTB domain-containing protein 5; | 96.85 | |
| 2be1_A | 339 | Serine/threonine-protein kinase/endoribonuclease; | 96.77 | |
| 2be1_A | 339 | Serine/threonine-protein kinase/endoribonuclease; | 96.76 | |
| 2woz_A | 318 | Kelch repeat and BTB domain-containing protein 10; | 96.61 | |
| 1zgk_A | 308 | Kelch-like ECH-associated protein 1; beta-propelle | 96.56 | |
| 3iot_A | 449 | Maltose-binding protein, huntingtin fusion protei; | 96.54 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 96.43 | |
| 2uvk_A | 357 | YJHT; unknown function, hypothetical protein, sial | 96.37 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 96.3 | |
| 3pbp_A | 452 | Nucleoporin NUP82; beta-propeller, mRNA export, mR | 96.2 | |
| 3b7f_A | 394 | Glycosyl hydrolase, BNR repeat; 7-bladed beta-prop | 96.15 | |
| 1tl2_A | 236 | L10, protein (tachylectin-2); animal lectin, horse | 96.08 | |
| 2zwa_A | 695 | Leucine carboxyl methyltransferase 2; HET: SAH CIT | 96.02 | |
| 1tl2_A | 236 | L10, protein (tachylectin-2); animal lectin, horse | 96.01 | |
| 2wg3_C | 463 | Hedgehog-interacting protein; lipoprotein, develop | 95.55 | |
| 4hvt_A | 711 | Ritya.17583.B, post-proline cleaving enzyme; ssgci | 95.34 | |
| 3b7f_A | 394 | Glycosyl hydrolase, BNR repeat; 7-bladed beta-prop | 95.27 | |
| 3uc1_A | 327 | DNA gyrase subunit A; DNA binding protein, topoiso | 95.19 | |
| 2wg3_C | 463 | Hedgehog-interacting protein; lipoprotein, develop | 95.14 | |
| 3iot_A | 449 | Maltose-binding protein, huntingtin fusion protei; | 94.47 | |
| 2zwa_A | 695 | Leucine carboxyl methyltransferase 2; HET: SAH CIT | 94.34 | |
| 3q6k_A | 381 | 43.2 kDa salivary protein; beta propeller, binding | 94.13 | |
| 3qhy_B | 282 | Beta-lactamase inhibitory protein II; enyzme-inhib | 93.93 | |
| 1suu_A | 312 | DNA gyrase subunit A; topoisomerase,DNA gyrase, be | 93.88 | |
| 1wp5_A | 323 | Topoisomerase IV; broken beta-propeller, hairpin-i | 93.87 | |
| 3kci_A | 389 | Probable E3 ubiquitin-protein ligase HERC2; WD40, | 93.81 | |
| 3qhy_B | 282 | Beta-lactamase inhibitory protein II; enyzme-inhib | 93.51 | |
| 4hvt_A | 711 | Ritya.17583.B, post-proline cleaving enzyme; ssgci | 92.62 | |
| 1zi0_A | 307 | DNA gyrase subunit A; beta pinwheel, topoisomerase | 92.57 | |
| 3l6v_A | 370 | GYRA, DNA gyrase subunit A; gyrase A C-terminal do | 92.49 | |
| 3no0_A | 276 | DNA gyrase subunit A; DNA topology, topoisomerase, | 92.49 | |
| 3sbq_A | 638 | Nitrous-oxide reductase; beta-propeller, cupredoxi | 92.46 | |
| 1sqj_A | 789 | OXG-RCBH, oligoxyloglucan reducing-END-specific ce | 92.11 | |
| 3l6v_A | 370 | GYRA, DNA gyrase subunit A; gyrase A C-terminal do | 90.97 | |
| 3uc1_A | 327 | DNA gyrase subunit A; DNA binding protein, topoiso | 90.71 | |
| 1zi0_A | 307 | DNA gyrase subunit A; beta pinwheel, topoisomerase | 90.32 | |
| 3mvd_K | 423 | Regulator of chromosome condensation; protein-DNA | 90.31 | |
| 1suu_A | 312 | DNA gyrase subunit A; topoisomerase,DNA gyrase, be | 90.12 | |
| 1sqj_A | 789 | OXG-RCBH, oligoxyloglucan reducing-END-specific ce | 89.58 | |
| 3kci_A | 389 | Probable E3 ubiquitin-protein ligase HERC2; WD40, | 87.71 | |
| 3no0_A | 276 | DNA gyrase subunit A; DNA topology, topoisomerase, | 87.55 | |
| 1wp5_A | 323 | Topoisomerase IV; broken beta-propeller, hairpin-i | 85.15 | |
| 2cn3_A | 737 | Xyloglucanase, beta-1,4-xyloglucan hydrolase; glyc | 84.03 | |
| 4d9s_A | 406 | UVB-resistance protein UVR8; UV resistance, UV-B p | 83.58 | |
| 1uuj_A | 88 | Platelet-activating factor acetylhydrolase IB ALP | 83.03 | |
| 2xtc_A | 90 | F-box-like/WD repeat-containing protein TBL1X; tra | 82.56 |
| >1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-41 Score=373.66 Aligned_cols=289 Identities=19% Similarity=0.366 Sum_probs=264.3
Q ss_pred eeeEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEE
Q 003236 544 TFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRV 623 (837)
Q Consensus 544 ~~~~~~~l~~H~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~I 623 (837)
.+.....+.+|.+.|++++|+||+++|++|+.||+|+|||+.+++.+..+..|...|.+++|+|++++|++++.|+.|++
T Consensus 44 ~~~~~~~l~gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~i 123 (340)
T 1got_B 44 QMRTRRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSI 123 (340)
T ss_dssp CCCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECSSSCEEEEEECTTSSEEEEEETTCEEEE
T ss_pred cchhheeecCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCCcceEeecCCccEEEEEECCCCCEEEEEeCCCeEEE
Confidence 34567889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEcCCCC---ceeEEeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeeEEec-CCCeeEEEEecCCCEEEE
Q 003236 624 WDTENPD---YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILA 699 (837)
Q Consensus 624 WDl~~~~---~~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~-~~~i~sl~~sp~g~~lla 699 (837)
||+.+.. .....+.+|...|.++.|++++. +++++.|+.|++||+++++++..+.. ...|.+++|+|++.++++
T Consensus 124 w~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~--l~s~s~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s 201 (340)
T 1got_B 124 YNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQ--IVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVS 201 (340)
T ss_dssp EETTTCSBSCEEEEEEECCSSCEEEEEEEETTE--EEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEE
T ss_pred EECccCCCcceeEEEecCCCccEEEEEECCCCc--EEEEECCCcEEEEECCCCcEEEEEcCCCCceEEEEECCCCCEEEE
Confidence 9998754 24567789999999999998753 66889999999999999999888874 567999999999999999
Q ss_pred EEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeec--CCCceEEEEE
Q 003236 700 AAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSC--TGNKFHSCVF 776 (837)
Q Consensus 700 gs~dg~I~iwDl~s~~~~~~l~~h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~--~~~~I~sv~f 776 (837)
++.|+.|++||++++.++..+.+|...|++++|+|++.+|++++ |+.|+|||++++ ..+..+.. +...|.+++|
T Consensus 202 g~~d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~---~~~~~~~~~~~~~~v~~~~~ 278 (340)
T 1got_B 202 GACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRAD---QELMTYSHDNIICGITSVSF 278 (340)
T ss_dssp EETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTT---EEEEEECCTTCCSCEEEEEE
T ss_pred EeCCCcEEEEECCCCeeEEEEcCCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCC---cEEEEEccCCcccceEEEEE
Confidence 99999999999999999999999999999999999999999999 999999999887 45554442 2347999999
Q ss_pred eCCCCEEEEEEcCCeEEEEECCCCcEE-EeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 003236 777 HPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 837 (837)
Q Consensus 777 spdg~~L~sgs~dg~I~IwDl~s~~~~-~l~~h~~~V~sla~spdg~~LaSgs~DG~I~IWd 837 (837)
+|++.+|++++.|+.|++||+.+++.+ .+.+|...|.+++|+|++.+|++|+.||.|+|||
T Consensus 279 s~~g~~l~~g~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~i~iWd 340 (340)
T 1got_B 279 SKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp CTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred CCCCCEEEEECCCCeEEEEEcccCcEeeEeecCCCcEEEEEEcCCCCEEEEEcCCccEEecC
Confidence 999999999999999999999988877 7789999999999999999999999999999997
|
| >1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=4.7e-42 Score=388.34 Aligned_cols=284 Identities=26% Similarity=0.486 Sum_probs=266.8
Q ss_pred EEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCC
Q 003236 549 QLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTEN 628 (837)
Q Consensus 549 ~~l~~H~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~ 628 (837)
..+.+|.++|++++|+|++.+|++|+.||+|+|||+.+++....+.+|.+.|.+++|+|++++|++|+.|++|+|||+.+
T Consensus 102 ~~l~gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~ 181 (410)
T 1vyh_C 102 YALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQG 181 (410)
T ss_dssp CEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTS
T ss_pred EeecccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEEeccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCC
Confidence 45679999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred CCceeEEeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeeEEec-CCCeeEEEEecCCCEEEEEEcCCeEE
Q 003236 629 PDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAIENYIS 707 (837)
Q Consensus 629 ~~~~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~-~~~i~sl~~sp~g~~llags~dg~I~ 707 (837)
.. ++..+.+|...|.+++|+|++. ++++|+.|++|++||++++.++..+.. ...+.++.+++++..+++++.|+.|+
T Consensus 182 ~~-~~~~~~~h~~~V~~v~~~p~~~-~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~s~D~~v~ 259 (410)
T 1vyh_C 182 FE-CIRTMHGHDHNVSSVSIMPNGD-HIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVR 259 (410)
T ss_dssp SC-EEECCCCCSSCEEEEEECSSSS-EEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEE
T ss_pred Cc-eeEEEcCCCCCEEEEEEeCCCC-EEEEEeCCCeEEEEECCCCcEEEEEeCCCccEEEEEECCCCCEEEEEcCCCeEE
Confidence 55 5788899999999999999976 566999999999999999999988875 45699999999999999999999999
Q ss_pred EEECCCCeEEEEEcCCCCCEEEEEEcCC--------------------CCEEEEEe-CCeEEEEEcCCCCCceeEEEeec
Q 003236 708 ILDVETQVCRLKLQGHKNQVHSVCWNTS--------------------GEYLASVS-DELVRVWSIGSGSKGECIHELSC 766 (837)
Q Consensus 708 iwDl~s~~~~~~l~~h~~~V~sl~~spd--------------------g~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~ 766 (837)
+||++++.+...+.+|...|.+++|+|+ +.+|++++ |+.|++||++++ .++..+.+
T Consensus 260 vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~---~~~~~~~~ 336 (410)
T 1vyh_C 260 VWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTG---MCLMTLVG 336 (410)
T ss_dssp EEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTT---EEEEEEEC
T ss_pred EEECCCCceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCC---ceEEEEEC
Confidence 9999999999999999999999999996 67899998 999999999987 78889999
Q ss_pred CCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE-EeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 003236 767 TGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 837 (837)
Q Consensus 767 ~~~~I~sv~fspdg~~L~sgs~dg~I~IwDl~s~~~~-~l~~h~~~V~sla~spdg~~LaSgs~DG~I~IWd 837 (837)
|...|.+++|+|++.+|++++.|+.|++||+.+++.+ .+.+|...|++++|+|++.+|++|+.||+|+|||
T Consensus 337 h~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sgs~D~~i~vW~ 408 (410)
T 1vyh_C 337 HDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE 408 (410)
T ss_dssp CSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEECCSSCEEEEEECSSSSCEEEEETTSEEEEEC
T ss_pred CCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEcCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEe
Confidence 9999999999999999999999999999999988866 7789999999999999999999999999999997
|
| >3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.8e-41 Score=366.34 Aligned_cols=285 Identities=18% Similarity=0.328 Sum_probs=261.3
Q ss_pred EEEecCCCCCeEEEEEcCC----CCEEEEEECCCcEEEEeCCCCeE--EEEeccCCCCeEEEEEcCCCCEEEEEeCCCeE
Q 003236 548 FQLIPASTSKVESCHFSPD----GKLLATGGHDKKAVLWCTESFTV--KSTLEEHTQWITDVRFSPSLSRLATSSADRTV 621 (837)
Q Consensus 548 ~~~l~~H~~~V~sl~fSpd----g~~Lasgs~Dg~I~VWd~~t~~~--~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I 621 (837)
+..+.+|.+.|++|+|+++ +.+||+|+.|++|+||++.+.+. ...+.+|...|.+++|++++.++++++.|++|
T Consensus 25 ~~~~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~~~~~~l~s~s~D~~i 104 (321)
T 3ow8_A 25 FKQEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAHI 104 (321)
T ss_dssp EEETTSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECSSSSEEEEEETTSEE
T ss_pred eeecccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCeeeeeeeccCCCCEEEEEECCCCCEEEEEeCCCcE
Confidence 4667899999999999984 67999999999999999887654 45688999999999999999999999999999
Q ss_pred EEEEcCCCCceeEEeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeeEEec-CCCeeEEEEecCCCEEEEE
Q 003236 622 RVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAA 700 (837)
Q Consensus 622 ~IWDl~~~~~~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~-~~~i~sl~~sp~g~~llag 700 (837)
++||+.+++ .+..+..|...+.+++|+|++. +|++++.|+.|++||+++++....+.. ...+.+++|+|++++|+++
T Consensus 105 ~lWd~~~~~-~~~~~~~~~~~~~~~~~spdg~-~l~~g~~dg~v~i~~~~~~~~~~~~~~~~~~v~~~~~spdg~~lasg 182 (321)
T 3ow8_A 105 RLWDLENGK-QIKSIDAGPVDAWTLAFSPDSQ-YLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASG 182 (321)
T ss_dssp EEEETTTTE-EEEEEECCTTCCCCEEECTTSS-EEEEECTTSEEEEEETTTCSEEEEEECSSSCEEEEEECTTSSEEEEE
T ss_pred EEEECCCCC-EEEEEeCCCccEEEEEECCCCC-EEEEEcCCCcEEEEEcCCCceeEEecCCCceEEEEEECCCCCEEEEE
Confidence 999999865 4777888899999999999977 666899999999999999988877765 4569999999999999999
Q ss_pred EcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCC
Q 003236 701 AIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPT 779 (837)
Q Consensus 701 s~dg~I~iwDl~s~~~~~~l~~h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fspd 779 (837)
+.|+.|++||+++++.+..+.+|...|.+++|+|++.+|++++ |+.|+|||++++ ..+..+..|...|.+++|+|+
T Consensus 183 ~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~---~~~~~~~~h~~~v~~~~~sp~ 259 (321)
T 3ow8_A 183 AIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHA---NLAGTLSGHASWVLNVAFCPD 259 (321)
T ss_dssp ETTSCEEEEETTTTEEEEEECCCSSCCCEEEECTTSCEEEEECTTSCEEEEETTTC---CEEEEECCCSSCEEEEEECTT
T ss_pred cCCCeEEEEECCCCcEEEEEcccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCc---ceeEEEcCCCCceEEEEECCC
Confidence 9999999999999999999999999999999999999999999 999999999887 677888999999999999999
Q ss_pred CCEEEEEEcCCeEEEEECCCCcEE-EeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 003236 780 FPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 837 (837)
Q Consensus 780 g~~L~sgs~dg~I~IwDl~s~~~~-~l~~h~~~V~sla~spdg~~LaSgs~DG~I~IWd 837 (837)
+.+|++++.|+.|+|||+.+++++ .+.+|...|.+++|+|++.+|++++.||.|+|||
T Consensus 260 ~~~l~s~s~D~~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~s~~~d~~i~vwd 318 (321)
T 3ow8_A 260 DTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQDQVWGVKYNGNGSKIVSVGDDQEIHIYD 318 (321)
T ss_dssp SSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCCEEEEE
T ss_pred CCEEEEEeCCCcEEEEeCCCCEEEEEEcCCCCcEEEEEECCCCCEEEEEeCCCeEEEEe
Confidence 999999999999999999999887 6779999999999999999999999999999997
|
| >2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.8e-40 Score=364.46 Aligned_cols=289 Identities=17% Similarity=0.280 Sum_probs=261.5
Q ss_pred eeEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEE
Q 003236 545 FTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVW 624 (837)
Q Consensus 545 ~~~~~~l~~H~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IW 624 (837)
......+.+|.+.|+|++|+|++++||+|+.||+|+|||..+++....+..|...|.+++|+|++.+|++++.|+.|++|
T Consensus 54 ~~~~~~l~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~~~~v~~~~~sp~g~~lasg~~d~~i~v~ 133 (354)
T 2pbi_B 54 MKTRRTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSVY 133 (354)
T ss_dssp CCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCEEEECTTSSEEEEESTTSEEEEE
T ss_pred cEEEEEecCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcceEEecCCCCEEEEEECCCCCEEEEeeCCCCEEEE
Confidence 35678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EcCCCC-----ceeEEeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeeEEec-CCCeeEEEEec--CCCE
Q 003236 625 DTENPD-----YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQP--RLGR 696 (837)
Q Consensus 625 Dl~~~~-----~~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~-~~~i~sl~~sp--~g~~ 696 (837)
++.... .....+.+|...|.+++|+|++. .+++++.|++|++||+++++++..+.. ...+.++.|+| ++..
T Consensus 134 ~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~g~~ 212 (354)
T 2pbi_B 134 PLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDM-QILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNT 212 (354)
T ss_dssp ECCCCTTCCSGGGCEEEEECSSCEEEEEECSSSS-EEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECCCSSCCE
T ss_pred EEeccccccccccceeeeccCCcEEEEEEeCCCC-EEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEEeCCCCCE
Confidence 986432 23566778999999999999976 566899999999999999999988874 56789999987 4689
Q ss_pred EEEEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecC--CCceEE
Q 003236 697 ILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCT--GNKFHS 773 (837)
Q Consensus 697 llags~dg~I~iwDl~s~~~~~~l~~h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~--~~~I~s 773 (837)
|++++.|+.|++||+++++++..+.+|...|++++|+|++.+|++++ |+.|++||++.. ..+..+..+ ...+.+
T Consensus 213 l~sgs~Dg~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~---~~~~~~~~~~~~~~~~~ 289 (354)
T 2pbi_B 213 FVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRAD---REVAIYSKESIIFGASS 289 (354)
T ss_dssp EEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTT---EEEEEECCTTCCSCEEE
T ss_pred EEEEeCCCeEEEEECCCCcEEEEecCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCC---cEEEEEcCCCcccceeE
Confidence 99999999999999999999999999999999999999999999999 999999999886 444444432 357899
Q ss_pred EEEeCCCCEEEEEEcCCeEEEEECCCCcEE-EeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 003236 774 CVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 837 (837)
Q Consensus 774 v~fspdg~~L~sgs~dg~I~IwDl~s~~~~-~l~~h~~~V~sla~spdg~~LaSgs~DG~I~IWd 837 (837)
++|+|++.+|++++.|+.|++||+.+++.+ .+.+|...|++++|+|++++|++|+.||+|+||+
T Consensus 290 ~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~sgs~D~~v~vW~ 354 (354)
T 2pbi_B 290 VDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILFGHENRVSTLRVSPDGTAFCSGSWDHTLRVWA 354 (354)
T ss_dssp EEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEC
T ss_pred EEEeCCCCEEEEEECCCcEEEEECCCCceEEEEECCCCcEEEEEECCCCCEEEEEcCCCCEEecC
Confidence 999999999999999999999999888876 6789999999999999999999999999999997
|
| >3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.2e-41 Score=376.32 Aligned_cols=291 Identities=17% Similarity=0.337 Sum_probs=260.8
Q ss_pred eeeEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEE
Q 003236 544 TFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRV 623 (837)
Q Consensus 544 ~~~~~~~l~~H~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~I 623 (837)
.....+++.+|.+.|++++|+|++++||+|+.|++|+|||+.+++....+..|...|.+++|+|++++|++|+.|+.|+|
T Consensus 55 ~~~~~~~l~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~h~~~v~~~~~s~~g~~las~~~d~~v~i 134 (380)
T 3iz6_a 55 DLVCCRTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNGQSVACGGLDSACSI 134 (380)
T ss_dssp CCEEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECCCTTCCCCEECTTSSEEEECCSSSCCEE
T ss_pred eeEEeecccccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccceEEecCCCCEEEEEECCCCCEEEEeeCCCcEEE
Confidence 45567889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEcCCCC------ceeEEeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeeEEe------cCCCeeEEEEe
Q 003236 624 WDTENPD------YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK------CQSGATQMRFQ 691 (837)
Q Consensus 624 WDl~~~~------~~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~------~~~~i~sl~~s 691 (837)
||+.+.. .....+.+|...|.++.|.|++...|++|+.|++|++||+.+++++..+. +...+.++.|+
T Consensus 135 w~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~ 214 (380)
T 3iz6_a 135 FNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSIN 214 (380)
T ss_dssp EECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEEC
T ss_pred EECCCCccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeEEEEee
Confidence 9987532 13456789999999999999877778899999999999999999887763 34568999998
Q ss_pred c-CCCEEEEEEcCCeEEEEECC-CCeEEEEEcCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCC
Q 003236 692 P-RLGRILAAAIENYISILDVE-TQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTG 768 (837)
Q Consensus 692 p-~g~~llags~dg~I~iwDl~-s~~~~~~l~~h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~ 768 (837)
+ ++..+++++.|+.|++||++ ....+..+.+|...|++++|+|++.+|++++ |+.|+|||++++ .++..+..+.
T Consensus 215 ~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~---~~~~~~~~~~ 291 (380)
T 3iz6_a 215 SLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTG---HQLQVYNREP 291 (380)
T ss_dssp SSSCCEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSSEEEEECSSSCEEEEETTTT---EEEEEECCCC
T ss_pred cCCCCEEEEEECCCeEEEEECCCCCcceEEECCcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCC---cEEEEecccc
Confidence 7 78899999999999999998 4577888999999999999999999999999 999999999987 5555554332
Q ss_pred -------CceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE-Ee----ccCCCCeeEEEEeCCCCEEEEEECCCcEEEe
Q 003236 769 -------NKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TL----SAHDKLVSSLAASTVNGMVASASHDKCVKIW 836 (837)
Q Consensus 769 -------~~I~sv~fspdg~~L~sgs~dg~I~IwDl~s~~~~-~l----~~h~~~V~sla~spdg~~LaSgs~DG~I~IW 836 (837)
..+.+++|+|++.+|++++.|+.|++||+..++.+ .+ .+|.+.|++++|+|++.+|++|+.||+|+||
T Consensus 292 ~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~iW 371 (380)
T 3iz6_a 292 DRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSDGSALCTGSWDKNLKIW 371 (380)
T ss_dssp SSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCEEEEECCSCSSCCCCCCEEEECSSSSEEEEECTTSCEEEE
T ss_pred cccccccCceEEEEECCCCCEEEEEECCCCEEEEECCCCceEEEEecccCCCCCceEEEEECCCCCEEEEeeCCCCEEEE
Confidence 24889999999999999999999999999988876 33 5799999999999999999999999999999
Q ss_pred C
Q 003236 837 K 837 (837)
Q Consensus 837 d 837 (837)
+
T Consensus 372 ~ 372 (380)
T 3iz6_a 372 A 372 (380)
T ss_dssp E
T ss_pred e
Confidence 6
|
| >2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-39 Score=349.02 Aligned_cols=284 Identities=18% Similarity=0.310 Sum_probs=254.0
Q ss_pred eEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEE
Q 003236 546 TEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWD 625 (837)
Q Consensus 546 ~~~~~l~~H~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWD 625 (837)
....++.+|.+.|++++|+|++++|++|+.||+|+|||+.++..+..+..|...|.+++|+|++++|++|+.|++|++||
T Consensus 4 ~~~~~~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~vwd 83 (304)
T 2ynn_A 4 DIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFN 83 (304)
T ss_dssp CCEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEE
T ss_pred eeEEeecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCceeEEeeccCCcEEEEEEeCCCCEEEEECCCCEEEEEE
Confidence 34667889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCceeEEeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCe-eeeEEe-cCCCeeEEEEec-CCCEEEEEEc
Q 003236 626 TENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS-CAGVFK-CQSGATQMRFQP-RLGRILAAAI 702 (837)
Q Consensus 626 l~~~~~~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~-~i~~~~-~~~~i~sl~~sp-~g~~llags~ 702 (837)
+.+++ .+..+.+|...|.+++|+|++. ++++|+.|++|++||++++. +...+. +...|.+++|+| ++..|++++.
T Consensus 84 ~~~~~-~~~~~~~h~~~v~~~~~~~~~~-~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~ 161 (304)
T 2ynn_A 84 YNTGE-KVVDFEAHPDYIRSIAVHPTKP-YVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCL 161 (304)
T ss_dssp TTTCC-EEEEEECCSSCEEEEEECSSSS-EEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTTCTTEEEEEET
T ss_pred CCCCc-EEEEEeCCCCcEEEEEEcCCCC-EEEEECCCCeEEEEECCCCcchhhhhcccCCcEEEEEECCCCCCEEEEEeC
Confidence 99876 4788899999999999999976 66799999999999998874 444454 456799999999 5789999999
Q ss_pred CCeEEEEECCCCeEEEEEc-CCCCCEEEEEEcC--CCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeC
Q 003236 703 ENYISILDVETQVCRLKLQ-GHKNQVHSVCWNT--SGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHP 778 (837)
Q Consensus 703 dg~I~iwDl~s~~~~~~l~-~h~~~V~sl~~sp--dg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fsp 778 (837)
|+.|++||++.......+. +|...|..++|+| ++.+|++++ |+.|+|||++++ .++..+.+|...|.+++|+|
T Consensus 162 D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~---~~~~~~~~h~~~v~~~~~~p 238 (304)
T 2ynn_A 162 DRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTK---SCVATLEGHMSNVSFAVFHP 238 (304)
T ss_dssp TSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTT---EEEEEEECCSSCEEEEEECS
T ss_pred CCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCC---ccceeeCCCCCCEEEEEECC
Confidence 9999999998876655554 5668899999987 778999999 999999999987 78999999999999999999
Q ss_pred CCCEEEEEEcCCeEEEEECCCCcEE-EeccCCCCeeEEEEeCCCC--EEEEEECCCcEE
Q 003236 779 TFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNG--MVASASHDKCVK 834 (837)
Q Consensus 779 dg~~L~sgs~dg~I~IwDl~s~~~~-~l~~h~~~V~sla~spdg~--~LaSgs~DG~I~ 834 (837)
++.+|++++.|+.|++||+.+++.+ .+..|...+++++|+|++. +|++|++||.+.
T Consensus 239 ~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asg~~~g~~~ 297 (304)
T 2ynn_A 239 TLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGFDNGFTV 297 (304)
T ss_dssp SSSEEEEEETTSCEEEEETTTCCEEEEECCSSSSEEEEEECTTCGGGCEEEEETTEEEE
T ss_pred CCCEEEEEcCCCeEEEEECCCCceeeeccCCCccEEEEEECCCCCceEEEEecCCceEE
Confidence 9999999999999999999999887 6778899999999999885 688888777543
|
| >3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.3e-39 Score=349.40 Aligned_cols=289 Identities=19% Similarity=0.334 Sum_probs=251.8
Q ss_pred CeeeeEEEEecCCCCCeEEEEEcCCC-CEEEEEECCCcEEEEeCCC-----CeEEEEeccCCCCeEEEEEcCCCCEEEEE
Q 003236 542 GFTFTEFQLIPASTSKVESCHFSPDG-KLLATGGHDKKAVLWCTES-----FTVKSTLEEHTQWITDVRFSPSLSRLATS 615 (837)
Q Consensus 542 g~~~~~~~~l~~H~~~V~sl~fSpdg-~~Lasgs~Dg~I~VWd~~t-----~~~~~~l~~h~~~I~~l~fspdg~~Latg 615 (837)
...+....++.+|.+.|++++|+|++ ++|++|+.|++|++|++.. +..+..+.+|...|.+++|+|++++|++|
T Consensus 4 ~~~~~l~~~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~ 83 (319)
T 3frx_A 4 NEVLVLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSA 83 (319)
T ss_dssp CEEEEEEEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSSEEEEE
T ss_pred ceEEEEEEEEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCCEEEEE
Confidence 34566778899999999999999965 8999999999999999763 34567889999999999999999999999
Q ss_pred eCCCeEEEEEcCCCCceeEEeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeeEEecCCCeeEEEEecC--
Q 003236 616 SADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPR-- 693 (837)
Q Consensus 616 s~Dg~I~IWDl~~~~~~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~~~~i~sl~~sp~-- 693 (837)
+.|++|+|||+.+++ .+..+.+|...|.+++|+|++. ++++++.|+.|++||++.........+...+.++.|.|.
T Consensus 84 s~D~~v~~wd~~~~~-~~~~~~~h~~~v~~~~~~~~~~-~l~s~s~D~~i~vwd~~~~~~~~~~~h~~~v~~~~~~~~~~ 161 (319)
T 3frx_A 84 SWDKTLRLWDVATGE-TYQRFVGHKSDVMSVDIDKKAS-MIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEK 161 (319)
T ss_dssp ETTSEEEEEETTTTE-EEEEEECCSSCEEEEEECTTSC-EEEEEETTSCEEEEETTSCEEEEECCCSSCEEEEEECCC--
T ss_pred eCCCEEEEEECCCCC-eeEEEccCCCcEEEEEEcCCCC-EEEEEeCCCeEEEEECCCCeEEEEeccCCcEEEEEEccCCC
Confidence 999999999999866 4788899999999999999976 667999999999999985544444445677999999985
Q ss_pred ----CCEEEEEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCC
Q 003236 694 ----LGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTG 768 (837)
Q Consensus 694 ----g~~llags~dg~I~iwDl~s~~~~~~l~~h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~ 768 (837)
+..+++++.|+.|++||+++.+....+.+|...|.+++|+|++.+|++++ |+.|+|||+.++ .++..+.. .
T Consensus 162 ~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~---~~~~~~~~-~ 237 (319)
T 3frx_A 162 ADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAK---KAMYTLSA-Q 237 (319)
T ss_dssp ----CCEEEEEETTSCEEEEETTTTEEEEEECCCCSCEEEEEECTTSSEEEEEETTCEEEEEETTTT---EEEEEEEC-C
T ss_pred CCCCccEEEEEeCCCEEEEEECCcchhheeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCC---cEEEEecC-C
Confidence 44899999999999999999999999999999999999999999999999 999999999987 66666664 4
Q ss_pred CceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEEE-e--------ccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 003236 769 NKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLT-L--------SAHDKLVSSLAASTVNGMVASASHDKCVKIWK 837 (837)
Q Consensus 769 ~~I~sv~fspdg~~L~sgs~dg~I~IwDl~s~~~~~-l--------~~h~~~V~sla~spdg~~LaSgs~DG~I~IWd 837 (837)
..|.+++|+|++.+|++++. +.|++|++.....+. + ..|...|.+++|+|||++|++|+.||.|+|||
T Consensus 238 ~~v~~~~~sp~~~~la~~~~-~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~sg~~Dg~i~vWd 314 (319)
T 3frx_A 238 DEVFSLAFSPNRYWLAAATA-TGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQ 314 (319)
T ss_dssp SCEEEEEECSSSSEEEEEET-TEEEEEEETTEEEEEEECCCCTTCCGGGCCCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred CcEEEEEEcCCCCEEEEEcC-CCcEEEEeCcCeeeeccCccccccccCcCcceeEEEECCCCCEEEEeecCceEEEEE
Confidence 68999999999998877765 469999998876652 2 23567899999999999999999999999996
|
| >1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-39 Score=383.70 Aligned_cols=333 Identities=17% Similarity=0.276 Sum_probs=270.8
Q ss_pred CCCccccCCCeEEcccCCCceEEeecCCCCCCC------------------------------CccccccccCCCeeeeE
Q 003236 498 APNQLTDMDRFVDDGSLDDNVESFLSPDDADPR------------------------------DRVGRSAEVGKGFTFTE 547 (837)
Q Consensus 498 ~~~~l~~~~~~v~~Gs~D~~v~~w~s~~~~~~~------------------------------~~~~~~~~~~~g~~~~~ 547 (837)
....+.+...++++|+.|++|++|......... +..+.++.++.+. .
T Consensus 63 ~~~~~spdg~~lasg~~d~~v~lWd~~~~~~~~~~~~~~~~~~v~~v~fs~dg~~l~~~~~~~~~~~~v~~wd~~~---~ 139 (611)
T 1nr0_A 63 TVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGT---S 139 (611)
T ss_dssp EEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTTCC---B
T ss_pred EEEEECCCCcEEEEEeCCCCEEEeECCCCcceeeEeecccCCceEEEEECCCCCEEEEEECCCCceeEEEEeeCCC---C
Confidence 344455667899999999999999764321100 0001122222221 2
Q ss_pred EEEecCCCCCeEEEEEcCCCC-EEEEEECCCcEEEEeCCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEc
Q 003236 548 FQLIPASTSKVESCHFSPDGK-LLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDT 626 (837)
Q Consensus 548 ~~~l~~H~~~V~sl~fSpdg~-~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl 626 (837)
...+.+|.+.|++++|+|++. +|++|+.|++|++||..++++..++.+|...|.+++|+|++++|++++.|++|+|||+
T Consensus 140 ~~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~fspdg~~las~s~D~~i~lwd~ 219 (611)
T 1nr0_A 140 NGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNG 219 (611)
T ss_dssp CBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEET
T ss_pred cceecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCCeEeeeeccccCceEEEEECCCCCEEEEEECCCcEEEEEC
Confidence 345789999999999999987 6999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCceeEEee-------ccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeeEEe-------------------
Q 003236 627 ENPDYSLRTFT-------GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK------------------- 680 (837)
Q Consensus 627 ~~~~~~~~~~~-------~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~------------------- 680 (837)
.+++. +..+. +|...|.+++|+|++. +|++++.|++|++||+.+++++..+.
T Consensus 220 ~~g~~-~~~~~~~~~~~~~h~~~V~~v~~spdg~-~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 297 (611)
T 1nr0_A 220 VDGTK-TGVFEDDSLKNVAHSGSVFGLTWSPDGT-KIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQAL 297 (611)
T ss_dssp TTCCE-EEECBCTTSSSCSSSSCEEEEEECTTSS-EEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCE
T ss_pred CCCcE-eeeeccccccccccCCCEEEEEECCCCC-EEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEE
Confidence 88664 45552 7999999999999976 66799999999999999887665432
Q ss_pred -------------------------cCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEE-c-------------
Q 003236 681 -------------------------CQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKL-Q------------- 721 (837)
Q Consensus 681 -------------------------~~~~i~sl~~sp~g~~llags~dg~I~iwDl~s~~~~~~l-~------------- 721 (837)
+...|.+++|+|++.+|++++.|+.|++||+.++.+...+ .
T Consensus 298 ~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~~~~~~~~~~h~~~v~~~~~s~ 377 (611)
T 1nr0_A 298 VSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTS 377 (611)
T ss_dssp EEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECT
T ss_pred EEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeecccCCcceEEEEEECC
Confidence 2456899999999999999999999999999876443221 0
Q ss_pred --------------------------------------------------------------------CCCCCEEEEEEc
Q 003236 722 --------------------------------------------------------------------GHKNQVHSVCWN 733 (837)
Q Consensus 722 --------------------------------------------------------------------~h~~~V~sl~~s 733 (837)
.|...+.+++|+
T Consensus 378 ~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~va~s 457 (611)
T 1nr0_A 378 KGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALS 457 (611)
T ss_dssp TSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEEC
T ss_pred CCcEEEEEcCCceEEeecCCccccccceeeeecCCCCcEEEEeCCCcEEEEEeCceEEEEeCCceeeeecCCCceEEEEe
Confidence 123457889999
Q ss_pred CCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCC-CcEEE---eccC
Q 003236 734 TSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTE-NKTLT---LSAH 808 (837)
Q Consensus 734 pdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fspdg~~L~sgs~dg~I~IwDl~s-~~~~~---l~~h 808 (837)
||+++|++++ |+.|+|||+.++.. ..+.. ..|...|.+++|+|++++|++++.|++|++||+.+ +++.. +..|
T Consensus 458 pdg~~lasgs~D~~v~lwd~~~~~~-~~~~~-~~h~~~v~~v~fspdg~~las~s~d~~v~~w~~~~~~~~~~~~~~~~H 535 (611)
T 1nr0_A 458 NDKQFVAVGGQDSKVHVYKLSGASV-SEVKT-IVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFH 535 (611)
T ss_dssp TTSCEEEEEETTSEEEEEEEETTEE-EEEEE-EECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCCCCCC
T ss_pred CCCCEEEEeCCCCeEEEEEccCCce-eeeec-cCCCCceEEEEECCCCCEEEEEcCCCCEEEEEcCCCCceeeeeeeeec
Confidence 9999999999 99999999987521 22333 67889999999999999999999999999999987 55542 2349
Q ss_pred CCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 003236 809 DKLVSSLAASTVNGMVASASHDKCVKIWK 837 (837)
Q Consensus 809 ~~~V~sla~spdg~~LaSgs~DG~I~IWd 837 (837)
...|++++|+||+++||+|+.|++|+|||
T Consensus 536 ~~~V~~v~fspdg~~lasgs~D~~v~lW~ 564 (611)
T 1nr0_A 536 TAKVACVSWSPDNVRLATGSLDNSVIVWN 564 (611)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred ccceeEEEECCCCCEEEEEECCCcEEEEE
Confidence 99999999999999999999999999996
|
| >3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.9e-39 Score=354.08 Aligned_cols=292 Identities=25% Similarity=0.432 Sum_probs=250.3
Q ss_pred eeEEEEecCCCC-CeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEE---EeccCCCCeEEEEEcCCCCEEEEEeCCCe
Q 003236 545 FTEFQLIPASTS-KVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKS---TLEEHTQWITDVRFSPSLSRLATSSADRT 620 (837)
Q Consensus 545 ~~~~~~l~~H~~-~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~~~---~l~~h~~~I~~l~fspdg~~Latgs~Dg~ 620 (837)
+..+..+.+|.+ .|++++|+|+|++||+|+.|++|+|||+.++.... ...+|...|.+++|+|++++|++++.|++
T Consensus 5 ~~~~~~~~~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~~ 84 (345)
T 3fm0_A 5 LVLLGRVPAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDAT 84 (345)
T ss_dssp EEEEEEECCSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEETTSC
T ss_pred EEEeeeecCCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEECCCc
Confidence 456788999998 99999999999999999999999999998876432 23689999999999999999999999999
Q ss_pred EEEEEcCCCCc-eeEEeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCee---eeEEe-cCCCeeEEEEecCCC
Q 003236 621 VRVWDTENPDY-SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSC---AGVFK-CQSGATQMRFQPRLG 695 (837)
Q Consensus 621 I~IWDl~~~~~-~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~---i~~~~-~~~~i~sl~~sp~g~ 695 (837)
|+|||+..... .+..+.+|...|.+++|+|++. +|++|+.|+.|++||+.++.. +..+. +...|.+++|+|++.
T Consensus 85 v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~-~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~ 163 (345)
T 3fm0_A 85 TCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGN-LLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQE 163 (345)
T ss_dssp EEEEEECCC-EEEEEEECCCSSCEEEEEECTTSS-EEEEEETTSCEEEEEECTTSCEEEEEEECCCCSCEEEEEECSSSS
T ss_pred EEEEEccCCCeEEEEEccCCCCCceEEEEeCCCC-EEEEEECCCeEEEEECCCCCCeEEEEEecCcCCCeEEEEECCCCC
Confidence 99999987653 4678889999999999999976 677999999999999987643 33443 356799999999999
Q ss_pred EEEEEEcCCeEEEEECCCCe--EEEEEcCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCC------------cee
Q 003236 696 RILAAAIENYISILDVETQV--CRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSK------------GEC 760 (837)
Q Consensus 696 ~llags~dg~I~iwDl~s~~--~~~~l~~h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~------------~~~ 760 (837)
+|++++.|+.|++||++++. +...+.+|...|.+++|+|++.+|++++ |+.|+|||...... ..+
T Consensus 164 ~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~ 243 (345)
T 3fm0_A 164 LLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKC 243 (345)
T ss_dssp CEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEEECTTCTTCCCCC---CEEEE
T ss_pred EEEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEeCCCeEEEeccccCCCCccceeeccCCccce
Confidence 99999999999999998874 5578889999999999999999999999 99999999743221 133
Q ss_pred EEEeec-CCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCc--------EE--EeccCCCCeeEEEEeCCC-CEEEEEE
Q 003236 761 IHELSC-TGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENK--------TL--TLSAHDKLVSSLAASTVN-GMVASAS 828 (837)
Q Consensus 761 i~~~~~-~~~~I~sv~fspdg~~L~sgs~dg~I~IwDl~s~~--------~~--~l~~h~~~V~sla~spdg-~~LaSgs 828 (837)
+..+.. |...|.+++|+|++..|++++.|+.|++|+...+. .. ...+|...|++++|+|++ .+||+|+
T Consensus 244 ~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~laS~s 323 (345)
T 3fm0_A 244 ICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCVAWNPKEPGLLASCS 323 (345)
T ss_dssp EEEECSSCSSCEEEEEECTTTCCEEEEETTSCEEEEEECTTSCTTSCCEEEEEEETTSSSSCEEEEEECSSSTTEEEEEE
T ss_pred eEEecCCCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCcceeeEEEEeeecccccCcEeEeEEeCCCceEEEEcC
Confidence 444544 77899999999999999999999999999987543 11 235899999999999998 5999999
Q ss_pred CCCcEEEeC
Q 003236 829 HDKCVKIWK 837 (837)
Q Consensus 829 ~DG~I~IWd 837 (837)
.||+|+|||
T Consensus 324 ~Dg~v~~W~ 332 (345)
T 3fm0_A 324 DDGEVAFWK 332 (345)
T ss_dssp TTSCEEEEE
T ss_pred CCCcEEEEE
Confidence 999999996
|
| >1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=8.3e-39 Score=359.31 Aligned_cols=282 Identities=28% Similarity=0.455 Sum_probs=251.9
Q ss_pred CCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEeccCCC------------------CeEEEEEcCCCCEEEE
Q 003236 553 ASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQ------------------WITDVRFSPSLSRLAT 614 (837)
Q Consensus 553 ~H~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~------------------~I~~l~fspdg~~Lat 614 (837)
+|.+.|+|++|+|||++||+|+ +++++||++.+++.+..+..|.. .|.+++|+|++++|++
T Consensus 62 ~h~~~V~~v~fspdg~~la~g~-~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~s 140 (393)
T 1erj_A 62 DHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLAT 140 (393)
T ss_dssp ECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEEE
T ss_pred CCCCEEEEEEECCCCCEEEEEc-CCcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEECCCCCEEEE
Confidence 6999999999999999999986 68999999999998888765542 4999999999999999
Q ss_pred EeCCCeEEEEEcCCCCceeEEeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeeEEecCCCeeEEEEec-C
Q 003236 615 SSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQP-R 693 (837)
Q Consensus 615 gs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~~~~i~sl~~sp-~ 693 (837)
|+.|++|+|||+.+++ .+..+.+|...|.+++|+|++. +|++++.|+.|++||++++++...+.....+.+++|+| +
T Consensus 141 ~~~d~~i~iwd~~~~~-~~~~~~~h~~~v~~~~~~p~~~-~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~ 218 (393)
T 1erj_A 141 GAEDRLIRIWDIENRK-IVMILQGHEQDIYSLDYFPSGD-KLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGD 218 (393)
T ss_dssp EETTSCEEEEETTTTE-EEEEECCCSSCEEEEEECTTSS-EEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECSTT
T ss_pred EcCCCeEEEEECCCCc-EEEEEccCCCCEEEEEEcCCCC-EEEEecCCCcEEEEECCCCeeEEEEEcCCCcEEEEEECCC
Confidence 9999999999999765 4778899999999999999977 56699999999999999999999998888999999999 8
Q ss_pred CCEEEEEEcCCeEEEEECCCCeEEEEE-------cCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCC--------
Q 003236 694 LGRILAAAIENYISILDVETQVCRLKL-------QGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSK-------- 757 (837)
Q Consensus 694 g~~llags~dg~I~iwDl~s~~~~~~l-------~~h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~-------- 757 (837)
+.+|++++.|+.|++||++++..+..+ .+|...|.+++|+|++.+|++++ |+.|++||+++...
T Consensus 219 ~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~ 298 (393)
T 1erj_A 219 GKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPN 298 (393)
T ss_dssp CCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC-------------
T ss_pred CCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCEEEEEECCCCCCcccccCCC
Confidence 899999999999999999999887776 57899999999999999999999 99999999976421
Q ss_pred -ceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE-EeccCCCCeeEEEEeC------CCCEEEEEEC
Q 003236 758 -GECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAAST------VNGMVASASH 829 (837)
Q Consensus 758 -~~~i~~~~~~~~~I~sv~fspdg~~L~sgs~dg~I~IwDl~s~~~~-~l~~h~~~V~sla~sp------dg~~LaSgs~ 829 (837)
..+...+.+|...|.+++|++++.+|++++.|+.|++||+.+++.+ .+.+|...|.+++|++ ++.+||+|+.
T Consensus 299 ~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~~~~l~~h~~~v~~v~~~~~~~~~p~~~~l~sgs~ 378 (393)
T 1erj_A 299 SGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSG 378 (393)
T ss_dssp --CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSCTTCTTCEEEEEEET
T ss_pred CCcceEEEecccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEECCCCCCEEEEEecCCcCcCCCCCEEEEECC
Confidence 2456677889999999999999999999999999999999999877 6789999999999986 6889999999
Q ss_pred CCcEEEeC
Q 003236 830 DKCVKIWK 837 (837)
Q Consensus 830 DG~I~IWd 837 (837)
||+|+|||
T Consensus 379 Dg~i~iW~ 386 (393)
T 1erj_A 379 DCKARIWK 386 (393)
T ss_dssp TSEEEEEE
T ss_pred CCcEEECc
Confidence 99999996
|
| >1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-39 Score=383.67 Aligned_cols=306 Identities=22% Similarity=0.341 Sum_probs=259.9
Q ss_pred eEEcccCCCceEEeecCCCCCCCCccccccccCCCeeeeEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCC
Q 003236 508 FVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESF 587 (837)
Q Consensus 508 ~v~~Gs~D~~v~~w~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~H~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~ 587 (837)
.+++|+.|++|++|.... ......+.+|.+.|++++|+|||++||+|+.|++|+|||+.++
T Consensus 162 ~l~s~s~D~~v~lwd~~~-------------------~~~~~~l~~H~~~V~~v~fspdg~~las~s~D~~i~lwd~~~g 222 (611)
T 1nr0_A 162 RIISGSDDNTVAIFEGPP-------------------FKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDG 222 (611)
T ss_dssp EEEEEETTSCEEEEETTT-------------------BEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTC
T ss_pred EEEEEeCCCeEEEEECCC-------------------CeEeeeeccccCceEEEEECCCCCEEEEEECCCcEEEEECCCC
Confidence 589999999999995321 2345678899999999999999999999999999999999999
Q ss_pred eEEEEec-------cCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCce----------------------------
Q 003236 588 TVKSTLE-------EHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYS---------------------------- 632 (837)
Q Consensus 588 ~~~~~l~-------~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~~~~~---------------------------- 632 (837)
+.+..+. +|.+.|.+++|+|++++|++++.|++|+|||+.+++..
T Consensus 223 ~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~ 302 (611)
T 1nr0_A 223 TKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISA 302 (611)
T ss_dssp CEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEET
T ss_pred cEeeeeccccccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEEEEeC
Confidence 9988884 79999999999999999999999999999999865421
Q ss_pred --------------eEEeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeeEE-------------------
Q 003236 633 --------------LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVF------------------- 679 (837)
Q Consensus 633 --------------~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~------------------- 679 (837)
...+.+|...|.+++|+|++. +|++++.|+.|++||+.++.+...+
T Consensus 303 d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~-~l~s~s~D~~v~~Wd~~~~~~~~~~~~~h~~~v~~~~~s~~~~l 381 (611)
T 1nr0_A 303 NGFINFVNPELGSIDQVRYGHNKAITALSSSADGK-TLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDL 381 (611)
T ss_dssp TCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSS-EEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCE
T ss_pred CCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCC-EEEEEeCCCcEEEEECCCCceeeecccCCcceEEEEEECCCCcE
Confidence 234457999999999999977 5669999999999999876543221
Q ss_pred ----------------------------------------------------------------ecCCCeeEEEEecCCC
Q 003236 680 ----------------------------------------------------------------KCQSGATQMRFQPRLG 695 (837)
Q Consensus 680 ----------------------------------------------------------------~~~~~i~sl~~sp~g~ 695 (837)
.+...+.+++|+|++.
T Consensus 382 ~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~va~spdg~ 461 (611)
T 1nr0_A 382 FTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSNDKQ 461 (611)
T ss_dssp EEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEECTTSC
T ss_pred EEEEcCCceEEeecCCccccccceeeeecCCCCcEEEEeCCCcEEEEEeCceEEEEeCCceeeeecCCCceEEEEeCCCC
Confidence 0113467899999999
Q ss_pred EEEEEEcCCeEEEEECCCCeE--EEEEcCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEE--eecCCCc
Q 003236 696 RILAAAIENYISILDVETQVC--RLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHE--LSCTGNK 770 (837)
Q Consensus 696 ~llags~dg~I~iwDl~s~~~--~~~l~~h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~--~~~~~~~ 770 (837)
+|++++.|+.|++||+..+.. +.. .+|...|++++|+|++++|++++ |+.|++||+.+.. ..+.. +..|...
T Consensus 462 ~lasgs~D~~v~lwd~~~~~~~~~~~-~~h~~~v~~v~fspdg~~las~s~d~~v~~w~~~~~~--~~~~~~~~~~H~~~ 538 (611)
T 1nr0_A 462 FVAVGGQDSKVHVYKLSGASVSEVKT-IVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNF--ELAHTNSWTFHTAK 538 (611)
T ss_dssp EEEEEETTSEEEEEEEETTEEEEEEE-EECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTT--EESCCCCCCCCSSC
T ss_pred EEEEeCCCCeEEEEEccCCceeeeec-cCCCCceEEEEECCCCCEEEEEcCCCCEEEEEcCCCC--ceeeeeeeeecccc
Confidence 999999999999999987643 333 57999999999999999999999 9999999998732 33332 3348899
Q ss_pred eEEEEEeCCCCEEEEEEcCCeEEEEECCCCc--E-EEeccC-CCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 003236 771 FHSCVFHPTFPSLLVIGCYETLELWNMTENK--T-LTLSAH-DKLVSSLAASTVNGMVASASHDKCVKIWK 837 (837)
Q Consensus 771 I~sv~fspdg~~L~sgs~dg~I~IwDl~s~~--~-~~l~~h-~~~V~sla~spdg~~LaSgs~DG~I~IWd 837 (837)
|.+++|+|++++|++++.|++|+|||+.++. . ..+.+| ...|++++|+|++. |++++.||+|+|||
T Consensus 539 V~~v~fspdg~~lasgs~D~~v~lW~~~~~~~~~~~~~~~h~~~~v~~v~fs~d~~-l~s~~~D~~i~lW~ 608 (611)
T 1nr0_A 539 VACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETT-IVSAGQDSNIKFWN 608 (611)
T ss_dssp EEEEEECTTSSEEEEEETTSCEEEEETTCTTSCCEEETTSSTTSCEEEEEEEETTE-EEEEETTSCEEEEE
T ss_pred eeEEEECCCCCEEEEEECCCcEEEEECCCcccccchhhccCcccCeeEEEEcCCCE-EEEecCCCCEEEEe
Confidence 9999999999999999999999999998765 2 355688 89999999999998 99999999999996
|
| >4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ... | Back alignment and structure |
|---|
Probab=100.00 E-value=5.3e-38 Score=339.60 Aligned_cols=288 Identities=24% Similarity=0.459 Sum_probs=258.7
Q ss_pred eeEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEE
Q 003236 545 FTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVW 624 (837)
Q Consensus 545 ~~~~~~l~~H~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IW 624 (837)
+....++.+|.+.|++++|+|++++||+|+.||.|+||++.+++....+.+|...|.+++|+|++++|++++.|+.|++|
T Consensus 13 ~~~~~~~~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vw 92 (312)
T 4ery_A 13 YALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIW 92 (312)
T ss_dssp CEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEE
T ss_pred ceeEEEEcccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcccchhhccCCCceEEEEEcCCCCEEEEECCCCEEEEE
Confidence 34567789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EcCCCCceeEEeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeeEEec-CCCeeEEEEecCCCEEEEEEcC
Q 003236 625 DTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAIE 703 (837)
Q Consensus 625 Dl~~~~~~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~-~~~i~sl~~sp~g~~llags~d 703 (837)
|+.+++ .+..+.+|...|.+++|+|++. ++++++.|+.|++||+++++++..+.. ...+.+++|+|++..+++++.|
T Consensus 93 d~~~~~-~~~~~~~~~~~v~~~~~~~~~~-~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 170 (312)
T 4ery_A 93 DVSSGK-CLKTLKGHSNYVFCCNFNPQSN-LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYD 170 (312)
T ss_dssp ETTTCC-EEEEEECCSSCEEEEEECSSSS-EEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETT
T ss_pred ECCCCc-EEEEEcCCCCCEEEEEEcCCCC-EEEEEeCCCcEEEEECCCCEEEEEecCCCCcEEEEEEcCCCCEEEEEeCC
Confidence 999866 4788899999999999999976 667999999999999999998888764 5679999999999999999999
Q ss_pred CeEEEEECCCCeEEEEEc-CCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCce---EEEEEeC
Q 003236 704 NYISILDVETQVCRLKLQ-GHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKF---HSCVFHP 778 (837)
Q Consensus 704 g~I~iwDl~s~~~~~~l~-~h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I---~sv~fsp 778 (837)
+.|++||+++++.+..+. .+...+.+++|+|++.+|++++ |+.|++||++++ .++..+..|...+ ......+
T Consensus 171 ~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~---~~~~~~~~~~~~~~~~~~~~~~~ 247 (312)
T 4ery_A 171 GLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKG---KCLKTYTGHKNEKYCIFANFSVT 247 (312)
T ss_dssp SCEEEEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEEETTTEEEEEETTTT---EEEEEECSSCCSSSCCCEEEECS
T ss_pred CcEEEEECCCCceeeEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCC---cEEEEEEecCCceEEEEEEEEeC
Confidence 999999999998877764 4667899999999999999999 999999999887 6777777766543 2233346
Q ss_pred CCCEEEEEEcCCeEEEEECCCCcEE-EeccCCCCeeEEEEeCCCCEEEEEE--CCCcEEEeC
Q 003236 779 TFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASAS--HDKCVKIWK 837 (837)
Q Consensus 779 dg~~L~sgs~dg~I~IwDl~s~~~~-~l~~h~~~V~sla~spdg~~LaSgs--~DG~I~IWd 837 (837)
++.+|++++.|+.|++||+.+++.+ .+.+|...|.+++|+|++.+|++++ .|+.|+||+
T Consensus 248 ~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~~~d~~i~~W~ 309 (312)
T 4ery_A 248 GGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWK 309 (312)
T ss_dssp SSCEEEECCTTSCEEEEETTTCCEEEEECCCSSCEEEEEECSSSSEEEEEECTTTCCEEEEE
T ss_pred CCcEEEEECCCCEEEEEECCCchhhhhhhccCCcEEEEeecCcCCceEEEEccCCccEEEec
Confidence 7889999999999999999999887 7789999999999999999999997 699999996
|
| >2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-38 Score=346.64 Aligned_cols=287 Identities=18% Similarity=0.355 Sum_probs=243.6
Q ss_pred eeeEEEEecCCCCCeEEEEE-----cC-CCCEEEEEECCCcEEEEeCCC-------CeEEEEeccCCCCeEEEEEcCCCC
Q 003236 544 TFTEFQLIPASTSKVESCHF-----SP-DGKLLATGGHDKKAVLWCTES-------FTVKSTLEEHTQWITDVRFSPSLS 610 (837)
Q Consensus 544 ~~~~~~~l~~H~~~V~sl~f-----Sp-dg~~Lasgs~Dg~I~VWd~~t-------~~~~~~l~~h~~~I~~l~fspdg~ 610 (837)
.+.....+.+|.+.|++++| ++ |+++||+|+.|++|+|||+.+ +.....+.+|...|.+++|+|++.
T Consensus 10 ~~~~~~~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~ 89 (343)
T 2xzm_R 10 QVVKRGILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENC 89 (343)
T ss_dssp EEEEEEEEECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTT
T ss_pred EeeeeeeeccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCC
Confidence 34567789999999999999 77 999999999999999999874 356678899999999999999999
Q ss_pred EEEEEeCCCeEEEEEcCCCCceeEEeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeeEE---ecCCCeeE
Q 003236 611 RLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVF---KCQSGATQ 687 (837)
Q Consensus 611 ~Latgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~---~~~~~i~s 687 (837)
+|++++.|++|+|||+.++. .+..+.+|...|.+++|+|++. ++++++.|+.|++||+......... .+...+.+
T Consensus 90 ~l~s~s~D~~v~lwd~~~~~-~~~~~~~h~~~v~~v~~sp~~~-~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~v~~ 167 (343)
T 2xzm_R 90 FAISSSWDKTLRLWDLRTGT-TYKRFVGHQSEVYSVAFSPDNR-QILSAGAEREIKLWNILGECKFSSAEKENHSDWVSC 167 (343)
T ss_dssp EEEEEETTSEEEEEETTSSC-EEEEEECCCSCEEEEEECSSTT-EEEEEETTSCEEEEESSSCEEEECCTTTSCSSCEEE
T ss_pred EEEEEcCCCcEEEEECCCCc-EEEEEcCCCCcEEEEEECCCCC-EEEEEcCCCEEEEEeccCCceeeeecccCCCceeee
Confidence 99999999999999999866 4788899999999999999977 5668999999999999844332222 23556999
Q ss_pred EEEecCC----------CEEEEEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCC
Q 003236 688 MRFQPRL----------GRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGS 756 (837)
Q Consensus 688 l~~sp~g----------~~llags~dg~I~iwDl~s~~~~~~l~~h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~ 756 (837)
++|+|++ .++++++.|+.|++|| ........+.+|...|.+++|+|++++|++++ |+.|+|||+....
T Consensus 168 ~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd-~~~~~~~~~~~h~~~v~~~~~s~~g~~l~sgs~dg~v~iwd~~~~~ 246 (343)
T 2xzm_R 168 VRYSPIMKSANKVQPFAPYFASVGWDGRLKVWN-TNFQIRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWDILNLT 246 (343)
T ss_dssp EEECCCCCSCSCCCSSCCEEEEEETTSEEEEEE-TTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTCEEEEEESSCCS
T ss_pred eeeccccccccccCCCCCEEEEEcCCCEEEEEc-CCCceeEEEcCccccceEEEECCCCCEEEEEcCCCeEEEEECCCCc
Confidence 9999986 6899999999999999 45677788889999999999999999999999 9999999995542
Q ss_pred CceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE---Eec-----------cCCCCeeEEEEeCCCC
Q 003236 757 KGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL---TLS-----------AHDKLVSSLAASTVNG 822 (837)
Q Consensus 757 ~~~~i~~~~~~~~~I~sv~fspdg~~L~sgs~dg~I~IwDl~s~~~~---~l~-----------~h~~~V~sla~spdg~ 822 (837)
.....+ .+...|.+++|+|++.+++ ++.|+.|++||+.+++.. .+. +|...|.+++|+|+++
T Consensus 247 --~~~~~~-~~~~~v~~v~~sp~~~~la-~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~ 322 (343)
T 2xzm_R 247 --YPQREF-DAGSTINQIAFNPKLQWVA-VGTDQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKGKNPQCTSLAWNALGK 322 (343)
T ss_dssp --SCSEEE-ECSSCEEEEEECSSSCEEE-EEESSCEEEEESSSCCSCSEEECCCCSGGGBTTBCCSCCCEEEEEECSSSC
T ss_pred --ccceee-cCCCcEEEEEECCCCCEEE-EECCCCEEEEEeCCCCCCceEEeecCcchhhhhhcCCCCceEEEEECCCCC
Confidence 222233 2456799999999998665 566888999999876533 222 6788999999999999
Q ss_pred EEEEEECCCcEEEeC
Q 003236 823 MVASASHDKCVKIWK 837 (837)
Q Consensus 823 ~LaSgs~DG~I~IWd 837 (837)
+|++|+.||.|+|||
T Consensus 323 ~l~sg~~Dg~v~~w~ 337 (343)
T 2xzm_R 323 KLFAGFTDGVIRTFS 337 (343)
T ss_dssp CEEEEETTSEEEEEE
T ss_pred eEEEecCCceEEEEE
Confidence 999999999999996
|
| >2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-37 Score=363.13 Aligned_cols=306 Identities=27% Similarity=0.445 Sum_probs=269.5
Q ss_pred cccCCCeEEcccCCCceEEeecCCCCCCCCccccccccCCCeeeeEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEE
Q 003236 502 LTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVL 581 (837)
Q Consensus 502 l~~~~~~v~~Gs~D~~v~~w~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~H~~~V~sl~fSpdg~~Lasgs~Dg~I~V 581 (837)
+.+...++++++.|+.+++|.... ..+..+.+|...|++++|+|++++|++++.|+.|++
T Consensus 270 ~~~d~~~l~~~~~d~~i~~w~~~~--------------------~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~d~~i~~ 329 (577)
T 2ymu_A 270 FRPDGQTIASASDDKTVKLWNRNG--------------------QLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKL 329 (577)
T ss_dssp ECTTSSEEEEEETTSCEEEEETTS--------------------CEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEE
T ss_pred EcCCCCEEEEEeCCCEEEEEeCCC--------------------cEEEEEecCCCCeEEEEECCCCCEEEEEeCCCeEEE
Confidence 344567889999999999995321 134567899999999999999999999999999999
Q ss_pred EeCCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeEEeeccccceEEEEEcCCCCeEEEEEeC
Q 003236 582 WCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDN 661 (837)
Q Consensus 582 Wd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~sl~fspdg~~llasgs~ 661 (837)
||... ..+..+..|...|.+++|+|++++|++++.|+.|++||... ..+..+.+|...|.+++|+|++. +|++++.
T Consensus 330 w~~~~-~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~~~--~~~~~~~~~~~~v~~~~~s~dg~-~l~~~~~ 405 (577)
T 2ymu_A 330 WNRNG-QHLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNG--QLLQTLTGHSSSVRGVAFSPDGQ-TIASASD 405 (577)
T ss_dssp EETTS-CEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTC--CEEEEEECCSSCEEEEEECTTSS-CEEEEET
T ss_pred EeCCC-CeeEEEeCCCCCEEEEEECCCCCEEEEEeCCCEEEEEcCCC--CEEEEecCCCCCeEEEEECCCCC-EEEEEeC
Confidence 99765 45667889999999999999999999999999999999653 34788889999999999999987 5568889
Q ss_pred CCcEEEEECCCCeeeeEEe-cCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEcCCCCEEE
Q 003236 662 NSEIRYWSINNGSCAGVFK-CQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLA 740 (837)
Q Consensus 662 Dg~I~vwDl~t~~~i~~~~-~~~~i~sl~~sp~g~~llags~dg~I~iwDl~s~~~~~~l~~h~~~V~sl~~spdg~~La 740 (837)
|+.|++||.. ++.+..+. +...|.+++|+|++.++++++.|+.|++||. +++.+..+.+|...|++++|+|++++|+
T Consensus 406 d~~v~~~~~~-~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~-~~~~~~~~~~~~~~v~~~~~spd~~~la 483 (577)
T 2ymu_A 406 DKTVKLWNRN-GQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIA 483 (577)
T ss_dssp TSEEEEECTT-CCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEET-TSCEEEEEECCSSCEEEEEECTTSCEEE
T ss_pred CCEEEEEeCC-CCEEEEecCCCCCeEEEEECCCCCEEEEEcCCCEEEEEEC-CCCEEEEEcCCCCCEEEEEEcCCCCEEE
Confidence 9999999965 55555554 4678999999999999999999999999996 4677888899999999999999999999
Q ss_pred EEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEEEeccCCCCeeEEEEeC
Q 003236 741 SVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSAHDKLVSSLAAST 819 (837)
Q Consensus 741 sgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fspdg~~L~sgs~dg~I~IwDl~s~~~~~l~~h~~~V~sla~sp 819 (837)
+++ |+.|+|||.. + .++..+..|...|++++|+|++++|++++.|+.|+|||.....+..+.+|.+.|++++|+|
T Consensus 484 s~~~d~~i~iw~~~-~---~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~v~lwd~~~~~~~~~~~h~~~v~~~~fs~ 559 (577)
T 2ymu_A 484 SASDDKTVKLWNRN-G---QLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSP 559 (577)
T ss_dssp EEETTSEEEEEETT-S---CEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECTTSCEEEEEECCSSCEEEEEECT
T ss_pred EEeCCCEEEEEcCC-C---CEEEEEeCCCCCEEEEEEcCCCCEEEEEECcCEEEEEeCCCCEEEEEcCCCCCEEEEEEcC
Confidence 998 9999999953 3 6788899999999999999999999999999999999975544448889999999999999
Q ss_pred CCCEEEEEECCCcEEEeC
Q 003236 820 VNGMVASASHDKCVKIWK 837 (837)
Q Consensus 820 dg~~LaSgs~DG~I~IWd 837 (837)
|+++|+|++.||+|+|||
T Consensus 560 dg~~l~s~~~D~~i~~Wd 577 (577)
T 2ymu_A 560 DGQTIASASSDKTVKLWN 577 (577)
T ss_dssp TSSCEEEEETTSCEEEEC
T ss_pred CCCEEEEEeCCCEEEEeC
Confidence 999999999999999998
|
| >4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-38 Score=349.74 Aligned_cols=279 Identities=15% Similarity=0.210 Sum_probs=235.7
Q ss_pred CCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCC-----------CeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeE
Q 003236 553 ASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES-----------FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTV 621 (837)
Q Consensus 553 ~H~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t-----------~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I 621 (837)
.|...|.+++|+|||++|++++ |+++++||... .........|...|.+++|+|++ .|++|+.||+|
T Consensus 28 ~~~~~v~~~~fs~dG~~l~~~s-d~~~r~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~-~l~~~s~dg~v 105 (344)
T 4gqb_B 28 CMERQLEAARYRSDGALLLGAS-SLSGRCWAGSLWLFKDPCAAPNEGFCSAGVQTEAGVADLTWVGER-GILVASDSGAV 105 (344)
T ss_dssp SCCSEEEEEEECTTSCEEEEEE-CCSSSCCCEEEEEESSGGGTTCGGGCSEEEEESSCEEEEEEETTT-EEEEEETTSEE
T ss_pred cccCCEEEEEECCCCCEEEEEe-CCceEEeeceeeeeccccccCCcceeeeeeccCCCEEEEEEeCCC-eEEEEECCCEE
Confidence 4667799999999999999887 77888886321 01111122356789999999984 78899999999
Q ss_pred EEEEcCCCCcee---EEeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeeEEec-CCCeeEEEEecCCC-E
Q 003236 622 RVWDTENPDYSL---RTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLG-R 696 (837)
Q Consensus 622 ~IWDl~~~~~~~---~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~-~~~i~sl~~sp~g~-~ 696 (837)
+|||+.+++... ....+|...|.+++|+|++. +|++|+.|++|++||+++++++..+.. ...|.+++|++++. .
T Consensus 106 ~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~-~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~ 184 (344)
T 4gqb_B 106 ELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGT-QAVSGSKDICIKVWDLAQQVVLSSYRAHAAQVTCVAASPHKDSV 184 (344)
T ss_dssp EEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSS-EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSSCTTE
T ss_pred EEEeccCCCceeEeeccccCCCCCEEEEEECCCCC-EEEEEeCCCeEEEEECCCCcEEEEEcCcCCceEEEEecCCCCCc
Confidence 999999876432 23558999999999999976 667999999999999999999998874 67799999999875 6
Q ss_pred EEEEEcCCeEEEEECCCCeEEEEEc--CCCCCEEEEEEcCC-CCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceE
Q 003236 697 ILAAAIENYISILDVETQVCRLKLQ--GHKNQVHSVCWNTS-GEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFH 772 (837)
Q Consensus 697 llags~dg~I~iwDl~s~~~~~~l~--~h~~~V~sl~~spd-g~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~ 772 (837)
+++++.|+.|++||++++++...+. .|...+.+++|+|+ +.+|++++ |+.|+|||++++ +++..+..|...|+
T Consensus 185 l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~---~~~~~~~~h~~~v~ 261 (344)
T 4gqb_B 185 FLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKST---SCVLSSAVHSQCVT 261 (344)
T ss_dssp EEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC-----CCEEEECCSSCEE
T ss_pred eeeeccccccccccccccceeeeeecceeeccceeeeecCCCCcceEEeccCCcEEEEECCCC---cEEEEEcCCCCCEE
Confidence 7889999999999999998877764 35668999999985 56888888 999999999987 67888999999999
Q ss_pred EEEEeCCC-CEEEEEEcCCeEEEEECCCCcEEEeccCCCCeeEEEEeCCCC-EEEEEECCCcEEEeC
Q 003236 773 SCVFHPTF-PSLLVIGCYETLELWNMTENKTLTLSAHDKLVSSLAASTVNG-MVASASHDKCVKIWK 837 (837)
Q Consensus 773 sv~fspdg-~~L~sgs~dg~I~IwDl~s~~~~~l~~h~~~V~sla~spdg~-~LaSgs~DG~I~IWd 837 (837)
+++|+|++ .+|++++.|++|+|||+.+++++.+.+|.+.|++++|+|++. +|++|+.||+|++|+
T Consensus 262 ~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~~~~~H~~~V~~v~~sp~~~~llas~s~D~~v~~w~ 328 (344)
T 4gqb_B 262 GLVFSPHSVPFLASLSEDCSLAVLDSSLSELFRSQAHRDFVRDATWSPLNHSLLTTVGWDHQVVHHV 328 (344)
T ss_dssp EEEECSSSSCCEEEEETTSCEEEECTTCCEEEEECCCSSCEEEEEECSSSTTEEEEEETTSCEEEEE
T ss_pred EEEEccCCCeEEEEEeCCCeEEEEECCCCcEEEEcCCCCCEEEEEEeCCCCeEEEEEcCCCeEEEEE
Confidence 99999998 578899999999999999999999999999999999999986 678999999999995
|
| >2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-37 Score=341.31 Aligned_cols=289 Identities=21% Similarity=0.331 Sum_probs=237.6
Q ss_pred eeEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCC--eEEEEe-cc-CCCCeEEEEEcCCCCEEEEEeCCCe
Q 003236 545 FTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESF--TVKSTL-EE-HTQWITDVRFSPSLSRLATSSADRT 620 (837)
Q Consensus 545 ~~~~~~l~~H~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~--~~~~~l-~~-h~~~I~~l~fspdg~~Latgs~Dg~ 620 (837)
+..+..+.+|.+.|++++|+++ +||+|+.|++|+|||+.++ ..+..+ .. |...|.+++|+|++++|++++.|++
T Consensus 4 ~~~~~~~~~h~~~v~~~~~s~~--~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~ 81 (330)
T 2hes_X 4 INLIKSLKLYKEKIWSFDFSQG--ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDST 81 (330)
T ss_dssp CEEEEEEECCSSCEEEEEEETT--EEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSEEEEEETTSC
T ss_pred cccceeeccCCCceeeeccCCC--EEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCCEEEEEeCCCc
Confidence 3457788999999999999988 9999999999999999874 455666 44 9999999999999999999999999
Q ss_pred EEEEEcCCC------CceeEEeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCC----eeeeEEe-cCCCeeEEE
Q 003236 621 VRVWDTENP------DYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNG----SCAGVFK-CQSGATQMR 689 (837)
Q Consensus 621 I~IWDl~~~------~~~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~----~~i~~~~-~~~~i~sl~ 689 (837)
|+|||+... ...+..+.+|...|.+++|+|++. +|++|+.|+.|++||++.. +++..+. +...|.+++
T Consensus 82 v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~-~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~ 160 (330)
T 2hes_X 82 VSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGY-YLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVI 160 (330)
T ss_dssp EEEEEC-------CCCEEEEEEC----CEEEEEECTTSC-EEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSCEEEEE
T ss_pred EEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCC-EEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCceEEEE
Confidence 999998642 124567889999999999999976 6779999999999999532 4555554 456799999
Q ss_pred EecCCCEEEEEEcCCeEEEEECCCC--eEEEEEcCCCCCEEEEEEcCC--CCEEEEEe-CCeEEEEEcCCCCCc-----e
Q 003236 690 FQPRLGRILAAAIENYISILDVETQ--VCRLKLQGHKNQVHSVCWNTS--GEYLASVS-DELVRVWSIGSGSKG-----E 759 (837)
Q Consensus 690 ~sp~g~~llags~dg~I~iwDl~s~--~~~~~l~~h~~~V~sl~~spd--g~~Lasgs-Dg~I~IwDl~s~~~~-----~ 759 (837)
|+|++.+|++++.|+.|++||..++ +++..+.+|...|.+++|+|+ +.+|++++ |++|+|||+..+... .
T Consensus 161 ~~p~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~ 240 (330)
T 2hes_X 161 WHPSEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWV 240 (330)
T ss_dssp ECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEECTTSCEEEE
T ss_pred ECCCCCEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCCCccccceeE
Confidence 9999999999999999999999876 678889999999999999998 67899988 999999999754211 2
Q ss_pred eEEEeec-CCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcE--E-E-eccCCC-CeeEEEEeC--CCCEEEEEECCC
Q 003236 760 CIHELSC-TGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKT--L-T-LSAHDK-LVSSLAAST--VNGMVASASHDK 831 (837)
Q Consensus 760 ~i~~~~~-~~~~I~sv~fspdg~~L~sgs~dg~I~IwDl~s~~~--~-~-l~~h~~-~V~sla~sp--dg~~LaSgs~DG 831 (837)
+...+.. |...|.+++|++++ .|++++.|+.|+|||..+++. . . ...|.. .|.+++|+| ++.+||+|+.||
T Consensus 241 ~~~~~~~~h~~~v~~v~~s~~~-~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~h~~~~v~~v~~~~~~~~~~las~s~Dg 319 (330)
T 2hes_X 241 CEAILPDVHKRQVYNVAWGFNG-LIASVGADGVLAVYEEVDGEWKVFAKRALCHGVYEINVVKWLELNGKTILATGGDDG 319 (330)
T ss_dssp EEEECCSCCSSCEEEEEECTTS-CEEEEETTSCEEEEEEETTEEEEEEEESCTTTTSCEEEEEEC-----CCEEEEETTS
T ss_pred EeeecccccccceEEEEEcCCC-EEEEEeCCCEEEEEEcCCCceEEEeccccccccceEEEEEEecCCCceEEEEecCCC
Confidence 3444444 78899999999765 799999999999999988742 3 2 357877 899999999 688999999999
Q ss_pred cEEEeC
Q 003236 832 CVKIWK 837 (837)
Q Consensus 832 ~I~IWd 837 (837)
+|+|||
T Consensus 320 ~v~~W~ 325 (330)
T 2hes_X 320 IVNFWS 325 (330)
T ss_dssp EEEEEE
T ss_pred cEEEEE
Confidence 999996
|
| >4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-38 Score=352.19 Aligned_cols=281 Identities=13% Similarity=0.165 Sum_probs=236.9
Q ss_pred cCCCCCeEEEEEcCCCCEEEEEEC------CCcEEEEeCCCCeEE----EEeccCCCCeEEEEEcCCCCEEEEEeCCCeE
Q 003236 552 PASTSKVESCHFSPDGKLLATGGH------DKKAVLWCTESFTVK----STLEEHTQWITDVRFSPSLSRLATSSADRTV 621 (837)
Q Consensus 552 ~~H~~~V~sl~fSpdg~~Lasgs~------Dg~I~VWd~~t~~~~----~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I 621 (837)
..|...|++|+|||||++||+|+. |+.|++|+..++... .....|...|++++|+|++. +++++.||+|
T Consensus 39 ~~H~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~d~~-~l~~s~dg~v 117 (357)
T 4g56_B 39 ACMEVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNESLCTAGVQTEAGVTDVAWVSEKG-ILVASDSGAV 117 (357)
T ss_dssp -CCCSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---CGGGCSEEEECSSCEEEEEEETTTE-EEEEETTSCE
T ss_pred ccccCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCcceeEecccCCCCCCEEEEEEcCCCC-EEEEECCCEE
Confidence 479999999999999999999997 778999998776543 23346889999999999975 5677899999
Q ss_pred EEEEcCCCCcee---EEeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeeEEec-CCCeeEEEEecCCC-E
Q 003236 622 RVWDTENPDYSL---RTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLG-R 696 (837)
Q Consensus 622 ~IWDl~~~~~~~---~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~-~~~i~sl~~sp~g~-~ 696 (837)
+|||+.+++... ....+|...|.+++|+|++. +|++++.|+.|++||+++++++..+.. ...|.+++|++++. .
T Consensus 118 ~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~-~l~sgs~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~~ 196 (357)
T 4g56_B 118 ELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGT-QAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTI 196 (357)
T ss_dssp EEC--------CCCCEEECCCSSCEEEEEECSSSS-EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTCSSC
T ss_pred EEeeccccceeEEEeeccCCCCCCEEEEEECCCCC-EEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCce
Confidence 999998765322 34457999999999999976 566999999999999999999988875 56799999999875 6
Q ss_pred EEEEEcCCeEEEEECCCCeEEEEE--cCCCCCEEEEEEcCCC-CEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceE
Q 003236 697 ILAAAIENYISILDVETQVCRLKL--QGHKNQVHSVCWNTSG-EYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFH 772 (837)
Q Consensus 697 llags~dg~I~iwDl~s~~~~~~l--~~h~~~V~sl~~spdg-~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~ 772 (837)
+++++.|+.|++||+++++++..+ ..|...|++++|+|++ .+|++++ |+.|++||++++ .++..+..|...|.
T Consensus 197 ~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~---~~~~~~~~~~~~v~ 273 (357)
T 4g56_B 197 FLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNP---DSAQTSAVHSQNIT 273 (357)
T ss_dssp EEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCG---GGCEEECCCSSCEE
T ss_pred eeeeccCCceEEEECCCCceeeeeeeccccccccchhhhhcccceEEEeecccceeEEECCCC---cEeEEEeccceeEE
Confidence 888999999999999998766554 3467789999999974 6788887 999999999987 67788889999999
Q ss_pred EEEEeCCC-CEEEEEEcCCeEEEEECCCCcEEEeccCCCCeeEEEEeC-CCCEEEEEECCCcEEEeC
Q 003236 773 SCVFHPTF-PSLLVIGCYETLELWNMTENKTLTLSAHDKLVSSLAAST-VNGMVASASHDKCVKIWK 837 (837)
Q Consensus 773 sv~fspdg-~~L~sgs~dg~I~IwDl~s~~~~~l~~h~~~V~sla~sp-dg~~LaSgs~DG~I~IWd 837 (837)
+++|+|++ .+|++++.|++|+|||+.+++++...+|.+.|++|+|+| ++.+|++|+.||+|+|||
T Consensus 274 ~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~~~~~~H~~~V~~vafsP~d~~~l~s~s~Dg~v~iW~ 340 (357)
T 4g56_B 274 GLAYSYHSSPFLASISEDCTVAVLDADFSEVFRDLSHRDFVTGVAWSPLDHSKFTTVGWDHKVLHHH 340 (357)
T ss_dssp EEEECSSSSCCEEEEETTSCEEEECTTSCEEEEECCCSSCEEEEEECSSSTTEEEEEETTSCEEEEE
T ss_pred EEEEcCCCCCEEEEEeCCCEEEEEECCCCcEeEECCCCCCEEEEEEeCCCCCEEEEEcCCCeEEEEE
Confidence 99999987 578899999999999999999998889999999999998 789999999999999996
|
| >3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.4e-37 Score=335.33 Aligned_cols=284 Identities=17% Similarity=0.246 Sum_probs=254.3
Q ss_pred EEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEc
Q 003236 547 EFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDT 626 (837)
Q Consensus 547 ~~~~l~~H~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl 626 (837)
....+.+|.+.|++++|+|++++|++|+.||.|+|||+.+++.+..+.+|...|.+++|+|++++|++++.||.|++||+
T Consensus 24 ~~~~l~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~ 103 (369)
T 3zwl_B 24 KAIKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWDV 103 (369)
T ss_dssp EEEEEECCSSCEEEEEECTTSCEEEEEESSSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEET
T ss_pred ccEEEEEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchhhhhhhhcCCcEEEEEEcCCCCEEEEEeCCCeEEEEEC
Confidence 45668899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCceeEEeeccccceEEEEEcCCCCeEEEEEeCC-----CcEEEEECCCCeee-----------eEEe-cCC--CeeE
Q 003236 627 ENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN-----SEIRYWSINNGSCA-----------GVFK-CQS--GATQ 687 (837)
Q Consensus 627 ~~~~~~~~~~~~h~~~V~sl~fspdg~~llasgs~D-----g~I~vwDl~t~~~i-----------~~~~-~~~--~i~s 687 (837)
.+++. +..+. +...|.+++|+|++.. +++++.+ +.|++||+...... ..+. +.. .+.+
T Consensus 104 ~~~~~-~~~~~-~~~~v~~~~~~~~~~~-l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (369)
T 3zwl_B 104 SNGQC-VATWK-SPVPVKRVEFSPCGNY-FLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATV 180 (369)
T ss_dssp TTCCE-EEEEE-CSSCEEEEEECTTSSE-EEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEE
T ss_pred CCCcE-EEEee-cCCCeEEEEEccCCCE-EEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccceeE
Confidence 98764 55555 8899999999999875 4566667 99999999765422 1222 122 7999
Q ss_pred EEEecCCCEEEEEEcCCeEEEEECCC-CeEEEEEcCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEee
Q 003236 688 MRFQPRLGRILAAAIENYISILDVET-QVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELS 765 (837)
Q Consensus 688 l~~sp~g~~llags~dg~I~iwDl~s-~~~~~~l~~h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~ 765 (837)
++|+|++..+++++.|+.|++||+++ ...+..+..|...|.+++|+|++.+|++++ |+.|++||++++ ..+..+.
T Consensus 181 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~---~~~~~~~ 257 (369)
T 3zwl_B 181 AGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTL---QVLKKYE 257 (369)
T ss_dssp EEECGGGCEEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTC---CEEEEEE
T ss_pred EEEcCCCCEEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEEEECCCCCEEEEecCCceEEEEECCCC---ceeeeec
Confidence 99999999999999999999999999 788999999999999999999999999998 999999999987 5555555
Q ss_pred cCCCceEEEEEeCCCCEEEEEEcCC--------------eEEEEECCCCcEE-EeccCCCCeeEEEEeCCCCEEEEEECC
Q 003236 766 CTGNKFHSCVFHPTFPSLLVIGCYE--------------TLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHD 830 (837)
Q Consensus 766 ~~~~~I~sv~fspdg~~L~sgs~dg--------------~I~IwDl~s~~~~-~l~~h~~~V~sla~spdg~~LaSgs~D 830 (837)
+...+..++|+|++.++++++.++ .|++||+.+++.+ .+.+|...|++++|+|++++|++++.|
T Consensus 258 -~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d 336 (369)
T 3zwl_B 258 -TDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQGHFGPLNTVAISPQGTSYASGGED 336 (369)
T ss_dssp -CSSCEEEEEECSSSSEEEEEECCC-------------CEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETT
T ss_pred -CCCCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcchhheecccCcEEEEEECCCCCEEEEEcCC
Confidence 678899999999999999999988 8999999999887 677899999999999999999999999
Q ss_pred CcEEEeC
Q 003236 831 KCVKIWK 837 (837)
Q Consensus 831 G~I~IWd 837 (837)
|.|+|||
T Consensus 337 g~v~iw~ 343 (369)
T 3zwl_B 337 GFIRLHH 343 (369)
T ss_dssp SEEEEEE
T ss_pred CeEEEEE
Confidence 9999996
|
| >3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=8e-37 Score=334.07 Aligned_cols=271 Identities=20% Similarity=0.291 Sum_probs=248.5
Q ss_pred CCeEEcccCCCceEEeecCCCCCCCCccccccccCCCeeeeEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCC
Q 003236 506 DRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTE 585 (837)
Q Consensus 506 ~~~v~~Gs~D~~v~~w~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~H~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~ 585 (837)
..++++|+.|++|++|..... .......+.+|...|.+++|++++.++++++.|++|+|||+.
T Consensus 48 ~~~l~tgs~D~~v~vW~~~~~-----------------~~~~~~~l~gh~~~v~~~~~~~~~~~l~s~s~D~~i~lWd~~ 110 (321)
T 3ow8_A 48 SETVVTGSLDDLVKVWKWRDE-----------------RLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLE 110 (321)
T ss_dssp -CEEEEEETTSCEEEEEEETT-----------------EEEEEEEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEETT
T ss_pred CCEEEEEcCCCCEEEEECCCC-----------------CeeeeeeeccCCCCEEEEEECCCCCEEEEEeCCCcEEEEECC
Confidence 468999999999999965322 123345688999999999999999999999999999999999
Q ss_pred CCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeEEeeccccceEEEEEcCCCCeEEEEEeCCCcE
Q 003236 586 SFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEI 665 (837)
Q Consensus 586 t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I 665 (837)
+++.+..+..|...+.+++|+|++++|++++.|+.|++||+.++.. ...+..|...|.+++|+|++. +|++++.|+.|
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~~-~~~~~~~~~~v~~~~~spdg~-~lasg~~dg~i 188 (321)
T 3ow8_A 111 NGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKK-EYSLDTRGKFILSIAYSPDGK-YLASGAIDGII 188 (321)
T ss_dssp TTEEEEEEECCTTCCCCEEECTTSSEEEEECTTSEEEEEETTTCSE-EEEEECSSSCEEEEEECTTSS-EEEEEETTSCE
T ss_pred CCCEEEEEeCCCccEEEEEECCCCCEEEEEcCCCcEEEEEcCCCce-eEEecCCCceEEEEEECCCCC-EEEEEcCCCeE
Confidence 9999999999999999999999999999999999999999998764 667788899999999999977 66689999999
Q ss_pred EEEECCCCeeeeEEec-CCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEe-
Q 003236 666 RYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS- 743 (837)
Q Consensus 666 ~vwDl~t~~~i~~~~~-~~~i~sl~~sp~g~~llags~dg~I~iwDl~s~~~~~~l~~h~~~V~sl~~spdg~~Lasgs- 743 (837)
++||+++++++..+.. ...|.+++|+|++.+|++++.|+.|++||++++..+..+.+|...|.+++|+|++.+|++++
T Consensus 189 ~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~ 268 (321)
T 3ow8_A 189 NIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPDDTHFVSSSS 268 (321)
T ss_dssp EEEETTTTEEEEEECCCSSCCCEEEECTTSCEEEEECTTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEET
T ss_pred EEEECCCCcEEEEEcccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCcceeEEEcCCCCceEEEEECCCCCEEEEEeC
Confidence 9999999999888874 56799999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECC
Q 003236 744 DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMT 798 (837)
Q Consensus 744 Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fspdg~~L~sgs~dg~I~IwDl~ 798 (837)
|+.|+|||+.++ .++..+..|...|.+++|+|++.+|++++.|+.|+|||+.
T Consensus 269 D~~v~iwd~~~~---~~~~~~~~h~~~v~~v~~s~~g~~l~s~~~d~~i~vwd~p 320 (321)
T 3ow8_A 269 DKSVKVWDVGTR---TCVHTFFDHQDQVWGVKYNGNGSKIVSVGDDQEIHIYDCP 320 (321)
T ss_dssp TSCEEEEETTTT---EEEEEECCCSSCEEEEEECTTSSEEEEEETTCCEEEEECC
T ss_pred CCcEEEEeCCCC---EEEEEEcCCCCcEEEEEECCCCCEEEEEeCCCeEEEEeCC
Confidence 999999999987 8889999999999999999999999999999999999963
|
| >2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-36 Score=353.79 Aligned_cols=306 Identities=26% Similarity=0.445 Sum_probs=270.4
Q ss_pred cccCCCeEEcccCCCceEEeecCCCCCCCCccccccccCCCeeeeEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEE
Q 003236 502 LTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVL 581 (837)
Q Consensus 502 l~~~~~~v~~Gs~D~~v~~w~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~H~~~V~sl~fSpdg~~Lasgs~Dg~I~V 581 (837)
+.+...++++++.|+.+++|.... ..+..+.+|...|++++|+|++++|++++.|+.|++
T Consensus 229 ~s~dg~~l~~~~~d~~i~~w~~~~--------------------~~~~~~~~~~~~v~~v~~~~d~~~l~~~~~d~~i~~ 288 (577)
T 2ymu_A 229 FSPDGQTIASASDDKTVKLWNRNG--------------------QLLQTLTGHSSSVNGVAFRPDGQTIASASDDKTVKL 288 (577)
T ss_dssp ECTTSSCEEEEETTSCEEEECTTS--------------------CEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEE
T ss_pred ECCCCCEEEEEeCCCEEEEEeCCC--------------------CEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCEEEE
Confidence 344556788899999999994311 245677899999999999999999999999999999
Q ss_pred EeCCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeEEeeccccceEEEEEcCCCCeEEEEEeC
Q 003236 582 WCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDN 661 (837)
Q Consensus 582 Wd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~sl~fspdg~~llasgs~ 661 (837)
||. +++....+.+|...|.+++|+|++.+|++++.|++|++||+... .+..+.+|...|.+++|+|++. ++++++.
T Consensus 289 w~~-~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~~~--~~~~~~~~~~~v~~~~~s~~g~-~l~~~~~ 364 (577)
T 2ymu_A 289 WNR-NGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQ--HLQTLTGHSSSVWGVAFSPDGQ-TIASASD 364 (577)
T ss_dssp EET-TSCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTSC--EEEEECCCSSCEEEEEECTTSS-EEEEEET
T ss_pred EeC-CCcEEEEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCC--eeEEEeCCCCCEEEEEECCCCC-EEEEEeC
Confidence 996 46778889999999999999999999999999999999998753 3677889999999999999977 5668999
Q ss_pred CCcEEEEECCCCeeeeEEe-cCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEcCCCCEEE
Q 003236 662 NSEIRYWSINNGSCAGVFK-CQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLA 740 (837)
Q Consensus 662 Dg~I~vwDl~t~~~i~~~~-~~~~i~sl~~sp~g~~llags~dg~I~iwDl~s~~~~~~l~~h~~~V~sl~~spdg~~La 740 (837)
|+.|++||.. ++.+..+. +...|.+++|+|++.+|++++.|+.|++||. +++.+..+.+|...|++++|+|++++|+
T Consensus 365 dg~v~~~~~~-~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~d~~~l~ 442 (577)
T 2ymu_A 365 DKTVKLWNRN-GQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDDQTIA 442 (577)
T ss_dssp TSEEEEEETT-CCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECT-TCCEEEEEECCSSCEEEEEECTTSSEEE
T ss_pred CCEEEEEcCC-CCEEEEecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEeC-CCCEEEEecCCCCCeEEEEECCCCCEEE
Confidence 9999999965 55666555 4677999999999999999999999999995 5677888899999999999999999999
Q ss_pred EEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEEEeccCCCCeeEEEEeC
Q 003236 741 SVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSAHDKLVSSLAAST 819 (837)
Q Consensus 741 sgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fspdg~~L~sgs~dg~I~IwDl~s~~~~~l~~h~~~V~sla~sp 819 (837)
+++ |+.|++||+.. ..+..+..|...|.+++|+|++++|++++.|+.|++||........+.+|...|++++|+|
T Consensus 443 ~~~~d~~v~~w~~~~----~~~~~~~~~~~~v~~~~~spd~~~las~~~d~~i~iw~~~~~~~~~~~~h~~~v~~l~~s~ 518 (577)
T 2ymu_A 443 SASDDKTVKLWNRNG----QLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSP 518 (577)
T ss_dssp EEETTSEEEEEETTS----CEEEEEECCSSCEEEEEECTTSCEEEEEETTSEEEEEETTSCEEEEEECCSSCEEEEEECT
T ss_pred EEcCCCEEEEEECCC----CEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEEcCCCCEEEEEeCCCCCEEEEEEcC
Confidence 999 99999999643 5778888999999999999999999999999999999975544458889999999999999
Q ss_pred CCCEEEEEECCCcEEEeC
Q 003236 820 VNGMVASASHDKCVKIWK 837 (837)
Q Consensus 820 dg~~LaSgs~DG~I~IWd 837 (837)
++++||+++.||.|+|||
T Consensus 519 dg~~l~s~~~dg~v~lwd 536 (577)
T 2ymu_A 519 DGQTIASASDDKTVKLWN 536 (577)
T ss_dssp TSSCEEEEETTSEEEEEC
T ss_pred CCCEEEEEECcCEEEEEe
Confidence 999999999999999997
|
| >1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-36 Score=328.02 Aligned_cols=280 Identities=18% Similarity=0.246 Sum_probs=251.1
Q ss_pred ecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEE---EEe--ccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEE
Q 003236 551 IPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVK---STL--EEHTQWITDVRFSPSLSRLATSSADRTVRVWD 625 (837)
Q Consensus 551 l~~H~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~~---~~l--~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWD 625 (837)
..+|.+.|++++|+|++++|++++ ||.|++||+.++... ..+ ..|...|.+++|+|++++|++++.|+.|++||
T Consensus 47 ~~~h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d 125 (337)
T 1gxr_A 47 TLNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWD 125 (337)
T ss_dssp EECCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEE
T ss_pred eccCCCceEEEEEecCCcEEEEcC-CCeEEEEECCCCCceeeeecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEE
Confidence 348999999999999999999998 999999999875432 333 27999999999999999999999999999999
Q ss_pred cCCCCc-eeEEeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeeEEec-CCCeeEEEEecCCCEEEEEEcC
Q 003236 626 TENPDY-SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAIE 703 (837)
Q Consensus 626 l~~~~~-~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~-~~~i~sl~~sp~g~~llags~d 703 (837)
+.+++. ....+..|...|.+++|+|++. ++++++.|+.|++||+++++.+..+.. ...+.+++|+|++..+++++.|
T Consensus 126 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d 204 (337)
T 1gxr_A 126 LAAPTPRIKAELTSSAPACYALAISPDSK-VCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLD 204 (337)
T ss_dssp CCCC--EEEEEEECSSSCEEEEEECTTSS-EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETT
T ss_pred CCCCCcceeeecccCCCceEEEEECCCCC-EEEEEeCCCcEEEEeCCCCceeeeeecccCceEEEEECCCCCEEEEEecC
Confidence 998653 3566788999999999999876 566888999999999999998888874 6679999999999999999999
Q ss_pred CeEEEEECCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCE
Q 003236 704 NYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPS 782 (837)
Q Consensus 704 g~I~iwDl~s~~~~~~l~~h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fspdg~~ 782 (837)
+.|++||+++++.+..+. +...+.+++|+|++.+|++++ |+.|++||+++.. ...+..|...+.+++|+|++++
T Consensus 205 g~i~~~d~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~----~~~~~~~~~~v~~~~~~~~~~~ 279 (337)
T 1gxr_A 205 NTVRSWDLREGRQLQQHD-FTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPD----KYQLHLHESCVLSLKFAYCGKW 279 (337)
T ss_dssp SEEEEEETTTTEEEEEEE-CSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSC----EEEECCCSSCEEEEEECTTSSE
T ss_pred CcEEEEECCCCceEeeec-CCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCC----eEEEcCCccceeEEEECCCCCE
Confidence 999999999998888775 788999999999999999998 9999999998863 3456778899999999999999
Q ss_pred EEEEEcCCeEEEEECCCCcEEEeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 003236 783 LLVIGCYETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 837 (837)
Q Consensus 783 L~sgs~dg~I~IwDl~s~~~~~l~~h~~~V~sla~spdg~~LaSgs~DG~I~IWd 837 (837)
|++++.|+.|++||+.+++.+....|...|.+++|+|++++|++++.||.|+|||
T Consensus 280 l~~~~~dg~i~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~ 334 (337)
T 1gxr_A 280 FVSTGKDNLLNAWRTPYGASIFQSKESSSVLSCDISVDDKYIVTGSGDKKATVYE 334 (337)
T ss_dssp EEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECTTSCEEEEEETTSCEEEEE
T ss_pred EEEecCCCcEEEEECCCCeEEEEecCCCcEEEEEECCCCCEEEEecCCCeEEEEE
Confidence 9999999999999999999887778999999999999999999999999999996
|
| >1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-37 Score=348.19 Aligned_cols=268 Identities=24% Similarity=0.455 Sum_probs=245.5
Q ss_pred CeEEcccCCCceEEeecCCCCCCCCccccccccCCCeeeeEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCC
Q 003236 507 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES 586 (837)
Q Consensus 507 ~~v~~Gs~D~~v~~w~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~H~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t 586 (837)
.++++|+.|++|++|..... .....+.+|.+.|++++|+|++++|++|+.|++|+|||+.+
T Consensus 121 ~~l~s~s~Dg~i~vwd~~~~-------------------~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~ 181 (410)
T 1vyh_C 121 SVMVSASEDATIKVWDYETG-------------------DFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQG 181 (410)
T ss_dssp SEEEEEESSSCEEEEETTTC-------------------CCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTS
T ss_pred CEEEEEeCCCeEEEEECCCC-------------------cEEEEEeccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCC
Confidence 68999999999999976433 12456789999999999999999999999999999999999
Q ss_pred CeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeEEeeccccceEEEEEcCCCCeEEEEEeCCCcEE
Q 003236 587 FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIR 666 (837)
Q Consensus 587 ~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~ 666 (837)
++++..+.+|...|.+++|+|++.+|++|+.|++|++||+.++. ++..+.+|...|.++.|++++. ++++|+.|+.|+
T Consensus 182 ~~~~~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~-~~~~~~~h~~~v~~~~~~~~g~-~l~s~s~D~~v~ 259 (410)
T 1vyh_C 182 FECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGY-CVKTFTGHREWVRMVRPNQDGT-LIASCSNDQTVR 259 (410)
T ss_dssp SCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCC-EEEEEECCSSCEEEEEECTTSS-EEEEEETTSCEE
T ss_pred CceeEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCc-EEEEEeCCCccEEEEEECCCCC-EEEEEcCCCeEE
Confidence 99999999999999999999999999999999999999999866 4788899999999999999976 677999999999
Q ss_pred EEECCCCeeeeEEec-CCCeeEEEEecC--------------------CCEEEEEEcCCeEEEEECCCCeEEEEEcCCCC
Q 003236 667 YWSINNGSCAGVFKC-QSGATQMRFQPR--------------------LGRILAAAIENYISILDVETQVCRLKLQGHKN 725 (837)
Q Consensus 667 vwDl~t~~~i~~~~~-~~~i~sl~~sp~--------------------g~~llags~dg~I~iwDl~s~~~~~~l~~h~~ 725 (837)
+||+.++++...+.. ...|.+++|+|+ +.++++++.|+.|++||++++.++..+.+|..
T Consensus 260 vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~ 339 (410)
T 1vyh_C 260 VWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDN 339 (410)
T ss_dssp EEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEEECCSS
T ss_pred EEECCCCceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCCceEEEEECCCC
Confidence 999999998887754 567999999996 66899999999999999999999999999999
Q ss_pred CEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECC
Q 003236 726 QVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMT 798 (837)
Q Consensus 726 ~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fspdg~~L~sgs~dg~I~IwDl~ 798 (837)
.|++++|+|++.+|++++ |+.|+|||+.++ .++..+..|...|++++|+|++.+|++++.|+.|+||+++
T Consensus 340 ~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~---~~~~~~~~h~~~v~~l~~~~~~~~l~sgs~D~~i~vW~~r 410 (410)
T 1vyh_C 340 WVRGVLFHSGGKFILSCADDKTLRVWDYKNK---RCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWECR 410 (410)
T ss_dssp CEEEEEECSSSSCEEEEETTTEEEEECCTTS---CCCEEEECCSSCEEEEEECSSSSCEEEEETTSEEEEEC--
T ss_pred cEEEEEEcCCCCEEEEEeCCCeEEEEECCCC---ceEEEEcCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEeCC
Confidence 999999999999999999 999999999877 6778888999999999999999999999999999999863
|
| >4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a | Back alignment and structure |
|---|
Probab=100.00 E-value=4.2e-36 Score=326.26 Aligned_cols=287 Identities=19% Similarity=0.341 Sum_probs=246.9
Q ss_pred eeeEEEEecCCCCCeEEEEEcCC-CCEEEEEECCCcEEEEeCCCC-----eEEEEeccCCCCeEEEEEcCCCCEEEEEeC
Q 003236 544 TFTEFQLIPASTSKVESCHFSPD-GKLLATGGHDKKAVLWCTESF-----TVKSTLEEHTQWITDVRFSPSLSRLATSSA 617 (837)
Q Consensus 544 ~~~~~~~l~~H~~~V~sl~fSpd-g~~Lasgs~Dg~I~VWd~~t~-----~~~~~l~~h~~~I~~l~fspdg~~Latgs~ 617 (837)
.+....+|++|.+.|++|+|+|+ +++||||+.|++|+|||+.+. .+...+.+|...|.+++|+|++++|++++.
T Consensus 27 ~~~l~~tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~~~ 106 (340)
T 4aow_A 27 QMTLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSW 106 (340)
T ss_dssp EEEEEEEECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSSEEEEEET
T ss_pred ceEEEEEECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCCEEEEEcc
Confidence 44556689999999999999997 689999999999999998753 356788999999999999999999999999
Q ss_pred CCeEEEEEcCCCCceeEEeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeeEEe--cCCCeeEEEEecCC-
Q 003236 618 DRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK--CQSGATQMRFQPRL- 694 (837)
Q Consensus 618 Dg~I~IWDl~~~~~~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~--~~~~i~sl~~sp~g- 694 (837)
|+.|++|+..... .......+...+..+.+++++. ++++++.|+.+++||+.......... +...+.+++|++++
T Consensus 107 d~~i~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 184 (340)
T 4aow_A 107 DGTLRLWDLTTGT-TTRRFVGHTKDVLSVAFSSDNR-QIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSS 184 (340)
T ss_dssp TSEEEEEETTTTE-EEEEEECCSSCEEEEEECTTSS-CEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSCSS
T ss_pred cccceEEeecccc-eeeeecCCCCceeEEEEeecCc-cceeecCCCeEEEEEeCCCceEEEEeccccCcccceEEccCCC
Confidence 9999999999755 3666677888899999999876 55689999999999998765443322 35678899998764
Q ss_pred -CEEEEEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceE
Q 003236 695 -GRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFH 772 (837)
Q Consensus 695 -~~llags~dg~I~iwDl~s~~~~~~l~~h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~ 772 (837)
..+++++.|+.|++||+++++.+..+.+|...|++++|+|++++|++++ |+.|++||+++. ..+..+.. ...+.
T Consensus 185 ~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~---~~~~~~~~-~~~v~ 260 (340)
T 4aow_A 185 NPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEG---KHLYTLDG-GDIIN 260 (340)
T ss_dssp SCEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCEEEEEETTTT---EEEEEEEC-SSCEE
T ss_pred CcEEEEEcCCCEEEEEECCCCceeeEecCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEeccC---ceeeeecC-CceEE
Confidence 5678889999999999999999999999999999999999999999999 999999999987 66666654 46799
Q ss_pred EEEEeCCCCEEEEEEcCCeEEEEECCCCcEE----------EeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 003236 773 SCVFHPTFPSLLVIGCYETLELWNMTENKTL----------TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 837 (837)
Q Consensus 773 sv~fspdg~~L~sgs~dg~I~IwDl~s~~~~----------~l~~h~~~V~sla~spdg~~LaSgs~DG~I~IWd 837 (837)
+++|+|++. +++++.|+.|++||++++..+ ....|...|++++|+|++++||+|+.||.|+|||
T Consensus 261 ~~~~~~~~~-~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~Dg~v~iW~ 334 (340)
T 4aow_A 261 ALCFSPNRY-WLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQ 334 (340)
T ss_dssp EEEECSSSS-EEEEEETTEEEEEETTTTEEEEEECCC-------CCCCCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred eeecCCCCc-eeeccCCCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECCCCCEEEEEeCCCEEEEEe
Confidence 999999876 667778999999999987655 2346889999999999999999999999999997
|
| >1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.8e-37 Score=341.35 Aligned_cols=311 Identities=13% Similarity=0.177 Sum_probs=266.7
Q ss_pred CC-eEEcccCCCceEEeec----CCCCCCCCccccccccCCCeeeeEEEE----------ecCCCCCeEEEEEcCCCCEE
Q 003236 506 DR-FVDDGSLDDNVESFLS----PDDADPRDRVGRSAEVGKGFTFTEFQL----------IPASTSKVESCHFSPDGKLL 570 (837)
Q Consensus 506 ~~-~v~~Gs~D~~v~~w~s----~~~~~~~~~~~~~~~~~~g~~~~~~~~----------l~~H~~~V~sl~fSpdg~~L 570 (837)
.. ++++|+.|+.|++|.. ...... ..+..... ..+|.+.|++++|+|++++|
T Consensus 57 ~~~~l~~~~~dg~i~iw~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l 123 (425)
T 1r5m_A 57 DESILAYGEKNSVARLARIVETDQEGKKY-------------WKLTIIAELRHPFALSASSGKTTNQVTCLAWSHDGNSI 123 (425)
T ss_dssp CTTEEEEEETBTEEEEEEEEEC------C-------------EEEEEEEEEECCCCCC------CBCEEEEEECTTSSEE
T ss_pred CCcEEEEecCCceEEEEEEecccCCcccc-------------ccccccccccccccccccccCCCCceEEEEEcCCCCEE
Confidence 35 8999999999999976 332100 01111122 22378899999999999999
Q ss_pred EEEECCCcEEEEeCCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeEEeeccccc--------
Q 003236 571 ATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTT-------- 642 (837)
Q Consensus 571 asgs~Dg~I~VWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~~~~~~~~~~~h~~~-------- 642 (837)
++|+.||.|+||| .+++.+..+..|...|.+++|+|++++|++++.|+.|++||+.++. .+..+..+...
T Consensus 124 ~~~~~dg~i~i~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~ 201 (425)
T 1r5m_A 124 VTGVENGELRLWN-KTGALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGT-VMQHFELKETGGSSINAEN 201 (425)
T ss_dssp EEEETTSCEEEEE-TTSCEEEEECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTE-EEEEECCC-----------
T ss_pred EEEeCCCeEEEEe-CCCCeeeeccCCCccEEEEEECCCCCEEEEEecCCeEEEEECCCCc-EEEEeeccccCccceeecc
Confidence 9999999999999 6778888999999999999999999999999999999999998765 46666666666
Q ss_pred -------eEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeeEEe-cCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCC
Q 003236 643 -------VMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK-CQSGATQMRFQPRLGRILAAAIENYISILDVETQ 714 (837)
Q Consensus 643 -------V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~-~~~~i~sl~~sp~g~~llags~dg~I~iwDl~s~ 714 (837)
+.+++|++++ .+++++.++.|++||+.+++.+..+. +...+.+++|+|++.+|++++.|+.|++||++++
T Consensus 202 ~~~~~~~~~~~~~~~~~--~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~ 279 (425)
T 1r5m_A 202 HSGDGSLGVDVEWVDDD--KFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNG 279 (425)
T ss_dssp ----CCCBSCCEEEETT--EEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEECSSSB
T ss_pred ccCCcceeeEEEEcCCC--EEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCC
Confidence 9999999874 46688889999999999988887775 4567999999999999999999999999999999
Q ss_pred eEEEEEcCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEE
Q 003236 715 VCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLE 793 (837)
Q Consensus 715 ~~~~~l~~h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fspdg~~L~sgs~dg~I~ 793 (837)
+.+..+..|...|.+++|+|++ +|++++ |+.|++||++++ ..+..+..|...+.+++|+|++.+|++++.|+.|+
T Consensus 280 ~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~---~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~ 355 (425)
T 1r5m_A 280 NSQNCFYGHSQSIVSASWVGDD-KVISCSMDGSVRLWSLKQN---TLLALSIVDGVPIFAGRISQDGQKYAVAFMDGQVN 355 (425)
T ss_dssp SCSEEECCCSSCEEEEEEETTT-EEEEEETTSEEEEEETTTT---EEEEEEECTTCCEEEEEECTTSSEEEEEETTSCEE
T ss_pred ccceEecCCCccEEEEEECCCC-EEEEEeCCCcEEEEECCCC---cEeEecccCCccEEEEEEcCCCCEEEEEECCCeEE
Confidence 9899999999999999999999 888887 999999999887 78888888999999999999999999999999999
Q ss_pred EEECCCCc--------------------EE-EeccCCC--CeeEEEEeCCCCEEEEEECCCcEEEeC
Q 003236 794 LWNMTENK--------------------TL-TLSAHDK--LVSSLAASTVNGMVASASHDKCVKIWK 837 (837)
Q Consensus 794 IwDl~s~~--------------------~~-~l~~h~~--~V~sla~spdg~~LaSgs~DG~I~IWd 837 (837)
+||+.+++ .+ .+..|.. .|++++|+|++++|++++.||.|+|||
T Consensus 356 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~ 422 (425)
T 1r5m_A 356 VYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQSSQDNDYIFDLSWNCAGNKISVAYSLQEGSVVA 422 (425)
T ss_dssp EEECHHHHC--------------CEECCEEEEECCTTCCCCEEEEEECTTSSEEEEEESSSCCEEEE
T ss_pred EEECCCCccceeeeecccccccCcccchhhhhhcCcccCCceEEEEccCCCceEEEEecCceEEEEe
Confidence 99998877 55 6778866 999999999999999999999999996
|
| >2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.9e-38 Score=351.86 Aligned_cols=311 Identities=16% Similarity=0.227 Sum_probs=267.5
Q ss_pred CeEEcc----------cCCCceEEeecCCCCCCCCccccccccCCCeeeeEEEEecCCCCCeEEEEEcCCCCEEEEEECC
Q 003236 507 RFVDDG----------SLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHD 576 (837)
Q Consensus 507 ~~v~~G----------s~D~~v~~w~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~H~~~V~sl~fSpdg~~Lasgs~D 576 (837)
.++++| +.|+.|++|........ ..+.. ..|...|++++|+|++++|++|+.|
T Consensus 26 ~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~----------------~~~~~-~~~~~~v~~~~~s~~~~~l~~~~~d 88 (416)
T 2pm9_A 26 PLLVSGTVSGTVDANFSTDSSLELWSLLAADSE----------------KPIAS-LQVDSKFNDLDWSHNNKIIAGALDN 88 (416)
T ss_dssp CEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGC----------------SCSCC-CCCSSCEEEEEECSSSSCEEEEESS
T ss_pred CEEEEEecCcccccccCCCCeEEEEEccCCCCC----------------cEEEE-EecCCceEEEEECCCCCeEEEEccC
Confidence 377777 88889999966443110 11112 2588899999999999999999999
Q ss_pred CcEEEEeCCC----CeEEEEeccCCCCeEEEEEcCC-CCEEEEEeCCCeEEEEEcCCCC------ce--eEEeeccccce
Q 003236 577 KKAVLWCTES----FTVKSTLEEHTQWITDVRFSPS-LSRLATSSADRTVRVWDTENPD------YS--LRTFTGHSTTV 643 (837)
Q Consensus 577 g~I~VWd~~t----~~~~~~l~~h~~~I~~l~fspd-g~~Latgs~Dg~I~IWDl~~~~------~~--~~~~~~h~~~V 643 (837)
|.|+|||+.+ .+.+..+..|...|.+++|+|+ +.+|++++.|+.|++||+.+.. .. ...+..|...|
T Consensus 89 g~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v 168 (416)
T 2pm9_A 89 GSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEV 168 (416)
T ss_dssp SCEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCC
T ss_pred CeEEEeecccccccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCccccccccccccccccCCCCCe
Confidence 9999999987 4588889999999999999998 8999999999999999999865 22 22346799999
Q ss_pred EEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeeEEec-------CCCeeEEEEecCC-CEEEEEEcCC---eEEEEECC
Q 003236 644 MSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-------QSGATQMRFQPRL-GRILAAAIEN---YISILDVE 712 (837)
Q Consensus 644 ~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~-------~~~i~sl~~sp~g-~~llags~dg---~I~iwDl~ 712 (837)
.+++|+|++..++++++.|+.|++||+++++.+..+.. ...+.+++|+|++ ..+++++.++ .|++||++
T Consensus 169 ~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~ 248 (416)
T 2pm9_A 169 ISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLR 248 (416)
T ss_dssp CEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETT
T ss_pred eEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCC
Confidence 99999999777888999999999999999999888876 4679999999997 5888888888 99999999
Q ss_pred CC-eEEEEEc-CCCCCEEEEEEcC-CCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCC-CEEEEEE
Q 003236 713 TQ-VCRLKLQ-GHKNQVHSVCWNT-SGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTF-PSLLVIG 787 (837)
Q Consensus 713 s~-~~~~~l~-~h~~~V~sl~~sp-dg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fspdg-~~L~sgs 787 (837)
++ .++..+. +|...|.+++|+| ++.+|++++ |+.|++||++++ ..+..+..|...|.+++|+|++ .+|++++
T Consensus 249 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~---~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~ 325 (416)
T 2pm9_A 249 NANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESA---EQLSQFPARGNWCFKTKFAPEAPDLFACAS 325 (416)
T ss_dssp STTSCSBCCCSCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSC---CEEEEEECSSSCCCCEEECTTCTTEEEECC
T ss_pred CCCCCcEEeecCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCC---ccceeecCCCCceEEEEECCCCCCEEEEEe
Confidence 86 6677777 8999999999999 899999998 999999999987 7788888999999999999999 8999999
Q ss_pred cCCeEEEEECCCCcEE-Ee-----------------------------------ccCCCCeeEEEEeCCCCEEEEEECCC
Q 003236 788 CYETLELWNMTENKTL-TL-----------------------------------SAHDKLVSSLAASTVNGMVASASHDK 831 (837)
Q Consensus 788 ~dg~I~IwDl~s~~~~-~l-----------------------------------~~h~~~V~sla~spdg~~LaSgs~DG 831 (837)
.|+.|++||+.+.... .. ..|...+.+++|+|+|++|++++.||
T Consensus 326 ~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~la~~~~d~ 405 (416)
T 2pm9_A 326 FDNKIEVQTLQNLTNTLDEQETETKQQESETDFWNNVSREESKEKPSVFHLQAPTWYGEPSPAAHWAFGGKLVQITPDGK 405 (416)
T ss_dssp SSSEEEEEESCCCCCSSCC----------------------CCSCCCSSCCCCCSTTCCCSCCCEEETTTEEECBCTTSS
T ss_pred cCCcEEEEEccCCCCCcccccccccccCCcccccccccccccccccccccccCCccccCCccceEEeeCCeEEEEeCCCC
Confidence 9999999999876532 10 01667888999999999999999999
Q ss_pred cEEEeC
Q 003236 832 CVKIWK 837 (837)
Q Consensus 832 ~I~IWd 837 (837)
.|+|||
T Consensus 406 ~v~~w~ 411 (416)
T 2pm9_A 406 GVSITN 411 (416)
T ss_dssp CBCCBC
T ss_pred eEEEEE
Confidence 999997
|
| >1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-36 Score=339.22 Aligned_cols=287 Identities=14% Similarity=0.152 Sum_probs=255.4
Q ss_pred eeEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCe------EEEEeccCCCCeEEEEEcCC----C---CE
Q 003236 545 FTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFT------VKSTLEEHTQWITDVRFSPS----L---SR 611 (837)
Q Consensus 545 ~~~~~~l~~H~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~------~~~~l~~h~~~I~~l~fspd----g---~~ 611 (837)
......+.+|.+.|++|+|+| ++|++|+.||.|+|||+.+++ .+..+..|...|++++|+|+ + .+
T Consensus 6 ~~~~~~~~~h~~~i~~~~~~~--~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~ 83 (397)
T 1sq9_A 6 IATANAGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCL 83 (397)
T ss_dssp EEEEEESSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEE
T ss_pred hhhhhhhhhhhcCeEEEEecC--CeEEEEcCCCEEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCccccE
Confidence 345677889999999999998 799999999999999999887 67888899999999999999 9 99
Q ss_pred EEEEeCCCeEEEEEcCCCCc----eeEEeecc-----ccceEEEEEc----CCCCeEEEEEeCCCcEEEEECCC------
Q 003236 612 LATSSADRTVRVWDTENPDY----SLRTFTGH-----STTVMSLDFH----PSKEDLLCSCDNNSEIRYWSINN------ 672 (837)
Q Consensus 612 Latgs~Dg~I~IWDl~~~~~----~~~~~~~h-----~~~V~sl~fs----pdg~~llasgs~Dg~I~vwDl~t------ 672 (837)
|++++.|+.|++||+.++.. .+..+..| ...|.+++|+ |++..+|++++.||.|++||+.+
T Consensus 84 l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~ 163 (397)
T 1sq9_A 84 VATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESN 163 (397)
T ss_dssp EEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHH
T ss_pred EEEEcCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCccccccc
Confidence 99999999999999987653 15677778 5899999999 98875377899999999999998
Q ss_pred Ceeee-----EEe--------cCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEcC---C---CCCEEEEEEc
Q 003236 673 GSCAG-----VFK--------CQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQG---H---KNQVHSVCWN 733 (837)
Q Consensus 673 ~~~i~-----~~~--------~~~~i~sl~~sp~g~~llags~dg~I~iwDl~s~~~~~~l~~---h---~~~V~sl~~s 733 (837)
++.+. .+. +...+.+++|+|++ .+++++.|+.|++||+++++.+..+.. | ...|.+++|+
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~ 242 (397)
T 1sq9_A 164 SLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFS 242 (397)
T ss_dssp HTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEEC
T ss_pred cceeeccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCCcEEEEECCCCceeEEEeccccccccCCccceEEEC
Confidence 66665 554 36779999999999 999999999999999999999999998 9 9999999999
Q ss_pred CCCCEEEEEe-C---CeEEEEEcCCCCCceeEEEeec-------------CCCceEEEEEeCCCCEEEEEEcCCeEEEEE
Q 003236 734 TSGEYLASVS-D---ELVRVWSIGSGSKGECIHELSC-------------TGNKFHSCVFHPTFPSLLVIGCYETLELWN 796 (837)
Q Consensus 734 pdg~~Lasgs-D---g~I~IwDl~s~~~~~~i~~~~~-------------~~~~I~sv~fspdg~~L~sgs~dg~I~IwD 796 (837)
|++.+|++++ | +.|++||++++ ..+..+.. |...|.+++|+|++.+|++++.|+.|++||
T Consensus 243 ~~~~~l~~~~~d~~~g~i~i~d~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd 319 (397)
T 1sq9_A 243 PQGSLLAIAHDSNSFGCITLYETEFG---ERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWD 319 (397)
T ss_dssp SSTTEEEEEEEETTEEEEEEEETTTC---CEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEE
T ss_pred CCCCEEEEEecCCCCceEEEEECCCC---cccceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeCCCeEEEEE
Confidence 9999999998 8 89999999987 67777877 899999999999999999999999999999
Q ss_pred CCCCcEE-Eec------cC---------------CCCeeEEEEeCCC----------CEEEEEECCCcEEEeC
Q 003236 797 MTENKTL-TLS------AH---------------DKLVSSLAASTVN----------GMVASASHDKCVKIWK 837 (837)
Q Consensus 797 l~s~~~~-~l~------~h---------------~~~V~sla~spdg----------~~LaSgs~DG~I~IWd 837 (837)
+.+++.+ .+. .| ...|++++|+|++ .+|++++.||.|+|||
T Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~ 392 (397)
T 1sq9_A 320 VKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFR 392 (397)
T ss_dssp TTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEE
T ss_pred cCCCceeEEEecccCcccchhhhhccccccccccCCceeEEEeccccccccccccccceEEEecCCCcEEEEE
Confidence 9999877 555 67 9999999999998 7999999999999996
|
| >2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A | Back alignment and structure |
|---|
Probab=100.00 E-value=8.5e-36 Score=322.61 Aligned_cols=275 Identities=19% Similarity=0.299 Sum_probs=242.8
Q ss_pred ccCCCeEEcccCCCceEEeecCCCCCCCCccccccccCCCeeeeEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEE
Q 003236 503 TDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLW 582 (837)
Q Consensus 503 ~~~~~~v~~Gs~D~~v~~w~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~H~~~V~sl~fSpdg~~Lasgs~Dg~I~VW 582 (837)
.+...++++|+.|+.|++|..... ..+..+..|...|.+++|+|++++|++|+.|++|+||
T Consensus 22 sp~~~~l~s~~~dg~v~lWd~~~~-------------------~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~vw 82 (304)
T 2ynn_A 22 HPTEPWVLTTLYSGRVELWNYETQ-------------------VEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVF 82 (304)
T ss_dssp CSSSSEEEEEETTSEEEEEETTTT-------------------EEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEE
T ss_pred CCCCCEEEEEcCCCcEEEEECCCC-------------------ceeEEeeccCCcEEEEEEeCCCCEEEEECCCCEEEEE
Confidence 334478999999999999965432 2456788999999999999999999999999999999
Q ss_pred eCCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeEEeeccccceEEEEEcCCCCeEEEEEeCC
Q 003236 583 CTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN 662 (837)
Q Consensus 583 d~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~sl~fspdg~~llasgs~D 662 (837)
|+.+++.+..+.+|.+.|.+++|+|++.+|++|+.|++|++||+.++......+.+|...|.+++|+|.+..+|++|+.|
T Consensus 83 d~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~D 162 (304)
T 2ynn_A 83 NYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLD 162 (304)
T ss_dssp ETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTTCTTEEEEEETT
T ss_pred ECCCCcEEEEEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhhhhcccCCcEEEEEECCCCCCEEEEEeCC
Confidence 99999999999999999999999999999999999999999999987666778899999999999999766788899999
Q ss_pred CcEEEEECCCCeeeeEEec--CCCeeEEEEec--CCCEEEEEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEcCCCCE
Q 003236 663 SEIRYWSINNGSCAGVFKC--QSGATQMRFQP--RLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEY 738 (837)
Q Consensus 663 g~I~vwDl~t~~~i~~~~~--~~~i~sl~~sp--~g~~llags~dg~I~iwDl~s~~~~~~l~~h~~~V~sl~~spdg~~ 738 (837)
+.|++||++.+.....+.. ...+..+.|+| ++.++++++.|+.|++||+++++++..+.+|...|.+++|+|++.+
T Consensus 163 ~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~h~~~v~~~~~~p~~~~ 242 (304)
T 2ynn_A 163 RTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPI 242 (304)
T ss_dssp SEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSE
T ss_pred CeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCccceeeCCCCCCEEEEEECCCCCE
Confidence 9999999988776666543 35688899987 6779999999999999999999999999999999999999999999
Q ss_pred EEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCE-EEEEEcCCeEEEEECCC
Q 003236 739 LASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPS-LLVIGCYETLELWNMTE 799 (837)
Q Consensus 739 Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fspdg~~-L~sgs~dg~I~IwDl~s 799 (837)
|++++ |+.|+|||+.++ +++..+..+...+.+++|+|++.. +++++.++.+.+|++.+
T Consensus 243 l~s~s~Dg~i~iWd~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~asg~~~g~~~~~~~~ 302 (304)
T 2ynn_A 243 IISGSEDGTLKIWNSSTY---KVEKTLNVGLERSWCIATHPTGRKNYIASGFDNGFTVLSLGN 302 (304)
T ss_dssp EEEEETTSCEEEEETTTC---CEEEEECCSSSSEEEEEECTTCGGGCEEEEETTEEEEEECC-
T ss_pred EEEEcCCCeEEEEECCCC---ceeeeccCCCccEEEEEECCCCCceEEEEecCCceEEEEecc
Confidence 99999 999999999987 788888888999999999998853 34555566688888765
|
| >4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-36 Score=335.26 Aligned_cols=244 Identities=17% Similarity=0.283 Sum_probs=211.9
Q ss_pred CCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEE----EeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCC
Q 003236 553 ASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKS----TLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTEN 628 (837)
Q Consensus 553 ~H~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~~~----~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~ 628 (837)
.|...|.+++|+||+ .|++|+.||+|+|||+.+++.+. .+.+|.+.|++|+|+|++++|++|+.|++|+|||+.+
T Consensus 80 ~~~~~v~~~~~s~d~-~l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~ 158 (344)
T 4gqb_B 80 QTEAGVADLTWVGER-GILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQ 158 (344)
T ss_dssp EESSCEEEEEEETTT-EEEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT
T ss_pred ccCCCEEEEEEeCCC-eEEEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCC
Confidence 466789999999986 78899999999999999876543 3458999999999999999999999999999999998
Q ss_pred CCceeEEeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeeEEec---CCCeeEEEEecCC-CEEEEEEcCC
Q 003236 629 PDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC---QSGATQMRFQPRL-GRILAAAIEN 704 (837)
Q Consensus 629 ~~~~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~---~~~i~sl~~sp~g-~~llags~dg 704 (837)
++ .+..+.+|...|.+++|++++..+|++|+.|+.|++||++++++...+.. ...+.+++|+|++ .++++++.|+
T Consensus 159 ~~-~~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg 237 (344)
T 4gqb_B 159 QV-VLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENG 237 (344)
T ss_dssp TE-EEEEECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEETTS
T ss_pred Cc-EEEEEcCcCCceEEEEecCCCCCceeeeccccccccccccccceeeeeecceeeccceeeeecCCCCcceEEeccCC
Confidence 65 58889999999999999999988999999999999999999998877653 3458899999954 5678889999
Q ss_pred eEEEEECCCCeEEEEEcCCCCCEEEEEEcCCC-CEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCE
Q 003236 705 YISILDVETQVCRLKLQGHKNQVHSVCWNTSG-EYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPS 782 (837)
Q Consensus 705 ~I~iwDl~s~~~~~~l~~h~~~V~sl~~spdg-~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fspdg~~ 782 (837)
.|++||+++++++..+.+|...|++++|+|++ .+|++++ |+.|+|||+.++ + +..+.+|...|.+++|+|++..
T Consensus 238 ~v~~wd~~~~~~~~~~~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~---~-~~~~~~H~~~V~~v~~sp~~~~ 313 (344)
T 4gqb_B 238 TVSLVDTKSTSCVLSSAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLS---E-LFRSQAHRDFVRDATWSPLNHS 313 (344)
T ss_dssp EEEEEESCC--CCEEEECCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCC---E-EEEECCCSSCEEEEEECSSSTT
T ss_pred cEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCC---c-EEEEcCCCCCEEEEEEeCCCCe
Confidence 99999999999999999999999999999998 5788888 999999999876 3 3456789999999999999875
Q ss_pred -EEEEEcCCeEEEEECCCCcE
Q 003236 783 -LLVIGCYETLELWNMTENKT 802 (837)
Q Consensus 783 -L~sgs~dg~I~IwDl~s~~~ 802 (837)
|++++.|++|++|++.+...
T Consensus 314 llas~s~D~~v~~w~v~~~~~ 334 (344)
T 4gqb_B 314 LLTTVGWDHQVVHHVVPTEPL 334 (344)
T ss_dssp EEEEEETTSCEEEEECCC---
T ss_pred EEEEEcCCCeEEEEECCCCCC
Confidence 56888999999999987543
|
| >1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-36 Score=331.44 Aligned_cols=282 Identities=15% Similarity=0.191 Sum_probs=247.5
Q ss_pred ecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCe--EEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCC
Q 003236 551 IPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFT--VKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTEN 628 (837)
Q Consensus 551 l~~H~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~--~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~ 628 (837)
+..|.++|++++|+|++++||+|+.|+.|+|||+.+++ .+..+.+|...|.+++|+|++++|++++.||.|++||+.+
T Consensus 4 ~~~~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~ 83 (372)
T 1k8k_C 4 HSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKG 83 (372)
T ss_dssp EESCSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEET
T ss_pred ecccCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEECCC
Confidence 45699999999999999999999999999999999987 8888999999999999999999999999999999999987
Q ss_pred CCce-eEEeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCee---eeEEe--cCCCeeEEEEecCCCEEEEEEc
Q 003236 629 PDYS-LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSC---AGVFK--CQSGATQMRFQPRLGRILAAAI 702 (837)
Q Consensus 629 ~~~~-~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~---i~~~~--~~~~i~sl~~sp~g~~llags~ 702 (837)
++.. ...+..|...|.+++|+|++. ++++++.|+.|++||++.+.. ...+. +...+.+++|+|++.++++++.
T Consensus 84 ~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~ 162 (372)
T 1k8k_C 84 RTWKPTLVILRINRAARCVRWAPNEK-KFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSC 162 (372)
T ss_dssp TEEEEEEECCCCSSCEEEEEECTTSS-EEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEET
T ss_pred CeeeeeEEeecCCCceeEEEECCCCC-EEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCCEEEEEcC
Confidence 6532 334467899999999999976 666888999999999988763 22322 3567999999999999999999
Q ss_pred CCeEEEEEC------------------CCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEE
Q 003236 703 ENYISILDV------------------ETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHE 763 (837)
Q Consensus 703 dg~I~iwDl------------------~s~~~~~~l~~h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~ 763 (837)
|+.|++||+ ..+..+..+..|...|.+++|+|++.+|++++ |+.|++||++++ .++..
T Consensus 163 dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~---~~~~~ 239 (372)
T 1k8k_C 163 DFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKK---MAVAT 239 (372)
T ss_dssp TSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGT---TEEEE
T ss_pred CCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEeCCCEEEEEECCCC---ceeEE
Confidence 999999995 46788889989999999999999999999999 999999999987 67888
Q ss_pred eecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCC--CcE---------------------------------------
Q 003236 764 LSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTE--NKT--------------------------------------- 802 (837)
Q Consensus 764 ~~~~~~~I~sv~fspdg~~L~sgs~dg~I~IwDl~s--~~~--------------------------------------- 802 (837)
+..+...|.+++|+|++.+|+++ .|+.|++||+.+ ++.
T Consensus 240 ~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (372)
T 1k8k_C 240 LASETLPLLAVTFITESSLVAAG-HDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAG 318 (372)
T ss_dssp EECSSCCEEEEEEEETTEEEEEE-TTSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCCC---------
T ss_pred EccCCCCeEEEEEecCCCEEEEE-eCCeEEEEEccCcCceEEEeeccCccccchhhhcchhhhhhhcccccccccCcccc
Confidence 88899999999999999877766 999999999987 431
Q ss_pred EEe-ccCCCCeeEEEEe-CCC---CEEEEEECCCcEEEeC
Q 003236 803 LTL-SAHDKLVSSLAAS-TVN---GMVASASHDKCVKIWK 837 (837)
Q Consensus 803 ~~l-~~h~~~V~sla~s-pdg---~~LaSgs~DG~I~IWd 837 (837)
..+ .+|...|++++|+ +++ .+|++|+.||.|+|||
T Consensus 319 ~~~~~~h~~~v~~~~~~~~~g~~~~~l~s~~~Dg~i~~W~ 358 (372)
T 1k8k_C 319 AGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWD 358 (372)
T ss_dssp CCCSSSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEE
T ss_pred ccccccccCCcceeEEecCCCcceeeEEEecCCCceEEEE
Confidence 222 3899999999976 666 8999999999999996
|
| >3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-35 Score=357.02 Aligned_cols=285 Identities=21% Similarity=0.356 Sum_probs=244.6
Q ss_pred eEEEEecCCCCCeEEEEEcCCC-CEEEEEECCCcEEEEeCCC-----CeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCC
Q 003236 546 TEFQLIPASTSKVESCHFSPDG-KLLATGGHDKKAVLWCTES-----FTVKSTLEEHTQWITDVRFSPSLSRLATSSADR 619 (837)
Q Consensus 546 ~~~~~l~~H~~~V~sl~fSpdg-~~Lasgs~Dg~I~VWd~~t-----~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg 619 (837)
.....+++|.+.|+||+|++++ ++|++|+.|++|+|||+.+ +.....+.+|...|.+++|+|++++|++|+.|+
T Consensus 373 ~~~~~l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg 452 (694)
T 3dm0_A 373 VLKGTMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDG 452 (694)
T ss_dssp EEEEEEECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSSEEEEEETTS
T ss_pred chhhhcccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCCEEEEEeCCC
Confidence 3456789999999999999864 7999999999999999875 345678899999999999999999999999999
Q ss_pred eEEEEEcCCCCceeEEeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeeEEe----cCCCeeEEEEecCC-
Q 003236 620 TVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK----CQSGATQMRFQPRL- 694 (837)
Q Consensus 620 ~I~IWDl~~~~~~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~----~~~~i~sl~~sp~g- 694 (837)
+|+|||+.++. .+..+.+|...|.+++|+|++. +|++|+.|++|++||+.......... +...|.+++|+|++
T Consensus 453 ~v~vwd~~~~~-~~~~~~~h~~~v~~~~~s~~~~-~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~ 530 (694)
T 3dm0_A 453 ELRLWDLAAGV-STRRFVGHTKDVLSVAFSLDNR-QIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTL 530 (694)
T ss_dssp EEEEEETTTTE-EEEEEECCSSCEEEEEECTTSS-CEEEEETTSCEEEECTTSCEEEEECSSTTSCSSCEEEEEECSCSS
T ss_pred cEEEEECCCCc-ceeEEeCCCCCEEEEEEeCCCC-EEEEEeCCCEEEEEECCCCcceeeccCCCCCCCcEEEEEEeCCCC
Confidence 99999999865 4788899999999999999977 55699999999999987554333322 34569999999986
Q ss_pred -CEEEEEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceE
Q 003236 695 -GRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFH 772 (837)
Q Consensus 695 -~~llags~dg~I~iwDl~s~~~~~~l~~h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~ 772 (837)
..+++++.|+.|++||++++++...+.+|...|++++|+|++.+|++++ |+.|+|||++++ .++..+.. ...+.
T Consensus 531 ~~~l~s~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~---~~~~~~~~-~~~v~ 606 (694)
T 3dm0_A 531 QPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEG---KKLYSLEA-NSVIH 606 (694)
T ss_dssp SCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSBCEEEETTTT---EEEECCBC-SSCEE
T ss_pred cceEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCC---ceEEEecC-CCcEE
Confidence 5799999999999999999999999999999999999999999999999 999999999987 56666554 56799
Q ss_pred EEEEeCCCCEEEEEEcCCeEEEEECCCCcEEE-eccC-------------------CCCeeEEEEeCCCCEEEEEECCCc
Q 003236 773 SCVFHPTFPSLLVIGCYETLELWNMTENKTLT-LSAH-------------------DKLVSSLAASTVNGMVASASHDKC 832 (837)
Q Consensus 773 sv~fspdg~~L~sgs~dg~I~IwDl~s~~~~~-l~~h-------------------~~~V~sla~spdg~~LaSgs~DG~ 832 (837)
+++|+|++.+|+++ .++.|+|||+.+++.+. +..+ ...+++++|+|++++|++|+.||.
T Consensus 607 ~~~~sp~~~~l~~~-~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~spdg~~l~sgs~Dg~ 685 (694)
T 3dm0_A 607 ALCFSPNRYWLCAA-TEHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADGSTLFSGYTDGV 685 (694)
T ss_dssp EEEECSSSSEEEEE-ETTEEEEEETTTTEEEEEECCCCC----------------CCCCEEEEEECTTSSEEEEEETTSE
T ss_pred EEEEcCCCcEEEEE-cCCCEEEEECCCCCChhhhccccccccccccccccccCCceeEEeeeEEEcCCCCEEEEEcCCCe
Confidence 99999998866655 56679999999988762 2211 123789999999999999999999
Q ss_pred EEEeC
Q 003236 833 VKIWK 837 (837)
Q Consensus 833 I~IWd 837 (837)
|+|||
T Consensus 686 i~iW~ 690 (694)
T 3dm0_A 686 IRVWG 690 (694)
T ss_dssp EEEEE
T ss_pred EEEEe
Confidence 99996
|
| >3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A | Back alignment and structure |
|---|
Probab=100.00 E-value=6e-36 Score=336.08 Aligned_cols=312 Identities=15% Similarity=0.230 Sum_probs=259.4
Q ss_pred ccccCCCeEEcccCCCceEEeecCCCCCCCCccccccccCCCeeeeEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEE
Q 003236 501 QLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAV 580 (837)
Q Consensus 501 ~l~~~~~~v~~Gs~D~~v~~w~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~H~~~V~sl~fSpdg~~Lasgs~Dg~I~ 580 (837)
.+.+...++++|+.|+.+++|........ ..+..| ..+....|++++++||+|+.||.|+
T Consensus 63 ~~s~~g~~l~~~~~d~~v~i~d~~~~~~~-------------------~~~~~~-~~~~~~~~~~~~~~l~~~~~dg~i~ 122 (420)
T 3vl1_A 63 TFEKVGSHLYKARLDGHDFLFNTIIRDGS-------------------KMLKRA-DYTAVDTAKLQMRRFILGTTEGDIK 122 (420)
T ss_dssp EEEEEETTEEEEEETTEEEEEECCSEETT-------------------TTSCSC-CEEEEEEECSSSCEEEEEETTSCEE
T ss_pred eeeecCCeEEEEEcCCcEEEEEeccccee-------------------eEEecC-CceEEEEEecCCCEEEEEECCCCEE
Confidence 34555678899999999999965433111 112234 3355557899999999999999999
Q ss_pred EEeCCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeEEeeccccceEEEEEcCCCCeEEEEEe
Q 003236 581 LWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCD 660 (837)
Q Consensus 581 VWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~sl~fspdg~~llasgs 660 (837)
|||+.+++....+..|...|++++|+|++++|++++.|+.|++||+.+++. +..+.+|...|.+++|+|++. +|++++
T Consensus 123 iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~-~~~~~~h~~~v~~~~~~~~~~-~l~s~~ 200 (420)
T 3vl1_A 123 VLDSNFNLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSN-PRTLIGHRATVTDIAIIDRGR-NVLSAS 200 (420)
T ss_dssp EECTTSCEEEEETTSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCC-CEEEECCSSCEEEEEEETTTT-EEEEEE
T ss_pred EEeCCCcceeeecccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcC-ceEEcCCCCcEEEEEEcCCCC-EEEEEc
Confidence 999999999999899999999999999999999999999999999998764 678889999999999999976 566999
Q ss_pred CCCcEEEEECCCCeeeeEEec----CCCee---------------------EEEEecCCCEEEEEEcCCeEEEEECCCCe
Q 003236 661 NNSEIRYWSINNGSCAGVFKC----QSGAT---------------------QMRFQPRLGRILAAAIENYISILDVETQV 715 (837)
Q Consensus 661 ~Dg~I~vwDl~t~~~i~~~~~----~~~i~---------------------sl~~sp~g~~llags~dg~I~iwDl~s~~ 715 (837)
.|+.|++||+++++++..+.. ...+. +++|+|++.++++++.|+.|++||+++++
T Consensus 201 ~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~ 280 (420)
T 3vl1_A 201 LDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKE 280 (420)
T ss_dssp TTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTCC
T ss_pred CCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCCc
Confidence 999999999999999888863 23344 44557888999999999999999999988
Q ss_pred EEEEEc-CCCCCEEEEEEcCCCC-EEEEEe-CCeEEEEEcCCCCCceeEEEeec-CCCceEEEEEeCCCCEEEEEEcCCe
Q 003236 716 CRLKLQ-GHKNQVHSVCWNTSGE-YLASVS-DELVRVWSIGSGSKGECIHELSC-TGNKFHSCVFHPTFPSLLVIGCYET 791 (837)
Q Consensus 716 ~~~~l~-~h~~~V~sl~~spdg~-~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~-~~~~I~sv~fspdg~~L~sgs~dg~ 791 (837)
.+..+. .|...|.+++|+|++. +|++++ |+.|++||++++. ..+..+.. +...+.++.+ +++.+|++++.|+.
T Consensus 281 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~--~~~~~~~~~~~~~v~~~~~-~~~~~l~s~~~d~~ 357 (420)
T 3vl1_A 281 QTIQLPSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPE--CPVGEFLINEGTPINNVYF-AAGALFVSSGFDTS 357 (420)
T ss_dssp EEEEECCTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTT--SCSEEEEESTTSCEEEEEE-ETTEEEEEETTTEE
T ss_pred eeEEcccccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCc--CchhhhhccCCCCceEEEe-CCCCEEEEecCCcc
Confidence 777765 4888999999999998 999988 9999999999874 23455555 5667777755 57789999999999
Q ss_pred EEEEECCCC----------cEEEeccCCCCeeEEEEeCCCC---EEEEEECCCcEEEeC
Q 003236 792 LELWNMTEN----------KTLTLSAHDKLVSSLAASTVNG---MVASASHDKCVKIWK 837 (837)
Q Consensus 792 I~IwDl~s~----------~~~~l~~h~~~V~sla~spdg~---~LaSgs~DG~I~IWd 837 (837)
|++||+... ....+..|...|.+++|+|++. .|++++.+|.+.+|+
T Consensus 358 v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~g~l~a~g~~g~~~~~~ 416 (420)
T 3vl1_A 358 IKLDIISDPESERPAIEFETPTFLVSNDDAVSQFCYVSDDESNGEVLEVGKNNFCALYN 416 (420)
T ss_dssp EEEEEECCTTCCSCEECTTSCEEECCSSCCCCEEEEECCSSSSCEEEEEETTTEEEEEE
T ss_pred EEEEeccCCCCCccceeccCccEEccCCcceEEEEEccCCCCcceEEEEcCCceEEEEe
Confidence 999998763 2335678899999999999999 788888999999995
|
| >3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.7e-35 Score=312.06 Aligned_cols=280 Identities=15% Similarity=0.232 Sum_probs=249.0
Q ss_pred eeeEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEE
Q 003236 544 TFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRV 623 (837)
Q Consensus 544 ~~~~~~~l~~H~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~I 623 (837)
.+.....+.+|.+.|++++| +++++|++|+.||.|+|||+.+++....+..|...|.+++|+|++.+|++++.|+.|++
T Consensus 7 ~~~~~~~l~~h~~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~ 85 (313)
T 3odt_A 7 GYQLSATLKGHDQDVRDVVA-VDDSKVASVSRDGTVRLWSKDDQWLGTVVYTGQGFLNSVCYDSEKELLLFGGKDTMING 85 (313)
T ss_dssp CCEEEEEECCCSSCEEEEEE-EETTEEEEEETTSEEEEEEESSSEEEEEEEECSSCEEEEEEETTTTEEEEEETTSCEEE
T ss_pred cHHHHHHhhCCCCCcEEEEe-cCCCEEEEEEcCCcEEEEECCCCEEEEEeecCCccEEEEEECCCCCEEEEecCCCeEEE
Confidence 34567889999999999999 99999999999999999999999999999999999999999999999999999999999
Q ss_pred EEcCCCC--ceeEEeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeeEEe-cCCCeeEEEEec-CCCEEEE
Q 003236 624 WDTENPD--YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK-CQSGATQMRFQP-RLGRILA 699 (837)
Q Consensus 624 WDl~~~~--~~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~-~~~~i~sl~~sp-~g~~lla 699 (837)
|++.... ..+..+.+|...|.+++|. + .++++++.|+.|++|| .++.+..+. +...+.++.|.+ ++..+++
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~-~~l~~~~~d~~i~~~d--~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~ 160 (313)
T 3odt_A 86 VPLFATSGEDPLYTLIGHQGNVCSLSFQ--D-GVVISGSWDKTAKVWK--EGSLVYNLQAHNASVWDAKVVSFSENKFLT 160 (313)
T ss_dssp EETTCCTTSCC-CEECCCSSCEEEEEEE--T-TEEEEEETTSEEEEEE--TTEEEEEEECCSSCEEEEEEEETTTTEEEE
T ss_pred EEeeecCCCCcccchhhcccCEEEEEec--C-CEEEEEeCCCCEEEEc--CCcEEEecccCCCceeEEEEccCCCCEEEE
Confidence 9987653 3467788899999999994 3 3777999999999999 566666665 467799999988 8999999
Q ss_pred EEcCCeEEEEECCCCeEEEEEcC-CCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEe
Q 003236 700 AAIENYISILDVETQVCRLKLQG-HKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFH 777 (837)
Q Consensus 700 gs~dg~I~iwDl~s~~~~~~l~~-h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fs 777 (837)
++.|+.|++|| .......+.. |...|.+++|+|++. +++++ |+.|++||++++ ..+..+..|...|.+++|+
T Consensus 161 ~~~d~~i~i~d--~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~---~~~~~~~~~~~~i~~~~~~ 234 (313)
T 3odt_A 161 ASADKTIKLWQ--NDKVIKTFSGIHNDVVRHLAVVDDGH-FISCSNDGLIKLVDMHTG---DVLRTYEGHESFVYCIKLL 234 (313)
T ss_dssp EETTSCEEEEE--TTEEEEEECSSCSSCEEEEEEEETTE-EEEEETTSEEEEEETTTC---CEEEEEECCSSCEEEEEEC
T ss_pred EECCCCEEEEe--cCceEEEEeccCcccEEEEEEcCCCe-EEEccCCCeEEEEECCch---hhhhhhhcCCceEEEEEEe
Confidence 99999999999 4566777777 899999999999999 66666 999999999987 6788888999999999999
Q ss_pred CCCCEEEEEEcCCeEEEEECCCCcEE-EeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 003236 778 PTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 837 (837)
Q Consensus 778 pdg~~L~sgs~dg~I~IwDl~s~~~~-~l~~h~~~V~sla~spdg~~LaSgs~DG~I~IWd 837 (837)
|++ .|++++.|+.|++||+.+++.+ .+..|...|.+++|+|++. +++++.||.|+|||
T Consensus 235 ~~~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~iw~ 293 (313)
T 3odt_A 235 PNG-DIVSCGEDRTVRIWSKENGSLKQVITLPAISIWSVDCMSNGD-IIVGSSDNLVRIFS 293 (313)
T ss_dssp TTS-CEEEEETTSEEEEECTTTCCEEEEEECSSSCEEEEEECTTSC-EEEEETTSCEEEEE
T ss_pred cCC-CEEEEecCCEEEEEECCCCceeEEEeccCceEEEEEEccCCC-EEEEeCCCcEEEEe
Confidence 999 5999999999999999999877 6778999999999999998 56789999999996
|
| >3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R* | Back alignment and structure |
|---|
Probab=100.00 E-value=9.6e-35 Score=316.75 Aligned_cols=275 Identities=17% Similarity=0.270 Sum_probs=240.5
Q ss_pred CCeEEcccCCCceEEeecCCCCCCCCccccccccCCCeeeeEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCC
Q 003236 506 DRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTE 585 (837)
Q Consensus 506 ~~~v~~Gs~D~~v~~w~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~H~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~ 585 (837)
..++++|+.|++|++|...... ......+..+.+|...|.+++|+|++++|++|+.|++|+|||+.
T Consensus 30 ~~~l~s~s~D~~v~~W~~~~~~--------------~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~v~~wd~~ 95 (319)
T 3frx_A 30 PNLLLSASRDKTLISWKLTGDD--------------QKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVA 95 (319)
T ss_dssp TTEEEEEETTSEEEEEEEEEET--------------TEEEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETT
T ss_pred ccEEEEecCCccEEEecCCCCC--------------ccccccceEEeCCcccEEEEEECCCCCEEEEEeCCCEEEEEECC
Confidence 3789999999999999653221 11224567889999999999999999999999999999999999
Q ss_pred CCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeEEeeccccceEEEEEcCCC-----CeEEEEEe
Q 003236 586 SFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSK-----EDLLCSCD 660 (837)
Q Consensus 586 t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~sl~fspdg-----~~llasgs 660 (837)
+++.+..+.+|...|.+++|+|++.+|++++.|++|++||+.. ..+..+.+|...|.++.|.|.. ..++++++
T Consensus 96 ~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~~--~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~ 173 (319)
T 3frx_A 96 TGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKG--QCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAG 173 (319)
T ss_dssp TTEEEEEEECCSSCEEEEEECTTSCEEEEEETTSCEEEEETTS--CEEEEECCCSSCEEEEEECCC------CCEEEEEE
T ss_pred CCCeeEEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCC--CeEEEEeccCCcEEEEEEccCCCCCCCccEEEEEe
Confidence 9999999999999999999999999999999999999999974 3577888999999999999863 34788999
Q ss_pred CCCcEEEEECCCCeeeeEEe-cCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEcCCCCEE
Q 003236 661 NNSEIRYWSINNGSCAGVFK-CQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYL 739 (837)
Q Consensus 661 ~Dg~I~vwDl~t~~~i~~~~-~~~~i~sl~~sp~g~~llags~dg~I~iwDl~s~~~~~~l~~h~~~V~sl~~spdg~~L 739 (837)
.|+.|++||+++.+....+. +...|.+++|+|++.+|++++.|+.|++||+++++++..+.. ...|.+++|+|++.+|
T Consensus 174 ~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~-~~~v~~~~~sp~~~~l 252 (319)
T 3frx_A 174 NDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSA-QDEVFSLAFSPNRYWL 252 (319)
T ss_dssp TTSCEEEEETTTTEEEEEECCCCSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEEC-CSCEEEEEECSSSSEE
T ss_pred CCCEEEEEECCcchhheeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEecC-CCcEEEEEEcCCCCEE
Confidence 99999999999998887765 456799999999999999999999999999999999988875 4689999999999999
Q ss_pred EEEeCCeEEEEEcCCCCCceeEEEee--------cCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCC
Q 003236 740 ASVSDELVRVWSIGSGSKGECIHELS--------CTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTEN 800 (837)
Q Consensus 740 asgsDg~I~IwDl~s~~~~~~i~~~~--------~~~~~I~sv~fspdg~~L~sgs~dg~I~IwDl~s~ 800 (837)
+++.++.|++|++... ..+..+. .+...+.+++|+|+|++|++++.|+.|+|||+.++
T Consensus 253 a~~~~~~i~v~~~~~~---~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~sg~~Dg~i~vWd~~t~ 318 (319)
T 3frx_A 253 AAATATGIKVFSLDPQ---YLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQVMTA 318 (319)
T ss_dssp EEEETTEEEEEEETTE---EEEEEECCCCTTCCGGGCCCEEEEEECTTSSEEEEEETTSCEEEEEEEEC
T ss_pred EEEcCCCcEEEEeCcC---eeeeccCccccccccCcCcceeEEEECCCCCEEEEeecCceEEEEEEeec
Confidence 9999888999999875 4444432 24567899999999999999999999999998654
|
| >1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.9e-35 Score=320.63 Aligned_cols=266 Identities=23% Similarity=0.367 Sum_probs=237.6
Q ss_pred CCeEEcccCCCceEEeecCCCCCCCCccccccccCCCeeeeEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCC
Q 003236 506 DRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTE 585 (837)
Q Consensus 506 ~~~v~~Gs~D~~v~~w~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~H~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~ 585 (837)
..++++|+.|+.|++|..... ..+..+..|...|.+++|+|++++|++|+.|+.|++|++.
T Consensus 67 ~~~l~s~s~Dg~v~iWd~~~~-------------------~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iw~~~ 127 (340)
T 1got_B 67 SRLLLSASQDGKLIIWDSYTT-------------------NKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLK 127 (340)
T ss_dssp SSEEEEEETTTEEEEEETTTC-------------------CEEEEEECSSSCEEEEEECTTSSEEEEEETTCEEEEEETT
T ss_pred CCEEEEEeCCCcEEEEECCCC-------------------CcceEeecCCccEEEEEECCCCCEEEEEeCCCeEEEEECc
Confidence 368999999999999965432 2356678899999999999999999999999999999998
Q ss_pred CC----eEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeEEeeccccceEEEEEcCCCCeEEEEEeC
Q 003236 586 SF----TVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDN 661 (837)
Q Consensus 586 t~----~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~sl~fspdg~~llasgs~ 661 (837)
+. .....+.+|.+.|.++.|++++. |++++.|++|++||+.++. .+..+.+|...|.+++|+|++. ++++|+.
T Consensus 128 ~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-l~s~s~d~~i~~wd~~~~~-~~~~~~~h~~~v~~~~~~~~~~-~l~sg~~ 204 (340)
T 1got_B 128 TREGNVRVSRELAGHTGYLSCCRFLDDNQ-IVTSSGDTTCALWDIETGQ-QTTTFTGHTGDVMSLSLAPDTR-LFVSGAC 204 (340)
T ss_dssp TCSBSCEEEEEEECCSSCEEEEEEEETTE-EEEEETTSCEEEEETTTTE-EEEEECCCSSCEEEEEECTTSS-EEEEEET
T ss_pred cCCCcceeEEEecCCCccEEEEEECCCCc-EEEEECCCcEEEEECCCCc-EEEEEcCCCCceEEEEECCCCC-EEEEEeC
Confidence 64 46677889999999999998764 8999999999999999865 4788899999999999999876 6779999
Q ss_pred CCcEEEEECCCCeeeeEEec-CCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEcC--CCCCEEEEEEcCCCCE
Q 003236 662 NSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQG--HKNQVHSVCWNTSGEY 738 (837)
Q Consensus 662 Dg~I~vwDl~t~~~i~~~~~-~~~i~sl~~sp~g~~llags~dg~I~iwDl~s~~~~~~l~~--h~~~V~sl~~spdg~~ 738 (837)
|+.|++||++++.++..+.. ...|.+++|+|++.+|++++.|+.|++||++++..+..+.. +...|++++|+|++.+
T Consensus 205 d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~ 284 (340)
T 1got_B 205 DASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRL 284 (340)
T ss_dssp TSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSE
T ss_pred CCcEEEEECCCCeeEEEEcCCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEccCCcccceEEEEECCCCCE
Confidence 99999999999998888864 56799999999999999999999999999999988777753 3357999999999999
Q ss_pred EEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEE
Q 003236 739 LASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWN 796 (837)
Q Consensus 739 Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fspdg~~L~sgs~dg~I~IwD 796 (837)
|++++ |+.|+|||+.++ ..+..+.+|...|.+++|+|++.+|++++.|+.|+|||
T Consensus 285 l~~g~~d~~i~vwd~~~~---~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~i~iWd 340 (340)
T 1got_B 285 LLAGYDDFNCNVWDALKA---DRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp EEEEETTSEEEEEETTTC---CEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred EEEECCCCeEEEEEcccC---cEeeEeecCCCcEEEEEEcCCCCEEEEEcCCccEEecC
Confidence 99999 999999999887 67788899999999999999999999999999999997
|
| >3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.8e-36 Score=328.42 Aligned_cols=286 Identities=15% Similarity=0.280 Sum_probs=245.8
Q ss_pred EEecCCCCCeEEEEEcCC----CCEEEEEECCCcEEEEeCCCCeEEEEecc-----CCCCeEEEEEcCC----CCEEEEE
Q 003236 549 QLIPASTSKVESCHFSPD----GKLLATGGHDKKAVLWCTESFTVKSTLEE-----HTQWITDVRFSPS----LSRLATS 615 (837)
Q Consensus 549 ~~l~~H~~~V~sl~fSpd----g~~Lasgs~Dg~I~VWd~~t~~~~~~l~~-----h~~~I~~l~fspd----g~~Latg 615 (837)
....+|.+.|++++|+|+ ...+++++.++.|+|||+.+++.+..+.. |...|++++|+|+ +.+|+++
T Consensus 12 ~~~~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~ 91 (366)
T 3k26_A 12 SLKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVA 91 (366)
T ss_dssp EEECTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEE
T ss_pred EeecCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEe
Confidence 344589999999999984 44666666778999999998777666543 5678999999998 6799999
Q ss_pred eCCCeEEEEEcCCCCceeEEeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeeEE----ecCCCeeEEEEe
Q 003236 616 SADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVF----KCQSGATQMRFQ 691 (837)
Q Consensus 616 s~Dg~I~IWDl~~~~~~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~----~~~~~i~sl~~s 691 (837)
+.||.|++||+.+++ .+..+.+|...|.+++|+|++..+|++++.||.|++||+++++.+..+ .+...|.+++|+
T Consensus 92 ~~dg~i~v~d~~~~~-~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~ 170 (366)
T 3k26_A 92 GSRGIIRIINPITMQ-CIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYD 170 (366)
T ss_dssp ETTCEEEEECTTTCC-EEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEECSTTSCSSCEEEEEEC
T ss_pred cCCCEEEEEEchhce-EeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEecccccccCceeEEEEC
Confidence 999999999999866 477888999999999999944557889999999999999999998887 356789999999
Q ss_pred cCCCEEEEEEcCCeEEEEECCCCeEEEEE----------------------------cCCCCCEEEEEEcCCCCEEEEEe
Q 003236 692 PRLGRILAAAIENYISILDVETQVCRLKL----------------------------QGHKNQVHSVCWNTSGEYLASVS 743 (837)
Q Consensus 692 p~g~~llags~dg~I~iwDl~s~~~~~~l----------------------------~~h~~~V~sl~~spdg~~Lasgs 743 (837)
|++.+|++++.|+.|++||+++++....+ ..|...|.+++|+ +.+|++++
T Consensus 171 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~ 248 (366)
T 3k26_A 171 LLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL--GDLILSKS 248 (366)
T ss_dssp TTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE--TTEEEEEC
T ss_pred CCCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc--CCEEEEEe
Confidence 99999999999999999999976543322 3399999999998 77899888
Q ss_pred -CCeEEEEEcCCCCC-----------ceeEEEeecCCCceEEEEEeCC--CCEEEEEEcCCeEEEEECCCCcE-----EE
Q 003236 744 -DELVRVWSIGSGSK-----------GECIHELSCTGNKFHSCVFHPT--FPSLLVIGCYETLELWNMTENKT-----LT 804 (837)
Q Consensus 744 -Dg~I~IwDl~s~~~-----------~~~i~~~~~~~~~I~sv~fspd--g~~L~sgs~dg~I~IwDl~s~~~-----~~ 804 (837)
|+.|++||+.+... ...+..+..|...|.+++|+|+ +.+|++++.|+.|++||+.+++. ..
T Consensus 249 ~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~ 328 (366)
T 3k26_A 249 CENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVEDPHKAKCTT 328 (366)
T ss_dssp SSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSSEEEEECTTSCEEEEECCSSSGGGCEEEE
T ss_pred cCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCCcEEEEEecCCcEEEEECCCCCCccccceE
Confidence 99999999987532 1347778888999999999999 99999999999999999998752 25
Q ss_pred eccC--CCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 003236 805 LSAH--DKLVSSLAASTVNGMVASASHDKCVKIWK 837 (837)
Q Consensus 805 l~~h--~~~V~sla~spdg~~LaSgs~DG~I~IWd 837 (837)
+..| ...|++++|+|++++|++++.||.|+|||
T Consensus 329 ~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd 363 (366)
T 3k26_A 329 LTHHKCGAAIRQTSFSRDSSILIAVCDDASIWRWD 363 (366)
T ss_dssp ECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred EcccccCCceEEEEeCCCCCeEEEEeCCCEEEEEE
Confidence 6666 79999999999999999999999999997
|
| >3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-35 Score=327.75 Aligned_cols=285 Identities=16% Similarity=0.226 Sum_probs=237.4
Q ss_pred eeEEEEecCCCCCeEEEEEcCCC-CEEEEEECCCcEEEEeCCCCeEEEEec--cCCCCeEEEEEcC-CCCEEEEEeCCCe
Q 003236 545 FTEFQLIPASTSKVESCHFSPDG-KLLATGGHDKKAVLWCTESFTVKSTLE--EHTQWITDVRFSP-SLSRLATSSADRT 620 (837)
Q Consensus 545 ~~~~~~l~~H~~~V~sl~fSpdg-~~Lasgs~Dg~I~VWd~~t~~~~~~l~--~h~~~I~~l~fsp-dg~~Latgs~Dg~ 620 (837)
+..+..+.+|.+.|++++|+|++ ++||+|+.||.|+|||+.+++....+. +|...|.+++|+| ++.+|++++.|+.
T Consensus 63 ~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~ 142 (383)
T 3ei3_B 63 YKLHRTASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIRGA 142 (383)
T ss_dssp CEEEEEECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEEETTTE
T ss_pred cceEEeccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEEeCCCE
Confidence 45567889999999999999999 999999999999999999887776665 6999999999999 7899999999999
Q ss_pred EEEEEcCCCCceeEEeec---cccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeeEEe-cCCCeeEEEEecCCC-
Q 003236 621 VRVWDTENPDYSLRTFTG---HSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK-CQSGATQMRFQPRLG- 695 (837)
Q Consensus 621 I~IWDl~~~~~~~~~~~~---h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~-~~~~i~sl~~sp~g~- 695 (837)
|++||+.+. .+..+.. |...|.+++|+|++. +|++++.|+.|++||++ ++.+..+. +...|.+++|+|++.
T Consensus 143 i~iwd~~~~--~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~i~d~~-~~~~~~~~~h~~~v~~~~~~~~~~~ 218 (383)
T 3ei3_B 143 TTLRDFSGS--VIQVFAKTDSWDYWYCCVDVSVSRQ-MLATGDSTGRLLLLGLD-GHEIFKEKLHKAKVTHAEFNPRCDW 218 (383)
T ss_dssp EEEEETTSC--EEEEEECCCCSSCCEEEEEEETTTT-EEEEEETTSEEEEEETT-SCEEEEEECSSSCEEEEEECSSCTT
T ss_pred EEEEECCCC--ceEEEeccCCCCCCeEEEEECCCCC-EEEEECCCCCEEEEECC-CCEEEEeccCCCcEEEEEECCCCCC
Confidence 999999963 3445544 448899999999977 66799999999999995 56666665 567899999999998
Q ss_pred EEEEEEcCCeEEEEECCC----CeEEEEEcCCCCCEEEEEEcC-CCCEEEEEe-CCeEEEEEcCCCCCceeEEEee----
Q 003236 696 RILAAAIENYISILDVET----QVCRLKLQGHKNQVHSVCWNT-SGEYLASVS-DELVRVWSIGSGSKGECIHELS---- 765 (837)
Q Consensus 696 ~llags~dg~I~iwDl~s----~~~~~~l~~h~~~V~sl~~sp-dg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~---- 765 (837)
.+++++.|+.|++||+++ +.++..+ +|...|.+++|+| ++.+|++++ |+.|+|||++++.....+....
T Consensus 219 ~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~ 297 (383)
T 3ei3_B 219 LMATSSVDATVKLWDLRNIKDKNSYIAEM-PHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQIIIHPHRQF 297 (383)
T ss_dssp EEEEEETTSEEEEEEGGGCCSTTCEEEEE-ECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTSCSEEEECCBCCC
T ss_pred EEEEEeCCCEEEEEeCCCCCcccceEEEe-cCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCcccccccccccccc
Confidence 899999999999999997 6677666 5999999999999 999999999 9999999999875433322111
Q ss_pred cCC----------CceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE-Eecc--CCCCeeEEEEeCCCCEEEEEECCCc
Q 003236 766 CTG----------NKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSA--HDKLVSSLAASTVNGMVASASHDKC 832 (837)
Q Consensus 766 ~~~----------~~I~sv~fspdg~~L~sgs~dg~I~IwDl~s~~~~-~l~~--h~~~V~sla~spdg~~LaSgs~DG~ 832 (837)
.+. ..+..++|+|++.+ +++.|+.|+|||+.+++.+ .+.. |...+.+++|+|++++|++|+ ||.
T Consensus 298 ~~~~~~~~~~~p~~~~~~~~~s~dg~~--s~s~d~~i~iwd~~~~~~~~~l~~~~~~~~~~~~~~s~~g~~l~s~s-d~~ 374 (383)
T 3ei3_B 298 QHLTPIKATWHPMYDLIVAGRYPDDQL--LLNDKRTIDIYDANSGGLVHQLRDPNAAGIISLNKFSPTGDVLASGM-GFN 374 (383)
T ss_dssp TTSCCCCCEECSSSSEEEEECBCCTTT--CTTCCCCEEEEETTTCCEEEEECBTTBCSCCCEEEECTTSSEEEEEE-TTE
T ss_pred ccccceEEeccCCCCceEEEecCCccc--ccCCCCeEEEEecCCCceeeeecCCCCCceEEEEEEecCccEEEEec-CCc
Confidence 111 33445666666665 6678999999999999887 5544 567888889999999999997 999
Q ss_pred EEEeC
Q 003236 833 VKIWK 837 (837)
Q Consensus 833 I~IWd 837 (837)
|+|||
T Consensus 375 i~iw~ 379 (383)
T 3ei3_B 375 ILIWN 379 (383)
T ss_dssp EEEEE
T ss_pred EEEEe
Confidence 99996
|
| >3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-35 Score=322.07 Aligned_cols=287 Identities=15% Similarity=0.199 Sum_probs=241.9
Q ss_pred EEecCCCCCeEEEEEcCCCCEE-EEEEC---CCcEEEEeCCCCeEEEEe-ccCCCCeEEEEEcCC---CCEEEEEeCCCe
Q 003236 549 QLIPASTSKVESCHFSPDGKLL-ATGGH---DKKAVLWCTESFTVKSTL-EEHTQWITDVRFSPS---LSRLATSSADRT 620 (837)
Q Consensus 549 ~~l~~H~~~V~sl~fSpdg~~L-asgs~---Dg~I~VWd~~t~~~~~~l-~~h~~~I~~l~fspd---g~~Latgs~Dg~ 620 (837)
..+.+|.+.|++++|+|++..| ++|+. |+.|+|||+.+++..... ..|...|.+++|+|+ +.+|++++.||.
T Consensus 12 ~~~~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~ 91 (357)
T 3i2n_A 12 HIQKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATSLQQRYLATGDFGGN 91 (357)
T ss_dssp EEEEECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEEEEEESSCEEEEECTTCCTTTCCEEEEETTSC
T ss_pred hhccCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccceeeecccCcEEEEEEcCCCCCCceEEEecCCCe
Confidence 4557899999999999999655 56665 899999999988776443 379999999999998 699999999999
Q ss_pred EEEEEcCCCCceeEEeeccccceEEEEE------cCCCCeEEEEEeCCCcEEEEECCCCe-eeeEEec-----CCCeeEE
Q 003236 621 VRVWDTENPDYSLRTFTGHSTTVMSLDF------HPSKEDLLCSCDNNSEIRYWSINNGS-CAGVFKC-----QSGATQM 688 (837)
Q Consensus 621 I~IWDl~~~~~~~~~~~~h~~~V~sl~f------spdg~~llasgs~Dg~I~vwDl~t~~-~i~~~~~-----~~~i~sl 688 (837)
|++||+.++...+..+.+|...|.+++| +|++. +|++++.|+.|++||+++++ .+..+.. ...+.++
T Consensus 92 i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~-~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~ 170 (357)
T 3i2n_A 92 LHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAP-EIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRDCWTV 170 (357)
T ss_dssp EEEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCC-EEEEEETTSCEEEECTTSCSSCSEEECCCTTSCCCCEEEE
T ss_pred EEEEeCCCCCccEEEEEecccceEEEeeccccccCCCcc-EEEEEeCCCeEEEEeCCCCCCcceeccccCCCCCCceEEE
Confidence 9999999877568888999999999965 56665 66799999999999999887 5666653 2268888
Q ss_pred E----EecCCCEEEEEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEcC---CCCEEEEEe-CCeEEEEEcCCCCCcee
Q 003236 689 R----FQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNT---SGEYLASVS-DELVRVWSIGSGSKGEC 760 (837)
Q Consensus 689 ~----~sp~g~~llags~dg~I~iwDl~s~~~~~~l~~h~~~V~sl~~sp---dg~~Lasgs-Dg~I~IwDl~s~~~~~~ 760 (837)
. |++++..+++++.|+.|++||+++++.... ..|...|.+++|+| ++.+|++++ |+.|++||++++.....
T Consensus 171 ~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~ 249 (357)
T 3i2n_A 171 AFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRWE-TNIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPTKG 249 (357)
T ss_dssp EEECCCC-CCCEEEEEETTSEEEEEETTTTEEEEE-EECSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEEETTTE
T ss_pred EEEeccCCCCCEEEEEccCCeEEEEECccCceeee-cCCCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCCcccc
Confidence 8 678999999999999999999999987555 45889999999999 899999998 99999999987643222
Q ss_pred E--EEeecCCCceEEEEEeCCCC-EEEEEEcCCeEEEEECCCCc--------------------EEEeccCCCCeeEEEE
Q 003236 761 I--HELSCTGNKFHSCVFHPTFP-SLLVIGCYETLELWNMTENK--------------------TLTLSAHDKLVSSLAA 817 (837)
Q Consensus 761 i--~~~~~~~~~I~sv~fspdg~-~L~sgs~dg~I~IwDl~s~~--------------------~~~l~~h~~~V~sla~ 817 (837)
+ ..+..|...|.+++|+|++. +|++++.|+.|++||+..+. ...+..|...|++++|
T Consensus 250 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~ 329 (357)
T 3i2n_A 250 FASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPISSLDW 329 (357)
T ss_dssp EEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECCSSCEEEEEE
T ss_pred eeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCccccccccceeeccccCCCCeeEEEE
Confidence 2 24458899999999999998 89999999999999987532 2267789999999999
Q ss_pred eCCCCEEE-EEECCCcEEEeC
Q 003236 818 STVNGMVA-SASHDKCVKIWK 837 (837)
Q Consensus 818 spdg~~La-Sgs~DG~I~IWd 837 (837)
+|++++|+ +++.||.|+|||
T Consensus 330 s~~~~~l~~s~~~d~~i~iw~ 350 (357)
T 3i2n_A 330 SPDKRGLCVCSSFDQTVRVLI 350 (357)
T ss_dssp CSSSTTEEEEEETTSEEEEEE
T ss_pred cCCCCeEEEEecCCCcEEEEE
Confidence 99999888 899999999996
|
| >1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.1e-35 Score=326.64 Aligned_cols=278 Identities=17% Similarity=0.251 Sum_probs=245.7
Q ss_pred cCCCCCeEEEEEcCCCC-EEEEEECCCcEEEEeC----CCCe------EEEEecc----------CCCCeEEEEEcCCCC
Q 003236 552 PASTSKVESCHFSPDGK-LLATGGHDKKAVLWCT----ESFT------VKSTLEE----------HTQWITDVRFSPSLS 610 (837)
Q Consensus 552 ~~H~~~V~sl~fSpdg~-~Lasgs~Dg~I~VWd~----~t~~------~~~~l~~----------h~~~I~~l~fspdg~ 610 (837)
..|.+.|++++|+|+++ +||+|+.||.|+|||+ .+++ ....+.. |.+.|++++|+|+++
T Consensus 42 ~~~~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~ 121 (425)
T 1r5m_A 42 IVKLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSHDGN 121 (425)
T ss_dssp EEECSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEEECTTSS
T ss_pred eeccCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEEEcCCCC
Confidence 45678999999999999 9999999999999999 8877 4555544 688999999999999
Q ss_pred EEEEEeCCCeEEEEEcCCCCceeEEeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeeEEecCCC------
Q 003236 611 RLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSG------ 684 (837)
Q Consensus 611 ~Latgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~~~~------ 684 (837)
+|++++.||.|++||.. + ..+..+..|...|.+++|+|++. +|++++.|+.|++||+.+++.+..+.....
T Consensus 122 ~l~~~~~dg~i~i~~~~-~-~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~ 198 (425)
T 1r5m_A 122 SIVTGVENGELRLWNKT-G-ALLNVLNFHRAPIVSVKWNKDGT-HIISMDVENVTILWNVISGTVMQHFELKETGGSSIN 198 (425)
T ss_dssp EEEEEETTSCEEEEETT-S-CEEEEECCCCSCEEEEEECTTSS-EEEEEETTCCEEEEETTTTEEEEEECCC--------
T ss_pred EEEEEeCCCeEEEEeCC-C-CeeeeccCCCccEEEEEECCCCC-EEEEEecCCeEEEEECCCCcEEEEeeccccCcccee
Confidence 99999999999999933 3 35788889999999999999977 566888899999999999998888775433
Q ss_pred ----------eeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcC
Q 003236 685 ----------ATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIG 753 (837)
Q Consensus 685 ----------i~sl~~sp~g~~llags~dg~I~iwDl~s~~~~~~l~~h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~ 753 (837)
+.++.|+++ +.+++++.++.|++||+++++.+..+..|...|.+++|+|++.+|++++ |+.|++||++
T Consensus 199 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~ 277 (425)
T 1r5m_A 199 AENHSGDGSLGVDVEWVDD-DKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGG 277 (425)
T ss_dssp -------CCCBSCCEEEET-TEEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEECSS
T ss_pred eccccCCcceeeEEEEcCC-CEEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCCCEEEEEcCCCEEEEEECC
Confidence 889999987 6689999999999999999998889999999999999999999999999 9999999998
Q ss_pred CCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE-EeccCCCCeeEEEEeCCCCEEEEEECCCc
Q 003236 754 SGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKC 832 (837)
Q Consensus 754 s~~~~~~i~~~~~~~~~I~sv~fspdg~~L~sgs~dg~I~IwDl~s~~~~-~l~~h~~~V~sla~spdg~~LaSgs~DG~ 832 (837)
++ ..+..+..|...|.+++|+|++ .|++++.|+.|++||+.+++.+ .+..|...|.+++|+|++++|++++.||.
T Consensus 278 ~~---~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~ 353 (425)
T 1r5m_A 278 NG---NSQNCFYGHSQSIVSASWVGDD-KVISCSMDGSVRLWSLKQNTLLALSIVDGVPIFAGRISQDGQKYAVAFMDGQ 353 (425)
T ss_dssp SB---SCSEEECCCSSCEEEEEEETTT-EEEEEETTSEEEEEETTTTEEEEEEECTTCCEEEEEECTTSSEEEEEETTSC
T ss_pred CC---ccceEecCCCccEEEEEECCCC-EEEEEeCCCcEEEEECCCCcEeEecccCCccEEEEEEcCCCCEEEEEECCCe
Confidence 87 5667777889999999999999 9999999999999999999877 66789999999999999999999999999
Q ss_pred EEEeC
Q 003236 833 VKIWK 837 (837)
Q Consensus 833 I~IWd 837 (837)
|+|||
T Consensus 354 i~i~~ 358 (425)
T 1r5m_A 354 VNVYD 358 (425)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 99996
|
| >3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-36 Score=334.16 Aligned_cols=285 Identities=15% Similarity=0.193 Sum_probs=230.9
Q ss_pred EecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCC--eEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcC
Q 003236 550 LIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESF--TVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTE 627 (837)
Q Consensus 550 ~l~~H~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~--~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~ 627 (837)
.+..|.++|++++|+|++++||+|+.|+.|+|||+.++ +.+..+.+|...|.+++|+|++++|++++.|++|+|||+.
T Consensus 6 ~~~~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~ 85 (377)
T 3dwl_C 6 VLHILPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKR 85 (377)
T ss_dssp EEEECSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC---
T ss_pred eEecCCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCceEEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcC
Confidence 34557789999999999999999999999999999988 7788899999999999999999999999999999999999
Q ss_pred CCC--ceeEEeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCe---eeeEEe--cCCCeeEEEEecCCCEEEEE
Q 003236 628 NPD--YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS---CAGVFK--CQSGATQMRFQPRLGRILAA 700 (837)
Q Consensus 628 ~~~--~~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~---~i~~~~--~~~~i~sl~~sp~g~~llag 700 (837)
++. .....+.+|...|.+++|+|++. +|++++.|+.|++||+++++ +...+. +...|.+++|+|++.+|+++
T Consensus 86 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~ 164 (377)
T 3dwl_C 86 PDGTWKQTLVLLRLNRAATFVRWSPNED-KFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNVLLAAG 164 (377)
T ss_dssp ---CCCCEEECCCCSSCEEEEECCTTSS-CCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECTTSSEEEEE
T ss_pred CCCceeeeeEecccCCceEEEEECCCCC-EEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcCCCCEEEEE
Confidence 865 23567778999999999999876 56688899999999999877 355555 46789999999999999999
Q ss_pred EcCCeEEEEECC------------------CCeEEEEEcCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCc-ee
Q 003236 701 AIENYISILDVE------------------TQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKG-EC 760 (837)
Q Consensus 701 s~dg~I~iwDl~------------------s~~~~~~l~~h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~-~~ 760 (837)
+.|+.|++||++ .++++..+ +|...|.+++|+|++++|++++ |+.|+|||+.++... ..
T Consensus 165 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~ 243 (377)
T 3dwl_C 165 CADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSGNALAYAGHDSSVTIAYPSAPEQPPRA 243 (377)
T ss_dssp ESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECTTSSCEEEEETTTEEC-CEECSTTSCEEE
T ss_pred eCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEECCCCCEEEEEeCCCcEEEEECCCCCCccee
Confidence 999999999985 35566667 8999999999999999999998 999999999987431 12
Q ss_pred EEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCc---------------------------------------
Q 003236 761 IHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENK--------------------------------------- 801 (837)
Q Consensus 761 i~~~~~~~~~I~sv~fspdg~~L~sgs~dg~I~IwDl~s~~--------------------------------------- 801 (837)
+..+..|...|.+++|+|++.+|++++.++.+ +|+.....
T Consensus 244 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (377)
T 3dwl_C 244 LITVKLSQLPLRSLLWANESAIVAAGYNYSPI-LLQGNESGWAHTRDLDAGTSKTSFTHTGNTGEGREEEGPVSFTALRS 322 (377)
T ss_dssp CCCEECSSSCEEEEEEEETTEEEEEESSSSEE-EECCCC---CCSBCCCSCCCCCCBSSSSSBCCCCCC-----------
T ss_pred eEeecCCCCceEEEEEcCCCCEEEEEcCCcEE-EEEeCCCceEEEeeecccccccccccccccccccccccccccccccc
Confidence 67788899999999999999988777655555 77664211
Q ss_pred EE--------------EeccCCCCeeEEEEeCCC-C---EEEEEECCCcEEEeC
Q 003236 802 TL--------------TLSAHDKLVSSLAASTVN-G---MVASASHDKCVKIWK 837 (837)
Q Consensus 802 ~~--------------~l~~h~~~V~sla~spdg-~---~LaSgs~DG~I~IWd 837 (837)
.+ ....|...|+++++.+.. . .|+||+.||.|+|||
T Consensus 323 ~~~~~~~~g~~~~~~~~~~~H~~~i~~~~~~~~~~~~~~~~~s~g~Dg~i~iWd 376 (377)
T 3dwl_C 323 TFRNMDLKGSSQSISSLPTVHQNMIATLRPYAGTPGNITAFTSSGTDGRVVLWT 376 (377)
T ss_dssp --------------CCCSSSCSSCEEEEEEEEEETTEEEEEEEEETTSEEEEEC
T ss_pred cccchhhccccccccccCccccceeEEEeccCCCCCceEEEEeecCCCcEEEec
Confidence 00 001299999999976543 3 699999999999997
|
| >2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-34 Score=315.04 Aligned_cols=279 Identities=15% Similarity=0.231 Sum_probs=231.3
Q ss_pred CCCeEEcccCCCceEEeecCCCCCCCCccccccccCCCeeeeEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEeC
Q 003236 505 MDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCT 584 (837)
Q Consensus 505 ~~~~v~~Gs~D~~v~~w~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~H~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~ 584 (837)
...++++|+.|++|++|........ +........+.+|...|++++|+|++.+|++|+.|++|+|||+
T Consensus 38 d~~~l~sgs~D~~v~iWd~~~~~~~------------~~~~~~~~~l~~h~~~V~~~~~~~~~~~l~s~s~D~~v~lwd~ 105 (343)
T 2xzm_R 38 DSPVLISGSRDKTVMIWKLYEEEQN------------GYFGIPHKALTGHNHFVSDLALSQENCFAISSSWDKTLRLWDL 105 (343)
T ss_dssp CCCEEEEEETTSCEEEEEECSSCCS------------SBSEEEEEEECCCSSCEEEEEECSSTTEEEEEETTSEEEEEET
T ss_pred CCCEEEEEcCCCEEEEEECCcCCcc------------cccccccchhccCCCceEEEEECCCCCEEEEEcCCCcEEEEEC
Confidence 4578999999999999976543211 1122346678999999999999999999999999999999999
Q ss_pred CCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeEEe---eccccceEEEEEcCCCC--------
Q 003236 585 ESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTF---TGHSTTVMSLDFHPSKE-------- 653 (837)
Q Consensus 585 ~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~~~~~~~~~---~~h~~~V~sl~fspdg~-------- 653 (837)
.+++.+..+.+|...|.+++|+|++++|++++.|++|++||+... . .... .+|...|.+++|+|++.
T Consensus 106 ~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~-~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 183 (343)
T 2xzm_R 106 RTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGE-C-KFSSAEKENHSDWVSCVRYSPIMKSANKVQPF 183 (343)
T ss_dssp TSSCEEEEEECCCSCEEEEEECSSTTEEEEEETTSCEEEEESSSC-E-EEECCTTTSCSSCEEEEEECCCCCSCSCCCSS
T ss_pred CCCcEEEEEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccCC-c-eeeeecccCCCceeeeeeeccccccccccCCC
Confidence 999999999999999999999999999999999999999999842 2 2222 37889999999999863
Q ss_pred -eEEEEEeCCCcEEEEECCCCeeeeEEe-cCCCeeEEEEecCCCEEEEEEcCCeEEEEECCC-CeEEEEEcCCCCCEEEE
Q 003236 654 -DLLCSCDNNSEIRYWSINNGSCAGVFK-CQSGATQMRFQPRLGRILAAAIENYISILDVET-QVCRLKLQGHKNQVHSV 730 (837)
Q Consensus 654 -~llasgs~Dg~I~vwDl~t~~~i~~~~-~~~~i~sl~~sp~g~~llags~dg~I~iwDl~s-~~~~~~l~~h~~~V~sl 730 (837)
.++++++.|+.|++||.. ......+. +...|.+++|+|++.+|++++.|+.|++||+.. ......+. +...|.++
T Consensus 184 ~~~l~s~~~d~~i~iwd~~-~~~~~~~~~h~~~v~~~~~s~~g~~l~sgs~dg~v~iwd~~~~~~~~~~~~-~~~~v~~v 261 (343)
T 2xzm_R 184 APYFASVGWDGRLKVWNTN-FQIRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWDILNLTYPQREFD-AGSTINQI 261 (343)
T ss_dssp CCEEEEEETTSEEEEEETT-TEEEEEEECCSSCEEEEEECTTSSEEEEEETTCEEEEEESSCCSSCSEEEE-CSSCEEEE
T ss_pred CCEEEEEcCCCEEEEEcCC-CceeEEEcCccccceEEEECCCCCEEEEEcCCCeEEEEECCCCcccceeec-CCCcEEEE
Confidence 478899999999999954 55555554 467899999999999999999999999999954 33444443 55679999
Q ss_pred EEcCCCCEEEEEeCCeEEEEEcCCCCCceeEEEee-----------cCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCC
Q 003236 731 CWNTSGEYLASVSDELVRVWSIGSGSKGECIHELS-----------CTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTE 799 (837)
Q Consensus 731 ~~spdg~~LasgsDg~I~IwDl~s~~~~~~i~~~~-----------~~~~~I~sv~fspdg~~L~sgs~dg~I~IwDl~s 799 (837)
+|+|++.+++++.|+.|++||+.+..... +..+. +|...+.+++|+|++.+|++++.|+.|++|++.+
T Consensus 262 ~~sp~~~~la~~~d~~v~iw~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~Dg~v~~w~~~~ 340 (343)
T 2xzm_R 262 AFNPKLQWVAVGTDQGVKIFNLMTQSKAP-VCTIEAEPITKAEGQKGKNPQCTSLAWNALGKKLFAGFTDGVIRTFSFET 340 (343)
T ss_dssp EECSSSCEEEEEESSCEEEEESSSCCSCS-EEECCCCSGGGBTTBCCSCCCEEEEEECSSSCCEEEEETTSEEEEEEEEE
T ss_pred EECCCCCEEEEECCCCEEEEEeCCCCCCc-eEEeecCcchhhhhhcCCCCceEEEEECCCCCeEEEecCCceEEEEEEEc
Confidence 99999999988889999999998764322 22222 5677899999999999999999999999999865
Q ss_pred C
Q 003236 800 N 800 (837)
Q Consensus 800 ~ 800 (837)
+
T Consensus 341 g 341 (343)
T 2xzm_R 341 S 341 (343)
T ss_dssp E
T ss_pred c
Confidence 4
|
| >4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-35 Score=326.57 Aligned_cols=244 Identities=14% Similarity=0.260 Sum_probs=207.5
Q ss_pred ecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEE----EeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEc
Q 003236 551 IPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKS----TLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDT 626 (837)
Q Consensus 551 l~~H~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~~~----~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl 626 (837)
..+|...|++++|+|++. +++++.||+|+|||+.+++... ...+|...|++++|+|++++|++++.|++|+|||+
T Consensus 90 ~~~~~~~V~~~~~s~d~~-~l~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~ 168 (357)
T 4g56_B 90 GVQTEAGVTDVAWVSEKG-ILVASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDL 168 (357)
T ss_dssp EEECSSCEEEEEEETTTE-EEEEETTSCEEEC--------CCCCEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEET
T ss_pred cCCCCCCEEEEEEcCCCC-EEEEECCCEEEEeeccccceeEEEeeccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEEC
Confidence 447889999999999985 4567889999999998876543 34579999999999999999999999999999999
Q ss_pred CCCCceeEEeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeeEEec---CCCeeEEEEecCC-CEEEEEEc
Q 003236 627 ENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC---QSGATQMRFQPRL-GRILAAAI 702 (837)
Q Consensus 627 ~~~~~~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~---~~~i~sl~~sp~g-~~llags~ 702 (837)
.++. .+..+.+|...|.+++|++++..++++++.|+.|++||+++++++..+.. ...+.+++|+|++ .+|++++.
T Consensus 169 ~~~~-~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~ 247 (357)
T 4g56_B 169 SQKA-VLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDE 247 (357)
T ss_dssp TTTE-EEEEECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEES
T ss_pred CCCc-EEEEEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceeeeeeeccccccccchhhhhcccceEEEeec
Confidence 9865 57888999999999999999888888999999999999999887766543 4568999999975 56778899
Q ss_pred CCeEEEEECCCCeEEEEEcCCCCCEEEEEEcCCC-CEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeC-C
Q 003236 703 ENYISILDVETQVCRLKLQGHKNQVHSVCWNTSG-EYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHP-T 779 (837)
Q Consensus 703 dg~I~iwDl~s~~~~~~l~~h~~~V~sl~~spdg-~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fsp-d 779 (837)
|+.|++||+++++++..+.+|...|++++|+|++ .+|++++ |+.|+|||++++ +++.. ..|...|++++|+| +
T Consensus 248 d~~i~~wd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~---~~~~~-~~H~~~V~~vafsP~d 323 (357)
T 4g56_B 248 TGNVSLVNIKNPDSAQTSAVHSQNITGLAYSYHSSPFLASISEDCTVAVLDADFS---EVFRD-LSHRDFVTGVAWSPLD 323 (357)
T ss_dssp SSCEEEEESSCGGGCEEECCCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTSC---EEEEE-CCCSSCEEEEEECSSS
T ss_pred ccceeEEECCCCcEeEEEeccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCC---cEeEE-CCCCCCEEEEEEeCCC
Confidence 9999999999999999999999999999999987 5788888 999999999887 55544 47899999999998 7
Q ss_pred CCEEEEEEcCCeEEEEECCCC
Q 003236 780 FPSLLVIGCYETLELWNMTEN 800 (837)
Q Consensus 780 g~~L~sgs~dg~I~IwDl~s~ 800 (837)
+.+|++++.|++|++||+.+.
T Consensus 324 ~~~l~s~s~Dg~v~iW~~~~~ 344 (357)
T 4g56_B 324 HSKFTTVGWDHKVLHHHLPSE 344 (357)
T ss_dssp TTEEEEEETTSCEEEEECC--
T ss_pred CCEEEEEcCCCeEEEEECCCC
Confidence 899999999999999998654
|
| >3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.9e-35 Score=331.38 Aligned_cols=285 Identities=14% Similarity=0.240 Sum_probs=237.1
Q ss_pred eEEEEe-cCCCCCeEEEEEcC-CCCEEEEEECCCcEEEEeCCC---Ce---EEEEeccCCCCeEEEEEcCCCCEEEEEeC
Q 003236 546 TEFQLI-PASTSKVESCHFSP-DGKLLATGGHDKKAVLWCTES---FT---VKSTLEEHTQWITDVRFSPSLSRLATSSA 617 (837)
Q Consensus 546 ~~~~~l-~~H~~~V~sl~fSp-dg~~Lasgs~Dg~I~VWd~~t---~~---~~~~l~~h~~~I~~l~fspdg~~Latgs~ 617 (837)
..+..+ .+|.+.|++++|+| ++++||+|+.||+|+|||+.+ +. ....+ .|...|++++|+|++.+|++++.
T Consensus 53 ~~~~~~~~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~l~s~s~ 131 (437)
T 3gre_A 53 KLIATLMENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTY-DCSSTVTQITMIPNFDAFAVSSK 131 (437)
T ss_dssp CEEEEECTTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEE-ECSSCEEEEEECTTSSEEEEEET
T ss_pred eEEeeeccCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccceeeec-cCCCCEEEEEEeCCCCEEEEEeC
Confidence 345667 89999999999999 999999999999999999876 33 23333 59999999999999999999999
Q ss_pred CCeEEEEEcC---CCCceeEEeec------------cccceEEEE--EcCCCCeEEEEEeCCCcEEEEECCCCeeeeEEe
Q 003236 618 DRTVRVWDTE---NPDYSLRTFTG------------HSTTVMSLD--FHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK 680 (837)
Q Consensus 618 Dg~I~IWDl~---~~~~~~~~~~~------------h~~~V~sl~--fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~ 680 (837)
||+|++||+. ++. ....+.. +...+.++. +++++ .++++++.|+.|++||+++++++..+.
T Consensus 132 dg~i~vwd~~~~~~~~-~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~d~~i~iwd~~~~~~~~~~~ 209 (437)
T 3gre_A 132 DGQIIVLKVNHYQQES-EVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEK-SLLVALTNLSRVIIFDIRTLERLQIIE 209 (437)
T ss_dssp TSEEEEEEEEEEEETT-EEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSC-EEEEEEETTSEEEEEETTTCCEEEEEE
T ss_pred CCEEEEEEeccccCCc-eeeccccceeEEEEccCcccccCceEEEEEEcCCC-CEEEEEeCCCeEEEEeCCCCeeeEEEc
Confidence 9999999995 333 2222222 445566666 44564 477799999999999999999998887
Q ss_pred c---CCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEc-CCCCCEEEEEEcC----CCCEEEEEe-CCeEEEEE
Q 003236 681 C---QSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQ-GHKNQVHSVCWNT----SGEYLASVS-DELVRVWS 751 (837)
Q Consensus 681 ~---~~~i~sl~~sp~g~~llags~dg~I~iwDl~s~~~~~~l~-~h~~~V~sl~~sp----dg~~Lasgs-Dg~I~IwD 751 (837)
. ...|.+++|+|++.+|++++.|+.|++||+++++++..+. .|...|.+++|+| ++.+|++++ |+.|+|||
T Consensus 210 ~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd 289 (437)
T 3gre_A 210 NSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWN 289 (437)
T ss_dssp CCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEEBCTTCEEEEEEEECTTTCTTEEEEEEESTTEEEEEEE
T ss_pred cCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEEEEEecCCCCceEEEEeccccCCCccEEEEEcCCCcEEEEE
Confidence 4 5789999999999999999999999999999999999886 7888999996664 677999998 99999999
Q ss_pred cCCCCCceeEEEeec--------------------------CCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE-E
Q 003236 752 IGSGSKGECIHELSC--------------------------TGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-T 804 (837)
Q Consensus 752 l~s~~~~~~i~~~~~--------------------------~~~~I~sv~fspdg~~L~sgs~dg~I~IwDl~s~~~~-~ 804 (837)
++++ .++..+.. |...|.+++|+ ++.+|++++.|+.|++||+.+++.. .
T Consensus 290 ~~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~~l~s~~~d~~i~~wd~~~~~~~~~ 365 (437)
T 3gre_A 290 FVKG---HCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-NDKILLTDEATSSIVMFSLNELSSSKA 365 (437)
T ss_dssp TTTT---EEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTEEEEEEGGGTEEEEEETTCGGGCEE
T ss_pred cCCC---cEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-CceEEEecCCCCeEEEEECCCcccceE
Confidence 9987 55555443 44568889999 7789999999999999999887754 2
Q ss_pred ecc-------------------------------------CCCCeeEEEEeCC--CCEEEEEECCCcEEEeC
Q 003236 805 LSA-------------------------------------HDKLVSSLAASTV--NGMVASASHDKCVKIWK 837 (837)
Q Consensus 805 l~~-------------------------------------h~~~V~sla~spd--g~~LaSgs~DG~I~IWd 837 (837)
+.+ |...|++++|+++ +.+|++|+.||.|+||+
T Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~i~~~~~~~~~~l~s~~~dG~I~iw~ 437 (437)
T 3gre_A 366 VISPSRFSDVFIPTQVTANLTMLLRKMKRTSTHSVDDSLYHHDIINSISTCEVDETPLLVACDNSGLIGIFQ 437 (437)
T ss_dssp EECC--CCCEEEEEEEETTEEEEEEECC-------------CCCEEEEEEEESSSSEEEEEEETTSCEEEEC
T ss_pred EecccccCceEEEEEeecceEEEEEecccccccccCcccccccceeeEeeeccCCceEEEEEcCCceEEEeC
Confidence 322 8999999999998 77999999999999996
|
| >3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-33 Score=311.70 Aligned_cols=282 Identities=21% Similarity=0.346 Sum_probs=231.6
Q ss_pred CCCeEEcccCCCceEEeecCCCCCCCCccccccccCCCeeeeEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEeC
Q 003236 505 MDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCT 584 (837)
Q Consensus 505 ~~~~v~~Gs~D~~v~~w~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~H~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~ 584 (837)
...++++|+.|+.|++|..... ..........+|...|++++|+|++++||+|+.|++|+|||+
T Consensus 27 ~g~~las~~~D~~i~iw~~~~~----------------~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~~v~iw~~ 90 (345)
T 3fm0_A 27 AGTLLASCGGDRRIRIWGTEGD----------------SWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDATTCIWKK 90 (345)
T ss_dssp TSSCEEEEETTSCEEEEEEETT----------------EEEEEEEECSSCSSCEEEEEECTTSSEEEEEETTSCEEEEEE
T ss_pred CCCEEEEEcCCCeEEEEEcCCC----------------cceeeeeeccccCCcEEEEEECCCCCEEEEEECCCcEEEEEc
Confidence 3478999999999999954322 111122334789999999999999999999999999999998
Q ss_pred CCC--eEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCc--eeEEeeccccceEEEEEcCCCCeEEEEEe
Q 003236 585 ESF--TVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDY--SLRTFTGHSTTVMSLDFHPSKEDLLCSCD 660 (837)
Q Consensus 585 ~t~--~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~~~~--~~~~~~~h~~~V~sl~fspdg~~llasgs 660 (837)
... +++..+.+|...|.+++|+|++++|++|+.|++|++||+.+... .+..+.+|...|.+++|+|++. +|++++
T Consensus 91 ~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~-~l~s~s 169 (345)
T 3fm0_A 91 NQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQE-LLASAS 169 (345)
T ss_dssp CCC-EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEEEEECCCCSCEEEEEECSSSS-CEEEEE
T ss_pred cCCCeEEEEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEEEEecCcCCCeEEEEECCCCC-EEEEEe
Confidence 766 46788999999999999999999999999999999999987542 3567889999999999999976 666999
Q ss_pred CCCcEEEEECCCCeee--eEEe-cCCCeeEEEEecCCCEEEEEEcCCeEEEEECCC---------------CeEEEEEcC
Q 003236 661 NNSEIRYWSINNGSCA--GVFK-CQSGATQMRFQPRLGRILAAAIENYISILDVET---------------QVCRLKLQG 722 (837)
Q Consensus 661 ~Dg~I~vwDl~t~~~i--~~~~-~~~~i~sl~~sp~g~~llags~dg~I~iwDl~s---------------~~~~~~l~~ 722 (837)
.|+.|++||++++... ..+. +...|.+++|+|++.+|++++.|+.|++||... ..++..+.+
T Consensus 170 ~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (345)
T 3fm0_A 170 YDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSG 249 (345)
T ss_dssp TTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEEECTTCTTCCCCC---CEEEEEEEECS
T ss_pred CCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEeCCCeEEEeccccCCCCccceeeccCCccceeEEecC
Confidence 9999999999887643 3443 456799999999999999999999999999632 244556665
Q ss_pred -CCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCc------eeEEEeecCCCceEEEEEeCCCC-EEEEEEcCCeEE
Q 003236 723 -HKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKG------ECIHELSCTGNKFHSCVFHPTFP-SLLVIGCYETLE 793 (837)
Q Consensus 723 -h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~------~~i~~~~~~~~~I~sv~fspdg~-~L~sgs~dg~I~ 793 (837)
|...|.+++|++++.+|++++ |+.|++|+....... ...+....|...|.+++|+|++. +|++++.|+.|+
T Consensus 250 ~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~laS~s~Dg~v~ 329 (345)
T 3fm0_A 250 FHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCVAWNPKEPGLLASCSDDGEVA 329 (345)
T ss_dssp SCSSCEEEEEECTTTCCEEEEETTSCEEEEEECTTSCTTSCCEEEEEEETTSSSSCEEEEEECSSSTTEEEEEETTSCEE
T ss_pred CCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCcceeeEEEEeeecccccCcEeEeEEeCCCceEEEEcCCCCcEE
Confidence 889999999999999999998 999999998764321 11223457889999999999984 899999999999
Q ss_pred EEECCCCcEE
Q 003236 794 LWNMTENKTL 803 (837)
Q Consensus 794 IwDl~s~~~~ 803 (837)
+|++.+++..
T Consensus 330 ~W~~~~~~~~ 339 (345)
T 3fm0_A 330 FWKYQRPEGL 339 (345)
T ss_dssp EEEECC----
T ss_pred EEEecCCCCc
Confidence 9999887754
|
| >2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.7e-34 Score=315.60 Aligned_cols=267 Identities=22% Similarity=0.353 Sum_probs=236.7
Q ss_pred CeEEcccCCCceEEeecCCCCCCCCccccccccCCCeeeeEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCC
Q 003236 507 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES 586 (837)
Q Consensus 507 ~~v~~Gs~D~~v~~w~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~H~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t 586 (837)
.++++|+.|++|++|..... .....+..|...|.+++|+|+|.+||+|+.|+.|++|++..
T Consensus 77 ~~l~s~s~Dg~v~vWd~~~~-------------------~~~~~~~~~~~~v~~~~~sp~g~~lasg~~d~~i~v~~~~~ 137 (354)
T 2pbi_B 77 RRIVSSSQDGKVIVWDSFTT-------------------NKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSVYPLTF 137 (354)
T ss_dssp SEEEEEETTSEEEEEETTTC-------------------CEEEEEECSSSCCCEEEECTTSSEEEEESTTSEEEEEECCC
T ss_pred CEEEEEeCCCeEEEEECCCC-------------------CcceEEecCCCCEEEEEECCCCCEEEEeeCCCCEEEEEEec
Confidence 68999999999999965322 23455678889999999999999999999999999999864
Q ss_pred C------eEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeEEeeccccceEEEEEcCCC-CeEEEEE
Q 003236 587 F------TVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSK-EDLLCSC 659 (837)
Q Consensus 587 ~------~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~sl~fspdg-~~llasg 659 (837)
. .....+..|...|.+++|+|++..|++++.|++|++||+.+++ .+..+.+|...|.+++|+|+. ..+|++|
T Consensus 138 ~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~-~~~~~~~h~~~v~~~~~~~~~~g~~l~sg 216 (354)
T 2pbi_B 138 DKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQ-LLQSFHGHGADVLCLDLAPSETGNTFVSG 216 (354)
T ss_dssp CTTCCSGGGCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCC-EEEEEECCSSCEEEEEECCCSSCCEEEEE
T ss_pred cccccccccceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCe-EEEEEcCCCCCeEEEEEEeCCCCCEEEEE
Confidence 3 2345667899999999999999999999999999999999876 478889999999999999863 3578899
Q ss_pred eCCCcEEEEECCCCeeeeEEec-CCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEcCC--CCCEEEEEEcCCC
Q 003236 660 DNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGH--KNQVHSVCWNTSG 736 (837)
Q Consensus 660 s~Dg~I~vwDl~t~~~i~~~~~-~~~i~sl~~sp~g~~llags~dg~I~iwDl~s~~~~~~l~~h--~~~V~sl~~spdg 736 (837)
+.||.|++||+++++++..+.. ...|.+++|+|++..|++++.|+.|++||++....+..+..+ ...+.+++|+|++
T Consensus 217 s~Dg~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~s~~g 296 (354)
T 2pbi_B 217 GCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESIIFGASSVDFSLSG 296 (354)
T ss_dssp ETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTS
T ss_pred eCCCeEEEEECCCCcEEEEecCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCcccceeEEEEeCCC
Confidence 9999999999999999888864 567999999999999999999999999999998887777643 3578999999999
Q ss_pred CEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEE
Q 003236 737 EYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWN 796 (837)
Q Consensus 737 ~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fspdg~~L~sgs~dg~I~IwD 796 (837)
.+|++++ |+.|+|||+.++ ..+..+..|...|.+++|+|++.+|++++.|+.|+||+
T Consensus 297 ~~l~~g~~d~~i~vwd~~~~---~~~~~l~~h~~~v~~l~~spdg~~l~sgs~D~~v~vW~ 354 (354)
T 2pbi_B 297 RLLFAGYNDYTINVWDVLKG---SRVSILFGHENRVSTLRVSPDGTAFCSGSWDHTLRVWA 354 (354)
T ss_dssp SEEEEEETTSCEEEEETTTC---SEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEC
T ss_pred CEEEEEECCCcEEEEECCCC---ceEEEEECCCCcEEEEEECCCCCEEEEEcCCCCEEecC
Confidence 9999999 999999999887 67788889999999999999999999999999999996
|
| >3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.5e-33 Score=317.81 Aligned_cols=300 Identities=17% Similarity=0.263 Sum_probs=259.2
Q ss_pred CCeEEcccCCCceEEeecCCCCCCCCccccccccCCCeeeeEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCC
Q 003236 506 DRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTE 585 (837)
Q Consensus 506 ~~~v~~Gs~D~~v~~w~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~H~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~ 585 (837)
+.++++|+.|+.|++|..... ..+..+.+|.+.|++++|++++ +|++|+.||+|++||+.
T Consensus 132 ~~~l~sgs~dg~i~vwd~~~~-------------------~~~~~~~~h~~~V~~l~~~~~~-~l~s~s~dg~i~vwd~~ 191 (464)
T 3v7d_B 132 DNYVITGADDKMIRVYDSINK-------------------KFLLQLSGHDGGVWALKYAHGG-ILVSGSTDRTVRVWDIK 191 (464)
T ss_dssp TTEEEEEETTSCEEEEETTTT-------------------EEEEEECCCSSCEEEEEECSTT-EEEEEETTSCEEEEETT
T ss_pred CCEEEEEcCCCcEEEEECCCC-------------------cEEEEEeCCCcCEEEEEEcCCC-EEEEEeCCCCEEEEECC
Confidence 368999999999999965432 3466788999999999999988 99999999999999999
Q ss_pred CCeEEEEeccCCCCeEEEEEc--CCCCEEEEEeCCCeEEEEEcCCCCce----------------------eEEeecccc
Q 003236 586 SFTVKSTLEEHTQWITDVRFS--PSLSRLATSSADRTVRVWDTENPDYS----------------------LRTFTGHST 641 (837)
Q Consensus 586 t~~~~~~l~~h~~~I~~l~fs--pdg~~Latgs~Dg~I~IWDl~~~~~~----------------------~~~~~~h~~ 641 (837)
+++.+..+.+|...|.+++|+ +++.+|++++.|++|++||+.+.... +..+.+|..
T Consensus 192 ~~~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (464)
T 3v7d_B 192 KGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMA 271 (464)
T ss_dssp TTEEEEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSS
T ss_pred CCcEEEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccc
Confidence 999999999999999999998 57889999999999999999875432 456778989
Q ss_pred ceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeeEEec-CCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEE
Q 003236 642 TVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKL 720 (837)
Q Consensus 642 ~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~-~~~i~sl~~sp~g~~llags~dg~I~iwDl~s~~~~~~l 720 (837)
.|.++..+ +. ++++++.|+.|++||+++++++..+.. ...+.+++|+|++..+++++.|+.|++||+++++++..+
T Consensus 272 ~v~~~~~~--~~-~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~ 348 (464)
T 3v7d_B 272 SVRTVSGH--GN-IVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTL 348 (464)
T ss_dssp CEEEEEEE--TT-EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEE
T ss_pred eEEEEcCC--CC-EEEEEeCCCeEEEEECCCCcEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEE
Confidence 99888644 34 677999999999999999999988874 567999999999999999999999999999999999999
Q ss_pred cCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCC
Q 003236 721 QGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTE 799 (837)
Q Consensus 721 ~~h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fspdg~~L~sgs~dg~I~IwDl~s 799 (837)
.+|...|.+++|+ +.+|++++ |+.|++||+.+.. ..... .+...+..++|++++.+|++++ |+.|++||+.+
T Consensus 349 ~~h~~~v~~~~~~--~~~l~s~s~dg~v~vwd~~~~~---~~~~~-~~~~~~~~~~~~~~~~~l~~~~-dg~i~iwd~~~ 421 (464)
T 3v7d_B 349 QGHTALVGLLRLS--DKFLVSAAADGSIRGWDANDYS---RKFSY-HHTNLSAITTFYVSDNILVSGS-ENQFNIYNLRS 421 (464)
T ss_dssp CCCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCC---EEEEE-ECTTCCCEEEEEECSSEEEEEE-TTEEEEEETTT
T ss_pred eCCCCcEEEEEEc--CCEEEEEeCCCcEEEEECCCCc---eeeee-cCCCCccEEEEEeCCCEEEEec-CCeEEEEECCC
Confidence 9999999999997 57888888 9999999999863 33333 3566788889999999888888 89999999999
Q ss_pred CcEEE--eccCCCCeeEEEEeCCCCEEEEEECCCcEEEe
Q 003236 800 NKTLT--LSAHDKLVSSLAASTVNGMVASASHDKCVKIW 836 (837)
Q Consensus 800 ~~~~~--l~~h~~~V~sla~spdg~~LaSgs~DG~I~IW 836 (837)
++.+. +..|...|.+++|+ +..++++++.||.+.+|
T Consensus 422 g~~~~~~~~~~~~~v~~v~~~-~~~l~~~~~~~g~~~i~ 459 (464)
T 3v7d_B 422 GKLVHANILKDADQIWSVNFK-GKTLVAAVEKDGQSFLE 459 (464)
T ss_dssp CCEEESCTTTTCSEEEEEEEE-TTEEEEEEEETTEEEEE
T ss_pred CcEEehhhccCCCcEEEEEec-CCEEEEEEEeCCeEEEE
Confidence 99884 56889999999998 44566666778876655
|
| >2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-35 Score=331.07 Aligned_cols=279 Identities=20% Similarity=0.307 Sum_probs=245.1
Q ss_pred CCeEEEEEcCCCC-EEEEE----------ECCCcEEEEeCCCCe---EEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeE
Q 003236 556 SKVESCHFSPDGK-LLATG----------GHDKKAVLWCTESFT---VKSTLEEHTQWITDVRFSPSLSRLATSSADRTV 621 (837)
Q Consensus 556 ~~V~sl~fSpdg~-~Lasg----------s~Dg~I~VWd~~t~~---~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I 621 (837)
..|.+++|+|+++ +||+| +.|+.|+|||+.++. .+..+ .|...|.+++|+|++.+|++++.||.|
T Consensus 13 ~~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~dg~v 91 (416)
T 2pm9_A 13 SRTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIASL-QVDSKFNDLDWSHNNKIIAGALDNGSL 91 (416)
T ss_dssp EESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCSCCC-CCSSCEEEEEECSSSSCEEEEESSSCE
T ss_pred hhcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcEEEEE-ecCCceEEEEECCCCCeEEEEccCCeE
Confidence 3588999999987 99999 889999999998875 33444 588999999999999999999999999
Q ss_pred EEEEcCC---CCceeEEeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCe------eeeEE----ecCCCeeEE
Q 003236 622 RVWDTEN---PDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS------CAGVF----KCQSGATQM 688 (837)
Q Consensus 622 ~IWDl~~---~~~~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~------~i~~~----~~~~~i~sl 688 (837)
++||+.+ +...+..+.+|...|.+++|+|++..+|++++.|+.|++||+.+++ ....+ .+...+.++
T Consensus 92 ~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 171 (416)
T 2pm9_A 92 ELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISL 171 (416)
T ss_dssp EEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCCEE
T ss_pred EEeecccccccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCccccccccccccccccCCCCCeeEE
Confidence 9999987 3346788889999999999999966678899999999999999876 33322 345789999
Q ss_pred EEecC-CCEEEEEEcCCeEEEEECCCCeEEEEEcCC------CCCEEEEEEcCCC-CEEEEEe-CC---eEEEEEcCCCC
Q 003236 689 RFQPR-LGRILAAAIENYISILDVETQVCRLKLQGH------KNQVHSVCWNTSG-EYLASVS-DE---LVRVWSIGSGS 756 (837)
Q Consensus 689 ~~sp~-g~~llags~dg~I~iwDl~s~~~~~~l~~h------~~~V~sl~~spdg-~~Lasgs-Dg---~I~IwDl~s~~ 756 (837)
+|+|+ +..+++++.|+.|++||+++++.+..+..| ...|.+++|+|++ .+|++++ |+ .|++||++++.
T Consensus 172 ~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~ 251 (416)
T 2pm9_A 172 AWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNAN 251 (416)
T ss_dssp EECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTT
T ss_pred EeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCC
Confidence 99999 788999999999999999999999988876 7899999999997 6888888 77 99999999863
Q ss_pred CceeEEEee-cCCCceEEEEEeC-CCCEEEEEEcCCeEEEEECCCCcEE-EeccCCCCeeEEEEeCCC-CEEEEEECCCc
Q 003236 757 KGECIHELS-CTGNKFHSCVFHP-TFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVN-GMVASASHDKC 832 (837)
Q Consensus 757 ~~~~i~~~~-~~~~~I~sv~fsp-dg~~L~sgs~dg~I~IwDl~s~~~~-~l~~h~~~V~sla~spdg-~~LaSgs~DG~ 832 (837)
..+..+. .|...|.+++|+| ++.+|++++.|+.|++||+.+++.+ .+..|...|.+++|+|++ .+|++++.||.
T Consensus 252 --~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~d~~ 329 (416)
T 2pm9_A 252 --TPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFPARGNWCFKTKFAPEAPDLFACASFDNK 329 (416)
T ss_dssp --SCSBCCCSCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSCCEEEEEECSSSCCCCEEECTTCTTEEEECCSSSE
T ss_pred --CCcEEeecCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccceeecCCCCceEEEEECCCCCCEEEEEecCCc
Confidence 3455566 7889999999999 9999999999999999999999877 677999999999999999 89999999999
Q ss_pred EEEeC
Q 003236 833 VKIWK 837 (837)
Q Consensus 833 I~IWd 837 (837)
|+|||
T Consensus 330 i~iw~ 334 (416)
T 2pm9_A 330 IEVQT 334 (416)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 99996
|
| >2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-35 Score=345.09 Aligned_cols=315 Identities=9% Similarity=0.036 Sum_probs=233.8
Q ss_pred CCCeEEcccCCCceEEeecCCCCCCCCccccccccCCCeeeeEEEEecCCCCCeEEEEEcCC------CCEEEEEECCCc
Q 003236 505 MDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPD------GKLLATGGHDKK 578 (837)
Q Consensus 505 ~~~~v~~Gs~D~~v~~w~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~H~~~V~sl~fSpd------g~~Lasgs~Dg~ 578 (837)
...++++++.|++|++|....... ......++.+|.+.|.+|+|+|+ +.+||+|+.||+
T Consensus 172 ~~~~laS~s~D~tI~iWd~~~~~~---------------~~~~~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~Dgt 236 (524)
T 2j04_B 172 HLEMFDKEKHSSCIQIFKMNTSTL---------------HCVKVQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGT 236 (524)
T ss_dssp ----------CEEEEEEEEETTTC---------------CEEEEEEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSC
T ss_pred hhhhhccCCCCceEEEEEccCCCC---------------CceEEEEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCe
Confidence 345678899999999996533210 11123456788999999999997 579999999999
Q ss_pred EEEEeCCCCeE-----------EEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeEEeeccccceEEE-
Q 003236 579 AVLWCTESFTV-----------KSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSL- 646 (837)
Q Consensus 579 I~VWd~~t~~~-----------~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~sl- 646 (837)
|+|||+.++.. ...+.+|...|++++|+++ ..|++|+.||+|++||+.++..+...+.+|...|.+|
T Consensus 237 vrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~-~~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~ 315 (524)
T 2j04_B 237 INFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSP-TTVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVS 315 (524)
T ss_dssp EEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESSS-SEEEEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEE
T ss_pred EEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecCC-CeEEEEeCCCEEEEEECCCCCCceEEeecccccEEEEE
Confidence 99999976532 2467889999999999986 4899999999999999997766667788999999999
Q ss_pred -EEcCCCCeEEEEEeCCCcEEEEECCCCeeeeEEecC---CCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEcC
Q 003236 647 -DFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ---SGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQG 722 (837)
Q Consensus 647 -~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~~---~~i~sl~~sp~g~~llags~dg~I~iwDl~s~~~~~~l~~ 722 (837)
+|++++..+|++|+.|++|++||+++++++..+..+ ..+.+++|+|++..+++++.|+.|++||++++.++..+.+
T Consensus 316 ~~~s~~g~~~laS~S~D~tvklWD~~~~~~~~~~~~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~~~l~g 395 (524)
T 2j04_B 316 TAYSDFEDTVVSTVAVDGYFYIFNPKDIATTKTTVSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAFAVHPLVS 395 (524)
T ss_dssp EECCTTSCCEEEEEETTSEEEEECGGGHHHHCEEEEECSCCSCCCEEEETTTTEEEEECSSSEEEEEETTCTTCCEEEEE
T ss_pred EEcCCCCCeEEEEeccCCeEEEEECCCCCcccccccccccCcccceEeCCCcCeEEEeCCCCcEEEEECcccccceeeec
Confidence 567776468899999999999999988877666532 2478999999999999999999999999999988888889
Q ss_pred CCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEe--ecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCC
Q 003236 723 HKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHEL--SCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTE 799 (837)
Q Consensus 723 h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~--~~~~~~I~sv~fspdg~~L~sgs~dg~I~IwDl~s 799 (837)
|.+.|++|+|+|++.+|++|+ |++|+|||+..... ...... ..+...+.+++|+|++..+. ...+..+..|+...
T Consensus 396 H~~~V~sva~Sp~g~~l~Sgs~Dgtv~lwd~~~~~~-~~~~~~~~~~~~~~v~~v~~sp~g~~~~-~~~~~~~~~~~~~g 473 (524)
T 2j04_B 396 RETTITAIGVSRLHPMVLAGSADGSLIITNAARRLL-HGIKNSSATQKSLRLWKWDYSIKDDKYR-IDSSYEVYPLTVND 473 (524)
T ss_dssp CSSCEEEEECCSSCCBCEEEETTTEEECCBSCSSTT-TCC------CCCCEEEECBCCSSSCEEE-ECCCCCCCC-----
T ss_pred CCCceEEEEeCCCCCeEEEEECCCEEEEEechHhhc-cccccCccceeeeEEEEeccCCCCCeEE-ccCCceecccccCC
Confidence 999999999999999999999 99999999865311 110000 01122577899999998442 22222232233233
Q ss_pred CcEEEeccCCCCeeEEEEeCCCC---EEEEEECCCcEEEeC
Q 003236 800 NKTLTLSAHDKLVSSLAASTVNG---MVASASHDKCVKIWK 837 (837)
Q Consensus 800 ~~~~~l~~h~~~V~sla~spdg~---~LaSgs~DG~I~IWd 837 (837)
.....+.+|...|.+|+|+|++. .||+|+.||.|+||+
T Consensus 474 ~~~~~l~gh~~~V~~Vafsp~~~~~~~lAsg~~~g~vrlw~ 514 (524)
T 2j04_B 474 VSKAKIDAHGINITCTKWNETSAGGKCYAFSNSAGLLTLEY 514 (524)
T ss_dssp --------CCCSCCCEEECCSTTTTTEEEEECTTSEEEEEE
T ss_pred cceeeecCCCceEEEEECCCCCCccHHHHhhccCceEEEEE
Confidence 34447889999999999999964 999999999999995
|
| >4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ... | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-33 Score=304.46 Aligned_cols=270 Identities=24% Similarity=0.410 Sum_probs=239.1
Q ss_pred CCCeEEcccCCCceEEeecCCCCCCCCccccccccCCCeeeeEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEeC
Q 003236 505 MDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCT 584 (837)
Q Consensus 505 ~~~~v~~Gs~D~~v~~w~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~H~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~ 584 (837)
...++++|+.|+.+++|...+. .....+.+|...|.+++|+|++++|++|+.|+.|+|||+
T Consensus 34 ~~~~l~s~~~dg~i~iw~~~~~-------------------~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~ 94 (312)
T 4ery_A 34 NGEWLASSSADKLIKIWGAYDG-------------------KFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDV 94 (312)
T ss_dssp TSSEEEEEETTSCEEEEETTTC-------------------CEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEET
T ss_pred CCCEEEEeeCCCeEEEEeCCCc-------------------ccchhhccCCCceEEEEEcCCCCEEEEECCCCEEEEEEC
Confidence 3468999999999999965432 234567899999999999999999999999999999999
Q ss_pred CCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeEEeeccccceEEEEEcCCCCeEEEEEeCCCc
Q 003236 585 ESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSE 664 (837)
Q Consensus 585 ~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~ 664 (837)
.+++.+..+.+|...|.+++|+|++.+|++++.|+.|++||+.+++ .+..+..|...|.+++|+|++. ++++++.|+.
T Consensus 95 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~-~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~ 172 (312)
T 4ery_A 95 SSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGK-CLKTLPAHSDPVSAVHFNRDGS-LIVSSSYDGL 172 (312)
T ss_dssp TTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCC-EEEEECCCSSCEEEEEECTTSS-EEEEEETTSC
T ss_pred CCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCE-EEEEecCCCCcEEEEEEcCCCC-EEEEEeCCCc
Confidence 9999999999999999999999999999999999999999999866 4778889999999999999976 6678999999
Q ss_pred EEEEECCCCeeeeEEec--CCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEcCCCCCEEE---EEEcCCCCEE
Q 003236 665 IRYWSINNGSCAGVFKC--QSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHS---VCWNTSGEYL 739 (837)
Q Consensus 665 I~vwDl~t~~~i~~~~~--~~~i~sl~~sp~g~~llags~dg~I~iwDl~s~~~~~~l~~h~~~V~s---l~~spdg~~L 739 (837)
|++||+++++.+..+.. ...+.+++|+|++.++++++.|+.|++||+++++++..+.+|...+.+ ....+++.+|
T Consensus 173 i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 252 (312)
T 4ery_A 173 CRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWI 252 (312)
T ss_dssp EEEEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEECSSCCSSSCCCEEEECSSSCEE
T ss_pred EEEEECCCCceeeEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEEecCCceEEEEEEEEeCCCcEE
Confidence 99999999988877643 456899999999999999999999999999999999999988765433 2334678899
Q ss_pred EEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEE--cCCeEEEEECC
Q 003236 740 ASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIG--CYETLELWNMT 798 (837)
Q Consensus 740 asgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fspdg~~L~sgs--~dg~I~IwDl~ 798 (837)
++++ |+.|++||+.++ ..+..+..|...|.+++|+|++..|++++ .|+.|++|+.+
T Consensus 253 ~sg~~dg~i~vwd~~~~---~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~~~d~~i~~W~~d 311 (312)
T 4ery_A 253 VSGSEDNLVYIWNLQTK---EIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSD 311 (312)
T ss_dssp EECCTTSCEEEEETTTC---CEEEEECCCSSCEEEEEECSSSSEEEEEECTTTCCEEEEECC
T ss_pred EEECCCCEEEEEECCCc---hhhhhhhccCCcEEEEeecCcCCceEEEEccCCccEEEecCC
Confidence 9988 999999999887 67888999999999999999999999987 58999999864
|
| >1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.8e-34 Score=308.77 Aligned_cols=278 Identities=17% Similarity=0.245 Sum_probs=243.3
Q ss_pred CCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCc--
Q 003236 554 STSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDY-- 631 (837)
Q Consensus 554 H~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~~~~-- 631 (837)
|.++|.+++|+|||++++++..++.+.+|+............|...|++++|+|++++|++++ ||.|++||+.++..
T Consensus 8 ~~~~v~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~~~ 86 (337)
T 1gxr_A 8 GSKPAYSFHVTADGQMQPVPFPPDALIGPGIPRHARQINTLNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKS 86 (337)
T ss_dssp EEEECCEEEECSSSCEEECCCCTTSSSSTTCCSEEEEEEEECCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCS
T ss_pred cCCceeEEEECCCCCEEEeecCCCcEeccccCCccccceeccCCCceEEEEEecCCcEEEEcC-CCeEEEEECCCCCcee
Confidence 456799999999999999998888887877665555555557999999999999999999998 99999999987543
Q ss_pred eeEEee--ccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCe--eeeEEe-cCCCeeEEEEecCCCEEEEEEcCCeE
Q 003236 632 SLRTFT--GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS--CAGVFK-CQSGATQMRFQPRLGRILAAAIENYI 706 (837)
Q Consensus 632 ~~~~~~--~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~--~i~~~~-~~~~i~sl~~sp~g~~llags~dg~I 706 (837)
.+..+. .|...|.+++|+|++. ++++++.|+.|++||+.+++ ....+. +...+.+++|+|++..+++++.|+.|
T Consensus 87 ~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v 165 (337)
T 1gxr_A 87 PVSQLDCLNRDNYIRSCKLLPDGC-TLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNI 165 (337)
T ss_dssp CSEEEECSCTTSBEEEEEECTTSS-EEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCE
T ss_pred eeecccccCCCCcEEEEEEcCCCC-EEEEEcCCCcEEEEECCCCCcceeeecccCCCceEEEEECCCCCEEEEEeCCCcE
Confidence 223333 7899999999999976 56688889999999999887 344444 35679999999999999999999999
Q ss_pred EEEECCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEE
Q 003236 707 SILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLV 785 (837)
Q Consensus 707 ~iwDl~s~~~~~~l~~h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fspdg~~L~s 785 (837)
++||+++++.+..+..|...|.+++|+|++.+|++++ |+.|++||++++ ..+..+. +...+.+++|+|++.+|++
T Consensus 166 ~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~---~~~~~~~-~~~~v~~~~~s~~~~~l~~ 241 (337)
T 1gxr_A 166 AVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREG---RQLQQHD-FTSQIFSLGYCPTGEWLAV 241 (337)
T ss_dssp EEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTT---EEEEEEE-CSSCEEEEEECTTSSEEEE
T ss_pred EEEeCCCCceeeeeecccCceEEEEECCCCCEEEEEecCCcEEEEECCCC---ceEeeec-CCCceEEEEECCCCCEEEE
Confidence 9999999999999999999999999999999999998 999999999887 5555543 6778999999999999999
Q ss_pred EEcCCeEEEEECCCCcEEEeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 003236 786 IGCYETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 837 (837)
Q Consensus 786 gs~dg~I~IwDl~s~~~~~l~~h~~~V~sla~spdg~~LaSgs~DG~I~IWd 837 (837)
++.++.|++||+.+++...+..|...|.+++|+|++++|++++.||.|++||
T Consensus 242 ~~~~~~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~ 293 (337)
T 1gxr_A 242 GMESSNVEVLHVNKPDKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWR 293 (337)
T ss_dssp EETTSCEEEEETTSSCEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred EcCCCcEEEEECCCCCeEEEcCCccceeEEEECCCCCEEEEecCCCcEEEEE
Confidence 9999999999999999889999999999999999999999999999999996
|
| >2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-33 Score=349.89 Aligned_cols=191 Identities=13% Similarity=0.138 Sum_probs=162.6
Q ss_pred CCCeEEcccCCCceEEeecCCCCCCCCccccccccCCCeeeeEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEeC
Q 003236 505 MDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCT 584 (837)
Q Consensus 505 ~~~~v~~Gs~D~~v~~w~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~H~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~ 584 (837)
...++++|+.|+.|++|..... ... ....|...|.+++|+| |++|++++.|++|+|||+
T Consensus 28 dg~~lAsgs~Dg~I~lw~~~~~-------------------~~~-~~~~~~~~V~~l~fsp-g~~L~S~s~D~~v~lWd~ 86 (902)
T 2oaj_A 28 TQNLLAIATVTGEVHIYGQQQV-------------------EVV-IKLEDRSAIKEMRFVK-GIYLVVINAKDTVYVLSL 86 (902)
T ss_dssp TTTEEEEEETTSEEEEECSTTC-------------------EEE-EECSSCCCEEEEEEET-TTEEEEEETTCEEEEEET
T ss_pred CCCEEEEEeCCCEEEEEeCCCc-------------------EEE-EEcCCCCCEEEEEEcC-CCEEEEEECcCeEEEEEC
Confidence 3478999999999999954211 111 2235788999999999 889999999999999999
Q ss_pred CCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCcee----------EEeeccccceEEEEEcCCCCe
Q 003236 585 ESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSL----------RTFTGHSTTVMSLDFHPSKED 654 (837)
Q Consensus 585 ~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~~~~~~----------~~~~~h~~~V~sl~fspdg~~ 654 (837)
.+++++..+. |.+.|++++|+|++++|++|+.||+|++||+.+..... ..+.+|...|.+++|+|++..
T Consensus 87 ~~~~~~~~~~-~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~ 165 (902)
T 2oaj_A 87 YSQKVLTTVF-VPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIG 165 (902)
T ss_dssp TTCSEEEEEE-CSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEETTEEE
T ss_pred CCCcEEEEEc-CCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCccccceeccccccccccccCCCCeEEEEEccCCCC
Confidence 9999988885 77899999999999999999999999999999765321 234678899999999998767
Q ss_pred EEEEEeCCCcEEEEECCCCeeeeEEecC-------------------CCeeEEEEecCCCEEEEEEcCCeEEEEECCCCe
Q 003236 655 LLCSCDNNSEIRYWSINNGSCAGVFKCQ-------------------SGATQMRFQPRLGRILAAAIENYISILDVETQV 715 (837)
Q Consensus 655 llasgs~Dg~I~vwDl~t~~~i~~~~~~-------------------~~i~sl~~sp~g~~llags~dg~I~iwDl~s~~ 715 (837)
++++|+.|+.| +||+++++++..+..+ ..|.+++|+|++.+|++++.|+.|++||+++++
T Consensus 166 ~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~i~lWd~~~g~ 244 (902)
T 2oaj_A 166 TVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNSLVFWDANSGH 244 (902)
T ss_dssp EEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTCCEEEEETTTCC
T ss_pred EEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCc
Confidence 88899999999 9999999988887654 569999999999999999999999999998766
Q ss_pred EEE
Q 003236 716 CRL 718 (837)
Q Consensus 716 ~~~ 718 (837)
++.
T Consensus 245 ~~~ 247 (902)
T 2oaj_A 245 MIM 247 (902)
T ss_dssp EEE
T ss_pred EEE
Confidence 543
|
| >2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-33 Score=317.66 Aligned_cols=296 Identities=20% Similarity=0.362 Sum_probs=262.1
Q ss_pred CCeEEcccCCCceEEeecCCCCCCCCccccccccCCCeeeeEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCC
Q 003236 506 DRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTE 585 (837)
Q Consensus 506 ~~~v~~Gs~D~~v~~w~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~H~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~ 585 (837)
+.++++|+.|+.|++|..... ..+..+.+|.+.|++++|+ +.+|++|+.||+|++||+.
T Consensus 129 g~~l~sg~~dg~i~vwd~~~~-------------------~~~~~~~~h~~~v~~~~~~--~~~l~s~~~dg~i~vwd~~ 187 (445)
T 2ovr_B 129 GNRIVSGSDDNTLKVWSAVTG-------------------KCLRTLVGHTGGVWSSQMR--DNIIISGSTDRTLKVWNAE 187 (445)
T ss_dssp TTEEEEEETTSCEEEEETTTC-------------------CEEEECCCCSSCEEEEEEE--TTEEEEEETTSCEEEEETT
T ss_pred CCEEEEEECCCcEEEEECCCC-------------------cEEEEEcCCCCCEEEEEec--CCEEEEEeCCCeEEEEECC
Confidence 468899999999999965432 2456778999999999998 5699999999999999999
Q ss_pred CCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeEEeeccccceEEEEEcCCCCeEEEEEeCCCcE
Q 003236 586 SFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEI 665 (837)
Q Consensus 586 t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I 665 (837)
+++.+..+.+|...|.+++|+ +.+|++++.||+|++||+.+++ .+..+.+|...|.+++| ++. ++++++.||.|
T Consensus 188 ~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~i~~wd~~~~~-~~~~~~~~~~~v~~~~~--~~~-~l~~~~~dg~i 261 (445)
T 2ovr_B 188 TGECIHTLYGHTSTVRCMHLH--EKRVVSGSRDATLRVWDIETGQ-CLHVLMGHVAAVRCVQY--DGR-RVVSGAYDFMV 261 (445)
T ss_dssp TTEEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEESSSCC-EEEEEECCSSCEEEEEE--CSS-CEEEEETTSCE
T ss_pred cCcEEEEECCCCCcEEEEEec--CCEEEEEeCCCEEEEEECCCCc-EEEEEcCCcccEEEEEE--CCC-EEEEEcCCCEE
Confidence 999999999999999999995 5689999999999999999866 47788899999999999 334 67789999999
Q ss_pred EEEECCCCeeeeEEec-CCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEe-
Q 003236 666 RYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS- 743 (837)
Q Consensus 666 ~vwDl~t~~~i~~~~~-~~~i~sl~~sp~g~~llags~dg~I~iwDl~s~~~~~~l~~h~~~V~sl~~spdg~~Lasgs- 743 (837)
++||+++++++..+.. ...+.++.| ++.++++++.|+.|++||+++++++..+.+|...+.++.++ +.+|++++
T Consensus 262 ~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~ 337 (445)
T 2ovr_B 262 KVWDPETETCLHTLQGHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELK--DNILVSGNA 337 (445)
T ss_dssp EEEEGGGTEEEEEECCCSSCEEEEEE--CSSEEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEEEE--TTEEEEEET
T ss_pred EEEECCCCcEeEEecCCCCceEEEEE--CCCEEEEEeCCCeEEEEECCCCCEEEEEcCCcccEEEEEEe--CCEEEEEeC
Confidence 9999999999888874 567888888 78899999999999999999999999999999999998875 66888888
Q ss_pred CCeEEEEEcCCCCCceeEEEeec---CCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE-Ee-----ccCCCCeeE
Q 003236 744 DELVRVWSIGSGSKGECIHELSC---TGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TL-----SAHDKLVSS 814 (837)
Q Consensus 744 Dg~I~IwDl~s~~~~~~i~~~~~---~~~~I~sv~fspdg~~L~sgs~dg~I~IwDl~s~~~~-~l-----~~h~~~V~s 814 (837)
|+.|++||++++ .++..+.. |...|.+++|+ +.+|++++.|+.|++||+.+++.+ .+ ..|.+.|++
T Consensus 338 dg~i~vwd~~~~---~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~ 412 (445)
T 2ovr_B 338 DSTVKIWDIKTG---QCLQTLQGPNKHQSAVTCLQFN--KNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWR 412 (445)
T ss_dssp TSCEEEEETTTC---CEEEEECSTTSCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEE
T ss_pred CCeEEEEECCCC---cEEEEEccCCCCCCCEEEEEEC--CCEEEEEeCCCeEEEEECCCCceeeeeeccccCCCCceEEE
Confidence 999999999887 56666665 78889999996 579999999999999999999887 33 378899999
Q ss_pred EEEeCCCCEEEEEECCCc----EEEeC
Q 003236 815 LAASTVNGMVASASHDKC----VKIWK 837 (837)
Q Consensus 815 la~spdg~~LaSgs~DG~----I~IWd 837 (837)
++|+|++.+|++|+.||+ |.|||
T Consensus 413 ~~~s~~~~~la~~~~dg~~~~~l~v~d 439 (445)
T 2ovr_B 413 IRASNTKLVCAVGSRNGTEETKLLVLD 439 (445)
T ss_dssp EEECSSEEEEEEECSSSSSCCEEEEEE
T ss_pred EEecCCEEEEEEcccCCCCccEEEEEE
Confidence 999999999999999998 99996
|
| >1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-33 Score=315.22 Aligned_cols=293 Identities=21% Similarity=0.339 Sum_probs=232.6
Q ss_pred ccccCCCeEEcccCCCceEEeecCCCCCCCCccccccccCCCeeeeEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEE
Q 003236 501 QLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAV 580 (837)
Q Consensus 501 ~l~~~~~~v~~Gs~D~~v~~w~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~H~~~V~sl~fSpdg~~Lasgs~Dg~I~ 580 (837)
.+.+...++++|+ ++.+++|...++................ ..........+...|++++|+|||++||+|+.|++|+
T Consensus 71 ~fspdg~~la~g~-~~~v~i~~~~~g~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~v~~v~~s~dg~~l~s~~~d~~i~ 148 (393)
T 1erj_A 71 KFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDP-ENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIR 148 (393)
T ss_dssp EECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC------------------CCCCBEEEEEECTTSSEEEEEETTSCEE
T ss_pred EECCCCCEEEEEc-CCcEEEEEecCCCEEEEecCcccccccc-ccccccccCCCceeEEEEEECCCCCEEEEEcCCCeEE
Confidence 3344557888887 6889999765432110000000000000 0000111223445699999999999999999999999
Q ss_pred EEeCCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeEEeeccccceEEEEEcCCCCeEEEEEe
Q 003236 581 LWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCD 660 (837)
Q Consensus 581 VWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~sl~fspdg~~llasgs 660 (837)
|||+.+++.+..+.+|...|.+++|+|++.+|++++.|++|++||+.++.. ...+. +...|.+++|+|....++++|+
T Consensus 149 iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~-~~~~~-~~~~v~~~~~~~~~~~~l~~~s 226 (393)
T 1erj_A 149 IWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQC-SLTLS-IEDGVTTVAVSPGDGKYIAAGS 226 (393)
T ss_dssp EEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEE-EEEEE-CSSCEEEEEECSTTCCEEEEEE
T ss_pred EEECCCCcEEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCee-EEEEE-cCCCcEEEEEECCCCCEEEEEc
Confidence 999999999999999999999999999999999999999999999998653 33443 6678999999995456788999
Q ss_pred CCCcEEEEECCCCeeeeEEe--------cCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCC------------eEEEEE
Q 003236 661 NNSEIRYWSINNGSCAGVFK--------CQSGATQMRFQPRLGRILAAAIENYISILDVETQ------------VCRLKL 720 (837)
Q Consensus 661 ~Dg~I~vwDl~t~~~i~~~~--------~~~~i~sl~~sp~g~~llags~dg~I~iwDl~s~------------~~~~~l 720 (837)
.|+.|++||++++..+..+. +...|.+++|+|++.+|++++.|+.|++||+++. .+...+
T Consensus 227 ~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~ 306 (393)
T 1erj_A 227 LDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTY 306 (393)
T ss_dssp TTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC---------------CEEEEE
T ss_pred CCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCEEEEEECCCCCCcccccCCCCCcceEEE
Confidence 99999999999998877662 3567999999999999999999999999999753 456677
Q ss_pred cCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeC------CCCEEEEEEcCCeEE
Q 003236 721 QGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHP------TFPSLLVIGCYETLE 793 (837)
Q Consensus 721 ~~h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fsp------dg~~L~sgs~dg~I~ 793 (837)
.+|...|.+++|++++.+|++++ |+.|++||+.++ .++..+.+|...|.+++|++ ++.+|++++.|++|+
T Consensus 307 ~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~---~~~~~l~~h~~~v~~v~~~~~~~~~p~~~~l~sgs~Dg~i~ 383 (393)
T 1erj_A 307 IGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSG---NPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKAR 383 (393)
T ss_dssp ECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTC---CEEEEEECCSSCEEEEEECSSCTTCTTCEEEEEEETTSEEE
T ss_pred ecccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCC---eEEEEECCCCCCEEEEEecCCcCcCCCCCEEEEECCCCcEE
Confidence 88999999999999999999999 999999999987 67888899999999999986 678999999999999
Q ss_pred EEECCCC
Q 003236 794 LWNMTEN 800 (837)
Q Consensus 794 IwDl~s~ 800 (837)
||++...
T Consensus 384 iW~~~~~ 390 (393)
T 1erj_A 384 IWKYKKI 390 (393)
T ss_dssp EEEEEEC
T ss_pred ECccccc
Confidence 9997543
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-33 Score=342.59 Aligned_cols=310 Identities=20% Similarity=0.295 Sum_probs=271.4
Q ss_pred CCCeEEcccCCCceEEeecCCCCCCCCccccccccCCCeeeeEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEeC
Q 003236 505 MDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCT 584 (837)
Q Consensus 505 ~~~~v~~Gs~D~~v~~w~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~H~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~ 584 (837)
...++++|+.|+.|++|..... ..+..+.+|.+.|++++|+|++++|++|+.||.|+|||+
T Consensus 24 ~~~~la~~~~~g~v~iwd~~~~-------------------~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~ 84 (814)
T 3mkq_A 24 TEPWVLTTLYSGRVEIWNYETQ-------------------VEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNY 84 (814)
T ss_dssp SSSEEEEEETTSEEEEEETTTT-------------------EEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEET
T ss_pred CCCEEEEEeCCCEEEEEECCCC-------------------ceEEEEecCCCcEEEEEEeCCCCEEEEEeCCCeEEEEEC
Confidence 3478899999999999965332 245677899999999999999999999999999999999
Q ss_pred CCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeEEeeccccceEEEEEcCCCCeEEEEEeCCCc
Q 003236 585 ESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSE 664 (837)
Q Consensus 585 ~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~ 664 (837)
.+++.+..+.+|.+.|++++|+|++.+|++++.||.|++||+.++......+.+|...|.+++|+|++..++++++.||.
T Consensus 85 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~ 164 (814)
T 3mkq_A 85 NTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRT 164 (814)
T ss_dssp TTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSE
T ss_pred CCCcEEEEEecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcCCCCEEEEEeCCCe
Confidence 99999999999999999999999999999999999999999998766778889999999999999954567889999999
Q ss_pred EEEEECCCCeeeeEEecC--CCeeEEEEec--CCCEEEEEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEcCCCCEEE
Q 003236 665 IRYWSINNGSCAGVFKCQ--SGATQMRFQP--RLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLA 740 (837)
Q Consensus 665 I~vwDl~t~~~i~~~~~~--~~i~sl~~sp--~g~~llags~dg~I~iwDl~s~~~~~~l~~h~~~V~sl~~spdg~~La 740 (837)
|++||+.++.....+... ..+.+++|+| ++..+++++.|+.|++||++++..+..+.+|...|.+++|+|++.+|+
T Consensus 165 v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 244 (814)
T 3mkq_A 165 VKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIII 244 (814)
T ss_dssp EEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSEEE
T ss_pred EEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEE
Confidence 999999988877776643 6799999999 999999999999999999999999999999999999999999999999
Q ss_pred EEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCE-EEEEEcCCeEEEEECCCCc----------EE-----
Q 003236 741 SVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPS-LLVIGCYETLELWNMTENK----------TL----- 803 (837)
Q Consensus 741 sgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fspdg~~-L~sgs~dg~I~IwDl~s~~----------~~----- 803 (837)
+++ ||.|++||+.++ ..+..+..+...+.+++|+|++.. +++++.++.+.+|++.... .+
T Consensus 245 ~~~~dg~v~vwd~~~~---~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 321 (814)
T 3mkq_A 245 SGSEDGTLKIWNSSTY---KVEKTLNVGLERSWCIATHPTGRKNYIASGFDNGFTVLSLGNDEPTLSLDPVGKLVWSGGK 321 (814)
T ss_dssp EEETTSCEEEEETTTC---SEEEEECCSSSSEEEEEECTTCGGGEEEEEETTEEEEEECSCCSCCEEECSSSEEEEECCT
T ss_pred EEeCCCeEEEEECCCC---cEEEEeecCCCcEEEEEEccCCCceEEEEEeCCCEEEEEcCCCCceeEECCCCCEEEECcc
Confidence 999 999999999887 678888888999999999999874 3666667788889875432 11
Q ss_pred -----------------------------EeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 003236 804 -----------------------------TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 837 (837)
Q Consensus 804 -----------------------------~l~~h~~~V~sla~spdg~~LaSgs~DG~I~IWd 837 (837)
.+..+...+.+++|+|+|++|++++ ||.+.||+
T Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~-~~~~~i~~ 383 (814)
T 3mkq_A 322 NAAASDIFTAVIRGNEEVEQDEPLSLQTKELGSVDVFPQSLAHSPNGRFVTVVG-DGEYVIYT 383 (814)
T ss_dssp TSCTTCEEEEECCSCCCCCSSSCBCCCCEEECCCSSCCSEEEECTTSSEEEEEE-TTEEEEEE
T ss_pred cccceeeeeeecccccccccCccceeeeecCCCCccCCceeEECCCCCEEEEec-CCEEEEEE
Confidence 1123445688999999999999988 88999985
|
| >3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.7e-34 Score=364.83 Aligned_cols=313 Identities=21% Similarity=0.374 Sum_probs=272.2
Q ss_pred cCCCeEEcccCCCceEEeecCCCCCCCCccccccccCCCeeeeEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEe
Q 003236 504 DMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWC 583 (837)
Q Consensus 504 ~~~~~v~~Gs~D~~v~~w~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~H~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd 583 (837)
+...++++|+.|+.|++|..... ..+..+.+|.+.|++++|+|++++||+|+.|+.|+|||
T Consensus 625 ~~~~~l~s~~~d~~i~vw~~~~~-------------------~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd 685 (1249)
T 3sfz_A 625 QDGQRIASCGADKTLQVFKAETG-------------------EKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWD 685 (1249)
T ss_dssp TTSSEEEEEETTSCEEEEETTTC-------------------CEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred CCCCEEEEEeCCCeEEEEECCCC-------------------CEEEEeccCCCCEEEEEEecCCCEEEEEeCCCeEEEEE
Confidence 34478999999999999966433 24667889999999999999999999999999999999
Q ss_pred CCCCeEEEEeccCCCCeEEEEEcC--CCCEEEEEeCCCeEEEEEcCCCCceeEEeeccccceEEEEEcCCCCeEEEEEeC
Q 003236 584 TESFTVKSTLEEHTQWITDVRFSP--SLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDN 661 (837)
Q Consensus 584 ~~t~~~~~~l~~h~~~I~~l~fsp--dg~~Latgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~sl~fspdg~~llasgs~ 661 (837)
+.+++.+..+.+|...|.+++|+| ++.++++++.|+.|++||+.++. .+..+.+|...|.+++|+|++. ++++++.
T Consensus 686 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~-~~~~~~~h~~~v~~~~~sp~~~-~l~s~s~ 763 (1249)
T 3sfz_A 686 SATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKE-CRNTMFGHTNSVNHCRFSPDDE-LLASCSA 763 (1249)
T ss_dssp TTTCCEEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSS-EEEEECCCSSCEEEEEECSSTT-EEEEEES
T ss_pred CCCCceEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcc-hhheecCCCCCEEEEEEecCCC-EEEEEEC
Confidence 999999999999999999999999 56689999999999999999876 4778889999999999999977 6668999
Q ss_pred CCcEEEEECCCCeeeeEEe--------------------------------------------------------cCCCe
Q 003236 662 NSEIRYWSINNGSCAGVFK--------------------------------------------------------CQSGA 685 (837)
Q Consensus 662 Dg~I~vwDl~t~~~i~~~~--------------------------------------------------------~~~~i 685 (837)
||.|++||+.++.....+. +...+
T Consensus 764 dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v 843 (1249)
T 3sfz_A 764 DGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTI 843 (1249)
T ss_dssp SSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEEEECSSSSCC
T ss_pred CCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCceeEEcCCCCCce
Confidence 9999999998776544332 23457
Q ss_pred eEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCc------
Q 003236 686 TQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKG------ 758 (837)
Q Consensus 686 ~sl~~sp~g~~llags~dg~I~iwDl~s~~~~~~l~~h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~------ 758 (837)
.+++|+|++..+++++.++.|++||+.++..+..+.+|...|++++|+|++.+|++++ |+.|++||+.+....
T Consensus 844 ~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~s~s~dg~v~vw~~~~~~~~~~~~~~ 923 (1249)
T 3sfz_A 844 QYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLK 923 (1249)
T ss_dssp CEEEECSSTTEEEEECSSSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEHHHHHSCCSSSEE
T ss_pred EEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeeecCCCccceEEEEECCCCCEEEEEeCCCeEEEEEccccceeeeeccc
Confidence 8899999999999999999999999999999999999999999999999999999999 999999997531100
Q ss_pred --------------------eeEE--------EeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE-EeccCC
Q 003236 759 --------------------ECIH--------ELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHD 809 (837)
Q Consensus 759 --------------------~~i~--------~~~~~~~~I~sv~fspdg~~L~sgs~dg~I~IwDl~s~~~~-~l~~h~ 809 (837)
..+. ........+.+++|+|++.++++++.+|.|++||+.+++.+ .+.+|.
T Consensus 924 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~~~~~~~~~h~ 1003 (1249)
T 3sfz_A 924 QEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHK 1003 (1249)
T ss_dssp EEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEEECTTSSEEEEEETTSCCEEEETTTTSCEEECCCCS
T ss_pred ceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCcEEEEEEcCCCCEEEEEcCCCCEEEEEcCCCceeeecccCC
Confidence 0000 01123467899999999999999999999999999998877 667899
Q ss_pred CCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 003236 810 KLVSSLAASTVNGMVASASHDKCVKIWK 837 (837)
Q Consensus 810 ~~V~sla~spdg~~LaSgs~DG~I~IWd 837 (837)
..|++++|+|++++|++++.||.|++||
T Consensus 1004 ~~v~~l~~s~dg~~l~s~~~dg~i~vwd 1031 (1249)
T 3sfz_A 1004 KAVRHIQFTADGKTLISSSEDSVIQVWN 1031 (1249)
T ss_dssp SCCCCEEECSSSSCEEEECSSSBEEEEE
T ss_pred CceEEEEECCCCCEEEEEcCCCEEEEEE
Confidence 9999999999999999999999999996
|
| >3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-33 Score=319.05 Aligned_cols=280 Identities=18% Similarity=0.302 Sum_probs=246.4
Q ss_pred eEEEEecCCCCCe-EEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEE
Q 003236 546 TEFQLIPASTSKV-ESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVW 624 (837)
Q Consensus 546 ~~~~~l~~H~~~V-~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IW 624 (837)
.....+.+|.+.| .|+.| ++++|++|+.||+|++||+.+++.+..+.+|.+.|++++|++++ +|++|+.||+|++|
T Consensus 112 ~~~~~l~~h~~~v~~~~~~--~~~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~-~l~s~s~dg~i~vw 188 (464)
T 3v7d_B 112 PQRTTLRGHMTSVITCLQF--EDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGG-ILVSGSTDRTVRVW 188 (464)
T ss_dssp CEEEEEECCSSSCEEEEEE--ETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSTT-EEEEEETTSCEEEE
T ss_pred cceEEEcCCCCCcEEEEEE--CCCEEEEEcCCCcEEEEECCCCcEEEEEeCCCcCEEEEEEcCCC-EEEEEeCCCCEEEE
Confidence 3456788999885 66666 56799999999999999999999999999999999999999987 99999999999999
Q ss_pred EcCCCCceeEEeeccccceEEEEEcCC-CCeEEEEEeCCCcEEEEECCCCeeee-----------------------EEe
Q 003236 625 DTENPDYSLRTFTGHSTTVMSLDFHPS-KEDLLCSCDNNSEIRYWSINNGSCAG-----------------------VFK 680 (837)
Q Consensus 625 Dl~~~~~~~~~~~~h~~~V~sl~fspd-g~~llasgs~Dg~I~vwDl~t~~~i~-----------------------~~~ 680 (837)
|+.++. .+..+.+|...|.+++|++. +..++++++.|+.|++||+.++.... .+.
T Consensus 189 d~~~~~-~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (464)
T 3v7d_B 189 DIKKGC-CTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLR 267 (464)
T ss_dssp ETTTTE-EEEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEEC
T ss_pred ECCCCc-EEEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEcc
Confidence 999865 57888899999999999952 34678899999999999998876432 121
Q ss_pred -cCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCc
Q 003236 681 -CQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKG 758 (837)
Q Consensus 681 -~~~~i~sl~~sp~g~~llags~dg~I~iwDl~s~~~~~~l~~h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~ 758 (837)
+...+.+ +++++..+++++.|+.|++||+++++++..+.+|...|.+++|+|++.+|++++ |+.|++||++++
T Consensus 268 ~~~~~v~~--~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~--- 342 (464)
T 3v7d_B 268 GHMASVRT--VSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENG--- 342 (464)
T ss_dssp CCSSCEEE--EEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTT---
T ss_pred CccceEEE--EcCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCC---
Confidence 1233444 477889999999999999999999999999999999999999999999999999 999999999987
Q ss_pred eeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEEEeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 003236 759 ECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 837 (837)
Q Consensus 759 ~~i~~~~~~~~~I~sv~fspdg~~L~sgs~dg~I~IwDl~s~~~~~l~~h~~~V~sla~spdg~~LaSgs~DG~I~IWd 837 (837)
.++..+..|...|.+++|+ +.+|++++.|+.|++||+.++.......|...+..++|++++.+|++++ ||.|+|||
T Consensus 343 ~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-dg~i~iwd 418 (464)
T 3v7d_B 343 ELMYTLQGHTALVGLLRLS--DKFLVSAAADGSIRGWDANDYSRKFSYHHTNLSAITTFYVSDNILVSGS-ENQFNIYN 418 (464)
T ss_dssp EEEEEECCCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEEECTTCCCEEEEEECSSEEEEEE-TTEEEEEE
T ss_pred cEEEEEeCCCCcEEEEEEc--CCEEEEEeCCCcEEEEECCCCceeeeecCCCCccEEEEEeCCCEEEEec-CCeEEEEE
Confidence 7888999999999999998 4789999999999999999988776667888899999999999999998 89999996
|
| >1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-33 Score=329.96 Aligned_cols=302 Identities=18% Similarity=0.234 Sum_probs=251.5
Q ss_pred eEEcccCCCceEEeecCCCCCCCCccccccccCCCeeeeEEEEecCCCC---CeEEEEEcCC-CCEEEEEECCCcEEEEe
Q 003236 508 FVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTS---KVESCHFSPD-GKLLATGGHDKKAVLWC 583 (837)
Q Consensus 508 ~v~~Gs~D~~v~~w~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~H~~---~V~sl~fSpd-g~~Lasgs~Dg~I~VWd 583 (837)
++++|+.|+.+++|.... ...+..+.+|.. .|++++|+|+ +++|++++.|+.|++||
T Consensus 175 ~l~~~~~d~~v~vwd~~~-------------------~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd 235 (615)
T 1pgu_A 175 RSMTVGDDGSVVFYQGPP-------------------FKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFD 235 (615)
T ss_dssp EEEEEETTTEEEEEETTT-------------------BEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEE
T ss_pred EEEEEeCCCcEEEEeCCC-------------------cceeeeecccCCCCceEEEEEECCCCCCEEEEEeCCCeEEEEE
Confidence 788999999999996322 234667889999 9999999999 99999999999999999
Q ss_pred CCCCeEEEEe-c---cCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCce---------------------------
Q 003236 584 TESFTVKSTL-E---EHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYS--------------------------- 632 (837)
Q Consensus 584 ~~t~~~~~~l-~---~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~~~~~--------------------------- 632 (837)
+.+++.+..+ . .|...|.+++|+ ++.+|++++.|+.|++||+.+++..
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 314 (615)
T 1pgu_A 236 GKSGEFLKYIEDDQEPVQGGIFALSWL-DSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIIS 314 (615)
T ss_dssp TTTCCEEEECCBTTBCCCSCEEEEEES-SSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEEETTEEEE
T ss_pred CCCCCEeEEecccccccCCceEEEEEc-CCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcccCceeEEEeCCCCeEEE
Confidence 9999999998 6 899999999999 9999999999999999999864321
Q ss_pred -----------------eEEeeccccceEEEEEcCC---------------------------------CCeEEEEEeCC
Q 003236 633 -----------------LRTFTGHSTTVMSLDFHPS---------------------------------KEDLLCSCDNN 662 (837)
Q Consensus 633 -----------------~~~~~~h~~~V~sl~fspd---------------------------------g~~llasgs~D 662 (837)
+..+.+|...|.+++| |+ +. .+++++.|
T Consensus 315 ~~~~g~i~~~d~~~~~~~~~~~~~~~~v~~~~~-~~l~~~~~dg~i~~w~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~d 392 (615)
T 1pgu_A 315 LSLDGTLNFYELGHDEVLKTISGHNKGITALTV-NPLISGSYDGRIMEWSSSSMHQDHSNLIVSLDNSKAQ-EYSSISWD 392 (615)
T ss_dssp EETTSCEEEEETTEEEEEEEECCCSSCEEEEET-TTTEEEETTSCEEETTTTEEECCCCSCEEEEECCSTT-CCEEEETT
T ss_pred EECCCCEEEEECCCCcEEEEEeCCCCCEEEEEe-cCcEEECCCCeEEEEEchhhcCcccCceEEEEECCCc-EEEEEeCC
Confidence 1222234444444444 32 23 34455566
Q ss_pred CcEEEEECC----------------------------------CCeeeeEEecCCCeeEEEEecCCCEEEEEEc-CCeEE
Q 003236 663 SEIRYWSIN----------------------------------NGSCAGVFKCQSGATQMRFQPRLGRILAAAI-ENYIS 707 (837)
Q Consensus 663 g~I~vwDl~----------------------------------t~~~i~~~~~~~~i~sl~~sp~g~~llags~-dg~I~ 707 (837)
+.|++||+. +++.+..+.+...+.+++|+ +.++++++. |+.|+
T Consensus 393 ~~i~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~~~~~~d~~i~ 470 (615)
T 1pgu_A 393 DTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAVSLS--QNYVAVGLEEGNTIQ 470 (615)
T ss_dssp TEEEETTEEEEECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEEC--SSEEEEEETTTSCEE
T ss_pred CCEEEEEcccCcccCCceEEEEcCCCCEEEEeCCCceEEEeccCCceeeecccCCCceEEEEc--CCEEEEeecCCCeEE
Confidence 666666554 34445555556778888888 789999999 99999
Q ss_pred EEECCCCeEE-EEEcCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeec-CCCceEEEEEeC------
Q 003236 708 ILDVETQVCR-LKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSC-TGNKFHSCVFHP------ 778 (837)
Q Consensus 708 iwDl~s~~~~-~~l~~h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~-~~~~I~sv~fsp------ 778 (837)
+||+.++... ..+..|...|++++|+|++++|++++ |+.|++||+.++ +.+..+.. |...|.+++|+|
T Consensus 471 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~---~~~~~~~~~h~~~v~~~~~sp~~~~~~ 547 (615)
T 1pgu_A 471 VFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSR---EVKTSRWAFRTSKINAISWKPAEKGAN 547 (615)
T ss_dssp EEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTT---EEEECCSCCCSSCEEEEEECCCC----
T ss_pred EEECCCccccccccCCccCceEEEEECCCCCEEEEcCCCCeEEEeeCCCC---cceeEeecCCCCceeEEEEcCcccccc
Confidence 9999988665 66778999999999999999999998 999999999987 77777777 999999999999
Q ss_pred ----CCCEEEEEEcCCeEEEEECCCC-cEE-EeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 003236 779 ----TFPSLLVIGCYETLELWNMTEN-KTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 837 (837)
Q Consensus 779 ----dg~~L~sgs~dg~I~IwDl~s~-~~~-~l~~h~~~V~sla~spdg~~LaSgs~DG~I~IWd 837 (837)
++.+|++++.|+.|++||+.++ +.+ .+.+|...|++++|+|++. |++++.||.|+|||
T Consensus 548 ~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~l~~s~~~~-l~s~~~d~~v~iw~ 611 (615)
T 1pgu_A 548 EEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPST-LVSSGADACIKRWN 611 (615)
T ss_dssp --CCSCCEEEEEETTSCEEEEESSCTTCCEEETTSSTTCEEEEEEEETTE-EEEEETTSCEEEEE
T ss_pred ccccCCCEEEEEcCCCcEEEEECCCCceechhhhcCccceEEEEEcCCCC-eEEecCCceEEEEe
Confidence 9999999999999999999987 444 6779999999999999999 99999999999996
|
| >4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-34 Score=318.58 Aligned_cols=279 Identities=13% Similarity=0.100 Sum_probs=227.7
Q ss_pred CCeEEEEEcCCCCEEEEEECCC-------cEEEEeCCCCe----------EEEEeccCCCCeEEEEEcCCCCEEEEE---
Q 003236 556 SKVESCHFSPDGKLLATGGHDK-------KAVLWCTESFT----------VKSTLEEHTQWITDVRFSPSLSRLATS--- 615 (837)
Q Consensus 556 ~~V~sl~fSpdg~~Lasgs~Dg-------~I~VWd~~t~~----------~~~~l~~h~~~I~~l~fspdg~~Latg--- 615 (837)
-+|+|++|+||+++||+|+.|. +|+||++.... ....+..|...|.+++++ +..++++
T Consensus 15 ~PV~sv~fs~dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~~~~~~~l~~~~~~v~s~~~~--~~~~~~g~~~ 92 (365)
T 4h5i_A 15 YPAYGAKFLNNDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFHILSEFALEDNDDSPTAIDAS--KGIILVGCNE 92 (365)
T ss_dssp SCEEEEEEEETTEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEEEEEEEECCTTSCCCCEEEEE--TTEEEEECCC
T ss_pred CCEEEEEEeCCCcEEEEECCCccccCCCCEEEEEEEcCCCcceeeeeeeeeEEEccCCCCceEEEEeC--CCEEEEEECC
Confidence 4799999999999999997643 59999986532 123567888999998875 4466665
Q ss_pred --------eCCCeEEEEEcCCCCceeEEe--------eccccceEEEEEcCCCCeEE-EEEeCCCcEEEEECCCCeeeeE
Q 003236 616 --------SADRTVRVWDTENPDYSLRTF--------TGHSTTVMSLDFHPSKEDLL-CSCDNNSEIRYWSINNGSCAGV 678 (837)
Q Consensus 616 --------s~Dg~I~IWDl~~~~~~~~~~--------~~h~~~V~sl~fspdg~~ll-asgs~Dg~I~vwDl~t~~~i~~ 678 (837)
+.|+.|++|++......+... ..+...+.+++|+|||..++ ++++.|++|++||+.+++++..
T Consensus 93 ~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~~~~~ 172 (365)
T 4h5i_A 93 NSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREGTVAAIASSKVPAIMRIIDPSDLTEKFE 172 (365)
T ss_dssp CHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTSSCEEEEESCSSCEEEEEETTTTEEEEE
T ss_pred CccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCCCEEEEEECCCCCEEEEeECCCCcEEEE
Confidence 457889999987655433222 23445689999999998764 4566799999999999999999
Q ss_pred EecCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEE--EcCCCCCEEEEEEcCCCCEEEEEe-CC----eEEEEE
Q 003236 679 FKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLK--LQGHKNQVHSVCWNTSGEYLASVS-DE----LVRVWS 751 (837)
Q Consensus 679 ~~~~~~i~sl~~sp~g~~llags~dg~I~iwDl~s~~~~~~--l~~h~~~V~sl~~spdg~~Lasgs-Dg----~I~IwD 751 (837)
+.+...|.+++|+|++.++++++ ++.+.+|+..++..+.. ...|...|.+++|+|++.++++++ |+ .+++|+
T Consensus 173 ~~~~~~V~~v~fspdg~~l~s~s-~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~ 251 (365)
T 4h5i_A 173 IETRGEVKDLHFSTDGKVVAYIT-GSSLEVISTVTGSCIARKTDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKIS 251 (365)
T ss_dssp EECSSCCCEEEECTTSSEEEEEC-SSCEEEEETTTCCEEEEECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEE
T ss_pred eCCCCceEEEEEccCCceEEecc-ceeEEEEEeccCcceeeeecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeecc
Confidence 99989999999999999888877 55677777777665543 446888999999999999999988 65 688899
Q ss_pred cCCCCC-ceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE-E-eccCCCCeeEEEEeCCCCEEEEEE
Q 003236 752 IGSGSK-GECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-T-LSAHDKLVSSLAASTVNGMVASAS 828 (837)
Q Consensus 752 l~s~~~-~~~i~~~~~~~~~I~sv~fspdg~~L~sgs~dg~I~IwDl~s~~~~-~-l~~h~~~V~sla~spdg~~LaSgs 828 (837)
+..... ......+..|...|++++|+|++++|++|+.|+.|+|||+.+++++ . +.+|...|++|+|+|||++||||+
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~~~~~~~~gH~~~V~~v~fSpdg~~laS~S 331 (365)
T 4h5i_A 252 IKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLASNDNSIALVKLKDLSMSKIFKQAHSFAITEVTISPDSTYVASVS 331 (365)
T ss_dssp EETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEETTSSSSCEEEEEECTTSCEEEEEE
T ss_pred cccceecceeeeeecCCCCCeEeEEECCCCCceEEEcCCCEEEEEECCCCcEEEEecCcccCCEEEEEECCCCCEEEEEe
Confidence 876532 1234567788899999999999999999999999999999999987 4 368999999999999999999999
Q ss_pred CCCcEEEeC
Q 003236 829 HDKCVKIWK 837 (837)
Q Consensus 829 ~DG~I~IWd 837 (837)
.|++|+|||
T Consensus 332 ~D~tvrvw~ 340 (365)
T 4h5i_A 332 AANTIHIIK 340 (365)
T ss_dssp TTSEEEEEE
T ss_pred CCCeEEEEE
Confidence 999999996
|
| >4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-32 Score=298.90 Aligned_cols=278 Identities=15% Similarity=0.249 Sum_probs=242.5
Q ss_pred CCeEEcccCCCceEEeecCCCCCCCCccccccccCCCeeeeEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCC
Q 003236 506 DRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTE 585 (837)
Q Consensus 506 ~~~v~~Gs~D~~v~~w~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~H~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~ 585 (837)
..++++|+.|++|++|...... .........+.+|...|++++|+|++++|++|+.|+.|++|+..
T Consensus 51 ~~~l~S~s~D~~i~vWd~~~~~--------------~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~~~d~~i~~~~~~ 116 (340)
T 4aow_A 51 PDMILSASRDKTIIMWKLTRDE--------------TNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLT 116 (340)
T ss_dssp TTEEEEEETTSCEEEEEECCSS--------------SCSEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETT
T ss_pred CCEEEEEcCCCeEEEEECCCCC--------------cccceeeEEEeCCCCCEEEEEECCCCCEEEEEcccccceEEeec
Confidence 3689999999999999765432 11223467789999999999999999999999999999999999
Q ss_pred CCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeEEeeccccceEEEEEcCCCC-eEEEEEeCCCc
Q 003236 586 SFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKE-DLLCSCDNNSE 664 (837)
Q Consensus 586 t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~sl~fspdg~-~llasgs~Dg~ 664 (837)
..........+...+..+.+++++.+|++++.|+.+++||+...........+|...|.+++|++++. .++++++.|+.
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~ 196 (340)
T 4aow_A 117 TGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKL 196 (340)
T ss_dssp TTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSCSSSCEEEEEETTSC
T ss_pred ccceeeeecCCCCceeEEEEeecCccceeecCCCeEEEEEeCCCceEEEEeccccCcccceEEccCCCCcEEEEEcCCCE
Confidence 99999888889999999999999999999999999999999876665666788999999999998754 46778999999
Q ss_pred EEEEECCCCeeeeEEec-CCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEe
Q 003236 665 IRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS 743 (837)
Q Consensus 665 I~vwDl~t~~~i~~~~~-~~~i~sl~~sp~g~~llags~dg~I~iwDl~s~~~~~~l~~h~~~V~sl~~spdg~~Lasgs 743 (837)
|++||+++++++..+.. ...|.+++|+|++.+|++++.|+.|++||+++.+.+..+.. ...|.+++|+|++.+++++.
T Consensus 197 i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~~~ 275 (340)
T 4aow_A 197 VKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDG-GDIINALCFSPNRYWLCAAT 275 (340)
T ss_dssp EEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEEC-SSCEEEEEECSSSSEEEEEE
T ss_pred EEEEECCCCceeeEecCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEeccCceeeeecC-CceEEeeecCCCCceeeccC
Confidence 99999999998888764 56799999999999999999999999999999999988874 46899999999999888878
Q ss_pred CCeEEEEEcCCCCCceeEEE---------eecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCc
Q 003236 744 DELVRVWSIGSGSKGECIHE---------LSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENK 801 (837)
Q Consensus 744 Dg~I~IwDl~s~~~~~~i~~---------~~~~~~~I~sv~fspdg~~L~sgs~dg~I~IwDl~s~~ 801 (837)
|+.|+|||+++. ..+.. ...|...|++++|+|++++|++++.|+.|+|||+.+|+
T Consensus 276 d~~i~iwd~~~~---~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~Dg~v~iW~~~tGt 339 (340)
T 4aow_A 276 GPSIKIWDLEGK---IIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQVTIGT 339 (340)
T ss_dssp TTEEEEEETTTT---EEEEEECCC-------CCCCCEEEEEECTTSSEEEEEETTSCEEEEEEEC--
T ss_pred CCEEEEEECCCC---eEEEeccccceeeeccCCCCCEEEEEECCCCCEEEEEeCCCEEEEEeCCCcC
Confidence 999999999876 33333 34577899999999999999999999999999998875
|
| >1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-33 Score=328.68 Aligned_cols=307 Identities=17% Similarity=0.281 Sum_probs=264.6
Q ss_pred ccCCCeEEcccCCCceEEeecCCCCCCCCccccccccCCCeeeeEEEEecCCCCC-eEEEEEcC--CCCEEEEEECCCcE
Q 003236 503 TDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSK-VESCHFSP--DGKLLATGGHDKKA 579 (837)
Q Consensus 503 ~~~~~~v~~Gs~D~~v~~w~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~H~~~-V~sl~fSp--dg~~Lasgs~Dg~I 579 (837)
.+...++++++ ++.+.+|...+.. ........+.+|.+. |++++|+| ++++||+|+.||.|
T Consensus 27 spdg~~l~~~~-~~~v~v~~~~~~~---------------~~~~~~~~~~~h~~~~v~~~~~sp~~~~~~l~s~~~dg~v 90 (615)
T 1pgu_A 27 DPTTNAIAYPC-GKSAFVRCLDDGD---------------SKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKV 90 (615)
T ss_dssp ETTTTEEEEEE-TTEEEEEECCSSC---------------CSSCSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEE
T ss_pred CCCCCEEEEec-CCeEEEEECCCCC---------------CccccceEEecCCCceEEEEEECcCCCCCEEEEecCCCEE
Confidence 33446777777 7889999654321 011346778899999 99999999 99999999999999
Q ss_pred EEEeCCCC--------eEEEEeccCCCCeEEEEEcCCCCEEEEEeCC----CeEEEEEcCCCCceeEEeeccccceEEEE
Q 003236 580 VLWCTESF--------TVKSTLEEHTQWITDVRFSPSLSRLATSSAD----RTVRVWDTENPDYSLRTFTGHSTTVMSLD 647 (837)
Q Consensus 580 ~VWd~~t~--------~~~~~l~~h~~~I~~l~fspdg~~Latgs~D----g~I~IWDl~~~~~~~~~~~~h~~~V~sl~ 647 (837)
+|||+.++ +....+..|...|.+++|+|++++|++++.+ +.|++||.. + .+..+.+|...|.+++
T Consensus 91 ~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d~~--~-~~~~~~~~~~~v~~~~ 167 (615)
T 1pgu_A 91 IVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSG--N-SLGEVSGHSQRINACH 167 (615)
T ss_dssp EEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETTTC--C-EEEECCSCSSCEEEEE
T ss_pred EEEeCCCCcccccccccccchhhcccccEEEEEEeCCCCEEEEeccCCCCccEEEEEECC--C-cceeeecCCccEEEEE
Confidence 99999754 6778888899999999999999999999988 789999832 3 5788889999999999
Q ss_pred EcCCCCeEEEEEeCCCcEEEEECCCCeeeeEEec-CC---CeeEEEEecC-CCEEEEEEcCCeEEEEECCCCeEEEEE-c
Q 003236 648 FHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QS---GATQMRFQPR-LGRILAAAIENYISILDVETQVCRLKL-Q 721 (837)
Q Consensus 648 fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~-~~---~i~sl~~sp~-g~~llags~dg~I~iwDl~s~~~~~~l-~ 721 (837)
|+|++..++++++.|+.|++||+.+++++..+.. .. .|.+++|+|+ +.++++++.|+.|++||+++++.+..+ .
T Consensus 168 ~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~ 247 (615)
T 1pgu_A 168 LKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIED 247 (615)
T ss_dssp ECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCB
T ss_pred ECCCCCcEEEEEeCCCcEEEEeCCCcceeeeecccCCCCceEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCEeEEecc
Confidence 9999887888999999999999999999988875 44 6999999999 999999999999999999999999998 6
Q ss_pred ---CCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecC----CCceEEEEEeCCCCEEEEEEcCCeEE
Q 003236 722 ---GHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCT----GNKFHSCVFHPTFPSLLVIGCYETLE 793 (837)
Q Consensus 722 ---~h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~----~~~I~sv~fspdg~~L~sgs~dg~I~ 793 (837)
.|...|.+++|+ ++.+|++++ |+.|++||++++ ..+..+..+ ...+.++.|. ++.++++++.++.|+
T Consensus 248 ~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~---~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~g~i~ 322 (615)
T 1pgu_A 248 DQEPVQGGIFALSWL-DSQKFATVGADATIRVWDVTTS---KCVQKWTLDKQQLGNQQVGVVAT-GNGRIISLSLDGTLN 322 (615)
T ss_dssp TTBCCCSCEEEEEES-SSSEEEEEETTSEEEEEETTTT---EEEEEEECCTTCGGGCEEEEEEE-ETTEEEEEETTSCEE
T ss_pred cccccCCceEEEEEc-CCCEEEEEcCCCcEEEEECCCC---cEEEEEcCCCCcccCceeEEEeC-CCCeEEEEECCCCEE
Confidence 899999999999 999999999 999999999987 667776665 3567888886 889999999999999
Q ss_pred EEECCCCcEE-EeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 003236 794 LWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 837 (837)
Q Consensus 794 IwDl~s~~~~-~l~~h~~~V~sla~spdg~~LaSgs~DG~I~IWd 837 (837)
+||+.+++.+ .+..|...|++++| |+ |++++.||.|++||
T Consensus 323 ~~d~~~~~~~~~~~~~~~~v~~~~~-~~---l~~~~~dg~i~~w~ 363 (615)
T 1pgu_A 323 FYELGHDEVLKTISGHNKGITALTV-NP---LISGSYDGRIMEWS 363 (615)
T ss_dssp EEETTEEEEEEEECCCSSCEEEEET-TT---TEEEETTSCEEETT
T ss_pred EEECCCCcEEEEEeCCCCCEEEEEe-cC---cEEECCCCeEEEEE
Confidence 9999987776 67788888999988 77 77777888888875
|
| >2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-33 Score=306.82 Aligned_cols=273 Identities=23% Similarity=0.414 Sum_probs=216.8
Q ss_pred eEEcccCCCceEEeecCCCCCCCCccccccccCCCeeeeEEEEe-cC-CCCCeEEEEEcCCCCEEEEEECCCcEEEEeCC
Q 003236 508 FVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLI-PA-STSKVESCHFSPDGKLLATGGHDKKAVLWCTE 585 (837)
Q Consensus 508 ~v~~Gs~D~~v~~w~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l-~~-H~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~ 585 (837)
++++|+.|+.|++|...... +..+..+ .+ |.+.|++++|+|++++||+|+.|++|+|||+.
T Consensus 26 ~las~~~D~~i~lw~~~~~~-----------------~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~iw~~~ 88 (330)
T 2hes_X 26 ILATGSTDRKIKLVSVKYDD-----------------FTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDSTVSIWAKE 88 (330)
T ss_dssp EEEEEESSSCEEEEECSSSC-----------------CEEEEEECTTCCCSCEEEEEECTTSSEEEEEETTSCEEEEEC-
T ss_pred EEEEEcCCCEEEEEEecCCC-----------------eEEEEEEecCCccCCEEEEEECCCCCEEEEEeCCCcEEEEEcc
Confidence 89999999999999654321 1223344 34 99999999999999999999999999999984
Q ss_pred -------CCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCC---ceeEEeeccccceEEEEEcCCCCeE
Q 003236 586 -------SFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPD---YSLRTFTGHSTTVMSLDFHPSKEDL 655 (837)
Q Consensus 586 -------t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~~~---~~~~~~~~h~~~V~sl~fspdg~~l 655 (837)
..+.+..+.+|...|.+++|+|++++|++|+.|++|+|||+.... ..+..+.+|...|.+++|+|++. +
T Consensus 89 ~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~-~ 167 (330)
T 2hes_X 89 ESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEA-L 167 (330)
T ss_dssp ------CCCEEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSCEEEEEECSSSS-E
T ss_pred cCcCccccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCceEEEEECCCCC-E
Confidence 345678889999999999999999999999999999999995322 34677889999999999999976 6
Q ss_pred EEEEeCCCcEEEEECCCC--eeeeEEe-cCCCeeEEEEecC--CCEEEEEEcCCeEEEEECCCC--------eEEEEEcC
Q 003236 656 LCSCDNNSEIRYWSINNG--SCAGVFK-CQSGATQMRFQPR--LGRILAAAIENYISILDVETQ--------VCRLKLQG 722 (837)
Q Consensus 656 lasgs~Dg~I~vwDl~t~--~~i~~~~-~~~~i~sl~~sp~--g~~llags~dg~I~iwDl~s~--------~~~~~l~~ 722 (837)
|++++.|++|++||+.++ +++..+. +...|.+++|+|+ +..+++++.|+.|++||++.+ .+...+..
T Consensus 168 l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~ 247 (330)
T 2hes_X 168 LASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILPD 247 (330)
T ss_dssp EEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEECTTSCEEEEEEEECCS
T ss_pred EEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCCCccccceeEEeeeccc
Confidence 779999999999999876 5666665 4567999999998 678999999999999998754 44555555
Q ss_pred -CCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCC-ceEEEEEeC--CCCEEEEEEcCCeEEEEEC
Q 003236 723 -HKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGN-KFHSCVFHP--TFPSLLVIGCYETLELWNM 797 (837)
Q Consensus 723 -h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~-~I~sv~fsp--dg~~L~sgs~dg~I~IwDl 797 (837)
|...|.+++|++++ +|++++ |+.|+|||..++...........|.. .|.+++|+| ++.+|++++.|+.|+|||+
T Consensus 248 ~h~~~v~~v~~s~~~-~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~h~~~~v~~v~~~~~~~~~~las~s~Dg~v~~W~~ 326 (330)
T 2hes_X 248 VHKRQVYNVAWGFNG-LIASVGADGVLAVYEEVDGEWKVFAKRALCHGVYEINVVKWLELNGKTILATGGDDGIVNFWSL 326 (330)
T ss_dssp CCSSCEEEEEECTTS-CEEEEETTSCEEEEEEETTEEEEEEEESCTTTTSCEEEEEEC-----CCEEEEETTSEEEEEEC
T ss_pred ccccceEEEEEcCCC-EEEEEeCCCEEEEEEcCCCceEEEeccccccccceEEEEEEecCCCceEEEEecCCCcEEEEEe
Confidence 89999999999766 666666 99999999876521112223356766 899999999 6889999999999999998
Q ss_pred CC
Q 003236 798 TE 799 (837)
Q Consensus 798 ~s 799 (837)
.+
T Consensus 327 ~~ 328 (330)
T 2hes_X 327 EK 328 (330)
T ss_dssp --
T ss_pred cc
Confidence 64
|
| >3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-33 Score=309.33 Aligned_cols=288 Identities=17% Similarity=0.264 Sum_probs=243.6
Q ss_pred eeeEEEEecCCCCCeEEEEEcCC---CCEEEEEECCCcEEEEeCCC-CeEE-EEeccCCCCeEEEEEcCCCCEEEEEeCC
Q 003236 544 TFTEFQLIPASTSKVESCHFSPD---GKLLATGGHDKKAVLWCTES-FTVK-STLEEHTQWITDVRFSPSLSRLATSSAD 618 (837)
Q Consensus 544 ~~~~~~~l~~H~~~V~sl~fSpd---g~~Lasgs~Dg~I~VWd~~t-~~~~-~~l~~h~~~I~~l~fspdg~~Latgs~D 618 (837)
.+..+..+.+|.+.|+|++|+|+ |++|++|+.||.|+|||+.+ +..+ ..+.+|...|++++|+|++++|++++.|
T Consensus 28 ~~~~~~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d 107 (368)
T 3mmy_A 28 PMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCD 107 (368)
T ss_dssp TTCCEECSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEEEEEETT
T ss_pred CcceeEeccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEEEEEcCC
Confidence 44567788999999999999999 69999999999999999986 5554 7888999999999999999999999999
Q ss_pred CeEEEEEcCCCCceeEEeeccccceEEEEE--cCCCCeEEEEEeCCCcEEEEECCCCeeeeEEecCCCeeEEEEecCCCE
Q 003236 619 RTVRVWDTENPDYSLRTFTGHSTTVMSLDF--HPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGR 696 (837)
Q Consensus 619 g~I~IWDl~~~~~~~~~~~~h~~~V~sl~f--spdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~~~~i~sl~~sp~g~~ 696 (837)
|.|++||+.++. ...+..|...|.+++| ++++. +|++++.|+.|++||+++++.+..+..+..+.++.+.+ ..
T Consensus 108 g~v~iwd~~~~~--~~~~~~~~~~v~~~~~~~~~~~~-~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~--~~ 182 (368)
T 3mmy_A 108 KTAKMWDLSSNQ--AIQIAQHDAPVKTIHWIKAPNYS-CVMTGSWDKTLKFWDTRSSNPMMVLQLPERCYCADVIY--PM 182 (368)
T ss_dssp SEEEEEETTTTE--EEEEEECSSCEEEEEEEECSSCE-EEEEEETTSEEEEECSSCSSCSEEEECSSCEEEEEEET--TE
T ss_pred CcEEEEEcCCCC--ceeeccccCceEEEEEEeCCCCC-EEEEccCCCcEEEEECCCCcEEEEEecCCCceEEEecC--Ce
Confidence 999999999765 3446779999999999 77754 67799999999999999999999999888777777775 58
Q ss_pred EEEEEcCCeEEEEECCCCeEEEEEc--CCCCCEEEEEEcCCCCE----EEEEe-CCeEEEEEcCCCCCceeEEEeecCCC
Q 003236 697 ILAAAIENYISILDVETQVCRLKLQ--GHKNQVHSVCWNTSGEY----LASVS-DELVRVWSIGSGSKGECIHELSCTGN 769 (837)
Q Consensus 697 llags~dg~I~iwDl~s~~~~~~l~--~h~~~V~sl~~spdg~~----Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~ 769 (837)
+++++.++.+.+||++......... .+...+.++++.++... +++++ |+.|++||++.......+..+..|..
T Consensus 183 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~ 262 (368)
T 3mmy_A 183 AVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRS 262 (368)
T ss_dssp EEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHHHHSEEEECSEE
T ss_pred eEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCccccceeeeeeec
Confidence 8999999999999999865443332 24456677777665543 77777 99999999988754345556666654
Q ss_pred ------------ceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE-EeccCCCCeeEEEEeCCCCEEEEEECCCcEEEe
Q 003236 770 ------------KFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIW 836 (837)
Q Consensus 770 ------------~I~sv~fspdg~~L~sgs~dg~I~IwDl~s~~~~-~l~~h~~~V~sla~spdg~~LaSgs~DG~I~IW 836 (837)
.|.+++|+|++.+|++++.|+.|++||+.+++.+ .+..|...|++++|+|++.+|++|+.|+..+.|
T Consensus 263 ~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~s~d~~~~~~ 342 (368)
T 3mmy_A 263 NGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTSEQLDQPISACCFNHNGNIFAYASSYDWSKGH 342 (368)
T ss_dssp C----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSCEEEEEECTTSSCEEEEECCCSTTCG
T ss_pred ccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCCcEEEEecCCCCCceEEEECCCCCeEEEEecccccccc
Confidence 6999999999999999999999999999999887 677899999999999999999999998755443
|
| >1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A | Back alignment and structure |
|---|
Probab=100.00 E-value=8e-34 Score=308.90 Aligned_cols=277 Identities=14% Similarity=0.143 Sum_probs=241.6
Q ss_pred EEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCe---EEEEeccCCCCeEEEEEcCCCC-EEEEEeCCCeEEE
Q 003236 548 FQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFT---VKSTLEEHTQWITDVRFSPSLS-RLATSSADRTVRV 623 (837)
Q Consensus 548 ~~~l~~H~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~---~~~~l~~h~~~I~~l~fspdg~-~Latgs~Dg~I~I 623 (837)
+....+|.+.|++++|+|++++|++++.|+.|+|||+.++. ....+..|...|.+++|+|+++ +|++++.||.|++
T Consensus 4 ~~~~~~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~ 83 (342)
T 1yfq_A 4 VQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILK 83 (342)
T ss_dssp EECSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEE
T ss_pred eecccCCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCcEEEEEcCCCeEEE
Confidence 44566899999999999999999999999999999998776 3445558999999999999999 9999999999999
Q ss_pred EEc-CCCCceeEEeec--cccceEEEEEcCCCCeEEEEEeCCCcEEEEECCC---------CeeeeEEecCCCeeEEEEe
Q 003236 624 WDT-ENPDYSLRTFTG--HSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN---------GSCAGVFKCQSGATQMRFQ 691 (837)
Q Consensus 624 WDl-~~~~~~~~~~~~--h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t---------~~~i~~~~~~~~i~sl~~s 691 (837)
||+ .++. ...+.+ |...|.+++|+| +. ++++++.|+.|++||+++ ++++..+.+...+.+++|+
T Consensus 84 wd~~~~~~--~~~~~~~~~~~~v~~l~~~~-~~-~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 159 (342)
T 1yfq_A 84 VDLIGSPS--FQALTNNEANLGICRICKYG-DD-KLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTN 159 (342)
T ss_dssp ECSSSSSS--EEECBSCCCCSCEEEEEEET-TT-EEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEEC
T ss_pred EEeccCCc--eEeccccCCCCceEEEEeCC-CC-EEEEEcCCCeEEEEcccccccccccccCCeeeEEeeCCceEEEEec
Confidence 999 7754 477788 999999999999 54 677999999999999988 7777777778889999999
Q ss_pred cCCCEEEEEEcCCeEEEEECCC-Ce--EEEEEcCCCCCEEEEEEcC-CCCEEEEEe-CCeEEEEEcCCCC---CceeEEE
Q 003236 692 PRLGRILAAAIENYISILDVET-QV--CRLKLQGHKNQVHSVCWNT-SGEYLASVS-DELVRVWSIGSGS---KGECIHE 763 (837)
Q Consensus 692 p~g~~llags~dg~I~iwDl~s-~~--~~~~l~~h~~~V~sl~~sp-dg~~Lasgs-Dg~I~IwDl~s~~---~~~~i~~ 763 (837)
+++ +++++.++.|++||+++ +. .......|...|.+++|+| ++.+|++++ |+.|+||+++... ....+..
T Consensus 160 ~~~--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~ 237 (342)
T 1yfq_A 160 SSR--LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFA 237 (342)
T ss_dssp SSE--EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEE
T ss_pred CCc--EEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCccccccccee
Confidence 886 99999999999999998 43 3445556889999999999 999999999 9999999998751 0134455
Q ss_pred eecCCC---------ceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE-EeccC-CCCeeEEEEeCCCCEEEEEECCCc
Q 003236 764 LSCTGN---------KFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAH-DKLVSSLAASTVNGMVASASHDKC 832 (837)
Q Consensus 764 ~~~~~~---------~I~sv~fspdg~~L~sgs~dg~I~IwDl~s~~~~-~l~~h-~~~V~sla~spdg~~LaSgs~DG~ 832 (837)
+..|.. .|.+++|+|++.+|++++.|+.|++||+.+++.+ .+..| ...|++++ |++.+|++|+.||.
T Consensus 238 ~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~--~~~~~l~s~s~Dg~ 315 (342)
T 1yfq_A 238 FRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIA--CSDNILCLATSDDT 315 (342)
T ss_dssp EECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSSEEEEEE--ECSSEEEEEEECTH
T ss_pred eecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccHhHhhhhhcccCCCceEec--CCCCeEEEEecCCc
Confidence 666644 9999999999999999999999999999999877 66777 99999999 99999999999998
|
| >4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.2e-35 Score=331.52 Aligned_cols=282 Identities=19% Similarity=0.278 Sum_probs=224.1
Q ss_pred EEecCCCCCeEEEEEcC-CCCEEEEEECCCcEEEEeCCCCe--EEEEeccCCCCeEEEEEcC-CCCEEEEEeCCCeEEEE
Q 003236 549 QLIPASTSKVESCHFSP-DGKLLATGGHDKKAVLWCTESFT--VKSTLEEHTQWITDVRFSP-SLSRLATSSADRTVRVW 624 (837)
Q Consensus 549 ~~l~~H~~~V~sl~fSp-dg~~Lasgs~Dg~I~VWd~~t~~--~~~~l~~h~~~I~~l~fsp-dg~~Latgs~Dg~I~IW 624 (837)
....+|...|+||+|+| ++.+||+|+.||.|+|||+.+++ ....+.+|.+.|++|+|+| ++.+|++|+.||+|+||
T Consensus 113 ~~~~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iw 192 (435)
T 4e54_B 113 QKAAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQ 192 (435)
T ss_dssp CEEEECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEE
T ss_pred ccCCCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEe
Confidence 34567899999999999 56799999999999999998665 3455678999999999998 68999999999999999
Q ss_pred EcCCCCceeEEee---ccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeeEEecCCCeeEEEEecCCC-EEEEE
Q 003236 625 DTENPDYSLRTFT---GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLG-RILAA 700 (837)
Q Consensus 625 Dl~~~~~~~~~~~---~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~~~~i~sl~~sp~g~-~llag 700 (837)
|+++.. ...+. .+...+.+++|+|++. +|++|+.||.|++||++.........+...|.+++|+|++. .++++
T Consensus 193 d~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~-~l~~g~~dg~i~~wd~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~s~ 269 (435)
T 4e54_B 193 DFKGNI--LRVFASSDTINIWFCSLDVSASSR-MVVTGDNVGNVILLNMDGKELWNLRMHKKKVTHVALNPCCDWFLATA 269 (435)
T ss_dssp ETTSCE--EEEEECCSSCSCCCCCEEEETTTT-EEEEECSSSBEEEEESSSCBCCCSBCCSSCEEEEEECTTCSSEEEEE
T ss_pred eccCCc--eeEEeccCCCCccEEEEEECCCCC-EEEEEeCCCcEeeeccCcceeEEEecccceEEeeeecCCCceEEEEe
Confidence 998643 23322 2345678999999976 67799999999999997544333333467899999999876 57788
Q ss_pred EcCCeEEEEECCCCeEEE---EEcCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCC------c
Q 003236 701 AIENYISILDVETQVCRL---KLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGN------K 770 (837)
Q Consensus 701 s~dg~I~iwDl~s~~~~~---~l~~h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~------~ 770 (837)
+.|+.|++||+++.+... ...+|...|++++|+|++.+|++++ |+.|+|||+.++ .+...+..|.. .
T Consensus 270 s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~---~~~~~~~~~~~~~~~~~~ 346 (435)
T 4e54_B 270 SVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQW---DCPLGLIPHPHRHFQHLT 346 (435)
T ss_dssp ETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSS---SSEEEECCCCCCCCSSSC
T ss_pred cCcceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEcCCCEEEEEECCCC---ccceEEecccccccccce
Confidence 899999999998765332 3356999999999999999999999 999999999987 34444333321 2
Q ss_pred eEEEEEeCCCCEEEEEEc------------CCeEEEEECCCCcEE-Ee-ccCCCCeeEE-EEeCCCCEEEEEECCCcEEE
Q 003236 771 FHSCVFHPTFPSLLVIGC------------YETLELWNMTENKTL-TL-SAHDKLVSSL-AASTVNGMVASASHDKCVKI 835 (837)
Q Consensus 771 I~sv~fspdg~~L~sgs~------------dg~I~IwDl~s~~~~-~l-~~h~~~V~sl-a~spdg~~LaSgs~DG~I~I 835 (837)
+..+.|+|++..++++.. ++.|++||..+++.+ .+ .+|...|.++ +|+|+|.+|++|+ |+.|+|
T Consensus 347 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~~~~~~~v~s~~~fspdg~~lasg~-d~~i~i 425 (435)
T 4e54_B 347 PIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYDPESSGISSLNEFNPMGDTLASAM-GYHILI 425 (435)
T ss_dssp CCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEECCSSCCCCCCEEEECTTSSCEEEEC-SSEEEE
T ss_pred eEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEEeCCCCCcEEEEEEECCCCCEEEEEc-CCcEEE
Confidence 345567777777666643 247999999999887 33 4788889887 6999999999876 789999
Q ss_pred eC
Q 003236 836 WK 837 (837)
Q Consensus 836 Wd 837 (837)
||
T Consensus 426 W~ 427 (435)
T 4e54_B 426 WS 427 (435)
T ss_dssp CC
T ss_pred EE
Confidence 97
|
| >3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-34 Score=321.78 Aligned_cols=273 Identities=19% Similarity=0.349 Sum_probs=234.8
Q ss_pred CCeEEcccCCCceEEeecCCCCCCCCccccccccCCCeeeeEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCC
Q 003236 506 DRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTE 585 (837)
Q Consensus 506 ~~~v~~Gs~D~~v~~w~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~H~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~ 585 (837)
..++++|+.|++|++|..... .....+..|...|.+++|+|+|++||+|+.|+.|+|||+.
T Consensus 78 ~~~l~s~s~D~~v~iWd~~~~-------------------~~~~~~~~h~~~v~~~~~s~~g~~las~~~d~~v~iw~~~ 138 (380)
T 3iz6_a 78 KNWIVSASQDGRLIVWNALTS-------------------QKTHAIKLHCPWVMECAFAPNGQSVACGGLDSACSIFNLS 138 (380)
T ss_dssp SSCEEEEETTSEEEEEETTTT-------------------EEEEEEECCCTTCCCCEECTTSSEEEECCSSSCCEEEECC
T ss_pred CCEEEEEeCCCeEEEEECCCC-------------------ccceEEecCCCCEEEEEECCCCCEEEEeeCCCcEEEEECC
Confidence 368899999999999965332 2456778999999999999999999999999999999986
Q ss_pred CCe-------EEEEeccCCCCeEEEEEcCC-CCEEEEEeCCCeEEEEEcCCCCceeEEe-----eccccceEEEEEcCCC
Q 003236 586 SFT-------VKSTLEEHTQWITDVRFSPS-LSRLATSSADRTVRVWDTENPDYSLRTF-----TGHSTTVMSLDFHPSK 652 (837)
Q Consensus 586 t~~-------~~~~l~~h~~~I~~l~fspd-g~~Latgs~Dg~I~IWDl~~~~~~~~~~-----~~h~~~V~sl~fspdg 652 (837)
+.. ....+.+|.+.|.++.|.|+ +..|++|+.|++|++||+.++.. +..+ .+|...|.+++|++.+
T Consensus 139 ~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~-~~~~~~~~~~~h~~~v~~~~~~~~~ 217 (380)
T 3iz6_a 139 SQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQR-ISIFGSEFPSGHTADVLSLSINSLN 217 (380)
T ss_dssp CCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCE-EEEECCCSSSSCCSCEEEEEECSSS
T ss_pred CCccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcE-EEEeecccCCCCccCeEEEEeecCC
Confidence 532 34567899999999999996 56799999999999999998764 4444 6799999999999866
Q ss_pred CeEEEEEeCCCcEEEEECC-CCeeeeEEe-cCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEcCCCC-----
Q 003236 653 EDLLCSCDNNSEIRYWSIN-NGSCAGVFK-CQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKN----- 725 (837)
Q Consensus 653 ~~llasgs~Dg~I~vwDl~-t~~~i~~~~-~~~~i~sl~~sp~g~~llags~dg~I~iwDl~s~~~~~~l~~h~~----- 725 (837)
..+|++|+.|+.|++||++ .+.++..+. +...|.+++|+|++.+|++++.|+.|++||++++..+..+..+..
T Consensus 218 ~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~ 297 (380)
T 3iz6_a 218 ANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNE 297 (380)
T ss_dssp CCEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSSEEEEECSSSCEEEEETTTTEEEEEECCCCSSSCCS
T ss_pred CCEEEEEECCCeEEEEECCCCCcceEEECCcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCCcEEEEecccccccccc
Confidence 6788899999999999998 456666665 456799999999999999999999999999999998888765432
Q ss_pred --CEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEe----ecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECC
Q 003236 726 --QVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHEL----SCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMT 798 (837)
Q Consensus 726 --~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~----~~~~~~I~sv~fspdg~~L~sgs~dg~I~IwDl~ 798 (837)
.|++++|+|++.+|++++ |+.|+|||+..+ +.+..+ ..|...|.+++|+|++.+|++++.|+.|+||++.
T Consensus 298 ~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~---~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~iW~~~ 374 (380)
T 3iz6_a 298 LPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLA---EMVLNLGTLQNSHEGRISCLGLSSDGSALCTGSWDKNLKIWAFS 374 (380)
T ss_dssp SCSCSEEEECSSSSEEEEECTTSCEEEEETTTC---CEEEEECCSCSSCCCCCCEEEECSSSSEEEEECTTSCEEEEECC
T ss_pred cCceEEEEECCCCCEEEEEECCCCEEEEECCCC---ceEEEEecccCCCCCceEEEEECCCCCEEEEeeCCCCEEEEecC
Confidence 489999999999999999 999999999877 455444 5788999999999999999999999999999987
Q ss_pred CCc
Q 003236 799 ENK 801 (837)
Q Consensus 799 s~~ 801 (837)
..+
T Consensus 375 ~~~ 377 (380)
T 3iz6_a 375 GHR 377 (380)
T ss_dssp SSS
T ss_pred CCc
Confidence 654
|
| >2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-33 Score=303.08 Aligned_cols=250 Identities=19% Similarity=0.293 Sum_probs=212.6
Q ss_pred EEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCC--CeEEEEeccCCCCeEEEEEcCC--CCEEEEEeCCCeEEEE
Q 003236 549 QLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES--FTVKSTLEEHTQWITDVRFSPS--LSRLATSSADRTVRVW 624 (837)
Q Consensus 549 ~~l~~H~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t--~~~~~~l~~h~~~I~~l~fspd--g~~Latgs~Dg~I~IW 624 (837)
..+.+|.+.|++++|+|+|++||+|+.|++|+|||+.+ .+.+.++.+|.+.|++++|+++ +.+|++|+.|++|+||
T Consensus 3 ~~~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iW 82 (297)
T 2pm7_B 3 VIANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIW 82 (297)
T ss_dssp EECCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEE
T ss_pred eeccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEEE
Confidence 46789999999999999999999999999999999974 4677899999999999999863 8999999999999999
Q ss_pred EcCCCC-ceeEEeeccccceEEEEEcCCC-CeEEEEEeCCCcEEEEECCCCee--eeEE-ecCCCeeEEEEecC------
Q 003236 625 DTENPD-YSLRTFTGHSTTVMSLDFHPSK-EDLLCSCDNNSEIRYWSINNGSC--AGVF-KCQSGATQMRFQPR------ 693 (837)
Q Consensus 625 Dl~~~~-~~~~~~~~h~~~V~sl~fspdg-~~llasgs~Dg~I~vwDl~t~~~--i~~~-~~~~~i~sl~~sp~------ 693 (837)
|+.++. ..+..+.+|...|.+++|+|+. ..+|++++.|+.|++||++++.. ...+ .+...+.+++|+|+
T Consensus 83 d~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~ 162 (297)
T 2pm7_B 83 KEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDG 162 (297)
T ss_dssp EBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEECCCC-----
T ss_pred EcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeecccCccceEeecCCcccccc
Confidence 998764 2456678899999999999972 34777999999999999987632 2223 34567999999997
Q ss_pred -------CCEEEEEEcCCeEEEEECCCCe----EEEEEcCCCCCEEEEEEcCCC---CEEEEEe-CCeEEEEEcCCCCCc
Q 003236 694 -------LGRILAAAIENYISILDVETQV----CRLKLQGHKNQVHSVCWNTSG---EYLASVS-DELVRVWSIGSGSKG 758 (837)
Q Consensus 694 -------g~~llags~dg~I~iwDl~s~~----~~~~l~~h~~~V~sl~~spdg---~~Lasgs-Dg~I~IwDl~s~~~~ 758 (837)
+..|++++.|+.|++||++++. ....+.+|...|.+++|+|++ .+|++++ |++|+|||+++....
T Consensus 163 ~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~~~~~~ 242 (297)
T 2pm7_B 163 EHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDNEQGP 242 (297)
T ss_dssp -------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSC
T ss_pred cCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCceEEEEEECCCcEEEEEeCCCCCc
Confidence 4689999999999999998764 667888999999999999985 7899998 999999999875321
Q ss_pred eeEEEe--ecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECC
Q 003236 759 ECIHEL--SCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMT 798 (837)
Q Consensus 759 ~~i~~~--~~~~~~I~sv~fspdg~~L~sgs~dg~I~IwDl~ 798 (837)
.....+ ..+...|.+++|+|++.+|++++.|+.|+||+..
T Consensus 243 ~~~~~~~~~~~~~~v~~~~~s~~g~~las~~~D~~v~lw~~~ 284 (297)
T 2pm7_B 243 WKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKEN 284 (297)
T ss_dssp CEEEESSSSCCSSCEEEEEECSSSCCEEEEETTSCEEEEEEC
T ss_pred cceeeeecccCCCcEEEEEECCCCCEEEEEcCCCcEEEEEEC
Confidence 222233 4567889999999999999999999999999976
|
| >3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.2e-34 Score=321.02 Aligned_cols=278 Identities=18% Similarity=0.332 Sum_probs=231.2
Q ss_pred CCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCe-----------EEEEeccCC------------CCeEEEEEcCCC
Q 003236 553 ASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFT-----------VKSTLEEHT------------QWITDVRFSPSL 609 (837)
Q Consensus 553 ~H~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~-----------~~~~l~~h~------------~~I~~l~fspdg 609 (837)
.|.+.|++|+|+|+|++||+|+.||.|+|||+.+++ ....+.+|. ..|++++|+|++
T Consensus 26 ~~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~ 105 (447)
T 3dw8_B 26 AEADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQK 105 (447)
T ss_dssp CGGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCC
T ss_pred cccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCC
Confidence 367899999999999999999999999999998876 577888998 889999999998
Q ss_pred --CEEEEEeCCCeEEEEEcCCCCce--------------------------------------e-EEeeccccceEEEEE
Q 003236 610 --SRLATSSADRTVRVWDTENPDYS--------------------------------------L-RTFTGHSTTVMSLDF 648 (837)
Q Consensus 610 --~~Latgs~Dg~I~IWDl~~~~~~--------------------------------------~-~~~~~h~~~V~sl~f 648 (837)
.+|++++.|++|++||+.+.... . ....+|...|.+++|
T Consensus 106 ~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~ 185 (447)
T 3dw8_B 106 NAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISI 185 (447)
T ss_dssp SSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEE
T ss_pred CcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEEE
Confidence 79999999999999998753321 1 123679999999999
Q ss_pred cCCCCeEEEEEeCCCcEEEEECCC-CeeeeEE--------ecCCCeeEEEEecCC-CEEEEEEcCCeEEEEECCCCeE--
Q 003236 649 HPSKEDLLCSCDNNSEIRYWSINN-GSCAGVF--------KCQSGATQMRFQPRL-GRILAAAIENYISILDVETQVC-- 716 (837)
Q Consensus 649 spdg~~llasgs~Dg~I~vwDl~t-~~~i~~~--------~~~~~i~sl~~sp~g-~~llags~dg~I~iwDl~s~~~-- 716 (837)
+|++. +|++| .|+.|++||+++ +.++..+ .+...|.+++|+|++ ..|++++.|+.|++||++++..
T Consensus 186 ~~~~~-~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~ 263 (447)
T 3dw8_B 186 NSDYE-TYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCD 263 (447)
T ss_dssp CTTSS-EEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSSSC
T ss_pred cCCCC-EEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCcccc
Confidence 99977 55577 699999999994 4454433 245679999999998 8999999999999999999876
Q ss_pred --EEEEcCCCC------------CEEEEEEcCCCCEEEEEeCCeEEEEEcCC-CCCceeEEEeecCCCc-----------
Q 003236 717 --RLKLQGHKN------------QVHSVCWNTSGEYLASVSDELVRVWSIGS-GSKGECIHELSCTGNK----------- 770 (837)
Q Consensus 717 --~~~l~~h~~------------~V~sl~~spdg~~LasgsDg~I~IwDl~s-~~~~~~i~~~~~~~~~----------- 770 (837)
+..+..|.. .|.+++|+|++.+|++++++.|+|||+++ + .++..+..|...
T Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~v~iwd~~~~~---~~~~~~~~~~~~~~~l~~~~~~~ 340 (447)
T 3dw8_B 264 RHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDYLSVKVWDLNMEN---RPVETYQVHEYLRSKLCSLYEND 340 (447)
T ss_dssp TTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEESSEEEEEETTCCS---SCSCCEESCGGGTTTHHHHHHTS
T ss_pred ceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeCCeEEEEeCCCCc---cccceeecccccccccccccccc
Confidence 778888876 89999999999999999899999999987 4 455555555421
Q ss_pred ----eEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEEEeccC---------------------------------CCCee
Q 003236 771 ----FHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSAH---------------------------------DKLVS 813 (837)
Q Consensus 771 ----I~sv~fspdg~~L~sgs~dg~I~IwDl~s~~~~~l~~h---------------------------------~~~V~ 813 (837)
+..++|+|++.+|++++.|+.|++||+.+++.+.+..| ...|.
T Consensus 341 ~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 420 (447)
T 3dw8_B 341 CIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDITLEASRENNKPRTVLKPRKVCASGKRKKDEISVDSLDFNKKIL 420 (447)
T ss_dssp GGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCCEEEEECCSTTCCTTCBCCCCCEECSSCCCTTCEEGGGCCTTSCCC
T ss_pred ccccceEEEECCCCCEEEEeccCCEEEEEEcCCCcceeeeecccccccccccCCccccccCCcccccccccccccCCcee
Confidence 33489999999999999999999999999988765443 35688
Q ss_pred EEEEeCCCCEEEEEECCCcEEEe
Q 003236 814 SLAASTVNGMVASASHDKCVKIW 836 (837)
Q Consensus 814 sla~spdg~~LaSgs~DG~I~IW 836 (837)
+++|+|++.+||+++.|+ ++||
T Consensus 421 ~~~~~p~~~~la~~~~~~-~~~~ 442 (447)
T 3dw8_B 421 HTAWHPKENIIAVATTNN-LYIF 442 (447)
T ss_dssp EEEECSSSSEEEEECSSC-EEEE
T ss_pred EEEECCCCCEEEEEecce-eeee
Confidence 999999999999998876 6666
|
| >3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A | Back alignment and structure |
|---|
Probab=100.00 E-value=9.8e-34 Score=305.89 Aligned_cols=285 Identities=18% Similarity=0.217 Sum_probs=218.8
Q ss_pred EEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCC----eEEEEeccCCCCeEEEEEcC--CCCEEEEEeCCCeEE
Q 003236 549 QLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESF----TVKSTLEEHTQWITDVRFSP--SLSRLATSSADRTVR 622 (837)
Q Consensus 549 ~~l~~H~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~----~~~~~l~~h~~~I~~l~fsp--dg~~Latgs~Dg~I~ 622 (837)
..+.+|.+.|++++|+|++++||+|+.||.|+|||+.++ +....+.+|...|++++|+| ++.+|++++.||.|+
T Consensus 5 ~~~~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~ 84 (351)
T 3f3f_A 5 PFDSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVK 84 (351)
T ss_dssp CEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEE
T ss_pred ccCcccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEE
Confidence 346799999999999999999999999999999999876 56778889999999999999 699999999999999
Q ss_pred EEEcCCCC--------ceeEEeeccccceEEEEEcCC--CCeEEEEEeCCCcEEEEECCCCeeeeEEe------------
Q 003236 623 VWDTENPD--------YSLRTFTGHSTTVMSLDFHPS--KEDLLCSCDNNSEIRYWSINNGSCAGVFK------------ 680 (837)
Q Consensus 623 IWDl~~~~--------~~~~~~~~h~~~V~sl~fspd--g~~llasgs~Dg~I~vwDl~t~~~i~~~~------------ 680 (837)
+||+.++. ..+..+..|...|.+++|+|+ +. ++++++.|+.|++||+++++.+..+.
T Consensus 85 vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~ 163 (351)
T 3f3f_A 85 LWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGL-KLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPP 163 (351)
T ss_dssp EEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCS-EEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCC
T ss_pred EEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCc-EEEEecCCCcEEEecCCChHHhcccccccccccccccc
Confidence 99998764 346778889999999999998 65 66688999999999999877554432
Q ss_pred --cCCCeeEEEEecC---CCEEEEEEcCCeEEEEECCCCeE--EEEEcCCCCCEEEEEEcCCC----CEEEEEe-CCeEE
Q 003236 681 --CQSGATQMRFQPR---LGRILAAAIENYISILDVETQVC--RLKLQGHKNQVHSVCWNTSG----EYLASVS-DELVR 748 (837)
Q Consensus 681 --~~~~i~sl~~sp~---g~~llags~dg~I~iwDl~s~~~--~~~l~~h~~~V~sl~~spdg----~~Lasgs-Dg~I~ 748 (837)
+...+.++.|+|+ +..+++++.++.+.+|+...+.. +..+.+|...|++++|+|++ .+|++++ |+.|+
T Consensus 164 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~ 243 (351)
T 3f3f_A 164 ANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIR 243 (351)
T ss_dssp SSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSEEEEEEETTSCEE
T ss_pred CCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcceEEEEEcCCCeEE
Confidence 3456899999997 89999999999998888887754 77788899999999999998 7899988 99999
Q ss_pred EEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEc----CCeEEEEECCCCcEE-EeccCCCCeeEEEEeCCCCE
Q 003236 749 VWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGC----YETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGM 823 (837)
Q Consensus 749 IwDl~s~~~~~~i~~~~~~~~~I~sv~fspdg~~L~sgs~----dg~I~IwDl~s~~~~-~l~~h~~~V~sla~spdg~~ 823 (837)
+||++.+. ...........+....+.+....+..+.. ...+.+|+....+.+ .+.+|...|++++|+|++++
T Consensus 244 iwd~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~ 320 (351)
T 3f3f_A 244 IFKITEKL---SPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVWSVSWNLTGTI 320 (351)
T ss_dssp EEEEEECC------------------------------------------CCSEEEEEEEEECTTSSCEEEEEECSSSCC
T ss_pred EEeCCCCc---CccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEEEecccccEEEEEEcCCCCE
Confidence 99998763 22222222233333344444433333332 335556655555555 67789999999999999999
Q ss_pred EEEEECCCcEEEeC
Q 003236 824 VASASHDKCVKIWK 837 (837)
Q Consensus 824 LaSgs~DG~I~IWd 837 (837)
|++|+.||.|+|||
T Consensus 321 l~s~~~dg~v~iw~ 334 (351)
T 3f3f_A 321 LSSAGDDGKVRLWK 334 (351)
T ss_dssp EEEEETTSCEEEEE
T ss_pred EEEecCCCcEEEEe
Confidence 99999999999996
|
| >4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.9e-33 Score=311.87 Aligned_cols=280 Identities=18% Similarity=0.335 Sum_probs=240.5
Q ss_pred EecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEecc-CCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCC
Q 003236 550 LIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEE-HTQWITDVRFSPSLSRLATSSADRTVRVWDTEN 628 (837)
Q Consensus 550 ~l~~H~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~-h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~ 628 (837)
...+|...+.+.++++++..+++++.|+.|+|||+.+++....+.. |...|++++|+|++.+|++|+.||.|++||+.+
T Consensus 86 ~~~~~~~~~~~~~~~~s~~~l~~~~~d~~v~lw~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~ 165 (401)
T 4aez_A 86 DAPGIIDDYYLNLLDWSNLNVVAVALERNVYVWNADSGSVSALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVES 165 (401)
T ss_dssp ECTTCCCCTTCBCEEECTTSEEEEEETTEEEEEETTTCCEEEEEECCTTCCEEEEEECTTSSEEEEEETTSCEEEEETTT
T ss_pred eCCCCcCCceEEEEeecCCCEEEEECCCeEEEeeCCCCcEeEeeecCCCCCEEEEEECCCCCEEEEECCCCeEEEEECcC
Confidence 3446766654433333345678888999999999999998877765 889999999999999999999999999999998
Q ss_pred CCceeEEeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECC-CCeeeeEEe-cCCCeeEEEEecCCCEEEEEEcCCeE
Q 003236 629 PDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSIN-NGSCAGVFK-CQSGATQMRFQPRLGRILAAAIENYI 706 (837)
Q Consensus 629 ~~~~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~-t~~~i~~~~-~~~~i~sl~~sp~g~~llags~dg~I 706 (837)
++ .+..+.+|...|.+++|++ .++++++.||.|++||++ ....+..+. +...|.+++|+|++..|++++.|+.|
T Consensus 166 ~~-~~~~~~~~~~~v~~~~~~~---~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v 241 (401)
T 4aez_A 166 QT-KLRTMAGHQARVGCLSWNR---HVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGLQLASGGNDNVV 241 (401)
T ss_dssp CC-EEEEECCCSSCEEEEEEET---TEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCE
T ss_pred Ce-EEEEecCCCCceEEEEECC---CEEEEEcCCCCEEEEecccCcceeeEEcCCCCCeeEEEEcCCCCEEEEEeCCCeE
Confidence 66 4778889999999999953 478899999999999998 455555554 46789999999999999999999999
Q ss_pred EEEECCCCeEEEEEcCCCCCEEEEEEcCCC-CEEEEEe---CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCE
Q 003236 707 SILDVETQVCRLKLQGHKNQVHSVCWNTSG-EYLASVS---DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPS 782 (837)
Q Consensus 707 ~iwDl~s~~~~~~l~~h~~~V~sl~~spdg-~~Lasgs---Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fspdg~~ 782 (837)
++||++++..+..+..|...|.+++|+|++ .++++++ |+.|++||+.++ .++..+. +...+.+++|+|++.+
T Consensus 242 ~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~---~~~~~~~-~~~~v~~~~~s~~~~~ 317 (401)
T 4aez_A 242 QIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATG---ARVNTVD-AGSQVTSLIWSPHSKE 317 (401)
T ss_dssp EEEETTCSSEEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTC---CEEEEEE-CSSCEEEEEECSSSSE
T ss_pred EEccCCCCCccEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCC---CEEEEEe-CCCcEEEEEECCCCCe
Confidence 999999999999999999999999999976 5666654 899999999987 5565554 5678999999999999
Q ss_pred EEEEE--cCCeEEEEECCCCcEE---EeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 003236 783 LLVIG--CYETLELWNMTENKTL---TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 837 (837)
Q Consensus 783 L~sgs--~dg~I~IwDl~s~~~~---~l~~h~~~V~sla~spdg~~LaSgs~DG~I~IWd 837 (837)
|++++ .|+.|++||+.+++.. .+.+|...|.+++|+|++.+|++++.||.|+|||
T Consensus 318 l~~~~g~~dg~i~v~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~~~dg~i~iw~ 377 (401)
T 4aez_A 318 IMSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDTRVLYSALSPDGRILSTAASDENLKFWR 377 (401)
T ss_dssp EEEEECTTTCEEEEEEEETTEEEEEEEEECCSSCCCEEEECTTSSEEEEECTTSEEEEEE
T ss_pred EEEEeecCCCcEEEEecCCccceeEEEecCCCCCEEEEEECCCCCEEEEEeCCCcEEEEE
Confidence 99965 7999999999987655 4678999999999999999999999999999996
|
| >4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.1e-33 Score=308.44 Aligned_cols=289 Identities=19% Similarity=0.360 Sum_probs=237.6
Q ss_pred EEEEecCCCCCeEEEEEcC-CCCEEEEEECCCcEEEEeCCCCeEEEEe-------------ccCCCCeEEEEEcC-CCCE
Q 003236 547 EFQLIPASTSKVESCHFSP-DGKLLATGGHDKKAVLWCTESFTVKSTL-------------EEHTQWITDVRFSP-SLSR 611 (837)
Q Consensus 547 ~~~~l~~H~~~V~sl~fSp-dg~~Lasgs~Dg~I~VWd~~t~~~~~~l-------------~~h~~~I~~l~fsp-dg~~ 611 (837)
....+.+|.+.|++++|+| ++++||+|+.||.|+|||+.++.....+ .+|...|.+++|+| ++.+
T Consensus 35 ~~~~~~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 114 (408)
T 4a11_B 35 DRDVERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGM 114 (408)
T ss_dssp TEEECCCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTTC
T ss_pred ceeeeeccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCCcE
Confidence 3567789999999999999 9999999999999999999876554333 25999999999999 7889
Q ss_pred EEEEeCCCeEEEEEcCCCCceeEEeeccccceEEEEEcCCCC--eEEEEEeCCCcEEEEECCCCeeeeEEe-cCCCeeEE
Q 003236 612 LATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKE--DLLCSCDNNSEIRYWSINNGSCAGVFK-CQSGATQM 688 (837)
Q Consensus 612 Latgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~sl~fspdg~--~llasgs~Dg~I~vwDl~t~~~i~~~~-~~~~i~sl 688 (837)
|++++.||.|++||+.++.. ...+. +...+.++.|++.+. .++++++.|+.|++||+++++.+..+. +...|.++
T Consensus 115 l~s~~~d~~i~iwd~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~v~~~ 192 (408)
T 4a11_B 115 FTSSSFDKTLKVWDTNTLQT-ADVFN-FEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQGHRQEILAV 192 (408)
T ss_dssp EEEEETTSEEEEEETTTTEE-EEEEE-CSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCCEEECCCCSCEEEE
T ss_pred EEEEeCCCeEEEeeCCCCcc-ceecc-CCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcceeeeecCCCCcEEEE
Confidence 99999999999999998653 44443 778899999998643 378899999999999999998888877 46679999
Q ss_pred EEecCCC-EEEEEEcCCeEEEEECCCCe-EEEEE---------------cCCCCCEEEEEEcCCCCEEEEEe-CCeEEEE
Q 003236 689 RFQPRLG-RILAAAIENYISILDVETQV-CRLKL---------------QGHKNQVHSVCWNTSGEYLASVS-DELVRVW 750 (837)
Q Consensus 689 ~~sp~g~-~llags~dg~I~iwDl~s~~-~~~~l---------------~~h~~~V~sl~~spdg~~Lasgs-Dg~I~Iw 750 (837)
+|+|++. .+++++.|+.|++||++++. ++..+ ..|...|.+++|+|++.+|++++ |+.|++|
T Consensus 193 ~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw 272 (408)
T 4a11_B 193 SWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLW 272 (408)
T ss_dssp EECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred EECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCCEEEEecCCCeEEEE
Confidence 9999998 48899999999999998764 44444 46888999999999999999998 9999999
Q ss_pred EcCCCCCceeEEEe--ecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE-EeccCCCCeeEEEEeCCCCEEEEE
Q 003236 751 SIGSGSKGECIHEL--SCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASA 827 (837)
Q Consensus 751 Dl~s~~~~~~i~~~--~~~~~~I~sv~fspdg~~L~sgs~dg~I~IwDl~s~~~~-~l~~h~~~V~sla~spdg~~LaSg 827 (837)
|+.++......... ......+........+..+++++.++.|++||+.+++.+ .+.+|...|++++|+|++.+|+++
T Consensus 273 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~ 352 (408)
T 4a11_B 273 NSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLKGHYKTVDCCVFQSNFQELYSG 352 (408)
T ss_dssp ETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEEECCCSSCEEEEEEETTTTEEEEE
T ss_pred ECCCCccceeccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCCcceeeeccCCCeEEEEEEcCCCCEEEEE
Confidence 99987432111110 111122222233344566888889999999999999888 677899999999999999999999
Q ss_pred ECCCcEEEeC
Q 003236 828 SHDKCVKIWK 837 (837)
Q Consensus 828 s~DG~I~IWd 837 (837)
+.||.|+|||
T Consensus 353 ~~dg~i~iw~ 362 (408)
T 4a11_B 353 SRDCNILAWV 362 (408)
T ss_dssp ETTSCEEEEE
T ss_pred CCCCeEEEEe
Confidence 9999999996
|
| >3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.8e-34 Score=320.51 Aligned_cols=274 Identities=16% Similarity=0.213 Sum_probs=234.8
Q ss_pred CeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeEEe
Q 003236 557 KVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTF 636 (837)
Q Consensus 557 ~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~~~~~~~~~ 636 (837)
.+++++|+|++++|++|+.|+.|++||+.+++....+..| ..+....|++++++|++++.||.|+|||+.++. ....+
T Consensus 58 ~~~~~~~s~~g~~l~~~~~d~~v~i~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~-~~~~~ 135 (420)
T 3vl1_A 58 AGKGNTFEKVGSHLYKARLDGHDFLFNTIIRDGSKMLKRA-DYTAVDTAKLQMRRFILGTTEGDIKVLDSNFNL-QREID 135 (420)
T ss_dssp CCTTCEEEEEETTEEEEEETTEEEEEECCSEETTTTSCSC-CEEEEEEECSSSCEEEEEETTSCEEEECTTSCE-EEEET
T ss_pred cccceeeeecCCeEEEEEcCCcEEEEEecccceeeEEecC-CceEEEEEecCCCEEEEEECCCCEEEEeCCCcc-eeeec
Confidence 3558999999999999999999999999987777666666 455666789999999999999999999998754 46677
Q ss_pred eccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeeEEe-cCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCe
Q 003236 637 TGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK-CQSGATQMRFQPRLGRILAAAIENYISILDVETQV 715 (837)
Q Consensus 637 ~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~-~~~~i~sl~~sp~g~~llags~dg~I~iwDl~s~~ 715 (837)
.+|...|.+++|+|++. +|++++.|+.|++||+.+++.+..+. +...|.+++|+|++..|++++.|+.|++||+++++
T Consensus 136 ~~h~~~v~~~~~~~~~~-~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~ 214 (420)
T 3vl1_A 136 QAHVSEITKLKFFPSGE-ALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGT 214 (420)
T ss_dssp TSSSSCEEEEEECTTSS-EEEEEETTSEEEEEETTTCCCCEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTE
T ss_pred ccccCccEEEEECCCCC-EEEEEeCCCeEEEEeCCCCcCceEEcCCCCcEEEEEEcCCCCEEEEEcCCCcEEEeECCCCc
Confidence 89999999999999976 67799999999999999999888887 46779999999999999999999999999999999
Q ss_pred EEEEEcC---CCCCEEEEE---------------------EcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEe-ecCCC
Q 003236 716 CRLKLQG---HKNQVHSVC---------------------WNTSGEYLASVS-DELVRVWSIGSGSKGECIHEL-SCTGN 769 (837)
Q Consensus 716 ~~~~l~~---h~~~V~sl~---------------------~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~-~~~~~ 769 (837)
.+..+.. |...|.+++ |+|++.+|++++ |+.|++||++++ ..+..+ ..|..
T Consensus 215 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~---~~~~~~~~~~~~ 291 (420)
T 3vl1_A 215 TIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSK---EQTIQLPSKFTC 291 (420)
T ss_dssp EEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTC---CEEEEECCTTSS
T ss_pred eeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCC---ceeEEcccccCC
Confidence 9988875 444555554 578899999998 999999999987 344443 45788
Q ss_pred ceEEEEEeCCCC-EEEEEEcCCeEEEEECCCCcE-E-Eecc-CCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 003236 770 KFHSCVFHPTFP-SLLVIGCYETLELWNMTENKT-L-TLSA-HDKLVSSLAASTVNGMVASASHDKCVKIWK 837 (837)
Q Consensus 770 ~I~sv~fspdg~-~L~sgs~dg~I~IwDl~s~~~-~-~l~~-h~~~V~sla~spdg~~LaSgs~DG~I~IWd 837 (837)
.|.+++|+|++. +|++++.|+.|++||+.+++. + .+.. |...|.++.| +++++|++++.||.|+|||
T Consensus 292 ~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~l~s~~~d~~v~iw~ 362 (420)
T 3vl1_A 292 SCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFLINEGTPINNVYF-AAGALFVSSGFDTSIKLDI 362 (420)
T ss_dssp CEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEESTTSCEEEEEE-ETTEEEEEETTTEEEEEEE
T ss_pred CceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhhhccCCCCceEEEe-CCCCEEEEecCCccEEEEe
Confidence 999999999999 999999999999999998754 2 5554 7778888865 5788999999999999996
|
| >4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-32 Score=309.26 Aligned_cols=270 Identities=22% Similarity=0.404 Sum_probs=233.3
Q ss_pred eEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEe--ccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeEE
Q 003236 558 VESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTL--EEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRT 635 (837)
Q Consensus 558 V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l--~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~~~~~~~~ 635 (837)
++.|+||+++ +||+|. |++|+|||+.++++...+ .+|...|++|+|+|+|++|++|+.||+|+|||+.+++ .+..
T Consensus 108 ~~~l~wS~~n-~lAvgl-d~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~-~~~~ 184 (420)
T 4gga_A 108 LNLVDWSSGN-VLAVAL-DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQK-RLRN 184 (420)
T ss_dssp CBCEEECTTS-EEEEEE-TTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTE-EEEE
T ss_pred ceeEEECCCC-EEEEEe-CCEEEEEECCCCCEEEEEEecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCc-EEEE
Confidence 5679999764 888775 899999999999887665 4678899999999999999999999999999999865 4788
Q ss_pred eeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCe-eeeEEe-cCCCeeEEEEecCCCEEEEEEcCCeEEEEECCC
Q 003236 636 FTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS-CAGVFK-CQSGATQMRFQPRLGRILAAAIENYISILDVET 713 (837)
Q Consensus 636 ~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~-~i~~~~-~~~~i~sl~~sp~g~~llags~dg~I~iwDl~s 713 (837)
+.+|...|.++++++ .++++|+.|+.+++||..... .+..+. +...+..+.+++++..+++++.|+.|++||..+
T Consensus 185 ~~~h~~~v~~~s~~~---~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~ 261 (420)
T 4gga_A 185 MTSHSARVGSLSWNS---YILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAP 261 (420)
T ss_dssp ECCCSSCEEEEEEET---TEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSC
T ss_pred EeCCCCceEEEeeCC---CEEEEEeCCCceeEeeecccceeeEEecccccceeeeeecCCCCeeeeeeccccceEEeecc
Confidence 999999999999874 478899999999999998644 344444 456799999999999999999999999999987
Q ss_pred Ce----EEEEEcCCCCCEEEEEEcCCCC-EEEEE--e-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEE
Q 003236 714 QV----CRLKLQGHKNQVHSVCWNTSGE-YLASV--S-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLV 785 (837)
Q Consensus 714 ~~----~~~~l~~h~~~V~sl~~spdg~-~Lasg--s-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fspdg~~L~s 785 (837)
++ .+.....|...|.+++|+|++. +++++ + |+.|+|||+.++ .++..+.. ...+.++.|++++..+++
T Consensus 262 ~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~---~~~~~~~~-~~~v~~~~~~~~~~~lv~ 337 (420)
T 4gga_A 262 GEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSG---ACLSAVDA-HSQVCSILWSPHYKELIS 337 (420)
T ss_dssp CSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTT---EEEEEEEC-SSCEEEEEEETTTTEEEE
T ss_pred ccccceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCcc---ccceeecc-ccceeeeeecCCCCeEEE
Confidence 64 4566778999999999999754 55554 3 899999999988 66666654 467899999999999988
Q ss_pred EE--cCCeEEEEECCCCcEE-EeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 003236 786 IG--CYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 837 (837)
Q Consensus 786 gs--~dg~I~IwDl~s~~~~-~l~~h~~~V~sla~spdg~~LaSgs~DG~I~IWd 837 (837)
++ .|+.|+|||+.+++.+ .+.+|.+.|++++|+|||.+||||+.||+|+|||
T Consensus 338 ~sg~~d~~I~iwd~~~~~~v~~l~gH~~~V~~l~~spdg~~l~S~s~D~tvriWd 392 (420)
T 4gga_A 338 GHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWR 392 (420)
T ss_dssp EECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEEC
T ss_pred EEecCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEE
Confidence 76 5889999999999888 7889999999999999999999999999999997
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5.7e-33 Score=339.10 Aligned_cols=286 Identities=17% Similarity=0.308 Sum_probs=255.5
Q ss_pred eEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEE
Q 003236 546 TEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWD 625 (837)
Q Consensus 546 ~~~~~l~~H~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWD 625 (837)
...+.+.+|.+.|++++|+|++++||+|+.||.|+|||+.+++.+..+..|...|.+++|+|++++|++++.||.|+|||
T Consensus 4 ~~~~~~~~h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~ 83 (814)
T 3mkq_A 4 DIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFN 83 (814)
T ss_dssp CCEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEE
T ss_pred ccceeeecCCCceEEEEECCCCCEEEEEeCCCEEEEEECCCCceEEEEecCCCcEEEEEEeCCCCEEEEEeCCCeEEEEE
Confidence 34577889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCceeEEeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCC-eeeeEEe-cCCCeeEEEEec-CCCEEEEEEc
Q 003236 626 TENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNG-SCAGVFK-CQSGATQMRFQP-RLGRILAAAI 702 (837)
Q Consensus 626 l~~~~~~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~-~~i~~~~-~~~~i~sl~~sp-~g~~llags~ 702 (837)
+.+++ .+..+.+|...|.+++|+|++. ++++++.||.|++||+.++ .....+. +...+.+++|+| ++..+++++.
T Consensus 84 ~~~~~-~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~ 161 (814)
T 3mkq_A 84 YNTGE-KVVDFEAHPDYIRSIAVHPTKP-YVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCL 161 (814)
T ss_dssp TTTCC-EEEEEECCSSCEEEEEECSSSS-EEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETTEEEEEEEEET
T ss_pred CCCCc-EEEEEecCCCCEEEEEEeCCCC-EEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcCCCCEEEEEeC
Confidence 99876 4778889999999999999987 5668999999999999987 5555555 456799999999 7889999999
Q ss_pred CCeEEEEECCCCeEEEEEcCCC-CCEEEEEEcC--CCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeC
Q 003236 703 ENYISILDVETQVCRLKLQGHK-NQVHSVCWNT--SGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHP 778 (837)
Q Consensus 703 dg~I~iwDl~s~~~~~~l~~h~-~~V~sl~~sp--dg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fsp 778 (837)
|+.|++||++++.....+..+. ..|.+++|+| ++.+|++++ |+.|++||+.++ .++..+..|...|.+++|+|
T Consensus 162 dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~---~~~~~~~~~~~~v~~~~~~~ 238 (814)
T 3mkq_A 162 DRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTK---SCVATLEGHMSNVSFAVFHP 238 (814)
T ss_dssp TSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTT---EEEEEEECCSSCEEEEEECS
T ss_pred CCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCC---cEEEEEcCCCCCEEEEEEcC
Confidence 9999999999887776666554 8999999999 999999999 999999999887 77888888999999999999
Q ss_pred CCCEEEEEEcCCeEEEEECCCCcEE-EeccCCCCeeEEEEeCCCC--EEEEEECCCcEEEeC
Q 003236 779 TFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNG--MVASASHDKCVKIWK 837 (837)
Q Consensus 779 dg~~L~sgs~dg~I~IwDl~s~~~~-~l~~h~~~V~sla~spdg~--~LaSgs~DG~I~IWd 837 (837)
++.+|++++.|+.|++||+.+++.+ .+..|...|.+++|+|++. ++++++ |+.+.+|+
T Consensus 239 ~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~-~~~~~~~~ 299 (814)
T 3mkq_A 239 TLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGF-DNGFTVLS 299 (814)
T ss_dssp SSSEEEEEETTSCEEEEETTTCSEEEEECCSSSSEEEEEECTTCGGGEEEEEE-TTEEEEEE
T ss_pred CCCEEEEEeCCCeEEEEECCCCcEEEEeecCCCcEEEEEEccCCCceEEEEEe-CCCEEEEE
Confidence 9999999999999999999998877 6778889999999999987 455555 55566663
|
| >3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-32 Score=352.37 Aligned_cols=285 Identities=21% Similarity=0.356 Sum_probs=260.1
Q ss_pred EEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCC
Q 003236 549 QLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTEN 628 (837)
Q Consensus 549 ~~l~~H~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~ 628 (837)
..+.+|.+.|++++|+|||++||+|+.||+|+|||+.+++.+..+.+|...|.+++|+|++++|++++.|++|+|||+.+
T Consensus 609 ~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~ 688 (1249)
T 3sfz_A 609 LVVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSAT 688 (1249)
T ss_dssp EEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTT
T ss_pred EEEecccccEEEEEECCCCCEEEEEeCCCeEEEEECCCCCEEEEeccCCCCEEEEEEecCCCEEEEEeCCCeEEEEECCC
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCceeEEeeccccceEEEEEcCCC-CeEEEEEeCCCcEEEEECCCCeeeeEEec-CCCeeEEEEecCCCEEEEEEcCCeE
Q 003236 629 PDYSLRTFTGHSTTVMSLDFHPSK-EDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAIENYI 706 (837)
Q Consensus 629 ~~~~~~~~~~h~~~V~sl~fspdg-~~llasgs~Dg~I~vwDl~t~~~i~~~~~-~~~i~sl~~sp~g~~llags~dg~I 706 (837)
++ .+..+.+|...|.+++|+|++ ..++++++.|+.|++||+.+++++..+.. ...|.+++|+|++..+++++.||.|
T Consensus 689 ~~-~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~v 767 (1249)
T 3sfz_A 689 GK-LVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTL 767 (1249)
T ss_dssp CC-EEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECCCSSCEEEEEECSSTTEEEEEESSSEE
T ss_pred Cc-eEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheecCCCCCEEEEEEecCCCEEEEEECCCeE
Confidence 76 478889999999999999963 45788999999999999999998887764 5679999999999999999999999
Q ss_pred EEEECCCCeEEEEEcC-------------CCCCEEEEEEcCCCCEEEEEeCCeEEEEEcCCCCCceeEEEe-ecCCCceE
Q 003236 707 SILDVETQVCRLKLQG-------------HKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHEL-SCTGNKFH 772 (837)
Q Consensus 707 ~iwDl~s~~~~~~l~~-------------h~~~V~sl~~spdg~~LasgsDg~I~IwDl~s~~~~~~i~~~-~~~~~~I~ 772 (837)
++||++++.....+.. +...|.+++|+|++.++++++++.|.+||+.++ ..+..+ ..|...+.
T Consensus 768 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~---~~~~~~~~~~~~~v~ 844 (1249)
T 3sfz_A 768 RLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTS---GLLAEIHTGHHSTIQ 844 (1249)
T ss_dssp EEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTC---CEEEEEECSSSSCCC
T ss_pred EEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCC---CceeEEcCCCCCceE
Confidence 9999999887766542 233788999999999999999999999999987 444444 37889999
Q ss_pred EEEEeCCCCEEEEEEcCCeEEEEECCCCcEE-EeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 003236 773 SCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 837 (837)
Q Consensus 773 sv~fspdg~~L~sgs~dg~I~IwDl~s~~~~-~l~~h~~~V~sla~spdg~~LaSgs~DG~I~IWd 837 (837)
+++|+|++.++++++.++.|++||+.++..+ .+.+|...|++++|+|++.+|++++.||.|++||
T Consensus 845 ~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~s~s~dg~v~vw~ 910 (1249)
T 3sfz_A 845 YCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWE 910 (1249)
T ss_dssp EEEECSSTTEEEEECSSSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred EEEEcCCCCEEEEEeCCCeEEEEEcCCCceeeecCCCccceEEEEECCCCCEEEEEeCCCeEEEEE
Confidence 9999999999999999999999999999877 7789999999999999999999999999999996
|
| >3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-32 Score=329.42 Aligned_cols=274 Identities=16% Similarity=0.270 Sum_probs=234.7
Q ss_pred CCeEEcccCCCceEEeecCCCCCCCCccccccccCCCeeeeEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCC
Q 003236 506 DRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTE 585 (837)
Q Consensus 506 ~~~v~~Gs~D~~v~~w~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~H~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~ 585 (837)
..++++|+.|++|++|........ .......+.+|...|++++|+|++++|++|+.|++|+|||+.
T Consensus 395 ~~~l~s~s~D~~i~~W~~~~~~~~--------------~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg~v~vwd~~ 460 (694)
T 3dm0_A 395 ADIIVSASRDKSIILWKLTKDDKA--------------YGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGELRLWDLA 460 (694)
T ss_dssp CSEEEEEETTSEEEEEECCCSTTC--------------SCEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETT
T ss_pred CCEEEEEeCCCcEEEEEccCCCcc--------------cccccceecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEECC
Confidence 368999999999999976543211 112346688999999999999999999999999999999999
Q ss_pred CCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeEE---eeccccceEEEEEcCCCC-eEEEEEeC
Q 003236 586 SFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRT---FTGHSTTVMSLDFHPSKE-DLLCSCDN 661 (837)
Q Consensus 586 t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~~~~~~~~---~~~h~~~V~sl~fspdg~-~llasgs~ 661 (837)
++..+..+.+|...|.+++|+|++++|++|+.|++|+|||+..... ... ..+|...|.+++|+|++. .++++++.
T Consensus 461 ~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~-~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~ 539 (694)
T 3dm0_A 461 AGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECK-YTISEGGEGHRDWVSCVRFSPNTLQPTIVSASW 539 (694)
T ss_dssp TTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEE-EEECSSTTSCSSCEEEEEECSCSSSCEEEEEET
T ss_pred CCcceeEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCcc-eeeccCCCCCCCcEEEEEEeCCCCcceEEEEeC
Confidence 9999999999999999999999999999999999999999875322 222 246889999999999863 47889999
Q ss_pred CCcEEEEECCCCeeeeEEec-CCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEcCCCCEEE
Q 003236 662 NSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLA 740 (837)
Q Consensus 662 Dg~I~vwDl~t~~~i~~~~~-~~~i~sl~~sp~g~~llags~dg~I~iwDl~s~~~~~~l~~h~~~V~sl~~spdg~~La 740 (837)
|+.|++||++++++...+.. ...|.+++|+|++.+|++++.|+.|++||+++++++..+. +...|.+++|+|++.+|+
T Consensus 540 d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~sp~~~~l~ 618 (694)
T 3dm0_A 540 DKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLE-ANSVIHALCFSPNRYWLC 618 (694)
T ss_dssp TSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSBCEEEETTTTEEEECCB-CSSCEEEEEECSSSSEEE
T ss_pred CCeEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEec-CCCcEEEEEEcCCCcEEE
Confidence 99999999999998887764 5679999999999999999999999999999999888776 456899999999999999
Q ss_pred EEeCCeEEEEEcCCCCCceeEEEeecC-------------------CCceEEEEEeCCCCEEEEEEcCCeEEEEECC
Q 003236 741 SVSDELVRVWSIGSGSKGECIHELSCT-------------------GNKFHSCVFHPTFPSLLVIGCYETLELWNMT 798 (837)
Q Consensus 741 sgsDg~I~IwDl~s~~~~~~i~~~~~~-------------------~~~I~sv~fspdg~~L~sgs~dg~I~IwDl~ 798 (837)
++.++.|+|||++++ ..+..+..+ ...+++++|+|++.+|++++.||.|+|||+.
T Consensus 619 ~~~~~~i~iwd~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~spdg~~l~sgs~Dg~i~iW~i~ 692 (694)
T 3dm0_A 619 AATEHGIKIWDLESK---SIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADGSTLFSGYTDGVIRVWGIG 692 (694)
T ss_dssp EEETTEEEEEETTTT---EEEEEECCCCC----------------CCCCEEEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred EEcCCCEEEEECCCC---CChhhhccccccccccccccccccCCceeEEeeeEEEcCCCCEEEEEcCCCeEEEEecc
Confidence 988989999999987 444444321 1237889999999999999999999999985
|
| >4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.6e-32 Score=291.49 Aligned_cols=270 Identities=21% Similarity=0.391 Sum_probs=229.3
Q ss_pred eEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEe--ccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeEE
Q 003236 558 VESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTL--EEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRT 635 (837)
Q Consensus 558 V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l--~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~~~~~~~~ 635 (837)
+.+|+||+++ +||+|. |++|+|||+.+++++..+ .+|...|++++|+|++++|++|+.||+|+|||+.+++ .+..
T Consensus 28 ~~~l~WS~~~-~lAvg~-D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~-~~~~ 104 (318)
T 4ggc_A 28 LNLVDWSSGN-VLAVAL-DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQK-RLRN 104 (318)
T ss_dssp CBCEEECTTS-EEEEEE-TTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTE-EEEE
T ss_pred ceEEEECCCC-EEEEEe-CCEEEEEECCCCCEEEEEEecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCce-eEEE
Confidence 5789999986 777765 899999999999988766 4678899999999999999999999999999999866 4788
Q ss_pred eeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCee-eeEEe-cCCCeeEEEEecCCCEEEEEEcCCeEEEEECCC
Q 003236 636 FTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSC-AGVFK-CQSGATQMRFQPRLGRILAAAIENYISILDVET 713 (837)
Q Consensus 636 ~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~-i~~~~-~~~~i~sl~~sp~g~~llags~dg~I~iwDl~s 713 (837)
+.+|...+.++.+.+ .++++++.++.+++|+...... +..+. +...+..+.+.+++.++++++.|+.|++||+++
T Consensus 105 ~~~h~~~~~~~~~~~---~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~ 181 (318)
T 4ggc_A 105 MTSHSARVGSLSWNS---YILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAP 181 (318)
T ss_dssp EECCSSCEEEEEEET---TEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSC
T ss_pred ecCccceEEEeecCC---CEEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcCCCCEEEEEecCcceeEEECCC
Confidence 899999998888764 3788999999999999987543 33333 466799999999999999999999999999987
Q ss_pred Ce----EEEEEcCCCCCEEEEEEcCCCCEE-E--EEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEE
Q 003236 714 QV----CRLKLQGHKNQVHSVCWNTSGEYL-A--SVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLV 785 (837)
Q Consensus 714 ~~----~~~~l~~h~~~V~sl~~spdg~~L-a--sgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fspdg~~L~s 785 (837)
++ .......|...|.++++++++..+ . +++ ++.|++||.... ... ....+...+..+.|++++..+++
T Consensus 182 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~---~~~-~~~~~~~~v~~~~~~~~~~~~~~ 257 (318)
T 4ggc_A 182 GEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSG---ACL-SAVDAHSQVCSILWSPHYKELIS 257 (318)
T ss_dssp BTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTC---CEE-EEEECSSCEEEEEEETTTTEEEE
T ss_pred CcccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEecccc---ccc-ccccceeeeeeeeecccccceEE
Confidence 64 345566788899999999976533 3 333 789999999876 333 33446778999999999999888
Q ss_pred EE--cCCeEEEEECCCCcEE-EeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 003236 786 IG--CYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 837 (837)
Q Consensus 786 gs--~dg~I~IwDl~s~~~~-~l~~h~~~V~sla~spdg~~LaSgs~DG~I~IWd 837 (837)
++ .|+.|+|||+.+++.+ .+.+|.+.|++++|+|++++||||+.||+|+|||
T Consensus 258 ~sg~~d~~i~iwd~~~~~~~~~l~gH~~~V~~l~~spdg~~l~S~s~D~~v~iWd 312 (318)
T 4ggc_A 258 GHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWR 312 (318)
T ss_dssp EECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEEC
T ss_pred EEEcCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEE
Confidence 76 6889999999999888 7889999999999999999999999999999997
|
| >1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X | Back alignment and structure |
|---|
Probab=100.00 E-value=8.1e-33 Score=307.76 Aligned_cols=276 Identities=17% Similarity=0.145 Sum_probs=241.5
Q ss_pred CeEEcccCCCceEEeecCCCCCCCCccccccccCCCeeeeEEEEecCCCCCeEEEEEcCC----C---CEEEEEECCCcE
Q 003236 507 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPD----G---KLLATGGHDKKA 579 (837)
Q Consensus 507 ~~v~~Gs~D~~v~~w~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~H~~~V~sl~fSpd----g---~~Lasgs~Dg~I 579 (837)
.++++|+.|+.|++|........ ..+..+..+.+|...|++++|+|+ + ++|++++.|+.|
T Consensus 27 ~~l~s~~~dg~i~iw~~~~~~~~-------------~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l~s~~~dg~i 93 (397)
T 1sq9_A 27 SFTVSCSGDGYLKVWDNKLLDNE-------------NPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFSGDL 93 (397)
T ss_dssp SEEEEEETTSEEEEEESBCCTTC-------------CGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEETTSCE
T ss_pred CeEEEEcCCCEEEEEECCCcccc-------------cCCCcceEEecCCCcEEEEEEecccccCCccccEEEEEcCCCCE
Confidence 68899999999999976544211 112345667799999999999999 9 999999999999
Q ss_pred EEEeCCCCeE-----EEEeccC-----CCCeEEEEEc----CCCCE-EEEEeCCCeEEEEEcCC------CCceeE----
Q 003236 580 VLWCTESFTV-----KSTLEEH-----TQWITDVRFS----PSLSR-LATSSADRTVRVWDTEN------PDYSLR---- 634 (837)
Q Consensus 580 ~VWd~~t~~~-----~~~l~~h-----~~~I~~l~fs----pdg~~-Latgs~Dg~I~IWDl~~------~~~~~~---- 634 (837)
++||+.+++. +..+..| ...|.+++|+ |++.+ |++++.||.|++||+.+ ... +.
T Consensus 94 ~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-~~~~~~ 172 (397)
T 1sq9_A 94 LFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLT-LNWSPT 172 (397)
T ss_dssp EEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTT-TCCCCE
T ss_pred EEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCccccccccce-eeccCc
Confidence 9999988776 7888888 5999999999 99999 99999999999999987 443 33
Q ss_pred -Ee-------eccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeeEEec-------CCCeeEEEEecCCCEEEE
Q 003236 635 -TF-------TGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-------QSGATQMRFQPRLGRILA 699 (837)
Q Consensus 635 -~~-------~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~-------~~~i~sl~~sp~g~~lla 699 (837)
.+ ..|...|.+++|+|++ ++++++.|+.|++||+++++.+..+.. ...+.+++|+|++.+|++
T Consensus 173 ~~~~~~~~~~~~~~~~i~~~~~~~~~--~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~ 250 (397)
T 1sq9_A 173 LELQGTVESPMTPSQFATSVDISERG--LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAI 250 (397)
T ss_dssp EEEEEEECCSSSSCCCCCEEEECTTS--EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEE
T ss_pred ceeeeeeccccCCCCCceEEEECCCc--eEEEEeCCCcEEEEECCCCceeEEEeccccccccCCccceEEECCCCCEEEE
Confidence 45 4488999999999997 777999999999999999999998886 778999999999999999
Q ss_pred EEcC---CeEEEEECCCCeEEEEEcC-------------CCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEE
Q 003236 700 AAIE---NYISILDVETQVCRLKLQG-------------HKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIH 762 (837)
Q Consensus 700 gs~d---g~I~iwDl~s~~~~~~l~~-------------h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~ 762 (837)
++.| +.|++||+++++.+..+.. |...|.+++|+|++.+|++++ |+.|+|||++++ .++.
T Consensus 251 ~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~---~~~~ 327 (397)
T 1sq9_A 251 AHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTK---ERIT 327 (397)
T ss_dssp EEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTT---EEEE
T ss_pred EecCCCCceEEEEECCCCcccceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCCC---ceeE
Confidence 9999 9999999999999999998 999999999999999999999 999999999887 7777
Q ss_pred Eee------cC---------------CCceEEEEEeCCC----------CEEEEEEcCCeEEEEECCCCc
Q 003236 763 ELS------CT---------------GNKFHSCVFHPTF----------PSLLVIGCYETLELWNMTENK 801 (837)
Q Consensus 763 ~~~------~~---------------~~~I~sv~fspdg----------~~L~sgs~dg~I~IwDl~s~~ 801 (837)
.+. .| ...|.+++|+|++ .+|++++.|+.|++||+.+++
T Consensus 328 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~~~~g~ 397 (397)
T 1sq9_A 328 TLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFREAGGK 397 (397)
T ss_dssp EEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEEEEC--
T ss_pred EEecccCcccchhhhhccccccccccCCceeEEEeccccccccccccccceEEEecCCCcEEEEEcCCCC
Confidence 787 77 8999999999998 799999999999999998764
|
| >1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-32 Score=311.31 Aligned_cols=271 Identities=22% Similarity=0.402 Sum_probs=241.7
Q ss_pred EEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcC
Q 003236 548 FQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTE 627 (837)
Q Consensus 548 ~~~l~~H~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~ 627 (837)
+....+|...|+|+.| ++++|++|+.||.|++||+.+++.+..+.+|...|.+++| ++.+|++|+.||+|++||+.
T Consensus 126 ~~~~~~~~~~v~~~~~--d~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~ 201 (435)
T 1p22_A 126 IHCRSETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVN 201 (435)
T ss_dssp EECCCSSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESS
T ss_pred EecccCCCCcEEEEEE--CCCEEEEEeCCCeEEEEeCCCCeEEEEEcCCCCcEEEEEE--CCCEEEEEcCCCeEEEEECC
Confidence 4445578888999887 7899999999999999999999999999999999999999 78899999999999999999
Q ss_pred CCCceeEEeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeee---EEe-cCCCeeEEEEecCCCEEEEEEcC
Q 003236 628 NPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAG---VFK-CQSGATQMRFQPRLGRILAAAIE 703 (837)
Q Consensus 628 ~~~~~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~---~~~-~~~~i~sl~~sp~g~~llags~d 703 (837)
+++ .+..+.+|...|.+++|+++ ++++|+.||.|++||+.++.... .+. +...|.++.| +++++++++.|
T Consensus 202 ~~~-~~~~~~~h~~~v~~l~~~~~---~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~d 275 (435)
T 1p22_A 202 TGE-MLNTLIHHCEAVLHLRFNNG---MMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF--DDKYIVSASGD 275 (435)
T ss_dssp SCC-EEEEECCCCSCEEEEECCTT---EEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE--ETTEEEEEETT
T ss_pred CCc-EEEEEcCCCCcEEEEEEcCC---EEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEe--CCCEEEEEeCC
Confidence 876 47888899999999999743 78899999999999999877652 232 3567888888 67899999999
Q ss_pred CeEEEEECCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCE
Q 003236 704 NYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPS 782 (837)
Q Consensus 704 g~I~iwDl~s~~~~~~l~~h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fspdg~~ 782 (837)
+.|++||+++++.+..+.+|...|.++.|+ +.+|++++ |+.|++||++++ .++..+..|...|.+++| ++.+
T Consensus 276 g~i~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~g~~dg~i~iwd~~~~---~~~~~~~~h~~~v~~~~~--~~~~ 348 (435)
T 1p22_A 276 RTIKVWNTSTCEFVRTLNGHKRGIACLQYR--DRLVVSGSSDNTIRLWDIECG---ACLRVLEGHEELVRCIRF--DNKR 348 (435)
T ss_dssp SEEEEEETTTCCEEEEEECCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTC---CEEEEECCCSSCEEEEEC--CSSE
T ss_pred CeEEEEECCcCcEEEEEcCCCCcEEEEEeC--CCEEEEEeCCCeEEEEECCCC---CEEEEEeCCcCcEEEEEe--cCCE
Confidence 999999999999999999999999999994 67888888 999999999987 788889999999999999 7789
Q ss_pred EEEEEcCCeEEEEECCCCc---------EE-EeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 003236 783 LLVIGCYETLELWNMTENK---------TL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 837 (837)
Q Consensus 783 L~sgs~dg~I~IwDl~s~~---------~~-~l~~h~~~V~sla~spdg~~LaSgs~DG~I~IWd 837 (837)
|++++.||.|++||+.++. .+ .+.+|.+.|.+++| ++.+|++|+.||.|+|||
T Consensus 349 l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~Dg~i~iwd 411 (435)
T 1p22_A 349 IVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQF--DEFQIVSSSHDDTILIWD 411 (435)
T ss_dssp EEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEE--CSSCEEECCSSSEEEEEC
T ss_pred EEEEeCCCcEEEEECCCCCCccccccchheeeccCCCCCeEEEEe--CCCEEEEEeCCCEEEEEE
Confidence 9999999999999986654 44 77899999999999 688999999999999997
|
| >3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-31 Score=290.32 Aligned_cols=272 Identities=14% Similarity=0.163 Sum_probs=241.3
Q ss_pred CCCeEEcccCCCceEEeecCCCCCCCCccccccccCCCeeeeEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEeC
Q 003236 505 MDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCT 584 (837)
Q Consensus 505 ~~~~v~~Gs~D~~v~~w~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~H~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~ 584 (837)
...++++|+.|+.|++|..... ..+..+.+|.+.|++++|+|++++|++++.||.|++||+
T Consensus 43 ~~~~l~~~~~dg~i~vwd~~~~-------------------~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~ 103 (369)
T 3zwl_B 43 EGDLLFSCSKDSSASVWYSLNG-------------------ERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWDV 103 (369)
T ss_dssp TSCEEEEEESSSCEEEEETTTC-------------------CEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEET
T ss_pred CCCEEEEEeCCCEEEEEeCCCc-------------------hhhhhhhhcCCcEEEEEEcCCCCEEEEEeCCCeEEEEEC
Confidence 3468899999999999965432 245677899999999999999999999999999999999
Q ss_pred CCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCC-----CeEEEEEcCCCCc----------eeEEeecccc--ceEEEE
Q 003236 585 ESFTVKSTLEEHTQWITDVRFSPSLSRLATSSAD-----RTVRVWDTENPDY----------SLRTFTGHST--TVMSLD 647 (837)
Q Consensus 585 ~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~D-----g~I~IWDl~~~~~----------~~~~~~~h~~--~V~sl~ 647 (837)
.+++.+..+. |...|.+++|+|++.+|++++.+ +.|++||+..... .+..+..|.. .+.+++
T Consensus 104 ~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (369)
T 3zwl_B 104 SNGQCVATWK-SPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAG 182 (369)
T ss_dssp TTCCEEEEEE-CSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEEE
T ss_pred CCCcEEEEee-cCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccceeEEE
Confidence 9999998887 88999999999999999999999 9999999986542 2345556666 899999
Q ss_pred EcCCCCeEEEEEeCCCcEEEEECCC-CeeeeEEec-CCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEcCCCC
Q 003236 648 FHPSKEDLLCSCDNNSEIRYWSINN-GSCAGVFKC-QSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKN 725 (837)
Q Consensus 648 fspdg~~llasgs~Dg~I~vwDl~t-~~~i~~~~~-~~~i~sl~~sp~g~~llags~dg~I~iwDl~s~~~~~~l~~h~~ 725 (837)
|+|++. ++++++.||.|++||+++ ...+..+.. ...|.+++|+|++.+|++++.|+.|++||+++++.+..+. +..
T Consensus 183 ~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~-~~~ 260 (369)
T 3zwl_B 183 WSTKGK-YIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQVLKKYE-TDC 260 (369)
T ss_dssp ECGGGC-EEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE-CSS
T ss_pred EcCCCC-EEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEEEECCCCCEEEEecCCceEEEEECCCCceeeeec-CCC
Confidence 999977 566888999999999998 677777764 6779999999999999999999999999999999888887 788
Q ss_pred CEEEEEEcCCCCEEEEEe-CC--------------eEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCC
Q 003236 726 QVHSVCWNTSGEYLASVS-DE--------------LVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYE 790 (837)
Q Consensus 726 ~V~sl~~spdg~~Lasgs-Dg--------------~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fspdg~~L~sgs~dg 790 (837)
.+.+++|+|++.++++++ ++ .|++||+.++ ..+..+..|...|.+++|+|++.+|++++.|+
T Consensus 261 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~---~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg 337 (369)
T 3zwl_B 261 PLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFE---EEIGRVQGHFGPLNTVAISPQGTSYASGGEDG 337 (369)
T ss_dssp CEEEEEECSSSSEEEEEECCC-------------CEEEEEETTTC---CEEEEEECCSSCEEEEEECTTSSEEEEEETTS
T ss_pred CceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCC---cchhheecccCcEEEEEECCCCCEEEEEcCCC
Confidence 999999999999999988 66 8999999888 67888889999999999999999999999999
Q ss_pred eEEEEECCCCc
Q 003236 791 TLELWNMTENK 801 (837)
Q Consensus 791 ~I~IwDl~s~~ 801 (837)
.|++|++..+.
T Consensus 338 ~v~iw~~~~~~ 348 (369)
T 3zwl_B 338 FIRLHHFEKSY 348 (369)
T ss_dssp EEEEEEECHHH
T ss_pred eEEEEECcccc
Confidence 99999997654
|
| >3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-32 Score=299.96 Aligned_cols=277 Identities=15% Similarity=0.271 Sum_probs=232.0
Q ss_pred CeEEcccC---CCceEEeecCCCCCCCCccccccccCCCeeeeEEEEecCCCCCeEEEEEcCC---CCEEEEEECCCcEE
Q 003236 507 RFVDDGSL---DDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPD---GKLLATGGHDKKAV 580 (837)
Q Consensus 507 ~~v~~Gs~---D~~v~~w~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~H~~~V~sl~fSpd---g~~Lasgs~Dg~I~ 580 (837)
.++++|+. |+.|++|...... .. .....+|...|++++|+|+ +.+|++|+.||.|+
T Consensus 32 ~l~~~~s~~~~d~~v~iw~~~~~~-----------------~~-~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~ 93 (357)
T 3i2n_A 32 KFVTMGNFARGTGVIQLYEIQHGD-----------------LK-LLREIEKAKPIKCGTFGATSLQQRYLATGDFGGNLH 93 (357)
T ss_dssp EEEEEEC--CCCEEEEEEEECSSS-----------------EE-EEEEEEESSCEEEEECTTCCTTTCCEEEEETTSCEE
T ss_pred eEEEecCccCCCcEEEEEeCCCCc-----------------cc-ceeeecccCcEEEEEEcCCCCCCceEEEecCCCeEE
Confidence 57788887 8999999664321 11 1122378999999999998 69999999999999
Q ss_pred EEeCCCCe-EEEEeccCCCCeEEEEE------cCCCCEEEEEeCCCeEEEEEcCCCCceeEEeecccc----ceEEEE--
Q 003236 581 LWCTESFT-VKSTLEEHTQWITDVRF------SPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHST----TVMSLD-- 647 (837)
Q Consensus 581 VWd~~t~~-~~~~l~~h~~~I~~l~f------spdg~~Latgs~Dg~I~IWDl~~~~~~~~~~~~h~~----~V~sl~-- 647 (837)
+||+.+++ .+..+.+|...|.+++| +|++++|++++.||.|++||+.++...+..+..|.. .|.+++
T Consensus 94 iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 173 (357)
T 3i2n_A 94 IWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRDCWTVAFG 173 (357)
T ss_dssp EECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSEEECCCTTSCCCCEEEEEEE
T ss_pred EEeCCCCCccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCcceeccccCCCCCCceEEEEEE
Confidence 99999888 88899999999999955 678999999999999999999987755677766554 899998
Q ss_pred --EcCCCCeEEEEEeCCCcEEEEECCCCeeeeEEecCCCeeEEEEec---CCCEEEEEEcCCeEEEEECCCCeEEEE---
Q 003236 648 --FHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQP---RLGRILAAAIENYISILDVETQVCRLK--- 719 (837)
Q Consensus 648 --fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~~~~i~sl~~sp---~g~~llags~dg~I~iwDl~s~~~~~~--- 719 (837)
|+|++. ++++++.|+.|++||+++++......+...+.+++|+| ++..+++++.|+.|++||++++..+..
T Consensus 174 ~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~ 252 (357)
T 3i2n_A 174 NAYNQEER-VVCAGYDNGDIKLFDLRNMALRWETNIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPTKGFAS 252 (357)
T ss_dssp CCCC-CCC-EEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEEETTTEEEE
T ss_pred eccCCCCC-EEEEEccCCeEEEEECccCceeeecCCCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCCcccceee
Confidence 677765 66788999999999999999988888889999999999 899999999999999999987654433
Q ss_pred --EcCCCCCEEEEEEcCCCC-EEEEEe-CCeEEEEEcCCCCCc----------------eeEEEeecCCCceEEEEEeCC
Q 003236 720 --LQGHKNQVHSVCWNTSGE-YLASVS-DELVRVWSIGSGSKG----------------ECIHELSCTGNKFHSCVFHPT 779 (837)
Q Consensus 720 --l~~h~~~V~sl~~spdg~-~Lasgs-Dg~I~IwDl~s~~~~----------------~~i~~~~~~~~~I~sv~fspd 779 (837)
+.+|...|++++|+|++. +|++++ |+.|++||++..... ..+..+..|...|.+++|+|+
T Consensus 253 ~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~ 332 (357)
T 3i2n_A 253 VSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPISSLDWSPD 332 (357)
T ss_dssp EEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECCSSCEEEEEECSS
T ss_pred eccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCccccccccceeeccccCCCCeeEEEEcCC
Confidence 348999999999999998 788888 999999999875432 467788899999999999999
Q ss_pred CCEEE-EEEcCCeEEEEECCCCcE
Q 003236 780 FPSLL-VIGCYETLELWNMTENKT 802 (837)
Q Consensus 780 g~~L~-sgs~dg~I~IwDl~s~~~ 802 (837)
+.+|+ +++.|+.|+|||+.+.+.
T Consensus 333 ~~~l~~s~~~d~~i~iw~~~~~~~ 356 (357)
T 3i2n_A 333 KRGLCVCSSFDQTVRVLIVTKLNK 356 (357)
T ss_dssp STTEEEEEETTSEEEEEEECC---
T ss_pred CCeEEEEecCCCcEEEEECCCccc
Confidence 99998 799999999999987654
|
| >1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C | Back alignment and structure |
|---|
Probab=100.00 E-value=6e-32 Score=297.28 Aligned_cols=279 Identities=17% Similarity=0.226 Sum_probs=235.7
Q ss_pred CCCeEEcccCCCceEEeecCCCCCCCCccccccccCCCeeeeEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEeC
Q 003236 505 MDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCT 584 (837)
Q Consensus 505 ~~~~v~~Gs~D~~v~~w~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~H~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~ 584 (837)
...++++|+.|+.|++|..... .+..+..+.+|...|++++|+|++++|++++.|+.|++||+
T Consensus 19 ~~~~l~~~~~d~~v~i~~~~~~-----------------~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~ 81 (372)
T 1k8k_C 19 DRTQIAICPNNHEVHIYEKSGN-----------------KWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTL 81 (372)
T ss_dssp TSSEEEEECSSSEEEEEEEETT-----------------EEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEE
T ss_pred CCCEEEEEeCCCEEEEEeCCCC-----------------cEEeeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEEC
Confidence 3478899999999999955322 23467778899999999999999999999999999999999
Q ss_pred CCCeEEEE--eccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCc---eeEEeeccccceEEEEEcCCCCeEEEEE
Q 003236 585 ESFTVKST--LEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDY---SLRTFTGHSTTVMSLDFHPSKEDLLCSC 659 (837)
Q Consensus 585 ~t~~~~~~--l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~~~~---~~~~~~~h~~~V~sl~fspdg~~llasg 659 (837)
.+++.... +..|...|.+++|+|++++|++++.|+.|++||+..... .......|...|.+++|+|++. +++++
T Consensus 82 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~ 160 (372)
T 1k8k_C 82 KGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSV-LLAAG 160 (372)
T ss_dssp ETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSS-EEEEE
T ss_pred CCCeeeeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCC-EEEEE
Confidence 88875544 467999999999999999999999999999999998663 2344467899999999999876 66688
Q ss_pred eCCCcEEEEECC------------------CCeeeeEEe-cCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEE
Q 003236 660 DNNSEIRYWSIN------------------NGSCAGVFK-CQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKL 720 (837)
Q Consensus 660 s~Dg~I~vwDl~------------------t~~~i~~~~-~~~~i~sl~~sp~g~~llags~dg~I~iwDl~s~~~~~~l 720 (837)
+.|+.|++||++ .++++..+. +...+.+++|+|++.+|++++.|+.|++||+++++++..+
T Consensus 161 ~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~ 240 (372)
T 1k8k_C 161 SCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATL 240 (372)
T ss_dssp ETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEE
T ss_pred cCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEeCCCEEEEEECCCCceeEEE
Confidence 999999999954 567777774 4567999999999999999999999999999999999999
Q ss_pred cCCCCCEEEEEEcCCCCEEEEEeCCeEEEEEcCC--CC-----------------------------CceeE------EE
Q 003236 721 QGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGS--GS-----------------------------KGECI------HE 763 (837)
Q Consensus 721 ~~h~~~V~sl~~spdg~~LasgsDg~I~IwDl~s--~~-----------------------------~~~~i------~~ 763 (837)
..|...|.+++|+|++.+|+++.|+.|++|++.+ +. ..... ..
T Consensus 241 ~~~~~~v~~~~~~~~~~~l~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (372)
T 1k8k_C 241 ASETLPLLAVTFITESSLVAAGHDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAG 320 (372)
T ss_dssp ECSSCCEEEEEEEETTEEEEEETTSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCCC---------CC
T ss_pred ccCCCCeEEEEEecCCCEEEEEeCCeEEEEEccCcCceEEEeeccCccccchhhhcchhhhhhhcccccccccCcccccc
Confidence 9999999999999999999988899999999987 31 00110 22
Q ss_pred e-ecCCCceEEEEEe-CCC---CEEEEEEcCCeEEEEECCCCc
Q 003236 764 L-SCTGNKFHSCVFH-PTF---PSLLVIGCYETLELWNMTENK 801 (837)
Q Consensus 764 ~-~~~~~~I~sv~fs-pdg---~~L~sgs~dg~I~IwDl~s~~ 801 (837)
+ .+|...|.+++|. +++ .+|++++.|+.|++||+.+++
T Consensus 321 ~~~~h~~~v~~~~~~~~~g~~~~~l~s~~~Dg~i~~W~~~~~~ 363 (372)
T 1k8k_C 321 LDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRSLE 363 (372)
T ss_dssp CSSSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEHHHHH
T ss_pred ccccccCCcceeEEecCCCcceeeEEEecCCCceEEEEecChh
Confidence 2 3788999999866 666 899999999999999987644
|
| >2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-32 Score=339.17 Aligned_cols=329 Identities=11% Similarity=0.041 Sum_probs=244.9
Q ss_pred CCccccCCCeEEcccCCCceEEeecCCCCCCCCccccccccCCCeeeeEEEEecCCCCCeEEEEEcCC-CCEEEEEECCC
Q 003236 499 PNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPD-GKLLATGGHDK 577 (837)
Q Consensus 499 ~~~l~~~~~~v~~Gs~D~~v~~w~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~H~~~V~sl~fSpd-g~~Lasgs~Dg 577 (837)
...+.+...++++|+.|+.|++|...........+...+.. ...+.+|.+.|++++|+|+ +.+|++|+.|+
T Consensus 103 ~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~--------~~~~~~h~~~V~sl~~sp~~~~~l~~g~~dg 174 (902)
T 2oaj_A 103 SIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKS--------SFFPAARLSPIVSIQWNPRDIGTVLISYEYV 174 (902)
T ss_dssp EEECCTTCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHH--------HTCSSSCCCCCCEEEEETTEEEEEEEECSSC
T ss_pred EEEECCCCCEEEEEcCCCcEEEEECCCCccccceecccccc--------ccccccCCCCeEEEEEccCCCCEEEEEeCCC
Confidence 34455667899999999999999765431000000000000 0234789999999999996 57899999999
Q ss_pred cEEEEeCCCCeEEEEeccC------------------CCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeE-Ee--
Q 003236 578 KAVLWCTESFTVKSTLEEH------------------TQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLR-TF-- 636 (837)
Q Consensus 578 ~I~VWd~~t~~~~~~l~~h------------------~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~~~~~~~-~~-- 636 (837)
.| |||+.+++.+..+..| ...|++++|+|++.+|++++.||+|++||+.+++.... .+
T Consensus 175 ~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~i~lWd~~~g~~~~~r~l~~ 253 (902)
T 2oaj_A 175 TL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNSLVFWDANSGHMIMARTVFE 253 (902)
T ss_dssp EE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTCCEEEEETTTCCEEEEECSSC
T ss_pred cE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEEeecc
Confidence 99 9999999999888765 57899999999999999999999999999988654221 12
Q ss_pred -ec-------------cccceEEEEEc----CCCCeEEEEEeCC-----CcEEEEE------------------------
Q 003236 637 -TG-------------HSTTVMSLDFH----PSKEDLLCSCDNN-----SEIRYWS------------------------ 669 (837)
Q Consensus 637 -~~-------------h~~~V~sl~fs----pdg~~llasgs~D-----g~I~vwD------------------------ 669 (837)
.. |...|.+++|+ |++..++++|+.| ..|++|+
T Consensus 254 ~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~~~~~~~~~~~s~~~~~~~~~~~~~ 333 (902)
T 2oaj_A 254 TEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMIDLGYTPRYSITSYEGMKNYYANPKQ 333 (902)
T ss_dssp SCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCCEEEEEEEECCCGGGCCHHHHHHHHHSCSE
T ss_pred cccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCceEEEEecCCCCCccccchhhhhhhhcCccc
Confidence 11 34578999995 4433566666433 1444444
Q ss_pred -----------------------------------------------CCCCeeeeE-------Ee-cCCCee--------
Q 003236 670 -----------------------------------------------INNGSCAGV-------FK-CQSGAT-------- 686 (837)
Q Consensus 670 -----------------------------------------------l~t~~~i~~-------~~-~~~~i~-------- 686 (837)
+.++..... +. ++..|+
T Consensus 334 ~~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l~~~~~~~g~~~~~~~~~~~~l~~~~~~v~~~~~s~~~ 413 (902)
T 2oaj_A 334 MKIFPLPTNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGEIETMLYPSGIFTDKASLFPQNLSWLRPLATTSMAASVP 413 (902)
T ss_dssp EEEECCSSSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTSCEEEEETTTCCEECCGGGSCGGGTTBTTBEEEEEEEEEE
T ss_pred eEEEecCCCCceEEEEECCCCCCCcCCCCCceeEEEEcCCCcEEEEECCCCCcccccccCCCcccccCCCeeEEEEEEcC
Confidence 333321110 00 011223
Q ss_pred --------------------------EEEEecCCCEEEEEEcCCeEEEEECCCCeE----EEE--Ec-----CCCCCEEE
Q 003236 687 --------------------------QMRFQPRLGRILAAAIENYISILDVETQVC----RLK--LQ-----GHKNQVHS 729 (837)
Q Consensus 687 --------------------------sl~~sp~g~~llags~dg~I~iwDl~s~~~----~~~--l~-----~h~~~V~s 729 (837)
+++|+|+++.|++++.|++|++||+.++.. ... +. +|...|.+
T Consensus 414 ~~~w~~~~~~~~~~~~~l~G~~~~v~sv~~spdg~~laSgs~DgtVrlWd~~~g~~~~~~~~~~~l~~~~~~~h~~~V~s 493 (902)
T 2oaj_A 414 NKLWLGALSAAQNKDYLLKGGVRTKRQKLPAEYGTAFITGHSNGSVRIYDASHGDIQDNASFEVNLSRTLNKAKELAVDK 493 (902)
T ss_dssp HHHHHHHHHTTBCCCCSCCCSBCCCCCCCCCSEEEEEEEEETTSEEEEEESSCCTTTTTBCEEEEHHHHTTCSSSCCEEE
T ss_pred HHHHHHHHhcccCCCCcccCCcCCCCcccccccCcEEEEecCCCcEEEEECCCccccCCceEEeechhhcCCCCCCceeE
Confidence 344568888999999999999999987632 111 12 78999999
Q ss_pred EEEcCCCCEEEEEe-CCeEEEEEcCCCCC------------------------------------------ceeEEEeec
Q 003236 730 VCWNTSGEYLASVS-DELVRVWSIGSGSK------------------------------------------GECIHELSC 766 (837)
Q Consensus 730 l~~spdg~~Lasgs-Dg~I~IwDl~s~~~------------------------------------------~~~i~~~~~ 766 (837)
|+|+||+++||+++ |++|+|||+.++.. ..++..+..
T Consensus 494 vafspdg~~LAsgs~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~ 573 (902)
T 2oaj_A 494 ISFAAETLELAVSIETGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVHA 573 (902)
T ss_dssp EEEETTTTEEEEEETTSCEEEEEEEECCC---------------CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEECC
T ss_pred EEecCCCCeEEEEecCcEEEEEEecCccccCccccCCCcccceeeeeccccCCccccccccccCCCCCCCccceeEEEEc
Confidence 99999999999999 99999999986521 134677888
Q ss_pred CCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEEE------e-ccCCCCeeEEEEe-----CCC---CEEEEEECCC
Q 003236 767 TGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLT------L-SAHDKLVSSLAAS-----TVN---GMVASASHDK 831 (837)
Q Consensus 767 ~~~~I~sv~fspdg~~L~sgs~dg~I~IwDl~s~~~~~------l-~~h~~~V~sla~s-----pdg---~~LaSgs~DG 831 (837)
|...|++++|+|+| +|++|+.|++|+|||+.+..++. + .+|...|++|+|+ ||| .+|++|+.||
T Consensus 574 h~~~V~svafSpdG-~lAsgs~D~tv~lwd~~~~~~~~~~~~~~~~~gh~~~V~sv~Fs~~~~~~Dg~~~~~l~sgs~D~ 652 (902)
T 2oaj_A 574 NKGKTSAINNSNIG-FVGIAYAAGSLMLIDRRGPAIIYMENIREISGAQSACVTCIEFVIMEYGDDGYSSILMVCGTDMG 652 (902)
T ss_dssp CSCSEEEEEECBTS-EEEEEETTSEEEEEETTTTEEEEEEEGGGTCSSCCCCEEEEEEEEEECTTSSSEEEEEEEEETTS
T ss_pred CCCcEEEEEecCCc-EEEEEeCCCcEEEEECCCCeEEEEeehhHhccccccceEEEEEEEEecCCCCCcceEEEEEecCC
Confidence 99999999999999 99999999999999998887652 2 2789999999999 885 8999999999
Q ss_pred cEEEeC
Q 003236 832 CVKIWK 837 (837)
Q Consensus 832 ~I~IWd 837 (837)
+|++||
T Consensus 653 tv~~wd 658 (902)
T 2oaj_A 653 EVITYK 658 (902)
T ss_dssp EEEEEE
T ss_pred cEEEEE
Confidence 999996
|
| >2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-31 Score=303.12 Aligned_cols=272 Identities=25% Similarity=0.470 Sum_probs=242.4
Q ss_pred EEEEecCCCCCe-EEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEE
Q 003236 547 EFQLIPASTSKV-ESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWD 625 (837)
Q Consensus 547 ~~~~l~~H~~~V-~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWD 625 (837)
....+.+|.+.| +| ++++|++|++|+.||+|++||+.+++.+..+.+|...|.+++|+ +.+|++++.||+|++||
T Consensus 110 ~~~~l~~h~~~v~~~--~~~~g~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~~~dg~i~vwd 185 (445)
T 2ovr_B 110 SPKVLKGHDDHVITC--LQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMR--DNIIISGSTDRTLKVWN 185 (445)
T ss_dssp CCEEEECSTTSCEEE--EEEETTEEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEE--TTEEEEEETTSCEEEEE
T ss_pred eeEEecccCCCcEEE--EEEcCCEEEEEECCCcEEEEECCCCcEEEEEcCCCCCEEEEEec--CCEEEEEeCCCeEEEEE
Confidence 356788999875 55 45568999999999999999999999999999999999999997 56999999999999999
Q ss_pred cCCCCceeEEeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeeEEec-CCCeeEEEEecCCCEEEEEEcCC
Q 003236 626 TENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAIEN 704 (837)
Q Consensus 626 l~~~~~~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~-~~~i~sl~~sp~g~~llags~dg 704 (837)
+.+++ .+..+.+|...|.+++|++ ..+++|+.||.|++||+.+++++..+.. ...+.++.+ ++..+++++.|+
T Consensus 186 ~~~~~-~~~~~~~h~~~v~~~~~~~---~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg 259 (445)
T 2ovr_B 186 AETGE-CIHTLYGHTSTVRCMHLHE---KRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQY--DGRRVVSGAYDF 259 (445)
T ss_dssp TTTTE-EEEEECCCSSCEEEEEEET---TEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEE--CSSCEEEEETTS
T ss_pred CCcCc-EEEEECCCCCcEEEEEecC---CEEEEEeCCCEEEEEECCCCcEEEEEcCCcccEEEEEE--CCCEEEEEcCCC
Confidence 99865 4788889999999999973 3677999999999999999998888764 567888888 678999999999
Q ss_pred eEEEEECCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEE
Q 003236 705 YISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSL 783 (837)
Q Consensus 705 ~I~iwDl~s~~~~~~l~~h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fspdg~~L 783 (837)
.|++||+++++++..+.+|...|.+++| ++.+|++++ |+.|++||++++ .++..+..|...+.++.++ +.+|
T Consensus 260 ~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~d~~i~i~d~~~~---~~~~~~~~~~~~v~~~~~~--~~~l 332 (445)
T 2ovr_B 260 MVKVWDPETETCLHTLQGHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVETG---NCIHTLTGHQSLTSGMELK--DNIL 332 (445)
T ss_dssp CEEEEEGGGTEEEEEECCCSSCEEEEEE--CSSEEEEEETTSCEEEEETTTC---CEEEEECCCCSCEEEEEEE--TTEE
T ss_pred EEEEEECCCCcEeEEecCCCCceEEEEE--CCCEEEEEeCCCeEEEEECCCC---CEEEEEcCCcccEEEEEEe--CCEE
Confidence 9999999999999999999999999999 788999988 999999999987 6788888888888888875 5689
Q ss_pred EEEEcCCeEEEEECCCCcEE-Eecc---CCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 003236 784 LVIGCYETLELWNMTENKTL-TLSA---HDKLVSSLAASTVNGMVASASHDKCVKIWK 837 (837)
Q Consensus 784 ~sgs~dg~I~IwDl~s~~~~-~l~~---h~~~V~sla~spdg~~LaSgs~DG~I~IWd 837 (837)
++++.|+.|++||+.+++.+ .+.. |...|++++|+ +.+|++|+.||.|+|||
T Consensus 333 ~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~v~iwd 388 (445)
T 2ovr_B 333 VSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN--KNFVITSSDDGTVKLWD 388 (445)
T ss_dssp EEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEEC--SSEEEEEETTSEEEEEE
T ss_pred EEEeCCCeEEEEECCCCcEEEEEccCCCCCCCEEEEEEC--CCEEEEEeCCCeEEEEE
Confidence 99999999999999998877 4444 88999999995 68999999999999996
|
| >4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-31 Score=301.11 Aligned_cols=273 Identities=18% Similarity=0.253 Sum_probs=233.3
Q ss_pred CeEEcccCCCceEEeecCCCCCCCCccccccccCCCeeeeEEEEec-CCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCC
Q 003236 507 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIP-ASTSKVESCHFSPDGKLLATGGHDKKAVLWCTE 585 (837)
Q Consensus 507 ~~v~~Gs~D~~v~~w~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~-~H~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~ 585 (837)
..+++++.|+.|++|...... ....+. .|...|++++|+|++++|++|+.||.|+|||+.
T Consensus 104 ~~l~~~~~d~~v~lw~~~~~~-------------------~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~ 164 (401)
T 4aez_A 104 LNVVAVALERNVYVWNADSGS-------------------VSALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVE 164 (401)
T ss_dssp TSEEEEEETTEEEEEETTTCC-------------------EEEEEECCTTCCEEEEEECTTSSEEEEEETTSCEEEEETT
T ss_pred CCEEEEECCCeEEEeeCCCCc-------------------EeEeeecCCCCCEEEEEECCCCCEEEEECCCCeEEEEECc
Confidence 456778899999999664331 122222 389999999999999999999999999999999
Q ss_pred CCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeEEeeccccceEEEEEcCCCCeEEEEEeCCCcE
Q 003236 586 SFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEI 665 (837)
Q Consensus 586 t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I 665 (837)
+++.+..+..|...|.+++| ++.+|++++.||.|++||+......+..+.+|...|.+++|+|++. +|++++.|+.|
T Consensus 165 ~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~s~~~d~~v 241 (401)
T 4aez_A 165 SQTKLRTMAGHQARVGCLSW--NRHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGL-QLASGGNDNVV 241 (401)
T ss_dssp TCCEEEEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSS-EEEEEETTSCE
T ss_pred CCeEEEEecCCCCceEEEEE--CCCEEEEEcCCCCEEEEecccCcceeeEEcCCCCCeeEEEEcCCCC-EEEEEeCCCeE
Confidence 99999999999999999999 4679999999999999999976777888999999999999999866 66789999999
Q ss_pred EEEECCCCeeeeEEe-cCCCeeEEEEecCCCEEEEEE---cCCeEEEEECCCCeEEEEEcCCCCCEEEEEEcCCCCEEEE
Q 003236 666 RYWSINNGSCAGVFK-CQSGATQMRFQPRLGRILAAA---IENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLAS 741 (837)
Q Consensus 666 ~vwDl~t~~~i~~~~-~~~~i~sl~~sp~g~~llags---~dg~I~iwDl~s~~~~~~l~~h~~~V~sl~~spdg~~Las 741 (837)
++||+++++.+..+. +...|.+++|+|++..+++.+ .|+.|++||+++++++..+. +...|.+++|+|++.+|++
T Consensus 242 ~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~ 320 (401)
T 4aez_A 242 QIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVD-AGSQVTSLIWSPHSKEIMS 320 (401)
T ss_dssp EEEETTCSSEEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEEEEE-CSSCEEEEEECSSSSEEEE
T ss_pred EEccCCCCCccEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEEEEe-CCCcEEEEEECCCCCeEEE
Confidence 999999998887775 467799999999876665544 59999999999999988886 6778999999999999998
Q ss_pred E--e-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE
Q 003236 742 V--S-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL 803 (837)
Q Consensus 742 g--s-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fspdg~~L~sgs~dg~I~IwDl~s~~~~ 803 (837)
+ . |+.|+|||+.++.. .....+..|...|.+++|+|++.+|++++.|+.|++||+.+++.+
T Consensus 321 ~~g~~dg~i~v~~~~~~~~-~~~~~~~~h~~~v~~~~~s~dg~~l~s~~~dg~i~iw~~~~~~~~ 384 (401)
T 4aez_A 321 THGFPDNNLSIWSYSSSGL-TKQVDIPAHDTRVLYSALSPDGRILSTAASDENLKFWRVYDGDHV 384 (401)
T ss_dssp EECTTTCEEEEEEEETTEE-EEEEEEECCSSCCCEEEECTTSSEEEEECTTSEEEEEECCC----
T ss_pred EeecCCCcEEEEecCCccc-eeEEEecCCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCccc
Confidence 4 3 99999999987532 344456788999999999999999999999999999999998876
|
| >3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-32 Score=299.83 Aligned_cols=249 Identities=20% Similarity=0.271 Sum_probs=205.8
Q ss_pred EecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCe--EEEEeccCCCCeEEEEEcC--CCCEEEEEeCCCeEEEEE
Q 003236 550 LIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFT--VKSTLEEHTQWITDVRFSP--SLSRLATSSADRTVRVWD 625 (837)
Q Consensus 550 ~l~~H~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~--~~~~l~~h~~~I~~l~fsp--dg~~Latgs~Dg~I~IWD 625 (837)
.+.+|.+.|++++|+|+|++||+|+.|++|+|||+.++. .+..+.+|.+.|++++|++ ++.+|++|+.|++|+|||
T Consensus 8 ~~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd 87 (316)
T 3bg1_A 8 VDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWR 87 (316)
T ss_dssp ------CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEEC
T ss_pred ecccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEEE
Confidence 456999999999999999999999999999999998765 4678899999999999986 489999999999999999
Q ss_pred cCCCC-ceeEEeeccccceEEEEEcCCC-CeEEEEEeCCCcEEEEECCCCeee---eEE-ecCCCeeEEEEecC------
Q 003236 626 TENPD-YSLRTFTGHSTTVMSLDFHPSK-EDLLCSCDNNSEIRYWSINNGSCA---GVF-KCQSGATQMRFQPR------ 693 (837)
Q Consensus 626 l~~~~-~~~~~~~~h~~~V~sl~fspdg-~~llasgs~Dg~I~vwDl~t~~~i---~~~-~~~~~i~sl~~sp~------ 693 (837)
+.++. .....+.+|...|.+++|+|++ ..+|++++.|+.|++||++.+... ..+ .+...+.++.|+|+
T Consensus 88 ~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~ 167 (316)
T 3bg1_A 88 EENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSL 167 (316)
T ss_dssp CSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECCCCCC---
T ss_pred CCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcceEEEccccCCccc
Confidence 98764 3456778899999999999983 457789999999999999876322 222 13456889999987
Q ss_pred -----------CCEEEEEEcCCeEEEEECCCC---eEEEEEcCCCCCEEEEEEcCCC----CEEEEEe-CCeEEEEEcCC
Q 003236 694 -----------LGRILAAAIENYISILDVETQ---VCRLKLQGHKNQVHSVCWNTSG----EYLASVS-DELVRVWSIGS 754 (837)
Q Consensus 694 -----------g~~llags~dg~I~iwDl~s~---~~~~~l~~h~~~V~sl~~spdg----~~Lasgs-Dg~I~IwDl~s 754 (837)
+.+|++++.|+.|++||++.. .++..+.+|...|.+++|+|++ .+|++++ |++|+|||+.+
T Consensus 168 ~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~las~s~D~~v~iw~~~~ 247 (316)
T 3bg1_A 168 IDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDD 247 (316)
T ss_dssp ---CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSSCSCCEEEEEETTCEEEEEECSS
T ss_pred cccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCceEEEEecCCCCCCCceEEEEcCCCeEEEEEccC
Confidence 368999999999999999754 5677888999999999999986 7899998 99999999986
Q ss_pred CCCc-eeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECC
Q 003236 755 GSKG-ECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMT 798 (837)
Q Consensus 755 ~~~~-~~i~~~~~~~~~I~sv~fspdg~~L~sgs~dg~I~IwDl~ 798 (837)
.... .....+..|...|.+++|+|++.+|++++.|+.|+||+..
T Consensus 248 ~~~~~~~~~~~~~~~~~v~~v~~sp~g~~las~~~D~~v~lw~~~ 292 (316)
T 3bg1_A 248 ASSNTWSPKLLHKFNDVVWHVSWSITANILAVSGGDNKVTLWKES 292 (316)
T ss_dssp TTCCCCBCCEEEECSSCEEEEEECTTTCCEEEEESSSCEEEEEEC
T ss_pred ccccchhhhhhhcCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEEC
Confidence 3211 1222345678899999999999999999999999999975
|
| >2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.7e-32 Score=292.19 Aligned_cols=247 Identities=19% Similarity=0.359 Sum_probs=210.5
Q ss_pred EEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCC-CceeEEeeccccceEEEEEcCC-CCeEEEEEeCCCcEEEE
Q 003236 591 STLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENP-DYSLRTFTGHSTTVMSLDFHPS-KEDLLCSCDNNSEIRYW 668 (837)
Q Consensus 591 ~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~~-~~~~~~~~~h~~~V~sl~fspd-g~~llasgs~Dg~I~vw 668 (837)
..+.+|.+.|++++|+|++++|++|+.|++|+|||+... ...+..+.+|...|.+++|+++ ...+|++|+.|++|++|
T Consensus 3 ~~~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iW 82 (297)
T 2pm7_B 3 VIANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIW 82 (297)
T ss_dssp EECCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEE
T ss_pred eeccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEEE
Confidence 457789999999999999999999999999999999753 2356888999999999999864 24578899999999999
Q ss_pred ECCCCe--eeeEEe-cCCCeeEEEEecC--CCEEEEEEcCCeEEEEECCCCe--EEEEEcCCCCCEEEEEEcCC------
Q 003236 669 SINNGS--CAGVFK-CQSGATQMRFQPR--LGRILAAAIENYISILDVETQV--CRLKLQGHKNQVHSVCWNTS------ 735 (837)
Q Consensus 669 Dl~t~~--~i~~~~-~~~~i~sl~~sp~--g~~llags~dg~I~iwDl~s~~--~~~~l~~h~~~V~sl~~spd------ 735 (837)
|+++++ .+..+. +...|.+++|+|+ +..|++++.|+.|++||+++.. ....+.+|...|.+++|+|+
T Consensus 83 d~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~ 162 (297)
T 2pm7_B 83 KEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDG 162 (297)
T ss_dssp EBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEECCCC-----
T ss_pred EcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeecccCccceEeecCCcccccc
Confidence 999874 334443 4567999999997 7899999999999999998753 24567789999999999997
Q ss_pred -------CCEEEEEe-CCeEEEEEcCCCCC-ceeEEEeecCCCceEEEEEeCCC---CEEEEEEcCCeEEEEECCCCc--
Q 003236 736 -------GEYLASVS-DELVRVWSIGSGSK-GECIHELSCTGNKFHSCVFHPTF---PSLLVIGCYETLELWNMTENK-- 801 (837)
Q Consensus 736 -------g~~Lasgs-Dg~I~IwDl~s~~~-~~~i~~~~~~~~~I~sv~fspdg---~~L~sgs~dg~I~IwDl~s~~-- 801 (837)
+.+|++++ |+.|+|||++++.. ......+.+|...|.+++|+|++ .+|++++.|++|+|||+.+..
T Consensus 163 ~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~~~~~~ 242 (297)
T 2pm7_B 163 EHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDNEQGP 242 (297)
T ss_dssp -------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSC
T ss_pred cCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCceEEEEEECCCcEEEEEeCCCCCc
Confidence 56899998 99999999987642 22566788999999999999985 789999999999999997743
Q ss_pred --EEEe--ccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 003236 802 --TLTL--SAHDKLVSSLAASTVNGMVASASHDKCVKIWK 837 (837)
Q Consensus 802 --~~~l--~~h~~~V~sla~spdg~~LaSgs~DG~I~IWd 837 (837)
...+ ..|...|.+++|+|++++||+++.||.|+||+
T Consensus 243 ~~~~~~~~~~~~~~v~~~~~s~~g~~las~~~D~~v~lw~ 282 (297)
T 2pm7_B 243 WKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWK 282 (297)
T ss_dssp CEEEESSSSCCSSCEEEEEECSSSCCEEEEETTSCEEEEE
T ss_pred cceeeeecccCCCcEEEEEECCCCCEEEEEcCCCcEEEEE
Confidence 1223 46888999999999999999999999999995
|
| >3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.9e-32 Score=296.50 Aligned_cols=288 Identities=17% Similarity=0.234 Sum_probs=236.9
Q ss_pred CCceEEEEecCCCCCcccCCCccccCCCeEEcccCCCceEEeecCCCCCCCCccccccccCCCeeeeEEEEe--cCCCCC
Q 003236 480 SSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLI--PASTSK 557 (837)
Q Consensus 480 ~~~s~~~~~~~~~~~~~~~~~~l~~~~~~v~~Gs~D~~v~~w~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l--~~H~~~ 557 (837)
.....+.|+++. .+.+..+.+++.++.|++|..... .....+..+ ..|...
T Consensus 19 ~~v~~i~~~p~~-----------~~~~~~~~~~~~~~~v~vw~~~~~----------------~~~~~~~~~~~~~~~~~ 71 (366)
T 3k26_A 19 QPLFGVQFNWHS-----------KEGDPLVFATVGSNRVTLYECHSQ----------------GEIRLLQSYVDADADEN 71 (366)
T ss_dssp SCEEEEEECTTC-----------CTTSCEEEEEEETTEEEEEEECGG----------------GCEEEEEEEECSCTTCC
T ss_pred CceEEEEEeccc-----------CCCCceEEEECCCCEEEEEEcCCC----------------cEEEeeeeccccCCCCc
Confidence 355666666642 122345555666679999966432 112222222 248899
Q ss_pred eEEEEEcCC----CCEEEEEECCCcEEEEeCCCCeEEEEeccCCCCeEEEEEcC-CCCEEEEEeCCCeEEEEEcCCCCce
Q 003236 558 VESCHFSPD----GKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSP-SLSRLATSSADRTVRVWDTENPDYS 632 (837)
Q Consensus 558 V~sl~fSpd----g~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~I~~l~fsp-dg~~Latgs~Dg~I~IWDl~~~~~~ 632 (837)
|++++|+|+ +.+|++|+.||.|+|||+.+++.+..+.+|...|.+++|+| ++.+|++++.||.|++||+.+++.
T Consensus 72 v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~- 150 (366)
T 3k26_A 72 FYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTL- 150 (366)
T ss_dssp EEEEEEEECTTTCCEEEEEEETTCEEEEECTTTCCEEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEE-
T ss_pred EEEEEeccCCCCCCCEEEEecCCCEEEEEEchhceEeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeE-
Confidence 999999999 67999999999999999999999999999999999999999 899999999999999999998653
Q ss_pred eEEe---eccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeeEEe-----------------------------
Q 003236 633 LRTF---TGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK----------------------------- 680 (837)
Q Consensus 633 ~~~~---~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~----------------------------- 680 (837)
+..+ .+|...|.+++|+|++. ++++++.||.|++||+++++....+.
T Consensus 151 ~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (366)
T 3k26_A 151 VAIFGGVEGHRDEVLSADYDLLGE-KIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDI 229 (366)
T ss_dssp EEEECSTTSCSSCEEEEEECTTSS-EEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSS
T ss_pred EEEecccccccCceeEEEECCCCC-EEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccC
Confidence 5555 68999999999999876 56688899999999999876554332
Q ss_pred cCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCC--------------eEEEEEcCCCCCEEEEEEcCC--CCEEEEEe-
Q 003236 681 CQSGATQMRFQPRLGRILAAAIENYISILDVETQ--------------VCRLKLQGHKNQVHSVCWNTS--GEYLASVS- 743 (837)
Q Consensus 681 ~~~~i~sl~~sp~g~~llags~dg~I~iwDl~s~--------------~~~~~l~~h~~~V~sl~~spd--g~~Lasgs- 743 (837)
+...|.+++|+ +.++++++.|+.|++||+++. ..+..+..|...|++++|+|+ +.+|++++
T Consensus 230 ~~~~v~~~~~~--~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~ 307 (366)
T 3k26_A 230 HRNYVDCVRWL--GDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQ 307 (366)
T ss_dssp CSSCCCEEEEE--TTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSSEEEEECT
T ss_pred CcceEEEEEEc--CCEEEEEecCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCCcEEEEEec
Confidence 56779999999 679999999999999999876 347888899999999999999 99999999
Q ss_pred CCeEEEEEcCCCCCce-eEEEeecC--CCceEEEEEeCCCCEEEEEEcCCeEEEEECC
Q 003236 744 DELVRVWSIGSGSKGE-CIHELSCT--GNKFHSCVFHPTFPSLLVIGCYETLELWNMT 798 (837)
Q Consensus 744 Dg~I~IwDl~s~~~~~-~i~~~~~~--~~~I~sv~fspdg~~L~sgs~dg~I~IwDl~ 798 (837)
|+.|++||+.++.... .+..+..| ...|.+++|+|++.+|++++.|+.|++||+.
T Consensus 308 dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~ 365 (366)
T 3k26_A 308 VGKLYVWDLEVEDPHKAKCTTLTHHKCGAAIRQTSFSRDSSILIAVCDDASIWRWDRL 365 (366)
T ss_dssp TSCEEEEECCSSSGGGCEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred CCcEEEEECCCCCCccccceEEcccccCCceEEEEeCCCCCeEEEEeCCCEEEEEEec
Confidence 9999999999875432 45566666 7899999999999999999999999999985
|
| >4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A | Back alignment and structure |
|---|
Probab=100.00 E-value=6.3e-31 Score=297.39 Aligned_cols=272 Identities=19% Similarity=0.308 Sum_probs=233.0
Q ss_pred CeEEcccCCCceEEeecCCCCCCCCccccccccCCCeeeeEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCC
Q 003236 507 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES 586 (837)
Q Consensus 507 ~~v~~Gs~D~~v~~w~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~H~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t 586 (837)
+++++| +|++|++|....+ ....+..+.+|...|+||+|+|||++||+|+.||+|+|||+.+
T Consensus 117 n~lAvg-ld~tV~lWd~~tg-----------------~~~~~~~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~ 178 (420)
T 4gga_A 117 NVLAVA-LDNSVYLWSASSG-----------------DILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQ 178 (420)
T ss_dssp SEEEEE-ETTEEEEEETTTC-----------------CEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTT
T ss_pred CEEEEE-eCCEEEEEECCCC-----------------CEEEEEEecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCC
Confidence 577776 5899999965433 1122334568899999999999999999999999999999999
Q ss_pred CeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeEEeeccccceEEEEEcCCCCeEEEEEeCCCcEE
Q 003236 587 FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIR 666 (837)
Q Consensus 587 ~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~ 666 (837)
++.+..+.+|...|.++.|+ +.+|++|+.|+.+++||.......+..+.+|...+.++.|+|++. ++++++.|+.|+
T Consensus 179 ~~~~~~~~~h~~~v~~~s~~--~~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~~~g~-~l~s~~~D~~v~ 255 (420)
T 4gga_A 179 QKRLRNMTSHSARVGSLSWN--SYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGR-HLASGGNDNLVN 255 (420)
T ss_dssp TEEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSS-EEEEEETTSCEE
T ss_pred CcEEEEEeCCCCceEEEeeC--CCEEEEEeCCCceeEeeecccceeeEEecccccceeeeeecCCCC-eeeeeeccccce
Confidence 99999999999999998885 679999999999999999988878889999999999999999976 666899999999
Q ss_pred EEECCCCeee----e-EEecCCCeeEEEEecCCCEEE-EEE--cCCeEEEEECCCCeEEEEEcCCCCCEEEEEEcCCCCE
Q 003236 667 YWSINNGSCA----G-VFKCQSGATQMRFQPRLGRIL-AAA--IENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEY 738 (837)
Q Consensus 667 vwDl~t~~~i----~-~~~~~~~i~sl~~sp~g~~ll-ags--~dg~I~iwDl~s~~~~~~l~~h~~~V~sl~~spdg~~ 738 (837)
+||+.+++.. . ...+...|.+++|+|.+..++ +++ .|+.|++||+.++.+...+..| ..+.++.|++++..
T Consensus 256 i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~~~~~-~~v~~~~~~~~~~~ 334 (420)
T 4gga_A 256 VWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAH-SQVCSILWSPHYKE 334 (420)
T ss_dssp EEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEEEEECS-SCEEEEEEETTTTE
T ss_pred EEeeccccccceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccccceeeccc-cceeeeeecCCCCe
Confidence 9999876532 2 223467799999999766554 333 5899999999999999888754 67899999999998
Q ss_pred EEEEe---CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE
Q 003236 739 LASVS---DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL 803 (837)
Q Consensus 739 Lasgs---Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fspdg~~L~sgs~dg~I~IwDl~s~~~~ 803 (837)
+++++ |+.|+|||+.++ .++..+.+|...|.+++|+|++.+|++++.|++|+|||+.+....
T Consensus 335 lv~~sg~~d~~I~iwd~~~~---~~v~~l~gH~~~V~~l~~spdg~~l~S~s~D~tvriWdv~~~~~~ 399 (420)
T 4gga_A 335 LISGHGFAQNQLVIWKYPTM---AKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFELDPA 399 (420)
T ss_dssp EEEEECTTTCCEEEEETTTC---CEEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCSCSSCC
T ss_pred EEEEEecCCCEEEEEECCCC---cEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCCCCcc
Confidence 88764 889999999987 788899999999999999999999999999999999999776544
|
| >3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-31 Score=294.84 Aligned_cols=251 Identities=21% Similarity=0.308 Sum_probs=217.2
Q ss_pred EEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCC--CCeEEEEeccCCCCeEEEEEcCC--CCEEEEEeCCCeEEE
Q 003236 548 FQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTE--SFTVKSTLEEHTQWITDVRFSPS--LSRLATSSADRTVRV 623 (837)
Q Consensus 548 ~~~l~~H~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~--t~~~~~~l~~h~~~I~~l~fspd--g~~Latgs~Dg~I~I 623 (837)
+..+.+|.+.|++++|+|++++||+|+.||.|+|||+. +.+.+..+.+|...|++++|+++ +.+|++++.||.|++
T Consensus 4 ~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~i 83 (379)
T 3jrp_A 4 VVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLI 83 (379)
T ss_dssp -CCEEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSCEEE
T ss_pred cEEecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCEEEE
Confidence 45678999999999999999999999999999999998 66777889999999999999987 999999999999999
Q ss_pred EEcCCCCc-eeEEeeccccceEEEEEcCC--CCeEEEEEeCCCcEEEEECCCCeeee---EEecCCCeeEEEEec-----
Q 003236 624 WDTENPDY-SLRTFTGHSTTVMSLDFHPS--KEDLLCSCDNNSEIRYWSINNGSCAG---VFKCQSGATQMRFQP----- 692 (837)
Q Consensus 624 WDl~~~~~-~~~~~~~h~~~V~sl~fspd--g~~llasgs~Dg~I~vwDl~t~~~i~---~~~~~~~i~sl~~sp----- 692 (837)
||+.++.. .+..+..|...|.+++|+|+ +. ++++++.|+.|++||++++.... ...+...|.+++|+|
T Consensus 84 wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 162 (379)
T 3jrp_A 84 WKEENGRWSQIAVHAVHSASVNSVQWAPHEYGP-LLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEE 162 (379)
T ss_dssp EEEETTEEEEEEEECCCSSCEEEEEECCGGGCS-EEEEEETTSEEEEEECCTTSCCCEEEEECCTTCEEEEEECCCC---
T ss_pred EEcCCCceeEeeeecCCCcceEEEEeCCCCCCC-EEEEecCCCcEEEEecCCCCceeeEEecCCCCceEEEEEcCccccc
Confidence 99998652 46777889999999999998 55 67789999999999999874332 223467899999999
Q ss_pred --------CCCEEEEEEcCCeEEEEECCCC----eEEEEEcCCCCCEEEEEEcCC---CCEEEEEe-CCeEEEEEcCCCC
Q 003236 693 --------RLGRILAAAIENYISILDVETQ----VCRLKLQGHKNQVHSVCWNTS---GEYLASVS-DELVRVWSIGSGS 756 (837)
Q Consensus 693 --------~g~~llags~dg~I~iwDl~s~----~~~~~l~~h~~~V~sl~~spd---g~~Lasgs-Dg~I~IwDl~s~~ 756 (837)
++..+++++.|+.|++||++++ .....+.+|...|.+++|+|+ +.+|++++ |+.|+|||++++.
T Consensus 163 ~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~~ 242 (379)
T 3jrp_A 163 DGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQ 242 (379)
T ss_dssp -------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTT
T ss_pred cccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeEEEEeCCCEEEEEeCCCCC
Confidence 6899999999999999999865 356678889999999999999 89999999 9999999999864
Q ss_pred CceeEEEe--ecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCC
Q 003236 757 KGECIHEL--SCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTE 799 (837)
Q Consensus 757 ~~~~i~~~--~~~~~~I~sv~fspdg~~L~sgs~dg~I~IwDl~s 799 (837)
.......+ ..+...|.+++|+|++.+|++++.|+.|++||+..
T Consensus 243 ~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~ 287 (379)
T 3jrp_A 243 GPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENL 287 (379)
T ss_dssp SCCEEEESSSSCCSSCEEEEEECSSSCCEEEEESSSSEEEEEEEE
T ss_pred ccceeeeeccccCCCcEEEEEEcCCCCEEEEecCCCcEEEEeCCC
Confidence 32233333 33778899999999999999999999999999873
|
| >3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.2e-31 Score=282.95 Aligned_cols=268 Identities=16% Similarity=0.204 Sum_probs=231.0
Q ss_pred CCCeEEcccCCCceEEeecCCCCCCCCccccccccCCCeeeeEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEeC
Q 003236 505 MDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCT 584 (837)
Q Consensus 505 ~~~~v~~Gs~D~~v~~w~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~H~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~ 584 (837)
.+.++++|+.|+.|++|..... .....+..|...|.+++|+|++++|++|+.|+.|++|++
T Consensus 28 ~~~~l~s~~~dg~v~vw~~~~~-------------------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~ 88 (313)
T 3odt_A 28 DDSKVASVSRDGTVRLWSKDDQ-------------------WLGTVVYTGQGFLNSVCYDSEKELLLFGGKDTMINGVPL 88 (313)
T ss_dssp ETTEEEEEETTSEEEEEEESSS-------------------EEEEEEEECSSCEEEEEEETTTTEEEEEETTSCEEEEET
T ss_pred CCCEEEEEEcCCcEEEEECCCC-------------------EEEEEeecCCccEEEEEECCCCCEEEEecCCCeEEEEEe
Confidence 3467899999999999965322 235667789999999999999999999999999999998
Q ss_pred CCC---eEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeEEeeccccceEEEEEcCCCCeEEEEEeC
Q 003236 585 ESF---TVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDN 661 (837)
Q Consensus 585 ~t~---~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~sl~fspdg~~llasgs~ 661 (837)
... +.+..+..|...|.+++| ++.+|++++.|+.|++|| .......+..|...|.+++|.|....++++++.
T Consensus 89 ~~~~~~~~~~~~~~~~~~i~~~~~--~~~~l~~~~~d~~i~~~d---~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~ 163 (313)
T 3odt_A 89 FATSGEDPLYTLIGHQGNVCSLSF--QDGVVISGSWDKTAKVWK---EGSLVYNLQAHNASVWDAKVVSFSENKFLTASA 163 (313)
T ss_dssp TCCTTSCC-CEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEE---TTEEEEEEECCSSCEEEEEEEETTTTEEEEEET
T ss_pred eecCCCCcccchhhcccCEEEEEe--cCCEEEEEeCCCCEEEEc---CCcEEEecccCCCceeEEEEccCCCCEEEEEEC
Confidence 653 567788899999999999 577999999999999999 234577888899999999999844557779999
Q ss_pred CCcEEEEECCCCeeeeEEe--cCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEcCCCCEE
Q 003236 662 NSEIRYWSINNGSCAGVFK--CQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYL 739 (837)
Q Consensus 662 Dg~I~vwDl~t~~~i~~~~--~~~~i~sl~~sp~g~~llags~dg~I~iwDl~s~~~~~~l~~h~~~V~sl~~spdg~~L 739 (837)
|+.|++||. .+....+. +...+.+++|+|++. +++++.|+.|++||+++++.+..+..|...|++++|+|++. |
T Consensus 164 d~~i~i~d~--~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~-l 239 (313)
T 3odt_A 164 DKTIKLWQN--DKVIKTFSGIHNDVVRHLAVVDDGH-FISCSNDGLIKLVDMHTGDVLRTYEGHESFVYCIKLLPNGD-I 239 (313)
T ss_dssp TSCEEEEET--TEEEEEECSSCSSCEEEEEEEETTE-EEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSC-E
T ss_pred CCCEEEEec--CceEEEEeccCcccEEEEEEcCCCe-EEEccCCCeEEEEECCchhhhhhhhcCCceEEEEEEecCCC-E
Confidence 999999994 45555554 567899999999977 99999999999999999999999999999999999999995 5
Q ss_pred EEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEEE
Q 003236 740 ASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLT 804 (837)
Q Consensus 740 asgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fspdg~~L~sgs~dg~I~IwDl~s~~~~~ 804 (837)
++++ |+.|++||+.++ ..+..+..+...|.+++|+|++. +++++.|+.|++||+.+++...
T Consensus 240 ~~~~~dg~v~iwd~~~~---~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~iw~~~~~~~~~ 301 (313)
T 3odt_A 240 VSCGEDRTVRIWSKENG---SLKQVITLPAISIWSVDCMSNGD-IIVGSSDNLVRIFSQEKSRWAS 301 (313)
T ss_dssp EEEETTSEEEEECTTTC---CEEEEEECSSSCEEEEEECTTSC-EEEEETTSCEEEEESCGGGCCC
T ss_pred EEEecCCEEEEEECCCC---ceeEEEeccCceEEEEEEccCCC-EEEEeCCCcEEEEeCCCCceee
Confidence 5555 999999999988 67888888999999999999998 7789999999999999887653
|
| >3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-31 Score=296.93 Aligned_cols=267 Identities=15% Similarity=0.166 Sum_probs=221.5
Q ss_pred CeEEcccCCCceEEeecCCCCCCCCccccccccCCCeeeeEEEEecCCCCCeEEEEEcC-CCCEEEEEECCCcEEEEeCC
Q 003236 507 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSP-DGKLLATGGHDKKAVLWCTE 585 (837)
Q Consensus 507 ~~v~~Gs~D~~v~~w~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~H~~~V~sl~fSp-dg~~Lasgs~Dg~I~VWd~~ 585 (837)
.++++|+.|+.|++|...... ......+.+|.+.|.+++|+| ++.+|++++.|+.|++||+.
T Consensus 87 ~~l~s~~~dg~i~iwd~~~~~-----------------~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~ 149 (383)
T 3ei3_B 87 TTVAVGSKGGDIILWDYDVQN-----------------KTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIRGATTLRDFS 149 (383)
T ss_dssp TEEEEEEBTSCEEEEETTSTT-----------------CEEEECCCSTTCBEEEEEEETTEEEEEEEEETTTEEEEEETT
T ss_pred CEEEEEcCCCeEEEEeCCCcc-----------------cceeeecCCcCCceeEEEeCCCCCCEEEEEeCCCEEEEEECC
Confidence 689999999999999765331 111222347999999999999 78999999999999999998
Q ss_pred CCeEEEEecc---CCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeEEeeccccceEEEEEcCCCCeEEEEEeCC
Q 003236 586 SFTVKSTLEE---HTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN 662 (837)
Q Consensus 586 t~~~~~~l~~---h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~sl~fspdg~~llasgs~D 662 (837)
+ ..+..+.. |...|.+++|+|++.+|++++.|+.|++||+. ...+..+.+|...|.+++|+|++..++++++.|
T Consensus 150 ~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~--~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d 226 (383)
T 3ei3_B 150 G-SVIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGLD--GHEIFKEKLHKAKVTHAEFNPRCDWLMATSSVD 226 (383)
T ss_dssp S-CEEEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEETT--SCEEEEEECSSSCEEEEEECSSCTTEEEEEETT
T ss_pred C-CceEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEECC--CCEEEEeccCCCcEEEEEECCCCCCEEEEEeCC
Confidence 6 44545543 45889999999999999999999999999995 335788889999999999999988788899999
Q ss_pred CcEEEEECCC----CeeeeEEecCCCeeEEEEec-CCCEEEEEEcCCeEEEEECCCCeEEEEEcCCC-------------
Q 003236 663 SEIRYWSINN----GSCAGVFKCQSGATQMRFQP-RLGRILAAAIENYISILDVETQVCRLKLQGHK------------- 724 (837)
Q Consensus 663 g~I~vwDl~t----~~~i~~~~~~~~i~sl~~sp-~g~~llags~dg~I~iwDl~s~~~~~~l~~h~------------- 724 (837)
+.|++||+++ +.++..+.+...+.+++|+| ++.+|++++.|+.|++||++++.....+..|.
T Consensus 227 ~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (383)
T 3ei3_B 227 ATVKLWDLRNIKDKNSYIAEMPHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQIIIHPHRQFQHLTPIKAT 306 (383)
T ss_dssp SEEEEEEGGGCCSTTCEEEEEECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTSCSEEEECCBCCCTTSCCCCCE
T ss_pred CEEEEEeCCCCCcccceEEEecCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCccccccccccccccccccceEEe
Confidence 9999999998 67788888888999999999 99999999999999999999876655555432
Q ss_pred ----CCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeec--CCCceEEEEEeCCCCEEEEEEcCCeEEEEEC
Q 003236 725 ----NQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSC--TGNKFHSCVFHPTFPSLLVIGCYETLELWNM 797 (837)
Q Consensus 725 ----~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~--~~~~I~sv~fspdg~~L~sgs~dg~I~IwDl 797 (837)
..+..++|+|++++ +++ |+.|+|||+.++ .++..+.. +...+..++|+|++.+|++++ |+.|+|||+
T Consensus 307 ~~p~~~~~~~~~s~dg~~--s~s~d~~i~iwd~~~~---~~~~~l~~~~~~~~~~~~~~s~~g~~l~s~s-d~~i~iw~~ 380 (383)
T 3ei3_B 307 WHPMYDLIVAGRYPDDQL--LLNDKRTIDIYDANSG---GLVHQLRDPNAAGIISLNKFSPTGDVLASGM-GFNILIWNR 380 (383)
T ss_dssp ECSSSSEEEEECBCCTTT--CTTCCCCEEEEETTTC---CEEEEECBTTBCSCCCEEEECTTSSEEEEEE-TTEEEEEEC
T ss_pred ccCCCCceEEEecCCccc--ccCCCCeEEEEecCCC---ceeeeecCCCCCceEEEEEEecCccEEEEec-CCcEEEEec
Confidence 23444666666666 444 999999999987 66777776 456777889999999999996 999999998
Q ss_pred CC
Q 003236 798 TE 799 (837)
Q Consensus 798 ~s 799 (837)
++
T Consensus 381 ~~ 382 (383)
T 3ei3_B 381 ED 382 (383)
T ss_dssp C-
T ss_pred CC
Confidence 75
|
| >2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A | Back alignment and structure |
|---|
Probab=100.00 E-value=7.8e-32 Score=302.39 Aligned_cols=278 Identities=14% Similarity=0.226 Sum_probs=235.3
Q ss_pred CeEEEEEcCCCCEE-EEEECCCcEEEEeCCCCe----EEEEeccCCCCeEEEEEcC-CCCEEEEEeCCCeEEEEEcCCCC
Q 003236 557 KVESCHFSPDGKLL-ATGGHDKKAVLWCTESFT----VKSTLEEHTQWITDVRFSP-SLSRLATSSADRTVRVWDTENPD 630 (837)
Q Consensus 557 ~V~sl~fSpdg~~L-asgs~Dg~I~VWd~~t~~----~~~~l~~h~~~I~~l~fsp-dg~~Latgs~Dg~I~IWDl~~~~ 630 (837)
....++++|+...+ ++++.||.|+||++.... .+..+.+|.+.|++++|+| ++.+|++|+.||+|+|||+.++.
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~ 115 (402)
T 2aq5_A 36 DSGFCAVNPKFMALICEASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGG 115 (402)
T ss_dssp SSCSEEECSSEEEEEBCCSSSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTC
T ss_pred CCCcEEECCCeEEEEEEEcCCCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCC
Confidence 34568899876544 457889999999986543 2345778999999999999 89999999999999999999863
Q ss_pred ------ceeEEeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeeEEe---cCCCeeEEEEecCCCEEEEEE
Q 003236 631 ------YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK---CQSGATQMRFQPRLGRILAAA 701 (837)
Q Consensus 631 ------~~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~---~~~~i~sl~~sp~g~~llags 701 (837)
..+..+.+|...|.+++|+|++..+|++++.|+.|++||+++++++..+. +...|.+++|+|++..|++++
T Consensus 116 ~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 195 (402)
T 2aq5_A 116 LVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSC 195 (402)
T ss_dssp CSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEECTTTCCSCEEEEEECTTSSCEEEEE
T ss_pred CccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEecCCCCCceEEEEECCCCCEEEEEe
Confidence 34778889999999999999987788899999999999999999998883 467899999999999999999
Q ss_pred cCCeEEEEECCCCeEEEEE-cCCCCC-EEEEEEcCCCCEEEEE---e-CCeEEEEEcCCCCCceeEEEeecCCCceEEEE
Q 003236 702 IENYISILDVETQVCRLKL-QGHKNQ-VHSVCWNTSGEYLASV---S-DELVRVWSIGSGSKGECIHELSCTGNKFHSCV 775 (837)
Q Consensus 702 ~dg~I~iwDl~s~~~~~~l-~~h~~~-V~sl~~spdg~~Lasg---s-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~ 775 (837)
.|+.|++||+++++.+..+ ..|... +.+++|+|++.+|+++ + |+.|++||+++......... ..+...+.+++
T Consensus 196 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~-~~~~~~v~~~~ 274 (402)
T 2aq5_A 196 RDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQE-LDTSSGVLLPF 274 (402)
T ss_dssp TTSEEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSCSEEEE-CCCCSSCEEEE
T ss_pred cCCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCCceEEe-ccCCCceeEEE
Confidence 9999999999999999988 788776 8999999999999998 5 89999999988653222222 24567799999
Q ss_pred EeCCCCEEEEEE-cCCeEEEEECCCCc--EEEe--ccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 003236 776 FHPTFPSLLVIG-CYETLELWNMTENK--TLTL--SAHDKLVSSLAASTVNGMVASASHDKCVKIWK 837 (837)
Q Consensus 776 fspdg~~L~sgs-~dg~I~IwDl~s~~--~~~l--~~h~~~V~sla~spdg~~LaSgs~DG~I~IWd 837 (837)
|+|++.+|++++ .|+.|++||+.+++ ...+ ..|...|.+++|+|++.++++ .|+.+++|+
T Consensus 275 ~s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~~~~~~~~v~~~~~sp~~~~~~s--~~~~~~~~~ 339 (402)
T 2aq5_A 275 FDPDTNIVYLCGKGDSSIRYFEITSEAPFLHYLSMFSSKESQRGMGYMPKRGLEVN--KCEIARFYK 339 (402)
T ss_dssp EETTTTEEEEEETTCSCEEEEEECSSTTCEEEEEEECCSSCCSEEEECCGGGSCGG--GTEEEEEEE
T ss_pred EcCCCCEEEEEEcCCCeEEEEEecCCCcceEeecccccCCcccceEEeccccccee--cceeEEEEE
Confidence 999999997665 69999999999887 3333 346799999999999988775 567899995
|
| >3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-32 Score=296.67 Aligned_cols=246 Identities=19% Similarity=0.325 Sum_probs=204.9
Q ss_pred EeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCc-eeEEeeccccceEEEEEcCC-CCeEEEEEeCCCcEEEEE
Q 003236 592 TLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDY-SLRTFTGHSTTVMSLDFHPS-KEDLLCSCDNNSEIRYWS 669 (837)
Q Consensus 592 ~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~~~~-~~~~~~~h~~~V~sl~fspd-g~~llasgs~Dg~I~vwD 669 (837)
.+.+|.+.|++++|+|++++|++|+.|++|+|||+.++.. .+..+.+|...|.+++|+++ ...+|++|+.|++|++||
T Consensus 8 ~~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd 87 (316)
T 3bg1_A 8 VDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWR 87 (316)
T ss_dssp ------CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEEC
T ss_pred ecccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEEE
Confidence 4568999999999999999999999999999999987643 46778899999999999863 244777999999999999
Q ss_pred CCCCe--eeeEEe-cCCCeeEEEEecC--CCEEEEEEcCCeEEEEECCCCe---EEEEEcCCCCCEEEEEEcCC------
Q 003236 670 INNGS--CAGVFK-CQSGATQMRFQPR--LGRILAAAIENYISILDVETQV---CRLKLQGHKNQVHSVCWNTS------ 735 (837)
Q Consensus 670 l~t~~--~i~~~~-~~~~i~sl~~sp~--g~~llags~dg~I~iwDl~s~~---~~~~l~~h~~~V~sl~~spd------ 735 (837)
++++. .+..+. +...|.+++|+|+ +.+|++++.|+.|++||++... ....+.+|...|.+++|+|+
T Consensus 88 ~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~ 167 (316)
T 3bg1_A 88 EENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSL 167 (316)
T ss_dssp CSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECCCCCC---
T ss_pred CCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcceEEEccccCCccc
Confidence 99874 344443 4567999999998 7789999999999999998753 23455679999999999997
Q ss_pred -----------CCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCC----CEEEEEEcCCeEEEEECCC
Q 003236 736 -----------GEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTF----PSLLVIGCYETLELWNMTE 799 (837)
Q Consensus 736 -----------g~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fspdg----~~L~sgs~dg~I~IwDl~s 799 (837)
+.+|++++ |+.|+|||++......++..+..|...|.+++|+|++ .+|++++.|++|+|||+.+
T Consensus 168 ~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~las~s~D~~v~iw~~~~ 247 (316)
T 3bg1_A 168 IDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDD 247 (316)
T ss_dssp ---CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSSCSCCEEEEEETTCEEEEEECSS
T ss_pred cccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCceEEEEecCCCCCCCceEEEEcCCCeEEEEEccC
Confidence 46888888 9999999997654335677888999999999999987 7899999999999999876
Q ss_pred C---c--EEEeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 003236 800 N---K--TLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 837 (837)
Q Consensus 800 ~---~--~~~l~~h~~~V~sla~spdg~~LaSgs~DG~I~IWd 837 (837)
. . ...+..|...|.+++|+|++.+||+++.||.|+||+
T Consensus 248 ~~~~~~~~~~~~~~~~~v~~v~~sp~g~~las~~~D~~v~lw~ 290 (316)
T 3bg1_A 248 ASSNTWSPKLLHKFNDVVWHVSWSITANILAVSGGDNKVTLWK 290 (316)
T ss_dssp TTCCCCBCCEEEECSSCEEEEEECTTTCCEEEEESSSCEEEEE
T ss_pred ccccchhhhhhhcCCCcEEEEEEcCCCCEEEEEcCCCeEEEEE
Confidence 3 1 124567899999999999999999999999999996
|
| >3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-30 Score=293.56 Aligned_cols=285 Identities=9% Similarity=0.043 Sum_probs=244.8
Q ss_pred eEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEE-----EeccCCCCeEEEEEcCCCCEEEEEeCCCe
Q 003236 546 TEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKS-----TLEEHTQWITDVRFSPSLSRLATSSADRT 620 (837)
Q Consensus 546 ~~~~~l~~H~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~~~-----~l~~h~~~I~~l~fspdg~~Latgs~Dg~ 620 (837)
..+..+..+. .+.+++|+|++.++++++.|+.|++||+.+++... .+.+|...|.+++|++++.++++++.|+.
T Consensus 114 ~~~~~~~~~~-~~~~~~~s~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~ 192 (433)
T 3bws_A 114 RFISRFKTGF-QPKSVRFIDNTRLAIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHNELWVSQMQANA 192 (433)
T ss_dssp EEEEEEECSS-CBCCCEESSSSEEEEEBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGTEEEEEEGGGTE
T ss_pred eEEEEEcCCC-CceEEEEeCCCeEEEEeCCCCeEEEEECCCCeEeeecCcccccccCCceeEEEEcCCCEEEEEECCCCE
Confidence 4455555554 46699999988888888889999999999998887 44578899999999999999999999999
Q ss_pred EEEEEcCCCCceeEEeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeeEEecCCCeeEEEEecCCCEEEEE
Q 003236 621 VRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAA 700 (837)
Q Consensus 621 I~IWDl~~~~~~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~~~~i~sl~~sp~g~~llag 700 (837)
|++||+.+++ .+..+..|...+.+++|+|++..++++++.|+.|++||+++++.+..+.....+.+++|+|+++.++++
T Consensus 193 v~~~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~ 271 (433)
T 3bws_A 193 VHVFDLKTLA-YKATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRKTDKIGLPRGLLLSKDGKELYIA 271 (433)
T ss_dssp EEEEETTTCC-EEEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEECCCCSEEEEEEECTTSSEEEEE
T ss_pred EEEEECCCce-EEEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEEecCCCCceEEEEcCCCCEEEEE
Confidence 9999998765 467777889999999999999988888888999999999999998888887889999999999999998
Q ss_pred E--------cCCeEEEEECCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEE-e-CCeEEEEEcCCCCCceeEEEeecCCCc
Q 003236 701 A--------IENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASV-S-DELVRVWSIGSGSKGECIHELSCTGNK 770 (837)
Q Consensus 701 s--------~dg~I~iwDl~s~~~~~~l~~h~~~V~sl~~spdg~~Lasg-s-Dg~I~IwDl~s~~~~~~i~~~~~~~~~ 770 (837)
+ .|+.|++||+++++.+..+. |...+.+++|+|+++.++++ + |+.|++||+.++ +.+..+. +...
T Consensus 272 ~~~~~~~~~~dg~i~~~d~~~~~~~~~~~-~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~---~~~~~~~-~~~~ 346 (433)
T 3bws_A 272 QFSASNQESGGGRLGIYSMDKEKLIDTIG-PPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEK---KVQKSIP-VFDK 346 (433)
T ss_dssp EEESCTTCSCCEEEEEEETTTTEEEEEEE-EEECEEEEEECSSTTEEEEEETTTTEEEEEETTTT---EEEEEEE-CSSS
T ss_pred ECCCCccccCCCeEEEEECCCCcEEeecc-CCCCcceEEECCCCCEEEEEecCCCEEEEEECCCC---cEEEEec-CCCC
Confidence 8 47899999999998777663 56689999999999866554 5 999999999876 5555554 5678
Q ss_pred eEEEEEeCCCCEEEEEEc---------------CCeEEEEECCCCcEEEeccCCCCeeEEEEeCCCCEEEEEEC-CCcEE
Q 003236 771 FHSCVFHPTFPSLLVIGC---------------YETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASH-DKCVK 834 (837)
Q Consensus 771 I~sv~fspdg~~L~sgs~---------------dg~I~IwDl~s~~~~~l~~h~~~V~sla~spdg~~LaSgs~-DG~I~ 834 (837)
+.+++|+|++++|++++. ||.|++||+.+++.+....+...+.+++|+|++++|++++. |+.|+
T Consensus 347 ~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~d~~i~ 426 (433)
T 3bws_A 347 PNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWEAGNQPTGLDVSPDNRYLVISDFLDHQIR 426 (433)
T ss_dssp EEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEEECSSSEEEEEECTTSCEEEEEETTTTEEE
T ss_pred CCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCCcEEEEecCCCCCceEEEcCCCCEEEEEECCCCeEE
Confidence 999999999999998887 46999999999998865555678999999999999998875 99999
Q ss_pred EeC
Q 003236 835 IWK 837 (837)
Q Consensus 835 IWd 837 (837)
||+
T Consensus 427 v~~ 429 (433)
T 3bws_A 427 VYR 429 (433)
T ss_dssp EEE
T ss_pred EEE
Confidence 996
|
| >3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-32 Score=300.98 Aligned_cols=279 Identities=14% Similarity=0.168 Sum_probs=219.5
Q ss_pred ccccCCCeEEcccCCCceEEeecCCCCCCCCccccccccCCCeeeeEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEE
Q 003236 501 QLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAV 580 (837)
Q Consensus 501 ~l~~~~~~v~~Gs~D~~v~~w~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~H~~~V~sl~fSpdg~~Lasgs~Dg~I~ 580 (837)
.+.+...++++|+.|+.|++|..... .+..+..+.+|.+.|++++|+|++++|++|+.|++|+
T Consensus 18 ~~s~~g~~l~~~~~d~~i~iw~~~~~-----------------~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~ 80 (377)
T 3dwl_C 18 AFNSQRTEFVTTTATNQVELYEQDGN-----------------GWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAY 80 (377)
T ss_dssp EECSSSSEEECCCSSSCBCEEEEETT-----------------EEEECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEE
T ss_pred EECCCCCEEEEecCCCEEEEEEccCC-----------------ceEEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEE
Confidence 34445579999999999999965422 1234566789999999999999999999999999999
Q ss_pred EEeCCCCe---EEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCc--eeEEeec-cccceEEEEEcCCCCe
Q 003236 581 LWCTESFT---VKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDY--SLRTFTG-HSTTVMSLDFHPSKED 654 (837)
Q Consensus 581 VWd~~t~~---~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~~~~--~~~~~~~-h~~~V~sl~fspdg~~ 654 (837)
|||+.+++ ....+..|...|.+++|+|++++|++++.|+.|++||+.+... ....+.. |...|.+++|+|++.
T Consensus 81 vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~- 159 (377)
T 3dwl_C 81 VYEKRPDGTWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNV- 159 (377)
T ss_dssp EC------CCCCEEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECTTSS-
T ss_pred EEEcCCCCceeeeeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcCCCC-
Confidence 99999876 6777888999999999999999999999999999999997653 3566666 999999999999876
Q ss_pred EEEEEeCCCcEEEEECC------------------CCeeeeEEecCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeE
Q 003236 655 LLCSCDNNSEIRYWSIN------------------NGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVC 716 (837)
Q Consensus 655 llasgs~Dg~I~vwDl~------------------t~~~i~~~~~~~~i~sl~~sp~g~~llags~dg~I~iwDl~s~~~ 716 (837)
+|++++.|+.|++||+. .++++..+.+...|.+++|+|++.+|++++.|+.|++||++++..
T Consensus 160 ~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~ 239 (377)
T 3dwl_C 160 LLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEYPSGGWVHAVGFSPSGNALAYAGHDSSVTIAYPSAPEQ 239 (377)
T ss_dssp EEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECCCCSSSEEEEEECTTSSCEEEEETTTEEC-CEECSTTS
T ss_pred EEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcccCCceEEEEEECCCCCEEEEEeCCCcEEEEECCCCCC
Confidence 67789999999999985 244555555567799999999999999999999999999998876
Q ss_pred ----EEEEcCCCCCEEEEEEcCCCCEEEEEeCCeEEEEEcCCCCC---------------------------ceeE----
Q 003236 717 ----RLKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSK---------------------------GECI---- 761 (837)
Q Consensus 717 ----~~~l~~h~~~V~sl~~spdg~~LasgsDg~I~IwDl~s~~~---------------------------~~~i---- 761 (837)
+..+.+|...|.+++|+|++.+|++++++.+.+|+...... ...+
T Consensus 240 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (377)
T 3dwl_C 240 PPRALITVKLSQLPLRSLLWANESAIVAAGYNYSPILLQGNESGWAHTRDLDAGTSKTSFTHTGNTGEGREEEGPVSFTA 319 (377)
T ss_dssp CEEECCCEECSSSCEEEEEEEETTEEEEEESSSSEEEECCCC---CCSBCCCSCCCCCCBSSSSSBCCCCCC--------
T ss_pred cceeeEeecCCCCceEEEEEcCCCCEEEEEcCCcEEEEEeCCCceEEEeeeccccccccccccccccccccccccccccc
Confidence 77888999999999999999999999977677887752210 0000
Q ss_pred --EEe----------------ecCCCceEEEEEeCCCC----EEEEEEcCCeEEEEEC
Q 003236 762 --HEL----------------SCTGNKFHSCVFHPTFP----SLLVIGCYETLELWNM 797 (837)
Q Consensus 762 --~~~----------------~~~~~~I~sv~fspdg~----~L~sgs~dg~I~IwDl 797 (837)
..+ ..|...|+++++.+... .|++++.||.|+|||+
T Consensus 320 ~~~~~~~~~~~g~~~~~~~~~~~H~~~i~~~~~~~~~~~~~~~~~s~g~Dg~i~iWdl 377 (377)
T 3dwl_C 320 LRSTFRNMDLKGSSQSISSLPTVHQNMIATLRPYAGTPGNITAFTSSGTDGRVVLWTL 377 (377)
T ss_dssp -----------------CCCSSSCSSCEEEEEEEEEETTEEEEEEEEETTSEEEEECC
T ss_pred ccccccchhhccccccccccCccccceeEEEeccCCCCCceEEEEeecCCCcEEEecC
Confidence 011 12888999999766543 5999999999999985
|
| >4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-30 Score=287.09 Aligned_cols=314 Identities=15% Similarity=0.256 Sum_probs=226.8
Q ss_pred CCeEEcccCCCceEEeecCCCCCCCCccccccccCCCeeeeEEE-----EecCCCCCeEEEEEcC-CCCEEEEEECCCcE
Q 003236 506 DRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQ-----LIPASTSKVESCHFSP-DGKLLATGGHDKKA 579 (837)
Q Consensus 506 ~~~v~~Gs~D~~v~~w~s~~~~~~~~~~~~~~~~~~g~~~~~~~-----~l~~H~~~V~sl~fSp-dg~~Lasgs~Dg~I 579 (837)
..++++|+.|+.|++|........... ...... ...+|...|++++|+| ++.+|++++.||.|
T Consensus 56 ~~~l~~~~~dg~i~iw~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i 124 (408)
T 4a11_B 56 GRYMLSGGSDGVIVLYDLENSSRQSYY-----------TCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFTSSSFDKTL 124 (408)
T ss_dssp CCEEEEEETTSCEEEEECCCCSSSSCE-----------EECEEEEECTTCTTCCSSCEEEEEECTTCTTCEEEEETTSEE
T ss_pred CCEEEEEcCCCeEEEEECCCCcccceE-----------eccccccccccccccCCCcEEEEEEccCCCcEEEEEeCCCeE
Confidence 478999999999999977654322111 111111 1246999999999999 78899999999999
Q ss_pred EEEeCCCCeEEEEeccCCCCeEEEEEcCC---CCEEEEEeCCCeEEEEEcCCCCceeEEeeccccceEEEEEcCCCCeEE
Q 003236 580 VLWCTESFTVKSTLEEHTQWITDVRFSPS---LSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLL 656 (837)
Q Consensus 580 ~VWd~~t~~~~~~l~~h~~~I~~l~fspd---g~~Latgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~sl~fspdg~~ll 656 (837)
++||+.+++....+. +...+.++.|++. +.+|++++.|+.|++||+.++.. +..+..|...|.+++|+|++..++
T Consensus 125 ~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~-~~~~~~~~~~v~~~~~~~~~~~ll 202 (408)
T 4a11_B 125 KVWDTNTLQTADVFN-FEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSC-SHILQGHRQEILAVSWSPRYDYIL 202 (408)
T ss_dssp EEEETTTTEEEEEEE-CSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCC-CEEECCCCSCEEEEEECSSCTTEE
T ss_pred EEeeCCCCccceecc-CCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcce-eeeecCCCCcEEEEEECCCCCcEE
Confidence 999999999888886 7788999999984 45999999999999999998654 778888999999999999998888
Q ss_pred EEEeCCCcEEEEECCCCe-eeeEE----------------ecCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEE
Q 003236 657 CSCDNNSEIRYWSINNGS-CAGVF----------------KCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLK 719 (837)
Q Consensus 657 asgs~Dg~I~vwDl~t~~-~i~~~----------------~~~~~i~sl~~sp~g~~llags~dg~I~iwDl~s~~~~~~ 719 (837)
++++.||.|++||++++. ++..+ .+...|.+++|+|++.+|++++.|+.|++||+++++....
T Consensus 203 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~ 282 (408)
T 4a11_B 203 ATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGENTLV 282 (408)
T ss_dssp EEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCBCCC
T ss_pred EEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCCEEEEecCCCeEEEEECCCCcccee
Confidence 899999999999998765 33333 2356799999999999999999999999999998876544
Q ss_pred EcCCC------CCEEEEEEcCCCCEEEEEeCCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEE
Q 003236 720 LQGHK------NQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLE 793 (837)
Q Consensus 720 l~~h~------~~V~sl~~spdg~~LasgsDg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fspdg~~L~sgs~dg~I~ 793 (837)
+..+. .....+.......+++++.|+.|++||+.++ ..+..+..|...|.+++|+|++.+|++++.|+.|+
T Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~---~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~ 359 (408)
T 4a11_B 283 NYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSG---EQITMLKGHYKTVDCCVFQSNFQELYSGSRDCNIL 359 (408)
T ss_dssp CCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTC---CEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEE
T ss_pred ccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCC---cceeeeccCCCeEEEEEEcCCCCEEEEECCCCeEE
Confidence 43221 1222233334455666666999999999987 78888999999999999999999999999999999
Q ss_pred EEECCCCcEEEeccCCCCeeEEEEeC-CCCEEEEEECCCcEEEeC
Q 003236 794 LWNMTENKTLTLSAHDKLVSSLAAST-VNGMVASASHDKCVKIWK 837 (837)
Q Consensus 794 IwDl~s~~~~~l~~h~~~V~sla~sp-dg~~LaSgs~DG~I~IWd 837 (837)
+||+.+++.+......... ..+.+ ....+.+++.|+.+++|+
T Consensus 360 iw~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~W~ 402 (408)
T 4a11_B 360 AWVPSLYEPVPDDDETTTK--SQLNPAFEDAWSSSDEEGGTSAWS 402 (408)
T ss_dssp EEEECC---------------------------------------
T ss_pred EEeCCCCCccCCCCceEec--cccccccceeecccCccCceeecC
Confidence 9999998876332222222 22233 334566777899999995
|
| >4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-31 Score=302.28 Aligned_cols=274 Identities=15% Similarity=0.200 Sum_probs=219.8
Q ss_pred CCeEEcccCCCceEEeecCCCCCCCCccccccccCCCeeeeEEEEecCCCCCeEEEEEcC-CCCEEEEEECCCcEEEEeC
Q 003236 506 DRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSP-DGKLLATGGHDKKAVLWCT 584 (837)
Q Consensus 506 ~~~v~~Gs~D~~v~~w~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~H~~~V~sl~fSp-dg~~Lasgs~Dg~I~VWd~ 584 (837)
+.++++|+.|++|++|...... ...+..+.+|.+.|++|+|+| ++.+|++|+.||+|+|||+
T Consensus 132 ~~~lasGs~dg~i~lWd~~~~~-----------------~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~ 194 (435)
T 4e54_B 132 PSTVAVGSKGGDIMLWNFGIKD-----------------KPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDF 194 (435)
T ss_dssp TTCEEEEETTSCEEEECSSCCS-----------------CCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEEET
T ss_pred CCEEEEEeCCCEEEEEECCCCC-----------------ceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEeec
Confidence 3689999999999999654321 112344678999999999998 7899999999999999999
Q ss_pred CCCeEEEEec--cCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeEEeeccccceEEEEEcCCCCeEEEEEeCC
Q 003236 585 ESFTVKSTLE--EHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN 662 (837)
Q Consensus 585 ~t~~~~~~l~--~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~sl~fspdg~~llasgs~D 662 (837)
++........ .+...+.+++|+|++.+|++|+.||.|++||++.. .+..+.+|...|.+++|+|++..++++++.|
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~~--~~~~~~~h~~~v~~v~~~p~~~~~~~s~s~d 272 (435)
T 4e54_B 195 KGNILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDGK--ELWNLRMHKKKVTHVALNPCCDWFLATASVD 272 (435)
T ss_dssp TSCEEEEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESSSC--BCCCSBCCSSCEEEEEECTTCSSEEEEEETT
T ss_pred cCCceeEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccCcc--eeEEEecccceEEeeeecCCCceEEEEecCc
Confidence 8765544443 34456889999999999999999999999999753 3677889999999999999999899999999
Q ss_pred CcEEEEECCCCeeeeEE----ecCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEcCCCC------CEEEEEE
Q 003236 663 SEIRYWSINNGSCAGVF----KCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKN------QVHSVCW 732 (837)
Q Consensus 663 g~I~vwDl~t~~~i~~~----~~~~~i~sl~~sp~g~~llags~dg~I~iwDl~s~~~~~~l~~h~~------~V~sl~~ 732 (837)
+.|++||+++.+....+ .+...|.+++|+|++.+|++++.|+.|++||++++.+...+..|.. .+..+.|
T Consensus 273 ~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 352 (435)
T 4e54_B 273 QTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGLIPHPHRHFQHLTPIKAAW 352 (435)
T ss_dssp SBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSSSSEEEECCCCCCCCSSSCCCBCEE
T ss_pred ceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEcCCCEEEEEECCCCccceEEecccccccccceeEEEEE
Confidence 99999999887654433 3467899999999999999999999999999999887777766543 2334577
Q ss_pred cCCCCEEEEEe-------------CCeEEEEEcCCCCCceeEEEe-ecCCCceEEE-EEeCCCCEEEEEEcCCeEEEEEC
Q 003236 733 NTSGEYLASVS-------------DELVRVWSIGSGSKGECIHEL-SCTGNKFHSC-VFHPTFPSLLVIGCYETLELWNM 797 (837)
Q Consensus 733 spdg~~Lasgs-------------Dg~I~IwDl~s~~~~~~i~~~-~~~~~~I~sv-~fspdg~~L~sgs~dg~I~IwDl 797 (837)
+|++.+++++. ++.|++||+.++ ..+..+ ..|...|.++ +|+|++.+|++++ |+.|+|||+
T Consensus 353 ~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g---~~~~~l~~~~~~~v~s~~~fspdg~~lasg~-d~~i~iW~~ 428 (435)
T 4e54_B 353 HPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSG---KMMCQLYDPESSGISSLNEFNPMGDTLASAM-GYHILIWSQ 428 (435)
T ss_dssp CSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSC---CEEEEECCSSCCCCCCEEEECTTSSCEEEEC-SSEEEECCC
T ss_pred cCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCC---cEEEEEeCCCCCcEEEEEEECCCCCEEEEEc-CCcEEEEEC
Confidence 77777776653 247999999887 555554 4567778777 6999999887765 889999999
Q ss_pred CCCcE
Q 003236 798 TENKT 802 (837)
Q Consensus 798 ~s~~~ 802 (837)
++++.
T Consensus 429 ~~gk~ 433 (435)
T 4e54_B 429 QEART 433 (435)
T ss_dssp C----
T ss_pred CcCee
Confidence 98864
|
| >3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.98 E-value=1e-30 Score=287.49 Aligned_cols=250 Identities=20% Similarity=0.363 Sum_probs=214.4
Q ss_pred eEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCC-ceeEEeeccccceEEEEEcCCC-CeEEEEEeCCCcE
Q 003236 588 TVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPD-YSLRTFTGHSTTVMSLDFHPSK-EDLLCSCDNNSEI 665 (837)
Q Consensus 588 ~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~~~-~~~~~~~~h~~~V~sl~fspdg-~~llasgs~Dg~I 665 (837)
+.+..+.+|.+.|++++|+|++++|++++.||.|+|||+.... ..+..+.+|...|.+++|+++. ..+|++++.||.|
T Consensus 2 ~~~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v 81 (379)
T 3jrp_A 2 SMVVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKV 81 (379)
T ss_dssp ---CCEEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSCE
T ss_pred CccEEecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCEE
Confidence 4566788999999999999999999999999999999998432 3456788999999999998762 3477799999999
Q ss_pred EEEECCCCe--eeeEEe-cCCCeeEEEEecC--CCEEEEEEcCCeEEEEECCCC--eEEEEEcCCCCCEEEEEEcC----
Q 003236 666 RYWSINNGS--CAGVFK-CQSGATQMRFQPR--LGRILAAAIENYISILDVETQ--VCRLKLQGHKNQVHSVCWNT---- 734 (837)
Q Consensus 666 ~vwDl~t~~--~i~~~~-~~~~i~sl~~sp~--g~~llags~dg~I~iwDl~s~--~~~~~l~~h~~~V~sl~~sp---- 734 (837)
++||+.+++ .+..+. +...|.+++|+|+ +..+++++.|+.|++||++.. .....+..|...|.+++|+|
T Consensus 82 ~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 161 (379)
T 3jrp_A 82 LIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIE 161 (379)
T ss_dssp EEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECCTTCEEEEEECCCC--
T ss_pred EEEEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEecCCCCceEEEEEcCcccc
Confidence 999999987 444444 4678999999999 899999999999999999887 34556778999999999999
Q ss_pred ---------CCCEEEEEe-CCeEEEEEcCCCCCc-eeEEEeecCCCceEEEEEeCC---CCEEEEEEcCCeEEEEECCCC
Q 003236 735 ---------SGEYLASVS-DELVRVWSIGSGSKG-ECIHELSCTGNKFHSCVFHPT---FPSLLVIGCYETLELWNMTEN 800 (837)
Q Consensus 735 ---------dg~~Lasgs-Dg~I~IwDl~s~~~~-~~i~~~~~~~~~I~sv~fspd---g~~L~sgs~dg~I~IwDl~s~ 800 (837)
++.+|++++ |+.|++||++++... ..+..+..|...|.+++|+|+ +.+|++++.|+.|++||+.++
T Consensus 162 ~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~ 241 (379)
T 3jrp_A 162 EDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNE 241 (379)
T ss_dssp --------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESST
T ss_pred ccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeEEEEeCCCEEEEEeCCCC
Confidence 699999998 999999999876432 355678889999999999999 899999999999999999887
Q ss_pred c----EE--EeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 003236 801 K----TL--TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 837 (837)
Q Consensus 801 ~----~~--~l~~h~~~V~sla~spdg~~LaSgs~DG~I~IWd 837 (837)
. .. ....|...|++++|+|++++|++++.||.|+|||
T Consensus 242 ~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~ 284 (379)
T 3jrp_A 242 QGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWK 284 (379)
T ss_dssp TSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEESSSSEEEEE
T ss_pred CccceeeeeccccCCCcEEEEEEcCCCCEEEEecCCCcEEEEe
Confidence 4 22 2334889999999999999999999999999996
|
| >4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.98 E-value=2.4e-29 Score=270.27 Aligned_cols=270 Identities=19% Similarity=0.292 Sum_probs=227.6
Q ss_pred CeEEcccCCCceEEeecCCCCCCCCccccccccCCCeeeeEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCC
Q 003236 507 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES 586 (837)
Q Consensus 507 ~~v~~Gs~D~~v~~w~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~H~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t 586 (837)
+++++| .|++|++|....+ .. .....+.+|...|++++|+|++++||+|+.||+|+|||+.+
T Consensus 37 ~~lAvg-~D~tV~iWd~~tg----------------~~-~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~ 98 (318)
T 4ggc_A 37 NVLAVA-LDNSVYLWSASSG----------------DI-LQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQ 98 (318)
T ss_dssp SEEEEE-ETTEEEEEETTTC----------------CE-EEEEECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTT
T ss_pred CEEEEE-eCCEEEEEECCCC----------------CE-EEEEEecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCC
Confidence 466766 5899999965432 11 12234568899999999999999999999999999999999
Q ss_pred CeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeEEeeccccceEEEEEcCCCCeEEEEEeCCCcEE
Q 003236 587 FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIR 666 (837)
Q Consensus 587 ~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~ 666 (837)
++.+..+.+|...+.++.+ ++..|++++.++.+++|+.......+..+.+|...+.++.|.+++. ++++++.|+.|+
T Consensus 99 ~~~~~~~~~h~~~~~~~~~--~~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~s~~~d~~i~ 175 (318)
T 4ggc_A 99 QKRLRNMTSHSARVGSLSW--NSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGR-HLASGGNDNLVN 175 (318)
T ss_dssp TEEEEEEECCSSCEEEEEE--ETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSS-EEEEEETTSCEE
T ss_pred ceeEEEecCccceEEEeec--CCCEEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcCCCC-EEEEEecCccee
Confidence 9999999999999887766 4679999999999999999988888889999999999999999976 566999999999
Q ss_pred EEECCCCeeee-----EEecCCCeeEEEEecCCCEEE---EEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEcCCCCE
Q 003236 667 YWSINNGSCAG-----VFKCQSGATQMRFQPRLGRIL---AAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEY 738 (837)
Q Consensus 667 vwDl~t~~~i~-----~~~~~~~i~sl~~sp~g~~ll---ags~dg~I~iwDl~s~~~~~~l~~h~~~V~sl~~spdg~~ 738 (837)
+||+++++... .......+.++.+++.+..++ +++.++.|++||.+......... +...+..++|++++..
T Consensus 176 iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~ 254 (318)
T 4ggc_A 176 VWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVD-AHSQVCSILWSPHYKE 254 (318)
T ss_dssp EEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEEEE-CSSCEEEEEEETTTTE
T ss_pred EEECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEeccccccccccc-ceeeeeeeeecccccc
Confidence 99998765322 222356789999999776544 33457899999999887776655 6778999999999998
Q ss_pred EEEEe---CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCc
Q 003236 739 LASVS---DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENK 801 (837)
Q Consensus 739 Lasgs---Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fspdg~~L~sgs~dg~I~IwDl~s~~ 801 (837)
+++++ |+.|+|||++++ +++..+.+|...|++++|+|++.+|++++.|++|+|||+.+..
T Consensus 255 ~~~~sg~~d~~i~iwd~~~~---~~~~~l~gH~~~V~~l~~spdg~~l~S~s~D~~v~iWd~~~~d 317 (318)
T 4ggc_A 255 LISGHGFAQNQLVIWKYPTM---AKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFELD 317 (318)
T ss_dssp EEEEECTTTCCEEEEETTTC---CEEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCSCCC
T ss_pred eEEEEEcCCCEEEEEECCCC---cEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCCCC
Confidence 87654 889999999988 7888999999999999999999999999999999999987653
|
| >1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 | Back alignment and structure |
|---|
Probab=99.97 E-value=5.9e-30 Score=290.59 Aligned_cols=281 Identities=18% Similarity=0.365 Sum_probs=227.7
Q ss_pred CCeEEcccCCCceEEeecCCCCCCCCccccccccCCCeeeeEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCC
Q 003236 506 DRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTE 585 (837)
Q Consensus 506 ~~~v~~Gs~D~~v~~w~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~H~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~ 585 (837)
+.++++|+.|+.|++|..... ..+..+.+|.+.|++++| ++++|++|+.||+|++||+.
T Consensus 143 ~~~l~~g~~dg~i~iwd~~~~-------------------~~~~~~~~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~ 201 (435)
T 1p22_A 143 DQKIVSGLRDNTIKIWDKNTL-------------------ECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVN 201 (435)
T ss_dssp SSEEEEEESSSCEEEEESSSC-------------------CEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESS
T ss_pred CCEEEEEeCCCeEEEEeCCCC-------------------eEEEEEcCCCCcEEEEEE--CCCEEEEEcCCCeEEEEECC
Confidence 478899999999999965322 245678899999999999 78899999999999999999
Q ss_pred CCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCce--eEEeeccccceEEEEEcCCCCeEEEEEeCCC
Q 003236 586 SFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYS--LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNS 663 (837)
Q Consensus 586 t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~~~~~--~~~~~~h~~~V~sl~fspdg~~llasgs~Dg 663 (837)
+++.+..+.+|...|.+++|++ .+|++|+.||.|++||+.++... ...+.+|...|.+++|. + .++++++.||
T Consensus 202 ~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~--~-~~l~s~~~dg 276 (435)
T 1p22_A 202 TGEMLNTLIHHCEAVLHLRFNN--GMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD--D-KYIVSASGDR 276 (435)
T ss_dssp SCCEEEEECCCCSCEEEEECCT--TEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEE--T-TEEEEEETTS
T ss_pred CCcEEEEEcCCCCcEEEEEEcC--CEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEeC--C-CEEEEEeCCC
Confidence 9999999999999999999974 59999999999999999876542 26778899999999994 3 4777999999
Q ss_pred cEEEEECCCCeeeeEEec-CCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEE
Q 003236 664 EIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASV 742 (837)
Q Consensus 664 ~I~vwDl~t~~~i~~~~~-~~~i~sl~~sp~g~~llags~dg~I~iwDl~s~~~~~~l~~h~~~V~sl~~spdg~~Lasg 742 (837)
.|++||+++++++..+.. ...+.++.+. +..+++++.|+.|++||+++++++..+.+|...|.+++| ++.+|+++
T Consensus 277 ~i~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~--~~~~l~sg 352 (435)
T 1p22_A 277 TIKVWNTSTCEFVRTLNGHKRGIACLQYR--DRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRF--DNKRIVSG 352 (435)
T ss_dssp EEEEEETTTCCEEEEEECCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEC--CSSEEEEE
T ss_pred eEEEEECCcCcEEEEEcCCCCcEEEEEeC--CCEEEEEeCCCeEEEEECCCCCEEEEEeCCcCcEEEEEe--cCCEEEEE
Confidence 999999999999988874 5678888884 679999999999999999999999999999999999999 78899999
Q ss_pred e-CCeEEEEEcCCCCC------ceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEEEeccCCCCeeEE
Q 003236 743 S-DELVRVWSIGSGSK------GECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSAHDKLVSSL 815 (837)
Q Consensus 743 s-Dg~I~IwDl~s~~~------~~~i~~~~~~~~~I~sv~fspdg~~L~sgs~dg~I~IwDl~s~~~~~l~~h~~~V~sl 815 (837)
+ ||.|+|||+.++.. ..++..+..|...|.+++| ++.+|++++.|+.|++||+.+...........++.++
T Consensus 353 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~ 430 (435)
T 1p22_A 353 AYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQF--DEFQIVSSSHDDTILIWDFLNDPAAQAEPPRSPSRTY 430 (435)
T ss_dssp ETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEE--CSSCEEECCSSSEEEEEC-------------------
T ss_pred eCCCcEEEEECCCCCCccccccchheeeccCCCCCeEEEEe--CCCEEEEEeCCCEEEEEECCCCCCcccCCCCCCccce
Confidence 8 99999999976531 1278888899999999999 6788999999999999999887766444444555555
Q ss_pred EEe
Q 003236 816 AAS 818 (837)
Q Consensus 816 a~s 818 (837)
.|.
T Consensus 431 ~~~ 433 (435)
T 1p22_A 431 TYI 433 (435)
T ss_dssp ---
T ss_pred eee
Confidence 554
|
| >3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A | Back alignment and structure |
|---|
Probab=99.97 E-value=8e-30 Score=282.38 Aligned_cols=274 Identities=14% Similarity=0.155 Sum_probs=216.1
Q ss_pred EEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEeccCCCCeEEEEEcCCCCEE-EEEeCCCeEEEEEc
Q 003236 548 FQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRL-ATSSADRTVRVWDT 626 (837)
Q Consensus 548 ~~~l~~H~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~I~~l~fspdg~~L-atgs~Dg~I~IWDl 626 (837)
+..+..|.+.|+|++|+|||++||+|+.|+ ++|||+.+++....... ..+..++|.++++.+ ++++.|++|+|||+
T Consensus 12 ~~~~~~h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~d~~v~iWd~ 88 (355)
T 3vu4_A 12 IVPENHVSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPVAHIMSQEM--RHLSKVRMLHRTNYVAFVTGVKEVVHIWDD 88 (355)
T ss_dssp -------CCCCCEEEECTTSSEEEEECSSE-EEEEEETTEEEEEEEEC--SCCCEEEECTTSSEEEEECSSTTEEEEEET
T ss_pred ccccccCCCceEEEEECCCCCEEEEEcCCE-EEEEecCCcceeeeeec--CCeEEEEEcCCCCEEEEEECCccEEEEEEC
Confidence 445678999999999999999999998765 78999998877655432 258888999988877 56778899999999
Q ss_pred CCCCceeEEeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCC-eeeeEEecCCCeeEEEEecCCCEEEE--EEcC
Q 003236 627 ENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNG-SCAGVFKCQSGATQMRFQPRLGRILA--AAIE 703 (837)
Q Consensus 627 ~~~~~~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~-~~i~~~~~~~~i~sl~~sp~g~~lla--gs~d 703 (837)
.+++. +..+. |...|.+++|+++. ++ ++. |+.|++||+.++ +.+..+.. ....+++++ ..+++ ++.+
T Consensus 89 ~~~~~-~~~~~-~~~~v~~v~~~~~~--~~-~~~-~~~i~i~d~~~~~~~~~~~~~--~~~~~~~s~--~~la~~sg~~~ 158 (355)
T 3vu4_A 89 VKKQD-VSRIK-VDAPVKDLFLSREF--IV-VSY-GDVISVFKFGNPWKRITDDIR--FGGVCEFSN--GLLVYSNEFNL 158 (355)
T ss_dssp TTTEE-EEEEE-CSSCEEEEEECSSE--EE-EEE-TTEEEEEESSTTCCBSSCCEE--EEEEEEEET--TEEEEEESSCT
T ss_pred CCCcE-EEEEE-CCCceEEEEEcCCE--EE-EEE-cCEEEEEECCCCceeeEEecc--CCceEEEEc--cEEEEeCCCcC
Confidence 98664 55554 67799999999762 33 333 789999999988 76666655 444566666 56666 4678
Q ss_pred CeEEEEECCCCe----------------EEEEEcCCCCCEEEEEEcCCCCEEEEEe-CCe-EEEEEcCCCCCceeEEEee
Q 003236 704 NYISILDVETQV----------------CRLKLQGHKNQVHSVCWNTSGEYLASVS-DEL-VRVWSIGSGSKGECIHELS 765 (837)
Q Consensus 704 g~I~iwDl~s~~----------------~~~~l~~h~~~V~sl~~spdg~~Lasgs-Dg~-I~IwDl~s~~~~~~i~~~~ 765 (837)
|.|++||++++. ++..+.+|...|++++|+|++.+|++++ |++ |+|||++++ .++..+.
T Consensus 159 g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~---~~~~~~~ 235 (355)
T 3vu4_A 159 GQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDG---VLVREFR 235 (355)
T ss_dssp TCEEEEECCC------------------CCEEECCCSSCEEEEEECTTSSEEEEEETTCSEEEEEETTTC---CEEEEEE
T ss_pred cEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEeCCCCEEEEEECCCC---cEEEEEE
Confidence 999999999865 2678889999999999999999999999 998 999999988 6778887
Q ss_pred -c-CCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE---Ee--------------------c-cCCCCeeEEEEeC
Q 003236 766 -C-TGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL---TL--------------------S-AHDKLVSSLAAST 819 (837)
Q Consensus 766 -~-~~~~I~sv~fspdg~~L~sgs~dg~I~IwDl~s~~~~---~l--------------------~-~h~~~V~sla~sp 819 (837)
+ |...|.+++|+|++.+|++++.|+.|+|||+...... .+ . .+......++|++
T Consensus 236 ~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 315 (355)
T 3vu4_A 236 RGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQDNKRHALKGWINMKYFQSEWSLCNFKLSVDKHVRGCKIAWIS 315 (355)
T ss_dssp CTTCCSCEEEEEECTTSCEEEEEETTCEEEEEESSCCSCCCSEETTTTEECCCCCCSSCSEEEECCCCTTCCCCEEEESS
T ss_pred cCCCCCcEEEEEECCCCCEEEEEECCCEEEEEEccCCCCcccccccceeeccccccccceeEEEeccCCCCCceEEEEeC
Confidence 4 8999999999999999999999999999999765321 10 0 1122347799999
Q ss_pred CCCEEEEEECCCcEEEeC
Q 003236 820 VNGMVASASHDKCVKIWK 837 (837)
Q Consensus 820 dg~~LaSgs~DG~I~IWd 837 (837)
++++|++++.||.+++|+
T Consensus 316 d~~~l~~~~~dg~~~~~~ 333 (355)
T 3vu4_A 316 ESSLVVVWPHTRMIETFK 333 (355)
T ss_dssp SSEEEEEETTTTEEEEEE
T ss_pred CCCEEEEEeCCCeEEEEE
Confidence 999999999999999985
|
| >3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.97 E-value=5.3e-31 Score=298.22 Aligned_cols=264 Identities=15% Similarity=0.208 Sum_probs=218.7
Q ss_pred EEcCCCCEEEEEECCCcEEEEeCCCCeEEEEe-ccCCCCeEEEEEcC-CCCEEEEEeCCCeEEEEEcCC---CCce-eEE
Q 003236 562 HFSPDGKLLATGGHDKKAVLWCTESFTVKSTL-EEHTQWITDVRFSP-SLSRLATSSADRTVRVWDTEN---PDYS-LRT 635 (837)
Q Consensus 562 ~fSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l-~~h~~~I~~l~fsp-dg~~Latgs~Dg~I~IWDl~~---~~~~-~~~ 635 (837)
.|+|++..+++++ +|+ .+++.+..+ .+|.+.|++++|+| ++.+|++|+.||+|+|||+.+ +... ...
T Consensus 34 ~f~~~~~~~~~~~------~w~-~~g~~~~~~~~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~ 106 (437)
T 3gre_A 34 EFGPIQEIVRSPN------MGN-LRGKLIATLMENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSL 106 (437)
T ss_dssp GGCCCCCCCCCCC------GGG-CCCCEEEEECTTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSE
T ss_pred hcCCccccccccc------ccc-ccceEEeeeccCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccceee
Confidence 3677787777664 487 556788888 89999999999999 999999999999999999876 3311 122
Q ss_pred eeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECC---CCeeeeEEe-------------cCCCeeEEE--EecCCCEE
Q 003236 636 FTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSIN---NGSCAGVFK-------------CQSGATQMR--FQPRLGRI 697 (837)
Q Consensus 636 ~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~---t~~~i~~~~-------------~~~~i~sl~--~sp~g~~l 697 (837)
...|...|.+++|+|++. +|++++.||.|++||+. +++.+..+. ....+.++. +++++..+
T Consensus 107 ~~~h~~~v~~~~~~~~~~-~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l 185 (437)
T 3gre_A 107 TYDCSSTVTQITMIPNFD-AFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLL 185 (437)
T ss_dssp EEECSSCEEEEEECTTSS-EEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEE
T ss_pred eccCCCCEEEEEEeCCCC-EEEEEeCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEE
Confidence 225999999999999866 66799999999999995 554444332 234466666 55788999
Q ss_pred EEEEcCCeEEEEECCCCeEEEEEcC--CCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEee-cCCCceEE
Q 003236 698 LAAAIENYISILDVETQVCRLKLQG--HKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELS-CTGNKFHS 773 (837)
Q Consensus 698 lags~dg~I~iwDl~s~~~~~~l~~--h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~-~~~~~I~s 773 (837)
++++.|+.|++||+++++++..+.. |...|++++|+|++.+|++++ |+.|++||++++ .++..+. .+...|.+
T Consensus 186 ~~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~---~~~~~~~~~~~~~v~~ 262 (437)
T 3gre_A 186 VALTNLSRVIIFDIRTLERLQIIENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFN---VLIRSWSFGDHAPITH 262 (437)
T ss_dssp EEEETTSEEEEEETTTCCEEEEEECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTT---EEEEEEBCTTCEEEEE
T ss_pred EEEeCCCeEEEEeCCCCeeeEEEccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCc---cEEEEEecCCCCceEE
Confidence 9999999999999999999999988 899999999999999999999 999999999986 7777765 67778999
Q ss_pred EEEeC----CCCEEEEEEcCCeEEEEECCCCcEE-Eecc--------------------------CCCCeeEEEEeCCCC
Q 003236 774 CVFHP----TFPSLLVIGCYETLELWNMTENKTL-TLSA--------------------------HDKLVSSLAASTVNG 822 (837)
Q Consensus 774 v~fsp----dg~~L~sgs~dg~I~IwDl~s~~~~-~l~~--------------------------h~~~V~sla~spdg~ 822 (837)
++|+| ++.+|++++.|+.|++||+.+++.+ .+.+ |...|++++|+ +++
T Consensus 263 ~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~ 341 (437)
T 3gre_A 263 VEVCQFYGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-NDK 341 (437)
T ss_dssp EEECTTTCTTEEEEEEESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTE
T ss_pred EEeccccCCCccEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-Cce
Confidence 96654 5779999999999999999988866 3322 66679999999 789
Q ss_pred EEEEEECCCcEEEeC
Q 003236 823 MVASASHDKCVKIWK 837 (837)
Q Consensus 823 ~LaSgs~DG~I~IWd 837 (837)
+|++|+.||.|++||
T Consensus 342 ~l~s~~~d~~i~~wd 356 (437)
T 3gre_A 342 ILLTDEATSSIVMFS 356 (437)
T ss_dssp EEEEEGGGTEEEEEE
T ss_pred EEEecCCCCeEEEEE
Confidence 999999999999997
|
| >3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=6.4e-30 Score=289.04 Aligned_cols=278 Identities=14% Similarity=0.262 Sum_probs=223.0
Q ss_pred CCeEEcccCCCceEEeecCCCCCCCCccccccccCCCeeeeEEEEecCCC------------CCeEEEEEcCCC--CEEE
Q 003236 506 DRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPAST------------SKVESCHFSPDG--KLLA 571 (837)
Q Consensus 506 ~~~v~~Gs~D~~v~~w~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~H~------------~~V~sl~fSpdg--~~La 571 (837)
..++++|+.|+.|++|......... ......+..+..+.+|. +.|++++|+|++ .+|+
T Consensus 40 g~~la~g~~dg~v~iw~~~~~~~~~--------~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~~~~~l~ 111 (447)
T 3dw8_B 40 GELLATGDKGGRVVIFQQEQENKIQ--------SHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQKNAAQFL 111 (447)
T ss_dssp SSEEEEEETTSEEEEEEECC-------------CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCCSSSEEE
T ss_pred CCEEEEEcCCCeEEEEEecCCCCCC--------cccccceeEecccccccccccccccccccCceEEEEEcCCCCcceEE
Confidence 3789999999999999766542110 11123445677888998 899999999998 7999
Q ss_pred EEECCCcEEEEeCCCCeEE---------------------------------------EE-eccCCCCeEEEEEcCCCCE
Q 003236 572 TGGHDKKAVLWCTESFTVK---------------------------------------ST-LEEHTQWITDVRFSPSLSR 611 (837)
Q Consensus 572 sgs~Dg~I~VWd~~t~~~~---------------------------------------~~-l~~h~~~I~~l~fspdg~~ 611 (837)
+++.|++|+|||+.++... .. ..+|...|++++|+|++++
T Consensus 112 s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~ 191 (447)
T 3dw8_B 112 LSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISINSDYET 191 (447)
T ss_dssp EEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEECTTSSE
T ss_pred EeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEEEcCCCCE
Confidence 9999999999998764432 12 3689999999999999999
Q ss_pred EEEEeCCCeEEEEEcCCCCceeE-------EeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCee----eeEEe
Q 003236 612 LATSSADRTVRVWDTENPDYSLR-------TFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSC----AGVFK 680 (837)
Q Consensus 612 Latgs~Dg~I~IWDl~~~~~~~~-------~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~----i~~~~ 680 (837)
|++| .|+.|+|||+.+....+. .+.+|...|.+++|+|++..+|++++.||.|++||+++++. +..+.
T Consensus 192 l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~ 270 (447)
T 3dw8_B 192 YLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCDRHSKLFE 270 (447)
T ss_dssp EEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSSSCTTCEEEC
T ss_pred EEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCccccceeeEec
Confidence 9998 899999999985444344 35689999999999999856888999999999999999886 56666
Q ss_pred cCC-------------CeeEEEEecCCCEEEEEEcCCeEEEEECCC-CeEEEEEcCCCCC---------------EEEEE
Q 003236 681 CQS-------------GATQMRFQPRLGRILAAAIENYISILDVET-QVCRLKLQGHKNQ---------------VHSVC 731 (837)
Q Consensus 681 ~~~-------------~i~sl~~sp~g~~llags~dg~I~iwDl~s-~~~~~~l~~h~~~---------------V~sl~ 731 (837)
.+. .|.+++|+|++.+|++++. +.|++||+++ ++++..+.+|... +..++
T Consensus 271 ~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~ 349 (447)
T 3dw8_B 271 EPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPVETYQVHEYLRSKLCSLYENDCIFDKFECC 349 (447)
T ss_dssp CC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSSCSCCEESCGGGTTTHHHHHHTSGGGCCCCEE
T ss_pred cCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCccccceeeccccccccccccccccccccceEEE
Confidence 543 7999999999999999998 9999999997 7888888877532 33499
Q ss_pred EcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEee---------------------------------cCCCceEEEEEe
Q 003236 732 WNTSGEYLASVS-DELVRVWSIGSGSKGECIHELS---------------------------------CTGNKFHSCVFH 777 (837)
Q Consensus 732 ~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~---------------------------------~~~~~I~sv~fs 777 (837)
|+|++.+|++++ |+.|+|||+.++. .+. +. .....|..++|+
T Consensus 350 ~s~~~~~l~s~s~dg~v~iwd~~~~~---~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 425 (447)
T 3dw8_B 350 WNGSDSVVMTGSYNNFFRMFDRNTKR---DIT-LEASRENNKPRTVLKPRKVCASGKRKKDEISVDSLDFNKKILHTAWH 425 (447)
T ss_dssp ECTTSSEEEEECSTTEEEEEETTTCC---EEE-EECCSTTCCTTCBCCCCCEECSSCCCTTCEEGGGCCTTSCCCEEEEC
T ss_pred ECCCCCEEEEeccCCEEEEEEcCCCc---cee-eeecccccccccccCCccccccCCcccccccccccccCCceeEEEEC
Confidence 999999999999 9999999998873 221 11 223568899999
Q ss_pred CCCCEEEEEEcCCeEEEEECC
Q 003236 778 PTFPSLLVIGCYETLELWNMT 798 (837)
Q Consensus 778 pdg~~L~sgs~dg~I~IwDl~ 798 (837)
|++..|++++.++ +++|..+
T Consensus 426 p~~~~la~~~~~~-~~~~~~~ 445 (447)
T 3dw8_B 426 PKENIIAVATTNN-LYIFQDK 445 (447)
T ss_dssp SSSSEEEEECSSC-EEEEECC
T ss_pred CCCCEEEEEecce-eeeeccc
Confidence 9999988887775 7788643
|
| >2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.97 E-value=2.8e-29 Score=286.46 Aligned_cols=272 Identities=16% Similarity=0.180 Sum_probs=221.9
Q ss_pred CCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCe---EEEEecc-------------------------------------
Q 003236 556 SKVESCHFSPDGKLLATGGHDKKAVLWCTESFT---VKSTLEE------------------------------------- 595 (837)
Q Consensus 556 ~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~---~~~~l~~------------------------------------- 595 (837)
.+|.|++|++||++|+++ .++.|++||+.+++ .+..+..
T Consensus 5 ~p~~~v~~s~dg~~l~~~-~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (450)
T 2vdu_B 5 HPLQNLLTSRDGSLVFAI-IKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGDS 83 (450)
T ss_dssp CCCCEEEECSSSSEEEEE-ETTEEEEEEEETTTEEEEEEEEECCC-----------------------------------
T ss_pred ccEEEEEecCCCCEEEEE-eCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCcc
Confidence 468999999999977766 47899999999888 5555442
Q ss_pred -----------------CCCCeEEEEEcCCCCEE-EEEeCCCeEEEEEcC--CCCceeEEee--ccccceEEEEEcCCCC
Q 003236 596 -----------------HTQWITDVRFSPSLSRL-ATSSADRTVRVWDTE--NPDYSLRTFT--GHSTTVMSLDFHPSKE 653 (837)
Q Consensus 596 -----------------h~~~I~~l~fspdg~~L-atgs~Dg~I~IWDl~--~~~~~~~~~~--~h~~~V~sl~fspdg~ 653 (837)
|.+.|++++|+|++++| ++++.||.|+|||+. ++.. +..+. .|...|.+++|+|++.
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~-~~~~~~~~~~~~v~~~~~sp~~~ 162 (450)
T 2vdu_B 84 IKRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNV-LKLRKRFCFSKRPNAISIAEDDT 162 (450)
T ss_dssp ----------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSC-EEEEEEEECSSCEEEEEECTTSS
T ss_pred ccccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCce-eeeeecccCCCCceEEEEcCCCC
Confidence 33479999999999996 899999999999998 6543 55554 5678999999999976
Q ss_pred eEEEEEeCCCcEEEEECCCCeeee----EE-ecCCCeeEEEEecC---CCEEEEEEcCCeEEEEECCCCeEEEE-EcCCC
Q 003236 654 DLLCSCDNNSEIRYWSINNGSCAG----VF-KCQSGATQMRFQPR---LGRILAAAIENYISILDVETQVCRLK-LQGHK 724 (837)
Q Consensus 654 ~llasgs~Dg~I~vwDl~t~~~i~----~~-~~~~~i~sl~~sp~---g~~llags~dg~I~iwDl~s~~~~~~-l~~h~ 724 (837)
+|++++.+|.|++|++.++.... .+ .+...|.+++|+|+ +.+|++++.|+.|++||++++..+.. +.+|.
T Consensus 163 -~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~h~ 241 (450)
T 2vdu_B 163 -TVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKWLFGHK 241 (450)
T ss_dssp -EEEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEECCCCS
T ss_pred -EEEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeeeecCCC
Confidence 56688889999999998877553 33 34678999999999 88999999999999999999887777 55899
Q ss_pred CCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEee-------------------------cCCCceEEEEEeC
Q 003236 725 NQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELS-------------------------CTGNKFHSCVFHP 778 (837)
Q Consensus 725 ~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~-------------------------~~~~~I~sv~fsp 778 (837)
..|.+++|+ ++.+|++++ |+.|+|||+.++ .++..+. .....|..++|+|
T Consensus 242 ~~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~ 317 (450)
T 2vdu_B 242 HFVSSICCG-KDYLLLSAGGDDKIFAWDWKTG---KNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSK 317 (450)
T ss_dssp SCEEEEEEC-STTEEEEEESSSEEEEEETTTC---CEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECS
T ss_pred CceEEEEEC-CCCEEEEEeCCCeEEEEECCCC---cEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeC
Confidence 999999999 999999999 999999999987 4454443 2345789999999
Q ss_pred CCCEEEEEE-cCCeEEEEEC--CCC---cEE-EeccCCCCeeEEEEeCCCCEEEEEEC-------CCcEEEe
Q 003236 779 TFPSLLVIG-CYETLELWNM--TEN---KTL-TLSAHDKLVSSLAASTVNGMVASASH-------DKCVKIW 836 (837)
Q Consensus 779 dg~~L~sgs-~dg~I~IwDl--~s~---~~~-~l~~h~~~V~sla~spdg~~LaSgs~-------DG~I~IW 836 (837)
++++|++++ .++.|+|||+ ..+ +.+ .+..| ..|.+++|+|++ ++++++. +..|.||
T Consensus 318 ~~~~l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~~~~-~~v~~~~~~~~~-~~v~~~~~~~~~~~~~~i~v~ 387 (450)
T 2vdu_B 318 NLPFVAFFVEATKCIIILEMSEKQKGDLALKQIITFP-YNVISLSAHNDE-FQVTLDNKESSGVQKNFAKFI 387 (450)
T ss_dssp SSSEEEEEETTCSEEEEEEECSSSTTCEEEEEEEECS-SCEEEEEEETTE-EEEEECCTTCCSSCCCSEEEE
T ss_pred CCCEEEEEECCCCeEEEEEeccCCCCceeeccEeccC-CceEEEEecCCc-EEEEEecccCCCCCCcceEEE
Confidence 999999999 8999999999 554 344 45566 889999999954 4444432 4457777
|
| >2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A | Back alignment and structure |
|---|
Probab=99.97 E-value=3.9e-30 Score=288.52 Aligned_cols=277 Identities=16% Similarity=0.197 Sum_probs=225.9
Q ss_pred CeEEcccCCCceEEeecCCCCCCCCccccccccCCCeeeeEEEEecCCCCCeEEEEEcC-CCCEEEEEECCCcEEEEeCC
Q 003236 507 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSP-DGKLLATGGHDKKAVLWCTE 585 (837)
Q Consensus 507 ~~v~~Gs~D~~v~~w~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~H~~~V~sl~fSp-dg~~Lasgs~Dg~I~VWd~~ 585 (837)
.++++|+.|+.|.+|...... .....+..+.+|.+.|++++|+| ++.+||+|+.||+|+|||+.
T Consensus 48 ~~~~~~~~~g~i~v~~~~~~~---------------~~~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~ 112 (402)
T 2aq5_A 48 ALICEASGGGAFLVLPLGKTG---------------RVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIP 112 (402)
T ss_dssp EEEBCCSSSCCEEEEETTCCE---------------ECCTTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECC
T ss_pred EEEEEEcCCCEEEEEECccCC---------------CCCCCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEcc
Confidence 355678899999999663321 11122445779999999999999 99999999999999999999
Q ss_pred CC-------eEEEEeccCCCCeEEEEEcCCC-CEEEEEeCCCeEEEEEcCCCCceeEEe--eccccceEEEEEcCCCCeE
Q 003236 586 SF-------TVKSTLEEHTQWITDVRFSPSL-SRLATSSADRTVRVWDTENPDYSLRTF--TGHSTTVMSLDFHPSKEDL 655 (837)
Q Consensus 586 t~-------~~~~~l~~h~~~I~~l~fspdg-~~Latgs~Dg~I~IWDl~~~~~~~~~~--~~h~~~V~sl~fspdg~~l 655 (837)
++ +.+..+.+|...|.+++|+|++ .+|++++.|+.|+|||+.+++ .+..+ ..|...|.+++|+|++. +
T Consensus 113 ~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~-~ 190 (402)
T 2aq5_A 113 DGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGA-AVLTLGPDVHPDTIYSVDWSRDGA-L 190 (402)
T ss_dssp TTCCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTE-EEEEECTTTCCSCEEEEEECTTSS-C
T ss_pred CCCCccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCC-ccEEEecCCCCCceEEEEECCCCC-E
Confidence 87 5678888999999999999997 699999999999999999865 46666 78999999999999876 5
Q ss_pred EEEEeCCCcEEEEECCCCeeeeEE-ecCC--CeeEEEEecCCCEEEEE---EcCCeEEEEECCCCeE-EEEE-cCCCCCE
Q 003236 656 LCSCDNNSEIRYWSINNGSCAGVF-KCQS--GATQMRFQPRLGRILAA---AIENYISILDVETQVC-RLKL-QGHKNQV 727 (837)
Q Consensus 656 lasgs~Dg~I~vwDl~t~~~i~~~-~~~~--~i~sl~~sp~g~~llag---s~dg~I~iwDl~s~~~-~~~l-~~h~~~V 727 (837)
|++++.|+.|++||+++++.+..+ ..+. .+.++.|+|++.+++++ +.|+.|++||+++... +... ..|...|
T Consensus 191 l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v 270 (402)
T 2aq5_A 191 ICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQELDTSSGV 270 (402)
T ss_dssp EEEEETTSEEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSCSEEEECCCCSSC
T ss_pred EEEEecCCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCCceEEeccCCCce
Confidence 568889999999999999998887 3333 37999999998888888 5899999999998643 2222 2477889
Q ss_pred EEEEEcCCCCEEEE-Ee-CCeEEEEEcCCCCC-ceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE
Q 003236 728 HSVCWNTSGEYLAS-VS-DELVRVWSIGSGSK-GECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL 803 (837)
Q Consensus 728 ~sl~~spdg~~Las-gs-Dg~I~IwDl~s~~~-~~~i~~~~~~~~~I~sv~fspdg~~L~sgs~dg~I~IwDl~s~~~~ 803 (837)
.+++|+|++.+|++ ++ |+.|++||+.++.. ...+..+. +...+.+++|+|++.++++ .++.+++|++.++.+.
T Consensus 271 ~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~~~~-~~~~v~~~~~sp~~~~~~s--~~~~~~~~~l~~~~~~ 346 (402)
T 2aq5_A 271 LLPFFDPDTNIVYLCGKGDSSIRYFEITSEAPFLHYLSMFS-SKESQRGMGYMPKRGLEVN--KCEIARFYKLHERKCE 346 (402)
T ss_dssp EEEEEETTTTEEEEEETTCSCEEEEEECSSTTCEEEEEEEC-CSSCCSEEEECCGGGSCGG--GTEEEEEEEEETTEEE
T ss_pred eEEEEcCCCCEEEEEEcCCCeEEEEEecCCCcceEeecccc-cCCcccceEEeccccccee--cceeEEEEEcCCCcEE
Confidence 99999999999865 54 99999999998753 22333333 5688999999999987654 5669999999887654
|
| >2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B | Back alignment and structure |
|---|
Probab=99.97 E-value=2.1e-29 Score=286.22 Aligned_cols=245 Identities=18% Similarity=0.320 Sum_probs=210.4
Q ss_pred EEeccCCCCeEEEEEcCC-CCEEEEEeCCCeEEEEEcCCC---------CceeEEeeccccceEEEEEcCCCCeEEEEEe
Q 003236 591 STLEEHTQWITDVRFSPS-LSRLATSSADRTVRVWDTENP---------DYSLRTFTGHSTTVMSLDFHPSKEDLLCSCD 660 (837)
Q Consensus 591 ~~l~~h~~~I~~l~fspd-g~~Latgs~Dg~I~IWDl~~~---------~~~~~~~~~h~~~V~sl~fspdg~~llasgs 660 (837)
.....|.+.|++++|+|+ +.+|++++.||.|+|||+.+. ...+..+.+|...|.+++|+|++..+|++|+
T Consensus 122 ~~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~ 201 (430)
T 2xyi_A 122 EIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSAS 201 (430)
T ss_dssp EEEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEEC
T ss_pred EEEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEe
Confidence 344579999999999997 789999999999999999862 3346788899999999999999887888999
Q ss_pred CCCcEEEEECCCCee-------eeEE-ecCCCeeEEEEec-CCCEEEEEEcCCeEEEEECCCC---eEEEEEcCCCCCEE
Q 003236 661 NNSEIRYWSINNGSC-------AGVF-KCQSGATQMRFQP-RLGRILAAAIENYISILDVETQ---VCRLKLQGHKNQVH 728 (837)
Q Consensus 661 ~Dg~I~vwDl~t~~~-------i~~~-~~~~~i~sl~~sp-~g~~llags~dg~I~iwDl~s~---~~~~~l~~h~~~V~ 728 (837)
.||.|++||+..+.. ...+ .+...|.+++|+| ++..|++++.|+.|++||++++ +.+..+..|...|+
T Consensus 202 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~ 281 (430)
T 2xyi_A 202 DDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVN 281 (430)
T ss_dssp TTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEECCSSCEE
T ss_pred CCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEeecCCCCeE
Confidence 999999999987432 2233 3456799999999 6778889999999999999987 57777888999999
Q ss_pred EEEEcCCCC-EEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCC-EEEEEEcCCeEEEEECCC------
Q 003236 729 SVCWNTSGE-YLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFP-SLLVIGCYETLELWNMTE------ 799 (837)
Q Consensus 729 sl~~spdg~-~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fspdg~-~L~sgs~dg~I~IwDl~s------ 799 (837)
+++|+|++. +|++++ |+.|+|||+++.. ..+..+..|...|.+++|+|++. .|++++.|+.|+|||+..
T Consensus 282 ~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~--~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~~~ 359 (430)
T 2xyi_A 282 CLSFNPYSEFILATGSADKTVALWDLRNLK--LKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQS 359 (430)
T ss_dssp EEEECSSCTTEEEEEETTSEEEEEETTCTT--SCSEEEECCSSCEEEEEECSSCTTEEEEEETTSCCEEEEGGGTTCCCC
T ss_pred EEEeCCCCCCEEEEEeCCCeEEEEeCCCCC--CCeEEeecCCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCccccC
Confidence 999999987 677888 9999999999743 46777888999999999999995 588899999999999977
Q ss_pred --------CcEE-EeccCCCCeeEEEEeCCCC-EEEEEECCCcEEEeC
Q 003236 800 --------NKTL-TLSAHDKLVSSLAASTVNG-MVASASHDKCVKIWK 837 (837)
Q Consensus 800 --------~~~~-~l~~h~~~V~sla~spdg~-~LaSgs~DG~I~IWd 837 (837)
...+ ...+|...|++++|+|++. +|++++.||.|+||+
T Consensus 360 ~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~ 407 (430)
T 2xyi_A 360 TEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQ 407 (430)
T ss_dssp HHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEETTSEEEEEE
T ss_pred ccccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEECCCCEEEeE
Confidence 2333 6678999999999999999 999999999999996
|
| >3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.4e-30 Score=286.13 Aligned_cols=265 Identities=9% Similarity=0.026 Sum_probs=212.5
Q ss_pred EEcCCCCEEEEEECCCcEEEEeCCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcC---------CCCce
Q 003236 562 HFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTE---------NPDYS 632 (837)
Q Consensus 562 ~fSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~---------~~~~~ 632 (837)
.+.+++.+|++|+.||+|++||+.+++.+..+. ...|.++.|+|+ +++++.|++|++|+.. +....
T Consensus 43 ~~~~d~~~l~sg~~Dg~v~iwd~~~~~~~~~~~--~~~v~~~~~~~~---~~s~s~D~~i~~w~~~~~~~~~~~~~~~~~ 117 (343)
T 3lrv_A 43 SMYYDKWVCMCRCEDGALHFTQLKDSKTITTIT--TPNPRTGGEHPA---IISRGPCNRLLLLYPGNQITILDSKTNKVL 117 (343)
T ss_dssp SSSEEEEEEEEEEETTEEEEEEESSSSCEEEEE--EECCCTTCCCCS---EEEECSTTEEEEEETTTEEEEEETTTCCEE
T ss_pred hhcCCCCEEEEECCCCcEEEEECCCCcEEEEEe--cCCceeeeeCCc---eEEecCCCeEEEEEccCceEEeecCCccee
Confidence 345678899999999999999999998888776 567888999988 9999999999999766 33322
Q ss_pred eEEeeccccceEEEEEcC--CCCeEEEEEeCCCcEEEEECCCCeeeeEEec--CCCeeEEEEecCCCEEEEEEcCCeEEE
Q 003236 633 LRTFTGHSTTVMSLDFHP--SKEDLLCSCDNNSEIRYWSINNGSCAGVFKC--QSGATQMRFQPRLGRILAAAIENYISI 708 (837)
Q Consensus 633 ~~~~~~h~~~V~sl~fsp--dg~~llasgs~Dg~I~vwDl~t~~~i~~~~~--~~~i~sl~~sp~g~~llags~dg~I~i 708 (837)
.....+|...|.+++|+| ++. ++++++.||.|++||+++++++..... ...+.+++|+|++.++++|+.|+.|++
T Consensus 118 ~~~~~~~~~~v~~~~~~~~~~~~-~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~~lasg~~dg~i~i 196 (343)
T 3lrv_A 118 REIEVDSANEIIYMYGHNEVNTE-YFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLLLALYSPDGILDV 196 (343)
T ss_dssp EEEECCCSSCEEEEECCC---CC-EEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEECTTSCEEEEECTTSCEEE
T ss_pred EEeecCCCCCEEEEEcCCCCCCC-EEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEECCCCCEEEEEcCCCEEEE
Confidence 233346778999999999 765 677999999999999999998766533 446999999999999999999999999
Q ss_pred EECCCCeEE-EEEcC-CCCCEEEEEEcCCCCEEEEEeCCeEEEEEcCCCCCceeEEEeecCCCce--EEEEEeCCCCEEE
Q 003236 709 LDVETQVCR-LKLQG-HKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCTGNKF--HSCVFHPTFPSLL 784 (837)
Q Consensus 709 wDl~s~~~~-~~l~~-h~~~V~sl~~spdg~~LasgsDg~I~IwDl~s~~~~~~i~~~~~~~~~I--~sv~fspdg~~L~ 784 (837)
||+++++.+ ..+.. |...|++++|+|++.+|++++|+.|+|||+++......+..+..+...+ .+++|+|++.+|+
T Consensus 197 wd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~ 276 (343)
T 3lrv_A 197 YNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVECDQTVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDIDDSGKNMI 276 (343)
T ss_dssp EESSCTTSCCEECCCCTTSCEEEEEECTTSSEEEEEESSBEEEEETTSSTTCBSSCCCBC-----CCEEEEECTTSSEEE
T ss_pred EECCCCCCCccEEeccCCCCEEEEEEeCCCCEEEEEeCCeEEEEEcCCCCcceeecccccccccccceEEEECCCCCEEE
Confidence 999999877 77887 9999999999999999999997799999999875433333322233333 4699999999999
Q ss_pred EEEc-CCeEEEEECCCCcEE-EeccCCCCeeEEEEeC---CCCEEEEEECCCcEEEe
Q 003236 785 VIGC-YETLELWNMTENKTL-TLSAHDKLVSSLAAST---VNGMVASASHDKCVKIW 836 (837)
Q Consensus 785 sgs~-dg~I~IwDl~s~~~~-~l~~h~~~V~sla~sp---dg~~LaSgs~DG~I~IW 836 (837)
+++. |+.|+||++...... .. .++..++|.+ +...|++++.||.+.++
T Consensus 277 ~~s~~d~~i~v~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~ 329 (343)
T 3lrv_A 277 AYSNESNSLTIYKFDKKTKNWTK----DEESALCLQSDTADFTDMDVVCGDGGIAAI 329 (343)
T ss_dssp EEETTTTEEEEEEECTTTCSEEE----EEEEECCC----CCCCEEEEEEETTEEEEE
T ss_pred EecCCCCcEEEEEEcccccceEe----cCceeEecCccccccceeEEEecCCceEEE
Confidence 9998 999999998665432 22 5677788887 77888888888888775
|
| >4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A | Back alignment and structure |
|---|
Probab=99.97 E-value=3.4e-29 Score=278.66 Aligned_cols=277 Identities=12% Similarity=0.128 Sum_probs=210.4
Q ss_pred CCeEEcccCCC-------ceEEeecCCCCCCCCccccccccCCCeeeeEEEEecCCCCCeEEEEEcCCCCEEEEEE----
Q 003236 506 DRFVDDGSLDD-------NVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGG---- 574 (837)
Q Consensus 506 ~~~v~~Gs~D~-------~v~~w~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~H~~~V~sl~fSpdg~~Lasgs---- 574 (837)
..++++|+.|. .|++|......... .. .........+.+|...|.+++++ +..+++|.
T Consensus 26 g~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~--~~-------~~~~~~~~~l~~~~~~v~s~~~~--~~~~~~g~~~~~ 94 (365)
T 4h5i_A 26 DTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTE--KE-------QFHILSEFALEDNDDSPTAIDAS--KGIILVGCNENS 94 (365)
T ss_dssp TEEEEEEECCSSSSSCCEEEEEEEECTTSSSH--HH-------HEEEEEEEECCTTSCCCCEEEEE--TTEEEEECCCCH
T ss_pred CcEEEEECCCccccCCCCEEEEEEEcCCCcce--ee-------eeeeeeEEEccCCCCceEEEEeC--CCEEEEEECCCc
Confidence 36788876543 48888665432110 00 01112234578899999998775 55777664
Q ss_pred -------CCCcEEEEeCCCCeE----EEEe-----ccCCCCeEEEEEcCCCCEEEEEe--CCCeEEEEEcCCCCceeEEe
Q 003236 575 -------HDKKAVLWCTESFTV----KSTL-----EEHTQWITDVRFSPSLSRLATSS--ADRTVRVWDTENPDYSLRTF 636 (837)
Q Consensus 575 -------~Dg~I~VWd~~t~~~----~~~l-----~~h~~~I~~l~fspdg~~Latgs--~Dg~I~IWDl~~~~~~~~~~ 636 (837)
.|+.|++|++.+... .... ..+...+.+++|+|||++|++++ .|++|+|||+.+... +..+
T Consensus 95 ~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~~-~~~~ 173 (365)
T 4h5i_A 95 TKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREGTVAAIASSKVPAIMRIIDPSDLTE-KFEI 173 (365)
T ss_dssp HHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTSSCEEEEESCSSCEEEEEETTTTEE-EEEE
T ss_pred cEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCCCEEEEEECCCCCEEEEeECCCCcE-EEEe
Confidence 467899998765321 1111 23456799999999999987554 689999999998664 4444
Q ss_pred eccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeeEEe---cCCCeeEEEEecCCCEEEEEEcCC----eEEEE
Q 003236 637 TGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK---CQSGATQMRFQPRLGRILAAAIEN----YISIL 709 (837)
Q Consensus 637 ~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~---~~~~i~sl~~sp~g~~llags~dg----~I~iw 709 (837)
.|...|.+++|+|++. ++++++ ++.+++|+..++..+.... +...+.+++|+|++..+++++.++ .+.+|
T Consensus 174 -~~~~~V~~v~fspdg~-~l~s~s-~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~ 250 (365)
T 4h5i_A 174 -ETRGEVKDLHFSTDGK-VVAYIT-GSSLEVISTVTGSCIARKTDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKI 250 (365)
T ss_dssp -ECSSCCCEEEECTTSS-EEEEEC-SSCEEEEETTTCCEEEEECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEE
T ss_pred -CCCCceEEEEEccCCc-eEEecc-ceeEEEEEeccCcceeeeecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeec
Confidence 4778899999999987 555776 5567788887777665433 244589999999999999999887 68889
Q ss_pred ECCCCeE----EEEEcCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEe-ecCCCceEEEEEeCCCCEE
Q 003236 710 DVETQVC----RLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHEL-SCTGNKFHSCVFHPTFPSL 783 (837)
Q Consensus 710 Dl~s~~~----~~~l~~h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~-~~~~~~I~sv~fspdg~~L 783 (837)
|+..... ...+.+|...|++++|+|||++|++|+ |+.|+|||+.++ +++..+ .+|...|++++|+||+++|
T Consensus 251 ~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~---~~~~~~~~gH~~~V~~v~fSpdg~~l 327 (365)
T 4h5i_A 251 SIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLASNDNSIALVKLKDL---SMSKIFKQAHSFAITEVTISPDSTYV 327 (365)
T ss_dssp EEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEETTSCEEEEETTTT---EEEEEETTSSSSCEEEEEECTTSCEE
T ss_pred ccccceecceeeeeecCCCCCeEeEEECCCCCceEEEcCCCEEEEEECCCC---cEEEEecCcccCCEEEEEECCCCCEE
Confidence 9876643 456778999999999999999999999 999999999987 777764 6899999999999999999
Q ss_pred EEEEcCCeEEEEECCCC
Q 003236 784 LVIGCYETLELWNMTEN 800 (837)
Q Consensus 784 ~sgs~dg~I~IwDl~s~ 800 (837)
++++.|++|+|||+...
T Consensus 328 aS~S~D~tvrvw~ip~~ 344 (365)
T 4h5i_A 328 ASVSAANTIHIIKLPLN 344 (365)
T ss_dssp EEEETTSEEEEEECCTT
T ss_pred EEEeCCCeEEEEEcCCC
Confidence 99999999999999653
|
| >1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3 | Back alignment and structure |
|---|
Probab=99.97 E-value=8.4e-28 Score=267.26 Aligned_cols=275 Identities=14% Similarity=0.153 Sum_probs=226.6
Q ss_pred CeEEcccCCCceEEeecCCCCCCCCccccccccCCCeeeeEEEEecCCCCCeEEEEEcCCCCEE-EEEECCCcEEEEeCC
Q 003236 507 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLL-ATGGHDKKAVLWCTE 585 (837)
Q Consensus 507 ~~v~~Gs~D~~v~~w~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~H~~~V~sl~fSpdg~~L-asgs~Dg~I~VWd~~ 585 (837)
.++++++.|+.|++|..... ..+..+..|. .+.+++|+|++++| ++++.|+.|++||+.
T Consensus 3 ~l~vs~~~d~~v~v~d~~~~-------------------~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~ 62 (391)
T 1l0q_A 3 FAYIANSESDNISVIDVTSN-------------------KVTATIPVGS-NPMGAVISPDGTKVYVANAHSNDVSIIDTA 62 (391)
T ss_dssp EEEEEETTTTEEEEEETTTT-------------------EEEEEEECSS-SEEEEEECTTSSEEEEEEGGGTEEEEEETT
T ss_pred EEEEEcCCCCEEEEEECCCC-------------------eEEEEeecCC-CcceEEECCCCCEEEEECCCCCeEEEEECC
Confidence 46788899999999965332 2344555665 48999999999976 667789999999999
Q ss_pred CCeEEEEeccCCCCeEEEEEcCCCCEEEEEe-CCCeEEEEEcCCCCceeEEeeccccceEEEEEcCCCCeEEEEEeCCCc
Q 003236 586 SFTVKSTLEEHTQWITDVRFSPSLSRLATSS-ADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSE 664 (837)
Q Consensus 586 t~~~~~~l~~h~~~I~~l~fspdg~~Latgs-~Dg~I~IWDl~~~~~~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~ 664 (837)
+++.+..+..+. .|.+++|+|++++|++++ .|+.|++||+.+++. +..+.. ...+.+++|+|++..++++++.++.
T Consensus 63 ~~~~~~~~~~~~-~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~-~~~~~~-~~~~~~~~~s~dg~~l~~~~~~~~~ 139 (391)
T 1l0q_A 63 TNNVIATVPAGS-SPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTV-AGTVKT-GKSPLGLALSPDGKKLYVTNNGDKT 139 (391)
T ss_dssp TTEEEEEEECSS-SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEE-EEEEEC-SSSEEEEEECTTSSEEEEEETTTTE
T ss_pred CCeEEEEEECCC-CccceEECCCCCEEEEEECCCCEEEEEECCCCeE-EEEEeC-CCCcceEEECCCCCEEEEEeCCCCE
Confidence 999998887655 899999999999886554 679999999998653 445543 4578999999999888789999999
Q ss_pred EEEEECCCCeeeeEEecCCCeeEEEEecCCCEEE-EEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEe
Q 003236 665 IRYWSINNGSCAGVFKCQSGATQMRFQPRLGRIL-AAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS 743 (837)
Q Consensus 665 I~vwDl~t~~~i~~~~~~~~i~sl~~sp~g~~ll-ags~dg~I~iwDl~s~~~~~~l~~h~~~V~sl~~spdg~~Lasgs 743 (837)
|++||+.+++.+..+..+..+.+++|+|+++.++ +++.++.|++||+++++.+..+. +...+.+++|+|++++|++++
T Consensus 140 v~~~d~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~-~~~~~~~~~~~~~g~~l~~~~ 218 (391)
T 1l0q_A 140 VSVINTVTKAVINTVSVGRSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVK-VEAAPSGIAVNPEGTKAYVTN 218 (391)
T ss_dssp EEEEETTTTEEEEEEECCSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE-CSSEEEEEEECTTSSEEEEEE
T ss_pred EEEEECCCCcEEEEEecCCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCeEEEEEe-cCCCccceEECCCCCEEEEEe
Confidence 9999999999999998888899999999999885 55567999999999998887776 566899999999999888775
Q ss_pred ----CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEE-EEEcCCeEEEEECCCCcEE-EeccCC
Q 003236 744 ----DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLL-VIGCYETLELWNMTENKTL-TLSAHD 809 (837)
Q Consensus 744 ----Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fspdg~~L~-sgs~dg~I~IwDl~s~~~~-~l~~h~ 809 (837)
++.|++||+.++ ..+..+..+ ..+.+++|+|++++|+ +++.|+.|++||+.+++.+ .+..|.
T Consensus 219 ~~~~~~~v~~~d~~~~---~~~~~~~~~-~~~~~~~~s~dg~~l~~s~~~d~~v~v~d~~~~~~~~~~~~~~ 286 (391)
T 1l0q_A 219 VDKYFNTVSMIDTGTN---KITARIPVG-PDPAGIAVTPDGKKVYVALSFXNTVSVIDTATNTITATMAVGK 286 (391)
T ss_dssp ECSSCCEEEEEETTTT---EEEEEEECC-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSS
T ss_pred cCcCCCcEEEEECCCC---eEEEEEecC-CCccEEEEccCCCEEEEEcCCCCEEEEEECCCCcEEEEEECCc
Confidence 689999999887 566666654 4578999999999885 5567889999999999877 444443
|
| >1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3 | Back alignment and structure |
|---|
Probab=99.97 E-value=3.6e-28 Score=270.19 Aligned_cols=262 Identities=11% Similarity=0.122 Sum_probs=223.1
Q ss_pred CEEEEEECCCcEEEEeCCCCeEEEEeccCCCCeEEEEEcCCCCEE-EEEeCCCeEEEEEcCCCCceeEEeeccccceEEE
Q 003236 568 KLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRL-ATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSL 646 (837)
Q Consensus 568 ~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~I~~l~fspdg~~L-atgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~sl 646 (837)
.++++++.|+.|++||+.+++.+..+..|. .+.+++|+|++++| ++++.|+.|++||+.+++. +..+..+. .+.++
T Consensus 3 ~l~vs~~~d~~v~v~d~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~-~~~~~~~~-~v~~~ 79 (391)
T 1l0q_A 3 FAYIANSESDNISVIDVTSNKVTATIPVGS-NPMGAVISPDGTKVYVANAHSNDVSIIDTATNNV-IATVPAGS-SPQGV 79 (391)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEEECSS-SEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEE-EEEEECSS-SEEEE
T ss_pred EEEEEcCCCCEEEEEECCCCeEEEEeecCC-CcceEEECCCCCEEEEECCCCCeEEEEECCCCeE-EEEEECCC-Cccce
Confidence 467888999999999999999999988775 58999999999977 6677899999999988664 55555444 89999
Q ss_pred EEcCCCCeEEEEEeCCCcEEEEECCCCeeeeEEecCCCeeEEEEecCCCEE-EEEEcCCeEEEEECCCCeEEEEEcCCCC
Q 003236 647 DFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRI-LAAAIENYISILDVETQVCRLKLQGHKN 725 (837)
Q Consensus 647 ~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~~~~i~sl~~sp~g~~l-lags~dg~I~iwDl~s~~~~~~l~~h~~ 725 (837)
+|+|++..++++++.++.|++||+.+++.+..+..+..+.+++|+|+++.+ ++++.++.|++||+++++.+..+..+ .
T Consensus 80 ~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~-~ 158 (391)
T 1l0q_A 80 AVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVG-R 158 (391)
T ss_dssp EECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECC-S
T ss_pred EECCCCCEEEEEECCCCEEEEEECCCCeEEEEEeCCCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEecC-C
Confidence 999999988888888899999999999999999888899999999999988 45666899999999999988888765 5
Q ss_pred CEEEEEEcCCCCEEE-EEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEE---cCCeEEEEECCCC
Q 003236 726 QVHSVCWNTSGEYLA-SVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIG---CYETLELWNMTEN 800 (837)
Q Consensus 726 ~V~sl~~spdg~~La-sgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fspdg~~L~sgs---~dg~I~IwDl~s~ 800 (837)
.+.+++|+|++++|+ ++. ++.|++||++++ .++..+. +...+.+++|+|++.+|++++ .++.|++||+.++
T Consensus 159 ~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~---~~~~~~~-~~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~ 234 (391)
T 1l0q_A 159 SPKGIAVTPDGTKVYVANFDSMSISVIDTVTN---SVIDTVK-VEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTN 234 (391)
T ss_dssp SEEEEEECTTSSEEEEEETTTTEEEEEETTTT---EEEEEEE-CSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTT
T ss_pred CcceEEECCCCCEEEEEeCCCCEEEEEECCCC---eEEEEEe-cCCCccceEECCCCCEEEEEecCcCCCcEEEEECCCC
Confidence 679999999999885 455 889999999887 5555554 456789999999999999998 5889999999999
Q ss_pred cEEEeccCCCCeeEEEEeCCCCEE-EEEECCCcEEEeC
Q 003236 801 KTLTLSAHDKLVSSLAASTVNGMV-ASASHDKCVKIWK 837 (837)
Q Consensus 801 ~~~~l~~h~~~V~sla~spdg~~L-aSgs~DG~I~IWd 837 (837)
+.+........+.+++|+|++++| ++++.|+.|++||
T Consensus 235 ~~~~~~~~~~~~~~~~~s~dg~~l~~s~~~d~~v~v~d 272 (391)
T 1l0q_A 235 KITARIPVGPDPAGIAVTPDGKKVYVALSFXNTVSVID 272 (391)
T ss_dssp EEEEEEECCSSEEEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred eEEEEEecCCCccEEEEccCCCEEEEEcCCCCEEEEEE
Confidence 887444444568999999999877 6778899999996
|
| >2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.2e-30 Score=304.26 Aligned_cols=256 Identities=9% Similarity=0.051 Sum_probs=199.0
Q ss_pred cCCCCEEEEEECCCcEEEEeCCCCeE----EEEeccCCCCeEEEEEcCC------CCEEEEEeCCCeEEEEEcCCCCc--
Q 003236 564 SPDGKLLATGGHDKKAVLWCTESFTV----KSTLEEHTQWITDVRFSPS------LSRLATSSADRTVRVWDTENPDY-- 631 (837)
Q Consensus 564 Spdg~~Lasgs~Dg~I~VWd~~t~~~----~~~l~~h~~~I~~l~fspd------g~~Latgs~Dg~I~IWDl~~~~~-- 631 (837)
+|++++|++++.|++|+|||+.+++. ..++..|.+.|.+|+|+|+ +.+||+++.||+|+|||+.++..
T Consensus 170 ~~~~~~laS~s~D~tI~iWd~~~~~~~~~~~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~ 249 (524)
T 2j04_B 170 NEHLEMFDKEKHSSCIQIFKMNTSTLHCVKVQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDV 249 (524)
T ss_dssp ------------CEEEEEEEEETTTCCEEEEEEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSS
T ss_pred chhhhhhccCCCCceEEEEEccCCCCCceEEEEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCcccc
Confidence 34444555567889999999977653 2446678899999999996 57999999999999999986542
Q ss_pred --------eeEEeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCe-eeeEEe-cCCCeeEE--EEecCC-CEEE
Q 003236 632 --------SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS-CAGVFK-CQSGATQM--RFQPRL-GRIL 698 (837)
Q Consensus 632 --------~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~-~i~~~~-~~~~i~sl--~~sp~g-~~ll 698 (837)
+...+.+|...|++++|++++ .|++|+.||+|++||++++. +...+. +...|.++ .|++++ ..|+
T Consensus 250 ~~~~~~~~p~~~l~~h~~~v~sv~~s~~~--~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~la 327 (524)
T 2j04_B 250 HVFKMCEKPSLTLSLADSLITTFDFLSPT--TVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVS 327 (524)
T ss_dssp SEEECCCSCSEEECCTTTCEEEEEESSSS--EEEEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEE
T ss_pred ccceeecCceEEEEcCCCCEEEEEecCCC--eEEEEeCCCEEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEE
Confidence 134678899999999999863 68899999999999999764 334444 46779998 567777 7899
Q ss_pred EEEcCCeEEEEECCCCeEEEEEcCCCC--CEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEE
Q 003236 699 AAAIENYISILDVETQVCRLKLQGHKN--QVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCV 775 (837)
Q Consensus 699 ags~dg~I~iwDl~s~~~~~~l~~h~~--~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~ 775 (837)
+++.|++|+|||+++++++..+.+|.. .|.+++|+|++..|++++ |++|++||++++ .++..+.+|...|.+++
T Consensus 328 S~S~D~tvklWD~~~~~~~~~~~~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~---~~~~~l~gH~~~V~sva 404 (524)
T 2j04_B 328 TVAVDGYFYIFNPKDIATTKTTVSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAA---FAVHPLVSRETTITAIG 404 (524)
T ss_dssp EEETTSEEEEECGGGHHHHCEEEEECSCCSCCCEEEETTTTEEEEECSSSEEEEEETTCT---TCCEEEEECSSCEEEEE
T ss_pred EeccCCeEEEEECCCCCcccccccccccCcccceEeCCCcCeEEEeCCCCcEEEEECccc---ccceeeecCCCceEEEE
Confidence 999999999999998876666666653 588999999999999888 889999999987 56667788999999999
Q ss_pred EeCCCCEEEEEEcCCeEEEEECCCCcEEEec-----cCCCCeeEEEEeCCCCEE
Q 003236 776 FHPTFPSLLVIGCYETLELWNMTENKTLTLS-----AHDKLVSSLAASTVNGMV 824 (837)
Q Consensus 776 fspdg~~L~sgs~dg~I~IwDl~s~~~~~l~-----~h~~~V~sla~spdg~~L 824 (837)
|+|++++|++|+.|++|++||+..+...... .+...|++++|+|+++.+
T Consensus 405 ~Sp~g~~l~Sgs~Dgtv~lwd~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~~ 458 (524)
T 2j04_B 405 VSRLHPMVLAGSADGSLIITNAARRLLHGIKNSSATQKSLRLWKWDYSIKDDKY 458 (524)
T ss_dssp CCSSCCBCEEEETTTEEECCBSCSSTTTCC------CCCCEEEECBCCSSSCEE
T ss_pred eCCCCCeEEEEECCCEEEEEechHhhccccccCccceeeeEEEEeccCCCCCeE
Confidence 9999999999999999999998664221111 112257899999999855
|
| >1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A | Back alignment and structure |
|---|
Probab=99.97 E-value=7.1e-29 Score=269.74 Aligned_cols=263 Identities=13% Similarity=0.122 Sum_probs=222.6
Q ss_pred CCeEEcccCCCceEEeecCCCCCCCCccccccccCCCeeeeEEEEecCCCCCeEEEEEcCCCC-EEEEEECCCcEEEEeC
Q 003236 506 DRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGK-LLATGGHDKKAVLWCT 584 (837)
Q Consensus 506 ~~~v~~Gs~D~~v~~w~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~H~~~V~sl~fSpdg~-~Lasgs~Dg~I~VWd~ 584 (837)
..++++|+.|+.|++|..... ........+.+|...|++++|+|+++ +|++|+.||.|++||+
T Consensus 23 ~~~l~~~~~d~~v~iw~~~~~----------------~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~ 86 (342)
T 1yfq_A 23 KSLLLITSWDGSLTVYKFDIQ----------------AKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDL 86 (342)
T ss_dssp GTEEEEEETTSEEEEEEEETT----------------TTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEECS
T ss_pred CCEEEEEcCCCeEEEEEeCCC----------------CccccceeeeecCCceEEEEECCCCCcEEEEEcCCCeEEEEEe
Confidence 368899999999999965432 11122344558999999999999999 9999999999999999
Q ss_pred -CCCeEEEEecc--CCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCC---------CCceeEEeeccccceEEEEEcCCC
Q 003236 585 -ESFTVKSTLEE--HTQWITDVRFSPSLSRLATSSADRTVRVWDTEN---------PDYSLRTFTGHSTTVMSLDFHPSK 652 (837)
Q Consensus 585 -~t~~~~~~l~~--h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~---------~~~~~~~~~~h~~~V~sl~fspdg 652 (837)
.+++. ..+.. |...|.+++|+| +.+|++++.|+.|++||+.+ .. ++..+. |...|.+++|++++
T Consensus 87 ~~~~~~-~~~~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~~-~~~~v~~~~~~~~~ 162 (342)
T 1yfq_A 87 IGSPSF-QALTNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNL-NSNNTK-VKNKIFTMDTNSSR 162 (342)
T ss_dssp SSSSSE-EECBSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEEEEES-CSSSSS-SCCCEEEEEECSSE
T ss_pred ccCCce-EeccccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEcccccccccccccCC-eeeEEe-eCCceEEEEecCCc
Confidence 87765 67778 999999999999 99999999999999999986 43 244444 88999999999875
Q ss_pred CeEEEEEeCCCcEEEEECCC-Ceee---eEEecCCCeeEEEEec-CCCEEEEEEcCCeEEEEECCCC------eEEEEEc
Q 003236 653 EDLLCSCDNNSEIRYWSINN-GSCA---GVFKCQSGATQMRFQP-RLGRILAAAIENYISILDVETQ------VCRLKLQ 721 (837)
Q Consensus 653 ~~llasgs~Dg~I~vwDl~t-~~~i---~~~~~~~~i~sl~~sp-~g~~llags~dg~I~iwDl~s~------~~~~~l~ 721 (837)
+++++.|+.|++||+++ +... ....+...+.+++|+| ++..+++++.|+.|++||++.. .....+.
T Consensus 163 ---l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~ 239 (342)
T 1yfq_A 163 ---LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFR 239 (342)
T ss_dssp ---EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEE
T ss_pred ---EEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCcccccccceeee
Confidence 67888999999999998 5432 2223466899999999 9999999999999999999876 7777788
Q ss_pred CCCC---------CEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecC-CCceEEEEEeCCCCEEEEEEcCC
Q 003236 722 GHKN---------QVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCT-GNKFHSCVFHPTFPSLLVIGCYE 790 (837)
Q Consensus 722 ~h~~---------~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~-~~~I~sv~fspdg~~L~sgs~dg 790 (837)
.|.. .|.+++|+|++.+|++++ ||.|++||+.++ ..+..+..| ...|.+++ |++.+|++++.|+
T Consensus 240 ~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~---~~~~~~~~~h~~~v~~~~--~~~~~l~s~s~Dg 314 (342)
T 1yfq_A 240 CHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTR---KKIKNFAKFNEDSVVKIA--CSDNILCLATSDD 314 (342)
T ss_dssp CCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTT---EEEEECCCCSSSEEEEEE--ECSSEEEEEEECT
T ss_pred cccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccH---hHhhhhhcccCCCceEec--CCCCeEEEEecCC
Confidence 7765 999999999999999998 999999999987 778888888 99999999 9999999999999
Q ss_pred e-EEEEE
Q 003236 791 T-LELWN 796 (837)
Q Consensus 791 ~-I~IwD 796 (837)
. .+.|.
T Consensus 315 ~~~~~~~ 321 (342)
T 1yfq_A 315 TFKTNAA 321 (342)
T ss_dssp HHHHCSS
T ss_pred ccccccc
Confidence 8 44444
|
| >2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.97 E-value=6e-30 Score=294.11 Aligned_cols=262 Identities=9% Similarity=0.078 Sum_probs=212.4
Q ss_pred CCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCce
Q 003236 553 ASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYS 632 (837)
Q Consensus 553 ~H~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~~~~~ 632 (837)
.-...|.+|+|+|||+++|+++.|++|+ |...++ .+.+|...|.+++|+|+| .++.+.+|+.....
T Consensus 13 ~~~~~v~sv~~SpDG~~iASas~D~TV~--d~~~~~---~l~gh~~~v~~V~FsPdg-------~~~~~~~~~~~~~~-- 78 (588)
T 2j04_A 13 EFEDWKNNLTWARDGTLYLTTFPDISIG--QPKYAK---DINCNSKNLFHVKEFPLE-------FENKLDFELAQQNG-- 78 (588)
T ss_dssp CCSSSSCCEEECTTSCEEEECSSSEEEE--EECCCS---CCSSBGGGTEEEEEECCC-------CCCTTTTSCCCSSC--
T ss_pred HhhccEEEEEECCCCCEEEEEcCCceee--cccccc---eecCCCccEEEEEECCCC-------CcceEEEEeCCCce--
Confidence 4456799999999999999999999999 755554 447999999999999998 45555555543211
Q ss_pred eEEeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeeEEecCC-----CeeEEEEecCCCEEEEEEcCCeEE
Q 003236 633 LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQS-----GATQMRFQPRLGRILAAAIENYIS 707 (837)
Q Consensus 633 ~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~~~-----~i~sl~~sp~g~~llags~dg~I~ 707 (837)
.. -..|...|.+++|+|+|. .+++++.||.|++||... ++..+.++. .+.+++|+|+|.+|++|+.||.|+
T Consensus 79 ~~-~~~~~~~V~~vawSPdG~-~LAs~s~dg~V~iwd~~~--~l~~l~~~~~~~~~sv~svafSPDG~~LAsgs~DGtVk 154 (588)
T 2j04_A 79 LL-NSQPVCYPRVCKPSPIDD-WMAVLSNNGNVSVFKDNK--MLTNLDSKGNLSSRTYHCFEWNPIESSIVVGNEDGELQ 154 (588)
T ss_dssp SS-TTSCSCCEEEEEECSSSS-CEEEEETTSCEEEEETTE--EEEECCCSSCSTTTCEEEEEECSSSSCEEEEETTSEEE
T ss_pred Ee-ecCCCCcEEEEEECCCCC-EEEEEeCCCcEEEEeCCc--eeeeccCCCccccccEEEEEEcCCCCEEEEEcCCCEEE
Confidence 11 225688999999999987 566889999999999654 555555322 499999999999999999999999
Q ss_pred EEECCCCe-------EEEEE----cCCCCCEEEEEEcCCCCEEEEEeCCeEEEEEcCCCCCceeEEEe-ecCCCceEEEE
Q 003236 708 ILDVETQV-------CRLKL----QGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHEL-SCTGNKFHSCV 775 (837)
Q Consensus 708 iwDl~s~~-------~~~~l----~~h~~~V~sl~~spdg~~LasgsDg~I~IwDl~s~~~~~~i~~~-~~~~~~I~sv~ 775 (837)
+||+.++. .+.++ .+|..+|.+++|+||| +++++.|+.|++||+..+.......++ ..|...|.+++
T Consensus 155 IWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg-Laass~D~tVrlWd~~~~~~~~~~~tL~~~h~~~V~sva 233 (588)
T 2j04_A 155 FFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV-LVAALSNNSVFSMTVSASSHQPVSRMIQNASRRKITDLK 233 (588)
T ss_dssp EEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE-EEEEETTCCEEEECCCSSSSCCCEEEEECCCSSCCCCEE
T ss_pred EEECCCCccccccceeeeeeecccccccccEEEEEEcCCc-EEEEeCCCeEEEEECCCCccccceeeecccccCcEEEEE
Confidence 99999874 36666 6688899999999999 544444999999999887432234555 36778999999
Q ss_pred EeCCCCEEEEEEcCCeEEEEECCCCcEEE-eccCCCCeeEEEE--eCCCCEEEEEECCCcEEEeC
Q 003236 776 FHPTFPSLLVIGCYETLELWNMTENKTLT-LSAHDKLVSSLAA--STVNGMVASASHDKCVKIWK 837 (837)
Q Consensus 776 fspdg~~L~sgs~dg~I~IwDl~s~~~~~-l~~h~~~V~sla~--spdg~~LaSgs~DG~I~IWd 837 (837)
|+ +..|++++ ++.|++||+.+++... ..+|...|..++| +|++..|++++.||+ ++|.
T Consensus 234 Fs--g~~LASa~-~~tIkLWd~~~~~~~~~~~gh~~~V~~va~~~s~d~~~La~a~edG~-klw~ 294 (588)
T 2j04_A 234 IV--DYKVVLTC-PGYVHKIDLKNYSISSLKTGSLENFHIIPLNHEKESTILLMSNKTSY-KVLL 294 (588)
T ss_dssp EE--TTEEEEEC-SSEEEEEETTTTEEEEEECSCCSCCCEEEETTCSSCEEEEECSSCEE-EEEE
T ss_pred EE--CCEEEEEe-CCeEEEEECCCCeEEEEEcCCCceEEEEEeeeCCCCCEEEEEcCCCC-EEEe
Confidence 99 57788776 6999999999998854 4489999999999 999999999999999 9984
|
| >2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B | Back alignment and structure |
|---|
Probab=99.97 E-value=4.5e-29 Score=283.43 Aligned_cols=252 Identities=19% Similarity=0.367 Sum_probs=218.8
Q ss_pred EEecCCCCCeEEEEEcCC-CCEEEEEECCCcEEEEeCCC----------CeEEEEeccCCCCeEEEEEcCCCC-EEEEEe
Q 003236 549 QLIPASTSKVESCHFSPD-GKLLATGGHDKKAVLWCTES----------FTVKSTLEEHTQWITDVRFSPSLS-RLATSS 616 (837)
Q Consensus 549 ~~l~~H~~~V~sl~fSpd-g~~Lasgs~Dg~I~VWd~~t----------~~~~~~l~~h~~~I~~l~fspdg~-~Latgs 616 (837)
.....|.+.|++++|+|+ +.+||+++.||.|+|||+.+ ...+..+.+|...|++++|+|++. +|++|+
T Consensus 122 ~~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~ 201 (430)
T 2xyi_A 122 EIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSAS 201 (430)
T ss_dssp EEEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEEC
T ss_pred EEEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEe
Confidence 445689999999999997 77999999999999999986 677788899999999999999988 999999
Q ss_pred CCCeEEEEEcCCCCc------eeEEeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCC---eeeeEEe-cCCCee
Q 003236 617 ADRTVRVWDTENPDY------SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNG---SCAGVFK-CQSGAT 686 (837)
Q Consensus 617 ~Dg~I~IWDl~~~~~------~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~---~~i~~~~-~~~~i~ 686 (837)
.||.|++||+.+... ....+.+|...|.+++|+|++..+|++++.|+.|++||++++ +.+..+. +...|.
T Consensus 202 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~ 281 (430)
T 2xyi_A 202 DDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVN 281 (430)
T ss_dssp TTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEECCSSCEE
T ss_pred CCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEeecCCCCeE
Confidence 999999999987432 135667899999999999977789999999999999999987 4555553 467899
Q ss_pred EEEEecCCC-EEEEEEcCCeEEEEECCC-CeEEEEEcCCCCCEEEEEEcCCCC-EEEEEe-CCeEEEEEcCCCCC-----
Q 003236 687 QMRFQPRLG-RILAAAIENYISILDVET-QVCRLKLQGHKNQVHSVCWNTSGE-YLASVS-DELVRVWSIGSGSK----- 757 (837)
Q Consensus 687 sl~~sp~g~-~llags~dg~I~iwDl~s-~~~~~~l~~h~~~V~sl~~spdg~-~Lasgs-Dg~I~IwDl~s~~~----- 757 (837)
+++|+|++. .+++++.|+.|++||+++ ..++..+..|...|.+++|+|++. +|++++ |+.|+|||+.....
T Consensus 282 ~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~ 361 (430)
T 2xyi_A 282 CLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTE 361 (430)
T ss_dssp EEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSCCEEEEGGGTTCCCCHH
T ss_pred EEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeecCCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCccccCcc
Confidence 999999887 588999999999999998 567888889999999999999985 677777 99999999987321
Q ss_pred ------ceeEEEeecCCCceEEEEEeCCCC-EEEEEEcCCeEEEEECCCC
Q 003236 758 ------GECIHELSCTGNKFHSCVFHPTFP-SLLVIGCYETLELWNMTEN 800 (837)
Q Consensus 758 ------~~~i~~~~~~~~~I~sv~fspdg~-~L~sgs~dg~I~IwDl~s~ 800 (837)
...+..+..|...|.+++|+|+++ .|++++.|+.|+||++...
T Consensus 362 ~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~~~ 411 (430)
T 2xyi_A 362 DAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMAEN 411 (430)
T ss_dssp HHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECHH
T ss_pred ccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEECCCCEEEeEcccc
Confidence 256777888899999999999999 8999999999999998654
|
| >3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.97 E-value=2.9e-29 Score=305.79 Aligned_cols=251 Identities=20% Similarity=0.312 Sum_probs=214.2
Q ss_pred EEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCC--CCeEEEEeccCCCCeEEEEEcCC--CCEEEEEeCCCeEEE
Q 003236 548 FQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTE--SFTVKSTLEEHTQWITDVRFSPS--LSRLATSSADRTVRV 623 (837)
Q Consensus 548 ~~~l~~H~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~--t~~~~~~l~~h~~~I~~l~fspd--g~~Latgs~Dg~I~I 623 (837)
+.++.+|.+.|++++|+|++++|++|+.||.|+|||+. +++.+..+.+|.+.|++++|+++ +.+|++|+.||.|++
T Consensus 2 ~~~l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~v 81 (753)
T 3jro_A 2 VVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLI 81 (753)
T ss_dssp ------CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEE
T ss_pred eeecccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEE
Confidence 35678999999999999999999999999999999998 56778889999999999999988 999999999999999
Q ss_pred EEcCCCCc-eeEEeeccccceEEEEEcCC--CCeEEEEEeCCCcEEEEECCCCeee---eEEecCCCeeEEEEec-----
Q 003236 624 WDTENPDY-SLRTFTGHSTTVMSLDFHPS--KEDLLCSCDNNSEIRYWSINNGSCA---GVFKCQSGATQMRFQP----- 692 (837)
Q Consensus 624 WDl~~~~~-~~~~~~~h~~~V~sl~fspd--g~~llasgs~Dg~I~vwDl~t~~~i---~~~~~~~~i~sl~~sp----- 692 (837)
||+.++.. .+..+.+|...|.+++|+|+ +. ++++|+.||.|++||++++... ....+...|.+++|+|
T Consensus 82 wd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~-~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~ 160 (753)
T 3jro_A 82 WKEENGRWSQIAVHAVHSASVNSVQWAPHEYGP-LLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEE 160 (753)
T ss_dssp EEEETTEEEEEEEECCCSSCEEEEEECCGGGCS-EEEEEETTSEEEEEECCSSSCCCCEEEECCSSCEEEEEECCCC---
T ss_pred EECCCCcccccccccCCCCCeEEEEECCCCCCC-EEEEEeCCCcEEEEEeecCCCcceeEeecCCCceEEEEecCccccc
Confidence 99998652 46777889999999999998 55 6779999999999999887332 2233467899999999
Q ss_pred --------CCCEEEEEEcCCeEEEEECCCC----eEEEEEcCCCCCEEEEEEcCC---CCEEEEEe-CCeEEEEEcCCCC
Q 003236 693 --------RLGRILAAAIENYISILDVETQ----VCRLKLQGHKNQVHSVCWNTS---GEYLASVS-DELVRVWSIGSGS 756 (837)
Q Consensus 693 --------~g~~llags~dg~I~iwDl~s~----~~~~~l~~h~~~V~sl~~spd---g~~Lasgs-Dg~I~IwDl~s~~ 756 (837)
++..+++++.||.|++||++++ .....+.+|...|++++|+|+ +.+|++++ ||.|++||++++.
T Consensus 161 ~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~~~ 240 (753)
T 3jro_A 161 DGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQ 240 (753)
T ss_dssp ------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEESSSCEEEEEESSSS
T ss_pred ccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCCEEEEEecCCEEEEecCCCCC
Confidence 5889999999999999999876 667788899999999999999 89999999 9999999998863
Q ss_pred Cc--eeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCC
Q 003236 757 KG--ECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTE 799 (837)
Q Consensus 757 ~~--~~i~~~~~~~~~I~sv~fspdg~~L~sgs~dg~I~IwDl~s 799 (837)
.. ..+.....+...|.+++|+|++.+|++++.||.|++||+..
T Consensus 241 ~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~~~ 285 (753)
T 3jro_A 241 GPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENL 285 (753)
T ss_dssp SCCBCCBSSSSCCSSCCCCEEECTTTCCEEEECSSSCEECCBCCS
T ss_pred CcceeEEeccCCCCCceEEEEEcCCCCEEEEEcCCCEEEEEecCC
Confidence 21 12333445778899999999999999999999999999874
|
| >3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A | Back alignment and structure |
|---|
Probab=99.97 E-value=5.1e-28 Score=260.98 Aligned_cols=280 Identities=19% Similarity=0.220 Sum_probs=205.7
Q ss_pred CCeEEcccCCCceEEeecCCCCCCCCccccccccCCCeeeeEEEEecCCCCCeEEEEEcC--CCCEEEEEECCCcEEEEe
Q 003236 506 DRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSP--DGKLLATGGHDKKAVLWC 583 (837)
Q Consensus 506 ~~~v~~Gs~D~~v~~w~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~H~~~V~sl~fSp--dg~~Lasgs~Dg~I~VWd 583 (837)
..++++|+.|+.|++|...... ..+.....+.+|...|++++|+| |+.+|++|+.||.|+|||
T Consensus 23 ~~~l~~~~~dg~i~iw~~~~~~---------------~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~vwd 87 (351)
T 3f3f_A 23 GRHVATCSSDQHIKVFKLDKDT---------------SNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVKLWE 87 (351)
T ss_dssp SSEEEEEETTSEEEEEEECSSS---------------CCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEEEEE
T ss_pred CCEEEEeeCCCeEEEEECCCCC---------------CcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEEEEe
Confidence 3688999999999999665321 12345677889999999999999 699999999999999999
Q ss_pred CCCC---------eEEEEeccCCCCeEEEEEcCC--CCEEEEEeCCCeEEEEEcCCCCceeE------------Eeeccc
Q 003236 584 TESF---------TVKSTLEEHTQWITDVRFSPS--LSRLATSSADRTVRVWDTENPDYSLR------------TFTGHS 640 (837)
Q Consensus 584 ~~t~---------~~~~~l~~h~~~I~~l~fspd--g~~Latgs~Dg~I~IWDl~~~~~~~~------------~~~~h~ 640 (837)
+.++ +.+..+..|...|.+++|+|+ +.+|++++.||.|++||+.+...... ....|.
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (351)
T 3f3f_A 88 EDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPANHL 167 (351)
T ss_dssp ECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCCSSCS
T ss_pred cCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhccccccccccccccccCCcc
Confidence 9876 668888899999999999999 99999999999999999987653111 112678
Q ss_pred cceEEEEEcCC--CCeEEEEEeCCCcEEEEECCCCee--eeEEe-cCCCeeEEEEecCC----CEEEEEEcCCeEEEEEC
Q 003236 641 TTVMSLDFHPS--KEDLLCSCDNNSEIRYWSINNGSC--AGVFK-CQSGATQMRFQPRL----GRILAAAIENYISILDV 711 (837)
Q Consensus 641 ~~V~sl~fspd--g~~llasgs~Dg~I~vwDl~t~~~--i~~~~-~~~~i~sl~~sp~g----~~llags~dg~I~iwDl 711 (837)
..+.+++|+|+ ...++++++.++.+.+|+...++. +..+. +...|.+++|+|++ .+|++++.|+.|++||+
T Consensus 168 ~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~iwd~ 247 (351)
T 3f3f_A 168 QSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRIFKI 247 (351)
T ss_dssp CCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSEEEEEEETTSCEEEEEE
T ss_pred cceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcceEEEEEcCCCeEEEEeC
Confidence 89999999997 345777888999998888887765 33333 35679999999998 78999999999999999
Q ss_pred CCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEe-----CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEE
Q 003236 712 ETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-----DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVI 786 (837)
Q Consensus 712 ~s~~~~~~l~~h~~~V~sl~~spdg~~Lasgs-----Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fspdg~~L~sg 786 (837)
+.+........+...+....+.+....++.+. ...+.+|+... ...+..+..|...|++++|+|++.+|+++
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~h~~~v~~~~~s~~~~~l~s~ 324 (351)
T 3f3f_A 248 TEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQ---VELLSEHDDHNGEVWSVSWNLTGTILSSA 324 (351)
T ss_dssp EECC---------------------------------------CCSEE---EEEEEEECTTSSCEEEEEECSSSCCEEEE
T ss_pred CCCcCccccCCcccceeccCCCcccccccccccccccceeeeeccccc---ccEEEEEecccccEEEEEEcCCCCEEEEe
Confidence 98765555544444555555555555555544 22344444333 36788888999999999999999999999
Q ss_pred EcCCeEEEEECCCCcEE
Q 003236 787 GCYETLELWNMTENKTL 803 (837)
Q Consensus 787 s~dg~I~IwDl~s~~~~ 803 (837)
+.|+.|+|||+.+++.+
T Consensus 325 ~~dg~v~iw~~~~~~~~ 341 (351)
T 3f3f_A 325 GDDGKVRLWKATYSNEF 341 (351)
T ss_dssp ETTSCEEEEEECTTSCE
T ss_pred cCCCcEEEEecCcCcch
Confidence 99999999999887544
|
| >3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.4e-27 Score=260.99 Aligned_cols=286 Identities=16% Similarity=0.229 Sum_probs=229.7
Q ss_pred CCceEEEEecCCCCCcccCCCccccCCCeEEcccCCCceEEeecCCCCCCCCccccccccCCCeeeeEEEEecCCCCCeE
Q 003236 480 SSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVE 559 (837)
Q Consensus 480 ~~~s~~~~~~~~~~~~~~~~~~l~~~~~~v~~Gs~D~~v~~w~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~H~~~V~ 559 (837)
.....+.|+++.. ...++++|+.|+.|++|...... ......+.+|.+.|+
T Consensus 40 ~~v~~~~~~~~~~------------~g~~l~~~~~dg~i~iw~~~~~~-----------------~~~~~~~~~h~~~v~ 90 (368)
T 3mmy_A 40 DSIGCLSFSPPTL------------PGNFLIAGSWANDVRCWEVQDSG-----------------QTIPKAQQMHTGPVL 90 (368)
T ss_dssp SCEEEEEECCTTS------------SSEEEEEEETTSEEEEEEECTTS-----------------CEEEEEEEECSSCEE
T ss_pred CceEEEEEcCCCC------------CceEEEEECCCCcEEEEEcCCCC-----------------ceeEEEeccccCCEE
Confidence 4566777766531 13688999999999999765421 112356778999999
Q ss_pred EEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEeccCCCCeEEEEE--cCCCCEEEEEeCCCeEEEEEcCCCCceeEEee
Q 003236 560 SCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRF--SPSLSRLATSSADRTVRVWDTENPDYSLRTFT 637 (837)
Q Consensus 560 sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~I~~l~f--spdg~~Latgs~Dg~I~IWDl~~~~~~~~~~~ 637 (837)
+++|+|++++|++++.||.|++||+.+++.+. +..|...|.+++| ++++.+|++++.||.|++||+.+++. +..+.
T Consensus 91 ~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~-~~~~~ 168 (368)
T 3mmy_A 91 DVCWSDDGSKVFTASCDKTAKMWDLSSNQAIQ-IAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNP-MMVLQ 168 (368)
T ss_dssp EEEECTTSSEEEEEETTSEEEEEETTTTEEEE-EEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSC-SEEEE
T ss_pred EEEECcCCCEEEEEcCCCcEEEEEcCCCCcee-eccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcE-EEEEe
Confidence 99999999999999999999999999988776 4569999999999 89999999999999999999998664 56666
Q ss_pred ccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeeEEe---cCCCeeEEEEecCCCE----EEEEEcCCeEEEEE
Q 003236 638 GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK---CQSGATQMRFQPRLGR----ILAAAIENYISILD 710 (837)
Q Consensus 638 ~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~---~~~~i~sl~~sp~g~~----llags~dg~I~iwD 710 (837)
.+. .+.++.+.++ .+++++.++.+++|+++......... ....+.++.+.++... +++++.|+.|++||
T Consensus 169 ~~~-~~~~~~~~~~---~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~ 244 (368)
T 3mmy_A 169 LPE-RCYCADVIYP---MAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHY 244 (368)
T ss_dssp CSS-CEEEEEEETT---EEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEE
T ss_pred cCC-CceEEEecCC---eeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEe
Confidence 554 6777777743 55677779999999998765443322 2345667777665544 99999999999999
Q ss_pred CCCC---eEEEEEcCCCC------------CEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEE
Q 003236 711 VETQ---VCRLKLQGHKN------------QVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSC 774 (837)
Q Consensus 711 l~s~---~~~~~l~~h~~------------~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv 774 (837)
++.. ..+..+..|.. .|++++|+|++.+|++++ |+.|+|||+.++ .++..+..|...|.++
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~---~~~~~~~~~~~~v~~~ 321 (368)
T 3mmy_A 245 INPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDAR---TKLKTSEQLDQPISAC 321 (368)
T ss_dssp SSCSCHHHHSEEEECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTT---EEEEECCCCSSCEEEE
T ss_pred cCCCCccccceeeeeeecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCC---cEEEEecCCCCCceEE
Confidence 9987 55667777765 799999999999999998 999999999987 7888899999999999
Q ss_pred EEeCCCCEEEEEEcCCeEE---EEECCCCcEE
Q 003236 775 VFHPTFPSLLVIGCYETLE---LWNMTENKTL 803 (837)
Q Consensus 775 ~fspdg~~L~sgs~dg~I~---IwDl~s~~~~ 803 (837)
+|+|++.+|++++.|+..+ +|+.+....+
T Consensus 322 ~~s~~g~~l~~~s~d~~~~~~~~~~~~~~~~i 353 (368)
T 3mmy_A 322 CFNHNGNIFAYASSYDWSKGHEFYNPQKKNYI 353 (368)
T ss_dssp EECTTSSCEEEEECCCSTTCGGGCCTTSCCEE
T ss_pred EECCCCCeEEEEecccccccccccCCCcccee
Confidence 9999999999999988444 4444444444
|
| >2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.96 E-value=3.1e-29 Score=288.17 Aligned_cols=245 Identities=10% Similarity=0.109 Sum_probs=205.3
Q ss_pred CCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEeccCCC-----CeEEEEEcCCCCEEEEEeCCCeEEEEEcC
Q 003236 553 ASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQ-----WITDVRFSPSLSRLATSSADRTVRVWDTE 627 (837)
Q Consensus 553 ~H~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~-----~I~~l~fspdg~~Latgs~Dg~I~IWDl~ 627 (837)
.|...|.+|+|||||.+||+++.||.|+|||.+. ++..+. |.. .|.+++|+|||++||+|+.||+|+|||+.
T Consensus 83 ~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~--~l~~l~-~~~~~~~~sv~svafSPDG~~LAsgs~DGtVkIWd~~ 159 (588)
T 2j04_A 83 QPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK--MLTNLD-SKGNLSSRTYHCFEWNPIESSIVVGNEDGELQFFSIR 159 (588)
T ss_dssp SCSCCEEEEEECSSSSCEEEEETTSCEEEEETTE--EEEECC-CSSCSTTTCEEEEEECSSSSCEEEEETTSEEEEEECC
T ss_pred CCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc--eeeecc-CCCccccccEEEEEEcCCCCEEEEEcCCCEEEEEECC
Confidence 5688899999999999999999999999999654 666677 665 49999999999999999999999999999
Q ss_pred CCCc------eeEEe----eccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeee---eEEe--cCCCeeEEEEec
Q 003236 628 NPDY------SLRTF----TGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCA---GVFK--CQSGATQMRFQP 692 (837)
Q Consensus 628 ~~~~------~~~~~----~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i---~~~~--~~~~i~sl~~sp 692 (837)
++.. .+..+ .+|...|.+++|+|++ +++++.|+.|++||+..+... ..+. +...|.+++|+
T Consensus 160 ~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg---Laass~D~tVrlWd~~~~~~~~~~~tL~~~h~~~V~svaFs- 235 (588)
T 2j04_A 160 KNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV---LVAALSNNSVFSMTVSASSHQPVSRMIQNASRRKITDLKIV- 235 (588)
T ss_dssp CCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE---EEEEETTCCEEEECCCSSSSCCCEEEEECCCSSCCCCEEEE-
T ss_pred CCccccccceeeeeeecccccccccEEEEEEcCCc---EEEEeCCCeEEEEECCCCccccceeeecccccCcEEEEEEE-
Confidence 8653 35665 6778899999999997 557778999999999887742 3453 34679999999
Q ss_pred CCCEEEEEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEE--cCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCC
Q 003236 693 RLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCW--NTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGN 769 (837)
Q Consensus 693 ~g~~llags~dg~I~iwDl~s~~~~~~l~~h~~~V~sl~~--spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~ 769 (837)
+..+++++ ++.|++||+.++.......+|...|..++| +|++..|+++. ||+ ++|...
T Consensus 236 -g~~LASa~-~~tIkLWd~~~~~~~~~~~gh~~~V~~va~~~s~d~~~La~a~edG~-klw~~d---------------- 296 (588)
T 2j04_A 236 -DYKVVLTC-PGYVHKIDLKNYSISSLKTGSLENFHIIPLNHEKESTILLMSNKTSY-KVLLED---------------- 296 (588)
T ss_dssp -TTEEEEEC-SSEEEEEETTTTEEEEEECSCCSCCCEEEETTCSSCEEEEECSSCEE-EEEESS----------------
T ss_pred -CCEEEEEe-CCeEEEEECCCCeEEEEEcCCCceEEEEEeeeCCCCCEEEEEcCCCC-EEEeec----------------
Confidence 57787776 699999999998875444479999999999 99999999999 889 999875
Q ss_pred ceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEEEeccCCCCeeEEEEeCCCCEEEEEEC
Q 003236 770 KFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASH 829 (837)
Q Consensus 770 ~I~sv~fspdg~~L~sgs~dg~I~IwDl~s~~~~~l~~h~~~V~sla~spdg~~LaSgs~ 829 (837)
.+.++|++..+++. |+++++|+...+... ...+...|.+++|+|||+++|+++.
T Consensus 297 ---~~~~spd~~l~a~~--d~~v~lW~~~g~~l~-~~~~~~~I~~va~SPdG~~lA~~~~ 350 (588)
T 2j04_A 297 ---ELHVTADNIIAPYL--EKKFKKWSTIWNEFN-NYETTLVIHGISLSPDGYSIAIVYD 350 (588)
T ss_dssp ---SEEEECCCSSHHHH--HHHHHHTTTTTTSSS-SSCCEEEEEEEEECTTSSEEEEEEE
T ss_pred ---cEEECCCceEEEEc--CCEEEEEECCCCcee-eeccceEEEEEEECCCCCEEEEEEe
Confidence 15699999866664 899999998666533 3344677999999999999999874
|
| >4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A | Back alignment and structure |
|---|
Probab=99.96 E-value=1.4e-28 Score=276.21 Aligned_cols=261 Identities=15% Similarity=0.140 Sum_probs=177.4
Q ss_pred cCCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEE-----EEeccCCCCeEEEEEcC--------CCCEEEEEeCC
Q 003236 552 PASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVK-----STLEEHTQWITDVRFSP--------SLSRLATSSAD 618 (837)
Q Consensus 552 ~~H~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~~-----~~l~~h~~~I~~l~fsp--------dg~~Latgs~D 618 (837)
..|...+....+++++.+||+|+.|++|+|||+.++... ..+.+|.+.|++|+|+| |+++||+|+.|
T Consensus 86 ~~~~~~~~~~~~~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D 165 (393)
T 4gq1_A 86 NLHDGDGNVNSSPVYSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDD 165 (393)
T ss_dssp C----------CCEEEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETT
T ss_pred cccCCCcceeecCCCCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECC
Confidence 345555666666778889999999999999999887654 34678999999999998 78999999999
Q ss_pred CeEEEEEcCCCCceeEEeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeeEEecCC-CeeEEEEecCCCEE
Q 003236 619 RTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQS-GATQMRFQPRLGRI 697 (837)
Q Consensus 619 g~I~IWDl~~~~~~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~~~-~i~sl~~sp~g~~l 697 (837)
++|+|||+.+.. .+..+..|...|.+++|+|++..+|++++.|++|++||+++++......... ......+
T Consensus 166 ~tv~~Wd~~~~~-~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~------- 237 (393)
T 4gq1_A 166 CTLIIWRLTDEG-PILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLL------- 237 (393)
T ss_dssp SEEEEEEEETTE-EEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSE-------
T ss_pred CeEEEEECCCCc-eeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEE-------
Confidence 999999998765 4666777889999999999988889999999999999999887655443211 1110000
Q ss_pred EEEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEc-CCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceE---
Q 003236 698 LAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWN-TSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFH--- 772 (837)
Q Consensus 698 lags~dg~I~iwDl~s~~~~~~l~~h~~~V~sl~~s-pdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~--- 772 (837)
. ++...........+|...|.++.|+ +++..|++++ |+.+++||+..+.. ...+..+...+.
T Consensus 238 -s---------~~~~~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~---~~~l~~~~~~~~~~~ 304 (393)
T 4gq1_A 238 -T---------LNTLPLVNTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANND---YNEISDSTMKLGPKN 304 (393)
T ss_dssp -E---------EESGGGC------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC----------------------C
T ss_pred -e---------cccccceeeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCC---CceEeeecCccccEE
Confidence 1 1111111122334688899999987 7999999999 99999999987632 222222222222
Q ss_pred ---------------EEEEeC-CC-CEEEEEEcCCeEEEEECCCCcEE-EeccCCCCeeEEEEeCCCCEEEEEECCCcE
Q 003236 773 ---------------SCVFHP-TF-PSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCV 833 (837)
Q Consensus 773 ---------------sv~fsp-dg-~~L~sgs~dg~I~IwDl~s~~~~-~l~~h~~~V~sla~spdg~~LaSgs~DG~I 833 (837)
.+.|++ .+ .++++++.|+.|+|||+.+++.. ....|...|.+++|+|||++||++++||.+
T Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~~~~~~~V~svafspdG~~LA~as~~Gv~ 383 (393)
T 4gq1_A 305 LLPNVQGISLFPSLLGACPHPRYMDYFATAHSQHGLIQLINTYEKDSNSIPIQLGMPIVDFCWHQDGSHLAIATEGSVL 383 (393)
T ss_dssp CSCSEEEECSSCCSSCCEECSSCTTEEEEEETTTTEEEEEETTCTTCCEEEEECSSCEEEEEECTTSSEEEEEESSEEE
T ss_pred EccccccccccCcceeEEEccCCCCEEEEEECCCCEEEEEECCCCcEEEEecCCCCcEEEEEEcCCCCEEEEEeCCCeE
Confidence 223333 23 34566677999999999988766 667899999999999999999999988853
|
| >3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.96 E-value=2.4e-28 Score=297.72 Aligned_cols=248 Identities=21% Similarity=0.367 Sum_probs=211.1
Q ss_pred EEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCC-ceeEEeeccccceEEEEEcCCC-CeEEEEEeCCCcEEE
Q 003236 590 KSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPD-YSLRTFTGHSTTVMSLDFHPSK-EDLLCSCDNNSEIRY 667 (837)
Q Consensus 590 ~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~~~-~~~~~~~~h~~~V~sl~fspdg-~~llasgs~Dg~I~v 667 (837)
+..+.+|.+.|++++|+|++++|++|+.||.|+|||+..+. ..+..+.+|...|.+++|+++. ..++++|+.||.|++
T Consensus 2 ~~~l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~v 81 (753)
T 3jro_A 2 VVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLI 81 (753)
T ss_dssp ------CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEE
T ss_pred eeecccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEE
Confidence 34678999999999999999999999999999999998432 3467788999999999999872 347779999999999
Q ss_pred EECCCCe--eeeEEe-cCCCeeEEEEecC--CCEEEEEEcCCeEEEEECCCC--eEEEEEcCCCCCEEEEEEcC------
Q 003236 668 WSINNGS--CAGVFK-CQSGATQMRFQPR--LGRILAAAIENYISILDVETQ--VCRLKLQGHKNQVHSVCWNT------ 734 (837)
Q Consensus 668 wDl~t~~--~i~~~~-~~~~i~sl~~sp~--g~~llags~dg~I~iwDl~s~--~~~~~l~~h~~~V~sl~~sp------ 734 (837)
||+.+++ .+..+. +...|.+++|+|+ +..+++++.||.|++||++++ .....+.+|...|.+++|+|
T Consensus 82 wd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~~ 161 (753)
T 3jro_A 82 WKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEED 161 (753)
T ss_dssp EEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEECCSSCEEEEEECCCC----
T ss_pred EECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEeecCCCceEEEEecCcccccc
Confidence 9999986 444443 4678999999999 999999999999999999887 34556678999999999999
Q ss_pred -------CCCEEEEEe-CCeEEEEEcCCCCCc-eeEEEeecCCCceEEEEEeCC---CCEEEEEEcCCeEEEEECCCCc-
Q 003236 735 -------SGEYLASVS-DELVRVWSIGSGSKG-ECIHELSCTGNKFHSCVFHPT---FPSLLVIGCYETLELWNMTENK- 801 (837)
Q Consensus 735 -------dg~~Lasgs-Dg~I~IwDl~s~~~~-~~i~~~~~~~~~I~sv~fspd---g~~L~sgs~dg~I~IwDl~s~~- 801 (837)
++.+|++++ ||.|++||++++... .++..+..|...|.+++|+|+ +.+|++++.|+.|++||+.++.
T Consensus 162 ~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~~~~ 241 (753)
T 3jro_A 162 GEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQG 241 (753)
T ss_dssp -----CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEESSSCEEEEEESSSSS
T ss_pred cccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCCEEEEEecCCEEEEecCCCCCC
Confidence 588899988 999999999876432 456678889999999999999 8999999999999999998873
Q ss_pred -----EEEeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 003236 802 -----TLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 837 (837)
Q Consensus 802 -----~~~l~~h~~~V~sla~spdg~~LaSgs~DG~I~IWd 837 (837)
......|...|++++|+|++.+|++|+.||.|+|||
T Consensus 242 ~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd 282 (753)
T 3jro_A 242 PWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWK 282 (753)
T ss_dssp CCBCCBSSSSCCSSCCCCEEECTTTCCEEEECSSSCEECCB
T ss_pred cceeEEeccCCCCCceEEEEEcCCCCEEEEEcCCCEEEEEe
Confidence 224456889999999999999999999999999996
|
| >2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.96 E-value=3e-26 Score=261.45 Aligned_cols=245 Identities=10% Similarity=0.047 Sum_probs=204.0
Q ss_pred ecCCCCCeEEEEEcCCCCEE-EEEECCCcEEEEeCC--CCeEEEEec--cCCCCeEEEEEcCCCCEEEEEeCCCeEEEEE
Q 003236 551 IPASTSKVESCHFSPDGKLL-ATGGHDKKAVLWCTE--SFTVKSTLE--EHTQWITDVRFSPSLSRLATSSADRTVRVWD 625 (837)
Q Consensus 551 l~~H~~~V~sl~fSpdg~~L-asgs~Dg~I~VWd~~--t~~~~~~l~--~h~~~I~~l~fspdg~~Latgs~Dg~I~IWD 625 (837)
..+|.+.|++++|+|++++| ++|+.||.|+|||+. +++.+..+. .|...|++++|+|++++|++++.||.|++|+
T Consensus 98 ~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~g~v~~~~ 177 (450)
T 2vdu_B 98 APPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDTTVIIADKFGDVYSID 177 (450)
T ss_dssp --CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred CCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCCEEEEEeCCCcEEEEe
Confidence 45788899999999999996 899999999999999 888887775 5778999999999999999999999999999
Q ss_pred cCCCCc---eeEEeeccccceEEEEEcCC--CCeEEEEEeCCCcEEEEECCCCeeeeEEe--cCCCeeEEEEecCCCEEE
Q 003236 626 TENPDY---SLRTFTGHSTTVMSLDFHPS--KEDLLCSCDNNSEIRYWSINNGSCAGVFK--CQSGATQMRFQPRLGRIL 698 (837)
Q Consensus 626 l~~~~~---~~~~~~~h~~~V~sl~fspd--g~~llasgs~Dg~I~vwDl~t~~~i~~~~--~~~~i~sl~~sp~g~~ll 698 (837)
+.+... ....+.+|...|.+++|+|+ +..+|++++.|+.|++||+.+++++..+. +...|.+++|+ ++.+|+
T Consensus 178 ~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~s-d~~~l~ 256 (450)
T 2vdu_B 178 INSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKWLFGHKHFVSSICCG-KDYLLL 256 (450)
T ss_dssp TTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEECCCCSSCEEEEEEC-STTEEE
T ss_pred cCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeeeecCCCCceEEEEEC-CCCEEE
Confidence 987653 23367889999999999998 23477799999999999999998887643 56789999999 999999
Q ss_pred EEEcCCeEEEEECCCCeEEEEEcC-------------------------CCCCEEEEEEcCCCCEEEEEe--CCeEEEEE
Q 003236 699 AAAIENYISILDVETQVCRLKLQG-------------------------HKNQVHSVCWNTSGEYLASVS--DELVRVWS 751 (837)
Q Consensus 699 ags~dg~I~iwDl~s~~~~~~l~~-------------------------h~~~V~sl~~spdg~~Lasgs--Dg~I~IwD 751 (837)
+++.|+.|++||+++++++..+.. ....|.+++|+|++.+|++++ |+.|+||+
T Consensus 257 s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~d~~i~iw~ 336 (450)
T 2vdu_B 257 SAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPFVAFFVEATKCIIILE 336 (450)
T ss_dssp EEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSSSEEEEEETTCSEEEEEE
T ss_pred EEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCCCEEEEEECCCCeEEEEE
Confidence 999999999999999988887763 345799999999999999887 88999999
Q ss_pred c--CCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEc-------CCeEEEEECC
Q 003236 752 I--GSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGC-------YETLELWNMT 798 (837)
Q Consensus 752 l--~s~~~~~~i~~~~~~~~~I~sv~fspdg~~L~sgs~-------dg~I~IwDl~ 798 (837)
+ ..+.....+..+..+ ..+.+++|+|++ .+++.+. +..|.+|.+.
T Consensus 337 ~~~~~~~~l~~~~~~~~~-~~v~~~~~~~~~-~~v~~~~~~~~~~~~~~i~v~~~~ 390 (450)
T 2vdu_B 337 MSEKQKGDLALKQIITFP-YNVISLSAHNDE-FQVTLDNKESSGVQKNFAKFIEYN 390 (450)
T ss_dssp ECSSSTTCEEEEEEEECS-SCEEEEEEETTE-EEEEECCTTCCSSCCCSEEEEEEE
T ss_pred eccCCCCceeeccEeccC-CceEEEEecCCc-EEEEEecccCCCCCCcceEEEEEE
Confidence 9 554444667777776 889999999964 4444433 3457777653
|
| >1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=7.3e-26 Score=265.35 Aligned_cols=310 Identities=10% Similarity=0.061 Sum_probs=249.7
Q ss_pred CCCeEEcccCCCceEEeecCCCCCCCCccccccccCCCeeeeEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEeC
Q 003236 505 MDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCT 584 (837)
Q Consensus 505 ~~~~v~~Gs~D~~v~~w~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~H~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~ 584 (837)
...++++++.|++|.+|..... ..+.++..+.. +.+++|+|||++|++++.|++|.+||+
T Consensus 148 ~~~~~vs~~~d~~V~v~D~~t~-------------------~~~~~i~~g~~-~~~v~~spdg~~l~v~~~d~~V~v~D~ 207 (543)
T 1nir_A 148 PNLFSVTLRDAGQIALVDGDSK-------------------KIVKVIDTGYA-VHISRMSASGRYLLVIGRDARIDMIDL 207 (543)
T ss_dssp GGEEEEEEGGGTEEEEEETTTC-------------------CEEEEEECSTT-EEEEEECTTSCEEEEEETTSEEEEEET
T ss_pred CCEEEEEEcCCCeEEEEECCCc-------------------eEEEEEecCcc-cceEEECCCCCEEEEECCCCeEEEEEC
Confidence 3467788888999999954322 23445553333 899999999999999999999999999
Q ss_pred --CCCeEEEEeccCCCCeEEEEEcC----CCCEEEEEeC-CCeEEEEEcCCCCceeEEeec----------cc-cceEEE
Q 003236 585 --ESFTVKSTLEEHTQWITDVRFSP----SLSRLATSSA-DRTVRVWDTENPDYSLRTFTG----------HS-TTVMSL 646 (837)
Q Consensus 585 --~t~~~~~~l~~h~~~I~~l~fsp----dg~~Latgs~-Dg~I~IWDl~~~~~~~~~~~~----------h~-~~V~sl 646 (837)
.+++++.++. +...+..++|+| |+++|++++. +++|.|||..+.+. +..+.. |. ..+.++
T Consensus 208 ~~~t~~~~~~i~-~g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~-~~~i~~~g~~~~~~~~~~~~~v~~i 285 (543)
T 1nir_A 208 WAKEPTKVAEIK-IGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEP-KQIVSTRGMTVDTQTYHPEPRVAAI 285 (543)
T ss_dssp TSSSCEEEEEEE-CCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCE-EEEEECCEECSSSCCEESCCCEEEE
T ss_pred cCCCCcEEEEEe-cCCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEecccccc-ceeecccCcccCccccccCCceEEE
Confidence 8899988887 455689999999 9999999885 89999999988664 454443 22 378999
Q ss_pred EEcCCCCeEEEEEeCCCcEEEEECCCCeeee--EEecCCCeeEEEEecCCCEEEEEEc-CCeEEEEECCCCeEEEEEcC-
Q 003236 647 DFHPSKEDLLCSCDNNSEIRYWSINNGSCAG--VFKCQSGATQMRFQPRLGRILAAAI-ENYISILDVETQVCRLKLQG- 722 (837)
Q Consensus 647 ~fspdg~~llasgs~Dg~I~vwDl~t~~~i~--~~~~~~~i~sl~~sp~g~~llags~-dg~I~iwDl~s~~~~~~l~~- 722 (837)
.++|++..++++...++.|.+||+.+.+.+. .+.....+..+.|+|+++++++++. ++.|.+||+.+++++..+..
T Consensus 286 ~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g 365 (543)
T 1nir_A 286 IASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVG 365 (543)
T ss_dssp EECSSSSEEEEEETTTTEEEEEECTTSSSCEEEEEECCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECS
T ss_pred EECCCCCEEEEEECCCCeEEEEEecCCCcceeEEeccCcCccCceECCCCCEEEEEecCCCeEEEEECCCCeEEEeeccC
Confidence 9999999999999999999999998876554 4555566889999999998887765 78999999999999888874
Q ss_pred ---CCCCEEEEEEcCC-CCEEEEEe--CCeEEEEEcCCCCC----ceeEEEeecCCCceEEEEEeCCCCEEEEEE-----
Q 003236 723 ---HKNQVHSVCWNTS-GEYLASVS--DELVRVWSIGSGSK----GECIHELSCTGNKFHSCVFHPTFPSLLVIG----- 787 (837)
Q Consensus 723 ---h~~~V~sl~~spd-g~~Lasgs--Dg~I~IwDl~s~~~----~~~i~~~~~~~~~I~sv~fspdg~~L~sgs----- 787 (837)
|.+....+ ++|+ +.+++++. |++|.|||+.+... .+++.++..+...+..++++|++++|++++
T Consensus 366 ~~ph~g~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v~~~pdg~~l~v~~~~~~~ 444 (543)
T 1nir_A 366 KTPHPGRGANF-VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPD 444 (543)
T ss_dssp SSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCCEEEECCTTCSS
T ss_pred CCCCCCCCccc-CCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcCCCCceEEEcCCCCCcEEEecCCCCC
Confidence 55444443 4676 66677765 78999999987321 478999999988889999999999999987
Q ss_pred --cCCeEEEEECCCCcEE-Ee---------ccCCCCeeEEEEeCCCCEEEEEE-----CCCcEEEeC
Q 003236 788 --CYETLELWNMTENKTL-TL---------SAHDKLVSSLAASTVNGMVASAS-----HDKCVKIWK 837 (837)
Q Consensus 788 --~dg~I~IwDl~s~~~~-~l---------~~h~~~V~sla~spdg~~LaSgs-----~DG~I~IWd 837 (837)
.+++|.|||+.+++.. .. ..+...+..++|+|+|+.|+++. .|+.|.|||
T Consensus 445 ~~~~~~v~v~d~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~s~~~~~~~~~~i~v~D 511 (543)
T 1nir_A 445 ARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVD 511 (543)
T ss_dssp HHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCEEEEEEECSSSSEEEEEEECCTTSCCEEEEEE
T ss_pred cccCceEEEEECCCCCCCeEEeechhhcccCCCCCceEeccCCCCCCEEEEEeecCCCCCCeEEEEE
Confidence 3679999999988765 32 35678899999999999888763 479999997
|
| >3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A | Back alignment and structure |
|---|
Probab=99.95 E-value=8.5e-27 Score=258.02 Aligned_cols=245 Identities=9% Similarity=0.029 Sum_probs=188.2
Q ss_pred EEeCCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeEEeeccccceEEEEEcCCCCeEEEEEe
Q 003236 581 LWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCD 660 (837)
Q Consensus 581 VWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~sl~fspdg~~llasgs 660 (837)
||++.+...+..+..|...|++++|+||+++|++|+.|+ ++|||+.+... ... .+...+..+++.++++.++++++
T Consensus 3 i~s~~~~~~~~~~~~h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~~-~~~--~~~~~~~~~~~~~~~~~~~~~~~ 78 (355)
T 3vu4_A 3 LGSMITRNPIVPENHVSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPVAH-IMS--QEMRHLSKVRMLHRTNYVAFVTG 78 (355)
T ss_dssp ----------------CCCCCEEEECTTSSEEEEECSSE-EEEEEETTEEE-EEE--EECSCCCEEEECTTSSEEEEECS
T ss_pred cccccccCCccccccCCCceEEEEECCCCCEEEEEcCCE-EEEEecCCcce-eee--eecCCeEEEEEcCCCCEEEEEEC
Confidence 566777777777889999999999999999999998775 78999986543 222 22235888899988887877888
Q ss_pred CCCcEEEEECCCCeeeeEEecCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCC-eEEEEEcCCCCCEEEEEEcCCCCEE
Q 003236 661 NNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQ-VCRLKLQGHKNQVHSVCWNTSGEYL 739 (837)
Q Consensus 661 ~Dg~I~vwDl~t~~~i~~~~~~~~i~sl~~sp~g~~llags~dg~I~iwDl~s~-~~~~~l~~h~~~V~sl~~spdg~~L 739 (837)
.|+.|++||+.+++++..+.+...|.++.++++ .++ .+.++.|++||+.+. +.+..+.. ....+++++ .++
T Consensus 79 ~d~~v~iWd~~~~~~~~~~~~~~~v~~v~~~~~--~~~-~~~~~~i~i~d~~~~~~~~~~~~~---~~~~~~~s~--~~l 150 (355)
T 3vu4_A 79 VKEVVHIWDDVKKQDVSRIKVDAPVKDLFLSRE--FIV-VSYGDVISVFKFGNPWKRITDDIR---FGGVCEFSN--GLL 150 (355)
T ss_dssp STTEEEEEETTTTEEEEEEECSSCEEEEEECSS--EEE-EEETTEEEEEESSTTCCBSSCCEE---EEEEEEEET--TEE
T ss_pred CccEEEEEECCCCcEEEEEECCCceEEEEEcCC--EEE-EEEcCEEEEEECCCCceeeEEecc---CCceEEEEc--cEE
Confidence 899999999999999999998899999999876 333 346899999999987 55544443 444566777 666
Q ss_pred EEE--e-CCeEEEEEcCCCCCc------------e-eEEEeecCCCceEEEEEeCCCCEEEEEEcCCe-EEEEECCCCcE
Q 003236 740 ASV--S-DELVRVWSIGSGSKG------------E-CIHELSCTGNKFHSCVFHPTFPSLLVIGCYET-LELWNMTENKT 802 (837)
Q Consensus 740 asg--s-Dg~I~IwDl~s~~~~------------~-~i~~~~~~~~~I~sv~fspdg~~L~sgs~dg~-I~IwDl~s~~~ 802 (837)
+++ + ||.|++||+.++... . ++..+..|...|.+++|+|++.+|++++.|++ |+|||+.+++.
T Consensus 151 a~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~~~ 230 (355)
T 3vu4_A 151 VYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDGVL 230 (355)
T ss_dssp EEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTTSSEEEEEETTCSEEEEEETTTCCE
T ss_pred EEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEeCCCCEEEEEECCCCcE
Confidence 664 4 999999999875310 1 26778899999999999999999999999998 99999999988
Q ss_pred E-Eec-c-CCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 003236 803 L-TLS-A-HDKLVSSLAASTVNGMVASASHDKCVKIWK 837 (837)
Q Consensus 803 ~-~l~-~-h~~~V~sla~spdg~~LaSgs~DG~I~IWd 837 (837)
+ .+. + |...|++++|+|++++|++++.|++|+|||
T Consensus 231 ~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~ 268 (355)
T 3vu4_A 231 VREFRRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFE 268 (355)
T ss_dssp EEEEECTTCCSCEEEEEECTTSCEEEEEETTCEEEEEE
T ss_pred EEEEEcCCCCCcEEEEEECCCCCEEEEEECCCEEEEEE
Confidence 7 454 4 999999999999999999999999999996
|
| >3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=99.95 E-value=2.5e-25 Score=250.72 Aligned_cols=277 Identities=10% Similarity=0.111 Sum_probs=226.2
Q ss_pred cccCCCeEEcccCCCceEEeecCCCCCCCCccccccccCCCeeeeEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEE
Q 003236 502 LTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVL 581 (837)
Q Consensus 502 l~~~~~~v~~Gs~D~~v~~w~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~H~~~V~sl~fSpdg~~Lasgs~Dg~I~V 581 (837)
+.+...++++++.|+.|.+|........ .......+.+|.+.|.+++|++++.++++++.|+.|++
T Consensus 130 ~s~~~~~~~~~~~~~~i~~~d~~~g~~~--------------~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~ 195 (433)
T 3bws_A 130 FIDNTRLAIPLLEDEGMDVLDINSGQTV--------------RLSPPEKYKKKLGFVETISIPEHNELWVSQMQANAVHV 195 (433)
T ss_dssp ESSSSEEEEEBTTSSSEEEEETTTCCEE--------------EECCCHHHHTTCCEEEEEEEGGGTEEEEEEGGGTEEEE
T ss_pred EeCCCeEEEEeCCCCeEEEEECCCCeEe--------------eecCcccccccCCceeEEEEcCCCEEEEEECCCCEEEE
Confidence 3445567888888889999965432100 00011134689999999999999999999999999999
Q ss_pred EeCCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEe-CCCeEEEEEcCCCCceeEEeeccccceEEEEEcCCCCeEEEEEe
Q 003236 582 WCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSS-ADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCD 660 (837)
Q Consensus 582 Wd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs-~Dg~I~IWDl~~~~~~~~~~~~h~~~V~sl~fspdg~~llasgs 660 (837)
||+.+++.+..+..|...+.+++|+|+++++++++ .|+.|++||+.+++. +..+.. ...+.+++|+|++..+++++.
T Consensus 196 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~-~~~~~~-~~~~~~~~~~~~g~~l~~~~~ 273 (433)
T 3bws_A 196 FDLKTLAYKATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLE-IRKTDK-IGLPRGLLLSKDGKELYIAQF 273 (433)
T ss_dssp EETTTCCEEEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEE-EEECCC-CSEEEEEEECTTSSEEEEEEE
T ss_pred EECCCceEEEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcE-EEEecC-CCCceEEEEcCCCCEEEEEEC
Confidence 99999999999989999999999999999886554 799999999987653 455544 456999999999886665543
Q ss_pred -------CCCcEEEEECCCCeeeeEEecCCCeeEEEEecCCCEEEEE-EcCCeEEEEECCCCeEEEEEcCCCCCEEEEEE
Q 003236 661 -------NNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAA-AIENYISILDVETQVCRLKLQGHKNQVHSVCW 732 (837)
Q Consensus 661 -------~Dg~I~vwDl~t~~~i~~~~~~~~i~sl~~sp~g~~llag-s~dg~I~iwDl~s~~~~~~l~~h~~~V~sl~~ 732 (837)
.|+.|++||+.+++.+..+.+...+.+++|+|+++.++++ +.++.|++||+.+++.+..+. +...+.+++|
T Consensus 274 ~~~~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~~~~~~-~~~~~~~~~~ 352 (433)
T 3bws_A 274 SASNQESGGGRLGIYSMDKEKLIDTIGPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKVQKSIP-VFDKPNTIAL 352 (433)
T ss_dssp ESCTTCSCCEEEEEEETTTTEEEEEEEEEECEEEEEECSSTTEEEEEETTTTEEEEEETTTTEEEEEEE-CSSSEEEEEE
T ss_pred CCCccccCCCeEEEEECCCCcEEeeccCCCCcceEEECCCCCEEEEEecCCCEEEEEECCCCcEEEEec-CCCCCCeEEE
Confidence 5789999999999988888777789999999999876555 678999999999998888776 7788999999
Q ss_pred cCCCCEEEEEe-C---------------CeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEc-CCeEEEE
Q 003236 733 NTSGEYLASVS-D---------------ELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGC-YETLELW 795 (837)
Q Consensus 733 spdg~~Lasgs-D---------------g~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fspdg~~L~sgs~-dg~I~Iw 795 (837)
+|++++|++++ + |.|++||+.++ +.+..+.. ...+.+++|+|++++|++++. |+.|++|
T Consensus 353 s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~---~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~d~~i~v~ 428 (433)
T 3bws_A 353 SPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTD---TVKEFWEA-GNQPTGLDVSPDNRYLVISDFLDHQIRVY 428 (433)
T ss_dssp CTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTT---EEEEEEEC-SSSEEEEEECTTSCEEEEEETTTTEEEEE
T ss_pred cCCCCEEEEEecCCCccccccccccccceEEEEEECCCC---cEEEEecC-CCCCceEEEcCCCCEEEEEECCCCeEEEE
Confidence 99999888876 2 49999999887 56666655 567899999999999998886 9999999
Q ss_pred ECCC
Q 003236 796 NMTE 799 (837)
Q Consensus 796 Dl~s 799 (837)
++..
T Consensus 429 ~~~~ 432 (433)
T 3bws_A 429 RRDG 432 (433)
T ss_dssp EETT
T ss_pred EecC
Confidence 9864
|
| >3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.95 E-value=3.7e-26 Score=250.92 Aligned_cols=263 Identities=11% Similarity=0.089 Sum_probs=201.1
Q ss_pred ccCCCeEEcccCCCceEEeecCCCCCCCCccccccccCCCeeeeEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEE
Q 003236 503 TDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLW 582 (837)
Q Consensus 503 ~~~~~~v~~Gs~D~~v~~w~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~H~~~V~sl~fSpdg~~Lasgs~Dg~I~VW 582 (837)
...+.++++|+.|+.|++|...... .. ..+. ...|.++.|+|+ +++++.|++|++|
T Consensus 45 ~~d~~~l~sg~~Dg~v~iwd~~~~~----------------~~---~~~~--~~~v~~~~~~~~---~~s~s~D~~i~~w 100 (343)
T 3lrv_A 45 YYDKWVCMCRCEDGALHFTQLKDSK----------------TI---TTIT--TPNPRTGGEHPA---IISRGPCNRLLLL 100 (343)
T ss_dssp SEEEEEEEEEEETTEEEEEEESSSS----------------CE---EEEE--EECCCTTCCCCS---EEEECSTTEEEEE
T ss_pred cCCCCEEEEECCCCcEEEEECCCCc----------------EE---EEEe--cCCceeeeeCCc---eEEecCCCeEEEE
Confidence 3456789999999999999764431 11 1111 355778888888 9999999999999
Q ss_pred eCC---------CCeEEEEec-cCCCCeEEEEEcC--CCCEEEEEeCCCeEEEEEcCCCCceeEEe-eccccceEEEEEc
Q 003236 583 CTE---------SFTVKSTLE-EHTQWITDVRFSP--SLSRLATSSADRTVRVWDTENPDYSLRTF-TGHSTTVMSLDFH 649 (837)
Q Consensus 583 d~~---------t~~~~~~l~-~h~~~I~~l~fsp--dg~~Latgs~Dg~I~IWDl~~~~~~~~~~-~~h~~~V~sl~fs 649 (837)
+.. +++.+..+. .|.+.|.+++|+| ++++|++++.||+|++||+.+++. +... ..|...|.+++|+
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~-~~~~~~~~~~~i~~~~~~ 179 (343)
T 3lrv_A 101 YPGNQITILDSKTNKVLREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQ-YIVHSAKSDVEYSSGVLH 179 (343)
T ss_dssp ETTTEEEEEETTTCCEEEEEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCE-EEEECCCSSCCCCEEEEC
T ss_pred EccCceEEeecCCcceeEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcE-EEEEecCCCCceEEEEEC
Confidence 665 445444443 6778999999999 999999999999999999998765 4444 4556689999999
Q ss_pred CCCCeEEEEEeCCCcEEEEECCCCeee-eEEec--CCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEcC---C
Q 003236 650 PSKEDLLCSCDNNSEIRYWSINNGSCA-GVFKC--QSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQG---H 723 (837)
Q Consensus 650 pdg~~llasgs~Dg~I~vwDl~t~~~i-~~~~~--~~~i~sl~~sp~g~~llags~dg~I~iwDl~s~~~~~~l~~---h 723 (837)
|++. ++++|+.||.|++||+++++.+ ..+.. ...|.+++|+|++.+|++++ ++.|++||+++.+.+..+.. |
T Consensus 180 pdg~-~lasg~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~-~~~v~iwd~~~~~~~~~~~~~~~~ 257 (343)
T 3lrv_A 180 KDSL-LLALYSPDGILDVYNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVEC-DQTVVCFDLRKDVGTLAYPTYTIP 257 (343)
T ss_dssp TTSC-EEEEECTTSCEEEEESSCTTSCCEECCCCTTSCEEEEEECTTSSEEEEEE-SSBEEEEETTSSTTCBSSCCCBC-
T ss_pred CCCC-EEEEEcCCCEEEEEECCCCCCCccEEeccCCCCEEEEEEeCCCCEEEEEe-CCeEEEEEcCCCCcceeecccccc
Confidence 9976 7779999999999999999877 55654 67899999999999999999 55999999998866544432 3
Q ss_pred CCCEE--EEEEcCCCCEEEEEe--CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeC---CCCEEEEEEcCCeEEEEE
Q 003236 724 KNQVH--SVCWNTSGEYLASVS--DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHP---TFPSLLVIGCYETLELWN 796 (837)
Q Consensus 724 ~~~V~--sl~~spdg~~Lasgs--Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fsp---dg~~L~sgs~dg~I~IwD 796 (837)
...+. +++|+|++++|++++ |+.|+||++...... ... ..+..++|.+ +...+++++.|+.+.++-
T Consensus 258 ~~~~~~~~~~~~~~g~~l~~~s~~d~~i~v~~~~~~~~~--~~~-----~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~ 330 (343)
T 3lrv_A 258 EFKTGTVTYDIDDSGKNMIAYSNESNSLTIYKFDKKTKN--WTK-----DEESALCLQSDTADFTDMDVVCGDGGIAAIL 330 (343)
T ss_dssp ----CCEEEEECTTSSEEEEEETTTTEEEEEEECTTTCS--EEE-----EEEEECCC----CCCCEEEEEEETTEEEEEE
T ss_pred cccccceEEEECCCCCEEEEecCCCCcEEEEEEcccccc--eEe-----cCceeEecCccccccceeEEEecCCceEEEE
Confidence 33443 699999999999966 889999999765321 111 4567788888 888999999999888875
Q ss_pred CCC
Q 003236 797 MTE 799 (837)
Q Consensus 797 l~s 799 (837)
...
T Consensus 331 ~~~ 333 (343)
T 3lrv_A 331 KTN 333 (343)
T ss_dssp ECS
T ss_pred ecC
Confidence 433
|
| >2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A | Back alignment and structure |
|---|
Probab=99.94 E-value=7e-25 Score=238.02 Aligned_cols=285 Identities=13% Similarity=0.116 Sum_probs=198.6
Q ss_pred eeeeEEEEecCCCCC----eEEEEEcCCCC---EEEEEECCCcEEEEeCCCC---eEEEEeccCCCCeEEEEEcCCCCEE
Q 003236 543 FTFTEFQLIPASTSK----VESCHFSPDGK---LLATGGHDKKAVLWCTESF---TVKSTLEEHTQWITDVRFSPSLSRL 612 (837)
Q Consensus 543 ~~~~~~~~l~~H~~~----V~sl~fSpdg~---~Lasgs~Dg~I~VWd~~t~---~~~~~l~~h~~~I~~l~fspdg~~L 612 (837)
..+..+..|+.-.+. |.++-|-.-|- .+++++ ...|++|+..++ ++++++..|..+|..|.|.||..-|
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~lw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 101 (356)
T 2w18_A 23 GNLQLVSELKNPSGSCSVDVSAMFWERAGCKEPCIITAC-EDVVSLWKALDAWQWEKLYTWHFAEVPVLQIVPVPDVYNL 101 (356)
T ss_dssp -CEEEEEEECCCCSSCEEEEEEEEEC----CEEEEEEEE-SSEEEEEEESSSSBEEEEEEEECCSSCEEEECCCTTCCSC
T ss_pred ceeeeeehhcCCCCCeEEEEeeeeeccCCCCccEEEEec-cceEEEcccCCCccceeeEEEeccCceeEEEEEcCcccce
Confidence 344556666655443 45555644332 566666 468999999988 8999999999999999999964332
Q ss_pred -EEEeCC---CeEEEEEcCCC--C-ceeEEeeccccceEEEEEcCCCCeEEEEEe--CCCcEEEEECC-CCeeeeEEec-
Q 003236 613 -ATSSAD---RTVRVWDTENP--D-YSLRTFTGHSTTVMSLDFHPSKEDLLCSCD--NNSEIRYWSIN-NGSCAGVFKC- 681 (837)
Q Consensus 613 -atgs~D---g~I~IWDl~~~--~-~~~~~~~~h~~~V~sl~fspdg~~llasgs--~Dg~I~vwDl~-t~~~i~~~~~- 681 (837)
.++-.. +.|+..-+... . .......+|...|.++ ++ ..++.+++ .|+.|++|++. +++.+..+..
T Consensus 102 ~~~~~~~~~~~~v~sla~spd~~~~~~~l~s~g~~~~v~~l---~~-g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~ 177 (356)
T 2w18_A 102 VCVALGNLEIREIRALFCSSDDESEKQVLLKSGNIKAVLGL---TK-RRLVSSSGTLSDQQVEVMTFAEDGGGKENQFLM 177 (356)
T ss_dssp EEEEECSSSEEEEEEECC------CCEEEEEEEEEEEEEEE---TT-TEEEEEESSSTTCEEEEEEECTTSCEEEEEEEC
T ss_pred eeeeeccccccceEEEEECCCccccccEEEeCCCeEEEEec---CC-CcEEEecccCCCCcEEEEEECCCCceeeeeccC
Confidence 222211 11211111111 0 1122224455555554 34 55665643 59999999994 4776665554
Q ss_pred CCCeeEEEEec---CCCEEEEEEcCCeEEEEECCCCeEEEEEcCCC---CCEEEEEEcCCCCEE------------EEEe
Q 003236 682 QSGATQMRFQP---RLGRILAAAIENYISILDVETQVCRLKLQGHK---NQVHSVCWNTSGEYL------------ASVS 743 (837)
Q Consensus 682 ~~~i~sl~~sp---~g~~llags~dg~I~iwDl~s~~~~~~l~~h~---~~V~sl~~spdg~~L------------asgs 743 (837)
...+..++|++ ++..|++++.|++|+|||+++++++.++.+|. ..+.+++|+|+|.++ ++|+
T Consensus 178 ~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs 257 (356)
T 2w18_A 178 PPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRS 257 (356)
T ss_dssp CCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEETTEEEEEEC------------
T ss_pred CCceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccC
Confidence 55688889998 77999999999999999999999999998754 367788999999987 4466
Q ss_pred -CCeEEEEEcCCCCCceeEEEe-----ecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE-EeccCCCCee-EE
Q 003236 744 -DELVRVWSIGSGSKGECIHEL-----SCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVS-SL 815 (837)
Q Consensus 744 -Dg~I~IwDl~s~~~~~~i~~~-----~~~~~~I~sv~fspdg~~L~sgs~dg~I~IwDl~s~~~~-~l~~h~~~V~-sl 815 (837)
|++|++||..++ .++..+ .+|...+.+..++ +..+++++.|++|+|||+.+++++ ++.+|...+. .+
T Consensus 258 ~D~tIklWd~~tg---k~l~v~~~~~p~Gh~~~~lsg~~s--g~~lASgS~DgTIkIWDl~tGk~l~tL~gH~~~vvs~v 332 (356)
T 2w18_A 258 PVFQLIVINPKTT---LSVGVMLYCLPPGQAGRFLEGDVK--DHCAAAILTSGTIAIWDLLLGQCTALLPPVSDQHWSFV 332 (356)
T ss_dssp CCEEEEEEETTTT---EEEEEEEECCCTTCCCCEEEEEEE--TTEEEEEETTSCEEEEETTTCSEEEEECCC--CCCCEE
T ss_pred CCcEEEEEECCCC---EEEEEEEeeccCCCcceeEccccC--CCEEEEEcCCCcEEEEECCCCcEEEEecCCCCCeEEEE
Confidence 889999999887 555443 2444445444444 778999999999999999999988 6677877655 68
Q ss_pred EEeCCCCEEEEEECCCcEEEeC
Q 003236 816 AASTVNGMVASASHDKCVKIWK 837 (837)
Q Consensus 816 a~spdg~~LaSgs~DG~I~IWd 837 (837)
+|+|||++|++|+.|++|+|||
T Consensus 333 afSPDG~~LaSGS~D~TIklWd 354 (356)
T 2w18_A 333 KWSGTDSHLLAGQKDGNIFVYH 354 (356)
T ss_dssp EECSSSSEEEEECTTSCEEEEE
T ss_pred EECCCCCEEEEEECCCcEEEec
Confidence 9999999999999999999997
|
| >2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A | Back alignment and structure |
|---|
Probab=99.94 E-value=4.4e-25 Score=249.94 Aligned_cols=265 Identities=13% Similarity=0.078 Sum_probs=217.0
Q ss_pred EEecCCCCCeEEEEEcC--------------CCCEEEEEECC------CcEEEEeCCCCeEEEEeccCCCCeEEEEEcCC
Q 003236 549 QLIPASTSKVESCHFSP--------------DGKLLATGGHD------KKAVLWCTESFTVKSTLEEHTQWITDVRFSPS 608 (837)
Q Consensus 549 ~~l~~H~~~V~sl~fSp--------------dg~~Lasgs~D------g~I~VWd~~t~~~~~~l~~h~~~I~~l~fspd 608 (837)
..+.+|...|.++++++ .+..+++++.+ +.|++||++. .....+..|...|.+++|+||
T Consensus 111 ~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~~~~~~l~~~s~~~~~~~~~~i~i~d~~g-~~~~~l~~~~~~v~~~~~Spd 189 (415)
T 2hqs_A 111 NSYKVNKQWLRYAGHTASDEVFEKLTGIKGAFRTRIAYVVQTNGGQFPYELRVSDYDG-YNQFVVHRSPQPLMSPAWSPD 189 (415)
T ss_dssp EEEEECGGGHHHHHHHHHHHHHHHHHSSCCCTTCEEEEEEECSSSSCCEEEEEEETTS-CSCEEEEEESSCEEEEEECTT
T ss_pred eEEEcChhHHHHHHHHHHHHHHHHHcCCCCcCCCEEEEEEecCCCCccceEEEEcCCC-CCCEEEeCCCCcceeeEEcCC
Confidence 44678888888887775 15566666554 7999999975 446677789999999999999
Q ss_pred CCEEEEEeCCC---eEEEEEcCCCCceeEEeeccccceEEEEEcCCCCeEEEEEeCCCc--EEEEECCCCeeeeEEecCC
Q 003236 609 LSRLATSSADR---TVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSE--IRYWSINNGSCAGVFKCQS 683 (837)
Q Consensus 609 g~~Latgs~Dg---~I~IWDl~~~~~~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~--I~vwDl~t~~~i~~~~~~~ 683 (837)
|++|++++.|+ .|++||+.+++. ..+..|...+.+++|+|++..++++++.++. |++||+.++++.....+..
T Consensus 190 g~~la~~s~~~~~~~i~~~d~~tg~~--~~l~~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~~~l~~~~~ 267 (415)
T 2hqs_A 190 GSKLAYVTFESGRSALVIQTLANGAV--RQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQVTDGRS 267 (415)
T ss_dssp SSEEEEEECTTSSCEEEEEETTTCCE--EEEECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEECCCCSS
T ss_pred CCEEEEEEecCCCcEEEEEECCCCcE--EEeecCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCEEeCcCCCC
Confidence 99999999885 999999998763 4567788899999999999988878876654 9999999988765555567
Q ss_pred CeeEEEEecCCCEEEEEEcC-C--eEEEEECCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEe-C---CeEEEEEcCCCC
Q 003236 684 GATQMRFQPRLGRILAAAIE-N--YISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-D---ELVRVWSIGSGS 756 (837)
Q Consensus 684 ~i~sl~~sp~g~~llags~d-g--~I~iwDl~s~~~~~~l~~h~~~V~sl~~spdg~~Lasgs-D---g~I~IwDl~s~~ 756 (837)
.+.+++|+|+++.|++++.+ + .|++||+.+++. ..+..+...+.+++|+|+|++|++++ + ..|++||+.++.
T Consensus 268 ~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~ 346 (415)
T 2hqs_A 268 NNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAP-QRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGG 346 (415)
T ss_dssp CEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCC-EECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCC
T ss_pred cccceEECCCCCEEEEEECCCCCcEEEEEECCCCCE-EEEecCCCcccCeEECCCCCEEEEEECcCCceEEEEEECCCCC
Confidence 79999999999999988864 4 788889988764 34555777899999999999999887 4 489999998873
Q ss_pred CceeEEEeecCCCceEEEEEeCCCCEEEEEEcCC---eEEEEECCCCcEEEeccCCCCeeEEEEeCCCC
Q 003236 757 KGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYE---TLELWNMTENKTLTLSAHDKLVSSLAASTVNG 822 (837)
Q Consensus 757 ~~~~i~~~~~~~~~I~sv~fspdg~~L~sgs~dg---~I~IwDl~s~~~~~l~~h~~~V~sla~spdg~ 822 (837)
. ..+..+. .+.+++|+|+|++|++++.++ .|++||+..+....+..|.+.|.+++|+|...
T Consensus 347 ---~-~~l~~~~-~~~~~~~spdg~~l~~~s~~~~~~~l~~~d~~g~~~~~l~~~~~~v~~~~~~~~~~ 410 (415)
T 2hqs_A 347 ---V-QVLSSTF-LDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRFKARLPATDGQVKFPAWSPYLH 410 (415)
T ss_dssp ---E-EECCCSS-SCEEEEECTTSSEEEEEEEETTEEEEEEEETTSCCEEECCCSSSEEEEEEECCCCC
T ss_pred ---E-EEecCCC-CcCCeEEcCCCCEEEEEEcCCCccEEEEEECCCCcEEEeeCCCCCCcCCccccccc
Confidence 3 3344443 889999999999999998877 89999999888888999999999999999654
|
| >4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A | Back alignment and structure |
|---|
Probab=99.93 E-value=1.3e-25 Score=252.16 Aligned_cols=236 Identities=11% Similarity=0.110 Sum_probs=178.1
Q ss_pred ccCCCeEEcccCCCceEEeecCCCCCCCCccccccccCCCeeeeEEEEecCCCCCeEEEEEcC--------CCCEEEEEE
Q 003236 503 TDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSP--------DGKLLATGG 574 (837)
Q Consensus 503 ~~~~~~v~~Gs~D~~v~~w~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~H~~~V~sl~fSp--------dg~~Lasgs 574 (837)
.....++++|+.|++|++|...... ......+..+.+|.+.|++|+|+| |+++||+|+
T Consensus 98 ~~~~~~las~~~d~~v~lw~~~~~~--------------~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s 163 (393)
T 4gq1_A 98 PVYSLFLACVCQDNTVRLIITKNET--------------IITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVG 163 (393)
T ss_dssp CEEEEEEEEEETTSCEEEEEEETTE--------------EEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEE
T ss_pred CCCCCEEEEEeCCCcEEEEECCCCc--------------cceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEE
Confidence 3445689999999999999654321 112234456789999999999998 889999999
Q ss_pred CCCcEEEEeCCCCeEEEEeccCCCCeEEEEEcCCC-CEEEEEeCCCeEEEEEcCCCCcee--------------------
Q 003236 575 HDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSL-SRLATSSADRTVRVWDTENPDYSL-------------------- 633 (837)
Q Consensus 575 ~Dg~I~VWd~~t~~~~~~l~~h~~~I~~l~fspdg-~~Latgs~Dg~I~IWDl~~~~~~~-------------------- 633 (837)
.|++|+|||+.++..+..+..|...|.+++|+|++ .+|++++.|++|++||+.++....
T Consensus 164 ~D~tv~~Wd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~ 243 (393)
T 4gq1_A 164 DDCTLIIWRLTDEGPILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLP 243 (393)
T ss_dssp TTSEEEEEEEETTEEEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGG
T ss_pred CCCeEEEEECCCCceeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEeccccc
Confidence 99999999999888888888899999999999986 489999999999999998754311
Q ss_pred ----EEeeccccceEEEEEc-CCCCeEEEEEeCCCcEEEEECCCCeeeeEEecC-------------------CCeeEEE
Q 003236 634 ----RTFTGHSTTVMSLDFH-PSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ-------------------SGATQMR 689 (837)
Q Consensus 634 ----~~~~~h~~~V~sl~fs-pdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~~-------------------~~i~sl~ 689 (837)
....+|...|.++.|+ +++. .+++++.|+.|++||+..+.....+... .......
T Consensus 244 ~~~~~~~~~~~~~v~~v~~~~~dg~-~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (393)
T 4gq1_A 244 LVNTCHSSGIASSLANVRWIGSDGS-GILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISLFPSLLGAC 322 (393)
T ss_dssp GC------CCSSSCSEEEEETTTTC-EEEEECTTSEEEEEEC-------------------CCSCSEEEECSSCCSSCCE
T ss_pred ceeeeecccccccceeeeeecCCCC-EEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEccccccccccCcceeEE
Confidence 1224677889999997 5655 6679999999999999877655443221 1122233
Q ss_pred Eec-CCCE-EEEEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCeEEEEEcC
Q 003236 690 FQP-RLGR-ILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIG 753 (837)
Q Consensus 690 ~sp-~g~~-llags~dg~I~iwDl~s~~~~~~l~~h~~~V~sl~~spdg~~LasgsDg~I~IwDl~ 753 (837)
+++ .++. +++++.|+.|++||+.++.++..+..|...|.+++|+|||++||+++++.+.+|.+.
T Consensus 323 ~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~~~~~~~V~svafspdG~~LA~as~~Gv~lvrL~ 388 (393)
T 4gq1_A 323 PHPRYMDYFATAHSQHGLIQLINTYEKDSNSIPIQLGMPIVDFCWHQDGSHLAIATEGSVLLTRLM 388 (393)
T ss_dssp ECSSCTTEEEEEETTTTEEEEEETTCTTCCEEEEECSSCEEEEEECTTSSEEEEEESSEEEEEEEG
T ss_pred EccCCCCEEEEEECCCCEEEEEECCCCcEEEEecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEe
Confidence 444 3444 455667999999999999888888889999999999999999999998878888764
|
| >2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A | Back alignment and structure |
|---|
Probab=99.93 E-value=8.4e-25 Score=247.66 Aligned_cols=273 Identities=15% Similarity=0.168 Sum_probs=219.8
Q ss_pred CCeEEEEEcCCCC-EEEEEE----CCC----cEEEEeC--CCCeEE--EEeccCCCCeEEEEEcC--------------C
Q 003236 556 SKVESCHFSPDGK-LLATGG----HDK----KAVLWCT--ESFTVK--STLEEHTQWITDVRFSP--------------S 608 (837)
Q Consensus 556 ~~V~sl~fSpdg~-~Lasgs----~Dg----~I~VWd~--~t~~~~--~~l~~h~~~I~~l~fsp--------------d 608 (837)
..|....|++.|. ++++|+ .|| .|+|||+ .+++.+ ..+.+|...+..+++++ .
T Consensus 63 ~~~~~~~w~~~g~~~~~~g~~~~~~~G~~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~~~ 142 (415)
T 2hqs_A 63 QEVQPAAWSALGIDAVVVGQVTPNPDGSYNVAYQLVDTGGAPGTVLAQNSYKVNKQWLRYAGHTASDEVFEKLTGIKGAF 142 (415)
T ss_dssp GGCCHHHHHTTTCCEEEEEEEEECTTSCEEEEEEEEECSSSTTCEEEEEEEEECGGGHHHHHHHHHHHHHHHHHSSCCCT
T ss_pred cCcCHHHHHhcCCCEEEEEEEEECCCCeEEEEEEEEeCCCCCCCEEeeeEEEcChhHHHHHHHHHHHHHHHHHcCCCCcC
Confidence 4677888888775 666776 467 8999999 888877 55888888888887764 1
Q ss_pred CCEEEEEeCC------CeEEEEEcCCCCceeEEeeccccceEEEEEcCCCCeEEEEEeCC---CcEEEEECCCCeeeeEE
Q 003236 609 LSRLATSSAD------RTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN---SEIRYWSINNGSCAGVF 679 (837)
Q Consensus 609 g~~Latgs~D------g~I~IWDl~~~~~~~~~~~~h~~~V~sl~fspdg~~llasgs~D---g~I~vwDl~t~~~i~~~ 679 (837)
+..|+.++.+ +.|++||++... ...+.+|...|.+++|+|++..++ +++.+ ..|++||+.++++....
T Consensus 143 ~~~l~~~s~~~~~~~~~~i~i~d~~g~~--~~~l~~~~~~v~~~~~Spdg~~la-~~s~~~~~~~i~~~d~~tg~~~~l~ 219 (415)
T 2hqs_A 143 RTRIAYVVQTNGGQFPYELRVSDYDGYN--QFVVHRSPQPLMSPAWSPDGSKLA-YVTFESGRSALVIQTLANGAVRQVA 219 (415)
T ss_dssp TCEEEEEEECSSSSCCEEEEEEETTSCS--CEEEEEESSCEEEEEECTTSSEEE-EEECTTSSCEEEEEETTTCCEEEEE
T ss_pred CCEEEEEEecCCCCccceEEEEcCCCCC--CEEEeCCCCcceeeEEcCCCCEEE-EEEecCCCcEEEEEECCCCcEEEee
Confidence 5667666654 799999998533 577788999999999999988655 55555 49999999999887666
Q ss_pred ecCCCeeEEEEecCCCEEEE-EEcCC--eEEEEECCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEe--CC--eEEEEEc
Q 003236 680 KCQSGATQMRFQPRLGRILA-AAIEN--YISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS--DE--LVRVWSI 752 (837)
Q Consensus 680 ~~~~~i~sl~~sp~g~~lla-gs~dg--~I~iwDl~s~~~~~~l~~h~~~V~sl~~spdg~~Lasgs--Dg--~I~IwDl 752 (837)
.+...+.+++|+|+++.|++ ++.++ .|++||+++++. ..+..|...+.+++|+|||++|++++ ++ .|++||+
T Consensus 220 ~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~ 298 (415)
T 2hqs_A 220 SFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQI-RQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNI 298 (415)
T ss_dssp CCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE-EECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEET
T ss_pred cCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCE-EeCcCCCCcccceEECCCCCEEEEEECCCCCcEEEEEEC
Confidence 66778999999999998884 44444 599999998876 56677888999999999999988877 34 6888898
Q ss_pred CCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcC---CeEEEEECCCCcEEEeccCCCCeeEEEEeCCCCEEEEEEC
Q 003236 753 GSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCY---ETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASH 829 (837)
Q Consensus 753 ~s~~~~~~i~~~~~~~~~I~sv~fspdg~~L~sgs~d---g~I~IwDl~s~~~~~l~~h~~~V~sla~spdg~~LaSgs~ 829 (837)
.++. ...+..+...+.+++|+|+|++|++++.+ ..|++||+.+++...+..|. .+.+++|+|+|++|++++.
T Consensus 299 ~~~~----~~~l~~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~~~l~~~~-~~~~~~~spdg~~l~~~s~ 373 (415)
T 2hqs_A 299 NGGA----PQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQVLSSTF-LDETPSLAPNGTMVIYSSS 373 (415)
T ss_dssp TSSC----CEECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEEECCCSS-SCEEEEECTTSSEEEEEEE
T ss_pred CCCC----EEEEecCCCcccCeEECCCCCEEEEEECcCCceEEEEEECCCCCEEEecCCC-CcCCeEEcCCCCEEEEEEc
Confidence 8763 23344566788999999999999988875 48999999999887777665 8999999999999999887
Q ss_pred CC---cEEEeC
Q 003236 830 DK---CVKIWK 837 (837)
Q Consensus 830 DG---~I~IWd 837 (837)
|+ .|++||
T Consensus 374 ~~~~~~l~~~d 384 (415)
T 2hqs_A 374 QGMGSVLNLVS 384 (415)
T ss_dssp ETTEEEEEEEE
T ss_pred CCCccEEEEEE
Confidence 77 788885
|
| >3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=6.8e-23 Score=223.48 Aligned_cols=268 Identities=10% Similarity=0.029 Sum_probs=217.4
Q ss_pred CCeEEEEEcCCCCEEEEEEC-------CCcEEEEeCCCCeEEEEeccCCCCeEEEEEcCCCCEEEEE-eCCCeEEEEEcC
Q 003236 556 SKVESCHFSPDGKLLATGGH-------DKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATS-SADRTVRVWDTE 627 (837)
Q Consensus 556 ~~V~sl~fSpdg~~Lasgs~-------Dg~I~VWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latg-s~Dg~I~IWDl~ 627 (837)
..+..++|+|+|++|++++. ++.|.+||..+++.+..+.. ...+.+++|+|++++++++ ..++.|.+||+.
T Consensus 41 ~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~ 119 (353)
T 3vgz_A 41 KGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHN-DLKPFGATINNTTQTLWFGNTVNSAVTAIDAK 119 (353)
T ss_dssp SSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEE-SSCCCSEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred cCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEec-CCCcceEEECCCCCEEEEEecCCCEEEEEeCC
Confidence 45889999999999888874 56899999999998888764 3457899999999966555 557999999999
Q ss_pred CCCceeEEeecccc---------ceEEEEEcCCCCeEEEEE-eCCCcEEEEECCCCeeeeEEe-cCCCeeEEEEecCCCE
Q 003236 628 NPDYSLRTFTGHST---------TVMSLDFHPSKEDLLCSC-DNNSEIRYWSINNGSCAGVFK-CQSGATQMRFQPRLGR 696 (837)
Q Consensus 628 ~~~~~~~~~~~h~~---------~V~sl~fspdg~~llasg-s~Dg~I~vwDl~t~~~i~~~~-~~~~i~sl~~sp~g~~ 696 (837)
+++. +..+..+.. .+.+++|+|+++.+++++ +.++.|.+||+.+++.+..+. ....+.+++|+|++++
T Consensus 120 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~dg~~ 198 (353)
T 3vgz_A 120 TGEV-KGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQNTGKMSTGLALDSEGKR 198 (353)
T ss_dssp TCCE-EEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEECCCCTTCCCCEEETTTTE
T ss_pred CCee-EEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEecCCCCccceEEECCCCCE
Confidence 8764 444444332 278899999998777666 457899999999999998887 4556889999999999
Q ss_pred EEEEEcCCeEEEEECCCCeEEEEEcC----CCCCEEEEEEcCCCCEEEEEe--CCeEEEEEcCCCCCceeEEEeecCCCc
Q 003236 697 ILAAAIENYISILDVETQVCRLKLQG----HKNQVHSVCWNTSGEYLASVS--DELVRVWSIGSGSKGECIHELSCTGNK 770 (837)
Q Consensus 697 llags~dg~I~iwDl~s~~~~~~l~~----h~~~V~sl~~spdg~~Lasgs--Dg~I~IwDl~s~~~~~~i~~~~~~~~~ 770 (837)
+++++.++.|.+||+.+++.+..+.. +...+.+++|+|++++|+++. ++.|.+||+.++ +.+..+....
T Consensus 199 l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~---~~~~~~~~~~-- 273 (353)
T 3vgz_A 199 LYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNG---NILAKVAAPE-- 273 (353)
T ss_dssp EEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTC---CEEEEEECSS--
T ss_pred EEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCC---cEEEEEEcCC--
Confidence 99999999999999999988877764 556788999999999887776 589999999887 4455544333
Q ss_pred eEEEEEeCCCCEEEEEE-cCCeEEEEECCCCcEEEeccCCCCeeEEEEeCCCCEEEEEECC
Q 003236 771 FHSCVFHPTFPSLLVIG-CYETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHD 830 (837)
Q Consensus 771 I~sv~fspdg~~L~sgs-~dg~I~IwDl~s~~~~~l~~h~~~V~sla~spdg~~LaSgs~D 830 (837)
...++|+|+++++++++ .++.|.+||+.+++.+........+.+++|+|++++|+++..+
T Consensus 274 ~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~ 334 (353)
T 3vgz_A 274 SLAVLFNPARNEAYVTHRQAGKVSVIDAKSYKVVKTFDTPTHPNSLALSADGKTLYVSVKQ 334 (353)
T ss_dssp CCCEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEEECCSEEEEEEECTTSCEEEEEEEC
T ss_pred CceEEECCCCCEEEEEECCCCeEEEEECCCCeEEEEEecCCCCCeEEEcCCCCEEEEEEcc
Confidence 25689999999887777 5789999999999988555555678999999999977766654
|
| >3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans} | Back alignment and structure |
|---|
Probab=99.93 E-value=4.4e-23 Score=223.64 Aligned_cols=274 Identities=7% Similarity=0.133 Sum_probs=206.9
Q ss_pred EEEcCCCCE-EEEEECCCcEEEEeCCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeC-CCeEEEEEcCCCCceeEEeec
Q 003236 561 CHFSPDGKL-LATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA-DRTVRVWDTENPDYSLRTFTG 638 (837)
Q Consensus 561 l~fSpdg~~-Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~-Dg~I~IWDl~~~~~~~~~~~~ 638 (837)
..|.+++.+ +++++.++.|.+||+.+++.+..+..+...+ +++|+|++++|++++. ++.|++||+.+++.....+..
T Consensus 3 ~~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~ 81 (331)
T 3u4y_A 3 AMFQTTSNFGIVVEQHLRRISFFSTDTLEILNQITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQE 81 (331)
T ss_dssp ----CCCCEEEEEEGGGTEEEEEETTTCCEEEEEECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEEEE
T ss_pred eeEcCCCCEEEEEecCCCeEEEEeCcccceeeeEEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEeccc
Confidence 345665554 6777889999999999999988887777777 9999999997777666 899999999987753556666
Q ss_pred cccceEEEEEcCCCCeEEEEEeCC-C--cEEEEECCCCeeeeEEecCCCeeEEEEecCCCEEEEEEc-CCe-EEEEECCC
Q 003236 639 HSTTVMSLDFHPSKEDLLCSCDNN-S--EIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAI-ENY-ISILDVET 713 (837)
Q Consensus 639 h~~~V~sl~fspdg~~llasgs~D-g--~I~vwDl~t~~~i~~~~~~~~i~sl~~sp~g~~llags~-dg~-I~iwDl~s 713 (837)
+...+.+++|+|++..++ ++..+ + .|++||+.+++.+..+.......+++|+|+++++++++. ++. |.+|++..
T Consensus 82 ~~~~~~~~~~s~dg~~l~-~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~ 160 (331)
T 3u4y_A 82 GQSSMADVDITPDDQFAV-TVTGLNHPFNMQSYSFLKNKFISTIPIPYDAVGIAISPNGNGLILIDRSSANTVRRFKIDA 160 (331)
T ss_dssp CSSCCCCEEECTTSSEEE-ECCCSSSSCEEEEEETTTTEEEEEEECCTTEEEEEECTTSSCEEEEEETTTTEEEEEEECT
T ss_pred CCCCccceEECCCCCEEE-EecCCCCcccEEEEECCCCCeEEEEECCCCccceEECCCCCEEEEEecCCCceEEEEEECC
Confidence 666666699999988766 44444 3 899999999999998888888899999999987766654 477 99999875
Q ss_pred CeEE----EEEcCCCCCEEEEEEcCCCCEEEEEe--CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEE
Q 003236 714 QVCR----LKLQGHKNQVHSVCWNTSGEYLASVS--DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIG 787 (837)
Q Consensus 714 ~~~~----~~l~~h~~~V~sl~~spdg~~Lasgs--Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fspdg~~L~sgs 787 (837)
...+ .........+.+++|+|+|++|+++. ++.|++||+.++.....+..+.. ...+..++|+|++++|++++
T Consensus 161 ~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~~-~~~~~~~~~spdg~~l~v~~ 239 (331)
T 3u4y_A 161 DGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENITLLNAVGT-NNLPGTIVVSRDGSTVYVLT 239 (331)
T ss_dssp TCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCEEEEEEEC-SSCCCCEEECTTSSEEEEEC
T ss_pred CCcEeecCCccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcccceeeeccC-CCCCceEEECCCCCEEEEEE
Confidence 3222 12223456689999999999766655 78999999988743222555553 46678899999999887776
Q ss_pred c-CCeEEEEECCCCcEE---EeccC----CC---CeeEEEEeCCCCEEEEEEC-CCcEEEeC
Q 003236 788 C-YETLELWNMTENKTL---TLSAH----DK---LVSSLAASTVNGMVASASH-DKCVKIWK 837 (837)
Q Consensus 788 ~-dg~I~IwDl~s~~~~---~l~~h----~~---~V~sla~spdg~~LaSgs~-DG~I~IWd 837 (837)
. ++.|.+||+.+++.. .+..+ .. .+..++|+||+++|++++. ++.|.|||
T Consensus 240 ~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d 301 (331)
T 3u4y_A 240 ESTVDVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGANQMALNKTETKLFISANISRELKVFT 301 (331)
T ss_dssp SSEEEEEEEETTTTEEEEEEEEECCCCCCCGGGTTCCCEEECTTSSEEEEEETTTTEEEEEE
T ss_pred cCCCEEEEEECCCCceeeecccccccccCCCCcccccceEECCCCCEEEEecCCCCcEEEEE
Confidence 4 668999999998873 11111 22 2356899999998876654 56999996
|
| >2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A | Back alignment and structure |
|---|
Probab=99.92 E-value=1.7e-23 Score=227.24 Aligned_cols=252 Identities=10% Similarity=0.056 Sum_probs=179.2
Q ss_pred ccCCCeeeeEEEEecCCCCCeEEEEEcCCCCEEEEEEC-C---CcEEEEeCCCC----eEEEEeccCCCCeEEEEEcCCC
Q 003236 538 EVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGH-D---KKAVLWCTESF----TVKSTLEEHTQWITDVRFSPSL 609 (837)
Q Consensus 538 ~~~~g~~~~~~~~l~~H~~~V~sl~fSpdg~~Lasgs~-D---g~I~VWd~~t~----~~~~~l~~h~~~I~~l~fspdg 609 (837)
...++..++.++++..|..+|..|.|.||-.-|++..- . +.|+..-+... .....-.+|...|..+ +++
T Consensus 69 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~sla~spd~~~~~~~l~s~g~~~~v~~l---~~g 145 (356)
T 2w18_A 69 KALDAWQWEKLYTWHFAEVPVLQIVPVPDVYNLVCVALGNLEIREIRALFCSSDDESEKQVLLKSGNIKAVLGL---TKR 145 (356)
T ss_dssp EESSSSBEEEEEEEECCSSCEEEECCCTTCCSCEEEEECSSSEEEEEEECC------CCEEEEEEEEEEEEEEE---TTT
T ss_pred ccCCCccceeeEEEeccCceeEEEEEcCcccceeeeeeccccccceEEEEECCCccccccEEEeCCCeEEEEec---CCC
Confidence 33445566778888888888888888886543322211 1 11111111111 1111123344445444 456
Q ss_pred CEEEEEe--CCCeEEEEEcCCCCceeEEeeccccceEEEEEcC--CCCeEEEEEeCCCcEEEEECCCCeeeeEEecC---
Q 003236 610 SRLATSS--ADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHP--SKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ--- 682 (837)
Q Consensus 610 ~~Latgs--~Dg~I~IWDl~~~~~~~~~~~~h~~~V~sl~fsp--dg~~llasgs~Dg~I~vwDl~t~~~i~~~~~~--- 682 (837)
+++.+++ .|+.|++|++......+..+.+|...+..++|++ ....+|++++.|++|+|||+++++++.++..+
T Consensus 146 ~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~ 225 (356)
T 2w18_A 146 RLVSSSGTLSDQQVEVMTFAEDGGGKENQFLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSY 225 (356)
T ss_dssp EEEEEESSSTTCEEEEEEECTTSCEEEEEEECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC--
T ss_pred cEEEecccCCCCcEEEEEECCCCceeeeeccCCCceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCcc
Confidence 6555543 5999999999654445777888999999999998 22457889999999999999999999999742
Q ss_pred -CCeeEEEEecCCCEE------------EEEEcCCeEEEEECCCCeEEEEE-----cCCCCCEEEEEEcCCCCEEEEEe-
Q 003236 683 -SGATQMRFQPRLGRI------------LAAAIENYISILDVETQVCRLKL-----QGHKNQVHSVCWNTSGEYLASVS- 743 (837)
Q Consensus 683 -~~i~sl~~sp~g~~l------------lags~dg~I~iwDl~s~~~~~~l-----~~h~~~V~sl~~spdg~~Lasgs- 743 (837)
..+.+++|+|++..+ ++|+.|++|++||..+++.+..+ .+|...+.+..++ +.++++++
T Consensus 226 v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~l~v~~~~~p~Gh~~~~lsg~~s--g~~lASgS~ 303 (356)
T 2w18_A 226 QASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTTLSVGVMLYCLPPGQAGRFLEGDVK--DHCAAAILT 303 (356)
T ss_dssp -CCCEEEEEEETTEEEEEEC------------CCEEEEEEETTTTEEEEEEEECCCTTCCCCEEEEEEE--TTEEEEEET
T ss_pred eeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCCCEEEEEEEeeccCCCcceeEccccC--CCEEEEEcC
Confidence 357788999998876 45677899999999999887765 3676666555554 88899998
Q ss_pred CCeEEEEEcCCCCCceeEEEeecCCCceE-EEEEeCCCCEEEEEEcCCeEEEEEC
Q 003236 744 DELVRVWSIGSGSKGECIHELSCTGNKFH-SCVFHPTFPSLLVIGCYETLELWNM 797 (837)
Q Consensus 744 Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~-sv~fspdg~~L~sgs~dg~I~IwDl 797 (837)
|++|+|||+.++ +++.++.+|...+. .++|+|+|++|++|+.|++|+|||+
T Consensus 304 DgTIkIWDl~tG---k~l~tL~gH~~~vvs~vafSPDG~~LaSGS~D~TIklWd~ 355 (356)
T 2w18_A 304 SGTIAIWDLLLG---QCTALLPPVSDQHWSFVKWSGTDSHLLAGQKDGNIFVYHY 355 (356)
T ss_dssp TSCEEEEETTTC---SEEEEECCC--CCCCEEEECSSSSEEEEECTTSCEEEEEE
T ss_pred CCcEEEEECCCC---cEEEEecCCCCCeEEEEEECCCCCEEEEEECCCcEEEecC
Confidence 999999999998 78889988876655 5899999999999999999999995
|
| >1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1 | Back alignment and structure |
|---|
Probab=99.92 E-value=5.9e-23 Score=222.45 Aligned_cols=266 Identities=9% Similarity=0.129 Sum_probs=197.5
Q ss_pred EEEEEECCCcEEEEeCC-CC--eEEEEeccCCCCeEEEEEcCCCCEEEEEeCC-CeEEEEEcC--CCCce-eEEeecccc
Q 003236 569 LLATGGHDKKAVLWCTE-SF--TVKSTLEEHTQWITDVRFSPSLSRLATSSAD-RTVRVWDTE--NPDYS-LRTFTGHST 641 (837)
Q Consensus 569 ~Lasgs~Dg~I~VWd~~-t~--~~~~~l~~h~~~I~~l~fspdg~~Latgs~D-g~I~IWDl~--~~~~~-~~~~~~h~~ 641 (837)
++++++.|+.|++||+. ++ +.+..+ .|...+.+++|+|++++|++++.+ +.|.+|++. ++... +..+..+ .
T Consensus 7 l~~~~~~~~~v~~~~~~~~~~~~~~~~~-~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~-~ 84 (343)
T 1ri6_A 7 VYIASPESQQIHVWNLNHEGALTLTQVV-DVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALP-G 84 (343)
T ss_dssp EEEEEGGGTEEEEEEECTTSCEEEEEEE-ECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECS-S
T ss_pred EEEeCCCCCeEEEEEECCCCcEEEeeeE-ecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeeccccccC-C
Confidence 34444789999999985 33 333333 477789999999999999998887 999999998 44432 2334433 3
Q ss_pred ceEEEEEcCCCCeEEEEEeCCCcEEEEEC---CCCeeeeEEecCCCeeEEEEecCCCEEEEEE-cCCeEEEEECCC-CeE
Q 003236 642 TVMSLDFHPSKEDLLCSCDNNSEIRYWSI---NNGSCAGVFKCQSGATQMRFQPRLGRILAAA-IENYISILDVET-QVC 716 (837)
Q Consensus 642 ~V~sl~fspdg~~llasgs~Dg~I~vwDl---~t~~~i~~~~~~~~i~sl~~sp~g~~llags-~dg~I~iwDl~s-~~~ 716 (837)
.+.+++|+|++..+++++..++.|.+||+ ...+.+..+.....+.+++|+|+++++++++ .++.|.+||+.+ ++.
T Consensus 85 ~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~ 164 (343)
T 1ri6_A 85 SLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHL 164 (343)
T ss_dssp CCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCE
T ss_pred CCcEEEEcCCCCEEEEEecCCCeEEEEECCCCccccccccccCCCCceEEEECCCCCEEEEecCCCCEEEEEEecCCCce
Confidence 78999999999888777777899999999 4445555666667789999999999998888 789999999987 544
Q ss_pred EE----EEcC-CCCCEEEEEEcCCCCEEEEEe--CCeEEEEEcCCCC-CceeEEEee---cC---CCceEEEEEeCCCCE
Q 003236 717 RL----KLQG-HKNQVHSVCWNTSGEYLASVS--DELVRVWSIGSGS-KGECIHELS---CT---GNKFHSCVFHPTFPS 782 (837)
Q Consensus 717 ~~----~l~~-h~~~V~sl~~spdg~~Lasgs--Dg~I~IwDl~s~~-~~~~i~~~~---~~---~~~I~sv~fspdg~~ 782 (837)
.. .+.. ....+.+++|+|++++|++++ ++.|++||+.... ....+..+. .. ...+..++|+|++++
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~ 244 (343)
T 1ri6_A 165 VAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRH 244 (343)
T ss_dssp EEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSE
T ss_pred eeecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCCCE
Confidence 32 2232 345788999999999776654 8899999996421 112222222 11 235678999999998
Q ss_pred EEEEE-cCCeEEEEECC--CCc--EE-EeccCCCCeeEEEEeCCCCEEEEEE-CCCcEEEeC
Q 003236 783 LLVIG-CYETLELWNMT--ENK--TL-TLSAHDKLVSSLAASTVNGMVASAS-HDKCVKIWK 837 (837)
Q Consensus 783 L~sgs-~dg~I~IwDl~--s~~--~~-~l~~h~~~V~sla~spdg~~LaSgs-~DG~I~IWd 837 (837)
|++++ .++.|.+||+. ++. .+ .+..+. .+.+++|+|++++|++++ .|+.|.||+
T Consensus 245 l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~~~~v~v~~ 305 (343)
T 1ri6_A 245 LYACDRTASLITVFSVSEDGSVLSKEGFQPTET-QPRGFNVDHSGKYLIAAGQKSHHISVYE 305 (343)
T ss_dssp EEEEETTTTEEEEEEECTTSCCEEEEEEEECSS-SCCCEEECTTSSEEEEECTTTCEEEEEE
T ss_pred EEEEecCCCEEEEEEEcCCCCceEEeeeecCCC-ccceEEECCCCCEEEEecCCCCeEEEEE
Confidence 88666 67899999998 333 33 333343 489999999999888887 689999994
|
| >1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=4e-23 Score=242.10 Aligned_cols=268 Identities=9% Similarity=0.063 Sum_probs=214.9
Q ss_pred EEcCCCCEEEEEECCCcEEEEeCCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEc--CCCCceeEEeecc
Q 003236 562 HFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDT--ENPDYSLRTFTGH 639 (837)
Q Consensus 562 ~fSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl--~~~~~~~~~~~~h 639 (837)
+|+|++.++++++.|++|.+||..+++++.++..+.. +.+++|+||+++|++++.|++|++||+ .+.+ .+..+. +
T Consensus 144 ~~~p~~~~~vs~~~d~~V~v~D~~t~~~~~~i~~g~~-~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~-~~~~i~-~ 220 (543)
T 1nir_A 144 DLDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTGYA-VHISRMSASGRYLLVIGRDARIDMIDLWAKEPT-KVAEIK-I 220 (543)
T ss_dssp CCCGGGEEEEEEGGGTEEEEEETTTCCEEEEEECSTT-EEEEEECTTSCEEEEEETTSEEEEEETTSSSCE-EEEEEE-C
T ss_pred ccCCCCEEEEEEcCCCeEEEEECCCceEEEEEecCcc-cceEEECCCCCEEEEECCCCeEEEEECcCCCCc-EEEEEe-c
Confidence 3788999999999999999999999999999874433 899999999999999999999999999 6644 355555 4
Q ss_pred ccceEEEEEcC----CCCeEEEEEeCCCcEEEEECCCCeeeeEEecC------------CCeeEEEEecCCCEEEEEE-c
Q 003236 640 STTVMSLDFHP----SKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ------------SGATQMRFQPRLGRILAAA-I 702 (837)
Q Consensus 640 ~~~V~sl~fsp----dg~~llasgs~Dg~I~vwDl~t~~~i~~~~~~------------~~i~sl~~sp~g~~llags-~ 702 (837)
...+..++|+| +++.+++++..++.|.+||..+++++..+... ..+..+.+++++..+++.. .
T Consensus 221 g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~ 300 (543)
T 1nir_A 221 GIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKE 300 (543)
T ss_dssp CSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETT
T ss_pred CCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEEEEEECC
Confidence 56689999999 99877766667999999999999998887642 2578999999887766554 5
Q ss_pred CCeEEEEECCCCeEEE--EEcCCCCCEEEEEEcCCCCEEEEEe--CCeEEEEEcCCCCCceeEEEeec----CCCceEEE
Q 003236 703 ENYISILDVETQVCRL--KLQGHKNQVHSVCWNTSGEYLASVS--DELVRVWSIGSGSKGECIHELSC----TGNKFHSC 774 (837)
Q Consensus 703 dg~I~iwDl~s~~~~~--~l~~h~~~V~sl~~spdg~~Lasgs--Dg~I~IwDl~s~~~~~~i~~~~~----~~~~I~sv 774 (837)
++.|.+||+.+.+.+. .+. +...+.+++|+|++++|++++ +++|.+||+.++ +++..+.. |......+
T Consensus 301 ~g~i~vvd~~~~~~l~~~~i~-~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg---~l~~~i~~g~~ph~g~g~~~ 376 (543)
T 1nir_A 301 TGKVLLVNYKDIDNLTVTSIG-AAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDR---RLSALVDVGKTPHPGRGANF 376 (543)
T ss_dssp TTEEEEEECTTSSSCEEEEEE-CCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTT---EEEEEEECSSSBCCTTCEEE
T ss_pred CCeEEEEEecCCCcceeEEec-cCcCccCceECCCCCEEEEEecCCCeEEEEECCCC---eEEEeeccCCCCCCCCCccc
Confidence 7899999998764332 443 567788999999999877665 889999999988 56666553 43333333
Q ss_pred EEeCCCCEEEEEE--cCCeEEEEECCC-------CcEE-EeccCCCCeeEEEEeCCCCEEEEEE-------CCCcEEEeC
Q 003236 775 VFHPTFPSLLVIG--CYETLELWNMTE-------NKTL-TLSAHDKLVSSLAASTVNGMVASAS-------HDKCVKIWK 837 (837)
Q Consensus 775 ~fspdg~~L~sgs--~dg~I~IwDl~s-------~~~~-~l~~h~~~V~sla~spdg~~LaSgs-------~DG~I~IWd 837 (837)
++|++..+++.+ .+++|.+||+.+ ++++ ++..|...+..++|+|++++|++++ .+++|.|||
T Consensus 377 -~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d 455 (543)
T 1nir_A 377 -VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFD 455 (543)
T ss_dssp -EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCCEEEECCTTCSSHHHHTCEEEEE
T ss_pred -CCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcCCCCceEEEcCCCCCcEEEecCCCCCcccCceEEEEE
Confidence 578754454444 478999999988 7776 7778888899999999999999987 277999997
|
| >2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia} | Back alignment and structure |
|---|
Probab=99.92 E-value=3e-23 Score=251.06 Aligned_cols=275 Identities=14% Similarity=0.091 Sum_probs=213.6
Q ss_pred CCCeEEEEEcCCCCEEEEEEC-CC-----cEEEEeCCCCeEEEEeccCCC------------------------CeEEEE
Q 003236 555 TSKVESCHFSPDGKLLATGGH-DK-----KAVLWCTESFTVKSTLEEHTQ------------------------WITDVR 604 (837)
Q Consensus 555 ~~~V~sl~fSpdg~~Lasgs~-Dg-----~I~VWd~~t~~~~~~l~~h~~------------------------~I~~l~ 604 (837)
...|.+++|||||++|++++. |+ .|++||+.+++....+..+.. .|.+++
T Consensus 36 ~~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 115 (741)
T 2ecf_A 36 GPTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQ 115 (741)
T ss_dssp CCCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCCE
T ss_pred CCCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcceeE
Confidence 456999999999999999998 88 899999999988777765443 388999
Q ss_pred EcCCCCEEEEEeCCCeEEEEEcCCCC-ceeEEeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeeEEecCC
Q 003236 605 FSPSLSRLATSSADRTVRVWDTENPD-YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQS 683 (837)
Q Consensus 605 fspdg~~Latgs~Dg~I~IWDl~~~~-~~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~~~ 683 (837)
|+|||++|++++. +.|++||+.++. .....+..|...+.+++|+|||+.+++ ++ ++.|++||+.+++.........
T Consensus 116 ~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~-~~-~~~i~~~d~~~g~~~~~~~~~~ 192 (741)
T 2ecf_A 116 WSPDAQRLLFPLG-GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSF-IR-GRNLWVIDLASGRQMQLTADGS 192 (741)
T ss_dssp ECTTSSEEEEEET-TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEE-EE-TTEEEEEETTTTEEEECCCCCC
T ss_pred ECCCCCEEEEEeC-CcEEEEECCCCCcceEEEcccCCcccccccCCCCCCEEEE-Ee-CCcEEEEecCCCCEEEeccCCc
Confidence 9999999999986 999999999762 014556778888999999999986654 44 5689999999887765544322
Q ss_pred C-----------------eeEEEEecCCCEEEEEEcCC---------------------------------eEEEEECCC
Q 003236 684 G-----------------ATQMRFQPRLGRILAAAIEN---------------------------------YISILDVET 713 (837)
Q Consensus 684 ~-----------------i~sl~~sp~g~~llags~dg---------------------------------~I~iwDl~s 713 (837)
. +..+.|+|++++|++++.|+ .|.+||+.+
T Consensus 193 ~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d~~~ 272 (741)
T 2ecf_A 193 TTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVISPAE 272 (741)
T ss_dssp SSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEECSST
T ss_pred cceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEEECCC
Confidence 2 47899999999999988765 789999988
Q ss_pred -CeEEEEEc--CCCCCEEEEEEcCCCCEEEEEe------CCeEEEEEcCCCCCceeEEEeecCCC----ceEEEEEeCCC
Q 003236 714 -QVCRLKLQ--GHKNQVHSVCWNTSGEYLASVS------DELVRVWSIGSGSKGECIHELSCTGN----KFHSCVFHPTF 780 (837)
Q Consensus 714 -~~~~~~l~--~h~~~V~sl~~spdg~~Lasgs------Dg~I~IwDl~s~~~~~~i~~~~~~~~----~I~sv~fspdg 780 (837)
++...... .|...+.+++| |||++|+++. +..|++||+.++. +...+..+.. .+..++|+|||
T Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~---~~~~~~~~~~~~~~~~~~~~~spdg 348 (741)
T 2ecf_A 273 QAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQ---QRVLAHETSPTWVPLHNSLRFLDDG 348 (741)
T ss_dssp TCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCC---EEEEEEEECSSCCCCCSCCEECTTS
T ss_pred CCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCc---eEEEEEcCCCCcCCcCCceEECCCC
Confidence 76554433 37778999999 9999988764 3479999999873 3333333332 34678999999
Q ss_pred CEEEEEEcCCeEEEEEC--CCCcEEEeccCCCCeeEE-EEeCCCCEEEE-EECCC--cEEEeC
Q 003236 781 PSLLVIGCYETLELWNM--TENKTLTLSAHDKLVSSL-AASTVNGMVAS-ASHDK--CVKIWK 837 (837)
Q Consensus 781 ~~L~sgs~dg~I~IwDl--~s~~~~~l~~h~~~V~sl-a~spdg~~LaS-gs~DG--~I~IWd 837 (837)
+++++++.++.+.||.+ ..+ ...+..|...|..+ +|+|+++.|+. ++.|+ .++||+
T Consensus 349 ~~~~~~~~~g~~~l~~~~~~~~-~~~l~~~~~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~ 410 (741)
T 2ecf_A 349 SILWSSERTGFQHLYRIDSKGK-AAALTHGNWSVDELLAVDEKAGLAYFRAGIESARESQIYA 410 (741)
T ss_dssp CEEEEECTTSSCEEEEECSSSC-EEESCCSSSCEEEEEEEETTTTEEEEEECSSCTTCBEEEE
T ss_pred eEEEEecCCCccEEEEEcCCCC-eeeeeecceEEEeEeEEeCCCCEEEEEEeCCCCceEEEEE
Confidence 98888888886666654 444 55777888888887 59999987754 44555 888984
|
| >2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.91 E-value=7.8e-23 Score=215.49 Aligned_cols=252 Identities=11% Similarity=0.097 Sum_probs=196.2
Q ss_pred EECCCcEEEEeCCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCC-CCceeEEeecc-ccceEEEEEcC
Q 003236 573 GGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTEN-PDYSLRTFTGH-STTVMSLDFHP 650 (837)
Q Consensus 573 gs~Dg~I~VWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~-~~~~~~~~~~h-~~~V~sl~fsp 650 (837)
++.|+.|++||+.+++... +..|...|.+++|+|++++|++++ ++.|++||+.+ ++. ......+ ...|.+++|+|
T Consensus 18 ~~~~~~i~~~d~~~~~~~~-~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~-~~~~~~~~~~~~~~~~~sp 94 (297)
T 2ojh_A 18 GSMRSSIEIFNIRTRKMRV-VWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSP-EKVDTGFATICNNDHGISP 94 (297)
T ss_dssp CCCCEEEEEEETTTTEEEE-EEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSC-EECCCTTCCCBCSCCEECT
T ss_pred CCcceeEEEEeCCCCceee-eccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCc-eEeccccccccccceEECC
Confidence 4578999999999988764 446889999999999999999986 78999999998 654 4444444 47889999999
Q ss_pred CCCeEEEEEe-C--CCcEEEEECCCCeeeeEEecCCCeeEEEEecCCCEEE-EEEcCCeEEEEEC--CCCeEEEEEcCCC
Q 003236 651 SKEDLLCSCD-N--NSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRIL-AAAIENYISILDV--ETQVCRLKLQGHK 724 (837)
Q Consensus 651 dg~~llasgs-~--Dg~I~vwDl~t~~~i~~~~~~~~i~sl~~sp~g~~ll-ags~dg~I~iwDl--~s~~~~~~l~~h~ 724 (837)
++..+++++. . ...|++|++.++. ...+.....+..++|+|+++.++ ++..++.+.+|++ .++. ...+..+.
T Consensus 95 dg~~l~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~ 172 (297)
T 2ojh_A 95 DGALYAISDKVEFGKSAIYLLPSTGGT-PRLMTKNLPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGV-ETRLTHGE 172 (297)
T ss_dssp TSSEEEEEECTTTSSCEEEEEETTCCC-CEECCSSSSEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCC-EEECCCSS
T ss_pred CCCEEEEEEeCCCCcceEEEEECCCCc-eEEeecCCCccceEECCCCCEEEEEECCCCceEEEEEECCCCc-ceEcccCC
Confidence 9886665442 2 2455555666555 34444455688999999999887 6778898888885 3343 45566688
Q ss_pred CCEEEEEEcCCCCEEEEEe--CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcC-----------Ce
Q 003236 725 NQVHSVCWNTSGEYLASVS--DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCY-----------ET 791 (837)
Q Consensus 725 ~~V~sl~~spdg~~Lasgs--Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fspdg~~L~sgs~d-----------g~ 791 (837)
..+.+++|+|++++|++++ ++.++||++.... ..+..+..+...+..++|+|++++|++++.+ ..
T Consensus 173 ~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~--~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~ 250 (297)
T 2ojh_A 173 GRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDG--SSVERITDSAYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVR 250 (297)
T ss_dssp SCEEEEEECTTSSEEEEEECTTSSCEEEEEETTS--SCEEECCCCSEEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEE
T ss_pred CccccceECCCCCEEEEEecCCCCccEEEECCCC--CCcEEEecCCcccCCeEECCCCCEEEEEEcCCCCCcccccCceE
Confidence 8999999999999887665 7889999986322 3455666677788999999999999988876 46
Q ss_pred EEEEECCCCcEE---EeccCCCCeeEEEEeCCCCEEEEEECCC
Q 003236 792 LELWNMTENKTL---TLSAHDKLVSSLAASTVNGMVASASHDK 831 (837)
Q Consensus 792 I~IwDl~s~~~~---~l~~h~~~V~sla~spdg~~LaSgs~DG 831 (837)
|++||+.+++.. .+..|...|.+++|+|++++|++++.|.
T Consensus 251 l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~ 293 (297)
T 2ojh_A 251 VQLMDMDGGNVETLFDLFGGQGTMNSPNWSPDGDEFAYVRYFP 293 (297)
T ss_dssp EEEEETTSCSCEEEEEEEESTTTSCSCCBCTTSSEEEEEEECC
T ss_pred EEEEecCCCCceeeeccCCCCcccccceECCCCCEEEEEEecc
Confidence 999999988754 3447888999999999999998887664
|
| >2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia} | Back alignment and structure |
|---|
Probab=99.91 E-value=1.2e-22 Score=245.83 Aligned_cols=272 Identities=11% Similarity=0.065 Sum_probs=205.0
Q ss_pred CeEEEEEcCCCCEEEEEECCCcEEEEeCCCCe--EEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeE
Q 003236 557 KVESCHFSPDGKLLATGGHDKKAVLWCTESFT--VKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLR 634 (837)
Q Consensus 557 ~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~--~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~~~~~~~ 634 (837)
.|.+++|||||++|++++. +.|++||+.++. ....+..|...+.+++|+|||++|++++ ++.|++||+.++.. ..
T Consensus 110 ~v~~~~~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~-~~~i~~~d~~~g~~-~~ 186 (741)
T 2ecf_A 110 GIVDYQWSPDAQRLLFPLG-GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIR-GRNLWVIDLASGRQ-MQ 186 (741)
T ss_dssp ESCCCEECTTSSEEEEEET-TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEEEE-TTEEEEEETTTTEE-EE
T ss_pred CcceeEECCCCCEEEEEeC-CcEEEEECCCCCcceEEEcccCCcccccccCCCCCCEEEEEe-CCcEEEEecCCCCE-EE
Confidence 4889999999999999986 999999998873 3445667888999999999999999987 46899999987553 33
Q ss_pred Eeeccccc----------------eEEEEEcCCCCeEEEEEeCCC--------------------------------cEE
Q 003236 635 TFTGHSTT----------------VMSLDFHPSKEDLLCSCDNNS--------------------------------EIR 666 (837)
Q Consensus 635 ~~~~h~~~----------------V~sl~fspdg~~llasgs~Dg--------------------------------~I~ 666 (837)
....+... +.+++|+|||+.++++...++ .|+
T Consensus 187 ~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~ 266 (741)
T 2ecf_A 187 LTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLG 266 (741)
T ss_dssp CCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEE
T ss_pred eccCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEE
Confidence 33333322 478999999987775544221 789
Q ss_pred EEECCC-CeeeeEEe---cCCCeeEEEEecCCCEEEEEEc-----CCeEEEEECCCCeEEEEEcCCCC----CEEEEEEc
Q 003236 667 YWSINN-GSCAGVFK---CQSGATQMRFQPRLGRILAAAI-----ENYISILDVETQVCRLKLQGHKN----QVHSVCWN 733 (837)
Q Consensus 667 vwDl~t-~~~i~~~~---~~~~i~sl~~sp~g~~llags~-----dg~I~iwDl~s~~~~~~l~~h~~----~V~sl~~s 733 (837)
+||+.+ ++...... +...+..++| |+++.|++++. +..|++||+.++++...+..+.. .+.+++|+
T Consensus 267 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~s 345 (741)
T 2ecf_A 267 VISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSPTWVPLHNSLRFL 345 (741)
T ss_dssp EECSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECSSCCCCCSCCEEC
T ss_pred EEECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCCCcCCcCCceEEC
Confidence 999998 77655432 3345889999 99999998775 46899999999987777665543 45689999
Q ss_pred CCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEE-EEeCCCCEEEEEEcCC---eEEEEECCC-CcEE-Eec
Q 003236 734 TSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSC-VFHPTFPSLLVIGCYE---TLELWNMTE-NKTL-TLS 806 (837)
Q Consensus 734 pdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv-~fspdg~~L~sgs~dg---~I~IwDl~s-~~~~-~l~ 806 (837)
|||+++++++ |+.++||.+.... . ...+..+...+..+ .|+|+++.|++.+.++ .++||++.. +... .+.
T Consensus 346 pdg~~~~~~~~~g~~~l~~~~~~~--~-~~~l~~~~~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~~g~~~~~l~ 422 (741)
T 2ecf_A 346 DDGSILWSSERTGFQHLYRIDSKG--K-AAALTHGNWSVDELLAVDEKAGLAYFRAGIESARESQIYAVPLQGGQPQRLS 422 (741)
T ss_dssp TTSCEEEEECTTSSCEEEEECSSS--C-EEESCCSSSCEEEEEEEETTTTEEEEEECSSCTTCBEEEEEETTCCCCEECC
T ss_pred CCCeEEEEecCCCccEEEEEcCCC--C-eeeeeecceEEEeEeEEeCCCCEEEEEEeCCCCceEEEEEEEcCCCCeeecc
Confidence 9999888877 8888888776322 3 56666777778887 5999999887666544 788998753 4433 443
Q ss_pred cCCCCeeEEEEeCCCCEEEEEECC----CcEEEe
Q 003236 807 AHDKLVSSLAASTVNGMVASASHD----KCVKIW 836 (837)
Q Consensus 807 ~h~~~V~sla~spdg~~LaSgs~D----G~I~IW 836 (837)
. ...+..++|+||+++|+....+ ..+.+|
T Consensus 423 ~-~~~~~~~~~spdg~~l~~~~~~~~~p~~~~l~ 455 (741)
T 2ecf_A 423 K-APGMHSASFARNASVYVDSWSNNSTPPQIELF 455 (741)
T ss_dssp C-SCSEEEEEECTTSSEEEEEEEETTEEEEEEEE
T ss_pred c-CCCceEEEECCCCCEEEEEecCCCCCCeEEEE
Confidence 3 6778999999999988766543 345555
|
| >1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1 | Back alignment and structure |
|---|
Probab=99.91 E-value=8e-22 Score=213.52 Aligned_cols=295 Identities=11% Similarity=0.080 Sum_probs=207.0
Q ss_pred eEEcccCCCceEEeecCCCCCCCCccccccccCCCeeeeEEEEecCCCCCeEEEEEcCCCCEEEEEECC-CcEEEEeCC-
Q 003236 508 FVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHD-KKAVLWCTE- 585 (837)
Q Consensus 508 ~v~~Gs~D~~v~~w~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~H~~~V~sl~fSpdg~~Lasgs~D-g~I~VWd~~- 585 (837)
++++++.|+.|.+|...... ....+..+ .|...+.+++|+|+|++|++++.+ +.|.+|++.
T Consensus 7 l~~~~~~~~~v~~~~~~~~~----------------~~~~~~~~-~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~ 69 (343)
T 1ri6_A 7 VYIASPESQQIHVWNLNHEG----------------ALTLTQVV-DVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAP 69 (343)
T ss_dssp EEEEEGGGTEEEEEEECTTS----------------CEEEEEEE-ECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECT
T ss_pred EEEeCCCCCeEEEEEECCCC----------------cEEEeeeE-ecCCCCceEEECCCCCEEEEeecCCCeEEEEEecC
Confidence 34444678889999653210 11122222 466789999999999999988886 999999987
Q ss_pred -CCe--EEEEeccCCCCeEEEEEcCCCCEEEEEeC-CCeEEEEEcCCCC--ceeEEeeccccceEEEEEcCCCCeEEEEE
Q 003236 586 -SFT--VKSTLEEHTQWITDVRFSPSLSRLATSSA-DRTVRVWDTENPD--YSLRTFTGHSTTVMSLDFHPSKEDLLCSC 659 (837)
Q Consensus 586 -t~~--~~~~l~~h~~~I~~l~fspdg~~Latgs~-Dg~I~IWDl~~~~--~~~~~~~~h~~~V~sl~fspdg~~llasg 659 (837)
+++ .+..+..+. .+.+++|+|++++|++++. ++.|.+||+.++. ..+..+. ....+.+++|+|++..+++++
T Consensus 70 ~~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~-~~~~~~~~~~s~dg~~l~~~~ 147 (343)
T 1ri6_A 70 DDGALTFAAESALPG-SLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVE-GLDGCHSANISPDNRTLWVPA 147 (343)
T ss_dssp TTCCEEEEEEEECSS-CCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEEC-CCTTBCCCEECTTSSEEEEEE
T ss_pred CCCceeeccccccCC-CCcEEEEcCCCCEEEEEecCCCeEEEEECCCCcccccccccc-CCCCceEEEECCCCCEEEEec
Confidence 444 344554444 7899999999998877765 8899999995222 1233333 334689999999998777666
Q ss_pred eCCCcEEEEECCC-CeeeeE----Ee--cCCCeeEEEEecCCCEEEEEE-cCCeEEEEECCC--CeE--EEEEcC---C-
Q 003236 660 DNNSEIRYWSINN-GSCAGV----FK--CQSGATQMRFQPRLGRILAAA-IENYISILDVET--QVC--RLKLQG---H- 723 (837)
Q Consensus 660 s~Dg~I~vwDl~t-~~~i~~----~~--~~~~i~sl~~sp~g~~llags-~dg~I~iwDl~s--~~~--~~~l~~---h- 723 (837)
..++.|++||+.+ ++.... +. ....+..++|+|+++++++++ .++.|.+||+.. ++. ...+.. .
T Consensus 148 ~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~ 227 (343)
T 1ri6_A 148 LKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENF 227 (343)
T ss_dssp GGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTC
T ss_pred CCCCEEEEEEecCCCceeeecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccc
Confidence 5899999999987 654322 22 234688899999999887776 689999999953 322 223321 1
Q ss_pred --CCCEEEEEEcCCCCEEEEEe--CCeEEEEEcCCC-CCceeEEEeecCCCceEEEEEeCCCCEEEEEE-cCCeEEEE--
Q 003236 724 --KNQVHSVCWNTSGEYLASVS--DELVRVWSIGSG-SKGECIHELSCTGNKFHSCVFHPTFPSLLVIG-CYETLELW-- 795 (837)
Q Consensus 724 --~~~V~sl~~spdg~~Lasgs--Dg~I~IwDl~s~-~~~~~i~~~~~~~~~I~sv~fspdg~~L~sgs-~dg~I~Iw-- 795 (837)
...+.+++|+|++++|+++. ++.|++||+... .....+..+..+.. +..++|+|++++|++++ .++.|.+|
T Consensus 228 ~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~-~~~~~~s~dg~~l~~~~~~~~~v~v~~~ 306 (343)
T 1ri6_A 228 SDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQ-PRGFNVDHSGKYLIAAGQKSHHISVYEI 306 (343)
T ss_dssp CSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSSS-CCCEEECTTSSEEEEECTTTCEEEEEEE
T ss_pred cccCCccceEECCCCCEEEEEecCCCEEEEEEEcCCCCceEEeeeecCCCc-cceEEECCCCCEEEEecCCCCeEEEEEE
Confidence 24677899999999887554 889999999842 12245555554444 88999999999999888 57899999
Q ss_pred ECCCCcEE--EeccCCCCeeEEEEeCCCC
Q 003236 796 NMTENKTL--TLSAHDKLVSSLAASTVNG 822 (837)
Q Consensus 796 Dl~s~~~~--~l~~h~~~V~sla~spdg~ 822 (837)
|..+++.. ..........+++|.++.+
T Consensus 307 d~~~g~~~~~~~~~~g~~p~~i~~~~~~~ 335 (343)
T 1ri6_A 307 VGEQGLLHEKGRYAVGQGPMWVVVNAHEG 335 (343)
T ss_dssp ETTTTEEEEEEEEECSSSCCEEEEEEEC-
T ss_pred cCCCceeeEccccccCCCCeeEEEEcccC
Confidence 45566543 2222335677888887654
|
| >1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B* | Back alignment and structure |
|---|
Probab=99.91 E-value=3.1e-22 Score=216.16 Aligned_cols=262 Identities=11% Similarity=0.067 Sum_probs=207.4
Q ss_pred CEEEEEECCCcEEEEeCCCCeEEEEeccCCC--CeEEEEEcCCCCEEE-EEeCCCeEEEEEcCCCCceeEEee-cc----
Q 003236 568 KLLATGGHDKKAVLWCTESFTVKSTLEEHTQ--WITDVRFSPSLSRLA-TSSADRTVRVWDTENPDYSLRTFT-GH---- 639 (837)
Q Consensus 568 ~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~--~I~~l~fspdg~~La-tgs~Dg~I~IWDl~~~~~~~~~~~-~h---- 639 (837)
++|++++.++.|.+||+.+++.+..+..... .+.+++|+|++++++ +++.++.|.+||+.+++. +..+. ++
T Consensus 2 ~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~-~~~~~~~~~~~~ 80 (337)
T 1pby_B 2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGET-LGRIDLSTPEER 80 (337)
T ss_dssp EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCE-EEEEECCBTTEE
T ss_pred cEEEEcCCCCeEEEEECCCCcEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCe-EeeEEcCCcccc
Confidence 4789999999999999999999887753322 588999999998765 555678999999988764 33333 22
Q ss_pred ccceEEEEEcCCCCeEEEEEe-----------CCCcEEEEECCCCeeeeEEecCCCeeEEEEecCCCEEEEEEcCCeEEE
Q 003236 640 STTVMSLDFHPSKEDLLCSCD-----------NNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISI 708 (837)
Q Consensus 640 ~~~V~sl~fspdg~~llasgs-----------~Dg~I~vwDl~t~~~i~~~~~~~~i~sl~~sp~g~~llags~dg~I~i 708 (837)
...+.+++|+|+++.++++.. .++.|.+||+.+++.+..+.....+.+++|+|++++++++ ++.|.+
T Consensus 81 ~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~--~~~i~~ 158 (337)
T 1pby_B 81 VKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPRQITMLAWARDGSKLYGL--GRDLHV 158 (337)
T ss_dssp EECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECCSSCCCEEECTTSSCEEEE--SSSEEE
T ss_pred cccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeCCCCcceeEECCCCCEEEEe--CCeEEE
Confidence 236788999999887665531 4799999999999988888877778899999999988887 789999
Q ss_pred EECCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEe--CC-----------------------eEEEEEcCCCCCceeEEE
Q 003236 709 LDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS--DE-----------------------LVRVWSIGSGSKGECIHE 763 (837)
Q Consensus 709 wDl~s~~~~~~l~~h~~~V~sl~~spdg~~Lasgs--Dg-----------------------~I~IwDl~s~~~~~~i~~ 763 (837)
||+.+++.+..+..+.. ...+.|+|++.+|+... ++ .|.+||+.++... ...
T Consensus 159 ~d~~~~~~~~~~~~~~~-~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~--~~~ 235 (337)
T 1pby_B 159 MDPEAGTLVEDKPIQSW-EAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMA--MRE 235 (337)
T ss_dssp EETTTTEEEEEECSTTT-TTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEE--EEE
T ss_pred EECCCCcEeeeeecccc-CCCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCce--Eee
Confidence 99999988877765431 11237899988766554 22 4689999887432 334
Q ss_pred eecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEEEeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 003236 764 LSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 837 (837)
Q Consensus 764 ~~~~~~~I~sv~fspdg~~L~sgs~dg~I~IwDl~s~~~~~l~~h~~~V~sla~spdg~~LaSgs~DG~I~IWd 837 (837)
+..+...+..++|+|++++++++ ++.|++||+.+++.+........+.+++|+|++++|++++.|+.|++||
T Consensus 236 ~~~~~~~~~~~~~s~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~i~v~d 307 (337)
T 1pby_B 236 VRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVPLPHSYYSVNVSTDGSTVWLGGALGDLAAYD 307 (337)
T ss_dssp EEECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEECSSCCCEEEECTTSCEEEEESBSSEEEEEE
T ss_pred cCCCCCceeeEEECCCCCEEEEe--CCeEEEEECCCCcCcceecCCCceeeEEECCCCCEEEEEcCCCcEEEEE
Confidence 45566778899999999998888 6899999999998875555556789999999999999999999999996
|
| >3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans} | Back alignment and structure |
|---|
Probab=99.91 E-value=1.2e-21 Score=212.40 Aligned_cols=292 Identities=11% Similarity=0.085 Sum_probs=211.6
Q ss_pred CCeEEcccCCCceEEeecCCCCCCCCccccccccCCCeeeeEEEEecCCCCCeEEEEEcCCCCEEEEEEC-CCcEEEEeC
Q 003236 506 DRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGH-DKKAVLWCT 584 (837)
Q Consensus 506 ~~~v~~Gs~D~~v~~w~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~H~~~V~sl~fSpdg~~Lasgs~-Dg~I~VWd~ 584 (837)
..++++++.++.|.+|..... .....+..+...+ +++|+|||++|++++. ++.|++||+
T Consensus 10 ~~~~v~~~~~~~v~~~d~~~~-------------------~~~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~ 69 (331)
T 3u4y_A 10 NFGIVVEQHLRRISFFSTDTL-------------------EILNQITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIET 69 (331)
T ss_dssp CEEEEEEGGGTEEEEEETTTC-------------------CEEEEEECCCCEE-EEEECSSSCEEEEEESTTCEEEEEEC
T ss_pred CEEEEEecCCCeEEEEeCccc-------------------ceeeeEEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEEC
Confidence 355677778888999855332 1123334455566 9999999997776665 889999999
Q ss_pred CCCeE-EEEeccCCCCeEEEEEcCCCCEEEEEeCCC---eEEEEEcCCCCceeEEeeccccceEEEEEcCCCCeEEEEEe
Q 003236 585 ESFTV-KSTLEEHTQWITDVRFSPSLSRLATSSADR---TVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCD 660 (837)
Q Consensus 585 ~t~~~-~~~l~~h~~~I~~l~fspdg~~Latgs~Dg---~I~IWDl~~~~~~~~~~~~h~~~V~sl~fspdg~~llasgs 660 (837)
.+++. ...+..+...+.+++|+|++++|+++..++ .|.+||+.+++. +..+.. ...+.+++|+|+++.+++++.
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~-~~~~~~-~~~~~~~~~spdg~~l~~~~~ 147 (331)
T 3u4y_A 70 QLEPPKVVAIQEGQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKF-ISTIPI-PYDAVGIAISPNGNGLILIDR 147 (331)
T ss_dssp SSSSCEEEEEEECSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEE-EEEEEC-CTTEEEEEECTTSSCEEEEEE
T ss_pred CCCceeEEecccCCCCccceEECCCCCEEEEecCCCCcccEEEEECCCCCe-EEEEEC-CCCccceEECCCCCEEEEEec
Confidence 99887 777777777666699999999999655553 999999987653 444443 445789999999988888877
Q ss_pred CCCc-EEEEECCCCeee-----eEEecCCCeeEEEEecCCCEEEEEE-cCCeEEEEECCCCeE---EEEEcCCCCCEEEE
Q 003236 661 NNSE-IRYWSINNGSCA-----GVFKCQSGATQMRFQPRLGRILAAA-IENYISILDVETQVC---RLKLQGHKNQVHSV 730 (837)
Q Consensus 661 ~Dg~-I~vwDl~t~~~i-----~~~~~~~~i~sl~~sp~g~~llags-~dg~I~iwDl~s~~~---~~~l~~h~~~V~sl 730 (837)
.++. |.+|++.....+ ..+.....+..++|+|+++++++++ .++.|.+||+.+++. +..+.. ...+.++
T Consensus 148 ~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~~-~~~~~~~ 226 (331)
T 3u4y_A 148 SSANTVRRFKIDADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENITLLNAVGT-NNLPGTI 226 (331)
T ss_dssp TTTTEEEEEEECTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCEEEEEEEC-SSCCCCE
T ss_pred CCCceEEEEEECCCCcEeecCCccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcccceeeeccC-CCCCceE
Confidence 7788 999999764332 2233356688999999999877776 478999999998876 767764 4667899
Q ss_pred EEcCCCCEEEEEe--CCeEEEEEcCCCCCceeEEEeecC----CC---ceEEEEEeCCCCEEEEEEcC-CeEEEEECCCC
Q 003236 731 CWNTSGEYLASVS--DELVRVWSIGSGSKGECIHELSCT----GN---KFHSCVFHPTFPSLLVIGCY-ETLELWNMTEN 800 (837)
Q Consensus 731 ~~spdg~~Lasgs--Dg~I~IwDl~s~~~~~~i~~~~~~----~~---~I~sv~fspdg~~L~sgs~d-g~I~IwDl~s~ 800 (837)
+|+|+|++|+++. ++.|.+||+.++.. ..+..+... .. ....++|+|++++|++++.+ +.|.+||+.+.
T Consensus 227 ~~spdg~~l~v~~~~~~~i~~~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~ 305 (331)
T 3u4y_A 227 VVSRDGSTVYVLTESTVDVFNFNQLSGTL-SFVKSFGHGLLIDPRPLFGANQMALNKTETKLFISANISRELKVFTISGK 305 (331)
T ss_dssp EECTTSSEEEEECSSEEEEEEEETTTTEE-EEEEEEECCCCCCCGGGTTCCCEEECTTSSEEEEEETTTTEEEEEETTSC
T ss_pred EECCCCCEEEEEEcCCCEEEEEECCCCce-eeecccccccccCCCCcccccceEECCCCCEEEEecCCCCcEEEEEecCC
Confidence 9999999887765 67899999988632 123333322 11 22458999999999877765 59999999887
Q ss_pred cEEEeccCCCCeeEEEEeCCC
Q 003236 801 KTLTLSAHDKLVSSLAASTVN 821 (837)
Q Consensus 801 ~~~~l~~h~~~V~sla~spdg 821 (837)
..-.+......-....++|+.
T Consensus 306 ~~~~~~~~~~~g~~~~~~~~~ 326 (331)
T 3u4y_A 306 VVGYVAGIEANGGIAICHPDK 326 (331)
T ss_dssp EEEECTTCCCBSCEEECCCC-
T ss_pred cccceecccccCCeEEECCcc
Confidence 665554444333334444543
|
| >2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.91 E-value=1.3e-22 Score=213.67 Aligned_cols=238 Identities=14% Similarity=0.111 Sum_probs=186.8
Q ss_pred EecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCC-CeEEEEeccC-CCCeEEEEEcCCCCEEEEEe--CCCeEEEEE
Q 003236 550 LIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES-FTVKSTLEEH-TQWITDVRFSPSLSRLATSS--ADRTVRVWD 625 (837)
Q Consensus 550 ~l~~H~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t-~~~~~~l~~h-~~~I~~l~fspdg~~Latgs--~Dg~I~IWD 625 (837)
.+..|...|.+++|+|||++|++++ ++.|++||+.+ ++....+..| ...|.+++|+|++++|++++ .++.+.||.
T Consensus 36 ~~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~l~~ 114 (297)
T 2ojh_A 36 VVWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEKVDTGFATICNNDHGISPDGALYAISDKVEFGKSAIYL 114 (297)
T ss_dssp EEEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEECCCTTCCCBCSCCEECTTSSEEEEEECTTTSSCEEEE
T ss_pred eeccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceEeccccccccccceEECCCCCEEEEEEeCCCCcceEEE
Confidence 4456788999999999999999987 78999999998 8777766665 47889999999999999998 334555555
Q ss_pred cCCCCceeEEeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEEC--CCCeeeeEEecCCCeeEEEEecCCCEEEEEEc-
Q 003236 626 TENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSI--NNGSCAGVFKCQSGATQMRFQPRLGRILAAAI- 702 (837)
Q Consensus 626 l~~~~~~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl--~t~~~i~~~~~~~~i~sl~~sp~g~~llags~- 702 (837)
++........+..+. .+.+++|+|++..++++++.++.+++|++ .++...........+.++.|+|++..+++++.
T Consensus 115 ~~~~~~~~~~~~~~~-~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~ 193 (297)
T 2ojh_A 115 LPSTGGTPRLMTKNL-PSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGVETRLTHGEGRNDGPDYSPDGRWIYFNSSR 193 (297)
T ss_dssp EETTCCCCEECCSSS-SEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCCEEECCCSSSCEEEEEECTTSSEEEEEECT
T ss_pred EECCCCceEEeecCC-CccceEECCCCCEEEEEECCCCceEEEEEECCCCcceEcccCCCccccceECCCCCEEEEEecC
Confidence 432222244444443 48999999999988888888998899885 44555444445677999999999998887774
Q ss_pred CCeEEEEECC-CCeEEEEEcCCCCCEEEEEEcCCCCEEEEEe-C-----------CeEEEEEcCCCCCceeEEEeecCCC
Q 003236 703 ENYISILDVE-TQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-D-----------ELVRVWSIGSGSKGECIHELSCTGN 769 (837)
Q Consensus 703 dg~I~iwDl~-s~~~~~~l~~h~~~V~sl~~spdg~~Lasgs-D-----------g~I~IwDl~s~~~~~~i~~~~~~~~ 769 (837)
++.+.+|++. .+..+..+..|...+.+++|+|++++|++++ + +.|++||+.++.. ..+..+..+..
T Consensus 194 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~-~~~~~~~~~~~ 272 (297)
T 2ojh_A 194 TGQMQIWRVRVDGSSVERITDSAYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNV-ETLFDLFGGQG 272 (297)
T ss_dssp TSSCEEEEEETTSSCEEECCCCSEEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSC-EEEEEEEESTT
T ss_pred CCCccEEEECCCCCCcEEEecCCcccCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCCc-eeeeccCCCCc
Confidence 8888999876 4556667777888899999999999998877 4 4699999987643 44555557788
Q ss_pred ceEEEEEeCCCCEEEEEEcCC
Q 003236 770 KFHSCVFHPTFPSLLVIGCYE 790 (837)
Q Consensus 770 ~I~sv~fspdg~~L~sgs~dg 790 (837)
.+..++|+|++++|++++.+.
T Consensus 273 ~~~~~~~spdg~~l~~~~~~~ 293 (297)
T 2ojh_A 273 TMNSPNWSPDGDEFAYVRYFP 293 (297)
T ss_dssp TSCSCCBCTTSSEEEEEEECC
T ss_pred ccccceECCCCCEEEEEEecc
Confidence 899999999999999888764
|
| >3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A | Back alignment and structure |
|---|
Probab=99.90 E-value=4.7e-22 Score=234.27 Aligned_cols=268 Identities=9% Similarity=0.041 Sum_probs=205.9
Q ss_pred CCCeEEEEEcCCCCEEEEEEC-CCcEEEEeCCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeC---CCeEEEEEcCC--
Q 003236 555 TSKVESCHFSPDGKLLATGGH-DKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA---DRTVRVWDTEN-- 628 (837)
Q Consensus 555 ~~~V~sl~fSpdg~~Lasgs~-Dg~I~VWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~---Dg~I~IWDl~~-- 628 (837)
..+|++++|+|||++||+++. ||++.||++++++.......+...|.+++|+|| +++++++. +....||.+..
T Consensus 21 ~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~~~lt~~~~~~~~~~~~spd-~~l~~~~~~~g~~~~~l~~~~~~~ 99 (582)
T 3o4h_A 21 AVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGETVKLNREPINSVLDPHYGVG-RVILVRDVSKGAEQHALFKVNTSR 99 (582)
T ss_dssp HSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTEEEECCSSCCSEECEECTTCS-EEEEEEECSTTSCCEEEEEEETTS
T ss_pred ccchheeecCCCCCeEEEEEccCCceeEEEEcCCCcEeeecccccccccccCCCC-eEEEEeccCCCCcceEEEEEeccC
Confidence 457999999999999999887 999999999777665444434368999999999 77777765 45556665543
Q ss_pred CCceeEEeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeeEEecCCCeeEEEEecCCCEEEEEEcC----C
Q 003236 629 PDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIE----N 704 (837)
Q Consensus 629 ~~~~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~~~~i~sl~~sp~g~~llags~d----g 704 (837)
..... .+..+ ..+...+|+|+++.++++.+.++.+.+||+.++++........ .+++|+|+|+.|++++.+ .
T Consensus 100 ~g~~~-~l~~~-~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~~~~--~~~~~spDG~~la~~~~~~~~~~ 175 (582)
T 3o4h_A 100 PGEEQ-RLEAV-KPMRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELARLPG--FGFVSDIRGDLIAGLGFFGGGRV 175 (582)
T ss_dssp TTCCE-ECTTS-CSBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEEESS--CEEEEEEETTEEEEEEEEETTEE
T ss_pred CCccc-cccCC-CCceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEEeecCCC--ceEEECCCCCEEEEEEEcCCCCe
Confidence 22222 23222 2344678888887766666556667799999998777666544 889999999999988876 7
Q ss_pred eEEEEECCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEe-CC--eEEEEEcCCCCCceeEEEeecCCCceEEEE------
Q 003236 705 YISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DE--LVRVWSIGSGSKGECIHELSCTGNKFHSCV------ 775 (837)
Q Consensus 705 ~I~iwDl~s~~~~~~l~~h~~~V~sl~~spdg~~Lasgs-Dg--~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~------ 775 (837)
.|++||+.+++.. .+..|...+.+++|+|||++|+++. ++ .|++||+.++ ... .+..+...+..++
T Consensus 176 ~i~~~d~~~g~~~-~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~---~~~-~~~~~~~~~~~~~~~~~~~ 250 (582)
T 3o4h_A 176 SLFTSNLSSGGLR-VFDSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDG---SVE-DLELPSKDFSSYRPTAITW 250 (582)
T ss_dssp EEEEEETTTCCCE-EECCSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTC---CEE-ECCCSCSHHHHHCCSEEEE
T ss_pred EEEEEcCCCCCce-EeecCCCccccceECCCCCEEEEccCCCeeEEEEEcCCCC---cEE-EccCCCcChhhhhhccccc
Confidence 8999999988755 5677888999999999999999766 77 8999999887 333 5556666666666
Q ss_pred --EeCCCCEEEEEEcCCeEEEEECCCCcEEEeccCCCCeeEEEEeCCCCEEEEEECCCc---EEEeC
Q 003236 776 --FHPTFPSLLVIGCYETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKC---VKIWK 837 (837)
Q Consensus 776 --fspdg~~L~sgs~dg~I~IwDl~s~~~~~l~~h~~~V~sla~spdg~~LaSgs~DG~---I~IWd 837 (837)
|+|||..+++++.++.+++|++ ++... .+.+.|.+++|+ +++++++++.+.. |++||
T Consensus 251 ~~~spdg~~~~~~~~~g~~~l~~~--g~~~~--~~~~~v~~~~~s-dg~~l~~~s~~~~p~~l~~~d 312 (582)
T 3o4h_A 251 LGYLPDGRLAVVARREGRSAVFID--GERVE--APQGNHGRVVLW-RGKLVTSHTSLSTPPRIVSLP 312 (582)
T ss_dssp EEECTTSCEEEEEEETTEEEEEET--TEEEC--CCSSEEEEEEEE-TTEEEEEEEETTEEEEEEEET
T ss_pred eeEcCCCcEEEEEEcCCcEEEEEE--CCeec--cCCCceEEEEec-CCEEEEEEcCCCCCCeEEEEc
Confidence 9999988888899999999999 66553 345678999999 9999999887743 66654
|
| >1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24 | Back alignment and structure |
|---|
Probab=99.90 E-value=9.7e-23 Score=245.74 Aligned_cols=275 Identities=13% Similarity=0.151 Sum_probs=206.5
Q ss_pred CeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEeccCCC---CeEEEEEcCCCCEEEEEeCC---------CeEEEE
Q 003236 557 KVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQ---WITDVRFSPSLSRLATSSAD---------RTVRVW 624 (837)
Q Consensus 557 ~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~---~I~~l~fspdg~~Latgs~D---------g~I~IW 624 (837)
.+.+++|+|||+++++ +.||+|++||+.+++....+..|.. .|.+++|+|||++|++++.+ +.|++|
T Consensus 18 ~~~~~~~spdg~~~~~-~~dg~i~~~d~~~g~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~ 96 (723)
T 1xfd_A 18 HDPEAKWISDTEFIYR-EQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLS 96 (723)
T ss_dssp CCCCCCBSSSSCBCCC-CSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEE
T ss_pred cccccEEcCCCcEEEE-eCCCCEEEEECCCCcEEEEeccccccccccceEEECCCCCEEEEEecCccceeecceeeEEEE
Confidence 4678999999998776 7899999999999988888877765 49999999999999999874 788999
Q ss_pred EcCCCCce-eEEeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeeEEec-CCC------------------
Q 003236 625 DTENPDYS-LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSG------------------ 684 (837)
Q Consensus 625 Dl~~~~~~-~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~-~~~------------------ 684 (837)
|+.+++.. +....+|...+.+++|+|||+.++++. ++.|++||+.+++....... ...
T Consensus 97 d~~~~~~~~l~~~~~~~~~~~~~~~SPdG~~la~~~--~~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~ 174 (723)
T 1xfd_A 97 KIPHGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIF--ENNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKT 174 (723)
T ss_dssp ESSSCCCEECCCTTCCSCCCSBCCBCSSTTCEEEEE--TTEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSS
T ss_pred ECCCCceEeccCCccccccccccEECCCCCEEEEEE--CCeEEEEECCCCceEEEecCCCCCceECcccceeEEEEeccC
Confidence 99987641 122234455689999999998766444 47999999998887665543 222
Q ss_pred eeEEEEecCCCEEEEEEcCC----------------------------------eEEEEECCCCeEEEEEcCC------C
Q 003236 685 ATQMRFQPRLGRILAAAIEN----------------------------------YISILDVETQVCRLKLQGH------K 724 (837)
Q Consensus 685 i~sl~~sp~g~~llags~dg----------------------------------~I~iwDl~s~~~~~~l~~h------~ 724 (837)
+.++.|+|+++.|++++.++ .|++||+.+++....+..+ .
T Consensus 175 ~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~ 254 (723)
T 1xfd_A 175 HIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMRE 254 (723)
T ss_dssp SEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSS
T ss_pred cceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEeeCCccCCCcc
Confidence 27899999999999887653 7999999988765566544 5
Q ss_pred CCEEEEEEcCCCCEEEEEe-C----CeEEEEEcCCCCCceeEEEeec-CCCce----EEEEEeCCCCEEEEE--EcCC--
Q 003236 725 NQVHSVCWNTSGEYLASVS-D----ELVRVWSIGSGSKGECIHELSC-TGNKF----HSCVFHPTFPSLLVI--GCYE-- 790 (837)
Q Consensus 725 ~~V~sl~~spdg~~Lasgs-D----g~I~IwDl~s~~~~~~i~~~~~-~~~~I----~sv~fspdg~~L~sg--s~dg-- 790 (837)
..+.+++|+|||++|++.. . ..|++||+.++. +...+.. +...+ ..++|+|||+.|++. ..++
T Consensus 255 ~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~---~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~ 331 (723)
T 1xfd_A 255 YYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGV---CTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGR 331 (723)
T ss_dssp EEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCC---EEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSS
T ss_pred ceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCc---ceEEEEeccCCEEeccCCCceEcCCCCeEEEEEecccCCC
Confidence 6789999999999887764 2 479999998873 3333322 22333 378999999987764 3455
Q ss_pred ----eEEEEE-CCCCc---EEEeccCCCCeeE-EEEeCCCCEEEEEECC---CcEEEeC
Q 003236 791 ----TLELWN-MTENK---TLTLSAHDKLVSS-LAASTVNGMVASASHD---KCVKIWK 837 (837)
Q Consensus 791 ----~I~IwD-l~s~~---~~~l~~h~~~V~s-la~spdg~~LaSgs~D---G~I~IWd 837 (837)
.|++|| ..++. ...+..+...+.. ++|+|||+.|+..+.+ +.++||+
T Consensus 332 ~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~ 390 (723)
T 1xfd_A 332 GKFYHITVSSSQPNSSNDNIQSITSGDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYS 390 (723)
T ss_dssp SCEEEEEEECSSCCSSSCCCCBSCCSSSCEEEEEEEETTTTEEEEEESSSCTTCCEEEE
T ss_pred cceeEEEEEeccCCCCccceeEeecCCeEEEeeeEEcCCCCEEEEEEcCCCCcceEEEE
Confidence 577888 45555 4445444445554 6999999999876655 7888884
|
| >2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=2e-21 Score=233.83 Aligned_cols=274 Identities=12% Similarity=0.096 Sum_probs=207.5
Q ss_pred CCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCC-----C
Q 003236 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTEN-----P 629 (837)
Q Consensus 555 ~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~-----~ 629 (837)
...|.+++|||| +.++.+. ++.|++||+.+++..... .+...+.+++|+|||++|+++ .|+.|++||+.+ +
T Consensus 81 ~~~v~~~~~spd-~~~~~~~-~~~i~~~d~~~~~~~~l~-~~~~~~~~~~~SpdG~~la~~-~~~~i~v~~~~~~~~~~g 156 (706)
T 2z3z_A 81 AFPSFRTLDAGR-GLVVLFT-QGGLVGFDMLARKVTYLF-DTNEETASLDFSPVGDRVAYV-RNHNLYIARGGKLGEGMS 156 (706)
T ss_dssp -CCCEEEEETTT-TEEEEEE-TTEEEEEETTTTEEEEEE-CCTTCCTTCEECTTSSEEEEE-ETTEEEEEECBCTTSCCC
T ss_pred ccCceeEEECCC-CeEEEEE-CCEEEEEECCCCceEEcc-CCcccccCCcCCCCCCEEEEE-ECCeEEEEecCcccccCC
Confidence 467999999999 6666654 599999999988765544 467789999999999999995 689999999987 6
Q ss_pred CceeEEeeccccc--------------eEEEEEcCCCCeEEEEEe--------------------------------CCC
Q 003236 630 DYSLRTFTGHSTT--------------VMSLDFHPSKEDLLCSCD--------------------------------NNS 663 (837)
Q Consensus 630 ~~~~~~~~~h~~~--------------V~sl~fspdg~~llasgs--------------------------------~Dg 663 (837)
+. ......+... +.+++|+|||+.+++++. .+.
T Consensus 157 ~~-~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~ 235 (706)
T 2z3z_A 157 RA-IAVTIDGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHV 235 (706)
T ss_dssp CC-EESCSCCBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEE
T ss_pred Cc-EEeccCCCCCeEcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCee
Confidence 53 3323333332 589999999987765541 346
Q ss_pred cEEEEECCCCeeeeEEe---cCCCeeEEEEecCCCEEEEEEcCC-----eEEEEECCCC-eEEEEEcC-CCC---CEEEE
Q 003236 664 EIRYWSINNGSCAGVFK---CQSGATQMRFQPRLGRILAAAIEN-----YISILDVETQ-VCRLKLQG-HKN---QVHSV 730 (837)
Q Consensus 664 ~I~vwDl~t~~~i~~~~---~~~~i~sl~~sp~g~~llags~dg-----~I~iwDl~s~-~~~~~l~~-h~~---~V~sl 730 (837)
.|++||+.+++...... ....+.+++|+|+++.|++++.++ .|.+||+.++ ........ +.. .+.++
T Consensus 236 ~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~ 315 (706)
T 2z3z_A 236 TVGIYHLATGKTVYLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPL 315 (706)
T ss_dssp EEEEEETTTTEEEECCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCC
T ss_pred EEEEEECCCCceEeeccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCc
Confidence 79999999988665442 234588999999999999988775 8999999998 44333322 222 24678
Q ss_pred EEcC--CCCEEEEEe-CCeEEEEEcC-CCCCceeEEEeecCCCceEE-EEEeCCCCEEEEEEcCC-----eEEEEECCCC
Q 003236 731 CWNT--SGEYLASVS-DELVRVWSIG-SGSKGECIHELSCTGNKFHS-CVFHPTFPSLLVIGCYE-----TLELWNMTEN 800 (837)
Q Consensus 731 ~~sp--dg~~Lasgs-Dg~I~IwDl~-s~~~~~~i~~~~~~~~~I~s-v~fspdg~~L~sgs~dg-----~I~IwDl~s~ 800 (837)
+|+| ||++|+++. |+.++||++. ++ ..+..+..+...+.. ++|+|+++.|++++.++ .|+.||+.++
T Consensus 316 ~~sp~~dg~~l~~~~~~g~~~l~~~~~~~---~~~~~l~~~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~~ 392 (706)
T 2z3z_A 316 TFLPGSNNQFIWQSRRDGWNHLYLYDTTG---RLIRQVTKGEWEVTNFAGFDPKGTRLYFESTEASPLERHFYCIDIKGG 392 (706)
T ss_dssp EECTTCSSEEEEEECTTSSCEEEEEETTS---CEEEECCCSSSCEEEEEEECTTSSEEEEEESSSCTTCBEEEEEETTCC
T ss_pred eeecCCCCEEEEEEccCCccEEEEEECCC---CEEEecCCCCeEEEeeeEEcCCCCEEEEEecCCCCceEEEEEEEcCCC
Confidence 9999 999998887 8889999886 33 456666666777776 79999999888777653 6778888887
Q ss_pred cEEEeccCCCCeeEEEEeCCCCEEEEEECC----CcEEEeC
Q 003236 801 KTLTLSAHDKLVSSLAASTVNGMVASASHD----KCVKIWK 837 (837)
Q Consensus 801 ~~~~l~~h~~~V~sla~spdg~~LaSgs~D----G~I~IWd 837 (837)
+...+ .|...+.+++|+|||++|+.++.+ +.|++||
T Consensus 393 ~~~~l-~~~~~~~~~~~spdg~~l~~~~~~~~~p~~i~l~d 432 (706)
T 2z3z_A 393 KTKDL-TPESGMHRTQLSPDGSAIIDIFQSPTVPRKVTVTN 432 (706)
T ss_dssp CCEES-CCSSSEEEEEECTTSSEEEEEEECSSCSCEEEEEE
T ss_pred Cceec-cCCCceEEEEECCCCCEEEEEecCCCCCcEEEEEE
Confidence 64444 477789999999999988876544 4599985
|
| >1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=1.3e-21 Score=246.57 Aligned_cols=278 Identities=8% Similarity=-0.002 Sum_probs=226.7
Q ss_pred EEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCC-CeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEc
Q 003236 548 FQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES-FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDT 626 (837)
Q Consensus 548 ~~~l~~H~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t-~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl 626 (837)
...+.+|...|.++.|+++ .++++++.|+.+.||.+.. +.....+..|. .+.+++|+|||++|+++ .++.|++||+
T Consensus 196 ~~~l~~~~~~v~~~~~s~d-~l~~~~~~dg~~~l~~~~~~g~~~~~l~~~~-~~~~~~~SpDG~~la~~-~~~~i~~~d~ 272 (1045)
T 1k32_A 196 FKKIVDMSTHVSSPVIVGH-RIYFITDIDGFGQIYSTDLDGKDLRKHTSFT-DYYPRHLNTDGRRILFS-KGGSIYIFNP 272 (1045)
T ss_dssp EEEEECCSSCCEEEEEETT-EEEEEECTTSSCEEEEEETTSCSCEECCCCC-SSCEEEEEESSSCEEEE-ETTEEEEECT
T ss_pred eEECcCCCCcccceEEeCC-EEEEEEeccCceEEEEEeCCCCcceEecCCC-CcceeeEcCCCCEEEEE-eCCEEEEecC
Confidence 4455899999999999998 6777888889999997653 34445565565 46778999999999888 4899999999
Q ss_pred CCCCceeEEeec-----------cccceEEEEEc-CCCCeEEEEEeCCCcEEEEECCCCeeeeEEecCC-CeeEEEEecC
Q 003236 627 ENPDYSLRTFTG-----------HSTTVMSLDFH-PSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQS-GATQMRFQPR 693 (837)
Q Consensus 627 ~~~~~~~~~~~~-----------h~~~V~sl~fs-pdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~~~-~i~sl~~sp~ 693 (837)
.... +..+.. |...+.+++|+ |+|..+++++ ++.|++|++..+.......+.. .+..++|+ +
T Consensus 273 ~~~~--l~~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s-d 347 (1045)
T 1k32_A 273 DTEK--IEKIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVS--RGQAFIQDVSGTYVLKVPEPLRIRYVRRGGD-T 347 (1045)
T ss_dssp TTCC--EEECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEE--TTEEEEECTTSSBEEECSCCSCEEEEEECSS-S
T ss_pred CceE--eeeeccCcccccccccccccccceeeecCCCCCEEEEEE--cCEEEEEcCCCCceEEccCCCcceEEeeeEc-C
Confidence 5432 334443 34579999999 9988666544 7899999999887655444445 68899999 9
Q ss_pred CCEEEEEEcCCeEE-EEECCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCce
Q 003236 694 LGRILAAAIENYIS-ILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKF 771 (837)
Q Consensus 694 g~~llags~dg~I~-iwDl~s~~~~~~l~~h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I 771 (837)
++.+++++.++.|. +||+..+.... +.+|...+.+++|+|||++|++++ ++.|++||+.++ ........+...+
T Consensus 348 g~~l~~~s~~~~l~~~~d~~~~~~~~-l~~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg---~~~~~~~~~~~~v 423 (1045)
T 1k32_A 348 KVAFIHGTREGDFLGIYDYRTGKAEK-FEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETG---KPTVIERSREAMI 423 (1045)
T ss_dssp EEEEEEEETTEEEEEEEETTTCCEEE-CCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTC---CEEEEEECSSSCC
T ss_pred CCeEEEEECCCceEEEEECCCCCceE-ecCCccceeeeEECCCCCEEEEECCCCeEEEEECCCC---ceEEeccCCCCCc
Confidence 99999998888898 99998876554 347888999999999999999988 889999999887 4555555788889
Q ss_pred EEEEEeCCCCEEEEEEcCC----------eEEEEECCCCcEEEeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 003236 772 HSCVFHPTFPSLLVIGCYE----------TLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 837 (837)
Q Consensus 772 ~sv~fspdg~~L~sgs~dg----------~I~IwDl~s~~~~~l~~h~~~V~sla~spdg~~LaSgs~DG~I~IWd 837 (837)
..++|+|||++|++++.++ .|++||+.+++...+..|...+.+++|+|||++|++++.++...+|+
T Consensus 424 ~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~~~~l~~~~~~~~~~~~spdG~~l~~~s~~~~~~~~~ 499 (1045)
T 1k32_A 424 TDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPD 499 (1045)
T ss_dssp CCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEEEECSCSSSBEEEEEECTTSCEEEEEESCCCCCEEC
T ss_pred cceEECCCCCeEEEEecCccccccCCCCCeEEEEECCCCcEEEeeCCCcccCCceEcCCCCEEEEEecccCCcCcc
Confidence 9999999999999887754 89999999998778888999999999999999999999988777774
|
| >1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24 | Back alignment and structure |
|---|
Probab=99.88 E-value=1.9e-21 Score=234.42 Aligned_cols=299 Identities=12% Similarity=0.080 Sum_probs=207.6
Q ss_pred CeEEcccCCCceEEeecCCCCCCCCccccccccCCCeeeeEEEEecCCCC---CeEEEEEcCCCCEEEEEECC-------
Q 003236 507 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTS---KVESCHFSPDGKLLATGGHD------- 576 (837)
Q Consensus 507 ~~v~~Gs~D~~v~~w~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~H~~---~V~sl~fSpdg~~Lasgs~D------- 576 (837)
.++++ +.|+++.+|..... .....+..|.. .|.+++|||||++||+++.+
T Consensus 29 ~~~~~-~~dg~i~~~d~~~g-------------------~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~ 88 (723)
T 1xfd_A 29 EFIYR-EQKGTVRLWNVETN-------------------TSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHS 88 (723)
T ss_dssp CBCCC-CSSSCEEEBCGGGC-------------------CCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSC
T ss_pred cEEEE-eCCCCEEEEECCCC-------------------cEEEEeccccccccccceEEECCCCCEEEEEecCccceeec
Confidence 45554 56778888854322 11234455554 49999999999999999874
Q ss_pred --CcEEEEeCCCCeEEEEe---ccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeEEeeccccc---------
Q 003236 577 --KKAVLWCTESFTVKSTL---EEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTT--------- 642 (837)
Q Consensus 577 --g~I~VWd~~t~~~~~~l---~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~~~~~~~~~~~h~~~--------- 642 (837)
+.|++||+.+++. ..+ ..|...+.+++|+|||++|++++. +.|++||+.+++. ......+...
T Consensus 89 ~~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~g~~-~~~~~~~~~~~~~~g~~~~ 165 (723)
T 1xfd_A 89 YTGYYVLSKIPHGDP-QSLDPPEVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVGKQA-IRVVSTGKEGVIYNGLSDW 165 (723)
T ss_dssp CCSEEEEEESSSCCC-EECCCTTCCSCCCSBCCBCSSTTCEEEEET-TEEEEESSSSSCC-EEEECCCBTTTEEEEECCH
T ss_pred ceeeEEEEECCCCce-EeccCCccccccccccEECCCCCEEEEEEC-CeEEEEECCCCce-EEEecCCCCCceECcccce
Confidence 7788999998876 333 345556899999999999999986 7999999998664 3333333332
Q ss_pred ---------eEEEEEcCCCCeEEEEEeCC---------------------------------CcEEEEECCCCeeeeEEe
Q 003236 643 ---------VMSLDFHPSKEDLLCSCDNN---------------------------------SEIRYWSINNGSCAGVFK 680 (837)
Q Consensus 643 ---------V~sl~fspdg~~llasgs~D---------------------------------g~I~vwDl~t~~~i~~~~ 680 (837)
+.+++|+|||+.++++...+ ..|++||+.++++...+.
T Consensus 166 v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~ 245 (723)
T 1xfd_A 166 LYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMM 245 (723)
T ss_dssp HHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECC
T ss_pred eEEEEeccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEee
Confidence 37899999998776554322 279999999887655554
Q ss_pred c-------CCCeeEEEEecCCCEEEEEEcC----CeEEEEECCCCeEEEEEcC-CCCCE----EEEEEcCCCCEEEEE-e
Q 003236 681 C-------QSGATQMRFQPRLGRILAAAIE----NYISILDVETQVCRLKLQG-HKNQV----HSVCWNTSGEYLASV-S 743 (837)
Q Consensus 681 ~-------~~~i~sl~~sp~g~~llags~d----g~I~iwDl~s~~~~~~l~~-h~~~V----~sl~~spdg~~Lasg-s 743 (837)
. ...+..+.|+|+++.+++.... ..|++||+.++++...+.. +...+ .+++|+|||+.|+.. +
T Consensus 246 ~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~ 325 (723)
T 1xfd_A 246 PPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRA 325 (723)
T ss_dssp CCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEE
T ss_pred CCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEEeccCCEEeccCCCceEcCCCCeEEEEEe
Confidence 3 2457889999999988766543 5799999999887666543 33444 378999999977754 3
Q ss_pred --CC------eEEEEEcCCCCCceeEEEeecCCCceEE-EEEeCCCCEEEEEEcC---CeEEEEECCCC---cEEEecc-
Q 003236 744 --DE------LVRVWSIGSGSKGECIHELSCTGNKFHS-CVFHPTFPSLLVIGCY---ETLELWNMTEN---KTLTLSA- 807 (837)
Q Consensus 744 --Dg------~I~IwDl~s~~~~~~i~~~~~~~~~I~s-v~fspdg~~L~sgs~d---g~I~IwDl~s~---~~~~l~~- 807 (837)
++ .|++||+..+....+...+......+.. ++|+|+++.|++.+.+ +.++||++... +...+..
T Consensus 326 ~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~ 405 (723)
T 1xfd_A 326 IPQGGRGKFYHITVSSSQPNSSNDNIQSITSGDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSANTVGNFNRQCLSCD 405 (723)
T ss_dssp ECCSSSSCEEEEEEECSSCCSSSCCCCBSCCSSSCEEEEEEEETTTTEEEEEESSSCTTCCEEEEECSSTTCCCBCSSTT
T ss_pred cccCCCcceeEEEEEeccCCCCccceeEeecCCeEEEeeeEEcCCCCEEEEEEcCCCCcceEEEEEeCCCCCCcceeccc
Confidence 66 4666663232210012333333344544 6999999999877766 68889987643 2223333
Q ss_pred --CCCCeeEEEEeCCCCEEEEEE
Q 003236 808 --HDKLVSSLAASTVNGMVASAS 828 (837)
Q Consensus 808 --h~~~V~sla~spdg~~LaSgs 828 (837)
|...+..++|+|||++|+...
T Consensus 406 ~~~~~~~~~~~~spdg~~l~~~~ 428 (723)
T 1xfd_A 406 LVENCTYFSASFSHSMDFFLLKC 428 (723)
T ss_dssp SSSSCCCCEEEECTTSSEEEEEC
T ss_pred ccCCCCeEEEEECCCCCEEEEEc
Confidence 677799999999999887654
|
| >1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=4.6e-21 Score=241.66 Aligned_cols=280 Identities=11% Similarity=0.062 Sum_probs=222.7
Q ss_pred EEEecCCCCCeEEEEEcCCCCEEEEEECC------CcEEEEeCCCCeEEEEeccCCCCe-------EEEEEcCCCCEEEE
Q 003236 548 FQLIPASTSKVESCHFSPDGKLLATGGHD------KKAVLWCTESFTVKSTLEEHTQWI-------TDVRFSPSLSRLAT 614 (837)
Q Consensus 548 ~~~l~~H~~~V~sl~fSpdg~~Lasgs~D------g~I~VWd~~t~~~~~~l~~h~~~I-------~~l~fspdg~~Lat 614 (837)
...+.+|...|.+++|||||++||+++.+ ..|++|++.+++ ...+..|...+ .+++|+|||+++++
T Consensus 45 ~~~lt~~~~~v~~~~~SPDG~~la~~s~~~~~~~~~~i~~~d~~~g~-~~~lt~~~~~~~~~~~~~~~~~~SpDg~ll~~ 123 (1045)
T 1k32_A 45 TRKIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGE-IKRITYFSGKSTGRRMFTDVAGFDPDGNLIIS 123 (1045)
T ss_dssp EEEEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTE-EEECCCCCEEEETTEECSEEEEECTTCCEEEE
T ss_pred EEEeeeCCCcccCeEECCCCCEEEEEEeeccCCCCCeEEEEECCCCC-eEEcccCCCcccccccccccccCCCCCEEEEE
Confidence 35567899999999999999999988643 379999998876 56778888888 99999999997777
Q ss_pred EeCC------CeEEEEEcCCCCce------------------------------------------------eEEeeccc
Q 003236 615 SSAD------RTVRVWDTENPDYS------------------------------------------------LRTFTGHS 640 (837)
Q Consensus 615 gs~D------g~I~IWDl~~~~~~------------------------------------------------~~~~~~h~ 640 (837)
++.+ ..|++||+.++... ...+.+|.
T Consensus 124 ~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~spG~l~~~~~~~~~~~~~~~~g~~~~~lw~~~~~~~~~~l~~~~ 203 (1045)
T 1k32_A 124 TDAMQPFSSMTCLYRVENDGINFVPLNLGPATHILFADGRRVIGRNTFELPHWKGYRGGTRGKIWIEVNSGAFKKIVDMS 203 (1045)
T ss_dssp ECTTSSSTTCCEEEEEEGGGTEEEECCSCSCSEEEEETTEEEEEESCSCCTTSTTCCSTTCCEEEEEEETTEEEEEECCS
T ss_pred ECCcCCCcccceEEEEECCCCCeEEecCCCcceeeeCCCEEEEeccCCCccccccccCCCcCCEEEECCCCCeEECcCCC
Confidence 7754 35788887543211 11234567
Q ss_pred cceEEEEEcCCCCeEEEEEeCCCcEEEEECCC-CeeeeEEecCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEE
Q 003236 641 TTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN-GSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLK 719 (837)
Q Consensus 641 ~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t-~~~i~~~~~~~~i~sl~~sp~g~~llags~dg~I~iwDl~s~~~~~~ 719 (837)
..+.++.|+++ .++++++.++.+.+|.+.. +.....+.....+...+|+|++..++++ .++.|++||+...... .
T Consensus 204 ~~v~~~~~s~d--~l~~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~~~~~SpDG~~la~~-~~~~i~~~d~~~~~l~-~ 279 (1045)
T 1k32_A 204 THVSSPVIVGH--RIYFITDIDGFGQIYSTDLDGKDLRKHTSFTDYYPRHLNTDGRRILFS-KGGSIYIFNPDTEKIE-K 279 (1045)
T ss_dssp SCCEEEEEETT--EEEEEECTTSSCEEEEEETTSCSCEECCCCCSSCEEEEEESSSCEEEE-ETTEEEEECTTTCCEE-E
T ss_pred CcccceEEeCC--EEEEEEeccCceEEEEEeCCCCcceEecCCCCcceeeEcCCCCEEEEE-eCCEEEEecCCceEee-e
Confidence 78888899876 5777888889889997653 3344455445567788999999988887 5899999999554433 5
Q ss_pred EcC-----------CCCCEEEEEEc-CCCCEEEEEeCCeEEEEEcCCCCCceeEEEeecCCC-ceEEEEEeCCCCEEEEE
Q 003236 720 LQG-----------HKNQVHSVCWN-TSGEYLASVSDELVRVWSIGSGSKGECIHELSCTGN-KFHSCVFHPTFPSLLVI 786 (837)
Q Consensus 720 l~~-----------h~~~V~sl~~s-pdg~~LasgsDg~I~IwDl~s~~~~~~i~~~~~~~~-~I~sv~fspdg~~L~sg 786 (837)
+.. |...+.+++|+ |||++|++++++.|++|++..+ . ...+..+.. .+..++|+ +++.|+++
T Consensus 280 l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~~~~i~~~~~~~~---~-~~~~~~~~~~~~~~~~~s-dg~~l~~~ 354 (1045)
T 1k32_A 280 IEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVSRGQAFIQDVSGT---Y-VLKVPEPLRIRYVRRGGD-TKVAFIHG 354 (1045)
T ss_dssp CCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEETTEEEEECTTSS---B-EEECSCCSCEEEEEECSS-SEEEEEEE
T ss_pred eccCcccccccccccccccceeeecCCCCCEEEEEEcCEEEEEcCCCC---c-eEEccCCCcceEEeeeEc-CCCeEEEE
Confidence 544 23468999999 9999999988999999999875 2 233555666 88999999 99999999
Q ss_pred EcCCeEE-EEECCCCcEEEeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 003236 787 GCYETLE-LWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 837 (837)
Q Consensus 787 s~dg~I~-IwDl~s~~~~~l~~h~~~V~sla~spdg~~LaSgs~DG~I~IWd 837 (837)
+.+..|. +||+.+++...+..|...+.+++|+|||++|++++.|+.|++||
T Consensus 355 s~~~~l~~~~d~~~~~~~~l~~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d 406 (1045)
T 1k32_A 355 TREGDFLGIYDYRTGKAEKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVD 406 (1045)
T ss_dssp ETTEEEEEEEETTTCCEEECCCCCCSEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred ECCCceEEEEECCCCCceEecCCccceeeeEECCCCCEEEEECCCCeEEEEE
Confidence 9888999 99999988777778888999999999999999999999999996
|
| >3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum} | Back alignment and structure |
|---|
Probab=99.88 E-value=3.4e-20 Score=202.84 Aligned_cols=260 Identities=11% Similarity=0.100 Sum_probs=183.2
Q ss_pred CCcEEEEeC--CCCeEEE-EeccCCCCeEEEEEcCCCCEEEEEeC---CCeEEEEEcCCCCc-eeEEeeccccceEEEEE
Q 003236 576 DKKAVLWCT--ESFTVKS-TLEEHTQWITDVRFSPSLSRLATSSA---DRTVRVWDTENPDY-SLRTFTGHSTTVMSLDF 648 (837)
Q Consensus 576 Dg~I~VWd~--~t~~~~~-~l~~h~~~I~~l~fspdg~~Latgs~---Dg~I~IWDl~~~~~-~~~~~~~h~~~V~sl~f 648 (837)
++.|.+|++ ++++... ....+...+..++|+|+++ |++++. ++.|++||+.++.. .+..+..+...+..++|
T Consensus 15 ~~~i~v~~~d~~tg~~~~~~~~~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~ 93 (347)
T 3hfq_A 15 SQGIYQGTLDTTAKTLTNDGLLAATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAV 93 (347)
T ss_dssp CCEEEEEEEETTTTEEEEEEEEEECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEEEE
T ss_pred CCCEEEEEEcCCCCeEEEeeeeeccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEEEE
Confidence 456777655 4565543 3334567788999999999 665554 68999999976543 23344557778999999
Q ss_pred cCCCCeEEEEEeCCCcEEEEECCC-Ce--eeeEEecC----------CCeeEEEEecCCCEEEEEEcCCeEEEEECC-CC
Q 003236 649 HPSKEDLLCSCDNNSEIRYWSINN-GS--CAGVFKCQ----------SGATQMRFQPRLGRILAAAIENYISILDVE-TQ 714 (837)
Q Consensus 649 spdg~~llasgs~Dg~I~vwDl~t-~~--~i~~~~~~----------~~i~sl~~sp~g~~llags~dg~I~iwDl~-s~ 714 (837)
+|+++.+++++..++.|.+|++.. +. .+..+... ..+.+++|+|+++.+++...++.|.+||+. ++
T Consensus 94 spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g 173 (347)
T 3hfq_A 94 DEARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAG 173 (347)
T ss_dssp ETTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTTS
T ss_pred CCCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCCC
Confidence 999987776666789999999963 33 23333221 137789999999944444457899999998 45
Q ss_pred eEE--EEEcC-CCCCEEEEEEcCCCCEEEEEe--CCeEEEEEcCCC-CCceeEEEeecCC------CceEEEEEeCCCCE
Q 003236 715 VCR--LKLQG-HKNQVHSVCWNTSGEYLASVS--DELVRVWSIGSG-SKGECIHELSCTG------NKFHSCVFHPTFPS 782 (837)
Q Consensus 715 ~~~--~~l~~-h~~~V~sl~~spdg~~Lasgs--Dg~I~IwDl~s~-~~~~~i~~~~~~~------~~I~sv~fspdg~~ 782 (837)
+.. ..+.. ....+..++|+|||++|+++. ++.|.+|++... .....+..+.... ..+..++|+|+|++
T Consensus 174 ~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~ 253 (347)
T 3hfq_A 174 QLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHF 253 (347)
T ss_dssp CEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCE
T ss_pred cEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCE
Confidence 432 22232 234688999999999777765 789999998752 1112233333222 45888999999998
Q ss_pred EEEEE-cCCeEEEEECCCC---cEE-EeccCCCCeeEEEEeCCCCEEEEEECC-CcEEEe
Q 003236 783 LLVIG-CYETLELWNMTEN---KTL-TLSAHDKLVSSLAASTVNGMVASASHD-KCVKIW 836 (837)
Q Consensus 783 L~sgs-~dg~I~IwDl~s~---~~~-~l~~h~~~V~sla~spdg~~LaSgs~D-G~I~IW 836 (837)
|++++ .++.|.+|++... +.+ .+..+...+.+++|+|||++|++++.+ +.|.+|
T Consensus 254 l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~ 313 (347)
T 3hfq_A 254 LYVSNRGYNTLAVFAVTADGHLTLIQQISTEGDFPRDFDLDPTEAFVVVVNQNTDNATLY 313 (347)
T ss_dssp EEEEEETTTEEEEEEECGGGCEEEEEEEECSSSCCCEEEECTTSSEEEEEETTTTEEEEE
T ss_pred EEEEeCCCCEEEEEEECCCCcEEEeEEEecCCCCcCeEEECCCCCEEEEEEcCCCcEEEE
Confidence 86655 5789999999732 223 445566778999999999988888765 899999
|
| >1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B* | Back alignment and structure |
|---|
Probab=99.88 E-value=8.1e-21 Score=205.05 Aligned_cols=268 Identities=12% Similarity=0.087 Sum_probs=202.9
Q ss_pred CeEEcccCCCceEEeecCCCCCCCCccccccccCCCeeeeEEEEec-CCCC-CeEEEEEcCCCCEEE-EEECCCcEEEEe
Q 003236 507 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIP-ASTS-KVESCHFSPDGKLLA-TGGHDKKAVLWC 583 (837)
Q Consensus 507 ~~v~~Gs~D~~v~~w~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~-~H~~-~V~sl~fSpdg~~La-sgs~Dg~I~VWd 583 (837)
.++++++.++.|.+|..... ..+..+. ++.. .+.+++|+|||++++ ++..++.|.+||
T Consensus 2 ~~~v~~~~~~~v~~~d~~~~-------------------~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d 62 (337)
T 1pby_B 2 DYILAPARPDKLVVIDTEKM-------------------AVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKID 62 (337)
T ss_dssp EEEEEEETTTEEEEEETTTT-------------------EEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEE
T ss_pred cEEEEcCCCCeEEEEECCCC-------------------cEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEE
Confidence 46788888999999965322 1122232 2222 478899999998765 555678999999
Q ss_pred CCCCeEEEEecc-C----CCCeEEEEEcCCCCEEEEEe------------CCCeEEEEEcCCCCceeEEeeccccceEEE
Q 003236 584 TESFTVKSTLEE-H----TQWITDVRFSPSLSRLATSS------------ADRTVRVWDTENPDYSLRTFTGHSTTVMSL 646 (837)
Q Consensus 584 ~~t~~~~~~l~~-h----~~~I~~l~fspdg~~Latgs------------~Dg~I~IWDl~~~~~~~~~~~~h~~~V~sl 646 (837)
+.+++.+..+.. + ...+.+++|+|++++|++++ .++.|.+||+.+++. +..+.. ...+.++
T Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~-~~~~~~-~~~~~~~ 140 (337)
T 1pby_B 63 LVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSR-RKAFEA-PRQITML 140 (337)
T ss_dssp TTTCCEEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEE-EEEEEC-CSSCCCE
T ss_pred CCCCCeEeeEEcCCcccccccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcE-EEEEeC-CCCccee
Confidence 999988876653 2 22678999999999999886 579999999987653 444443 4568889
Q ss_pred EEcCCCCeEEEEEeCCCcEEEEECCCCeeeeEEecCCCeeEEEEecCCCEEEEEEcCC----------------------
Q 003236 647 DFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIEN---------------------- 704 (837)
Q Consensus 647 ~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~~~~i~sl~~sp~g~~llags~dg---------------------- 704 (837)
+|+|++..++++ ++.|++||+.+++.+..+........+.|+|++..+++.+..+
T Consensus 141 ~~s~dg~~l~~~---~~~i~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (337)
T 1pby_B 141 AWARDGSKLYGL---GRDLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAY 217 (337)
T ss_dssp EECTTSSCEEEE---SSSEEEEETTTTEEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGE
T ss_pred EECCCCCEEEEe---CCeEEEEECCCCcEeeeeeccccCCCceeCCCccEEeeeccCCCceeeeeecccccccccccccc
Confidence 999998876655 6889999999999887776544223447888888765554332
Q ss_pred --eEEEEECCCCeEE-EEEcCCCCCEEEEEEcCCCCEEEEEeCCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCC
Q 003236 705 --YISILDVETQVCR-LKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFP 781 (837)
Q Consensus 705 --~I~iwDl~s~~~~-~~l~~h~~~V~sl~~spdg~~LasgsDg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fspdg~ 781 (837)
.|.+||+.+++.. ..+..+...+.+++|+|++++|+++ ++.|++||+.++ +.+..+.. ...+.+++|+|+++
T Consensus 218 ~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~-~~~v~~~d~~~~---~~~~~~~~-~~~~~~~~~s~dg~ 292 (337)
T 1pby_B 218 RTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGA-YNVLESFDLEKN---ASIKRVPL-PHSYYSVNVSTDGS 292 (337)
T ss_dssp EEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTSSEEEEE-ESEEEEEETTTT---EEEEEEEC-SSCCCEEEECTTSC
T ss_pred ccceEEEeCCCCCceEeecCCCCCceeeEEECCCCCEEEEe-CCeEEEEECCCC---cCcceecC-CCceeeEEECCCCC
Confidence 4789999988664 3344566788999999999999888 799999999887 55555543 35678999999999
Q ss_pred EEEEEEcCCeEEEEECCCCcEE
Q 003236 782 SLLVIGCYETLELWNMTENKTL 803 (837)
Q Consensus 782 ~L~sgs~dg~I~IwDl~s~~~~ 803 (837)
+|++++.++.|++||+.+++.+
T Consensus 293 ~l~~~~~~~~i~v~d~~~~~~~ 314 (337)
T 1pby_B 293 TVWLGGALGDLAAYDAETLEKK 314 (337)
T ss_dssp EEEEESBSSEEEEEETTTCCEE
T ss_pred EEEEEcCCCcEEEEECcCCcEE
Confidence 9999988999999999999877
|
| >1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B* | Back alignment and structure |
|---|
Probab=99.88 E-value=1.2e-20 Score=205.14 Aligned_cols=270 Identities=9% Similarity=0.039 Sum_probs=195.0
Q ss_pred EEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEeccCC-CCeEEEEEcCCCCEEE-EEeCCCeEEEEEcCCCCceeEEee
Q 003236 560 SCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHT-QWITDVRFSPSLSRLA-TSSADRTVRVWDTENPDYSLRTFT 637 (837)
Q Consensus 560 sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~-~~I~~l~fspdg~~La-tgs~Dg~I~IWDl~~~~~~~~~~~ 637 (837)
.+++++++.++++++.++.|++||+.+++.+..+..+. ..+..++|+|++++++ ++..++.|.+||+.+++. +..+.
T Consensus 4 g~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~-~~~~~ 82 (349)
T 1jmx_B 4 GPALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKN-TFHAN 82 (349)
T ss_dssp CCCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEE-EEEEE
T ss_pred cccccCCCEEEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcE-EEEEE
Confidence 45678889999999999999999999999888876443 2578999999998665 445689999999988654 33333
Q ss_pred -cc-----ccceEEEEEcCCCCeEEEEEeC-----------CCcEEEEECCCCe---eeeEEecCCCeeEEEEecCCCEE
Q 003236 638 -GH-----STTVMSLDFHPSKEDLLCSCDN-----------NSEIRYWSINNGS---CAGVFKCQSGATQMRFQPRLGRI 697 (837)
Q Consensus 638 -~h-----~~~V~sl~fspdg~~llasgs~-----------Dg~I~vwDl~t~~---~i~~~~~~~~i~sl~~sp~g~~l 697 (837)
.+ ...+.+++|+|+++.++++... ++.|.+||+.+++ .+..+.....+.+++|+|+++ +
T Consensus 83 ~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~-l 161 (349)
T 1jmx_B 83 LSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGS-L 161 (349)
T ss_dssp SCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECTTSC-E
T ss_pred cccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeeccCCCcccceeECCCCc-E
Confidence 22 2347899999999877655533 4899999998844 344555566788999999999 6
Q ss_pred EEEEcCCeEEEEECCCCeEEEEEcCCCC------------------------CEEEEEEcCCCCEEEEEe--CCeEEEEE
Q 003236 698 LAAAIENYISILDVETQVCRLKLQGHKN------------------------QVHSVCWNTSGEYLASVS--DELVRVWS 751 (837)
Q Consensus 698 lags~dg~I~iwDl~s~~~~~~l~~h~~------------------------~V~sl~~spdg~~Lasgs--Dg~I~IwD 751 (837)
+++ ++.|.+||+.+++.+..+..+.. ...++++++++....... ...+..+|
T Consensus 162 ~~~--~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~ 239 (349)
T 1jmx_B 162 YVA--GPDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVD 239 (349)
T ss_dssp EEE--SSSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEE
T ss_pred EEc--cCcEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccccccceeEEEEe
Confidence 664 34599999999988877754320 344566766543221111 11222345
Q ss_pred cCCCCCceeEEEeecCCCceEEEEEeC-CCCEEEEEEcCCeEEEEECCCCcEEEeccCCCCeeEEEEeCCCCEEEEEECC
Q 003236 752 IGSGSKGECIHELSCTGNKFHSCVFHP-TFPSLLVIGCYETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHD 830 (837)
Q Consensus 752 l~s~~~~~~i~~~~~~~~~I~sv~fsp-dg~~L~sgs~dg~I~IwDl~s~~~~~l~~h~~~V~sla~spdg~~LaSgs~D 830 (837)
..++. ..+..+......+..++|+| ++++++++ ++.|++||+.+++.+........+.+++|+|++++|++++.+
T Consensus 240 ~~~~~--~~~~~~~~~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~ 315 (349)
T 1jmx_B 240 LKTGK--THTQEFADLTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQRKLIKAANLDHTYYCVAFDKKGDKLYLGGTF 315 (349)
T ss_dssp TTTCC--EEEEEEEECSSCEEEEEECSSCTTEEEEE--ESEEEEEETTTTEEEEEEECSSCCCEEEECSSSSCEEEESBS
T ss_pred ccCCc--EEecccccCCCcceeeEecCCCCCEEEEE--cCeEEEEECccCeEEEEEcCCCCccceEECCCCCEEEEecCC
Confidence 54442 12222333566788999999 99998888 889999999999887554455668899999999988888889
Q ss_pred CcEEEeC
Q 003236 831 KCVKIWK 837 (837)
Q Consensus 831 G~I~IWd 837 (837)
+.|++||
T Consensus 316 ~~v~v~d 322 (349)
T 1jmx_B 316 NDLAVFN 322 (349)
T ss_dssp SEEEEEE
T ss_pred CeEEEEe
Confidence 9999996
|
| >3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp} | Back alignment and structure |
|---|
Probab=99.88 E-value=9e-21 Score=210.16 Aligned_cols=287 Identities=11% Similarity=0.072 Sum_probs=208.9
Q ss_pred EEEEecCCCCCeEE-----EEEcCCCCEEEEEEC-CC--cEEEEeCCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCC
Q 003236 547 EFQLIPASTSKVES-----CHFSPDGKLLATGGH-DK--KAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSAD 618 (837)
Q Consensus 547 ~~~~l~~H~~~V~s-----l~fSpdg~~Lasgs~-Dg--~I~VWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~D 618 (837)
++..+..|...+.. .+|||||++|++++. ++ .|.+||+.+++.......+...+..++|+||++.|++++.+
T Consensus 22 ~~~~lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~spdg~~l~~~~~~ 101 (388)
T 3pe7_A 22 QVTRLTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLTEGRGDNTFGGFLSPDDDALFYVKDG 101 (388)
T ss_dssp EEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEECCCSSCBCSSSCEECTTSSEEEEEETT
T ss_pred ceEEecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEeeeCCCCCccceEEcCCCCEEEEEeCC
Confidence 34556667666665 889999999999887 66 48889999998887777777777678899999999999999
Q ss_pred CeEEEEEcCCCCceeEEeeccccceEEEE--EcCCCCeEEEEE---------------------eCCCcEEEEECCCCee
Q 003236 619 RTVRVWDTENPDYSLRTFTGHSTTVMSLD--FHPSKEDLLCSC---------------------DNNSEIRYWSINNGSC 675 (837)
Q Consensus 619 g~I~IWDl~~~~~~~~~~~~h~~~V~sl~--fspdg~~llasg---------------------s~Dg~I~vwDl~t~~~ 675 (837)
+.|++||+.+++. ...+..+...+.... +++++..+++.. ..+..|++||+.+++.
T Consensus 102 ~~l~~~d~~~g~~-~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~ 180 (388)
T 3pe7_A 102 RNLMRVDLATLEE-NVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGES 180 (388)
T ss_dssp TEEEEEETTTCCE-EEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCE
T ss_pred CeEEEEECCCCcc-eeeeechhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCce
Confidence 9999999998764 444454555554444 488887655321 2346899999999987
Q ss_pred eeEEecCCCeeEEEEec-CCCEEEEEEcC------CeEEEEECCCCeEEEEEcCCC--CCEEEEEEcCCCCEEEEEe--C
Q 003236 676 AGVFKCQSGATQMRFQP-RLGRILAAAIE------NYISILDVETQVCRLKLQGHK--NQVHSVCWNTSGEYLASVS--D 744 (837)
Q Consensus 676 i~~~~~~~~i~sl~~sp-~g~~llags~d------g~I~iwDl~s~~~~~~l~~h~--~~V~sl~~spdg~~Lasgs--D 744 (837)
.........+..+.|+| +++.|+.+..+ ..|.++|+..+... .+..+. ..+..++|+|||+.|+..+ +
T Consensus 181 ~~l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~-~l~~~~~~~~~~~~~~spdg~~l~~~~~~~ 259 (388)
T 3pe7_A 181 TVILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNMR-KVKTHAEGESCTHEFWVPDGSALVYVSYLK 259 (388)
T ss_dssp EEEEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCCE-ESCCCCTTEEEEEEEECTTSSCEEEEEEET
T ss_pred EEeecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCceE-EeeeCCCCcccccceECCCCCEEEEEecCC
Confidence 77777777799999999 99988887763 37888888765443 333343 3578899999999776554 3
Q ss_pred C----eEEEEEcCCCCCceeEEEeecCCCc---eEEEEEeCCCCEEEEE---------EcCCeEEEEECCCCcEEEeccC
Q 003236 745 E----LVRVWSIGSGSKGECIHELSCTGNK---FHSCVFHPTFPSLLVI---------GCYETLELWNMTENKTLTLSAH 808 (837)
Q Consensus 745 g----~I~IwDl~s~~~~~~i~~~~~~~~~---I~sv~fspdg~~L~sg---------s~dg~I~IwDl~s~~~~~l~~h 808 (837)
+ .|++||+.++.. ..+..+..+... ...++|+|||+.|++. ..+..|++||+.+++...+..|
T Consensus 260 ~~~~~~l~~~d~~~g~~-~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~ 338 (388)
T 3pe7_A 260 GSPDRFIYSADPETLEN-RQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKNGTQHRVARH 338 (388)
T ss_dssp TCCCEEEEEECTTTCCE-EEEEEECCEEEEEECTTSSEEEEEECCC------------CCCCEEEEEETTTTEEEEEEEC
T ss_pred CCCcceEEEEecCCCce-EEEEcCCCceeeeecCCCCeEccCCCcceeEeeeccccccCCCCEEEEEeccCCceEEeccc
Confidence 3 399999988743 233333221000 1113799999988865 3455899999999988777767
Q ss_pred CC-----------CeeEEEEeCCCCEEEEEE-CCCcEEEe
Q 003236 809 DK-----------LVSSLAASTVNGMVASAS-HDKCVKIW 836 (837)
Q Consensus 809 ~~-----------~V~sla~spdg~~LaSgs-~DG~I~IW 836 (837)
.. .+.+++|+|||+.|+.++ .+|...||
T Consensus 339 ~~~~~~~~~~~~~~~~~~~~spDg~~l~~~s~~~g~~~l~ 378 (388)
T 3pe7_A 339 DTSWKVFEGDRQVTHPHPSFTPDDKQILFTSDVHGKPALY 378 (388)
T ss_dssp CCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEE
T ss_pred cCcccccccccccCCCCccCCCCCCEEEEEecCCCceeEE
Confidence 66 688899999999887666 57777777
|
| >3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A | Back alignment and structure |
|---|
Probab=99.87 E-value=2.1e-19 Score=197.85 Aligned_cols=262 Identities=12% Similarity=0.087 Sum_probs=190.7
Q ss_pred CCCCeEEEEEcCCCCEEEEEECC----CcEEEEeCCC--CeE--EEEeccCCCCeEEEEEcCCCCEEEEEe-CCCeEEEE
Q 003236 554 STSKVESCHFSPDGKLLATGGHD----KKAVLWCTES--FTV--KSTLEEHTQWITDVRFSPSLSRLATSS-ADRTVRVW 624 (837)
Q Consensus 554 H~~~V~sl~fSpdg~~Lasgs~D----g~I~VWd~~t--~~~--~~~l~~h~~~I~~l~fspdg~~Latgs-~Dg~I~IW 624 (837)
|...+..++|+|||++|++++.+ +.|.+|++.. ++. +..+..+...+..+++ ++++|++++ .++.|.+|
T Consensus 48 ~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~--dg~~l~~~~~~~~~v~~~ 125 (361)
T 3scy_A 48 EVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKTMGADPCYLTT--NGKNIVTANYSGGSITVF 125 (361)
T ss_dssp ECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEECSSSCEEEEEE--CSSEEEEEETTTTEEEEE
T ss_pred cCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEeccCCCCcEEEEE--CCCEEEEEECCCCEEEEE
Confidence 66778889999999999999876 7999998765 443 3444445667788888 788877776 57899999
Q ss_pred EcCCCCcee--EE---eec--------cccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCee--------------ee
Q 003236 625 DTENPDYSL--RT---FTG--------HSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSC--------------AG 677 (837)
Q Consensus 625 Dl~~~~~~~--~~---~~~--------h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~--------------i~ 677 (837)
++....... .. ..+ +...+.+++|+|+++.+++++..++.|++|++..... ..
T Consensus 126 ~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~ 205 (361)
T 3scy_A 126 PIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAF 205 (361)
T ss_dssp EBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEE
T ss_pred EeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccce
Confidence 997543211 11 111 1234588999999998887777789999999875431 11
Q ss_pred EEecCCCeeEEEEecCCCEEEEEE-cCCeEEEEECCCCeE--EEEEc---CCCCCEEEEEEcCCCCEEEEEe-C--CeEE
Q 003236 678 VFKCQSGATQMRFQPRLGRILAAA-IENYISILDVETQVC--RLKLQ---GHKNQVHSVCWNTSGEYLASVS-D--ELVR 748 (837)
Q Consensus 678 ~~~~~~~i~sl~~sp~g~~llags-~dg~I~iwDl~s~~~--~~~l~---~h~~~V~sl~~spdg~~Lasgs-D--g~I~ 748 (837)
.......+..++|+|+++++++++ .++.|.+||+.++.. +..+. .+...+.+++|+|||++|+++. + +.|.
T Consensus 206 ~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~ 285 (361)
T 3scy_A 206 KVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVA 285 (361)
T ss_dssp ECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEE
T ss_pred ecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEE
Confidence 223355688999999999988888 589999999987754 33332 2345678999999999987766 5 6899
Q ss_pred EEEcCC-CCCceeEEEeecCCCceEEEEEeCCCCEEEEEE-cCCeEEEE--ECCCCcEEEec--cCCCCeeEEEEe
Q 003236 749 VWSIGS-GSKGECIHELSCTGNKFHSCVFHPTFPSLLVIG-CYETLELW--NMTENKTLTLS--AHDKLVSSLAAS 818 (837)
Q Consensus 749 IwDl~s-~~~~~~i~~~~~~~~~I~sv~fspdg~~L~sgs-~dg~I~Iw--Dl~s~~~~~l~--~h~~~V~sla~s 818 (837)
||++.. ......+..+.. ...+..++|+|++++|++++ .++.|.+| |..++++..+. .+...+.||+|.
T Consensus 286 v~~~~~~~g~~~~~~~~~~-g~~~~~~~~spdg~~l~~~~~~~~~v~v~~~d~~~g~~~~~~~~~~~~~p~~v~~~ 360 (361)
T 3scy_A 286 IFKVDETNGTLTKVGYQLT-GIHPRNFIITPNGKYLLVACRDTNVIQIFERDQATGLLTDIKKDIKVDKPVCLKFV 360 (361)
T ss_dssp EEEECTTTCCEEEEEEEEC-SSCCCEEEECTTSCEEEEEETTTTEEEEEEECTTTCCEEECSCCEECSSEEEEEEE
T ss_pred EEEEcCCCCcEEEeeEecC-CCCCceEEECCCCCEEEEEECCCCCEEEEEEECCCCcEeecceeeeCCCCeEEEEc
Confidence 999962 222234555554 56788999999999999988 46788885 55677766443 345678899886
|
| >3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum} | Back alignment and structure |
|---|
Probab=99.87 E-value=9.9e-20 Score=199.18 Aligned_cols=249 Identities=14% Similarity=0.161 Sum_probs=183.6
Q ss_pred CCCCCeEEEEEcCCCCEEEEEEC---CCcEEEEeCCCCe--EEEEeccCCCCeEEEEEcCCCCEEEEEe-CCCeEEEEEc
Q 003236 553 ASTSKVESCHFSPDGKLLATGGH---DKKAVLWCTESFT--VKSTLEEHTQWITDVRFSPSLSRLATSS-ADRTVRVWDT 626 (837)
Q Consensus 553 ~H~~~V~sl~fSpdg~~Lasgs~---Dg~I~VWd~~t~~--~~~~l~~h~~~I~~l~fspdg~~Latgs-~Dg~I~IWDl 626 (837)
.+...+..++|+|||+ |++++. ++.|++|++.+++ .+..+..+...+..++|+|++++|++++ .++.|.+|++
T Consensus 37 ~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~ 115 (347)
T 3hfq_A 37 AATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAVDEARQLVYSANYHKGTAEVMKI 115 (347)
T ss_dssp EECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEEEEETTTTEEEEEETTTTEEEEEEE
T ss_pred eccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEEEECCCCCEEEEEeCCCCEEEEEEe
Confidence 3446678899999999 555443 6899999997765 3445456778899999999999998888 6899999999
Q ss_pred CCCCc-e-eEEeec---------cccceEEEEEcCCCCeEEEEEeCCCcEEEEECC-CCeeeeE--Ee--cCCCeeEEEE
Q 003236 627 ENPDY-S-LRTFTG---------HSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSIN-NGSCAGV--FK--CQSGATQMRF 690 (837)
Q Consensus 627 ~~~~~-~-~~~~~~---------h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~-t~~~i~~--~~--~~~~i~sl~~ 690 (837)
..... . +..+.. +...+.+++|+|++. ++++...++.|++||+. +++.... +. ....+..++|
T Consensus 116 ~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~-l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~ 194 (347)
T 3hfq_A 116 AADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNR-LAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVF 194 (347)
T ss_dssp CTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSC-EEEEETTTTEEEEEEECTTSCEEEEEEEECCTTCCEEEEEE
T ss_pred CCCCCeeecceeecCCCCCCccccCCCceEEEECCCCc-EEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCCCCCceEEE
Confidence 64322 1 222211 123488999999998 78787778999999998 5544322 22 2346788999
Q ss_pred ecCCCEEEEEE-cCCeEEEEECCC--CeE--EEEEcCCC------CCEEEEEEcCCCCEEEEEe--CCeEEEEEcCCCCC
Q 003236 691 QPRLGRILAAA-IENYISILDVET--QVC--RLKLQGHK------NQVHSVCWNTSGEYLASVS--DELVRVWSIGSGSK 757 (837)
Q Consensus 691 sp~g~~llags-~dg~I~iwDl~s--~~~--~~~l~~h~------~~V~sl~~spdg~~Lasgs--Dg~I~IwDl~s~~~ 757 (837)
+|+++++++++ .++.|.+|++.. ++. +..+.... ..+..++|+|||++|+++. ++.|.+|++.....
T Consensus 195 spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g~ 274 (347)
T 3hfq_A 195 SPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADGH 274 (347)
T ss_dssp CTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECGGGC
T ss_pred CCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECCCCc
Confidence 99999777765 468999999874 443 33333332 4588999999999885544 78999999974323
Q ss_pred ceeEEEeecCCCceEEEEEeCCCCEEEEEEcC-CeEEEE--ECCCCcEE
Q 003236 758 GECIHELSCTGNKFHSCVFHPTFPSLLVIGCY-ETLELW--NMTENKTL 803 (837)
Q Consensus 758 ~~~i~~~~~~~~~I~sv~fspdg~~L~sgs~d-g~I~Iw--Dl~s~~~~ 803 (837)
...+..+..+...+..++|+|++++|++++.+ +.|.+| |..++++.
T Consensus 275 ~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~d~~tg~l~ 323 (347)
T 3hfq_A 275 LTLIQQISTEGDFPRDFDLDPTEAFVVVVNQNTDNATLYARDLTSGKLS 323 (347)
T ss_dssp EEEEEEEECSSSCCCEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEE
T ss_pred EEEeEEEecCCCCcCeEEECCCCCEEEEEEcCCCcEEEEEEeCCCCeEE
Confidence 35666666666778899999999999998875 799999 55667765
|
| >3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=2.9e-19 Score=194.68 Aligned_cols=235 Identities=9% Similarity=0.086 Sum_probs=191.1
Q ss_pred CCCeEEEEEcCCCCEEEEEeC-------CCeEEEEEcCCCCceeEEeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEE
Q 003236 597 TQWITDVRFSPSLSRLATSSA-------DRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWS 669 (837)
Q Consensus 597 ~~~I~~l~fspdg~~Latgs~-------Dg~I~IWDl~~~~~~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwD 669 (837)
...+..++|+|++++|++++. ++.|.+||..+++. +..+.. ...+.+++|+|+++.+++++..++.|.+||
T Consensus 40 ~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~-~~~~~~-~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d 117 (353)
T 3vgz_A 40 GKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEV-TQAIHN-DLKPFGATINNTTQTLWFGNTVNSAVTAID 117 (353)
T ss_dssp ESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCE-EEEEEE-SSCCCSEEEETTTTEEEEEETTTTEEEEEE
T ss_pred ccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeE-EEEEec-CCCcceEEECCCCCEEEEEecCCCEEEEEe
Confidence 456889999999999888874 56899999998764 444442 345788999999998888888889999999
Q ss_pred CCCCeeeeEEecCC----------CeeEEEEecCCCEEEEEEc--CCeEEEEECCCCeEEEEEcCCCCCEEEEEEcCCCC
Q 003236 670 INNGSCAGVFKCQS----------GATQMRFQPRLGRILAAAI--ENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGE 737 (837)
Q Consensus 670 l~t~~~i~~~~~~~----------~i~sl~~sp~g~~llags~--dg~I~iwDl~s~~~~~~l~~h~~~V~sl~~spdg~ 737 (837)
+.+++.+..+.... .+.+++|+|+++++++++. ++.|.+||+++++.+..+..+...+.+++|+|+++
T Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~dg~ 197 (353)
T 3vgz_A 118 AKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQNTGKMSTGLALDSEGK 197 (353)
T ss_dssp TTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEECCCCTTCCCCEEETTTT
T ss_pred CCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEecCCCCccceEEECCCCC
Confidence 99999888887633 1688999999998888873 68899999999999988876666788999999999
Q ss_pred EEEEEe-CCeEEEEEcCCCCCceeEEEeec----CCCceEEEEEeCCCCEEEEEEcC-CeEEEEECCCCcEEEeccCCCC
Q 003236 738 YLASVS-DELVRVWSIGSGSKGECIHELSC----TGNKFHSCVFHPTFPSLLVIGCY-ETLELWNMTENKTLTLSAHDKL 811 (837)
Q Consensus 738 ~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~----~~~~I~sv~fspdg~~L~sgs~d-g~I~IwDl~s~~~~~l~~h~~~ 811 (837)
+|+++. ++.|.+||+.++ +.+..+.. +...+..++|+|+++++++++.+ +.|.+||+.+++.+.......
T Consensus 198 ~l~~~~~~~~i~~~d~~~~---~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~- 273 (353)
T 3vgz_A 198 RLYTTNADGELITIDTADN---KILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNILAKVAAPE- 273 (353)
T ss_dssp EEEEECTTSEEEEEETTTT---EEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCEEEEEECSS-
T ss_pred EEEEEcCCCeEEEEECCCC---eEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCC-
Confidence 999888 899999999887 55555443 45568889999999988888765 799999999998874332222
Q ss_pred eeEEEEeCCCCEEEEEE-CCCcEEEeC
Q 003236 812 VSSLAASTVNGMVASAS-HDKCVKIWK 837 (837)
Q Consensus 812 V~sla~spdg~~LaSgs-~DG~I~IWd 837 (837)
..+++|+|+++++++++ .++.|.+||
T Consensus 274 ~~~~~~s~dg~~l~v~~~~~~~v~~~d 300 (353)
T 3vgz_A 274 SLAVLFNPARNEAYVTHRQAGKVSVID 300 (353)
T ss_dssp CCCEEEETTTTEEEEEETTTTEEEEEE
T ss_pred CceEEECCCCCEEEEEECCCCeEEEEE
Confidence 36799999999666555 689999996
|
| >2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=5.9e-20 Score=221.06 Aligned_cols=245 Identities=14% Similarity=0.132 Sum_probs=184.5
Q ss_pred EecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCC-----CeEEEEeccCCCC--------------eEEEEEcCCCC
Q 003236 550 LIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES-----FTVKSTLEEHTQW--------------ITDVRFSPSLS 610 (837)
Q Consensus 550 ~l~~H~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t-----~~~~~~l~~h~~~--------------I~~l~fspdg~ 610 (837)
.+..|...|.+++|||||++||++ .|+.|++||+.+ ++.......+... +.+++|+|||+
T Consensus 115 ~l~~~~~~~~~~~~SpdG~~la~~-~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~ 193 (706)
T 2z3z_A 115 YLFDTNEETASLDFSPVGDRVAYV-RNHNLYIARGGKLGEGMSRAIAVTIDGTETLVYGQAVHQREFGIEKGTFWSPKGS 193 (706)
T ss_dssp EEECCTTCCTTCEECTTSSEEEEE-ETTEEEEEECBCTTSCCCCCEESCSCCBTTEEESSCCGGGCTTCCCSEEECTTSS
T ss_pred EccCCcccccCCcCCCCCCEEEEE-ECCeEEEEecCcccccCCCcEEeccCCCCCeEcccchhhhhcCCCceEEECCCCC
Confidence 344567779999999999999985 689999999998 7766555444443 48999999999
Q ss_pred EEEEEe---------------------------------CCCeEEEEEcCCCCceeEEe-eccccceEEEEEcCCCCeEE
Q 003236 611 RLATSS---------------------------------ADRTVRVWDTENPDYSLRTF-TGHSTTVMSLDFHPSKEDLL 656 (837)
Q Consensus 611 ~Latgs---------------------------------~Dg~I~IWDl~~~~~~~~~~-~~h~~~V~sl~fspdg~~ll 656 (837)
+|++++ .+..|++||+.+++...... ..|...+.+++|+|+++.++
T Consensus 194 ~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~ 273 (706)
T 2z3z_A 194 CLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQTGEPKEKFLTNLSWSPDENILY 273 (706)
T ss_dssp EEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCCCSCTTCEEEEEEECTTSSEEE
T ss_pred EEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeeccCCCCceeEeeEEEECCCCEEE
Confidence 999998 44789999998765322211 25677899999999998666
Q ss_pred EEEeCCC-----cEEEEECCCC-eeeeEEec--CC---CeeEEEEec--CCCEEEEEEcCCeEEEEECC-CCeEEEEEcC
Q 003236 657 CSCDNNS-----EIRYWSINNG-SCAGVFKC--QS---GATQMRFQP--RLGRILAAAIENYISILDVE-TQVCRLKLQG 722 (837)
Q Consensus 657 asgs~Dg-----~I~vwDl~t~-~~i~~~~~--~~---~i~sl~~sp--~g~~llags~dg~I~iwDl~-s~~~~~~l~~ 722 (837)
+++ .++ .|++||+.++ ........ .. .+.++.|+| ++++++++..++.+.||++. ++..+..+..
T Consensus 274 ~~~-~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~~~~~~~l~~ 352 (706)
T 2z3z_A 274 VAE-VNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTFLPGSNNQFIWQSRRDGWNHLYLYDTTGRLIRQVTK 352 (706)
T ss_dssp EEE-ECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEECTTCSSEEEEEECTTSSCEEEEEETTSCEEEECCC
T ss_pred EEE-eCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCceeecCCCCEEEEEEccCCccEEEEEECCCCEEEecCC
Confidence 544 343 8999999998 44333322 11 246789999 99888888888888888876 5677777887
Q ss_pred CCCCEEE-EEEcCCCCEEEEEe--CC----eEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcC----Ce
Q 003236 723 HKNQVHS-VCWNTSGEYLASVS--DE----LVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCY----ET 791 (837)
Q Consensus 723 h~~~V~s-l~~spdg~~Lasgs--Dg----~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fspdg~~L~sgs~d----g~ 791 (837)
|...+.+ ++|+|+++.|+.++ ++ .|..||+.++. ...+. +...+.+++|+|++++|++.+.+ +.
T Consensus 353 ~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~~~----~~~l~-~~~~~~~~~~spdg~~l~~~~~~~~~p~~ 427 (706)
T 2z3z_A 353 GEWEVTNFAGFDPKGTRLYFESTEASPLERHFYCIDIKGGK----TKDLT-PESGMHRTQLSPDGSAIIDIFQSPTVPRK 427 (706)
T ss_dssp SSSCEEEEEEECTTSSEEEEEESSSCTTCBEEEEEETTCCC----CEESC-CSSSEEEEEECTTSSEEEEEEECSSCSCE
T ss_pred CCeEEEeeeEEcCCCCEEEEEecCCCCceEEEEEEEcCCCC----ceecc-CCCceEEEEECCCCCEEEEEecCCCCCcE
Confidence 8888877 79999999887665 44 66677776652 22222 45678999999999998877654 36
Q ss_pred EEEEECCCCc
Q 003236 792 LELWNMTENK 801 (837)
Q Consensus 792 I~IwDl~s~~ 801 (837)
|++||+.+++
T Consensus 428 i~l~d~~~~~ 437 (706)
T 2z3z_A 428 VTVTNIGKGS 437 (706)
T ss_dssp EEEEESSSCE
T ss_pred EEEEECCCCe
Confidence 9999998887
|
| >3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A | Back alignment and structure |
|---|
Probab=99.85 E-value=5.1e-19 Score=194.80 Aligned_cols=267 Identities=9% Similarity=0.079 Sum_probs=188.8
Q ss_pred CCCEEEEEE----CCCcEEEEeC--CCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCC----CeEEEEEcCCC--Cc-e
Q 003236 566 DGKLLATGG----HDKKAVLWCT--ESFTVKSTLEEHTQWITDVRFSPSLSRLATSSAD----RTVRVWDTENP--DY-S 632 (837)
Q Consensus 566 dg~~Lasgs----~Dg~I~VWd~--~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~D----g~I~IWDl~~~--~~-~ 632 (837)
...++++|+ .++.|++|++ ++++.......+...+..++|+|++++|++++.+ +.|.+|++... .. .
T Consensus 12 ~~~~~~vg~y~~~~~~~i~~~~~d~~~g~~~~~~~~~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~ 91 (361)
T 3scy_A 12 SELTMLVGTYTSGNSKGIYTFRFNEETGESLPLSDAEVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHL 91 (361)
T ss_dssp GEEEEEEEECCSSSCCEEEEEEEETTTCCEEEEEEEECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEE
T ss_pred CceEEEEEeccCCCCCCEEEEEEeCCCCCEEEeecccCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEE
Confidence 344566664 3568888865 4555443222267788899999999999999886 79999998764 21 2
Q ss_pred eEEeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeee----EEec-----------CCCeeEEEEecCCCEE
Q 003236 633 LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAG----VFKC-----------QSGATQMRFQPRLGRI 697 (837)
Q Consensus 633 ~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~----~~~~-----------~~~i~sl~~sp~g~~l 697 (837)
+.....+...+..+++ ++..++++...++.|.+|++.....+. .+.. ...+.+++|+|+++++
T Consensus 92 ~~~~~~~~~~p~~~~~--dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l 169 (361)
T 3scy_A 92 LNTQKTMGADPCYLTT--NGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYL 169 (361)
T ss_dssp EEEEECSSSCEEEEEE--CSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEE
T ss_pred eeEeccCCCCcEEEEE--CCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEE
Confidence 2333335566778888 777777676678999999997543322 1111 1234789999999988
Q ss_pred EEEEc-CCeEEEEECCCCe-------E------EEEEcCCCCCEEEEEEcCCCCEEEEEe--CCeEEEEEcCCCCCceeE
Q 003236 698 LAAAI-ENYISILDVETQV-------C------RLKLQGHKNQVHSVCWNTSGEYLASVS--DELVRVWSIGSGSKGECI 761 (837)
Q Consensus 698 lags~-dg~I~iwDl~s~~-------~------~~~l~~h~~~V~sl~~spdg~~Lasgs--Dg~I~IwDl~s~~~~~~i 761 (837)
++++. ++.|.+|++.... . ......+...+.+++|+|||++|+++. ++.|.+||+.++.. ..+
T Consensus 170 ~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~-~~~ 248 (361)
T 3scy_A 170 LADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGML-DEI 248 (361)
T ss_dssp EEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEE-EEE
T ss_pred EEEeCCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCce-EEe
Confidence 77775 7899999887533 1 122233556788999999999887766 78999999986521 223
Q ss_pred EEee---cCCCceEEEEEeCCCCEEEEEEcC--CeEEEEECC--CCcEE---EeccCCCCeeEEEEeCCCCEEEEEE-CC
Q 003236 762 HELS---CTGNKFHSCVFHPTFPSLLVIGCY--ETLELWNMT--ENKTL---TLSAHDKLVSSLAASTVNGMVASAS-HD 830 (837)
Q Consensus 762 ~~~~---~~~~~I~sv~fspdg~~L~sgs~d--g~I~IwDl~--s~~~~---~l~~h~~~V~sla~spdg~~LaSgs-~D 830 (837)
..+. .+......++|+|+|++|+++..+ +.|.+|++. +++.. .+.. ...+.+++|+|||++|++++ .+
T Consensus 249 ~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~-g~~~~~~~~spdg~~l~~~~~~~ 327 (361)
T 3scy_A 249 QTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQLT-GIHPRNFIITPNGKYLLVACRDT 327 (361)
T ss_dssp EEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEEC-SSCCCEEEECTTSCEEEEEETTT
T ss_pred EEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEecC-CCCCceEEECCCCCEEEEEECCC
Confidence 3322 233557899999999999887765 799999985 45532 2333 56788999999999888887 67
Q ss_pred CcEEEe
Q 003236 831 KCVKIW 836 (837)
Q Consensus 831 G~I~IW 836 (837)
+.|.+|
T Consensus 328 ~~v~v~ 333 (361)
T 3scy_A 328 NVIQIF 333 (361)
T ss_dssp TEEEEE
T ss_pred CCEEEE
Confidence 899996
|
| >2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A | Back alignment and structure |
|---|
Probab=99.85 E-value=1.2e-19 Score=206.55 Aligned_cols=240 Identities=10% Similarity=0.090 Sum_probs=177.0
Q ss_pred CCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCC-----------eEE-----EEeccCCCCeEEEEEcCCCCEEE----E
Q 003236 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESF-----------TVK-----STLEEHTQWITDVRFSPSLSRLA----T 614 (837)
Q Consensus 555 ~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~-----------~~~-----~~l~~h~~~I~~l~fspdg~~La----t 614 (837)
...+.++++++++.+|++++.|+ |+||+.... ... ..+ .+...|++++|+|++++|+ +
T Consensus 36 ~~~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~l~~spdg~~lav~~~s 113 (434)
T 2oit_A 36 KERSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLV-PMKFPIHHLALSCDNLTLSACMMS 113 (434)
T ss_dssp CSCCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEE-CCSSCEEEEEECTTSCEEEEEEEE
T ss_pred CCCccEEEEecCCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccc-cCCCcccEEEEcCCCCEEEEEEec
Confidence 34588999999999999999887 888864311 111 112 3567899999999999999 7
Q ss_pred EeCCCeEEEEEcCCC-----Cc-----eeEEeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeeEEe-cCC
Q 003236 615 SSADRTVRVWDTENP-----DY-----SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK-CQS 683 (837)
Q Consensus 615 gs~Dg~I~IWDl~~~-----~~-----~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~-~~~ 683 (837)
++.|+.|+|||+.+. .. .+..+.+|...|.+++|+|++..+|++++.||+|++||++++..+.... +..
T Consensus 114 gs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~~~~~~~~~~ 193 (434)
T 2oit_A 114 SEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVKVCATLPSTV 193 (434)
T ss_dssp TTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEEEEEEECGGG
T ss_pred cCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCcceeeccCCCC
Confidence 888999999998753 11 2456677999999999999866788899999999999999986654443 456
Q ss_pred CeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEcCC-------CCCEEEEEEcCCCCEEEEEe--CC------eEE
Q 003236 684 GATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGH-------KNQVHSVCWNTSGEYLASVS--DE------LVR 748 (837)
Q Consensus 684 ~i~sl~~sp~g~~llags~dg~I~iwDl~s~~~~~~l~~h-------~~~V~sl~~spdg~~Lasgs--Dg------~I~ 748 (837)
.+.+++|+|++.+|++++.|+.|++||++ +.....+..| ...|.+++|++++.++++.+ || .++
T Consensus 194 ~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~~~~~~~v~ 272 (434)
T 2oit_A 194 AVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAADGTLETSPDVV 272 (434)
T ss_dssp CEEEEEECTTSSCEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCEEEEEEEEEETTEEEEEEEETTCCSSSCCEEE
T ss_pred ceeEEEEcCCCCEEEEEcCCCcEEEEccC-CcccccccCCcccCCCCceeEEEEEEecCceEEEEEccCCCccCCCCceE
Confidence 89999999999999999999999999998 5555555443 23799999999988887654 53 399
Q ss_pred EEEcCCCCC--ceeEEEee-------cCCCceEEEEEeCCCCEEEEEEcCC-eEEEEEC
Q 003236 749 VWSIGSGSK--GECIHELS-------CTGNKFHSCVFHPTFPSLLVIGCYE-TLELWNM 797 (837)
Q Consensus 749 IwDl~s~~~--~~~i~~~~-------~~~~~I~sv~fspdg~~L~sgs~dg-~I~IwDl 797 (837)
+|+++.... ......+. ........+.+.++.+.+++++... .|.|+..
T Consensus 273 i~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~dw~l~~v~s~~s~dv~vl~~ 331 (434)
T 2oit_A 273 MALLPKKEEKHPEIFVNFMEPCYGSCTERQHHYYLSYIEEWDLVLAASAASTEVSILAR 331 (434)
T ss_dssp EEECCCTTTCCCCEEEECCCSSCCCCSSSCCCEEEEEEGGGTEEEEEETTCSBCEEEEE
T ss_pred EEEeccCCCCCCcceEecccCCCCCCCCcCcceeeehhccCCEEEEecCCCCceeEEEe
Confidence 999986532 12222221 1222333444557778777776643 4555543
|
| >1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.84 E-value=2.2e-20 Score=225.34 Aligned_cols=271 Identities=11% Similarity=0.061 Sum_probs=199.4
Q ss_pred EEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEeccCCC---CeEEEEEcCCCCEEEEEeC---------CCeEEEEEcC
Q 003236 560 SCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQ---WITDVRFSPSLSRLATSSA---------DRTVRVWDTE 627 (837)
Q Consensus 560 sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~---~I~~l~fspdg~~Latgs~---------Dg~I~IWDl~ 627 (837)
+++|+|||+++++ +.|+.|++||+.+++....+..|.. .|.+++|+|||++|++++. ++.|++||+.
T Consensus 20 ~~~~s~dg~~~~~-~~d~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~ 98 (719)
T 1z68_A 20 FPNWISGQEYLHQ-SADNNIVLYNIETGQSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLS 98 (719)
T ss_dssp CCEESSSSEEEEE-CTTSCEEEEESSSCCEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETT
T ss_pred ccEECCCCeEEEE-cCCCCEEEEEcCCCcEEEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECC
Confidence 6899999965554 4699999999999998877766644 4899999999999999876 7899999998
Q ss_pred CCCcee-EEeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeeEEecC-------------------CCeeE
Q 003236 628 NPDYSL-RTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ-------------------SGATQ 687 (837)
Q Consensus 628 ~~~~~~-~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~~-------------------~~i~s 687 (837)
+++... ..+ ...+.+++|+|||+.++++ . ++.|++||+.++++....... ....+
T Consensus 99 ~g~~~~~~~l---~~~~~~~~~SPDG~~la~~-~-~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~ 173 (719)
T 1z68_A 99 NGEFVRGNEL---PRPIQYLCWSPVGSKLAYV-Y-QNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYA 173 (719)
T ss_dssp TTEECCSSCC---CSSBCCEEECSSTTCEEEE-E-TTEEEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCC
T ss_pred CCccccceec---CcccccceECCCCCEEEEE-E-CCeEEEEeCCCCCcEEEecCCCcCCeEcccccceeeeecccCccc
Confidence 765310 222 2568899999999876654 3 789999999988765433211 11248
Q ss_pred EEEecCCCEEEEEEcCC----------------------------------eEEEEECCCCeEE---E-----EEcCCCC
Q 003236 688 MRFQPRLGRILAAAIEN----------------------------------YISILDVETQVCR---L-----KLQGHKN 725 (837)
Q Consensus 688 l~~sp~g~~llags~dg----------------------------------~I~iwDl~s~~~~---~-----~l~~h~~ 725 (837)
+.|+|||+.|++++.|. .|++||+.+++.. . .+.+|..
T Consensus 174 ~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~ 253 (719)
T 1z68_A 174 LWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDY 253 (719)
T ss_dssp EEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCE
T ss_pred EEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCCCcc
Confidence 99999999999988652 7889999987642 1 1335788
Q ss_pred CEEEEEEcCCCCEEEEEe-C----CeEEEEE----cCCCCCceeEE-EeecCCCceE-----EEEEeCCCCEEEEE--Ec
Q 003236 726 QVHSVCWNTSGEYLASVS-D----ELVRVWS----IGSGSKGECIH-ELSCTGNKFH-----SCVFHPTFPSLLVI--GC 788 (837)
Q Consensus 726 ~V~sl~~spdg~~Lasgs-D----g~I~IwD----l~s~~~~~~i~-~~~~~~~~I~-----sv~fspdg~~L~sg--s~ 788 (837)
.+.+++|+||++++++.. . ..|.+|| +.++.....+. ....+...+. .++|+|||+.|+.. ..
T Consensus 254 ~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~ 333 (719)
T 1z68_A 254 YFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQEHIEESRTGWAGGFFVSTPVFSYDAISYYKIFSDK 333 (719)
T ss_dssp EEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEECCGGGEEEEECSSSCSSSSSCCCCEECTTSSCEEEEEECT
T ss_pred eEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCceEEEEecccccCCceEccccCCccEECCCCCeEEEEEEcc
Confidence 899999999988777754 2 2588899 76653211111 0134555555 78999999976653 33
Q ss_pred CC--eEEEEECCCCcEEEeccCCCCeeEEEEeCCCCEEEEEECC-----CcEEEeC
Q 003236 789 YE--TLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHD-----KCVKIWK 837 (837)
Q Consensus 789 dg--~I~IwDl~s~~~~~l~~h~~~V~sla~spdg~~LaSgs~D-----G~I~IWd 837 (837)
++ .|++||+.+++...+..+...|..+.++ +++.|+..+.+ +.++||+
T Consensus 334 ~g~~~l~~~~~~~~~~~~lt~~~~~v~~~~~~-d~~~i~~~~~~~~~~~~~~~l~~ 388 (719)
T 1z68_A 334 DGYKHIHYIKDTVENAIQITSGKWEAINIFRV-TQDSLFYSSNEFEEYPGRRNIYR 388 (719)
T ss_dssp TSCEEEEEESSCSTTCEECSCSSSCEEEEEEE-CSSEEEEEESCGGGCTTCBEEEE
T ss_pred CCceEEEEEECCCCceEecccCceEEEEEEEE-eCCEEEEEEecCCCCCceEEEEE
Confidence 44 7888899888876777777778888888 88877776655 7788884
|
| >1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1 | Back alignment and structure |
|---|
Probab=99.84 E-value=1.9e-18 Score=191.48 Aligned_cols=267 Identities=10% Similarity=0.052 Sum_probs=187.1
Q ss_pred EEEEEECC--CcEEEEeC--CCCeEEEE--ec-cCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcC-CCCceeEEeec-c
Q 003236 569 LLATGGHD--KKAVLWCT--ESFTVKST--LE-EHTQWITDVRFSPSLSRLATSSADRTVRVWDTE-NPDYSLRTFTG-H 639 (837)
Q Consensus 569 ~Lasgs~D--g~I~VWd~--~t~~~~~~--l~-~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~-~~~~~~~~~~~-h 639 (837)
+|++|+.. +.|.+|++ ++++.... .. .....+..++|+|++++|++++.+ .|.+|++. +++. ...... .
T Consensus 4 ~~~vg~~~~~~~i~~~~~d~~~g~l~~~~~~~~~~~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~-~~~~~~~~ 81 (365)
T 1jof_A 4 HLMIGTWTPPGAIFTVQFDDEKLTCKLIKRTEIPQDEPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEI-VHEASHPI 81 (365)
T ss_dssp EEEEEESSSSCEEEEEEEETTTTEEEEEEEEECCTTCCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEE-EEEEEEEC
T ss_pred EEEEEEccCCCcEEEEEEECCCCCEEEeeEEccCCCCCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCE-EEeeEeec
Confidence 45666653 46877764 45654322 21 234568899999999999999888 99999997 5543 222211 1
Q ss_pred ccceEEEEEcCCCCe-EEEEEe-------------CCCcEEEEECC-CCeeeeEEe-----cCCCeeEEEEecCCCEEEE
Q 003236 640 STTVMSLDFHPSKED-LLCSCD-------------NNSEIRYWSIN-NGSCAGVFK-----CQSGATQMRFQPRLGRILA 699 (837)
Q Consensus 640 ~~~V~sl~fspdg~~-llasgs-------------~Dg~I~vwDl~-t~~~i~~~~-----~~~~i~sl~~sp~g~~lla 699 (837)
.+.+.+++|+|+++. ++++++ .++.+.+|++. .++....+. ....+.+++|+|+++++++
T Consensus 82 ~g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~ 161 (365)
T 1jof_A 82 GGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYS 161 (365)
T ss_dssp CSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEE
T ss_pred CCCCccEEECCCCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEE
Confidence 123667899999885 344543 68999999997 466554443 3457899999999999888
Q ss_pred EEc-CCeEEEEECC-CCeEE--EEEc--CCCCCEEEEEEcCCCCEEEEEe--CCeEEEEEcCC--CCCce---eEEEeec
Q 003236 700 AAI-ENYISILDVE-TQVCR--LKLQ--GHKNQVHSVCWNTSGEYLASVS--DELVRVWSIGS--GSKGE---CIHELSC 766 (837)
Q Consensus 700 gs~-dg~I~iwDl~-s~~~~--~~l~--~h~~~V~sl~~spdg~~Lasgs--Dg~I~IwDl~s--~~~~~---~i~~~~~ 766 (837)
+.. ++.|.+||+. +++.. ..+. .|...+..++|+|||++|+++. ++.|.+|++.. +.... .+..+..
T Consensus 162 ~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~ 241 (365)
T 1jof_A 162 ADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPP 241 (365)
T ss_dssp EETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCT
T ss_pred EcCCCCEEEEEEECCCCCEEEeeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCC
Confidence 775 6799999998 66543 3343 2456799999999999988876 67999998763 32110 1112211
Q ss_pred C----CC------ceEEEE-EeCCCCEEEEEEcCC------eEEEEECC-CCcEEE----eccCCCCeeEEEEeC---CC
Q 003236 767 T----GN------KFHSCV-FHPTFPSLLVIGCYE------TLELWNMT-ENKTLT----LSAHDKLVSSLAAST---VN 821 (837)
Q Consensus 767 ~----~~------~I~sv~-fspdg~~L~sgs~dg------~I~IwDl~-s~~~~~----l~~h~~~V~sla~sp---dg 821 (837)
. .. .+..++ |+|||++|++++.+. .|.+|++. +++... ...+...+..++|+| ||
T Consensus 242 ~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~~~~a~sp~~~dg 321 (365)
T 1jof_A 242 GIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSD 321 (365)
T ss_dssp TCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCT
T ss_pred CcCCcccccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecCCCCcccceecCCCcCC
Confidence 1 11 478899 999999988876533 89999996 566543 223556678899999 89
Q ss_pred CEEEEEECC-CcEEEeC
Q 003236 822 GMVASASHD-KCVKIWK 837 (837)
Q Consensus 822 ~~LaSgs~D-G~I~IWd 837 (837)
++|++++.+ +.|.||+
T Consensus 322 ~~l~v~~~~~~~v~v~~ 338 (365)
T 1jof_A 322 EWMAITDDQEGWLEIYR 338 (365)
T ss_dssp TEEEEECSSSCEEEEEE
T ss_pred CEEEEEEcCCCeEEEEE
Confidence 999999864 8999995
|
| >3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=99.82 E-value=2.2e-19 Score=198.79 Aligned_cols=272 Identities=12% Similarity=0.026 Sum_probs=192.3
Q ss_pred eEEEEEcCCCCEEEEEECC---CcEEEEeCCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeE
Q 003236 558 VESCHFSPDGKLLATGGHD---KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLR 634 (837)
Q Consensus 558 V~sl~fSpdg~~Lasgs~D---g~I~VWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~~~~~~~ 634 (837)
+.+++|+|||++|+.+..+ ..|++||+.+++.......+...+..+.|+||+++|+.++.++.|++||+.+++. ..
T Consensus 38 ~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~~~~-~~ 116 (396)
T 3c5m_A 38 FYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQLTEGKGDNTFGGFISTDERAFFYVKNELNLMKVDLETLEE-QV 116 (396)
T ss_dssp TTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEECCCSSCBCTTTCEECTTSSEEEEEETTTEEEEEETTTCCE-EE
T ss_pred eecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEEeecCCCCccccceECCCCCEEEEEEcCCcEEEEECCCCCc-EE
Confidence 7788999999998877543 3688899998876654443333334488999999999999999999999987653 33
Q ss_pred EeeccccceEE-------------------EEEcCCCCeEEEEE----eCCCcEEEEECCCCeeeeEEecCCCeeEEEEe
Q 003236 635 TFTGHSTTVMS-------------------LDFHPSKEDLLCSC----DNNSEIRYWSINNGSCAGVFKCQSGATQMRFQ 691 (837)
Q Consensus 635 ~~~~h~~~V~s-------------------l~fspdg~~llasg----s~Dg~I~vwDl~t~~~i~~~~~~~~i~sl~~s 691 (837)
....+...... +.|+|++..+++.. ..+..|++||+.+++..........+..+.|+
T Consensus 117 ~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~s 196 (396)
T 3c5m_A 117 IYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIETGELEVIHQDTAWLGHPIYR 196 (396)
T ss_dssp EEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEEEETTTCCEEEEEEESSCEEEEEEE
T ss_pred EEecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcceEEEEECCCCcEEeeccCCcccccceEC
Confidence 33333332222 34677776554332 45678999999998887777767788999999
Q ss_pred c-CCCEEEEEEcC------CeEEEEECCCCeEEEEEcCC-CCCEEEEEEcCCCCEEEEEe-C-----CeEEEEEcCCCCC
Q 003236 692 P-RLGRILAAAIE------NYISILDVETQVCRLKLQGH-KNQVHSVCWNTSGEYLASVS-D-----ELVRVWSIGSGSK 757 (837)
Q Consensus 692 p-~g~~llags~d------g~I~iwDl~s~~~~~~l~~h-~~~V~sl~~spdg~~Lasgs-D-----g~I~IwDl~s~~~ 757 (837)
| +++.|+.++.+ ..|.+||+..+......... ...+..++|+|||++|+.++ + +.|++||+.++..
T Consensus 197 p~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~ 276 (396)
T 3c5m_A 197 PFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVRKIKEHAEGESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPETLEN 276 (396)
T ss_dssp TTEEEEEEEEECSCSSSCSCCCEEEETTSCCCEESSCCCTTEEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTTCCE
T ss_pred CCCCCEEEEEecCCCCCCCceEEEEECCCCceeEeeccCCCccccceEECCCCCEEEEEecCCCCccceEEEEECCCCCe
Confidence 9 77777776653 36889998766533322211 23578899999999877665 3 3499999987632
Q ss_pred ceeEEEeecCCCceEEEEEeC-CCCEEEEEE----------------cCCeEEEEECCCCcEEEeccCCC----------
Q 003236 758 GECIHELSCTGNKFHSCVFHP-TFPSLLVIG----------------CYETLELWNMTENKTLTLSAHDK---------- 810 (837)
Q Consensus 758 ~~~i~~~~~~~~~I~sv~fsp-dg~~L~sgs----------------~dg~I~IwDl~s~~~~~l~~h~~---------- 810 (837)
..+..+. ... +.|+| +++.|++++ .+..|++||+.+++...+..+..
T Consensus 277 -~~l~~~~----~~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~ 350 (396)
T 3c5m_A 277 -EEVMVMP----PCS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAKSAQKLCKHSTSWDVLDGDRQ 350 (396)
T ss_dssp -EEEEECC----SEE-EEEECSSSSEEEEEECCC----------CCCCCCEEEEEETTTTBCCEEEECCCCCCCBTTBSS
T ss_pred -EEeeeCC----CCC-CCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEecccCceEEccCCCCcccccccccc
Confidence 2222221 233 89999 999887755 23689999999887666665554
Q ss_pred -CeeEEEEeCCCCEEEEEEC-CCcEEEe
Q 003236 811 -LVSSLAASTVNGMVASASH-DKCVKIW 836 (837)
Q Consensus 811 -~V~sla~spdg~~LaSgs~-DG~I~IW 836 (837)
.+..++|+|||+.|+.++. ++...||
T Consensus 351 ~~~~~~~~s~dg~~l~~~s~~~~~~~l~ 378 (396)
T 3c5m_A 351 ITHPHPSFTPNDDGVLFTSDFEGVPAIY 378 (396)
T ss_dssp TTCCCCEECTTSSEEEEEECTTSSCEEE
T ss_pred CCCCCceEccCCCeEEEEecCCCCceEE
Confidence 2667899999998887764 5666665
|
| >1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B* | Back alignment and structure |
|---|
Probab=99.82 E-value=2.6e-18 Score=186.55 Aligned_cols=272 Identities=10% Similarity=0.069 Sum_probs=188.6
Q ss_pred ccCCCeEEcccCCCceEEeecCCCCCCCCccccccccCCCeeeeEEEEecCCC-CCeEEEEEcCCCCEEE-EEECCCcEE
Q 003236 503 TDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPAST-SKVESCHFSPDGKLLA-TGGHDKKAV 580 (837)
Q Consensus 503 ~~~~~~v~~Gs~D~~v~~w~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~H~-~~V~sl~fSpdg~~La-sgs~Dg~I~ 580 (837)
.....++++++.++.|.+|..... ..+..+..+. ..+.+++|+|||++++ ++..++.|.
T Consensus 8 ~~~~~~~v~~~~~~~v~~~d~~~~-------------------~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~ 68 (349)
T 1jmx_B 8 KAGHEYMIVTNYPNNLHVVDVASD-------------------TVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIY 68 (349)
T ss_dssp CTTCEEEEEEETTTEEEEEETTTT-------------------EEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEE
T ss_pred cCCCEEEEEeCCCCeEEEEECCCC-------------------cEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEE
Confidence 445677888888999999965332 1122333222 2577899999998665 455689999
Q ss_pred EEeCCCCeEEEEeccCC------CCeEEEEEcCCCCEEEEEeCC------------CeEEEEEcCCCCc--eeEEeeccc
Q 003236 581 LWCTESFTVKSTLEEHT------QWITDVRFSPSLSRLATSSAD------------RTVRVWDTENPDY--SLRTFTGHS 640 (837)
Q Consensus 581 VWd~~t~~~~~~l~~h~------~~I~~l~fspdg~~Latgs~D------------g~I~IWDl~~~~~--~~~~~~~h~ 640 (837)
+||+.+++.+..+..+. ..+.+++|+|++++|++++.+ +.|.+||+.+++. .+..+. +.
T Consensus 69 ~~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~-~~ 147 (349)
T 1jmx_B 69 GIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFP-MP 147 (349)
T ss_dssp EEETTTTEEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEE-CC
T ss_pred EEeCCCCcEEEEEEcccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeecc-CC
Confidence 99999998887775332 347899999999999999865 8999999987432 123333 34
Q ss_pred cceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeeEEecCC-------------------------CeeEEEEecCCC
Q 003236 641 TTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQS-------------------------GATQMRFQPRLG 695 (837)
Q Consensus 641 ~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~~~-------------------------~i~sl~~sp~g~ 695 (837)
..+.+++|+|++. +++ ++ +.|++||+.+++.+..+.... ....+.+++++.
T Consensus 148 ~~~~~~~~s~dg~-l~~-~~--~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 223 (349)
T 1jmx_B 148 RQVYLMRAADDGS-LYV-AG--PDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDK 223 (349)
T ss_dssp SSCCCEEECTTSC-EEE-ES--SSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC----
T ss_pred CcccceeECCCCc-EEE-cc--CcEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCc
Confidence 4689999999988 654 43 349999999998887765432 233455554432
Q ss_pred EEEEEE-cCCeEEEEECCCCeE-EEEEcCCCCCEEEEEEcC-CCCEEEEEeCCeEEEEEcCCCCCceeEEEeecCCCceE
Q 003236 696 RILAAA-IENYISILDVETQVC-RLKLQGHKNQVHSVCWNT-SGEYLASVSDELVRVWSIGSGSKGECIHELSCTGNKFH 772 (837)
Q Consensus 696 ~llags-~dg~I~iwDl~s~~~-~~~l~~h~~~V~sl~~sp-dg~~LasgsDg~I~IwDl~s~~~~~~i~~~~~~~~~I~ 772 (837)
...... ....+..+|..+++. ...+..+...+.+++|+| ++++|+++ ++.|++||+.++ +.+..+.. ...+.
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~-~~~v~~~d~~~~---~~~~~~~~-~~~~~ 298 (349)
T 1jmx_B 224 QDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV-LNRLAKYDLKQR---KLIKAANL-DHTYY 298 (349)
T ss_dssp ---CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE-ESEEEEEETTTT---EEEEEEEC-SSCCC
T ss_pred CCccccccceeEEEEeccCCcEEecccccCCCcceeeEecCCCCCEEEEE-cCeEEEEECccC---eEEEEEcC-CCCcc
Confidence 111100 111222355555432 222333666889999999 99999988 889999999887 55555543 34577
Q ss_pred EEEEeCCCCEEEEEEcCCeEEEEECCCCcEE
Q 003236 773 SCVFHPTFPSLLVIGCYETLELWNMTENKTL 803 (837)
Q Consensus 773 sv~fspdg~~L~sgs~dg~I~IwDl~s~~~~ 803 (837)
+++|+|++++|++++.++.|++||+.+++.+
T Consensus 299 ~~~~s~dg~~l~~~~~~~~v~v~d~~~~~~~ 329 (349)
T 1jmx_B 299 CVAFDKKGDKLYLGGTFNDLAVFNPDTLEKV 329 (349)
T ss_dssp EEEECSSSSCEEEESBSSEEEEEETTTTEEE
T ss_pred ceEECCCCCEEEEecCCCeEEEEecccccee
Confidence 8999999999999888899999999998877
|
| >1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.82 E-value=2.6e-19 Score=216.02 Aligned_cols=274 Identities=11% Similarity=0.020 Sum_probs=189.2
Q ss_pred CeEEEEEcCCCCEEEEEEC---------CCcEEEEeCCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcC
Q 003236 557 KVESCHFSPDGKLLATGGH---------DKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTE 627 (837)
Q Consensus 557 ~V~sl~fSpdg~~Lasgs~---------Dg~I~VWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~ 627 (837)
.|.+++|||||++||+++. ++.|++||+.+++.+... .....+.+++|+|||+.|+++. |+.|++||+.
T Consensus 61 ~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~~~~-~l~~~~~~~~~SPDG~~la~~~-~~~i~~~~~~ 138 (719)
T 1z68_A 61 NASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSNGEFVRGN-ELPRPIQYLCWSPVGSKLAYVY-QNNIYLKQRP 138 (719)
T ss_dssp TCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSS-CCCSSBCCEEECSSTTCEEEEE-TTEEEEESST
T ss_pred ceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECCCCccccce-ecCcccccceECCCCCEEEEEE-CCeEEEEeCC
Confidence 4899999999999999876 789999999998773111 1135689999999999999986 7899999998
Q ss_pred CCCceeEEeeccccce-----------------EEEEEcCCCCeEEEEEeCCC---------------------------
Q 003236 628 NPDYSLRTFTGHSTTV-----------------MSLDFHPSKEDLLCSCDNNS--------------------------- 663 (837)
Q Consensus 628 ~~~~~~~~~~~h~~~V-----------------~sl~fspdg~~llasgs~Dg--------------------------- 663 (837)
++........++...| .+++|+|||+.++++...++
T Consensus 139 ~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g 218 (719)
T 1z68_A 139 GDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAG 218 (719)
T ss_dssp TSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTT
T ss_pred CCCcEEEecCCCcCCeEcccccceeeeecccCcccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCC
Confidence 7664322223333322 48999999987765543321
Q ss_pred ------cEEEEECCCCeee--eEE-------ecCCCeeEEEEecCCCEEEEEEcC----CeEEEEE----CCCCeEEEEE
Q 003236 664 ------EIRYWSINNGSCA--GVF-------KCQSGATQMRFQPRLGRILAAAIE----NYISILD----VETQVCRLKL 720 (837)
Q Consensus 664 ------~I~vwDl~t~~~i--~~~-------~~~~~i~sl~~sp~g~~llags~d----g~I~iwD----l~s~~~~~~l 720 (837)
.|++||+.+++.. ..+ .+...+..++|+|++..+++.... ..|.+|| +.++++...+
T Consensus 219 ~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~ 298 (719)
T 1z68_A 219 AKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQ 298 (719)
T ss_dssp SCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEECCGGG
T ss_pred CCCCeeEEEEEECCCCCccceeEccCCccCCCCcceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCceEEEE
Confidence 7889999987753 111 123357899999996655554332 2488999 8777665444
Q ss_pred ----cCCCCCEE-----EEEEcCCCCEEEE--Ee-CC--eEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEE
Q 003236 721 ----QGHKNQVH-----SVCWNTSGEYLAS--VS-DE--LVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVI 786 (837)
Q Consensus 721 ----~~h~~~V~-----sl~~spdg~~Las--gs-Dg--~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fspdg~~L~sg 786 (837)
..|...+. ++.|+|||+.|+. .. ++ .|.+||+.++. ...+..+...+..+.++ +++.|++.
T Consensus 299 ~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~----~~~lt~~~~~v~~~~~~-d~~~i~~~ 373 (719)
T 1z68_A 299 EHIEESRTGWAGGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVEN----AIQITSGKWEAINIFRV-TQDSLFYS 373 (719)
T ss_dssp EEEEECSSSCSSSSSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCSTT----CEECSCSSSCEEEEEEE-CSSEEEEE
T ss_pred ecccccCCceEccccCCccEECCCCCeEEEEEEccCCceEEEEEECCCCc----eEecccCceEEEEEEEE-eCCEEEEE
Confidence 35777776 8899999996554 33 55 57777776652 33444455667788877 88888888
Q ss_pred EcC-----CeEEEEECC--CC--cEEEec----cCCCCeeEEEEeCCCCEEEE-EECC--CcEEEeC
Q 003236 787 GCY-----ETLELWNMT--EN--KTLTLS----AHDKLVSSLAASTVNGMVAS-ASHD--KCVKIWK 837 (837)
Q Consensus 787 s~d-----g~I~IwDl~--s~--~~~~l~----~h~~~V~sla~spdg~~LaS-gs~D--G~I~IWd 837 (837)
+.+ +.+++|.+. ++ +...+. +|...+..+.|++++++|+. ++.+ ..+.+||
T Consensus 374 ~~~~~~~~~~~~l~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~s~dg~~l~~~~s~~~~p~~~l~d 440 (719)
T 1z68_A 374 SNEFEEYPGRRNIYRISIGSYPPSKKCVTCHLRKERCQYYTASFSDYAKYYALVCYGPGIPISTLHD 440 (719)
T ss_dssp ESCGGGCTTCBEEEEEECSSSSCCEEESSTTTTTTTBCBEEEEECGGGSSEEEEECCBSSCEEEEEC
T ss_pred EecCCCCCceEEEEEEeCCCCCCCceeccCccCCCCCceEEEEECCCCCEEEEEcCCCCCCeEEEEE
Confidence 775 677777764 34 223332 26677889999999987664 4333 3466664
|
| >1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1 | Back alignment and structure |
|---|
Probab=99.81 E-value=1.8e-17 Score=183.58 Aligned_cols=246 Identities=12% Similarity=0.076 Sum_probs=175.8
Q ss_pred CCCCeEEEEEcCCCCEEEEEECCCcEEEEeCC-CCeEEEEeccC-CCCeEEEEEcCCCCE--EEEEe-------------
Q 003236 554 STSKVESCHFSPDGKLLATGGHDKKAVLWCTE-SFTVKSTLEEH-TQWITDVRFSPSLSR--LATSS------------- 616 (837)
Q Consensus 554 H~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~-t~~~~~~l~~h-~~~I~~l~fspdg~~--Latgs------------- 616 (837)
+...+..++|+|||++|++++.+ .|.+|++. +++........ .+.+.+++|+|++++ +++++
T Consensus 38 ~~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~~g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~ 116 (365)
T 1jof_A 38 QDEPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEASHPIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYK 116 (365)
T ss_dssp TTCCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEEEEEECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESS
T ss_pred CCCCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEEeeEeecCCCCccEEECCCCCEEEEEEecCCcceeccceeec
Confidence 44568899999999999999888 99999997 77765433211 133667899999994 55553
Q ss_pred CCCeEEEEEcCCCCceeEEee----ccccceEEEEEcCCCCeEEEEEeCCCcEEEEECC-CCeeee--EEe---cCCCee
Q 003236 617 ADRTVRVWDTENPDYSLRTFT----GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSIN-NGSCAG--VFK---CQSGAT 686 (837)
Q Consensus 617 ~Dg~I~IWDl~~~~~~~~~~~----~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~-t~~~i~--~~~---~~~~i~ 686 (837)
.++.+.+|++.........+. .+...+.+++|+|+|+.++++...++.|++||+. +++... .+. ....+.
T Consensus 117 ~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~ 196 (365)
T 1jof_A 117 FAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPR 196 (365)
T ss_dssp SCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEE
T ss_pred CCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCCCCCC
Confidence 689999999974322222222 2456799999999998766555457899999998 676532 333 145689
Q ss_pred EEEEecCCCEEEEEEc-CCeEEEEECC--CCeEE---EEEcC-------CCC------CEEEEE-EcCCCCEEEEEe--C
Q 003236 687 QMRFQPRLGRILAAAI-ENYISILDVE--TQVCR---LKLQG-------HKN------QVHSVC-WNTSGEYLASVS--D 744 (837)
Q Consensus 687 sl~~sp~g~~llags~-dg~I~iwDl~--s~~~~---~~l~~-------h~~------~V~sl~-~spdg~~Lasgs--D 744 (837)
.++|+|+++++++++. ++.|.+|++. +++.. ..+.. |.. .+.+++ |+|||++|+++. +
T Consensus 197 ~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~ 276 (365)
T 1jof_A 197 WVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRAN 276 (365)
T ss_dssp EEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEES
T ss_pred EeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEECCCC
Confidence 9999999999988876 6899999765 45442 12221 122 588999 999999888765 3
Q ss_pred C-----eEEEEEcC-CCCCceeEE-EeecCCCceEEEEEeC---CCCEEEEEEcC-CeEEEEECCCCc
Q 003236 745 E-----LVRVWSIG-SGSKGECIH-ELSCTGNKFHSCVFHP---TFPSLLVIGCY-ETLELWNMTENK 801 (837)
Q Consensus 745 g-----~I~IwDl~-s~~~~~~i~-~~~~~~~~I~sv~fsp---dg~~L~sgs~d-g~I~IwDl~s~~ 801 (837)
+ .|.+|++. ++. ...+. ....+......++|+| ++++|++++.+ +.|.+|++....
T Consensus 277 ~~~~~~~i~v~~~~~~g~-~~~~~~~~~~~~~~~~~~a~sp~~~dg~~l~v~~~~~~~v~v~~~~~~~ 343 (365)
T 1jof_A 277 KFELQGYIAGFKLRDCGS-IEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDEF 343 (365)
T ss_dssp STTSCCEEEEEEECTTSC-EEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETTE
T ss_pred CCCCCCeEEEEEECCCCC-EEEeeeeeecCCCCcccceecCCCcCCCEEEEEEcCCCeEEEEEEchhh
Confidence 3 89999996 342 12111 2333445567789999 89999999875 799999987663
|
| >3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A | Back alignment and structure |
|---|
Probab=99.80 E-value=1.3e-18 Score=204.82 Aligned_cols=229 Identities=10% Similarity=0.062 Sum_probs=177.4
Q ss_pred CCCeEEEEEcCCCCEEEEEeC-CCeEEEEEcCCCCceeEEeeccc-cceEEEEEcCCCCeEEEEEeC---CCcEEEEECC
Q 003236 597 TQWITDVRFSPSLSRLATSSA-DRTVRVWDTENPDYSLRTFTGHS-TTVMSLDFHPSKEDLLCSCDN---NSEIRYWSIN 671 (837)
Q Consensus 597 ~~~I~~l~fspdg~~Latgs~-Dg~I~IWDl~~~~~~~~~~~~h~-~~V~sl~fspdg~~llasgs~---Dg~I~vwDl~ 671 (837)
..+|++++|+|||++||+++. ||++.||++.++. ...+..|. ..+.+++|+|+ .++++++. +....+|.+.
T Consensus 21 ~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~--~~~lt~~~~~~~~~~~~spd--~~l~~~~~~~g~~~~~l~~~~ 96 (582)
T 3o4h_A 21 AVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGE--TVKLNREPINSVLDPHYGVG--RVILVRDVSKGAEQHALFKVN 96 (582)
T ss_dssp HSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTE--EEECCSSCCSEECEECTTCS--EEEEEEECSTTSCCEEEEEEE
T ss_pred ccchheeecCCCCCeEEEEEccCCceeEEEEcCCC--cEeeecccccccccccCCCC--eEEEEeccCCCCcceEEEEEe
Confidence 557999999999999999887 9999999996543 44455555 68999999998 57766664 4445555443
Q ss_pred C---CeeeeEEecCCCeeEEEEecCCCE-EEEEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEe-C--
Q 003236 672 N---GSCAGVFKCQSGATQMRFQPRLGR-ILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-D-- 744 (837)
Q Consensus 672 t---~~~i~~~~~~~~i~sl~~sp~g~~-llags~dg~I~iwDl~s~~~~~~l~~h~~~V~sl~~spdg~~Lasgs-D-- 744 (837)
. +... .+.....+...+|+|+++. +++.+.++.+.+||+.+++.......+. .+++|+|||++|++++ +
T Consensus 97 ~~~~g~~~-~l~~~~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~~~~---~~~~~spDG~~la~~~~~~~ 172 (582)
T 3o4h_A 97 TSRPGEEQ-RLEAVKPMRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELARLPG---FGFVSDIRGDLIAGLGFFGG 172 (582)
T ss_dssp TTSTTCCE-ECTTSCSBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEEESS---CEEEEEEETTEEEEEEEEET
T ss_pred ccCCCccc-cccCCCCceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEEeecCCC---ceEEECCCCCEEEEEEEcCC
Confidence 2 2222 3333445667799999865 4455556667799999987665554333 7899999999999776 5
Q ss_pred --CeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCC--eEEEEECCCCcEEEeccCCCCeeEEE----
Q 003236 745 --ELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYE--TLELWNMTENKTLTLSAHDKLVSSLA---- 816 (837)
Q Consensus 745 --g~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fspdg~~L~sgs~dg--~I~IwDl~s~~~~~l~~h~~~V~sla---- 816 (837)
..|++||+.++. . ..+..+...+..++|+|||+.|+++..++ .|++||+.+++...+..|...+..++
T Consensus 173 ~~~~i~~~d~~~g~---~-~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 248 (582)
T 3o4h_A 173 GRVSLFTSNLSSGG---L-RVFDSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVEDLELPSKDFSSYRPTAI 248 (582)
T ss_dssp TEEEEEEEETTTCC---C-EEECCSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEEECCCSCSHHHHHCCSEE
T ss_pred CCeEEEEEcCCCCC---c-eEeecCCCccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEEEccCCCcChhhhhhccc
Confidence 689999998873 2 35566778899999999999999888888 89999999998876667777777777
Q ss_pred ----EeCCCCEEEEEECCCcEEEeC
Q 003236 817 ----ASTVNGMVASASHDKCVKIWK 837 (837)
Q Consensus 817 ----~spdg~~LaSgs~DG~I~IWd 837 (837)
|+|||.++++++.||.++||+
T Consensus 249 ~~~~~spdg~~~~~~~~~g~~~l~~ 273 (582)
T 3o4h_A 249 TWLGYLPDGRLAVVARREGRSAVFI 273 (582)
T ss_dssp EEEEECTTSCEEEEEEETTEEEEEE
T ss_pred cceeEcCCCcEEEEEEcCCcEEEEE
Confidence 999999999999999999995
|
| >4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ... | Back alignment and structure |
|---|
Probab=99.79 E-value=7.9e-18 Score=204.40 Aligned_cols=266 Identities=13% Similarity=0.075 Sum_probs=192.7
Q ss_pred CCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEeccCCCC-----eEEEEEcCCCCEEEEEeCC---------CeE
Q 003236 556 SKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQW-----ITDVRFSPSLSRLATSSAD---------RTV 621 (837)
Q Consensus 556 ~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~-----I~~l~fspdg~~Latgs~D---------g~I 621 (837)
....++.|+|||++|+++ |++|++||+.++++...+..|... ..++.|+|||++|++++.+ +.+
T Consensus 17 ~~~~~~~w~~dg~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~ 94 (740)
T 4a5s_A 17 LKLYSLRWISDHEYLYKQ--ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASY 94 (740)
T ss_dssp CCCCCEEECSSSEEEEEE--TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEE
T ss_pred ccccccEECCCCcEEEEc--CCcEEEEECCCCceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceEE
Confidence 346689999999998886 899999999999988888777643 2448899999999999876 566
Q ss_pred EEEEcCCCCceeEEeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeeEEecC-------------------
Q 003236 622 RVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ------------------- 682 (837)
Q Consensus 622 ~IWDl~~~~~~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~~------------------- 682 (837)
.+||+.+++ ...+..|...+...+|+|||+.++++ .++.|++||+.+++........
T Consensus 95 ~~~d~~~~~--~~~l~~~~~~~~~~~~SPdG~~la~~--~~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~ee~~ 170 (740)
T 4a5s_A 95 DIYDLNKRQ--LITEERIPNNTQWVTWSPVGHKLAYV--WNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVF 170 (740)
T ss_dssp EEEETTTTE--ECCSSCCCTTEEEEEECSSTTCEEEE--ETTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTS
T ss_pred EEEECCCCc--EEEcccCCCcceeeEECCCCCEEEEE--ECCeEEEEECCCCceEEEcCCCCccceecCcccccccchhc
Confidence 799999865 44566778889999999999977654 3789999999987755432211
Q ss_pred CCeeEEEEecCCCEEEEEEcCC------------------------------------eEEEEECCC---Ce--EEEEEc
Q 003236 683 SGATQMRFQPRLGRILAAAIEN------------------------------------YISILDVET---QV--CRLKLQ 721 (837)
Q Consensus 683 ~~i~sl~~sp~g~~llags~dg------------------------------------~I~iwDl~s---~~--~~~~l~ 721 (837)
.....+.|+|||+.|+.+..|. .|.+||+.+ +. ....+.
T Consensus 171 ~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~~l~ 250 (740)
T 4a5s_A 171 SAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQIT 250 (740)
T ss_dssp SSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCEEEEC
T ss_pred CCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcceEEEec
Confidence 1123489999999998876321 588899988 72 223333
Q ss_pred ------CCCCCEEEEEEcCCCCEEEEEe--C---CeEEEEEcCCCCC------ceeEEEeecCCCce-----EEEEEeCC
Q 003236 722 ------GHKNQVHSVCWNTSGEYLASVS--D---ELVRVWSIGSGSK------GECIHELSCTGNKF-----HSCVFHPT 779 (837)
Q Consensus 722 ------~h~~~V~sl~~spdg~~Lasgs--D---g~I~IwDl~s~~~------~~~i~~~~~~~~~I-----~sv~fspd 779 (837)
+|...+..++|+|||++++... + ..|++||+.++.. ...+. ...+...+ ..++|+||
T Consensus 251 ~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~-~~~~~~~v~~~~~~~p~fspD 329 (740)
T 4a5s_A 251 APASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHI-EMSTTGWVGRFRPSEPHFTLD 329 (740)
T ss_dssp CCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEE-EECSSSCSSSSSCCCCEECTT
T ss_pred CCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEee-eccCCceEccCcCCCceEcCC
Confidence 3777899999999999776654 2 2799999988741 11111 12334333 36789999
Q ss_pred CCEEE-EEEc-CC--eEEEEECCCCcEEEeccCCCCeeEEEEeCCCCEEEEEEC
Q 003236 780 FPSLL-VIGC-YE--TLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASH 829 (837)
Q Consensus 780 g~~L~-sgs~-dg--~I~IwDl~s~~~~~l~~h~~~V~sla~spdg~~LaSgs~ 829 (837)
|+.|+ ..+. +| .|++||+.+++...+......|..+.+ +|++.|+..+.
T Consensus 330 G~~l~~~~s~~~G~~~l~~~~~~~~~~~~lT~g~~~v~~~~~-~d~~~i~f~~~ 382 (740)
T 4a5s_A 330 GNSFYKIISNEEGYRHICYFQIDKKDCTFITKGTWEVIGIEA-LTSDYLYYISN 382 (740)
T ss_dssp SSEEEEEEECTTSCEEEEEEETTCSSCEESCCSSSCEEEEEE-ECSSEEEEEES
T ss_pred CCEEEEEEEcCCCceEEEEEECCCCceEecccCCEEEEEEEE-EeCCEEEEEEe
Confidence 99877 5554 33 799999998888777766667776653 44665554443
|
| >2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A | Back alignment and structure |
|---|
Probab=99.78 E-value=1e-17 Score=190.66 Aligned_cols=212 Identities=14% Similarity=0.152 Sum_probs=160.0
Q ss_pred CcEEEEeCCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCC---------ceeE-----Eeeccccc
Q 003236 577 KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPD---------YSLR-----TFTGHSTT 642 (837)
Q Consensus 577 g~I~VWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~~~---------~~~~-----~~~~h~~~ 642 (837)
+.|++|+.... .+...++.+++++++.+|++++.|+ |+||+..... ..+. ....+...
T Consensus 23 ~~vri~~~~~~-------~~~~~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (434)
T 2oit_A 23 KKVRIFDSPEE-------LPKERSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFP 94 (434)
T ss_dssp CEEECSCCCSS-------CCCSCCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSC
T ss_pred eeEEecCCccc-------cCCCCccEEEEecCCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCCc
Confidence 46888864311 2345689999999999999999888 8898754210 0011 11235677
Q ss_pred eEEEEEcCCCCeEEE---EEeCCCcEEEEECCCC--------eeeeEEe----cCCCeeEEEEecC-CCEEEEEEcCCeE
Q 003236 643 VMSLDFHPSKEDLLC---SCDNNSEIRYWSINNG--------SCAGVFK----CQSGATQMRFQPR-LGRILAAAIENYI 706 (837)
Q Consensus 643 V~sl~fspdg~~lla---sgs~Dg~I~vwDl~t~--------~~i~~~~----~~~~i~sl~~sp~-g~~llags~dg~I 706 (837)
|.+++|+|++..+++ +++.|+.|++||+.++ +.+..+. +...|.+++|+|+ +..|++++.|+.|
T Consensus 95 v~~l~~spdg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v 174 (434)
T 2oit_A 95 IHHLALSCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSI 174 (434)
T ss_dssp EEEEEECTTSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCE
T ss_pred ccEEEEcCCCCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeE
Confidence 999999999886665 7888999999998754 2222222 3567999999998 7889999999999
Q ss_pred EEEECCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecC-------CCceEEEEEeC
Q 003236 707 SILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCT-------GNKFHSCVFHP 778 (837)
Q Consensus 707 ~iwDl~s~~~~~~l~~h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~-------~~~I~sv~fsp 778 (837)
++||++++..+....+|...|++++|+|+|++|++++ |+.|++||++ + .....+..+ ...+.+++|++
T Consensus 175 ~iwD~~~~~~~~~~~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~-~---~~~~~~~~~~~~~~~~~~~v~~v~w~~ 250 (434)
T 2oit_A 175 AVLQVTETVKVCATLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-L---QEKKVIPCPPFYESDHPVRVLDVLWIG 250 (434)
T ss_dssp EEEEESSSEEEEEEECGGGCEEEEEECTTSSCEEEEETTSCEEEECTT-C---CEEEEECCCTTCCTTSCEEEEEEEEEE
T ss_pred EEEEcCCCcceeeccCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccC-C---cccccccCCcccCCCCceeEEEEEEec
Confidence 9999999987777778999999999999999999999 9999999998 3 233333322 23789999999
Q ss_pred CCCEEEEEE-cCC------eEEEEECCCC
Q 003236 779 TFPSLLVIG-CYE------TLELWNMTEN 800 (837)
Q Consensus 779 dg~~L~sgs-~dg------~I~IwDl~s~ 800 (837)
++.++++.+ .+| .+++|++...
T Consensus 251 ~~~~l~~~~~~dg~~~~~~~v~i~~l~~~ 279 (434)
T 2oit_A 251 TYVFAIVYAAADGTLETSPDVVMALLPKK 279 (434)
T ss_dssp TTEEEEEEEETTCCSSSCCEEEEEECCCT
T ss_pred CceEEEEEccCCCccCCCCceEEEEeccC
Confidence 887776544 332 4999999765
|
| >3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A | Back alignment and structure |
|---|
Probab=99.77 E-value=2.8e-17 Score=196.21 Aligned_cols=281 Identities=10% Similarity=0.051 Sum_probs=197.5
Q ss_pred EecCCCCCeEEEEEcCCCCEEEEE--ECCCcEEEEeCCCCeEEEEeccCCCCeE---------EEEEc--CCCCE-EEEE
Q 003236 550 LIPASTSKVESCHFSPDGKLLATG--GHDKKAVLWCTESFTVKSTLEEHTQWIT---------DVRFS--PSLSR-LATS 615 (837)
Q Consensus 550 ~l~~H~~~V~sl~fSpdg~~Lasg--s~Dg~I~VWd~~t~~~~~~l~~h~~~I~---------~l~fs--pdg~~-Latg 615 (837)
.+.+|...|.+++|++++-++++. +.++...||....+.....+..|...+. .+.|+ ||++. |+.+
T Consensus 18 ~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~la~~ 97 (662)
T 3azo_A 18 LVASRSGRPACVGAVGDEVWWVAPRPAEAGRATLVRRRADGAEESALPAPWNVRNRVFEYSGFPWAGVPRPAGGPLLVFT 97 (662)
T ss_dssp HHHHTCSCCEEEEEETTEEEEEEEETTTTTEEEEEEECTTSCEEESSCTTCCBCCCGGGTCCCCEEEECCSSSSCEEEEE
T ss_pred HHhhcCCccceeEEcCCeEEEEecCcccCCcEEEEEECCCCCcceeCCCCccccccccccCCccceeeeecCCCeEEEEE
Confidence 356788999999999887666666 5578899998655555666767766666 66666 99998 7766
Q ss_pred eC-CCeEEEEEcC--C-CCceeEEeec-----cccceEEEEEcCCCCeEEEEEeCC---------CcEEEEECCC-----
Q 003236 616 SA-DRTVRVWDTE--N-PDYSLRTFTG-----HSTTVMSLDFHPSKEDLLCSCDNN---------SEIRYWSINN----- 672 (837)
Q Consensus 616 s~-Dg~I~IWDl~--~-~~~~~~~~~~-----h~~~V~sl~fspdg~~llasgs~D---------g~I~vwDl~t----- 672 (837)
+. +..|++|++. . +. ...+.. |...+.+++|+|||+.++++.... ..|++||+.+
T Consensus 98 ~~~~~~l~~~~~~~~g~~~--~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 175 (662)
T 3azo_A 98 HFGDQRLYAFEPDAPGGAV--PRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAAD 175 (662)
T ss_dssp BTTTCCEEEECTTSTTCCC--CEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTC
T ss_pred ECCCCeEEEEcCCCCCCCC--CEeccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCcccc
Confidence 54 5667777765 2 33 344444 667889999999998776555321 5899999988
Q ss_pred -CeeeeEE-ecCCCeeEEEEecCCCEEEEEEcC--------CeEEEEECC-CC---eEEEEEcCCCCCEEEEEEcCCCCE
Q 003236 673 -GSCAGVF-KCQSGATQMRFQPRLGRILAAAIE--------NYISILDVE-TQ---VCRLKLQGHKNQVHSVCWNTSGEY 738 (837)
Q Consensus 673 -~~~i~~~-~~~~~i~sl~~sp~g~~llags~d--------g~I~iwDl~-s~---~~~~~l~~h~~~V~sl~~spdg~~ 738 (837)
++..... .....+..++|+|||++|+.++.+ ..|++||+. ++ .......+|...+..++|+|||++
T Consensus 176 ~~~~~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~spdg~l 255 (662)
T 3azo_A 176 RSAVRELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEEAIAQAEWAPDGSL 255 (662)
T ss_dssp GGGSEESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTBCEEEEEECTTSCE
T ss_pred CCceeEEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCceEcceEECCCCeE
Confidence 5554444 344567789999999999988865 379999999 56 444444556788999999999997
Q ss_pred EEEEe-CC--eEEEEEcCCCCCceeEEEeecCCCc--------eEEEEEeCCCCEEEEEEcCCeEEEE--ECCCCcEEEe
Q 003236 739 LASVS-DE--LVRVWSIGSGSKGECIHELSCTGNK--------FHSCVFHPTFPSLLVIGCYETLELW--NMTENKTLTL 805 (837)
Q Consensus 739 Lasgs-Dg--~I~IwDl~s~~~~~~i~~~~~~~~~--------I~sv~fspdg~~L~sgs~dg~I~Iw--Dl~s~~~~~l 805 (837)
++++. ++ .|.+||+.++ ........+... +..++|++++..++++.. +.++|| |+.+++...+
T Consensus 256 ~~~~~~~~~~~l~~~~~~~~---~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~d~~~~~~~~l 331 (662)
T 3azo_A 256 IVATDRTGWWNLHRVDPATG---AATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGK-GAAVLGILDPESGELVDA 331 (662)
T ss_dssp EEEECTTSSCEEEEECTTTC---CEEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBS-SSCEEEEEETTTTEEEEC
T ss_pred EEEECCCCCeEEEEEECCCC---ceeecccccccccCccccccCceEeEeCCCEEEEEEEc-CccEEEEEECCCCcEEEe
Confidence 77776 77 5666666554 222222222111 467899999998888888 877777 7777777677
Q ss_pred ccCCCCeeEE-EEeCCCCEEEEEECCCcEEEe
Q 003236 806 SAHDKLVSSL-AASTVNGMVASASHDKCVKIW 836 (837)
Q Consensus 806 ~~h~~~V~sl-a~spdg~~LaSgs~DG~I~IW 836 (837)
..|...+..+ +++.+.-++++++.+....||
T Consensus 332 ~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~i~ 363 (662)
T 3azo_A 332 AGPWTEWAATLTVSGTRAVGVAASPRTAYEVV 363 (662)
T ss_dssp CSSCCEEEEEEEEETTEEEEEEEETTEEEEEE
T ss_pred cCCCCeEEEEEecCCCEEEEEEcCCCCCCEEE
Confidence 7787788877 554433344455566555554
|
| >2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ... | Back alignment and structure |
|---|
Probab=99.76 E-value=1.8e-16 Score=175.86 Aligned_cols=262 Identities=10% Similarity=0.103 Sum_probs=193.0
Q ss_pred EecCCCCCeEEEEEcCCCCEEEEEEC----------CCcEEEEeCCCCeEEEEeccC------CCCeEEEEEcCCCCEEE
Q 003236 550 LIPASTSKVESCHFSPDGKLLATGGH----------DKKAVLWCTESFTVKSTLEEH------TQWITDVRFSPSLSRLA 613 (837)
Q Consensus 550 ~l~~H~~~V~sl~fSpdg~~Lasgs~----------Dg~I~VWd~~t~~~~~~l~~h------~~~I~~l~fspdg~~La 613 (837)
.+..+..+ .++|+|||++|+++.. ++.|.+||..+++.+..+... ......++|+|||++|+
T Consensus 46 ~i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~~~g~~p~~i~~spdg~~l~ 123 (361)
T 2oiz_A 46 MVPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKRVQGLNYDGLFRQTTDGKFIV 123 (361)
T ss_dssp EEECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTBCCBCCCGGGEEECTTSSEEE
T ss_pred EecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCccccccCCCcceEEECCCCCEEE
Confidence 44455444 8999999999998863 678999999999888877532 34577899999999999
Q ss_pred EEeC--CCeEEEEEcCCCCceeEE-eeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCC-CeeeeEE------ecCC
Q 003236 614 TSSA--DRTVRVWDTENPDYSLRT-FTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN-GSCAGVF------KCQS 683 (837)
Q Consensus 614 tgs~--Dg~I~IWDl~~~~~~~~~-~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t-~~~i~~~------~~~~ 683 (837)
++.. +++|.+||+.+.+. +.. +. +. ....+.+.|++...+++.+.||.+.+|++.. ++..... ....
T Consensus 124 v~n~~~~~~v~v~d~~~~~~-~~~~i~-~~-~~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~~~~~~~~~ 200 (361)
T 2oiz_A 124 LQNASPATSIGIVDVAKGDY-VEDVTA-AA-GCWSVIPQPNRPRSFMTICGDGGLLTINLGEDGKVASQSRSKQMFSVKD 200 (361)
T ss_dssp EEEESSSEEEEEEETTTTEE-EEEEGG-GT-TEEEEEECTTSSSEEEEEETTSSEEEEEECTTSSEEEEEECCCCSCTTT
T ss_pred EECCCCCCeEEEEECCCCcE-EEEEec-CC-CcceeEEcCCCCeeEEEECCCCcEEEEEECCCCcEeeeccccceEcCCC
Confidence 9874 58999999998653 444 33 22 2234667888766777888899999999865 5544222 1222
Q ss_pred CeeEEEEecCCCEEEEEEcCCeEEEEECCCCe--EEEEEcC------CC----CCEEEEEEcCCCCEEEEEe--------
Q 003236 684 GATQMRFQPRLGRILAAAIENYISILDVETQV--CRLKLQG------HK----NQVHSVCWNTSGEYLASVS-------- 743 (837)
Q Consensus 684 ~i~sl~~sp~g~~llags~dg~I~iwDl~s~~--~~~~l~~------h~----~~V~sl~~spdg~~Lasgs-------- 743 (837)
....+.+++++..++..+.++.|.++|+.... .+..+.. +. .....++|+|++..++++.
T Consensus 201 ~~~~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~ 280 (361)
T 2oiz_A 201 DPIFIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGT 280 (361)
T ss_dssp SCBCSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEETTTTEEEEEEESSCCTTC
T ss_pred CceEEEecccCCEEEEEeCCCeEEEEEecCCCceecccccccCccccccccccCCeeEEEEecCCCeEEEEEccCCCccc
Confidence 22334456777788888889999999987543 2222211 11 1111378999988777653
Q ss_pred ----CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCC--cEEEe-ccCCCCeeEEE
Q 003236 744 ----DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTEN--KTLTL-SAHDKLVSSLA 816 (837)
Q Consensus 744 ----Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fspdg~~L~sgs~dg~I~IwDl~s~--~~~~l-~~h~~~V~sla 816 (837)
.+.|.+||+.+. +.+..+..+. ...++|+|+|++|++++. +.|.+||..++ +.+.. ..+......++
T Consensus 281 ~~~~~~~v~viD~~t~---~~v~~i~~~~--p~~ia~spdg~~l~v~n~-~~v~v~D~~t~~l~~~~~i~~~G~~P~~~~ 354 (361)
T 2oiz_A 281 HKFPAAEIWVMDTKTK---QRVARIPGRD--ALSMTIDQQRNLMLTLDG-GNVNVYDISQPEPKLLRTIEGAAEASLQVQ 354 (361)
T ss_dssp TTCCCSEEEEEETTTT---EEEEEEECTT--CCEEEEETTTTEEEEECS-SCEEEEECSSSSCEEEEEETTSCSSEEEEE
T ss_pred ccCCCceEEEEECCCC---cEEEEEecCC--eeEEEECCCCCEEEEeCC-CeEEEEECCCCcceeeEEeccCCCCcEEEE
Confidence 237999999987 7788877766 999999999999998886 99999999999 88854 57888899999
Q ss_pred EeCCCC
Q 003236 817 ASTVNG 822 (837)
Q Consensus 817 ~spdg~ 822 (837)
++|+|+
T Consensus 355 ~~p~G~ 360 (361)
T 2oiz_A 355 FHPVGG 360 (361)
T ss_dssp ECCCSC
T ss_pred ecCCCC
Confidence 999985
|
| >4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ... | Back alignment and structure |
|---|
Probab=99.76 E-value=1.1e-16 Score=194.48 Aligned_cols=295 Identities=14% Similarity=0.089 Sum_probs=197.5
Q ss_pred CeEEcccCCCceEEeecCCCCCCCCccccccccCCCeeeeEEEEecCCCCC-----eEEEEEcCCCCEEEEEECC-----
Q 003236 507 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSK-----VESCHFSPDGKLLATGGHD----- 576 (837)
Q Consensus 507 ~~v~~Gs~D~~v~~w~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~H~~~-----V~sl~fSpdg~~Lasgs~D----- 576 (837)
.+++++ |++|.+|....+. +...+.+|... ...++|||||++|++++.+
T Consensus 29 ~~~~~~--~~~i~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r 87 (740)
T 4a5s_A 29 EYLYKQ--ENNILVFNAEYGN-------------------SSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWR 87 (740)
T ss_dssp EEEEEE--TTEEEEEETTTCC-------------------EEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSS
T ss_pred cEEEEc--CCcEEEEECCCCc-------------------eEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEE
Confidence 566665 7888888654331 12334555432 3458899999999998876
Q ss_pred ----CcEEEEeCCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeEEeeccccce---------
Q 003236 577 ----KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTV--------- 643 (837)
Q Consensus 577 ----g~I~VWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V--------- 643 (837)
+.+.+||+.+++.. .+..|...+..++|+|||+.||.++ |+.|++||+.++.....+..++...+
T Consensus 88 ~~~~~~~~~~d~~~~~~~-~l~~~~~~~~~~~~SPdG~~la~~~-~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~ 165 (740)
T 4a5s_A 88 HSYTASYDIYDLNKRQLI-TEERIPNNTQWVTWSPVGHKLAYVW-NNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVY 165 (740)
T ss_dssp SCEEEEEEEEETTTTEEC-CSSCCCTTEEEEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHH
T ss_pred EccceEEEEEECCCCcEE-EcccCCCcceeeEECCCCCEEEEEE-CCeEEEEECCCCceEEEcCCCCccceecCcccccc
Confidence 56679999998765 4667888999999999999999884 78999999988764333333433323
Q ss_pred --------EEEEEcCCCCeEEEEEeCCC-----------------------------------cEEEEECCC---Ce---
Q 003236 644 --------MSLDFHPSKEDLLCSCDNNS-----------------------------------EIRYWSINN---GS--- 674 (837)
Q Consensus 644 --------~sl~fspdg~~llasgs~Dg-----------------------------------~I~vwDl~t---~~--- 674 (837)
..+.|+|||+.+++....++ .|++||+.+ ++
T Consensus 166 ~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~ 245 (740)
T 4a5s_A 166 EEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNAT 245 (740)
T ss_dssp HHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCC
T ss_pred cchhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcce
Confidence 35899999997776543222 588899988 73
Q ss_pred eeeEEe------cCCCeeEEEEecCCCEEEEEEcC----CeEEEEECCCCe----EEE--EE--cCCCCCEE-----EEE
Q 003236 675 CAGVFK------CQSGATQMRFQPRLGRILAAAIE----NYISILDVETQV----CRL--KL--QGHKNQVH-----SVC 731 (837)
Q Consensus 675 ~i~~~~------~~~~i~sl~~sp~g~~llags~d----g~I~iwDl~s~~----~~~--~l--~~h~~~V~-----sl~ 731 (837)
...... ....+..+.|+|+++.++..... ..|.+||+.+++ +.. .+ ..|...|. .+.
T Consensus 246 ~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~~~~v~~~~~~~p~ 325 (740)
T 4a5s_A 246 SIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPSEPH 325 (740)
T ss_dssp EEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSSSSSCCCCE
T ss_pred EEEecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEeeeccCCceEccCcCCCce
Confidence 332221 22347889999999866655442 379999998876 221 11 34665554 789
Q ss_pred EcCCCCEEE-EEe--CC--eEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcC-------CeEEEEECCC
Q 003236 732 WNTSGEYLA-SVS--DE--LVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCY-------ETLELWNMTE 799 (837)
Q Consensus 732 ~spdg~~La-sgs--Dg--~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fspdg~~L~sgs~d-------g~I~IwDl~s 799 (837)
|+|||+.|+ ..+ +| .|++||+.++. .. .+......+..+.. ++++.|+..+.. ..|+..++.+
T Consensus 326 fspDG~~l~~~~s~~~G~~~l~~~~~~~~~---~~-~lT~g~~~v~~~~~-~d~~~i~f~~~~~~~~~~~~~ly~v~~~g 400 (740)
T 4a5s_A 326 FTLDGNSFYKIISNEEGYRHICYFQIDKKD---CT-FITKGTWEVIGIEA-LTSDYLYYISNEYKGMPGGRNLYKIQLID 400 (740)
T ss_dssp ECTTSSEEEEEEECTTSCEEEEEEETTCSS---CE-ESCCSSSCEEEEEE-ECSSEEEEEESCGGGCTTCBEEEEEETTE
T ss_pred EcCCCCEEEEEEEcCCCceEEEEEECCCCc---eE-ecccCCEEEEEEEE-EeCCEEEEEEecCCCCCceeEEEEEECCC
Confidence 999999877 665 44 78889987652 22 33333445555442 447777766654 2566666666
Q ss_pred CcEE-Eecc----CCCCeeEEEEeCCCCEEEEEEC
Q 003236 800 NKTL-TLSA----HDKLVSSLAASTVNGMVASASH 829 (837)
Q Consensus 800 ~~~~-~l~~----h~~~V~sla~spdg~~LaSgs~ 829 (837)
+... .+.. ....+..+.|+|++++++....
T Consensus 401 ~~~~~~lt~~~~~~~~~~~~~~~S~dg~~~~~~~s 435 (740)
T 4a5s_A 401 YTKVTCLSCELNPERCQYYSVSFSKEAKYYQLRCS 435 (740)
T ss_dssp EEEEEESSTTTSTTTBCBEEEEECTTSSEEEEEEC
T ss_pred CCcceeeccccCCCCCceEEEEECCCCCEEEEEeC
Confidence 5543 3321 2467889999999997765543
|
| >2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ... | Back alignment and structure |
|---|
Probab=99.76 E-value=1.6e-16 Score=176.32 Aligned_cols=263 Identities=8% Similarity=0.051 Sum_probs=189.5
Q ss_pred CCCEEEEEE------CCCcEEEEeCCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeC----------CCeEEEEEcCCC
Q 003236 566 DGKLLATGG------HDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA----------DRTVRVWDTENP 629 (837)
Q Consensus 566 dg~~Lasgs------~Dg~I~VWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~----------Dg~I~IWDl~~~ 629 (837)
+++++++.. .|+.|++||..+++.+..+..+..+ .++|+||+++|++++. ++.|.+||+.+.
T Consensus 14 ~~~~~yv~~~~~~~~~d~~v~v~D~~t~~~~~~i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~ 91 (361)
T 2oiz_A 14 QENRIYVMDSVFMHLTESRVHVYDYTNGKFLGMVPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKL 91 (361)
T ss_dssp GGGEEEEEECCGGGGGGCEEEEEETTTCCEEEEEECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTC
T ss_pred CCCEEEEECCCCCccccCeEEEEECCCCeEEEEecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCC
Confidence 556665543 3779999999999999888776555 8999999999999873 678999999876
Q ss_pred CceeEEeec------cccceEEEEEcCCCCeEEEEEeC-CCcEEEEECCCCeeeeE-EecCCCeeEEEEecCC-CEEEEE
Q 003236 630 DYSLRTFTG------HSTTVMSLDFHPSKEDLLCSCDN-NSEIRYWSINNGSCAGV-FKCQSGATQMRFQPRL-GRILAA 700 (837)
Q Consensus 630 ~~~~~~~~~------h~~~V~sl~fspdg~~llasgs~-Dg~I~vwDl~t~~~i~~-~~~~~~i~sl~~sp~g-~~llag 700 (837)
+. +..+.. +......++|+|++++++++... ++.|.+||+.+++.+.. +... ....+.+.|++ ..+++.
T Consensus 92 ~~-~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~~-~~~~v~~~p~~~~~~~~~ 169 (361)
T 2oiz_A 92 TF-EKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVEDVTAAA-GCWSVIPQPNRPRSFMTI 169 (361)
T ss_dssp CE-EEEEEECTTBCCBCCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEEEGGGT-TEEEEEECTTSSSEEEEE
T ss_pred cE-EEEEEcCccccccCCCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEEEecCC-CcceeEEcCCCCeeEEEE
Confidence 54 444432 23457789999999977766554 68999999999988877 6543 33335677765 577888
Q ss_pred EcCCeEEEEECCC-CeEEEEE------cCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCC----
Q 003236 701 AIENYISILDVET-QVCRLKL------QGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTG---- 768 (837)
Q Consensus 701 s~dg~I~iwDl~s-~~~~~~l------~~h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~---- 768 (837)
+.||.+.+|++.. ++..... ..+..++ .+.+++++..++..+ ++.|.++|+..... ..+..+....
T Consensus 170 ~~dg~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~-~~~~~~~~~~~~~~ 247 (361)
T 2oiz_A 170 CGDGGLLTINLGEDGKVASQSRSKQMFSVKDDPI-FIAPALDKDKAHFVSYYGNVYSADFSGDEV-KVDGPWSLLNDEDK 247 (361)
T ss_dssp ETTSSEEEEEECTTSSEEEEEECCCCSCTTTSCB-CSCCEECSSEEEEEBTTSEEEEEECSSSSC-EEEEEEESCCHHHH
T ss_pred CCCCcEEEEEECCCCcEeeeccccceEcCCCCce-EEEecccCCEEEEEeCCCeEEEEEecCCCc-eecccccccCcccc
Confidence 8999999999865 5444221 1122222 334467777777667 88999999976532 2222221100
Q ss_pred ------CceEEEEEeCCCCEEEEEEc-----------CCeEEEEECCCCcEE-EeccCCCCeeEEEEeCCCCEEEEEECC
Q 003236 769 ------NKFHSCVFHPTFPSLLVIGC-----------YETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHD 830 (837)
Q Consensus 769 ------~~I~sv~fspdg~~L~sgs~-----------dg~I~IwDl~s~~~~-~l~~h~~~V~sla~spdg~~LaSgs~D 830 (837)
.....++|+|++..++++.. .+.|.+||+.+++.+ ++..+. +.+|+|+|||++|++++.
T Consensus 248 ~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~~--p~~ia~spdg~~l~v~n~- 324 (361)
T 2oiz_A 248 AKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPGRD--ALSMTIDQQRNLMLTLDG- 324 (361)
T ss_dssp HTTCEECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEECTT--CCEEEEETTTTEEEEECS-
T ss_pred ccccccCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEecCC--eeEEEECCCCCEEEEeCC-
Confidence 11113689999998888764 348999999999988 455555 999999999999998887
Q ss_pred CcEEEeC
Q 003236 831 KCVKIWK 837 (837)
Q Consensus 831 G~I~IWd 837 (837)
+.|.|||
T Consensus 325 ~~v~v~D 331 (361)
T 2oiz_A 325 GNVNVYD 331 (361)
T ss_dssp SCEEEEE
T ss_pred CeEEEEE
Confidence 9999997
|
| >2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.75 E-value=3.6e-16 Score=170.40 Aligned_cols=252 Identities=11% Similarity=0.101 Sum_probs=178.6
Q ss_pred CeEEEEEcCCCCEEEEEE---------CCCcEEEEeCCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCC---C--eEE
Q 003236 557 KVESCHFSPDGKLLATGG---------HDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSAD---R--TVR 622 (837)
Q Consensus 557 ~V~sl~fSpdg~~Lasgs---------~Dg~I~VWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~D---g--~I~ 622 (837)
.|..+++ ||++||... .++.|++||+.+++... + ..+.+++|+|||++|+.++.+ + .|+
T Consensus 16 ~~~~~~~--dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~-l----~~~~~~~~SpDg~~la~~~~~~~~~~~~l~ 88 (347)
T 2gop_A 16 YLSDPRT--KGELVAYVLTKANLKDNKYENTIVIENLKNNARRF-I----ENATMPRISPDGKKIAFMRANEEKKVSEIW 88 (347)
T ss_dssp EEEEEEE--ETTEEEEEEEEEETTTTEEEEEEEEEETTTCCEEE-E----ESCEEEEECTTSSEEEEEEEETTTTEEEEE
T ss_pred EcccceE--CCcEEEEEEeecCcccCCccceEEEEeCCCCceEE-c----ccCCCeEECCCCCEEEEEEeccCCCcceEE
Confidence 4667777 888887652 25679999999876543 3 568899999999999988754 3 477
Q ss_pred EEEcCCCCceeEEeeccccceEEEEEcCCCCeEEEEEeC--------------------------CCcEEEEECCCCeee
Q 003236 623 VWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDN--------------------------NSEIRYWSINNGSCA 676 (837)
Q Consensus 623 IWDl~~~~~~~~~~~~h~~~V~sl~fspdg~~llasgs~--------------------------Dg~I~vwDl~t~~~i 676 (837)
+||+.+++. ..+..+.. +.+++|+|++..+++++.. ...|++||+.+++.+
T Consensus 89 ~~~~~~g~~--~~l~~~~~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~ 165 (347)
T 2gop_A 89 VADLETLSS--KKILEAKN-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVI 165 (347)
T ss_dssp EEETTTTEE--EEEEEESE-EEEEEECTTSSEEEEEEECCCC---------CCCC---------CEEEEEEEETTTTEEE
T ss_pred EEECCCCce--EEEEcCCC-ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCeEE
Confidence 888876542 33333334 9999999999877766532 257999999998874
Q ss_pred eEEecCCCeeEEEEecCCCEEEEEEcCC---------eEEEEECCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEe-C--
Q 003236 677 GVFKCQSGATQMRFQPRLGRILAAAIEN---------YISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-D-- 744 (837)
Q Consensus 677 ~~~~~~~~i~sl~~sp~g~~llags~dg---------~I~iwDl~s~~~~~~l~~h~~~V~sl~~spdg~~Lasgs-D-- 744 (837)
..+... .+..+.|+|++ .++++..+. .|.++| +++.. .+..+ ..+..+ +|||++|+.++ +
T Consensus 166 ~~l~~~-~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d--~~~~~-~l~~~-~~~~~~--spdg~~l~~~~~~~~ 237 (347)
T 2gop_A 166 EEFEKP-RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWE--DGKEE-KMFEK-VSFYAV--DSDGERILLYGKPEK 237 (347)
T ss_dssp EEEEEE-TTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEE--TTEEE-EEEEE-ESEEEE--EECSSCEEEEECCSS
T ss_pred eeecCC-CcccccCCCCe-EEEEEecccccccccccccEEEeC--CCceE-EeccC-cceeeE--CCCCCEEEEEEcccc
Confidence 444434 88899999998 666665432 455556 55443 33334 455544 99999887766 3
Q ss_pred ------CeEEEEEcCCCCCceeEEEeecCCCceEE-EEEeCCCCEEEEEEcCCeEEEEECCCCcEEEeccCCCCeeEEEE
Q 003236 745 ------ELVRVWSIGSGSKGECIHELSCTGNKFHS-CVFHPTFPSLLVIGCYETLELWNMTENKTLTLSAHDKLVSSLAA 817 (837)
Q Consensus 745 ------g~I~IwDl~s~~~~~~i~~~~~~~~~I~s-v~fspdg~~L~sgs~dg~I~IwDl~s~~~~~l~~h~~~V~sla~ 817 (837)
..|.+|| ++ ........+...+.. +.|+ ++ .+++++.++.++|| +.+++...+..+...|.+++|
T Consensus 238 ~~~~~~~~l~~~d--~~---~~~~l~~~~~~~~~~~~~~s-dg-~~~~~~~~~~~~l~-~~~g~~~~~~~~~~~v~~~~~ 309 (347)
T 2gop_A 238 KYMSEHNKLYIYD--GK---EVMGILDEVDRGVGQAKIKD-GK-VYFTLFEEGSVNLY-IWDGEIKPIAKGRHWIMGFDV 309 (347)
T ss_dssp SCCCSSCEEEEEC--SS---CEEESSTTCCSEEEEEEEET-TE-EEEEEEETTEEEEE-EESSSEEEEECSSSEEEEEEE
T ss_pred CCccccceEEEEC--CC---ceEeccccCCcccCCccEEc-Cc-EEEEEecCCcEEEE-EcCCceEEEecCCCeEEeeee
Confidence 2577777 33 333333445567776 8999 88 88888889999999 877777666677888999999
Q ss_pred eCCCCEEEEEECCCcE-EEe
Q 003236 818 STVNGMVASASHDKCV-KIW 836 (837)
Q Consensus 818 spdg~~LaSgs~DG~I-~IW 836 (837)
++ .++++++.++.. .||
T Consensus 310 s~--~~~~~~~~~~~~~~l~ 327 (347)
T 2gop_A 310 DE--IVVYLKETATRLRELF 327 (347)
T ss_dssp SS--SEEEEEECSSSCCEEE
T ss_pred eC--cEEEEEcCCCChHHhe
Confidence 99 677777777654 555
|
| >3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=7.2e-16 Score=168.29 Aligned_cols=240 Identities=15% Similarity=0.114 Sum_probs=181.9
Q ss_pred CCCeEEEEEcCCCCEEEEEECC------------------------CcEEEEeCCCCeEEEEec-cCCCCeEEEEEcCCC
Q 003236 555 TSKVESCHFSPDGKLLATGGHD------------------------KKAVLWCTESFTVKSTLE-EHTQWITDVRFSPSL 609 (837)
Q Consensus 555 ~~~V~sl~fSpdg~~Lasgs~D------------------------g~I~VWd~~t~~~~~~l~-~h~~~I~~l~fspdg 609 (837)
-+.|.+|+++++|+++++...+ ++|.+||..+++.+..+. .+-..+..|++++++
T Consensus 23 l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~~g 102 (329)
T 3fvz_A 23 PGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSIDTDG 102 (329)
T ss_dssp CSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEEECTTS
T ss_pred cCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEEECCCC
Confidence 3569999999999999888777 479999999888887664 445678999999999
Q ss_pred CEEEEEeCCCeEEEEEcCCCCceeEEe---------eccccceEEEEEcCCCCeEEEEEe-CCCcEEEEECCCCeeeeEE
Q 003236 610 SRLATSSADRTVRVWDTENPDYSLRTF---------TGHSTTVMSLDFHPSKEDLLCSCD-NNSEIRYWSINNGSCAGVF 679 (837)
Q Consensus 610 ~~Latgs~Dg~I~IWDl~~~~~~~~~~---------~~h~~~V~sl~fspdg~~llasgs-~Dg~I~vwDl~t~~~i~~~ 679 (837)
+++++...++.|++||.......+..+ .++-....+++++|++..++++.+ .++.|++|| .+++.+..+
T Consensus 103 ~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~-~~g~~~~~~ 181 (329)
T 3fvz_A 103 NYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFS-PSGKFVTQW 181 (329)
T ss_dssp CEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEEC-TTSCEEEEE
T ss_pred CEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEc-CCCCEEEEe
Confidence 988888889999999987543234444 234457899999994455666775 689999999 557776666
Q ss_pred ecC-----------CCeeEEEEecCCCEEEEEE-cCCeEEEEECCCCeEEEEEc--CCCCCEEEEEEcCCCCEEEEE---
Q 003236 680 KCQ-----------SGATQMRFQPRLGRILAAA-IENYISILDVETQVCRLKLQ--GHKNQVHSVCWNTSGEYLASV--- 742 (837)
Q Consensus 680 ~~~-----------~~i~sl~~sp~g~~llags-~dg~I~iwDl~s~~~~~~l~--~h~~~V~sl~~spdg~~Lasg--- 742 (837)
... .....++++|+++.++++. .++.|.+||..+++.+..+. .+...+.+++|+| +..+++.
T Consensus 182 ~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~~~~~~~~~~~~p-g~~~~~~g~~ 260 (329)
T 3fvz_A 182 GEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHASFGRNVFAISYIP-GFLFAVNGKP 260 (329)
T ss_dssp CEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCTTTTTCEEEEEEET-TEEEEEECCC
T ss_pred ccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEeccccCCCcceeeecC-CEEEEeCCCE
Confidence 431 2378999999955555554 57899999999888888874 4567889999999 3333332
Q ss_pred ----e-CCeEEEEEcCCCCCceeEEEe---ecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCC
Q 003236 743 ----S-DELVRVWSIGSGSKGECIHEL---SCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTE 799 (837)
Q Consensus 743 ----s-Dg~I~IwDl~s~~~~~~i~~~---~~~~~~I~sv~fspdg~~L~sgs~dg~I~IwDl~s 799 (837)
. +..|++||+.++ ..+..+ ..+......++++|+|..+++...++.|++|++..
T Consensus 261 ~v~~~~~~~v~~~~~~~g---~~~~~~~~~~~~~~~p~~ia~~~dG~lyvad~~~~~I~~~~~~~ 322 (329)
T 3fvz_A 261 YFGDQEPVQGFVMNFSSG---EIIDVFKPVRKHFDMPHDIVASEDGTVYIGDAHTNTVWKFTLTE 322 (329)
T ss_dssp CTTCSCCCCEEEEETTTC---CEEEEECCSSSCCSSEEEEEECTTSEEEEEESSSCCEEEEEEEE
T ss_pred EeccCCCcEEEEEEcCCC---eEEEEEcCCCCccCCeeEEEECCCCCEEEEECCCCEEEEEeCCc
Confidence 2 348999999887 555555 35566789999999996666666678999999754
|
| >2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A | Back alignment and structure |
|---|
Probab=99.73 E-value=7.3e-16 Score=167.31 Aligned_cols=267 Identities=8% Similarity=0.044 Sum_probs=191.3
Q ss_pred CCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeEE
Q 003236 556 SKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRT 635 (837)
Q Consensus 556 ~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~~~~~~~~ 635 (837)
..|.+++|++++..++..+.++.+++| .++....+..+...+.+++|++++++++++..++.|.+||..++.. ...
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~-~~~ 81 (333)
T 2dg1_A 6 QDLPTLFYSGKSNSAVPIISESELQTI---TAEPWLEISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEI-KRP 81 (333)
T ss_dssp CCCCBCCSCGGGGCSSCCCCGGGSCEE---ECEEEEEEESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCE-EEE
T ss_pred cccceeeecCCccceeEEeecccCccc---ccceeEEEeccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcE-EEE
Confidence 347888999988887777888999999 3456667777778889999999999888888899999999987653 333
Q ss_pred eeccccceEEEEEcCCCCeEEEEEeCC----CcEEEEECCCCeeeeEEe---cCCCeeEEEEecCCCEEEEEEc------
Q 003236 636 FTGHSTTVMSLDFHPSKEDLLCSCDNN----SEIRYWSINNGSCAGVFK---CQSGATQMRFQPRLGRILAAAI------ 702 (837)
Q Consensus 636 ~~~h~~~V~sl~fspdg~~llasgs~D----g~I~vwDl~t~~~i~~~~---~~~~i~sl~~sp~g~~llags~------ 702 (837)
...+...+.+++|++++. +++++..+ +.|.+||..++.....+. ....+..++++|++..+++...
T Consensus 82 ~~~~~~~~~~i~~~~dg~-l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~ 160 (333)
T 2dg1_A 82 FVSHKANPAAIKIHKDGR-LFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNP 160 (333)
T ss_dssp EECSSSSEEEEEECTTSC-EEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBC
T ss_pred eeCCCCCcceEEECCCCc-EEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccCCcccceEECCCCCEEEEeccccccCC
Confidence 335667899999999976 55555545 689999998877653332 2346889999999876665543
Q ss_pred CCeEEEEECCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEe--CCeEEEEEcCC-CCCceeE-----EEeecCCCceEEE
Q 003236 703 ENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS--DELVRVWSIGS-GSKGECI-----HELSCTGNKFHSC 774 (837)
Q Consensus 703 dg~I~iwDl~s~~~~~~l~~h~~~V~sl~~spdg~~Lasgs--Dg~I~IwDl~s-~~~~~~i-----~~~~~~~~~I~sv 774 (837)
.+.|..||..+++..... .+...+.+++|+|++++|+++. ++.|.+||+.+ +.....+ ..+.. ...+..+
T Consensus 161 ~~~l~~~~~~~~~~~~~~-~~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~-~~~~~~i 238 (333)
T 2dg1_A 161 LGGVYYVSPDFRTVTPII-QNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTG-HEGPDSC 238 (333)
T ss_dssp CEEEEEECTTSCCEEEEE-EEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCS-SSEEEEE
T ss_pred CceEEEEeCCCCEEEEee-cCCCcccceEECCCCCEEEEEeCCCCeEEEEEecCCCcCcccccceEEEecCC-CCCCCce
Confidence 356777777665443322 2334688999999998665554 78999999964 2211111 11111 1467889
Q ss_pred EEeCCCCEEEEEEcCCeEEEEECCCCcEE-EeccCCC------CeeEEEEeCCCCEEEEEECC
Q 003236 775 VFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDK------LVSSLAASTVNGMVASASHD 830 (837)
Q Consensus 775 ~fspdg~~L~sgs~dg~I~IwDl~s~~~~-~l~~h~~------~V~sla~spdg~~LaSgs~D 830 (837)
+++++|..+++...++.|.+||.. ++.+ .+..+.. .+.+++|++|++.|+.++.+
T Consensus 239 ~~d~~G~l~v~~~~~~~v~~~d~~-g~~~~~~~~~~~~~g~~~~~~~~~~~~dg~~L~v~~~~ 300 (333)
T 2dg1_A 239 CIDSDDNLYVAMYGQGRVLVFNKR-GYPIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICSND 300 (333)
T ss_dssp EEBTTCCEEEEEETTTEEEEECTT-SCEEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEEEC
T ss_pred EECCCCCEEEEEcCCCEEEEECCC-CCEEEEEEcCCCccccccCcceEEECCCCCEEEEEeCc
Confidence 999999877776677899999985 4444 4433332 68999999998777666555
|
| >1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=1.4e-14 Score=169.89 Aligned_cols=308 Identities=10% Similarity=0.020 Sum_probs=220.9
Q ss_pred CeEEcccCCCceEEeecCCCCCCCCccccccccCCCeeeeEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCC-
Q 003236 507 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTE- 585 (837)
Q Consensus 507 ~~v~~Gs~D~~v~~w~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~H~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~- 585 (837)
.++++...++.|.+++.... ..+..+... ..+.++.|+|||++|++++.|+.|.+||+.
T Consensus 168 ~~~V~~~~~~~V~viD~~t~-------------------~v~~~i~~g-~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~ 227 (567)
T 1qks_A 168 LFSVTLRDAGQIALIDGSTY-------------------EIKTVLDTG-YAVHISRLSASGRYLFVIGRDGKVNMIDLWM 227 (567)
T ss_dssp EEEEEETTTTEEEEEETTTC-------------------CEEEEEECS-SCEEEEEECTTSCEEEEEETTSEEEEEETTS
T ss_pred eEEEEeCCCCeEEEEECCCC-------------------eEEEEEeCC-CCccceEECCCCCEEEEEcCCCeEEEEECCC
Confidence 45566666777777754322 122233322 246789999999999999999999999995
Q ss_pred -CCeEEEEeccCCCCeEEEEEc----CCCCEEEEEeC-CCeEEEEEcCCCCceeEEeec----------cc-cceEEEEE
Q 003236 586 -SFTVKSTLEEHTQWITDVRFS----PSLSRLATSSA-DRTVRVWDTENPDYSLRTFTG----------HS-TTVMSLDF 648 (837)
Q Consensus 586 -t~~~~~~l~~h~~~I~~l~fs----pdg~~Latgs~-Dg~I~IWDl~~~~~~~~~~~~----------h~-~~V~sl~f 648 (837)
+++.+..+.... ....++|+ |||++++++++ ++.|.|+|..+.+. +..+.. |. ..+..+.+
T Consensus 228 ~t~~~v~~i~~G~-~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~-~~~i~~~~~~~~~~~~~p~~rva~i~~ 305 (567)
T 1qks_A 228 KEPTTVAEIKIGS-EARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEP-KKIQSTRGMTYDEQEYHPEPRVAAILA 305 (567)
T ss_dssp SSCCEEEEEECCS-EEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCE-EEEEECCEECTTTCCEESCCCEEEEEE
T ss_pred CCCcEeEEEecCC-CCceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcE-EEEEeccccccccccccCCCceEEEEE
Confidence 888888886543 46799999 69999888776 58999999888664 433321 21 26788999
Q ss_pred cCCCCeEEEEEeCCCcEEEEECCCCeee--eEEecCCCeeEEEEecCCCEEEEEEc-CCeEEEEECCCCeEEEEEcC---
Q 003236 649 HPSKEDLLCSCDNNSEIRYWSINNGSCA--GVFKCQSGATQMRFQPRLGRILAAAI-ENYISILDVETQVCRLKLQG--- 722 (837)
Q Consensus 649 spdg~~llasgs~Dg~I~vwDl~t~~~i--~~~~~~~~i~sl~~sp~g~~llags~-dg~I~iwDl~s~~~~~~l~~--- 722 (837)
++++..+++....+|.|.++|....+.. ..+........+.|+|+++++++++. ++.|.++|+.+++.+..+..
T Consensus 306 s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~~i~vgg~ 385 (567)
T 1qks_A 306 SHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQ 385 (567)
T ss_dssp CSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSS
T ss_pred cCCCCEEEEEecCCCeEEEEecCCCccceeeeeeccccccCceECCCCCEEEEEeCCCCeEEEEECCCCcEEEEEeccCc
Confidence 9988888888888899999999876433 33334456778999999999988775 68999999999988776653
Q ss_pred --CCCCEEEEEEcCCC-CEEEEEe--CCeEEEEEcCCCCC----ceeEEEeecCCCceEEEEEeCCCCEEEEEEc-----
Q 003236 723 --HKNQVHSVCWNTSG-EYLASVS--DELVRVWSIGSGSK----GECIHELSCTGNKFHSCVFHPTFPSLLVIGC----- 788 (837)
Q Consensus 723 --h~~~V~sl~~spdg-~~Lasgs--Dg~I~IwDl~s~~~----~~~i~~~~~~~~~I~sv~fspdg~~L~sgs~----- 788 (837)
|.+....+ ++|++ .+++++. ++.|.|+|..+... .+.+.++...+..-..+.++|+++++++...
T Consensus 386 ~Phpg~g~~~-~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~~~g~g~~~i~~~p~~~~l~v~~~~~~~~ 464 (567)
T 1qks_A 386 TPHPGRGANF-VHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLNPEA 464 (567)
T ss_dssp SBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCSEEEEECTTCSSH
T ss_pred CCCCccceee-ECCCCCcEEEeCCCCCCeEEEecCCCCCCccccCEEEEEEecCCCCCEEEEeCCCCCeEEEecCCCCCc
Confidence 33222222 57874 4455554 68999999987321 3567777665444455778999999998773
Q ss_pred --CCeEEEEECCCC-----c-E-EEec--------cCCCCeeEEEEeCCCCEEEEEEC-----CCcEEEeC
Q 003236 789 --YETLELWNMTEN-----K-T-LTLS--------AHDKLVSSLAASTVNGMVASASH-----DKCVKIWK 837 (837)
Q Consensus 789 --dg~I~IwDl~s~-----~-~-~~l~--------~h~~~V~sla~spdg~~LaSgs~-----DG~I~IWd 837 (837)
.+.|.+||+.+. . . ..+. .....+..+.|+++|+++..+.. ++.|.|+|
T Consensus 465 ~~~~~v~v~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~s~~~~~~~~~~i~v~D 535 (567)
T 1qks_A 465 EISGSVAVFDIKAMTGDGSDPEFKTLPIAEWAGITEGQPRVVQGEFNKDGTEVWFSVWNGKDQESALVVVD 535 (567)
T ss_dssp HHHTCEEEEEGGGCCCSSSCCCEEEECHHHHHTCCSSCCEEEEEEECTTSSEEEEEEECCTTSCCEEEEEE
T ss_pred ccCceEEEEECCcccccccCCCcEEeccccccccCCCCcceEeeeECCCCCEEEEEeecCCCCCCcEEEEE
Confidence 359999999876 2 1 1121 12457899999999997776632 68888875
|
| >1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1 | Back alignment and structure |
|---|
Probab=99.72 E-value=4.7e-15 Score=157.39 Aligned_cols=237 Identities=10% Similarity=0.154 Sum_probs=175.2
Q ss_pred CCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEec------cCCCCeEEEEE-cCCCCEEEEEeC-CCeEEEE
Q 003236 553 ASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLE------EHTQWITDVRF-SPSLSRLATSSA-DRTVRVW 624 (837)
Q Consensus 553 ~H~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~------~h~~~I~~l~f-spdg~~Latgs~-Dg~I~IW 624 (837)
+|-..+.+++++++|+++++...++.|.+||.. ++.+..+. .+...+.++++ .+++.++++... ++.|++|
T Consensus 27 g~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~ 105 (286)
T 1q7f_A 27 GQFTEPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIY 105 (286)
T ss_dssp TCBSCEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEE
T ss_pred CccCCCceEEECCCCCEEEEECCCCEEEEECCC-CcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEEE
Confidence 455678999999999988888889999999977 56666553 24467899999 466766666543 8899999
Q ss_pred EcCCCCceeEEee-ccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeeEEec---CCCeeEEEEecCCCEEEEE
Q 003236 625 DTENPDYSLRTFT-GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC---QSGATQMRFQPRLGRILAA 700 (837)
Q Consensus 625 Dl~~~~~~~~~~~-~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~---~~~i~sl~~sp~g~~llag 700 (837)
|.. ++. +..+. .+...+.++++++++. ++++...++.|++||.. ++.+..+.. ...+..+++++++..+++.
T Consensus 106 d~~-g~~-~~~~~~~~~~~~~~i~~~~~g~-l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~ 181 (286)
T 1q7f_A 106 NQY-GQF-VRKFGATILQHPRGVTVDNKGR-IIVVECKVMRVIIFDQN-GNVLHKFGCSKHLEFPNGVVVNDKQEIFISD 181 (286)
T ss_dssp CTT-SCE-EEEECTTTCSCEEEEEECTTSC-EEEEETTTTEEEEECTT-SCEEEEEECTTTCSSEEEEEECSSSEEEEEE
T ss_pred CCC-CcE-EEEecCccCCCceEEEEeCCCC-EEEEECCCCEEEEEcCC-CCEEEEeCCCCccCCcEEEEECCCCCEEEEE
Confidence 943 443 44443 3446789999999976 66677778899999965 555655542 2458899999998766655
Q ss_pred EcCCeEEEEECCCCeEEEEEcCC--CCCEEEEEEcCCCCEEEEEe-CC-eEEEEEcCCCCCceeEEEeecCC--CceEEE
Q 003236 701 AIENYISILDVETQVCRLKLQGH--KNQVHSVCWNTSGEYLASVS-DE-LVRVWSIGSGSKGECIHELSCTG--NKFHSC 774 (837)
Q Consensus 701 s~dg~I~iwDl~s~~~~~~l~~h--~~~V~sl~~spdg~~Lasgs-Dg-~I~IwDl~s~~~~~~i~~~~~~~--~~I~sv 774 (837)
..++.|.+||.. +..+..+..+ ...+.+|+++++|.++++.. ++ .|.+||.. + ..+..+..+. ..+..+
T Consensus 182 ~~~~~i~~~~~~-g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~~-g---~~~~~~~~~~~~~~~~~i 256 (286)
T 1q7f_A 182 NRAHCVKVFNYE-GQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQD-G---QLISALESKVKHAQCFDV 256 (286)
T ss_dssp GGGTEEEEEETT-CCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECTT-S---CEEEEEEESSCCSCEEEE
T ss_pred CCCCEEEEEcCC-CCEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECCC-C---CEEEEEcccCCCCcceeE
Confidence 668999999985 4555566433 36789999999999888887 65 99999954 3 3444444433 347899
Q ss_pred EEeCCCCEEEEEEcCCeEEEEECCCC
Q 003236 775 VFHPTFPSLLVIGCYETLELWNMTEN 800 (837)
Q Consensus 775 ~fspdg~~L~sgs~dg~I~IwDl~s~ 800 (837)
+++|++..+++ +.++.|++|++...
T Consensus 257 ~~~~~g~l~vs-~~~~~v~v~~~~~~ 281 (286)
T 1q7f_A 257 ALMDDGSVVLA-SKDYRLYIYRYVQL 281 (286)
T ss_dssp EEETTTEEEEE-ETTTEEEEEECSCC
T ss_pred EECCCCcEEEE-CCCCeEEEEEcccc
Confidence 99999975544 77899999997653
|
| >3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp} | Back alignment and structure |
|---|
Probab=99.72 E-value=6.9e-16 Score=170.74 Aligned_cols=244 Identities=11% Similarity=0.107 Sum_probs=168.6
Q ss_pred EecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEeccCCCCeEEEE--EcCCCCEEEEE------------
Q 003236 550 LIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVR--FSPSLSRLATS------------ 615 (837)
Q Consensus 550 ~l~~H~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~I~~l~--fspdg~~Latg------------ 615 (837)
...+|...+.+++|+|||+.|++++.++.|++||+.+++....+..+...+.... +++++++++..
T Consensus 75 lt~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~ 154 (388)
T 3pe7_A 75 LTEGRGDNTFGGFLSPDDDALFYVKDGRNLMRVDLATLEENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTD 154 (388)
T ss_dssp CCCSSCBCSSSCEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCS
T ss_pred eeeCCCCCccceEEcCCCCEEEEEeCCCeEEEEECCCCcceeeeechhhcccccceeECCCCCeeccccccCcccccccc
Confidence 3445666666788999999999999999999999999988777766666665444 48899988743
Q ss_pred ----------eCCCeEEEEEcCCCCceeEEeeccccceEEEEEcC-CCCeEEEEEeC-----CCcEEEEECCCCeeeeEE
Q 003236 616 ----------SADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHP-SKEDLLCSCDN-----NSEIRYWSINNGSCAGVF 679 (837)
Q Consensus 616 ----------s~Dg~I~IWDl~~~~~~~~~~~~h~~~V~sl~fsp-dg~~llasgs~-----Dg~I~vwDl~t~~~i~~~ 679 (837)
..+..|++||+.+++ ...+..+...+..+.|+| ++..++++... ...|+++|+..+......
T Consensus 155 ~~~~~~~~~~~~~~~l~~~d~~~g~--~~~l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~ 232 (388)
T 3pe7_A 155 WKKFHEFYFTKPCCRLMRVDLKTGE--STVILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNMRKVK 232 (388)
T ss_dssp HHHHHHHGGGCCCEEEEEEETTTCC--EEEEEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCCEESC
T ss_pred cchhhhhhccCCcceEEEEECCCCc--eEEeecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCceEEee
Confidence 244789999999865 455556677899999999 88766655542 347888998766544433
Q ss_pred ecCC--CeeEEEEecCCCEEEEEEc-CC----eEEEEECCCCeEE--EEEcCCCCC---EEEEEEcCCCCEEEEE-----
Q 003236 680 KCQS--GATQMRFQPRLGRILAAAI-EN----YISILDVETQVCR--LKLQGHKNQ---VHSVCWNTSGEYLASV----- 742 (837)
Q Consensus 680 ~~~~--~i~sl~~sp~g~~llags~-dg----~I~iwDl~s~~~~--~~l~~h~~~---V~sl~~spdg~~Lasg----- 742 (837)
.... .+..+.|+|+++.|+..+. ++ .|++||+.+++.. ..+.++... +..++|+|||+.|+..
T Consensus 233 ~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~ 312 (388)
T 3pe7_A 233 THAEGESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDS 312 (388)
T ss_dssp CCCTTEEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC--------
T ss_pred eCCCCcccccceECCCCCEEEEEecCCCCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccCCCcceeEeeecc
Confidence 3332 3677899999998766554 22 3999999988643 333321100 1123799999987753
Q ss_pred ----e-CCeEEEEEcCCCCCceeEEEeecCCC-----------ceEEEEEeCCCCEEEEEEc-CC--eEEEEECCC
Q 003236 743 ----S-DELVRVWSIGSGSKGECIHELSCTGN-----------KFHSCVFHPTFPSLLVIGC-YE--TLELWNMTE 799 (837)
Q Consensus 743 ----s-Dg~I~IwDl~s~~~~~~i~~~~~~~~-----------~I~sv~fspdg~~L~sgs~-dg--~I~IwDl~s 799 (837)
. +..|++||+.++. +..+..+.. .+..++|+|||+.|++++. ++ .|+++++..
T Consensus 313 ~~~~~~~~~i~~~d~~~~~----~~~l~~~~~~~~~~~~~~~~~~~~~~~spDg~~l~~~s~~~g~~~l~~~~l~~ 384 (388)
T 3pe7_A 313 GYKIENDPFLYVFNMKNGT----QHRVARHDTSWKVFEGDRQVTHPHPSFTPDDKQILFTSDVHGKPALYLATLPE 384 (388)
T ss_dssp ----CCCCEEEEEETTTTE----EEEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEEECCG
T ss_pred ccccCCCCEEEEEeccCCc----eEEeccccCcccccccccccCCCCccCCCCCCEEEEEecCCCceeEEEEECCh
Confidence 2 5589999998862 233444444 4778899999998887775 45 455555543
|
| >1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1 | Back alignment and structure |
|---|
Probab=99.72 E-value=8.2e-15 Score=155.56 Aligned_cols=234 Identities=12% Similarity=0.125 Sum_probs=172.6
Q ss_pred cCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeEEee------ccccceEEEEEcCCCCeEEEEEeC-CCcEEE
Q 003236 595 EHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFT------GHSTTVMSLDFHPSKEDLLCSCDN-NSEIRY 667 (837)
Q Consensus 595 ~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~~~~~~~~~~------~h~~~V~sl~fspdg~~llasgs~-Dg~I~v 667 (837)
++-..+.++++++++.++++...++.|.+||... +. +..+. ++...+.++++++.+..++++... ++.|++
T Consensus 27 g~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~g-~~-~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~ 104 (286)
T 1q7f_A 27 GQFTEPSGVAVNAQNDIIVADTNNHRIQIFDKEG-RF-KFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQI 104 (286)
T ss_dssp TCBSCEEEEEECTTCCEEEEEGGGTEEEEECTTS-CE-EEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEE
T ss_pred CccCCCceEEECCCCCEEEEECCCCEEEEECCCC-cE-EEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEE
Confidence 4556789999999999888888899999999873 32 34332 244578899995333456655543 789999
Q ss_pred EECCCCeeeeEEec--CCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEc--CCCCCEEEEEEcCCCCEEEEEe
Q 003236 668 WSINNGSCAGVFKC--QSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQ--GHKNQVHSVCWNTSGEYLASVS 743 (837)
Q Consensus 668 wDl~t~~~i~~~~~--~~~i~sl~~sp~g~~llags~dg~I~iwDl~s~~~~~~l~--~h~~~V~sl~~spdg~~Lasgs 743 (837)
|| .+++.+..+.. ...+..+++++++..+++...++.|.+||.. ++.+..+. .+...+.+|+++++++++++..
T Consensus 105 ~d-~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~ 182 (286)
T 1q7f_A 105 YN-QYGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQN-GNVLHKFGCSKHLEFPNGVVVNDKQEIFISDN 182 (286)
T ss_dssp EC-TTSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECTTTCSSEEEEEECSSSEEEEEEG
T ss_pred EC-CCCcEEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCC-CCEEEEeCCCCccCCcEEEEECCCCCEEEEEC
Confidence 99 56777666643 2468899999998866666667899999965 45555553 3556789999999999877776
Q ss_pred -CCeEEEEEcCCCCCceeEEEeecC--CCceEEEEEeCCCCEEEEEEcCC-eEEEEECCCCcEEEeccCC--CCeeEEEE
Q 003236 744 -DELVRVWSIGSGSKGECIHELSCT--GNKFHSCVFHPTFPSLLVIGCYE-TLELWNMTENKTLTLSAHD--KLVSSLAA 817 (837)
Q Consensus 744 -Dg~I~IwDl~s~~~~~~i~~~~~~--~~~I~sv~fspdg~~L~sgs~dg-~I~IwDl~s~~~~~l~~h~--~~V~sla~ 817 (837)
++.|++||... ..+..+... ...+..++++++|..+++...++ .|.+||........+..+. ..+.++++
T Consensus 183 ~~~~i~~~~~~g----~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~~i~~ 258 (286)
T 1q7f_A 183 RAHCVKVFNYEG----QYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQDGQLISALESKVKHAQCFDVAL 258 (286)
T ss_dssp GGTEEEEEETTC----CEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECTTSCEEEEEEESSCCSCEEEEEE
T ss_pred CCCEEEEEcCCC----CEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECCCCCEEEEEcccCCCCcceeEEE
Confidence 88999999743 344455433 25789999999998777776675 9999996544333444333 34789999
Q ss_pred eCCCCEEEEEECCCcEEEeC
Q 003236 818 STVNGMVASASHDKCVKIWK 837 (837)
Q Consensus 818 spdg~~LaSgs~DG~I~IWd 837 (837)
+++|+++++ +.|+.|+||+
T Consensus 259 ~~~g~l~vs-~~~~~v~v~~ 277 (286)
T 1q7f_A 259 MDDGSVVLA-SKDYRLYIYR 277 (286)
T ss_dssp ETTTEEEEE-ETTTEEEEEE
T ss_pred CCCCcEEEE-CCCCeEEEEE
Confidence 999987777 6799999995
|
| >2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* | Back alignment and structure |
|---|
Probab=99.71 E-value=9.8e-14 Score=146.98 Aligned_cols=274 Identities=8% Similarity=-0.035 Sum_probs=194.8
Q ss_pred ecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEE-EeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCC
Q 003236 551 IPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKS-TLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENP 629 (837)
Q Consensus 551 l~~H~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~~~-~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~~ 629 (837)
+..+...+.+++++++|+++++...++.|.+||.. ++... .+..+...+.++++++++.++++...++.|..||.. +
T Consensus 10 ~~~~~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g 87 (299)
T 2z2n_A 10 LTNQDTGPYGITVSDKGKVWITQHKANMISCINLD-GKITEYPLPTPDAKVMCLTISSDGEVWFTENAANKIGRITKK-G 87 (299)
T ss_dssp CCSSSCCEEEEEECTTSCEEEEETTTTEEEEECTT-CCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-S
T ss_pred CCCcCCCccceEECCCCCEEEEecCCCcEEEEcCC-CCeEEecCCcccCceeeEEECCCCCEEEeCCCCCeEEEECCC-C
Confidence 44566789999999999987776667899999988 55443 223355789999999999988877778899999986 3
Q ss_pred CceeEEeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeeEEe--cCCCeeEEEEecCCCEEEEEEcCCeEE
Q 003236 630 DYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK--CQSGATQMRFQPRLGRILAAAIENYIS 707 (837)
Q Consensus 630 ~~~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~--~~~~i~sl~~sp~g~~llags~dg~I~ 707 (837)
......+......+.++++++++. ++++...++.|.+||. +++...... ....+..+++.+++..+++...++.|.
T Consensus 88 ~~~~~~~~~~~~~~~~i~~~~~g~-l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~ 165 (299)
T 2z2n_A 88 IIKEYTLPNPDSAPYGITEGPNGD-IWFTEMNGNRIGRITD-DGKIREYELPNKGSYPSFITLGSDNALWFTENQNNAIG 165 (299)
T ss_dssp CEEEEECSSTTCCEEEEEECTTSC-EEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEE
T ss_pred cEEEEeCCCcCCCceeeEECCCCC-EEEEecCCceEEEECC-CCCEEEecCCCCCCCCceEEEcCCCCEEEEeCCCCEEE
Confidence 322222223456789999999875 5656666789999998 555443221 234688999999987666555678999
Q ss_pred EEECCCCeEEEE-EcCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEE
Q 003236 708 ILDVETQVCRLK-LQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLV 785 (837)
Q Consensus 708 iwDl~s~~~~~~-l~~h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fspdg~~L~s 785 (837)
+||. +++.... +..+...+.++++++++.++++.. ++.|.+||. ++.. ...........+..++++++|..+++
T Consensus 166 ~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~--~~~~~~~~~~~~~~i~~~~~g~l~v~ 241 (299)
T 2z2n_A 166 RITE-SGDITEFKIPTPASGPVGITKGNDDALWFVEIIGNKIGRITT-SGEI--TEFKIPTPNARPHAITAGAGIDLWFT 241 (299)
T ss_dssp EECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCE--EEEECSSTTCCEEEEEECSTTCEEEE
T ss_pred EEcC-CCcEEEeeCCCCCCcceeEEECCCCCEEEEccCCceEEEECC-CCcE--EEEECCCCCCCceeEEECCCCCEEEe
Confidence 9999 6654432 333456789999999999777765 789999998 5421 11223334567899999999984444
Q ss_pred EEcCCeEEEEECCCCcEEEe--ccCCCCeeEEEEeCCCCEEEEEECCCcEE
Q 003236 786 IGCYETLELWNMTENKTLTL--SAHDKLVSSLAASTVNGMVASASHDKCVK 834 (837)
Q Consensus 786 gs~dg~I~IwDl~s~~~~~l--~~h~~~V~sla~spdg~~LaSgs~DG~I~ 834 (837)
...++.|.+||. ++....+ ..+...+.++++ +++.++++.+.++.++
T Consensus 242 ~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~-~~g~l~v~~~~~~l~~ 290 (299)
T 2z2n_A 242 EWGANKIGRLTS-NNIIEEYPIQIKSAEPHGICF-DGETIWFAMECDKIGK 290 (299)
T ss_dssp ETTTTEEEEEET-TTEEEEEECSSSSCCEEEEEE-CSSCEEEEETTTEEEE
T ss_pred ccCCceEEEECC-CCceEEEeCCCCCCccceEEe-cCCCEEEEecCCcEEE
Confidence 446789999998 4554433 345578999999 8888777765444443
|
| >3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A | Back alignment and structure |
|---|
Probab=99.70 E-value=7.5e-16 Score=183.75 Aligned_cols=239 Identities=10% Similarity=0.072 Sum_probs=165.6
Q ss_pred EEEEc--CCCCE-EEEEEC-CCcEEEEeCC--CCeEEEEecc-----CCCCeEEEEEcCCCCEEEEEeCC----------
Q 003236 560 SCHFS--PDGKL-LATGGH-DKKAVLWCTE--SFTVKSTLEE-----HTQWITDVRFSPSLSRLATSSAD---------- 618 (837)
Q Consensus 560 sl~fS--pdg~~-Lasgs~-Dg~I~VWd~~--t~~~~~~l~~-----h~~~I~~l~fspdg~~Latgs~D---------- 618 (837)
.+.|+ |||++ |+.++. +..|++|++. .......+.. |...+.+++|+|||+.|++++.|
T Consensus 81 ~~~~~~SPDg~~~la~~~~~~~~l~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~ 160 (662)
T 3azo_A 81 PWAGVPRPAGGPLLVFTHFGDQRLYAFEPDAPGGAVPRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVR 160 (662)
T ss_dssp CEEEECCSSSSCEEEEEBTTTCCEEEECTTSTTCCCCEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEE
T ss_pred cceeeeecCCCeEEEEEECCCCeEEEEcCCCCCCCCCEeccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCCce
Confidence 55565 99998 776654 5667777765 2033445555 67789999999999999999877
Q ss_pred CeEEEEEcCC------CCceeEEee-ccccceEEEEEcCCCCeEEEEEeCC-------CcEEEEECC-CC---eeeeEEe
Q 003236 619 RTVRVWDTEN------PDYSLRTFT-GHSTTVMSLDFHPSKEDLLCSCDNN-------SEIRYWSIN-NG---SCAGVFK 680 (837)
Q Consensus 619 g~I~IWDl~~------~~~~~~~~~-~h~~~V~sl~fspdg~~llasgs~D-------g~I~vwDl~-t~---~~i~~~~ 680 (837)
..|++||+.+ +. ...+. .+...+..++|+|||+.+++++... ..|++||+. ++ +......
T Consensus 161 ~~i~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~ 238 (662)
T 3azo_A 161 RFLAAVPLDGSAAADRSA--VRELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLG 238 (662)
T ss_dssp EEEEEEETTSTTTTCGGG--SEESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEE
T ss_pred eEEEEEECCCCccccCCc--eeEEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCC
Confidence 5899999987 33 34555 5667888999999998776555432 479999999 56 4444444
Q ss_pred c-CCCeeEEEEecCCCEEEEEEcCC--eEEEEECCCCeEEEEEcCCCCC--------EEEEEEcCCCCEEEEEeCCeEEE
Q 003236 681 C-QSGATQMRFQPRLGRILAAAIEN--YISILDVETQVCRLKLQGHKNQ--------VHSVCWNTSGEYLASVSDELVRV 749 (837)
Q Consensus 681 ~-~~~i~sl~~sp~g~~llags~dg--~I~iwDl~s~~~~~~l~~h~~~--------V~sl~~spdg~~LasgsDg~I~I 749 (837)
. ...+..+.|+|+++.++++..++ .|.+||+.+++.......+... +.+++|++++.+++++.++.++|
T Consensus 239 ~~~~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~~~~~l 318 (662)
T 3azo_A 239 GPEEAIAQAEWAPDGSLIVATDRTGWWNLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGKGAAVL 318 (662)
T ss_dssp ETTBCEEEEEECTTSCEEEEECTTSSCEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBSSSCEE
T ss_pred CCCceEcceEECCCCeEEEEECCCCCeEEEEEECCCCceeecccccccccCccccccCceEeEeCCCEEEEEEEcCccEE
Confidence 3 46789999999999666666677 6777787777655443333222 56789999999988877677788
Q ss_pred E--EcCCCCCceeEEEeecCCCceEEEEEeCCCCEEE--EEEcCC--eEEEEECCCCcEEEe
Q 003236 750 W--SIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLL--VIGCYE--TLELWNMTENKTLTL 805 (837)
Q Consensus 750 w--Dl~s~~~~~~i~~~~~~~~~I~sv~fspdg~~L~--sgs~dg--~I~IwDl~s~~~~~l 805 (837)
| |+.++ .+..+..+...+..+. ++++..++ +++.+. .|++||+.+++...+
T Consensus 319 ~~~d~~~~----~~~~l~~~~~~~~~~~-s~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~l 375 (662)
T 3azo_A 319 GILDPESG----ELVDAAGPWTEWAATL-TVSGTRAVGVAASPRTAYEVVELDTVTGRARTI 375 (662)
T ss_dssp EEEETTTT----EEEECCSSCCEEEEEE-EEETTEEEEEEEETTEEEEEEEEETTTCCEEEE
T ss_pred EEEECCCC----cEEEecCCCCeEEEEE-ecCCCEEEEEEcCCCCCCEEEEEECCCCceEEe
Confidence 8 54443 3566666666777661 44444433 333333 677778888876654
|
| >3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A* | Back alignment and structure |
|---|
Probab=99.69 E-value=5.4e-15 Score=161.30 Aligned_cols=234 Identities=10% Similarity=0.068 Sum_probs=173.5
Q ss_pred CCCeEEEEEcCCCCEEEEEeCC------------------------CeEEEEEcCCCCceeEEee-ccccceEEEEEcCC
Q 003236 597 TQWITDVRFSPSLSRLATSSAD------------------------RTVRVWDTENPDYSLRTFT-GHSTTVMSLDFHPS 651 (837)
Q Consensus 597 ~~~I~~l~fspdg~~Latgs~D------------------------g~I~IWDl~~~~~~~~~~~-~h~~~V~sl~fspd 651 (837)
-+.|.+|+++++|+++++.+.+ ++|.+||..+++. +..+. ++-..+..++++++
T Consensus 23 l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~-~~~~~~~~~~~p~gia~d~~ 101 (329)
T 3fvz_A 23 PGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEI-LQSSGKNLFYLPHGLSIDTD 101 (329)
T ss_dssp CSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCE-EEEECTTTCSSEEEEEECTT
T ss_pred cCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeE-EeccCCCccCCceEEEECCC
Confidence 3579999999999988888777 4799999987765 33332 44567899999999
Q ss_pred CCeEEEEEeCCCcEEEEECCCCe-eeeEEec----------CCCeeEEEEec-CCCEEEEEE-cCCeEEEEECCCCeEEE
Q 003236 652 KEDLLCSCDNNSEIRYWSINNGS-CAGVFKC----------QSGATQMRFQP-RLGRILAAA-IENYISILDVETQVCRL 718 (837)
Q Consensus 652 g~~llasgs~Dg~I~vwDl~t~~-~i~~~~~----------~~~i~sl~~sp-~g~~llags-~dg~I~iwDl~s~~~~~ 718 (837)
+. ++++...++.|++||..... .+..+.. ......++++| ++..+++.+ .++.|++|| .++..+.
T Consensus 102 g~-l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~-~~g~~~~ 179 (329)
T 3fvz_A 102 GN-YWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFS-PSGKFVT 179 (329)
T ss_dssp SC-EEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEEC-TTSCEEE
T ss_pred CC-EEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEc-CCCCEEE
Confidence 87 77777778999999986542 4444421 12478999999 556555554 589999999 5566666
Q ss_pred EEcCC----------CCCEEEEEEcCC-CCEEEEEe-CCeEEEEEcCCCCCceeEEEee--cCCCceEEEEEeCCCCEEE
Q 003236 719 KLQGH----------KNQVHSVCWNTS-GEYLASVS-DELVRVWSIGSGSKGECIHELS--CTGNKFHSCVFHPTFPSLL 784 (837)
Q Consensus 719 ~l~~h----------~~~V~sl~~spd-g~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~--~~~~~I~sv~fspdg~~L~ 784 (837)
.+... -..+.+|+++|+ +.++++.. ++.|++||..++ +.+..+. .+...+..++|+| +..++
T Consensus 180 ~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G---~~~~~~~~~~~~~~~~~~~~~p-g~~~~ 255 (329)
T 3fvz_A 180 QWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTK---EFVREIKHASFGRNVFAISYIP-GFLFA 255 (329)
T ss_dssp EECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTC---CEEEEECCTTTTTCEEEEEEET-TEEEE
T ss_pred EeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCC---cEEEEEeccccCCCcceeeecC-CEEEE
Confidence 66422 234899999999 56555555 889999999866 4555553 4556788999999 32222
Q ss_pred EE-------EcCCeEEEEECCCCcEEEe----ccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 003236 785 VI-------GCYETLELWNMTENKTLTL----SAHDKLVSSLAASTVNGMVASASHDKCVKIWK 837 (837)
Q Consensus 785 sg-------s~dg~I~IwDl~s~~~~~l----~~h~~~V~sla~spdg~~LaSgs~DG~I~IWd 837 (837)
+. ..+..|++||+.+++.+.. ..+...+.+|+++++|.++++...++.|++|+
T Consensus 256 ~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~dG~lyvad~~~~~I~~~~ 319 (329)
T 3fvz_A 256 VNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVASEDGTVYIGDAHTNTVWKFT 319 (329)
T ss_dssp EECCCCTTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEEEECTTSEEEEEESSSCCEEEEE
T ss_pred eCCCEEeccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEECCCCCEEEEECCCCEEEEEe
Confidence 22 2234899999999998854 35777899999999998888888899999985
|
| >2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A | Back alignment and structure |
|---|
Probab=99.69 E-value=5.1e-14 Score=152.72 Aligned_cols=244 Identities=13% Similarity=0.117 Sum_probs=176.2
Q ss_pred EEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCC----CeEEE
Q 003236 548 FQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSAD----RTVRV 623 (837)
Q Consensus 548 ~~~l~~H~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~D----g~I~I 623 (837)
+..+..+...+.+++|+++|++++++..++.|.+||.++++.......+...+.+++|+++++++++...+ +.|.+
T Consensus 37 ~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~ 116 (333)
T 2dg1_A 37 WLEISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFA 116 (333)
T ss_dssp EEEEESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEE
T ss_pred eEEEeccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcEEEEeeCCCCCcceEEECCCCcEEEEeCCCCCCCceEEE
Confidence 44566777788999999999988888889999999998887766554567789999999999888877666 68999
Q ss_pred EEcCCCCceeEEee--ccccceEEEEEcCCCCeEEEEEeC------CCcEEEEECCCCeeeeEEecCCCeeEEEEecCCC
Q 003236 624 WDTENPDYSLRTFT--GHSTTVMSLDFHPSKEDLLCSCDN------NSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLG 695 (837)
Q Consensus 624 WDl~~~~~~~~~~~--~h~~~V~sl~fspdg~~llasgs~------Dg~I~vwDl~t~~~i~~~~~~~~i~sl~~sp~g~ 695 (837)
||..+.... ..+. .+...+.+++++|++. ++++... .+.|+.||..+++..........+..++|+|+++
T Consensus 117 ~d~~~~~~~-~~~~~~~~~~~~~~i~~d~~g~-l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~dg~ 194 (333)
T 2dg1_A 117 ATENGDNLQ-DIIEDLSTAYCIDDMVFDSKGG-FYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQNISVANGIALSTDEK 194 (333)
T ss_dssp ECTTSCSCE-EEECSSSSCCCEEEEEECTTSC-EEEEECCCBTTBCCEEEEEECTTSCCEEEEEEEESSEEEEEECTTSS
T ss_pred EeCCCCEEE-EEEccCccCCcccceEECCCCC-EEEEeccccccCCCceEEEEeCCCCEEEEeecCCCcccceEECCCCC
Confidence 999876542 1222 2446789999999986 4444432 3567777776665554444445678999999998
Q ss_pred EEEEEE-cCCeEEEEECCC-CeEEE--------EEcCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEe
Q 003236 696 RILAAA-IENYISILDVET-QVCRL--------KLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHEL 764 (837)
Q Consensus 696 ~llags-~dg~I~iwDl~s-~~~~~--------~l~~h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~ 764 (837)
.++++. .++.|.+||+.+ +..+. .+.++ ..+..++++++|.++++.. ++.|.+||.. + ..+..+
T Consensus 195 ~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~-~~~~~i~~d~~G~l~v~~~~~~~v~~~d~~-g---~~~~~~ 269 (333)
T 2dg1_A 195 VLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGH-EGPDSCCIDSDDNLYVAMYGQGRVLVFNKR-G---YPIGQI 269 (333)
T ss_dssp EEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSS-SEEEEEEEBTTCCEEEEEETTTEEEEECTT-S---CEEEEE
T ss_pred EEEEEeCCCCeEEEEEecCCCcCcccccceEEEecCCC-CCCCceEECCCCCEEEEEcCCCEEEEECCC-C---CEEEEE
Confidence 776665 478999999963 22111 11222 4678899999999888776 7899999984 3 344444
Q ss_pred ecCCC------ceEEEEEeCCCCEEEEEEcCC------eEEEEECC
Q 003236 765 SCTGN------KFHSCVFHPTFPSLLVIGCYE------TLELWNMT 798 (837)
Q Consensus 765 ~~~~~------~I~sv~fspdg~~L~sgs~dg------~I~IwDl~ 798 (837)
..... .+.+++|++++..|++++.++ .|+.+++.
T Consensus 270 ~~~~~~~g~~~~~~~~~~~~dg~~L~v~~~~g~~~~~~~l~~~~~~ 315 (333)
T 2dg1_A 270 LIPGRDEGHMLRSTHPQFIPGTNQLIICSNDIEMGGGSMLYTVNGF 315 (333)
T ss_dssp ECTTGGGTCSCBCCEEEECTTSCEEEEEEECGGGTCCEEEEEEECS
T ss_pred EcCCCccccccCcceEEECCCCCEEEEEeCccCCCCCceEEEEecc
Confidence 43332 588999999988888777764 45555543
|
| >3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.68 E-value=1.7e-14 Score=154.09 Aligned_cols=243 Identities=9% Similarity=0.058 Sum_probs=179.0
Q ss_pred EEecCCCCCeEEEEEcCCCC-EEEEEECCCcEEEEeCCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcC
Q 003236 549 QLIPASTSKVESCHFSPDGK-LLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTE 627 (837)
Q Consensus 549 ~~l~~H~~~V~sl~fSpdg~-~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~ 627 (837)
..+..+.....+++|+|+|+ +++++..++.|.+||..++ ...+..+...+.+++|+++++++++...++.|.+||..
T Consensus 21 ~~l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d~~ 98 (296)
T 3e5z_A 21 RRLADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ--LSPEMHPSHHQNGHCLNKQGHLIACSHGLRRLERQREP 98 (296)
T ss_dssp EEEECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC--EEEEESSCSSEEEEEECTTCCEEEEETTTTEEEEECST
T ss_pred EEEecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC--eEEEECCCCCcceeeECCCCcEEEEecCCCeEEEEcCC
Confidence 34446667788999999998 7888888999999999887 55666677889999999999988777777899999997
Q ss_pred CCCceeEEeec----cccceEEEEEcCCCCeEEEE----Ee-------------CCCcEEEEECCCCeeeeEEecCCCee
Q 003236 628 NPDYSLRTFTG----HSTTVMSLDFHPSKEDLLCS----CD-------------NNSEIRYWSINNGSCAGVFKCQSGAT 686 (837)
Q Consensus 628 ~~~~~~~~~~~----h~~~V~sl~fspdg~~llas----gs-------------~Dg~I~vwDl~t~~~i~~~~~~~~i~ 686 (837)
+++... .... ....+.+++++|+|. ++++ +. ..+.|+.++.. ++............
T Consensus 99 ~g~~~~-~~~~~~~~~~~~~~~i~~d~~G~-l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~~~~~~~ 175 (296)
T 3e5z_A 99 GGEWES-IADSFEGKKLNSPNDVCLAPDGS-LWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTLSAPIRDRVKPN 175 (296)
T ss_dssp TCCEEE-EECEETTEECCCCCCEEECTTSC-EEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCEEEEECCCSSEE
T ss_pred CCcEEE-EeeccCCCCCCCCCCEEECCCCC-EEEECCccccccccccccccccCCCcEEEEECCC-CCEEEeecCCCCCc
Confidence 766322 1111 123567899999986 5555 22 13466667666 55444444445678
Q ss_pred EEEEecCCCEEEEEEcCCeEEEEECC-CCeE---EEEEcCCCCCEEEEEEcCCCCEEEEEeCCeEEEEEcCCCCCceeEE
Q 003236 687 QMRFQPRLGRILAAAIENYISILDVE-TQVC---RLKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIH 762 (837)
Q Consensus 687 sl~~sp~g~~llags~dg~I~iwDl~-s~~~---~~~l~~h~~~V~sl~~spdg~~LasgsDg~I~IwDl~s~~~~~~i~ 762 (837)
.++|+|+++.+++.+.++.|.+||+. ++.. ...+..+...+.+++++++|+++++. ++.|.+||.. + ..+.
T Consensus 176 gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~-~~~v~~~~~~-g---~~~~ 250 (296)
T 3e5z_A 176 GLAFLPSGNLLVSDTGDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDAGGLIWASA-GDGVHVLTPD-G---DELG 250 (296)
T ss_dssp EEEECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBTTSCEEEEE-TTEEEEECTT-S---CEEE
T ss_pred cEEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECCCCCEEEEc-CCeEEEECCC-C---CEEE
Confidence 99999999988555567899999987 4544 33333355667889999999987777 8899999986 3 4566
Q ss_pred EeecCCCceEEEEE-eCCCCEEEEEEcCCeEEEEECCCCcEE
Q 003236 763 ELSCTGNKFHSCVF-HPTFPSLLVIGCYETLELWNMTENKTL 803 (837)
Q Consensus 763 ~~~~~~~~I~sv~f-spdg~~L~sgs~dg~I~IwDl~s~~~~ 803 (837)
.+..+.. +.+++| .++++.|++++.+ .|..++..+.++.
T Consensus 251 ~~~~~~~-~~~~~f~~~d~~~L~v~t~~-~l~~~~~~~~~~~ 290 (296)
T 3e5z_A 251 RVLTPQT-TSNLCFGGPEGRTLYMTVST-EFWSIETNVRGLE 290 (296)
T ss_dssp EEECSSC-CCEEEEESTTSCEEEEEETT-EEEEEECSCCBCC
T ss_pred EEECCCC-ceeEEEECCCCCEEEEEcCC-eEEEEEccccccc
Confidence 6666666 889999 5898988888875 5667777766543
|
| >2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A* | Back alignment and structure |
|---|
Probab=99.68 E-value=6.3e-15 Score=177.95 Aligned_cols=244 Identities=8% Similarity=-0.021 Sum_probs=175.7
Q ss_pred CCCCeEEEEEcCCCCEEEEEECCC-----cEEEEeCCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCe--------
Q 003236 554 STSKVESCHFSPDGKLLATGGHDK-----KAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRT-------- 620 (837)
Q Consensus 554 H~~~V~sl~fSpdg~~Lasgs~Dg-----~I~VWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~-------- 620 (837)
|...+.+++|||||++||.+..++ .|++||+.+++.......+ ..+.+++|+|||+.|+.++.++.
T Consensus 123 ~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~~-~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~ 201 (710)
T 2xdw_A 123 GTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLER-VKFSCMAWTHDGKGMFYNAYPQQDGKSDGTE 201 (710)
T ss_dssp SCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEE-ECSCCEEECTTSSEEEEEECCCCSSCCSSSC
T ss_pred CCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcccccC-cccceEEEEeCCCEEEEEEECCccccccccc
Confidence 444688999999999999876543 8999999999887643222 23678999999999999988766
Q ss_pred --------EEEEEcCCCCce-eEEee--ccccceEEEEEcCCCCeEEEEEeC----CCcEEEEECCC------Ce-eeeE
Q 003236 621 --------VRVWDTENPDYS-LRTFT--GHSTTVMSLDFHPSKEDLLCSCDN----NSEIRYWSINN------GS-CAGV 678 (837)
Q Consensus 621 --------I~IWDl~~~~~~-~~~~~--~h~~~V~sl~fspdg~~llasgs~----Dg~I~vwDl~t------~~-~i~~ 678 (837)
|++|++.++... ...+. .|...+..+.|+|+++.++++... +..|++||+.+ +. ....
T Consensus 202 ~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~ 281 (710)
T 2xdw_A 202 TSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVK 281 (710)
T ss_dssp CCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEE
T ss_pred cccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccceEE
Confidence 999999876532 22222 345668899999999987766642 56899999986 42 2344
Q ss_pred EecCCCeeEEEEecCCCEEEEEEcC----CeEEEEECCCCe--EEEEEcCCCC--CEEEEEEcCCCCEEEEEe-CC--eE
Q 003236 679 FKCQSGATQMRFQPRLGRILAAAIE----NYISILDVETQV--CRLKLQGHKN--QVHSVCWNTSGEYLASVS-DE--LV 747 (837)
Q Consensus 679 ~~~~~~i~sl~~sp~g~~llags~d----g~I~iwDl~s~~--~~~~l~~h~~--~V~sl~~spdg~~Lasgs-Dg--~I 747 (837)
+..........|+++++.|+..+.. ..|.+||+.++. ....+..|.. .+..++|++++.++++.. |+ .|
T Consensus 282 l~~~~~~~~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~lv~~~~~~g~~~l 361 (710)
T 2xdw_A 282 LIDNFEGEYDYVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCYLHDVKNTL 361 (710)
T ss_dssp EECSSSSCEEEEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEETTTEEEEEEEETTEEEE
T ss_pred eeCCCCcEEEEEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEEcCCEEEEEEEECCEEEE
Confidence 4432222233588999988887764 369999998763 1233444443 688899997777777777 77 46
Q ss_pred EEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcC----CeEEEEECCCCc
Q 003236 748 RVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCY----ETLELWNMTENK 801 (837)
Q Consensus 748 ~IwDl~s~~~~~~i~~~~~~~~~I~sv~fspdg~~L~sgs~d----g~I~IwDl~s~~ 801 (837)
++||+.++ ..+..+..+...+..+.++|++..|++.... +.|++||+.+++
T Consensus 362 ~~~~~~~g---~~~~~l~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~ 416 (710)
T 2xdw_A 362 QLHDLATG---ALLKIFPLEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEE 416 (710)
T ss_dssp EEEETTTC---CEEEEECCCSSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred EEEECCCC---CEEEecCCCCceEEEEecCCCCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence 67777565 4556666667778889999999877655433 489999998877
|
| >3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis} | Back alignment and structure |
|---|
Probab=99.67 E-value=2.9e-14 Score=155.67 Aligned_cols=251 Identities=10% Similarity=0.019 Sum_probs=188.3
Q ss_pred CCCcEEEEeCCCCeEEEEec------cCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeEEeeccccceEEEEE
Q 003236 575 HDKKAVLWCTESFTVKSTLE------EHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDF 648 (837)
Q Consensus 575 ~Dg~I~VWd~~t~~~~~~l~------~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~sl~f 648 (837)
.++.|.+||.++++....+. .......++.+. +++++++...++.|.+||..+.+. +..+. .......+++
T Consensus 15 ~~~~l~~~d~~t~~~~~~i~~~~n~~~lg~~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~~~-~~~i~-~~~~p~~i~~ 91 (328)
T 3dsm_A 15 SNATLSYYDPATCEVENEVFYRANGFKLGDVAQSMVIR-DGIGWIVVNNSHVIFAIDINTFKE-VGRIT-GFTSPRYIHF 91 (328)
T ss_dssp CCBEEEEEETTTTEEECSHHHHHHSSCCBSCEEEEEEE-TTEEEEEEGGGTEEEEEETTTCCE-EEEEE-CCSSEEEEEE
T ss_pred CCceEEEEECCCCEEhhhhHhhhcCcccCccceEEEEE-CCEEEEEEcCCCEEEEEECcccEE-EEEcC-CCCCCcEEEE
Confidence 37899999999998876542 122446778874 345555666689999999998764 44454 3467889999
Q ss_pred cCCCCeEEEEEeCCCcEEEEECCCCeeeeEEecCC------CeeEEEEecCCCEEEEEE--cCCeEEEEECCCCeEEEEE
Q 003236 649 HPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQS------GATQMRFQPRLGRILAAA--IENYISILDVETQVCRLKL 720 (837)
Q Consensus 649 spdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~~~------~i~sl~~sp~g~~llags--~dg~I~iwDl~s~~~~~~l 720 (837)
++++ .++++...++.|.+||+.+++....+.... ....+++ +++.++++. .++.|.+||+.+++.+..+
T Consensus 92 ~~~g-~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~--~~~~lyv~~~~~~~~v~viD~~t~~~~~~i 168 (328)
T 3dsm_A 92 LSDE-KAYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQ--YGKYVYVNCWSYQNRILKIDTETDKVVDEL 168 (328)
T ss_dssp EETT-EEEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE--ETTEEEEEECTTCCEEEEEETTTTEEEEEE
T ss_pred eCCC-eEEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEE--ECCEEEEEcCCCCCEEEEEECCCCeEEEEE
Confidence 8887 566666578999999999999888887655 5667777 456777776 3789999999999888877
Q ss_pred cCCCCCEEEEEEcCCCCEEEEEe-C----------CeEEEEEcCCCCCceeEEEeecC-CCceEEEEEeCCCCEEEEEEc
Q 003236 721 QGHKNQVHSVCWNTSGEYLASVS-D----------ELVRVWSIGSGSKGECIHELSCT-GNKFHSCVFHPTFPSLLVIGC 788 (837)
Q Consensus 721 ~~h~~~V~sl~~spdg~~Lasgs-D----------g~I~IwDl~s~~~~~~i~~~~~~-~~~I~sv~fspdg~~L~sgs~ 788 (837)
... .....++++++|++++++. + +.|.+||..++ +....+... ......++|+|+++.|+++..
T Consensus 169 ~~g-~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~---~v~~~~~~~~g~~p~~la~~~d~~~lyv~~~ 244 (328)
T 3dsm_A 169 TIG-IQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETF---TVEKQFKFKLGDWPSEVQLNGTRDTLYWINN 244 (328)
T ss_dssp ECS-SCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTT---EEEEEEECCTTCCCEEEEECTTSCEEEEESS
T ss_pred EcC-CCccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCC---eEEEEEecCCCCCceeEEEecCCCEEEEEcc
Confidence 643 3457889999999777766 4 68999999877 444444432 346899999999999988765
Q ss_pred CCeEEEEECCCCcEEE--ec-cCCCCeeEEEEeCC-CCEEEEE----ECCCcEEEeC
Q 003236 789 YETLELWNMTENKTLT--LS-AHDKLVSSLAASTV-NGMVASA----SHDKCVKIWK 837 (837)
Q Consensus 789 dg~I~IwDl~s~~~~~--l~-~h~~~V~sla~spd-g~~LaSg----s~DG~I~IWd 837 (837)
.|.+||..+++... +. .+.....+++++|+ +.++++. ..++.|.+||
T Consensus 245 --~v~~~d~~t~~~~~~~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d 299 (328)
T 3dsm_A 245 --DIWRMPVEADRVPVRPFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYS 299 (328)
T ss_dssp --SEEEEETTCSSCCSSCSBCCCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEEC
T ss_pred --EEEEEECCCCceeeeeeecCCCCceEEEEEcCCCCeEEEEcccccccCCEEEEEC
Confidence 89999999887642 11 22467899999994 5555555 5678999986
|
| >2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.66 E-value=1.8e-14 Score=156.96 Aligned_cols=232 Identities=18% Similarity=0.198 Sum_probs=163.3
Q ss_pred CCeEEEEEcCCCCEEEEEECC---C--cEEEEeCCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCC------------
Q 003236 556 SKVESCHFSPDGKLLATGGHD---K--KAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSAD------------ 618 (837)
Q Consensus 556 ~~V~sl~fSpdg~~Lasgs~D---g--~I~VWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~D------------ 618 (837)
..+.+++|||||++||+++.+ + .|++|++.+++.......+ . +.+++|+||++.|+.++.+
T Consensus 59 ~~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~-~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~ 136 (347)
T 2gop_A 59 ENATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLSSKKILEAK-N-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDD 136 (347)
T ss_dssp ESCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEEEEEEEES-E-EEEEEECTTSSEEEEEEECCCC---------
T ss_pred ccCCCeEECCCCCEEEEEEeccCCCcceEEEEECCCCceEEEEcCC-C-ccceeECCCCCEEEEEEccCCCcCCcEEEcc
Confidence 458899999999999987754 2 3888899888776555433 4 9999999999999888743
Q ss_pred ---------------CeEEEEEcCCCCceeEEeeccccceEEEEEcCCCCeEEEEEeCCC---------cEEEEECCCCe
Q 003236 619 ---------------RTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNS---------EIRYWSINNGS 674 (837)
Q Consensus 619 ---------------g~I~IWDl~~~~~~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg---------~I~vwDl~t~~ 674 (837)
..|++||+.+++. +..+.. . .+..++|+|++ +++++..+. .|+++| +++
T Consensus 137 ~~~~~~g~~~~~~~~~~l~~~d~~~~~~-~~~l~~-~-~~~~~~~spdg--~~~~~~~~~~~~~~~~~~~l~~~d--~~~ 209 (347)
T 2gop_A 137 VPAWFDDLGFFDGEKTTFWIFDTESEEV-IEEFEK-P-RFSSGIWHRDK--IVVNVPHREIIPQYFKFWDIYIWE--DGK 209 (347)
T ss_dssp CCCC---------CEEEEEEEETTTTEE-EEEEEE-E-TTCEEEEETTE--EEEEEECCCSSCCSSCCEEEEEEE--TTE
T ss_pred cceeecCcccccCccceEEEEECCCCeE-EeeecC-C-CcccccCCCCe--EEEEEecccccccccccccEEEeC--CCc
Confidence 5799999987653 233443 3 78899999998 555664432 455555 565
Q ss_pred eeeEEecCCCeeEEEEecCCCEEEEEEcC--------CeEEEEECCCCeEEEEEcCCCCCEEE-EEEcCCCCEEEEEe-C
Q 003236 675 CAGVFKCQSGATQMRFQPRLGRILAAAIE--------NYISILDVETQVCRLKLQGHKNQVHS-VCWNTSGEYLASVS-D 744 (837)
Q Consensus 675 ~i~~~~~~~~i~sl~~sp~g~~llags~d--------g~I~iwDl~s~~~~~~l~~h~~~V~s-l~~spdg~~Lasgs-D 744 (837)
....... ..+.. ++|+|+.|++++.+ ..|.+|| +++.......+...+.. +.|+ ++ ++++++ +
T Consensus 210 ~~~l~~~-~~~~~--~spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~~~l~~~~~~~~~~~~~~s-dg-~~~~~~~~ 282 (347)
T 2gop_A 210 EEKMFEK-VSFYA--VDSDGERILLYGKPEKKYMSEHNKLYIYD--GKEVMGILDEVDRGVGQAKIKD-GK-VYFTLFEE 282 (347)
T ss_dssp EEEEEEE-ESEEE--EEECSSCEEEEECCSSSCCCSSCEEEEEC--SSCEEESSTTCCSEEEEEEEET-TE-EEEEEEET
T ss_pred eEEeccC-cceee--ECCCCCEEEEEEccccCCccccceEEEEC--CCceEeccccCCcccCCccEEc-Cc-EEEEEecC
Confidence 5444443 33433 49999998887754 3688888 55555545556778886 9999 88 777777 8
Q ss_pred CeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeE-EEEECCCCcEEEeccCCCC
Q 003236 745 ELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETL-ELWNMTENKTLTLSAHDKL 811 (837)
Q Consensus 745 g~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fspdg~~L~sgs~dg~I-~IwDl~s~~~~~l~~h~~~ 811 (837)
+.++|| +.++ .. ..+..+...|.+++|+| ..+++++.++.. .||.+. ++...+..|...
T Consensus 283 ~~~~l~-~~~g---~~-~~~~~~~~~v~~~~~s~--~~~~~~~~~~~~~~l~~~~-g~~~~lt~~n~~ 342 (347)
T 2gop_A 283 GSVNLY-IWDG---EI-KPIAKGRHWIMGFDVDE--IVVYLKETATRLRELFTWD-GEEKQLTDYNDP 342 (347)
T ss_dssp TEEEEE-EESS---SE-EEEECSSSEEEEEEESS--SEEEEEECSSSCCEEEEES-SSEEECCCTTST
T ss_pred CcEEEE-EcCC---ce-EEEecCCCeEEeeeeeC--cEEEEEcCCCChHHheEeC-CcEEEeccccHh
Confidence 899999 8743 33 33334467899999999 677777777654 666665 666566666543
|
| >1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A* | Back alignment and structure |
|---|
Probab=99.65 E-value=2.9e-13 Score=158.67 Aligned_cols=265 Identities=11% Similarity=0.062 Sum_probs=194.8
Q ss_pred CCCCEEEEEECCCcEEEEeCCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcC--CCCceeEEeeccccc
Q 003236 565 PDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTE--NPDYSLRTFTGHSTT 642 (837)
Q Consensus 565 pdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~--~~~~~~~~~~~h~~~ 642 (837)
+.+.++++...++.|.+||..+++.+.++... ..+..+.|+||++++++++.|+.|.+||+. +.+. +..+.. ...
T Consensus 165 ~~~~~~V~~~~~~~V~viD~~t~~v~~~i~~g-~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~-v~~i~~-G~~ 241 (567)
T 1qks_A 165 LENLFSVTLRDAGQIALIDGSTYEIKTVLDTG-YAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTT-VAEIKI-GSE 241 (567)
T ss_dssp GGGEEEEEETTTTEEEEEETTTCCEEEEEECS-SCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCE-EEEEEC-CSE
T ss_pred CCceEEEEeCCCCeEEEEECCCCeEEEEEeCC-CCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcE-eEEEec-CCC
Confidence 34456677778899999999999999888643 457799999999999999999999999995 5443 444443 234
Q ss_pred eEEEEEc----CCCCeEEEEEeCCCcEEEEECCCCeeeeEEecC------------CCeeEEEEecCCCEEEEEEc-CCe
Q 003236 643 VMSLDFH----PSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ------------SGATQMRFQPRLGRILAAAI-ENY 705 (837)
Q Consensus 643 V~sl~fs----pdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~~------------~~i~sl~~sp~g~~llags~-dg~ 705 (837)
...++|+ |+|++++++...++.|.++|..+.+.+..+... ..+..+..++++..+++... +|.
T Consensus 242 P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~ 321 (567)
T 1qks_A 242 ARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGK 321 (567)
T ss_dssp EEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTE
T ss_pred CceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCe
Confidence 6799999 699999988888899999999999988877642 15677888888776665554 589
Q ss_pred EEEEECCCCeE--EEEEcCCCCCEEEEEEcCCCCEEEEEe--CCeEEEEEcCCCCCceeEEEeec-----CCCceEEEEE
Q 003236 706 ISILDVETQVC--RLKLQGHKNQVHSVCWNTSGEYLASVS--DELVRVWSIGSGSKGECIHELSC-----TGNKFHSCVF 776 (837)
Q Consensus 706 I~iwDl~s~~~--~~~l~~h~~~V~sl~~spdg~~Lasgs--Dg~I~IwDl~s~~~~~~i~~~~~-----~~~~I~sv~f 776 (837)
|.++|..+.+. +..+ .......++.|+|++++|+++. ++.|.++|+.++ +.+..+.. |.+.-.. .+
T Consensus 322 v~~vd~~~~~~~~v~~i-~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~---kl~~~i~vgg~~Phpg~g~~-~~ 396 (567)
T 1qks_A 322 ILLVDYTDLNNLKTTEI-SAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEG---KLVAIEDTGGQTPHPGRGAN-FV 396 (567)
T ss_dssp EEEEETTCSSEEEEEEE-ECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTT---EEEEEEECSSSSBCCTTCEE-EE
T ss_pred EEEEecCCCccceeeee-eccccccCceECCCCCEEEEEeCCCCeEEEEECCCC---cEEEEEeccCcCCCCcccee-eE
Confidence 99999987532 2233 2445678899999999988776 789999999987 44444332 2221222 26
Q ss_pred eCCCCEEEEEE--cCCeEEEEECCC-------CcEE-EeccCCCCeeEEEEeCCCCEEEEEEC-------CCcEEEeC
Q 003236 777 HPTFPSLLVIG--CYETLELWNMTE-------NKTL-TLSAHDKLVSSLAASTVNGMVASASH-------DKCVKIWK 837 (837)
Q Consensus 777 spdg~~L~sgs--~dg~I~IwDl~s-------~~~~-~l~~h~~~V~sla~spdg~~LaSgs~-------DG~I~IWd 837 (837)
+|++..+++.+ .++.|.++|... .+.+ .+......-..+..+|++++|.+... ...|.|+|
T Consensus 397 ~p~~g~v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~~~g~g~~~i~~~p~~~~l~v~~~~~~~~~~~~~v~v~d 474 (567)
T 1qks_A 397 HPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFD 474 (567)
T ss_dssp ETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCSEEEEECTTCSSHHHHTCEEEEE
T ss_pred CCCCCcEEEeCCCCCCeEEEecCCCCCCccccCEEEEEEecCCCCCEEEEeCCCCCeEEEecCCCCCcccCceEEEEE
Confidence 88866666554 457999999987 4555 34433333345778999999888663 34787775
|
| >3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.65 E-value=6.9e-14 Score=149.42 Aligned_cols=239 Identities=9% Similarity=0.069 Sum_probs=172.2
Q ss_pred eEEEEeccCCCCeEEEEEcCCCC-EEEEEeCCCeEEEEEcCCCCceeEEeeccccceEEEEEcCCCCeEEEEEeCCCcEE
Q 003236 588 TVKSTLEEHTQWITDVRFSPSLS-RLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIR 666 (837)
Q Consensus 588 ~~~~~l~~h~~~I~~l~fspdg~-~Latgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~ 666 (837)
..+..+..+.....+++|+|+++ +++++..++.|.+||..++ ...+..+...+.++++++++. ++++...++.|.
T Consensus 18 ~~~~~l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~---~~~~~~~~~~~~~l~~~~dg~-l~v~~~~~~~i~ 93 (296)
T 3e5z_A 18 AEARRLADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ---LSPEMHPSHHQNGHCLNKQGH-LIACSHGLRRLE 93 (296)
T ss_dssp CCCEEEECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC---EEEEESSCSSEEEEEECTTCC-EEEEETTTTEEE
T ss_pred CcEEEEecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC---eEEEECCCCCcceeeECCCCc-EEEEecCCCeEE
Confidence 33445555667789999999998 7788888999999999875 455666778899999999987 555665578999
Q ss_pred EEECCCCeeeeEEec-----CCCeeEEEEecCCCEEEEE----E-------------cCCeEEEEECCCCeEEEEEcCCC
Q 003236 667 YWSINNGSCAGVFKC-----QSGATQMRFQPRLGRILAA----A-------------IENYISILDVETQVCRLKLQGHK 724 (837)
Q Consensus 667 vwDl~t~~~i~~~~~-----~~~i~sl~~sp~g~~llag----s-------------~dg~I~iwDl~s~~~~~~l~~h~ 724 (837)
+||..+++....... ...+..++++++|..+++. + ..+.|..+|.. ++. ..+..+.
T Consensus 94 ~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~-~~~~~~~ 171 (296)
T 3e5z_A 94 RQREPGGEWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTL-SAPIRDR 171 (296)
T ss_dssp EECSTTCCEEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCE-EEEECCC
T ss_pred EEcCCCCcEEEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-CCE-EEeecCC
Confidence 999988876544322 2346679999998877763 2 13467777766 443 3344566
Q ss_pred CCEEEEEEcCCCCEEEEEe-CCeEEEEEcC-CCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcE
Q 003236 725 NQVHSVCWNTSGEYLASVS-DELVRVWSIG-SGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKT 802 (837)
Q Consensus 725 ~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~-s~~~~~~i~~~~~~~~~I~sv~fspdg~~L~sgs~dg~I~IwDl~s~~~ 802 (837)
..+..++|+|++++|++.+ ++.|++|++. ++........+..+...+..++++++|..++ ++ ++.|.+||......
T Consensus 172 ~~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G~l~v-~~-~~~v~~~~~~g~~~ 249 (296)
T 3e5z_A 172 VKPNGLAFLPSGNLLVSDTGDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDAGGLIWA-SA-GDGVHVLTPDGDEL 249 (296)
T ss_dssp SSEEEEEECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBTTSCEEE-EE-TTEEEEECTTSCEE
T ss_pred CCCccEEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECCCCCEEE-Ec-CCeEEEECCCCCEE
Confidence 7789999999999985555 7899999997 3321011222233445567899999998544 44 78999999874333
Q ss_pred EEeccCCCCeeEEEE-eCCCCEEEEEECCCcEEE
Q 003236 803 LTLSAHDKLVSSLAA-STVNGMVASASHDKCVKI 835 (837)
Q Consensus 803 ~~l~~h~~~V~sla~-spdg~~LaSgs~DG~I~I 835 (837)
..+..+.. +++++| .++++.|++++.++.+++
T Consensus 250 ~~~~~~~~-~~~~~f~~~d~~~L~v~t~~~l~~~ 282 (296)
T 3e5z_A 250 GRVLTPQT-TSNLCFGGPEGRTLYMTVSTEFWSI 282 (296)
T ss_dssp EEEECSSC-CCEEEEESTTSCEEEEEETTEEEEE
T ss_pred EEEECCCC-ceeEEEECCCCCEEEEEcCCeEEEE
Confidence 35666666 999999 588999998888875554
|
| >2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} | Back alignment and structure |
|---|
Probab=99.64 E-value=1.1e-12 Score=138.97 Aligned_cols=275 Identities=8% Similarity=-0.025 Sum_probs=193.7
Q ss_pred ecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEE-EeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCC
Q 003236 551 IPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKS-TLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENP 629 (837)
Q Consensus 551 l~~H~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~~~-~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~~ 629 (837)
+......+.+++++++|+++++...++.|.+||.. ++... .+..+...+.++++.+++.++++...++.|.+||.. +
T Consensus 15 ~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g 92 (300)
T 2qc5_A 15 LSIPDSGPYGITSSEDGKVWFTQHKANKISSLDQS-GRIKEFEVPTPDAKVMCLIVSSLGDIWFTENGANKIGKLSKK-G 92 (300)
T ss_dssp CSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-S
T ss_pred cCCCCCCcceeeECCCCCEEEEcCCCCeEEEECCC-CceEEEECCCCCCcceeEEECCCCCEEEEecCCCeEEEECCC-C
Confidence 34456679999999999988877778999999988 55443 233344679999999999877777668899999988 4
Q ss_pred CceeEEeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeeE-Ee-cCCCeeEEEEecCCCEEEEEEcCCeEE
Q 003236 630 DYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGV-FK-CQSGATQMRFQPRLGRILAAAIENYIS 707 (837)
Q Consensus 630 ~~~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~-~~-~~~~i~sl~~sp~g~~llags~dg~I~ 707 (837)
+............+.++++.+++. ++++...++.|..||.. ++.... +. ....+..+++.++++.+++...++.|.
T Consensus 93 ~~~~~~~~~~~~~~~~i~~~~~g~-l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~ 170 (300)
T 2qc5_A 93 GFTEYPLPQPDSGPYGITEGLNGD-IWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPAFITLGSDNALWFTENQNNSIG 170 (300)
T ss_dssp CEEEEECSSTTCCEEEEEECSTTC-EEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEE
T ss_pred CeEEecCCCCCCCCccceECCCCC-EEEEccCCCeEEEECCC-CCEEEccCCCCCCCceeEEECCCCCEEEEecCCCeEE
Confidence 432222232446789999999876 55566557889999988 554432 11 235688999999988555544578999
Q ss_pred EEECCCCeEEE-EEcCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEE
Q 003236 708 ILDVETQVCRL-KLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLV 785 (837)
Q Consensus 708 iwDl~s~~~~~-~l~~h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fspdg~~L~s 785 (837)
+||. +++... ....+...+.++++++++.++++.. .+.|.+||. ++. ............+.++++++++..+++
T Consensus 171 ~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~--~~~~~~~~~~~~~~~i~~d~~g~l~v~ 246 (300)
T 2qc5_A 171 RITN-TGKLEEYPLPTNAAAPVGITSGNDGALWFVEIMGNKIGRITT-TGE--ISEYDIPTPNARPHAITAGKNSEIWFT 246 (300)
T ss_dssp EECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCC--EEEEECSSTTCCEEEEEECSTTCEEEE
T ss_pred EECC-CCcEEEeeCCCCCCCcceEEECCCCCEEEEccCCCEEEEEcC-CCc--EEEEECCCCCCCceEEEECCCCCEEEe
Confidence 9998 444333 2233456789999999998777766 668999998 332 122223334567889999999984444
Q ss_pred EEcCCeEEEEECCCCcEEEe--ccCCCCeeEEEEeCCCCEEEEEECCCcEEEe
Q 003236 786 IGCYETLELWNMTENKTLTL--SAHDKLVSSLAASTVNGMVASASHDKCVKIW 836 (837)
Q Consensus 786 gs~dg~I~IwDl~s~~~~~l--~~h~~~V~sla~spdg~~LaSgs~DG~I~IW 836 (837)
...++.|.+||. +++...+ ......+.+++++++|.++++.. . .|..+
T Consensus 247 ~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~-~-~i~~~ 296 (300)
T 2qc5_A 247 EWGANQIGRITN-DNTIQEYQLQTENAEPHGITFGKDGSVWFALK-C-KIGKL 296 (300)
T ss_dssp ETTTTEEEEECT-TSCEEEEECCSTTCCCCCEEECTTSCEEEECS-S-EEEEE
T ss_pred ccCCCeEEEECC-CCcEEEEECCccCCccceeEeCCCCCEEEEcc-C-ceEEe
Confidence 445689999998 4554433 33456789999999998766654 4 55544
|
| >3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis} | Back alignment and structure |
|---|
Probab=99.63 E-value=1.1e-13 Score=151.17 Aligned_cols=253 Identities=8% Similarity=-0.020 Sum_probs=182.6
Q ss_pred CeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeEEe
Q 003236 557 KVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTF 636 (837)
Q Consensus 557 ~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~~~~~~~~~ 636 (837)
....+++. +++++++...++.|.+||..+++.+.++. .......++++++++.+++...++.|.+||..+.+. ...+
T Consensus 45 ~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~~~~~~i~-~~~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t~~~-~~~i 121 (328)
T 3dsm_A 45 VAQSMVIR-DGIGWIVVNNSHVIFAIDINTFKEVGRIT-GFTSPRYIHFLSDEKAYVTQIWDYRIFIINPKTYEI-TGYI 121 (328)
T ss_dssp CEEEEEEE-TTEEEEEEGGGTEEEEEETTTCCEEEEEE-CCSSEEEEEEEETTEEEEEEBSCSEEEEEETTTTEE-EEEE
T ss_pred cceEEEEE-CCEEEEEEcCCCEEEEEECcccEEEEEcC-CCCCCcEEEEeCCCeEEEEECCCCeEEEEECCCCeE-EEEE
Confidence 35677774 44556666667999999999999988885 446789999998885444444899999999998654 3333
Q ss_pred eccc-----cceEEEEEcCCCCeEEEEEe-CCCcEEEEECCCCeeeeEEecCCCeeEEEEecCCCEEEEEEcC-------
Q 003236 637 TGHS-----TTVMSLDFHPSKEDLLCSCD-NNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIE------- 703 (837)
Q Consensus 637 ~~h~-----~~V~sl~fspdg~~llasgs-~Dg~I~vwDl~t~~~i~~~~~~~~i~sl~~sp~g~~llags~d------- 703 (837)
.... .....+++ ++..++++.. .++.|.+||+.+++.+..+........+.++++++.++++..+
T Consensus 122 ~~g~~~~~~~~p~~i~~--~~~~lyv~~~~~~~~v~viD~~t~~~~~~i~~g~~p~~i~~~~dG~l~v~~~~~~~~~~~~ 199 (328)
T 3dsm_A 122 ECPDMDMESGSTEQMVQ--YGKYVYVNCWSYQNRILKIDTETDKVVDELTIGIQPTSLVMDKYNKMWTITDGGYEGSPYG 199 (328)
T ss_dssp ECTTCCTTTCBCCCEEE--ETTEEEEEECTTCCEEEEEETTTTEEEEEEECSSCBCCCEECTTSEEEEEBCCBCTTCSSC
T ss_pred EcCCccccCCCcceEEE--ECCEEEEEcCCCCCEEEEEECCCCeEEEEEEcCCCccceEEcCCCCEEEEECCCccCCccc
Confidence 3222 14567777 4566666654 4889999999999999888877778889999998766555544
Q ss_pred ---CeEEEEECCCCeEEEEEcCC-CCCEEEEEEcCCCCEEEEEeCCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCC
Q 003236 704 ---NYISILDVETQVCRLKLQGH-KNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPT 779 (837)
Q Consensus 704 ---g~I~iwDl~s~~~~~~l~~h-~~~V~sl~~spdg~~LasgsDg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fspd 779 (837)
+.|.+||..+++....+... ...+..++|+|++++|+++.. .|.+||..++.... ...+.........++++|+
T Consensus 200 ~~~~~v~~id~~t~~v~~~~~~~~g~~p~~la~~~d~~~lyv~~~-~v~~~d~~t~~~~~-~~~~~~~~~~p~gi~vdp~ 277 (328)
T 3dsm_A 200 YEAPSLYRIDAETFTVEKQFKFKLGDWPSEVQLNGTRDTLYWINN-DIWRMPVEADRVPV-RPFLEFRDTKYYGLTVNPN 277 (328)
T ss_dssp BCCCEEEEEETTTTEEEEEEECCTTCCCEEEEECTTSCEEEEESS-SEEEEETTCSSCCS-SCSBCCCSSCEEEEEECTT
T ss_pred cCCceEEEEECCCCeEEEEEecCCCCCceeEEEecCCCEEEEEcc-EEEEEECCCCceee-eeeecCCCCceEEEEEcCC
Confidence 78999999999887776532 346899999999998887655 89999998764211 1111212466889999996
Q ss_pred CCEEEEEE-----cCCeEEEEECCCCcEEEeccCCCCeeEEEE
Q 003236 780 FPSLLVIG-----CYETLELWNMTENKTLTLSAHDKLVSSLAA 817 (837)
Q Consensus 780 g~~L~sgs-----~dg~I~IwDl~s~~~~~l~~h~~~V~sla~ 817 (837)
+..|+++. .++.|.+||.. ++.+....-......++|
T Consensus 278 ~g~lyva~~~~y~~~~~V~v~d~~-g~~~~~i~~G~~P~~~~~ 319 (328)
T 3dsm_A 278 NGEVYVADAIDYQQQGIVYRYSPQ-GKLIDEFYVGIIPGAFCW 319 (328)
T ss_dssp TCCEEEEECTTSSSEEEEEEECTT-CCEEEEEEEEESEEEEEE
T ss_pred CCeEEEEcccccccCCEEEEECCC-CCEEEEEEeccCcceEEE
Confidence 65666665 56799999998 776633333444556665
|
| >2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=99.63 E-value=6.1e-15 Score=177.63 Aligned_cols=247 Identities=10% Similarity=-0.004 Sum_probs=171.5
Q ss_pred CCCCCeEEEEEcCCCCEEEEE-----ECCCcEEEEeCCCCeEEEEeccCCCCe--EEEEEcCCCCEEEEEeCCCe-----
Q 003236 553 ASTSKVESCHFSPDGKLLATG-----GHDKKAVLWCTESFTVKSTLEEHTQWI--TDVRFSPSLSRLATSSADRT----- 620 (837)
Q Consensus 553 ~H~~~V~sl~fSpdg~~Lasg-----s~Dg~I~VWd~~t~~~~~~l~~h~~~I--~~l~fspdg~~Latgs~Dg~----- 620 (837)
+|...+.+++|||||++||.+ +.+..|++||+.+++.+. ..+...+ ..++|+|||+.|+.++.|..
T Consensus 118 ~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~--~~~~~~~~~~~~~wspDg~~l~~~~~d~~~~~~~ 195 (695)
T 2bkl_A 118 DGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSK--VDVIEGGKYATPKWTPDSKGFYYEWLPTDPSIKV 195 (695)
T ss_dssp SSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCS--SCCBSCCTTCCCEECTTSSEEEEEECCCCTTSCG
T ss_pred CCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcC--CcccCcccccceEEecCCCEEEEEEecCCCCCcc
Confidence 455568999999999999844 345689999999987641 1122223 68999999999999998876
Q ss_pred --------EEEEEcCCCCc---eeEEeeccccceEEEEEcCCCCeEEEEEeCC-C--cEEEEECCCCeeeeEEecCCCee
Q 003236 621 --------VRVWDTENPDY---SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN-S--EIRYWSINNGSCAGVFKCQSGAT 686 (837)
Q Consensus 621 --------I~IWDl~~~~~---~~~~~~~h~~~V~sl~fspdg~~llasgs~D-g--~I~vwDl~t~~~i~~~~~~~~i~ 686 (837)
|++|++.++.. .+.....|...+.++.|+|+|..++++...+ + .|++||..++...........+.
T Consensus 196 ~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~ 275 (695)
T 2bkl_A 196 DERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKDFRLLVKGVGAKY 275 (695)
T ss_dssp GGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCSSCEEEEECSSCCE
T ss_pred ccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCceEEeecCCCceE
Confidence 99999987653 2223334556789999999998887666543 2 67777776666555555555566
Q ss_pred EEEEecCCCEEEEEEc----CCeEEEEECCCCeE---EEEEcCC-CCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCC
Q 003236 687 QMRFQPRLGRILAAAI----ENYISILDVETQVC---RLKLQGH-KNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSK 757 (837)
Q Consensus 687 sl~~sp~g~~llags~----dg~I~iwDl~s~~~---~~~l~~h-~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~ 757 (837)
...+ ++++ +++.+. ++.|.+||+.++.. ...+..+ ...|..++|+ ++.++++.. |+..+||.+....
T Consensus 276 ~~~~-~~g~-l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g- 351 (695)
T 2bkl_A 276 EVHA-WKDR-FYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV-GGHLSLEYLKDATSEVRVATLKG- 351 (695)
T ss_dssp EEEE-ETTE-EEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE-TTEEEEEEEETTEEEEEEEETTC-
T ss_pred EEEe-cCCc-EEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCC-
Confidence 6666 5666 655554 47899999987642 3333333 4568888998 666777766 8887777665211
Q ss_pred ceeEEEeecC-CCceEEEEEeCCCCEEEEEEc----CCeEEEEECCCCcEEEec
Q 003236 758 GECIHELSCT-GNKFHSCVFHPTFPSLLVIGC----YETLELWNMTENKTLTLS 806 (837)
Q Consensus 758 ~~~i~~~~~~-~~~I~sv~fspdg~~L~sgs~----dg~I~IwDl~s~~~~~l~ 806 (837)
.....+..+ ...+..++++|++..|++... .+.|++||+.+++...+.
T Consensus 352 -~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~g~~~~l~ 404 (695)
T 2bkl_A 352 -KPVRTVQLPGVGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSVSTGKSELWA 404 (695)
T ss_dssp -CEEEECCCSSSSEECCCBSCTTCSEEEEEEEETTEEEEEEEEETTTCCEEEEE
T ss_pred -CeeEEecCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCcEEEEe
Confidence 344455444 556777889999987775543 358999999988765443
|
| >3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=99.63 E-value=6.4e-15 Score=162.82 Aligned_cols=248 Identities=8% Similarity=0.029 Sum_probs=170.6
Q ss_pred EEEeCCCCeEEEEeccCCCC-----eEEEEEcCCCCEEEEEeCC---CeEEEEEcCCCCceeEEeeccccc-eEEEEEcC
Q 003236 580 VLWCTESFTVKSTLEEHTQW-----ITDVRFSPSLSRLATSSAD---RTVRVWDTENPDYSLRTFTGHSTT-VMSLDFHP 650 (837)
Q Consensus 580 ~VWd~~t~~~~~~l~~h~~~-----I~~l~fspdg~~Latgs~D---g~I~IWDl~~~~~~~~~~~~h~~~-V~sl~fsp 650 (837)
..+|..++..+..+..+... +.+++|+|||++|+.+..+ ..|.+||+.+++ ...+..+... +..+.|+|
T Consensus 13 ~~~d~~~g~~~~~l~~~~~~~~~~~~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~--~~~l~~~~~~~~~~~~~sp 90 (396)
T 3c5m_A 13 TFVDSDTQVKVTRLTPTDIICHRNYFYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQ--AVQLTEGKGDNTFGGFIST 90 (396)
T ss_dssp EEECTTTCCEEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTE--EEECCCSSCBCTTTCEECT
T ss_pred eeecCCCCcceEEEecCCCCccceeeecCcCCCCCCEEEEEEecCCCceEEEEECCCCc--EEEeecCCCCccccceECC
Confidence 34577888877777655443 7889999999998877553 478888988754 2333333333 33488999
Q ss_pred CCCeEEEEEeCCCcEEEEECCCCeeeeEEecCCCe-eE-------------------EEEecCCCEEEEE-----EcCCe
Q 003236 651 SKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGA-TQ-------------------MRFQPRLGRILAA-----AIENY 705 (837)
Q Consensus 651 dg~~llasgs~Dg~I~vwDl~t~~~i~~~~~~~~i-~s-------------------l~~sp~g~~llag-----s~dg~ 705 (837)
++..++ .++.++.|++||+.+++........... .. +.|+|+++.++++ ..+..
T Consensus 91 dg~~l~-~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~ 169 (396)
T 3c5m_A 91 DERAFF-YVKNELNLMKVDLETLEEQVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCR 169 (396)
T ss_dssp TSSEEE-EEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEE
T ss_pred CCCEEE-EEEcCCcEEEEECCCCCcEEEEecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcce
Confidence 988655 5555778999999988876666543331 11 2456666655543 34568
Q ss_pred EEEEECCCCeEEEEEcCCCCCEEEEEEcC-CCCEEEEEe-C------CeEEEEEcCCCCCceeEEEeecC--CCceEEEE
Q 003236 706 ISILDVETQVCRLKLQGHKNQVHSVCWNT-SGEYLASVS-D------ELVRVWSIGSGSKGECIHELSCT--GNKFHSCV 775 (837)
Q Consensus 706 I~iwDl~s~~~~~~l~~h~~~V~sl~~sp-dg~~Lasgs-D------g~I~IwDl~s~~~~~~i~~~~~~--~~~I~sv~ 775 (837)
|++||+.+++..... .+...+..+.|+| ++..|+.++ + ..|.+||+..+. ...+..+ ...+..++
T Consensus 170 l~~~d~~~g~~~~~~-~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~----~~~l~~~~~~~~~~~~~ 244 (396)
T 3c5m_A 170 LIKVDIETGELEVIH-QDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSN----VRKIKEHAEGESCTHEF 244 (396)
T ss_dssp EEEEETTTCCEEEEE-EESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCC----CEESSCCCTTEEEEEEE
T ss_pred EEEEECCCCcEEeec-cCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCc----eeEeeccCCCccccceE
Confidence 999999988765544 4667899999999 788776665 2 368888886542 1222222 23578899
Q ss_pred EeCCCCEEEEEEcC-----CeEEEEECCCCcEEEeccCCCCeeEEEEeC-CCCEEEEEE----------------CCCcE
Q 003236 776 FHPTFPSLLVIGCY-----ETLELWNMTENKTLTLSAHDKLVSSLAAST-VNGMVASAS----------------HDKCV 833 (837)
Q Consensus 776 fspdg~~L~sgs~d-----g~I~IwDl~s~~~~~l~~h~~~V~sla~sp-dg~~LaSgs----------------~DG~I 833 (837)
|+|+|++|++++.+ +.|++||+.+++...+..... +. +.|+| ||++|++++ .++.|
T Consensus 245 ~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~-~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i 322 (396)
T 3c5m_A 245 WIPDGSAMAYVSYFKGQTDRVIYKANPETLENEEVMVMPP-CS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFL 322 (396)
T ss_dssp ECTTSSCEEEEEEETTTCCEEEEEECTTTCCEEEEEECCS-EE-EEEECSSSSEEEEEECCC----------CCCCCCEE
T ss_pred ECCCCCEEEEEecCCCCccceEEEEECCCCCeEEeeeCCC-CC-CCccCCCCceEEEecCCcceeeccccccccCCCCcE
Confidence 99999988877654 349999999887664433222 33 89999 999888765 24678
Q ss_pred EEeC
Q 003236 834 KIWK 837 (837)
Q Consensus 834 ~IWd 837 (837)
++||
T Consensus 323 ~~~d 326 (396)
T 3c5m_A 323 YVLN 326 (396)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 8885
|
| >3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ... | Back alignment and structure |
|---|
Probab=99.61 E-value=1.3e-13 Score=152.93 Aligned_cols=271 Identities=10% Similarity=0.069 Sum_probs=193.7
Q ss_pred EEEcCCCCEEEEEEC-----CCcEEEEeCCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEe----------CCCeEEEEE
Q 003236 561 CHFSPDGKLLATGGH-----DKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSS----------ADRTVRVWD 625 (837)
Q Consensus 561 l~fSpdg~~Lasgs~-----Dg~I~VWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs----------~Dg~I~IWD 625 (837)
....|+++.+++... ++.|.++|..+++.+.++.....+ . ++++||+++|++++ .++.|.+||
T Consensus 38 ~~~~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I~vG~~P-~-va~spDG~~lyVan~~~~r~~~G~~~~~VsviD 115 (386)
T 3sjl_D 38 EAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLP-N-PVVADDGSFIAHASTVFSRIARGERTDYVEVFD 115 (386)
T ss_dssp CCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSSC-E-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEEC
T ss_pred eccCCCCCEEEEEcCcccCCCCEEEEEECCCCeEEEEEECCCCC-c-EEECCCCCEEEEEcccccccccCCCCCEEEEEE
Confidence 445789998888765 679999999999999998765555 4 99999999998876 367899999
Q ss_pred cCCCCceeEEee-cc------ccceEEEEEcCCCCeEEEEEeC-CCcEEEEECCCCeeeeEEecCCCeeEEEEecCCCEE
Q 003236 626 TENPDYSLRTFT-GH------STTVMSLDFHPSKEDLLCSCDN-NSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRI 697 (837)
Q Consensus 626 l~~~~~~~~~~~-~h------~~~V~sl~fspdg~~llasgs~-Dg~I~vwDl~t~~~i~~~~~~~~i~sl~~sp~g~~l 697 (837)
..+.+. +..+. +. ......+.|+|||++++++... ++.|.++|+.+++.+..+...+. ...+......+
T Consensus 116 ~~t~~v-~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~g~--~~~~P~g~~~~ 192 (386)
T 3sjl_D 116 PVTLLP-TADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDC--YHIFPTAPDTF 192 (386)
T ss_dssp TTTCCE-EEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSE--EEEEEEETTEE
T ss_pred CCCCeE-EEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECCCc--ceeecCCCcee
Confidence 998764 44332 21 1246679999999988877643 78999999999999999876442 22333345677
Q ss_pred EEEEcCCeEEEEECCC-CeEEEEEcCC----CCCEE-EEEEc-CCCCEEEEEeCCeEEEEEcCCCCCceeEEEee---c-
Q 003236 698 LAAAIENYISILDVET-QVCRLKLQGH----KNQVH-SVCWN-TSGEYLASVSDELVRVWSIGSGSKGECIHELS---C- 766 (837)
Q Consensus 698 lags~dg~I~iwDl~s-~~~~~~l~~h----~~~V~-sl~~s-pdg~~LasgsDg~I~IwDl~s~~~~~~i~~~~---~- 766 (837)
++.+.||.+.++++.+ ++.......+ ...+. ...|. ++|++++++.++.|+++|+.+... ..+..+. .
T Consensus 193 ~~~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~vs~~g~V~v~d~~~~~~-~v~~~~~~~~~~ 271 (386)
T 3sjl_D 193 FMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDA-KFLPAVEALTEA 271 (386)
T ss_dssp EEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEEEBTTSEEEEEECTTSSC-EECCCEESSCHH
T ss_pred EEECCCCCEEEEECCCCCeEEEeecceeccccccccccceeEcCCCcEEEEeCCCEEEEEECCCCcc-eeecceeccccc
Confidence 8889999999999986 5543322111 12222 24564 688777766689999999976532 2222221 0
Q ss_pred ------CCCceEEEEEeCCCCEEEEEEc----------CCeEEEEECCCCcEEEeccCCCCeeEEEEeCCCC-EEEEEE-
Q 003236 767 ------TGNKFHSCVFHPTFPSLLVIGC----------YETLELWNMTENKTLTLSAHDKLVSSLAASTVNG-MVASAS- 828 (837)
Q Consensus 767 ------~~~~I~sv~fspdg~~L~sgs~----------dg~I~IwDl~s~~~~~l~~h~~~V~sla~spdg~-~LaSgs- 828 (837)
....+..++++++++.+++... .+.|.++|+.+++.+....-...++.|++++|++ +|+++.
T Consensus 272 ~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~vg~~~~~lavs~D~~~~ly~tn~ 351 (386)
T 3sjl_D 272 ERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMGHEIDSINVSQDEKPLLYALST 351 (386)
T ss_dssp HHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEEEECEEEECSSSSCEEEEEET
T ss_pred cccccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCCeEEEEEECCCCcceEEECCCCCeEEEEEcC
Confidence 0122335778999999998764 2479999999999985544445789999999997 666654
Q ss_pred CCCcEEEeC
Q 003236 829 HDKCVKIWK 837 (837)
Q Consensus 829 ~DG~I~IWd 837 (837)
.++.|.|+|
T Consensus 352 ~~~~VsViD 360 (386)
T 3sjl_D 352 GDKTLYIHD 360 (386)
T ss_dssp TTTEEEEEE
T ss_pred CCCeEEEEE
Confidence 588999886
|
| >1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A | Back alignment and structure |
|---|
Probab=99.61 E-value=1.2e-13 Score=144.75 Aligned_cols=238 Identities=8% Similarity=-0.042 Sum_probs=168.5
Q ss_pred CeEEEEEcCCCCEEE-EEECCCcEEEEeCCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeEE
Q 003236 557 KVESCHFSPDGKLLA-TGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRT 635 (837)
Q Consensus 557 ~V~sl~fSpdg~~La-sgs~Dg~I~VWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~~~~~~~~ 635 (837)
...+++++++|++++ +.+.++.|.+||..+.........+...+.+++++++++++++.. ++.|.+||...... ..
T Consensus 25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~-~~~i~~~d~~~~~~--~~ 101 (270)
T 1rwi_B 25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGTVYVTDF-NNRVVTLAAGSNNQ--TV 101 (270)
T ss_dssp CEEEEEECTTCCEEEEECSSSCEEEEECC-----EECCCCSCCSCCCEEECTTCCEEEEET-TTEEEEECTTCSCC--EE
T ss_pred CccceEECCCCCEEEEccCCCCcEEEecCCCcccceEeeCCcCCcceeEECCCCCEEEEcC-CCEEEEEeCCCceE--ee
Confidence 578999999999777 446788999999766544333233445788999999998666555 88999999876443 22
Q ss_pred ee-ccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeeEEe-cCCCeeEEEEecCCCEEEEEEcCCeEEEEECCC
Q 003236 636 FT-GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK-CQSGATQMRFQPRLGRILAAAIENYISILDVET 713 (837)
Q Consensus 636 ~~-~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~-~~~~i~sl~~sp~g~~llags~dg~I~iwDl~s 713 (837)
+. .....+.++++++++. ++++...++.|.+|+..+........ ....+..+++++++..+++...++.|.+||...
T Consensus 102 ~~~~~~~~p~~i~~~~~g~-l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~ 180 (270)
T 1rwi_B 102 LPFDGLNYPEGLAVDTQGA-VYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAES 180 (270)
T ss_dssp CCCCSCSSEEEEEECTTCC-EEEEEGGGTEEEEECTTCCSCEECCCCSCCSCCCEEECTTCCEEEEEGGGTEEEEECTTT
T ss_pred eecCCcCCCcceEECCCCC-EEEEECCCCEEEEEECCCceeEeeccccCCCceeEEEeCCCCEEEEECCCCEEEEEecCC
Confidence 22 2335789999999876 66666668899999876554332221 124578899999988555555678999999987
Q ss_pred CeEEEEEcCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeE
Q 003236 714 QVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETL 792 (837)
Q Consensus 714 ~~~~~~l~~h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fspdg~~L~sgs~dg~I 792 (837)
.........+...+.+|+++++|.++++.. ++.|.+||..... .......+...+..++++++|..+++...++.|
T Consensus 181 ~~~~~~~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~---~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~v 257 (270)
T 1rwi_B 181 NNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTT---STVLPFTGLNTPLAVAVDSDRTVYVADRGNDRV 257 (270)
T ss_dssp CCEEECCCSSCCSEEEEEECTTCCEEEEETTTSCEEEECTTCSC---CEECCCCSCSCEEEEEECTTCCEEEEEGGGTEE
T ss_pred CceEeecccCCCCceEEEECCCCCEEEEECCCCcEEEEcCCCCc---ceeeccCCCCCceeEEECCCCCEEEEECCCCEE
Confidence 765544333446789999999997777766 7899999986642 222222233568999999999877777778899
Q ss_pred EEEECCCCc
Q 003236 793 ELWNMTENK 801 (837)
Q Consensus 793 ~IwDl~s~~ 801 (837)
++|++...+
T Consensus 258 ~~~~~~~~~ 266 (270)
T 1rwi_B 258 VKLTSLEHH 266 (270)
T ss_dssp EEECCCGGG
T ss_pred EEEcCCCcc
Confidence 999987654
|
| >2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H* | Back alignment and structure |
|---|
Probab=99.60 E-value=2.2e-12 Score=143.58 Aligned_cols=266 Identities=9% Similarity=0.001 Sum_probs=185.2
Q ss_pred EcCCCCEEEEEEC--CC---cEEEEeCCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEe----------CCCeEEEEEcC
Q 003236 563 FSPDGKLLATGGH--DK---KAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSS----------ADRTVRVWDTE 627 (837)
Q Consensus 563 fSpdg~~Lasgs~--Dg---~I~VWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs----------~Dg~I~IWDl~ 627 (837)
..|+++++++... .. +|.+||..+++.+..+.....+ .++|+||+++|+++. .++.|.+||..
T Consensus 28 ~~~~~~~~yv~~~~~~~~~~~v~v~D~~t~~~~~~i~~g~~p--~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~ 105 (373)
T 2mad_H 28 PGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPV 105 (373)
T ss_pred CCCCCCEEEEeCCcccCCccEEEEEECCCCeEEEEecCCCCC--CeEECCCCCEEEEEeccccccccCCCCCeEEEEECC
Confidence 3467777666643 22 8899999999999888755444 999999999999886 36789999998
Q ss_pred CCCceeEEeecc-------ccceEEEEEcCCCCeEEEEEeC-CCcEEEEECCCCeeeeE-EecCCCeeEEEEecCC-CEE
Q 003236 628 NPDYSLRTFTGH-------STTVMSLDFHPSKEDLLCSCDN-NSEIRYWSINNGSCAGV-FKCQSGATQMRFQPRL-GRI 697 (837)
Q Consensus 628 ~~~~~~~~~~~h-------~~~V~sl~fspdg~~llasgs~-Dg~I~vwDl~t~~~i~~-~~~~~~i~sl~~sp~g-~~l 697 (837)
+.+. +..+.-. ......+.|+|+|++++++... ++.|.++| .+++.+.. +..... +.+.+++ ..+
T Consensus 106 t~~~-~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~~~~---~~~~~~~~~~~ 180 (373)
T 2mad_H 106 TFLP-IADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVV-QGGSSDDQLLSSPTC---YHIHPGAPSTF 180 (373)
T ss_pred CCcE-EEEEECCCccccccCCCccceEECCCCCEEEEEecCCCCeEEEEE-CCCCEEeEEcCCCce---EEEEeCCCceE
Confidence 7654 3333211 1235589999999988876644 58899999 99998877 655433 4455655 345
Q ss_pred EEEEcCCeEEEEECCCCeEEEEEc-----CCCCCE-EEEEEcCCCCEEEEE-eCCeEEEEEcCCCCCceeEEEeec----
Q 003236 698 LAAAIENYISILDVETQVCRLKLQ-----GHKNQV-HSVCWNTSGEYLASV-SDELVRVWSIGSGSKGECIHELSC---- 766 (837)
Q Consensus 698 lags~dg~I~iwDl~s~~~~~~l~-----~h~~~V-~sl~~spdg~~Lasg-sDg~I~IwDl~s~~~~~~i~~~~~---- 766 (837)
++.+.||.+.++|. +++.+.... ....++ ....+.+++..++.. .++.|.+.|+..... ..+..+..
T Consensus 181 ~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~-~v~~~~~~~~~~ 258 (373)
T 2mad_H 181 YLLCAQGGLAKTDH-AGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGA-TNKAPIDALSGG 258 (373)
T ss_pred EEEcCCCCEEEEEC-CCcEEEEEeccccccCCcceeecceeEecCCEEEEEcCCceEEEEeccCCcc-eEeeeeeecCCc
Confidence 66778999999999 776653322 111222 234566665544443 478999999975421 22222211
Q ss_pred ------CCCceEEEEEeCCCCEEEEEEc----------CCeEEEEECCCCcEEEeccCCCCeeEEEEeCCCC-EEEEEE-
Q 003236 767 ------TGNKFHSCVFHPTFPSLLVIGC----------YETLELWNMTENKTLTLSAHDKLVSSLAASTVNG-MVASAS- 828 (837)
Q Consensus 767 ------~~~~I~sv~fspdg~~L~sgs~----------dg~I~IwDl~s~~~~~l~~h~~~V~sla~spdg~-~LaSgs- 828 (837)
.......++++++++.++++.. .+.|.++|+.+++.+..........+++|+|||+ +++++.
T Consensus 259 ~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~~g~~p~~i~~s~Dg~~~l~v~~~ 338 (373)
T 2mad_H 259 RKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISLGHDVDAISVAQDGGPDLYALSA 338 (373)
T ss_pred ccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCCEEEEEEECCCCcCeEEECCCCCeEEEEEcC
Confidence 1122445789999998888764 3579999999999875444555789999999999 788877
Q ss_pred CCCcEEEeC
Q 003236 829 HDKCVKIWK 837 (837)
Q Consensus 829 ~DG~I~IWd 837 (837)
.++.|.|||
T Consensus 339 ~~~~V~ViD 347 (373)
T 2mad_H 339 GTEVLHIYD 347 (373)
T ss_pred CCCeEEEEE
Confidence 589999986
|
| >2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A* | Back alignment and structure |
|---|
Probab=99.60 E-value=2.2e-13 Score=164.38 Aligned_cols=268 Identities=8% Similarity=-0.009 Sum_probs=183.0
Q ss_pred CCCCEEEEEECCC-----cEEEEeCCCCeEEEEe------ccCCCCeEEEEEcCCCCEEEEEeCCC-----eEEEEEcCC
Q 003236 565 PDGKLLATGGHDK-----KAVLWCTESFTVKSTL------EEHTQWITDVRFSPSLSRLATSSADR-----TVRVWDTEN 628 (837)
Q Consensus 565 pdg~~Lasgs~Dg-----~I~VWd~~t~~~~~~l------~~h~~~I~~l~fspdg~~Latgs~Dg-----~I~IWDl~~ 628 (837)
|||++++....++ .|++.+...++....+ .+|...+..++|+|||++|+.++.++ .|++||+.+
T Consensus 81 ~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~t 160 (710)
T 2xdw_A 81 KKGKRYFYFYNTGLQNQRVLYVQDSLEGEARVFLDPNILSDDGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDG 160 (710)
T ss_dssp EETTEEEEEEECSSCSSCEEEEESSTTSCCEEEECGGGGCTTSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTT
T ss_pred EECCEEEEEEEcCCceEEEEEEEcCCCCCcEEEECHHHhccCCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCC
Confidence 8899877665332 3455555444433222 13445688999999999998876643 899999998
Q ss_pred CCceeEEeeccccceEEEEEcCCCCeEEEEEeCCCc----------------EEEEECCCCeee--eEEec---CCCeeE
Q 003236 629 PDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSE----------------IRYWSINNGSCA--GVFKC---QSGATQ 687 (837)
Q Consensus 629 ~~~~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~----------------I~vwDl~t~~~i--~~~~~---~~~i~s 687 (837)
++.....+. ...+.+++|+||++.++++.. ++. |++|++.++... ..+.. ...+..
T Consensus 161 g~~~~~~~~--~~~~~~~~wspDg~~l~~~~~-~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~ 237 (710)
T 2xdw_A 161 AKELPDVLE--RVKFSCMAWTHDGKGMFYNAY-PQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGG 237 (710)
T ss_dssp TEEEEEEEE--EECSCCEEECTTSSEEEEEEC-CCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEE
T ss_pred CCCCccccc--CcccceEEEEeCCCEEEEEEE-CCccccccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEE
Confidence 764322222 223778999999987776654 433 999999887632 22222 234678
Q ss_pred EEEecCCCEEEEEEc-----CCeEEEEECCC------Ce-EEEEEcCCCCCEEEEEEcCCCCEEEEEe--CC---eEEEE
Q 003236 688 MRFQPRLGRILAAAI-----ENYISILDVET------QV-CRLKLQGHKNQVHSVCWNTSGEYLASVS--DE---LVRVW 750 (837)
Q Consensus 688 l~~sp~g~~llags~-----dg~I~iwDl~s------~~-~~~~l~~h~~~V~sl~~spdg~~Lasgs--Dg---~I~Iw 750 (837)
+.|+|++++|+.++. +..|++||+.+ +. ....+..+...+.. .|+++|..|+..+ ++ .|.+|
T Consensus 238 ~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~ 316 (710)
T 2xdw_A 238 AELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLIDNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINI 316 (710)
T ss_dssp EEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEECSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEE
T ss_pred EEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccceEEeeCCCCcEEE-EEeccCCEEEEEECCCCCCCEEEEE
Confidence 999999999988876 56899999986 42 34555666666655 4888998777665 22 69999
Q ss_pred EcCCCCCceeEEEeecCC--CceEEEEEeCCCCEEEEEEcCC--eEEEEECCCCcEE-EeccCCCCeeEEEEeCCCCEEE
Q 003236 751 SIGSGSKGECIHELSCTG--NKFHSCVFHPTFPSLLVIGCYE--TLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVA 825 (837)
Q Consensus 751 Dl~s~~~~~~i~~~~~~~--~~I~sv~fspdg~~L~sgs~dg--~I~IwDl~s~~~~-~l~~h~~~V~sla~spdg~~La 825 (837)
|+.++... ....+..+. ..+..++|++++..+++...++ .|++||+.+++.+ .+..+.+.|..++++|++..|+
T Consensus 317 d~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~lv~~~~~~g~~~l~~~~~~~g~~~~~l~~~~~~v~~~~~s~d~~~l~ 395 (710)
T 2xdw_A 317 DFTDPEES-KWKVLVPEHEKDVLEWVACVRSNFLVLCYLHDVKNTLQLHDLATGALLKIFPLEVGSVVGYSGQKKDTEIF 395 (710)
T ss_dssp ETTSCCGG-GCEEEECCCSSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTTCCEEEEECCCSSEEEEEECCTTCSEEE
T ss_pred eCCCCCcc-cceeccCCCCCCeEEEEEEEcCCEEEEEEEECCEEEEEEEECCCCCEEEecCCCCceEEEEecCCCCCEEE
Confidence 99876321 123333333 3678899997777777777787 5777888677654 5666777889999999987655
Q ss_pred EE-E---CCCcEEEeC
Q 003236 826 SA-S---HDKCVKIWK 837 (837)
Q Consensus 826 Sg-s---~DG~I~IWd 837 (837)
.. + ..+.|++||
T Consensus 396 ~~~ss~~~P~~i~~~d 411 (710)
T 2xdw_A 396 YQFTSFLSPGIIYHCD 411 (710)
T ss_dssp EEEECSSCCCEEEEEE
T ss_pred EEEeCCCCCCEEEEEE
Confidence 33 2 246787775
|
| >1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A | Back alignment and structure |
|---|
Probab=99.59 E-value=2e-13 Score=143.03 Aligned_cols=233 Identities=7% Similarity=-0.085 Sum_probs=165.2
Q ss_pred CeEEEEEcCCCCEEE-EEeCCCeEEEEEcCCCCceeEEeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeee
Q 003236 599 WITDVRFSPSLSRLA-TSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAG 677 (837)
Q Consensus 599 ~I~~l~fspdg~~La-tgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~ 677 (837)
...++++++++++++ +.+.++.|.+||..+... ......+...+.++++++++. ++++.. ++.|.+||........
T Consensus 25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~-~~~~~~~~~~p~~i~~~~~g~-l~v~~~-~~~i~~~d~~~~~~~~ 101 (270)
T 1rwi_B 25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGT-TVLPFNGLYQPQGLAVDGAGT-VYVTDF-NNRVVTLAAGSNNQTV 101 (270)
T ss_dssp CEEEEEECTTCCEEEEECSSSCEEEEECC------EECCCCSCCSCCCEEECTTCC-EEEEET-TTEEEEECTTCSCCEE
T ss_pred CccceEECCCCCEEEEccCCCCcEEEecCCCccc-ceEeeCCcCCcceeEECCCCC-EEEEcC-CCEEEEEeCCCceEee
Confidence 688999999998776 446789999999865442 111123335688999999877 555555 8899999987654332
Q ss_pred EE-ecCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCC
Q 003236 678 VF-KCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSG 755 (837)
Q Consensus 678 ~~-~~~~~i~sl~~sp~g~~llags~dg~I~iwDl~s~~~~~~l~~h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~ 755 (837)
.. .....+..+++.+++..+++...++.|.+||..+.............+.+++++++++++++.. ++.|.+||....
T Consensus 102 ~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~ 181 (270)
T 1rwi_B 102 LPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESN 181 (270)
T ss_dssp CCCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEECCCCSCCSCCCEEECTTCCEEEEEGGGTEEEEECTTTC
T ss_pred eecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEeeccccCCCceeEEEeCCCCEEEEECCCCEEEEEecCCC
Confidence 21 1125688999999988666656678999998766544332223345678999999999777766 789999998765
Q ss_pred CCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEEEec-cCCCCeeEEEEeCCCCEEEEEECCCcEE
Q 003236 756 SKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLS-AHDKLVSSLAASTVNGMVASASHDKCVK 834 (837)
Q Consensus 756 ~~~~~i~~~~~~~~~I~sv~fspdg~~L~sgs~dg~I~IwDl~s~~~~~l~-~h~~~V~sla~spdg~~LaSgs~DG~I~ 834 (837)
. ...........+..++++++|..+++...++.|.+||.......... .+...+.+++++++|.++++...++.|+
T Consensus 182 ~---~~~~~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~v~ 258 (270)
T 1rwi_B 182 N---QVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTVLPFTGLNTPLAVAVDSDRTVYVADRGNDRVV 258 (270)
T ss_dssp C---EEECCCSSCCSEEEEEECTTCCEEEEETTTSCEEEECTTCSCCEECCCCSCSCEEEEEECTTCCEEEEEGGGTEEE
T ss_pred c---eEeecccCCCCceEEEECCCCCEEEEECCCCcEEEEcCCCCcceeeccCCCCCceeEEECCCCCEEEEECCCCEEE
Confidence 2 22222223367889999999965555555779999999776554433 3346789999999999888888999999
Q ss_pred EeC
Q 003236 835 IWK 837 (837)
Q Consensus 835 IWd 837 (837)
+|+
T Consensus 259 ~~~ 261 (270)
T 1rwi_B 259 KLT 261 (270)
T ss_dssp EEC
T ss_pred EEc
Confidence 985
|
| >1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ... | Back alignment and structure |
|---|
Probab=99.57 E-value=2.1e-12 Score=138.21 Aligned_cols=240 Identities=10% Similarity=0.083 Sum_probs=170.0
Q ss_pred cCCCCCeEEEEEcCCCCEEEE-------EECCCcEEEEeCCCCeEEEEec----cCCCCeEEEEEcCC-CCEEEEEeCCC
Q 003236 552 PASTSKVESCHFSPDGKLLAT-------GGHDKKAVLWCTESFTVKSTLE----EHTQWITDVRFSPS-LSRLATSSADR 619 (837)
Q Consensus 552 ~~H~~~V~sl~fSpdg~~Las-------gs~Dg~I~VWd~~t~~~~~~l~----~h~~~I~~l~fspd-g~~Latgs~Dg 619 (837)
...-....+++|+++|.++++ +..++.|.+||..+++...... ++...+.+++++++ ++++++ +.++
T Consensus 14 ~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v~-~~~~ 92 (314)
T 1pjx_A 14 TEDIPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVA-DMRL 92 (314)
T ss_dssp ECCCTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEE-ETTT
T ss_pred hccCCCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCcEEEE-ECCC
Confidence 344455789999999988887 5778999999988877653322 25567999999999 654444 4455
Q ss_pred eEEEEEcCCCCceeEE-ee----ccccceEEEEEcCCCCeEEEEEeCC---------------CcEEEEECCCCeeeeEE
Q 003236 620 TVRVWDTENPDYSLRT-FT----GHSTTVMSLDFHPSKEDLLCSCDNN---------------SEIRYWSINNGSCAGVF 679 (837)
Q Consensus 620 ~I~IWDl~~~~~~~~~-~~----~h~~~V~sl~fspdg~~llasgs~D---------------g~I~vwDl~t~~~i~~~ 679 (837)
.|.+||.. ++. ... .. .....+.++++++++. ++++...+ +.|..||.. ++.....
T Consensus 93 ~l~~~d~~-g~~-~~~~~~~~~~~~~~~~~~i~~d~~g~-l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~ 168 (314)
T 1pjx_A 93 GLLVVQTD-GTF-EEIAKKDSEGRRMQGCNDCAFDYEGN-LWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVD 168 (314)
T ss_dssp EEEEEETT-SCE-EECCSBCTTSCBCBCCCEEEECTTSC-EEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEE
T ss_pred CEEEEeCC-CCE-EEEEeccCCCccccCCcCEEECCCCC-EEEEecCcccccccccccccCCCCeEEEECCC-CCEEEec
Confidence 79999988 543 222 11 1124588999999986 44454433 568888876 6555444
Q ss_pred ecCCCeeEEEEe----cCCCEEEEEE-cCCeEEEEECC-CCe-----EEEEEcCCC-CCEEEEEEcCCCCEEEEEe-CCe
Q 003236 680 KCQSGATQMRFQ----PRLGRILAAA-IENYISILDVE-TQV-----CRLKLQGHK-NQVHSVCWNTSGEYLASVS-DEL 746 (837)
Q Consensus 680 ~~~~~i~sl~~s----p~g~~llags-~dg~I~iwDl~-s~~-----~~~~l~~h~-~~V~sl~~spdg~~Lasgs-Dg~ 746 (837)
........++++ ++++.++++. .++.|.+||+. ++. ....+..+. ..+..++++++|.++++.. ++.
T Consensus 169 ~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~~~~~ 248 (314)
T 1pjx_A 169 TAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSH 248 (314)
T ss_dssp EEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTE
T ss_pred cCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCCEEEEEcCCCE
Confidence 444567889999 9987777665 46899999976 443 223333343 5688999999999888876 889
Q ss_pred EEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEc-CCeEEEEECCC
Q 003236 747 VRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGC-YETLELWNMTE 799 (837)
Q Consensus 747 I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fspdg~~L~sgs~-dg~I~IwDl~s 799 (837)
|.+||..++ ..+..+..+...+.+++|++++..|++++. ++.|..|++..
T Consensus 249 i~~~d~~~g---~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~ 299 (314)
T 1pjx_A 249 IEVFGPDGG---QPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQR 299 (314)
T ss_dssp EEEECTTCB---SCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECSS
T ss_pred EEEEcCCCC---cEeEEEeCCCCCceeEEECCCCCEEEEEeCCCCeEEEEeCCC
Confidence 999998765 333444555578999999999996766654 56899999864
|
| >3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae} | Back alignment and structure |
|---|
Probab=99.56 E-value=1.1e-12 Score=139.67 Aligned_cols=241 Identities=10% Similarity=0.052 Sum_probs=178.6
Q ss_pred CCCEEEEEECCCcEEEEeCCCCeEEEEeccCC-CCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeEEeecc-ccce
Q 003236 566 DGKLLATGGHDKKAVLWCTESFTVKSTLEEHT-QWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGH-STTV 643 (837)
Q Consensus 566 dg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~-~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~~~~~~~~~~~h-~~~V 643 (837)
.+++|++++.|+.|.+||.++++.+..+..+. ..+.++.++|+|++|+ +.++.|.+||. +++. +..+..+ ...+
T Consensus 4 ~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG~ilv--s~~~~V~~~d~-~G~~-~W~~~~~~~~~~ 79 (276)
T 3no2_A 4 PQHLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATKAGEILF--SYSKGAKMITR-DGRE-LWNIAAPAGCEM 79 (276)
T ss_dssp CCEEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECTTSCEEE--ECBSEEEEECT-TSCE-EEEEECCTTCEE
T ss_pred CCcEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECCCCCEEE--eCCCCEEEECC-CCCE-EEEEcCCCCccc
Confidence 46789999999999999999999999998766 5789999999999888 45788999999 5554 5556554 3578
Q ss_pred EEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeeEEecCC-------CeeEEEEecCCCEEEEEEcCCeEEEEECCCCeE
Q 003236 644 MSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQS-------GATQMRFQPRLGRILAAAIENYISILDVETQVC 716 (837)
Q Consensus 644 ~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~~~-------~i~sl~~sp~g~~llags~dg~I~iwDl~s~~~ 716 (837)
.++.+.++|..+++.++.++.|..+|. +++.+..+.... ....+.+.++++++++...++.|.+||.+ ++.
T Consensus 80 ~~~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~-G~~ 157 (276)
T 3no2_A 80 QTARILPDGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATSEVREIAPN-GQL 157 (276)
T ss_dssp EEEEECTTSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETTTTEEEEECTT-SCE
T ss_pred cccEECCCCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceECCCCCEEEEecCCCEEEEECCC-CCE
Confidence 899999998865544433677888886 688777776422 24456788999999988889999999998 999
Q ss_pred EEEEcCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCC------CceEEEEEeCCCCEEEEEEcC
Q 003236 717 RLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTG------NKFHSCVFHPTFPSLLVIGCY 789 (837)
Q Consensus 717 ~~~l~~h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~------~~I~sv~fspdg~~L~sgs~d 789 (837)
+.++... ..+.++.+.+++.+++++. ++.|..+|..++ +.+..+.... ..+..+...++|..+++....
T Consensus 158 ~w~~~~~-~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG---~~~w~~~~~~~~~~~l~~~~~~~~~~~G~i~v~~~~g 233 (276)
T 3no2_A 158 LNSVKLS-GTPFSSAFLDNGDCLVACGDAHCFVQLNLESN---RIVRRVNANDIEGVQLFFVAQLFPLQNGGLYICNWQG 233 (276)
T ss_dssp EEEEECS-SCCCEEEECTTSCEEEECBTTSEEEEECTTTC---CEEEEEEGGGSBSCCCSEEEEEEECTTSCEEEEEECT
T ss_pred EEEEECC-CCccceeEcCCCCEEEEeCCCCeEEEEeCcCC---cEEEEecCCCCCCccccccccceEcCCCCEEEEeccC
Confidence 9888754 4566788899999998888 668999999887 5666654322 237888889999866665311
Q ss_pred --------CeEEEEEC-CCCcEE-EeccC--CCCeeEEE
Q 003236 790 --------ETLELWNM-TENKTL-TLSAH--DKLVSSLA 816 (837)
Q Consensus 790 --------g~I~IwDl-~s~~~~-~l~~h--~~~V~sla 816 (837)
+..+++++ .+++++ .+..+ -+.|.++|
T Consensus 234 ~~~~~~~~~~~~~~~~~~~g~~~W~~~~~~~~~~~~~~~ 272 (276)
T 3no2_A 234 HDREAGKGKHPQLVEIDSEGKVVWQLNDKVKFGMISTIC 272 (276)
T ss_dssp TCTTGGGSCCCSEEEECTTSBEEEEECCTTTSCCCCEEE
T ss_pred ccccccccCCceEEEECCCCCEEEEecCcccccceeeee
Confidence 23355555 456655 33322 34455544
|
| >2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=99.55 E-value=2.3e-13 Score=163.87 Aligned_cols=268 Identities=11% Similarity=-0.011 Sum_probs=173.3
Q ss_pred cCCCCEEEEEECCC-----cEEEEeCCCCeEEEEec------cCCCCeEEEEEcCCCCEEEE-----EeCCCeEEEEEcC
Q 003236 564 SPDGKLLATGGHDK-----KAVLWCTESFTVKSTLE------EHTQWITDVRFSPSLSRLAT-----SSADRTVRVWDTE 627 (837)
Q Consensus 564 Spdg~~Lasgs~Dg-----~I~VWd~~t~~~~~~l~------~h~~~I~~l~fspdg~~Lat-----gs~Dg~I~IWDl~ 627 (837)
+|+|++++....++ .|++.+...+.....+. +|...+.+++|+|||++||. |+.+..|++||+.
T Consensus 76 ~~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~d~~~~a~~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~ 155 (695)
T 2bkl_A 76 SRRNGRFFYVRTHKDKEKAILYWRQGESGQEKVLLDPNGWSKDGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVD 155 (695)
T ss_dssp EEETTEEEEEEECTTCSSCEEEEEESTTSCCEEEECGGGSSSSSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETT
T ss_pred EEECCEEEEEEEcCCCeEEEEEEEcCCCCCcEEEEchHHhccCCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECC
Confidence 47899888776544 24444554544333332 45557999999999999984 4445789999999
Q ss_pred CCCce-eEEeeccccceEEEEEcCCCCeEEEEEeCCCc-------------EEEEECCCCee--eeEEec---CCCeeEE
Q 003236 628 NPDYS-LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSE-------------IRYWSINNGSC--AGVFKC---QSGATQM 688 (837)
Q Consensus 628 ~~~~~-~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~-------------I~vwDl~t~~~--i~~~~~---~~~i~sl 688 (837)
+++.. ...+.. .....++|+|||..++++. .|.. |++|++.++.. ...+.. ...+..+
T Consensus 156 tg~~~~~~~~~~--~~~~~~~wspDg~~l~~~~-~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~ 232 (695)
T 2bkl_A 156 SGEWSKVDVIEG--GKYATPKWTPDSKGFYYEW-LPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQS 232 (695)
T ss_dssp TCCBCSSCCBSC--CTTCCCEECTTSSEEEEEE-CCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEE
T ss_pred CCCCcCCcccCc--ccccceEEecCCCEEEEEE-ecCCCCCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEE
Confidence 87642 111111 1126899999998766554 4444 99999998763 223322 2467899
Q ss_pred EEecCCCEEEEEEcCC----eEEEEECCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEe----CCeEEEEEcCCCCCcee
Q 003236 689 RFQPRLGRILAAAIEN----YISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS----DELVRVWSIGSGSKGEC 760 (837)
Q Consensus 689 ~~sp~g~~llags~dg----~I~iwDl~s~~~~~~l~~h~~~V~sl~~spdg~~Lasgs----Dg~I~IwDl~s~~~~~~ 760 (837)
.|+|+|++|++++.++ .|.++|..++... .+..+...+....| ++|.+++.+. ++.|.+||+.++.....
T Consensus 233 ~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~~~-~l~~~~~~~~~~~~-~~g~l~~~s~~~~~~~~l~~~d~~~~~~~~~ 310 (695)
T 2bkl_A 233 DLSRDGKYLFVYILRGWSENDVYWKRPGEKDFR-LLVKGVGAKYEVHA-WKDRFYVLTDEGAPRQRVFEVDPAKPARASW 310 (695)
T ss_dssp EECTTSCCEEEEEEETTTEEEEEEECTTCSSCE-EEEECSSCCEEEEE-ETTEEEEEECTTCTTCEEEEEBTTBCSGGGC
T ss_pred EECCCCCEEEEEEeCCCCceEEEEEcCCCCceE-EeecCCCceEEEEe-cCCcEEEEECCCCCCCEEEEEeCCCCCccCC
Confidence 9999999998887766 7778877655433 33345556666666 5555444443 36899999977632112
Q ss_pred EEEeecC-CCceEEEEEeCCCCEEEEEEcCCeEEEE--ECCCCcEEEeccC-CCCeeEEEEeCCCCEEEEEE----CCCc
Q 003236 761 IHELSCT-GNKFHSCVFHPTFPSLLVIGCYETLELW--NMTENKTLTLSAH-DKLVSSLAASTVNGMVASAS----HDKC 832 (837)
Q Consensus 761 i~~~~~~-~~~I~sv~fspdg~~L~sgs~dg~I~Iw--Dl~s~~~~~l~~h-~~~V~sla~spdg~~LaSgs----~DG~ 832 (837)
...+..+ ...+..++|+ ++..+++...++..+|| ++..+....+..+ ...|..+++++++..|+... .+++
T Consensus 311 ~~l~~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~ 389 (695)
T 2bkl_A 311 KEIVPEDSSASLLSVSIV-GGHLSLEYLKDATSEVRVATLKGKPVRTVQLPGVGAASNLMGLEDLDDAYYVFTSFTTPRQ 389 (695)
T ss_dssp EEEECCCSSCEEEEEEEE-TTEEEEEEEETTEEEEEEEETTCCEEEECCCSSSSEECCCBSCTTCSEEEEEEEETTEEEE
T ss_pred eEEecCCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCCCeeEEecCCCCeEEEEeecCCCCCEEEEEEcCCCCCCE
Confidence 2223333 4567888888 66677777888866666 4443333344444 66788889999997666332 3467
Q ss_pred EEEeC
Q 003236 833 VKIWK 837 (837)
Q Consensus 833 I~IWd 837 (837)
|++||
T Consensus 390 v~~~d 394 (695)
T 2bkl_A 390 IYKTS 394 (695)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 88875
|
| >2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* | Back alignment and structure |
|---|
Probab=99.55 E-value=2.6e-11 Score=128.16 Aligned_cols=240 Identities=10% Similarity=0.033 Sum_probs=167.5
Q ss_pred CCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCce
Q 003236 553 ASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYS 632 (837)
Q Consensus 553 ~H~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~~~~~ 632 (837)
.+...+.+++++++|.++++...++.|..||.........+......+.++++.+++.++++...++.|.+||. ++...
T Consensus 54 ~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~ 132 (299)
T 2z2n_A 54 TPDAKVMCLTISSDGEVWFTENAANKIGRITKKGIIKEYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKIR 132 (299)
T ss_dssp STTCCEEEEEECTTSCEEEEETTTTEEEEECTTSCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEE
T ss_pred cccCceeeEEECCCCCEEEeCCCCCeEEEECCCCcEEEEeCCCcCCCceeeEECCCCCEEEEecCCceEEEECC-CCCEE
Confidence 34567999999999998887776889999997632222223334567999999999988887777889999998 44432
Q ss_pred eEEeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeeE-Ee-cCCCeeEEEEecCCCEEEEEEcCCeEEEEE
Q 003236 633 LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGV-FK-CQSGATQMRFQPRLGRILAAAIENYISILD 710 (837)
Q Consensus 633 ~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~-~~-~~~~i~sl~~sp~g~~llags~dg~I~iwD 710 (837)
......+...+.++++++++. ++++...++.|.+||. +++.... .. ....+..+++.+++..+++...++.|.+||
T Consensus 133 ~~~~~~~~~~~~~i~~~~~g~-l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~ 210 (299)
T 2z2n_A 133 EYELPNKGSYPSFITLGSDNA-LWFTENQNNAIGRITE-SGDITEFKIPTPASGPVGITKGNDDALWFVEIIGNKIGRIT 210 (299)
T ss_dssp EEECSSTTCCEEEEEECTTSC-EEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEEC
T ss_pred EecCCCCCCCCceEEEcCCCC-EEEEeCCCCEEEEEcC-CCcEEEeeCCCCCCcceeEEECCCCCEEEEccCCceEEEEC
Confidence 222333456789999999875 5556666789999999 6665442 11 234578899999987655555578999999
Q ss_pred CCCCeEEE-EEcCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEc
Q 003236 711 VETQVCRL-KLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGC 788 (837)
Q Consensus 711 l~s~~~~~-~l~~h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fspdg~~L~sgs~ 788 (837)
. ++.... .+..+...+.+++++++|.++++.. ++.|.+||. ++. .....+..+...+.++++ +++. |++++.
T Consensus 211 ~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~--~~~~~~~~~~~~~~~i~~-~~g~-l~v~~~ 284 (299)
T 2z2n_A 211 T-SGEITEFKIPTPNARPHAITAGAGIDLWFTEWGANKIGRLTS-NNI--IEEYPIQIKSAEPHGICF-DGET-IWFAME 284 (299)
T ss_dssp T-TCCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEEET-TTE--EEEEECSSSSCCEEEEEE-CSSC-EEEEET
T ss_pred C-CCcEEEEECCCCCCCceeEEECCCCCEEEeccCCceEEEECC-CCc--eEEEeCCCCCCccceEEe-cCCC-EEEEec
Confidence 9 655332 2333557899999999999777765 789999998 331 111223344567899999 7776 455555
Q ss_pred CCeEEEEECCCCc
Q 003236 789 YETLELWNMTENK 801 (837)
Q Consensus 789 dg~I~IwDl~s~~ 801 (837)
.+.|..++..+++
T Consensus 285 ~~~l~~~~~~~~~ 297 (299)
T 2z2n_A 285 CDKIGKLTLIKDN 297 (299)
T ss_dssp TTEEEEEEEC---
T ss_pred CCcEEEEEcCccc
Confidence 6778888876654
|
| >1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum} | Back alignment and structure |
|---|
Probab=99.54 E-value=4.4e-13 Score=162.70 Aligned_cols=245 Identities=12% Similarity=0.039 Sum_probs=167.0
Q ss_pred CCCCeEEEEEcCCCCEEEEEECC-----CcEEEEeCCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCe--------
Q 003236 554 STSKVESCHFSPDGKLLATGGHD-----KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRT-------- 620 (837)
Q Consensus 554 H~~~V~sl~fSpdg~~Lasgs~D-----g~I~VWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~-------- 620 (837)
|...+..++|||||++||.++.+ ..|++||+.+++.+... .+...+..++|+|| +.|+.++.|+.
T Consensus 161 ~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~~-~~~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~ 238 (741)
T 1yr2_A 161 GATALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLADE-LKWVKFSGLAWLGN-DALLYSRFAEPKEGQAFQA 238 (741)
T ss_dssp --EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEEE-EEEEESCCCEESTT-SEEEEEECCCC--------
T ss_pred CCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCcc-CCCceeccEEEECC-CEEEEEEecCccccccccc
Confidence 33458899999999999887654 36999999998876532 12222468899999 99998887654
Q ss_pred ------EEEEEcCCCCce-eEEee--ccccceEEEEEcCCCCeEEEEEeC----CCcEEEEECCCC--eeeeEEe-cCCC
Q 003236 621 ------VRVWDTENPDYS-LRTFT--GHSTTVMSLDFHPSKEDLLCSCDN----NSEIRYWSINNG--SCAGVFK-CQSG 684 (837)
Q Consensus 621 ------I~IWDl~~~~~~-~~~~~--~h~~~V~sl~fspdg~~llasgs~----Dg~I~vwDl~t~--~~i~~~~-~~~~ 684 (837)
|++|++.++... ...+. .+...+.++.|+|||..+++++.. ...|++||+.++ ++...+. ....
T Consensus 239 ~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~ 318 (741)
T 1yr2_A 239 LNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDLKA 318 (741)
T ss_dssp CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECSSSS
T ss_pred CCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCCCCc
Confidence 899999876531 22222 233458899999999887766653 348999999877 4133333 3333
Q ss_pred eeEEEEecCCCEEEEEEcC----CeEEEEECCCC--eEEEEEcCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcC-CCC
Q 003236 685 ATQMRFQPRLGRILAAAIE----NYISILDVETQ--VCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIG-SGS 756 (837)
Q Consensus 685 i~sl~~sp~g~~llags~d----g~I~iwDl~s~--~~~~~l~~h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~-s~~ 756 (837)
+... ++++++.|+..+.+ +.|.+||+.++ .....+..+...+.+++|+ ++.++++.. |+..+||.+. ++
T Consensus 319 ~~~~-~~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g- 395 (741)
T 1yr2_A 319 QWDF-VDGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKDNLESVGIA-GNRLFASYIHDAKSQVLAFDLDG- 395 (741)
T ss_dssp CEEE-EEEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSSEEEEEEEE-BTEEEEEEEETTEEEEEEEETTS-
T ss_pred eEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCC-
Confidence 4444 45889998888764 45999999874 4444455555567778887 555666666 8876666554 23
Q ss_pred CceeEEEeec-CCCceEEEEEeCCCCEEEEEEc----CCeEEEEECCCCcEEEe
Q 003236 757 KGECIHELSC-TGNKFHSCVFHPTFPSLLVIGC----YETLELWNMTENKTLTL 805 (837)
Q Consensus 757 ~~~~i~~~~~-~~~~I~sv~fspdg~~L~sgs~----dg~I~IwDl~s~~~~~l 805 (837)
.....+.. ....+..+.++|++..|+.... .+.|++||+.+++...+
T Consensus 396 --~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~~~~l 447 (741)
T 1yr2_A 396 --KPAGAVSLPGIGSASGLSGRPGDRHAYLSFSSFTQPATVLALDPATAKTTPW 447 (741)
T ss_dssp --CEEEECBCSSSCEEEEEECCBTCSCEEEEEEETTEEEEEEEEETTTTEEEEC
T ss_pred --CceeeccCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCcEEEE
Confidence 34444543 3567888999999876664433 25899999998875444
|
| >2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H* | Back alignment and structure |
|---|
Probab=99.54 E-value=4e-11 Score=133.40 Aligned_cols=244 Identities=11% Similarity=0.058 Sum_probs=172.9
Q ss_pred EEecCCCCCeEEEEEcCCCCEEEEEE----------CCCcEEEEeCCCCeEEEEeccC-------CCCeEEEEEcCCCCE
Q 003236 549 QLIPASTSKVESCHFSPDGKLLATGG----------HDKKAVLWCTESFTVKSTLEEH-------TQWITDVRFSPSLSR 611 (837)
Q Consensus 549 ~~l~~H~~~V~sl~fSpdg~~Lasgs----------~Dg~I~VWd~~t~~~~~~l~~h-------~~~I~~l~fspdg~~ 611 (837)
..+.....+ .++|+|||++|+++. .++.|.+||..+++.+..+... ......++|+|||++
T Consensus 61 ~~i~~g~~p--~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~ 138 (373)
T 2mad_H 61 GHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNAD 138 (373)
T ss_pred EEecCCCCC--CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCccccccCCCccceEECCCCCE
Confidence 344443344 899999999998886 3678999999998888776432 123568999999999
Q ss_pred EEEEeC--CCeEEEEEcCCCCceeEE-eeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeeEEe-----c-C
Q 003236 612 LATSSA--DRTVRVWDTENPDYSLRT-FTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK-----C-Q 682 (837)
Q Consensus 612 Latgs~--Dg~I~IWDl~~~~~~~~~-~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~-----~-~ 682 (837)
|++++. ++.|.++| .+++. +.. +.. . .|+.+.|++...+++.+.||.+.++|. +++.+.... . .
T Consensus 139 l~v~n~~~~~~v~viD-~t~~~-~~~~i~~-~---~~~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~ 211 (373)
T 2mad_H 139 LLFFQFAAGPAVGLVV-QGGSS-DDQLLSS-P---TCYHIHPGAPSTFYLLCAQGGLAKTDH-AGGAAGAGLVGAMLTAA 211 (373)
T ss_pred EEEEecCCCCeEEEEE-CCCCE-EeEEcCC-C---ceEEEEeCCCceEEEEcCCCCEEEEEC-CCcEEEEEeccccccCC
Confidence 999874 57899999 87654 444 321 1 235566777767777888999999999 887664332 1 1
Q ss_pred CC-eeEEEEecCCCEEEEEEcCCeEEEEECCCCe--EEEEEcC----------CCCCEEEEEEcCCCCEEEEEe------
Q 003236 683 SG-ATQMRFQPRLGRILAAAIENYISILDVETQV--CRLKLQG----------HKNQVHSVCWNTSGEYLASVS------ 743 (837)
Q Consensus 683 ~~-i~sl~~sp~g~~llags~dg~I~iwDl~s~~--~~~~l~~----------h~~~V~sl~~spdg~~Lasgs------ 743 (837)
.. .....+.++++.++..+.++.|.++|+.... .+..+.. .......+.+++++..++++.
T Consensus 212 ~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~ 291 (373)
T 2mad_H 212 QNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAW 291 (373)
T ss_pred cceeecceeEecCCEEEEEcCCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCCCCEEEEEeccCCcc
Confidence 11 1234567777776666678899999997652 2222221 122344578899998877754
Q ss_pred -----CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCC-EEEEEE-cCCeEEEEECCCCcEEEe
Q 003236 744 -----DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFP-SLLVIG-CYETLELWNMTENKTLTL 805 (837)
Q Consensus 744 -----Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fspdg~-~L~sgs-~dg~I~IwDl~s~~~~~l 805 (837)
++.|.++|+.+. +.+..+.. ......++|+||++ .++++. .++.|.+||+.+++.+..
T Consensus 292 ~~~~~~~~V~VID~~t~---~vv~~i~~-g~~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t~~vv~~ 356 (373)
T 2mad_H 292 KLHAAAKEVTSVTGLVG---QTSSQISL-GHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQS 356 (373)
T ss_pred cccCCCCeEEEEECCCC---EEEEEEEC-CCCcCeEEECCCCCeEEEEEcCCCCeEEEEECCCCCEEee
Confidence 247999999887 56666643 44689999999999 677776 478999999999998844
|
| >1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ... | Back alignment and structure |
|---|
Probab=99.52 E-value=5.7e-12 Score=134.81 Aligned_cols=238 Identities=8% Similarity=-0.018 Sum_probs=163.8
Q ss_pred CCCCeEEEEEcCCCCEEEE-------EeCCCeEEEEEcCCCCceeEEe---eccccceEEEEEcCCCCeEEEEEeCCCcE
Q 003236 596 HTQWITDVRFSPSLSRLAT-------SSADRTVRVWDTENPDYSLRTF---TGHSTTVMSLDFHPSKEDLLCSCDNNSEI 665 (837)
Q Consensus 596 h~~~I~~l~fspdg~~Lat-------gs~Dg~I~IWDl~~~~~~~~~~---~~h~~~V~sl~fspdg~~llasgs~Dg~I 665 (837)
.-....+++|++++.++++ +..++.|.+||..+++...... .++...+.++++++++..++++.. +..|
T Consensus 16 ~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v~~~-~~~l 94 (314)
T 1pjx_A 16 DIPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADM-RLGL 94 (314)
T ss_dssp CCTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEET-TTEE
T ss_pred cCCCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCcEEEEEC-CCCE
Confidence 3346789999999988877 5778999999987766422111 124567899999998334554443 4479
Q ss_pred EEEECCCCeeeeE-Eec-----CCCeeEEEEecCCCEEEEEEcC---------------CeEEEEECCCCeEEEEEcCCC
Q 003236 666 RYWSINNGSCAGV-FKC-----QSGATQMRFQPRLGRILAAAIE---------------NYISILDVETQVCRLKLQGHK 724 (837)
Q Consensus 666 ~vwDl~t~~~i~~-~~~-----~~~i~sl~~sp~g~~llags~d---------------g~I~iwDl~s~~~~~~l~~h~ 724 (837)
.+||.. ++.... ... ...+.++++++++..+++...+ +.|..||.. ++..... .+.
T Consensus 95 ~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~-~~~ 171 (314)
T 1pjx_A 95 LVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVD-TAF 171 (314)
T ss_dssp EEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEE-EEE
T ss_pred EEEeCC-CCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-CCEEEec-cCC
Confidence 999998 765443 221 1347899999998776666554 578888876 5443322 234
Q ss_pred CCEEEEEEc----CCCCEEEEEe--CCeEEEEEcC-CCCC--ceeEEEeecCC-CceEEEEEeCCCCEEEEEEcCCeEEE
Q 003236 725 NQVHSVCWN----TSGEYLASVS--DELVRVWSIG-SGSK--GECIHELSCTG-NKFHSCVFHPTFPSLLVIGCYETLEL 794 (837)
Q Consensus 725 ~~V~sl~~s----pdg~~Lasgs--Dg~I~IwDl~-s~~~--~~~i~~~~~~~-~~I~sv~fspdg~~L~sgs~dg~I~I 794 (837)
.....++|+ ++++.|+++. ++.|.+||+. ++.. ...+..+..+. ..+..++++++|..+++...++.|.+
T Consensus 172 ~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~~~~~i~~ 251 (314)
T 1pjx_A 172 QFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHIEV 251 (314)
T ss_dssp SSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTEEEE
T ss_pred CCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCCEEEEEcCCCEEEE
Confidence 457889999 9997665554 7899999986 3311 01222333333 56788999999987777777889999
Q ss_pred EECCCCcEE-EeccCCCCeeEEEEeCCCCEEEEE-ECCCcEEEeC
Q 003236 795 WNMTENKTL-TLSAHDKLVSSLAASTVNGMVASA-SHDKCVKIWK 837 (837)
Q Consensus 795 wDl~s~~~~-~l~~h~~~V~sla~spdg~~LaSg-s~DG~I~IWd 837 (837)
||..+++.+ .+..+...+.+++|+++++.|+.+ ..++.|..|+
T Consensus 252 ~d~~~g~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~ 296 (314)
T 1pjx_A 252 FGPDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFE 296 (314)
T ss_dssp ECTTCBSCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred EcCCCCcEeEEEeCCCCCceeEEECCCCCEEEEEeCCCCeEEEEe
Confidence 999866654 445566789999999999955544 4567787764
|
| >3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus} | Back alignment and structure |
|---|
Probab=99.51 E-value=2.2e-12 Score=145.47 Aligned_cols=266 Identities=8% Similarity=0.045 Sum_probs=188.5
Q ss_pred CCCCEEEEEECC-----CcEEEEeCCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEe----------CCCeEEEEEcCCC
Q 003236 565 PDGKLLATGGHD-----KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSS----------ADRTVRVWDTENP 629 (837)
Q Consensus 565 pdg~~Lasgs~D-----g~I~VWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs----------~Dg~I~IWDl~~~ 629 (837)
++++.+++.... +.|.++|..+++.+.++..-..+ .++++||+++|+++. .++.|.++|..+.
T Consensus 82 ~~~~~vyV~n~~~~~~~~~VsVID~~t~~vv~~I~vG~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~ 159 (426)
T 3c75_H 82 PDARRVYIQDPAHFAAITQQFVIDGSTGRILGMTDGGFLP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTF 159 (426)
T ss_dssp CCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTC
T ss_pred CCCCEEEEECCCcCCCCCeEEEEECCCCEEEEEEECCCCC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCC
Confidence 466666655442 69999999999999998765555 899999999998886 3678999999987
Q ss_pred CceeEEee-c------cccceEEEEEcCCCCeEEEEEeC-CCcEEEEECCCCeeeeEEecCCCeeEEEEecCC-CEEEEE
Q 003236 630 DYSLRTFT-G------HSTTVMSLDFHPSKEDLLCSCDN-NSEIRYWSINNGSCAGVFKCQSGATQMRFQPRL-GRILAA 700 (837)
Q Consensus 630 ~~~~~~~~-~------h~~~V~sl~fspdg~~llasgs~-Dg~I~vwDl~t~~~i~~~~~~~~i~sl~~sp~g-~~llag 700 (837)
+. +..+. + .......+.|+||+++++++... ++.|.++|+.+++.+..+..... ....|++ ..+++.
T Consensus 160 ~v-v~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g~---~~~~p~g~~~~v~~ 235 (426)
T 3c75_H 160 LP-IADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPDC---YHIFPASPTVFYMN 235 (426)
T ss_dssp CE-EEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSE---EEEEEEETTEEEEE
T ss_pred cE-EEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCCc---eeeccCCCcEEEEE
Confidence 65 44332 2 12345678999999988766543 68999999999999988886432 3344433 566777
Q ss_pred EcCCeEEEEECCCCeEEEEE----cCCCCCE-EEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeec--------
Q 003236 701 AIENYISILDVETQVCRLKL----QGHKNQV-HSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSC-------- 766 (837)
Q Consensus 701 s~dg~I~iwDl~s~~~~~~l----~~h~~~V-~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~-------- 766 (837)
+.||.+.+.++.+++..... .....++ ..+.|.+++..++..+ .+.|.+.|+..... ..+..+..
T Consensus 236 ~~dG~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~-~v~~~~~~~~~~~i~~ 314 (426)
T 3c75_H 236 CRDGSLARVDFADGETKVTNTEVFHTEDELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGA-TFRAPIEALTEAERAD 314 (426)
T ss_dssp ETTSSEEEEECCTTCCEEEECCCCSCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCE-EECCCEESSCTTTGGG
T ss_pred cCCCCEEEEECCCCcEEEEeeeeeccCCCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCce-EEeeeeeecccccccc
Confidence 88899888888666544321 1111121 2356788888777767 88999999875421 11111110
Q ss_pred --CCCceEEEEEeCCCCEEEEEEc----------CCeEEEEECCCCcEEEeccCCCCeeEEEEeCCCC-EEEEEE-CCCc
Q 003236 767 --TGNKFHSCVFHPTFPSLLVIGC----------YETLELWNMTENKTLTLSAHDKLVSSLAASTVNG-MVASAS-HDKC 832 (837)
Q Consensus 767 --~~~~I~sv~fspdg~~L~sgs~----------dg~I~IwDl~s~~~~~l~~h~~~V~sla~spdg~-~LaSgs-~DG~ 832 (837)
.......+++++++..+++... .+.|.++|..+.+.+....-.....+++|+||++ +++++. .++.
T Consensus 315 g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I~vg~~P~gia~spDg~~~lyv~n~~s~~ 394 (426)
T 3c75_H 315 DWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGERINKIELGHEIDSINVSQDAEPLLYALSAGTQT 394 (426)
T ss_dssp TEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEEEECEEEECCSSSCEEEEEETTTTE
T ss_pred ccccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCCCeEEEEEECCCCcCeEEEccCCCEEEEEEcCCCCe
Confidence 0111223689999998888753 3479999999999884443344689999999999 888888 5899
Q ss_pred EEEeC
Q 003236 833 VKIWK 837 (837)
Q Consensus 833 I~IWd 837 (837)
|.|+|
T Consensus 395 VsVID 399 (426)
T 3c75_H 395 LHIYD 399 (426)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 99986
|
| >1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum} | Back alignment and structure |
|---|
Probab=99.48 E-value=3.5e-12 Score=154.72 Aligned_cols=268 Identities=12% Similarity=0.021 Sum_probs=171.7
Q ss_pred cCCCCEEEEEECCCc---EEEE--eCC---CCeEEEEe------ccCCCCeEEEEEcCCCCEEEEEeCC-----CeEEEE
Q 003236 564 SPDGKLLATGGHDKK---AVLW--CTE---SFTVKSTL------EEHTQWITDVRFSPSLSRLATSSAD-----RTVRVW 624 (837)
Q Consensus 564 Spdg~~Lasgs~Dg~---I~VW--d~~---t~~~~~~l------~~h~~~I~~l~fspdg~~Latgs~D-----g~I~IW 624 (837)
+|||++++....++. ..|| +.. .+.....+ .+|...+..++|+|||++|+.++.+ ..|++|
T Consensus 115 ~pdG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~ 194 (741)
T 1yr2_A 115 QRRGASVFYSWNSGLMNQSQLLVRPADAPVGTKGRVLLDPNTWAKDGATALDAWAASDDGRLLAYSVQDGGSDWRTVKFV 194 (741)
T ss_dssp EEETTEEEEEEECSSCSSCEEEEEETTSCTTCCCEEEECGGGCC----EEEEEEEECTTSSEEEEEEEETTCSEEEEEEE
T ss_pred EEECCEEEEEEEcCCCeEEEEEEEcCCccCCCCCEEEECHHHhccCCCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEE
Confidence 389998887765433 4455 443 33332221 2233468899999999999887654 469999
Q ss_pred EcCCCCceeEEeeccccceEEEEEcCCCCeEEEEEeCCC-------------cEEEEECCCCee--eeEEecC---CCee
Q 003236 625 DTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNS-------------EIRYWSINNGSC--AGVFKCQ---SGAT 686 (837)
Q Consensus 625 Dl~~~~~~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg-------------~I~vwDl~t~~~--i~~~~~~---~~i~ 686 (837)
|+.+++. +.. ..+...+..++|+|| +.++++...+. .|++|++.++.. ...+... ..+.
T Consensus 195 dl~tg~~-~~~-~~~~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~ 271 (741)
T 1yr2_A 195 GVADGKP-LAD-ELKWVKFSGLAWLGN-DALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGH 271 (741)
T ss_dssp ETTTCCE-EEE-EEEEEESCCCEESTT-SEEEEEECCCC--------CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEE
T ss_pred ECCCCCC-CCc-cCCCceeccEEEECC-CEEEEEEecCcccccccccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEE
Confidence 9998774 222 222223468899999 87776654322 399999987653 2233322 2478
Q ss_pred EEEEecCCCEEEEEEcCC-----eEEEEECCCC--eEEEEEcCCCCCEEEEEEcCCCCEEEEEe-C----CeEEEEEcCC
Q 003236 687 QMRFQPRLGRILAAAIEN-----YISILDVETQ--VCRLKLQGHKNQVHSVCWNTSGEYLASVS-D----ELVRVWSIGS 754 (837)
Q Consensus 687 sl~~sp~g~~llags~dg-----~I~iwDl~s~--~~~~~l~~h~~~V~sl~~spdg~~Lasgs-D----g~I~IwDl~s 754 (837)
.+.|+|+|++|+..+.++ .|++||+.++ .+...+..+...+.... +|+|..|+..+ + +.|.+||+.+
T Consensus 272 ~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~-~~dg~~l~~~s~~~~~~~~l~~~d~~~ 350 (741)
T 1yr2_A 272 GASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDLKAQWDFV-DGVGDQLWFVSGDGAPLKKIVRVDLSG 350 (741)
T ss_dssp EEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECSSSSCEEEE-EEETTEEEEEECTTCTTCEEEEEECSS
T ss_pred EEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCCCCceEEEE-eccCCEEEEEECCCCCCCEEEEEeCCC
Confidence 999999999998887654 8999999877 31445555555555554 48888887776 2 3599999877
Q ss_pred CCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEE--ECCCCcEEEecc-CCCCeeEEEEeCCCCEEE-EEE--
Q 003236 755 GSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELW--NMTENKTLTLSA-HDKLVSSLAASTVNGMVA-SAS-- 828 (837)
Q Consensus 755 ~~~~~~i~~~~~~~~~I~sv~fspdg~~L~sgs~dg~I~Iw--Dl~s~~~~~l~~-h~~~V~sla~spdg~~La-Sgs-- 828 (837)
+. ......+..+...+..+.++ ++..+++...++..+|| ++..+....+.. +...|..++++++++.|+ +.+
T Consensus 351 ~~-~~~~~l~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~ 428 (741)
T 1yr2_A 351 ST-PRFDTVVPESKDNLESVGIA-GNRLFASYIHDAKSQVLAFDLDGKPAGAVSLPGIGSASGLSGRPGDRHAYLSFSSF 428 (741)
T ss_dssp SS-CEEEEEECCCSSEEEEEEEE-BTEEEEEEEETTEEEEEEEETTSCEEEECBCSSSCEEEEEECCBTCSCEEEEEEET
T ss_pred Cc-cccEEEecCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCCCceeeccCCCCeEEEEeecCCCCCEEEEEEcCC
Confidence 42 12333334444556677887 55566777778765555 554443334443 467789999999987555 322
Q ss_pred -CCCcEEEeC
Q 003236 829 -HDKCVKIWK 837 (837)
Q Consensus 829 -~DG~I~IWd 837 (837)
..++|++||
T Consensus 429 ~~P~~i~~~d 438 (741)
T 1yr2_A 429 TQPATVLALD 438 (741)
T ss_dssp TEEEEEEEEE
T ss_pred CCCCEEEEEE
Confidence 346788775
|
| >3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ... | Back alignment and structure |
|---|
Probab=99.47 E-value=5.7e-12 Score=139.78 Aligned_cols=262 Identities=12% Similarity=0.128 Sum_probs=177.9
Q ss_pred EEEecCCCCCeEEEEEcCCCCEEEEEE----------CCCcEEEEeCCCCeEEEEeccCC-------CCeEEEEEcCCCC
Q 003236 548 FQLIPASTSKVESCHFSPDGKLLATGG----------HDKKAVLWCTESFTVKSTLEEHT-------QWITDVRFSPSLS 610 (837)
Q Consensus 548 ~~~l~~H~~~V~sl~fSpdg~~Lasgs----------~Dg~I~VWd~~t~~~~~~l~~h~-------~~I~~l~fspdg~ 610 (837)
+..+.....+ .++++|||++|+++. .++.|.+||..+++.+.++.... .....++|+|||+
T Consensus 72 ~~~I~vG~~P--~va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk 149 (386)
T 3sjl_D 72 IGMIDGGFLP--NPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGK 149 (386)
T ss_dssp EEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSS
T ss_pred EEEEECCCCC--cEEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCeEEEEEECCCccccccCCCCceEEEcCCCC
Confidence 3444433444 399999999887765 36789999999999988875321 2466799999999
Q ss_pred EEEEEeC--CCeEEEEEcCCCCceeEEeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCC-CeeeeEEec-----C
Q 003236 611 RLATSSA--DRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN-GSCAGVFKC-----Q 682 (837)
Q Consensus 611 ~Latgs~--Dg~I~IWDl~~~~~~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t-~~~i~~~~~-----~ 682 (837)
+|+++.. ++.|.++|+.+.+. +..+.... |..+.|.+...+++.+.||.+.+.++.+ ++....... .
T Consensus 150 ~lyVan~~~~~~VsVID~~t~~v-v~tI~v~g----~~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~ 224 (386)
T 3sjl_D 150 TLLFYQFSPAPAVGVVDLEGKAF-KRMLDVPD----CYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPED 224 (386)
T ss_dssp EEEEEECSSSCEEEEEETTTTEE-EEEEECCS----EEEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTT
T ss_pred EEEEEEcCCCCeEEEEECCCCcE-EEEEECCC----cceeecCCCceeEEECCCCCEEEEECCCCCeEEEeecceecccc
Confidence 9998874 68999999998764 44443211 1223355555555777799999999976 554321111 0
Q ss_pred CCe-eEEEEecCCCEEEEEEcCCeEEEEECCCCe--EEEEEc---------C-CCCCEEEEEEcCCCCEEEEEe-C----
Q 003236 683 SGA-TQMRFQPRLGRILAAAIENYISILDVETQV--CRLKLQ---------G-HKNQVHSVCWNTSGEYLASVS-D---- 744 (837)
Q Consensus 683 ~~i-~sl~~sp~g~~llags~dg~I~iwDl~s~~--~~~~l~---------~-h~~~V~sl~~spdg~~Lasgs-D---- 744 (837)
..+ ....|.+.++.++..+.+|.|+++|+.+.. .+..+. + ....+..+++++++..+++.. +
T Consensus 225 ~~~~~~~~~~~~dG~~~~vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~ 304 (386)
T 3sjl_D 225 EFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEW 304 (386)
T ss_dssp SCBCSCCEEETTTTEEEEEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTT
T ss_pred ccccccceeEcCCCcEEEEeCCCEEEEEECCCCcceeecceeccccccccccccCCCcceeeECCCCCeEEEEecccccc
Confidence 111 124565434455557778999999997653 332221 0 122334577899998888764 1
Q ss_pred ------CeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCC-EEEEEEc-CCeEEEEECCCCcEEEeccCCCCeeEEE
Q 003236 745 ------ELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFP-SLLVIGC-YETLELWNMTENKTLTLSAHDKLVSSLA 816 (837)
Q Consensus 745 ------g~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fspdg~-~L~sgs~-dg~I~IwDl~s~~~~~l~~h~~~V~sla 816 (837)
+.|.++|+.+. +.+..+.. +..+..|++++|++ .|+++.. ++.|.++|..+++.+......+..+.|.
T Consensus 305 ~hk~~~~~V~viD~~t~---kv~~~i~v-g~~~~~lavs~D~~~~ly~tn~~~~~VsViD~~t~k~~~~i~~~~~p~~l~ 380 (386)
T 3sjl_D 305 RHKTASRFVVVLDAKTG---ERLAKFEM-GHEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVNQLGHGPQVI 380 (386)
T ss_dssp CTTSCEEEEEEEETTTC---CEEEEEEE-EEEECEEEECSSSSCEEEEEETTTTEEEEEETTTCCEEEEECCCCSSCCEE
T ss_pred ccCCCCCEEEEEECCCC---eEEEEEEC-CCCcceEEECCCCCeEEEEEcCCCCeEEEEECCCCcEEEEecCCCCCceeE
Confidence 47999999988 55555543 34688999999996 6777654 7899999999999986655556666677
Q ss_pred EeCC
Q 003236 817 ASTV 820 (837)
Q Consensus 817 ~spd 820 (837)
+++|
T Consensus 381 ~s~d 384 (386)
T 3sjl_D 381 TTAD 384 (386)
T ss_dssp EECC
T ss_pred ECCc
Confidence 7776
|
| >3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae} | Back alignment and structure |
|---|
Probab=99.47 E-value=2.5e-11 Score=129.33 Aligned_cols=214 Identities=12% Similarity=0.042 Sum_probs=165.6
Q ss_pred CCeEEcccCCCceEEeecCCCCCCCCccccccccCCCeeeeEEEEecCCC-CCeEEEEEcCCCCEEEEEECCCcEEEEeC
Q 003236 506 DRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPAST-SKVESCHFSPDGKLLATGGHDKKAVLWCT 584 (837)
Q Consensus 506 ~~~v~~Gs~D~~v~~w~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~H~-~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~ 584 (837)
++++++++.|+.|.+|...++ . .+..+..+. ..+.++.++|+|++|+ +.++.|..||.
T Consensus 5 ~~~lv~~~~~~~v~~~d~~tG----------------~---~~w~~~~~~~~~~~~~~~~pdG~ilv--s~~~~V~~~d~ 63 (276)
T 3no2_A 5 QHLLVGGSGWNKIAIINKDTK----------------E---IVWEYPLEKGWECNSVAATKAGEILF--SYSKGAKMITR 63 (276)
T ss_dssp CEEEEECTTCSEEEEEETTTT----------------E---EEEEEECCTTCCCCEEEECTTSCEEE--ECBSEEEEECT
T ss_pred CcEEEeeCCCCEEEEEECCCC----------------e---EEEEeCCCccCCCcCeEECCCCCEEE--eCCCCEEEECC
Confidence 578889999999999954332 1 223334444 4688999999999888 45788999998
Q ss_pred CCCeEEEEeccCC-CCeEEEEEcCCCCEEEEEeC-CCeEEEEEcCCCCceeEEee------ccccceEEEEEcCCCCeEE
Q 003236 585 ESFTVKSTLEEHT-QWITDVRFSPSLSRLATSSA-DRTVRVWDTENPDYSLRTFT------GHSTTVMSLDFHPSKEDLL 656 (837)
Q Consensus 585 ~t~~~~~~l~~h~-~~I~~l~fspdg~~Latgs~-Dg~I~IWDl~~~~~~~~~~~------~h~~~V~sl~fspdg~~ll 656 (837)
+++.+..+..+. ..+.++.+.++|++|++.+. ++.|..+|.+ ++. +..+. .+......+++.++++ ++
T Consensus 64 -~G~~~W~~~~~~~~~~~~~~~~~dG~~lv~~~~~~~~v~~vd~~-Gk~-l~~~~~~~~~~~~~~~~~~v~~~~~G~-~l 139 (276)
T 3no2_A 64 -DGRELWNIAAPAGCEMQTARILPDGNALVAWCGHPSTILEVNMK-GEV-LSKTEFETGIERPHAQFRQINKNKKGN-YL 139 (276)
T ss_dssp -TSCEEEEEECCTTCEEEEEEECTTSCEEEEEESTTEEEEEECTT-SCE-EEEEEECCSCSSGGGSCSCCEECTTSC-EE
T ss_pred -CCCEEEEEcCCCCccccccEECCCCCEEEEecCCCCEEEEEeCC-CCE-EEEEeccCCCCcccccccCceECCCCC-EE
Confidence 889998887653 57889999999999999887 7888888763 443 33332 1223455667888877 55
Q ss_pred EEEeCCCcEEEEECCCCeeeeEEecCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEcCCC------CCEEEE
Q 003236 657 CSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHK------NQVHSV 730 (837)
Q Consensus 657 asgs~Dg~I~vwDl~t~~~i~~~~~~~~i~sl~~sp~g~~llags~dg~I~iwDl~s~~~~~~l~~h~------~~V~sl 730 (837)
++...++.|.+||.. ++.+..+.....+.++.+.++++.++++..++.|..+|..+++.+.++..+. ..+..+
T Consensus 140 v~~~~~~~v~~~d~~-G~~~w~~~~~~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~l~~~~~~ 218 (276)
T 3no2_A 140 VPLFATSEVREIAPN-GQLLNSVKLSGTPFSSAFLDNGDCLVACGDAHCFVQLNLESNRIVRRVNANDIEGVQLFFVAQL 218 (276)
T ss_dssp EEETTTTEEEEECTT-SCEEEEEECSSCCCEEEECTTSCEEEECBTTSEEEEECTTTCCEEEEEEGGGSBSCCCSEEEEE
T ss_pred EEecCCCEEEEECCC-CCEEEEEECCCCccceeEcCCCCEEEEeCCCCeEEEEeCcCCcEEEEecCCCCCCccccccccc
Confidence 678889999999998 9999999887778888889999989888888899999999999999886432 237888
Q ss_pred EEcCCCCEEEEEeCC
Q 003236 731 CWNTSGEYLASVSDE 745 (837)
Q Consensus 731 ~~spdg~~LasgsDg 745 (837)
...++|.++++..+|
T Consensus 219 ~~~~~G~i~v~~~~g 233 (276)
T 3no2_A 219 FPLQNGGLYICNWQG 233 (276)
T ss_dssp EECTTSCEEEEEECT
T ss_pred eEcCCCCEEEEeccC
Confidence 899999988887533
|
| >2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} | Back alignment and structure |
|---|
Probab=99.46 E-value=2.2e-10 Score=121.04 Aligned_cols=235 Identities=9% Similarity=-0.009 Sum_probs=165.5
Q ss_pred CCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEE-EEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCc
Q 003236 553 ASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVK-STLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDY 631 (837)
Q Consensus 553 ~H~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~~-~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~~~~ 631 (837)
.+...+.+++++++|.++++...++.|.+||.. ++.. ..+......+.++++.+++.++++...++.|..||.. +..
T Consensus 59 ~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~ 136 (300)
T 2qc5_A 59 TPDAKVMCLIVSSLGDIWFTENGANKIGKLSKK-GGFTEYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTI 136 (300)
T ss_dssp STTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCE
T ss_pred CCCCcceeEEECCCCCEEEEecCCCeEEEECCC-CCeEEecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCE
Confidence 445678999999999888777667899999987 5543 2333344679999999999888877778899999987 443
Q ss_pred eeEEeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeeEEec---CCCeeEEEEecCCCEEEEEEcCCeEEE
Q 003236 632 SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC---QSGATQMRFQPRLGRILAAAIENYISI 708 (837)
Q Consensus 632 ~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~---~~~i~sl~~sp~g~~llags~dg~I~i 708 (837)
....+......+.++++.+++. ++++...++.|.+||. +++... +.. ...+..+++.+++..+++....+.|.+
T Consensus 137 ~~~~~~~~~~~~~~i~~d~~g~-l~v~~~~~~~i~~~~~-~g~~~~-~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~ 213 (300)
T 2qc5_A 137 YEYDLPNKGSYPAFITLGSDNA-LWFTENQNNSIGRITN-TGKLEE-YPLPTNAAAPVGITSGNDGALWFVEIMGNKIGR 213 (300)
T ss_dssp EEEECSSTTCCEEEEEECTTSS-EEEEETTTTEEEEECT-TCCEEE-EECSSTTCCEEEEEECTTSSEEEEETTTTEEEE
T ss_pred EEccCCCCCCCceeEEECCCCC-EEEEecCCCeEEEECC-CCcEEE-eeCCCCCCCcceEEECCCCCEEEEccCCCEEEE
Confidence 2222333456789999999877 6656666788999998 555443 322 345788999998765555555678999
Q ss_pred EECCCCeEEE-EEcCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEE
Q 003236 709 LDVETQVCRL-KLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVI 786 (837)
Q Consensus 709 wDl~s~~~~~-~l~~h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fspdg~~L~sg 786 (837)
||. ++.... .+..+...+.+++++++|.++++.. ++.|.+||.. +. .....+......+.+++++++|. |+++
T Consensus 214 ~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~~-g~--~~~~~~~~~~~~~~~i~~~~~g~-l~v~ 288 (300)
T 2qc5_A 214 ITT-TGEISEYDIPTPNARPHAITAGKNSEIWFTEWGANQIGRITND-NT--IQEYQLQTENAEPHGITFGKDGS-VWFA 288 (300)
T ss_dssp ECT-TCCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SC--EEEEECCSTTCCCCCEEECTTSC-EEEE
T ss_pred EcC-CCcEEEEECCCCCCCceEEEECCCCCEEEeccCCCeEEEECCC-Cc--EEEEECCccCCccceeEeCCCCC-EEEE
Confidence 998 444332 3334556789999999999777665 6899999983 31 12222333346688899999987 4444
Q ss_pred EcCCeEEEEECC
Q 003236 787 GCYETLELWNMT 798 (837)
Q Consensus 787 s~dg~I~IwDl~ 798 (837)
+.. .|..+|..
T Consensus 289 ~~~-~i~~~~p~ 299 (300)
T 2qc5_A 289 LKC-KIGKLNLN 299 (300)
T ss_dssp CSS-EEEEEEEC
T ss_pred ccC-ceEEeCCC
Confidence 444 77777753
|
| >3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A* | Back alignment and structure |
|---|
Probab=99.44 E-value=4.8e-12 Score=152.38 Aligned_cols=245 Identities=13% Similarity=0.041 Sum_probs=168.5
Q ss_pred CCCCCeEEEEEcCCCCEEEEEE-----CCCcEEEEeCCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCe-------
Q 003236 553 ASTSKVESCHFSPDGKLLATGG-----HDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRT------- 620 (837)
Q Consensus 553 ~H~~~V~sl~fSpdg~~Lasgs-----~Dg~I~VWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~------- 620 (837)
+|...|..++|||||++||.+. ....|+|||+.+++.+... .+......++|+ |++.|+.++.+..
T Consensus 126 ~~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~-~~~~k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~~ 203 (693)
T 3iuj_A 126 DGTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETP-LKDVKFSGISWL-GNEGFFYSSYDKPDGSELSA 203 (693)
T ss_dssp TSCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEE-EEEEESCCCEEE-TTTEEEEEESSCCC------
T ss_pred CCcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCccc-cCCceeccEEEe-CCCEEEEEEecCcccccccc
Confidence 3455688899999999988643 2357999999998865431 111113578899 9999999988743
Q ss_pred ------EEEEEcCCCCc---eeEEeec-cccceEEEEEcCCCCeEEEEEeCC---CcEEEEECCCCe-eeeEEec-CCCe
Q 003236 621 ------VRVWDTENPDY---SLRTFTG-HSTTVMSLDFHPSKEDLLCSCDNN---SEIRYWSINNGS-CAGVFKC-QSGA 685 (837)
Q Consensus 621 ------I~IWDl~~~~~---~~~~~~~-h~~~V~sl~fspdg~~llasgs~D---g~I~vwDl~t~~-~i~~~~~-~~~i 685 (837)
|++|++.++.. .+..... |...+.++.|+||+..++++.+.+ ..|+++|+.++. ....+.. ....
T Consensus 204 ~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~~~~~ 283 (693)
T 3iuj_A 204 RTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQGDLDAD 283 (693)
T ss_dssp -CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEECSSSSC
T ss_pred cCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEeCCCCce
Confidence 99999987643 2222233 445678899999999888776533 589999998763 2333333 3333
Q ss_pred eEEEEecCCCEEEEEEcC----CeEEEEECCCCeE--EEEEcCCCCCEEEEEEcCCCCEEEEEe--CC--eEEEEEcCCC
Q 003236 686 TQMRFQPRLGRILAAAIE----NYISILDVETQVC--RLKLQGHKNQVHSVCWNTSGEYLASVS--DE--LVRVWSIGSG 755 (837)
Q Consensus 686 ~sl~~sp~g~~llags~d----g~I~iwDl~s~~~--~~~l~~h~~~V~sl~~spdg~~Lasgs--Dg--~I~IwDl~s~ 755 (837)
... ++++++.|+..+.. +.|.++|+.++.. ...+..|...+. .|++++++|+... ++ .|++||+..+
T Consensus 284 ~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~--~~s~~g~~lv~~~~~~g~~~l~~~d~~g~ 360 (693)
T 3iuj_A 284 VSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVL--TVHSGSGYLFAEYMVDATARVEQFDYEGK 360 (693)
T ss_dssp EEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCE--EEEEETTEEEEEEEETTEEEEEEECTTSC
T ss_pred EEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCEE--EEEEECCEEEEEEEECCeeEEEEEECCCC
Confidence 333 67777877766653 5799999987643 234555666655 8899999888776 55 6889988743
Q ss_pred CCceeEEEeec-CCCceEEEEEeCCCCEEEEEEcC----CeEEEEECCCCcEEEec
Q 003236 756 SKGECIHELSC-TGNKFHSCVFHPTFPSLLVIGCY----ETLELWNMTENKTLTLS 806 (837)
Q Consensus 756 ~~~~~i~~~~~-~~~~I~sv~fspdg~~L~sgs~d----g~I~IwDl~s~~~~~l~ 806 (837)
....+.. ....+..+.+++++..|+....+ +.|+.||+.+++...+.
T Consensus 361 ----~~~~l~~p~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g~~~~l~ 412 (693)
T 3iuj_A 361 ----RVREVALPGLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSGAISLYR 412 (693)
T ss_dssp ----EEEEECCSSSSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTCCEEEEE
T ss_pred ----eeEEeecCCCceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCCeEEEEE
Confidence 2333332 33457777888888877776655 68999999888755443
|
| >3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B | Back alignment and structure |
|---|
Probab=99.44 E-value=1.5e-10 Score=123.93 Aligned_cols=230 Identities=10% Similarity=0.035 Sum_probs=157.4
Q ss_pred EeccCCCCeEEEEEcCCC-CEEEEEeCCCeEEEEEcCCCCceeEEeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEEC
Q 003236 592 TLEEHTQWITDVRFSPSL-SRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSI 670 (837)
Q Consensus 592 ~l~~h~~~I~~l~fspdg-~~Latgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl 670 (837)
.+..+.....+..|++++ .++++...++.|+.||..++.. ..+ .....+.++++++++. ++++ . +..|.+||.
T Consensus 7 ~~~~~~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~--~~~-~~~~~~~~i~~~~dG~-l~v~-~-~~~l~~~d~ 80 (297)
T 3g4e_A 7 VLPENCRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQV--QRV-TMDAPVSSVALRQSGG-YVAT-I-GTKFCALNW 80 (297)
T ss_dssp EECCCCSBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCE--EEE-ECSSCEEEEEEBTTSS-EEEE-E-TTEEEEEET
T ss_pred EeccCCccccCCeEECCCCEEEEEECCCCEEEEEECCCCcE--EEE-eCCCceEEEEECCCCC-EEEE-E-CCeEEEEEC
Confidence 344455567789999964 4556666789999999987653 222 2456799999999988 4433 3 568999999
Q ss_pred CCCeeeeEEecC-----CCeeEEEEecCCCEEEEEEcC-----------CeEEEEECCCCeEEEEEcCCCCCEEEEEEcC
Q 003236 671 NNGSCAGVFKCQ-----SGATQMRFQPRLGRILAAAIE-----------NYISILDVETQVCRLKLQGHKNQVHSVCWNT 734 (837)
Q Consensus 671 ~t~~~i~~~~~~-----~~i~sl~~sp~g~~llags~d-----------g~I~iwDl~s~~~~~~l~~h~~~V~sl~~sp 734 (837)
.+++........ ..+..++++++++.+++.... +.|+.+|.. ++... +..+....+.++|+|
T Consensus 81 ~~g~~~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~-g~~~~-~~~~~~~pngi~~sp 158 (297)
T 3g4e_A 81 KEQSAVVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPD-HHVKK-YFDQVDISNGLDWSL 158 (297)
T ss_dssp TTTEEEEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTT-SCEEE-EEEEESBEEEEEECT
T ss_pred CCCcEEEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECC-CCEEE-EeeccccccceEEcC
Confidence 988765444321 236789999998865544322 345555543 33322 222344578999999
Q ss_pred CCCEEEEEe--CCeEEEEEcC--CCCCc--eeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE-Eecc
Q 003236 735 SGEYLASVS--DELVRVWSIG--SGSKG--ECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSA 807 (837)
Q Consensus 735 dg~~Lasgs--Dg~I~IwDl~--s~~~~--~~i~~~~~~~~~I~sv~fspdg~~L~sgs~dg~I~IwDl~s~~~~-~l~~ 807 (837)
+++.|+.+. ++.|.+||+. ++... ..+..+.........++++++|...++....+.|.+||..+++.+ .+..
T Consensus 159 dg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG~~~~~i~~ 238 (297)
T 3g4e_A 159 DHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPVTGKRLQTVKL 238 (297)
T ss_dssp TSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTTEEEEECTTTCCEEEEEEC
T ss_pred CCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCCCceEEEEEEC
Confidence 999776655 7899999984 44211 122333333456789999999986666666778999999988877 5555
Q ss_pred CCCCeeEEEEe-CCCCEEEEEEC
Q 003236 808 HDKLVSSLAAS-TVNGMVASASH 829 (837)
Q Consensus 808 h~~~V~sla~s-pdg~~LaSgs~ 829 (837)
+...+++++|. |+++.|+.++.
T Consensus 239 p~~~~t~~~f~g~d~~~L~vt~~ 261 (297)
T 3g4e_A 239 PVDKTTSCCFGGKNYSEMYVTCA 261 (297)
T ss_dssp SSSBEEEEEEESGGGCEEEEEEB
T ss_pred CCCCceEEEEeCCCCCEEEEEcC
Confidence 66789999998 88876655543
|
| >3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482} | Back alignment and structure |
|---|
Probab=99.44 E-value=4.5e-11 Score=134.69 Aligned_cols=230 Identities=10% Similarity=0.029 Sum_probs=161.5
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeEEeeccccceEEEEEcCCCCeEEEEEeCCC--cEEEEECCCCee
Q 003236 598 QWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNS--EIRYWSINNGSC 675 (837)
Q Consensus 598 ~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg--~I~vwDl~t~~~ 675 (837)
.....|+|+++++++++...++.|++||..++.. ...... ..... ++|++++..++ +++.++ .|.+|+...+..
T Consensus 131 ~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~-~~~~~~-~~~~~-ia~~~~g~~l~-~~d~~~~~~I~~~d~~~~~~ 206 (409)
T 3hrp_A 131 KYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKV-TTVHPG-FKGGK-PAVTKDKQRVY-SIGWEGTHTVYVYMKASGWA 206 (409)
T ss_dssp CCEEEEEECSTTEEEEEETTTTEEEEEETTTTEE-EEEEET-CCBCB-CEECTTSSEEE-EEBSSTTCEEEEEEGGGTTC
T ss_pred CCceEEEEeCCCCEEEEecCCCcEEEEECCCCEE-EEeecc-CCCCc-eeEecCCCcEE-EEecCCCceEEEEEcCCCce
Confidence 4688999999999777777789999999987543 222222 33344 99999988655 444444 899999876655
Q ss_pred eeEE----e-cCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEE----EcCCCCCE--EEEEEcCCCCEEEEE-e
Q 003236 676 AGVF----K-CQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLK----LQGHKNQV--HSVCWNTSGEYLASV-S 743 (837)
Q Consensus 676 i~~~----~-~~~~i~sl~~sp~g~~llags~dg~I~iwDl~s~~~~~~----l~~h~~~V--~sl~~spdg~~Lasg-s 743 (837)
...+ . ....+.+++++|+++.|+++..++.|+.||..++..... ..++...- ..++|+|++..|+++ .
T Consensus 207 ~~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~ 286 (409)
T 3hrp_A 207 PTRIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQ 286 (409)
T ss_dssp EEEEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEEEEEET
T ss_pred eEEeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCEEEEEeC
Confidence 4444 2 335678899999777788877788999999987754332 22222222 399999965444444 4
Q ss_pred -CCeEEEEEcCCCCCceeEEEeecC---------------CCceEEEEEeCCCCEEEEEE-cCCeEEEEECCCCcEEEec
Q 003236 744 -DELVRVWSIGSGSKGECIHELSCT---------------GNKFHSCVFHPTFPSLLVIG-CYETLELWNMTENKTLTLS 806 (837)
Q Consensus 744 -Dg~I~IwDl~s~~~~~~i~~~~~~---------------~~~I~sv~fspdg~~L~sgs-~dg~I~IwDl~s~~~~~l~ 806 (837)
++.|+.|+.... +..+.++ -.....++++++|..+++-. .++.|+.||+.++....+.
T Consensus 287 ~~~~I~~~~~~g~-----~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G~v~~~~ 361 (409)
T 3hrp_A 287 NLSSVYKITPDGE-----CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDGYVSTVA 361 (409)
T ss_dssp TTTEEEEECTTCC-----EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTTTEEEEEE
T ss_pred CCCEEEEEecCCC-----EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCCEEEEEe
Confidence 779999987643 2222222 13478899999999555555 5779999998888877665
Q ss_pred cC---------------CCCeeEEEEeCCCCEEEEEECCCcEEEe
Q 003236 807 AH---------------DKLVSSLAASTVNGMVASASHDKCVKIW 836 (837)
Q Consensus 807 ~h---------------~~~V~sla~spdg~~LaSgs~DG~I~IW 836 (837)
++ -.....|++++++.++++-..++.|+.+
T Consensus 362 g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i 406 (409)
T 3hrp_A 362 GQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRKY 406 (409)
T ss_dssp ECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEEEE
T ss_pred CCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEEEE
Confidence 54 2468999999998888877778888765
|
| >3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B | Back alignment and structure |
|---|
Probab=99.44 E-value=1.5e-10 Score=124.04 Aligned_cols=231 Identities=12% Similarity=0.103 Sum_probs=159.3
Q ss_pred ecCCCCCeEEEEEcCCC-CEEEEEECCCcEEEEeCCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCC
Q 003236 551 IPASTSKVESCHFSPDG-KLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENP 629 (837)
Q Consensus 551 l~~H~~~V~sl~fSpdg-~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~~ 629 (837)
+..+..-..+..|++++ .++++...++.|+.||..++... .+ .....+.+++++++++++++ . ++.|.+||..++
T Consensus 8 ~~~~~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~~-~~-~~~~~~~~i~~~~dG~l~v~-~-~~~l~~~d~~~g 83 (297)
T 3g4e_A 8 LPENCRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQVQ-RV-TMDAPVSSVALRQSGGYVAT-I-GTKFCALNWKEQ 83 (297)
T ss_dssp ECCCCSBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEE-EE-ECSSCEEEEEEBTTSSEEEE-E-TTEEEEEETTTT
T ss_pred eccCCccccCCeEECCCCEEEEEECCCCEEEEEECCCCcEE-EE-eCCCceEEEEECCCCCEEEE-E-CCeEEEEECCCC
Confidence 34444556789999954 46666667899999999887653 33 24567999999999995544 4 567999999876
Q ss_pred CceeEEee-c--cccceEEEEEcCCCCeEEEEEeC----------CCcEEEEECCCCeeeeEEecCCCeeEEEEecCCCE
Q 003236 630 DYSLRTFT-G--HSTTVMSLDFHPSKEDLLCSCDN----------NSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGR 696 (837)
Q Consensus 630 ~~~~~~~~-~--h~~~V~sl~fspdg~~llasgs~----------Dg~I~vwDl~t~~~i~~~~~~~~i~sl~~sp~g~~ 696 (837)
........ . ....+.+++++|+|..++.+... .+.|+.++.. ++.............++|+|+++.
T Consensus 84 ~~~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~-g~~~~~~~~~~~pngi~~spdg~~ 162 (297)
T 3g4e_A 84 SAVVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPD-HHVKKYFDQVDISNGLDWSLDHKI 162 (297)
T ss_dssp EEEEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTT-SCEEEEEEEESBEEEEEECTTSCE
T ss_pred cEEEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECC-CCEEEEeeccccccceEEcCCCCE
Confidence 53211111 1 12457899999998744433221 1344444443 444444444455788999999998
Q ss_pred EEEEEc-CCeEEEEEC--CCCeE-----EEEEcCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecC
Q 003236 697 ILAAAI-ENYISILDV--ETQVC-----RLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCT 767 (837)
Q Consensus 697 llags~-dg~I~iwDl--~s~~~-----~~~l~~h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~ 767 (837)
++++.. ++.|.+||+ .++.. ...+..+...+..++++++|.++++.. ++.|.+||..++ +.+..+...
T Consensus 163 lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG---~~~~~i~~p 239 (297)
T 3g4e_A 163 FYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPVTG---KRLQTVKLP 239 (297)
T ss_dssp EEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTTEEEEECTTTC---CEEEEEECS
T ss_pred EEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCCCc---eEEEEEECC
Confidence 876665 689999987 45432 223333446788999999998887776 678999999877 566677766
Q ss_pred CCceEEEEEe-CCCCEEEEEEcC
Q 003236 768 GNKFHSCVFH-PTFPSLLVIGCY 789 (837)
Q Consensus 768 ~~~I~sv~fs-pdg~~L~sgs~d 789 (837)
...+++|+|. |+++.|++++..
T Consensus 240 ~~~~t~~~f~g~d~~~L~vt~~~ 262 (297)
T 3g4e_A 240 VDKTTSCCFGGKNYSEMYVTCAR 262 (297)
T ss_dssp SSBEEEEEEESGGGCEEEEEEBC
T ss_pred CCCceEEEEeCCCCCEEEEEcCC
Confidence 6789999998 898888877754
|
| >3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482} | Back alignment and structure |
|---|
Probab=99.42 E-value=1.1e-10 Score=131.40 Aligned_cols=232 Identities=9% Similarity=0.037 Sum_probs=164.1
Q ss_pred CCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCC--eEEEEEcCCCCcee
Q 003236 556 SKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADR--TVRVWDTENPDYSL 633 (837)
Q Consensus 556 ~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg--~I~IWDl~~~~~~~ 633 (837)
.....|+|+++++++++...++.|++||.+++......... .... ++|++++..|+++..++ .|.+|+...... .
T Consensus 131 ~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~~-~~~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~-~ 207 (409)
T 3hrp_A 131 KYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHPGF-KGGK-PAVTKDKQRVYSIGWEGTHTVYVYMKASGWA-P 207 (409)
T ss_dssp CCEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEEETC-CBCB-CEECTTSSEEEEEBSSTTCEEEEEEGGGTTC-E
T ss_pred CCceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEeeccC-CCCc-eeEecCCCcEEEEecCCCceEEEEEcCCCce-e
Confidence 46789999999998887777899999999988777665443 3334 99999999999988866 899999876543 2
Q ss_pred EEe----eccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeeE----EecCCCe--e-EEEEecCCCEEEEEEc
Q 003236 634 RTF----TGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGV----FKCQSGA--T-QMRFQPRLGRILAAAI 702 (837)
Q Consensus 634 ~~~----~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~----~~~~~~i--~-sl~~sp~g~~llags~ 702 (837)
..+ ......+.+++++|++..+++ +..++.|+.||..++..... ....... . .++|+|+++.|+++..
T Consensus 208 ~~~g~~~~~~~~~p~~iav~p~~g~lyv-~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~ 286 (409)
T 3hrp_A 208 TRIGQLGSTFSGKIGAVALDETEEWLYF-VDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQ 286 (409)
T ss_dssp EEEEECCTTSCSCCCBCEECTTSSEEEE-ECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEEEEEET
T ss_pred EEeeeccchhcCCcEEEEEeCCCCeEEE-EECCCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCEEEEEeC
Confidence 222 224567889999996566665 66688999999987764332 1111222 2 9999997667666654
Q ss_pred -CCeEEEEECCCCeEEEEEcCCC---------------CCEEEEEEcCCCCEEEEEe--CCeEEEEEcCCCCCceeEEEe
Q 003236 703 -ENYISILDVETQVCRLKLQGHK---------------NQVHSVCWNTSGEYLASVS--DELVRVWSIGSGSKGECIHEL 764 (837)
Q Consensus 703 -dg~I~iwDl~s~~~~~~l~~h~---------------~~V~sl~~spdg~~Lasgs--Dg~I~IwDl~s~~~~~~i~~~ 764 (837)
.+.|+.||.... +..+.++. .....++++++|.++++-. ++.|++|++.++ . +..+
T Consensus 287 ~~~~I~~~~~~g~--~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G---~-v~~~ 360 (409)
T 3hrp_A 287 NLSSVYKITPDGE--CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDG---Y-VSTV 360 (409)
T ss_dssp TTTEEEEECTTCC--EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTTT---E-EEEE
T ss_pred CCCEEEEEecCCC--EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCC---E-EEEE
Confidence 688999998754 22332222 4588999999999777654 569999997665 2 3333
Q ss_pred ecC---------------CCceEEEEEeCCCCEEEEEEcCCeEEEEEC
Q 003236 765 SCT---------------GNKFHSCVFHPTFPSLLVIGCYETLELWNM 797 (837)
Q Consensus 765 ~~~---------------~~~I~sv~fspdg~~L~sgs~dg~I~IwDl 797 (837)
.++ -.....+++++++..+++-..++.|+.+++
T Consensus 361 ~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i~~ 408 (409)
T 3hrp_A 361 AGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRKYAV 408 (409)
T ss_dssp EECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEEEEEE
T ss_pred eCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEEEEEe
Confidence 332 245788999999765555556668887765
|
| >2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.42 E-value=5.4e-12 Score=138.42 Aligned_cols=259 Identities=9% Similarity=-0.000 Sum_probs=170.2
Q ss_pred CCeEEEEEcCCCCEEEEEE--CCCcEEEEeCCCCeEEEEe-------ccCCCCeEEEEEcCCCCEEEEEeC-----CCeE
Q 003236 556 SKVESCHFSPDGKLLATGG--HDKKAVLWCTESFTVKSTL-------EEHTQWITDVRFSPSLSRLATSSA-----DRTV 621 (837)
Q Consensus 556 ~~V~sl~fSpdg~~Lasgs--~Dg~I~VWd~~t~~~~~~l-------~~h~~~I~~l~fspdg~~Latgs~-----Dg~I 621 (837)
..+..|+++++|+++++.. .++.++||.+.+++.. .+ ..|-..+.+++|+++++++++-.. ++.|
T Consensus 17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g~~~-~~p~~~~~~~~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i 95 (343)
T 2qe8_A 17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQDGLI-PFPPQSGNAIITFDTVLGIKSDGNGIVWMLDNGNQSKSVPKL 95 (343)
T ss_dssp SCEEEEEECTTSCEEEEECGGGCCSCSEEEEETTEEE-ESCCCCSSCCCCCSCEEEEEECSSSEEEEEECHHHHTSCCEE
T ss_pred CCcceEEECCCCCEEEEeCCCCCCceEEEEECCCCee-cCCCcccCcccceeEeeEEEEcCCCcEEEEcCCCCcCCCCeE
Confidence 6789999999999988864 2343555554455433 22 234568999999999876665443 5789
Q ss_pred EEEEcCCCCceeEEeec------cccceEEEEEcCCCCeEEEEEe---CCCcEEEEECCCCeeeeEEecCCCee--EEEE
Q 003236 622 RVWDTENPDYSLRTFTG------HSTTVMSLDFHPSKEDLLCSCD---NNSEIRYWSINNGSCAGVFKCQSGAT--QMRF 690 (837)
Q Consensus 622 ~IWDl~~~~~~~~~~~~------h~~~V~sl~fspdg~~llasgs---~Dg~I~vwDl~t~~~i~~~~~~~~i~--sl~~ 690 (837)
.+||+.+++. +..+.. +...+..+++++++..++++.. .++.|.+||+.+++..+.+..+.... ...+
T Consensus 96 ~~~d~~tg~~-~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~~~~~~~~~~~ 174 (343)
T 2qe8_A 96 VAWDTLNNQL-SRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQGYPGIAPEDIDL 174 (343)
T ss_dssp EEEETTTTEE-EEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEECTTCTTTSCCSCCC
T ss_pred EEEECCCCeE-EEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEecCCCcccccccce
Confidence 9999987663 333322 2245689999987666766665 67899999999888766553211110 1344
Q ss_pred ecCCCEEEEEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEe-CC-eEEEEEcC---CCCC--ce---e
Q 003236 691 QPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DE-LVRVWSIG---SGSK--GE---C 760 (837)
Q Consensus 691 sp~g~~llags~dg~I~iwDl~s~~~~~~l~~h~~~V~sl~~spdg~~Lasgs-Dg-~I~IwDl~---s~~~--~~---~ 760 (837)
.+++..+.+...++.+..|. ..+..|+|+|+++.|+++. ++ .|..++.. .+.. .. .
T Consensus 175 ~~~g~~~~~~~~~g~~~~~~--------------~~~~gia~s~dg~~ly~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 240 (343)
T 2qe8_A 175 VIDGVPVQIGQPDGTVIRPH--------------LGVNGIVLDAENEWLYLSPMHSTSMYRIKSADLSNLQLTDAELGSK 240 (343)
T ss_dssp EETTEECBEECTTSCEECCC--------------CCEEEEEECTTSCEEEEEESSCSEEEEEEHHHHTCTTCCHHHHHTT
T ss_pred eECCEEEEeccCCCceecee--------------cccceeEeccCCCEEEEEeCCCCeEEEEEHHHhcCCCCChhhhhcc
Confidence 45555555566666665442 2467899999999888877 44 55555532 1100 00 0
Q ss_pred EEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEEEecc--CCCCeeEEEEeCCCCEEEEEECCC
Q 003236 761 IHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSA--HDKLVSSLAASTVNGMVASASHDK 831 (837)
Q Consensus 761 i~~~~~~~~~I~sv~fspdg~~L~sgs~dg~I~IwDl~s~~~~~l~~--h~~~V~sla~spdg~~LaSgs~DG 831 (837)
+.. .++......++++++|..+++...++.|.+||..+++...+.. +...+.+|+|.+++.++++.+..+
T Consensus 241 ~~~-~g~~g~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~~~~~~~~~~~~~p~~va~~~~g~l~v~~~~~~ 312 (343)
T 2qe8_A 241 IER-YSEKPICDGISIDKDHNIYVGDLAHSAIGVITSADRAYKLLVTDEKLSWTDSFNFGSDGYLYFDCNQLH 312 (343)
T ss_dssp CEE-EEECCSCSCEEECTTCCEEEEEGGGTEEEEEETTTTEEEEEEECGGGSCEEEEEECTTSCEEEEECCGG
T ss_pred eEe-cccCCCCceEEECCCCCEEEEccCCCeEEEEECCCCCEEEEEECCceecCCeeEECCCCcEEEEeCccc
Confidence 111 1223345678999999877777778899999986666543332 345689999999998888876443
|
| >2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1 | Back alignment and structure |
|---|
Probab=99.41 E-value=4.5e-10 Score=122.20 Aligned_cols=221 Identities=15% Similarity=0.090 Sum_probs=154.5
Q ss_pred eEEEEEcCCCC-EEEEEECCCcEEEEeCCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeEEe
Q 003236 558 VESCHFSPDGK-LLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTF 636 (837)
Q Consensus 558 V~sl~fSpdg~-~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~~~~~~~~~ 636 (837)
..+++|++++. ++++...++.|.+||..+++... +. ....|.+++|+++++++++. .+ .|.+||..+++.. .+
T Consensus 51 ~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~~-~~-~~~~v~~i~~~~dg~l~v~~-~~-gl~~~d~~~g~~~--~~ 124 (326)
T 2ghs_A 51 GEGPTFDPASGTAWWFNILERELHELHLASGRKTV-HA-LPFMGSALAKISDSKQLIAS-DD-GLFLRDTATGVLT--LH 124 (326)
T ss_dssp EEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEEE-EE-CSSCEEEEEEEETTEEEEEE-TT-EEEEEETTTCCEE--EE
T ss_pred CcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEEE-EE-CCCcceEEEEeCCCeEEEEE-CC-CEEEEECCCCcEE--EE
Confidence 56789999754 56666678899999998876543 32 34679999999999877654 44 4999999876632 22
Q ss_pred ecc-----ccceEEEEEcCCCCeEEEEEeC-----CCcEEEEECCCCeeeeEEecCCCeeEEEEecCCCEEEEEEc-CCe
Q 003236 637 TGH-----STTVMSLDFHPSKEDLLCSCDN-----NSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAI-ENY 705 (837)
Q Consensus 637 ~~h-----~~~V~sl~fspdg~~llasgs~-----Dg~I~vwDl~t~~~i~~~~~~~~i~sl~~sp~g~~llags~-dg~ 705 (837)
... ...+.+++++|+|..++.+.+. .+.|+.++ +++.............++|+++++.++++.. ++.
T Consensus 125 ~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~~~~~~~~~~~~i~~s~dg~~lyv~~~~~~~ 202 (326)
T 2ghs_A 125 AELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKVTKLFADISIPNSICFSPDGTTGYFVDTKVNR 202 (326)
T ss_dssp ECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEEEEEEEEESSEEEEEECTTSCEEEEEETTTCE
T ss_pred eeCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcEEEeeCCCcccCCeEEcCCCCEEEEEECCCCE
Confidence 211 2468899999998744432221 24666666 5655444333345778999999988777654 689
Q ss_pred EEEEECC--CC-e-----EEEEEcCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEE
Q 003236 706 ISILDVE--TQ-V-----CRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVF 776 (837)
Q Consensus 706 I~iwDl~--s~-~-----~~~~l~~h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~f 776 (837)
|.+||+. ++ . ....+......+.+++++++|.++++.. ++.|.+||. ++ ..+..+......+.+++|
T Consensus 203 I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~-~g---~~~~~i~~~~~~~~~~af 278 (326)
T 2ghs_A 203 LMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDT-DG---NHIARYEVPGKQTTCPAF 278 (326)
T ss_dssp EEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECT-TC---CEEEEEECSCSBEEEEEE
T ss_pred EEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEeCCCEEEEECC-CC---CEEEEEECCCCCcEEEEE
Confidence 9999986 55 2 2333333445678999999999887776 678999998 34 455556666667999999
Q ss_pred e-CCCCEEEEEEcCC
Q 003236 777 H-PTFPSLLVIGCYE 790 (837)
Q Consensus 777 s-pdg~~L~sgs~dg 790 (837)
+ +++..|++++..+
T Consensus 279 ~g~d~~~L~vt~~~~ 293 (326)
T 2ghs_A 279 IGPDASRLLVTSARE 293 (326)
T ss_dssp ESTTSCEEEEEEBCT
T ss_pred ecCCCCEEEEEecCC
Confidence 8 8888887776544
|
| >3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus} | Back alignment and structure |
|---|
Probab=99.38 E-value=4.8e-11 Score=134.50 Aligned_cols=247 Identities=13% Similarity=0.172 Sum_probs=173.0
Q ss_pred EEEecCCCCCeEEEEEcCCCCEEEEEE----------CCCcEEEEeCCCCeEEEEeccC-------CCCeEEEEEcCCCC
Q 003236 548 FQLIPASTSKVESCHFSPDGKLLATGG----------HDKKAVLWCTESFTVKSTLEEH-------TQWITDVRFSPSLS 610 (837)
Q Consensus 548 ~~~l~~H~~~V~sl~fSpdg~~Lasgs----------~Dg~I~VWd~~t~~~~~~l~~h-------~~~I~~l~fspdg~ 610 (837)
+..+..-..+ .++++|||++|+++. .++.|.++|..+++.+..+... ......+.|+||++
T Consensus 112 v~~I~vG~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~r~~~g~~P~~~~~spDGk 189 (426)
T 3c75_H 112 LGMTDGGFLP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDAPRFLVGTYQWMNALTPDNK 189 (426)
T ss_dssp EEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGSEECTTSS
T ss_pred EEEEECCCCC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCccccccCCCcceEEEcCCCC
Confidence 3444433344 799999999888775 4678999999999998877422 23456789999999
Q ss_pred EEEEEeC--CCeEEEEEcCCCCceeEEeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeeE----EecCC-
Q 003236 611 RLATSSA--DRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGV----FKCQS- 683 (837)
Q Consensus 611 ~Latgs~--Dg~I~IWDl~~~~~~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~----~~~~~- 683 (837)
+|+++.. ++.|.+.|+.+.+. +..+.-.. +....|++...+++.+.||.+.+.++.+++.... +....
T Consensus 190 ~lyV~n~~~~~~VsVID~~t~kv-v~~I~v~g----~~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v~~~~~~~~~v~~~ 264 (426)
T 3c75_H 190 NLLFYQFSPAPAVGVVDLEGKTF-DRMLDVPD----CYHIFPASPTVFYMNCRDGSLARVDFADGETKVTNTEVFHTEDE 264 (426)
T ss_dssp EEEEEECSSSCEEEEEETTTTEE-EEEEECCS----EEEEEEEETTEEEEEETTSSEEEEECCTTCCEEEECCCCSCTTS
T ss_pred EEEEEecCCCCeEEEEECCCCeE-EEEEEcCC----ceeeccCCCcEEEEEcCCCCEEEEECCCCcEEEEeeeeeccCCC
Confidence 9999875 57899999998764 44443211 1334455555666777788888888866665532 11111
Q ss_pred C-eeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEE--EEcC----------CCCCEEEEEEcCCCCEEEEEe-------
Q 003236 684 G-ATQMRFQPRLGRILAAAIENYISILDVETQVCRL--KLQG----------HKNQVHSVCWNTSGEYLASVS------- 743 (837)
Q Consensus 684 ~-i~sl~~sp~g~~llags~dg~I~iwDl~s~~~~~--~l~~----------h~~~V~sl~~spdg~~Lasgs------- 743 (837)
. ...+.|.+++..++.....+.|.++|+....... .+.. .......+++++++..+++..
T Consensus 265 p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gt 344 (426)
T 3c75_H 265 LLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWK 344 (426)
T ss_dssp CBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTC
T ss_pred ceeeEeeecCCCCEEEEEeCCCcEEEEeccCCceEEeeeeeeccccccccccccCCceeeEEcCCCCEEEEEeccccccc
Confidence 1 1245678999988888888999999997654321 1110 011122368999988777654
Q ss_pred ----CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCC-EEEEEE-cCCeEEEEECCCCcEEEe
Q 003236 744 ----DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFP-SLLVIG-CYETLELWNMTENKTLTL 805 (837)
Q Consensus 744 ----Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fspdg~-~L~sgs-~dg~I~IwDl~s~~~~~l 805 (837)
++.|.++|+.+. +.+..+.. +.....++|+||++ .+++.. .++.|.++|+.+++.+..
T Consensus 345 hk~~s~~VsVID~~T~---kvv~~I~v-g~~P~gia~spDg~~~lyv~n~~s~~VsVID~~t~kvv~t 408 (426)
T 3c75_H 345 HKAASRFVVVLNAETG---ERINKIEL-GHEIDSINVSQDAEPLLYALSAGTQTLHIYDAATGEELRS 408 (426)
T ss_dssp TTSCEEEEEEEETTTC---CEEEEEEE-EEEECEEEECCSSSCEEEEEETTTTEEEEEETTTCCEEEE
T ss_pred ccCCCCEEEEEECCCC---eEEEEEEC-CCCcCeEEEccCCCEEEEEEcCCCCeEEEEECCCCCEEEE
Confidence 247999999988 55555543 23578899999999 888888 488999999999998844
|
| >3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=99.37 E-value=1.1e-10 Score=125.57 Aligned_cols=234 Identities=11% Similarity=0.114 Sum_probs=161.2
Q ss_pred EEecCCCCCeEEEEEcCCCC-EEEEEECCCcEEEEeCCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcC
Q 003236 549 QLIPASTSKVESCHFSPDGK-LLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTE 627 (837)
Q Consensus 549 ~~l~~H~~~V~sl~fSpdg~-~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~ 627 (837)
..+..+........|+++|+ +++++..++.|..|+. +++ ...+..+...+..++++++|+++++...++.|.+|+.+
T Consensus 38 ~~l~~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~-~g~-~~~~~~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~ 115 (305)
T 3dr2_A 38 LTLYDQATWSEGPAWWEAQRTLVWSDLVGRRVLGWRE-DGT-VDVLLDATAFTNGNAVDAQQRLVHCEHGRRAITRSDAD 115 (305)
T ss_dssp EEEECCCSSEEEEEEEGGGTEEEEEETTTTEEEEEET-TSC-EEEEEESCSCEEEEEECTTSCEEEEETTTTEEEEECTT
T ss_pred EEEecCCcCccCCeEeCCCCEEEEEECCCCEEEEEeC-CCC-EEEEeCCCCccceeeECCCCCEEEEECCCCEEEEECCC
Confidence 33444555678899999998 5667777899999997 444 34455566789999999999966665566889999986
Q ss_pred CCCceeEEeecc-----ccceEEEEEcCCCCeEEEE----EeC-------------CCcEEEEECCCCeeeeEEecCCCe
Q 003236 628 NPDYSLRTFTGH-----STTVMSLDFHPSKEDLLCS----CDN-------------NSEIRYWSINNGSCAGVFKCQSGA 685 (837)
Q Consensus 628 ~~~~~~~~~~~h-----~~~V~sl~fspdg~~llas----gs~-------------Dg~I~vwDl~t~~~i~~~~~~~~i 685 (837)
+.. ..+..+ ...+.+++++++|. ++++ +.. .+.|+.||..+++..... .....
T Consensus 116 -g~~--~~~~~~~~~~~~~~~~~i~~d~dG~-l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~-~~~~p 190 (305)
T 3dr2_A 116 -GQA--HLLVGRYAGKRLNSPNDLIVARDGA-IWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA-DLDHP 190 (305)
T ss_dssp -SCE--EEEECEETTEECSCCCCEEECTTSC-EEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE-EESSE
T ss_pred -CCE--EEEEeccCCCccCCCCCEEECCCCC-EEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe-cCCCC
Confidence 442 222211 13467899999987 4444 221 256888888777655544 44567
Q ss_pred eEEEEecCCCEEEEEEcC------CeEEEEECCCCeE--EEEE-cCCCCCEEEEEEcCCCCEEEEEeCCeEEEEEcCCCC
Q 003236 686 TQMRFQPRLGRILAAAIE------NYISILDVETQVC--RLKL-QGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGS 756 (837)
Q Consensus 686 ~sl~~sp~g~~llags~d------g~I~iwDl~s~~~--~~~l-~~h~~~V~sl~~spdg~~LasgsDg~I~IwDl~s~~ 756 (837)
..++|+|+++.|+++... +.|.+||+..... ...+ ......+..++++++|+++++. .+.|.+|+.. +
T Consensus 191 ~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~pdgi~~d~~G~lwv~~-~~gv~~~~~~-g- 267 (305)
T 3dr2_A 191 NGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPDGLPDGFCVDRGGWLWSSS-GTGVCVFDSD-G- 267 (305)
T ss_dssp EEEEECTTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECCSSSCCCSEEECTTSCEEECC-SSEEEEECTT-S-
T ss_pred cceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECCCCCCCeEEECCCCCEEEec-CCcEEEECCC-C-
Confidence 789999999988888775 7899999876531 1111 1123445678999999965554 4459999974 3
Q ss_pred CceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEE
Q 003236 757 KGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWN 796 (837)
Q Consensus 757 ~~~~i~~~~~~~~~I~sv~fspdg~~L~sgs~dg~I~IwD 796 (837)
..+..+.... .+.+++|.++++.|++++.++ |+.++
T Consensus 268 --~~~~~~~~~~-~~~~~~f~~d~~~L~it~~~~-l~~~~ 303 (305)
T 3dr2_A 268 --QLLGHIPTPG-TASNCTFDQAQQRLFITGGPC-LWMLP 303 (305)
T ss_dssp --CEEEEEECSS-CCCEEEECTTSCEEEEEETTE-EEEEE
T ss_pred --CEEEEEECCC-ceeEEEEeCCCCEEEEEcCCe-EEEEE
Confidence 3455554444 588899999999888888764 44444
|
| >3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=99.37 E-value=9.6e-11 Score=125.95 Aligned_cols=234 Identities=6% Similarity=0.001 Sum_probs=158.9
Q ss_pred EEeccCCCCeEEEEEcCCCC-EEEEEeCCCeEEEEEcCCCCceeEEeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEE
Q 003236 591 STLEEHTQWITDVRFSPSLS-RLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWS 669 (837)
Q Consensus 591 ~~l~~h~~~I~~l~fspdg~-~Latgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwD 669 (837)
..+...........|+++++ ++++...++.|..|+.. +. ...+..+...+.+++++++|. ++++...++.|.+|+
T Consensus 38 ~~l~~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~~-g~--~~~~~~~~~~~~gl~~d~dG~-l~v~~~~~~~v~~~~ 113 (305)
T 3dr2_A 38 LTLYDQATWSEGPAWWEAQRTLVWSDLVGRRVLGWRED-GT--VDVLLDATAFTNGNAVDAQQR-LVHCEHGRRAITRSD 113 (305)
T ss_dssp EEEECCCSSEEEEEEEGGGTEEEEEETTTTEEEEEETT-SC--EEEEEESCSCEEEEEECTTSC-EEEEETTTTEEEEEC
T ss_pred EEEecCCcCccCCeEeCCCCEEEEEECCCCEEEEEeCC-CC--EEEEeCCCCccceeeECCCCC-EEEEECCCCEEEEEC
Confidence 34444556778999999998 56666678999999984 33 445555667899999999987 554544567899999
Q ss_pred CCCCeeeeEEec-----CCCeeEEEEecCCCEEEE----EEc-------------CCeEEEEECCCCeEEEEEcCCCCCE
Q 003236 670 INNGSCAGVFKC-----QSGATQMRFQPRLGRILA----AAI-------------ENYISILDVETQVCRLKLQGHKNQV 727 (837)
Q Consensus 670 l~t~~~i~~~~~-----~~~i~sl~~sp~g~~lla----gs~-------------dg~I~iwDl~s~~~~~~l~~h~~~V 727 (837)
.. ++....... ...+..+++.++|..+++ +.. .+.|+.||..+++..... .....
T Consensus 114 ~~-g~~~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~--~~~~p 190 (305)
T 3dr2_A 114 AD-GQAHLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA--DLDHP 190 (305)
T ss_dssp TT-SCEEEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE--EESSE
T ss_pred CC-CCEEEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe--cCCCC
Confidence 86 554332221 134678999999887765 221 256888888766544333 33567
Q ss_pred EEEEEcCCCCEEEEEe-C------CeEEEEEcCCCCCceeEEEe-ecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCC
Q 003236 728 HSVCWNTSGEYLASVS-D------ELVRVWSIGSGSKGECIHEL-SCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTE 799 (837)
Q Consensus 728 ~sl~~spdg~~Lasgs-D------g~I~IwDl~s~~~~~~i~~~-~~~~~~I~sv~fspdg~~L~sgs~dg~I~IwDl~s 799 (837)
..++|+||++.|+++. . +.|.+|++.... ......+ .........++++++|. |++++. +.|.+||...
T Consensus 191 ~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~-l~~~~~~~~~~~~~pdgi~~d~~G~-lwv~~~-~gv~~~~~~g 267 (305)
T 3dr2_A 191 NGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGA-LHDRRHFASVPDGLPDGFCVDRGGW-LWSSSG-TGVCVFDSDG 267 (305)
T ss_dssp EEEEECTTSSEEEEEECCC---CCCEEEEEEEETTE-EEEEEEEECCSSSCCCSEEECTTSC-EEECCS-SEEEEECTTS
T ss_pred cceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCC-ccCCeEEEECCCCCCCeEEECCCCC-EEEecC-CcEEEECCCC
Confidence 8899999999777766 4 689999987642 1111111 11234456789999998 555554 4599999854
Q ss_pred CcEEEeccCCCCeeEEEEeCCCCEEEEEECCCcEEE
Q 003236 800 NKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKI 835 (837)
Q Consensus 800 ~~~~~l~~h~~~V~sla~spdg~~LaSgs~DG~I~I 835 (837)
.....+..+. .+.+++|+++++.|+.++.++..++
T Consensus 268 ~~~~~~~~~~-~~~~~~f~~d~~~L~it~~~~l~~~ 302 (305)
T 3dr2_A 268 QLLGHIPTPG-TASNCTFDQAQQRLFITGGPCLWML 302 (305)
T ss_dssp CEEEEEECSS-CCCEEEECTTSCEEEEEETTEEEEE
T ss_pred CEEEEEECCC-ceeEEEEeCCCCEEEEEcCCeEEEE
Confidence 4333444443 6899999999998888888765554
|
| >2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1 | Back alignment and structure |
|---|
Probab=99.36 E-value=7.4e-10 Score=120.47 Aligned_cols=221 Identities=9% Similarity=0.019 Sum_probs=150.4
Q ss_pred CeEEEEEcCCC-CEEEEEeCCCeEEEEEcCCCCceeEEeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeee
Q 003236 599 WITDVRFSPSL-SRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAG 677 (837)
Q Consensus 599 ~I~~l~fspdg-~~Latgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~ 677 (837)
...+++|++++ .++++...++.|.+||..++.. ..+. ....+.+++|++++. +++++ +..|.+||..+++...
T Consensus 50 ~~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~--~~~~-~~~~v~~i~~~~dg~-l~v~~--~~gl~~~d~~~g~~~~ 123 (326)
T 2ghs_A 50 LGEGPTFDPASGTAWWFNILERELHELHLASGRK--TVHA-LPFMGSALAKISDSK-QLIAS--DDGLFLRDTATGVLTL 123 (326)
T ss_dssp BEEEEEEETTTTEEEEEEGGGTEEEEEETTTTEE--EEEE-CSSCEEEEEEEETTE-EEEEE--TTEEEEEETTTCCEEE
T ss_pred CCcCCeEeCCCCEEEEEECCCCEEEEEECCCCcE--EEEE-CCCcceEEEEeCCCe-EEEEE--CCCEEEEECCCCcEEE
Confidence 45678899974 4556666788999999987543 2232 346799999999976 44343 3459999998887654
Q ss_pred EEecC-----CCeeEEEEecCCCEEEEEEc------CCeEEEEECCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEe--C
Q 003236 678 VFKCQ-----SGATQMRFQPRLGRILAAAI------ENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS--D 744 (837)
Q Consensus 678 ~~~~~-----~~i~sl~~sp~g~~llags~------dg~I~iwDl~s~~~~~~l~~h~~~V~sl~~spdg~~Lasgs--D 744 (837)
..... ..+..++++++++.+++... .+.|..+| +++... +..+......++|+|+++.|+.+. +
T Consensus 124 ~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~~-~~~~~~~~~~i~~s~dg~~lyv~~~~~ 200 (326)
T 2ghs_A 124 HAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKVTK-LFADISIPNSICFSPDGTTGYFVDTKV 200 (326)
T ss_dssp EECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEEEE-EEEEESSEEEEEECTTSCEEEEEETTT
T ss_pred EeeCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcEEE-eeCCCcccCCeEEcCCCCEEEEEECCC
Confidence 43321 24788999999886655443 25677777 454433 222334678999999998776655 6
Q ss_pred CeEEEEEcC--CC-CC--ceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE-EeccCCCCeeEEEEe
Q 003236 745 ELVRVWSIG--SG-SK--GECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAAS 818 (837)
Q Consensus 745 g~I~IwDl~--s~-~~--~~~i~~~~~~~~~I~sv~fspdg~~L~sgs~dg~I~IwDl~s~~~~-~l~~h~~~V~sla~s 818 (837)
+.|.+||+. ++ .. ...+..+.........++++++|..+++...++.|.+||. +++.+ .+..+...+++++|+
T Consensus 201 ~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~-~g~~~~~i~~~~~~~~~~af~ 279 (326)
T 2ghs_A 201 NRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDT-DGNHIARYEVPGKQTTCPAFI 279 (326)
T ss_dssp CEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECT-TCCEEEEEECSCSBEEEEEEE
T ss_pred CEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEeCCCEEEEECC-CCCEEEEEECCCCCcEEEEEe
Confidence 799999986 44 21 1223333333456788999999986666656789999998 45544 555566679999998
Q ss_pred -CCCCEEEEEEC
Q 003236 819 -TVNGMVASASH 829 (837)
Q Consensus 819 -pdg~~LaSgs~ 829 (837)
++++.|+.++.
T Consensus 280 g~d~~~L~vt~~ 291 (326)
T 2ghs_A 280 GPDASRLLVTSA 291 (326)
T ss_dssp STTSCEEEEEEB
T ss_pred cCCCCEEEEEec
Confidence 88876655543
|
| >1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C* | Back alignment and structure |
|---|
Probab=99.34 E-value=1.6e-11 Score=136.51 Aligned_cols=172 Identities=14% Similarity=0.122 Sum_probs=137.7
Q ss_pred CeEEEEEcCCCCEEEEEECCCcEEEEeCCCCe-----------EEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEE
Q 003236 557 KVESCHFSPDGKLLATGGHDKKAVLWCTESFT-----------VKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWD 625 (837)
Q Consensus 557 ~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~-----------~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWD 625 (837)
.++.+++++...+|++|+.++ ++||+++... ....+ .+.. |+.|+| |+++|+++ .++.|++||
T Consensus 39 ~~nlLais~~~gll~a~~~~~-l~v~~~~~l~~~~~~~~~~~~~~~~~-~lp~-V~~l~f--d~~~L~v~-~~~~l~v~d 112 (388)
T 1xip_A 39 SLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWEK-EIPD-VIFVCF--HGDQVLVS-TRNALYSLD 112 (388)
T ss_dssp CCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEEE-ECTT-EEEEEE--ETTEEEEE-ESSEEEEEE
T ss_pred cccEEEEcCCCCEEEEeCCCE-EEEEEhhHhhhhhccccccccceEEe-eCCC-eeEEEE--CCCEEEEE-cCCcEEEEE
Confidence 589999999999999999874 6669865332 11222 3566 999999 89999999 889999999
Q ss_pred cCCCCceeEEeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeeEEecCCCeeEEEEecCCCEEEEEEcCCe
Q 003236 626 TENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENY 705 (837)
Q Consensus 626 l~~~~~~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~~~~i~sl~~sp~g~~llags~dg~ 705 (837)
+.+... ......|...|.++.+.+.. ++++..||.|.+||+.++.... ....|.|++|+|+| ++++..||.
T Consensus 113 v~sl~~-~~~~~~~~~~v~~i~~~~p~---~av~~~dG~L~v~dl~~~~~~~---~~~~Vs~v~WSpkG--~~vg~~dg~ 183 (388)
T 1xip_A 113 LEELSE-FRTVTSFEKPVFQLKNVNNT---LVILNSVNDLSALDLRTKSTKQ---LAQNVTSFDVTNSQ--LAVLLKDRS 183 (388)
T ss_dssp SSSTTC-EEEEEECSSCEEEEEECSSE---EEEEETTSEEEEEETTTCCEEE---EEESEEEEEECSSE--EEEEETTSC
T ss_pred chhhhc-cCccceeecceeeEEecCCC---EEEEECCCCEEEEEccCCcccc---ccCCceEEEEcCCc--eEEEEcCCc
Confidence 987553 45566677788888877542 6678889999999999887654 34689999999998 788999999
Q ss_pred EEEEECCCCeE--EEEE------c---CCCCCEEEEEEcCCCCEEEEEe
Q 003236 706 ISILDVETQVC--RLKL------Q---GHKNQVHSVCWNTSGEYLASVS 743 (837)
Q Consensus 706 I~iwDl~s~~~--~~~l------~---~h~~~V~sl~~spdg~~Lasgs 743 (837)
|++|+...... ..++ . +|...|.+|+|.+++.++++-.
T Consensus 184 i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~y~ 232 (388)
T 1xip_A 184 FQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVFG 232 (388)
T ss_dssp EEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEEE
T ss_pred EEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEEEc
Confidence 99999988775 5566 3 3778999999999999988743
|
| >1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1 | Back alignment and structure |
|---|
Probab=99.32 E-value=2.1e-11 Score=135.09 Aligned_cols=254 Identities=11% Similarity=0.054 Sum_probs=172.2
Q ss_pred EEEecCCCCCeEEEEEcCCCCEEEEEE----------CCCcEEEEeCCCCeEEEEeccC-------CCCeEEEEEcCCCC
Q 003236 548 FQLIPASTSKVESCHFSPDGKLLATGG----------HDKKAVLWCTESFTVKSTLEEH-------TQWITDVRFSPSLS 610 (837)
Q Consensus 548 ~~~l~~H~~~V~sl~fSpdg~~Lasgs----------~Dg~I~VWd~~t~~~~~~l~~h-------~~~I~~l~fspdg~ 610 (837)
+..+.....+ .+.|+|||++|+++. .++.|.+||+.+++.+.++..+ ......++|+|||+
T Consensus 59 ~~~i~vG~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~g~~P~~ia~SpDGk 136 (368)
T 1mda_H 59 LGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSA 136 (368)
T ss_dssp EEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSS
T ss_pred EEEEeCCCCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccccCCCcceEEEcCCCC
Confidence 4444444445 799999999988886 3689999999999999988643 13467899999999
Q ss_pred EEEEEeC--CCeEEE--EEcCCCCceeEEeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCC-----Ceeee----
Q 003236 611 RLATSSA--DRTVRV--WDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN-----GSCAG---- 677 (837)
Q Consensus 611 ~Latgs~--Dg~I~I--WDl~~~~~~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t-----~~~i~---- 677 (837)
+|+++.. +..|.+ +|+.+ +..+... + |+.+.|++...+++.+.|+.+.+.|+.+ ++.+.
T Consensus 137 ~lyVan~~~~~~v~V~~iD~~t----v~~i~v~-~---~~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~~~~~v~~~~t~ 208 (368)
T 1mda_H 137 CLLFFLFGSSAAAGLSVPGASD----DQLTKSA-S---CFHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTG 208 (368)
T ss_dssp CEEEEECSSSCEEEEEETTTEE----EEEEECS-S---CCCCEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCT
T ss_pred EEEEEccCCCCeEEEEEEchhh----ceEEECC-C---ceEEccCCCeEEEEEcCCCCEEEEECccccccCCeEEEEeee
Confidence 9999875 457888 88876 2333211 1 1223466666677777889998899986 44332
Q ss_pred EEecCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCC--eEEEEEcCC----------CCCEEEEEEcCCCCEEEEEe--
Q 003236 678 VFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQ--VCRLKLQGH----------KNQVHSVCWNTSGEYLASVS-- 743 (837)
Q Consensus 678 ~~~~~~~i~sl~~sp~g~~llags~dg~I~iwDl~s~--~~~~~l~~h----------~~~V~sl~~spdg~~Lasgs-- 743 (837)
.+....... . .++++.++..+. +.|.+.|+... +.+..+... ......++|++|++.++++.
T Consensus 209 ~i~vg~~P~--~-~~~~~~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV~~~~ 284 (368)
T 1mda_H 209 AQNCSSQAA--Q-ANYPGMLVWAVA-SSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVE 284 (368)
T ss_dssp TSCBCSCCE--E-ETTTTEEEECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEE
T ss_pred eeeCCCCcc--c-cccCCEEEEEcC-CEEEEEECCCCcceEEEEEEeccccccccccccCcceeeEEcCCCCEEEEEecc
Confidence 111111112 3 777787777777 99999999754 233222111 01112268999998877643
Q ss_pred C--------CeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEE-E-cCCeEEEEECCCCcEEEeccCCCCee
Q 003236 744 D--------ELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVI-G-CYETLELWNMTENKTLTLSAHDKLVS 813 (837)
Q Consensus 744 D--------g~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fspdg~~L~sg-s-~dg~I~IwDl~s~~~~~l~~h~~~V~ 813 (837)
. +.+.++|+.+. +.+..+... .....++|+||++.++++ . .++.|.++|+.+++.+....-.....
T Consensus 285 ~~~~~~~~~~~~~ViD~~t~---~vv~~i~vg-~~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~kvv~~I~vg~~P~ 360 (368)
T 1mda_H 285 HSRSCLAAAENTSSVTASVG---QTSGPISNG-HDSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSSVELDKGPE 360 (368)
T ss_dssp CSSCTTSCEEEEEEEESSSC---CEEECCEEE-EEECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEEEECCCCSCCC
T ss_pred ccCcccccCCCEEEEECCCC---eEEEEEECC-CCcceEEECCCCCEEEEEccCCCCeEEEEECCCCcEEEEEECCCCCC
Confidence 2 35779999988 455555432 268899999999865554 4 48999999999999986555555666
Q ss_pred EEEEeC
Q 003236 814 SLAAST 819 (837)
Q Consensus 814 sla~sp 819 (837)
.+++.+
T Consensus 361 ~i~~~~ 366 (368)
T 1mda_H 361 SLSVQN 366 (368)
T ss_dssp EEECCC
T ss_pred EEEeec
Confidence 777654
|
| >3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A | Back alignment and structure |
|---|
Probab=99.31 E-value=2.3e-09 Score=118.39 Aligned_cols=255 Identities=13% Similarity=0.077 Sum_probs=166.0
Q ss_pred CCCEEEEEECCCcEEEEeCCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeEEeeccccce--
Q 003236 566 DGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTV-- 643 (837)
Q Consensus 566 dg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V-- 643 (837)
++..|++++.++.|+.+|.++++.+................ +..+++++.++.|..+|..+++. +..+.......
T Consensus 102 ~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~p~~~--~~~v~v~~~~g~l~~~d~~tG~~-~W~~~~~~~~~~~ 178 (376)
T 3q7m_A 102 SGGHVYIGSEKAQVYALNTSDGTVAWQTKVAGEALSRPVVS--DGLVLIHTSNGQLQALNEADGAV-KWTVNLDMPSLSL 178 (376)
T ss_dssp ETTEEEEEETTSEEEEEETTTCCEEEEEECSSCCCSCCEEE--TTEEEEECTTSEEEEEETTTCCE-EEEEECCC-----
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEEeCCCceEcCCEEE--CCEEEEEcCCCeEEEEECCCCcE-EEEEeCCCCceee
Confidence 35578888899999999999999887665443322222222 45788888999999999998775 33332221110
Q ss_pred ---EEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeeEEecCCCee-----E---EEEec--CCCEEEEEEcCCeEEEEE
Q 003236 644 ---MSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGAT-----Q---MRFQP--RLGRILAAAIENYISILD 710 (837)
Q Consensus 644 ---~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~~~~i~-----s---l~~sp--~g~~llags~dg~I~iwD 710 (837)
...... +. .++.+..++.|..+|..+++.+..+....... . +...| .++.+++++.++.|..+|
T Consensus 179 ~~~~~~~~~--~~-~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~~~d 255 (376)
T 3q7m_A 179 RGESAPTTA--FG-AAVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTALD 255 (376)
T ss_dssp CCCCCCEEE--TT-EEEECCTTTEEEEEETTTCCEEEEEECCC-----------CCCCCCEEETTEEEEECTTSCEEEEE
T ss_pred cCCCCcEEE--CC-EEEEEcCCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEEECCEEEEEecCcEEEEEE
Confidence 122222 23 45567778999999999999988776432100 0 00111 357788888899999999
Q ss_pred CCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeec-CCCceEEEEEeCCCCEEEEEEc
Q 003236 711 VETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSC-TGNKFHSCVFHPTFPSLLVIGC 788 (837)
Q Consensus 711 l~s~~~~~~l~~h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~-~~~~I~sv~fspdg~~L~sgs~ 788 (837)
.++++.+..... ....++... +..|++++ ++.|..+|..++ +.+..... ....+....+. +..|++++.
T Consensus 256 ~~tG~~~w~~~~--~~~~~~~~~--~~~l~~~~~~g~l~~~d~~tG---~~~w~~~~~~~~~~~~~~~~--~~~l~v~~~ 326 (376)
T 3q7m_A 256 LRSGQIMWKREL--GSVNDFIVD--GNRIYLVDQNDRVMALTIDGG---VTLWTQSDLLHRLLTSPVLY--NGNLVVGDS 326 (376)
T ss_dssp TTTCCEEEEECC--CCEEEEEEE--TTEEEEEETTCCEEEEETTTC---CEEEEECTTTTSCCCCCEEE--TTEEEEECT
T ss_pred CCCCcEEeeccC--CCCCCceEE--CCEEEEEcCCCeEEEEECCCC---cEEEeecccCCCcccCCEEE--CCEEEEEeC
Confidence 999988877652 334455443 45555555 889999999988 44444432 12222333332 467999999
Q ss_pred CCeEEEEECCCCcEE-EeccCCCCee-EEEEeCCCCEEEEEECCCcEEEeC
Q 003236 789 YETLELWNMTENKTL-TLSAHDKLVS-SLAASTVNGMVASASHDKCVKIWK 837 (837)
Q Consensus 789 dg~I~IwDl~s~~~~-~l~~h~~~V~-sla~spdg~~LaSgs~DG~I~IWd 837 (837)
++.|++||..+++.+ ........+. ..... +..|+.++.||.|+.||
T Consensus 327 ~g~l~~~d~~tG~~~~~~~~~~~~~~~~~~~~--~~~l~v~~~~G~l~~~~ 375 (376)
T 3q7m_A 327 EGYLHWINVEDGRFVAQQKVDSSGFQTEPVAA--DGKLLIQAKDGTVYSIT 375 (376)
T ss_dssp TSEEEEEETTTCCEEEEEECCTTCBCSCCEEE--TTEEEEEBTTSCEEEEE
T ss_pred CCeEEEEECCCCcEEEEEecCCCcceeCCEEE--CCEEEEEeCCCEEEEEe
Confidence 999999999999987 3333233332 22332 56788889999999885
|
| >2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.26 E-value=8.6e-14 Score=154.75 Aligned_cols=223 Identities=14% Similarity=0.054 Sum_probs=121.8
Q ss_pred CCCEEEEEECCCcEEEEeCCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeEEeecccc-ceE
Q 003236 566 DGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHST-TVM 644 (837)
Q Consensus 566 dg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~~~~~~~~~~~h~~-~V~ 644 (837)
++..|++++.|+.|+.||..+++.+..+.. +.+.+..+..++..+++++.|+.|+.||..+++. +..+..+.. .+.
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~--~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~-~w~~~~~~~~~~~ 84 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE--DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEG-LTKLPFTIPELVQ 84 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCEEEEEEC--CCSCCCC-----CCEEECTTTCCEEEC-----CC-SEECSCCHHHHHT
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEecC--CCceecceEcCCCEEEEeCCCCEEEEEECCCCce-eeeeeccCccccc
Confidence 577899999999999999999999988865 5566666667788888888999999999987764 333322211 111
Q ss_pred -EEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeeEEecCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEcCC
Q 003236 645 -SLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGH 723 (837)
Q Consensus 645 -sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~~~~i~sl~~sp~g~~llags~dg~I~iwDl~s~~~~~~l~~h 723 (837)
+..+. .+. .+++++.++.|+.||.++|+.+..+.... ...++|+++.+++++.++.|+.||.++++.+..+..+
T Consensus 85 ~sp~~~-~~~-~v~~g~~dg~v~a~D~~tG~~~w~~~~~~---~~~~~p~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~~ 159 (369)
T 2hz6_A 85 ASPCRS-SDG-ILYMGKKQDIWYVIDLLTGEKQQTLSSAF---ADSLSPSTSLLYLGRTEYTITMYDTKTRELRWNATYF 159 (369)
T ss_dssp TCSCC-------CCCCEEEEEEEEECCC-------------------------EEEEEEEEEEECCCSSSSSCCCEEEEE
T ss_pred cCceEe-cCC-EEEEEeCCCEEEEEECCCCcEEEEecCCC---cccccccCCEEEEEecCCEEEEEECCCCCEEEeEecc
Confidence 11111 223 45577779999999999999988776543 2345678889999999999999999998766554421
Q ss_pred CCCEEEEEEcCC----CCEEEEEeCCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEE--EEcCCeEEEEEC
Q 003236 724 KNQVHSVCWNTS----GEYLASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLV--IGCYETLELWNM 797 (837)
Q Consensus 724 ~~~V~sl~~spd----g~~LasgsDg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fspdg~~L~s--gs~dg~I~IwDl 797 (837)
. ....+++.+ +.+++++.|+.|+.||..++ +.+..+......+...++++++...+. ...++.++.+|.
T Consensus 160 ~--~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG---~~~W~~~~~~pv~~~~~~~~dg~~~v~~~~~~~~~l~~ld~ 234 (369)
T 2hz6_A 160 D--YAASLPEDDVDYKMSHFVSNGDGLVVTVDSESG---DVLWIQNYASPVVAFYVWQREGLRKVMHINVAVETLRYLTF 234 (369)
T ss_dssp E--ECCBCCCCCTTCCCCEEEEETSCEEEEECTTTC---CEEEEEECSSCEEEEEECTTSSCEEECCEEEEHHHHHHHHH
T ss_pred c--ccCccccCCccccceEEEECCCCEEEEEECCCC---cEEEEecCCCceEEEEEecCCceEeccceeecccceeeeeh
Confidence 1 122333333 44444334999999999988 455555433333333445556542110 111345666666
Q ss_pred CCCc
Q 003236 798 TENK 801 (837)
Q Consensus 798 ~s~~ 801 (837)
.+++
T Consensus 235 ~tG~ 238 (369)
T 2hz6_A 235 MSGE 238 (369)
T ss_dssp HHHH
T ss_pred hcCC
Confidence 5555
|
| >1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=99.25 E-value=6.4e-10 Score=133.66 Aligned_cols=266 Identities=11% Similarity=0.096 Sum_probs=175.6
Q ss_pred CCEEEEEECCCcEEEEeCCCCeEEEEeccCCCC----------e-EEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeEE
Q 003236 567 GKLLATGGHDKKAVLWCTESFTVKSTLEEHTQW----------I-TDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRT 635 (837)
Q Consensus 567 g~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~----------I-~~l~fspdg~~Latgs~Dg~I~IWDl~~~~~~~~~ 635 (837)
+..|++++.++.|+.+|..+++.+..+..+... + ..+.+ ++..|++++.|+.|+.+|..+++..-..
T Consensus 70 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~g~v~v~~~dg~l~AlDa~TG~~~W~~ 147 (689)
T 1yiq_A 70 DGVMYTTGPFSVVYALDARDGRLIWKYDPQSDRHRAGEACCDAVNRGVAV--WKGKVYVGVLDGRLEAIDAKTGQRAWSV 147 (689)
T ss_dssp TTEEEEECGGGCEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred CCEEEEEcCCCeEEEEECCCCceeEEEcCCCCccccccccccCCCCccEE--ECCEEEEEccCCEEEEEECCCCCEeeee
Confidence 557777888899999999999999887543221 0 11222 3567888999999999999998864333
Q ss_pred eec-cccceEEEEEcC--CCCeEEEEEe-----CCCcEEEEECCCCeeeeEEecCC------------------------
Q 003236 636 FTG-HSTTVMSLDFHP--SKEDLLCSCD-----NNSEIRYWSINNGSCAGVFKCQS------------------------ 683 (837)
Q Consensus 636 ~~~-h~~~V~sl~fsp--dg~~llasgs-----~Dg~I~vwDl~t~~~i~~~~~~~------------------------ 683 (837)
... +......+...| .+..+++.++ .++.|+.||.++|+.+..+....
T Consensus 148 ~~~~~~~~~~~~~~sP~v~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~w 227 (689)
T 1yiq_A 148 DTRADHKRSYTITGAPRVVNGKVVIGNGGAEFGVRGYVTAYDAETGKEAWRFYTVPGDPKLPPEGKGMEIAAKTWFGDAY 227 (689)
T ss_dssp ECCSCTTSCCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCCSHHHHHHHTTCCSSTH
T ss_pred cCcCCCCCCccccCCcEEECCEEEEEeCCCccCCCCEEEEEECCCCcEEEEecccCCCcccccccccccccccccCCcee
Confidence 222 111111111111 1233444332 36899999999999998876310
Q ss_pred --------CeeEEEEecCCCEEEEEEcCC-------------------eEEEEECCCCeEEEEEcC--CC-------CCE
Q 003236 684 --------GATQMRFQPRLGRILAAAIEN-------------------YISILDVETQVCRLKLQG--HK-------NQV 727 (837)
Q Consensus 684 --------~i~sl~~sp~g~~llags~dg-------------------~I~iwDl~s~~~~~~l~~--h~-------~~V 727 (837)
....+.++++.+.++++..++ .|..||.++++.+..+.. |. ..+
T Consensus 228 ~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~~ 307 (689)
T 1yiq_A 228 VEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDAWDYTATQHM 307 (689)
T ss_dssp HHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCCSCCCCCSCE
T ss_pred eecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEeeecCCcccccccCCCCc
Confidence 012578899889999888775 399999999999988764 22 122
Q ss_pred EEEEEcCCCC---EEEEEe-CCeEEEEEcCCCCCceeEEEeecCC-----------------------------------
Q 003236 728 HSVCWNTSGE---YLASVS-DELVRVWSIGSGSKGECIHELSCTG----------------------------------- 768 (837)
Q Consensus 728 ~sl~~spdg~---~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~----------------------------------- 768 (837)
.......+|+ +|+.++ +|.|+++|..+++ .+.......
T Consensus 308 ~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~---~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~ 384 (689)
T 1yiq_A 308 ILAELPIDGKPRKVLMQAPKNGFFYVIDRATGE---LLSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLVTPA 384 (689)
T ss_dssp EEEEEEETTEEEEEEEECCTTSEEEEEETTTCC---EEEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEESSC
T ss_pred EEEeeccCCcEEEEEEEECCCCeEEEEECCCCC---EeccccccccccccccCccCCCcccchhhccccCCCCeeEeCCC
Confidence 2223333564 677777 9999999999984 332111100
Q ss_pred ----CceEEEEEeCCCCEEEEEEc---------------------------------------------CCeEEEEECCC
Q 003236 769 ----NKFHSCVFHPTFPSLLVIGC---------------------------------------------YETLELWNMTE 799 (837)
Q Consensus 769 ----~~I~sv~fspdg~~L~sgs~---------------------------------------------dg~I~IwDl~s 799 (837)
.....++|+|+...+++... ++.|+.||+.+
T Consensus 385 ~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~t 464 (689)
T 1yiq_A 385 FWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPVK 464 (689)
T ss_dssp TTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEETTT
T ss_pred cccccCCCcceECCCCCEEEEeccccceeeeeccccccccccccccccCccccccCcccccCCCCCCCcceeEEEEECCC
Confidence 01123688998888877632 36799999999
Q ss_pred CcEEEeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 003236 800 NKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 837 (837)
Q Consensus 800 ~~~~~l~~h~~~V~sla~spdg~~LaSgs~DG~I~IWd 837 (837)
++.+-...+..++..-.+...+.+|++++.||.|+.||
T Consensus 465 G~~~W~~~~~~~~~~g~~~tagglvf~gt~dg~l~a~D 502 (689)
T 1yiq_A 465 QQAAWEVPYVTIFNGGTLSTAGNLVFEGSADGRVIAYA 502 (689)
T ss_dssp TEEEEEEEESSSCCCCEEEETTTEEEEECTTSEEEEEE
T ss_pred CCeEeEccCCCCccCccceECCCEEEEECCCCcEEEEE
Confidence 99883333334444446667788999999999999996
|
| >1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=99.24 E-value=8.6e-10 Score=132.27 Aligned_cols=263 Identities=13% Similarity=0.100 Sum_probs=180.6
Q ss_pred CCEEEEEECCCcEEEEeCCCCeEEEEeccCCCC-----------eEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeEE
Q 003236 567 GKLLATGGHDKKAVLWCTESFTVKSTLEEHTQW-----------ITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRT 635 (837)
Q Consensus 567 g~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~-----------I~~l~fspdg~~Latgs~Dg~I~IWDl~~~~~~~~~ 635 (837)
+..|++++.++.|+.+|..+++.+..+...... ...+++ ++..|++++.|+.|+.+|..+++. +..
T Consensus 77 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~a~--~~~~v~v~~~dg~l~alD~~tG~~-~W~ 153 (677)
T 1kb0_A 77 DGIMYVSASWSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVAL--WKGKVYVGAWDGRLIALDAATGKE-VWH 153 (677)
T ss_dssp TTEEEEECGGGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCE-EEE
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCccccccccccCCCCCceE--ECCEEEEEcCCCEEEEEECCCCCE-Eee
Confidence 446777777899999999999999877543210 112333 456888899999999999999875 333
Q ss_pred eecc-c----cceEE-EEEcCCCCeEEEEEe-----CCCcEEEEECCCCeeeeEEecCCCe-------------------
Q 003236 636 FTGH-S----TTVMS-LDFHPSKEDLLCSCD-----NNSEIRYWSINNGSCAGVFKCQSGA------------------- 685 (837)
Q Consensus 636 ~~~h-~----~~V~s-l~fspdg~~llasgs-----~Dg~I~vwDl~t~~~i~~~~~~~~i------------------- 685 (837)
+..+ . ..+.+ ..+. +..+++.++ .++.|+.||.++|+.+..+......
T Consensus 154 ~~~~~~~~~~~~~~~~p~v~--~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~~~~g~~~w~~ 231 (677)
T 1kb0_A 154 QNTFEGQKGSLTITGAPRVF--KGKVIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAARTWDP 231 (677)
T ss_dssp EETTTTCCSSCBCCSCCEEE--TTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTSCG
T ss_pred ecCCcCcCcCcccccCcEEE--CCEEEEEecccccCCCCEEEEEECCCCcEEEEeccCCCCccccccccccccccccccc
Confidence 3332 1 11211 1111 344443333 2689999999999999887652211
Q ss_pred --------------eEEEEecCCCEEEEEEcCC-------------------eEEEEECCCCeEEEEEcC--CC------
Q 003236 686 --------------TQMRFQPRLGRILAAAIEN-------------------YISILDVETQVCRLKLQG--HK------ 724 (837)
Q Consensus 686 --------------~sl~~sp~g~~llags~dg-------------------~I~iwDl~s~~~~~~l~~--h~------ 724 (837)
..+.++++++.++++..++ .|..+|.++++.+..+.. |.
T Consensus 232 ~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~wd~~~ 311 (677)
T 1kb0_A 232 SGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDYTS 311 (677)
T ss_dssp GGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCC
T ss_pred cCceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCCCccccccc
Confidence 3578899999998887654 599999999999888764 21
Q ss_pred -CCEEEEEEcCCC---CEEEEEe-CCeEEEEEcCCCCCceeEEEeecC-----------CCce-----------------
Q 003236 725 -NQVHSVCWNTSG---EYLASVS-DELVRVWSIGSGSKGECIHELSCT-----------GNKF----------------- 771 (837)
Q Consensus 725 -~~V~sl~~spdg---~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~-----------~~~I----------------- 771 (837)
.....+....+| ..|+.++ +|.|+++|..+++ .+..+... ...+
T Consensus 312 ~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~---~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~ 388 (677)
T 1kb0_A 312 TQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGK---FISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPG 388 (677)
T ss_dssp CSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCC---EEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSC
T ss_pred CCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCC---EeccccccccCcccccCCCCceeeccccCcCCCccEECcC
Confidence 122233334467 5777777 9999999999984 43333211 1111
Q ss_pred -------EEEEEeCCCCEEEEEEcC-------------------------------------------CeEEEEECCCCc
Q 003236 772 -------HSCVFHPTFPSLLVIGCY-------------------------------------------ETLELWNMTENK 801 (837)
Q Consensus 772 -------~sv~fspdg~~L~sgs~d-------------------------------------------g~I~IwDl~s~~ 801 (837)
..++|+|+...+++...+ +.|..||+.+++
T Consensus 389 ~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~ 468 (677)
T 1kb0_A 389 PYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQK 468 (677)
T ss_dssp TTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTE
T ss_pred cccccCCCCceEcCCCCEEEEeChhcceeeecccccccccccccccccccccccccccccccCCCCCccEEEEEeCCCCc
Confidence 156889998888876542 689999999999
Q ss_pred EEEeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 003236 802 TLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 837 (837)
Q Consensus 802 ~~~l~~h~~~V~sla~spdg~~LaSgs~DG~I~IWd 837 (837)
.+-...+..++....+..++.++++++.||.|++||
T Consensus 469 ~~W~~~~~~~~~~g~~~~~g~~v~~g~~dg~l~a~D 504 (677)
T 1kb0_A 469 AAWSVEHVSPWNGGTLTTAGNVVFQGTADGRLVAYH 504 (677)
T ss_dssp EEEEEEESSSCCCCEEEETTTEEEEECTTSEEEEEE
T ss_pred EEeecCCCCCCcCcceEeCCCEEEEECCCCcEEEEE
Confidence 884444555566666777888999999999999986
|
| >3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=99.24 E-value=3.2e-10 Score=121.98 Aligned_cols=258 Identities=10% Similarity=0.006 Sum_probs=171.1
Q ss_pred CeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeEEe
Q 003236 557 KVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTF 636 (837)
Q Consensus 557 ~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~~~~~~~~~ 636 (837)
.+.++.+.++|. |.+++.+ |..||. +++.+..+......+....+. +..|++++.++.|..+|.. ++. ...+
T Consensus 61 ~~~~~~~~~~g~-l~v~t~~--l~~~d~-~g~~~~~~~~~~~~~~~~~~~--~~~l~v~t~~~~l~~~d~~-g~~-~~~~ 132 (330)
T 3hxj_A 61 IECRPSIGKDGT-IYFGSDK--VYAINP-DGTEKWRFDTKKAIVSDFTIF--EDILYVTSMDGHLYAINTD-GTE-KWRF 132 (330)
T ss_dssp EEECCEETTTTE-ECCSSCE--EEEECC-CGGGGGGSCC-----CCEEEE--TTEEEEECTTSEEEEECTT-SCE-EEEE
T ss_pred cccceEEecCCc-EEEecCc--EEEECC-CCcEEEEEECCCCcccCceEE--CCEEEEEecCCEEEEEcCC-CCE-EEEE
Confidence 356777777775 4445444 888885 555443333232223333333 5568888889999999988 553 4444
Q ss_pred eccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeeEEecC-CCeeEEEEecCCCEEEEEEcCCeEEEEECCCCe
Q 003236 637 TGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ-SGATQMRFQPRLGRILAAAIENYISILDVETQV 715 (837)
Q Consensus 637 ~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~~-~~i~sl~~sp~g~~llags~dg~I~iwDl~s~~ 715 (837)
..+...+.++...+++. ++.++.++.|..||.. ++.+..+... ..+.++.+.+++. +++++ +.|..|| .+++
T Consensus 133 ~~~~~~~~~~~~~~~g~--l~vgt~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~d~~g~-l~v~t--~~l~~~d-~~g~ 205 (330)
T 3hxj_A 133 KTKKAIYATPIVSEDGT--IYVGSNDNYLYAINPD-GTEKWRFKTNDAITSAASIGKDGT-IYFGS--DKVYAIN-PDGT 205 (330)
T ss_dssp ECSSCCCSCCEECTTSC--EEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTCC-EEEES--SSEEEEC-TTSC
T ss_pred cCCCceeeeeEEcCCCE--EEEEcCCCEEEEECCC-CCEeEEEecCCCceeeeEEcCCCE-EEEEe--CEEEEEC-CCCc
Confidence 44555567777777665 3356677999999999 8777766653 3456666666665 44444 8899999 7777
Q ss_pred EEEEEcCCCCCEEEEEEcCCCCEEEEEeCCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEE
Q 003236 716 CRLKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELW 795 (837)
Q Consensus 716 ~~~~l~~h~~~V~sl~~spdg~~LasgsDg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fspdg~~L~sgs~dg~I~Iw 795 (837)
.+..+......+.++..++++.+++++.++.|..+|. ++ ..+..+......+..+.+.+++ .|++++.++.|..+
T Consensus 206 ~~~~~~~~~~~~~~~~~~~~g~l~v~t~~~gl~~~~~-~g---~~~~~~~~~~~~~~~~~~~~~g-~l~v~t~~ggl~~~ 280 (330)
T 3hxj_A 206 EKWNFYAGYWTVTRPAISEDGTIYVTSLDGHLYAINP-DG---TEKWRFKTGKRIESSPVIGNTD-TIYFGSYDGHLYAI 280 (330)
T ss_dssp EEEEECCSSCCCSCCEECTTSCEEEEETTTEEEEECT-TS---CEEEEEECSSCCCSCCEECTTS-CEEEECTTCEEEEE
T ss_pred EEEEEccCCcceeceEECCCCeEEEEcCCCeEEEECC-CC---CEeEEeeCCCCccccceEcCCC-eEEEecCCCCEEEE
Confidence 7777766667788899998888777666888888874 33 3444444444444455666565 48888888899999
Q ss_pred ECCCCcEE-EeccCCCCeeEEEEeCCCCEEEEEECCCcEEEe
Q 003236 796 NMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIW 836 (837)
Q Consensus 796 Dl~s~~~~-~l~~h~~~V~sla~spdg~~LaSgs~DG~I~IW 836 (837)
|. +++.+ ........+.++...+++.+ ..++.+|.|++.
T Consensus 281 d~-~g~~~~~~~~~~~~~~~~~~d~~g~l-~~gt~~G~~~~~ 320 (330)
T 3hxj_A 281 NP-DGTEKWNFETGSWIIATPVIDENGTI-YFGTRNGKFYAL 320 (330)
T ss_dssp CT-TSCEEEEEECSSCCCSCCEECTTCCE-EEECTTSCEEEE
T ss_pred CC-CCcEEEEEEcCCccccceEEcCCCEE-EEEcCCCeEEEE
Confidence 96 56554 44445566778888777764 557889988764
|
| >1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1 | Back alignment and structure |
|---|
Probab=99.24 E-value=1.8e-10 Score=127.57 Aligned_cols=246 Identities=11% Similarity=0.006 Sum_probs=164.8
Q ss_pred cEEEEeCCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEe----------CCCeEEEEEcCCCCceeEEeecc-------c
Q 003236 578 KAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSS----------ADRTVRVWDTENPDYSLRTFTGH-------S 640 (837)
Q Consensus 578 ~I~VWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs----------~Dg~I~IWDl~~~~~~~~~~~~h-------~ 640 (837)
+|.++|..+++.+.++.....+ .+.|+||+++++++. .++.|.+||+.+.+. +..+... .
T Consensus 47 ~vsvID~~t~~v~~~i~vG~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~v-v~~I~v~~~~~~~~g 123 (368)
T 1mda_H 47 ENWVSCAGCGVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLP-IADIELPDAPRFSVG 123 (368)
T ss_dssp EEEEEETTTTEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCE-EEEEEETTSCSCCBS
T ss_pred eEEEEECCCCeEEEEEeCCCCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCE-EEEEECCCccccccC
Confidence 8889999999999998766566 799999999999886 378999999999775 5554322 1
Q ss_pred cceEEEEEcCCCCeEEEEEeC-CCcEEE--EECCCCeeeeEEecCCCeeEEEEecCC-CEEEEEEcCCeEEEEECCC---
Q 003236 641 TTVMSLDFHPSKEDLLCSCDN-NSEIRY--WSINNGSCAGVFKCQSGATQMRFQPRL-GRILAAAIENYISILDVET--- 713 (837)
Q Consensus 641 ~~V~sl~fspdg~~llasgs~-Dg~I~v--wDl~t~~~i~~~~~~~~i~sl~~sp~g-~~llags~dg~I~iwDl~s--- 713 (837)
.....+.|+|||++++++... +..|.+ +|+.+ +..+..... +.+.|++ ..+++.+.|+.+.++|+++
T Consensus 124 ~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t---v~~i~v~~~---~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~ 197 (368)
T 1mda_H 124 PRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD---DQLTKSASC---FHIHPGAAATHYLGSCPASLAASDLAAAPA 197 (368)
T ss_dssp CCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE---EEEEECSSC---CCCEEEETTEEECCCCTTSCEEEECCSSCC
T ss_pred CCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh---ceEEECCCc---eEEccCCCeEEEEEcCCCCEEEEECccccc
Confidence 346789999999988866543 467888 99877 455544322 2233444 3455666788888899887
Q ss_pred --CeEEEE----EcCCCCCEEEEEEcCCCCEEEEEeCCeEEEEEcCCCCCceeEEEeecC-------C---CceEEEEEe
Q 003236 714 --QVCRLK----LQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCT-------G---NKFHSCVFH 777 (837)
Q Consensus 714 --~~~~~~----l~~h~~~V~sl~~spdg~~LasgsDg~I~IwDl~s~~~~~~i~~~~~~-------~---~~I~sv~fs 777 (837)
++.... +.....+. .+..++.++++.. +.|.+.|+.+... ..+..+... . .....++|+
T Consensus 198 ~~~~v~~~~t~~i~vg~~P~---~~~~~~~~~~vs~-~~V~viD~~~~~~-~v~~~~~~~~~~~~~~~~~p~g~~~v~~s 272 (368)
T 1mda_H 198 AAGIVGAQCTGAQNCSSQAA---QANYPGMLVWAVA-SSILQGDIPAAGA-TMKAAIDGNESGRKADNFRSAGFQMVAKL 272 (368)
T ss_dssp CCEECCCCSCTTSCBCSCCE---EETTTTEEEECBS-SCCEEEECCSSCC-EEECCCCSSCTHHHHTTEEECSSSCEEEE
T ss_pred cCCeEEEEeeeeeeCCCCcc---ccccCCEEEEEcC-CEEEEEECCCCcc-eEEEEEEeccccccccccccCcceeeEEc
Confidence 432211 11112333 3333344455555 8899999865321 222222110 0 111226899
Q ss_pred CCCCEEEEEEc-C--------CeEEEEECCCCcEEEeccCCCCeeEEEEeCCCC-EEEEEE-CCCcEEEeC
Q 003236 778 PTFPSLLVIGC-Y--------ETLELWNMTENKTLTLSAHDKLVSSLAASTVNG-MVASAS-HDKCVKIWK 837 (837)
Q Consensus 778 pdg~~L~sgs~-d--------g~I~IwDl~s~~~~~l~~h~~~V~sla~spdg~-~LaSgs-~DG~I~IWd 837 (837)
++++.++++.. + +.+.++|+.+.+.+....-.....+|+|++|++ +++++. .++.|.++|
T Consensus 273 ~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~vg~~p~gi~~s~Dg~~l~va~~~~~~~VsVID 343 (368)
T 1mda_H 273 KNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGHDSDAIIAAQDGASDNYANSAGTEVLDIYD 343 (368)
T ss_dssp TTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEEEEECEEEECCSSSCEEEEEETTTTEEEEEE
T ss_pred CCCCEEEEEeccccCcccccCCCEEEEECCCCeEEEEEECCCCcceEEECCCCCEEEEEccCCCCeEEEEE
Confidence 99999988754 2 356799999999884443334689999999998 566666 589999986
|
| >3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A | Back alignment and structure |
|---|
Probab=99.22 E-value=4.7e-09 Score=115.80 Aligned_cols=255 Identities=8% Similarity=0.038 Sum_probs=164.7
Q ss_pred CCEEEEEECCCcEEEEeCCCCeEEEEeccC---------CCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeEEee
Q 003236 567 GKLLATGGHDKKAVLWCTESFTVKSTLEEH---------TQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFT 637 (837)
Q Consensus 567 g~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h---------~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~~~~~~~~~~ 637 (837)
+..|++++.++.|..||.++++.+..+... ...+.+.. ..++..|++++.++.|..+|..+++. +..+.
T Consensus 53 ~~~v~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~v~~~~g~l~a~d~~tG~~-~W~~~ 130 (376)
T 3q7m_A 53 DNVVYAADRAGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGGV-TVSGGHVYIGSEKAQVYALNTSDGTV-AWQTK 130 (376)
T ss_dssp TTEEEEECTTSEEEEEETTTCCEEEEEECCC---CCSCCCCCEEEEE-EEETTEEEEEETTSEEEEEETTTCCE-EEEEE
T ss_pred CCEEEEEcCCCeEEEEEccCCceeeeecCccccccccccCcccccCc-eEeCCEEEEEcCCCEEEEEECCCCCE-EEEEe
Confidence 557788888999999999999988666432 12232221 22456788889999999999998875 33333
Q ss_pred ccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeeEEecCCCee------EEEEecCCCEEEEEEcCCeEEEEEC
Q 003236 638 GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGAT------QMRFQPRLGRILAAAIENYISILDV 711 (837)
Q Consensus 638 ~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~~~~i~------sl~~sp~g~~llags~dg~I~iwDl 711 (837)
............ + . .++.++.++.|..+|..+++.+..+.....+. ...+. ++.+++++.++.|..+|.
T Consensus 131 ~~~~~~~~p~~~-~-~-~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~--~~~v~~g~~~g~l~~~d~ 205 (376)
T 3q7m_A 131 VAGEALSRPVVS-D-G-LVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTTA--FGAAVVGGDNGRVSAVLM 205 (376)
T ss_dssp CSSCCCSCCEEE-T-T-EEEEECTTSEEEEEETTTCCEEEEEECCC-----CCCCCCEEE--TTEEEECCTTTEEEEEET
T ss_pred CCCceEcCCEEE-C-C-EEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEEE--CCEEEEEcCCCEEEEEEC
Confidence 222222222222 2 3 45567779999999999999998887644331 22222 467888888999999999
Q ss_pred CCCeEEEEEcCCCCC----EE---EEEEcC--CCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCC
Q 003236 712 ETQVCRLKLQGHKNQ----VH---SVCWNT--SGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFP 781 (837)
Q Consensus 712 ~s~~~~~~l~~h~~~----V~---sl~~sp--dg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fspdg~ 781 (837)
.+++.+......... +. .+...| .+..+++++ ++.|..+|..++ +.+..... .....+.. ++.
T Consensus 206 ~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~~~d~~tG---~~~w~~~~--~~~~~~~~--~~~ 278 (376)
T 3q7m_A 206 EQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTALDLRSG---QIMWKREL--GSVNDFIV--DGN 278 (376)
T ss_dssp TTCCEEEEEECCC-----------CCCCCCEEETTEEEEECTTSCEEEEETTTC---CEEEEECC--CCEEEEEE--ETT
T ss_pred CCCcEEEEEecccCCCCcccccccccCCCcEEECCEEEEEecCcEEEEEECCCC---cEEeeccC--CCCCCceE--ECC
Confidence 999888776532110 00 010111 244556666 899999999888 44444332 23444444 356
Q ss_pred EEEEEEcCCeEEEEECCCCcEE-Eec-cCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 003236 782 SLLVIGCYETLELWNMTENKTL-TLS-AHDKLVSSLAASTVNGMVASASHDKCVKIWK 837 (837)
Q Consensus 782 ~L~sgs~dg~I~IwDl~s~~~~-~l~-~h~~~V~sla~spdg~~LaSgs~DG~I~IWd 837 (837)
.|++++.++.|..+|..+++.+ ... .....+..+... +..|+.++.+|.|.+||
T Consensus 279 ~l~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~--~~~l~v~~~~g~l~~~d 334 (376)
T 3q7m_A 279 RIYLVDQNDRVMALTIDGGVTLWTQSDLLHRLLTSPVLY--NGNLVVGDSEGYLHWIN 334 (376)
T ss_dssp EEEEEETTCCEEEEETTTCCEEEEECTTTTSCCCCCEEE--TTEEEEECTTSEEEEEE
T ss_pred EEEEEcCCCeEEEEECCCCcEEEeecccCCCcccCCEEE--CCEEEEEeCCCeEEEEE
Confidence 7899999999999999999877 332 222233334433 56788888889888875
|
| >3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A* | Back alignment and structure |
|---|
Probab=99.22 E-value=6.5e-10 Score=133.78 Aligned_cols=236 Identities=13% Similarity=0.105 Sum_probs=158.2
Q ss_pred cCCCCeEEEEEcCCCCEEEEEe-----CCCeEEEEEcCCCCceeEEeeccccceEEEEEcCCCCeEEEEEeCC-------
Q 003236 595 EHTQWITDVRFSPSLSRLATSS-----ADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN------- 662 (837)
Q Consensus 595 ~h~~~I~~l~fspdg~~Latgs-----~Dg~I~IWDl~~~~~~~~~~~~h~~~V~sl~fspdg~~llasgs~D------- 662 (837)
+|...+..++|+|||++||.+. .+..|+|||+.+++.....+.. .....++|+ |++.++++...+
T Consensus 126 ~~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~~~--~k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~ 202 (693)
T 3iuj_A 126 DGTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETPLKD--VKFSGISWL-GNEGFFYSSYDKPDGSELS 202 (693)
T ss_dssp TSCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEEEEE--EESCCCEEE-TTTEEEEEESSCCC-----
T ss_pred CCcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCccccCC--ceeccEEEe-CCCEEEEEEecCccccccc
Confidence 3556788999999999988543 3357999999997743222221 123578899 988777665432
Q ss_pred -----CcEEEEECCCCee--eeEEecC----CCeeEEEEecCCCEEEEEEcC----CeEEEEECCCCe-EEEEEcCCCCC
Q 003236 663 -----SEIRYWSINNGSC--AGVFKCQ----SGATQMRFQPRLGRILAAAIE----NYISILDVETQV-CRLKLQGHKNQ 726 (837)
Q Consensus 663 -----g~I~vwDl~t~~~--i~~~~~~----~~i~sl~~sp~g~~llags~d----g~I~iwDl~s~~-~~~~l~~h~~~ 726 (837)
..|++|++.++.. ...+... .....+.|+|++++|+..... +.|+++|+.++. ....+..+...
T Consensus 203 ~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~~~~ 282 (693)
T 3iuj_A 203 ARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQGDLDA 282 (693)
T ss_dssp --CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEECSSSS
T ss_pred ccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEeCCCCc
Confidence 3499999987643 2233322 236789999999998766542 489999998763 34455556666
Q ss_pred EEEEEEcCCCCEEEEEe--C---CeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCC---eEEEEECC
Q 003236 727 VHSVCWNTSGEYLASVS--D---ELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYE---TLELWNMT 798 (837)
Q Consensus 727 V~sl~~spdg~~Lasgs--D---g~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fspdg~~L~sgs~dg---~I~IwDl~ 798 (837)
.... |++++..|+..+ + +.|.++|+.++... ....+..+...+. .|++++++|++...++ .|++||+.
T Consensus 283 ~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~-~~~~l~~~~~~~~--~~s~~g~~lv~~~~~~g~~~l~~~d~~ 358 (693)
T 3iuj_A 283 DVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPA-HWRDLIPERQQVL--TVHSGSGYLFAEYMVDATARVEQFDYE 358 (693)
T ss_dssp CEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGG-GCEEEECCCSSCE--EEEEETTEEEEEEEETTEEEEEEECTT
T ss_pred eEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCcc-ccEEEecCCCCEE--EEEEECCEEEEEEEECCeeEEEEEECC
Confidence 6555 666666555544 3 47999999876431 1233444555554 8999999888777655 79999998
Q ss_pred CCcEEEec-cCCCCeeEEEEeCCCCEEEEEECC----CcEEEeC
Q 003236 799 ENKTLTLS-AHDKLVSSLAASTVNGMVASASHD----KCVKIWK 837 (837)
Q Consensus 799 s~~~~~l~-~h~~~V~sla~spdg~~LaSgs~D----G~I~IWd 837 (837)
.+....+. .+.+.+..+.++++++.|+....+ +.|+.||
T Consensus 359 g~~~~~l~~p~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d 402 (693)
T 3iuj_A 359 GKRVREVALPGLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFE 402 (693)
T ss_dssp SCEEEEECCSSSSEEEECCCCTTCSCEEEEEECSSSCCEEEEEC
T ss_pred CCeeEEeecCCCceEEeeecCCCCCEEEEEecCCCCCCEEEEEE
Confidence 76655443 345567788888888766655444 6777775
|
| >1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=99.21 E-value=4.1e-09 Score=126.60 Aligned_cols=256 Identities=11% Similarity=0.061 Sum_probs=166.4
Q ss_pred CCEEEEEECCCcEEEEeCCCCeEEEEeccC--CCCeEEEEEcC---CCCEEEEEe------CCCeEEEEEcCCCCceeEE
Q 003236 567 GKLLATGGHDKKAVLWCTESFTVKSTLEEH--TQWITDVRFSP---SLSRLATSS------ADRTVRVWDTENPDYSLRT 635 (837)
Q Consensus 567 g~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h--~~~I~~l~fsp---dg~~Latgs------~Dg~I~IWDl~~~~~~~~~ 635 (837)
+..|++++.|+.|+.+|.++++.+..+... ......+..+| ++ .+++++ .++.|+.||..+++..-..
T Consensus 121 ~g~v~v~~~dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~~~sP~v~~g-~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~ 199 (689)
T 1yiq_A 121 KGKVYVGVLDGRLEAIDAKTGQRAWSVDTRADHKRSYTITGAPRVVNG-KVVIGNGGAEFGVRGYVTAYDAETGKEAWRF 199 (689)
T ss_dssp TTEEEEECTTSEEEEEETTTCCEEEEEECCSCTTSCCBCCSCCEEETT-EEEECCBCTTTCCBCEEEEEETTTCCEEEEE
T ss_pred CCEEEEEccCCEEEEEECCCCCEeeeecCcCCCCCCccccCCcEEECC-EEEEEeCCCccCCCCEEEEEECCCCcEEEEe
Confidence 557888899999999999999998766532 11111111122 44 444443 3789999999998853332
Q ss_pred eec------------------------------cccceEEEEEcCCCCeEEEEEeCCC-------------------cEE
Q 003236 636 FTG------------------------------HSTTVMSLDFHPSKEDLLCSCDNNS-------------------EIR 666 (837)
Q Consensus 636 ~~~------------------------------h~~~V~sl~fspdg~~llasgs~Dg-------------------~I~ 666 (837)
... +......++++|+.+ +++.+..++ .|.
T Consensus 200 ~~~~~~p~~~~~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~~~~-~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~ 278 (689)
T 1yiq_A 200 YTVPGDPKLPPEGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDPELN-LLYIGVGNGSLWDPKWRSQAKGDNLFLSSIV 278 (689)
T ss_dssp ESSCCCTTSCCCSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEETTTT-EEEEECCCEESSCHHHHHTTCSCCTTTTEEE
T ss_pred cccCCCcccccccccccccccccCCceeeecCCCCccccceeEcCCCC-EEEEeCCCCCccccCCCCCCCCCceeeeeEE
Confidence 211 001112578888766 455665554 499
Q ss_pred EEECCCCeeeeEEecCC----------CeeEEEEecCCC---EEEEEEcCCeEEEEECCCCeEEEEEcCCC-CC------
Q 003236 667 YWSINNGSCAGVFKCQS----------GATQMRFQPRLG---RILAAAIENYISILDVETQVCRLKLQGHK-NQ------ 726 (837)
Q Consensus 667 vwDl~t~~~i~~~~~~~----------~i~sl~~sp~g~---~llags~dg~I~iwDl~s~~~~~~l~~h~-~~------ 726 (837)
.||.++|+.+..+.... .........++. .+++++.+|.|+++|.++++.+....... ..
T Consensus 279 AlD~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~ 358 (689)
T 1yiq_A 279 AVNADTGEYVWHYQTTPGDAWDYTATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMDM 358 (689)
T ss_dssp EEETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEET
T ss_pred EEEccCCceeEeeecCCcccccccCCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCEeccccccccccccccCc
Confidence 99999999998887421 122222233444 67888889999999999998875433211 00
Q ss_pred --------------------------------EEEEEEcCCCCEEEEEe-------------------------------
Q 003236 727 --------------------------------VHSVCWNTSGEYLASVS------------------------------- 743 (837)
Q Consensus 727 --------------------------------V~sl~~spdg~~Lasgs------------------------------- 743 (837)
-..++|+|+..++++..
T Consensus 359 ~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 438 (689)
T 1yiq_A 359 KTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGM 438 (689)
T ss_dssp TTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECC
T ss_pred cCCCcccchhhccccCCCCeeEeCCCcccccCCCcceECCCCCEEEEeccccceeeeeccccccccccccccccCccccc
Confidence 11268888888777652
Q ss_pred ---------------CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE-Eecc
Q 003236 744 ---------------DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSA 807 (837)
Q Consensus 744 ---------------Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fspdg~~L~sgs~dg~I~IwDl~s~~~~-~l~~ 807 (837)
++.|+.||+.++ +.+..+..+. .+....+...+..+++++.|+.|+.||.++++.+ .+..
T Consensus 439 ~p~~~~~~~~~~~~~~g~l~A~D~~tG---~~~W~~~~~~-~~~~g~~~tagglvf~gt~dg~l~a~D~~tG~~lw~~~~ 514 (689)
T 1yiq_A 439 MPEGAEGLLEMAKSWSGKLIAWDPVKQ---QAAWEVPYVT-IFNGGTLSTAGNLVFEGSADGRVIAYAADTGEKLWEQPA 514 (689)
T ss_dssp CCSSHHHHHHHHTTCEEEEEEEETTTT---EEEEEEEESS-SCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred cCcccccCCCCCCCcceeEEEEECCCC---CeEeEccCCC-CccCccceECCCEEEEECCCCcEEEEECCCCccceeeeC
Confidence 267999999988 5555554433 2333466667888999999999999999999988 4433
Q ss_pred C-CCCeeEEEEeCCCC-EEEEEE
Q 003236 808 H-DKLVSSLAASTVNG-MVASAS 828 (837)
Q Consensus 808 h-~~~V~sla~spdg~-~LaSgs 828 (837)
. .....-+.|..+|+ |+++.+
T Consensus 515 ~~~~~~~p~ty~~~G~qyv~~~~ 537 (689)
T 1yiq_A 515 ASGVMAAPVTYSVDGEQYVTFMA 537 (689)
T ss_dssp SSCCCSCCEEEEETTEEEEEEEE
T ss_pred CCCcccCceEEEECCEEEEEEEe
Confidence 3 22234467778887 444443
|
| >1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=99.21 E-value=2.6e-09 Score=128.07 Aligned_cols=254 Identities=10% Similarity=0.043 Sum_probs=170.4
Q ss_pred CCCEEEEEECCCcEEEEeCCCCeEEEEeccC-C----CCeEE-EEEcCCCCEEEEEeC------CCeEEEEEcCCCCcee
Q 003236 566 DGKLLATGGHDKKAVLWCTESFTVKSTLEEH-T----QWITD-VRFSPSLSRLATSSA------DRTVRVWDTENPDYSL 633 (837)
Q Consensus 566 dg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h-~----~~I~~-l~fspdg~~Latgs~------Dg~I~IWDl~~~~~~~ 633 (837)
++..|++++.|+.|+.+|..+++.+..+..+ . ..+.+ ... .+..+++++. ++.|+.||..+++...
T Consensus 127 ~~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~~p~v--~~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W 204 (677)
T 1kb0_A 127 WKGKVYVGAWDGRLIALDAATGKEVWHQNTFEGQKGSLTITGAPRV--FKGKVIIGNGGAEYGVRGYITAYDAETGERKW 204 (677)
T ss_dssp ETTEEEEECTTSEEEEEETTTCCEEEEEETTTTCCSSCBCCSCCEE--ETTEEEECCBCTTTCCBCEEEEEETTTCCEEE
T ss_pred ECCEEEEEcCCCEEEEEECCCCCEEeeecCCcCcCcCcccccCcEE--ECCEEEEEecccccCCCCEEEEEECCCCcEEE
Confidence 3568888899999999999999999877654 1 11221 111 2345555543 7999999999987533
Q ss_pred EEeecc-------------------------------ccceEEEEEcCCCCeEEEEEeCCC-------------------
Q 003236 634 RTFTGH-------------------------------STTVMSLDFHPSKEDLLCSCDNNS------------------- 663 (837)
Q Consensus 634 ~~~~~h-------------------------------~~~V~sl~fspdg~~llasgs~Dg------------------- 663 (837)
+..... ......++++++++.++ .+..++
T Consensus 205 ~~~~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~~~~vy-~~~~~~~~w~~~~~~~~~gd~~~~~ 283 (677)
T 1kb0_A 205 RWFSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAELNTMY-VGTGNGSPWSHKVRSPKGGDNLYLA 283 (677)
T ss_dssp EEESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETTTTEEE-EECCCEESSCHHHHSTTCCCCTTTT
T ss_pred EeccCCCCccccccccccccccccccccCceeEeCCCcccccceeEcCCCCEEE-EECCCCccccCCCCCccCCCCeeeE
Confidence 322211 01113578888876554 444342
Q ss_pred cEEEEECCCCeeeeEEecCC----------CeeEEEEecCC---CEEEEEEcCCeEEEEECCCCeEEEEEcCCCC-----
Q 003236 664 EIRYWSINNGSCAGVFKCQS----------GATQMRFQPRL---GRILAAAIENYISILDVETQVCRLKLQGHKN----- 725 (837)
Q Consensus 664 ~I~vwDl~t~~~i~~~~~~~----------~i~sl~~sp~g---~~llags~dg~I~iwDl~s~~~~~~l~~h~~----- 725 (837)
.|..+|.++++.+..+.... ....+....+| ..+++++.+|.|+++|.++++.+..+.....
T Consensus 284 sv~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~ 363 (677)
T 1kb0_A 284 SIVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASG 363 (677)
T ss_dssp EEEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEE
T ss_pred EEEEEECCCCCEEEEEecCCCcccccccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCCEeccccccccCcccc
Confidence 59999999999998877421 12233334466 5788888999999999999998877653211
Q ss_pred ------CE------------------------EEEEEcCCCCEEEEEe-C------------------------------
Q 003236 726 ------QV------------------------HSVCWNTSGEYLASVS-D------------------------------ 744 (837)
Q Consensus 726 ------~V------------------------~sl~~spdg~~Lasgs-D------------------------------ 744 (837)
++ ..++|+|+..++++.. +
T Consensus 364 ~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g 443 (677)
T 1kb0_A 364 YDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTA 443 (677)
T ss_dssp ECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCC
T ss_pred cCCCCceeeccccCcCCCccEECcCcccccCCCCceEcCCCCEEEEeChhcceeeecccccccccccccccccccccccc
Confidence 11 1468899888887753 2
Q ss_pred -------------CeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE-Eec-cCC
Q 003236 745 -------------ELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLS-AHD 809 (837)
Q Consensus 745 -------------g~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fspdg~~L~sgs~dg~I~IwDl~s~~~~-~l~-~h~ 809 (837)
+.|..||+.++ +.+..+.. ...+....+...+..+++++.++.|++||..+++.+ .+. .+.
T Consensus 444 ~~~~~~~~~~~~~g~l~A~D~~tG---~~~W~~~~-~~~~~~g~~~~~g~~v~~g~~dg~l~a~D~~tG~~lw~~~~~~~ 519 (677)
T 1kb0_A 444 KFFNAEPPKSKPFGRLLAWDPVAQ---KAAWSVEH-VSPWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKLWEAPTGTG 519 (677)
T ss_dssp EEECSSCCCSCCEEEEEEEETTTT---EEEEEEEE-SSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSC
T ss_pred cccccccCCCCCccEEEEEeCCCC---cEEeecCC-CCCCcCcceEeCCCEEEEECCCCcEEEEECCCCceeeeeeCCCC
Confidence 67999999988 55555443 334445567778888999999999999999999988 333 333
Q ss_pred CCeeEEEEeCCCCEEEE
Q 003236 810 KLVSSLAASTVNGMVAS 826 (837)
Q Consensus 810 ~~V~sla~spdg~~LaS 826 (837)
....-+.|..+|+.+++
T Consensus 520 ~~~~p~~y~~~G~~~v~ 536 (677)
T 1kb0_A 520 VVAAPSTYMVDGRQYVS 536 (677)
T ss_dssp CCSCCEEEEETTEEEEE
T ss_pred cccCCEEEEeCCEEEEE
Confidence 33344566778874443
|
| >1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1 | Back alignment and structure |
|---|
Probab=99.19 E-value=3.6e-08 Score=103.42 Aligned_cols=247 Identities=9% Similarity=0.003 Sum_probs=161.3
Q ss_pred CEEEEEECCCcEEEEeCCCCeE-----EEEeccCCCCeEEEEEcCCCCEEEEEe-CCCeEEEEEcCCCCceeEEeecccc
Q 003236 568 KLLATGGHDKKAVLWCTESFTV-----KSTLEEHTQWITDVRFSPSLSRLATSS-ADRTVRVWDTENPDYSLRTFTGHST 641 (837)
Q Consensus 568 ~~Lasgs~Dg~I~VWd~~t~~~-----~~~l~~h~~~I~~l~fspdg~~Latgs-~Dg~I~IWDl~~~~~~~~~~~~h~~ 641 (837)
.+|+.+.. +.|+.++++.... ...+......+..++|++++..|+.+. .++.|.++++..... .........
T Consensus 2 ~~l~~~~~-~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~-~~~~~~~~~ 79 (267)
T 1npe_A 2 THLLFAQT-GKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEP-TTIIRQDLG 79 (267)
T ss_dssp EEEEEEEE-EEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCC-EEEECTTCC
T ss_pred cEEEEEcC-CeEEEEEecCcccccccceeeecCCCCcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCc-EEEEECCCC
Confidence 45555543 4788888765432 112222234578999999766665554 578999999986542 222322235
Q ss_pred ceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeeEEecC-CCeeEEEEecCCCEEEEEEcC---CeEEEEECCCCeEE
Q 003236 642 TVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ-SGATQMRFQPRLGRILAAAIE---NYISILDVETQVCR 717 (837)
Q Consensus 642 ~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~~-~~i~sl~~sp~g~~llags~d---g~I~iwDl~s~~~~ 717 (837)
....+++++++..++++....+.|.++++............ .....++++|+++.++++... +.|..+++......
T Consensus 80 ~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~~~ 159 (267)
T 1npe_A 80 SPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRR 159 (267)
T ss_dssp CEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCE
T ss_pred CccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEEEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCCcE
Confidence 67899999987778877777889999999754332222222 467899999988888777754 68888888643322
Q ss_pred EEEcCCCCCEEEEEEcCCCCEEEEEe--CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEc-CCeEEE
Q 003236 718 LKLQGHKNQVHSVCWNTSGEYLASVS--DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGC-YETLEL 794 (837)
Q Consensus 718 ~~l~~h~~~V~sl~~spdg~~Lasgs--Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fspdg~~L~sgs~-dg~I~I 794 (837)
............+++++++..|+.+. .+.|.++|+... .....+. .......+++. +..|+++.. .+.|.+
T Consensus 160 ~~~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~---~~~~~~~-~~~~P~gi~~d--~~~lyva~~~~~~v~~ 233 (267)
T 1npe_A 160 ILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQP---GRRKVLE-GLQYPFAVTSY--GKNLYYTDWKTNSVIA 233 (267)
T ss_dssp EEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEE---EEEEEEE-CCCSEEEEEEE--TTEEEEEETTTTEEEE
T ss_pred EEEECCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCC---ceEEEec-CCCCceEEEEe--CCEEEEEECCCCeEEE
Confidence 22223335688999999887777666 679999998753 2222222 23334566654 556777665 469999
Q ss_pred EECCCCcEEEe-ccCC-CCeeEEEEeCCCC
Q 003236 795 WNMTENKTLTL-SAHD-KLVSSLAASTVNG 822 (837)
Q Consensus 795 wDl~s~~~~~l-~~h~-~~V~sla~spdg~ 822 (837)
+|..+++.+.. .... .....+++.|++.
T Consensus 234 ~d~~~g~~~~~i~~g~~~~p~gi~~~~~~~ 263 (267)
T 1npe_A 234 MDLAISKEMDTFHPHKQTRLYGITIALSQC 263 (267)
T ss_dssp EETTTTEEEEEECCSSCCCCCCEEEECSCC
T ss_pred EeCCCCCceEEEccccccccceeeecCccC
Confidence 99999987743 3222 2478888888764
|
| >2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=99.16 E-value=3.4e-08 Score=110.47 Aligned_cols=223 Identities=12% Similarity=0.076 Sum_probs=156.0
Q ss_pred EEc--CCCCEEEE-EECCCcEEEEeCCCC----eEEEEec------c-CCCCeEEEEEcCCCCEEEEEeCC------CeE
Q 003236 562 HFS--PDGKLLAT-GGHDKKAVLWCTESF----TVKSTLE------E-HTQWITDVRFSPSLSRLATSSAD------RTV 621 (837)
Q Consensus 562 ~fS--pdg~~Las-gs~Dg~I~VWd~~t~----~~~~~l~------~-h~~~I~~l~fspdg~~Latgs~D------g~I 621 (837)
.++ .++++|++ +..+++|+|+|+.+. +...+++ . ....-..+...|+| +++++..+ +.|
T Consensus 88 ~~~~~~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v 166 (462)
T 2ece_A 88 NGKPNIERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEGPGGI 166 (462)
T ss_dssp TCCTTCCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCSCCEE
T ss_pred ccCCCccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCCCCCeE
Confidence 336 78887665 456789999998755 6777773 1 11245667888999 77766655 789
Q ss_pred EEEEcCCCCceeEEeecc--c-cceEEEEEcCCCCeEEEEEe-------------------CCCcEEEEECCCCeeeeEE
Q 003236 622 RVWDTENPDYSLRTFTGH--S-TTVMSLDFHPSKEDLLCSCD-------------------NNSEIRYWSINNGSCAGVF 679 (837)
Q Consensus 622 ~IWDl~~~~~~~~~~~~h--~-~~V~sl~fspdg~~llasgs-------------------~Dg~I~vwDl~t~~~i~~~ 679 (837)
.++|..+.+. +..+... . ..-+.+.|+|+++.++ +.. .+.+|.+||+.+++.+.++
T Consensus 167 ~vlD~~T~~v-~~~~~~~~~~~~~~Yd~~~~p~~~~mv-sS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI 244 (462)
T 2ece_A 167 LMLDHYSFEP-LGKWEIDRGDQYLAYDFWWNLPNEVLV-SSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSL 244 (462)
T ss_dssp EEECTTTCCE-EEECCSBCTTCCCCCCEEEETTTTEEE-ECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEE
T ss_pred EEEECCCCeE-EEEEccCCCCccccceEEECCCCCEEE-EccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEE
Confidence 9999998764 4444422 1 2345688899988555 442 3689999999999888888
Q ss_pred ecC---CCeeEEEE--ecCCCEEEEEEc------CCeEEEEECCCCe--EEEEE--cCC----------------CCCEE
Q 003236 680 KCQ---SGATQMRF--QPRLGRILAAAI------ENYISILDVETQV--CRLKL--QGH----------------KNQVH 728 (837)
Q Consensus 680 ~~~---~~i~sl~~--sp~g~~llags~------dg~I~iwDl~s~~--~~~~l--~~h----------------~~~V~ 728 (837)
... .....+.| +|+++++++++. ++.|.+|..+.+. ....+ ... ...+.
T Consensus 245 ~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa 324 (462)
T 2ece_A 245 TLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVT 324 (462)
T ss_dssp ESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCC
T ss_pred ecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCcee
Confidence 874 23455656 999999888875 4678776655442 11111 110 24567
Q ss_pred EEEEcCCCCEEEEEe--CCeEEEEEcCCCCCceeEEEeecCCC--------------ceEEEEEeCCCCEEEEEE
Q 003236 729 SVCWNTSGEYLASVS--DELVRVWSIGSGSKGECIHELSCTGN--------------KFHSCVFHPTFPSLLVIG 787 (837)
Q Consensus 729 sl~~spdg~~Lasgs--Dg~I~IwDl~s~~~~~~i~~~~~~~~--------------~I~sv~fspdg~~L~sgs 787 (837)
.|.+++||++|+++. .+.|.+||+......+.+..+...+. .-..+.++|||++|+++.
T Consensus 325 ~I~lS~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk~LyVaN 399 (462)
T 2ece_A 325 DIDISLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRDGRRVYVTN 399 (462)
T ss_dssp CEEECTTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTTSSEEEEEC
T ss_pred EEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcCCCCEEEEEc
Confidence 899999999999988 77999999975544455655554321 357899999999999998
|
| >1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C* | Back alignment and structure |
|---|
Probab=99.15 E-value=6.1e-10 Score=123.85 Aligned_cols=169 Identities=11% Similarity=0.056 Sum_probs=130.0
Q ss_pred ceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCe-----------eeeEEecCCCeeEEEEecCCCEEEEEEcCCeEEEEE
Q 003236 642 TVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS-----------CAGVFKCQSGATQMRFQPRLGRILAAAIENYISILD 710 (837)
Q Consensus 642 ~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~-----------~i~~~~~~~~i~sl~~sp~g~~llags~dg~I~iwD 710 (837)
.+..+++++... ++++|+.+ .+++|++.... ......... |+.++| ++..++++ .++.|++||
T Consensus 39 ~~nlLais~~~g-ll~a~~~~-~l~v~~~~~l~~~~~~~~~~~~~~~~~~lp~-V~~l~f--d~~~L~v~-~~~~l~v~d 112 (388)
T 1xip_A 39 SLQNLDISNSKS-LFVAASGS-KAVVGELQLLRDHITSDSTPLTFKWEKEIPD-VIFVCF--HGDQVLVS-TRNALYSLD 112 (388)
T ss_dssp CCBCEEEETTTT-EEEEEETT-EEEEEEHHHHHHHHHSSSCCCCCSEEEECTT-EEEEEE--ETTEEEEE-ESSEEEEEE
T ss_pred cccEEEEcCCCC-EEEEeCCC-EEEEEEhhHhhhhhccccccccceEEeeCCC-eeEEEE--CCCEEEEE-cCCcEEEEE
Confidence 688999999876 55577766 56779865332 223445556 999999 88888888 889999999
Q ss_pred CCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcC
Q 003236 711 VETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCY 789 (837)
Q Consensus 711 l~s~~~~~~l~~h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fspdg~~L~sgs~d 789 (837)
+.+.........|...+.++.+.+.. ++++. ||.|.+||+..+. ... +...|++++|+|+| +++|..|
T Consensus 113 v~sl~~~~~~~~~~~~v~~i~~~~p~--~av~~~dG~L~v~dl~~~~---~~~----~~~~Vs~v~WSpkG--~~vg~~d 181 (388)
T 1xip_A 113 LEELSEFRTVTSFEKPVFQLKNVNNT--LVILNSVNDLSALDLRTKS---TKQ----LAQNVTSFDVTNSQ--LAVLLKD 181 (388)
T ss_dssp SSSTTCEEEEEECSSCEEEEEECSSE--EEEEETTSEEEEEETTTCC---EEE----EEESEEEEEECSSE--EEEEETT
T ss_pred chhhhccCccceeecceeeEEecCCC--EEEEECCCCEEEEEccCCc---ccc----ccCCceEEEEcCCc--eEEEEcC
Confidence 98766555666677889888877653 55555 9999999998763 222 34579999999999 7889999
Q ss_pred CeEEEEECCCCcE--E-Ee------c---cCCCCeeEEEEeCCCCEEEEE
Q 003236 790 ETLELWNMTENKT--L-TL------S---AHDKLVSSLAASTVNGMVASA 827 (837)
Q Consensus 790 g~I~IwDl~s~~~--~-~l------~---~h~~~V~sla~spdg~~LaSg 827 (837)
|.|++|+...+.. . .+ . +|...|.+|.|.+++.++++=
T Consensus 182 g~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~y 231 (388)
T 1xip_A 182 RSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVF 231 (388)
T ss_dssp SCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEE
T ss_pred CcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEEE
Confidence 9999999888774 2 33 2 378899999999999888763
|
| >1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A | Back alignment and structure |
|---|
Probab=99.09 E-value=3.5e-09 Score=122.19 Aligned_cols=257 Identities=9% Similarity=0.014 Sum_probs=178.8
Q ss_pred EEEEECCCcEEEEeCCCCeEEEEecc---------------------------------CC------CCeEEEEEcC---
Q 003236 570 LATGGHDKKAVLWCTESFTVKSTLEE---------------------------------HT------QWITDVRFSP--- 607 (837)
Q Consensus 570 Lasgs~Dg~I~VWd~~t~~~~~~l~~---------------------------------h~------~~I~~l~fsp--- 607 (837)
|.+|+..|.|+|+-+.+++.+..+.. +. +....+..|.
T Consensus 18 f~s~g~~g~~~v~g~ps~r~~~~i~vf~~~~~~g~g~~~es~~~l~~~~~~~~~~~~~~~g~~~~~~gd~hh~~~s~t~g 97 (595)
T 1fwx_A 18 FWSSGQSGEMRILGIPSMRELMRVPVFNRCSATGWGQTNESVRIHERTMSERTKKFLAANGKRIHDNGDLHHVHMSFTEG 97 (595)
T ss_dssp EECCBTTCEEEEEEETTCCEEEEEESSSCCTTTCTTTBHHHHHHHHTTCCHHHHHHHHHTTCSSCCCCCBCCEEEEEETT
T ss_pred EeeCCcCceEEEEecCCcceEEEeeeecCCCCcccCCchhHHHHHhccCCccchhhhhccCceecccCCCCccccCCCCC
Confidence 56788889999998888877766520 01 1122344554
Q ss_pred --CCCEEEEEeC-CCeEEEEEcCCCCceeEEee-ccccceEEEEE-c-CCCCeEEEEE-----------------eCCCc
Q 003236 608 --SLSRLATSSA-DRTVRVWDTENPDYSLRTFT-GHSTTVMSLDF-H-PSKEDLLCSC-----------------DNNSE 664 (837)
Q Consensus 608 --dg~~Latgs~-Dg~I~IWDl~~~~~~~~~~~-~h~~~V~sl~f-s-pdg~~llasg-----------------s~Dg~ 664 (837)
||++|+++.. +..|.+.|+.+.+. ...+. .....+..+++ . |+++++++++ ..++.
T Consensus 98 ~~DG~~lfVnd~~~~rVavIdl~t~~~-~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~ 176 (595)
T 1fwx_A 98 KYDGRFLFMNDKANTRVARVRCDVMKC-DAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNV 176 (595)
T ss_dssp EEEEEEEEEEETTTTEEEEEETTTTEE-EEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEE
T ss_pred CcCCCEEEEEcCCCCEEEEEECCCceE-eeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCce
Confidence 7888877765 55799999998653 34232 22345788888 4 8988887764 33568
Q ss_pred EEEEECCCCeeeeEEecCCCeeEEEEecCCCEEEEEEcCC--------------------------------------eE
Q 003236 665 IRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIEN--------------------------------------YI 706 (837)
Q Consensus 665 I~vwDl~t~~~i~~~~~~~~i~sl~~sp~g~~llags~dg--------------------------------------~I 706 (837)
|.++|..+.+.+..+........++++|+++++++++.+. .|
T Consensus 177 vtvID~~t~~v~~qI~Vgg~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V 256 (595)
T 1fwx_A 177 FTAVDADKWEVAWQVLVSGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGV 256 (595)
T ss_dssp EEEEETTTTEEEEEEEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTE
T ss_pred EEEEECCCCeEEEEEEeCCCccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECcE
Confidence 9999999999999998766778899999999999988553 36
Q ss_pred EEEECCC--CeE-EEEEcCCCCCEEEEEEcCCCCEEEEEe--CCeEEEEEcCCCC--------CceeEEEeecCCCceEE
Q 003236 707 SILDVET--QVC-RLKLQGHKNQVHSVCWNTSGEYLASVS--DELVRVWSIGSGS--------KGECIHELSCTGNKFHS 773 (837)
Q Consensus 707 ~iwDl~s--~~~-~~~l~~h~~~V~sl~~spdg~~Lasgs--Dg~I~IwDl~s~~--------~~~~i~~~~~~~~~I~s 773 (837)
.+.|.++ ++. +..+.. .....++.++|||++++++. ++.|.++|+.+.. ....+.....-+.....
T Consensus 257 ~VID~~~~~~~~~~~~Ipv-g~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~vG~gP~h 335 (595)
T 1fwx_A 257 KVVDGRKEASSLFTRYIPI-ANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELGLGPLH 335 (595)
T ss_dssp EEEECSGGGCCSSEEEEEE-ESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCBCCSCEEE
T ss_pred EEEeCcccCCceeEEEEec-CCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcCCCCCcce
Confidence 7777776 433 333432 23567899999999999988 7899999998541 01122222234566888
Q ss_pred EEEeCCCCEEEEEE-cCCeEEEEECCC----------CcEE-EeccCCCCe-----eEEEEeCCCCEEEEEEC
Q 003236 774 CVFHPTFPSLLVIG-CYETLELWNMTE----------NKTL-TLSAHDKLV-----SSLAASTVNGMVASASH 829 (837)
Q Consensus 774 v~fspdg~~L~sgs-~dg~I~IwDl~s----------~~~~-~l~~h~~~V-----~sla~spdg~~LaSgs~ 829 (837)
++|+++| ++++.. -++.|.+||+.. ...+ ++..|-.+- .++.++|||++|+++..
T Consensus 336 ~aF~~dG-~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~~g~t~~~DGk~l~~~Nk 407 (595)
T 1fwx_A 336 TAFDGRG-NAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATNDWLVCLSK 407 (595)
T ss_dssp EEECTTS-EEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCSSEEEEEES
T ss_pred EEECCCC-eEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeecccccccceeccceEeCCCCCEEEEcCC
Confidence 9999999 666555 477999999876 4444 444443321 22345799999998864
|
| >3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=99.09 E-value=7.8e-10 Score=118.93 Aligned_cols=256 Identities=10% Similarity=0.052 Sum_probs=168.4
Q ss_pred EEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeEEeeccc
Q 003236 561 CHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHS 640 (837)
Q Consensus 561 l~fSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~~~~~~~~~~~h~ 640 (837)
+.+..++ .|.+++.++.|..|| .+++....+..+...+.++...+++. |++++.+ |..||. +++. +..+....
T Consensus 25 ~~~d~~g-~l~v~t~~~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~~~g~-l~v~t~~--l~~~d~-~g~~-~~~~~~~~ 97 (330)
T 3hxj_A 25 PILAKNG-TIYLGSSNKNLYAIN-TDGSVKWFFKSGEIIECRPSIGKDGT-IYFGSDK--VYAINP-DGTE-KWRFDTKK 97 (330)
T ss_dssp CEECTTS-CEECSSTTTTTEEEC-TTSCEEESSCGGGEEEECCEETTTTE-ECCSSCE--EEEECC-CGGG-GGGSCC--
T ss_pred ceEccCC-eEEEEcCCCEEEEEC-CCCcEEEEEecCCCcccceEEecCCc-EEEecCc--EEEECC-CCcE-EEEEECCC
Confidence 4455566 455667788999999 88888776665555667777777665 5555544 888886 3332 22222222
Q ss_pred cceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeeEEecCCC-eeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEE
Q 003236 641 TTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSG-ATQMRFQPRLGRILAAAIENYISILDVETQVCRLK 719 (837)
Q Consensus 641 ~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~~~~-i~sl~~sp~g~~llags~dg~I~iwDl~s~~~~~~ 719 (837)
..+....+. + . .++.++.++.|..+|.. ++....+..... +.++...+++. +++++.++.|..||.. ++.+..
T Consensus 98 ~~~~~~~~~-~-~-~l~v~t~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~~g~-l~vgt~~~~l~~~d~~-g~~~~~ 171 (330)
T 3hxj_A 98 AIVSDFTIF-E-D-ILYVTSMDGHLYAINTD-GTEKWRFKTKKAIYATPIVSEDGT-IYVGSNDNYLYAINPD-GTEKWR 171 (330)
T ss_dssp ---CCEEEE-T-T-EEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTSC-EEEECTTSEEEEECTT-SCEEEE
T ss_pred CcccCceEE-C-C-EEEEEecCCEEEEEcCC-CCEEEEEcCCCceeeeeEEcCCCE-EEEEcCCCEEEEECCC-CCEeEE
Confidence 222333333 3 3 34467778899999998 777766664333 45566665544 7777888999999999 877777
Q ss_pred EcCCCCCEEEEEEcCCCCEEEEEeCCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCC
Q 003236 720 LQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTE 799 (837)
Q Consensus 720 l~~h~~~V~sl~~spdg~~LasgsDg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fspdg~~L~sgs~dg~I~IwDl~s 799 (837)
+......+.++.+.+++.+++++ +.|..|| .++ ..+.........+.++++.+++. |++++.++.|..+|...
T Consensus 172 ~~~~~~~~~~~~~d~~g~l~v~t--~~l~~~d-~~g---~~~~~~~~~~~~~~~~~~~~~g~-l~v~t~~~gl~~~~~~g 244 (330)
T 3hxj_A 172 FKTNDAITSAASIGKDGTIYFGS--DKVYAIN-PDG---TEKWNFYAGYWTVTRPAISEDGT-IYVTSLDGHLYAINPDG 244 (330)
T ss_dssp EECSSCCCSCCEECTTCCEEEES--SSEEEEC-TTS---CEEEEECCSSCCCSCCEECTTSC-EEEEETTTEEEEECTTS
T ss_pred EecCCCceeeeEEcCCCEEEEEe--CEEEEEC-CCC---cEEEEEccCCcceeceEECCCCe-EEEEcCCCeEEEECCCC
Confidence 76666677788888888866655 8899999 555 44445554556678888888875 77778888899998544
Q ss_pred CcEEEeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 003236 800 NKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 837 (837)
Q Consensus 800 ~~~~~l~~h~~~V~sla~spdg~~LaSgs~DG~I~IWd 837 (837)
.....+......+.++.+.+++ .|..++.+|.|..+|
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~~g-~l~v~t~~ggl~~~d 281 (330)
T 3hxj_A 245 TEKWRFKTGKRIESSPVIGNTD-TIYFGSYDGHLYAIN 281 (330)
T ss_dssp CEEEEEECSSCCCSCCEECTTS-CEEEECTTCEEEEEC
T ss_pred CEeEEeeCCCCccccceEcCCC-eEEEecCCCCEEEEC
Confidence 4433444444445556665555 455677787777765
|
| >2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=99.07 E-value=6.2e-08 Score=108.33 Aligned_cols=222 Identities=9% Similarity=-0.030 Sum_probs=149.9
Q ss_pred EEc--CCCCEEEE-EeCCCeEEEEEcCCCC---ceeEEee------c-cccceEEEEEcCCCCeEEEEEeCC------Cc
Q 003236 604 RFS--PSLSRLAT-SSADRTVRVWDTENPD---YSLRTFT------G-HSTTVMSLDFHPSKEDLLCSCDNN------SE 664 (837)
Q Consensus 604 ~fs--pdg~~Lat-gs~Dg~I~IWDl~~~~---~~~~~~~------~-h~~~V~sl~fspdg~~llasgs~D------g~ 664 (837)
.++ .+.++|++ +..+++|+|+|+.+.. ...+++. . .......+.+.|++ +++++..+ +.
T Consensus 88 ~~~~~~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG--i~Vs~~g~~~g~~~g~ 165 (462)
T 2ece_A 88 NGKPNIERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA--IYISALGNEEGEGPGG 165 (462)
T ss_dssp TCCTTCCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC--EEEEEEEETTSCSCCE
T ss_pred ccCCCccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe--EEEEcCCCcCCCCCCe
Confidence 346 77777665 4557899999997541 1233331 1 11245567888998 55565544 78
Q ss_pred EEEEECCCCeeeeEEecCC----CeeEEEEecCCCEEEEEE-------------------cCCeEEEEECCCCeEEEEEc
Q 003236 665 IRYWSINNGSCAGVFKCQS----GATQMRFQPRLGRILAAA-------------------IENYISILDVETQVCRLKLQ 721 (837)
Q Consensus 665 I~vwDl~t~~~i~~~~~~~----~i~sl~~sp~g~~llags-------------------~dg~I~iwDl~s~~~~~~l~ 721 (837)
|.++|.++++.+..+.... -...+.|+|+++.+++.. .++.|.+||+.+++.+.++.
T Consensus 166 v~vlD~~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~ 245 (462)
T 2ece_A 166 ILMLDHYSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLT 245 (462)
T ss_dssp EEEECTTTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEE
T ss_pred EEEEECCCCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEe
Confidence 9999999999999887432 234588899999888875 36899999999998888776
Q ss_pred CCC--CCEEEEEE--cCCCCEEEEEeC-------CeEEEEEcCCCCCceeEEEe--ec----------------CCCceE
Q 003236 722 GHK--NQVHSVCW--NTSGEYLASVSD-------ELVRVWSIGSGSKGECIHEL--SC----------------TGNKFH 772 (837)
Q Consensus 722 ~h~--~~V~sl~~--spdg~~LasgsD-------g~I~IwDl~s~~~~~~i~~~--~~----------------~~~~I~ 772 (837)
... .....|.| +|++++++++.. ++|.+|....+. ...+..+ .. ......
T Consensus 246 vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~-~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa 324 (462)
T 2ece_A 246 LGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGK-WNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVT 324 (462)
T ss_dssp SCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTE-EEEEEEEEECCEECCSSCCGGGGGGTEECCCCC
T ss_pred cCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCc-eeEEEEEeCCCccccccccccccccccCCCcee
Confidence 421 23455656 999998776543 478777665431 1222221 11 024567
Q ss_pred EEEEeCCCCEEEEEEc-CCeEEEEECCCC---cEEEeccCC---------------CCeeEEEEeCCCCEEEEEE
Q 003236 773 SCVFHPTFPSLLVIGC-YETLELWNMTEN---KTLTLSAHD---------------KLVSSLAASTVNGMVASAS 828 (837)
Q Consensus 773 sv~fspdg~~L~sgs~-dg~I~IwDl~s~---~~~~l~~h~---------------~~V~sla~spdg~~LaSgs 828 (837)
.+.+++|+++|+++.. .+.|.+||+.+. +.+....-. +....++++|||++|+++.
T Consensus 325 ~I~lS~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk~LyVaN 399 (462)
T 2ece_A 325 DIDISLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRDGRRVYVTN 399 (462)
T ss_dssp CEEECTTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTTSSEEEEEC
T ss_pred EEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcCCCCEEEEEc
Confidence 8999999999999887 459999998633 333211111 1368899999999999887
|
| >2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.07 E-value=3.4e-09 Score=116.03 Aligned_cols=220 Identities=9% Similarity=0.034 Sum_probs=150.9
Q ss_pred CCeEEEEEcCCCCEEEEEeC--CCeEEEEEcCCCCceeEEe-------eccccceEEEEEcCCCCeEEEEEeC-----CC
Q 003236 598 QWITDVRFSPSLSRLATSSA--DRTVRVWDTENPDYSLRTF-------TGHSTTVMSLDFHPSKEDLLCSCDN-----NS 663 (837)
Q Consensus 598 ~~I~~l~fspdg~~Latgs~--Dg~I~IWDl~~~~~~~~~~-------~~h~~~V~sl~fspdg~~llasgs~-----Dg 663 (837)
..+..|+++++|+++++... ++.++||.+.+++ +..+ ..+-..+.++++++++. ++++-.. +.
T Consensus 17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g~--~~~~p~~~~~~~~~~~~p~gv~~d~~g~-L~v~D~g~~~~~~~ 93 (343)
T 2qe8_A 17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQDG--LIPFPPQSGNAIITFDTVLGIKSDGNGI-VWMLDNGNQSKSVP 93 (343)
T ss_dssp SCEEEEEECTTSCEEEEECGGGCCSCSEEEEETTE--EEESCCCCSSCCCCCSCEEEEEECSSSE-EEEEECHHHHTSCC
T ss_pred CCcceEEECCCCCEEEEeCCCCCCceEEEEECCCC--eecCCCcccCcccceeEeeEEEEcCCCc-EEEEcCCCCcCCCC
Confidence 67899999999998888642 3435666665332 3322 23456799999999965 4444322 57
Q ss_pred cEEEEECCCCeeeeEEecC-------CCeeEEEEecCCCEEEEEE----cCCeEEEEECCCCeEEEEEcCCCCCEE-EEE
Q 003236 664 EIRYWSINNGSCAGVFKCQ-------SGATQMRFQPRLGRILAAA----IENYISILDVETQVCRLKLQGHKNQVH-SVC 731 (837)
Q Consensus 664 ~I~vwDl~t~~~i~~~~~~-------~~i~sl~~sp~g~~llags----~dg~I~iwDl~s~~~~~~l~~h~~~V~-sl~ 731 (837)
.|.+||+.+++.+..+... ..+..++++++++.++++. .++.|.+||+.+++....+.+|..... ...
T Consensus 94 ~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~~~~~~~~~~ 173 (343)
T 2qe8_A 94 KLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQGYPGIAPEDID 173 (343)
T ss_dssp EEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEECTTCTTTSCCSCC
T ss_pred eEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEecCCCcccccccc
Confidence 8999999999987777643 2458899998777766665 468999999998887776655432111 133
Q ss_pred EcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCC-eEEEEECC---CCc-----
Q 003236 732 WNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYE-TLELWNMT---ENK----- 801 (837)
Q Consensus 732 ~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fspdg~~L~sgs~dg-~I~IwDl~---s~~----- 801 (837)
+..+|..+.+.. ++.++.|. ..+..++|+|+++.|+++...+ .|+.++.. .+.
T Consensus 174 ~~~~g~~~~~~~~~g~~~~~~-----------------~~~~gia~s~dg~~ly~~~~~~~~l~~~~~~~~~~~~~~~~~ 236 (343)
T 2qe8_A 174 LVIDGVPVQIGQPDGTVIRPH-----------------LGVNGIVLDAENEWLYLSPMHSTSMYRIKSADLSNLQLTDAE 236 (343)
T ss_dssp CEETTEECBEECTTSCEECCC-----------------CCEEEEEECTTSCEEEEEESSCSEEEEEEHHHHTCTTCCHHH
T ss_pred eeECCEEEEeccCCCceecee-----------------cccceeEeccCCCEEEEEeCCCCeEEEEEHHHhcCCCCChhh
Confidence 445666666555 76665552 1356799999999999988776 66666532 111
Q ss_pred ---EEEeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 003236 802 ---TLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 837 (837)
Q Consensus 802 ---~~~l~~h~~~V~sla~spdg~~LaSgs~DG~I~IWd 837 (837)
.+...++......++++++|.++++...++.|.+||
T Consensus 237 ~~~~~~~~g~~g~pdgia~d~~G~l~va~~~~~~V~~~d 275 (343)
T 2qe8_A 237 LGSKIERYSEKPICDGISIDKDHNIYVGDLAHSAIGVIT 275 (343)
T ss_dssp HHTTCEEEEECCSCSCEEECTTCCEEEEEGGGTEEEEEE
T ss_pred hhcceEecccCCCCceEEECCCCCEEEEccCCCeEEEEE
Confidence 012223445677899999999999888889999986
|
| >1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=99.04 E-value=3.7e-08 Score=117.94 Aligned_cols=264 Identities=13% Similarity=0.080 Sum_probs=171.4
Q ss_pred CCEEEEEECCCcEEEEeCCCCeEEEEeccCCCC----------e-EEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeEE
Q 003236 567 GKLLATGGHDKKAVLWCTESFTVKSTLEEHTQW----------I-TDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRT 635 (837)
Q Consensus 567 g~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~----------I-~~l~fspdg~~Latgs~Dg~I~IWDl~~~~~~~~~ 635 (837)
+..|++++.++.|+.+|..+++.+..+...... + ..+.+ .+..|++++.|+.|+.+|..+++..-..
T Consensus 66 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~v~~~dg~l~alD~~tG~~~W~~ 143 (668)
T 1kv9_A 66 DGVIYTSMSWSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVAL--WGDKVYVGTLDGRLIALDAKTGKAIWSQ 143 (668)
T ss_dssp TTEEEEEEGGGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE--EBTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred CCEEEEECCCCeEEEEECCCChhceEECCCCCccccccccccCCccceEE--ECCEEEEEcCCCEEEEEECCCCCEeeee
Confidence 446777788899999999999999777533211 0 11222 3557888889999999999998864333
Q ss_pred eeccc---cceEE-EEEcCCCCeEEEEEe-----CCCcEEEEECCCCeeeeEEecCC-----------------------
Q 003236 636 FTGHS---TTVMS-LDFHPSKEDLLCSCD-----NNSEIRYWSINNGSCAGVFKCQS----------------------- 683 (837)
Q Consensus 636 ~~~h~---~~V~s-l~fspdg~~llasgs-----~Dg~I~vwDl~t~~~i~~~~~~~----------------------- 683 (837)
..... ..+.+ ..+. +..+++.++ .+|.|+.+|.++|+.+..+....
T Consensus 144 ~~~~~~~~~~~~~~P~v~--~~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~ 221 (668)
T 1kv9_A 144 QTTDPAKPYSITGAPRVV--KGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQGDQ 221 (668)
T ss_dssp ECSCTTSSCBCCSCCEEE--TTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCCSSC
T ss_pred ccCCCCCcceecCCCEEE--CCEEEEeCCCCCcCCCCEEEEEECCCCcEEEEecccCCCCCccccccccccccccCCccc
Confidence 22111 11111 1111 233443332 25899999999999998876410
Q ss_pred ---------CeeEEEEecCCCEEEEEEcCC-------------------eEEEEECCCCeEEEEEcC--CC-------CC
Q 003236 684 ---------GATQMRFQPRLGRILAAAIEN-------------------YISILDVETQVCRLKLQG--HK-------NQ 726 (837)
Q Consensus 684 ---------~i~sl~~sp~g~~llags~dg-------------------~I~iwDl~s~~~~~~l~~--h~-------~~ 726 (837)
....+++.++.+.++++..++ .|..+|.++++.+..+.. |. .+
T Consensus 222 ~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~wd~~~~~~ 301 (668)
T 1kv9_A 222 YWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQ 301 (668)
T ss_dssp HHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSC
T ss_pred eeeeCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeEeecCCCccccccCCCC
Confidence 012468888888888887665 499999999999988764 32 23
Q ss_pred EEEEEEcCCCC---EEEEEe-CCeEEEEEcCCCCCceeEEEeecCC------------Cc--------------------
Q 003236 727 VHSVCWNTSGE---YLASVS-DELVRVWSIGSGSKGECIHELSCTG------------NK-------------------- 770 (837)
Q Consensus 727 V~sl~~spdg~---~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~------------~~-------------------- 770 (837)
+....+..+|+ +|+.++ +|.++++|..+++ .+....... .+
T Consensus 302 ~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~---~l~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~p~~~ 378 (668)
T 1kv9_A 302 ITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGK---LISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSPF 378 (668)
T ss_dssp EEEEEEEETTEEEEEEEECCTTSEEEEEETTTCC---EEEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESSCTT
T ss_pred cEEEEeccCCcEEEEEEEECCCCEEEEEECCCCC---EeccccccccccccccccccCCccccccccccCCeeEECCCCc
Confidence 33333334665 566676 9999999999984 332111100 00
Q ss_pred ----eEEEEEeCCCCEEEEEE------------------------------------cCCeEEEEECCCCcEEEeccCCC
Q 003236 771 ----FHSCVFHPTFPSLLVIG------------------------------------CYETLELWNMTENKTLTLSAHDK 810 (837)
Q Consensus 771 ----I~sv~fspdg~~L~sgs------------------------------------~dg~I~IwDl~s~~~~~l~~h~~ 810 (837)
...++++|+...+++.. .++.|..||+.+++.+-...+..
T Consensus 379 G~~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~g~l~A~D~~tG~~~W~~~~~~ 458 (668)
T 1kv9_A 379 GAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGALLAWDPVKQKAAWKVPYPT 458 (668)
T ss_dssp CSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEETTTTEEEEEEEESS
T ss_pred cccCCCcceECCCCCEEEEeccccceEeeeeccccccccccccCccccccCCCCCCCccceEEEEeCCCCcEEEEccCCC
Confidence 11267888877766532 23789999999999873323333
Q ss_pred CeeEEEEeCCCCEEEEEECCCcEEEeC
Q 003236 811 LVSSLAASTVNGMVASASHDKCVKIWK 837 (837)
Q Consensus 811 ~V~sla~spdg~~LaSgs~DG~I~IWd 837 (837)
.+....+...+.+|++++.||.|++||
T Consensus 459 ~~~~~~~~t~gg~vf~g~~dg~l~a~d 485 (668)
T 1kv9_A 459 HWNGGTLSTAGNLVFQGTAAGQMHAYS 485 (668)
T ss_dssp SCCCCEEEETTTEEEEECTTSEEEEEE
T ss_pred CCcCceeEeCCCEEEEECCcccchhhh
Confidence 444445556788999999999999986
|
| >1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A | Back alignment and structure |
|---|
Probab=99.03 E-value=9.6e-09 Score=118.60 Aligned_cols=234 Identities=12% Similarity=0.124 Sum_probs=168.5
Q ss_pred CCCEEEEEEC-CCcEEEEeCCCCeEEEEeccC-CCCeEEEEE-c-CCCCEEEEEe------------------CCCeEEE
Q 003236 566 DGKLLATGGH-DKKAVLWCTESFTVKSTLEEH-TQWITDVRF-S-PSLSRLATSS------------------ADRTVRV 623 (837)
Q Consensus 566 dg~~Lasgs~-Dg~I~VWd~~t~~~~~~l~~h-~~~I~~l~f-s-pdg~~Latgs------------------~Dg~I~I 623 (837)
||++|++... ++.|.+.|+++.++...+.-. ...+..+++ + |+++++++++ .++.+.+
T Consensus 100 DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vtv 179 (595)
T 1fwx_A 100 DGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTA 179 (595)
T ss_dssp EEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEEE
T ss_pred CCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceEEE
Confidence 8888887765 457999999999988855422 245889998 5 8999999885 3468999
Q ss_pred EEcCCCCceeEEeeccccceEEEEEcCCCCeEEEEEeCC-------------------------------------CcEE
Q 003236 624 WDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN-------------------------------------SEIR 666 (837)
Q Consensus 624 WDl~~~~~~~~~~~~h~~~V~sl~fspdg~~llasgs~D-------------------------------------g~I~ 666 (837)
+|.++.+.......+- ....++++|+|+.+++++... +.|.
T Consensus 180 ID~~t~~v~~qI~Vgg--~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V~ 257 (595)
T 1fwx_A 180 VDADKWEVAWQVLVSG--NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVK 257 (595)
T ss_dssp EETTTTEEEEEEEESS--CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEE
T ss_pred EECCCCeEEEEEEeCC--CccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECcEE
Confidence 9999865433333322 456788999998888776432 2488
Q ss_pred EEECCC--Cee-eeEEecCCCeeEEEEecCCCEEEEEEc-CCeEEEEECCCCe------------EEEEEcCCCCCEEEE
Q 003236 667 YWSINN--GSC-AGVFKCQSGATQMRFQPRLGRILAAAI-ENYISILDVETQV------------CRLKLQGHKNQVHSV 730 (837)
Q Consensus 667 vwDl~t--~~~-i~~~~~~~~i~sl~~sp~g~~llags~-dg~I~iwDl~s~~------------~~~~l~~h~~~V~sl 730 (837)
+.|.++ ++. +..+.......++.++|||+++++++. ++.|.++|+.+.+ .+..+. -......+
T Consensus 258 VID~~~~~~~~~~~~Ipvg~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~-vG~gP~h~ 336 (595)
T 1fwx_A 258 VVDGRKEASSLFTRYIPIANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPE-LGLGPLHT 336 (595)
T ss_dssp EEECSGGGCCSSEEEEEEESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCB-CCSCEEEE
T ss_pred EEeCcccCCceeEEEEecCCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcC-CCCCcceE
Confidence 888887 555 667777778899999999999888775 6899999999653 333333 34567889
Q ss_pred EEcCCCCEEEEEe--CCeEEEEEcCCC-------CCceeEEEeecCCCceE-----EEEEeCCCCEEEEEEcCC--eE--
Q 003236 731 CWNTSGEYLASVS--DELVRVWSIGSG-------SKGECIHELSCTGNKFH-----SCVFHPTFPSLLVIGCYE--TL-- 792 (837)
Q Consensus 731 ~~spdg~~Lasgs--Dg~I~IwDl~s~-------~~~~~i~~~~~~~~~I~-----sv~fspdg~~L~sgs~dg--~I-- 792 (837)
+|+++| ++++.. |+.|.+||+... .....+..+..+..+-. .+.++|||++|++...-. .+
T Consensus 337 aF~~dG-~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~~g~t~~~DGk~l~~~Nk~skdr~~~ 415 (595)
T 1fwx_A 337 AFDGRG-NAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATNDWLVCLSKFSKDRFLN 415 (595)
T ss_dssp EECTTS-EEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCSSEEEEEESCCTTSSCC
T ss_pred EECCCC-eEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeecccccccceeccceEeCCCCCEEEEcCCCCcccccc
Confidence 999999 666655 999999999761 11356667766654321 124589999999987532 34
Q ss_pred ---------EEEECCCCcEE
Q 003236 793 ---------ELWNMTENKTL 803 (837)
Q Consensus 793 ---------~IwDl~s~~~~ 803 (837)
.++|+.+++..
T Consensus 416 ~gp~~~~~~ql~dis~~~m~ 435 (595)
T 1fwx_A 416 VGPLKPENDQLIDISGDKMV 435 (595)
T ss_dssp CCSSCCEEEEEEECSSSSCE
T ss_pred CCCCCCCcceEEEcCCCcEE
Confidence 88999766533
|
| >1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1 | Back alignment and structure |
|---|
Probab=99.01 E-value=4.2e-07 Score=95.23 Aligned_cols=222 Identities=7% Similarity=0.007 Sum_probs=144.4
Q ss_pred CEEEEEeCCCeEEEEEcCCCCce----eEEeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeeEEec-CCC
Q 003236 610 SRLATSSADRTVRVWDTENPDYS----LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSG 684 (837)
Q Consensus 610 ~~Latgs~Dg~I~IWDl~~~~~~----~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~-~~~ 684 (837)
.+|+.+.. +.|+.++++..... ...+......+.+++|++++..++++...++.|.++++........+.. ...
T Consensus 2 ~~l~~~~~-~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~ 80 (267)
T 1npe_A 2 THLLFAQT-GKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGS 80 (267)
T ss_dssp EEEEEEEE-EEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCC
T ss_pred cEEEEEcC-CeEEEEEecCcccccccceeeecCCCCcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEECCCCC
Confidence 35555553 47888998764321 1112222346789999998888888877788999999986654433332 246
Q ss_pred eeEEEEecCCCEEEEEEc-CCeEEEEECCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEe-C---CeEEEEEcCCCCCce
Q 003236 685 ATQMRFQPRLGRILAAAI-ENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-D---ELVRVWSIGSGSKGE 759 (837)
Q Consensus 685 i~sl~~sp~g~~llags~-dg~I~iwDl~s~~~~~~l~~h~~~V~sl~~spdg~~Lasgs-D---g~I~IwDl~s~~~~~ 759 (837)
...++++++++.++++.. .+.|.++++........+.........++++|++..|+.+. . +.|.++++..... .
T Consensus 81 p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~~-~ 159 (267)
T 1npe_A 81 PEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNR-R 159 (267)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCC-E
T ss_pred ccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEEEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCCc-E
Confidence 889999998787777765 57999999875433222332235678999999766665554 3 5788888764321 1
Q ss_pred eEEEeecCCCceEEEEEeCCCCEEEEEEcC-CeEEEEECCCCcEEEeccCCCCeeEEEEeCCCCEEEEEE-CCCcEEEeC
Q 003236 760 CIHELSCTGNKFHSCVFHPTFPSLLVIGCY-ETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASAS-HDKCVKIWK 837 (837)
Q Consensus 760 ~i~~~~~~~~~I~sv~fspdg~~L~sgs~d-g~I~IwDl~s~~~~~l~~h~~~V~sla~spdg~~LaSgs-~DG~I~IWd 837 (837)
.+ ..........+++++++..|+++... +.|.++|+.......+.........+++. +..|+.+. ..+.|.++|
T Consensus 160 ~~--~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~P~gi~~d--~~~lyva~~~~~~v~~~d 235 (267)
T 1npe_A 160 IL--AQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLEGLQYPFAVTSY--GKNLYYTDWKTNSVIAMD 235 (267)
T ss_dssp EE--ECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEECCCSEEEEEEE--TTEEEEEETTTTEEEEEE
T ss_pred EE--EECCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCCceEEEecCCCCceEEEEe--CCEEEEEECCCCeEEEEe
Confidence 11 11223467889999998888777764 59999999866544333333445677765 44455444 456776653
|
| >2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A* | Back alignment and structure |
|---|
Probab=98.97 E-value=1.6e-07 Score=98.87 Aligned_cols=205 Identities=11% Similarity=0.011 Sum_probs=144.1
Q ss_pred eEEEEeccCCC--CeEEEEEcCCCCEEEEEeC--CCeEEEEEcCCCCceeEEeeccccceEEEEEcCCCCeEEEEEeCCC
Q 003236 588 TVKSTLEEHTQ--WITDVRFSPSLSRLATSSA--DRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNS 663 (837)
Q Consensus 588 ~~~~~l~~h~~--~I~~l~fspdg~~Latgs~--Dg~I~IWDl~~~~~~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg 663 (837)
+.+.++. |.. ....+.|++++.++++.+. ++.|+++|+.+++.......+.......+++. ++.++++.-.++
T Consensus 10 ~vv~~~p-~~~~~f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~--g~~lyv~t~~~~ 86 (266)
T 2iwa_A 10 EVLNEFP-HDPYAFTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLL--NEKLYQVVWLKN 86 (266)
T ss_dssp EEEEEEE-CCTTCCEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEETTCS
T ss_pred eEEEEEE-CCCCCCcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEe--CCEEEEEEecCC
Confidence 4555663 443 4689999998644444433 58999999999875333222222233455655 566777777889
Q ss_pred cEEEEECCCCeeeeEEecCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEcCCC-----CCEEEEEEcCCCCE
Q 003236 664 EIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHK-----NQVHSVCWNTSGEY 738 (837)
Q Consensus 664 ~I~vwDl~t~~~i~~~~~~~~i~sl~~sp~g~~llags~dg~I~iwDl~s~~~~~~l~~h~-----~~V~sl~~spdg~~ 738 (837)
.|.++|..+.+.+..+... .-....++++++.++++..++.|.++|..+.+.+..+.-.. ..++.+.|. ++.+
T Consensus 87 ~v~viD~~t~~v~~~i~~g-~~~g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~-dg~l 164 (266)
T 2iwa_A 87 IGFIYDRRTLSNIKNFTHQ-MKDGWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI-NGEV 164 (266)
T ss_dssp EEEEEETTTTEEEEEEECC-SSSCCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEE
T ss_pred EEEEEECCCCcEEEEEECC-CCCeEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE-CCEE
Confidence 9999999999999998765 22334566788888888888999999999988877766321 246788888 7755
Q ss_pred EEEEe-CCeEEEEEcCCCCCceeEEEeecC-------------CCceEEEEEeCCCCEEEEEEc-CCeEEEEECCCC
Q 003236 739 LASVS-DELVRVWSIGSGSKGECIHELSCT-------------GNKFHSCVFHPTFPSLLVIGC-YETLELWNMTEN 800 (837)
Q Consensus 739 Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~-------------~~~I~sv~fspdg~~L~sgs~-dg~I~IwDl~s~ 800 (837)
++... ++.|.+.|..++ +.+..+... ......++|+|+++.+++++. .+.|++.++...
T Consensus 165 yvn~~~~~~V~vID~~tg---~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~~~ 238 (266)
T 2iwa_A 165 WANIWQTDCIARISAKDG---TLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLHLV 238 (266)
T ss_dssp EEEETTSSEEEEEETTTC---CEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEEEC
T ss_pred EEecCCCCeEEEEECCCC---cEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEecc
Confidence 55554 789999999998 455554421 135689999999987777664 568888887543
|
| >2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.97 E-value=2.9e-10 Score=126.24 Aligned_cols=201 Identities=9% Similarity=-0.024 Sum_probs=110.5
Q ss_pred CCCEEEEEeCCCeEEEEEcCCCCceeEEeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeeEEecCC--Ce
Q 003236 608 SLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQS--GA 685 (837)
Q Consensus 608 dg~~Latgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~~~--~i 685 (837)
++..|++++.|+.|+.||..+++. +..+.. ..+.+..+..++. ++++++.|+.|+.||..+++.+..+.... .+
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~-~W~~~~--~~~~s~p~~~~g~-~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~~ 83 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSI-KWTLKE--DPVLQVPTHVEEP-AFLPDPNDGSLYTLGSKNNEGLTKLPFTIPELV 83 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCE-EEEEEC--CCSCCCC-----C-CEEECTTTCCEEEC-----CCSEECSCCHHHHH
T ss_pred eCCEEEEEcCCCEEEEEECCCCCE-EEEecC--CCceecceEcCCC-EEEEeCCCCEEEEEECCCCceeeeeeccCcccc
Confidence 577899999999999999998875 444443 4455555555544 55567789999999999998876654321 11
Q ss_pred e-EEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEE
Q 003236 686 T-QMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHE 763 (837)
Q Consensus 686 ~-sl~~sp~g~~llags~dg~I~iwDl~s~~~~~~l~~h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~ 763 (837)
. +..+ ..++.+++++.++.|+.||.++++.+..+..+. .+.++|++..|++++ |+.|+.||.+++...-...
T Consensus 84 ~~sp~~-~~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~----~~~~~p~~~~v~~~~~dg~v~a~d~~tG~~~W~~~- 157 (369)
T 2hz6_A 84 QASPCR-SSDGILYMGKKQDIWYVIDLLTGEKQQTLSSAF----ADSLSPSTSLLYLGRTEYTITMYDTKTRELRWNAT- 157 (369)
T ss_dssp TTCSCC------CCCCEEEEEEEEECCC--------------------------EEEEEEEEEEECCCSSSSSCCCEEE-
T ss_pred ccCceE-ecCCEEEEEeCCCEEEEEECCCCcEEEEecCCC----cccccccCCEEEEEecCCEEEEEECCCCCEEEeEe-
Confidence 1 0111 135678888889999999999999888776543 234566777888777 8999999999885322211
Q ss_pred eecCCCceEEEEEeCCC---CEEEEEEcCCeEEEEECCCCcEEEeccCCCCeeE-EEEeCCCC
Q 003236 764 LSCTGNKFHSCVFHPTF---PSLLVIGCYETLELWNMTENKTLTLSAHDKLVSS-LAASTVNG 822 (837)
Q Consensus 764 ~~~~~~~I~sv~fspdg---~~L~sgs~dg~I~IwDl~s~~~~~l~~h~~~V~s-la~spdg~ 822 (837)
... ....++..+. ..+++++.++.|+.||..+++.+-......++.. ..++.++.
T Consensus 158 ~~~----~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~~~pv~~~~~~~~dg~ 216 (369)
T 2hz6_A 158 YFD----YAASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVLWIQNYASPVVAFYVWQREGL 216 (369)
T ss_dssp EEE----ECCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCEEEEEECSSCEEEEEECTTSSC
T ss_pred ccc----ccCccccCCccccceEEEECCCCEEEEEECCCCcEEEEecCCCceEEEEEecCCce
Confidence 111 1222334432 5688899999999999999998733334455543 34445553
|
| >2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A* | Back alignment and structure |
|---|
Probab=98.95 E-value=1.2e-07 Score=111.35 Aligned_cols=263 Identities=11% Similarity=0.109 Sum_probs=166.3
Q ss_pred CCEEEEEEC-CCcEEEEeC-CCCeEEEEeccCCC-Ce----------EEEEEcCCCCEEEEEeCCCeEEEEEcCCCCcee
Q 003236 567 GKLLATGGH-DKKAVLWCT-ESFTVKSTLEEHTQ-WI----------TDVRFSPSLSRLATSSADRTVRVWDTENPDYSL 633 (837)
Q Consensus 567 g~~Lasgs~-Dg~I~VWd~-~t~~~~~~l~~h~~-~I----------~~l~fspdg~~Latgs~Dg~I~IWDl~~~~~~~ 633 (837)
+..|++++. ++.|+.+|. .+++.+-.+..... .+ ..+++ ++..|++++.|+.|..+|..+++...
T Consensus 62 ~g~vyv~~~~~~~v~AlD~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~v~~~dg~l~alD~~tG~~~W 139 (571)
T 2ad6_A 62 GDMMYVHSAFPNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAY--GAGQIVKKQANGHLLALDAKTGKINW 139 (571)
T ss_dssp TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEE
T ss_pred CCEEEEEeCCCCEEEEEeCCCCccEEEEEcCCCCccccccccccccccccEE--ECCEEEEEeCCCEEEEEECCCCCEEE
Confidence 446666666 889999999 89998877643221 00 11222 35678888899999999999987643
Q ss_pred EEee-ccc--cceEE-EEEcCCCCeEEEEEeC-----CCcEEEEECCCCeeeeEEecCCCe-------------------
Q 003236 634 RTFT-GHS--TTVMS-LDFHPSKEDLLCSCDN-----NSEIRYWSINNGSCAGVFKCQSGA------------------- 685 (837)
Q Consensus 634 ~~~~-~h~--~~V~s-l~fspdg~~llasgs~-----Dg~I~vwDl~t~~~i~~~~~~~~i------------------- 685 (837)
..-. .+. ..+.+ .... +..+++.+.. ++.|+.+|.++++.+..+......
T Consensus 140 ~~~~~~~~~~~~~~~~P~v~--~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~p~~~~~~~~~G~~ 217 (571)
T 2ad6_A 140 EVEVCDPKVGSTLTQAPFVA--KDTVLMGCSGAELGVRGAVNAFDLKTGELKWRAFATGSDDSVRLAKDFNSANPHYGQF 217 (571)
T ss_dssp EEECCCGGGTCBCCSCCEEE--TTEEEEECBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCS
T ss_pred EecCCCCCccceeccCCEEE--CCEEEEEecCCccCCCCEEEEEECCCCcEEEEEccCCCccccccCccccccccccccc
Confidence 3222 111 01211 1111 2444443332 789999999999999887753321
Q ss_pred --------------------eEEEEecCCCEEEEEEcC----------------CeEEEEECCCCeEEEEEcC--CC---
Q 003236 686 --------------------TQMRFQPRLGRILAAAIE----------------NYISILDVETQVCRLKLQG--HK--- 724 (837)
Q Consensus 686 --------------------~sl~~sp~g~~llags~d----------------g~I~iwDl~s~~~~~~l~~--h~--- 724 (837)
..+++.++.+.++++..+ +.|..+|.++++.+..+.. |.
T Consensus 218 ~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~~v~Ald~~tG~~~W~~~~~~~d~~d 297 (571)
T 2ad6_A 218 GLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTPHDEWD 297 (571)
T ss_dssp SHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEEESSTTCSSC
T ss_pred ccccccCcccceecCCCCeeeeEEEcCCCCeEEEECCCCccccCCccCCCceeEEEEEEEecCCCcEEEEecCCCCcccc
Confidence 235677777788777642 3699999999999888763 21
Q ss_pred -----CCEEEEEEcCCCC---EEEEEe-CCeEEEEEcCCCCCceeEEEeecCC-------------Cce-----------
Q 003236 725 -----NQVHSVCWNTSGE---YLASVS-DELVRVWSIGSGSKGECIHELSCTG-------------NKF----------- 771 (837)
Q Consensus 725 -----~~V~sl~~spdg~---~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~-------------~~I----------- 771 (837)
.++. +....+|+ +++.++ +|.++++|..+++ .+..+.... .++
T Consensus 298 ~~~~~~p~l-~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~---~~w~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~ 373 (571)
T 2ad6_A 298 FAGVNQMVL-TDQPVNGKMTPLLSHIDRNGILYTLNRENGN---LIVAEKVDPAVNVFKKVDLKTGTPVRDPEFATRMDH 373 (571)
T ss_dssp CCCCCCCEE-EEEEETTEEEEEEEEECTTSEEEEEETTTCC---EEEEEESSTTCCSEEEECTTTCSEEECGGGCCCTTC
T ss_pred cccCCCCEE-EecccCCcEEEEEEEeCCCcEEEEEECCCCC---EEeeecccCCccccccccccCCceecccccCCCCCC
Confidence 1221 22224674 566666 8899999999884 333322111 111
Q ss_pred ---------------EEEEEeCCCCEEEEEEc-------------------------------------CCeEEEEECCC
Q 003236 772 ---------------HSCVFHPTFPSLLVIGC-------------------------------------YETLELWNMTE 799 (837)
Q Consensus 772 ---------------~sv~fspdg~~L~sgs~-------------------------------------dg~I~IwDl~s 799 (837)
..++++|+...|++... ++.|+.||+.+
T Consensus 374 ~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~g~l~a~D~~t 453 (571)
T 2ad6_A 374 KGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAMYPGPNGPTKKEMGQIRAFDLTT 453 (571)
T ss_dssp CEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSTTSCCCEEEEEECTTT
T ss_pred CceEECCCCccccCCCCceECCCCCEEEEEchhccccccccccccccCCccccccceeccCccccCCCCCCeEEEEECCC
Confidence 24578888887777642 46899999999
Q ss_pred CcEEEeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 003236 800 NKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 837 (837)
Q Consensus 800 ~~~~~l~~h~~~V~sla~spdg~~LaSgs~DG~I~IWd 837 (837)
++.+-...+...+....+...+.+++.++.||.|++||
T Consensus 454 G~~~W~~~~~~~~~~~~~~t~gg~v~~g~~dg~l~a~D 491 (571)
T 2ad6_A 454 GKAKWTKWEKFAAWGGTLYTKGGLVWYATLDGYLKALD 491 (571)
T ss_dssp CCEEEEEEESSCCCSBCEEETTTEEEEECTTSEEEEEE
T ss_pred CCEEEEecCCCCccceeEEECCCEEEEEcCCCeEEEEE
Confidence 98873333333333333344567777889999999886
|
| >4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A* | Back alignment and structure |
|---|
Probab=98.93 E-value=2.5e-06 Score=104.03 Aligned_cols=268 Identities=7% Similarity=0.015 Sum_probs=181.4
Q ss_pred CCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEecc-------CCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcC
Q 003236 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEE-------HTQWITDVRFSPSLSRLATSSADRTVRVWDTE 627 (837)
Q Consensus 555 ~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~-------h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~ 627 (837)
...|.++...++|.+.+ |+.+ -|.+||..++........ ....|.++...++|. |..|+.++-|.+|+..
T Consensus 262 ~~~i~~i~~d~~g~lWi-gt~~-Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~-lWigt~~~Gl~~~~~~ 338 (795)
T 4a2l_A 262 SNYIRSLAMDSQNRLWI-GTFN-DLNIYHEGTDSFASYSSNPVENGSLSQRSVRSIFMDSQGG-MWLGTYFGGLNYYHPI 338 (795)
T ss_dssp CSBEEEEEECTTSCEEE-EESS-CEEEEETTTTEEEEECCCTTSTTSCSSSCEEEEEECTTSC-EEEEESSSCEEEECGG
T ss_pred CCeEEEEEEcCCCCEEE-EeCC-hhheEcCCCCeEEEEecCCCCCCCCCCCcEEEEEEeCCcC-EEEEECCCCeEEeCCC
Confidence 35699999998887554 4555 589999887765543221 235799999998876 5567777779999876
Q ss_pred CCCceeEEee-----ccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeeEEe---------cCCCeeEEEEecC
Q 003236 628 NPDYSLRTFT-----GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK---------CQSGATQMRFQPR 693 (837)
Q Consensus 628 ~~~~~~~~~~-----~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~---------~~~~i~sl~~sp~ 693 (837)
+......... -....|.++...+++. +..|+.++.|.+||..++....... ....|.++...++
T Consensus 339 ~~~~~~~~~~~~~~~l~~~~V~~i~~d~~g~--lWiGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~ 416 (795)
T 4a2l_A 339 RNRFKNIRNIPYKNSLSDNVVSCIVEDKDKN--LWIGTNDGGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYVDEK 416 (795)
T ss_dssp GGSSEEECCCTTSSSCSCSSEEEEEECTTSC--EEEEESSSCEEEECTTTCCEEEECCC------CCSCSCEEEEEEETT
T ss_pred cccceEEcCCCCCCCCCCCeeEEEEECCCCC--EEEEECCCCeEEEcCCCCcEEEEecCCCCcccCCCCccEEEEEEcCC
Confidence 5443211110 1235689999888765 3356667779999998776544321 1245888888888
Q ss_pred CCEEEEEEcCCeEEEEECCCCeEEEEEc----CCCCCEEEEEEcCCCCEEEEEeCCeEEEEEcCCCCCceeEEEee----
Q 003236 694 LGRILAAAIENYISILDVETQVCRLKLQ----GHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELS---- 765 (837)
Q Consensus 694 g~~llags~dg~I~iwDl~s~~~~~~l~----~h~~~V~sl~~spdg~~LasgsDg~I~IwDl~s~~~~~~i~~~~---- 765 (837)
+..|.+|+.++.|.+||..+++...... .....|.++..+++|.+.+++. +.|.+||..++ .......
T Consensus 417 g~~lWigt~~~Gl~~~d~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lwigt~-~Gl~~~~~~~~---~~~~~~~~~~~ 492 (795)
T 4a2l_A 417 KSLVYIGTHAGGLSILHRNSGQVENFNQRNSQLVNENVYAILPDGEGNLWLGTL-SALVRFNPEQR---SFTTIEKEKDG 492 (795)
T ss_dssp TTEEEEEETTTEEEEEETTTCCEEEECTTTSCCSCSCEEEEEECSSSCEEEEES-SCEEEEETTTT---EEEECCBCTTC
T ss_pred CCEEEEEeCcCceeEEeCCCCcEEEeecCCCCcCCCeeEEEEECCCCCEEEEec-CceeEEeCCCC---eEEEccccccc
Confidence 7757788888889999998876443322 1345799999999998777665 55889998765 2221111
Q ss_pred --cCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEEEec-------cCCCCeeEEEEeCCCCEEEEEECCCcEEEe
Q 003236 766 --CTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLS-------AHDKLVSSLAASTVNGMVASASHDKCVKIW 836 (837)
Q Consensus 766 --~~~~~I~sv~fspdg~~L~sgs~dg~I~IwDl~s~~~~~l~-------~h~~~V~sla~spdg~~LaSgs~DG~I~IW 836 (837)
.....|.++...+++. |.+++. +.|.+||..+++. .+. .....|.++...++|.+.++.. +| |..|
T Consensus 493 ~~~~~~~i~~i~~d~~g~-lWigt~-~Gl~~~~~~~~~~-~~~~~~~~~~l~~~~i~~i~~d~~g~lWigT~-~G-l~~~ 567 (795)
T 4a2l_A 493 TPVVSKQITTLFRDSHKR-LWIGGE-EGLSVFKQEGLDI-QKASILPVSNVTKLFTNCIYEASNGIIWVGTR-EG-FYCF 567 (795)
T ss_dssp CBCCCCCEEEEEECTTCC-EEEEES-SCEEEEEEETTEE-EECCCSCSCGGGGSCEEEEEECTTSCEEEEES-SC-EEEE
T ss_pred cccCCceEEEEEECCCCC-EEEEeC-CceEEEeCCCCeE-EEecCCCCCCCCCCeeEEEEECCCCCEEEEeC-CC-ceeE
Confidence 1236788999998887 555555 5688999877765 332 2345789999988888666543 34 4444
|
| >4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A* | Back alignment and structure |
|---|
Probab=98.91 E-value=2.1e-06 Score=104.61 Aligned_cols=266 Identities=8% Similarity=0.087 Sum_probs=177.8
Q ss_pred CCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEecc-------CCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcC
Q 003236 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEE-------HTQWITDVRFSPSLSRLATSSADRTVRVWDTE 627 (837)
Q Consensus 555 ~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~-------h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~ 627 (837)
...|.++...++|.+.+ |+.++-|.+||..+++....... ....|.++...++|.+. .|+.+ -|.+||..
T Consensus 214 ~~~i~~i~~d~~g~lwi-gt~~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lW-igt~~-Gl~~~~~~ 290 (795)
T 4a2l_A 214 TKQIQAILQQSPTRIWV-ATEGAGLFLINPKTKEIKNYLHSPSNPKSISSNYIRSLAMDSQNRLW-IGTFN-DLNIYHEG 290 (795)
T ss_dssp CCCEEEEEEEETTEEEE-EEBSSCEEEEETTTTEEEEECCCTTCTTSCSCSBEEEEEECTTSCEE-EEESS-CEEEEETT
T ss_pred CCeeEEEEEcCCCCEEE-EECCCCeEEEeCCCCeEEEeecCCCCccccCCCeEEEEEEcCCCCEE-EEeCC-hhheEcCC
Confidence 46799999888886554 55554599999887665543322 23569999998887754 45555 48899987
Q ss_pred CCCceeEEee--------ccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeeEEe-------cCCCeeEEEEec
Q 003236 628 NPDYSLRTFT--------GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK-------CQSGATQMRFQP 692 (837)
Q Consensus 628 ~~~~~~~~~~--------~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~-------~~~~i~sl~~sp 692 (837)
+... ..+. -....|.++...++|. +..|+.++.|.+|+..+........ ....|.++...+
T Consensus 291 ~~~~--~~~~~~~~~~~~l~~~~i~~i~~D~~g~--lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~l~~~~V~~i~~d~ 366 (795)
T 4a2l_A 291 TDSF--ASYSSNPVENGSLSQRSVRSIFMDSQGG--MWLGTYFGGLNYYHPIRNRFKNIRNIPYKNSLSDNVVSCIVEDK 366 (795)
T ss_dssp TTEE--EEECCCTTSTTSCSSSCEEEEEECTTSC--EEEEESSSCEEEECGGGGSSEEECCCTTSSSCSCSSEEEEEECT
T ss_pred CCeE--EEEecCCCCCCCCCCCcEEEEEEeCCcC--EEEEECCCCeEEeCCCcccceEEcCCCCCCCCCCCeeEEEEECC
Confidence 6542 2221 1235799999998876 3356667779999876554322211 123578888877
Q ss_pred CCCEEEEEEcCCeEEEEECCCCeEEEEEcC--------CCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEE
Q 003236 693 RLGRILAAAIENYISILDVETQVCRLKLQG--------HKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHE 763 (837)
Q Consensus 693 ~g~~llags~dg~I~iwDl~s~~~~~~l~~--------h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~ 763 (837)
++. |.+|+.++.|..||..++........ ....|.+++.++++.+|.+|+ ++.|.+||..++. . ..
T Consensus 367 ~g~-lWiGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~---~-~~ 441 (795)
T 4a2l_A 367 DKN-LWIGTNDGGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQ---V-EN 441 (795)
T ss_dssp TSC-EEEEESSSCEEEECTTTCCEEEECCC------CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETTTCC---E-EE
T ss_pred CCC-EEEEECCCCeEEEcCCCCcEEEEecCCCCcccCCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCc---E-EE
Confidence 654 66788888899999887654432211 235799999999999444455 6789999988762 2 22
Q ss_pred ee-----cCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEEEecc-------CCCCeeEEEEeCCCCEEEEEECCC
Q 003236 764 LS-----CTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSA-------HDKLVSSLAASTVNGMVASASHDK 831 (837)
Q Consensus 764 ~~-----~~~~~I~sv~fspdg~~L~sgs~dg~I~IwDl~s~~~~~l~~-------h~~~V~sla~spdg~~LaSgs~DG 831 (837)
+. .....|.++...+++. |.+++. +.|.+||..+++...+.. ....|.++...++|.+.+... +|
T Consensus 442 ~~~~~~~l~~~~v~~i~~d~~g~-lwigt~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~-~G 518 (795)
T 4a2l_A 442 FNQRNSQLVNENVYAILPDGEGN-LWLGTL-SALVRFNPEQRSFTTIEKEKDGTPVVSKQITTLFRDSHKRLWIGGE-EG 518 (795)
T ss_dssp ECTTTSCCSCSCEEEEEECSSSC-EEEEES-SCEEEEETTTTEEEECCBCTTCCBCCCCCEEEEEECTTCCEEEEES-SC
T ss_pred eecCCCCcCCCeeEEEEECCCCC-EEEEec-CceeEEeCCCCeEEEccccccccccCCceEEEEEECCCCCEEEEeC-Cc
Confidence 22 2345788999888887 555555 569999998877654432 236789999998888766554 44
Q ss_pred cEEEe
Q 003236 832 CVKIW 836 (837)
Q Consensus 832 ~I~IW 836 (837)
|.+|
T Consensus 519 -l~~~ 522 (795)
T 4a2l_A 519 -LSVF 522 (795)
T ss_dssp -EEEE
T ss_pred -eEEE
Confidence 5554
|
| >2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A* | Back alignment and structure |
|---|
Probab=98.89 E-value=9e-07 Score=95.48 Aligned_cols=234 Identities=10% Similarity=0.029 Sum_probs=147.3
Q ss_pred CCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEec-c------------------CCCCeEEEEEcCCCCEEEEEe
Q 003236 556 SKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLE-E------------------HTQWITDVRFSPSLSRLATSS 616 (837)
Q Consensus 556 ~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~-~------------------h~~~I~~l~fspdg~~Latgs 616 (837)
....+++|+++|++++++..++.|..|+..++....... . ....+..+++.++...|+++.
T Consensus 19 ~~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~l~v~d 98 (322)
T 2fp8_A 19 YAPNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQLYIVD 98 (322)
T ss_dssp SCCCCEECCTTCSSEEEECTTSEEEEECCTTTCEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTEEEEEE
T ss_pred CCceEEEEcCCCCEEEEEcCCCeEEEECCCCCceEEEecccccccccccccccchhccccCCCCceEEEcCCCCcEEEEE
Confidence 345678999999878888889999999987654432110 0 113578999997334566665
Q ss_pred CCCeEEEEEcCCCCceeEEeec-----cccceEEEEEcC-CCCeEEEEEeC-----------------CCcEEEEECCCC
Q 003236 617 ADRTVRVWDTENPDYSLRTFTG-----HSTTVMSLDFHP-SKEDLLCSCDN-----------------NSEIRYWSINNG 673 (837)
Q Consensus 617 ~Dg~I~IWDl~~~~~~~~~~~~-----h~~~V~sl~fsp-dg~~llasgs~-----------------Dg~I~vwDl~t~ 673 (837)
..+.|.++|..++.. ..+.. .......+++.+ +|. ++++... ++.|..||..++
T Consensus 99 ~~~~i~~~d~~~g~~--~~~~~~~~~~~~~~p~~i~~d~~~G~-l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~ 175 (322)
T 2fp8_A 99 CYYHLSVVGSEGGHA--TQLATSVDGVPFKWLYAVTVDQRTGI-VYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTK 175 (322)
T ss_dssp TTTEEEEECTTCEEC--EEEESEETTEECSCEEEEEECTTTCC-EEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTT
T ss_pred CCCCEEEEeCCCCEE--EEecccCCCCcccccceEEEecCCCE-EEEECCcccccccccceehcccCCCceEEEEeCCCC
Confidence 556688888775432 22211 113468899999 876 4444321 367999998877
Q ss_pred eeeeEEecCCCeeEEEEecCCCEEEEEEc-CCeEEEEECCCC---eEEEEEcCCCCCEEEEEEcCCCCEEEEEeC-----
Q 003236 674 SCAGVFKCQSGATQMRFQPRLGRILAAAI-ENYISILDVETQ---VCRLKLQGHKNQVHSVCWNTSGEYLASVSD----- 744 (837)
Q Consensus 674 ~~i~~~~~~~~i~sl~~sp~g~~llags~-dg~I~iwDl~s~---~~~~~l~~h~~~V~sl~~spdg~~LasgsD----- 744 (837)
+.............++++++++.++++.. .+.|.+|++... ... .+....+ ...++++++|.++++...
T Consensus 176 ~~~~~~~~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~-~~~~~~g-P~gi~~d~~G~l~va~~~~~~~~ 253 (322)
T 2fp8_A 176 ETTLLLKELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAE-VLVKIPN-PGNIKRNADGHFWVSSSEELDGN 253 (322)
T ss_dssp EEEEEEEEESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEE-EEEECSS-EEEEEECTTSCEEEEEEEETTSS
T ss_pred EEEEeccCCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccc-eEEeCCC-CCCeEECCCCCEEEEecCccccc
Confidence 65544443355678999999997777754 589999998742 211 1111223 788999999987776543
Q ss_pred ------CeEEEEEcCCCCCceeEEEeecCC----CceEEEEEeCCCCEEEEEE-cCCeEEEEECCCC
Q 003236 745 ------ELVRVWSIGSGSKGECIHELSCTG----NKFHSCVFHPTFPSLLVIG-CYETLELWNMTEN 800 (837)
Q Consensus 745 ------g~I~IwDl~s~~~~~~i~~~~~~~----~~I~sv~fspdg~~L~sgs-~dg~I~IwDl~s~ 800 (837)
+.|.++|.. + +.+..+.... ..+..+++. ++ .|++++ .++.|.++++...
T Consensus 254 ~~~~~~~~v~~~d~~-G---~~~~~~~~~~g~~~~~~~~~~~~-~g-~L~v~~~~~~~i~~~~~~~~ 314 (322)
T 2fp8_A 254 MHGRVDPKGIKFDEF-G---NILEVIPLPPPFAGEHFEQIQEH-DG-LLYIGTLFHGSVGILVYDKK 314 (322)
T ss_dssp TTSCEEEEEEEECTT-S---CEEEEEECCTTTTTSCCCEEEEE-TT-EEEEECSSCSEEEEEEC---
T ss_pred ccCCCccEEEEECCC-C---CEEEEEECCCCCccccceEEEEe-CC-EEEEeecCCCceEEEecccc
Confidence 457777753 3 3444444322 345666663 44 455554 5668888887644
|
| >1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A* | Back alignment and structure |
|---|
Probab=98.89 E-value=3.3e-07 Score=107.80 Aligned_cols=265 Identities=9% Similarity=0.036 Sum_probs=166.0
Q ss_pred CCEEEEEEC-CCcEEEEeC-CCCeEEEEeccCCCC-----------eEEEEEcCCCCE----EEEEeCCCeEEEEEcCCC
Q 003236 567 GKLLATGGH-DKKAVLWCT-ESFTVKSTLEEHTQW-----------ITDVRFSPSLSR----LATSSADRTVRVWDTENP 629 (837)
Q Consensus 567 g~~Lasgs~-Dg~I~VWd~-~t~~~~~~l~~h~~~-----------I~~l~fspdg~~----Latgs~Dg~I~IWDl~~~ 629 (837)
+..|++++. ++.|+.+|. .+++.+-.+...... ...+++.|.+.. |++++.|+.|..+|..++
T Consensus 62 ~g~vyv~~~~~~~v~AlD~~~tG~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p~~g~~~~rV~v~t~dg~l~AlDa~TG 141 (599)
T 1w6s_A 62 DGKMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQLDGNVAALNAETG 141 (599)
T ss_dssp TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECTTSEEEEEETTTC
T ss_pred CCEEEEEeCCCCEEEEEeCCCCCcEEEEECCCCCccccccccccccccceEEEecCCcceeEEEEEcCCCEEEEEECCCC
Confidence 446666776 889999999 899998776532211 123455443444 888889999999999998
Q ss_pred CceeEEeecc-c--cceEE-EEEcCCCCeEEEEEe-----CCCcEEEEECCCCeeeeEEecCCCe---------------
Q 003236 630 DYSLRTFTGH-S--TTVMS-LDFHPSKEDLLCSCD-----NNSEIRYWSINNGSCAGVFKCQSGA--------------- 685 (837)
Q Consensus 630 ~~~~~~~~~h-~--~~V~s-l~fspdg~~llasgs-----~Dg~I~vwDl~t~~~i~~~~~~~~i--------------- 685 (837)
+...+.-... . ..+.+ ..+. + ..+++.++ .++.|+.+|.++|+.+..+......
T Consensus 142 ~~~W~~~~~~~~~~~~~~ssP~v~-~-g~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~~~~~~~~~~~p~~~~~~~~ 219 (599)
T 1w6s_A 142 ETVWKVENSDIKVGSTLTIAPYVV-K-DKVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYATGPDKDLLLASDFNIKNPH 219 (599)
T ss_dssp CEEEEEECCCGGGTCBCCSCCEEE-T-TEEEECCBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGG
T ss_pred CEEEeecCCCCCccceeecCCEEE-C-CEEEEEecccccCCCCeEEEEECCCCcEEEEEcCCCCcccccccccccccccc
Confidence 8643322211 0 01211 1111 2 33443332 3789999999999999888754322
Q ss_pred ------------------------eEEEEecCCCEEEEEEcC----------------CeEEEEECCCCeEEEEEcCCCC
Q 003236 686 ------------------------TQMRFQPRLGRILAAAIE----------------NYISILDVETQVCRLKLQGHKN 725 (837)
Q Consensus 686 ------------------------~sl~~sp~g~~llags~d----------------g~I~iwDl~s~~~~~~l~~h~~ 725 (837)
..+.+.+..+.++++..+ +.|..+|.++++.+..+.....
T Consensus 220 ~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~W~~q~~~~ 299 (599)
T 1w6s_A 220 YGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKTPH 299 (599)
T ss_dssp GCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESSTT
T ss_pred ccccccccccCCCcceecCCCccccceeEeCCCCEEEEeCCCCccccCcccCCCccccceEEEEeCCCCceeeEeecCCC
Confidence 135677788888888765 3899999999999888764221
Q ss_pred ----------CEEEEEEc-CCC---CEEEEEe-CCeEEEEEcCCCCCceeEEEeecC-------------CCc-------
Q 003236 726 ----------QVHSVCWN-TSG---EYLASVS-DELVRVWSIGSGSKGECIHELSCT-------------GNK------- 770 (837)
Q Consensus 726 ----------~V~sl~~s-pdg---~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~-------------~~~------- 770 (837)
++. +... .+| ..++.++ +|.|+++|..+++ .+...... ..+
T Consensus 300 d~wd~d~~~~p~l-~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~---~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~ 375 (599)
T 1w6s_A 300 DEWDYAGVNVMML-SEQKDKDGKARKLLTHPDRNGIVYTLDRTDGA---LVSANKLDDTVNVFKSVDLKTGQPVRDPEYG 375 (599)
T ss_dssp CSSCCCCCCCCEE-EEEECTTSCEEEEEEEECTTSEEEEEETTTCC---EEEEEESSTTCCSEEEECTTTCCEEECGGGC
T ss_pred ccccccCCCccEE-EeccccCCcEEEEEEEECCCcEEEEEECCCCC---EeecccccCCcccccccccCCCceeeccccC
Confidence 121 2222 467 4566666 9999999999884 33332211 111
Q ss_pred -------------------eEEEEEeCCCCEEEEEE---------------------------------------cCCeE
Q 003236 771 -------------------FHSCVFHPTFPSLLVIG---------------------------------------CYETL 792 (837)
Q Consensus 771 -------------------I~sv~fspdg~~L~sgs---------------------------------------~dg~I 792 (837)
-..++++|+...+++.. .++.|
T Consensus 376 ~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~p~~~~~~~~~~G~l 455 (599)
T 1w6s_A 376 TRMDHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDWEPFMLPYKAGQFFVGATLNMYPGPKGDRQNYEGLGQI 455 (599)
T ss_dssp CCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSBTTTTBCCEEE
T ss_pred CCCCCCccEeccCcccccCCCCccCCCCCCEEEEeccccceeeecccccccCCcceecccceeccCCcCCcccCCCcCeE
Confidence 12456777766655532 23689
Q ss_pred EEEECCCCcEEEeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 003236 793 ELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 837 (837)
Q Consensus 793 ~IwDl~s~~~~~l~~h~~~V~sla~spdg~~LaSgs~DG~I~IWd 837 (837)
..||+.+++.+-...+..++..-.+...+.+|+.++.||.|+.||
T Consensus 456 ~A~D~~tG~~~W~~~~~~~~~~g~~~tagg~vf~gt~dg~l~A~D 500 (599)
T 1w6s_A 456 KAYNAITGDYKWEKMERFAVWGGTMATAGDLVFYGTLDGYLKARD 500 (599)
T ss_dssp EEECTTTCCEEEEEEESSCCCSBCEEETTTEEEEECTTSEEEEEE
T ss_pred EEEECCCCCEEeEecCCCCccCcceEecCCEEEEECCCCeEEEEE
Confidence 999999998872222222222212233567788889999999876
|
| >2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3 | Back alignment and structure |
|---|
Probab=98.85 E-value=2.1e-06 Score=92.09 Aligned_cols=233 Identities=9% Similarity=0.016 Sum_probs=145.5
Q ss_pred CeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeEEeeccccceEEEEEcCCCCeEEEEEe-CCC-c
Q 003236 587 FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCD-NNS-E 664 (837)
Q Consensus 587 ~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~sl~fspdg~~llasgs-~Dg-~ 664 (837)
.+.+..+... .....++|+++++++++-..++.|..||..... ...+ .....+.++++.+++. ++++.. .++ .
T Consensus 22 ~~~~~~~p~~-~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~~--~~~~-~~~~~p~gia~~~dG~-l~vad~~~~~~~ 96 (306)
T 2p4o_A 22 AKIITSFPVN-TFLENLASAPDGTIFVTNHEVGEIVSITPDGNQ--QIHA-TVEGKVSGLAFTSNGD-LVATGWNADSIP 96 (306)
T ss_dssp EEEEEEECTT-CCEEEEEECTTSCEEEEETTTTEEEEECTTCCE--EEEE-ECSSEEEEEEECTTSC-EEEEEECTTSCE
T ss_pred ceEeEeCCCC-CCcceEEECCCCCEEEEeCCCCeEEEECCCCce--EEEE-eCCCCceeEEEcCCCc-EEEEeccCCcce
Confidence 4455555432 567899999999877776678999999987532 2222 2345688999999987 444433 222 4
Q ss_pred EEEEECCCCeeeeEEecC--CCeeEEEEecCCCEEEEEE-cCCeEEEEECCCCeE-EEEEc---------CCCCCEEEEE
Q 003236 665 IRYWSINNGSCAGVFKCQ--SGATQMRFQPRLGRILAAA-IENYISILDVETQVC-RLKLQ---------GHKNQVHSVC 731 (837)
Q Consensus 665 I~vwDl~t~~~i~~~~~~--~~i~sl~~sp~g~~llags-~dg~I~iwDl~s~~~-~~~l~---------~h~~~V~sl~ 731 (837)
|..+|..+++........ .....++..+ +..++++. .++.|+++|...+.. +.... ..-.....|
T Consensus 97 v~~~d~~~g~~~~~~~~~~~~~~~g~~~~~-~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi- 174 (306)
T 2p4o_A 97 VVSLVKSDGTVETLLTLPDAIFLNGITPLS-DTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL- 174 (306)
T ss_dssp EEEEECTTSCEEEEEECTTCSCEEEEEESS-SSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE-
T ss_pred EEEEcCCCCeEEEEEeCCCccccCcccccC-CCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc-
Confidence 777888887765444332 2234445444 34555555 478999999876532 22111 111234556
Q ss_pred EcCCCCEEEEEe--CCeEEEEEcCC-CCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEEE---e
Q 003236 732 WNTSGEYLASVS--DELVRVWSIGS-GSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLT---L 805 (837)
Q Consensus 732 ~spdg~~Lasgs--Dg~I~IwDl~s-~~~~~~i~~~~~~~~~I~sv~fspdg~~L~sgs~dg~I~IwDl~s~~~~~---l 805 (837)
++++.+|+++. .+.|.+|++.. +.. .....+.. ......++++++|..+++....+.|.+||.. ++... +
T Consensus 175 -s~dg~~lyv~d~~~~~I~~~~~~~~g~~-~~~~~~~~-~~~P~gi~vd~dG~l~va~~~~~~V~~~~~~-G~~~~~~~~ 250 (306)
T 2p4o_A 175 -KRFGNFLYVSNTEKMLLLRIPVDSTDKP-GEPEIFVE-QTNIDDFAFDVEGNLYGATHIYNSVVRIAPD-RSTTIIAQA 250 (306)
T ss_dssp -EEETTEEEEEETTTTEEEEEEBCTTSCB-CCCEEEEE-SCCCSSEEEBTTCCEEEECBTTCCEEEECTT-CCEEEEECG
T ss_pred -CcCCCEEEEEeCCCCEEEEEEeCCCCCC-CccEEEec-cCCCCCeEECCCCCEEEEeCCCCeEEEECCC-CCEEEEeec
Confidence 78888777766 77999999875 221 11111111 1345678999999865555557799999975 55532 2
Q ss_pred ccCCCCeeEEEEe---CCCCEEEEEECC
Q 003236 806 SAHDKLVSSLAAS---TVNGMVASASHD 830 (837)
Q Consensus 806 ~~h~~~V~sla~s---pdg~~LaSgs~D 830 (837)
......+++++|. ++++.|+.++..
T Consensus 251 ~~~~~~p~~~a~~g~~~d~~~LyVt~~~ 278 (306)
T 2p4o_A 251 EQGVIGSTAVAFGQTEGDCTAIYVVTNG 278 (306)
T ss_dssp GGTCTTEEEEEECCSTTTTTEEEEEECT
T ss_pred ccccCCceEEEEecccCCCCEEEEECCC
Confidence 2233568999998 888777766543
|
| >2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A* | Back alignment and structure |
|---|
Probab=98.84 E-value=1.3e-06 Score=94.11 Aligned_cols=232 Identities=9% Similarity=0.005 Sum_probs=145.8
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeEEeec--------------------cccceEEEEEcCCCCeEEE
Q 003236 598 QWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTG--------------------HSTTVMSLDFHPSKEDLLC 657 (837)
Q Consensus 598 ~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~~~~~~~~~~~--------------------h~~~V~sl~fspdg~~lla 657 (837)
....+++|++++++++++..++.|..||..+... ..+.. ....+.++++.+++..+++
T Consensus 19 ~~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~--~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~l~v 96 (322)
T 2fp8_A 19 YAPNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGF--VDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQLYI 96 (322)
T ss_dssp SCCCCEECCTTCSSEEEECTTSEEEEECCTTTCE--EEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTEEEE
T ss_pred CCceEEEEcCCCCEEEEEcCCCeEEEECCCCCce--EEEecccccccccccccccchhccccCCCCceEEEcCCCCcEEE
Confidence 3467888999998888888999999999876543 22210 1135788999973344554
Q ss_pred EEeCCCcEEEEECCCCeeeeEEec-----CCCeeEEEEec-CCCEEEEEEc-----------------CCeEEEEECCCC
Q 003236 658 SCDNNSEIRYWSINNGSCAGVFKC-----QSGATQMRFQP-RLGRILAAAI-----------------ENYISILDVETQ 714 (837)
Q Consensus 658 sgs~Dg~I~vwDl~t~~~i~~~~~-----~~~i~sl~~sp-~g~~llags~-----------------dg~I~iwDl~s~ 714 (837)
+ ...+.|..+|..++........ ......+++.+ ++..+++... ++.|..||..++
T Consensus 97 ~-d~~~~i~~~d~~~g~~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~ 175 (322)
T 2fp8_A 97 V-DCYYHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTK 175 (322)
T ss_dssp E-ETTTEEEEECTTCEECEEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTT
T ss_pred E-ECCCCEEEEeCCCCEEEEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCCC
Confidence 4 3345588888876543222111 13467899999 7765554322 367999998877
Q ss_pred eEEEEEcCCCCCEEEEEEcCCCCEEEEEe--CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEc----
Q 003236 715 VCRLKLQGHKNQVHSVCWNTSGEYLASVS--DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGC---- 788 (837)
Q Consensus 715 ~~~~~l~~h~~~V~sl~~spdg~~Lasgs--Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fspdg~~L~sgs~---- 788 (837)
+....... ......|+|++++++|+++. .+.|.+|++....... ...+..... ...++++++|..+++...
T Consensus 176 ~~~~~~~~-~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~-~~~~~~~~g-P~gi~~d~~G~l~va~~~~~~~ 252 (322)
T 2fp8_A 176 ETTLLLKE-LHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGT-AEVLVKIPN-PGNIKRNADGHFWVSSSEELDG 252 (322)
T ss_dssp EEEEEEEE-ESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTC-EEEEEECSS-EEEEEECTTSCEEEEEEEETTS
T ss_pred EEEEeccC-CccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCc-cceEEeCCC-CCCeEECCCCCEEEEecCcccc
Confidence 54332221 23456799999999776664 6799999987532111 111111223 788999999985555444
Q ss_pred ------CCeEEEEECCCCcEE-EeccC----CCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 003236 789 ------YETLELWNMTENKTL-TLSAH----DKLVSSLAASTVNGMVASASHDKCVKIWK 837 (837)
Q Consensus 789 ------dg~I~IwDl~s~~~~-~l~~h----~~~V~sla~spdg~~LaSgs~DG~I~IWd 837 (837)
.+.|..+|.. ++.+ .+... ...++++++ .++.++++....+.|.+++
T Consensus 253 ~~~~~~~~~v~~~d~~-G~~~~~~~~~~g~~~~~~~~~~~-~~g~L~v~~~~~~~i~~~~ 310 (322)
T 2fp8_A 253 NMHGRVDPKGIKFDEF-GNILEVIPLPPPFAGEHFEQIQE-HDGLLYIGTLFHGSVGILV 310 (322)
T ss_dssp STTSCEEEEEEEECTT-SCEEEEEECCTTTTTSCCCEEEE-ETTEEEEECSSCSEEEEEE
T ss_pred cccCCCccEEEEECCC-CCEEEEEECCCCCccccceEEEE-eCCEEEEeecCCCceEEEe
Confidence 4678889875 5554 33322 245777777 3566666655677777653
|
| >3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=98.82 E-value=5.5e-06 Score=100.72 Aligned_cols=274 Identities=8% Similarity=-0.060 Sum_probs=176.8
Q ss_pred CCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEec--------------cCCCCeEEEEEcCCCCEEEEEeCCCe
Q 003236 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLE--------------EHTQWITDVRFSPSLSRLATSSADRT 620 (837)
Q Consensus 555 ~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~--------------~h~~~I~~l~fspdg~~Latgs~Dg~ 620 (837)
...|.++...++|. |..|+..+-|.++|..+........ .....|.++....+|. |..|+.++-
T Consensus 257 ~~~i~~i~~d~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D~~g~-lWigt~~~G 334 (781)
T 3v9f_A 257 SSYIFSIKQLKDNK-LWIATELNGIMILDLQQNQFLLPEQIRFEFIREGDNNYSLSNASARYIFQDSFNN-IWIGTWGGG 334 (781)
T ss_dssp CCCEEEEEECTTSE-EEEEESSSCEEEEETTCC---------CEEECBCSSTTSBSSSCEEEEEECSSCC-EEEEEBSSC
T ss_pred CceEEEEEECCCCC-EEEEeCCCCeEEECCCCCeeeeeeccccccccCCCCCCCCCCCeEEEEEEeCCCC-EEEEecCCe
Confidence 45699999988885 5556665678899987655432211 1345799999988876 666777777
Q ss_pred EEEEEcCCCCceeEEe--------eccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeeEEe----cCCCeeEE
Q 003236 621 VRVWDTENPDYSLRTF--------TGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK----CQSGATQM 688 (837)
Q Consensus 621 I~IWDl~~~~~~~~~~--------~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~----~~~~i~sl 688 (837)
|..|+..+........ .-....|.++...+++. + ..|+.++.|.+||..++....... ....|.++
T Consensus 335 l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~-l-Wigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~v~~i 412 (781)
T 3v9f_A 335 INFISNAPPTFHTWSYSPTQMNESSLSNKVVSSVCDDGQGK-L-WIGTDGGGINVFENGKRVAIYNKENRELLSNSVLCS 412 (781)
T ss_dssp EEEECSSCCSCEEEC----CCCSSCCSSSCEEEEEECTTSC-E-EEEEBSSCEEEEETTEEEEECC-----CCCSBEEEE
T ss_pred EEEeCCCCCcceeeccCccccccCCCCCcceEEEEEcCCCC-E-EEEeCCCcEEEEECCCCeEEEccCCCCCCCcceEEE
Confidence 8999887654322111 01235689999888765 3 345556679999987654332211 12457778
Q ss_pred EEecCCCEEEEEEcCCeEEEEECCCCeEEEEEc--CCCCCEEEEEEcCCCCEEEEEeCCeEEEEEcCCCCCceeEEEee-
Q 003236 689 RFQPRLGRILAAAIENYISILDVETQVCRLKLQ--GHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELS- 765 (837)
Q Consensus 689 ~~sp~g~~llags~dg~I~iwDl~s~~~~~~l~--~h~~~V~sl~~spdg~~LasgsDg~I~IwDl~s~~~~~~i~~~~- 765 (837)
...+++. |.+|+.++.|..||..+++...... .....|.++..++++.+.+++. +.|.+||..++.. ..+....
T Consensus 413 ~~d~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lwigt~-~Gl~~~~~~~~~~-~~~~~~~~ 489 (781)
T 3v9f_A 413 LKDSEGN-LWFGTYLGNISYYNTRLKKFQIIELEKNELLDVRVFYEDKNKKIWIGTH-AGVFVIDLASKKV-IHHYDTSN 489 (781)
T ss_dssp EECTTSC-EEEEETTEEEEEECSSSCEEEECCSTTTCCCCEEEEEECTTSEEEEEET-TEEEEEESSSSSC-CEEECTTT
T ss_pred EECCCCC-EEEEeccCCEEEEcCCCCcEEEeccCCCCCCeEEEEEECCCCCEEEEEC-CceEEEeCCCCeE-EecccCcc
Confidence 7776654 6667777889999988775443221 1346799999988887666554 6699999876532 1111111
Q ss_pred --cCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEEEecc----CCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 003236 766 --CTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSA----HDKLVSSLAASTVNGMVASASHDKCVKIWK 837 (837)
Q Consensus 766 --~~~~~I~sv~fspdg~~L~sgs~dg~I~IwDl~s~~~~~l~~----h~~~V~sla~spdg~~LaSgs~DG~I~IWd 837 (837)
.....|.++...++|. |.+++.++-|..||..+++...+.. ....|.++...++|.+.++. .+|.|..||
T Consensus 490 ~~~~~~~i~~i~~d~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi~T-~~Glv~~~d 565 (781)
T 3v9f_A 490 SQLLENFVRSIAQDSEGR-FWIGTFGGGVGIYTPDMQLVRKFNQYEGFCSNTINQIYRSSKGQMWLAT-GEGLVCFPS 565 (781)
T ss_dssp SSCSCSCEEEEEECTTCC-EEEEESSSCEEEECTTCCEEEEECTTTTCSCSCEEEEEECTTSCEEEEE-TTEEEEESC
T ss_pred cccccceeEEEEEcCCCC-EEEEEcCCCEEEEeCCCCeEEEccCCCCCCCCeeEEEEECCCCCEEEEE-CCCceEEEC
Confidence 1136788999998887 5666665568889988877665432 23568899988888866654 466546654
|
| >2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A* | Back alignment and structure |
|---|
Probab=98.80 E-value=8.7e-07 Score=93.17 Aligned_cols=186 Identities=10% Similarity=0.018 Sum_probs=128.3
Q ss_pred ceEEEEEcCCCCeEEEEEeC--CCcEEEEECCCCeeeeEEecCCCeeEEEEecCCCEEEEEEc-CCeEEEEECCCCeEEE
Q 003236 642 TVMSLDFHPSKEDLLCSCDN--NSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAI-ENYISILDVETQVCRL 718 (837)
Q Consensus 642 ~V~sl~fspdg~~llasgs~--Dg~I~vwDl~t~~~i~~~~~~~~i~sl~~sp~g~~llags~-dg~I~iwDl~s~~~~~ 718 (837)
....+.|++++ .++++.+. ++.|.++|+.+++.+..+..........+..+++.++.+.. ++.+.++|..+.+.+.
T Consensus 22 f~~Gl~~~~dg-~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~g~~lyv~t~~~~~v~viD~~t~~v~~ 100 (266)
T 2iwa_A 22 FTQGLVYAEND-TLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLLNEKLYQVVWLKNIGFIYDRRTLSNIK 100 (266)
T ss_dssp CEEEEEECSTT-EEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEEETTCSEEEEEETTTTEEEE
T ss_pred CcccEEEeCCC-eEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEeCCEEEEEEecCCEEEEEECCCCcEEE
Confidence 46799999985 56655543 57999999999999998876554443334444667777765 6899999999999988
Q ss_pred EEcCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecC--C---CceEEEEEeCCCCEEEEEE-cCCe
Q 003236 719 KLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCT--G---NKFHSCVFHPTFPSLLVIG-CYET 791 (837)
Q Consensus 719 ~l~~h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~--~---~~I~sv~fspdg~~L~sgs-~dg~ 791 (837)
++...... ...+++|+..|+++. ++.|.++|..+.. .+..+... . ..+..+.|. ++ .+++.. .++.
T Consensus 101 ~i~~g~~~--g~glt~Dg~~l~vs~gs~~l~viD~~t~~---v~~~I~Vg~~~~p~~~~nele~~-dg-~lyvn~~~~~~ 173 (266)
T 2iwa_A 101 NFTHQMKD--GWGLATDGKILYGSDGTSILYEIDPHTFK---LIKKHNVKYNGHRVIRLNELEYI-NG-EVWANIWQTDC 173 (266)
T ss_dssp EEECCSSS--CCEEEECSSSEEEECSSSEEEEECTTTCC---EEEEEECEETTEECCCEEEEEEE-TT-EEEEEETTSSE
T ss_pred EEECCCCC--eEEEEECCCEEEEECCCCeEEEEECCCCc---EEEEEEECCCCcccccceeEEEE-CC-EEEEecCCCCe
Confidence 88633111 233556777777666 7899999998873 44443321 1 235677888 66 455555 4679
Q ss_pred EEEEECCCCcEEEeccC--------------CCCeeEEEEeCCCCEEE-EEECCCcEEE
Q 003236 792 LELWNMTENKTLTLSAH--------------DKLVSSLAASTVNGMVA-SASHDKCVKI 835 (837)
Q Consensus 792 I~IwDl~s~~~~~l~~h--------------~~~V~sla~spdg~~La-Sgs~DG~I~I 835 (837)
|.+.|..+++++....- ....+.|+|+|+++.|+ ++...+.|.+
T Consensus 174 V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~ 232 (266)
T 2iwa_A 174 IARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFE 232 (266)
T ss_dssp EEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEE
T ss_pred EEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEE
Confidence 99999999998732211 13568999999987554 5545666654
|
| >1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=98.79 E-value=7.3e-07 Score=106.62 Aligned_cols=255 Identities=13% Similarity=0.137 Sum_probs=160.0
Q ss_pred CCEEEEEECCCcEEEEeCCCCeEEEEeccCC----CCeEE-EEEcCCCCEEEEEeC------CCeEEEEEcCCCCceeEE
Q 003236 567 GKLLATGGHDKKAVLWCTESFTVKSTLEEHT----QWITD-VRFSPSLSRLATSSA------DRTVRVWDTENPDYSLRT 635 (837)
Q Consensus 567 g~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~----~~I~~-l~fspdg~~Latgs~------Dg~I~IWDl~~~~~~~~~ 635 (837)
+..|++++.|+.|+.+|.++++.+..+.... ..+.+ ..+. ++ .+++++. +|.|+.||..+++..-..
T Consensus 117 ~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v~-~~-~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~ 194 (668)
T 1kv9_A 117 GDKVYVGTLDGRLIALDAKTGKAIWSQQTTDPAKPYSITGAPRVV-KG-KVIIGNGGAEYGVRGFVSAYDADTGKLAWRF 194 (668)
T ss_dssp BTEEEEECTTSEEEEEETTTCCEEEEEECSCTTSSCBCCSCCEEE-TT-EEEECCBCTTTCCBCEEEEEETTTCCEEEEE
T ss_pred CCEEEEEcCCCEEEEEECCCCCEeeeeccCCCCCcceecCCCEEE-CC-EEEEeCCCCCcCCCCEEEEEECCCCcEEEEe
Confidence 4578888899999999999999987765321 11111 1111 33 5555543 589999999998753332
Q ss_pred eec--c----------------------------ccceEEEEEcCCCCeEEEEEeCCC-------------------cEE
Q 003236 636 FTG--H----------------------------STTVMSLDFHPSKEDLLCSCDNNS-------------------EIR 666 (837)
Q Consensus 636 ~~~--h----------------------------~~~V~sl~fspdg~~llasgs~Dg-------------------~I~ 666 (837)
... . ......++++++.+ +++.+..++ .|.
T Consensus 195 ~~~~~~p~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~~~~-~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~ 273 (668)
T 1kv9_A 195 YTVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELD-LLYVGTGNGSPWNREVRSPGGGDNLYLSSIL 273 (668)
T ss_dssp ESSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTT-EEEEECCCEESSCHHHHSTTCCCCTTTTEEE
T ss_pred cccCCCCCccccccccccccccCCccceeeeCCCCccccceEEcCCCC-EEEEeCCCCCccccCCCCCCCCCceeeeeEE
Confidence 211 0 01112467888766 444555454 499
Q ss_pred EEECCCCeeeeEEecC----------CCeeEEEEecCCC---EEEEEEcCCeEEEEECCCCeEEEEEcCCCC--------
Q 003236 667 YWSINNGSCAGVFKCQ----------SGATQMRFQPRLG---RILAAAIENYISILDVETQVCRLKLQGHKN-------- 725 (837)
Q Consensus 667 vwDl~t~~~i~~~~~~----------~~i~sl~~sp~g~---~llags~dg~I~iwDl~s~~~~~~l~~h~~-------- 725 (837)
.+|.++++.+..+... .......+..+++ .+++++.+|.++++|.++++.+..+.....
T Consensus 274 AlD~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~d~ 353 (668)
T 1kv9_A 274 AIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDL 353 (668)
T ss_dssp EECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECT
T ss_pred EEcCCCCceeeEeecCCCccccccCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCEecccccccccccccccc
Confidence 9999999999888752 1222333334554 588888999999999999988754432210
Q ss_pred ----CE------------------------EEEEEcCCCCEEEEE-----------------------------------
Q 003236 726 ----QV------------------------HSVCWNTSGEYLASV----------------------------------- 742 (837)
Q Consensus 726 ----~V------------------------~sl~~spdg~~Lasg----------------------------------- 742 (837)
++ ..++++|+..++++.
T Consensus 354 ~~g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~ 433 (668)
T 1kv9_A 354 ATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPA 433 (668)
T ss_dssp TTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCG
T ss_pred ccCCccccccccccCCeeEECCCCccccCCCcceECCCCCEEEEeccccceEeeeeccccccccccccCccccccCCCCC
Confidence 00 125777776665541
Q ss_pred -e-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE-EeccCCCCe-eEEEEe
Q 003236 743 -S-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLV-SSLAAS 818 (837)
Q Consensus 743 -s-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fspdg~~L~sgs~dg~I~IwDl~s~~~~-~l~~h~~~V-~sla~s 818 (837)
. ++.|..||+.++ +.+...... .......+...+..+++++.|+.|++||.++++.+ .+....... .-+.+.
T Consensus 434 ~~~~g~l~A~D~~tG---~~~W~~~~~-~~~~~~~~~t~gg~vf~g~~dg~l~a~d~~tG~~l~~~~~~~~~~~~p~~~~ 509 (668)
T 1kv9_A 434 AVVSGALLAWDPVKQ---KAAWKVPYP-THWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEALWQFEAQSGIVAAPMTFE 509 (668)
T ss_dssp GGCEEEEEEEETTTT---EEEEEEEES-SSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEE
T ss_pred CCccceEEEEeCCCC---cEEEEccCC-CCCcCceeEeCCCEEEEECCcccchhhhhhcChhheEecCCCCcccCceEEE
Confidence 1 377999999988 555444432 23333445557788999999999999999999988 333322111 233445
Q ss_pred CCCC-EEEEEE
Q 003236 819 TVNG-MVASAS 828 (837)
Q Consensus 819 pdg~-~LaSgs 828 (837)
.+|+ +++.++
T Consensus 510 ~~G~~yva~~~ 520 (668)
T 1kv9_A 510 LAGRQYVAIMA 520 (668)
T ss_dssp ETTEEEEEEEE
T ss_pred ECCEEEEEEEe
Confidence 5676 454444
|
| >3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A | Back alignment and structure |
|---|
Probab=98.78 E-value=7.8e-07 Score=92.74 Aligned_cols=192 Identities=12% Similarity=0.130 Sum_probs=134.7
Q ss_pred eEEEEeccCCC--CeEEEEEcCCCCEEEEEeCCC--eEEEEEcCCCCceeEEeeccccceEEEEEcCCCCeEEEEEeCCC
Q 003236 588 TVKSTLEEHTQ--WITDVRFSPSLSRLATSSADR--TVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNS 663 (837)
Q Consensus 588 ~~~~~l~~h~~--~I~~l~fspdg~~Latgs~Dg--~I~IWDl~~~~~~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg 663 (837)
+.+.++. |.. ....+.|+ ++.++.+.+.+| .|+++|+.+++. +..+.- ..........++++.+++..-.++
T Consensus 32 ~vv~~~p-hd~~~ftqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv-~~~~~l-~~~~FgeGit~~g~~ly~ltw~~~ 107 (262)
T 3nol_A 32 QIVHSYP-HDTKAFTEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKT-LQQIEL-GKRYFGEGISDWKDKIVGLTWKNG 107 (262)
T ss_dssp EEEEEEE-CCTTCEEEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCE-EEEEEC-CTTCCEEEEEEETTEEEEEESSSS
T ss_pred EEEEEec-CCCCcccceEEEE-CCEEEEECCCCCCceEEEEECCCCcE-EEEEec-CCccceeEEEEeCCEEEEEEeeCC
Confidence 3455553 443 35788898 666666666665 899999999875 333332 223333223334567777777799
Q ss_pred cEEEEECCCCeeeeEEecCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEcCCC-----CCEEEEEEcCCCCE
Q 003236 664 EIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHK-----NQVHSVCWNTSGEY 738 (837)
Q Consensus 664 ~I~vwDl~t~~~i~~~~~~~~i~sl~~sp~g~~llags~dg~I~iwDl~s~~~~~~l~~h~-----~~V~sl~~spdg~~ 738 (837)
.+.+||..+.+.+..+.....- ..++++++.|+.+..++.|.++|..+.+.+..+.... ..++.+.|. +|++
T Consensus 108 ~v~v~D~~t~~~~~ti~~~~eG--~glt~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~-~G~l 184 (262)
T 3nol_A 108 LGFVWNIRNLRQVRSFNYDGEG--WGLTHNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV-DGEI 184 (262)
T ss_dssp EEEEEETTTCCEEEEEECSSCC--CCEEECSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE-TTEE
T ss_pred EEEEEECccCcEEEEEECCCCc--eEEecCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE-CCEE
Confidence 9999999999999999875433 3444677888888778899999999988877765421 345567776 7766
Q ss_pred EEEEe-CCeEEEEEcCCCCCceeEEEeecC------------CCceEEEEEeCCCCEEEEEEcC
Q 003236 739 LASVS-DELVRVWSIGSGSKGECIHELSCT------------GNKFHSCVFHPTFPSLLVIGCY 789 (837)
Q Consensus 739 Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~------------~~~I~sv~fspdg~~L~sgs~d 789 (837)
++... ++.|.+.|..++ +.+..+... ....+.++|+|+++.|++.+..
T Consensus 185 yan~w~~~~I~vIDp~tG---~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK~ 245 (262)
T 3nol_A 185 FANVWQTNKIVRIDPETG---KVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGKL 245 (262)
T ss_dssp EEEETTSSEEEEECTTTC---BEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEETT
T ss_pred EEEEccCCeEEEEECCCC---cEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECCC
Confidence 65555 789999999998 455444331 2456899999999888888764
|
| >2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3 | Back alignment and structure |
|---|
Probab=98.75 E-value=1.2e-05 Score=86.21 Aligned_cols=237 Identities=9% Similarity=0.022 Sum_probs=146.2
Q ss_pred eeEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCC-C-eEE
Q 003236 545 FTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSAD-R-TVR 622 (837)
Q Consensus 545 ~~~~~~l~~H~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~D-g-~I~ 622 (837)
.+.+..+..+ .....++|+++|+++++-..++.|..||.+.. ....+. ....+..+++.++++++++.... + .|.
T Consensus 22 ~~~~~~~p~~-~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~-~~~~~~-~~~~p~gia~~~dG~l~vad~~~~~~~v~ 98 (306)
T 2p4o_A 22 AKIITSFPVN-TFLENLASAPDGTIFVTNHEVGEIVSITPDGN-QQIHAT-VEGKVSGLAFTSNGDLVATGWNADSIPVV 98 (306)
T ss_dssp EEEEEEECTT-CCEEEEEECTTSCEEEEETTTTEEEEECTTCC-EEEEEE-CSSEEEEEEECTTSCEEEEEECTTSCEEE
T ss_pred ceEeEeCCCC-CCcceEEECCCCCEEEEeCCCCeEEEECCCCc-eEEEEe-CCCCceeEEEcCCCcEEEEeccCCcceEE
Confidence 3445555443 45789999999997777667899999997753 333332 33568999999999866555432 2 466
Q ss_pred EEEcCCCCceeEEeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCee-eeEEe-------c---CCCeeEEEEe
Q 003236 623 VWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSC-AGVFK-------C---QSGATQMRFQ 691 (837)
Q Consensus 623 IWDl~~~~~~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~-i~~~~-------~---~~~i~sl~~s 691 (837)
.+|..+++...............++..++ ..++++...++.|+++|...++. +.... . -.....+ +
T Consensus 99 ~~d~~~g~~~~~~~~~~~~~~~g~~~~~~-~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s 175 (306)
T 2p4o_A 99 SLVKSDGTVETLLTLPDAIFLNGITPLSD-TQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL--K 175 (306)
T ss_dssp EEECTTSCEEEEEECTTCSCEEEEEESSS-SEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--E
T ss_pred EEcCCCCeEEEEEeCCCccccCcccccCC-CcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc--C
Confidence 77776655321111112223345555444 44555555688999999876532 11110 0 1123444 8
Q ss_pred cCCCEEEEEEc-CCeEEEEECCC-CeE--EEEEcCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeec
Q 003236 692 PRLGRILAAAI-ENYISILDVET-QVC--RLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSC 766 (837)
Q Consensus 692 p~g~~llags~-dg~I~iwDl~s-~~~--~~~l~~h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~ 766 (837)
++++.++++.. .+.|.+||+.. +.. ...+.. ......++++++|+++++.. .+.|.+||.. +.. ..+..+..
T Consensus 176 ~dg~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~~-~~~P~gi~vd~dG~l~va~~~~~~V~~~~~~-G~~-~~~~~~~~ 252 (306)
T 2p4o_A 176 RFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVE-QTNIDDFAFDVEGNLYGATHIYNSVVRIAPD-RST-TIIAQAEQ 252 (306)
T ss_dssp EETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEE-SCCCSSEEEBTTCCEEEECBTTCCEEEECTT-CCE-EEEECGGG
T ss_pred cCCCEEEEEeCCCCEEEEEEeCCCCCCCccEEEec-cCCCCCeEECCCCCEEEEeCCCCeEEEECCC-CCE-EEEeeccc
Confidence 88888877765 57999999874 321 111111 13456789999998766665 7789999865 311 11223333
Q ss_pred CCCceEEEEEe---CCCCEEEEEEcCC
Q 003236 767 TGNKFHSCVFH---PTFPSLLVIGCYE 790 (837)
Q Consensus 767 ~~~~I~sv~fs---pdg~~L~sgs~dg 790 (837)
.....++++|. +++..|++++..+
T Consensus 253 ~~~~p~~~a~~g~~~d~~~LyVt~~~~ 279 (306)
T 2p4o_A 253 GVIGSTAVAFGQTEGDCTAIYVVTNGG 279 (306)
T ss_dssp TCTTEEEEEECCSTTTTTEEEEEECTT
T ss_pred ccCCceEEEEecccCCCCEEEEECCCC
Confidence 34668999998 8988888877654
|
| >1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 | Back alignment and structure |
|---|
Probab=98.75 E-value=3.6e-05 Score=83.05 Aligned_cols=229 Identities=8% Similarity=-0.035 Sum_probs=148.2
Q ss_pred EEEEEECCCcEEEEeCCCCeEEEEeccCCCCeEEEEEcCCCCEEEEE-eCCCeEEEEEcCCC---CceeEEeeccccceE
Q 003236 569 LLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATS-SADRTVRVWDTENP---DYSLRTFTGHSTTVM 644 (837)
Q Consensus 569 ~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latg-s~Dg~I~IWDl~~~---~~~~~~~~~h~~~V~ 644 (837)
+|+.+. ...|+..|+.+.+....+. ....+..++|++.+..|+.+ ..++.|..+++... ......+...-....
T Consensus 3 ~ll~~~-~~~I~~i~~~~~~~~~~~~-~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~ 80 (316)
T 1ijq_A 3 YLFFTN-RHEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPD 80 (316)
T ss_dssp EEEEEC-BSSEEEEETTSCCCEEEEC-SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCC
T ss_pred EEEEEC-CCeEEEEECCCcceEehhc-CCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcC
Confidence 444444 3568999988876655554 34567899999876555555 45689999998751 211222222234568
Q ss_pred EEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeeEEe-cCCCeeEEEEecCCCEEEEEEcC--CeEEEEECCCCeEEEEEc
Q 003236 645 SLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK-CQSGATQMRFQPRLGRILAAAIE--NYISILDVETQVCRLKLQ 721 (837)
Q Consensus 645 sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~-~~~~i~sl~~sp~g~~llags~d--g~I~iwDl~s~~~~~~l~ 721 (837)
.+++++.+..++++-...+.|.++|+........+. .......+++.|.++.++.+... +.|..+++..........
T Consensus 81 glavd~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~~~~~~~ 160 (316)
T 1ijq_A 81 GLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVT 160 (316)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEEC
T ss_pred EEEEeecCCeEEEEECCCCEEEEEeCCCCceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCCCeEEEEE
Confidence 899988777777777778899999998554433333 23567899999988888777754 689999886543332233
Q ss_pred CCCCCEEEEEEcCCCCEEEEEe--CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEE-cCCeEEEEECC
Q 003236 722 GHKNQVHSVCWNTSGEYLASVS--DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIG-CYETLELWNMT 798 (837)
Q Consensus 722 ~h~~~V~sl~~spdg~~Lasgs--Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fspdg~~L~sgs-~dg~I~IwDl~ 798 (837)
..-.....|+|++++..|+.+. .+.|..+|+..... ..+............+++.. ..|+++. ..+.|..+|..
T Consensus 161 ~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~~~-~~~~~~~~~~~~P~giav~~--~~ly~~d~~~~~V~~~~~~ 237 (316)
T 1ijq_A 161 ENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNR-KTILEDEKRLAHPFSLAVFE--DKVFWTDIINEAIFSANRL 237 (316)
T ss_dssp SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEEECTTTTSSEEEEEEET--TEEEEEETTTTEEEEEETT
T ss_pred CCCCCceEEEEeccCCEEEEEECCCCeEEEEecCCCce-EEEeecCCccCCcEEEEEEC--CEEEEEECCCCeEEEEeCC
Confidence 3345788999999887777766 66999999975322 22222212233456777753 4555555 45689999976
Q ss_pred CCcE
Q 003236 799 ENKT 802 (837)
Q Consensus 799 s~~~ 802 (837)
+++.
T Consensus 238 ~g~~ 241 (316)
T 1ijq_A 238 TGSD 241 (316)
T ss_dssp TCCC
T ss_pred CCcc
Confidence 6653
|
| >1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A | Back alignment and structure |
|---|
Probab=98.74 E-value=1.7e-07 Score=111.86 Aligned_cols=266 Identities=9% Similarity=0.047 Sum_probs=154.3
Q ss_pred EEEEcC-CCCEEEEEECCC-----------cEEEEeCCCCeEE--EEe-ccCCCCeEEEEEcCCCCEEEEEeC-CCeEEE
Q 003236 560 SCHFSP-DGKLLATGGHDK-----------KAVLWCTESFTVK--STL-EEHTQWITDVRFSPSLSRLATSSA-DRTVRV 623 (837)
Q Consensus 560 sl~fSp-dg~~Lasgs~Dg-----------~I~VWd~~t~~~~--~~l-~~h~~~I~~l~fspdg~~Latgs~-Dg~I~I 623 (837)
++++.+ ++++++.|+.+. .+.+||..+.+.. ..+ ..+.....++++..+++++++|+. +..+.+
T Consensus 190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~~~~v~~ 269 (656)
T 1k3i_A 190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSL 269 (656)
T ss_dssp EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEE
T ss_pred eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCCCCCEEEeCCCCCCceEE
Confidence 566777 888999887643 5889998875432 222 223344556788889999999984 568999
Q ss_pred EEcCCCCceeEEeeccccceEEEEEcCCCCeEEEEEe-CC-----CcEEEEECCCCeeeeEE-----ecCCCeeEEEEec
Q 003236 624 WDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCD-NN-----SEIRYWSINNGSCAGVF-----KCQSGATQMRFQP 692 (837)
Q Consensus 624 WDl~~~~~~~~~~~~h~~~V~sl~fspdg~~llasgs-~D-----g~I~vwDl~t~~~i~~~-----~~~~~i~sl~~sp 692 (837)
||..+.......-......-.++++.+++. +++.|+ .+ ..+.+||..+.+....- .....-....+..
T Consensus 270 yd~~t~~W~~~~~~~~~R~~~s~~~~~dg~-iyv~GG~~~~~~~~~~~e~yd~~t~~W~~~~~~~~~p~~~~~~~~~~~~ 348 (656)
T 1k3i_A 270 YDSSSDSWIPGPDMQVARGYQSSATMSDGR-VFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLYRS 348 (656)
T ss_dssp EEGGGTEEEECCCCSSCCSSCEEEECTTSC-EEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCTTGGGTT
T ss_pred ecCcCCceeECCCCCccccccceEEecCCe-EEEEeCcccCCcccccceEeCCCCCcceeCCCccccccccccccceeec
Confidence 999876532111111112223455666766 555666 34 57999999887644321 0000000011223
Q ss_pred CCCEEEEEEcC---------CeEEEEECCCCeEEEEEcCCC---------CCEEEEEEcC-CCCEEEEEe-CC-------
Q 003236 693 RLGRILAAAIE---------NYISILDVETQVCRLKLQGHK---------NQVHSVCWNT-SGEYLASVS-DE------- 745 (837)
Q Consensus 693 ~g~~llags~d---------g~I~iwDl~s~~~~~~l~~h~---------~~V~sl~~sp-dg~~Lasgs-Dg------- 745 (837)
++..++.++.+ ..+..||..+.........+. ..-.++.|.. +++++++|+ ++
T Consensus 349 ~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~v~GG~~~~~~~~~~ 428 (656)
T 1k3i_A 349 DNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDAT 428 (656)
T ss_dssp TCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSSSBCC
T ss_pred CCceEEEECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCCCceEeccCCCCeEEEEeCCCCCCCCCcC
Confidence 34444555443 457888988765333222111 1234455543 677777765 32
Q ss_pred ----eEEEEEcCCCCCceeEEEe--ecC-CCceEEEEEeCCCCEEEEEEcC-----------CeEEEEECCCCcEEEecc
Q 003236 746 ----LVRVWSIGSGSKGECIHEL--SCT-GNKFHSCVFHPTFPSLLVIGCY-----------ETLELWNMTENKTLTLSA 807 (837)
Q Consensus 746 ----~I~IwDl~s~~~~~~i~~~--~~~-~~~I~sv~fspdg~~L~sgs~d-----------g~I~IwDl~s~~~~~l~~ 807 (837)
.|.+||..+.. ..... ... .....++++.|+++.+++|+.+ ..+.+||..+.+...+..
T Consensus 429 ~~~~~v~~yd~~~~~---W~~~~~~~mp~~R~~~~~~~l~~g~i~v~GG~~~~~~~~~~~~~~~v~~ydp~t~~W~~~~~ 505 (656)
T 1k3i_A 429 TNAHIITLGEPGTSP---NTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQDTFYKQNP 505 (656)
T ss_dssp CCEEEEECCSTTSCC---EEEECTTCCSSCCBSCEEEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEEGGGTEEEECCC
T ss_pred CcceEEEcCCCCCCC---eeEEccCCCCCCcccCCeEECCCCCEEEECCcccCcCcCCCCcccceEEEcCCCCceeecCC
Confidence 57778776652 22211 111 2223455777899988888864 468999998877654322
Q ss_pred ---CCCCeeEEEEeCCCCEEEEEEC
Q 003236 808 ---HDKLVSSLAASTVNGMVASASH 829 (837)
Q Consensus 808 ---h~~~V~sla~spdg~~LaSgs~ 829 (837)
......+..+.+++++++.|+.
T Consensus 506 ~~~~R~~hs~a~ll~dg~v~v~GG~ 530 (656)
T 1k3i_A 506 NSIVRVYHSISLLLPDGRVFNGGGG 530 (656)
T ss_dssp CSSCCCTTEEEEECTTSCEEEEECC
T ss_pred CCCccccccHhhcCCCcEEEecCCC
Confidence 1222334556789999999985
|
| >2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A* | Back alignment and structure |
|---|
Probab=98.73 E-value=1.8e-06 Score=101.29 Aligned_cols=255 Identities=9% Similarity=0.017 Sum_probs=155.4
Q ss_pred CCEEEEEECCCcEEEEeCCCCeEEEEeccCC----CCeEE-EEEcCCCCEEEEEeC------CCeEEEEEcCCCCceeEE
Q 003236 567 GKLLATGGHDKKAVLWCTESFTVKSTLEEHT----QWITD-VRFSPSLSRLATSSA------DRTVRVWDTENPDYSLRT 635 (837)
Q Consensus 567 g~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~----~~I~~-l~fspdg~~Latgs~------Dg~I~IWDl~~~~~~~~~ 635 (837)
+..|++++.|+.|..+|..+++.+..+.... ..+.+ .... ++ .+++++. ++.|+.+|..+++..-+.
T Consensus 115 ~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v~-~g-~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~ 192 (571)
T 2ad6_A 115 AGQIVKKQANGHLLALDAKTGKINWEVEVCDPKVGSTLTQAPFVA-KD-TVLMGCSGAELGVRGAVNAFDLKTGELKWRA 192 (571)
T ss_dssp TTEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEE-TT-EEEEECBCGGGTCCCEEEEEETTTCCEEEEE
T ss_pred CCEEEEEeCCCEEEEEECCCCCEEEEecCCCCCccceeccCCEEE-CC-EEEEEecCCccCCCCEEEEEECCCCcEEEEE
Confidence 5578888889999999999999887654221 01211 1111 33 5555554 799999999998753332
Q ss_pred eecccc-------------------------------------ceEEEEEcCCCCeEEEEEeC-----------C----C
Q 003236 636 FTGHST-------------------------------------TVMSLDFHPSKEDLLCSCDN-----------N----S 663 (837)
Q Consensus 636 ~~~h~~-------------------------------------~V~sl~fspdg~~llasgs~-----------D----g 663 (837)
...... ....+++.++...+++..+. | +
T Consensus 193 ~~~~~~~~~~~~p~~~~~~~~~G~~~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~ 272 (571)
T 2ad6_A 193 FATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTM 272 (571)
T ss_dssp ESSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTT
T ss_pred ccCCCccccccCcccccccccccccccccccCcccceecCCCCeeeeEEEcCCCCeEEEECCCCccccCCccCCCceeEE
Confidence 221100 00235666665545443321 1 3
Q ss_pred cEEEEECCCCeeeeEEecCC-------Ce---eEEEEecCCC---EEEEEEcCCeEEEEECCCCeEEEEEcCCC------
Q 003236 664 EIRYWSINNGSCAGVFKCQS-------GA---TQMRFQPRLG---RILAAAIENYISILDVETQVCRLKLQGHK------ 724 (837)
Q Consensus 664 ~I~vwDl~t~~~i~~~~~~~-------~i---~sl~~sp~g~---~llags~dg~I~iwDl~s~~~~~~l~~h~------ 724 (837)
.|..+|.++++.+..+.... .+ .-+....+++ .+++++.+|.++++|.++++.+..+....
T Consensus 273 ~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~l~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~~w~~~~~~~~~w~~ 352 (571)
T 2ad6_A 273 TIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDPAVNVFK 352 (571)
T ss_dssp EEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEE
T ss_pred EEEEEecCCCcEEEEecCCCCcccccccCCCCEEEecccCCcEEEEEEEeCCCcEEEEEECCCCCEEeeecccCCccccc
Confidence 69999999999998887421 11 1122224563 46677788999999999998887764321
Q ss_pred -------CCE--------------------------EEEEEcCCCCEEEEEe----------------------------
Q 003236 725 -------NQV--------------------------HSVCWNTSGEYLASVS---------------------------- 743 (837)
Q Consensus 725 -------~~V--------------------------~sl~~spdg~~Lasgs---------------------------- 743 (837)
.++ ..++++|+..+|++..
T Consensus 353 ~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~ 432 (571)
T 2ad6_A 353 KVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAMY 432 (571)
T ss_dssp EECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEE
T ss_pred cccccCCceecccccCCCCCCCceEECCCCccccCCCCceECCCCCEEEEEchhccccccccccccccCCccccccceec
Confidence 111 2357788777766643
Q ss_pred ----------CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE-EeccCCC-C
Q 003236 744 ----------DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDK-L 811 (837)
Q Consensus 744 ----------Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fspdg~~L~sgs~dg~I~IwDl~s~~~~-~l~~h~~-~ 811 (837)
++.|..||+.++ +.+..+... ..+....+...+..+++++.|+.|+.||.++++.+ .+..... .
T Consensus 433 ~~~~~~~~~~~g~l~a~D~~tG---~~~W~~~~~-~~~~~~~~~t~gg~v~~g~~dg~l~a~D~~tG~~lw~~~~~~~~~ 508 (571)
T 2ad6_A 433 PGPNGPTKKEMGQIRAFDLTTG---KAKWTKWEK-FAAWGGTLYTKGGLVWYATLDGYLKALDNKDGKELWNFKMPSGGI 508 (571)
T ss_dssp ECTTSTTSCCCEEEEEECTTTC---CEEEEEEES-SCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCC
T ss_pred cCccccCCCCCCeEEEEECCCC---CEEEEecCC-CCccceeEEECCCEEEEEcCCCeEEEEECCCCCEEEEEeCCCCcE
Confidence 367888998887 444444322 22222333445667888999999999999999988 3332211 1
Q ss_pred eeEEEEeCCCCEEEEE
Q 003236 812 VSSLAASTVNGMVASA 827 (837)
Q Consensus 812 V~sla~spdg~~LaSg 827 (837)
-.-+.+..+|+.++.+
T Consensus 509 ~~p~~~~~~G~~yv~~ 524 (571)
T 2ad6_A 509 GSPMTYSFKGKQYIGS 524 (571)
T ss_dssp SCCEEEEETTEEEEEE
T ss_pred eeeEEEEECCEEEEEE
Confidence 1223455677654433
|
| >3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=98.73 E-value=1.9e-05 Score=86.64 Aligned_cols=238 Identities=9% Similarity=0.007 Sum_probs=154.7
Q ss_pred CCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEeccCCCCeEEEEEcCCCCEEEEE-eCCCeEEEEEcCCCCcee
Q 003236 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATS-SADRTVRVWDTENPDYSL 633 (837)
Q Consensus 555 ~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latg-s~Dg~I~IWDl~~~~~~~ 633 (837)
.+..+|.+..+++ +|+.+. ...|+..++........+.. ...+..++|++....|+.+ ...+.|+.+++..... .
T Consensus 33 ~d~~~C~~~~~~~-~ll~~~-~~~I~~i~~~g~~~~~~~~~-~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~-~ 108 (349)
T 3v64_C 33 PDRRSCKALGPEP-VLLFAN-RIDIRQVLPHRSEYTLLLNN-LENAIALDFHHRRELVFWSDVTLDRILRANLNGSNV-E 108 (349)
T ss_dssp TTSSCEEESSSCC-EEEEEC-BSCEEEECTTSCCEEEEECS-CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-E
T ss_pred CCCCcccccccCc-eeEeec-ccceEEEeCCCCeeEEeecC-CCceEEEEEeccccEEEEEeccCCceEEEecCCCCc-e
Confidence 3445666666644 454443 35688888877655555543 3458899999866665555 4578899999886543 2
Q ss_pred EEeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeeEEec-CCCeeEEEEecCCCEEEEEEcC--CeEEEEE
Q 003236 634 RTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAIE--NYISILD 710 (837)
Q Consensus 634 ~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~-~~~i~sl~~sp~g~~llags~d--g~I~iwD 710 (837)
............+++.+.+..++++-...+.|.++++........+.. ......+++.|.++.++.+... +.|..++
T Consensus 109 ~~~~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~ 188 (349)
T 3v64_C 109 EVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASS 188 (349)
T ss_dssp EEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEE
T ss_pred EEEeCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceEEEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEe
Confidence 222223345678999987777887777788999999875443333322 3457899999988887777653 6899998
Q ss_pred CCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEe--CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEc
Q 003236 711 VETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS--DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGC 788 (837)
Q Consensus 711 l~s~~~~~~l~~h~~~V~sl~~spdg~~Lasgs--Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fspdg~~L~sgs~ 788 (837)
+........+...-.....|+|++++..|+.+. .+.|..+|+..... ...+.........+++. + ..|+.+..
T Consensus 189 ~dG~~~~~~~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~~~---~~~~~~~~~~P~giav~-~-~~ly~td~ 263 (349)
T 3v64_C 189 MDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHR---KAVISQGLPHPFAITVF-E-DSLYWTDW 263 (349)
T ss_dssp TTSCSCEESCCSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC---EEEECSSCSSEEEEEEE-T-TEEEEEET
T ss_pred CCCCCcEEEEECCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCCce---EEEEeCCCCCceEEEEE-C-CEEEEecC
Confidence 875433322223345678999999877777766 67899999875421 11222234456777773 3 35555554
Q ss_pred -CCeEEEEECCCCc
Q 003236 789 -YETLELWNMTENK 801 (837)
Q Consensus 789 -dg~I~IwDl~s~~ 801 (837)
.+.|..+|..+++
T Consensus 264 ~~~~V~~~~~~~G~ 277 (349)
T 3v64_C 264 HTKSINSANKFTGK 277 (349)
T ss_dssp TTTEEEEEETTTCC
T ss_pred CCCeEEEEEccCCC
Confidence 5688888865554
|
| >3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A | Back alignment and structure |
|---|
Probab=98.72 E-value=1.6e-06 Score=90.41 Aligned_cols=179 Identities=8% Similarity=0.026 Sum_probs=126.8
Q ss_pred cceEEEEEcCCCCeEEEEEeCCC--cEEEEECCCCeeeeEEecCCCeeEEEEecCCCEEEEEEc-CCeEEEEECCCCeEE
Q 003236 641 TTVMSLDFHPSKEDLLCSCDNNS--EIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAI-ENYISILDVETQVCR 717 (837)
Q Consensus 641 ~~V~sl~fspdg~~llasgs~Dg--~I~vwDl~t~~~i~~~~~~~~i~sl~~sp~g~~llags~-dg~I~iwDl~s~~~~ 717 (837)
.....|.|+ + ..++.+++.+| .|+++|+.+++.+..+..........+.++++.|+.... ++.+.+||..+.+.+
T Consensus 43 ~ftqGL~~~-~-~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~~FgeGit~~g~~ly~ltw~~~~v~v~D~~t~~~~ 120 (262)
T 3nol_A 43 AFTEGFFYR-N-GYFYESTGLNGRSSIRKVDIESGKTLQQIELGKRYFGEGISDWKDKIVGLTWKNGLGFVWNIRNLRQV 120 (262)
T ss_dssp CEEEEEEEE-T-TEEEEEEEETTEEEEEEECTTTCCEEEEEECCTTCCEEEEEEETTEEEEEESSSSEEEEEETTTCCEE
T ss_pred cccceEEEE-C-CEEEEECCCCCCceEEEEECCCCcEEEEEecCCccceeEEEEeCCEEEEEEeeCCEEEEEECccCcEE
Confidence 345788998 5 46777777766 899999999999999988776655545555677777765 789999999999999
Q ss_pred EEEcCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecC--C---CceEEEEEeCCCCEEEEEE-cCC
Q 003236 718 LKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCT--G---NKFHSCVFHPTFPSLLVIG-CYE 790 (837)
Q Consensus 718 ~~l~~h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~--~---~~I~sv~fspdg~~L~sgs-~dg 790 (837)
.++..... -..++ +|+..|+.+. ++.|.++|..+.. .+..+... + ..++.+.|. +|. |++.. .++
T Consensus 121 ~ti~~~~e-G~glt--~dg~~L~~SdGs~~i~~iDp~T~~---v~~~I~V~~~g~~~~~lNELe~~-~G~-lyan~w~~~ 192 (262)
T 3nol_A 121 RSFNYDGE-GWGLT--HNDQYLIMSDGTPVLRFLDPESLT---PVRTITVTAHGEELPELNELEWV-DGE-IFANVWQTN 192 (262)
T ss_dssp EEEECSSC-CCCEE--ECSSCEEECCSSSEEEEECTTTCS---EEEEEECEETTEECCCEEEEEEE-TTE-EEEEETTSS
T ss_pred EEEECCCC-ceEEe--cCCCEEEEECCCCeEEEEcCCCCe---EEEEEEeccCCccccccceeEEE-CCE-EEEEEccCC
Confidence 88874322 12333 5677666655 7789999998874 44443321 2 334556776 664 55555 467
Q ss_pred eEEEEECCCCcEEEeccC-------------CCCeeEEEEeCCCCEEEEEEC
Q 003236 791 TLELWNMTENKTLTLSAH-------------DKLVSSLAASTVNGMVASASH 829 (837)
Q Consensus 791 ~I~IwDl~s~~~~~l~~h-------------~~~V~sla~spdg~~LaSgs~ 829 (837)
.|.+.|..+++++....- ....+.|||+|+++.|+..+.
T Consensus 193 ~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK 244 (262)
T 3nol_A 193 KIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGK 244 (262)
T ss_dssp EEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEET
T ss_pred eEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECC
Confidence 999999999998732211 235789999999887776664
|
| >1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1 | Back alignment and structure |
|---|
Probab=98.72 E-value=6.2e-06 Score=96.90 Aligned_cols=263 Identities=10% Similarity=0.028 Sum_probs=160.4
Q ss_pred CEEEEEECCCcEEEEeCCCCeEEEEeccCCCCe---------EEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeEEeec
Q 003236 568 KLLATGGHDKKAVLWCTESFTVKSTLEEHTQWI---------TDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTG 638 (837)
Q Consensus 568 ~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~I---------~~l~fspdg~~Latgs~Dg~I~IWDl~~~~~~~~~~~~ 638 (837)
..|++++.++.|+.+|..+++.+-.+....... ..+++ .+..|++++.|+.|..+|..+++.....-..
T Consensus 69 g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~g~a~--~~~~v~~~t~dg~l~AlD~~TG~~~W~~~~~ 146 (582)
T 1flg_A 69 GVIYVTASYSRLFALDAKTGKRLWTYNHRLPDDIRPCCDVVNRGAAI--YGDKVFFGTLDASVVALNKNTGKVVWKKKFA 146 (582)
T ss_dssp TEEEEEETTTEEEEEESSSCCEEEEEECCCCTTCCCSSCSCCCCCEE--ETTEEEEEETTTEEEEEESSSCCEEEEEECS
T ss_pred CEEEEEcCCCCEEEEECCCCcEEEEEcCCCCcccccccccCCCccEE--ECCEEEEEeCCCEEEEEECCCCCEEeeecCC
Confidence 355555654459999999999987765332210 11222 3557888889999999999998864332221
Q ss_pred c-c--cceE-E-EEEcC--CCCeEEEEEe------CCCcEEEEECCCCeeeeEEecCCC---------------------
Q 003236 639 H-S--TTVM-S-LDFHP--SKEDLLCSCD------NNSEIRYWSINNGSCAGVFKCQSG--------------------- 684 (837)
Q Consensus 639 h-~--~~V~-s-l~fsp--dg~~llasgs------~Dg~I~vwDl~t~~~i~~~~~~~~--------------------- 684 (837)
. . ..+. . +.... ++..+++.+. .++.|+.+|.++|+.+........
T Consensus 147 ~~~~~~~~~~sP~v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG~~~W~~~~~~~~~~p~~~~~~~~~g~~g~~~w 226 (582)
T 1flg_A 147 DHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEEIWMRPFVEGHMGRLNGKDSTVTGDVKAPSW 226 (582)
T ss_dssp CGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCEEEEEESSTTCEEEETTEEEEESSCTTCTTS
T ss_pred CCCcCcccccCCEEeCCCcCCcEEEEEeccccccCCCCEEEEEECCCCCEEeecCCCccccccccCcccccccccccccC
Confidence 1 1 0111 1 11111 1222444543 378999999999998886653210
Q ss_pred ---------------------eeEEEEecCCCEEEEEEc--------------------C----CeEEEEECCCCeEEEE
Q 003236 685 ---------------------ATQMRFQPRLGRILAAAI--------------------E----NYISILDVETQVCRLK 719 (837)
Q Consensus 685 ---------------------i~sl~~sp~g~~llags~--------------------d----g~I~iwDl~s~~~~~~ 719 (837)
-..+++.++.+.++++.. | +.|..+|.++++.+..
T Consensus 227 ~~~~~~~~g~~~~~~~gGg~~w~~~a~d~~~g~vyv~~gn~~~~~~~~r~~~gg~~~~~d~~~~~~v~AlD~~TG~~~W~ 306 (582)
T 1flg_A 227 PDDRNSPTGKVESWSHGGGAPWQSASFDAETNTIIVGAGNPGPWNTWARTAKGGNPHDYDSLYTSGQVGVDPSSGEVKWF 306 (582)
T ss_dssp CBCTTSTTSBCGGGGGCBCCCCSCCEEETTTTEEEEEECCBSSSCGGGGSCTTSCSTTCCCTTCSEEEEECTTTCCEEEE
T ss_pred CCccccccccccccccCCccccCCceEcCCCCEEEEeCCCCCcccCcccccCCCcccccCCcccceEEEEeCCCCCEEEE
Confidence 013566777788887774 2 5899999999999988
Q ss_pred EcC--CC--------CCEEEEEEc-CCCC---EEEEEe-CCeEEEEEcCCCCCceeEEEeecCC-------------Cc-
Q 003236 720 LQG--HK--------NQVHSVCWN-TSGE---YLASVS-DELVRVWSIGSGSKGECIHELSCTG-------------NK- 770 (837)
Q Consensus 720 l~~--h~--------~~V~sl~~s-pdg~---~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~-------------~~- 770 (837)
+.. |. .++. +... .+|+ +++.++ +|.|+++|..+++ .+..+.... .+
T Consensus 307 ~q~~~~d~wd~~~~~~p~l-~~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~---~lw~~~~~~~~~~~~~~~~~~g~p~ 382 (582)
T 1flg_A 307 YQHTPNDAWDFSGNNELVL-FDYKAKDGKIVKATAHADRNGFFYVVDRSNGK---LQNAFPFVDNITWASHIDLKTGRPV 382 (582)
T ss_dssp EESSTTCCSCCCCCCCCEE-EEEECSSSCEEEEEEEECTTSEEEEEETTTCC---EEEEEESSSCCCSEEEECTTTCCEE
T ss_pred EeCCCCCcccccCCCCcEE-EeeecCCCCEEEEEEEECCCceEEEEECCCCC---EecccccccCccccccccccCCCEe
Confidence 753 32 1221 2222 4674 677777 9999999999884 333322211 00
Q ss_pred -------------------------------eEEEEEeCCCCEEEEEE--------------------------------
Q 003236 771 -------------------------------FHSCVFHPTFPSLLVIG-------------------------------- 787 (837)
Q Consensus 771 -------------------------------I~sv~fspdg~~L~sgs-------------------------------- 787 (837)
...++++|+...+++..
T Consensus 383 ~~~~~~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~p~~~ 462 (582)
T 1flg_A 383 EREGQRPPLPEPGQKHGKAVEVSPPFLGGKNWNPMAYSQDTGLFYVPANHWKEDYWTEEVSYTKGSAYLGMGFRIKRMYD 462 (582)
T ss_dssp ECTTCSCCCCCTTCSSCCCEEESSCTTCSSCSSCCEECTTTCCEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEESCS
T ss_pred EccccCCccccccccCCCceEECcCCccccCCCCceECCCCCEEEEechhcceeeecccccccCCCceeccceeecCCCC
Confidence 01346677666665543
Q ss_pred -cCCeEEEEECCCCcEE-EeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 003236 788 -CYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 837 (837)
Q Consensus 788 -~dg~I~IwDl~s~~~~-~l~~h~~~V~sla~spdg~~LaSgs~DG~I~IWd 837 (837)
.++.|..||+.+++.+ ... +..++..-.....+.+++.++.||.|+.||
T Consensus 463 ~~~G~l~A~D~~tG~~~W~~~-~~~~~~~g~~~tagglvf~g~~dg~l~A~D 513 (582)
T 1flg_A 463 DHVGSLRAMDPVSGKVVWEHK-EHLPLWAGVLATAGNLVFTGTGDGYFKAFD 513 (582)
T ss_dssp SCSEEEEEECTTTCCEEEEEE-ESSCCCSCCEEETTTEEEEECTTSEEEEEE
T ss_pred CCcceEEEEECCCCCEEEEec-CCCCCcccceEeCCCEEEEECCCCcEEEEE
Confidence 2578999999999987 332 222332222223467888899999999886
|
| >3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=98.69 E-value=1.5e-05 Score=96.89 Aligned_cols=269 Identities=8% Similarity=0.026 Sum_probs=173.5
Q ss_pred CCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEec-------cCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCC
Q 003236 556 SKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLE-------EHTQWITDVRFSPSLSRLATSSADRTVRVWDTEN 628 (837)
Q Consensus 556 ~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~-------~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~ 628 (837)
..|.++...++|.+.+ |+.+ -|.+||..+.+...... .....|.++...+++. |..|+..+-|.++|..+
T Consensus 211 ~~i~~i~~d~~g~lwi-gt~~-Gl~~~d~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~-lWigt~~~Gl~~~~~~~ 287 (781)
T 3v9f_A 211 NDVRCIYKDTNGNIWI-GTSK-GLALFNANTETFTNFHNNPGNIHGALSSYIFSIKQLKDNK-LWIATELNGIMILDLQQ 287 (781)
T ss_dssp SSEEEEEECTTCCEEE-EETT-EEEEEETTTTEEEC-----------CCCCEEEEEECTTSE-EEEEESSSCEEEEETTC
T ss_pred CceeEEEEcCCCCEEE-EeCC-cHheECCCCCcEEEEEcCCCccccccCceEEEEEECCCCC-EEEEeCCCCeEEECCCC
Confidence 5699999998887655 4444 68999987765543221 1245699999888775 55566645688899876
Q ss_pred CCceeEEe-------------eccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeeEEe----------cCCCe
Q 003236 629 PDYSLRTF-------------TGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK----------CQSGA 685 (837)
Q Consensus 629 ~~~~~~~~-------------~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~----------~~~~i 685 (837)
........ .-....|.++....++. +..|..++-|..|+..+........ ....|
T Consensus 288 ~~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D~~g~--lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v 365 (781)
T 3v9f_A 288 NQFLLPEQIRFEFIREGDNNYSLSNASARYIFQDSFNN--IWIGTWGGGINFISNAPPTFHTWSYSPTQMNESSLSNKVV 365 (781)
T ss_dssp C---------CEEECBCSSTTSBSSSCEEEEEECSSCC--EEEEEBSSCEEEECSSCCSCEEEC----CCCSSCCSSSCE
T ss_pred CeeeeeeccccccccCCCCCCCCCCCeEEEEEEeCCCC--EEEEecCCeEEEeCCCCCcceeeccCccccccCCCCCcce
Confidence 54311111 11345789999988875 3456667779999987655433211 12457
Q ss_pred eEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEE---cCCCCCEEEEEEcCCCCEEEEEeCCeEEEEEcCCCCCceeEE
Q 003236 686 TQMRFQPRLGRILAAAIENYISILDVETQVCRLKL---QGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIH 762 (837)
Q Consensus 686 ~sl~~sp~g~~llags~dg~I~iwDl~s~~~~~~l---~~h~~~V~sl~~spdg~~LasgsDg~I~IwDl~s~~~~~~i~ 762 (837)
.++...+++ .|.+|+.++.|.+||..++...... ......|.+++.++++.+.+...++.|.+||..++ . +.
T Consensus 366 ~~i~~d~~g-~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lWigt~~~Gl~~~~~~~~---~-~~ 440 (781)
T 3v9f_A 366 SSVCDDGQG-KLWIGTDGGGINVFENGKRVAIYNKENRELLSNSVLCSLKDSEGNLWFGTYLGNISYYNTRLK---K-FQ 440 (781)
T ss_dssp EEEEECTTS-CEEEEEBSSCEEEEETTEEEEECC-----CCCSBEEEEEECTTSCEEEEETTEEEEEECSSSC---E-EE
T ss_pred EEEEEcCCC-CEEEEeCCCcEEEEECCCCeEEEccCCCCCCCcceEEEEECCCCCEEEEeccCCEEEEcCCCC---c-EE
Confidence 888877765 4667777778999998765432211 12346799999988888777554677999988765 2 22
Q ss_pred Eee---cCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEEEecc-C-----CCCeeEEEEeCCCCEEEEEECCCcE
Q 003236 763 ELS---CTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSA-H-----DKLVSSLAASTVNGMVASASHDKCV 833 (837)
Q Consensus 763 ~~~---~~~~~I~sv~fspdg~~L~sgs~dg~I~IwDl~s~~~~~l~~-h-----~~~V~sla~spdg~~LaSgs~DG~I 833 (837)
.+. .....|.++...+++. |.+++. +.|.+||..+++...+.. . ...|.++...++|.+.+....+| |
T Consensus 441 ~~~~~~~~~~~v~~i~~d~~g~-lwigt~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~~~G-l 517 (781)
T 3v9f_A 441 IIELEKNELLDVRVFYEDKNKK-IWIGTH-AGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDSEGRFWIGTFGGG-V 517 (781)
T ss_dssp ECCSTTTCCCCEEEEEECTTSE-EEEEET-TEEEEEESSSSSCCEEECTTTSSCSCSCEEEEEECTTCCEEEEESSSC-E
T ss_pred EeccCCCCCCeEEEEEECCCCC-EEEEEC-CceEEEeCCCCeEEecccCcccccccceeEEEEEcCCCCEEEEEcCCC-E
Confidence 222 2346788888888776 666666 669999988876553322 1 36799999998888766543345 4
Q ss_pred EEeC
Q 003236 834 KIWK 837 (837)
Q Consensus 834 ~IWd 837 (837)
..||
T Consensus 518 ~~~~ 521 (781)
T 3v9f_A 518 GIYT 521 (781)
T ss_dssp EEEC
T ss_pred EEEe
Confidence 4443
|
| >3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=98.69 E-value=2.5e-06 Score=88.93 Aligned_cols=191 Identities=9% Similarity=0.046 Sum_probs=134.9
Q ss_pred eEEEEeccCC--CCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeEEeeccccceEEEEEcCCCCeEEEEEeCCCcE
Q 003236 588 TVKSTLEEHT--QWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEI 665 (837)
Q Consensus 588 ~~~~~l~~h~--~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I 665 (837)
+.+.++. |. .....+.|+ ++.++++.+.+|.|+++|+.+++..... ......-..+++. ++.+++..-.++.+
T Consensus 44 ~Vv~~~p-hd~~~ftqGL~~~-~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~~~~FgeGit~~--g~~Ly~ltw~~~~v 118 (268)
T 3nok_A 44 HIIREYP-HATNAFTQGLVFH-QGHFFESTGHQGTLRQLSLESAQPVWME-RLGNIFAEGLASD--GERLYQLTWTEGLL 118 (268)
T ss_dssp EEEEEEE-CCTTCCEEEEEEE-TTEEEEEETTTTEEEECCSSCSSCSEEE-ECTTCCEEEEEEC--SSCEEEEESSSCEE
T ss_pred EEEEEEc-CCCccccceEEEE-CCEEEEEcCCCCEEEEEECCCCcEEeEE-CCCCcceeEEEEe--CCEEEEEEccCCEE
Confidence 3444552 43 345688887 4566677778889999999998864444 3222222335554 56677777789999
Q ss_pred EEEECCCCeeeeEEecCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEcCCC-----CCEEEEEEcCCCCEEE
Q 003236 666 RYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHK-----NQVHSVCWNTSGEYLA 740 (837)
Q Consensus 666 ~vwDl~t~~~i~~~~~~~~i~sl~~sp~g~~llags~dg~I~iwDl~s~~~~~~l~~h~-----~~V~sl~~spdg~~La 740 (837)
.+||..+.+.+..+.....-..++ ++++.|+++..++.|.++|..+.+.+..+.... ..++.+.|. +|++++
T Consensus 119 ~V~D~~Tl~~~~ti~~~~eGwGLt--~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~-dG~lya 195 (268)
T 3nok_A 119 FTWSGMPPQRERTTRYSGEGWGLC--YWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA-NGVIYA 195 (268)
T ss_dssp EEEETTTTEEEEEEECSSCCCCEE--EETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEE
T ss_pred EEEECCcCcEEEEEeCCCceeEEe--cCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe-CCEEEE
Confidence 999999999999998755433444 567888888889999999999998887775422 245677877 776665
Q ss_pred EEe-CCeEEEEEcCCCCCceeEEEeec-------------CCCceEEEEEeCCCCEEEEEEcC
Q 003236 741 SVS-DELVRVWSIGSGSKGECIHELSC-------------TGNKFHSCVFHPTFPSLLVIGCY 789 (837)
Q Consensus 741 sgs-Dg~I~IwDl~s~~~~~~i~~~~~-------------~~~~I~sv~fspdg~~L~sgs~d 789 (837)
... ++.|.+.|..++ +.+..+.. .....+.|+|+|+++.|++.+..
T Consensus 196 nvw~s~~I~vIDp~TG---~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTGK~ 255 (268)
T 3nok_A 196 NIWHSSDVLEIDPATG---TVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTGKL 255 (268)
T ss_dssp EETTCSEEEEECTTTC---BEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEETT
T ss_pred EECCCCeEEEEeCCCC---cEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeCCC
Confidence 554 789999999998 44444332 12467899999988877777653
|
| >3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=98.64 E-value=2.1e-05 Score=87.42 Aligned_cols=237 Identities=9% Similarity=-0.011 Sum_probs=154.0
Q ss_pred eEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEeccCCCCeEEEEEcCCCCEEEEE-eCCCeEEEEEcCCCCceeEEe
Q 003236 558 VESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATS-SADRTVRVWDTENPDYSLRTF 636 (837)
Q Consensus 558 V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latg-s~Dg~I~IWDl~~~~~~~~~~ 636 (837)
.+|.+..+++ +|+.+. ...|+.+++........+.. ...+..++|++.+..|+.+ ...+.|+.+++..... ...+
T Consensus 79 ~~C~~~~~~~-~l~~~~-~~~I~~i~~~~~~~~~~~~~-~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~-~~~~ 154 (386)
T 3v65_B 79 RSCKALGPEP-VLLFAN-RIDIRQVLPHRSEYTLLLNN-LENAIALDFHHRRELVFWSDVTLDRILRANLNGSNV-EEVV 154 (386)
T ss_dssp SCEEECSSCC-EEEEEC-BSCEEEECTTSCCCEEEECS-CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCE-EEEE
T ss_pred CeECCccccc-eeEeec-CccceeeccCCCcEEEEecC-CCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCc-EEEE
Confidence 4455555533 554443 46788888877655544443 3458899999865555544 4578899999886542 2222
Q ss_pred eccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeeEEec-CCCeeEEEEecCCCEEEEEEcC--CeEEEEECCC
Q 003236 637 TGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAIE--NYISILDVET 713 (837)
Q Consensus 637 ~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~-~~~i~sl~~sp~g~~llags~d--g~I~iwDl~s 713 (837)
.........+++++.+..++++-...+.|.++++........+.. ......+++.|.++.|+.+... +.|..+++..
T Consensus 155 ~~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG 234 (386)
T 3v65_B 155 STGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDG 234 (386)
T ss_dssp CSSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSCEEEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTS
T ss_pred eCCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceEEeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCC
Confidence 323345678899887777887777778899999875443333332 2457899999988888777653 6899999875
Q ss_pred CeEEEEEcCCCCCEEEEEEcCCCCEEEEEe--CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEE-cCC
Q 003236 714 QVCRLKLQGHKNQVHSVCWNTSGEYLASVS--DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIG-CYE 790 (837)
Q Consensus 714 ~~~~~~l~~h~~~V~sl~~spdg~~Lasgs--Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fspdg~~L~sgs-~dg 790 (837)
......+...-.....|+|++++..|+.+. .+.|..+|+.... ....+.........+++. .+ .|+.+. ..+
T Consensus 235 ~~~~~~~~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~~---~~~~~~~~~~~P~giav~-~~-~ly~td~~~~ 309 (386)
T 3v65_B 235 SGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSH---RKAVISQGLPHPFAITVF-ED-SLYWTDWHTK 309 (386)
T ss_dssp CSCEEEECSSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSCS---CEEEECSSCSSEEEEEEE-TT-EEEEEETTTT
T ss_pred CCcEEEEECCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCCe---eEEEEECCCCCceEEEEE-CC-EEEEeeCCCC
Confidence 543333333445688999998877777666 6789999986542 122222234456777773 33 455554 456
Q ss_pred eEEEEECCCCcEE
Q 003236 791 TLELWNMTENKTL 803 (837)
Q Consensus 791 ~I~IwDl~s~~~~ 803 (837)
.|..+|..+++..
T Consensus 310 ~V~~~~~~~G~~~ 322 (386)
T 3v65_B 310 SINSANKFTGKNQ 322 (386)
T ss_dssp EEEEEETTTCCSC
T ss_pred eEEEEECCCCcce
Confidence 8998986555543
|
| >3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.64 E-value=7.5e-06 Score=84.56 Aligned_cols=191 Identities=15% Similarity=0.130 Sum_probs=133.7
Q ss_pred eEEEEeccCC--CCeEEEEEcCCCCEEEEEeCC--CeEEEEEcCCCCceeEEeecc-ccceEEEEEcCCCCeEEEEEeCC
Q 003236 588 TVKSTLEEHT--QWITDVRFSPSLSRLATSSAD--RTVRVWDTENPDYSLRTFTGH-STTVMSLDFHPSKEDLLCSCDNN 662 (837)
Q Consensus 588 ~~~~~l~~h~--~~I~~l~fspdg~~Latgs~D--g~I~IWDl~~~~~~~~~~~~h-~~~V~sl~fspdg~~llasgs~D 662 (837)
+.+.++ .|. .....+.|+. +.++.+.+.+ ..|+++|+.+++. +....-. ...-..+++. ++.++...-.+
T Consensus 10 ~v~~~~-phd~~~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv-~~~~~l~~~~fgeGi~~~--~~~ly~ltw~~ 84 (243)
T 3mbr_X 10 RVVKRY-PHDTTAFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRI-LQRAEVPPPYFGAGIVAW--RDRLIQLTWRN 84 (243)
T ss_dssp EEEEEE-ECCTTCCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCE-EEEEECCTTCCEEEEEEE--TTEEEEEESSS
T ss_pred EEEEEc-CCCCccccccEEEEC-CEEEEECCCCCCceEEEEECCCCCE-EEEEeCCCCcceeEEEEe--CCEEEEEEeeC
Confidence 445555 344 4566899986 4555555554 4899999999875 3333322 2122334443 56677777789
Q ss_pred CcEEEEECCCCeeeeEEecCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEcCCC-----CCEEEEEEcCCCC
Q 003236 663 SEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHK-----NQVHSVCWNTSGE 737 (837)
Q Consensus 663 g~I~vwDl~t~~~i~~~~~~~~i~sl~~sp~g~~llags~dg~I~iwDl~s~~~~~~l~~h~-----~~V~sl~~spdg~ 737 (837)
+.+.+||..+.+.+..+.....-..+ .++++.|+++..++.|.++|..+.+.+..+.... ..++.+.|. +|+
T Consensus 85 ~~v~v~D~~tl~~~~ti~~~~~Gwgl--t~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~-~G~ 161 (243)
T 3mbr_X 85 HEGFVYDLATLTPRARFRYPGEGWAL--TSDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWV-NGE 161 (243)
T ss_dssp SEEEEEETTTTEEEEEEECSSCCCEE--EECSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTE
T ss_pred CEEEEEECCcCcEEEEEeCCCCceEE--eeCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEe-CCE
Confidence 99999999999999999875543344 4677888888888999999999988887776422 345667776 676
Q ss_pred EEEEEe-CCeEEEEEcCCCCCceeEEEeec-------------CCCceEEEEEeCCCCEEEEEEcC
Q 003236 738 YLASVS-DELVRVWSIGSGSKGECIHELSC-------------TGNKFHSCVFHPTFPSLLVIGCY 789 (837)
Q Consensus 738 ~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~-------------~~~~I~sv~fspdg~~L~sgs~d 789 (837)
+++... ++.|.+.|..++ +.+..+.. .....+.++++|+++.|++.+..
T Consensus 162 lyanvw~s~~I~vIDp~tG---~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK~ 224 (243)
T 3mbr_X 162 LLANVWLTSRIARIDPASG---KVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGKR 224 (243)
T ss_dssp EEEEETTTTEEEEECTTTC---BEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEETT
T ss_pred EEEEECCCCeEEEEECCCC---CEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECCC
Confidence 666554 779999999998 45444431 12356899999998888887764
|
| >3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.64 E-value=9.6e-06 Score=83.76 Aligned_cols=182 Identities=10% Similarity=0.070 Sum_probs=127.0
Q ss_pred ccc--cceEEEEEcCCCCeEEEEEeCCC--cEEEEECCCCeeeeEEecCCCeeEEEEecCCCEEEEEEc-CCeEEEEECC
Q 003236 638 GHS--TTVMSLDFHPSKEDLLCSCDNNS--EIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAI-ENYISILDVE 712 (837)
Q Consensus 638 ~h~--~~V~sl~fspdg~~llasgs~Dg--~I~vwDl~t~~~i~~~~~~~~i~sl~~sp~g~~llags~-dg~I~iwDl~ 712 (837)
.|. .....+.|+. ..++.+.+.+| .|+++|+.+++.+..+..........+...++.|+.... ++.+.+||..
T Consensus 16 phd~~~ftqGL~~~~--~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~~~~ly~ltw~~~~v~v~D~~ 93 (243)
T 3mbr_X 16 PHDTTAFTEGLFYLR--GHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAWRDRLIQLTWRNHEGFVYDLA 93 (243)
T ss_dssp ECCTTCCEEEEEEET--TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEEESSSSEEEEEETT
T ss_pred CCCCccccccEEEEC--CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEeCCEEEEEEeeCCEEEEEECC
Confidence 454 4566899986 45777777654 899999999999999988776655555555677776654 7899999999
Q ss_pred CCeEEEEEcCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecC--C---CceEEEEEeCCCCEEEEE
Q 003236 713 TQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCT--G---NKFHSCVFHPTFPSLLVI 786 (837)
Q Consensus 713 s~~~~~~l~~h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~--~---~~I~sv~fspdg~~L~sg 786 (837)
+.+.+.++..... -..++ +++..|+.+. ++.|.++|..+.. .+..+... + ..++.+.+. +|. |++.
T Consensus 94 tl~~~~ti~~~~~-Gwglt--~dg~~L~vSdgs~~l~~iDp~t~~---~~~~I~V~~~g~~~~~lNeLe~~-~G~-lyan 165 (243)
T 3mbr_X 94 TLTPRARFRYPGE-GWALT--SDDSHLYMSDGTAVIRKLDPDTLQ---QVGSIKVTAGGRPLDNLNELEWV-NGE-LLAN 165 (243)
T ss_dssp TTEEEEEEECSSC-CCEEE--ECSSCEEEECSSSEEEEECTTTCC---EEEEEECEETTEECCCEEEEEEE-TTE-EEEE
T ss_pred cCcEEEEEeCCCC-ceEEe--eCCCEEEEECCCCeEEEEeCCCCe---EEEEEEEccCCcccccceeeEEe-CCE-EEEE
Confidence 9999998875332 23444 4566666655 7899999998874 44443321 1 234556665 554 5555
Q ss_pred E-cCCeEEEEECCCCcEEEecc--------------CCCCeeEEEEeCCCCEEEEEEC
Q 003236 787 G-CYETLELWNMTENKTLTLSA--------------HDKLVSSLAASTVNGMVASASH 829 (837)
Q Consensus 787 s-~dg~I~IwDl~s~~~~~l~~--------------h~~~V~sla~spdg~~LaSgs~ 829 (837)
. .++.|.+.|..+++++.... .....+.|+++|+++.|+..+.
T Consensus 166 vw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK 223 (243)
T 3mbr_X 166 VWLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGK 223 (243)
T ss_dssp ETTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEET
T ss_pred ECCCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECC
Confidence 5 46799999999999872211 1246789999998876666553
|
| >1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A* | Back alignment and structure |
|---|
Probab=98.63 E-value=1.2e-05 Score=94.56 Aligned_cols=251 Identities=9% Similarity=-0.018 Sum_probs=151.0
Q ss_pred EEEEECCCcEEEEeCCCCeEEEEeccCC----CCeEE-EEEcCCCCEEEEEe------CCCeEEEEEcCCCCceeEEeec
Q 003236 570 LATGGHDKKAVLWCTESFTVKSTLEEHT----QWITD-VRFSPSLSRLATSS------ADRTVRVWDTENPDYSLRTFTG 638 (837)
Q Consensus 570 Lasgs~Dg~I~VWd~~t~~~~~~l~~h~----~~I~~-l~fspdg~~Latgs------~Dg~I~IWDl~~~~~~~~~~~~ 638 (837)
|++++.|+.|+.+|..+++.+....... ..+.+ ..+. ++ .|++++ .++.|+.+|..+++..-+....
T Consensus 124 V~v~t~dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~ssP~v~-~g-~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~~ 201 (599)
T 1w6s_A 124 ILKTQLDGNVAALNAETGETVWKVENSDIKVGSTLTIAPYVV-KD-KVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYAT 201 (599)
T ss_dssp EEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEE-TT-EEEECCBCGGGTCCCEEEEEETTTCCEEEEEESS
T ss_pred EEEEcCCCEEEEEECCCCCEEEeecCCCCCccceeecCCEEE-CC-EEEEEecccccCCCCeEEEEECCCCcEEEEEcCC
Confidence 7888899999999999999986654221 01221 1111 34 455554 3899999999998753332221
Q ss_pred ccc------------------------------------ce-EEEEEcCCCCeEEEEEeCC----------------CcE
Q 003236 639 HST------------------------------------TV-MSLDFHPSKEDLLCSCDNN----------------SEI 665 (837)
Q Consensus 639 h~~------------------------------------~V-~sl~fspdg~~llasgs~D----------------g~I 665 (837)
... .+ ..+++.+....++ .+..+ +.|
T Consensus 202 ~~~~~~~~~p~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy-~g~g~~~p~~~~~r~gd~~y~~sv 280 (599)
T 1w6s_A 202 GPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIY-FGTGNPAPWNETMRPGDNKWTMTI 280 (599)
T ss_dssp SCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEE-EECCCCSCSCGGGSCSCCTTSSEE
T ss_pred CCccccccccccccccccccccccccccCCCcceecCCCccccceeEeCCCCEEE-EeCCCCccccCcccCCCccccceE
Confidence 110 01 1345666655444 44333 489
Q ss_pred EEEECCCCeeeeEEecCCC----------eeEEEEe-cCC---CEEEEEEcCCeEEEEECCCCeEEEEEcCCC-------
Q 003236 666 RYWSINNGSCAGVFKCQSG----------ATQMRFQ-PRL---GRILAAAIENYISILDVETQVCRLKLQGHK------- 724 (837)
Q Consensus 666 ~vwDl~t~~~i~~~~~~~~----------i~sl~~s-p~g---~~llags~dg~I~iwDl~s~~~~~~l~~h~------- 724 (837)
..+|.++++.+..+..... ..-+... .++ ..++.++.+|.|+++|.++++.+.......
T Consensus 281 ~Ald~~TG~~~W~~q~~~~d~wd~d~~~~p~l~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~ 360 (599)
T 1w6s_A 281 FGRDADTGEAKFGYQKTPHDEWDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSANKLDDTVNVFKS 360 (599)
T ss_dssp EEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEE
T ss_pred EEEeCCCCceeeEeecCCCccccccCCCccEEEeccccCCcEEEEEEEECCCcEEEEEECCCCCEeecccccCCcccccc
Confidence 9999999999988875321 1112222 456 356667889999999999999887664211
Q ss_pred ------CCE--------------------------EEEEEcCCCCEEEEEe-----------------------------
Q 003236 725 ------NQV--------------------------HSVCWNTSGEYLASVS----------------------------- 743 (837)
Q Consensus 725 ------~~V--------------------------~sl~~spdg~~Lasgs----------------------------- 743 (837)
.++ ..++++|+..++++..
T Consensus 361 ~~~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~ 440 (599)
T 1w6s_A 361 VDLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDWEPFMLPYKAGQFFVGATLNMYP 440 (599)
T ss_dssp ECTTTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEE
T ss_pred cccCCCceeeccccCCCCCCCccEeccCcccccCCCCccCCCCCCEEEEeccccceeeecccccccCCcceecccceecc
Confidence 111 1356677666555431
Q ss_pred -----------CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE-EeccCCC-
Q 003236 744 -----------DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDK- 810 (837)
Q Consensus 744 -----------Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fspdg~~L~sgs~dg~I~IwDl~s~~~~-~l~~h~~- 810 (837)
++.|..||+.++ +.+...... .+...-.+...+..+++++.|+.|+.||.++++.+ .+.....
T Consensus 441 ~p~~~~~~~~~~G~l~A~D~~tG---~~~W~~~~~-~~~~~g~~~tagg~vf~gt~dg~l~A~D~~tG~~lW~~~l~~g~ 516 (599)
T 1w6s_A 441 GPKGDRQNYEGLGQIKAYNAITG---DYKWEKMER-FAVWGGTMATAGDLVFYGTLDGYLKARDSDTGDLLWKFKIPSGA 516 (599)
T ss_dssp CTTSBTTTTBCCEEEEEECTTTC---CEEEEEEES-SCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCC
T ss_pred CCcCCcccCCCcCeEEEEECCCC---CEEeEecCC-CCccCcceEecCCEEEEECCCCeEEEEECCCCCEEEEeeCCCCc
Confidence 256777888777 333333221 11211123345667888999999999999999988 3332221
Q ss_pred CeeEEEEeCCCC-EEEEE
Q 003236 811 LVSSLAASTVNG-MVASA 827 (837)
Q Consensus 811 ~V~sla~spdg~-~LaSg 827 (837)
...-+.+..+|+ |+++.
T Consensus 517 ~~~P~~y~~~G~qyv~~~ 534 (599)
T 1w6s_A 517 IGYPMTYTHKGTQYVAIY 534 (599)
T ss_dssp CSCCEEEEETTEEEEEEE
T ss_pred EeccEEEEeCCEEEEEEE
Confidence 122345566776 44443
|
| >3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=98.61 E-value=3.1e-06 Score=88.22 Aligned_cols=177 Identities=7% Similarity=0.018 Sum_probs=124.9
Q ss_pred cceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeeEEecCCCeeEEEEecCCCEEEEEE-cCCeEEEEECCCCeEEEE
Q 003236 641 TTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAA-IENYISILDVETQVCRLK 719 (837)
Q Consensus 641 ~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~~~~i~sl~~sp~g~~llags-~dg~I~iwDl~s~~~~~~ 719 (837)
.....|.|+ ++.++.+.+.+|.|+++|+++++.+..+ .........+.++++.|+... .++.+.+||..+.+.+.+
T Consensus 55 ~ftqGL~~~--~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~~~~FgeGit~~g~~Ly~ltw~~~~v~V~D~~Tl~~~~t 131 (268)
T 3nok_A 55 AFTQGLVFH--QGHFFESTGHQGTLRQLSLESAQPVWME-RLGNIFAEGLASDGERLYQLTWTEGLLFTWSGMPPQRERT 131 (268)
T ss_dssp CCEEEEEEE--TTEEEEEETTTTEEEECCSSCSSCSEEE-ECTTCCEEEEEECSSCEEEEESSSCEEEEEETTTTEEEEE
T ss_pred cccceEEEE--CCEEEEEcCCCCEEEEEECCCCcEEeEE-CCCCcceeEEEEeCCEEEEEEccCCEEEEEECCcCcEEEE
Confidence 345688887 4678888888999999999999999888 666655543444556666655 478999999999999998
Q ss_pred EcCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeec--CC---CceEEEEEeCCCCEEEEEE-cCCeE
Q 003236 720 LQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSC--TG---NKFHSCVFHPTFPSLLVIG-CYETL 792 (837)
Q Consensus 720 l~~h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~--~~---~~I~sv~fspdg~~L~sgs-~dg~I 792 (837)
+.... .-..++ +|+..|+.+. ++.|.++|..+.. .+..+.. .. ..++.+.|. +|. |++.. .++.|
T Consensus 132 i~~~~-eGwGLt--~Dg~~L~vSdGs~~l~~iDp~T~~---v~~~I~V~~~g~~v~~lNeLe~~-dG~-lyanvw~s~~I 203 (268)
T 3nok_A 132 TRYSG-EGWGLC--YWNGKLVRSDGGTMLTFHEPDGFA---LVGAVQVKLRGQPVELINELECA-NGV-IYANIWHSSDV 203 (268)
T ss_dssp EECSS-CCCCEE--EETTEEEEECSSSEEEEECTTTCC---EEEEEECEETTEECCCEEEEEEE-TTE-EEEEETTCSEE
T ss_pred EeCCC-ceeEEe--cCCCEEEEECCCCEEEEEcCCCCe---EEEEEEeCCCCcccccccccEEe-CCE-EEEEECCCCeE
Confidence 87532 223444 5677777776 8899999998874 4443332 22 234667777 664 66555 46799
Q ss_pred EEEECCCCcEEEecc--------------CCCCeeEEEEeCCCCEEEEEE
Q 003236 793 ELWNMTENKTLTLSA--------------HDKLVSSLAASTVNGMVASAS 828 (837)
Q Consensus 793 ~IwDl~s~~~~~l~~--------------h~~~V~sla~spdg~~LaSgs 828 (837)
.+.|..+++++.... -....+.|||+|+++.|+..+
T Consensus 204 ~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTG 253 (268)
T 3nok_A 204 LEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTG 253 (268)
T ss_dssp EEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEE
T ss_pred EEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeC
Confidence 999999999872211 124679999999876555544
|
| >3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=98.59 E-value=9.3e-06 Score=91.72 Aligned_cols=233 Identities=9% Similarity=0.069 Sum_probs=141.2
Q ss_pred CeEEEEEcC-CCCEEEEEeCCCeEEEEEcCCCCceeEEeeccccceEEEEEcCCCCeEEEEEeCCC----cEEEEECCCC
Q 003236 599 WITDVRFSP-SLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNS----EIRYWSINNG 673 (837)
Q Consensus 599 ~I~~l~fsp-dg~~Latgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg----~I~vwDl~t~ 673 (837)
....|+|+| ++..|+++...+.|+.+|+.... +..+.........|+|+++++.++++...++ .+.+++.. +
T Consensus 138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~--v~~~~~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~~-g 214 (430)
T 3tc9_A 138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEY--VSTVYSGLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTRE-S 214 (430)
T ss_dssp CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTE--EEEEECCCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEGG-G
T ss_pred CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCE--EEEEecCCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeCC-C
Confidence 467899998 45667776666889999998644 3344445566889999999886776665333 23434432 3
Q ss_pred eee--eEEecCCCeeEEEEecCCCEEEEEE-cCCeEEEEECCCCeEEEEEc-CCCCCEEEEEEcCCCCEEEEEe--CCeE
Q 003236 674 SCA--GVFKCQSGATQMRFQPRLGRILAAA-IENYISILDVETQVCRLKLQ-GHKNQVHSVCWNTSGEYLASVS--DELV 747 (837)
Q Consensus 674 ~~i--~~~~~~~~i~sl~~sp~g~~llags-~dg~I~iwDl~s~~~~~~l~-~h~~~V~sl~~spdg~~Lasgs--Dg~I 747 (837)
... ..+........++++|+++.|+++. ..+.|..||...+....... ........|+|+|++++|+.+. .+.|
T Consensus 215 ~~~~~~~l~~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d~~~~~I 294 (430)
T 3tc9_A 215 GFKVITELTKGQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAYIVVVNQHYI 294 (430)
T ss_dssp TSCSEEEEEECSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEE
T ss_pred ceeeeeeeccCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEEEEEECCCCEE
Confidence 222 2333345567888999555555555 56899999998776522222 2234578999999999666665 6789
Q ss_pred EEEEcCCCCC-ceeEEEeecC---------------CCceE-EEEEe--------CCCCEEEEEE-cCCeEEEEECCCCc
Q 003236 748 RVWSIGSGSK-GECIHELSCT---------------GNKFH-SCVFH--------PTFPSLLVIG-CYETLELWNMTENK 801 (837)
Q Consensus 748 ~IwDl~s~~~-~~~i~~~~~~---------------~~~I~-sv~fs--------pdg~~L~sgs-~dg~I~IwDl~s~~ 801 (837)
.+++...... ...+..+... -.... .+++. +++. |+++. ..+.|+.++ .++.
T Consensus 295 ~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D~~g~-lyvaD~~n~~I~~i~-~~G~ 372 (430)
T 3tc9_A 295 LRSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSDEYD-FYFCDRENHCIRILT-PQGR 372 (430)
T ss_dssp EEEEEETTTTEECCCEEEEECTTCBCCBCEEGGGCBBSSEEEEEEEECGGGTTSSCCEE-EEEEEGGGTEEEEEC-TTSE
T ss_pred EEEeCCcccccccceEEEeccCCCCCCCCCCCcceEeCCCcceEEEccccccccCCCCe-EEEEECCCcEEEEEC-CCCc
Confidence 9988764210 0011111111 01122 45554 2344 55554 456899998 4566
Q ss_pred EEEeccC------------------CCCeeEEEEeCC-CCEEEEEECCCcEEEe
Q 003236 802 TLTLSAH------------------DKLVSSLAASTV-NGMVASASHDKCVKIW 836 (837)
Q Consensus 802 ~~~l~~h------------------~~~V~sla~spd-g~~LaSgs~DG~I~IW 836 (837)
...+.+. -.....|+++++ +.++++-.....|+.+
T Consensus 373 v~~~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i 426 (430)
T 3tc9_A 373 VTTFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEERECFFIGDRENRRIRKI 426 (430)
T ss_dssp EEEEEECCTTSSSSCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEE
T ss_pred EEEEEeCCCCCCCcccCCCchhhcEeCCCcEEEEECCCCEEEEEECCCCeEEEE
Confidence 5544322 125789999995 5555554455667654
|
| >1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1 | Back alignment and structure |
|---|
Probab=98.59 E-value=1.5e-05 Score=93.49 Aligned_cols=256 Identities=10% Similarity=0.036 Sum_probs=154.0
Q ss_pred CCEEEEEECCCcEEEEeCCCCeEEEEeccCCC----CeE-EEEEcC---CCC-EEEEEe------CCCeEEEEEcCCCCc
Q 003236 567 GKLLATGGHDKKAVLWCTESFTVKSTLEEHTQ----WIT-DVRFSP---SLS-RLATSS------ADRTVRVWDTENPDY 631 (837)
Q Consensus 567 g~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~----~I~-~l~fsp---dg~-~Latgs------~Dg~I~IWDl~~~~~ 631 (837)
+..|++++.|+.|+.+|.++++.+........ .+. ...+.. +++ .|++++ .++.|+.+|..+++.
T Consensus 117 ~~~v~~~t~dg~l~AlD~~TG~~~W~~~~~~~~~~~~~~~sP~v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG~~ 196 (582)
T 1flg_A 117 GDKVFFGTLDASVVALNKNTGKVVWKKKFADHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEE 196 (582)
T ss_dssp TTEEEEEETTTEEEEEESSSCCEEEEEECSCGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCE
T ss_pred CCEEEEEeCCCEEEEEECCCCCEEeeecCCCCCcCcccccCCEEeCCCcCCcEEEEEeccccccCCCCEEEEEECCCCCE
Confidence 45788888999999999999999866543221 111 111111 233 566654 378999999998875
Q ss_pred eeEEeecccc-----------------------------------------ceEEEEEcCCCCeEEEEEe----------
Q 003236 632 SLRTFTGHST-----------------------------------------TVMSLDFHPSKEDLLCSCD---------- 660 (837)
Q Consensus 632 ~~~~~~~h~~-----------------------------------------~V~sl~fspdg~~llasgs---------- 660 (837)
.- ....... .-..++++|+...+++..+
T Consensus 197 ~W-~~~~~~~~~~p~~~~~~~~~g~~g~~~w~~~~~~~~g~~~~~~~gGg~~w~~~a~d~~~g~vyv~~gn~~~~~~~~r 275 (582)
T 1flg_A 197 IW-MRPFVEGHMGRLNGKDSTVTGDVKAPSWPDDRNSPTGKVESWSHGGGAPWQSASFDAETNTIIVGAGNPGPWNTWAR 275 (582)
T ss_dssp EE-EEESSTTCEEEETTEEEEESSCTTCTTSCBCTTSTTSBCGGGGGCBCCCCSCCEEETTTTEEEEEECCBSSSCGGGG
T ss_pred Ee-ecCCCccccccccCcccccccccccccCCCccccccccccccccCCccccCCceEcCCCCEEEEeCCCCCcccCccc
Confidence 33 2221100 0013456666555554432
Q ss_pred --C-------C----CcEEEEECCCCeeeeEEecCC-------CeeE-EEEe---cCCC---EEEEEEcCCeEEEEECCC
Q 003236 661 --N-------N----SEIRYWSINNGSCAGVFKCQS-------GATQ-MRFQ---PRLG---RILAAAIENYISILDVET 713 (837)
Q Consensus 661 --~-------D----g~I~vwDl~t~~~i~~~~~~~-------~i~s-l~~s---p~g~---~llags~dg~I~iwDl~s 713 (837)
. | +.|..+|.++++.+..+.... .+.. +.+. .+++ .++.++.+|.|+++|.++
T Consensus 276 ~~~gg~~~~~d~~~~~~v~AlD~~TG~~~W~~q~~~~d~wd~~~~~~p~l~~~~~~~G~~~~~v~~~~~~G~l~~lD~~t 355 (582)
T 1flg_A 276 TAKGGNPHDYDSLYTSGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELVLFDYKAKDGKIVKATAHADRNGFFYVVDRSN 355 (582)
T ss_dssp SCTTSCSTTCCCTTCSEEEEECTTTCCEEEEEESSTTCCSCCCCCCCCEEEEEECSSSCEEEEEEEECTTSEEEEEETTT
T ss_pred ccCCCcccccCCcccceEEEEeCCCCCEEEEEeCCCCCcccccCCCCcEEEeeecCCCCEEEEEEEECCCceEEEEECCC
Confidence 1 2 589999999999999886421 1111 2222 3563 677788899999999999
Q ss_pred CeEEEEEcCCCC--CE-------------------------------------------EEEEEcCCCCEEEEEe-----
Q 003236 714 QVCRLKLQGHKN--QV-------------------------------------------HSVCWNTSGEYLASVS----- 743 (837)
Q Consensus 714 ~~~~~~l~~h~~--~V-------------------------------------------~sl~~spdg~~Lasgs----- 743 (837)
++.+..+..... .. ..++++|+..++++..
T Consensus 356 G~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~ 435 (582)
T 1flg_A 356 GKLQNAFPFVDNITWASHIDLKTGRPVEREGQRPPLPEPGQKHGKAVEVSPPFLGGKNWNPMAYSQDTGLFYVPANHWKE 435 (582)
T ss_dssp CCEEEEEESSSCCCSEEEECTTTCCEEECTTCSCCCCCTTCSSCCCEEESSCTTCSSCSSCCEECTTTCCEEEEEECEEE
T ss_pred CCEecccccccCccccccccccCCCEeEccccCCccccccccCCCceEECcCCccccCCCCceECCCCCEEEEechhcce
Confidence 998876654320 00 1245666544444321
Q ss_pred -----------------------------CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEE
Q 003236 744 -----------------------------DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLEL 794 (837)
Q Consensus 744 -----------------------------Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fspdg~~L~sgs~dg~I~I 794 (837)
++.|..||+.++ +.+....... .+..-.+...+..+++++.|+.|+.
T Consensus 436 ~~~~~~~~~~~g~~~~g~~~~~~p~~~~~~G~l~A~D~~tG---~~~W~~~~~~-~~~~g~~~tagglvf~g~~dg~l~A 511 (582)
T 1flg_A 436 DYWTEEVSYTKGSAYLGMGFRIKRMYDDHVGSLRAMDPVSG---KVVWEHKEHL-PLWAGVLATAGNLVFTGTGDGYFKA 511 (582)
T ss_dssp EEEECCCCCCTTSCCCCEEEEEEESCSSCSEEEEEECTTTC---CEEEEEEESS-CCCSCCEEETTTEEEEECTTSEEEE
T ss_pred eeecccccccCCCceeccceeecCCCCCCcceEEEEECCCC---CEEEEecCCC-CCcccceEeCCCEEEEECCCCcEEE
Confidence 467888999888 4444433221 2222222334667888999999999
Q ss_pred EECCCCcEE-EeccCCCCe-eEEEEeCCCC-EEEEE
Q 003236 795 WNMTENKTL-TLSAHDKLV-SSLAASTVNG-MVASA 827 (837)
Q Consensus 795 wDl~s~~~~-~l~~h~~~V-~sla~spdg~-~LaSg 827 (837)
||.++++.+ .+......+ .-+.|..+|+ ||++.
T Consensus 512 ~D~~tG~~lW~~~~~~g~~a~P~~y~~~G~qYv~~~ 547 (582)
T 1flg_A 512 FDAKSGKELWKFQTGSGIVSPPITWEQDGEQYLGVT 547 (582)
T ss_dssp EETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEE
T ss_pred EECCCCCEEEEecCCCCcccCceEEEECCEEEEEEE
Confidence 999999988 443322221 2256667887 44443
|
| >2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus} | Back alignment and structure |
|---|
Probab=98.58 E-value=8.7e-05 Score=80.38 Aligned_cols=276 Identities=8% Similarity=-0.015 Sum_probs=155.0
Q ss_pred CeeeeEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEec----cCCCCeEEEEEcCCCCEEEEEeC
Q 003236 542 GFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLE----EHTQWITDVRFSPSLSRLATSSA 617 (837)
Q Consensus 542 g~~~~~~~~l~~H~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~----~h~~~I~~l~fspdg~~Latgs~ 617 (837)
+.++..+. + .....+.+|.|.+++..+++ +.+|.| +...+.++.-..+. .....+.+|.|.+ +. ++.++.
T Consensus 24 g~~W~~~~-~-~~~~~~~~v~~~~~~~~~~~-G~~g~i-~~s~DgG~tW~~~~~~~~~~~~~~~~i~~~~-~~-~~~~g~ 97 (327)
T 2xbg_A 24 YNPWEAIQ-L-PTTATILDMSFIDRHHGWLV-GVNATL-METRDGGQTWEPRTLVLDHSDYRFNSVSFQG-NE-GWIVGE 97 (327)
T ss_dssp SCCEEEEE-C-SCSSCEEEEEESSSSCEEEE-ETTTEE-EEESSTTSSCEECCCCCSCCCCEEEEEEEET-TE-EEEEEE
T ss_pred CCCceEee-c-CCCCcEEEEEECCCCcEEEE-cCCCeE-EEeCCCCCCCeECCCCCCCCCccEEEEEecC-Ce-EEEEEC
Confidence 44454443 2 23447999999888877775 456765 33334333222221 2344688999976 34 444556
Q ss_pred CCeEEEEEcCCCCceeEEee---ccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeeEEe--cCCCeeEEEEec
Q 003236 618 DRTVRVWDTENPDYSLRTFT---GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK--CQSGATQMRFQP 692 (837)
Q Consensus 618 Dg~I~IWDl~~~~~~~~~~~---~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~--~~~~i~sl~~sp 692 (837)
++.|+. ..+.++ ...... .+...+..|.+.+++ .+++.+ .++.|+. ....++.-.... ....+..+.+.+
T Consensus 98 ~g~i~~-S~DgG~-tW~~~~~~~~~~~~~~~i~~~~~~-~~~~~~-~~g~v~~-S~DgG~tW~~~~~~~~~~~~~~~~~~ 172 (327)
T 2xbg_A 98 PPIMLH-TTDGGQ-SWSQIPLDPKLPGSPRLIKALGNG-SAEMIT-NVGAIYR-TKDSGKNWQALVQEAIGVMRNLNRSP 172 (327)
T ss_dssp TTEEEE-ESSTTS-SCEECCCCTTCSSCEEEEEEEETT-EEEEEE-TTCCEEE-ESSTTSSEEEEECSCCCCEEEEEECT
T ss_pred CCeEEE-ECCCCC-CceECccccCCCCCeEEEEEECCC-CEEEEe-CCccEEE-EcCCCCCCEEeecCCCcceEEEEEcC
Confidence 675443 222222 122221 233457778877654 355444 3554432 222233222222 234678899998
Q ss_pred CCCEEEEEEcCCeEEEE-EC--CCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCeEEEEEcCCCCCceeEEEee----
Q 003236 693 RLGRILAAAIENYISIL-DV--ETQVCRLKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELS---- 765 (837)
Q Consensus 693 ~g~~llags~dg~I~iw-Dl--~s~~~~~~l~~h~~~V~sl~~spdg~~LasgsDg~I~IwDl~s~~~~~~i~~~~---- 765 (837)
++..++ ++.++.|..- |- .+.+.+. ......+..+.+.+++.+++++.+|.+++.+...+ .....+.
T Consensus 173 ~~~~~~-~g~~G~~~~S~d~gG~tW~~~~--~~~~~~~~~~~~~~~g~~~~~~~~G~~~~s~~D~G---~tW~~~~~~~~ 246 (327)
T 2xbg_A 173 SGEYVA-VSSRGSFYSTWEPGQTAWEPHN--RTTSRRLHNMGFTPDGRLWMIVNGGKIAFSDPDNS---ENWGELLSPLR 246 (327)
T ss_dssp TSCEEE-EETTSSEEEEECTTCSSCEEEE--CCSSSCEEEEEECTTSCEEEEETTTEEEEEETTEE---EEECCCBCTTS
T ss_pred CCcEEE-EECCCcEEEEeCCCCCceeECC--CCCCCccceeEECCCCCEEEEeCCceEEEecCCCC---CeeEeccCCcc
Confidence 866554 4455555443 42 3334432 23556789999999998887777888877643222 1111111
Q ss_pred cCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEEE-ec---cCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 003236 766 CTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLT-LS---AHDKLVSSLAASTVNGMVASASHDKCVKIWK 837 (837)
Q Consensus 766 ~~~~~I~sv~fspdg~~L~sgs~dg~I~IwDl~s~~~~~-l~---~h~~~V~sla~spdg~~LaSgs~DG~I~IWd 837 (837)
.....+..+++.+++. +++++.++.| ++..+.++... +. .+...+.++.|.+++ .+++++.+|.|.-++
T Consensus 247 ~~~~~~~~v~~~~~~~-~~~~g~~g~i-~~S~DgG~tW~~~~~~~~~~~~~~~v~~~~~~-~~~~~G~~G~i~~~~ 319 (327)
T 2xbg_A 247 RNSVGFLDLAYRTPNE-VWLAGGAGAL-LCSQDGGQTWQQDVDVKKVPSNFYKILFFSPD-QGFILGQKGILLRYV 319 (327)
T ss_dssp SCCSCEEEEEESSSSC-EEEEESTTCE-EEESSTTSSCEECGGGTTSSSCCCEEEEEETT-EEEEECSTTEEEEEC
T ss_pred cCCcceEEEEecCCCE-EEEEeCCCeE-EEeCCCCcccEEcCccCCCCCCeEEEEEECCC-ceEEEcCCceEEEEc
Confidence 1224588899998776 4555567766 45555565443 22 234568889997554 466677889887654
|
| >3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B | Back alignment and structure |
|---|
Probab=98.54 E-value=4.2e-05 Score=82.73 Aligned_cols=227 Identities=7% Similarity=0.012 Sum_probs=145.3
Q ss_pred EEEEEECCCcEEEEeCCCCe--EEEEeccCCCCeEEEEEcCCCCEEE-EEeCCCeEEEEEcCCCCceeEEeeccccceEE
Q 003236 569 LLATGGHDKKAVLWCTESFT--VKSTLEEHTQWITDVRFSPSLSRLA-TSSADRTVRVWDTENPDYSLRTFTGHSTTVMS 645 (837)
Q Consensus 569 ~Lasgs~Dg~I~VWd~~t~~--~~~~l~~h~~~I~~l~fspdg~~La-tgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~s 645 (837)
+|+.+. ...|+.++++... ....+. ....+..++|++.+..|+ +-...+.|..+++.........+...-.....
T Consensus 6 ~ll~~~-~~~I~~i~l~~~~~~~~~~~~-~~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~g 83 (318)
T 3sov_A 6 LLLYAN-RRDLRLVDATNGKENATIVVG-GLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDG 83 (318)
T ss_dssp EEEEEC-EEEEEEEETTCTTSCCEEEEE-EEEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCE
T ss_pred EEEEEc-cCeEEEEECCCCceEEEEEec-CCCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccE
Confidence 344433 4678889887653 222222 223567899998655554 44557889999988653212222222345678
Q ss_pred EEEcCCCCeEEEEEeCCCcEEEEECCCCeeeeEE-ecCCCeeEEEEecCCCEEEEEEc--CCeEEEEECCCCeEEEEEcC
Q 003236 646 LDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVF-KCQSGATQMRFQPRLGRILAAAI--ENYISILDVETQVCRLKLQG 722 (837)
Q Consensus 646 l~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~-~~~~~i~sl~~sp~g~~llags~--dg~I~iwDl~s~~~~~~l~~ 722 (837)
+++.+.+..++++-...+.|.++++........+ ........+++.|.++.++.+.. .+.|..+++........+..
T Consensus 84 lavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~ 163 (318)
T 3sov_A 84 LACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINS 163 (318)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSCEEEECS
T ss_pred EEEEcCCCeEEEEECCCCEEEEEECCCCcEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCeEEEEEC
Confidence 9998877778877777889999998754333332 22345789999998888888774 47899998875433323333
Q ss_pred CCCCEEEEEEcCCCCEEEEEe--CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEE-cCCeEEEEECCC
Q 003236 723 HKNQVHSVCWNTSGEYLASVS--DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIG-CYETLELWNMTE 799 (837)
Q Consensus 723 h~~~V~sl~~spdg~~Lasgs--Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fspdg~~L~sgs-~dg~I~IwDl~s 799 (837)
.-.....|+|++++..|+.+. .+.|..+|+..... ..+ ..........+++.. ..++... ..+.|..+|..+
T Consensus 164 ~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~~~-~~~--~~~~~~~P~glav~~--~~lywtd~~~~~V~~~~~~~ 238 (318)
T 3sov_A 164 EIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNR-QAV--VKGSLPHPFALTLFE--DILYWTDWSTHSILACNKYT 238 (318)
T ss_dssp SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEE--ECSCCSCEEEEEEET--TEEEEEETTTTEEEEEETTT
T ss_pred CCCCccEEEEeccCCEEEEEECCCCEEEEEcCCCCce-EEE--ecCCCCCceEEEEeC--CEEEEEecCCCeEEEEECCC
Confidence 345678999999877777766 67999999875422 222 222344556777753 3455554 456899999876
Q ss_pred CcE
Q 003236 800 NKT 802 (837)
Q Consensus 800 ~~~ 802 (837)
++.
T Consensus 239 G~~ 241 (318)
T 3sov_A 239 GEG 241 (318)
T ss_dssp CCS
T ss_pred CCc
Confidence 653
|
| >3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=98.54 E-value=9.3e-05 Score=81.00 Aligned_cols=228 Identities=9% Similarity=0.038 Sum_probs=146.6
Q ss_pred eEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeEEeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeeEE
Q 003236 600 ITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVF 679 (837)
Q Consensus 600 I~~l~fspdg~~Latgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~ 679 (837)
.+|.+..++ .+|+.+ ....|+..++..... ..+......+..++|++.+..++++-...+.|+.+++........+
T Consensus 36 ~~C~~~~~~-~~ll~~-~~~~I~~i~~~g~~~--~~~~~~~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~ 111 (349)
T 3v64_C 36 RSCKALGPE-PVLLFA-NRIDIRQVLPHRSEY--TLLLNNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVV 111 (349)
T ss_dssp SCEEESSSC-CEEEEE-CBSCEEEECTTSCCE--EEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEE
T ss_pred CcccccccC-ceeEee-cccceEEEeCCCCee--EEeecCCCceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEE
Confidence 344444443 344443 344588888875442 3333334558899999887878877777889999999876544433
Q ss_pred ec-CCCeeEEEEecCCCEEEEEEc-CCeEEEEECCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEe--C-CeEEEEEcCC
Q 003236 680 KC-QSGATQMRFQPRLGRILAAAI-ENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS--D-ELVRVWSIGS 754 (837)
Q Consensus 680 ~~-~~~i~sl~~sp~g~~llags~-dg~I~iwDl~s~~~~~~l~~h~~~V~sl~~spdg~~Lasgs--D-g~I~IwDl~s 754 (837)
.. ......+++.+.++.|+.+.. .+.|.++++........+...-.....++++|.+.+|+.+. . +.|..+++..
T Consensus 112 ~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG 191 (349)
T 3v64_C 112 STGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDG 191 (349)
T ss_dssp CSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTS
T ss_pred eCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceEEEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCC
Confidence 32 245678999987777776665 57999999886544444444446789999999776666655 4 6788888765
Q ss_pred CCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcC-CeEEEEECCCCcEEE-eccCCCCeeEEEEeCCCCEEEEEECCCc
Q 003236 755 GSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCY-ETLELWNMTENKTLT-LSAHDKLVSSLAASTVNGMVASASHDKC 832 (837)
Q Consensus 755 ~~~~~~i~~~~~~~~~I~sv~fspdg~~L~sgs~d-g~I~IwDl~s~~~~~-l~~h~~~V~sla~spdg~~LaSgs~DG~ 832 (837)
.. ..............+++++++..|+++... +.|..+|+....... +.........|++. .+.++++-...+.
T Consensus 192 ~~---~~~~~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~~~~~~~~~~~~~P~giav~-~~~ly~td~~~~~ 267 (349)
T 3v64_C 192 SG---RRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAITVF-EDSLYWTDWHTKS 267 (349)
T ss_dssp CS---CEESCCSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEE-TTEEEEEETTTTE
T ss_pred CC---cEEEEECCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCCceEEEEeCCCCCceEEEEE-CCEEEEecCCCCe
Confidence 42 111122234457899999988888887764 589999987654333 33334567788883 3444444434455
Q ss_pred EEE
Q 003236 833 VKI 835 (837)
Q Consensus 833 I~I 835 (837)
|..
T Consensus 268 V~~ 270 (349)
T 3v64_C 268 INS 270 (349)
T ss_dssp EEE
T ss_pred EEE
Confidence 544
|
| >1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 | Back alignment and structure |
|---|
Probab=98.53 E-value=0.00016 Score=77.94 Aligned_cols=219 Identities=9% Similarity=0.018 Sum_probs=140.7
Q ss_pred EEEEEeCCCeEEEEEcCCCCceeEEeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCC----CeeeeEEec-CCCe
Q 003236 611 RLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN----GSCAGVFKC-QSGA 685 (837)
Q Consensus 611 ~Latgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t----~~~i~~~~~-~~~i 685 (837)
+|+.+. ...|+..|+..... ...+ .....+..++|++.+..++++-..++.|..+++.. ......+.. ....
T Consensus 3 ~ll~~~-~~~I~~i~~~~~~~-~~~~-~~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p 79 (316)
T 1ijq_A 3 YLFFTN-RHEVRKMTLDRSEY-TSLI-PNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAP 79 (316)
T ss_dssp EEEEEC-BSSEEEEETTSCCC-EEEE-CSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCC
T ss_pred EEEEEC-CCeEEEEECCCcce-Eehh-cCCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCc
Confidence 344443 35689999987653 2222 33456789999998787887877789999999886 222222221 2456
Q ss_pred eEEEEecCCCEEEEEE-cCCeEEEEECCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEe--C-CeEEEEEcCCCCCceeE
Q 003236 686 TQMRFQPRLGRILAAA-IENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS--D-ELVRVWSIGSGSKGECI 761 (837)
Q Consensus 686 ~sl~~sp~g~~llags-~dg~I~iwDl~s~~~~~~l~~h~~~V~sl~~spdg~~Lasgs--D-g~I~IwDl~s~~~~~~i 761 (837)
..+++.+.++.|+.+. ..+.|.++|+........+.........++++|.+..|+.+. . +.|..+++.... ..
T Consensus 80 ~glavd~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~---~~ 156 (316)
T 1ijq_A 80 DGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVD---IY 156 (316)
T ss_dssp CEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCC---EE
T ss_pred CEEEEeecCCeEEEEECCCCEEEEEeCCCCceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCCC---eE
Confidence 7899998777777665 468999999986544444443445788999999766665555 3 688888876431 11
Q ss_pred EEeecCCCceEEEEEeCCCCEEEEEEcC-CeEEEEECCCCcEEEec---cCCCCeeEEEEeCCCCEEEEEECCCcEEEe
Q 003236 762 HELSCTGNKFHSCVFHPTFPSLLVIGCY-ETLELWNMTENKTLTLS---AHDKLVSSLAASTVNGMVASASHDKCVKIW 836 (837)
Q Consensus 762 ~~~~~~~~~I~sv~fspdg~~L~sgs~d-g~I~IwDl~s~~~~~l~---~h~~~V~sla~spdg~~LaSgs~DG~I~IW 836 (837)
......-.....+++++++..|+++... +.|..+|+.......+. ........|++. .+.++++-...+.|..+
T Consensus 157 ~~~~~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~~~~~~~~~~~~~~~P~giav~-~~~ly~~d~~~~~V~~~ 234 (316)
T 1ijq_A 157 SLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSA 234 (316)
T ss_dssp EEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE-TTEEEEEETTTTEEEEE
T ss_pred EEEECCCCCceEEEEeccCCEEEEEECCCCeEEEEecCCCceEEEeecCCccCCcEEEEEE-CCEEEEEECCCCeEEEE
Confidence 1112234567899999988888887754 59999999764433332 223456788885 34455554455666554
|
| >3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L | Back alignment and structure |
|---|
Probab=98.53 E-value=0.00021 Score=79.77 Aligned_cols=230 Identities=8% Similarity=-0.033 Sum_probs=151.5
Q ss_pred EEEEEECCCcEEEEeCCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEe-CCCeEEEEEcCCCC---ceeEEeeccccceE
Q 003236 569 LLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSS-ADRTVRVWDTENPD---YSLRTFTGHSTTVM 644 (837)
Q Consensus 569 ~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs-~Dg~I~IWDl~~~~---~~~~~~~~h~~~V~ 644 (837)
+|+.+. ...|+..+++.......+. ....+..|+|++.+..|+.+. ..+.|+.+++.... .....+........
T Consensus 85 ~ll~~~-~~~I~~i~l~~~~~~~~~~-~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~ 162 (400)
T 3p5b_L 85 YLFFTN-RHEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPD 162 (400)
T ss_dssp EEEEEE-TTEEEEECTTSCSCEEEEC-SCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEE
T ss_pred eeEEec-cceeEEEccCCcceeEecc-ccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcc
Confidence 555544 4689999988765554443 456788999998666665554 56889999987522 11223333445678
Q ss_pred EEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeeEEe-cCCCeeEEEEecCCCEEEEEEc--CCeEEEEECCCCeEEEEEc
Q 003236 645 SLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK-CQSGATQMRFQPRLGRILAAAI--ENYISILDVETQVCRLKLQ 721 (837)
Q Consensus 645 sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~-~~~~i~sl~~sp~g~~llags~--dg~I~iwDl~s~~~~~~l~ 721 (837)
.+++.+.+..++++-...+.|.+.++........+. .......+++.|.+++|+.+.. .+.|..+++........+.
T Consensus 163 glavD~~~~~lY~~d~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~~~~~ 242 (400)
T 3p5b_L 163 GLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVT 242 (400)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEECTTTCSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCEEEEC
T ss_pred cEEEEecCCceEEEECCCCeEEEEeCCCCceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCccEEEEE
Confidence 899998777788787778899999998665444444 2345789999998888887764 3689999987654443444
Q ss_pred CCCCCEEEEEEcCCCCEEEEEe--CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEc-CCeEEEEECC
Q 003236 722 GHKNQVHSVCWNTSGEYLASVS--DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGC-YETLELWNMT 798 (837)
Q Consensus 722 ~h~~~V~sl~~spdg~~Lasgs--Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fspdg~~L~sgs~-dg~I~IwDl~ 798 (837)
..-.....|++++++..|+.+. .+.|..+|+..... ..+......-.....+++. +..|+.... .+.|..+|..
T Consensus 243 ~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~~-~~~~~~~~~l~~P~gl~v~--~~~lywtd~~~~~V~~~~~~ 319 (400)
T 3p5b_L 243 ENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNR-KTILEDEKRLAHPFSLAVF--EDKVFWTDIINEAIFSANRL 319 (400)
T ss_dssp SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCC-EEEEECSSTTSSEEEEEEE--TTEEEEEESSSCSEEEEESS
T ss_pred CCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCcc-EEEEeCCCCCCCCEEEEEe--CCEEEEecCCCCeEEEEEcC
Confidence 4446789999999888777776 67899999875432 2222221222345566663 345555554 4589999976
Q ss_pred CCcEE
Q 003236 799 ENKTL 803 (837)
Q Consensus 799 s~~~~ 803 (837)
+++.+
T Consensus 320 ~G~~~ 324 (400)
T 3p5b_L 320 TGSDV 324 (400)
T ss_dssp SCCCC
T ss_pred CCCce
Confidence 66543
|
| >2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major} | Back alignment and structure |
|---|
Probab=98.50 E-value=1.1e-05 Score=97.91 Aligned_cols=238 Identities=10% Similarity=0.046 Sum_probs=135.4
Q ss_pred CeEEEEEc-CCCCEEEEEEC-CC----cEEEEeCCCC-eEEE-EeccCCCCeEEEEEcCCCCEEEEEeCC-----CeEEE
Q 003236 557 KVESCHFS-PDGKLLATGGH-DK----KAVLWCTESF-TVKS-TLEEHTQWITDVRFSPSLSRLATSSAD-----RTVRV 623 (837)
Q Consensus 557 ~V~sl~fS-pdg~~Lasgs~-Dg----~I~VWd~~t~-~~~~-~l~~h~~~I~~l~fspdg~~Latgs~D-----g~I~I 623 (837)
.+...+|| |||++||.+.. +| .|+++|+.++ +.+. .+ ......++|+||++.|+....| ..|++
T Consensus 175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~---~~~~~~~~WspDg~~l~y~~~d~~~~~~~v~~ 251 (751)
T 2xe4_A 175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKV---SGTNGEIVWGPDHTSLFYVTKDETLRENKVWR 251 (751)
T ss_dssp EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCCE---EEECSCCEECSSTTEEEEEEECTTCCEEEEEE
T ss_pred EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCccc---cCceeeEEEecCCCEEEEEEECCCCCCCEEEE
Confidence 57889999 99998886643 22 4999999988 6321 11 1124578899999988887765 36888
Q ss_pred EEcCCCCce-eEEee-ccccceEEEEEcCCCCeEEEEEeC--CCcEEEEECCCCe--e--eeEEec-CCCeeEEEEecCC
Q 003236 624 WDTENPDYS-LRTFT-GHSTTVMSLDFHPSKEDLLCSCDN--NSEIRYWSINNGS--C--AGVFKC-QSGATQMRFQPRL 694 (837)
Q Consensus 624 WDl~~~~~~-~~~~~-~h~~~V~sl~fspdg~~llasgs~--Dg~I~vwDl~t~~--~--i~~~~~-~~~i~sl~~sp~g 694 (837)
+++.++... ...+. ........+.|+||+..++++... ...|+++|+.++. . ...... ......+.|+. +
T Consensus 252 ~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~s~~~~~-g 330 (751)
T 2xe4_A 252 HVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPREKGVRYDVQMHG-T 330 (751)
T ss_dssp EETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCCTTCCEEEEEET-T
T ss_pred EECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEeecCCCCceEEEeeee-C
Confidence 888775421 22322 233456788999999988877643 3468889998752 2 222221 22334444443 5
Q ss_pred CEEEEEEcC-----CeEEEEECCCCeEEEE-EcCCCC--CEEEEEEcCCCCEEEEE-e-CC--eEEEEEc-------CCC
Q 003236 695 GRILAAAIE-----NYISILDVETQVCRLK-LQGHKN--QVHSVCWNTSGEYLASV-S-DE--LVRVWSI-------GSG 755 (837)
Q Consensus 695 ~~llags~d-----g~I~iwDl~s~~~~~~-l~~h~~--~V~sl~~spdg~~Lasg-s-Dg--~I~IwDl-------~s~ 755 (837)
+.|+..+.. ..|.++|+.+...... +..+.. .+..+.+. +..|+.. . ++ .|.++|+ .++
T Consensus 331 ~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~~~~~l~~~~~~--~~~lv~~~~~~g~~~l~~~dl~~~~~~~~~g 408 (751)
T 2xe4_A 331 SHLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHSEDVFMESIAVR--SNYLVVAGRRAGLTRIWTMMADSQDGVFKAG 408 (751)
T ss_dssp TEEEEEECTTTCTTCEEEEEETTSTTCCCCEEECCCSSEEEEEEEEC--SSEEEEEEEETTEEEEEEEECCTTTSCCCTT
T ss_pred CEEEEEeCCCCCCCcEEEEEcCCCcccceeeEECCCCCcEEEEEEEE--CCEEEEEEEeCCEEEEEEEecccccccccCC
Confidence 666655543 2688888875211112 222333 34555554 4555444 4 77 4666665 222
Q ss_pred CCceeEEEeecCC-CceEEEEE----eCCCCEE-EEEEcC---CeEEEEECCCCcEE
Q 003236 756 SKGECIHELSCTG-NKFHSCVF----HPTFPSL-LVIGCY---ETLELWNMTENKTL 803 (837)
Q Consensus 756 ~~~~~i~~~~~~~-~~I~sv~f----spdg~~L-~sgs~d---g~I~IwDl~s~~~~ 803 (837)
. .+..+.... ..+..+.+ ++++..+ ++.++. ..|+.+|+.+++..
T Consensus 409 ~---~~~~l~l~~~~~~~~~~~~~~~~~~~~~l~~~~ss~~~P~~~~~~d~~~~~~~ 462 (751)
T 2xe4_A 409 T---GLREVVMEEPIFTVHLVESQMLEYEEPTFRMEYSSLATPNTWFDVSPQDHSRT 462 (751)
T ss_dssp T---CCEECCCCCSSCEEEECGGGCCCTTCSCEEEEEEETTEEEEEEEECTTTCCEE
T ss_pred c---cceEECCCCceeEEEeccCcccCCCCCEEEEEEeCCCCCCEEEEEECCCCcEE
Confidence 1 022222111 12233322 3455444 444443 27888888877654
|
| >3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.49 E-value=3.9e-05 Score=80.07 Aligned_cols=199 Identities=11% Similarity=0.150 Sum_probs=133.2
Q ss_pred EeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeeEEecC--CCeeEEEEecCCCEEEEEEcCCeEEEEECC
Q 003236 635 TFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ--SGATQMRFQPRLGRILAAAIENYISILDVE 712 (837)
Q Consensus 635 ~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~~--~~i~sl~~sp~g~~llags~dg~I~iwDl~ 712 (837)
.+.+-...+..++|+|+++.++++...++.|...|+. ++.+..+... .....+++.+++.++++.-.++.+.++++.
T Consensus 21 ~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~ 99 (255)
T 3qqz_A 21 EIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVISLT 99 (255)
T ss_dssp ECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEEEEEC
T ss_pred ECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEEEEcC
Confidence 4455557899999999988888888889999999998 8888887653 468889998887655554456789999876
Q ss_pred CCe---EEEEEc------CCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEee-------cCCCceEEEE
Q 003236 713 TQV---CRLKLQ------GHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELS-------CTGNKFHSCV 775 (837)
Q Consensus 713 s~~---~~~~l~------~h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~-------~~~~~I~sv~ 775 (837)
... .+.... ........|+|+|++..|+++. .+...||.+........+..+. .....+..++
T Consensus 100 ~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l~ 179 (255)
T 3qqz_A 100 PNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGAE 179 (255)
T ss_dssp TTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEEE
T ss_pred CCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCceeEE
Confidence 543 222221 1344568999999997777776 3344455443110001111111 1234678999
Q ss_pred EeCCCCEEEEEEcCC-eEEEEECCCCcEE---Eecc-C------CCCeeEEEEeCCCCEEEEEECCCcEEEe
Q 003236 776 FHPTFPSLLVIGCYE-TLELWNMTENKTL---TLSA-H------DKLVSSLAASTVNGMVASASHDKCVKIW 836 (837)
Q Consensus 776 fspdg~~L~sgs~dg-~I~IwDl~s~~~~---~l~~-h------~~~V~sla~spdg~~LaSgs~DG~I~IW 836 (837)
++|....+++.+... .|.++|.... .+ .+.. . -.....|+|.++|+++++ ++...+++|
T Consensus 180 ~dp~tg~lliLS~~s~~L~~~d~~g~-~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~lyIv-sE~n~~y~f 249 (255)
T 3qqz_A 180 FNQQKNTLLVLSHESRALQEVTLVGE-VIGEMSLTKGSRGLSHNIKQAEGVAMDASGNIYIV-SEPNRFYRF 249 (255)
T ss_dssp EETTTTEEEEEETTTTEEEEECTTCC-EEEEEECSTTGGGCSSCCCSEEEEEECTTCCEEEE-ETTTEEEEE
T ss_pred EcCCCCeEEEEECCCCeEEEEcCCCC-EEEEEEcCCccCCcccccCCCCeeEECCCCCEEEE-cCCceEEEE
Confidence 999887777766654 8889997755 44 2221 1 125689999999985555 676666655
|
| >3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=98.48 E-value=8e-05 Score=82.72 Aligned_cols=228 Identities=9% Similarity=0.032 Sum_probs=148.3
Q ss_pred EEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeEEeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeeEEe
Q 003236 601 TDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK 680 (837)
Q Consensus 601 ~~l~fspdg~~Latgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~ 680 (837)
.|.+..+ ..+|+.+ ....|+.+++..... ..+......+..++|++.+..++++-...+.|+.+++........+.
T Consensus 80 ~C~~~~~-~~~l~~~-~~~~I~~i~~~~~~~--~~~~~~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~ 155 (386)
T 3v65_B 80 SCKALGP-EPVLLFA-NRIDIRQVLPHRSEY--TLLLNNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVS 155 (386)
T ss_dssp CEEECSS-CCEEEEE-CBSCEEEECTTSCCC--EEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEEC
T ss_pred eECCccc-cceeEee-cCccceeeccCCCcE--EEEecCCCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEe
Confidence 3444444 3344444 345688888876543 23333345688999998878788777778899999998765444433
Q ss_pred c-CCCeeEEEEecCCCEEEEEEc-CCeEEEEECCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEe--C-CeEEEEEcCCC
Q 003236 681 C-QSGATQMRFQPRLGRILAAAI-ENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS--D-ELVRVWSIGSG 755 (837)
Q Consensus 681 ~-~~~i~sl~~sp~g~~llags~-dg~I~iwDl~s~~~~~~l~~h~~~V~sl~~spdg~~Lasgs--D-g~I~IwDl~s~ 755 (837)
. ......+++.+.++.|+.+.. .+.|.++++........+.........|+++|.+.+|+.+. . +.|..+++...
T Consensus 156 ~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~ 235 (386)
T 3v65_B 156 TGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGS 235 (386)
T ss_dssp SSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSCEEEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSC
T ss_pred CCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceEEeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCC
Confidence 2 234677899987777776665 57899999876544444444446789999999877766665 4 67888887654
Q ss_pred CCceeEEEeecCCCceEEEEEeCCCCEEEEEEcC-CeEEEEECCCCcEEE-eccCCCCeeEEEEeCCCCEEEEEECCCcE
Q 003236 756 SKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCY-ETLELWNMTENKTLT-LSAHDKLVSSLAASTVNGMVASASHDKCV 833 (837)
Q Consensus 756 ~~~~~i~~~~~~~~~I~sv~fspdg~~L~sgs~d-g~I~IwDl~s~~~~~-l~~h~~~V~sla~spdg~~LaSgs~DG~I 833 (837)
. ........-.....++|+|++..|+++... +.|..+|+....... +.........|++. .+.++++-...+.|
T Consensus 236 ~---~~~~~~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~giav~-~~~ly~td~~~~~V 311 (386)
T 3v65_B 236 G---RRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAITVF-EDSLYWTDWHTKSI 311 (386)
T ss_dssp S---CEEEECSSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSCSCEEEECSSCSSEEEEEEE-TTEEEEEETTTTEE
T ss_pred C---cEEEEECCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCCeeEEEEECCCCCceEEEEE-CCEEEEeeCCCCeE
Confidence 2 112222234457899999988888887664 589999987654433 33334567788883 34444454455566
Q ss_pred EEe
Q 003236 834 KIW 836 (837)
Q Consensus 834 ~IW 836 (837)
..+
T Consensus 312 ~~~ 314 (386)
T 3v65_B 312 NSA 314 (386)
T ss_dssp EEE
T ss_pred EEE
Confidence 544
|
| >3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=98.43 E-value=8.2e-05 Score=83.93 Aligned_cols=235 Identities=10% Similarity=0.120 Sum_probs=143.6
Q ss_pred CeEEEEEcC-CCCEEEEEECCCcEEEEeCCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCC-----CeEEEEEcCCCC
Q 003236 557 KVESCHFSP-DGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSAD-----RTVRVWDTENPD 630 (837)
Q Consensus 557 ~V~sl~fSp-dg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~D-----g~I~IWDl~~~~ 630 (837)
....|+|+| ++..|+++...+.|+.+|++++....... .......|+|++++++|+++... ..+.+++.....
T Consensus 138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~~~~-~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~~g~~ 216 (430)
T 3tc9_A 138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVSTVYS-GLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTRESGF 216 (430)
T ss_dssp CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEEEEC-CCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEGGGTS
T ss_pred CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEEEec-CCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeCCCce
Confidence 457899998 45566666655889999998776554443 45668899999999977666542 134444443222
Q ss_pred ceeEEeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeeEEec--CCCeeEEEEecCCCEEEEEEc-CCeEE
Q 003236 631 YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC--QSGATQMRFQPRLGRILAAAI-ENYIS 707 (837)
Q Consensus 631 ~~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~--~~~i~sl~~sp~g~~llags~-dg~I~ 707 (837)
.....+. .......++++|++..++++-..++.|+.++...+........ ......++|+|++++|+++.. .+.|.
T Consensus 217 ~~~~~l~-~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d~~~~~I~ 295 (430)
T 3tc9_A 217 KVITELT-KGQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAYIVVVNQHYIL 295 (430)
T ss_dssp CSEEEEE-ECSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEE
T ss_pred eeeeeec-cCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEEEEEECCCCEEE
Confidence 1112222 2344678899995556776766788999999987765333333 234778999999997766664 57899
Q ss_pred EEECCC--CeE--EEEEcCC---------------CCCEE-EEEEc--------CCCCEEEEEe-CCeEEEEEcCCCCCc
Q 003236 708 ILDVET--QVC--RLKLQGH---------------KNQVH-SVCWN--------TSGEYLASVS-DELVRVWSIGSGSKG 758 (837)
Q Consensus 708 iwDl~s--~~~--~~~l~~h---------------~~~V~-sl~~s--------pdg~~Lasgs-Dg~I~IwDl~s~~~~ 758 (837)
.++... +.. +..+.+. -.... .++.. +++.++++-. .+.|+.++. .+
T Consensus 296 ~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D~~g~lyvaD~~n~~I~~i~~-~G--- 371 (430)
T 3tc9_A 296 RSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSDEYDFYFCDRENHCIRILTP-QG--- 371 (430)
T ss_dssp EEEEETTTTEECCCEEEEECTTCBCCBCEEGGGCBBSSEEEEEEEECGGGTTSSCCEEEEEEEGGGTEEEEECT-TS---
T ss_pred EEeCCcccccccceEEEeccCCCCCCCCCCCcceEeCCCcceEEEccccccccCCCCeEEEEECCCcEEEEECC-CC---
Confidence 987653 221 1112111 11233 45553 3355555444 668888873 33
Q ss_pred eeEEEeecC------------------CCceEEEEEeCCCCEEEEEEc-CCeEEEEECC
Q 003236 759 ECIHELSCT------------------GNKFHSCVFHPTFPSLLVIGC-YETLELWNMT 798 (837)
Q Consensus 759 ~~i~~~~~~------------------~~~I~sv~fspdg~~L~sgs~-dg~I~IwDl~ 798 (837)
. +..+.+. -.....+++++++..|+++.. ++.|+.++++
T Consensus 372 ~-v~~~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e 429 (430)
T 3tc9_A 372 R-VTTFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEERECFFIGDRENRRIRKIGYE 429 (430)
T ss_dssp E-EEEEEECCTTSSSSCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred c-EEEEEeCCCCCCCcccCCCchhhcEeCCCcEEEEECCCCEEEEEECCCCeEEEEccC
Confidence 2 2222211 124688999996555666654 4578887754
|
| >3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A | Back alignment and structure |
|---|
Probab=98.42 E-value=7.4e-05 Score=80.99 Aligned_cols=185 Identities=14% Similarity=0.194 Sum_probs=130.7
Q ss_pred CCCEEEEEECCCcEEEEeCCCCeEEEEeccCCCCeEEEEEcCC----CC---EEEEEe-C--CCeEEEEEcCCCCceeEE
Q 003236 566 DGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPS----LS---RLATSS-A--DRTVRVWDTENPDYSLRT 635 (837)
Q Consensus 566 dg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~I~~l~fspd----g~---~Latgs-~--Dg~I~IWDl~~~~~~~~~ 635 (837)
...+++....++-+.|||+ +++.+..+.. +.++.+...|+ ++ ++++.. . +++|++|++......+..
T Consensus 39 ~~s~ii~t~k~~gL~Vydl-~G~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~l~~ 115 (355)
T 3amr_A 39 QNSKLITTNKKSGLVVYSL-DGKMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQS 115 (355)
T ss_dssp GGCEEEEEETTTEEEEEET-TSCEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCCEEE
T ss_pred CccEEEEEcCCCCEEEEcC-CCcEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCceee
Confidence 4456666667788999999 8888888854 56777777763 22 223333 3 579999988532222444
Q ss_pred eec------cc-cceEEEEE--cCC-CCeEEEEEeCCCcEEEEEC-------CCCeeeeEEecCCCeeEEEEecCCCEEE
Q 003236 636 FTG------HS-TTVMSLDF--HPS-KEDLLCSCDNNSEIRYWSI-------NNGSCAGVFKCQSGATQMRFQPRLGRIL 698 (837)
Q Consensus 636 ~~~------h~-~~V~sl~f--spd-g~~llasgs~Dg~I~vwDl-------~t~~~i~~~~~~~~i~sl~~sp~g~~ll 698 (837)
+.. .. ..+..+|+ ++. +..+++....+|.+..|++ .+.+.++.+...+.+..+.+.+..+.|+
T Consensus 116 i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~lgsq~EgcvvDd~~g~Ly 195 (355)
T 3amr_A 116 MTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKMNSQTEGMAADDEYGRLY 195 (355)
T ss_dssp CSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEECSSCEEEEEEETTTTEEE
T ss_pred ccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecCCCCcceEEEcCCCCeEE
Confidence 421 12 56777887 664 4456777788899999998 2346788888889999999999999999
Q ss_pred EEEcCCeEEEEECC-----CCeEEEEEc-C-CCCCEEEEEE--cCCCC-EEEEEe--CCeEEEEEcC
Q 003236 699 AAAIENYISILDVE-----TQVCRLKLQ-G-HKNQVHSVCW--NTSGE-YLASVS--DELVRVWSIG 753 (837)
Q Consensus 699 ags~dg~I~iwDl~-----s~~~~~~l~-~-h~~~V~sl~~--spdg~-~Lasgs--Dg~I~IwDl~ 753 (837)
++-++..|..||.+ +.+.+..+. + ....+..|++ .++++ ||++++ ++.+.|||..
T Consensus 196 v~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~ 262 (355)
T 3amr_A 196 IAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQ 262 (355)
T ss_dssp EEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESS
T ss_pred EecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECC
Confidence 99999888888865 345565542 2 2347888888 45555 666666 7799999996
|
| >4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.41 E-value=6.7e-05 Score=84.74 Aligned_cols=233 Identities=14% Similarity=0.111 Sum_probs=139.3
Q ss_pred CeEEEEEcCC--CCEEEEEeCCCeEEEEEcCCCCceeEEeeccccceEEEEEcCCCCeEEEEEeCC---C-cEEEEECCC
Q 003236 599 WITDVRFSPS--LSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN---S-EIRYWSINN 672 (837)
Q Consensus 599 ~I~~l~fspd--g~~Latgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~sl~fspdg~~llasgs~D---g-~I~vwDl~t 672 (837)
....|+|+|+ ...|+.+...+.|+.+|..++. +..+........+++|++++. ++++.... . .+..++...
T Consensus 140 ~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~--v~~~~~~~~~P~giavd~dG~-lyVad~~~~~~~~gv~~~~~~~ 216 (433)
T 4hw6_A 140 NIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQY--VDIKTTNIGQCADVNFTLNGD-MVVVDDQSSDTNTGIYLFTRAS 216 (433)
T ss_dssp CCCEEEECTTTTTCEEEEECBTSCEEEEETTTTE--EEEECCCCSCEEEEEECTTCC-EEEEECCSCTTSEEEEEECGGG
T ss_pred CCceEEEccccCCCEEEEEeCCCCEEEEECCCCE--EEEeecCCCCccEEEECCCCC-EEEEcCCCCcccceEEEEECCC
Confidence 4678999984 4556666555899999997654 444444556689999999988 66554321 1 233333322
Q ss_pred Cee-eeEEecCCCeeEEEEecCCCEEEEEE-cCCeEEEEECCCCeEEEEE-cC-CCCCEEEEEEcCCCCEEEEEe--CCe
Q 003236 673 GSC-AGVFKCQSGATQMRFQPRLGRILAAA-IENYISILDVETQVCRLKL-QG-HKNQVHSVCWNTSGEYLASVS--DEL 746 (837)
Q Consensus 673 ~~~-i~~~~~~~~i~sl~~sp~g~~llags-~dg~I~iwDl~s~~~~~~l-~~-h~~~V~sl~~spdg~~Lasgs--Dg~ 746 (837)
+.. ...+........++++++.+.|+++. .++.|+.+|..++.....+ .. .......|+|+|++++|+.+. .+.
T Consensus 217 ~~~~~~~~~~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~~~~ 296 (433)
T 4hw6_A 217 GFTERLSLCNARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYNGKHC 296 (433)
T ss_dssp TTCCEEEEEECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEEETTTTE
T ss_pred CeeccccccccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEEeCCCCE
Confidence 111 11222234567788999445555554 5678999999877652222 21 223345799999999666665 678
Q ss_pred EEEEEcCC--CCCceeEEEeecC---------------CCceEEEEE---------eCCCCEEEEEEcCCeEEEEECCCC
Q 003236 747 VRVWSIGS--GSKGECIHELSCT---------------GNKFHSCVF---------HPTFPSLLVIGCYETLELWNMTEN 800 (837)
Q Consensus 747 I~IwDl~s--~~~~~~i~~~~~~---------------~~~I~sv~f---------spdg~~L~sgs~dg~I~IwDl~s~ 800 (837)
|+.+++.. +.. .....+.+. -.....+++ .+++..+++-...+.|+.++. ++
T Consensus 297 I~~~~~d~~~~~~-~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~~~-~G 374 (433)
T 4hw6_A 297 IYRVDYNRETGKL-AVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVLTP-EG 374 (433)
T ss_dssp EEEEEBCTTTCCB-CCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEEECT-TS
T ss_pred EEEEeCCCCCccc-CcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCEEEEECC-CC
Confidence 99988763 211 111111111 123566888 566654444445568999985 56
Q ss_pred cEEEeccC------------------CCCeeEEEEe-CCCCEEEEEECCCcEEEe
Q 003236 801 KTLTLSAH------------------DKLVSSLAAS-TVNGMVASASHDKCVKIW 836 (837)
Q Consensus 801 ~~~~l~~h------------------~~~V~sla~s-pdg~~LaSgs~DG~I~IW 836 (837)
....+.+. -.....|+++ +++.++++-...+.|+.+
T Consensus 375 ~v~t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i 429 (433)
T 4hw6_A 375 RVTTYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCDNHRVRKI 429 (433)
T ss_dssp EEEEEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEE
T ss_pred CEEEEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeCCCCEEEEE
Confidence 55544322 1237789999 566555555556677764
|
| >2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major} | Back alignment and structure |
|---|
Probab=98.39 E-value=3.6e-05 Score=93.28 Aligned_cols=192 Identities=10% Similarity=0.030 Sum_probs=115.2
Q ss_pred CeEEEEEc-CCCCEEEEEeC-C----CeEEEEEcCCC-CceeEEeeccccceEEEEEcCCCCeEEEEEeCC----CcEEE
Q 003236 599 WITDVRFS-PSLSRLATSSA-D----RTVRVWDTENP-DYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN----SEIRY 667 (837)
Q Consensus 599 ~I~~l~fs-pdg~~Latgs~-D----g~I~IWDl~~~-~~~~~~~~~h~~~V~sl~fspdg~~llasgs~D----g~I~v 667 (837)
.+...+|+ |||++|+.+.. + ..|+++|+.++ +.....+. .....++|+||++.++++...+ ..|++
T Consensus 175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~~---~~~~~~~WspDg~~l~y~~~d~~~~~~~v~~ 251 (751)
T 2xe4_A 175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKVS---GTNGEIVWGPDHTSLFYVTKDETLRENKVWR 251 (751)
T ss_dssp EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCCEE---EECSCCEECSSTTEEEEEEECTTCCEEEEEE
T ss_pred EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCcccc---CceeeEEEecCCCEEEEEEECCCCCCCEEEE
Confidence 67889999 99998886543 2 25999999987 52111111 1245789999998888776532 36888
Q ss_pred EECCCCee--eeEEec--CCCeeEEEEecCCCEEEEEEcC---CeEEEEECCCC--eE-EEEE-cCCCCCEEEEEEcCCC
Q 003236 668 WSINNGSC--AGVFKC--QSGATQMRFQPRLGRILAAAIE---NYISILDVETQ--VC-RLKL-QGHKNQVHSVCWNTSG 736 (837)
Q Consensus 668 wDl~t~~~--i~~~~~--~~~i~sl~~sp~g~~llags~d---g~I~iwDl~s~--~~-~~~l-~~h~~~V~sl~~spdg 736 (837)
+++.++.. ...+.. ......+.|+|++++|+....+ ..|+++|+.++ .. +..+ ........++.|+.++
T Consensus 252 ~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~s~~~~~g~ 331 (751)
T 2xe4_A 252 HVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPREKGVRYDVQMHGTS 331 (751)
T ss_dssp EETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCCTTCCEEEEEETTT
T ss_pred EECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEeecCCCCceEEEeeeeCC
Confidence 99987642 233322 2345678999999998877743 47889999875 22 1233 3344555666665444
Q ss_pred CEEEEEe-C--C--eEEEEEcCCCCCceeEEEeecCCC--ceEEEEEeCCCCEEEE-EEcCC--eEEEEEC
Q 003236 737 EYLASVS-D--E--LVRVWSIGSGSKGECIHELSCTGN--KFHSCVFHPTFPSLLV-IGCYE--TLELWNM 797 (837)
Q Consensus 737 ~~Lasgs-D--g--~I~IwDl~s~~~~~~i~~~~~~~~--~I~sv~fspdg~~L~s-gs~dg--~I~IwDl 797 (837)
.+++.+. + + .|.++|+.+......+ +..+.. .+..+.+. +..|++ ...++ .|+++|+
T Consensus 332 ~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~--li~~~~~~~l~~~~~~--~~~lv~~~~~~g~~~l~~~dl 398 (751)
T 2xe4_A 332 HLVILTNEGGAVNHKLLIAPRGQPSDWSHV--LVDHSEDVFMESIAVR--SNYLVVAGRRAGLTRIWTMMA 398 (751)
T ss_dssp EEEEEECTTTCTTCEEEEEETTSTTCCCCE--EECCCSSEEEEEEEEC--SSEEEEEEEETTEEEEEEEEC
T ss_pred EEEEEeCCCCCCCcEEEEEcCCCcccceee--EECCCCCcEEEEEEEE--CCEEEEEEEeCCEEEEEEEec
Confidence 4444444 4 2 6777777642111110 122223 34444444 455554 45556 5777786
|
| >3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L | Back alignment and structure |
|---|
Probab=98.38 E-value=0.00038 Score=77.60 Aligned_cols=219 Identities=9% Similarity=0.013 Sum_probs=143.4
Q ss_pred EEEEEeCCCeEEEEEcCCCCceeEEeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCC----eeeeEEe-cCCCe
Q 003236 611 RLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNG----SCAGVFK-CQSGA 685 (837)
Q Consensus 611 ~Latgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~----~~i~~~~-~~~~i 685 (837)
+|+.+ ....|+..++..... ..+......+..++|++.+..++++-...+.|+.+++... .....+. .....
T Consensus 85 ~ll~~-~~~~I~~i~l~~~~~--~~~~~~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p 161 (400)
T 3p5b_L 85 YLFFT-NRHEVRKMTLDRSEY--TSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAP 161 (400)
T ss_dssp EEEEE-ETTEEEEECTTSCSC--EEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCE
T ss_pred eeEEe-ccceeEEEccCCcce--eEeccccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCc
Confidence 44444 346889999886543 2333345678899999987878877777889999998752 2222332 23457
Q ss_pred eEEEEecCCCEEEEEEc-CCeEEEEECCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEe---CCeEEEEEcCCCCCceeE
Q 003236 686 TQMRFQPRLGRILAAAI-ENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS---DELVRVWSIGSGSKGECI 761 (837)
Q Consensus 686 ~sl~~sp~g~~llags~-dg~I~iwDl~s~~~~~~l~~h~~~V~sl~~spdg~~Lasgs---Dg~I~IwDl~s~~~~~~i 761 (837)
..+++.+.++.|+.+.. .+.|.+++++.......+...-.....|+++|.+.+|+.+. .+.|...++.... ..
T Consensus 162 ~glavD~~~~~lY~~d~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~---~~ 238 (400)
T 3p5b_L 162 DGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVD---IY 238 (400)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEECTTTCSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCS---CE
T ss_pred ccEEEEecCCceEEEECCCCeEEEEeCCCCceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCc---cE
Confidence 78999987677776664 57999999987655555554455689999999776666655 3678888886542 11
Q ss_pred EEeecCCCceEEEEEeCCCCEEEEEEcC-CeEEEEECCCCcEEEec---cCCCCeeEEEEeCCCCEEEEEECCCcEEEe
Q 003236 762 HELSCTGNKFHSCVFHPTFPSLLVIGCY-ETLELWNMTENKTLTLS---AHDKLVSSLAASTVNGMVASASHDKCVKIW 836 (837)
Q Consensus 762 ~~~~~~~~~I~sv~fspdg~~L~sgs~d-g~I~IwDl~s~~~~~l~---~h~~~V~sla~spdg~~LaSgs~DG~I~IW 836 (837)
..+...-.....+++++++..|+++... +.|..+|+.......+. .......+|++. .+.++++-...+.|..+
T Consensus 239 ~~~~~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~l~~P~gl~v~-~~~lywtd~~~~~V~~~ 316 (400)
T 3p5b_L 239 SLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSA 316 (400)
T ss_dssp EEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCCEEEEECSSTTSSEEEEEEE-TTEEEEEESSSCSEEEE
T ss_pred EEEECCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCccEEEEeCCCCCCCCEEEEEe-CCEEEEecCCCCeEEEE
Confidence 2222233567899999988888888764 58999999765544332 223456677773 33444444445566544
|
| >3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B | Back alignment and structure |
|---|
Probab=98.38 E-value=0.00027 Score=76.25 Aligned_cols=215 Identities=9% Similarity=0.020 Sum_probs=139.2
Q ss_pred CCeEEEEEcCCCCceeEEeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeee-eEEe-cCCCeeEEEEecCCC
Q 003236 618 DRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCA-GVFK-CQSGATQMRFQPRLG 695 (837)
Q Consensus 618 Dg~I~IWDl~~~~~~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i-~~~~-~~~~i~sl~~sp~g~ 695 (837)
...|+.++++...............+..++|++.+..++++-...+.|..+++..+... ..+. .-.....+++.+.++
T Consensus 12 ~~~I~~i~l~~~~~~~~~~~~~~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~glavd~~~g 91 (318)
T 3sov_A 12 RRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGE 91 (318)
T ss_dssp EEEEEEEETTCTTSCCEEEEEEEEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCEEEEETTTT
T ss_pred cCeEEEEECCCCceEEEEEecCCCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccEEEEEcCCC
Confidence 56799999987542222222233457789999977778877777889999999866422 1222 224577899998777
Q ss_pred EEEEEEc-CCeEEEEECCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEe---CCeEEEEEcCCCCCceeEEEeecCCCce
Q 003236 696 RILAAAI-ENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS---DELVRVWSIGSGSKGECIHELSCTGNKF 771 (837)
Q Consensus 696 ~llags~-dg~I~iwDl~s~~~~~~l~~h~~~V~sl~~spdg~~Lasgs---Dg~I~IwDl~s~~~~~~i~~~~~~~~~I 771 (837)
.|+.+.. .+.|.++++........+.........++++|.+.+|+.+. .+.|..+++..... .. .....-...
T Consensus 92 ~ly~~d~~~~~I~~~~~dG~~~~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~-~~--~~~~~l~~P 168 (318)
T 3sov_A 92 KLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSR-FI--IINSEIYWP 168 (318)
T ss_dssp EEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSC-EE--EECSSCSCE
T ss_pred eEEEEECCCCEEEEEECCCCcEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCe-EE--EEECCCCCc
Confidence 7776654 57999999876543333434556788999999766666555 35788888764321 11 122223456
Q ss_pred EEEEEeCCCCEEEEEEc-CCeEEEEECCCCcEEEe-ccCCCCeeEEEEeCCCCEEEEEECCCcEEEe
Q 003236 772 HSCVFHPTFPSLLVIGC-YETLELWNMTENKTLTL-SAHDKLVSSLAASTVNGMVASASHDKCVKIW 836 (837)
Q Consensus 772 ~sv~fspdg~~L~sgs~-dg~I~IwDl~s~~~~~l-~~h~~~V~sla~spdg~~LaSgs~DG~I~IW 836 (837)
..+++++++..|+.+.. .+.|..+|+.......+ .........+++.. +.++++-...+.|..+
T Consensus 169 nglavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~glav~~-~~lywtd~~~~~V~~~ 234 (318)
T 3sov_A 169 NGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFE-DILYWTDWSTHSILAC 234 (318)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSCCSCEEEEEEET-TEEEEEETTTTEEEEE
T ss_pred cEEEEeccCCEEEEEECCCCEEEEEcCCCCceEEEecCCCCCceEEEEeC-CEEEEEecCCCeEEEE
Confidence 89999998888888776 45899999876544333 23445667788753 3344444344555543
|
| >3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.37 E-value=0.00089 Score=69.75 Aligned_cols=201 Identities=12% Similarity=0.096 Sum_probs=136.1
Q ss_pred EEecCCCCCeEEEEEcCCCC-EEEEEECCCcEEEEeCCCCeEEEEecc-CCCCeEEEEEcCCCCEEEEEeCCCeEEEEEc
Q 003236 549 QLIPASTSKVESCHFSPDGK-LLATGGHDKKAVLWCTESFTVKSTLEE-HTQWITDVRFSPSLSRLATSSADRTVRVWDT 626 (837)
Q Consensus 549 ~~l~~H~~~V~sl~fSpdg~-~Lasgs~Dg~I~VWd~~t~~~~~~l~~-h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl 626 (837)
+.+.+-.+.+..++|+|++. ++++...++.|...|.. ++.+..+.- -......|++.+++.++++.-.++.+.++++
T Consensus 20 ~~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v 98 (255)
T 3qqz_A 20 KEIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVISL 98 (255)
T ss_dssp EECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEEEEE
T ss_pred eECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEEEEc
Confidence 56777777899999999766 55567788899999988 788777632 2256888999988887777667789999998
Q ss_pred CCCCc--eeEEee------ccccceEEEEEcCCCCeEEEEEeCCC-cEEEEEC-CCCeeeeEEe--------cCCCeeEE
Q 003236 627 ENPDY--SLRTFT------GHSTTVMSLDFHPSKEDLLCSCDNNS-EIRYWSI-NNGSCAGVFK--------CQSGATQM 688 (837)
Q Consensus 627 ~~~~~--~~~~~~------~h~~~V~sl~fspdg~~llasgs~Dg-~I~vwDl-~t~~~i~~~~--------~~~~i~sl 688 (837)
..... .+.... ........|+|+|.+..++++...+. .|+.|+- .....+..+. .-..+..+
T Consensus 99 ~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l 178 (255)
T 3qqz_A 99 TPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGA 178 (255)
T ss_dssp CTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEE
T ss_pred CCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCceeE
Confidence 76542 112221 23455689999999888887666554 5555651 1111122221 12357899
Q ss_pred EEecCCCEEEEEEcC-CeEEEEECCCCeEEEEEcCCC---------CCEEEEEEcCCCCEEEEEeCCeEEEEE
Q 003236 689 RFQPRLGRILAAAIE-NYISILDVETQVCRLKLQGHK---------NQVHSVCWNTSGEYLASVSDELVRVWS 751 (837)
Q Consensus 689 ~~sp~g~~llags~d-g~I~iwDl~s~~~~~~l~~h~---------~~V~sl~~spdg~~LasgsDg~I~IwD 751 (837)
+++|..+.+++.+.+ ..|.++|.... .+..+.-.. .....|+|+++|++++++..+.+++|.
T Consensus 179 ~~dp~tg~lliLS~~s~~L~~~d~~g~-~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~lyIvsE~n~~y~f~ 250 (255)
T 3qqz_A 179 EFNQQKNTLLVLSHESRALQEVTLVGE-VIGEMSLTKGSRGLSHNIKQAEGVAMDASGNIYIVSEPNRFYRFT 250 (255)
T ss_dssp EEETTTTEEEEEETTTTEEEEECTTCC-EEEEEECSTTGGGCSSCCCSEEEEEECTTCCEEEEETTTEEEEEE
T ss_pred EEcCCCCeEEEEECCCCeEEEEcCCCC-EEEEEEcCCccCCcccccCCCCeeEECCCCCEEEEcCCceEEEEE
Confidence 999988887777664 68888997744 444433221 256899999999866664455666664
|
| >3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.36 E-value=0.00037 Score=84.38 Aligned_cols=239 Identities=8% Similarity=-0.037 Sum_probs=153.6
Q ss_pred EEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEeccCCCCeEEEEEcCCCCEEE-EEeCCCeEEEEEcCCCC---ceeE
Q 003236 559 ESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLA-TSSADRTVRVWDTENPD---YSLR 634 (837)
Q Consensus 559 ~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~I~~l~fspdg~~La-tgs~Dg~I~IWDl~~~~---~~~~ 634 (837)
+|.+..+.. +|+.+ ....|+..++........+. ....+..|+|++....|+ +-...+.|+.+++.... ....
T Consensus 388 ~C~~~~~~p-~Ll~a-n~~~Ir~i~l~~~~~~~l~~-~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~ 464 (791)
T 3m0c_C 388 ACKAVGSIA-YLFFT-NRHEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDT 464 (791)
T ss_dssp CCEETTSCC-EEEEE-CBSSEEEECTTSCCCEEEEC-SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEE
T ss_pred eeeeccccc-ccccc-cccceeEeeccCCcceeeec-CCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeE
Confidence 344443322 44444 34578888887665544443 445688999998555555 44456789999987531 1122
Q ss_pred EeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeeEEe-cCCCeeEEEEecCCCEEEEEEcC--CeEEEEEC
Q 003236 635 TFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK-CQSGATQMRFQPRLGRILAAAIE--NYISILDV 711 (837)
Q Consensus 635 ~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~-~~~~i~sl~~sp~g~~llags~d--g~I~iwDl 711 (837)
.+.........|++.+.+..|+++-...+.|.+.++........+. .......|++.|..++|+.+... +.|.+.++
T Consensus 465 vi~~~l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~ 544 (791)
T 3m0c_C 465 VISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGL 544 (791)
T ss_dssp EECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEET
T ss_pred EEecCCCCcceeeeeecCCcEEEEecCCCeEEEEeCCCCeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEec
Confidence 3332445677899998888888888888999999998554443333 23458899999988888887743 68999998
Q ss_pred CCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEe--CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcC
Q 003236 712 ETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS--DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCY 789 (837)
Q Consensus 712 ~s~~~~~~l~~h~~~V~sl~~spdg~~Lasgs--Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fspdg~~L~sgs~d 789 (837)
........+...-.....|++++.+..|+.+. .+.|.++++..... ..+......-.....+++. +.+|+++...
T Consensus 545 dG~~~~~lv~~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~~-~~v~~~~~~l~~P~glav~--~~~lYwtD~~ 621 (791)
T 3m0c_C 545 NGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNR-KTILEDEKRLAHPFSLAVF--EDKVFWTDII 621 (791)
T ss_dssp TSCCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEEECTTTTSSEEEEEEE--TTEEEEEETT
T ss_pred CCCceEEEEeCCCCCceEEEEecCCCeEEEEeCCCCcEEEEecCCCce-EEEecCCCccCCCCEEEEe--CCEEEEEECC
Confidence 76555444544456789999998877777776 66899999865432 2222111112234556654 3467766654
Q ss_pred -CeEEEEECCCCcEE
Q 003236 790 -ETLELWNMTENKTL 803 (837)
Q Consensus 790 -g~I~IwDl~s~~~~ 803 (837)
+.|...|..+++.+
T Consensus 622 ~~~I~~~dk~tG~~~ 636 (791)
T 3m0c_C 622 NEAIFSANRLTGSDV 636 (791)
T ss_dssp TTEEEEEETTTCCCC
T ss_pred CCEEEEEeCCCCcce
Confidence 58888887666543
|
| >4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.28 E-value=0.00022 Score=80.44 Aligned_cols=235 Identities=10% Similarity=0.058 Sum_probs=141.9
Q ss_pred CCeEEEEEcCC--CCEEEEEECCCcEEEEeCCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCC-----eEEEEEcCC
Q 003236 556 SKVESCHFSPD--GKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADR-----TVRVWDTEN 628 (837)
Q Consensus 556 ~~V~sl~fSpd--g~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg-----~I~IWDl~~ 628 (837)
.....|+|+|+ +..|+++...+.|+.+|..++....... ......+|+|+++++ |+++...+ .+..++...
T Consensus 139 ~~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~~~~-~~~~P~giavd~dG~-lyVad~~~~~~~~gv~~~~~~~ 216 (433)
T 4hw6_A 139 DNIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDIKTT-NIGQCADVNFTLNGD-MVVVDDQSSDTNTGIYLFTRAS 216 (433)
T ss_dssp SCCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEEECC-CCSCEEEEEECTTCC-EEEEECCSCTTSEEEEEECGGG
T ss_pred CCCceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEEeec-CCCCccEEEECCCCC-EEEEcCCCCcccceEEEEECCC
Confidence 34568999985 4455555544899999998877665543 455689999999999 55544321 233344332
Q ss_pred CCceeEEeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeeE-EecC--CCeeEEEEecCCCEEEEEEc-CC
Q 003236 629 PDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGV-FKCQ--SGATQMRFQPRLGRILAAAI-EN 704 (837)
Q Consensus 629 ~~~~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~-~~~~--~~i~sl~~sp~g~~llags~-dg 704 (837)
.......+. .-.....++++|++..++++-..++.|+.+|..++..... +... .....++|+|++++|+++.. .+
T Consensus 217 ~~~~~~~~~-~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~~~ 295 (433)
T 4hw6_A 217 GFTERLSLC-NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYNGKH 295 (433)
T ss_dssp TTCCEEEEE-ECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEEETTTT
T ss_pred Ceecccccc-ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEEeCCCC
Confidence 211111222 2344677889995455666666678899999987776332 2221 22346999999997777665 57
Q ss_pred eEEEEECC--CCeE--EEEEcCC---------------CCCEEEEEE---------cCCCCEEEEEe-CCeEEEEEcCCC
Q 003236 705 YISILDVE--TQVC--RLKLQGH---------------KNQVHSVCW---------NTSGEYLASVS-DELVRVWSIGSG 755 (837)
Q Consensus 705 ~I~iwDl~--s~~~--~~~l~~h---------------~~~V~sl~~---------spdg~~Lasgs-Dg~I~IwDl~s~ 755 (837)
.|..++.. ++.. ...+.+. -.....+++ .+++.++++-. .+.|++++. ++
T Consensus 296 ~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~~~-~G 374 (433)
T 4hw6_A 296 CIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVLTP-EG 374 (433)
T ss_dssp EEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEEECT-TS
T ss_pred EEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCEEEEECC-CC
Confidence 89998865 2211 1112111 124677999 66777666655 678998874 33
Q ss_pred CCceeEEEeecC------------------CCceEEEEEeCCCCEEEEEEc-CCeEEEEECC
Q 003236 756 SKGECIHELSCT------------------GNKFHSCVFHPTFPSLLVIGC-YETLELWNMT 798 (837)
Q Consensus 756 ~~~~~i~~~~~~------------------~~~I~sv~fspdg~~L~sgs~-dg~I~IwDl~ 798 (837)
.+..+.+. -.....++++|....|+++.. ++.|+.++++
T Consensus 375 ----~v~t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e 432 (433)
T 4hw6_A 375 ----RVTTYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCDNHRVRKIAPE 432 (433)
T ss_dssp ----EEEEEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred ----CEEEEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeCCCCEEEEEecC
Confidence 22222211 123678888844444555544 5578877754
|
| >3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=98.21 E-value=0.00035 Score=79.60 Aligned_cols=233 Identities=12% Similarity=0.093 Sum_probs=138.6
Q ss_pred CeEEEEEcC-CCCEEEEEeC-CCeEEEEEcCCCCceeEEeecc----ccceEEEEE-------cCCCCeEEEEEeCCC--
Q 003236 599 WITDVRFSP-SLSRLATSSA-DRTVRVWDTENPDYSLRTFTGH----STTVMSLDF-------HPSKEDLLCSCDNNS-- 663 (837)
Q Consensus 599 ~I~~l~fsp-dg~~Latgs~-Dg~I~IWDl~~~~~~~~~~~~h----~~~V~sl~f-------spdg~~llasgs~Dg-- 663 (837)
....|+|+| +...|+++.. .+.|++.|+.++. +..+..- ......|+| ++++..++++...++
T Consensus 140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~--v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~ 217 (496)
T 3kya_A 140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRM--LSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKG 217 (496)
T ss_dssp SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTE--EEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTG
T ss_pred CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCE--EEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCc
Confidence 467899998 3455555544 4678888888654 3333221 235889999 999887776665542
Q ss_pred ----cEEEEECCC-Ceee-----eEEecCCCeeEEEEecCCCEEEEEE-cCCeEEEEECC-------CCeE---------
Q 003236 664 ----EIRYWSINN-GSCA-----GVFKCQSGATQMRFQPRLGRILAAA-IENYISILDVE-------TQVC--------- 716 (837)
Q Consensus 664 ----~I~vwDl~t-~~~i-----~~~~~~~~i~sl~~sp~g~~llags-~dg~I~iwDl~-------s~~~--------- 716 (837)
.|.+++... +... ..+........++++|+++.|+++. .++.|..||+. ++..
T Consensus 218 ~~~~~V~~i~r~~~G~~~~~~~~~~v~~~~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~ 297 (496)
T 3kya_A 218 DESPSVYIIKRNADGTFDDRSDIQLIAAYKQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNP 297 (496)
T ss_dssp GGEEEEEEEECCTTSCCSTTSCEEEEEEESCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCT
T ss_pred ccCceEEEEecCCCCceeecccceeeccCCCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeecccccccc
Confidence 266776443 2221 2222234566788999767776666 45789999987 4432
Q ss_pred -----EEEEcCCCCCEEEEEEcCCCCEEEEEe--CCeEEEEEcCCCCCcee--EEEeecC---C------------CceE
Q 003236 717 -----RLKLQGHKNQVHSVCWNTSGEYLASVS--DELVRVWSIGSGSKGEC--IHELSCT---G------------NKFH 772 (837)
Q Consensus 717 -----~~~l~~h~~~V~sl~~spdg~~Lasgs--Dg~I~IwDl~s~~~~~~--i~~~~~~---~------------~~I~ 772 (837)
+..+ +.......|+|+|+|++|+.+. ...|+.++...... .. ...+.+. . ....
T Consensus 298 g~~~~l~~~-~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~-~~~~~~~~aG~~g~~G~~DG~~~~a~f~~P~ 375 (496)
T 3kya_A 298 NTFKQLFTI-ADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKK-EFITPYNFVGGYKQSGYRDDVGTEARMNNPC 375 (496)
T ss_dssp TTEEEEEEC-SSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTT-EECCCEEEEEBTTBCCCBCCBGGGCBCSSEE
T ss_pred cccceeEec-CCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCcc-eecccEEecCCCCCCcccCCcccccccCCCe
Confidence 2222 2334568999999999766665 66888876643211 10 0111111 0 1233
Q ss_pred -EEEEe-------CCCCEEEEEEcCCeEEEEECCCCcEEEeccC------------------------CCCeeEEEEeCC
Q 003236 773 -SCVFH-------PTFPSLLVIGCYETLELWNMTENKTLTLSAH------------------------DKLVSSLAASTV 820 (837)
Q Consensus 773 -sv~fs-------pdg~~L~sgs~dg~I~IwDl~s~~~~~l~~h------------------------~~~V~sla~spd 820 (837)
.++.. .++.++++=..+++|+.++ .++.+.++.+. -.....|+++++
T Consensus 376 ~gv~vd~~~~~~~~~g~lyVaD~~N~rIr~i~-~~G~v~TiaG~g~~~~~~~~~~~G~~dG~~~~~a~f~~P~gIavd~~ 454 (496)
T 3kya_A 376 QGVFVKNPDYTGEEEYDFYFVDRLNFCVRKVT-PEGIVSTYAGRGASTSLADGNQWGTDDGDLREVARFRDVSGLVYDDV 454 (496)
T ss_dssp EEEEEECTTCCSSCCEEEEEEEGGGTEEEEEC-TTCBEEEEEESCTTHHHHHSCSCCCCCEETTTTCCCSSEEEEEEETT
T ss_pred EEEEEccccccccCCCeEEEEECCCCEEEEEe-CCCCEEEEecccccccccCccccccCCCCchhhhhcCCCcEEEEECC
Confidence 45554 4454444444566999999 56666554322 123678999997
Q ss_pred -CCEEEEEECCCcEEEe
Q 003236 821 -NGMVASASHDKCVKIW 836 (837)
Q Consensus 821 -g~~LaSgs~DG~I~IW 836 (837)
+.++++=.....|+.+
T Consensus 455 ~g~lyVaD~~N~rIrki 471 (496)
T 3kya_A 455 KEMFYVHDQVGHTIRTI 471 (496)
T ss_dssp TTEEEEEETTTTEEEEE
T ss_pred CCEEEEEeCCCCEEEEE
Confidence 5555554456677765
|
| >1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A | Back alignment and structure |
|---|
Probab=98.19 E-value=5.9e-05 Score=89.86 Aligned_cols=229 Identities=7% Similarity=-0.031 Sum_probs=130.1
Q ss_pred EEEEEcC-CCCEEEEEeCCC-----------eEEEEEcCCCCceeE-Ee-eccccceEEEEEcCCCCeEEEEEe-CCCcE
Q 003236 601 TDVRFSP-SLSRLATSSADR-----------TVRVWDTENPDYSLR-TF-TGHSTTVMSLDFHPSKEDLLCSCD-NNSEI 665 (837)
Q Consensus 601 ~~l~fsp-dg~~Latgs~Dg-----------~I~IWDl~~~~~~~~-~~-~~h~~~V~sl~fspdg~~llasgs-~Dg~I 665 (837)
..+++.+ ++++++.|+.+. .+.+||..++..... .. ..+.....++++..++. +++.|+ .+..+
T Consensus 189 ~~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~-lyv~GG~~~~~v 267 (656)
T 1k3i_A 189 AAAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQ-IVVTGGNDAKKT 267 (656)
T ss_dssp SEEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSC-EEEECSSSTTCE
T ss_pred eeEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCCCCC-EEEeCCCCCCce
Confidence 3566777 888888887643 688999988764221 22 12333444577777766 555665 55689
Q ss_pred EEEECCCCeeeeEEec--CCCeeEEEEecCCCEEEEEE-cC-----CeEEEEECCCCeEEEEE----cCCCCCEEEEEEc
Q 003236 666 RYWSINNGSCAGVFKC--QSGATQMRFQPRLGRILAAA-IE-----NYISILDVETQVCRLKL----QGHKNQVHSVCWN 733 (837)
Q Consensus 666 ~vwDl~t~~~i~~~~~--~~~i~sl~~sp~g~~llags-~d-----g~I~iwDl~s~~~~~~l----~~h~~~V~sl~~s 733 (837)
.+||..+.+....-.. ...-.++++.++++.+++|+ .+ ..+.+||..+.+-...- ......-....+.
T Consensus 268 ~~yd~~t~~W~~~~~~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W~~~~~~~~~p~~~~~~~~~~~ 347 (656)
T 1k3i_A 268 SLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLYR 347 (656)
T ss_dssp EEEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCTTGGGT
T ss_pred EEecCcCCceeECCCCCccccccceEEecCCeEEEEeCcccCCcccccceEeCCCCCcceeCCCccccccccccccceee
Confidence 9999987764433222 12234566667888888888 34 57999999887543320 0000000001122
Q ss_pred CCCCEEEEEe-C---------CeEEEEEcCCCCCceeEEEeec------CCCceEEEEEeC-CCCEEEEEEcCC------
Q 003236 734 TSGEYLASVS-D---------ELVRVWSIGSGSKGECIHELSC------TGNKFHSCVFHP-TFPSLLVIGCYE------ 790 (837)
Q Consensus 734 pdg~~Lasgs-D---------g~I~IwDl~s~~~~~~i~~~~~------~~~~I~sv~fsp-dg~~L~sgs~dg------ 790 (837)
.++..++.+. + ..+..||..+..-......... ....-.++.|.. +++.+++|+.++
T Consensus 348 ~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~v~GG~~~~~~~~~ 427 (656)
T 1k3i_A 348 SDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDA 427 (656)
T ss_dssp TTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSSSBC
T ss_pred cCCceEEEECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCCCceEeccCCCCeEEEEeCCCCCCCCCc
Confidence 3344333333 3 4678888877632111111111 011234445544 566666666432
Q ss_pred -----eEEEEECCCCcEEEec---cCCCCe-eEEEEeCCCCEEEEEECC
Q 003236 791 -----TLELWNMTENKTLTLS---AHDKLV-SSLAASTVNGMVASASHD 830 (837)
Q Consensus 791 -----~I~IwDl~s~~~~~l~---~h~~~V-~sla~spdg~~LaSgs~D 830 (837)
.|.+||..+.....+. .+.... .++++.+++++++.|+.+
T Consensus 428 ~~~~~~v~~yd~~~~~W~~~~~~~mp~~R~~~~~~~l~~g~i~v~GG~~ 476 (656)
T 1k3i_A 428 TTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQR 476 (656)
T ss_dssp CCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBS
T ss_pred CCcceEEEcCCCCCCCeeEEccCCCCCCcccCCeEECCCCCEEEECCcc
Confidence 6888998887766543 222222 344667899999999865
|
| >3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.13 E-value=0.0018 Score=78.43 Aligned_cols=216 Identities=9% Similarity=0.029 Sum_probs=140.0
Q ss_pred EEEEEeCCCeEEEEEcCCCCceeEEeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCC----eeeeEEe-cCCCe
Q 003236 611 RLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNG----SCAGVFK-CQSGA 685 (837)
Q Consensus 611 ~Latgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~----~~i~~~~-~~~~i 685 (837)
+|+.+ ....|+..++..... ..+......+..|+|++.+..++++-...+.|+.+++... .....+. .....
T Consensus 397 ~Ll~a-n~~~Ir~i~l~~~~~--~~l~~~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P 473 (791)
T 3m0c_C 397 YLFFT-NRHEVRKMTLDRSEY--TSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAP 473 (791)
T ss_dssp EEEEE-CBSSEEEECTTSCCC--EEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCC
T ss_pred ccccc-cccceeEeeccCCcc--eeeecCCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCc
Confidence 34433 345688888876543 3333345668899999977778878777889999998753 2222332 23457
Q ss_pred eEEEEecCCCEEEEEEc-CCeEEEEECCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEe--C-CeEEEEEcCCCCCceeE
Q 003236 686 TQMRFQPRLGRILAAAI-ENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS--D-ELVRVWSIGSGSKGECI 761 (837)
Q Consensus 686 ~sl~~sp~g~~llags~-dg~I~iwDl~s~~~~~~l~~h~~~V~sl~~spdg~~Lasgs--D-g~I~IwDl~s~~~~~~i 761 (837)
..|++.+.++.|+.+.. .+.|.++++........+.........|+++|.+.+|+.+. . +.|.+.++... ...
T Consensus 474 ~GLAvD~~~~~LY~tD~~~~~I~v~~ldG~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~---~~~ 550 (791)
T 3m0c_C 474 DGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGV---DIY 550 (791)
T ss_dssp CEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSC---CEE
T ss_pred ceeeeeecCCcEEEEecCCCeEEEEeCCCCeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCC---ceE
Confidence 78999988877777765 57999999987655444444556789999999866666655 3 67888888654 222
Q ss_pred EEeecCCCceEEEEEeCCCCEEEEEEcC-CeEEEEECCCCcEEEecc---CCCCeeEEEEeCCCCEEEEEE-CCCcEE
Q 003236 762 HELSCTGNKFHSCVFHPTFPSLLVIGCY-ETLELWNMTENKTLTLSA---HDKLVSSLAASTVNGMVASAS-HDKCVK 834 (837)
Q Consensus 762 ~~~~~~~~~I~sv~fspdg~~L~sgs~d-g~I~IwDl~s~~~~~l~~---h~~~V~sla~spdg~~LaSgs-~DG~I~ 834 (837)
..+...-.....|++++....|+++... +.|..+++.......+.. .-....+|++. +..|+.+. ..+.|.
T Consensus 551 ~lv~~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~~~~v~~~~~~l~~P~glav~--~~~lYwtD~~~~~I~ 626 (791)
T 3m0c_C 551 SLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF--EDKVFWTDIINEAIF 626 (791)
T ss_dssp EEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE--TTEEEEEETTTTEEE
T ss_pred EEEeCCCCCceEEEEecCCCeEEEEeCCCCcEEEEecCCCceEEEecCCCccCCCCEEEEe--CCEEEEEECCCCEEE
Confidence 2223334568899999888888888654 489999997665543322 22345566664 33444444 334444
|
| >4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A* | Back alignment and structure |
|---|
Probab=98.10 E-value=0.0023 Score=75.64 Aligned_cols=219 Identities=9% Similarity=0.006 Sum_probs=145.2
Q ss_pred EEEEEeCCCeEEEEEcCCCCceeEEeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeeEEecC-CCeeEEE
Q 003236 611 RLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ-SGATQMR 689 (837)
Q Consensus 611 ~Latgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~~-~~i~sl~ 689 (837)
+|+.+ ....|+..++++...........-..+..|+|++.+..++++-..++.|+.+++........+... .....++
T Consensus 8 ~Ll~s-~~~~I~~i~l~~~~~~~~~~~~~~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~~g~~~P~GlA 86 (628)
T 4a0p_A 8 FLLFS-RRADIRRISLETNNNNVAIPLTGVKEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVEFGLDYPEGMA 86 (628)
T ss_dssp EEEEE-ETTEEEEEESSCTTCEEECCCCSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEE
T ss_pred EEEEE-eCCcEEEEECCCCCcceEEEcCCCCceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEEeCCCCCcceEE
Confidence 44444 567899999987553222222233568899999988888888778899999999865444444332 3577899
Q ss_pred EecCCCEEEEEEc-CCeEEEEECCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEe---CCeEEEEEcCCCCCceeEEEee
Q 003236 690 FQPRLGRILAAAI-ENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS---DELVRVWSIGSGSKGECIHELS 765 (837)
Q Consensus 690 ~sp~g~~llags~-dg~I~iwDl~s~~~~~~l~~h~~~V~sl~~spdg~~Lasgs---Dg~I~IwDl~s~~~~~~i~~~~ 765 (837)
+.+.++.|+.+.. .+.|.+.++........+...-.....|+++|...+|+.+. .+.|...++..... ..+ .
T Consensus 87 vD~~~~~LY~tD~~~~~I~v~~~dG~~~~~l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~-~~l---~ 162 (628)
T 4a0p_A 87 VDWLGKNLYWADTGTNRIEVSKLDGQHRQVLVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSER-TTL---V 162 (628)
T ss_dssp EETTTTEEEEEETTTTEEEEEETTSTTCEEEECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSC-EEE---E
T ss_pred EEeCCCEEEEEECCCCEEEEEecCCCcEEEEEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCce-EEE---E
Confidence 9988787777765 57899999876543333334445678999999665665555 45788888765432 222 2
Q ss_pred cCCCceEEEEEeCCCCEEEEEEcC-CeEEEEECCCCcEEEeccCCCCeeEEEEeCCCCEEEEEECCCcEEE
Q 003236 766 CTGNKFHSCVFHPTFPSLLVIGCY-ETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKI 835 (837)
Q Consensus 766 ~~~~~I~sv~fspdg~~L~sgs~d-g~I~IwDl~s~~~~~l~~h~~~V~sla~spdg~~LaSgs~DG~I~I 835 (837)
........+++++++..|+.+... +.|..+|+.......+........+|++.. +.++++-...+.|..
T Consensus 163 ~~~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~~~v~~~~l~~P~glav~~-~~ly~tD~~~~~I~~ 232 (628)
T 4a0p_A 163 PNVGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNREVIADDLPHPFGLTQYQ-DYIYWTDWSRRSIER 232 (628)
T ss_dssp CSCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECCSCEEEEEEET-TEEEEEETTTTEEEE
T ss_pred CCCCCcceEEEccccCEEEEEECCCCEEEEEcCCCCceEEeeccCCCceEEEEEC-CEEEEecCCCCEEEE
Confidence 245667899999998888888764 589999997655443333444566788764 333334334555554
|
| >3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=98.09 E-value=0.00081 Score=76.64 Aligned_cols=241 Identities=14% Similarity=0.133 Sum_probs=145.5
Q ss_pred CeEEEEEcC-CCCEE-EEEECCCcEEEEeCCCCeEEEEeccC---CCCeEEEEE-------cCCCCEEEEEeCCC-----
Q 003236 557 KVESCHFSP-DGKLL-ATGGHDKKAVLWCTESFTVKSTLEEH---TQWITDVRF-------SPSLSRLATSSADR----- 619 (837)
Q Consensus 557 ~V~sl~fSp-dg~~L-asgs~Dg~I~VWd~~t~~~~~~l~~h---~~~I~~l~f-------spdg~~Latgs~Dg----- 619 (837)
....|+|+| ++..| ++-...+.|++.|.+++.....+... ......|+| ++++.+|+++...+
T Consensus 140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~ 219 (496)
T 3kya_A 140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDE 219 (496)
T ss_dssp SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGG
T ss_pred CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCccc
Confidence 356899998 34444 44444467899998887776655432 235899999 99999777776554
Q ss_pred --eEEEEEcCC-CCce----eEEeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECC-------CCee----------
Q 003236 620 --TVRVWDTEN-PDYS----LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSIN-------NGSC---------- 675 (837)
Q Consensus 620 --~I~IWDl~~-~~~~----~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~-------t~~~---------- 675 (837)
.|.+++... +... ...+.. -.....++++|++..|+++...++.|..+|+. ++..
T Consensus 220 ~~~V~~i~r~~~G~~~~~~~~~~v~~-~~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g 298 (496)
T 3kya_A 220 SPSVYIIKRNADGTFDDRSDIQLIAA-YKQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPN 298 (496)
T ss_dssp EEEEEEEECCTTSCCSTTSCEEEEEE-ESCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTT
T ss_pred CceEEEEecCCCCceeecccceeecc-CCCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeeccccccccc
Confidence 366665443 1221 022222 12456788999777788888888899999997 5543
Q ss_pred -e-eEEec--CCCeeEEEEecCCCEEEEEEc-CCeEEEEEC--CCCeE--EEEEcCC---C------------CCEE-EE
Q 003236 676 -A-GVFKC--QSGATQMRFQPRLGRILAAAI-ENYISILDV--ETQVC--RLKLQGH---K------------NQVH-SV 730 (837)
Q Consensus 676 -i-~~~~~--~~~i~sl~~sp~g~~llags~-dg~I~iwDl--~s~~~--~~~l~~h---~------------~~V~-sl 730 (837)
. ..+.. ......++|+|+++.++++.. .+.|+.+|. ..+.. ...+.+. . .... .+
T Consensus 299 ~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~~~~~~~~~aG~~g~~G~~DG~~~~a~f~~P~~gv 378 (496)
T 3kya_A 299 TFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKKEFITPYNFVGGYKQSGYRDDVGTEARMNNPCQGV 378 (496)
T ss_dssp TEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEEBTTBCCCBCCBGGGCBCSSEEEEE
T ss_pred ccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCcceecccEEecCCCCCCcccCCcccccccCCCeEEE
Confidence 1 12222 234678999999997666664 578888654 33322 0122111 1 1244 45
Q ss_pred EEc-------CCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecC------------------------CCceEEEEEeC
Q 003236 731 CWN-------TSGEYLASVS-DELVRVWSIGSGSKGECIHELSCT------------------------GNKFHSCVFHP 778 (837)
Q Consensus 731 ~~s-------pdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~------------------------~~~I~sv~fsp 778 (837)
+.. .++.++++-. ...|+.++. ++ .+.++.+. -.....+++++
T Consensus 379 ~vd~~~~~~~~~g~lyVaD~~N~rIr~i~~-~G----~v~TiaG~g~~~~~~~~~~~G~~dG~~~~~a~f~~P~gIavd~ 453 (496)
T 3kya_A 379 FVKNPDYTGEEEYDFYFVDRLNFCVRKVTP-EG----IVSTYAGRGASTSLADGNQWGTDDGDLREVARFRDVSGLVYDD 453 (496)
T ss_dssp EEECTTCCSSCCEEEEEEEGGGTEEEEECT-TC----BEEEEEESCTTHHHHHSCSCCCCCEETTTTCCCSSEEEEEEET
T ss_pred EEccccccccCCCeEEEEECCCCEEEEEeC-CC----CEEEEecccccccccCccccccCCCCchhhhhcCCCcEEEEEC
Confidence 554 4555555544 778999983 33 23333221 12356788888
Q ss_pred CCCEEEEEEc-CCeEEEEECCCCcEE
Q 003236 779 TFPSLLVIGC-YETLELWNMTENKTL 803 (837)
Q Consensus 779 dg~~L~sgs~-dg~I~IwDl~s~~~~ 803 (837)
+...|+++.. +..|+.+++......
T Consensus 454 ~~g~lyVaD~~N~rIrki~~~~~~~~ 479 (496)
T 3kya_A 454 VKEMFYVHDQVGHTIRTISMEQEENV 479 (496)
T ss_dssp TTTEEEEEETTTTEEEEEEECCCC--
T ss_pred CCCEEEEEeCCCCEEEEEECCCCccc
Confidence 7334555554 458888888765544
|
| >2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=98.08 E-value=0.00071 Score=74.02 Aligned_cols=226 Identities=8% Similarity=0.063 Sum_probs=123.5
Q ss_pred CCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeE--EEEec---cCCCCeEEEEEcCC---CCEEEEEeC-C-----Ce
Q 003236 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTV--KSTLE---EHTQWITDVRFSPS---LSRLATSSA-D-----RT 620 (837)
Q Consensus 555 ~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~--~~~l~---~h~~~I~~l~fspd---g~~Latgs~-D-----g~ 620 (837)
-..-..++|.|||++++ +..+|.|++++ +++. +..+. ........|+|+|+ +..|+++.. . ..
T Consensus 30 l~~P~~ia~~pdG~l~V-~e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~ 106 (352)
T 2ism_A 30 LEVPWALAFLPDGGMLI-AERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQ 106 (352)
T ss_dssp CSCEEEEEECTTSCEEE-EETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEE
T ss_pred CCCceEEEEcCCCeEEE-EeCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccE
Confidence 34567999999998555 45679999998 3432 22221 22456899999998 555555543 2 67
Q ss_pred EEEEEcCCCCc-----eeEEee---ccccceEEEEEcCCCCeEEEEEeC-------------CCcEEEEECCCC------
Q 003236 621 VRVWDTENPDY-----SLRTFT---GHSTTVMSLDFHPSKEDLLCSCDN-------------NSEIRYWSINNG------ 673 (837)
Q Consensus 621 I~IWDl~~~~~-----~~~~~~---~h~~~V~sl~fspdg~~llasgs~-------------Dg~I~vwDl~t~------ 673 (837)
|..|+...... .+..+. +.......|+|.|+|. ++++.+. .|.|..++....
T Consensus 107 v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~-Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG~~p~~np 185 (352)
T 2ism_A 107 VVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGM-LYVTTGEVYERELAQDLASLGGKILRLTPEGEPAPGNP 185 (352)
T ss_dssp EEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSC-EEEECCCTTCGGGGGCTTCSSSEEEEECTTSSBCTTCT
T ss_pred EEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCC-EEEEECCCCCCccccCCCCCceEEEEEcCCCCCCCCCc
Confidence 88888774321 111122 1112346899999985 4444321 246666665530
Q ss_pred ------eeeeEEe-cCCCeeEEEEecCCCEEEEEEcC-Ce--------EEEEECCC----------------CeEEEEEc
Q 003236 674 ------SCAGVFK-CQSGATQMRFQPRLGRILAAAIE-NY--------ISILDVET----------------QVCRLKLQ 721 (837)
Q Consensus 674 ------~~i~~~~-~~~~i~sl~~sp~g~~llags~d-g~--------I~iwDl~s----------------~~~~~~l~ 721 (837)
.....+. .......++|+|+.+.|+++... +. |.+..... ..++..+.
T Consensus 186 f~~~~~~~~~i~a~G~rnp~g~a~d~~~g~l~v~d~g~~~~~~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~~ 265 (352)
T 2ism_A 186 FLGRRGARPEVYSLGHRNPQGLAWHPKTGELFSSEHGPSGEQGYGHDEVNLIVPGGNYGWPRVVGRGNDPRYRDPLYFWP 265 (352)
T ss_dssp TTTCTTSCTTEEEECCSEECCCEECTTTCCEEEEEECC------CCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEECT
T ss_pred ccCCCCCCccEEEEcCCCcccEEEECCCCCEEEEEcCCCCCCCCCCeEEEEeccCCcCCCCcccCCCCCCCCcCCeEecC
Confidence 1111222 12336678999954555555443 22 33332211 01222232
Q ss_pred CCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCc---eeEEEeecCCCceEEEEEeCCCCEEEEE
Q 003236 722 GHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKG---ECIHELSCTGNKFHSCVFHPTFPSLLVI 786 (837)
Q Consensus 722 ~h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~---~~i~~~~~~~~~I~sv~fspdg~~L~sg 786 (837)
+......++| .+|.++++.. .+.|...++...... .....+......+..+++.|||..+++.
T Consensus 266 -~~~ap~G~~~-~~G~l~v~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~pdG~lyv~~ 332 (352)
T 2ism_A 266 -QGFPPGNLAF-FRGDLYVAGLRGQALLRLVLEGERGRWRVLRVETALSGFGRLREVQVGPDGALYVTT 332 (352)
T ss_dssp -TCCCEEEEEE-ETTEEEEEETTTTEEEEEEEEEETTEEEEEEEEEEEESSCCEEEEEECTTSCEEEEE
T ss_pred -CCCCCcceEE-ECCEEEEEECCCCEEEEEEECCCCcceeecchheecccCCCeeEEEECCCCcEEEEE
Confidence 2234567777 4566555544 667888877644210 1112222234678899999998654444
|
| >3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A* | Back alignment and structure |
|---|
Probab=98.05 E-value=0.0011 Score=78.20 Aligned_cols=223 Identities=7% Similarity=-0.010 Sum_probs=138.9
Q ss_pred CCCcEEEEeCCCCe-EEEEeccCCCCeEEEEEcCCCCEEEEEeC-CCeEEEEEcCCCCceeEEeeccccceEEEEEcCCC
Q 003236 575 HDKKAVLWCTESFT-VKSTLEEHTQWITDVRFSPSLSRLATSSA-DRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSK 652 (837)
Q Consensus 575 ~Dg~I~VWd~~t~~-~~~~l~~h~~~I~~l~fspdg~~Latgs~-Dg~I~IWDl~~~~~~~~~~~~h~~~V~sl~fspdg 652 (837)
....|++.++.... ....+...-..+..|+|++.+..|+.+.. .+.|..++++........+...-.....+++++.+
T Consensus 16 ~~~~I~~i~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~v~~~~~~~P~GlAvD~~~ 95 (619)
T 3s94_A 16 NRRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLG 95 (619)
T ss_dssp CSSBEEEECCC---------CBCCSCEEEEEEETTTTEEEEEETTTTEEEEEEC-----CEEEECSSCSCEEEEEEETTT
T ss_pred ccccEEEEeCCCCcceEEEEEcCCCceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCceEEEEeCCCCCcCeEEEEecC
Confidence 35678888887643 22222233456789999997666666554 67899999876432122333333568899999987
Q ss_pred CeEEEEEeCCCcEEEEECCCCeeeeEE-ecCCCeeEEEEecCCCEEEEEEc--CCeEEEEECCCCeEEEEEcCCCCCEEE
Q 003236 653 EDLLCSCDNNSEIRYWSINNGSCAGVF-KCQSGATQMRFQPRLGRILAAAI--ENYISILDVETQVCRLKLQGHKNQVHS 729 (837)
Q Consensus 653 ~~llasgs~Dg~I~vwDl~t~~~i~~~-~~~~~i~sl~~sp~g~~llags~--dg~I~iwDl~s~~~~~~l~~h~~~V~s 729 (837)
..++++-...+.|.+.++........+ ..-.....+++.|.++.|+.+.. .+.|...++............-.....
T Consensus 96 ~~ly~~d~~~~~I~v~~~dG~~~~~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~~~~l~~~~~~~P~G 175 (619)
T 3s94_A 96 EKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNG 175 (619)
T ss_dssp TEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSSEEE
T ss_pred CEEEEEeCCCCEEEEEECCCCCEEEEEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCCceEEEEeCCCCCCcE
Confidence 888888778899999999855433333 22345778999998888887774 367888887654333333334557899
Q ss_pred EEEcCCCCEEEEEe--CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEc-CCeEEEEECCCCcE
Q 003236 730 VCWNTSGEYLASVS--DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGC-YETLELWNMTENKT 802 (837)
Q Consensus 730 l~~spdg~~Lasgs--Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fspdg~~L~sgs~-dg~I~IwDl~s~~~ 802 (837)
|++++++..|+.+. .+.|..+|+........+ .........+++..+ .|+.+.. .+.|...|..+++.
T Consensus 176 lald~~~~~LY~aD~~~~~I~~~~~dG~~~~~~~---~~~~~~P~gi~~~~~--~ly~td~~~~~V~~~d~~tg~~ 246 (619)
T 3s94_A 176 LTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVV---KGSLPHPFALTLFED--ILYWTDWSTHSILACNKYTGEG 246 (619)
T ss_dssp EEEETTTTEEEEEETTTCCEEEESSSCCEEC------------CCCEEESSS--EEEEECTTTCSEEEEESSSCCC
T ss_pred EEEEccCCEEEEEeCCCCeEEEecCCCCccEEEE---eCCCCCceEEEEeCC--EEEEecCCCCEEEEEECCCCcc
Confidence 99999877777776 668888888654221111 111222345566555 5666654 45888889877653
|
| >4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A* | Back alignment and structure |
|---|
Probab=98.02 E-value=0.006 Score=72.02 Aligned_cols=224 Identities=8% Similarity=-0.019 Sum_probs=151.1
Q ss_pred EEEEEECCCcEEEEeCCCCeEEEEec-cCCCCeEEEEEcCCCCEEEEE-eCCCeEEEEEcCCCCceeEEeeccccceEEE
Q 003236 569 LLATGGHDKKAVLWCTESFTVKSTLE-EHTQWITDVRFSPSLSRLATS-SADRTVRVWDTENPDYSLRTFTGHSTTVMSL 646 (837)
Q Consensus 569 ~Lasgs~Dg~I~VWd~~t~~~~~~l~-~h~~~I~~l~fspdg~~Latg-s~Dg~I~IWDl~~~~~~~~~~~~h~~~V~sl 646 (837)
+|+.+ ..+.|+..++++......+. ..-..+..|+|++.+..|+.+ ..++.|+.++++.... ...+.........|
T Consensus 8 ~Ll~s-~~~~I~~i~l~~~~~~~~~~~~~~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~-~~v~~~g~~~P~Gl 85 (628)
T 4a0p_A 8 FLLFS-RRADIRRISLETNNNNVAIPLTGVKEASALDFDVTDNRIYWTDISLKTISRAFMNGSAL-EHVVEFGLDYPEGM 85 (628)
T ss_dssp EEEEE-ETTEEEEEESSCTTCEEECCCCSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEECSSCSCCCEE
T ss_pred EEEEE-eCCcEEEEECCCCCcceEEEcCCCCceEEEEEECCCCEEEEEECCCCeEEEEECCCCCc-EEEEeCCCCCcceE
Confidence 55544 45689999998655433332 223468899999976666554 4578999999876442 22233223457789
Q ss_pred EEcCCCCeEEEEEeCCCcEEEEECCCCeeeeEE-ecCCCeeEEEEecCCCEEEEEEc--CCeEEEEECCCCeEEEEEcCC
Q 003236 647 DFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVF-KCQSGATQMRFQPRLGRILAAAI--ENYISILDVETQVCRLKLQGH 723 (837)
Q Consensus 647 ~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~-~~~~~i~sl~~sp~g~~llags~--dg~I~iwDl~s~~~~~~l~~h 723 (837)
++++.+..++++-...+.|.+.++........+ ..-.....+++.|..+.|+.+.. .+.|...++........+. .
T Consensus 86 AvD~~~~~LY~tD~~~~~I~v~~~dG~~~~~l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~~~l~~-~ 164 (628)
T 4a0p_A 86 AVDWLGKNLYWADTGTNRIEVSKLDGQHRQVLVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSERTTLVP-N 164 (628)
T ss_dssp EEETTTTEEEEEETTTTEEEEEETTSTTCEEEECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEEC-S
T ss_pred EEEeCCCEEEEEECCCCEEEEEecCCCcEEEEEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCceEEEEC-C
Confidence 998887888878777889999999754432222 22355789999998888888774 4688888887554333333 4
Q ss_pred CCCEEEEEEcCCCCEEEEEe--CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEc-CCeEEEEECCCC
Q 003236 724 KNQVHSVCWNTSGEYLASVS--DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGC-YETLELWNMTEN 800 (837)
Q Consensus 724 ~~~V~sl~~spdg~~Lasgs--Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fspdg~~L~sgs~-dg~I~IwDl~s~ 800 (837)
-.....|++++++..|+.+. .+.|..+|+..... +. +.........+++.. ..|+.+.. .+.|...|..++
T Consensus 165 ~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~~-~v---~~~~l~~P~glav~~--~~ly~tD~~~~~I~~~dk~tg 238 (628)
T 4a0p_A 165 VGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNR-EV---IADDLPHPFGLTQYQ--DYIYWTDWSRRSIERANKTSG 238 (628)
T ss_dssp CSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EE---EEECCSCEEEEEEET--TEEEEEETTTTEEEEEETTTC
T ss_pred CCCcceEEEccccCEEEEEECCCCEEEEEcCCCCce-EE---eeccCCCceEEEEEC--CEEEEecCCCCEEEEEECCCC
Confidence 56788999999888777776 67899999976532 22 222334456777765 35666665 568999997666
Q ss_pred c
Q 003236 801 K 801 (837)
Q Consensus 801 ~ 801 (837)
+
T Consensus 239 ~ 239 (628)
T 4a0p_A 239 Q 239 (628)
T ss_dssp C
T ss_pred C
Confidence 4
|
| >3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A* | Back alignment and structure |
|---|
Probab=98.02 E-value=0.005 Score=72.58 Aligned_cols=277 Identities=9% Similarity=-0.014 Sum_probs=161.4
Q ss_pred CCCeEEEEEcCCCCEEE-EEECCCcEEEEeCCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeC--CCeEEEEEcCCCCc
Q 003236 555 TSKVESCHFSPDGKLLA-TGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA--DRTVRVWDTENPDY 631 (837)
Q Consensus 555 ~~~V~sl~fSpdg~~La-sgs~Dg~I~VWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~--Dg~I~IWDl~~~~~ 631 (837)
-.....+++.+.+..|+ +-...+.|.+.+++.......+...-.....|++.|.+.+|+.+.. .+.|...+++....
T Consensus 83 ~~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~dG~~~~~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~~ 162 (619)
T 3s94_A 83 LLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSR 162 (619)
T ss_dssp CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCSC
T ss_pred CCCcCeEEEEecCCEEEEEeCCCCEEEEEECCCCCEEEEEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCCce
Confidence 35688999999655554 4456789999998764433333344456789999997666666654 35777777764332
Q ss_pred eeEEeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeeEEe-cCCCeeEEEEecCCCEEEEEEc-CCeEEEE
Q 003236 632 SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK-CQSGATQMRFQPRLGRILAAAI-ENYISIL 709 (837)
Q Consensus 632 ~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~-~~~~i~sl~~sp~g~~llags~-dg~I~iw 709 (837)
.......-.....|++++++..++++-...+.|..+|+.......... .......+++..+ .++.+.. .+.|...
T Consensus 163 -~~l~~~~~~~P~Glald~~~~~LY~aD~~~~~I~~~~~dG~~~~~~~~~~~~~P~gi~~~~~--~ly~td~~~~~V~~~ 239 (619)
T 3s94_A 163 -FIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFED--ILYWTDWSTHSILAC 239 (619)
T ss_dssp -EEEECSSCSSEEEEEEETTTTEEEEEETTTCCEEEESSSCCEEC---------CCCEEESSS--EEEEECTTTCSEEEE
T ss_pred -EEEEeCCCCCCcEEEEEccCCEEEEEeCCCCeEEEecCCCCccEEEEeCCCCCceEEEEeCC--EEEEecCCCCEEEEE
Confidence 222222345678999999888788777777889999997544333222 1122345666544 5555553 5788888
Q ss_pred ECCCCeEEEEEcC-----------CC---------------------------CCEEEEEE-----cCCC--------CE
Q 003236 710 DVETQVCRLKLQG-----------HK---------------------------NQVHSVCW-----NTSG--------EY 738 (837)
Q Consensus 710 Dl~s~~~~~~l~~-----------h~---------------------------~~V~sl~~-----spdg--------~~ 738 (837)
|..+++....+.. |. ....|.|- .+|+ .+
T Consensus 240 d~~tg~~~~~i~~~~~~p~~i~v~~~~~qp~~~n~C~~~ng~Cs~lCl~~~~~~~~~C~C~~g~~l~~d~~~C~~~~~~~ 319 (619)
T 3s94_A 240 NKYTGEGLREIHSDIFSPMDIHAFSQQRQPNATNPCGIDNGGCSHLCLMSPVKPFYQCACPTGVKLLENGKTCKDGATEL 319 (619)
T ss_dssp ESSSCCCCEECCSCCCCCSEEEECCGGGSCCCCCTTTTTGGGCSSEEEECSSTTSEEEECCTTCCBCTTSSCBCSSCSEE
T ss_pred ECCCCcccEEEecCCCCCcEEEEEccccCCCccccccCCCCcccceEECCCCCCCceEeCCchheecccCcccCCCCceE
Confidence 8876543222111 10 00111110 0111 24
Q ss_pred EEEEeCCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEc-CCeEEEEECCCCcEEEe-ccCCCCeeEEE
Q 003236 739 LASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGC-YETLELWNMTENKTLTL-SAHDKLVSSLA 816 (837)
Q Consensus 739 LasgsDg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fspdg~~L~sgs~-dg~I~IwDl~s~~~~~l-~~h~~~V~sla 816 (837)
|+.+..+.|+..++...........+. .-..+..++|++.+..|+.+.. .+.|+.+++.......+ ...-..+..++
T Consensus 320 Ll~~~~~~i~~i~l~~~~~~~~~~~~~-~l~~~~~ld~d~~~~~ly~sD~~~~~I~r~~~~g~~~~~v~~~~~~~p~GlA 398 (619)
T 3s94_A 320 LLLARRTDLRRISLDTPDFTDIVLQLE-DIRHAIAIDYDPVEGYIYWTDDEVRAIRRSFIDGSGSQFVVTAQIAHPDGIA 398 (619)
T ss_dssp EEEEESSCEEEEESSSTTCCCEECCCS-CCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEE
T ss_pred EEEEcccceEEEecCCCccceeEEecc-ccCccEEEEEEcCCCeEEEEeCCCCeEEEEEcCCCccEEEEECCCCCcCceE
Confidence 555556677777776553211111111 1245778999997777777765 56899999876544333 23335678899
Q ss_pred EeCCCCEEEEEE-CCCcEEE
Q 003236 817 ASTVNGMVASAS-HDKCVKI 835 (837)
Q Consensus 817 ~spdg~~LaSgs-~DG~I~I 835 (837)
+...++.|+.+. ..+.|.+
T Consensus 399 vD~~~~~lY~tD~~~~~I~v 418 (619)
T 3s94_A 399 VDWVARNLYWTDTGTDRIEV 418 (619)
T ss_dssp EETTTTEEEEEETTTTEEEE
T ss_pred EecccCcEEEEeCCCCcEEE
Confidence 987555444443 3455544
|
| >3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A* | Back alignment and structure |
|---|
Probab=98.01 E-value=0.0039 Score=68.20 Aligned_cols=230 Identities=10% Similarity=0.051 Sum_probs=127.2
Q ss_pred CCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCe-EEEEec---cCCCCeEEEEEcCC---CCEEEEEeC----C----C
Q 003236 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFT-VKSTLE---EHTQWITDVRFSPS---LSRLATSSA----D----R 619 (837)
Q Consensus 555 ~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~-~~~~l~---~h~~~I~~l~fspd---g~~Latgs~----D----g 619 (837)
-..-..++|.|||++++ +..+|.|++++ .+++ .+..+. ........|+|+|+ +..|+++.. + .
T Consensus 28 l~~P~~ia~~pdG~l~V-~e~~g~I~~~d-~~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~ 105 (354)
T 3a9g_A 28 LEVPWSIAPLGGGRYLV-TERPGRLVLIS-PSGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRN 105 (354)
T ss_dssp CSCEEEEEEEETTEEEE-EETTTEEEEEC-SSCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEE
T ss_pred CCCCeEEEEcCCCeEEE-EeCCCEEEEEe-CCCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcce
Confidence 34578999999997554 56679999997 3444 222221 22356889999997 555555443 3 6
Q ss_pred eEEEEEcCCCC------cee-EEeec-cccceEEEEEcCCCCeEEEEEeC------------CCcEEEEECCCCe-----
Q 003236 620 TVRVWDTENPD------YSL-RTFTG-HSTTVMSLDFHPSKEDLLCSCDN------------NSEIRYWSINNGS----- 674 (837)
Q Consensus 620 ~I~IWDl~~~~------~~~-~~~~~-h~~~V~sl~fspdg~~llasgs~------------Dg~I~vwDl~t~~----- 674 (837)
.|..|+..... ..+ ..+.. .......|+|.|+|..++..++. .|.|..++....-
T Consensus 106 ~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG~~p~~np 185 (354)
T 3a9g_A 106 RVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTGDAADPRLAQDLSSLAGKILRVDEEGRPPADNP 185 (354)
T ss_dssp EEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECCCTTCGGGGTCTTCCSSEEEEECTTSCCCTTSS
T ss_pred EEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEECCCCCCccccCCCCCCeEEEEEcCCCCCCCCCC
Confidence 78888876541 111 11221 11234679999998644433321 2456666654220
Q ss_pred --eeeEEe-cCCCeeEEEEecCCCEEEEEEcCC----eEEEEECCC----------------CeEEEEEcCCCCCEEEEE
Q 003236 675 --CAGVFK-CQSGATQMRFQPRLGRILAAAIEN----YISILDVET----------------QVCRLKLQGHKNQVHSVC 731 (837)
Q Consensus 675 --~i~~~~-~~~~i~sl~~sp~g~~llags~dg----~I~iwDl~s----------------~~~~~~l~~h~~~V~sl~ 731 (837)
....+. .......++|+|+.+.|+++.... .|.+..... ..++..+......+..++
T Consensus 186 f~~~~i~a~G~rnp~Gla~d~~~g~l~v~d~g~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~~~~~~ap~G~~ 265 (354)
T 3a9g_A 186 FPNSPIWSYGHRNPQGIDWHRASGVMVATEHGPVGHDEVNIILKGGNYGWPLATGKAGRGEFVDPVIDTGSETWAPSGAS 265 (354)
T ss_dssp STTCCEEEECCSCCCEEEECTTTCCEEEEECCSSSCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEECTTCCCCEEEEE
T ss_pred CCCCcEEEEccCCcceEEEeCCCCCEEEEecCCCCCcEEEEecCCCcCCCCcccCCCCCCCCcCCEeecCCCCcCCcceE
Confidence 011121 234467899999555566655432 344433211 012233311234577888
Q ss_pred Ec-------CCCCEEEEEe-CCeEEEEEcCCCCCceeEEEe-ecCCCceEEEEEeCCCCEEEEE
Q 003236 732 WN-------TSGEYLASVS-DELVRVWSIGSGSKGECIHEL-SCTGNKFHSCVFHPTFPSLLVI 786 (837)
Q Consensus 732 ~s-------pdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~-~~~~~~I~sv~fspdg~~L~sg 786 (837)
|. .+|.++++.. .+.|...++...........+ ......+..+++.|||..+++.
T Consensus 266 ~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~~rp~~v~~~pDG~lyv~~ 329 (354)
T 3a9g_A 266 FVHGDMFPGLRGWLLIACLRGSMLAAVNFGDNMEVRKISTFFKNVFGRLRDVVIDDDGGILIST 329 (354)
T ss_dssp ECCSSSCGGGTTEEEEEETTTTEEEEEEECGGGCEEEEEEECTTTSCCEEEEEECTTSCEEEEE
T ss_pred EECCCCCcccCCcEEEEEcCCCEEEEEEECCCCcccceeeeccCCCCCeeEEEECCCCcEEEEE
Confidence 83 4666666555 678888888753211111222 2224578899999999644443
|
| >1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A | Back alignment and structure |
|---|
Probab=97.98 E-value=1.4e-05 Score=95.96 Aligned_cols=226 Identities=8% Similarity=-0.022 Sum_probs=137.8
Q ss_pred CCcEEEEeCCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEe-CCCeEEEEEcCCC---CceeEEeeccccceEEEEEcCC
Q 003236 576 DKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSS-ADRTVRVWDTENP---DYSLRTFTGHSTTVMSLDFHPS 651 (837)
Q Consensus 576 Dg~I~VWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs-~Dg~I~IWDl~~~---~~~~~~~~~h~~~V~sl~fspd 651 (837)
.+.|++.++.+......+.. ...+..|+|++.+..|+.+. ..+.|+.+++... ......+.........|++.+.
T Consensus 385 ~~~I~~id~~~~~~~~~~~~-~~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~~ 463 (699)
T 1n7d_A 385 RHEVRKMTLDRSEYTSLIPN-LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWI 463 (699)
T ss_dssp TTC-CEECTTSCCEECCSCC-CTTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCCS
T ss_pred ccceEEEeCCCCcceeeecc-CcceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEee
Confidence 46788888887665544433 34577899998766666654 4578999998751 1111222212234567888876
Q ss_pred CCeEEEEEeCCCcEEEEECCCCeeeeEEec-CCCeeEEEEecCCCEEEEEEcC--CeEEEEECCCCeEEEEEcCCCCCEE
Q 003236 652 KEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAIE--NYISILDVETQVCRLKLQGHKNQVH 728 (837)
Q Consensus 652 g~~llasgs~Dg~I~vwDl~t~~~i~~~~~-~~~i~sl~~sp~g~~llags~d--g~I~iwDl~s~~~~~~l~~h~~~V~ 728 (837)
+..++++-...+.|.++++........+.. ......+++.|.+++|+.+... +.|.++++........+...-...+
T Consensus 464 ~g~LY~tD~~~~~I~v~d~dg~~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~~l~~~~l~~Pn 543 (699)
T 1n7d_A 464 HSNIYWTDSVLGTVSVADTKGVKRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPN 543 (699)
T ss_dssp SSBCEECCTTTSCEEEEBSSSCCEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCCEESCSSCSSCC
T ss_pred CCcEEEEeccCCeEEEEecCCCceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCeeEEEeCCCCCcc
Confidence 666776766678999999886544433332 2456788999987777766542 6888888764322222222234567
Q ss_pred EEEEcCCCCEEEEEe--CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEc-CCeEEEEECCCCcEEEe
Q 003236 729 SVCWNTSGEYLASVS--DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGC-YETLELWNMTENKTLTL 805 (837)
Q Consensus 729 sl~~spdg~~Lasgs--Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fspdg~~L~sgs~-dg~I~IwDl~s~~~~~l 805 (837)
.|+|++++..|+.+. .+.|.++++..... ..+............+++..+ .|+++.. .+.|..+|..+++.+..
T Consensus 544 Glavd~~~~~LY~aD~~~~~I~~~d~dG~~~-~~~~~~~~~~~~P~glavd~~--~lywtd~~~~~V~~~d~~~G~~~~~ 620 (699)
T 1n7d_A 544 GITLDLLSGRLYWVDSKLHSISSIDVNGGNR-KTILEDEKRLAHPFSLAVFED--KVFWTDIINEAIFSANRLTGSDVNL 620 (699)
T ss_dssp CEEECTTTCCEEEEETTTTEEEEECSSSSCC-EEECCCSSSCSSCCCCEEETT--EEEEECSTTTCEEEEETTTEEEEEC
T ss_pred EEEEeccCCEEEEEecCCCeEEEEccCCCce-EEEEecCCcCCCceEeEEECC--EEEEEeCCCCeEEEEEccCCCceEE
Confidence 899999876666555 66899999875321 222111111223345555544 5555544 56899999888876643
|
| >2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus} | Back alignment and structure |
|---|
Probab=97.97 E-value=0.0016 Score=70.31 Aligned_cols=232 Identities=11% Similarity=0.030 Sum_probs=131.1
Q ss_pred CCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEec---cCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCc
Q 003236 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLE---EHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDY 631 (837)
Q Consensus 555 ~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~---~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~~~~ 631 (837)
...+.+|.|++ +..++ ++.++.|+. ..+.++.-..+. .+.+.+..|.+.+++..++++ .++.|.. ..+.++.
T Consensus 79 ~~~~~~i~~~~-~~~~~-~g~~g~i~~-S~DgG~tW~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~g~v~~-S~DgG~t 153 (327)
T 2xbg_A 79 DYRFNSVSFQG-NEGWI-VGEPPIMLH-TTDGGQSWSQIPLDPKLPGSPRLIKALGNGSAEMIT-NVGAIYR-TKDSGKN 153 (327)
T ss_dssp CCEEEEEEEET-TEEEE-EEETTEEEE-ESSTTSSCEECCCCTTCSSCEEEEEEEETTEEEEEE-TTCCEEE-ESSTTSS
T ss_pred CccEEEEEecC-CeEEE-EECCCeEEE-ECCCCCCceECccccCCCCCeEEEEEECCCCEEEEe-CCccEEE-EcCCCCC
Confidence 34588899986 44444 455665544 333333322222 234567888887776665555 4564422 1222222
Q ss_pred eeEEeeccccceEEEEEcCCCCeEEEEEeCCCcEEE-EEC--CCCeeeeEEecCCCeeEEEEecCCCEEEEEEcCCeEEE
Q 003236 632 SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRY-WSI--NNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISI 708 (837)
Q Consensus 632 ~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~v-wDl--~t~~~i~~~~~~~~i~sl~~sp~g~~llags~dg~I~i 708 (837)
-......+...+..+++.+++. +++.+. +|.|+. +|- .+.+.+. ......+..+.+.+++. +++++.+|.+++
T Consensus 154 W~~~~~~~~~~~~~~~~~~~~~-~~~~g~-~G~~~~S~d~gG~tW~~~~-~~~~~~~~~~~~~~~g~-~~~~~~~G~~~~ 229 (327)
T 2xbg_A 154 WQALVQEAIGVMRNLNRSPSGE-YVAVSS-RGSFYSTWEPGQTAWEPHN-RTTSRRLHNMGFTPDGR-LWMIVNGGKIAF 229 (327)
T ss_dssp EEEEECSCCCCEEEEEECTTSC-EEEEET-TSSEEEEECTTCSSCEEEE-CCSSSCEEEEEECTTSC-EEEEETTTEEEE
T ss_pred CEEeecCCCcceEEEEEcCCCc-EEEEEC-CCcEEEEeCCCCCceeECC-CCCCCccceeEECCCCC-EEEEeCCceEEE
Confidence 1222334556789999999865 554444 455544 332 2222221 12245678888888865 556667788777
Q ss_pred EECCCCeEEEEEcC----CCCCEEEEEEcCCCCEEEEEeCCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEE
Q 003236 709 LDVETQVCRLKLQG----HKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLL 784 (837)
Q Consensus 709 wDl~s~~~~~~l~~----h~~~V~sl~~spdg~~LasgsDg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fspdg~~L~ 784 (837)
.+...++.-..+.. +...+.++.+.+++.+++++.++.| ++..+.+.....+.........+.++.|.+++ .++
T Consensus 230 s~~D~G~tW~~~~~~~~~~~~~~~~v~~~~~~~~~~~g~~g~i-~~S~DgG~tW~~~~~~~~~~~~~~~v~~~~~~-~~~ 307 (327)
T 2xbg_A 230 SDPDNSENWGELLSPLRRNSVGFLDLAYRTPNEVWLAGGAGAL-LCSQDGGQTWQQDVDVKKVPSNFYKILFFSPD-QGF 307 (327)
T ss_dssp EETTEEEEECCCBCTTSSCCSCEEEEEESSSSCEEEEESTTCE-EEESSTTSSCEECGGGTTSSSCCCEEEEEETT-EEE
T ss_pred ecCCCCCeeEeccCCcccCCcceEEEEecCCCEEEEEeCCCeE-EEeCCCCcccEEcCccCCCCCCeEEEEEECCC-ceE
Confidence 65333333222221 2235889999998888888888877 45555553322221111123567888887554 477
Q ss_pred EEEcCCeEEEEEC
Q 003236 785 VIGCYETLELWNM 797 (837)
Q Consensus 785 sgs~dg~I~IwDl 797 (837)
+++.+|.|.-++-
T Consensus 308 ~~G~~G~i~~~~~ 320 (327)
T 2xbg_A 308 ILGQKGILLRYVT 320 (327)
T ss_dssp EECSTTEEEEECC
T ss_pred EEcCCceEEEEcC
Confidence 7888888877653
|
| >2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis} | Back alignment and structure |
|---|
Probab=97.94 E-value=0.0022 Score=68.89 Aligned_cols=197 Identities=10% Similarity=0.115 Sum_probs=122.8
Q ss_pred CCeEEEEEcCCCCEEEEEE-CCCcEEEEeCCCCeEEEE-ecc----CC--CCeEEEEE---cCCCCEEEEEe--------
Q 003236 556 SKVESCHFSPDGKLLATGG-HDKKAVLWCTESFTVKST-LEE----HT--QWITDVRF---SPSLSRLATSS-------- 616 (837)
Q Consensus 556 ~~V~sl~fSpdg~~Lasgs-~Dg~I~VWd~~t~~~~~~-l~~----h~--~~I~~l~f---spdg~~Latgs-------- 616 (837)
---.|++|++....|..++ ..++|..||...+..... +.. .. ..+..|.| .++++++++..
T Consensus 13 ~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~~~ 92 (334)
T 2p9w_A 13 LTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFNFA 92 (334)
T ss_dssp CCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTCTT
T ss_pred cCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEccccccccc
Confidence 3345799988555655555 789999999875544333 322 11 13689999 68877777543
Q ss_pred -----CCCeEEEEEcC---CCCceeEE-eeccc-----------cceEEEEEcCCCCeEEEEEeCC-CcEEEEECCCCee
Q 003236 617 -----ADRTVRVWDTE---NPDYSLRT-FTGHS-----------TTVMSLDFHPSKEDLLCSCDNN-SEIRYWSINNGSC 675 (837)
Q Consensus 617 -----~Dg~I~IWDl~---~~~~~~~~-~~~h~-----------~~V~sl~fspdg~~llasgs~D-g~I~vwDl~t~~~ 675 (837)
.+..|..||+. +++..... +.... ..+..++..++|+.++ +++.. +.|..++.....
T Consensus 93 g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYV-t~s~~~~~I~rV~pdG~~- 170 (334)
T 2p9w_A 93 DQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYV-AFALGMPAIARVSADGKT- 170 (334)
T ss_dssp SCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEE-EEEESSCEEEEECTTSCC-
T ss_pred ccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEE-eCCCCCCeEEEEeCCCCE-
Confidence 26789999998 65542222 21111 2478999999987554 67667 778777776442
Q ss_pred eeEEec-------CCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeE--EEEE-cCC---CCCEEEE-EEcCCCCEEEE
Q 003236 676 AGVFKC-------QSGATQMRFQPRLGRILAAAIENYISILDVETQVC--RLKL-QGH---KNQVHSV-CWNTSGEYLAS 741 (837)
Q Consensus 676 i~~~~~-------~~~i~sl~~sp~g~~llags~dg~I~iwDl~s~~~--~~~l-~~h---~~~V~sl-~~spdg~~Las 741 (837)
+..+.. ....+.|+++|+++.|++....+.|..+|+.+... +..- .+. -.....| ..-.+|+.|++
T Consensus 171 ~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~pv~~~v~~~~~G~~~~~~~~dgilp~~~~G~vllV 250 (334)
T 2p9w_A 171 VSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSKPYAWPEPVKINGDFGTLSGTEKIVTVPVGNESVLV 250 (334)
T ss_dssp EEEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSSSSCCCEECEESSCCCCCTTEEEEEEEEETTEEEEE
T ss_pred EeeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCCCcceeecccccCCcccccCcccccccccCCEEEEE
Confidence 222221 12367999999999999988899999999885432 2111 021 1223443 33347777555
Q ss_pred Ee--CCeEEEEEcCC
Q 003236 742 VS--DELVRVWSIGS 754 (837)
Q Consensus 742 gs--Dg~I~IwDl~s 754 (837)
+. .+.+.+.+...
T Consensus 251 ~~~~~~~~~l~S~Dg 265 (334)
T 2p9w_A 251 GARAPYAISFRSWDN 265 (334)
T ss_dssp EEETTEEEEEECSST
T ss_pred EcCCCCEEEEECCCC
Confidence 54 55555555444
|
| >3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A | Back alignment and structure |
|---|
Probab=97.90 E-value=0.02 Score=68.95 Aligned_cols=263 Identities=11% Similarity=0.072 Sum_probs=155.1
Q ss_pred CCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeE
Q 003236 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLR 634 (837)
Q Consensus 555 ~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~~~~~~~ 634 (837)
...|.++....+| .|.+|+.+| +.+||..+.+...........|.++.. .++ .|..++.+ -|..||..+... .
T Consensus 62 ~~~i~~i~~d~~g-~lWigT~~G-l~~yd~~~~~f~~~~~~~~~~i~~i~~-~~g-~lWigt~~-Gl~~~~~~~~~~--~ 134 (758)
T 3ott_A 62 NTRIYCGVIIDNT-YLYMGTDNG-ILVYNYRADRYEQPETDFPTDVRTMAL-QGD-TLWLGALN-GLYTYQLQSRKL--T 134 (758)
T ss_dssp SSCEEEEEEETTT-EEEEEETTE-EEEEETTTTEECCCSCCCCSCEEEEEE-ETT-EEEEEETT-EEEEEETTTCCE--E
T ss_pred CceEEEEEEcCCC-cEEEEeCCC-eEEEeCCCCEEECcccCCCceEEEEEe-cCC-cEEEEcCC-cceeEeCCCCeE--E
Confidence 3568898888776 566666655 889998876543311112345777754 344 56666666 588889876542 2
Q ss_pred Eee-----ccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeeEEec------CCCeeEEEEecCCCEEEEEEcC
Q 003236 635 TFT-----GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC------QSGATQMRFQPRLGRILAAAIE 703 (837)
Q Consensus 635 ~~~-----~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~------~~~i~sl~~sp~g~~llags~d 703 (837)
.+. .....|.++....++...+ +.. +.|..+|..+++....... ...|.++....+++.|.+++.
T Consensus 135 ~~~~~~~~l~~~~i~~i~~d~~g~lWi--gt~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~~~~lWigt~- 210 (758)
T 3ott_A 135 SFDTRRNGLPNNTIYSIIRTKDNQIYV--GTY-NGLCRYIPSNGKFEGIPLPVHSSQSNLFVNSLLEDTTRQCVWIGTE- 210 (758)
T ss_dssp EECHHHHCCSCSCEEEEEECTTCCEEE--EET-TEEEEEETTTTEEEEECCCCCTTCSSCCEEEEEEETTTTEEEEEEE-
T ss_pred EeccCCCCcCCCeEEEEEEcCCCCEEE--EeC-CCHhhCccCCCceEEecCCCccccccceeEEEEEECCCCEEEEEEC-
Confidence 221 1234688888887765333 443 4588899877654322111 123777877777777666764
Q ss_pred CeEEEEECCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCeEEEEEcCCCCCceeEEEe-----ecCCCceEEEEEeC
Q 003236 704 NYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHEL-----SCTGNKFHSCVFHP 778 (837)
Q Consensus 704 g~I~iwDl~s~~~~~~l~~h~~~V~sl~~spdg~~LasgsDg~I~IwDl~s~~~~~~i~~~-----~~~~~~I~sv~fsp 778 (837)
+.|..||..+++...........|.++....+|.+.+.. ++-|.+++..+... ..+... ......|.++....
T Consensus 211 ~Gl~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWigT-~~Gl~~~~~~~~~~-~~~~~~~~~~~~l~~~~i~~i~~D~ 288 (758)
T 3ott_A 211 GYLFQYFPSTGQIKQTEAFHNNSIKSLALDGNGDLLAGT-DNGLYVYHNDTTPL-QHIIHDSRNIQSLTNNIIWNIFADQ 288 (758)
T ss_dssp EEEEEEETTTTEEEEEEEEEEEEEEEEEECTTCCEEEEE-TTEEEEECCTTSCC-EEECCCTTCTTSCSCSCEEEEEECT
T ss_pred CCCeEEcCCCCeEEeccCCCCCeEEEEEEcCCCCEEEEe-CCceeEEecCCCcE-EEEEcCCCCcCcCCcCeEEEEEEcC
Confidence 568899988765432211123458889888888877755 55688888766421 111100 01234688888888
Q ss_pred CCCEEEEEEcCCeEEEEECCCC-cEEEec-----cCCCCeeEEEEeCCCCEEEEEECCCcE
Q 003236 779 TFPSLLVIGCYETLELWNMTEN-KTLTLS-----AHDKLVSSLAASTVNGMVASASHDKCV 833 (837)
Q Consensus 779 dg~~L~sgs~dg~I~IwDl~s~-~~~~l~-----~h~~~V~sla~spdg~~LaSgs~DG~I 833 (837)
+|. |.+|+..| |.++..... +..... .....|.++....+|.+.+. +.+|.+
T Consensus 289 ~g~-lWiGT~~G-l~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~D~~g~lWiG-t~~Gl~ 346 (758)
T 3ott_A 289 EHN-IWLGTDYG-ISLSRYNSALQFIPISQITGTGDGNQFYSLFRDSKGFYWFG-GANGLI 346 (758)
T ss_dssp TCC-EEEEESSS-EEEECCCC-CEEEEHHHHSCSCCCCBEEEEEECTTCCEEEE-ETTEEE
T ss_pred CCC-EEEEeCCc-ccccccCCceeEEecccCCCCCCCceEEEEEEcCCCCEEEe-eCCcce
Confidence 776 66666666 555443221 111111 12346888888777776554 355533
|
| >3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A | Back alignment and structure |
|---|
Probab=97.88 E-value=0.0028 Score=68.66 Aligned_cols=180 Identities=10% Similarity=0.159 Sum_probs=119.6
Q ss_pred eEEEEEeCCCcEEEEECCCCeeeeEEecCCCeeEEEEecC----CC---EEEEEEc---CCeEEEEEC--CCCeEEEEEc
Q 003236 654 DLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPR----LG---RILAAAI---ENYISILDV--ETQVCRLKLQ 721 (837)
Q Consensus 654 ~llasgs~Dg~I~vwDl~t~~~i~~~~~~~~i~sl~~sp~----g~---~llags~---dg~I~iwDl--~s~~~~~~l~ 721 (837)
.++++....+.+.+||+ .|+.+..+.. +.++.+.+-|. ++ .+++... ++.|.+|++ .++. +..+.
T Consensus 41 s~ii~t~k~~gL~Vydl-~G~~l~~~~~-g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~-l~~i~ 117 (355)
T 3amr_A 41 SKLITTNKKSGLVVYSL-DGKMLHSYNT-GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGT-LQSMT 117 (355)
T ss_dssp CEEEEEETTTEEEEEET-TSCEEEEECC-SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCC-EEECS
T ss_pred cEEEEEcCCCCEEEEcC-CCcEEEEccC-CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCc-eeecc
Confidence 34656677889999999 7888888765 66777777663 22 2334443 478999977 3433 44442
Q ss_pred C------CC-CCEEEEEE--cCC-CC-EEEEEe-CCeEEEEEcCCC----CCceeEEEeecCCCceEEEEEeCCCCEEEE
Q 003236 722 G------HK-NQVHSVCW--NTS-GE-YLASVS-DELVRVWSIGSG----SKGECIHELSCTGNKFHSCVFHPTFPSLLV 785 (837)
Q Consensus 722 ~------h~-~~V~sl~~--spd-g~-~Lasgs-Dg~I~IwDl~s~----~~~~~i~~~~~~~~~I~sv~fspdg~~L~s 785 (837)
. .. ..+..+|+ ++. +. ++++.. +|.+..|++... ...+.++++.. ...+..|++.+....|++
T Consensus 118 ~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~l-gsq~EgcvvDd~~g~Lyv 196 (355)
T 3amr_A 118 DPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKM-NSQTEGMAADDEYGRLYI 196 (355)
T ss_dssp CTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEEC-SSCEEEEEEETTTTEEEE
T ss_pred ccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecC-CCCcceEEEcCCCCeEEE
Confidence 1 11 56677888 774 54 455555 899999998432 12345666654 567899999999999999
Q ss_pred EEcCCeEEEEECC-----CCcEEEeccC---CCCeeEEEEe--CCCC-EEEEEE-CCCcEEEeC
Q 003236 786 IGCYETLELWNMT-----ENKTLTLSAH---DKLVSSLAAS--TVNG-MVASAS-HDKCVKIWK 837 (837)
Q Consensus 786 gs~dg~I~IwDl~-----s~~~~~l~~h---~~~V~sla~s--pdg~-~LaSgs-~DG~I~IWd 837 (837)
+-.+..|..|+.+ +++.+...+. ...+..|++- ++++ +|++++ .+..+.|||
T Consensus 197 ~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vyd 260 (355)
T 3amr_A 197 AEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYD 260 (355)
T ss_dssp EETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEE
T ss_pred ecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEE
Confidence 9999888888865 3445543322 2468888884 4555 666665 566777775
|
| >3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ... | Back alignment and structure |
|---|
Probab=97.88 E-value=0.052 Score=68.39 Aligned_cols=272 Identities=9% Similarity=0.010 Sum_probs=152.0
Q ss_pred CCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEeccCCCCeEEEEEcCC--CCEEEEEeCCCeEEEEEcCCCC-ce
Q 003236 556 SKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPS--LSRLATSSADRTVRVWDTENPD-YS 632 (837)
Q Consensus 556 ~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~I~~l~fspd--g~~Latgs~Dg~I~IWDl~~~~-~~ 632 (837)
.+|.=..|...|..-+.+..+....+|... ++....--....--....|+.. ..-++..+ ++.++|..+++-. ..
T Consensus 652 ~pv~L~~~~~~~~~~V~a~s~rp~liy~~~-~~l~~s~l~~~~v~~~~~F~se~~~~g~v~~~-~~~LrI~~i~~~~~~~ 729 (1158)
T 3ei3_A 652 QPTVLRTFRSLSTTNVFACSDRPTVIYSSN-HKLVFSNVNLKEVNYMCPLNSDGYPDSLALAN-NSTLTIGTIDEIQKLH 729 (1158)
T ss_dssp SCCEEEEEESSSCEEEEEESSSCEEEEESS-SSEEEEEBSSSCCCEEEEECCSSSTTEEEEEC-SSCEEEEEECCSSSEE
T ss_pred CceEEEEEeeCCceeEEEECCCCEEEEEcC-CceEEeccChHHhceEeccCcccCCCcEEEEc-CCceEEEEecccCCee
Confidence 345444444444433333344555555433 2322221111122234445432 23344443 4568988876432 22
Q ss_pred eEEeeccccceEEEEEcCCCCeEEEEEeC------------------------------------------------CCc
Q 003236 633 LRTFTGHSTTVMSLDFHPSKEDLLCSCDN------------------------------------------------NSE 664 (837)
Q Consensus 633 ~~~~~~h~~~V~sl~fspdg~~llasgs~------------------------------------------------Dg~ 664 (837)
++.+. -...+..++++|..+.+++.++. -+.
T Consensus 730 ~~~ip-L~~Tprri~y~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~s~ 808 (1158)
T 3ei3_A 730 IRTVP-LYESPRKICYQEVSQCFGVLSSRIEVQDTSGGTTALRPSASTQALSSSVSSSKLFSSSTAPHETSFGEEVEVHN 808 (1158)
T ss_dssp EEEEE-CSSEEEEEEEEGGGTEEEEEEEEEEEECSSSSEEESSCCHHHHCSEEEECCCCCC----------CCCEEEEEE
T ss_pred EEEEe-CCCCceEEEEcCCCCEEEEEEEeccccccccccchhhhhhhhhhhhhcccccccccccccCchhhcCCceeeEE
Confidence 33332 34567788888776654443321 124
Q ss_pred EEEEECCCCeeeeEEecCC--CeeEEEEec---C-CCEEEEEEc----------CCeEEEEECCCCeEEEEE-cCCCCCE
Q 003236 665 IRYWSINNGSCAGVFKCQS--GATQMRFQP---R-LGRILAAAI----------ENYISILDVETQVCRLKL-QGHKNQV 727 (837)
Q Consensus 665 I~vwDl~t~~~i~~~~~~~--~i~sl~~sp---~-g~~llags~----------dg~I~iwDl~s~~~~~~l-~~h~~~V 727 (837)
|+++|..+.+.+..+.... .+.+++... + ..++++|+. .|.|++|++..++..... ...++.|
T Consensus 809 i~lidp~t~~~i~~~~l~~nE~~~sv~~v~~~~~~~~~lvVGTa~~~~~e~~~~~Gri~vf~v~~~kL~lv~~~~v~g~v 888 (1158)
T 3ei3_A 809 LLIIDQHTFEVLHAHQFLQNEYALSLVSCKLGKDPNTYFIVGTAMVYPEEAEPKQGRIVVFQYSDGKLQTVAEKEVKGAV 888 (1158)
T ss_dssp EEEEETTTCCEEEEEECCTTEEEEEEEEECCTTCCCCEEEEEEEECCTTCSSCCCEEEEEEEEETTEEEEEEEEEESSCE
T ss_pred EEEEeCCCCeEEEEEeCCCCcceEEEEEEEEccCCCEEEEEEeeecCCCCCCCCceEEEEEEEECCEEEEEEEEEcCCcC
Confidence 7778888777776666533 345554322 2 467877772 478999998755332222 1246789
Q ss_pred EEEEEcCCCCEEEEEeCCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEE--ECCCCcEEEe
Q 003236 728 HSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELW--NMTENKTLTL 805 (837)
Q Consensus 728 ~sl~~spdg~~LasgsDg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fspdg~~L~sgs~dg~I~Iw--Dl~s~~~~~l 805 (837)
++++-- +| +|+++-..+|+||++....... ....... .+..+.....+.+|++|.....|.++ +...++...+
T Consensus 889 ~al~~~-~g-~Lla~ig~~l~vy~l~~~~~L~--~~~~~~~-~i~~~~l~~~~~~I~vgD~~~Sv~~~~y~~~~~~L~~~ 963 (1158)
T 3ei3_A 889 YSMVEF-NG-KLLASINSTVRLYEWTTEKELR--TECNHYN-NIMALYLKTKGDFILVGDLMRSVLLLAYKPMEGNFEEI 963 (1158)
T ss_dssp EEEEEE-TT-EEEEEETTEEEEEEECTTSCEE--EEEEECC-CSCEEEEEEETTEEEEEESSBCEEEEEEETTTTEEEEE
T ss_pred EEEeee-CC-EEEEEcCCEEEEEECCCCceEE--EEeeccc-cEEEEEEeccCCEEEEEEhhheEEEEEEEcCCCeEEEE
Confidence 888754 34 6666778899999998653222 1111111 13333343457789999988866664 5555655543
Q ss_pred --ccCCCCeeEEEEeCCCCEEEEEECCCcEEEe
Q 003236 806 --SAHDKLVSSLAASTVNGMVASASHDKCVKIW 836 (837)
Q Consensus 806 --~~h~~~V~sla~spdg~~LaSgs~DG~I~IW 836 (837)
..+...++++.+-.+ ..++.+..+|.|.+.
T Consensus 964 a~D~~~~~vta~~~ld~-~t~l~aD~~gNl~vl 995 (1158)
T 3ei3_A 964 ARDFNPNWMSAVEILDD-DNFLGAENAFNLFVC 995 (1158)
T ss_dssp EECCSCBCEEEEEEEET-TEEEEEETTSEEEEE
T ss_pred EeecccccEEEEEEEcc-CcEEEEcCCCcEEEE
Confidence 345667888888654 467778999998875
|
| >3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A* | Back alignment and structure |
|---|
Probab=97.85 E-value=0.0028 Score=69.27 Aligned_cols=195 Identities=8% Similarity=0.052 Sum_probs=112.4
Q ss_pred CeEEEEEcCCCCEEEEE------------eCCCeEEEEEcCCCCceeE--Eeec-----cccceEEEEEcC--CCC-eEE
Q 003236 599 WITDVRFSPSLSRLATS------------SADRTVRVWDTENPDYSLR--TFTG-----HSTTVMSLDFHP--SKE-DLL 656 (837)
Q Consensus 599 ~I~~l~fspdg~~Latg------------s~Dg~I~IWDl~~~~~~~~--~~~~-----h~~~V~sl~fsp--dg~-~ll 656 (837)
...++...++|..++++ ..+|.|.++|..+...... .+.+ .......|.+.+ ++. +++
T Consensus 51 G~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~ 130 (355)
T 3sre_A 51 GSEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLL 130 (355)
T ss_dssp CCCEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEE
T ss_pred CcceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEE
Confidence 34566666665444443 2689999999974322122 2222 234667788766 344 344
Q ss_pred EEEeC--CCcEEEEECCCC--eee--eEEec--CCCeeEEEEecCCCEEEEEE-----------------cCCeEEEEEC
Q 003236 657 CSCDN--NSEIRYWSINNG--SCA--GVFKC--QSGATQMRFQPRLGRILAAA-----------------IENYISILDV 711 (837)
Q Consensus 657 asgs~--Dg~I~vwDl~t~--~~i--~~~~~--~~~i~sl~~sp~g~~llags-----------------~dg~I~iwDl 711 (837)
++-.. +..|.+|++... ... ..+.. -...+.+.+.++|..+++.. ..+.|+.||.
T Consensus 131 Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~ 210 (355)
T 3sre_A 131 VVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSP 210 (355)
T ss_dssp EEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECT
T ss_pred EEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEEC
Confidence 44333 457777776543 222 22222 23478899999877655543 1245666666
Q ss_pred CCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEe--CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeC-CCCEEEEEEc
Q 003236 712 ETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS--DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHP-TFPSLLVIGC 788 (837)
Q Consensus 712 ~s~~~~~~l~~h~~~V~sl~~spdg~~Lasgs--Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fsp-dg~~L~sgs~ 788 (837)
..-+ . +...-...+.|+|+||++.|+++. .+.|..|++...........+ ........+++.+ +|.+.+++..
T Consensus 211 ~~~~--~-~~~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~-~~~g~PDGi~vD~e~G~lwva~~~ 286 (355)
T 3sre_A 211 NDVR--V-VAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVL-SFDTLVDNISVDPVTGDLWVGCHP 286 (355)
T ss_dssp TCCE--E-EEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEE-ECSSEEEEEEECTTTCCEEEEEES
T ss_pred CeEE--E-eecCCcccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEecCEEE-eCCCCCceEEEeCCCCcEEEEecC
Confidence 4222 1 222234578999999999888776 779999999743222223333 2356678899999 5886665553
Q ss_pred CC-eEEEEEC
Q 003236 789 YE-TLELWNM 797 (837)
Q Consensus 789 dg-~I~IwDl 797 (837)
++ .|..||.
T Consensus 287 ~g~~v~~~~P 296 (355)
T 3sre_A 287 NGMRIFFYDA 296 (355)
T ss_dssp CHHHHHSCCT
T ss_pred CceEEEEECC
Confidence 43 4444443
|
| >2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis} | Back alignment and structure |
|---|
Probab=97.83 E-value=0.0063 Score=65.33 Aligned_cols=209 Identities=10% Similarity=0.049 Sum_probs=133.9
Q ss_pred eccCCCCeEEEEEcCCCCEEEEEe-CCCeEEEEEcCCCCceeEEeec----c--ccceEEEEE---cCCCCeEEEEEe--
Q 003236 593 LEEHTQWITDVRFSPSLSRLATSS-ADRTVRVWDTENPDYSLRTFTG----H--STTVMSLDF---HPSKEDLLCSCD-- 660 (837)
Q Consensus 593 l~~h~~~I~~l~fspdg~~Latgs-~Dg~I~IWDl~~~~~~~~~~~~----h--~~~V~sl~f---spdg~~llasgs-- 660 (837)
+....-.-.+++|++....|+.++ ..++|..||...+......+.+ . ...+..|.| .|+ ..++++..
T Consensus 8 ~~~~~~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~-grL~vv~~~~ 86 (334)
T 2p9w_A 8 VKVKNLTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNS-KRLFAVMKNA 86 (334)
T ss_dssp ECCTTCCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSC-CEEEEEEEET
T ss_pred ecCcccCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCC-CcEEEEEccc
Confidence 444455667899988666666666 7999999999855432222222 1 114579999 688 44555443
Q ss_pred -----------CCCcEEEEECC---CCeeeeEEecC--------------CCeeEEEEecCCCEEEEEEcC-CeEEEEEC
Q 003236 661 -----------NNSEIRYWSIN---NGSCAGVFKCQ--------------SGATQMRFQPRLGRILAAAIE-NYISILDV 711 (837)
Q Consensus 661 -----------~Dg~I~vwDl~---t~~~i~~~~~~--------------~~i~sl~~sp~g~~llags~d-g~I~iwDl 711 (837)
.+..|..||+. +++.+...... .....++..++|+.+++++.. +.|..++.
T Consensus 87 ~af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~p 166 (334)
T 2p9w_A 87 KSFNFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSA 166 (334)
T ss_dssp TTTCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECT
T ss_pred ccccccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeC
Confidence 25779999999 88887766631 247789999999999999998 99988888
Q ss_pred CCCeEEEEE-cC----CCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEee-c---CCCceEEE-EEeCCC
Q 003236 712 ETQVCRLKL-QG----HKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELS-C---TGNKFHSC-VFHPTF 780 (837)
Q Consensus 712 ~s~~~~~~l-~~----h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~-~---~~~~I~sv-~fspdg 780 (837)
........+ .. .....+.|+++|++.+|++.. .+.|..+|+...... .+..-. + .......+ ..-.+|
T Consensus 167 dG~~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~pv~~-~v~~~~~G~~~~~~~~dgilp~~~~G 245 (334)
T 2p9w_A 167 DGKTVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSKPYAW-PEPVKINGDFGTLSGTEKIVTVPVGN 245 (334)
T ss_dssp TSCCEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSSSSCC-CEECEESSCCCCCTTEEEEEEEEETT
T ss_pred CCCEEeeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCCCcce-eecccccCCcccccCcccccccccCC
Confidence 754322222 11 122367999999999888887 889999999843110 122110 1 11223443 444567
Q ss_pred CEEEEEE-cCCeEEEEECCCCcEE
Q 003236 781 PSLLVIG-CYETLELWNMTENKTL 803 (837)
Q Consensus 781 ~~L~sgs-~dg~I~IwDl~s~~~~ 803 (837)
+.++++. ..+.+.+.+.+..+..
T Consensus 246 ~vllV~~~~~~~~~l~S~DgW~sa 269 (334)
T 2p9w_A 246 ESVLVGARAPYAISFRSWDNWKSA 269 (334)
T ss_dssp EEEEEEEETTEEEEEECSSTTSEE
T ss_pred EEEEEEcCCCCEEEEECCCCccee
Confidence 7755554 4556666666655443
|
| >2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=97.82 E-value=0.0044 Score=67.65 Aligned_cols=224 Identities=12% Similarity=0.061 Sum_probs=123.6
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCc-eeEEe---eccccceEEEEEcCC---CCeEEEEEeCC-----CcE
Q 003236 598 QWITDVRFSPSLSRLATSSADRTVRVWDTENPDY-SLRTF---TGHSTTVMSLDFHPS---KEDLLCSCDNN-----SEI 665 (837)
Q Consensus 598 ~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~~~~-~~~~~---~~h~~~V~sl~fspd---g~~llasgs~D-----g~I 665 (837)
.....++|.|+|++ +++..+|.|++++ . +.. .+..+ .........|+|+|+ +..++++.... ..|
T Consensus 31 ~~P~~ia~~pdG~l-~V~e~~g~I~~i~-~-g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v 107 (352)
T 2ism_A 31 EVPWALAFLPDGGM-LIAERPGRIRLFR-E-GRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQV 107 (352)
T ss_dssp SCEEEEEECTTSCE-EEEETTTEEEEEE-T-TEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEE
T ss_pred CCceEEEEcCCCeE-EEEeCCCeEEEEE-C-CCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccEE
Confidence 45679999999985 4455679999998 3 321 11111 112356889999998 55566555433 678
Q ss_pred EEEECCCCee-----e-eEEec----CCCeeEEEEecCCCEEEEEEc-------------CCeEEEEECCCC--------
Q 003236 666 RYWSINNGSC-----A-GVFKC----QSGATQMRFQPRLGRILAAAI-------------ENYISILDVETQ-------- 714 (837)
Q Consensus 666 ~vwDl~t~~~-----i-~~~~~----~~~i~sl~~sp~g~~llags~-------------dg~I~iwDl~s~-------- 714 (837)
..|+...+.. + ..+.. ......++|.|++..+++.+. .+.|..+|....
T Consensus 108 ~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG~~p~~npf~ 187 (352)
T 2ism_A 108 VRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTGEVYERELAQDLASLGGKILRLTPEGEPAPGNPFL 187 (352)
T ss_dssp EEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECCCTTCGGGGGCTTCSSSEEEEECTTSSBCTTCTTT
T ss_pred EEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEECCCCCCccccCCCCCceEEEEEcCCCCCCCCCccc
Confidence 8888775421 1 11221 113468999999865555432 146666666531
Q ss_pred ------eEEEEEcCCCCCEEEEEEcC-CCCEEEEEe-CCeE------EEEEcCCCCC---------------ceeEEEee
Q 003236 715 ------VCRLKLQGHKNQVHSVCWNT-SGEYLASVS-DELV------RVWSIGSGSK---------------GECIHELS 765 (837)
Q Consensus 715 ------~~~~~l~~h~~~V~sl~~sp-dg~~Lasgs-Dg~I------~IwDl~s~~~---------------~~~i~~~~ 765 (837)
..+.. .++ .....++|+| ++.++++-. .+.+ .|.-+..+.. ...+..+
T Consensus 188 ~~~~~~~~i~a-~G~-rnp~g~a~d~~~g~l~v~d~g~~~~~~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~- 264 (352)
T 2ism_A 188 GRRGARPEVYS-LGH-RNPQGLAWHPKTGELFSSEHGPSGEQGYGHDEVNLIVPGGNYGWPRVVGRGNDPRYRDPLYFW- 264 (352)
T ss_dssp TCTTSCTTEEE-ECC-SEECCCEECTTTCCEEEEEECC------CCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEEC-
T ss_pred CCCCCCccEEE-EcC-CCcccEEEECCCCCEEEEEcCCCCCCCCCCeEEEEeccCCcCCCCcccCCCCCCCCcCCeEec-
Confidence 11111 122 2356789999 667666544 2221 2333332220 0122222
Q ss_pred cCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCc-------EEEeccCCCCeeEEEEeCCCCEEEEEE
Q 003236 766 CTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENK-------TLTLSAHDKLVSSLAASTVNGMVASAS 828 (837)
Q Consensus 766 ~~~~~I~sv~fspdg~~L~sgs~dg~I~IwDl~s~~-------~~~l~~h~~~V~sla~spdg~~LaSgs 828 (837)
........++| .++..+++.-..+.|...++.... ...+......+..+++.|||.++++..
T Consensus 265 ~~~~ap~G~~~-~~G~l~v~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~pdG~lyv~~~ 333 (352)
T 2ism_A 265 PQGFPPGNLAF-FRGDLYVAGLRGQALLRLVLEGERGRWRVLRVETALSGFGRLREVQVGPDGALYVTTS 333 (352)
T ss_dssp TTCCCEEEEEE-ETTEEEEEETTTTEEEEEEEEEETTEEEEEEEEEEEESSCCEEEEEECTTSCEEEEEC
T ss_pred CCCCCCcceEE-ECCEEEEEECCCCEEEEEEECCCCcceeecchheecccCCCeeEEEECCCCcEEEEEe
Confidence 12234566777 355544443345578877775432 122223346789999999998777664
|
| >3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A | Back alignment and structure |
|---|
Probab=97.82 E-value=0.05 Score=65.45 Aligned_cols=267 Identities=8% Similarity=0.045 Sum_probs=156.0
Q ss_pred CCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEe-cc----CCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCC
Q 003236 556 SKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTL-EE----HTQWITDVRFSPSLSRLATSSADRTVRVWDTENPD 630 (837)
Q Consensus 556 ~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l-~~----h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~~~ 630 (837)
..|.++....+|.+.+ |+.+ -|..|+..+.+..... .. ....|.++....++..|..|+. +-|..+|..+..
T Consensus 146 ~~i~~i~~d~~g~lWi-gt~~-Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~~~~lWigt~-~Gl~~~~~~~~~ 222 (758)
T 3ott_A 146 NTIYSIIRTKDNQIYV-GTYN-GLCRYIPSNGKFEGIPLPVHSSQSNLFVNSLLEDTTRQCVWIGTE-GYLFQYFPSTGQ 222 (758)
T ss_dssp SCEEEEEECTTCCEEE-EETT-EEEEEETTTTEEEEECCCCCTTCSSCCEEEEEEETTTTEEEEEEE-EEEEEEETTTTE
T ss_pred CeEEEEEEcCCCCEEE-EeCC-CHhhCccCCCceEEecCCCccccccceeEEEEEECCCCEEEEEEC-CCCeEEcCCCCe
Confidence 4688888888887655 4544 5888888776543221 11 1234888888877776666664 458888887654
Q ss_pred ceeEEeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeeEEec--------CCCeeEEEEecCCCEEEEEEc
Q 003236 631 YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC--------QSGATQMRFQPRLGRILAAAI 702 (837)
Q Consensus 631 ~~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~--------~~~i~sl~~sp~g~~llags~ 702 (837)
.. .........|.++....++...+ |.. +-|.+++..++........ ...|.++....++. |.+|+.
T Consensus 223 ~~-~~~~l~~~~i~~i~~d~~g~lWi--gT~-~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~-lWiGT~ 297 (758)
T 3ott_A 223 IK-QTEAFHNNSIKSLALDGNGDLLA--GTD-NGLYVYHNDTTPLQHIIHDSRNIQSLTNNIIWNIFADQEHN-IWLGTD 297 (758)
T ss_dssp EE-EEEEEEEEEEEEEEECTTCCEEE--EET-TEEEEECCTTSCCEEECCCTTCTTSCSCSCEEEEEECTTCC-EEEEES
T ss_pred EE-eccCCCCCeEEEEEEcCCCCEEE--EeC-CceeEEecCCCcEEEEEcCCCCcCcCCcCeEEEEEEcCCCC-EEEEeC
Confidence 21 11111234688888887765333 443 4588898876654332211 23477777776655 555666
Q ss_pred CCeEEEEECCCCeEEEEEc-----CCCCCEEEEEEcCCCCEEEEEeCCeEEEEEcCCCCCceeEEEee-------cCCCc
Q 003236 703 ENYISILDVETQVCRLKLQ-----GHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELS-------CTGNK 770 (837)
Q Consensus 703 dg~I~iwDl~s~~~~~~l~-----~h~~~V~sl~~spdg~~LasgsDg~I~IwDl~s~~~~~~i~~~~-------~~~~~ 770 (837)
.| +.++............ .....|.++..+.+|.+.+...+ -+..++..++.... +..+. .....
T Consensus 298 ~G-l~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~D~~g~lWiGt~~-Gl~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~ 374 (758)
T 3ott_A 298 YG-ISLSRYNSALQFIPISQITGTGDGNQFYSLFRDSKGFYWFGGAN-GLIRFTDPAGERHD-AIWYRMGDKTYPLSHNR 374 (758)
T ss_dssp SS-EEEECCCC-CEEEEHHHHSCSCCCCBEEEEEECTTCCEEEEETT-EEEEESCTTSSCCC-CEEECTTCSSSCCSCSC
T ss_pred Cc-ccccccCCceeEEecccCCCCCCCceEEEEEEcCCCCEEEeeCC-cceeecccccccce-eEEeccCCcCCCCCCCc
Confidence 56 5555432211111111 12346899998888887776544 46667655432111 11111 12345
Q ss_pred eEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEEEec--c-----CCCCeeEEEEeCCCCEEEEEECCCcEEEe
Q 003236 771 FHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLS--A-----HDKLVSSLAASTVNGMVASASHDKCVKIW 836 (837)
Q Consensus 771 I~sv~fspdg~~L~sgs~dg~I~IwDl~s~~~~~l~--~-----h~~~V~sla~spdg~~LaSgs~DG~I~IW 836 (837)
|.++.-..++. |.+|+ ++-|..||..+++...+. . ....|.++....++.+.+ |+..+-|.++
T Consensus 375 v~~i~~d~~g~-lWigt-~~GL~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lWi-gT~~~Gl~~~ 444 (758)
T 3ott_A 375 IRHIYEDKEQQ-LWIAT-DGSINRYDYATRQFIHYNIVDNTGTYNTNWTYYIFEDTAGQLWI-STCLGGIFVV 444 (758)
T ss_dssp EEEEEECTTSC-EEEEE-TTEEEEEETTTTEEEEEEEECCC--CBSSSEEEEEECTTSEEEE-EESSSCEEEE
T ss_pred eEEEEECCCCC-EEEEe-CCcHhhcCcCCCcEEEeecCCCcCCCCCceEEEEEEcCCCCEEE-EECCCceEEE
Confidence 88888888876 55566 567999999888765332 1 234588888777776554 5554445554
|
| >2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.80 E-value=0.0023 Score=67.63 Aligned_cols=228 Identities=9% Similarity=0.055 Sum_probs=117.9
Q ss_pred CCCEEEEEE-CC-----CcEEEEeCCCCeEEEE--eccCCCCeEEEEEcCCCCEEEEEeCC-----CeEEEEEcCCCC--
Q 003236 566 DGKLLATGG-HD-----KKAVLWCTESFTVKST--LEEHTQWITDVRFSPSLSRLATSSAD-----RTVRVWDTENPD-- 630 (837)
Q Consensus 566 dg~~Lasgs-~D-----g~I~VWd~~t~~~~~~--l~~h~~~I~~l~fspdg~~Latgs~D-----g~I~IWDl~~~~-- 630 (837)
++.+++.|+ .+ ..+.+||..+.+-... +.........+. .++.+++.|+.+ ..+.+||+.+..
T Consensus 14 ~~~i~~~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~ 91 (301)
T 2vpj_A 14 NEVLLVVGGFGSQQSPIDVVEKYDPKTQEWSFLPSITRKRRYVASVS--LHDRIYVIGGYDGRSRLSSVECLDYTADEDG 91 (301)
T ss_dssp CEEEEEECCEETTTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEE--ETTEEEEECCBCSSCBCCCEEEEETTCCTTC
T ss_pred CCEEEEEeCccCCCcceeEEEEEcCCCCeEEeCCCCChhhccccEEE--ECCEEEEEcCCCCCccCceEEEEECCCCCCC
Confidence 445666666 32 3688999887654432 111111122222 256777777755 468999998766
Q ss_pred -ceeEE-eeccccceEEEEEcCCCCeEEEEEeCC-----CcEEEEECCCCeeeeEEecCCC--eeEEEEecCCCEEEEEE
Q 003236 631 -YSLRT-FTGHSTTVMSLDFHPSKEDLLCSCDNN-----SEIRYWSINNGSCAGVFKCQSG--ATQMRFQPRLGRILAAA 701 (837)
Q Consensus 631 -~~~~~-~~~h~~~V~sl~fspdg~~llasgs~D-----g~I~vwDl~t~~~i~~~~~~~~--i~sl~~sp~g~~llags 701 (837)
..... +.........+.+ + +.+++.|+.+ ..+.+||+.+.+-...-..... -.+++. .++..++.|+
T Consensus 92 ~W~~~~~~p~~r~~~~~~~~--~-~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG 167 (301)
T 2vpj_A 92 VWYSVAPMNVRRGLAGATTL--G-DMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGAGLVV-ASGVIYCLGG 167 (301)
T ss_dssp CCEEECCCSSCCBSCEEEEE--T-TEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBSCEEEE-ETTEEEEECC
T ss_pred eeEECCCCCCCccceeEEEE--C-CEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCcccceEEE-ECCEEEEECC
Confidence 32221 1111111222222 3 4566677643 3688999988765443332221 122222 2556666666
Q ss_pred cC-----CeEEEEECCCCeEEEE--EcCCCCCEEEEEEcCCCCEEEEEe-C-----CeEEEEEcCCCCCceeEEEeecCC
Q 003236 702 IE-----NYISILDVETQVCRLK--LQGHKNQVHSVCWNTSGEYLASVS-D-----ELVRVWSIGSGSKGECIHELSCTG 768 (837)
Q Consensus 702 ~d-----g~I~iwDl~s~~~~~~--l~~h~~~V~sl~~spdg~~Lasgs-D-----g~I~IwDl~s~~~~~~i~~~~~~~ 768 (837)
.+ ..+.+||+.+.+-... +........++.+ ++++++.|+ + ..|.+||+.+.. ...+..+....
T Consensus 168 ~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~-W~~~~~~p~~r 244 (301)
T 2vpj_A 168 YDGLNILNSVEKYDPHTGHWTNVTPMATKRSGAGVALL--NDHIYVVGGFDGTAHLSSVEAYNIRTDS-WTTVTSMTTPR 244 (301)
T ss_dssp BCSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTE-EEEECCCSSCC
T ss_pred CCCCcccceEEEEeCCCCcEEeCCCCCcccccceEEEE--CCEEEEEeCCCCCcccceEEEEeCCCCc-EEECCCCCCcc
Confidence 54 4689999987643322 1111111222222 566666665 3 368999998752 12221121111
Q ss_pred CceEEEEEeCCCCEEEEEEcC-----CeEEEEECCCCcEEE
Q 003236 769 NKFHSCVFHPTFPSLLVIGCY-----ETLELWNMTENKTLT 804 (837)
Q Consensus 769 ~~I~sv~fspdg~~L~sgs~d-----g~I~IwDl~s~~~~~ 804 (837)
.....+.+ ++..++.|+.+ ..|.+||+.+.+...
T Consensus 245 ~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~ 283 (301)
T 2vpj_A 245 CYVGATVL--RGRLYAIAGYDGNSLLSSIECYDPIIDSWEV 283 (301)
T ss_dssp BSCEEEEE--TTEEEEECCBCSSSBEEEEEEEETTTTEEEE
T ss_pred cceeEEEE--CCEEEEEcCcCCCcccccEEEEcCCCCeEEE
Confidence 11222222 56666666654 368899998876553
|
| >3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A* | Back alignment and structure |
|---|
Probab=97.78 E-value=0.0098 Score=64.98 Aligned_cols=226 Identities=12% Similarity=0.067 Sum_probs=129.0
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeEEe---eccccceEEEEEcCC---CCeEEEEEeC---C----C
Q 003236 597 TQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTF---TGHSTTVMSLDFHPS---KEDLLCSCDN---N----S 663 (837)
Q Consensus 597 ~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~~~~~~~~~---~~h~~~V~sl~fspd---g~~llasgs~---D----g 663 (837)
-.....++|.|+++ |+++..+|.|+++|.. +...+..+ .........|+|+|+ +..++++... + .
T Consensus 28 l~~P~~ia~~pdG~-l~V~e~~g~I~~~d~~-G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~ 105 (354)
T 3a9g_A 28 LEVPWSIAPLGGGR-YLVTERPGRLVLISPS-GKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRN 105 (354)
T ss_dssp CSCEEEEEEEETTE-EEEEETTTEEEEECSS-CEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEE
T ss_pred CCCCeEEEEcCCCe-EEEEeCCCEEEEEeCC-CceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcce
Confidence 34578999999987 5555667999999743 32222221 112356889999997 5556655442 3 5
Q ss_pred cEEEEECCCC--e---e--e-eEEec--CCCeeEEEEecCCCEEEEEEc-------------CCeEEEEECCCC------
Q 003236 664 EIRYWSINNG--S---C--A-GVFKC--QSGATQMRFQPRLGRILAAAI-------------ENYISILDVETQ------ 714 (837)
Q Consensus 664 ~I~vwDl~t~--~---~--i-~~~~~--~~~i~sl~~sp~g~~llags~-------------dg~I~iwDl~s~------ 714 (837)
.|..|+.... . . + ..+.. ......+.|.|++..+++.+. .+.|..++....
T Consensus 106 ~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG~~p~~np 185 (354)
T 3a9g_A 106 RVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTGDAADPRLAQDLSSLAGKILRVDEEGRPPADNP 185 (354)
T ss_dssp EEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECCCTTCGGGGTCTTCCSSEEEEECTTSCCCTTSS
T ss_pred EEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEECCCCCCccccCCCCCCeEEEEEcCCCCCCCCCC
Confidence 6888887654 1 1 1 11221 123467999999876665432 246666666432
Q ss_pred ---eEEEEEcCCCCCEEEEEEcC-CCCEEEEEe--CC--eEEEEEcCCCCC---------------ceeEEEeecCCCce
Q 003236 715 ---VCRLKLQGHKNQVHSVCWNT-SGEYLASVS--DE--LVRVWSIGSGSK---------------GECIHELSCTGNKF 771 (837)
Q Consensus 715 ---~~~~~l~~h~~~V~sl~~sp-dg~~Lasgs--Dg--~I~IwDl~s~~~---------------~~~i~~~~~~~~~I 771 (837)
..+.. .++. ....++|+| ++.++++-. +. .|.+.. .+.. ...+..+.......
T Consensus 186 f~~~~i~a-~G~r-np~Gla~d~~~g~l~v~d~g~~~~dei~~i~--~G~nyGwp~~~g~~~~~~~~~p~~~~~~~~~ap 261 (354)
T 3a9g_A 186 FPNSPIWS-YGHR-NPQGIDWHRASGVMVATEHGPVGHDEVNIIL--KGGNYGWPLATGKAGRGEFVDPVIDTGSETWAP 261 (354)
T ss_dssp STTCCEEE-ECCS-CCCEEEECTTTCCEEEEECCSSSCCEEEEEC--TTCBCCTTTCCSCCCCTTSCCCSEECTTCCCCE
T ss_pred CCCCcEEE-EccC-CcceEEEeCCCCCEEEEecCCCCCcEEEEec--CCCcCCCCcccCCCCCCCCcCCEeecCCCCcCC
Confidence 11221 2333 345799999 677666544 22 344432 2210 01222221223456
Q ss_pred EEEEEe-------CCCCEEEEEEcCCeEEEEECCCC-cEE---Eec-cCCCCeeEEEEeCCCCEEEEEE
Q 003236 772 HSCVFH-------PTFPSLLVIGCYETLELWNMTEN-KTL---TLS-AHDKLVSSLAASTVNGMVASAS 828 (837)
Q Consensus 772 ~sv~fs-------pdg~~L~sgs~dg~I~IwDl~s~-~~~---~l~-~h~~~V~sla~spdg~~LaSgs 828 (837)
..++|. .++.++++.-..+.|..+++... +.. .+. .....+..|++.|||.++++..
T Consensus 262 ~G~~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~~rp~~v~~~pDG~lyv~~~ 330 (354)
T 3a9g_A 262 SGASFVHGDMFPGLRGWLLIACLRGSMLAAVNFGDNMEVRKISTFFKNVFGRLRDVVIDDDGGILISTS 330 (354)
T ss_dssp EEEEECCSSSCGGGTTEEEEEETTTTEEEEEEECGGGCEEEEEEECTTTSCCEEEEEECTTSCEEEEEC
T ss_pred cceEEECCCCCcccCCcEEEEEcCCCEEEEEEECCCCcccceeeeccCCCCCeeEEEECCCCcEEEEEe
Confidence 778883 45654444444568888888753 332 222 2245789999999998777664
|
| >2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=97.76 E-value=0.0059 Score=66.70 Aligned_cols=232 Identities=9% Similarity=0.065 Sum_probs=127.2
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCc-eeE----EeeccccceEEEEEcCC---CCeEEEEEeC-------C
Q 003236 598 QWITDVRFSPSLSRLATSSADRTVRVWDTENPDY-SLR----TFTGHSTTVMSLDFHPS---KEDLLCSCDN-------N 662 (837)
Q Consensus 598 ~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~~~~-~~~----~~~~h~~~V~sl~fspd---g~~llasgs~-------D 662 (837)
.....|+|.|+++.|+++...|.|++++...... .+. .+.........|+|+|+ +..++++-.. .
T Consensus 18 ~~P~~i~~~pdG~~l~V~e~~G~i~~~~~~g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~~~ 97 (353)
T 2g8s_A 18 DHPWALAFLPDNHGMLITLRGGELRHWQAGKGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGKAG 97 (353)
T ss_dssp SSEEEEEECSTTCCEEEEETTTEEEEEETTTEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSCEE
T ss_pred CCcEEEEEcCCCCEEEEEeCCceEEEEeCCCceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCCce
Confidence 4568999999998455556789999998542110 011 11112345689999996 5555555432 2
Q ss_pred CcEEEEECCCC--e--eee-EEec-------CCCeeEEEEecCCCEEEEEEcC--------------CeEEEEECCCC--
Q 003236 663 SEIRYWSINNG--S--CAG-VFKC-------QSGATQMRFQPRLGRILAAAIE--------------NYISILDVETQ-- 714 (837)
Q Consensus 663 g~I~vwDl~t~--~--~i~-~~~~-------~~~i~sl~~sp~g~~llags~d--------------g~I~iwDl~s~-- 714 (837)
..|..|++... . ... .+.. ......+.|.|++. |+++..+ +.|.-+|....
T Consensus 98 ~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~-Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~dG~~p 176 (353)
T 2g8s_A 98 TAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGY-LFIALGENNQRPTAQDLDKLQGKLVRLTDQGEIP 176 (353)
T ss_dssp EEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSE-EEEEECCTTCGGGGGCTTSCTTEEEEEETTSCCC
T ss_pred eEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCc-EEEEECCCCCCCccCCCCCCCeEEEEECCCCCCC
Confidence 35777776543 1 111 1111 11245799999985 4444433 46777776532
Q ss_pred ------------eEEEEEcCCCCCEEEEEEcC-CCCEEEEEe--CCeEEEEEcCCCCC----------------------
Q 003236 715 ------------VCRLKLQGHKNQVHSVCWNT-SGEYLASVS--DELVRVWSIGSGSK---------------------- 757 (837)
Q Consensus 715 ------------~~~~~l~~h~~~V~sl~~sp-dg~~Lasgs--Dg~I~IwDl~s~~~---------------------- 757 (837)
..+.. .+| .....++|+| ++.++++-. ++.=.|.-+..+..
T Consensus 177 ~~npf~~~~~~~~~i~a-~G~-rnp~gl~~d~~~g~l~~~d~g~~~~dei~~i~~G~nyGwp~~~~~~~~~~~~~~~~~~ 254 (353)
T 2g8s_A 177 DDNPFIKESGVRAEIWS-YGI-RNPQGMAMNPWSNALWLNEHGPRGGDEINIPQKGKNYGWPLATWGINYSGFKIPEAKG 254 (353)
T ss_dssp TTCTTTTSTTSCTTEEE-ECC-SEEEEEEEETTTTEEEEEEECSBSCEEEECCCTTCBCCTTTBCSSBCTTSSCCTTCCB
T ss_pred CCCCCcCCCCCCccEEE-EcC-cCccceEEECCCCCEEEEecCCCCCcEEeEeccCCcCCCCCccCCCCCCCCccCcccC
Confidence 11111 123 3467899999 566555433 22222322222111
Q ss_pred ------ceeEEEeecCCCceEEEEEeC-------CCCEEEEEEcCCeEEEEECCCCcEE---Eec-cCCCCeeEEEEeCC
Q 003236 758 ------GECIHELSCTGNKFHSCVFHP-------TFPSLLVIGCYETLELWNMTENKTL---TLS-AHDKLVSSLAASTV 820 (837)
Q Consensus 758 ------~~~i~~~~~~~~~I~sv~fsp-------dg~~L~sgs~dg~I~IwDl~s~~~~---~l~-~h~~~V~sla~spd 820 (837)
...+..+. +......++|.. ++.++++.-..+.|..+++..++.. .+. .....+..|++.||
T Consensus 255 ~~~~~~~~P~~~~~-~~~ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~pd 333 (353)
T 2g8s_A 255 EIVAGTEQPVFYWK-DSPAVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGDKVTEDGRILTDRGQRIRDVRTGPD 333 (353)
T ss_dssp SSCTTSCCCSEEES-SCCCEEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEESGGGCCCEEEEEECTT
T ss_pred CCCCCccCCeEEeC-CCcCcceeEEECCccCcccCCcEEEEEccCCEEEEEEeCCCeEeeeEEcccCCCCceeEEEECCC
Confidence 01111121 123466777764 3555554445668888888766544 222 23457999999999
Q ss_pred CCEEEEEE-CCCcE
Q 003236 821 NGMVASAS-HDKCV 833 (837)
Q Consensus 821 g~~LaSgs-~DG~I 833 (837)
|.++++.. .+|.|
T Consensus 334 G~lyv~td~~~g~I 347 (353)
T 2g8s_A 334 GYLYVLTDESSGEL 347 (353)
T ss_dssp SCEEEEECSTTEEE
T ss_pred CcEEEEEeCCCCEE
Confidence 98766543 45554
|
| >1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1 | Back alignment and structure |
|---|
Probab=97.72 E-value=0.034 Score=61.53 Aligned_cols=234 Identities=13% Similarity=0.175 Sum_probs=156.1
Q ss_pred EEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeEEeecc
Q 003236 560 SCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGH 639 (837)
Q Consensus 560 sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~~~~~~~~~~~h 639 (837)
+.-.+|..+.||.-. ..++.|||+++...+..+.-. ..|..=.|-.+ +.|+..+ +..|+-|+++....+.+.+..|
T Consensus 70 sAIMnP~~~iiALra-g~~lQiFnle~K~klks~~~~-e~VvfWkWis~-~~l~lVT-~taVyHWsi~~~s~P~kvFdR~ 145 (494)
T 1bpo_A 70 SAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMT-DDVTFWKWISL-NTVALVT-DNAVYHWSMEGESQPVKMFDRH 145 (494)
T ss_dssp EEEECSSSSCEEEEE-TTEEEEEETTTTEEEEEEECS-SCCCEEEEEET-TEEEEEC-SSEEEEEESSSSCCCEEEEECC
T ss_pred eeeeCCCCcEEEEec-CCeEEEEchHHhhhhcceecC-CCceEEEecCC-CeEEEEc-CCeeEEecccCCCCchhheecc
Confidence 355677777777765 679999999999888887644 45666667644 3455443 5689999998766777777776
Q ss_pred c----cceEEEEEcCCCCeEEEEEe------CCCcEEEEECCCCeeeeEEecCCCeeE-EEEecCC----CEEEEEE-c-
Q 003236 640 S----TTVMSLDFHPSKEDLLCSCD------NNSEIRYWSINNGSCAGVFKCQSGATQ-MRFQPRL----GRILAAA-I- 702 (837)
Q Consensus 640 ~----~~V~sl~fspdg~~llasgs------~Dg~I~vwDl~t~~~i~~~~~~~~i~s-l~~sp~g----~~llags-~- 702 (837)
. ..|.....+++.+.++++|- -.|.+.+|..+.+.. ..+.. ...+ ..+-.+| ..+++-. .
T Consensus 146 ~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~s-Q~ieG--haa~F~~~~~~g~~~~~~lf~fa~r~ 222 (494)
T 1bpo_A 146 SSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVS-QPIEG--HAASFAQFKMEGNAEESTLFCFAVRG 222 (494)
T ss_dssp GGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTCCE-EEECC--SEEEEEEEECTTCSSEEEEEEEEECS
T ss_pred hhcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeecccccc-chhee--eeeeeEEEecCCCCCCceEEEEEEec
Confidence 4 46777788899888887663 246788888875432 22221 1111 1111111 1233322 2
Q ss_pred --CCeEEEEECCCC--------eEEEE-EcC---CCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecC
Q 003236 703 --ENYISILDVETQ--------VCRLK-LQG---HKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCT 767 (837)
Q Consensus 703 --dg~I~iwDl~s~--------~~~~~-l~~---h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~ 767 (837)
.+.+.|.++... +.... +.. -.+-..++..++.-.+++..+ -|.|++||+.++ .++..-...
T Consensus 223 ~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~kygviyviTK~G~i~lyDleTg---t~i~~nrIs 299 (494)
T 1bpo_A 223 QAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETG---TCIYMNRIS 299 (494)
T ss_dssp TTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTC---CEEEEEECC
T ss_pred CCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecccCCEEEEEecCceEEEEecccc---eeeeeeccc
Confidence 278999988542 11111 111 234556788888777777777 999999999999 788887777
Q ss_pred CCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE
Q 003236 768 GNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL 803 (837)
Q Consensus 768 ~~~I~sv~fspdg~~L~sgs~dg~I~IwDl~s~~~~ 803 (837)
...|...+.+....-+++....|.|.-..+++..++
T Consensus 300 ~~~iF~t~~~~~~~Gi~~Vnr~GqVl~v~v~e~~iv 335 (494)
T 1bpo_A 300 GETIFVTAPHEATAGIIGVNRKGQVLSVCVEEENII 335 (494)
T ss_dssp SSCEEEEEEETTTTEEEEEETTCEEEEEEECTTTHH
T ss_pred CCceEEecccCCCCcEEEEccCceEEEEEEccccch
Confidence 888877777777777888888888877777666544
|
| >2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=97.70 E-value=0.007 Score=66.08 Aligned_cols=226 Identities=13% Similarity=0.081 Sum_probs=124.0
Q ss_pred CeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEe-------ccCCCCeEEEEEcCC---CCEEEEEeC--------C
Q 003236 557 KVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTL-------EEHTQWITDVRFSPS---LSRLATSSA--------D 618 (837)
Q Consensus 557 ~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l-------~~h~~~I~~l~fspd---g~~Latgs~--------D 618 (837)
.-..|+|.|||+.|+++...|.|++++.. +.....+ .........|+|+|+ +..|+++.. .
T Consensus 19 ~P~~i~~~pdG~~l~V~e~~G~i~~~~~~-g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~~~ 97 (353)
T 2g8s_A 19 HPWALAFLPDNHGMLITLRGGELRHWQAG-KGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGKAG 97 (353)
T ss_dssp SEEEEEECSTTCCEEEEETTTEEEEEETT-TEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSCEE
T ss_pred CcEEEEEcCCCCEEEEEeCCceEEEEeCC-CceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCCce
Confidence 46799999999834455678999999853 3322111 122345789999996 555555432 2
Q ss_pred CeEEEEEcCCCCce---eE-Eeec------cccceEEEEEcCCCCeEEEEEeC-------------CCcEEEEECCCCe-
Q 003236 619 RTVRVWDTENPDYS---LR-TFTG------HSTTVMSLDFHPSKEDLLCSCDN-------------NSEIRYWSINNGS- 674 (837)
Q Consensus 619 g~I~IWDl~~~~~~---~~-~~~~------h~~~V~sl~fspdg~~llasgs~-------------Dg~I~vwDl~t~~- 674 (837)
..|..|++...... .. .+.. .......|+|.|+|. |+++.+. .|.|.-++....-
T Consensus 98 ~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~-Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~dG~~p 176 (353)
T 2g8s_A 98 TAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGY-LFIALGENNQRPTAQDLDKLQGKLVRLTDQGEIP 176 (353)
T ss_dssp EEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSE-EEEEECCTTCGGGGGCTTSCTTEEEEEETTSCCC
T ss_pred eEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCc-EEEEECCCCCCCccCCCCCCCeEEEEECCCCCCC
Confidence 35666776543111 11 1111 112245799999985 4444432 2467777765320
Q ss_pred -----------eeeEEe-cCCCeeEEEEecCCCEEEEEEcCC----eEEEEECCC-------------------------
Q 003236 675 -----------CAGVFK-CQSGATQMRFQPRLGRILAAAIEN----YISILDVET------------------------- 713 (837)
Q Consensus 675 -----------~i~~~~-~~~~i~sl~~sp~g~~llags~dg----~I~iwDl~s------------------------- 713 (837)
....+. .......++|.+..+.|+++.... .|.+.....
T Consensus 177 ~~npf~~~~~~~~~i~a~G~rnp~gl~~d~~~g~l~~~d~g~~~~dei~~i~~G~nyGwp~~~~~~~~~~~~~~~~~~~~ 256 (353)
T 2g8s_A 177 DDNPFIKESGVRAEIWSYGIRNPQGMAMNPWSNALWLNEHGPRGGDEINIPQKGKNYGWPLATWGINYSGFKIPEAKGEI 256 (353)
T ss_dssp TTCTTTTSTTSCTTEEEECCSEEEEEEEETTTTEEEEEEECSBSCEEEECCCTTCBCCTTTBCSSBCTTSSCCTTCCBSS
T ss_pred CCCCCcCCCCCCccEEEEcCcCccceEEECCCCCEEEEecCCCCCcEEeEeccCCcCCCCCccCCCCCCCCccCcccCCC
Confidence 122222 234477899999656676665532 232221100
Q ss_pred ----CeEEEEEcCCCCCEEEEEEcC-------CCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCC
Q 003236 714 ----QVCRLKLQGHKNQVHSVCWNT-------SGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFP 781 (837)
Q Consensus 714 ----~~~~~~l~~h~~~V~sl~~sp-------dg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fspdg~ 781 (837)
..++..+. +...+..++|.. ++.++++.. .+.|...++..+........+......+..+++.|||.
T Consensus 257 ~~~~~~P~~~~~-~~~ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~pdG~ 335 (353)
T 2g8s_A 257 VAGTEQPVFYWK-DSPAVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGDKVTEDGRILTDRGQRIRDVRTGPDGY 335 (353)
T ss_dssp CTTSCCCSEEES-SCCCEEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEESGGGCCCEEEEEECTTSC
T ss_pred CCCccCCeEEeC-CCcCcceeEEECCccCcccCCcEEEEEccCCEEEEEEeCCCeEeeeEEcccCCCCceeEEEECCCCc
Confidence 01122222 234567788864 456666554 77888888875421111111223345789999999998
Q ss_pred EEEE
Q 003236 782 SLLV 785 (837)
Q Consensus 782 ~L~s 785 (837)
.+++
T Consensus 336 lyv~ 339 (353)
T 2g8s_A 336 LYVL 339 (353)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 4443
|
| >1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1 | Back alignment and structure |
|---|
Probab=97.70 E-value=0.11 Score=57.62 Aligned_cols=248 Identities=9% Similarity=0.145 Sum_probs=152.1
Q ss_pred CCcEEEEeCCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeEEeeccccceEEEEEcCCCCeE
Q 003236 576 DKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDL 655 (837)
Q Consensus 576 Dg~I~VWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~sl~fspdg~~l 655 (837)
+..|.|.|+.+...+.+-.- .--+.-.+|..+.||.-. ..++.|||+++.. .++.+.-. ..|.-=.|-.+.. +
T Consensus 47 ~~~vvIiDl~~~~~~~rrpi---~AdsAIMnP~~~iiALra-g~~lQiFnle~K~-klks~~~~-e~VvfWkWis~~~-l 119 (494)
T 1bpo_A 47 QAQVVIIDMNDPSNPIRRPI---SADSAIMNPASKVIALKA-GKTLQIFNIEMKS-KMKAHTMT-DDVTFWKWISLNT-V 119 (494)
T ss_dssp CCEEEEEETTSTTSCEEEEC---CCSEEEECSSSSCEEEEE-TTEEEEEETTTTE-EEEEEECS-SCCCEEEEEETTE-E
T ss_pred CCeEEEEECCCCCcceeccc---ccceeeeCCCCcEEEEec-CCeEEEEchHHhh-hhcceecC-CCceEEEecCCCe-E
Confidence 34788899887544322111 112344677777777665 7799999999854 35555533 3455556654432 3
Q ss_pred EEEEeCCCcEEEEECCC-CeeeeEEec-----CCCeeEEEEecCCCEEEEEEc-------CCeEEEEECCCCeEEEEEcC
Q 003236 656 LCSCDNNSEIRYWSINN-GSCAGVFKC-----QSGATQMRFQPRLGRILAAAI-------ENYISILDVETQVCRLKLQG 722 (837)
Q Consensus 656 lasgs~Dg~I~vwDl~t-~~~i~~~~~-----~~~i~sl~~sp~g~~llags~-------dg~I~iwDl~s~~~~~~l~~ 722 (837)
. ..+ +..|+-|++.. ..+++.|.. ...|.....+++.++++..+- .|.+.+|..+.+. -..+.+
T Consensus 120 ~-lVT-~taVyHWsi~~~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~-sQ~ieG 196 (494)
T 1bpo_A 120 A-LVT-DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKV-SQPIEG 196 (494)
T ss_dssp E-EEC-SSEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTCC-EEEECC
T ss_pred E-EEc-CCeeEEecccCCCCchhheecchhcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeeccccc-cchhee
Confidence 3 332 67899999974 356666654 344777888899998776553 3678899988653 345667
Q ss_pred CCCCEEEEEEcCCC---CEEEEEe----CCeEEEEEcCCCC---C---ceeEEEeec---CCCceEEEEEeCCCCEEEEE
Q 003236 723 HKNQVHSVCWNTSG---EYLASVS----DELVRVWSIGSGS---K---GECIHELSC---TGNKFHSCVFHPTFPSLLVI 786 (837)
Q Consensus 723 h~~~V~sl~~spdg---~~Lasgs----Dg~I~IwDl~s~~---~---~~~i~~~~~---~~~~I~sv~fspdg~~L~sg 786 (837)
|......+.+..+. .+++.+. .+.++|.++.... . .+.+..+-. ...-..++.+++....++..
T Consensus 197 haa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~kygviyvi 276 (494)
T 1bpo_A 197 HAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLI 276 (494)
T ss_dssp SEEEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTTTEEEEE
T ss_pred eeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecccCCEEEEE
Confidence 76555444433211 2444444 2689999996541 0 111111111 13345678899999999999
Q ss_pred EcCCeEEEEECCCCcEEE-eccCCCCeeEEEEeCCCCEEEEEECCCcE
Q 003236 787 GCYETLELWNMTENKTLT-LSAHDKLVSSLAASTVNGMVASASHDKCV 833 (837)
Q Consensus 787 s~dg~I~IwDl~s~~~~~-l~~h~~~V~sla~spdg~~LaSgs~DG~I 833 (837)
+..|.|++||+.++.++. -.-....|..-+-+....=++.....|.|
T Consensus 277 TK~G~i~lyDleTgt~i~~nrIs~~~iF~t~~~~~~~Gi~~Vnr~GqV 324 (494)
T 1bpo_A 277 TKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAGIIGVNRKGQV 324 (494)
T ss_dssp ETTSEEEEEETTTCCEEEEEECCSSCEEEEEEETTTTEEEEEETTCEE
T ss_pred ecCceEEEEecccceeeeeecccCCceEEecccCCCCcEEEEccCceE
Confidence 999999999999999883 33344555555544444434444455554
|
| >3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor} | Back alignment and structure |
|---|
Probab=97.68 E-value=0.029 Score=60.95 Aligned_cols=232 Identities=12% Similarity=0.090 Sum_probs=131.1
Q ss_pred eccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCce-eEEe----eccccceEEEEEcCC---CCeEEEEE--eCC
Q 003236 593 LEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYS-LRTF----TGHSTTVMSLDFHPS---KEDLLCSC--DNN 662 (837)
Q Consensus 593 l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~~~~~-~~~~----~~h~~~V~sl~fspd---g~~llasg--s~D 662 (837)
+...-...+.|+|.|+|.++++--..|.|++++..++... +..+ .........|+|+|+ +..++++- ..+
T Consensus 27 va~gL~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~ 106 (347)
T 3das_A 27 VATGLNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASD 106 (347)
T ss_dssp EECCCSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSS
T ss_pred eecCCCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCCC
Confidence 3334456789999999987776655899999987654421 1111 223456789999995 34444432 245
Q ss_pred CcEEEEECCCC----------eeee-EEec--CCCeeEEEEecCCCEEEEEEc-------------CCeEEEEECCCC--
Q 003236 663 SEIRYWSINNG----------SCAG-VFKC--QSGATQMRFQPRLGRILAAAI-------------ENYISILDVETQ-- 714 (837)
Q Consensus 663 g~I~vwDl~t~----------~~i~-~~~~--~~~i~sl~~sp~g~~llags~-------------dg~I~iwDl~s~-- 714 (837)
+.|.-|.+..+ +.+. .+.. ......+.|.|++..+++.+. .|.|.-++....
T Consensus 107 ~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~dG~ip 186 (347)
T 3das_A 107 NRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTGESGDTGLSQDRKSLGGKILRMTPDGEPA 186 (347)
T ss_dssp EEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECBCTTCGGGTTCTTCSTTCEEEECTTSSBC
T ss_pred CEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEECCCCCCccccCCCCCCCEEEEEeCCCCcc
Confidence 56777766542 1111 1111 223457999999876666542 356666665532
Q ss_pred -------eEEEEEcCCCCCEEEEEEcCCCCEEEEEe--CCeEEEEEcCCCCC---------------ceeEEEeecCCCc
Q 003236 715 -------VCRLKLQGHKNQVHSVCWNTSGEYLASVS--DELVRVWSIGSGSK---------------GECIHELSCTGNK 770 (837)
Q Consensus 715 -------~~~~~l~~h~~~V~sl~~spdg~~Lasgs--Dg~I~IwDl~s~~~---------------~~~i~~~~~~~~~ 770 (837)
..+.. .+|. ....++|+|+|.++++-. |+.-.|.-+..+.. ...+..+..+...
T Consensus 187 ~~nPf~~~~i~a-~G~R-Np~Gla~dp~G~L~~~d~g~~~~deln~i~~G~nyGwP~~~g~~~~~~~~~P~~~~~~~~~a 264 (347)
T 3das_A 187 PGNPFPGSPVYS-YGHR-NVQGLAWDDKQRLFASEFGQDTWDELNAIKPGDNYGWPEAEGKGGGSGFHDPVAQWSTDEAS 264 (347)
T ss_dssp TTCSSTTCCEEE-BCCS-BCCEEEECTTCCEEEEECCSSSCEEEEEECTTCBCCTTTCCSSCCCTTCCCCSEEECTTTCC
T ss_pred CCCCCCCCeEEe-eCCC-CcceEEECCCCCEEEEecCCCCCceeeEEcCCCEecCCcccCCCCCccccCCcEecCCCCCC
Confidence 11221 2443 355799999988777654 44333333333211 0112222222234
Q ss_pred eEEEEEeCCCCEEEEEEc-CCeEEEEECCCCcE----E-EeccCCCCeeEEEEeCCCCEEEEEE
Q 003236 771 FHSCVFHPTFPSLLVIGC-YETLELWNMTENKT----L-TLSAHDKLVSSLAASTVNGMVASAS 828 (837)
Q Consensus 771 I~sv~fspdg~~L~sgs~-dg~I~IwDl~s~~~----~-~l~~h~~~V~sla~spdg~~LaSgs 828 (837)
...++|.. +. ++.+.. .+.|..+.+..... . .+.+....+.+|+..|||.++++.+
T Consensus 265 p~G~~~~~-g~-~~~~~l~~~~l~~v~~~~~~~~~~~e~~l~~~~gR~~dv~~~pDG~lyv~td 326 (347)
T 3das_A 265 PSGIAYAE-GS-VWMAGLRGERLWRIPLKGTAAAADPQAFLEGEYGRLRTVAPAGGDKLWLVTS 326 (347)
T ss_dssp EEEEEEET-TE-EEEEESTTCSEEEEEEETTEESSCCEEESTTTSSCEEEEEEEETTEEEEEEC
T ss_pred CcceEEEc-Cc-eeeccccCCEEEEEEecCCceecceEEeecCCCCCccEEEECCCCcEEEEEc
Confidence 56677763 43 444444 44676666655432 1 2333456899999999998777654
|
| >3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ... | Back alignment and structure |
|---|
Probab=97.65 E-value=0.047 Score=68.81 Aligned_cols=272 Identities=12% Similarity=0.080 Sum_probs=147.6
Q ss_pred CCCeEEEEEcCC------CCEEEEEEC-CCcEEEEeCCCCeEEEEecc-CCCCeEEEEEc--CCCCEEEEEeCCCeEEEE
Q 003236 555 TSKVESCHFSPD------GKLLATGGH-DKKAVLWCTESFTVKSTLEE-HTQWITDVRFS--PSLSRLATSSADRTVRVW 624 (837)
Q Consensus 555 ~~~V~sl~fSpd------g~~Lasgs~-Dg~I~VWd~~t~~~~~~l~~-h~~~I~~l~fs--pdg~~Latgs~Dg~I~IW 624 (837)
...|.|+++.+. +.++|+|.. |++|+|+++.+.+.+....- ......++.+. ....+|..|-.||.+..+
T Consensus 553 ~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l~~~~~~~L~~~~~p~si~l~~~~~~~~L~igl~dG~l~~~ 632 (1158)
T 3ei3_A 553 EHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFELLHKEMLGGEIIPRSILMTTFESSHYLLCALGDGALFYF 632 (1158)
T ss_dssp SSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTTCCEEEEEECCSSCCEEEEEEEEETTEEEEEEEETTSEEEEE
T ss_pred CCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCCCCeEEEEECCCCCCCcEEEEEEeCCCcEEEEEeCCCeEEEE
Confidence 457999999863 369999997 99999999998776644321 11233444333 234578899999998776
Q ss_pred EcCC--CCcee--EEeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeeEEecCCCee-EEEEecC--CCEE
Q 003236 625 DTEN--PDYSL--RTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGAT-QMRFQPR--LGRI 697 (837)
Q Consensus 625 Dl~~--~~~~~--~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~~~~i~-sl~~sp~--g~~l 697 (837)
.++. +...- ..+.| ..++.-..|...+..-+++++ +....+|.-. ++....--....+. ...|+.. .+-+
T Consensus 633 ~~d~~tg~l~d~r~~~LG-~~pv~L~~~~~~~~~~V~a~s-~rp~liy~~~-~~l~~s~l~~~~v~~~~~F~se~~~~g~ 709 (1158)
T 3ei3_A 633 GLNIETGLLSDRKKVTLG-TQPTVLRTFRSLSTTNVFACS-DRPTVIYSSN-HKLVFSNVNLKEVNYMCPLNSDGYPDSL 709 (1158)
T ss_dssp EECTTTCCEEEEEEEECC-SSCCEEEEEESSSCEEEEEES-SSCEEEEESS-SSEEEEEBSSSCCCEEEEECCSSSTTEE
T ss_pred EEcCCCCccccceeEEcC-CCceEEEEEeeCCceeEEEEC-CCCEEEEEcC-CceEEeccChHHhceEeccCcccCCCcE
Confidence 6653 32211 12333 345544444444443443444 3444444433 33221111112232 3334332 1234
Q ss_pred EEEEcCCeEEEEECCCC--eEEEEEcCCCCCEEEEEEcCCCCEEEEEe-C------------------------------
Q 003236 698 LAAAIENYISILDVETQ--VCRLKLQGHKNQVHSVCWNTSGEYLASVS-D------------------------------ 744 (837)
Q Consensus 698 lags~dg~I~iwDl~s~--~~~~~l~~h~~~V~sl~~spdg~~Lasgs-D------------------------------ 744 (837)
+. ..++.++|..+.+- -.+.++. -...+..++++|+.+.++++. +
T Consensus 710 v~-~~~~~LrI~~i~~~~~~~~~~ip-L~~Tprri~y~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 787 (1158)
T 3ei3_A 710 AL-ANNSTLTIGTIDEIQKLHIRTVP-LYESPRKICYQEVSQCFGVLSSRIEVQDTSGGTTALRPSASTQALSSSVSSSK 787 (1158)
T ss_dssp EE-ECSSCEEEEEECCSSSEEEEEEE-CSSEEEEEEEEGGGTEEEEEEEEEEEECSSSSEEESSCCHHHHCSEEEECCCC
T ss_pred EE-EcCCceEEEEecccCCeeEEEEe-CCCCceEEEEcCCCCEEEEEEEeccccccccccchhhhhhhhhhhhhcccccc
Confidence 43 34556888776532 2333333 345677888888766544432 1
Q ss_pred -------------------CeEEEEEcCCCCCceeEEEeecCC-CceEEEE---EeCC-CCEEEEEE----------cCC
Q 003236 745 -------------------ELVRVWSIGSGSKGECIHELSCTG-NKFHSCV---FHPT-FPSLLVIG----------CYE 790 (837)
Q Consensus 745 -------------------g~I~IwDl~s~~~~~~i~~~~~~~-~~I~sv~---fspd-g~~L~sgs----------~dg 790 (837)
..|+++|-.+. +.+..+.-.. ..+.+++ |..+ ..+|++|+ ..|
T Consensus 788 ~~~~~~~~~~~~~g~~~~~s~i~lidp~t~---~~i~~~~l~~nE~~~sv~~v~~~~~~~~~lvVGTa~~~~~e~~~~~G 864 (1158)
T 3ei3_A 788 LFSSSTAPHETSFGEEVEVHNLLIIDQHTF---EVLHAHQFLQNEYALSLVSCKLGKDPNTYFIVGTAMVYPEEAEPKQG 864 (1158)
T ss_dssp CC----------CCCEEEEEEEEEEETTTC---CEEEEEECCTTEEEEEEEEECCTTCCCCEEEEEEEECCTTCSSCCCE
T ss_pred cccccccCchhhcCCceeeEEEEEEeCCCC---eEEEEEeCCCCcceEEEEEEEEccCCCEEEEEEeeecCCCCCCCCce
Confidence 13555555444 3333333222 2234443 3322 46788887 246
Q ss_pred eEEEEECCCCcEE--EeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 003236 791 TLELWNMTENKTL--TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 837 (837)
Q Consensus 791 ~I~IwDl~s~~~~--~l~~h~~~V~sla~spdg~~LaSgs~DG~I~IWd 837 (837)
.|++|++.++++. .....+++|++++-- +|++||+. ..+|+||+
T Consensus 865 ri~vf~v~~~kL~lv~~~~v~g~v~al~~~-~g~Lla~i--g~~l~vy~ 910 (1158)
T 3ei3_A 865 RIVVFQYSDGKLQTVAEKEVKGAVYSMVEF-NGKLLASI--NSTVRLYE 910 (1158)
T ss_dssp EEEEEEEETTEEEEEEEEEESSCEEEEEEE-TTEEEEEE--TTEEEEEE
T ss_pred EEEEEEEECCEEEEEEEEEcCCcCEEEeee-CCEEEEEc--CCEEEEEE
Confidence 8999998765544 333557889998854 35444433 46788875
|
| >3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.61 E-value=0.011 Score=62.40 Aligned_cols=227 Identities=8% Similarity=0.021 Sum_probs=116.6
Q ss_pred CEEEEEEC--CCcEEEEeCCCCeEEEE--eccCCCCeEEEEEcCCCCEEEEEeCC----CeEEEEEcCCCCceeEEeecc
Q 003236 568 KLLATGGH--DKKAVLWCTESFTVKST--LEEHTQWITDVRFSPSLSRLATSSAD----RTVRVWDTENPDYSLRTFTGH 639 (837)
Q Consensus 568 ~~Lasgs~--Dg~I~VWd~~t~~~~~~--l~~h~~~I~~l~fspdg~~Latgs~D----g~I~IWDl~~~~~~~~~~~~h 639 (837)
.+++.|+. ...+.+||..+.+-... +.........+.+ ++.+++.|+.+ ..+.+||+.+.......-...
T Consensus 13 ~l~~~GG~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~ 90 (306)
T 3ii7_A 13 YRIALFGGSQPQSCRYFNPKDYSWTDIRCPFEKRRDAACVFW--DNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPT 90 (306)
T ss_dssp EEEEEECCSSTTSEEEEETTTTEEEECCCCSCCCBSCEEEEE--TTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSS
T ss_pred eEEEEeCCCCCceEEEecCCCCCEecCCCCCcccceeEEEEE--CCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCc
Confidence 35556654 35789999887654422 1111112222222 56677777755 678899998765422211111
Q ss_pred ccceEEEEEcCCCCeEEEEEeCC------CcEEEEECCCCeeeeEEecCCC--eeEEEEecCCCEEEEEEc---------
Q 003236 640 STTVMSLDFHPSKEDLLCSCDNN------SEIRYWSINNGSCAGVFKCQSG--ATQMRFQPRLGRILAAAI--------- 702 (837)
Q Consensus 640 ~~~V~sl~fspdg~~llasgs~D------g~I~vwDl~t~~~i~~~~~~~~--i~sl~~sp~g~~llags~--------- 702 (837)
...-.+++.. ++.+++.|+.+ ..+.+||+.+.+-...-..... -.+++. .++..++.|+.
T Consensus 91 ~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~ 167 (306)
T 3ii7_A 91 PRDSLAACAA--EGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSHGMVE-ANGLIYVCGGSLGNNVSGRV 167 (306)
T ss_dssp CCBSCEEEEE--TTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBSCEEEE-ETTEEEEECCEESCTTTCEE
T ss_pred cccceeEEEE--CCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCcceeEEEE-ECCEEEEECCCCCCCCcccc
Confidence 1111122222 34566677654 4689999988764443222111 122222 24555555553
Q ss_pred CCeEEEEECCCCeEEEEEcC-CCCCEEEEEEcCCCCEEEEEe-C-----CeEEEEEcCCCCCceeEEEeecCCCceEEEE
Q 003236 703 ENYISILDVETQVCRLKLQG-HKNQVHSVCWNTSGEYLASVS-D-----ELVRVWSIGSGSKGECIHELSCTGNKFHSCV 775 (837)
Q Consensus 703 dg~I~iwDl~s~~~~~~l~~-h~~~V~sl~~spdg~~Lasgs-D-----g~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~ 775 (837)
...+.+||+.+.+-...-.. ....-.+++.. ++++++.|+ + ..|.+||+.+.. ...+..+.........+.
T Consensus 168 ~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~i~v~GG~~~~~~~~~~~~yd~~~~~-W~~~~~~p~~r~~~~~~~ 245 (306)
T 3ii7_A 168 LNSCEVYDPATETWTELCPMIEARKNHGLVFV-KDKIFAVGGQNGLGGLDNVEYYDIKLNE-WKMVSPMPWKGVTVKCAA 245 (306)
T ss_dssp CCCEEEEETTTTEEEEECCCSSCCBSCEEEEE-TTEEEEECCEETTEEBCCEEEEETTTTE-EEECCCCSCCBSCCEEEE
T ss_pred cceEEEeCCCCCeEEECCCccchhhcceEEEE-CCEEEEEeCCCCCCCCceEEEeeCCCCc-EEECCCCCCCccceeEEE
Confidence 34588999988743322111 11111122222 566666655 2 368999988752 112211211112222233
Q ss_pred EeCCCCEEEEEEcC-----CeEEEEECCCCcEE
Q 003236 776 FHPTFPSLLVIGCY-----ETLELWNMTENKTL 803 (837)
Q Consensus 776 fspdg~~L~sgs~d-----g~I~IwDl~s~~~~ 803 (837)
+ ++..+++|+.+ ..|.+||+.+.+..
T Consensus 246 ~--~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~ 276 (306)
T 3ii7_A 246 V--GSIVYVLAGFQGVGRLGHILEYNTETDKWV 276 (306)
T ss_dssp E--TTEEEEEECBCSSSBCCEEEEEETTTTEEE
T ss_pred E--CCEEEEEeCcCCCeeeeeEEEEcCCCCeEE
Confidence 3 56666777644 47899999887755
|
| >1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A | Back alignment and structure |
|---|
Probab=97.61 E-value=0.0001 Score=88.37 Aligned_cols=214 Identities=8% Similarity=0.019 Sum_probs=128.5
Q ss_pred CCCeEEEEEcCCCCceeEEeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCC----CeeeeEEec-CCCeeEEEEe
Q 003236 617 ADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN----GSCAGVFKC-QSGATQMRFQ 691 (837)
Q Consensus 617 ~Dg~I~IWDl~~~~~~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t----~~~i~~~~~-~~~i~sl~~s 691 (837)
..+.|++.++..... ..+......+..|+|++.+..++++-...+.|+.+++.. ......+.. ......+++.
T Consensus 384 ~~~~I~~id~~~~~~--~~~~~~~~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD 461 (699)
T 1n7d_A 384 NRHEVRKMTLDRSEY--TSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVD 461 (699)
T ss_dssp CTTC-CEECTTSCCE--ECCSCCCTTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECC
T ss_pred CccceEEEeCCCCcc--eeeeccCcceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEE
Confidence 345788888876543 222223345778999988777777766678999999875 222222211 1235567888
Q ss_pred cCCCEEEEEE-cCCeEEEEECCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEe--C-CeEEEEEcCCCCCceeEEEeecC
Q 003236 692 PRLGRILAAA-IENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS--D-ELVRVWSIGSGSKGECIHELSCT 767 (837)
Q Consensus 692 p~g~~llags-~dg~I~iwDl~s~~~~~~l~~h~~~V~sl~~spdg~~Lasgs--D-g~I~IwDl~s~~~~~~i~~~~~~ 767 (837)
+.++.|+++. ..+.|.++++........+.........|+++|.+.+|+.+. . +.|.++++..... .. .+...
T Consensus 462 ~~~g~LY~tD~~~~~I~v~d~dg~~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~-~~--l~~~~ 538 (699)
T 1n7d_A 462 WIHSNIYWTDSVLGTVSVADTKGVKRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDI-YS--LVTEN 538 (699)
T ss_dssp CSSSBCEECCTTTSCEEEEBSSSCCEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCC-CE--ESCSS
T ss_pred eeCCcEEEEeccCCeEEEEecCCCceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCe-eE--EEeCC
Confidence 6666666554 457899999886654444433334567889999766555544 3 6788877754321 11 11122
Q ss_pred CCceEEEEEeCCCCEEEEEEc-CCeEEEEECCCCcEEEecc---CCCCeeEEEEeCCCCEEEEEECCCcEEEe
Q 003236 768 GNKFHSCVFHPTFPSLLVIGC-YETLELWNMTENKTLTLSA---HDKLVSSLAASTVNGMVASASHDKCVKIW 836 (837)
Q Consensus 768 ~~~I~sv~fspdg~~L~sgs~-dg~I~IwDl~s~~~~~l~~---h~~~V~sla~spdg~~LaSgs~DG~I~IW 836 (837)
......++|++++..|+++.. .+.|.++++.......+.. .......|++..+ .++++....+.|..+
T Consensus 539 l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~~~P~glavd~~-~lywtd~~~~~V~~~ 610 (699)
T 1n7d_A 539 IQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFED-KVFWTDIINEAIFSA 610 (699)
T ss_dssp CSSCCCEEECTTTCCEEEEETTTTEEEEECSSSSCCEEECCCSSSCSSCCCCEEETT-EEEEECSTTTCEEEE
T ss_pred CCCccEEEEeccCCEEEEEecCCCeEEEEccCCCceEEEEecCCcCCCceEeEEECC-EEEEEeCCCCeEEEE
Confidence 344567999998777777765 4589999997654443322 2233456666543 344444455666654
|
| >2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.53 E-value=0.0081 Score=63.41 Aligned_cols=229 Identities=10% Similarity=0.043 Sum_probs=115.2
Q ss_pred CCEEEEEECC----CcEEEEeCCCCeEEEE--eccCCCCeEEEEEcCCCCEEEEEeCC-----CeEEEEEcCCCCceeEE
Q 003236 567 GKLLATGGHD----KKAVLWCTESFTVKST--LEEHTQWITDVRFSPSLSRLATSSAD-----RTVRVWDTENPDYSLRT 635 (837)
Q Consensus 567 g~~Lasgs~D----g~I~VWd~~t~~~~~~--l~~h~~~I~~l~fspdg~~Latgs~D-----g~I~IWDl~~~~~~~~~ 635 (837)
+.+++.|+.+ ..+.+||..+.+-... +......-..+.+ ++.+++.|+.+ ..+.+||..+.......
T Consensus 16 ~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~ 93 (302)
T 2xn4_A 16 KLMVVVGGQAPKAIRSVECYDFKEERWHQVAELPSRRCRAGMVYM--AGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVA 93 (302)
T ss_dssp EEEEEECCBSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEESCBCSSSBCCCEEEEETTTTEEEEEC
T ss_pred CEEEEECCCCCCCCCcEEEEcCcCCcEeEcccCCcccccceEEEE--CCEEEEEeCcCCCccccceEEECCCCCceeeCC
Confidence 4455556543 3588899887654332 1111111122222 56677777754 35888998876532211
Q ss_pred eeccccceEEEEEcCCCCeEEEEEeCCC-----cEEEEECCCCeeeeEEecCCC--eeEEEEecCCCEEEEEEc------
Q 003236 636 FTGHSTTVMSLDFHPSKEDLLCSCDNNS-----EIRYWSINNGSCAGVFKCQSG--ATQMRFQPRLGRILAAAI------ 702 (837)
Q Consensus 636 ~~~h~~~V~sl~fspdg~~llasgs~Dg-----~I~vwDl~t~~~i~~~~~~~~--i~sl~~sp~g~~llags~------ 702 (837)
-......-.+++.. + +.+++.|+.++ .+.+||+.+.+-...-..... -.+++. .++..++.|+.
T Consensus 94 ~~p~~r~~~~~~~~-~-~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~ 170 (302)
T 2xn4_A 94 NMRDRRSTLGAAVL-N-GLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRRSSVGVGV-VGGLLYAVGGYDVASRQ 170 (302)
T ss_dssp CCSSCCBSCEEEEE-T-TEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSSCCBSCEEEE-ETTEEEEECCEETTTTE
T ss_pred CCCccccceEEEEE-C-CEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCCcccCceEEE-ECCEEEEEeCCCCCCCc
Confidence 11111111222222 3 45666666543 578899887764443222111 122222 24455555554
Q ss_pred -CCeEEEEECCCCeEEEE--EcCCCCCEEEEEEcCCCCEEEEEe-C-----CeEEEEEcCCCCCceeEEEeecCCCceEE
Q 003236 703 -ENYISILDVETQVCRLK--LQGHKNQVHSVCWNTSGEYLASVS-D-----ELVRVWSIGSGSKGECIHELSCTGNKFHS 773 (837)
Q Consensus 703 -dg~I~iwDl~s~~~~~~--l~~h~~~V~sl~~spdg~~Lasgs-D-----g~I~IwDl~s~~~~~~i~~~~~~~~~I~s 773 (837)
...+.+||+.+.+-... +.........+.+ ++++++.|+ + ..+.+||+.+.. ...+......... ..
T Consensus 171 ~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~-W~~~~~~~~~r~~-~~ 246 (302)
T 2xn4_A 171 CLSTVECYNATTNEWTYIAEMSTRRSGAGVGVL--NNLLYAVGGHDGPLVRKSVEVYDPTTNA-WRQVADMNMCRRN-AG 246 (302)
T ss_dssp ECCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCBSSSSBCCCEEEEETTTTE-EEEECCCSSCCBS-CE
T ss_pred cccEEEEEeCCCCcEEECCCCccccccccEEEE--CCEEEEECCCCCCcccceEEEEeCCCCC-EeeCCCCCCcccc-Ce
Confidence 24588999987643322 2111111222222 566666665 3 368999987752 1122111111111 12
Q ss_pred EEEeCCCCEEEEEEcCC-----eEEEEECCCCcEEEe
Q 003236 774 CVFHPTFPSLLVIGCYE-----TLELWNMTENKTLTL 805 (837)
Q Consensus 774 v~fspdg~~L~sgs~dg-----~I~IwDl~s~~~~~l 805 (837)
++. -++..+++|+.++ .|.+||+.+.+...+
T Consensus 247 ~~~-~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~ 282 (302)
T 2xn4_A 247 VCA-VNGLLYVVGGDDGSCNLASVEYYNPTTDKWTVV 282 (302)
T ss_dssp EEE-ETTEEEEECCBCSSSBCCCEEEEETTTTEEEEC
T ss_pred EEE-ECCEEEEECCcCCCcccccEEEEcCCCCeEEEC
Confidence 222 2566666666553 589999998876654
|
| >3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor} | Back alignment and structure |
|---|
Probab=97.49 E-value=0.055 Score=58.74 Aligned_cols=237 Identities=8% Similarity=0.052 Sum_probs=126.5
Q ss_pred EEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEE--EEe----ccCCCCeEEEEEcCC---CCEEEEE---
Q 003236 548 FQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVK--STL----EEHTQWITDVRFSPS---LSRLATS--- 615 (837)
Q Consensus 548 ~~~l~~H~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~~--~~l----~~h~~~I~~l~fspd---g~~Latg--- 615 (837)
+.++-..-..-+.|+|.|||++|++--..|.|++++..+++.. ..+ .........|+|+|+ +.+|++.
T Consensus 24 ~~~va~gL~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~ 103 (347)
T 3das_A 24 LRTVATGLNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTS 103 (347)
T ss_dssp EEEEECCCSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEEC
T ss_pred eEEeecCCCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEec
Confidence 3344444556789999999997776654899999986655442 222 123566899999995 4445443
Q ss_pred eCCCeEEEEEcCCCC---------c-eeEEee-ccccceEEEEEcCCCCeEEEEEe------------CCCcEEEEECCC
Q 003236 616 SADRTVRVWDTENPD---------Y-SLRTFT-GHSTTVMSLDFHPSKEDLLCSCD------------NNSEIRYWSINN 672 (837)
Q Consensus 616 s~Dg~I~IWDl~~~~---------~-~~~~~~-~h~~~V~sl~fspdg~~llasgs------------~Dg~I~vwDl~t 672 (837)
..++.|.-|.+.... . .+..+. ........|.|.|+|..++.+|+ ..|.|.-++...
T Consensus 104 ~~~~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~dG 183 (347)
T 3das_A 104 ASDNRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTGESGDTGLSQDRKSLGGKILRMTPDG 183 (347)
T ss_dssp SSSEEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECBCTTCGGGTTCTTCSTTCEEEECTTS
T ss_pred CCCCEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEECCCCCCccccCCCCCCCEEEEEeCCC
Confidence 245567667665411 1 111121 11123467999999864443332 135555555542
Q ss_pred Ce-------eeeEEe-cCCCeeEEEEecCCCEEEEEEc--CC--eEEEEECC--------CC--------eEEEEEcCCC
Q 003236 673 GS-------CAGVFK-CQSGATQMRFQPRLGRILAAAI--EN--YISILDVE--------TQ--------VCRLKLQGHK 724 (837)
Q Consensus 673 ~~-------~i~~~~-~~~~i~sl~~sp~g~~llags~--dg--~I~iwDl~--------s~--------~~~~~l~~h~ 724 (837)
.- ....+. .......++|+|++. |+++.. ++ .|.+.... .+ .++..+..+.
T Consensus 184 ~ip~~nPf~~~~i~a~G~RNp~Gla~dp~G~-L~~~d~g~~~~deln~i~~G~nyGwP~~~g~~~~~~~~~P~~~~~~~~ 262 (347)
T 3das_A 184 EPAPGNPFPGSPVYSYGHRNVQGLAWDDKQR-LFASEFGQDTWDELNAIKPGDNYGWPEAEGKGGGSGFHDPVAQWSTDE 262 (347)
T ss_dssp SBCTTCSSTTCCEEEBCCSBCCEEEECTTCC-EEEEECCSSSCEEEEEECTTCBCCTTTCCSSCCCTTCCCCSEEECTTT
T ss_pred CccCCCCCCCCeEEeeCCCCcceEEECCCCC-EEEEecCCCCCceeeEEcCCCEecCCcccCCCCCccccCCcEecCCCC
Confidence 20 011222 233467899999754 444443 22 23332110 00 1122332222
Q ss_pred CCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCC-ceeEEEeecCCCceEEEEEeCCCCEEEEE
Q 003236 725 NQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSK-GECIHELSCTGNKFHSCVFHPTFPSLLVI 786 (837)
Q Consensus 725 ~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~-~~~i~~~~~~~~~I~sv~fspdg~~L~sg 786 (837)
.....++|. ++.+++..- ...|....+..... .+....+......+..++..|||..+++.
T Consensus 263 ~ap~G~~~~-~g~~~~~~l~~~~l~~v~~~~~~~~~~~e~~l~~~~gR~~dv~~~pDG~lyv~t 325 (347)
T 3das_A 263 ASPSGIAYA-EGSVWMAGLRGERLWRIPLKGTAAAADPQAFLEGEYGRLRTVAPAGGDKLWLVT 325 (347)
T ss_dssp CCEEEEEEE-TTEEEEEESTTCSEEEEEEETTEESSCCEEESTTTSSCEEEEEEEETTEEEEEE
T ss_pred CCCcceEEE-cCceeeccccCCEEEEEEecCCceecceEEeecCCCCCccEEEECCCCcEEEEE
Confidence 356677776 455555444 55666666654321 11222333344678899999998644443
|
| >3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A* | Back alignment and structure |
|---|
Probab=97.46 E-value=0.13 Score=55.90 Aligned_cols=201 Identities=13% Similarity=0.123 Sum_probs=120.5
Q ss_pred EEecCCCCCeEEEEEcCCCCEEEEE------------ECCCcEEEEeCCC--CeEE-EEecc-----CCCCeEEEEEcC-
Q 003236 549 QLIPASTSKVESCHFSPDGKLLATG------------GHDKKAVLWCTES--FTVK-STLEE-----HTQWITDVRFSP- 607 (837)
Q Consensus 549 ~~l~~H~~~V~sl~fSpdg~~Lasg------------s~Dg~I~VWd~~t--~~~~-~~l~~-----h~~~I~~l~fsp- 607 (837)
..+++-......+++.++|..++++ ..+|.|.++|.++ .+.. ..+.+ ..-....|.+.+
T Consensus 43 ~~i~~~~~G~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d 122 (355)
T 3sre_A 43 NLVKGIDNGSEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFID 122 (355)
T ss_dssp EECTTCCSCCCEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEEC
T ss_pred EEeCCCCCCcceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEEC
Confidence 3344423345667788887554444 1689999999873 2322 12222 223567777765
Q ss_pred -CCC-EEEEEeC---CCeEEEEEcCCCCcee---EEeecc-ccceEEEEEcCCCCeEEEEEe-----------------C
Q 003236 608 -SLS-RLATSSA---DRTVRVWDTENPDYSL---RTFTGH-STTVMSLDFHPSKEDLLCSCD-----------------N 661 (837)
Q Consensus 608 -dg~-~Latgs~---Dg~I~IWDl~~~~~~~---~~~~~h-~~~V~sl~fspdg~~llasgs-----------------~ 661 (837)
++. +|+++.. +.+|.+|+++...... ..+.+. -...+.+.+.++|. ++++.. .
T Consensus 123 ~dg~~~L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~-fyvt~~~~ftd~~~~~~e~~~~~~ 201 (355)
T 3sre_A 123 DDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEH-FYATNDHYFIDPYLKSWEMHLGLA 201 (355)
T ss_dssp TTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTE-EEEEESCSCSSHHHHHHHHHTTCC
T ss_pred CCCcEEEEEEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCC-EEecCCcEeCCcccccchhhccCC
Confidence 354 4555432 5688888887643322 223222 24578999999876 444543 1
Q ss_pred CCcEEEEECCCCeeeeEEecCCCeeEEEEecCCCEEEEEEc-CCeEEEEECCC-Ce--EEEEEcCCCCCEEEEEEcC-CC
Q 003236 662 NSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAI-ENYISILDVET-QV--CRLKLQGHKNQVHSVCWNT-SG 736 (837)
Q Consensus 662 Dg~I~vwDl~t~~~i~~~~~~~~i~sl~~sp~g~~llags~-dg~I~iwDl~s-~~--~~~~l~~h~~~V~sl~~sp-dg 736 (837)
.|.|+.+|. +++......-...+.++|+|+++.++++.. .+.|..||+.. +. ....+ ........+++++ +|
T Consensus 202 ~g~vyr~d~--~~~~~~~~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~-~~~g~PDGi~vD~e~G 278 (355)
T 3sre_A 202 WSFVTYYSP--NDVRVVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVL-SFDTLVDNISVDPVTG 278 (355)
T ss_dssp CEEEEEECT--TCCEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEE-ECSSEEEEEEECTTTC
T ss_pred ccEEEEEEC--CeEEEeecCCcccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEecCEEE-eCCCCCceEEEeCCCC
Confidence 245655655 343333444456789999999999888875 58999999863 32 22233 2346678899999 59
Q ss_pred CEEEEEe-CC-eEEEEEcC
Q 003236 737 EYLASVS-DE-LVRVWSIG 753 (837)
Q Consensus 737 ~~Lasgs-Dg-~I~IwDl~ 753 (837)
.+.+++. ++ .|..|+..
T Consensus 279 ~lwva~~~~g~~v~~~~P~ 297 (355)
T 3sre_A 279 DLWVGCHPNGMRIFFYDAE 297 (355)
T ss_dssp CEEEEEESCHHHHHSCCTT
T ss_pred cEEEEecCCceEEEEECCC
Confidence 9888775 43 45545443
|
| >3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A | Back alignment and structure |
|---|
Probab=97.35 E-value=0.022 Score=64.68 Aligned_cols=257 Identities=12% Similarity=0.095 Sum_probs=150.8
Q ss_pred EEEEECCCcEEEEeCCCCeEEEEeccCC-------------------------CCeE--EEEEcC---CCCEEEEEeC-C
Q 003236 570 LATGGHDKKAVLWCTESFTVKSTLEEHT-------------------------QWIT--DVRFSP---SLSRLATSSA-D 618 (837)
Q Consensus 570 Lasgs~Dg~I~VWd~~t~~~~~~l~~h~-------------------------~~I~--~l~fsp---dg~~Latgs~-D 618 (837)
|.+|+..|.|+|+-+.+++.+..+...+ +... .+.+.. ||++|+.-.. .
T Consensus 73 f~SgG~sG~v~v~G~PSmR~l~~IpVF~~~~~~G~G~t~esk~il~~~~~~~~gD~HHp~~S~tdg~yDGrylfiNdkan 152 (638)
T 3sbq_A 73 FWSGGHQGEVRVLGVPSMRELMRIPVFNVDSATGWGLTNESRHIMGDSAKFLNGDCHHPHISMTDGKYDGKYLFINDKAN 152 (638)
T ss_dssp EEECGGGCCEEEEEETTTEEEEEECSSSCCTTTCTTTBHHHHHHHGGGGGCCCCCCCCCEEEEETTEEEEEEEEEEETTT
T ss_pred EeecCcCceEEEEecCCcceEEEeecccCCCCcccCCchhHHHHHhcCCCccCCCcCCCcccccCCeeeeEEEEEecCCC
Confidence 6788899999999999999888764211 1111 233322 5777777664 5
Q ss_pred CeEEEEEcCCCCceeEEeeccccceEEEEEc--CCCCeEEEEEe------CCCcE------------EEEECCCCeeeeE
Q 003236 619 RTVRVWDTENPDYSLRTFTGHSTTVMSLDFH--PSKEDLLCSCD------NNSEI------------RYWSINNGSCAGV 678 (837)
Q Consensus 619 g~I~IWDl~~~~~~~~~~~~h~~~V~sl~fs--pdg~~llasgs------~Dg~I------------~vwDl~t~~~i~~ 678 (837)
..|-..+++.-+............+.++.|- |+..++++.+- .||.. ...|..+.+....
T Consensus 153 ~RvAri~l~~~~~d~Ii~iPn~~~~Hg~~~~~~p~T~yv~~~~e~~~P~pndg~~~~~~~~~~y~~f~~iD~~tm~v~~Q 232 (638)
T 3sbq_A 153 SRVARIRLDIMKCDKMITVPNVQAIHGLRLQKVPHTKYVFANAEFIIPHPNDGKVFDLQDENSYTMYNAIDAETMEMAFQ 232 (638)
T ss_dssp TEEEEEETTTTEEEEEEECTTCSCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCTTSTTEEEEEEEEETTTCSEEEE
T ss_pred cceEEEECCcEeeceeEeCCCCcCcccccccccCCccEEEecceeeccCCCCCcccccCChhhceEEEEEcCCccEEEEE
Confidence 6777777776543222233345678888886 56565554431 22221 1123444444444
Q ss_pred EecCCCeeEEEEecCCCEEEEEEcCC---------------eEEEEECCC-------C--e-----EEEEEcC-------
Q 003236 679 FKCQSGATQMRFQPRLGRILAAAIEN---------------YISILDVET-------Q--V-----CRLKLQG------- 722 (837)
Q Consensus 679 ~~~~~~i~sl~~sp~g~~llags~dg---------------~I~iwDl~s-------~--~-----~~~~l~~------- 722 (837)
+........+...+++++.++.+.+. .+.++++.. + + -+..+.+
T Consensus 233 v~v~gnld~~~~~~~g~~af~t~yNsE~~~~l~em~~~e~D~~~vfn~~~ie~~vk~G~~~~~~g~gv~ViD~~~~~~~~ 312 (638)
T 3sbq_A 233 VIVDGNLDNTDADYTGRFAAATCYNSEKAFDLGGMMRNERDWVVVFDIHAVEAAVKAGDFITLGDSKTPVLDGRKKDGKD 312 (638)
T ss_dssp EEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSCEEEEEEEHHHHHHHHHTTCCBCCTTCCCCEEECSCBTTBC
T ss_pred EEcCCChhhcCCCCCCCEEEEeeeccccCcChhhcCcccccEEEEecHHHHHHHHhcCCeEEECCCCeeEEccccccccC
Confidence 44445555666677788877776532 355555421 0 0 0111211
Q ss_pred --------CCCCEEEEEEcCCCCEEEEEe--CCeEEEEEcCCC---------CCceeEEEeecCCCceEEEEEeCCCCEE
Q 003236 723 --------HKNQVHSVCWNTSGEYLASVS--DELVRVWSIGSG---------SKGECIHELSCTGNKFHSCVFHPTFPSL 783 (837)
Q Consensus 723 --------h~~~V~sl~~spdg~~Lasgs--Dg~I~IwDl~s~---------~~~~~i~~~~~~~~~I~sv~fspdg~~L 783 (837)
-....+.+.++|||+++++++ +.++.|+|++.. ....++..-...+-.....+|.++| ..
T Consensus 313 ~~~~~~iP~pksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~GlGPlHt~Fd~~G-~a 391 (638)
T 3sbq_A 313 SKFTRYVPVPKNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPELGLGPLHTTFDGRG-NA 391 (638)
T ss_dssp CSSEEEEEESSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBCCSCEEEEEECSSS-EE
T ss_pred CceEEEEeCCCCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeeccCCCcccEEEECCCC-ce
Confidence 223456788999999999988 889999999741 1112223222345667788999999 44
Q ss_pred EEEE-cCCeEEEEECCCC----------cEE-EeccCCCCeeEEEE------eCCCCEEEEEE
Q 003236 784 LVIG-CYETLELWNMTEN----------KTL-TLSAHDKLVSSLAA------STVNGMVASAS 828 (837)
Q Consensus 784 ~sgs-~dg~I~IwDl~s~----------~~~-~l~~h~~~V~sla~------spdg~~LaSgs 828 (837)
++.- -|..|..|++... .++ ++.-|-. +-.+.- .+||++|++.+
T Consensus 392 YTtlfidSqvvkWni~~a~~~~~g~~~~~v~~k~dv~Yq-pGH~~~~~get~~~dGk~lv~ln 453 (638)
T 3sbq_A 392 YTTLFIDSQVVKWNMEEAVRAYKGEKVNYIKQKLDVHYQ-PGHLHASLCETNEADGKWLVALS 453 (638)
T ss_dssp EEEETTTTEEEEEEHHHHHHHHTTCCCCCEEEEEECSSC-EEEEEETTTTSTTCCSCEEEEEE
T ss_pred EeeeeecceEEEEeccHHHHHhcCccCCeeeeccccccC-CcccccCCCccCCCCccEEEEec
Confidence 4444 6889999998643 233 4444433 223322 47888888875
|
| >2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.31 E-value=0.01 Score=62.53 Aligned_cols=215 Identities=13% Similarity=0.088 Sum_probs=106.3
Q ss_pred CCCEEEEEe-CC-----CeEEEEEcCCCCceeEE-eeccccceEEEEEcCCCCeEEEEEeCC-----CcEEEEECCCCe-
Q 003236 608 SLSRLATSS-AD-----RTVRVWDTENPDYSLRT-FTGHSTTVMSLDFHPSKEDLLCSCDNN-----SEIRYWSINNGS- 674 (837)
Q Consensus 608 dg~~Latgs-~D-----g~I~IWDl~~~~~~~~~-~~~h~~~V~sl~fspdg~~llasgs~D-----g~I~vwDl~t~~- 674 (837)
++.+++.|+ .+ ..+.+||+.+....... +.........+.+ ++.+++.|+.+ ..+.+||+.+.+
T Consensus 14 ~~~i~~~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~---~~~l~v~GG~~~~~~~~~~~~~d~~~~~~ 90 (301)
T 2vpj_A 14 NEVLLVVGGFGSQQSPIDVVEKYDPKTQEWSFLPSITRKRRYVASVSL---HDRIYVIGGYDGRSRLSSVECLDYTADED 90 (301)
T ss_dssp CEEEEEECCEETTTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEE---TTEEEEECCBCSSCBCCCEEEEETTCCTT
T ss_pred CCEEEEEeCccCCCcceeEEEEEcCCCCeEEeCCCCChhhccccEEEE---CCEEEEEcCCCCCccCceEEEEECCCCCC
Confidence 344555555 22 36888888875532211 1111111122222 24567677654 468999998766
Q ss_pred --eeeEEecCC--CeeEEEEecCCCEEEEEEcC-----CeEEEEECCCCeEE--EEEcCCCCCEEEEEEcCCCCEEEEEe
Q 003236 675 --CAGVFKCQS--GATQMRFQPRLGRILAAAIE-----NYISILDVETQVCR--LKLQGHKNQVHSVCWNTSGEYLASVS 743 (837)
Q Consensus 675 --~i~~~~~~~--~i~sl~~sp~g~~llags~d-----g~I~iwDl~s~~~~--~~l~~h~~~V~sl~~spdg~~Lasgs 743 (837)
-...-.... .-.+++. .++..++.|+.+ ..+.+||+.+.+-. ..+........++.+ ++++++.|+
T Consensus 91 ~~W~~~~~~p~~r~~~~~~~-~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG 167 (301)
T 2vpj_A 91 GVWYSVAPMNVRRGLAGATT-LGDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGAGLVVA--SGVIYCLGG 167 (301)
T ss_dssp CCCEEECCCSSCCBSCEEEE-ETTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBSCEEEEE--TTEEEEECC
T ss_pred CeeEECCCCCCCccceeEEE-ECCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCcccceEEEE--CCEEEEECC
Confidence 332222111 1122222 245556666543 46899998876433 222211112222222 566666665
Q ss_pred -C-----CeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcC-----CeEEEEECCCCcEEEeccCC-CC
Q 003236 744 -D-----ELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCY-----ETLELWNMTENKTLTLSAHD-KL 811 (837)
Q Consensus 744 -D-----g~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fspdg~~L~sgs~d-----g~I~IwDl~s~~~~~l~~h~-~~ 811 (837)
+ ..+.+||+.+.. ...+..+...... .+++. -++..+++|+.+ ..|.+||+.+.+...+.... ..
T Consensus 168 ~~~~~~~~~~~~~d~~~~~-W~~~~~~p~~r~~-~~~~~-~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r 244 (301)
T 2vpj_A 168 YDGLNILNSVEKYDPHTGH-WTNVTPMATKRSG-AGVAL-LNDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTVTSMTTPR 244 (301)
T ss_dssp BCSSCBCCCEEEEETTTTE-EEEECCCSSCCBS-CEEEE-ETTEEEEECCBCSSSBCCCEEEEETTTTEEEEECCCSSCC
T ss_pred CCCCcccceEEEEeCCCCc-EEeCCCCCccccc-ceEEE-ECCEEEEEeCCCCCcccceEEEEeCCCCcEEECCCCCCcc
Confidence 3 368999987752 1222111111111 12222 255566666654 47999999988776543211 11
Q ss_pred eeEEEEeCCCCEEEEEECCC
Q 003236 812 VSSLAASTVNGMVASASHDK 831 (837)
Q Consensus 812 V~sla~spdg~~LaSgs~DG 831 (837)
....+..-++++++.|+.++
T Consensus 245 ~~~~~~~~~~~i~v~GG~~~ 264 (301)
T 2vpj_A 245 CYVGATVLRGRLYAIAGYDG 264 (301)
T ss_dssp BSCEEEEETTEEEEECCBCS
T ss_pred cceeEEEECCEEEEEcCcCC
Confidence 11112223677777877653
|
| >1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A | Back alignment and structure |
|---|
Probab=97.29 E-value=0.011 Score=62.75 Aligned_cols=230 Identities=7% Similarity=0.006 Sum_probs=116.2
Q ss_pred CCCCEEEEEECC----CcEEEEeCCCCeEEEEe--ccCCCCeEEEEEcCCCCEEEEEeC----C-----CeEEEEEcCCC
Q 003236 565 PDGKLLATGGHD----KKAVLWCTESFTVKSTL--EEHTQWITDVRFSPSLSRLATSSA----D-----RTVRVWDTENP 629 (837)
Q Consensus 565 pdg~~Lasgs~D----g~I~VWd~~t~~~~~~l--~~h~~~I~~l~fspdg~~Latgs~----D-----g~I~IWDl~~~ 629 (837)
-++.+++.|+.+ ..+.+||..+.+-...- .........+.+ ++.+++.|+. + ..+.+||+.+.
T Consensus 23 ~~~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~ 100 (308)
T 1zgk_A 23 VGRLIYTAGGYFRQSLSYLEAYNPSNGTWLRLADLQVPRSGLAGCVV--GGLLYAVGGRNNSPDGNTDSSALDCYNPMTN 100 (308)
T ss_dssp CCCCEEEECCBSSSBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCEEEETTEEEECCCEEEEETTTT
T ss_pred CCCEEEEEeCcCCCCcceEEEEcCCCCeEeECCCCCcccccceEEEE--CCEEEEECCCcCCCCCCeecceEEEECCCCC
Confidence 356677777632 36889998876544321 111111122222 5667777765 2 46888998875
Q ss_pred CceeEE-eeccccceEEEEEcCCCCeEEEEEeCC-----CcEEEEECCCCeeeeEEecCCC--eeEEEEecCCCEEEEEE
Q 003236 630 DYSLRT-FTGHSTTVMSLDFHPSKEDLLCSCDNN-----SEIRYWSINNGSCAGVFKCQSG--ATQMRFQPRLGRILAAA 701 (837)
Q Consensus 630 ~~~~~~-~~~h~~~V~sl~fspdg~~llasgs~D-----g~I~vwDl~t~~~i~~~~~~~~--i~sl~~sp~g~~llags 701 (837)
...... +.........+.+ + +.+++.|+.+ ..+.+||+.+.+-...-..... -.+++.. ++..++.|+
T Consensus 101 ~W~~~~~~p~~r~~~~~~~~--~-~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~iyv~GG 176 (308)
T 1zgk_A 101 QWSPCAPMSVPRNRIGVGVI--D-GHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVL-NRLLYAVGG 176 (308)
T ss_dssp EEEECCCCSSCCBTCEEEEE--T-TEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEE-TTEEEEECC
T ss_pred eEeECCCCCcCccccEEEEE--C-CEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccceEEEEE-CCEEEEEeC
Confidence 532211 1111111222222 3 4566666533 4688999987764433222111 1122222 555566666
Q ss_pred cC-----CeEEEEECCCCeEEEE--EcCCCCCEEEEEEcCCCCEEEEEe-C-----CeEEEEEcCCCCCceeEEEeecCC
Q 003236 702 IE-----NYISILDVETQVCRLK--LQGHKNQVHSVCWNTSGEYLASVS-D-----ELVRVWSIGSGSKGECIHELSCTG 768 (837)
Q Consensus 702 ~d-----g~I~iwDl~s~~~~~~--l~~h~~~V~sl~~spdg~~Lasgs-D-----g~I~IwDl~s~~~~~~i~~~~~~~ 768 (837)
.+ +.+.+||+.+.+-... +........++.+ ++++++.|+ + ..+.+||+.+.. ...+..+....
T Consensus 177 ~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~-W~~~~~~p~~r 253 (308)
T 1zgk_A 177 FDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVL--HNCIYAAGGYDGQDQLNSVERYDVETET-WTFVAPMKHRR 253 (308)
T ss_dssp BCSSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTE-EEECCCCSSCC
T ss_pred CCCCCcCceEEEEeCCCCeEeeCCCCCCccccceEEEE--CCEEEEEeCCCCCCccceEEEEeCCCCc-EEECCCCCCCc
Confidence 54 4689999987643321 1111111222233 566666665 3 469999988752 11111111111
Q ss_pred CceEEEEEeCCCCEEEEEEcC-----CeEEEEECCCCcEEEe
Q 003236 769 NKFHSCVFHPTFPSLLVIGCY-----ETLELWNMTENKTLTL 805 (837)
Q Consensus 769 ~~I~sv~fspdg~~L~sgs~d-----g~I~IwDl~s~~~~~l 805 (837)
.. .+++.. ++..++.|+.+ ..|.+||+.+.+...+
T Consensus 254 ~~-~~~~~~-~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~ 293 (308)
T 1zgk_A 254 SA-LGITVH-QGRIYVLGGYDGHTFLDSVECYDPDTDTWSEV 293 (308)
T ss_dssp BS-CEEEEE-TTEEEEECCBCSSCBCCEEEEEETTTTEEEEE
T ss_pred cc-eEEEEE-CCEEEEEcCcCCCcccceEEEEcCCCCEEeec
Confidence 11 222222 55666666643 3688999988776543
|
| >4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.29 E-value=0.029 Score=59.55 Aligned_cols=228 Identities=8% Similarity=-0.016 Sum_probs=114.6
Q ss_pred EEEEEECCCcEEEEeCCCCeEEE-EeccCCCCeEEEEEcCCCCEEEEEeC-----C------CeEEEEEcCCCCceeEEe
Q 003236 569 LLATGGHDKKAVLWCTESFTVKS-TLEEHTQWITDVRFSPSLSRLATSSA-----D------RTVRVWDTENPDYSLRTF 636 (837)
Q Consensus 569 ~Lasgs~Dg~I~VWd~~t~~~~~-~l~~h~~~I~~l~fspdg~~Latgs~-----D------g~I~IWDl~~~~~~~~~~ 636 (837)
+++.|+ ..+.+||..+.+-.. .+..........+...++.+++.|+. . ..+.+||..+.......-
T Consensus 7 l~~~GG--~~~~~yd~~~~~W~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~ 84 (315)
T 4asc_A 7 IFMISE--EGAVAYDPAANECYCASLSSQVPKNHVSLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMPP 84 (315)
T ss_dssp EEEEET--TEEEEEETTTTEEEEEECCCCSCSSEEEEECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECCC
T ss_pred EEEEcC--CceEEECCCCCeEecCCCCCCCCccceEEEEECCEEEEEcCcccCCCCCccccccceEEecCCCCeEEECCC
Confidence 344555 579999998876543 22212223333334457788888874 1 137788888755321110
Q ss_pred eccccceEEEEEcCCCCeEEEEEeCC--------CcEEEEECCCCeeeeEEecCCC-eeEEEEecCCCEEEEEEc-C---
Q 003236 637 TGHSTTVMSLDFHPSKEDLLCSCDNN--------SEIRYWSINNGSCAGVFKCQSG-ATQMRFQPRLGRILAAAI-E--- 703 (837)
Q Consensus 637 ~~h~~~V~sl~fspdg~~llasgs~D--------g~I~vwDl~t~~~i~~~~~~~~-i~sl~~sp~g~~llags~-d--- 703 (837)
......-.+++.. ++.+++.|+.+ ..+.+||+.+.+-...-..... ....+...++..++.|+. +
T Consensus 85 ~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~ 162 (315)
T 4asc_A 85 LPSPRCLFGLGEA--LNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYGHTVLSHMDLVYVIGGKGSDRK 162 (315)
T ss_dssp BSSCEESCEEEEE--TTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBCTTSC
T ss_pred CCcchhceeEEEE--CCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccceeEEEECCEEEEEeCCCCCCc
Confidence 1111111122222 34566666632 4689999988754332222111 111222234556666665 2
Q ss_pred --CeEEEEECCCCeEEEE--EcCCCCCEEEEEEcCCCCEEEEEe-CC-----eEEEEEcCCCCCceeEEEeecCCCceEE
Q 003236 704 --NYISILDVETQVCRLK--LQGHKNQVHSVCWNTSGEYLASVS-DE-----LVRVWSIGSGSKGECIHELSCTGNKFHS 773 (837)
Q Consensus 704 --g~I~iwDl~s~~~~~~--l~~h~~~V~sl~~spdg~~Lasgs-Dg-----~I~IwDl~s~~~~~~i~~~~~~~~~I~s 773 (837)
+.+.+||+.+.+-... +........++.+ ++++++.|+ ++ .+.+||+.+.. ...+......... .+
T Consensus 163 ~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~-W~~~~~~p~~r~~-~~ 238 (315)
T 4asc_A 163 CLNKMCVYDPKKFEWKELAPMQTARSLFGATVH--DGRIIVAAGVTDTGLTSSAEVYSITDNK-WAPFEAFPQERSS-LS 238 (315)
T ss_dssp BCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEEEEECSSSEEEEEEEEETTTTE-EEEECCCSSCCBS-CE
T ss_pred ccceEEEEeCCCCeEEECCCCCCchhceEEEEE--CCEEEEEeccCCCCccceEEEEECCCCe-EEECCCCCCcccc-ee
Confidence 4799999987643221 1111111122222 566666665 43 58889987751 1222111111111 22
Q ss_pred EEEeCCCCEEEEEEcC--------------CeEEEEECCCCcEEEe
Q 003236 774 CVFHPTFPSLLVIGCY--------------ETLELWNMTENKTLTL 805 (837)
Q Consensus 774 v~fspdg~~L~sgs~d--------------g~I~IwDl~s~~~~~l 805 (837)
++.. ++..+++|+.+ ..|.+||+.+.+...+
T Consensus 239 ~~~~-~~~l~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~ 283 (315)
T 4asc_A 239 LVSL-VGTLYAIGGFATLETESGELVPTELNDIWRYNEEEKKWEGV 283 (315)
T ss_dssp EEEE-TTEEEEEEEEEEEECTTSCEEEEEEEEEEEEETTTTEEEEE
T ss_pred EEEE-CCEEEEECCccccCcCCccccccccCcEEEecCCCChhhhh
Confidence 2222 55666666653 2478899988876544
|
| >2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.24 E-value=0.019 Score=60.55 Aligned_cols=213 Identities=9% Similarity=0.050 Sum_probs=105.0
Q ss_pred CEEEEEeCC----CeEEEEEcCCCCceeEEeeccccceEEEEEcCCCCeEEEEEeCC-----CcEEEEECCCCeeeeEEe
Q 003236 610 SRLATSSAD----RTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN-----SEIRYWSINNGSCAGVFK 680 (837)
Q Consensus 610 ~~Latgs~D----g~I~IWDl~~~~~~~~~~~~h~~~V~sl~fspdg~~llasgs~D-----g~I~vwDl~t~~~i~~~~ 680 (837)
.+++.|+.+ ..+.+||+.+..............-.+++.. ++.+++.|+.+ ..+.+||+.+.+-...-.
T Consensus 17 ~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~ 94 (302)
T 2xn4_A 17 LMVVVGGQAPKAIRSVECYDFKEERWHQVAELPSRRCRAGMVYM--AGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVAN 94 (302)
T ss_dssp EEEEECCBSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEESCBCSSSBCCCEEEEETTTTEEEEECC
T ss_pred EEEEECCCCCCCCCcEEEEcCcCCcEeEcccCCcccccceEEEE--CCEEEEEeCcCCCccccceEEECCCCCceeeCCC
Confidence 344445432 3578888876543211101111111122222 35577677644 368899998876444332
Q ss_pred cCCC--eeEEEEecCCCEEEEEEcCC-----eEEEEECCCCeEEEE--EcCCCCCEEEEEEcCCCCEEEEEe-C------
Q 003236 681 CQSG--ATQMRFQPRLGRILAAAIEN-----YISILDVETQVCRLK--LQGHKNQVHSVCWNTSGEYLASVS-D------ 744 (837)
Q Consensus 681 ~~~~--i~sl~~sp~g~~llags~dg-----~I~iwDl~s~~~~~~--l~~h~~~V~sl~~spdg~~Lasgs-D------ 744 (837)
.... -.+++. .++..++.|+.++ .+.+||+.+.+-... +....... +++.. ++++++.|+ +
T Consensus 95 ~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~-~~~~~-~~~iyv~GG~~~~~~~~ 171 (302)
T 2xn4_A 95 MRDRRSTLGAAV-LNGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRRSSV-GVGVV-GGLLYAVGGYDVASRQC 171 (302)
T ss_dssp CSSCCBSCEEEE-ETTEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSSCCBSC-EEEEE-TTEEEEECCEETTTTEE
T ss_pred CCccccceEEEE-ECCEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCCcccCc-eEEEE-CCEEEEEeCCCCCCCcc
Confidence 2111 122222 2556666777553 588899887653322 11111111 22222 556666554 2
Q ss_pred -CeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcC-----CeEEEEECCCCcEEEeccCCCC--eeEEE
Q 003236 745 -ELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCY-----ETLELWNMTENKTLTLSAHDKL--VSSLA 816 (837)
Q Consensus 745 -g~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fspdg~~L~sgs~d-----g~I~IwDl~s~~~~~l~~h~~~--V~sla 816 (837)
..+.+||+.+.. ...+..+...... .+++.. ++..+++|+.+ ..+.+||+.+.+...+...... -.+++
T Consensus 172 ~~~~~~yd~~~~~-W~~~~~~p~~r~~-~~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~ 248 (302)
T 2xn4_A 172 LSTVECYNATTNE-WTYIAEMSTRRSG-AGVGVL-NNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVADMNMCRRNAGVC 248 (302)
T ss_dssp CCCEEEEETTTTE-EEEECCCSSCCBS-CEEEEE-TTEEEEECCBSSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEE
T ss_pred ccEEEEEeCCCCc-EEECCCCcccccc-ccEEEE-CCEEEEECCCCCCcccceEEEEeCCCCCEeeCCCCCCccccCeEE
Confidence 258899987652 1122112111111 222222 55666666654 3799999998876654322111 11222
Q ss_pred EeCCCCEEEEEECCC
Q 003236 817 ASTVNGMVASASHDK 831 (837)
Q Consensus 817 ~spdg~~LaSgs~DG 831 (837)
..++++++.|+.++
T Consensus 249 -~~~~~i~v~GG~~~ 262 (302)
T 2xn4_A 249 -AVNGLLYVVGGDDG 262 (302)
T ss_dssp -EETTEEEEECCBCS
T ss_pred -EECCEEEEECCcCC
Confidence 23677888887654
|
| >3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.23 E-value=0.024 Score=59.80 Aligned_cols=210 Identities=10% Similarity=0.043 Sum_probs=106.5
Q ss_pred CEEEEEeC--CCeEEEEEcCCCCceeEE-eeccccceEEEEEcCCCCeEEEEEeCC----CcEEEEECCCCeeeeEEecC
Q 003236 610 SRLATSSA--DRTVRVWDTENPDYSLRT-FTGHSTTVMSLDFHPSKEDLLCSCDNN----SEIRYWSINNGSCAGVFKCQ 682 (837)
Q Consensus 610 ~~Latgs~--Dg~I~IWDl~~~~~~~~~-~~~h~~~V~sl~fspdg~~llasgs~D----g~I~vwDl~t~~~i~~~~~~ 682 (837)
.+++.|+. ...+.+||..+....... +.........+.+ ++.+++.|+.+ ..+.+||+.+.+-...-...
T Consensus 13 ~l~~~GG~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~---~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p 89 (306)
T 3ii7_A 13 YRIALFGGSQPQSCRYFNPKDYSWTDIRCPFEKRRDAACVFW---DNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPP 89 (306)
T ss_dssp EEEEEECCSSTTSEEEEETTTTEEEECCCCSCCCBSCEEEEE---TTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCS
T ss_pred eEEEEeCCCCCceEEEecCCCCCEecCCCCCcccceeEEEEE---CCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCC
Confidence 34555554 357889998876532211 1111111222222 34577777654 67899999887654433322
Q ss_pred CC--eeEEEEecCCCEEEEEEcC------CeEEEEECCCCeEEEE--EcCCCCCEEEEEEcCCCCEEEEEe-C-------
Q 003236 683 SG--ATQMRFQPRLGRILAAAIE------NYISILDVETQVCRLK--LQGHKNQVHSVCWNTSGEYLASVS-D------- 744 (837)
Q Consensus 683 ~~--i~sl~~sp~g~~llags~d------g~I~iwDl~s~~~~~~--l~~h~~~V~sl~~spdg~~Lasgs-D------- 744 (837)
.. -.+++ .-++..++.|+.+ ..+.+||+.+.+-... +....... +++. -++++++.|+ +
T Consensus 90 ~~r~~~~~~-~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~-~~~~-~~~~iyv~GG~~~~~~~~~ 166 (306)
T 3ii7_A 90 TPRDSLAAC-AAEGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSH-GMVE-ANGLIYVCGGSLGNNVSGR 166 (306)
T ss_dssp SCCBSCEEE-EETTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBSC-EEEE-ETTEEEEECCEESCTTTCE
T ss_pred ccccceeEE-EECCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCccee-EEEE-ECCEEEEECCCCCCCCccc
Confidence 21 11222 2255666666654 4689999988753322 11111111 2222 2556666654 2
Q ss_pred --CeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcC-----CeEEEEECCCCcEEEeccCC---CCeeE
Q 003236 745 --ELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCY-----ETLELWNMTENKTLTLSAHD---KLVSS 814 (837)
Q Consensus 745 --g~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fspdg~~L~sgs~d-----g~I~IwDl~s~~~~~l~~h~---~~V~s 814 (837)
..+.+||+.+.. ...+..+..... -.+++.. ++..+++|+.+ ..|.+||+.+.+...+.... ....+
T Consensus 167 ~~~~~~~yd~~~~~-W~~~~~~p~~r~-~~~~~~~-~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~ 243 (306)
T 3ii7_A 167 VLNSCEVYDPATET-WTELCPMIEARK-NHGLVFV-KDKIFAVGGQNGLGGLDNVEYYDIKLNEWKMVSPMPWKGVTVKC 243 (306)
T ss_dssp ECCCEEEEETTTTE-EEEECCCSSCCB-SCEEEEE-TTEEEEECCEETTEEBCCEEEEETTTTEEEECCCCSCCBSCCEE
T ss_pred ccceEEEeCCCCCe-EEECCCccchhh-cceEEEE-CCEEEEEeCCCCCCCCceEEEeeCCCCcEEECCCCCCCccceeE
Confidence 348899988752 112211111111 1222222 55566666543 36899999988766443211 11222
Q ss_pred EEEeCCCCEEEEEECC
Q 003236 815 LAASTVNGMVASASHD 830 (837)
Q Consensus 815 la~spdg~~LaSgs~D 830 (837)
+.+ ++++++.|+.+
T Consensus 244 ~~~--~~~i~v~GG~~ 257 (306)
T 3ii7_A 244 AAV--GSIVYVLAGFQ 257 (306)
T ss_dssp EEE--TTEEEEEECBC
T ss_pred EEE--CCEEEEEeCcC
Confidence 222 67788888755
|
| >4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C} | Back alignment and structure |
|---|
Probab=97.17 E-value=0.00013 Score=87.95 Aligned_cols=14 Identities=21% Similarity=0.207 Sum_probs=2.3
Q ss_pred ccCCCCeeEEEEeC
Q 003236 806 SAHDKLVSSLAAST 819 (837)
Q Consensus 806 ~~h~~~V~sla~sp 819 (837)
..|-.-+..+.|.+
T Consensus 706 SDH~pV~a~f~l~~ 719 (727)
T 4b8c_D 706 SDHIPLLARFEFMK 719 (727)
T ss_dssp SSBCC---------
T ss_pred CCceeEEEEEEEec
Confidence 34544455555544
|
| >1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A | Back alignment and structure |
|---|
Probab=97.14 E-value=0.14 Score=57.78 Aligned_cols=155 Identities=12% Similarity=0.166 Sum_probs=88.7
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCce-eEEeec------cccceEEEEEcCC---CCeEEEEEeC------
Q 003236 598 QWITDVRFSPSLSRLATSSADRTVRVWDTENPDYS-LRTFTG------HSTTVMSLDFHPS---KEDLLCSCDN------ 661 (837)
Q Consensus 598 ~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~~~~~-~~~~~~------h~~~V~sl~fspd---g~~llasgs~------ 661 (837)
...+.|+|.|+|+++++-...+.|++++..++... +..+.. ....+..|+|+|+ +..++++-+.
T Consensus 27 ~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~~ 106 (454)
T 1cru_A 27 NKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKST 106 (454)
T ss_dssp SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC-
T ss_pred CCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCCC
Confidence 45679999999987766544457888876544321 222211 2355779999996 5556555442
Q ss_pred ------CCcEEEEECCCC--ee---eeEE---ec--CCCeeEEEEecCCCEEEEEEcC----------------------
Q 003236 662 ------NSEIRYWSINNG--SC---AGVF---KC--QSGATQMRFQPRLGRILAAAIE---------------------- 703 (837)
Q Consensus 662 ------Dg~I~vwDl~t~--~~---i~~~---~~--~~~i~sl~~sp~g~~llags~d---------------------- 703 (837)
...|..|++..+ .. ...+ .. ......++|.|++..+++.+..
T Consensus 107 ~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~Gd~~~~~~~~~~~~~~~~~~p~~~~ 186 (454)
T 1cru_A 107 DKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIGDQGRNQLAYLFLPNQAQHTPTQQE 186 (454)
T ss_dssp -CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEECCTTTTSGGGTTSCCCTTCCCCHHH
T ss_pred ccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEECCCCCCCcccccccccccccccccc
Confidence 235666665432 11 1112 11 2346889999999877665431
Q ss_pred ----------CeEEEEECCCCe----------EEEEE-cCCCCCEEEEEEcCCCCEEEEEe--CCeEEEEEcC
Q 003236 704 ----------NYISILDVETQV----------CRLKL-QGHKNQVHSVCWNTSGEYLASVS--DELVRVWSIG 753 (837)
Q Consensus 704 ----------g~I~iwDl~s~~----------~~~~l-~~h~~~V~sl~~spdg~~Lasgs--Dg~I~IwDl~ 753 (837)
|.|.-++..... ....+ .+| .....++|+++|.++++-. ++.-.|.-+.
T Consensus 187 ~~aq~~~~~~G~IlRi~~dG~ip~~Npf~~~~~~ei~a~G~-RNp~gla~dp~G~L~~~d~g~~~~dein~i~ 258 (454)
T 1cru_A 187 LNGKDYHTYMGKVLRLNLDGSIPKDNPSFNGVVSHIYTLGH-RNPQGLAFTPNGKLLQSEQGPNSDDEINLIV 258 (454)
T ss_dssp HHTTCCTTCSSEEEEECTTSCCCTTCCEETTEECSEEEBCC-SEEEEEEECTTSCEEEEEECSSSCEEEEECC
T ss_pred ccccCCCCCCeeEEEEeCCCCCCCCCCCCCCCcceEEEECC-CCcceEEECCCCCEEEEecCCCCCeEEEEec
Confidence 345555544320 11111 233 3567899999988777654 4444444443
|
| >3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale} | Back alignment and structure |
|---|
Probab=97.13 E-value=0.11 Score=55.19 Aligned_cols=234 Identities=5% Similarity=-0.078 Sum_probs=133.9
Q ss_pred cCCCCEEEEEE--CCCcEEEEeCCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCC--------------CeEEEEEcC
Q 003236 564 SPDGKLLATGG--HDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSAD--------------RTVRVWDTE 627 (837)
Q Consensus 564 Spdg~~Lasgs--~Dg~I~VWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~D--------------g~I~IWDl~ 627 (837)
+.+|.+|+... .++.|+..+.+... ...+.. +. +--+++++.+|+.+... ..|+..+++
T Consensus 22 ~~~g~~iy~~n~~d~~~ly~~~~dg~~-~~~l~~--~~--~~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~d 96 (302)
T 3s25_A 22 CESDGEVFFSNTNDNGRLYAMNIDGSN-IHKLSN--DT--AMYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRN 96 (302)
T ss_dssp EEETTEEEEEEGGGTTEEEEEETTSCS-CEEEEE--EE--EEEEEECSSEEEEEEECC------CCSSCCSEEEEEEETT
T ss_pred EEeCCEEEEEeCCCCceEEEEcCCCCC-CEEccC--Cc--eeeEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCC
Confidence 34677766664 35666666655433 333321 11 33456788888877653 467777777
Q ss_pred CCCceeEEeeccccceEEEEEcCCCCeEEEEE---eCCCcEEEEECCCCeeeeEEecCCCeeEEEEecCCCEEEEEEc-C
Q 003236 628 NPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSC---DNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAI-E 703 (837)
Q Consensus 628 ~~~~~~~~~~~h~~~V~sl~fspdg~~llasg---s~Dg~I~vwDl~t~~~i~~~~~~~~i~sl~~sp~g~~llags~-d 703 (837)
.... ..+... .+..|+++++.++++- ..+..|+..++...... .+.... + ..++++++.|+..+. .
T Consensus 97 g~~~--~~l~~~----~~~~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dGs~~~-~lt~~~-~--~~~~~~g~~iy~t~~g~ 166 (302)
T 3s25_A 97 GHGS--TVLDPD----PCIYASLIGNYIYYLHYDTQTATSLYRIRIDGEEKK-KIKNHY-L--FTCNTSDRYFYYNNPKN 166 (302)
T ss_dssp SCCC--EEEECS----CEEEEEEETTEEEEEEESSSSCEEEEEEETTSCCCE-EEESSC-C--CCSEEETTEEEEECTTT
T ss_pred CCcc--eEeecC----CccEEEEeCCEEEEEeecCCCCceEEEEECCCCCeE-EEeCCC-c--eEeeEECCEEEEEeCCC
Confidence 6542 222221 1235677788777665 34556777777644433 333222 2 456788888887765 5
Q ss_pred CeEEEEECCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEe--C-CeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCC
Q 003236 704 NYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS--D-ELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTF 780 (837)
Q Consensus 704 g~I~iwDl~s~~~~~~l~~h~~~V~sl~~spdg~~Lasgs--D-g~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fspdg 780 (837)
..|.+.++..+.....+.+ ... ..++|++.+|+-.. + ..|..-++..... ..+. ...+ ..|+|++
T Consensus 167 ~~Iy~~~l~g~~~~~l~~~---~~~-~~~~P~g~~iy~t~~~~~~~I~~~~ldG~~~----~~Lt--~~~~--~~~~~~g 234 (302)
T 3s25_A 167 GQLYRYDTASQSEALFYDC---NCY-KPVVLDDTNVYYMDVNRDNAIVHVNINNPNP----VVLT--EANI--EHYNVYG 234 (302)
T ss_dssp CCEEEEETTTTEEEEEECS---CEE-EEEEEETTEEEEEEGGGTTEEEEECSSSCCC----EECS--CSCE--EEEEEET
T ss_pred ceEEEEECCCCCEEEEeCC---Ccc-ceeeecCCEEEEEEcCCCcEEEEEECCCCCe----EEEe--CCCc--ceEEECC
Confidence 7899999887765444432 222 34669999888776 3 2566666665432 1221 2223 3488889
Q ss_pred CEEEEEEc--CCeEEEEECCCCcEEEeccCCCCeeEEEEeCCCCEEEEEE
Q 003236 781 PSLLVIGC--YETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASAS 828 (837)
Q Consensus 781 ~~L~sgs~--dg~I~IwDl~s~~~~~l~~h~~~V~sla~spdg~~LaSgs 828 (837)
..|+.+.. .+.|...++.......+... .+..+ ++.+.+|+-..
T Consensus 235 ~~Iy~~~~~~~~~i~~~~~DG~~r~~l~~~--~~~~i--~i~~d~Iy~td 280 (302)
T 3s25_A 235 SLIFYQRGGDNPALCVVKNDGTGFKELAKG--EFCNI--NVTSQYVYFTD 280 (302)
T ss_dssp TEEEEEECSSSCEEEEEETTSCCCEEEEES--CEEEE--EECSSEEEEEE
T ss_pred CEEEEEECCCCcEEEEEECCCCccEEeeCC--ccceE--EEeCCEEEEEE
Confidence 88887643 35788888876554433322 23333 34455555444
|
| >4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C} | Back alignment and structure |
|---|
Probab=97.09 E-value=0.00015 Score=87.51 Aligned_cols=9 Identities=11% Similarity=0.261 Sum_probs=3.4
Q ss_pred CCcEEEEeC
Q 003236 576 DKKAVLWCT 584 (837)
Q Consensus 576 Dg~I~VWd~ 584 (837)
+|...+|..
T Consensus 487 ~G~AI~y~~ 495 (727)
T 4b8c_D 487 DGCCIFFKR 495 (727)
T ss_dssp CCCEEEC--
T ss_pred ccEEEEEEc
Confidence 444555443
|
| >2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=97.03 E-value=0.091 Score=55.72 Aligned_cols=227 Identities=8% Similarity=0.006 Sum_probs=111.1
Q ss_pred EEEEEECCCcEEEEeCCCCeEEE-EeccCCCCeEEEEEcCCCCEEEEEeC----CC-------eEEEEEcCCCCceeEEe
Q 003236 569 LLATGGHDKKAVLWCTESFTVKS-TLEEHTQWITDVRFSPSLSRLATSSA----DR-------TVRVWDTENPDYSLRTF 636 (837)
Q Consensus 569 ~Lasgs~Dg~I~VWd~~t~~~~~-~l~~h~~~I~~l~fspdg~~Latgs~----Dg-------~I~IWDl~~~~~~~~~~ 636 (837)
+++.|+. .+.+||..+.+-.. .+..............++.+++.|+. ++ .+.+||..+.......-
T Consensus 18 i~~~GG~--~~~~yd~~~~~W~~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~ 95 (318)
T 2woz_A 18 ILLVNDT--AAVAYDPMENECYLTALAEQIPRNHSSIVTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPP 95 (318)
T ss_dssp EEEECSS--EEEEEETTTTEEEEEEECTTSCSSEEEEECSSSCEEEEESSCC-------CCCBEEEEEETTTTEEEECSC
T ss_pred hhhcccc--ceEEECCCCCceecccCCccCCccceEEEEECCEEEEECCcccCccccCCCccccEEEEeCCCCcEEECCC
Confidence 3444443 37889988776543 12211122223333456778888873 12 27788887655321111
Q ss_pred eccccceEEEEEcCCCCeEEEEEeCC-------CcEEEEECCCCeeeeEEecCCCe--eEEEEecCCCEEEEEEc-----
Q 003236 637 TGHSTTVMSLDFHPSKEDLLCSCDNN-------SEIRYWSINNGSCAGVFKCQSGA--TQMRFQPRLGRILAAAI----- 702 (837)
Q Consensus 637 ~~h~~~V~sl~fspdg~~llasgs~D-------g~I~vwDl~t~~~i~~~~~~~~i--~sl~~sp~g~~llags~----- 702 (837)
......-.+++.. + +.+++.|+.+ ..+.+||+.+.+-...-...... .+++. .++..++.|+.
T Consensus 96 ~p~~r~~~~~~~~-~-~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~ 172 (318)
T 2woz_A 96 LPSARCLFGLGEV-D-DKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYGHNVIS-HNGMIYCLGGKTDDKK 172 (318)
T ss_dssp BSSCBCSCEEEEE-T-TEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSCEESCEEEE-ETTEEEEECCEESSSC
T ss_pred CCccccccceEEE-C-CEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCcccccEEEE-ECCEEEEEcCCCCCCC
Confidence 1111111222222 3 4566666643 35888999877644432222211 12222 35555566654
Q ss_pred -CCeEEEEECCCCeEEEE--EcCCCCCEEEEEEcCCCCEEEEEe-C-----CeEEEEEcCCCCCceeEEEeecCCCceEE
Q 003236 703 -ENYISILDVETQVCRLK--LQGHKNQVHSVCWNTSGEYLASVS-D-----ELVRVWSIGSGSKGECIHELSCTGNKFHS 773 (837)
Q Consensus 703 -dg~I~iwDl~s~~~~~~--l~~h~~~V~sl~~spdg~~Lasgs-D-----g~I~IwDl~s~~~~~~i~~~~~~~~~I~s 773 (837)
.+.+.+||+.+.+-... +....... +++.. ++++++.|+ + ..+.+||+.+.. ...+..+...... .+
T Consensus 173 ~~~~~~~yd~~~~~W~~~~~~p~~r~~~-~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~~~~-W~~~~~~p~~r~~-~~ 248 (318)
T 2woz_A 173 CTNRVFIYNPKKGDWKDLAPMKTPRSMF-GVAIH-KGKIVIAGGVTEDGLSASVEAFDLKTNK-WEVMTEFPQERSS-IS 248 (318)
T ss_dssp BCCCEEEEETTTTEEEEECCCSSCCBSC-EEEEE-TTEEEEEEEEETTEEEEEEEEEETTTCC-EEECCCCSSCCBS-CE
T ss_pred ccceEEEEcCCCCEEEECCCCCCCcccc-eEEEE-CCEEEEEcCcCCCCccceEEEEECCCCe-EEECCCCCCcccc-eE
Confidence 24699999988643322 11111111 22222 556666665 2 257889987752 1222222111111 12
Q ss_pred EEEeCCCCEEEEEEcC--------------CeEEEEECCCCcEEEe
Q 003236 774 CVFHPTFPSLLVIGCY--------------ETLELWNMTENKTLTL 805 (837)
Q Consensus 774 v~fspdg~~L~sgs~d--------------g~I~IwDl~s~~~~~l 805 (837)
++. -++..+++|+.+ ..|.+||+.+.+...+
T Consensus 249 ~~~-~~~~i~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~ 293 (318)
T 2woz_A 249 LVS-LAGSLYAIGGFAMIQLESKEFAPTEVNDIWKYEDDKKEWAGM 293 (318)
T ss_dssp EEE-ETTEEEEECCBCCBC----CCBCCBCCCEEEEETTTTEEEEE
T ss_pred EEE-ECCEEEEECCeeccCCCCceeccceeeeEEEEeCCCCEehhh
Confidence 222 245566666543 3688999988776644
|
| >2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=97.00 E-value=0.018 Score=62.32 Aligned_cols=231 Identities=8% Similarity=-0.073 Sum_probs=113.0
Q ss_pred CCCEEEEEECC-CcEEEEeCCC--CeE--EEEec-cCCCCeEEEEEcCCCCEEEEEeC-C---------CeEEEEEcCCC
Q 003236 566 DGKLLATGGHD-KKAVLWCTES--FTV--KSTLE-EHTQWITDVRFSPSLSRLATSSA-D---------RTVRVWDTENP 629 (837)
Q Consensus 566 dg~~Lasgs~D-g~I~VWd~~t--~~~--~~~l~-~h~~~I~~l~fspdg~~Latgs~-D---------g~I~IWDl~~~ 629 (837)
++++++.|+.+ ..+.+||..+ .+- +..+. .......++.+ ++++++.|+. + ..+.+||+.+.
T Consensus 19 ~~~iyv~GG~~~~~~~~~d~~~~~~~W~~~~~~p~~~R~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~ 96 (357)
T 2uvk_A 19 NDTVYIGLGSAGTAWYKLDTQAKDKKWTALAAFPGGPRDQATSAFI--DGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTN 96 (357)
T ss_dssp TTEEEEECGGGTTCEEEEETTSSSCCEEECCCCTTCCCBSCEEEEE--TTEEEEECCEEECTTSCEEECCCEEEEETTTT
T ss_pred CCEEEEEeCcCCCeEEEEccccCCCCeeECCCCCCCcCccceEEEE--CCEEEEEcCCCCCCCccceeeccEEEEeCCCC
Confidence 56676777643 5688899863 222 22222 11112222222 5667777765 2 46889999876
Q ss_pred CceeEEeec-cccceEEEEEcCCCCeEEEEEeCC---------------------------------------CcEEEEE
Q 003236 630 DYSLRTFTG-HSTTVMSLDFHPSKEDLLCSCDNN---------------------------------------SEIRYWS 669 (837)
Q Consensus 630 ~~~~~~~~~-h~~~V~sl~fspdg~~llasgs~D---------------------------------------g~I~vwD 669 (837)
......... ....-.+++. .+ +.+++.|+.+ ..+.+||
T Consensus 97 ~W~~~~~~~p~~r~~~~~~~-~~-~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd 174 (357)
T 2uvk_A 97 SWVKLMSHAPMGMAGHVTFV-HN-GKAYVTGGVNQNIFNGYFEDLNEAGKDSTAIDKINAHYFDKKAEDYFFNKFLLSFD 174 (357)
T ss_dssp EEEECSCCCSSCCSSEEEEE-ET-TEEEEEECCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHSSCGGGGCCCCEEEEEE
T ss_pred cEEECCCCCCcccccceEEE-EC-CEEEEEeCcCCCcCcccccchhhcCCcccchhhhhhhhccccccccCCcccEEEEe
Confidence 542211111 1111112222 23 4577777654 5789999
Q ss_pred CCCCeeeeEEecCC--Ce-eEEEEecCCCEEEEEEc------CCeEEEEEC--CCCeEE--EEEcCCCCCEEEEEEcCCC
Q 003236 670 INNGSCAGVFKCQS--GA-TQMRFQPRLGRILAAAI------ENYISILDV--ETQVCR--LKLQGHKNQVHSVCWNTSG 736 (837)
Q Consensus 670 l~t~~~i~~~~~~~--~i-~sl~~sp~g~~llags~------dg~I~iwDl--~s~~~~--~~l~~h~~~V~sl~~spdg 736 (837)
+.+.+-...-.... .. .+++.. ++..++.|+. ...+.+||+ .+.+-. ..+........+.+...++
T Consensus 175 ~~~~~W~~~~~~p~~~~~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~~~d~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~ 253 (357)
T 2uvk_A 175 PSTQQWSYAGESPWYGTAGAAVVNK-GDKTWLINGEAKPGLRTDAVFELDFTGNNLKWNKLAPVSSPDGVAGGFAGISND 253 (357)
T ss_dssp TTTTEEEEEEECSSCCCBSCEEEEE-TTEEEEECCEEETTEECCCEEEEECC---CEEEECCCSSTTTCCBSCEEEEETT
T ss_pred CCCCcEEECCCCCCCCcccccEEEE-CCEEEEEeeecCCCcccCceEEEEecCCCCcEEecCCCCCCcccccceEEEECC
Confidence 98876554433221 22 233333 4455555543 346778887 433221 1111111111111222355
Q ss_pred CEEEEEe-C----------------------CeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCC---
Q 003236 737 EYLASVS-D----------------------ELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYE--- 790 (837)
Q Consensus 737 ~~Lasgs-D----------------------g~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fspdg~~L~sgs~dg--- 790 (837)
++++.|+ + ..+.+||+.+.. ...+..+....... .++.-++..+++|+.++
T Consensus 254 ~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~-W~~~~~~p~~r~~~--~~~~~~~~i~v~GG~~~~~~ 330 (357)
T 2uvk_A 254 SLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGK-WDKSGELSQGRAYG--VSLPWNNSLLIIGGETAGGK 330 (357)
T ss_dssp EEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC----CEEEEECSSCCBSS--EEEEETTEEEEEEEECGGGC
T ss_pred EEEEEcCccccCCcccccccceeccccccceeeEEEEecCCCc-eeeCCCCCCCcccc--eeEEeCCEEEEEeeeCCCCC
Confidence 6666655 2 257889988653 23333333222222 22334667778888653
Q ss_pred ---eEEEEECCCCcEEE
Q 003236 791 ---TLELWNMTENKTLT 804 (837)
Q Consensus 791 ---~I~IwDl~s~~~~~ 804 (837)
.|.++++++++.+.
T Consensus 331 ~~~~v~~l~~~~~~~~~ 347 (357)
T 2uvk_A 331 AVTDSVLITVKDNKVTV 347 (357)
T ss_dssp EEEEEEEEEC-CCSCEE
T ss_pred EeeeEEEEEEcCcEeEe
Confidence 57778998888773
|
| >3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale} | Back alignment and structure |
|---|
Probab=96.99 E-value=0.034 Score=59.27 Aligned_cols=195 Identities=9% Similarity=0.046 Sum_probs=114.2
Q ss_pred CCCCEEEEEe--CCCeEEEEEcCCCCceeEEeeccccceEEEEEcCCCCeEEEEEeCC-------------CcEEEEECC
Q 003236 607 PSLSRLATSS--ADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN-------------SEIRYWSIN 671 (837)
Q Consensus 607 pdg~~Latgs--~Dg~I~IWDl~~~~~~~~~~~~h~~~V~sl~fspdg~~llasgs~D-------------g~I~vwDl~ 671 (837)
.++..|+... .++.|+..+.+... ...+... . +--++++++.+.++...+ ..|+..++.
T Consensus 23 ~~g~~iy~~n~~d~~~ly~~~~dg~~--~~~l~~~--~--~~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~d 96 (302)
T 3s25_A 23 ESDGEVFFSNTNDNGRLYAMNIDGSN--IHKLSND--T--AMYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRN 96 (302)
T ss_dssp EETTEEEEEEGGGTTEEEEEETTSCS--CEEEEEE--E--EEEEEECSSEEEEEEECC------CCSSCCSEEEEEEETT
T ss_pred EeCCEEEEEeCCCCceEEEEcCCCCC--CEEccCC--c--eeeEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCC
Confidence 4566666654 24566666665433 2333221 1 234567888888776654 467777877
Q ss_pred CCeeeeEEecCCCeeEEEEecCCCEEEEEE----cCCeEEEEECCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEeC--C
Q 003236 672 NGSCAGVFKCQSGATQMRFQPRLGRILAAA----IENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVSD--E 745 (837)
Q Consensus 672 t~~~i~~~~~~~~i~sl~~sp~g~~llags----~dg~I~iwDl~s~~~~~~l~~h~~~V~sl~~spdg~~LasgsD--g 745 (837)
..+...... . .+..|+++++.|+... ....|+..++..... ..+..+.. ..|+++++.|+..++ .
T Consensus 97 g~~~~~l~~--~--~~~~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dGs~~-~~lt~~~~----~~~~~~g~~iy~t~~g~~ 167 (302)
T 3s25_A 97 GHGSTVLDP--D--PCIYASLIGNYIYYLHYDTQTATSLYRIRIDGEEK-KKIKNHYL----FTCNTSDRYFYYNNPKNG 167 (302)
T ss_dssp SCCCEEEEC--S--CEEEEEEETTEEEEEEESSSSCEEEEEEETTSCCC-EEEESSCC----CCSEEETTEEEEECTTTC
T ss_pred CCcceEeec--C--CccEEEEeCCEEEEEeecCCCCceEEEEECCCCCe-EEEeCCCc----eEeeEECCEEEEEeCCCc
Confidence 665333222 2 2336788889988877 234677777764433 33333332 456778888887774 5
Q ss_pred eEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCC--eEEEEECCCCcEEEeccCCCCeeEEEEeCCCCE
Q 003236 746 LVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYE--TLELWNMTENKTLTLSAHDKLVSSLAASTVNGM 823 (837)
Q Consensus 746 ~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fspdg~~L~sgs~dg--~I~IwDl~s~~~~~l~~h~~~V~sla~spdg~~ 823 (837)
.|.+.++..+.. +.+ +. .... ..++|++.+|+.....+ .|..-++.......+... .+ ..|+|++++
T Consensus 168 ~Iy~~~l~g~~~-~~l--~~---~~~~-~~~~P~g~~iy~t~~~~~~~I~~~~ldG~~~~~Lt~~--~~--~~~~~~g~~ 236 (302)
T 3s25_A 168 QLYRYDTASQSE-ALF--YD---CNCY-KPVVLDDTNVYYMDVNRDNAIVHVNINNPNPVVLTEA--NI--EHYNVYGSL 236 (302)
T ss_dssp CEEEEETTTTEE-EEE--EC---SCEE-EEEEEETTEEEEEEGGGTTEEEEECSSSCCCEECSCS--CE--EEEEEETTE
T ss_pred eEEEEECCCCCE-EEE--eC---CCcc-ceeeecCCEEEEEEcCCCcEEEEEECCCCCeEEEeCC--Cc--ceEEECCCE
Confidence 788888776521 112 22 2222 34669999998887653 788888877765554322 23 235666666
Q ss_pred EEEE
Q 003236 824 VASA 827 (837)
Q Consensus 824 LaSg 827 (837)
|+.+
T Consensus 237 Iy~~ 240 (302)
T 3s25_A 237 IFYQ 240 (302)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 6554
|
| >1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A | Back alignment and structure |
|---|
Probab=96.88 E-value=0.36 Score=54.33 Aligned_cols=106 Identities=17% Similarity=0.159 Sum_probs=63.0
Q ss_pred CCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEE--EEecc------CCCCeEEEEEcCC---CCEEEEEeC------
Q 003236 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVK--STLEE------HTQWITDVRFSPS---LSRLATSSA------ 617 (837)
Q Consensus 555 ~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~~--~~l~~------h~~~I~~l~fspd---g~~Latgs~------ 617 (837)
-..-+.|+|.|||+++++-...+.|++++..++... ..+.. ....+..|+|+|+ +..|+++..
T Consensus 26 l~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~ 105 (454)
T 1cru_A 26 LNKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKS 105 (454)
T ss_dssp CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC
T ss_pred CCCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCC
Confidence 345679999999987776544357988876555433 23321 2456789999995 555555442
Q ss_pred -------CCeEEEEEcCCCCc-------eeEEee-ccccceEEEEEcCCCCeEEEEEe
Q 003236 618 -------DRTVRVWDTENPDY-------SLRTFT-GHSTTVMSLDFHPSKEDLLCSCD 660 (837)
Q Consensus 618 -------Dg~I~IWDl~~~~~-------~~~~~~-~h~~~V~sl~fspdg~~llasgs 660 (837)
...|.-|++..... .+..+. ........|+|.|+|..++.+|+
T Consensus 106 ~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~Gd 163 (454)
T 1cru_A 106 TDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIGD 163 (454)
T ss_dssp --CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEECC
T ss_pred CccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEECC
Confidence 23566666543211 111121 11234688999999875554443
|
| >3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A | Back alignment and structure |
|---|
Probab=96.85 E-value=0.062 Score=59.41 Aligned_cols=141 Identities=18% Similarity=0.187 Sum_probs=93.4
Q ss_pred CCCEEEEEEcCCeEEEEECCCCeEEEEEcCC----CCCEEEEEEcCCCCEEEEEeCCeEEEEEcCCCCC-c--------e
Q 003236 693 RLGRILAAAIENYISILDVETQVCRLKLQGH----KNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSK-G--------E 759 (837)
Q Consensus 693 ~g~~llags~dg~I~iwDl~s~~~~~~l~~h----~~~V~sl~~spdg~~LasgsDg~I~IwDl~s~~~-~--------~ 759 (837)
++..++++- ++.|+..++......+.+... -..|..+..+|+|.+||..++..|.|..+..+.. . .
T Consensus 31 n~t~i~~a~-~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g~~~V~Vv~LP~~~~~~~~~~~~~~~ 109 (452)
T 3pbp_A 31 NGTRIVFIQ-DNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFNDNEIFVMEVPWGYSNVEDVSIQDAF 109 (452)
T ss_dssp TTTEEEEEE-TTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEECSSEEEEEECCTTCSCCCCHHHHHTT
T ss_pred CCCEEEEEE-CCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEecCCeEEEEEecCccccCccccccccc
Confidence 334443333 366777776633222233221 2257889999999999999999999999984321 0 1
Q ss_pred eEEEeec------CCCceEEEEEeCCC---CEEEEEEcCCeEEEEECCCCc--EE---------EeccCCCCeeEEEEeC
Q 003236 760 CIHELSC------TGNKFHSCVFHPTF---PSLLVIGCYETLELWNMTENK--TL---------TLSAHDKLVSSLAAST 819 (837)
Q Consensus 760 ~i~~~~~------~~~~I~sv~fspdg---~~L~sgs~dg~I~IwDl~s~~--~~---------~l~~h~~~V~sla~sp 819 (837)
....+.. ....|..+.|||-+ ..|++-..|+.|++||+.... +. ........|.+++|..
T Consensus 110 q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~~L~k~~~~fg~d~~~~ev~S~~Fg~ 189 (452)
T 3pbp_A 110 QIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPIVLNKPNNSFGLDARVNDITDLEFSK 189 (452)
T ss_dssp EEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCEEESCCCSEEESCSSCCCEEEEEECT
T ss_pred ceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCcchhccccccCCCcccceEEEEEEcC
Confidence 1122222 24679999999965 689999999999999997622 11 1223346789999999
Q ss_pred CCCEEEEEE--CCCcEE
Q 003236 820 VNGMVASAS--HDKCVK 834 (837)
Q Consensus 820 dg~~LaSgs--~DG~I~ 834 (837)
++-.|+..+ .+|.|+
T Consensus 190 ~~lTLYvl~~t~~GDIY 206 (452)
T 3pbp_A 190 DGLTLYCLNTTEGGDIF 206 (452)
T ss_dssp TSSCEEEEECTTSCEEE
T ss_pred CCcEEEEEecCCCCCEE
Confidence 887666655 778775
|
| >4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.85 E-value=0.11 Score=55.04 Aligned_cols=210 Identities=10% Similarity=0.021 Sum_probs=104.1
Q ss_pred EEEEEeCCCeEEEEEcCCCCceeEEeeccccceEEEEEcCCCCeEEEEEeC-----C------CcEEEEECCCCeeeeEE
Q 003236 611 RLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDN-----N------SEIRYWSINNGSCAGVF 679 (837)
Q Consensus 611 ~Latgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~sl~fspdg~~llasgs~-----D------g~I~vwDl~t~~~i~~~ 679 (837)
+++.|+ ..+.+||..+.......+..............+ +.+++.|+. . ..+.+||+.+.+-...-
T Consensus 7 l~~~GG--~~~~~yd~~~~~W~~~~~~~p~~r~~~~~~~~~-~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~ 83 (315)
T 4asc_A 7 IFMISE--EGAVAYDPAANECYCASLSSQVPKNHVSLVTKE-NQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMP 83 (315)
T ss_dssp EEEEET--TEEEEEETTTTEEEEEECCCCSCSSEEEEECTT-CCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECC
T ss_pred EEEEcC--CceEEECCCCCeEecCCCCCCCCccceEEEEEC-CEEEEEcCcccCCCCCccccccceEEecCCCCeEEECC
Confidence 344454 579999999877543222211122222222334 445556652 1 13788999887643322
Q ss_pred ecCCCe--eEEEEecCCCEEEEEEcC--------CeEEEEECCCCeEEE--EEcCCCCCEEEEEEcCCCCEEEEEe--C-
Q 003236 680 KCQSGA--TQMRFQPRLGRILAAAIE--------NYISILDVETQVCRL--KLQGHKNQVHSVCWNTSGEYLASVS--D- 744 (837)
Q Consensus 680 ~~~~~i--~sl~~sp~g~~llags~d--------g~I~iwDl~s~~~~~--~l~~h~~~V~sl~~spdg~~Lasgs--D- 744 (837)
...... .+++.. ++..++.|+.+ +.+.+||+.+.+-.. .+...... .+++. -++++++.|+ +
T Consensus 84 ~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~-~~~~~-~~~~iyv~GG~~~~ 160 (315)
T 4asc_A 84 PLPSPRCLFGLGEA-LNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYG-HTVLS-HMDLVYVIGGKGSD 160 (315)
T ss_dssp CBSSCEESCEEEEE-TTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBS-CEEEE-ETTEEEEECCBCTT
T ss_pred CCCcchhceeEEEE-CCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccc-eeEEE-ECCEEEEEeCCCCC
Confidence 222111 122222 44555566532 468999998764322 11111111 12222 3555666554 2
Q ss_pred ----CeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCC-----eEEEEECCCCcEEEeccCCC--Cee
Q 003236 745 ----ELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYE-----TLELWNMTENKTLTLSAHDK--LVS 813 (837)
Q Consensus 745 ----g~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fspdg~~L~sgs~dg-----~I~IwDl~s~~~~~l~~h~~--~V~ 813 (837)
..+.+||+.+.. ...+..+...... .+++.. ++..+++|+.++ .+.+||+.+.+...+..... .-.
T Consensus 161 ~~~~~~~~~yd~~~~~-W~~~~~~p~~r~~-~~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~ 237 (315)
T 4asc_A 161 RKCLNKMCVYDPKKFE-WKELAPMQTARSL-FGATVH-DGRIIVAAGVTDTGLTSSAEVYSITDNKWAPFEAFPQERSSL 237 (315)
T ss_dssp SCBCCCEEEEETTTTE-EEECCCCSSCCBS-CEEEEE-TTEEEEEEEECSSSEEEEEEEEETTTTEEEEECCCSSCCBSC
T ss_pred CcccceEEEEeCCCCe-EEECCCCCCchhc-eEEEEE-CCEEEEEeccCCCCccceEEEEECCCCeEEECCCCCCcccce
Confidence 368999987752 1111111111111 222222 566677777654 68999999887665432111 111
Q ss_pred EEEEeCCCCEEEEEECC
Q 003236 814 SLAASTVNGMVASASHD 830 (837)
Q Consensus 814 sla~spdg~~LaSgs~D 830 (837)
+++. -++++++.|+.+
T Consensus 238 ~~~~-~~~~l~v~GG~~ 253 (315)
T 4asc_A 238 SLVS-LVGTLYAIGGFA 253 (315)
T ss_dssp EEEE-ETTEEEEEEEEE
T ss_pred eEEE-ECCEEEEECCcc
Confidence 2222 356777777764
|
| >2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.77 E-value=0.012 Score=63.63 Aligned_cols=192 Identities=6% Similarity=-0.022 Sum_probs=104.5
Q ss_pred CEEEEEeCCCeEEEEEcCCCCceeEEeecc-ccceEEEEE--cCCCCeEEEEE-eCCCcEEEEECCCCeeeeEEecCCCe
Q 003236 610 SRLATSSADRTVRVWDTENPDYSLRTFTGH-STTVMSLDF--HPSKEDLLCSC-DNNSEIRYWSINNGSCAGVFKCQSGA 685 (837)
Q Consensus 610 ~~Latgs~Dg~I~IWDl~~~~~~~~~~~~h-~~~V~sl~f--spdg~~llasg-s~Dg~I~vwDl~t~~~i~~~~~~~~i 685 (837)
.++++++.||.|+-+|..+++. ...+... ..++....- .+.+..+++.. ..||.|+.++..+|.....+.....+
T Consensus 11 ~~V~v~t~dG~l~Ald~~tG~~-~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~lv 89 (339)
T 2be1_A 11 DILIAADVEGGLHAVDRRNGHI-IWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQLV 89 (339)
T ss_dssp EEEEEEETTSCEEEEETTTTEE-EEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHHH
T ss_pred CEEEEEeCCCeEEEEECCCCcE-EEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeeccccce
Confidence 4788999999999999998775 3333322 122222110 01123344443 57999999999988666555532211
Q ss_pred e--EEEEe-----------cCCCEEEEEEcCCeEEEEECCCCeEEEEEcCCC--CC-----EEEEEEc-----CCCCEEE
Q 003236 686 T--QMRFQ-----------PRLGRILAAAIENYISILDVETQVCRLKLQGHK--NQ-----VHSVCWN-----TSGEYLA 740 (837)
Q Consensus 686 ~--sl~~s-----------p~g~~llags~dg~I~iwDl~s~~~~~~l~~h~--~~-----V~sl~~s-----pdg~~La 740 (837)
. -+... ..++.+++++.++.+..+|+++|+.+..+.... .. ..|.... ..+..|+
T Consensus 90 ~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~e~~~~~~d~~~d~~~~~v~ 169 (339)
T 2be1_A 90 STSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPGSKNGYFGSQSVDCSPEEKIKLQECENMIV 169 (339)
T ss_dssp TTCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEESTTCBCC--------------------CCEEE
T ss_pred eccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecCCCcccccccccccccccccccccCCCeEE
Confidence 1 11111 146789999999999999999999999987431 10 1111111 1234555
Q ss_pred EEe-CCeEEEEEcCCCCCcee-EEEeecCCCc--e-EEEEEeCCCCEEEEEEcCCeEEEEECCCCcEEE
Q 003236 741 SVS-DELVRVWSIGSGSKGEC-IHELSCTGNK--F-HSCVFHPTFPSLLVIGCYETLELWNMTENKTLT 804 (837)
Q Consensus 741 sgs-Dg~I~IwDl~s~~~~~~-i~~~~~~~~~--I-~sv~fspdg~~L~sgs~dg~I~IwDl~s~~~~~ 804 (837)
.+. +..|.+.+ +++..... +......... + ..-.++.++.+ ++++.||.|+.+|..++..+-
T Consensus 170 ig~~~y~v~~~~-~sG~~W~~~~s~~~~~~~~~~~~~~~~~s~Dg~~-~~~~~dg~v~A~d~~~G~~~W 236 (339)
T 2be1_A 170 IGKTIFELGIHS-YDGASYNVTYSTWQQNVLDVPLALQNTFSKDGMC-IAPFRDKSLLASDLDFRIARW 236 (339)
T ss_dssp EEEEEEECEECC-TTSCCCCCEEEEEECCTTTHHHHTTCSSCSSSCC-EEEETTTEEEEECSTTCCEEE
T ss_pred EecceEEEEEEC-CCCCeEEEecccccccccccccccccccccCCcE-EEECCCCEEEEEECCCCcEEE
Confidence 555 66676666 33321110 1111110000 0 00001123554 557888888888888777653
|
| >2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.76 E-value=0.0088 Score=64.81 Aligned_cols=185 Identities=9% Similarity=0.033 Sum_probs=102.7
Q ss_pred CEEEEEECCCcEEEEeCCCCeEEEEeccC-CCCeEEEEEc--C-CCCEEEEE-eCCCeEEEEEcCCCCceeEEeec----
Q 003236 568 KLLATGGHDKKAVLWCTESFTVKSTLEEH-TQWITDVRFS--P-SLSRLATS-SADRTVRVWDTENPDYSLRTFTG---- 638 (837)
Q Consensus 568 ~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h-~~~I~~l~fs--p-dg~~Latg-s~Dg~I~IWDl~~~~~~~~~~~~---- 638 (837)
.++++++.||.|+-+|.++|+....+... ..++....-. + ++..++.. +.||.|+.++..++.... .+..
T Consensus 11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~-~~~~~~lv 89 (339)
T 2be1_A 11 DILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKL-PLSIRQLV 89 (339)
T ss_dssp EEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEE-EEEHHHHH
T ss_pred CEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEe-eeccccce
Confidence 37888999999999999999999888654 1222221100 1 22333333 589999999988764322 1111
Q ss_pred cccceEE---EEE-cC---CCCeEEEEEeCCCcEEEEECCCCeeeeEEecCCCe--------eEEEEe-----cCCCEEE
Q 003236 639 HSTTVMS---LDF-HP---SKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGA--------TQMRFQ-----PRLGRIL 698 (837)
Q Consensus 639 h~~~V~s---l~f-sp---dg~~llasgs~Dg~I~vwDl~t~~~i~~~~~~~~i--------~sl~~s-----p~g~~ll 698 (837)
...++.. ... .+ .....+++++.+|.+...|+++|+.+..+...... .|.... ..+..++
T Consensus 90 ~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~e~~~~~~d~~~d~~~~~v~ 169 (339)
T 2be1_A 90 STSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPGSKNGYFGSQSVDCSPEEKIKLQECENMIV 169 (339)
T ss_dssp TTCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEESTTCBCC--------------------CCEEE
T ss_pred eccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecCCCcccccccccccccccccccccCCCeEE
Confidence 1111211 000 00 02346778999999999999999999998764321 122111 1235677
Q ss_pred EEEcCCeEEEEECCCCeEEEEE-----cCCCCC--E-EEEEEcCCCCEEEEEeCCeEEEEEcCCC
Q 003236 699 AAAIENYISILDVETQVCRLKL-----QGHKNQ--V-HSVCWNTSGEYLASVSDELVRVWSIGSG 755 (837)
Q Consensus 699 ags~dg~I~iwDl~s~~~~~~l-----~~h~~~--V-~sl~~spdg~~LasgsDg~I~IwDl~s~ 755 (837)
.+..+..+.+.+ ++++ +..+ ...... + .+-..+.|+.++++..||.|..+|..++
T Consensus 170 ig~~~y~v~~~~-~sG~-~W~~~~s~~~~~~~~~~~~~~~~~s~Dg~~~~~~~dg~v~A~d~~~G 232 (339)
T 2be1_A 170 IGKTIFELGIHS-YDGA-SYNVTYSTWQQNVLDVPLALQNTFSKDGMCIAPFRDKSLLASDLDFR 232 (339)
T ss_dssp EEEEEEECEECC-TTSC-CCCCEEEEEECCTTTHHHHTTCSSCSSSCCEEEETTTEEEEECSTTC
T ss_pred EecceEEEEEEC-CCCC-eEEEecccccccccccccccccccccCCcEEEECCCCEEEEEECCCC
Confidence 777777777776 4443 2111 110000 0 0000112466666555888888887776
|
| >2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=96.61 E-value=0.16 Score=53.69 Aligned_cols=210 Identities=11% Similarity=0.053 Sum_probs=102.0
Q ss_pred EEEEEeCCCeEEEEEcCCCCceeEEeeccccceEEEEEcCCCCeEEEEEeC----CC-------cEEEEECCCCeeeeEE
Q 003236 611 RLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDN----NS-------EIRYWSINNGSCAGVF 679 (837)
Q Consensus 611 ~Latgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~sl~fspdg~~llasgs~----Dg-------~I~vwDl~t~~~i~~~ 679 (837)
+++.|+. .+.+||..+.+....................+ +.+++.|+. ++ .+.+||..+.+-...-
T Consensus 18 i~~~GG~--~~~~yd~~~~~W~~~~~~~~~~r~~~~~~~~~-~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~ 94 (318)
T 2woz_A 18 ILLVNDT--AAVAYDPMENECYLTALAEQIPRNHSSIVTQQ-NQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLP 94 (318)
T ss_dssp EEEECSS--EEEEEETTTTEEEEEEECTTSCSSEEEEECSS-SCEEEEESSCC-------CCCBEEEEEETTTTEEEECS
T ss_pred hhhcccc--ceEEECCCCCceecccCCccCCccceEEEEEC-CEEEEECCcccCccccCCCccccEEEEeCCCCcEEECC
Confidence 3444443 48899998876533222211111122222333 446666662 11 2778898876644332
Q ss_pred ecCCC--eeEEEEecCCCEEEEEEcC-------CeEEEEECCCCeEEEEEcCCCCCE--EEEEEcCCCCEEEEEe--C--
Q 003236 680 KCQSG--ATQMRFQPRLGRILAAAIE-------NYISILDVETQVCRLKLQGHKNQV--HSVCWNTSGEYLASVS--D-- 744 (837)
Q Consensus 680 ~~~~~--i~sl~~sp~g~~llags~d-------g~I~iwDl~s~~~~~~l~~h~~~V--~sl~~spdg~~Lasgs--D-- 744 (837)
..... -.+++.. ++..++.|+.+ ..+.+||+.+.+-... .....+. .+++. .++++++.|+ +
T Consensus 95 ~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~-~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~ 171 (318)
T 2woz_A 95 PLPSARCLFGLGEV-DDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEV-KNLPIKVYGHNVIS-HNGMIYCLGGKTDDK 171 (318)
T ss_dssp CBSSCBCSCEEEEE-TTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEE-CCCSSCEESCEEEE-ETTEEEEECCEESSS
T ss_pred CCCccccccceEEE-CCEEEEEcCccCCCCcccceEEEEeCCCCCEeEC-CCCCCcccccEEEE-ECCEEEEEcCCCCCC
Confidence 22111 1222222 55666677653 3588999987643322 1111111 12222 3566666654 2
Q ss_pred ---CeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcC-----CeEEEEECCCCcEEEeccCCCC--eeE
Q 003236 745 ---ELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCY-----ETLELWNMTENKTLTLSAHDKL--VSS 814 (837)
Q Consensus 745 ---g~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fspdg~~L~sgs~d-----g~I~IwDl~s~~~~~l~~h~~~--V~s 814 (837)
..+.+||+.+.. ...+......... .+++.. ++..+++|+.+ ..+.+||+.+.+...+.....+ -.+
T Consensus 172 ~~~~~~~~yd~~~~~-W~~~~~~p~~r~~-~~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~ 248 (318)
T 2woz_A 172 KCTNRVFIYNPKKGD-WKDLAPMKTPRSM-FGVAIH-KGKIVIAGGVTEDGLSASVEAFDLKTNKWEVMTEFPQERSSIS 248 (318)
T ss_dssp CBCCCEEEEETTTTE-EEEECCCSSCCBS-CEEEEE-TTEEEEEEEEETTEEEEEEEEEETTTCCEEECCCCSSCCBSCE
T ss_pred CccceEEEEcCCCCE-EEECCCCCCCccc-ceEEEE-CCEEEEEcCcCCCCccceEEEEECCCCeEEECCCCCCcccceE
Confidence 258999988752 1122111111111 222222 55666666653 3688999998876644322111 112
Q ss_pred EEEeCCCCEEEEEECC
Q 003236 815 LAASTVNGMVASASHD 830 (837)
Q Consensus 815 la~spdg~~LaSgs~D 830 (837)
++ ..++++++.|+.+
T Consensus 249 ~~-~~~~~i~v~GG~~ 263 (318)
T 2woz_A 249 LV-SLAGSLYAIGGFA 263 (318)
T ss_dssp EE-EETTEEEEECCBC
T ss_pred EE-EECCEEEEECCee
Confidence 22 2356777777754
|
| >1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A | Back alignment and structure |
|---|
Probab=96.56 E-value=0.086 Score=55.68 Aligned_cols=215 Identities=6% Similarity=-0.052 Sum_probs=104.8
Q ss_pred CCCEEEEEeC----CCeEEEEEcCCCCceeEEeeccccceEEEEEcCCCCeEEEEEeC----C-----CcEEEEECCCCe
Q 003236 608 SLSRLATSSA----DRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDN----N-----SEIRYWSINNGS 674 (837)
Q Consensus 608 dg~~Latgs~----Dg~I~IWDl~~~~~~~~~~~~h~~~V~sl~fspdg~~llasgs~----D-----g~I~vwDl~t~~ 674 (837)
++.+++.|+. -..+.+||..+..............-.+++.. ++.+++.|+. + ..+.+||+.+.+
T Consensus 24 ~~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~ 101 (308)
T 1zgk_A 24 GRLIYTAGGYFRQSLSYLEAYNPSNGTWLRLADLQVPRSGLAGCVV--GGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQ 101 (308)
T ss_dssp CCCEEEECCBSSSBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCEEEETTEEEECCCEEEEETTTTE
T ss_pred CCEEEEEeCcCCCCcceEEEEcCCCCeEeECCCCCcccccceEEEE--CCEEEEECCCcCCCCCCeecceEEEECCCCCe
Confidence 4455555553 23578888876543211111111111122222 3456666664 2 468899998776
Q ss_pred eeeEEecCCC--eeEEEEecCCCEEEEEEcC-----CeEEEEECCCCeEEEE--EcCCCCCEEEEEEcCCCCEEEEEe-C
Q 003236 675 CAGVFKCQSG--ATQMRFQPRLGRILAAAIE-----NYISILDVETQVCRLK--LQGHKNQVHSVCWNTSGEYLASVS-D 744 (837)
Q Consensus 675 ~i~~~~~~~~--i~sl~~sp~g~~llags~d-----g~I~iwDl~s~~~~~~--l~~h~~~V~sl~~spdg~~Lasgs-D 744 (837)
-...-..... -.+++.. ++..++.|+.+ ..+.+||+.+.+-... +........++.+ ++.+++.|+ +
T Consensus 102 W~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~ 178 (308)
T 1zgk_A 102 WSPCAPMSVPRNRIGVGVI-DGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVL--NRLLYAVGGFD 178 (308)
T ss_dssp EEECCCCSSCCBTCEEEEE-TTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCBC
T ss_pred EeECCCCCcCccccEEEEE-CCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccceEEEEE--CCEEEEEeCCC
Confidence 4333222111 1122222 45555565533 4688999987643322 1111112222222 566666665 3
Q ss_pred -----CeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcC-----CeEEEEECCCCcEEEeccCCCC--e
Q 003236 745 -----ELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCY-----ETLELWNMTENKTLTLSAHDKL--V 812 (837)
Q Consensus 745 -----g~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fspdg~~L~sgs~d-----g~I~IwDl~s~~~~~l~~h~~~--V 812 (837)
..+.+||+.+.. ...+..+....... +++.. ++..+++|+.+ ..+.+||+.+.+...+.....+ -
T Consensus 179 ~~~~~~~~~~yd~~~~~-W~~~~~~p~~r~~~-~~~~~-~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~ 255 (308)
T 1zgk_A 179 GTNRLNSAECYYPERNE-WRMITAMNTIRSGA-GVCVL-HNCIYAAGGYDGQDQLNSVERYDVETETWTFVAPMKHRRSA 255 (308)
T ss_dssp SSCBCCCEEEEETTTTE-EEECCCCSSCCBSC-EEEEE-TTEEEEECCBCSSSBCCCEEEEETTTTEEEECCCCSSCCBS
T ss_pred CCCcCceEEEEeCCCCe-EeeCCCCCCccccc-eEEEE-CCEEEEEeCCCCCCccceEEEEeCCCCcEEECCCCCCCccc
Confidence 368899987652 11111111111112 22222 55666666654 4699999998876644322111 1
Q ss_pred eEEEEeCCCCEEEEEECCC
Q 003236 813 SSLAASTVNGMVASASHDK 831 (837)
Q Consensus 813 ~sla~spdg~~LaSgs~DG 831 (837)
.+++. -++++++.|+.++
T Consensus 256 ~~~~~-~~~~i~v~GG~~~ 273 (308)
T 1zgk_A 256 LGITV-HQGRIYVLGGYDG 273 (308)
T ss_dssp CEEEE-ETTEEEEECCBCS
T ss_pred eEEEE-ECCEEEEEcCcCC
Confidence 12222 3577777877553
|
| >3iot_A Maltose-binding protein, huntingtin fusion protei; HTT-EX1, HD, sugar transport, transport, apoptos disease mutation, nucleus; 3.50A {Escherichia coli k-12} PDB: 3io6_A 3io4_A 3ior_A 3iou_A 3iov_A 3iow_A | Back alignment and structure |
|---|
Probab=96.54 E-value=0.0022 Score=72.47 Aligned_cols=25 Identities=12% Similarity=0.304 Sum_probs=11.0
Q ss_pred hhHHHHHHHHHHh-hccccccchhhh
Q 003236 53 FEWWSVFWDIFIA-RTNEKHSESAAS 77 (837)
Q Consensus 53 ~eww~~fwd~f~a-~~~~~~s~~~~~ 77 (837)
-+.|.++.+.+.. -.+....+.+..
T Consensus 337 ~~~~~~~~~~~~~~~~G~~~~eeal~ 362 (449)
T 3iot_A 337 SAFWYAVRTAVINAASGRQTVDAALA 362 (449)
T ss_dssp HHHHHHHHHHHHHHHHTSSCHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCCHHHHHH
Confidence 4455555554443 233333343333
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=96.43 E-value=0.079 Score=66.57 Aligned_cols=235 Identities=12% Similarity=0.168 Sum_probs=141.3
Q ss_pred EEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeEEeecc-
Q 003236 561 CHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGH- 639 (837)
Q Consensus 561 l~fSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~~~~~~~~~~~h- 639 (837)
.-.+|..+.||.-. ..++.|||+++...+..+.- ...|..=.|-.+. .|+..+ +..|+-|++.....+.+.+..|
T Consensus 71 AIMnP~~~iiALra-g~~lQiFnl~~k~klks~~~-~e~VvfWkWis~~-~l~lVT-~~aVyHW~~~~~s~P~k~fdR~~ 146 (1630)
T 1xi4_A 71 AIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTM-TDDVTFWKWISLN-TVALVT-DNAVYHWSMEGESQPVKMFDRHS 146 (1630)
T ss_pred hccCCCcceEEEec-CCeEEEeehHHhhhhccccc-CCCceEEEecCCC-eeEEEc-CCeEEEeccCCCCccHHHHhcch
Confidence 34567777777654 67899999998877777654 3456666776543 344442 4579999998656666666655
Q ss_pred ---ccceEEEEEcCCCCeEEEEEe------CCCcEEEEECCCCeeeeEEecCC-CeeEEEE--ecCCCEEEEEEc----C
Q 003236 640 ---STTVMSLDFHPSKEDLLCSCD------NNSEIRYWSINNGSCAGVFKCQS-GATQMRF--QPRLGRILAAAI----E 703 (837)
Q Consensus 640 ---~~~V~sl~fspdg~~llasgs------~Dg~I~vwDl~t~~~i~~~~~~~-~i~sl~~--sp~g~~llags~----d 703 (837)
...|.....+++.+.++++|= ..|.+.+|.++.+..- .+.++. ....+.. .+....+++-.. .
T Consensus 147 ~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~~sQ-~iegha~~F~~~~~~~~~~~~~l~~f~~~~~~g 225 (1630)
T 1xi4_A 147 SLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQ-PIEGHAASFAQFKMEGNAEESTLFCFAVRGQAG 225 (1630)
T ss_pred hcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeecccccch-hhhHhHhhhheeccCCCCCCceEEEEEEecCCC
Confidence 456777788888888887663 3477888887754321 111110 0111111 011112222221 2
Q ss_pred CeEEEEECCCC---eE------EEEEcC---CCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCc
Q 003236 704 NYISILDVETQ---VC------RLKLQG---HKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNK 770 (837)
Q Consensus 704 g~I~iwDl~s~---~~------~~~l~~---h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~ 770 (837)
+.+.|.++... .. +..+.. ..+-..++..++.-.++...+ -|.|.+||+.++ .++..-......
T Consensus 226 ~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g~iy~itk~G~~~~~d~~t~---~~i~~~ris~~~ 302 (1630)
T 1xi4_A 226 GKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETG---TCIYMNRISGET 302 (1630)
T ss_pred ceEEEEecCCCccCCCCCccccccccCCcccccCcceEEEeccccCEEEEEecCceEEEEecccc---hhhhhccccCCc
Confidence 68888887542 11 111111 122344666677666666666 899999999998 666665555666
Q ss_pred eEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE
Q 003236 771 FHSCVFHPTFPSLLVIGCYETLELWNMTENKTL 803 (837)
Q Consensus 771 I~sv~fspdg~~L~sgs~dg~I~IwDl~s~~~~ 803 (837)
|...+.+....-+++....|.|.-..+....++
T Consensus 303 iF~~~~~~~~~g~~~vnr~G~vl~v~v~~~~iv 335 (1630)
T 1xi4_A 303 IFVTAPHEATAGIIGVNRKGQVLSVCVEEENII 335 (1630)
T ss_pred eEEeccCCCCCceEEEcCCceEEEEEEccchhh
Confidence 665555554445666667777776666666554
|
| >2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=96.37 E-value=0.22 Score=53.61 Aligned_cols=185 Identities=10% Similarity=-0.028 Sum_probs=91.2
Q ss_pred CCCEEEEEEC-C---------CcEEEEeCCCCeEEEEeccC-CC--CeEEEEEcCCCCEEEEEeCC--------------
Q 003236 566 DGKLLATGGH-D---------KKAVLWCTESFTVKSTLEEH-TQ--WITDVRFSPSLSRLATSSAD-------------- 618 (837)
Q Consensus 566 dg~~Lasgs~-D---------g~I~VWd~~t~~~~~~l~~h-~~--~I~~l~fspdg~~Latgs~D-------------- 618 (837)
++++++.|+. + ..+.+||..+.+-...-... .. ...++. .++++++.|+.+
T Consensus 65 ~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~~~~ 142 (357)
T 2uvk_A 65 DGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTNSWVKLMSHAPMGMAGHVTFV--HNGKAYVTGGVNQNIFNGYFEDLNEA 142 (357)
T ss_dssp TTEEEEECCEEECTTSCEEECCCEEEEETTTTEEEECSCCCSSCCSSEEEEE--ETTEEEEEECCCHHHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCCCccceeeccEEEEeCCCCcEEECCCCCCcccccceEEE--ECCEEEEEeCcCCCcCcccccchhhc
Confidence 5677777765 2 46889998876544322111 11 122222 467777888764
Q ss_pred -------------------------CeEEEEEcCCCCceeEEeeccccce-EEEEEcCCCCeEEEEEeC------CCcEE
Q 003236 619 -------------------------RTVRVWDTENPDYSLRTFTGHSTTV-MSLDFHPSKEDLLCSCDN------NSEIR 666 (837)
Q Consensus 619 -------------------------g~I~IWDl~~~~~~~~~~~~h~~~V-~sl~fspdg~~llasgs~------Dg~I~ 666 (837)
..+.+||+.+.......-....... .+++.. ++.+++.|+. ...+.
T Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~~~~~~~~~~--~~~iyv~GG~~~~~~~~~~v~ 220 (357)
T 2uvk_A 143 GKDSTAIDKINAHYFDKKAEDYFFNKFLLSFDPSTQQWSYAGESPWYGTAGAAVVNK--GDKTWLINGEAKPGLRTDAVF 220 (357)
T ss_dssp TTCHHHHHHHHHHHHSSCGGGGCCCCEEEEEETTTTEEEEEEECSSCCCBSCEEEEE--TTEEEEECCEEETTEECCCEE
T ss_pred CCcccchhhhhhhhccccccccCCcccEEEEeCCCCcEEECCCCCCCCcccccEEEE--CCEEEEEeeecCCCcccCceE
Confidence 5789999987654322211111111 233333 3456666653 34677
Q ss_pred EEEC--CCCeeeeEEec--CC-CeeEEEEecCCCEEEEEEcC----------------------CeEEEEECCCC--eEE
Q 003236 667 YWSI--NNGSCAGVFKC--QS-GATQMRFQPRLGRILAAAIE----------------------NYISILDVETQ--VCR 717 (837)
Q Consensus 667 vwDl--~t~~~i~~~~~--~~-~i~sl~~sp~g~~llags~d----------------------g~I~iwDl~s~--~~~ 717 (837)
+||+ .+.+-...-.. .. .....+...++..++.|+.+ ..+.+||+.+. ..+
T Consensus 221 ~~d~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~W~~~ 300 (357)
T 2uvk_A 221 ELDFTGNNLKWNKLAPVSSPDGVAGGFAGISNDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWDKS 300 (357)
T ss_dssp EEECC---CEEEECCCSSTTTCCBSCEEEEETTEEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC---CEEE
T ss_pred EEEecCCCCcEEecCCCCCCcccccceEEEECCEEEEEcCccccCCcccccccceeccccccceeeEEEEecCCCceeeC
Confidence 8887 44332222111 11 11222233355666666532 25788998865 344
Q ss_pred EEEcCCCCCEEEEEEcCCCCEEEEEe-CC------eEEEEEcCCCC
Q 003236 718 LKLQGHKNQVHSVCWNTSGEYLASVS-DE------LVRVWSIGSGS 756 (837)
Q Consensus 718 ~~l~~h~~~V~sl~~spdg~~Lasgs-Dg------~I~IwDl~s~~ 756 (837)
..+........++. -++++++.|+ ++ .|.++++++++
T Consensus 301 ~~~p~~r~~~~~~~--~~~~i~v~GG~~~~~~~~~~v~~l~~~~~~ 344 (357)
T 2uvk_A 301 GELSQGRAYGVSLP--WNNSLLIIGGETAGGKAVTDSVLITVKDNK 344 (357)
T ss_dssp EECSSCCBSSEEEE--ETTEEEEEEEECGGGCEEEEEEEEEC-CCS
T ss_pred CCCCCCcccceeEE--eCCEEEEEeeeCCCCCEeeeEEEEEEcCcE
Confidence 33332222222222 3566666665 32 46666877763
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=96.30 E-value=0.2 Score=63.10 Aligned_cols=218 Identities=10% Similarity=0.174 Sum_probs=130.4
Q ss_pred CCcEEEEeCCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeEEeeccccceEEEEEcCCCCeE
Q 003236 576 DKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDL 655 (837)
Q Consensus 576 Dg~I~VWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~sl~fspdg~~l 655 (837)
...|.|.|+.++..+.+-. -.--+.-.+|..+.||.-. ..++.|||+++... +..+.- ...|.-=.|-.... +
T Consensus 47 ~~~vvIidl~~~~~~~rrp---i~AdsAIMnP~~~iiALra-g~~lQiFnl~~k~k-lks~~~-~e~VvfWkWis~~~-l 119 (1630)
T 1xi4_A 47 QAQVVIIDMNDPSNPIRRP---ISADSAIMNPASKVIALKA-GKTLQIFNIEMKSK-MKAHTM-TDDVTFWKWISLNT-V 119 (1630)
T ss_pred CceEEEEECCCCCCccccc---ccchhhccCCCcceEEEec-CCeEEEeehHHhhh-hccccc-CCCceEEEecCCCe-e
Confidence 3478899988765442211 1112333567666666654 77999999997543 444443 34566666665433 3
Q ss_pred EEEEeCCCcEEEEECCC-CeeeeEEec-----CCCeeEEEEecCCCEEEEEEc-------CCeEEEEECCCCeEEEEEcC
Q 003236 656 LCSCDNNSEIRYWSINN-GSCAGVFKC-----QSGATQMRFQPRLGRILAAAI-------ENYISILDVETQVCRLKLQG 722 (837)
Q Consensus 656 lasgs~Dg~I~vwDl~t-~~~i~~~~~-----~~~i~sl~~sp~g~~llags~-------dg~I~iwDl~s~~~~~~l~~ 722 (837)
.+.+ +..|+.|++.. ..+++.|.. ...|.....+++.++++..+- .|.+.+|..+.+. ...+.|
T Consensus 120 ~lVT--~~aVyHW~~~~~s~P~k~fdR~~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~~-sQ~ieg 196 (1630)
T 1xi4_A 120 ALVT--DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKV-SQPIEG 196 (1630)
T ss_pred EEEc--CCeEEEeccCCCCccHHHHhcchhcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeeccccc-chhhhH
Confidence 2222 56899999964 234444432 345777778888888776553 4788899887543 234455
Q ss_pred CCCCEEEEEEcC---CCCEEEEEe----CCeEEEEEcCCC---CC--c-eeEEEee---cCCCceEEEEEeCCCCEEEEE
Q 003236 723 HKNQVHSVCWNT---SGEYLASVS----DELVRVWSIGSG---SK--G-ECIHELS---CTGNKFHSCVFHPTFPSLLVI 786 (837)
Q Consensus 723 h~~~V~sl~~sp---dg~~Lasgs----Dg~I~IwDl~s~---~~--~-~~i~~~~---~~~~~I~sv~fspdg~~L~sg 786 (837)
|......+.... ...+++.+. .+.++|.++... .. . +.+..+- ....-..++..++....++..
T Consensus 197 ha~~F~~~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g~iy~i 276 (1630)
T 1xi4_A 197 HAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLI 276 (1630)
T ss_pred hHhhhheeccCCCCCCceEEEEEEecCCCceEEEEecCCCccCCCCCccccccccCCcccccCcceEEEeccccCEEEEE
Confidence 655444443321 122333333 268999998653 10 0 1111111 112334567788888899999
Q ss_pred EcCCeEEEEECCCCcEE
Q 003236 787 GCYETLELWNMTENKTL 803 (837)
Q Consensus 787 s~dg~I~IwDl~s~~~~ 803 (837)
+..|.|++||+.++.++
T Consensus 277 tk~G~~~~~d~~t~~~i 293 (1630)
T 1xi4_A 277 TKYGYIHLYDLETGTCI 293 (1630)
T ss_pred ecCceEEEEecccchhh
Confidence 99999999999999876
|
| >3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A | Back alignment and structure |
|---|
Probab=96.20 E-value=0.28 Score=54.17 Aligned_cols=142 Identities=11% Similarity=0.110 Sum_probs=92.1
Q ss_pred CCCCeEEEEEeCCCcEEEEECCCCeeeeEEecC-----CCeeEEEEecCCCEEEEEEcCCeEEEEECCCCe---------
Q 003236 650 PSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ-----SGATQMRFQPRLGRILAAAIENYISILDVETQV--------- 715 (837)
Q Consensus 650 pdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~~-----~~i~sl~~sp~g~~llags~dg~I~iwDl~s~~--------- 715 (837)
.++..+++.- ++.||.-++.....-+.+... ..+..+..+|+|.+++.. .+..|.|..+..+.
T Consensus 30 ~n~t~i~~a~--~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~-g~~~V~Vv~LP~~~~~~~~~~~~ 106 (452)
T 3pbp_A 30 QNGTRIVFIQ--DNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLF-NDNEIFVMEVPWGYSNVEDVSIQ 106 (452)
T ss_dssp TTTTEEEEEE--TTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEE-CSSEEEEEECCTTCSCCCCHHHH
T ss_pred cCCCEEEEEE--CCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEe-cCCeEEEEEecCccccCcccccc
Confidence 3445555443 578888888755444455443 268889999998877766 45688888876221
Q ss_pred ---EEEEEcC------CCCCEEEEEEcCCC---CEEEEEe-CCeEEEEEcCCCCCceeE--------EEeecCCCceEEE
Q 003236 716 ---CRLKLQG------HKNQVHSVCWNTSG---EYLASVS-DELVRVWSIGSGSKGECI--------HELSCTGNKFHSC 774 (837)
Q Consensus 716 ---~~~~l~~------h~~~V~sl~~spdg---~~Lasgs-Dg~I~IwDl~s~~~~~~i--------~~~~~~~~~I~sv 774 (837)
..+.+.- ...+|..+.|+|-+ ..|++-. |+.|++||+..... ++. ..+......|.++
T Consensus 107 ~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~-~P~~L~k~~~~fg~d~~~~ev~S~ 185 (452)
T 3pbp_A 107 DAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQE-KPIVLNKPNNSFGLDARVNDITDL 185 (452)
T ss_dssp HTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTS-CCEEESCCCSEEESCSSCCCEEEE
T ss_pred cccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCC-CCcchhccccccCCCcccceEEEE
Confidence 1222321 25689999999943 4555555 99999999986321 222 1112223678999
Q ss_pred EEeCCCCEEEEEE--cCCeEEEE
Q 003236 775 VFHPTFPSLLVIG--CYETLELW 795 (837)
Q Consensus 775 ~fspdg~~L~sgs--~dg~I~Iw 795 (837)
+|..++-.|++.+ ..|.|+-.
T Consensus 186 ~Fg~~~lTLYvl~~t~~GDIYAl 208 (452)
T 3pbp_A 186 EFSKDGLTLYCLNTTEGGDIFAF 208 (452)
T ss_dssp EECTTSSCEEEEECTTSCEEEEE
T ss_pred EEcCCCcEEEEEecCCCCCEEEE
Confidence 9999988888866 67777643
|
| >3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha} | Back alignment and structure |
|---|
Probab=96.15 E-value=1.2 Score=48.59 Aligned_cols=255 Identities=7% Similarity=-0.028 Sum_probs=121.3
Q ss_pred CCCeEEEEEcC--CCCEEEEEECCC----cEEEEeCCCCeEEEEecc--------------CCCCeEEEEEcC-C-CCEE
Q 003236 555 TSKVESCHFSP--DGKLLATGGHDK----KAVLWCTESFTVKSTLEE--------------HTQWITDVRFSP-S-LSRL 612 (837)
Q Consensus 555 ~~~V~sl~fSp--dg~~Lasgs~Dg----~I~VWd~~t~~~~~~l~~--------------h~~~I~~l~fsp-d-g~~L 612 (837)
...|.+|++.| ++.++| ++..| .|...+ +.++.-..+.. +...|.+|++.| + ...|
T Consensus 54 ~~~v~~i~~dp~~~~~l~~-g~~~g~~g~gl~~s~-D~G~tW~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~l 131 (394)
T 3b7f_A 54 GHTIHHIVQDPREPERMLM-AARTGHLGPTVFRSD-DGGGNWTEATRPPAFNKAPEGETGRVVDHVFWLTPGHASEPGTW 131 (394)
T ss_dssp TSEEEEEEECSSSTTCEEE-EEEC--CCEEEEEES-STTSCCEECSBCCCCCCCC----CCCCCEEEEEEECCTTSTTCE
T ss_pred CCceEEEEECCCCCCeEEE-EecCCCCCccEEEeC-CCCCCceECCccccCCCcccccccccccceeEEEeCCCCCCCEE
Confidence 34699999998 555554 44444 344332 22322222211 112578899987 2 4566
Q ss_pred EEEeCCCeEEEEEcCCCCceeEEeec-------------------cccceEEEEEcCCC-CeEEEEEeCCCcEEEEECCC
Q 003236 613 ATSSADRTVRVWDTENPDYSLRTFTG-------------------HSTTVMSLDFHPSK-EDLLCSCDNNSEIRYWSINN 672 (837)
Q Consensus 613 atgs~Dg~I~IWDl~~~~~~~~~~~~-------------------h~~~V~sl~fspdg-~~llasgs~Dg~I~vwDl~t 672 (837)
+.+...+.|...+ ++......+.. ....|.+|.++|.. ..+++... ++.|...+ ..
T Consensus 132 ~~g~~~ggl~~S~--DgG~tW~~~~~~~~~p~~~~~~~~~~~g~~~~~~i~~i~~d~~~~~~l~vg~~-~ggl~~s~-Dg 207 (394)
T 3b7f_A 132 YAGTSPQGLFRST--DHGASWEPVAGFNDHPMRRAWTGGEQDGTPDGPKMHSILVDPRDPKHLYIGMS-SGGVFEST-DA 207 (394)
T ss_dssp EEEEETTEEEEES--STTSBCEECHHHHTCTTHHHHHCCC----CCCCEEEEEEECTTCTTCEEEEEE-TBEEEEES-ST
T ss_pred EEEecCCcEEEEc--CCCCCeEECcCccCCccccccccccccCCCCCCceeEEEECCCCCCEEEEEEC-CCCEEEEC-CC
Confidence 6666666555443 22221222211 12357899999843 34444333 44444332 22
Q ss_pred CeeeeEEec--------------CCCeeEEEEecC-CCEEEEEEcCCeEEEEECCCCeEEEEEcC--CC---CCEEEEEE
Q 003236 673 GSCAGVFKC--------------QSGATQMRFQPR-LGRILAAAIENYISILDVETQVCRLKLQG--HK---NQVHSVCW 732 (837)
Q Consensus 673 ~~~i~~~~~--------------~~~i~sl~~sp~-g~~llags~dg~I~iwDl~s~~~~~~l~~--h~---~~V~sl~~ 732 (837)
++.-..+.. ...+.++.+.+. .+.++++.. +.|...+-. ++.-..+.. .. ..+.++++
T Consensus 208 G~tW~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~~-~gl~~s~D~-G~tW~~~~~~l~~~~~~~~~~i~~ 285 (394)
T 3b7f_A 208 GTDWKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQNH-CGIYRMDRR-EGVWKRIGDAMPREVGDIGFPIVV 285 (394)
T ss_dssp TSSCEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEET-TEEEEEETT-TTEEECGGGGSCTTTCSCEEEEEE
T ss_pred CCCceECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEcC-CeEEEeCCC-CCcceECCCCCCCCCccceEEEEE
Confidence 222222111 123788888886 366666654 445554432 222222221 11 34667888
Q ss_pred cCC--CCEEEEEe-----------CCeEEEEEcCCC-CCceeEEE-eecCCC----ceEEEEEeCCC-CEEEEEEcCCeE
Q 003236 733 NTS--GEYLASVS-----------DELVRVWSIGSG-SKGECIHE-LSCTGN----KFHSCVFHPTF-PSLLVIGCYETL 792 (837)
Q Consensus 733 spd--g~~Lasgs-----------Dg~I~IwDl~s~-~~~~~i~~-~~~~~~----~I~sv~fspdg-~~L~sgs~dg~I 792 (837)
+|. +.+++... ++...||....+ .....+.. +..... ....++++|.. ..|++++.++.|
T Consensus 286 ~p~~~~~l~~~t~~~~~~w~~~~~~~~~~~~~S~DgG~tW~~~~~glp~~~~~~~~~~~~~~~~p~~~~~l~~g~~~g~l 365 (394)
T 3b7f_A 286 HQRDPRTVWVFPMDGSDVWPRVSPGGKPAVYVTRDAGESWQRQDRGLPTDQAWLTVKRQAMTADAHAPVGVYFGTTGGEI 365 (394)
T ss_dssp CSSCTTCEEEEECBCCSSTTCCBCCSSCCEEEESSTTSCCEEECBTSCCSSCCCCCCTBSEEECCSSSCCEEEECTTSCE
T ss_pred CCCCCCEEEEEeccCCccceeecCCCceeEEEECCCCCCceECCCCCCCccccceEEEEEEEECCCCCCEEEEEeCCCeE
Confidence 763 34444331 233456655543 22222211 111000 11357788753 457777666666
Q ss_pred EEEECCCCc-EEEeccCCCCeeEEEEe
Q 003236 793 ELWNMTENK-TLTLSAHDKLVSSLAAS 818 (837)
Q Consensus 793 ~IwDl~s~~-~~~l~~h~~~V~sla~s 818 (837)
+.-+ ..++ ...+..+-..|.+|+|.
T Consensus 366 ~~S~-D~G~tW~~~~~~lp~~~~v~~~ 391 (394)
T 3b7f_A 366 WASA-DEGEHWQCIASHLPHIYAVQSA 391 (394)
T ss_dssp EEES-STTSBCEEEECSCSCEEEEEEE
T ss_pred EEEC-CCCCCceEcccCCCCeeEEEEe
Confidence 5433 3333 22444444567777764
|
| >1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A* | Back alignment and structure |
|---|
Probab=96.08 E-value=0.39 Score=48.42 Aligned_cols=174 Identities=14% Similarity=0.007 Sum_probs=96.8
Q ss_pred CeEEEEEeCCCcEEEEECCCCe------eeeEEec--CCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeE------EE
Q 003236 653 EDLLCSCDNNSEIRYWSINNGS------CAGVFKC--QSGATQMRFQPRLGRILAAAIENYISILDVETQVC------RL 718 (837)
Q Consensus 653 ~~llasgs~Dg~I~vwDl~t~~------~i~~~~~--~~~i~sl~~sp~g~~llags~dg~I~iwDl~s~~~------~~ 718 (837)
+.+|++...| +|+.=....+. ....+.. -..+..++|+|++. |+++ .+|.++-.+..+... -.
T Consensus 4 ~~~l~~v~~d-~~y~G~~P~~~~~~~~~~a~~iG~~gw~~~~~laf~P~G~-LYaV-~~G~Ly~~~~~t~~~~~W~~s~t 80 (236)
T 1tl2_A 4 ESMLRGVYQD-KFYQGTYPQNKNDNWLARATLIGKGGWSNFKFLFLSPGGE-LYGV-LNDKIYKGTPPTHDNDNWMGRAK 80 (236)
T ss_dssp CCCEEEEETT-EEEEESCCCSTTCCHHHHSEEEESSSCTTCSEEEECTTSC-EEEE-ETTEEEEESCCCSTTCCHHHHCE
T ss_pred ceEEEEEeCC-cEEecCCCCCcccchhhhccccCccccccceeEEECCCcc-EEEE-eCCeEEEECCCCCCccccccccc
Confidence 3455566656 55554443333 1122222 24678999999766 4444 888888887755111 11
Q ss_pred EEc-CCCCCEEEEEEcCCCCEEEEEeCCeEEEEEcCCCCCcee----EEEeecCCCceEEEEEeCCCCEEEEEEcCCeEE
Q 003236 719 KLQ-GHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGEC----IHELSCTGNKFHSCVFHPTFPSLLVIGCYETLE 793 (837)
Q Consensus 719 ~l~-~h~~~V~sl~~spdg~~LasgsDg~I~IwDl~s~~~~~~----i~~~~~~~~~I~sv~fspdg~~L~sgs~dg~I~ 793 (837)
.+- .--....++.|+++|.+.++ +||.|+-++-.+.....- ...-...-..+..+.|.|+|... ++. ++.++
T Consensus 81 ~IG~~Gw~~F~a~~fD~~G~LYav-~dG~iyr~~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Ly-av~-dg~ly 157 (236)
T 1tl2_A 81 KIGNGGWNQFQFLFFDPNGYLYAV-SKDKLYKASPPQSDTDNWIARATEVGSGGWSGFKFLFFHPNGYLY-AVH-GQQFY 157 (236)
T ss_dssp EEECSCGGGCSEEEECTTSCEEEE-ETTEEEEESCCCSTTCCHHHHSEEEECSSGGGEEEEEECTTSCEE-EEE-TTEEE
T ss_pred EecccccccceEEEECCCCCEEEe-CCCEEEEeCCCcCCCCceeccccEeccCCCCceEEEEECCCceEE-EEe-CCcEE
Confidence 111 01112478999999999888 889888776533221111 11111122568999999999844 444 77765
Q ss_pred EEECCCCcE------EEe-c-cCCCCeeEEEEeCCCCEEEEEECCCcEE
Q 003236 794 LWNMTENKT------LTL-S-AHDKLVSSLAASTVNGMVASASHDKCVK 834 (837)
Q Consensus 794 IwDl~s~~~------~~l-~-~h~~~V~sla~spdg~~LaSgs~DG~I~ 834 (837)
-.....+.. ... . ..-.....+.|.+++.+.++. +|.|+
T Consensus 158 r~~~P~~~~~~wl~~~~~~g~~g~~~yr~l~f~~~G~l~~v~--~g~~Y 204 (236)
T 1tl2_A 158 KALPPVSNQDNWLARATKIGQGGWDTFKFLFFSSVGTLFGVQ--GGKFY 204 (236)
T ss_dssp EECCCSSTTCCHHHHCEEEESSSGGGEEEEEECTTSCEEEEE--TTEEE
T ss_pred ecCCCCCCCcccccccceeccCCcceEEEEEECCCCcEEEEe--CCeEE
Confidence 443332210 011 1 222344557788888777665 77553
|
| >2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* | Back alignment and structure |
|---|
Probab=96.02 E-value=0.15 Score=60.69 Aligned_cols=222 Identities=5% Similarity=-0.001 Sum_probs=110.6
Q ss_pred CCCEEEEEeCC----CeEEEEEcCCCCceeEEee------ccccceEEEEEcCCCCeEEEEEeCC------CcEEEEECC
Q 003236 608 SLSRLATSSAD----RTVRVWDTENPDYSLRTFT------GHSTTVMSLDFHPSKEDLLCSCDNN------SEIRYWSIN 671 (837)
Q Consensus 608 dg~~Latgs~D----g~I~IWDl~~~~~~~~~~~------~h~~~V~sl~fspdg~~llasgs~D------g~I~vwDl~ 671 (837)
++.+++.|+.+ ..+.+||..+......... .....-.+++....++.+++.|+.+ ..+.+||+.
T Consensus 397 ~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~~ 476 (695)
T 2zwa_A 397 GNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDMK 476 (695)
T ss_dssp SSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSSTTCBCCCCEEEETT
T ss_pred CCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCCCCCccccEEEEeCC
Confidence 34444444432 3577888877654322201 1111122333333124466666643 358899998
Q ss_pred CCeeeeEEec--CCCeeEEEEecCCCEEEEEEcCC--eEEEEECCCCeEEEEE-----cCCCCCEEEEEEcCC-CCEEEE
Q 003236 672 NGSCAGVFKC--QSGATQMRFQPRLGRILAAAIEN--YISILDVETQVCRLKL-----QGHKNQVHSVCWNTS-GEYLAS 741 (837)
Q Consensus 672 t~~~i~~~~~--~~~i~sl~~sp~g~~llags~dg--~I~iwDl~s~~~~~~l-----~~h~~~V~sl~~spd-g~~Las 741 (837)
+.+-...-.. ...-.+++...++..++.|+.++ .+.+||..+..-...- ........++.+..+ +++++.
T Consensus 477 t~~W~~~~~~p~~R~~h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~~~~~~iyv~ 556 (695)
T 2zwa_A 477 TREWSMIKSLSHTRFRHSACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPVSKQGIIL 556 (695)
T ss_dssp TTEEEECCCCSBCCBSCEEEECTTSCEEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGSCCBSCEEEEETTTTEEEEE
T ss_pred CCcEEECCCCCCCcccceEEEEcCCEEEEECCCCCCCCEEEEECCCCceEEccCCCCCCCcccceeEEEEeCCCCEEEEE
Confidence 8654333221 11223333334777788877654 7999999886533221 111222233555555 566666
Q ss_pred Ee---C-----CeEEEEEcCCCCC-----ceeEEEeecCCCceEEEEEeCCCCEEEEEEcC--------CeEEEEECCCC
Q 003236 742 VS---D-----ELVRVWSIGSGSK-----GECIHELSCTGNKFHSCVFHPTFPSLLVIGCY--------ETLELWNMTEN 800 (837)
Q Consensus 742 gs---D-----g~I~IwDl~s~~~-----~~~i~~~~~~~~~I~sv~fspdg~~L~sgs~d--------g~I~IwDl~s~ 800 (837)
|+ + +.+.+||+.+..- ...+.........-.+++...++..+++|+.+ ..|.+||+.+.
T Consensus 557 GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~t~ 636 (695)
T 2zwa_A 557 GGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQIKYITPRKLLIVGGTSPSGLFDRTNSIISLDPLSE 636 (695)
T ss_dssp CCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSCEEEEEETTEEEEECCBCSSCCCCTTTSEEEEETTTT
T ss_pred CCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccceEEEeCCCEEEEECCccCCCCCCCCCeEEEEECCCC
Confidence 65 2 3589999988741 12222211111122233444436666666642 46999999988
Q ss_pred cEEEeccCC--------CCe-eEEEEeCCCCEEEEEEC
Q 003236 801 KTLTLSAHD--------KLV-SSLAASTVNGMVASASH 829 (837)
Q Consensus 801 ~~~~l~~h~--------~~V-~sla~spdg~~LaSgs~ 829 (837)
+........ ..+ .++....++++++.|+.
T Consensus 637 ~W~~~~~p~~~~~~~~p~~~gh~~~~~~~g~i~v~GGg 674 (695)
T 2zwa_A 637 TLTSIPISRRIWEDHSLMLAGFSLVSTSMGTIHIIGGG 674 (695)
T ss_dssp EEEECCCCHHHHHHSCCCCSSCEEECC---CEEEECCE
T ss_pred eEEEeeccccccCCCCccceeeeEEEeCCCEEEEEeCC
Confidence 765321110 000 23333455577777764
|
| >1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A* | Back alignment and structure |
|---|
Probab=96.01 E-value=0.24 Score=49.97 Aligned_cols=177 Identities=10% Similarity=-0.079 Sum_probs=95.8
Q ss_pred CCCEEEEEeCCCeEEEEEcCCCCc-----eeEEeec-cccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeeEEec
Q 003236 608 SLSRLATSSADRTVRVWDTENPDY-----SLRTFTG-HSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC 681 (837)
Q Consensus 608 dg~~Latgs~Dg~I~IWDl~~~~~-----~~~~~~~-h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~ 681 (837)
....|++...| +|++=....... ....+.. -=..+.+++|+|++. +.+. .+|.++-.+..+.....-+..
T Consensus 3 ~~~~l~~v~~d-~~y~G~~P~~~~~~~~~~a~~iG~~gw~~~~~laf~P~G~-LYaV--~~G~Ly~~~~~t~~~~~W~~s 78 (236)
T 1tl2_A 3 GESMLRGVYQD-KFYQGTYPQNKNDNWLARATLIGKGGWSNFKFLFLSPGGE-LYGV--LNDKIYKGTPPTHDNDNWMGR 78 (236)
T ss_dssp CCCCEEEEETT-EEEEESCCCSTTCCHHHHSEEEESSSCTTCSEEEECTTSC-EEEE--ETTEEEEESCCCSTTCCHHHH
T ss_pred cceEEEEEeCC-cEEecCCCCCcccchhhhccccCccccccceeEEECCCcc-EEEE--eCCeEEEECCCCCCccccccc
Confidence 34567777777 655544443321 1112211 124678999999876 4434 578777777654222111111
Q ss_pred CC--------CeeEEEEecCCCEEEEEEcCCeEEEEECCCCe-------EEEEEcCCCCCEEEEEEcCCCCEEEEEeCCe
Q 003236 682 QS--------GATQMRFQPRLGRILAAAIENYISILDVETQV-------CRLKLQGHKNQVHSVCWNTSGEYLASVSDEL 746 (837)
Q Consensus 682 ~~--------~i~sl~~sp~g~~llags~dg~I~iwDl~s~~-------~~~~l~~h~~~V~sl~~spdg~~LasgsDg~ 746 (837)
.. ....+.|.+++...++ .||.|+-++..+.. ....-..--..+..|.|.|+|.+.++. |+.
T Consensus 79 ~t~IG~~Gw~~F~a~~fD~~G~LYav--~dG~iyr~~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~-dg~ 155 (236)
T 1tl2_A 79 AKKIGNGGWNQFQFLFFDPNGYLYAV--SKDKLYKASPPQSDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH-GQQ 155 (236)
T ss_dssp CEEEECSCGGGCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE-TTE
T ss_pred ccEecccccccceEEEECCCCCEEEe--CCCEEEEeCCCcCCCCceeccccEeccCCCCceEEEEECCCceEEEEe-CCc
Confidence 11 1478889998776666 66999888763311 011111122467999999999999988 887
Q ss_pred EEEEEcCCCCCc---eeEEEee-cCCCceEEEEEeCCCCEEEEEEcCCeEE
Q 003236 747 VRVWSIGSGSKG---ECIHELS-CTGNKFHSCVFHPTFPSLLVIGCYETLE 793 (837)
Q Consensus 747 I~IwDl~s~~~~---~~i~~~~-~~~~~I~sv~fspdg~~L~sgs~dg~I~ 793 (837)
++-+...+.... .....+. ..-.....+.|.+++...++. ++.++
T Consensus 156 lyr~~~P~~~~~~wl~~~~~~g~~g~~~yr~l~f~~~G~l~~v~--~g~~Y 204 (236)
T 1tl2_A 156 FYKALPPVSNQDNWLARATKIGQGGWDTFKFLFFSSVGTLFGVQ--GGKFY 204 (236)
T ss_dssp EEEECCCSSTTCCHHHHCEEEESSSGGGEEEEEECTTSCEEEEE--TTEEE
T ss_pred EEecCCCCCCCcccccccceeccCCcceEEEEEECCCCcEEEEe--CCeEE
Confidence 543322211100 0111111 222344556788888755544 66443
|
| >2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A | Back alignment and structure |
|---|
Probab=95.55 E-value=4.1 Score=45.73 Aligned_cols=231 Identities=10% Similarity=0.018 Sum_probs=113.9
Q ss_pred CeEEEEEcCCCC-EEEEEECCCcEEEEeCCCC---eEEEEec---------cCCCCeEEEEEcCC----CCEEEEEeC--
Q 003236 557 KVESCHFSPDGK-LLATGGHDKKAVLWCTESF---TVKSTLE---------EHTQWITDVRFSPS----LSRLATSSA-- 617 (837)
Q Consensus 557 ~V~sl~fSpdg~-~Lasgs~Dg~I~VWd~~t~---~~~~~l~---------~h~~~I~~l~fspd----g~~Latgs~-- 617 (837)
.-+.|+|.|||. .|+++...|.|++++.... ..+..+. ........|+|+|+ +.+.++-+.
T Consensus 15 ~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt~~~ 94 (463)
T 2wg3_C 15 QPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYTTNQ 94 (463)
T ss_dssp SEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEEEECC
T ss_pred CceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEEeCCC
Confidence 467899999996 4555678899999975422 1222221 11456889999996 333333222
Q ss_pred C----------CeEEEEEcCCC---------CceeEEee--ccccceEEEEEcCCCCeEEEEEeCC--------------
Q 003236 618 D----------RTVRVWDTENP---------DYSLRTFT--GHSTTVMSLDFHPSKEDLLCSCDNN-------------- 662 (837)
Q Consensus 618 D----------g~I~IWDl~~~---------~~~~~~~~--~h~~~V~sl~fspdg~~llasgs~D-------------- 662 (837)
+ ..|.-|.+... ...+..+. ........|.|.|||..++.+|+..
T Consensus 95 ~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG~LYv~~Gd~~~~~~~~~~~q~~~~ 174 (463)
T 2wg3_C 95 ERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDGFLYIILGDGMITLDDMEEMDGLSD 174 (463)
T ss_dssp CSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTTSCEEEEECCTTCCHHHHHHCTTCCS
T ss_pred CCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCCCcEEEEeCCCCCCCCccccccCcCC
Confidence 1 14555665421 11122221 1123467899999987555444321
Q ss_pred --CcEEEEECCCC------e-------------eeeEEe-cCCCeeEEEEecCC-----C-EEEEEEcCC----eEEEEE
Q 003236 663 --SEIRYWSINNG------S-------------CAGVFK-CQSGATQMRFQPRL-----G-RILAAAIEN----YISILD 710 (837)
Q Consensus 663 --g~I~vwDl~t~------~-------------~i~~~~-~~~~i~sl~~sp~g-----~-~llags~dg----~I~iwD 710 (837)
|.|.-.|.... . ....+. .......++|.|.. . .++++...+ .-.|..
T Consensus 175 ~~GkIlRi~~dg~~~~~~y~iP~dNPf~~~~~~~~eI~a~G~RNp~gla~dp~tg~~~G~l~~~~~D~~G~~~~~~ei~~ 254 (463)
T 2wg3_C 175 FTGSVLRLDVDTDMCNVPYSIPRSNPHFNSTNQPPEVFAHGLHDPGRCAVDRHPTDININLTILCSDSNGKNRSSARILQ 254 (463)
T ss_dssp CTTEEEEEBCCCCCSSCSCBCCTTSTTTTCSSSCTTEEEECCSSCCBEEEESSCSSTTCSEEEEEECC------CEEEEE
T ss_pred CCeeEEEEECCCCcccccCcCCCCCCCcCCCCCcccEEEECCCCcceEEECCCCCCcccceEEEecccCCCCCCCCeEee
Confidence 23444444431 0 001111 12345678999872 3 344332212 122333
Q ss_pred CCCC------eEEEEEcCCC-CCEEEEEEcCC-------CCEEEEEeCCeEEEEEcCCCCCceeEEEe-e--------cC
Q 003236 711 VETQ------VCRLKLQGHK-NQVHSVCWNTS-------GEYLASVSDELVRVWSIGSGSKGECIHEL-S--------CT 767 (837)
Q Consensus 711 l~s~------~~~~~l~~h~-~~V~sl~~spd-------g~~LasgsDg~I~IwDl~s~~~~~~i~~~-~--------~~ 767 (837)
+..+ .++..+..|. ..+..+.|-.. +.+|+..-.+.|....+...........+ . ..
T Consensus 255 i~~G~~yG~~~P~~~~~~~~g~Ap~G~~~Y~G~~fP~~~g~~f~~~~~g~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 334 (463)
T 2wg3_C 255 IIKGKDYESEPSLLEFKPFSNGPLVGGFVYRGCQSERLYGSYVFGDRNGNFLTLQQSPVTKQWQEKPLCLGTSGSCRGYF 334 (463)
T ss_dssp EC----CCSCCCCEECCC----CEEEEEECCCSSCTTTTTCEEEEETTSCEEEEEC-----CCEEEEECEEETTSSCSCC
T ss_pred eccCCCCCCCCCeEEeeCCCCccccceEEEeCCCChhhcceEEEecCCCcEEEEEeCCCCceeeEEEeecCCcccccccc
Confidence 3222 2334443221 46778877532 34555443666655555433211111111 1 12
Q ss_pred CCceEEEEEeCCCCEEEEEE
Q 003236 768 GNKFHSCVFHPTFPSLLVIG 787 (837)
Q Consensus 768 ~~~I~sv~fspdg~~L~sgs 787 (837)
...+..+.+.|||..+++..
T Consensus 335 ~~r~~~v~~~pdG~Lyv~~~ 354 (463)
T 2wg3_C 335 SGHILGFGEDELGEVYILSS 354 (463)
T ss_dssp CSEEEEEEECTTCCEEEEEE
T ss_pred cCcceEEEECCCCCEEEEec
Confidence 35789999999998666655
|
| >4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi} | Back alignment and structure |
|---|
Probab=95.34 E-value=1.5 Score=52.10 Aligned_cols=235 Identities=9% Similarity=0.006 Sum_probs=122.5
Q ss_pred EcCCCCEEEEEE-----CCCcEEEEeCCCCeEEE-Eec-cCCC------CeEEEEEcCCCCEEEEEe-----------CC
Q 003236 563 FSPDGKLLATGG-----HDKKAVLWCTESFTVKS-TLE-EHTQ------WITDVRFSPSLSRLATSS-----------AD 618 (837)
Q Consensus 563 fSpdg~~Lasgs-----~Dg~I~VWd~~t~~~~~-~l~-~h~~------~I~~l~fspdg~~Latgs-----------~D 618 (837)
++||+++++.+- .-..|+++|+.+++.+. .+. .-+. ....++|..++ .++.+. ..
T Consensus 137 ~~~~~~~~~~~ls~~G~d~~~~~~~d~~t~~~~~~~~~~~~k~~~~~~~~~~~~~W~d~~-~~~~~~~~~~~~~~~~~~~ 215 (711)
T 4hvt_A 137 CFQNPNRYLISMSFGGKDEMFFREWDLEKKDFVKNGFEPITNSGKLLEGKFTYPTWINKD-TIIFNLVLHKNEITSSLYP 215 (711)
T ss_dssp CSSSTTEEEEEEEETTCSEEEEEEEETTTTEECTTCSCCBCTTCCBCCEETCCEEEEETT-EEEECCCCSTTCBCTTSSB
T ss_pred cCCCCCEEEEEeCCCCCceeEEEEEECCcCCcCCCCcccccccccccccccceeeEECCC-EEEEEeCCCCCCcCcCCCC
Confidence 789998877652 22379999999988773 122 0000 11344776443 444432 23
Q ss_pred CeEEEEEcCCCCc-eeEEeeccccce-EEEEEcCCCCe----EEEEEeC---CCcEEEEECCC--CeeeeEEecCCCeeE
Q 003236 619 RTVRVWDTENPDY-SLRTFTGHSTTV-MSLDFHPSKED----LLCSCDN---NSEIRYWSINN--GSCAGVFKCQSGATQ 687 (837)
Q Consensus 619 g~I~IWDl~~~~~-~~~~~~~h~~~V-~sl~fspdg~~----llasgs~---Dg~I~vwDl~t--~~~i~~~~~~~~i~s 687 (837)
..|+.|.+-+... ....+.+....+ .+...++++.. ++++.+. ...+++.|... ++. ..+.......
T Consensus 216 ~~v~~~~~Gt~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~- 293 (711)
T 4hvt_A 216 NSLYIWKRGESIEKAKKLFEVPKEYIYVSAGKLLSDTISSSLIFISANKDFYNYDNYILDTKYKNLKL-QKINMPSDAT- 293 (711)
T ss_dssp CEEEEEETTSCGGGCEEEEECCTTSCEEEEEESSCTTTCSSEEEEEEESSSSCEEEEEEECSSSSCEE-EECCSCTTCE-
T ss_pred CEEEEEECCCChHHCeEEeccCCCceEEEEEEecCCCceEEEEEEEEecccCceeEEEEcCCCCCCcc-eEeecCCcce-
Confidence 5789998876532 233444433333 34555666653 4555432 24567777653 332 2222222222
Q ss_pred EEEecCCCEEEEE----------EcCCeEEEEECCCCe-------EEEE-Ec-CCCCCEEEEEEcCCCCEEEEEe-CC--
Q 003236 688 MRFQPRLGRILAA----------AIENYISILDVETQV-------CRLK-LQ-GHKNQVHSVCWNTSGEYLASVS-DE-- 745 (837)
Q Consensus 688 l~~sp~g~~llag----------s~dg~I~iwDl~s~~-------~~~~-l~-~h~~~V~sl~~spdg~~Lasgs-Dg-- 745 (837)
+..+.++..++.. ...+.|.++|+.+.. .... +. .....+..+.|..+ .++++.. ++
T Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~l~~~~~~~~~~ 372 (711)
T 4hvt_A 294 LQGSFKEYVFWLLRSDWKFKSHNIKAGSLVALHFTDLLKTESDKTSLKILFTPTANEVFNFISTTKD-RVFLATYDNVVA 372 (711)
T ss_dssp EEEEETTEEEEECSSCEEETTEEECTTCEEEEEGGGGGSCGGGCTTCEEEECCCTTEEEEEEEECSS-CEEEEEEETTEE
T ss_pred EeeeECCEEEEEECcccccccccCCCCeEEEEECCcccccccccccceEEECCCCCCeEEEEEEECC-EEEEEEEECCEE
Confidence 2334444443322 235679999987631 1122 32 23346778888876 4455444 66
Q ss_pred eEEEEEcCCCC-CceeEEEeecCCCceEEEEEeCCCCEEEEE-EcC---CeEEEEECCCCcEE
Q 003236 746 LVRVWSIGSGS-KGECIHELSCTGNKFHSCVFHPTFPSLLVI-GCY---ETLELWNMTENKTL 803 (837)
Q Consensus 746 ~I~IwDl~s~~-~~~~i~~~~~~~~~I~sv~fspdg~~L~sg-s~d---g~I~IwDl~s~~~~ 803 (837)
.|.++|+.++. ....+..+.. ...+..+.+++++..+++. ++. ..++.+|+. ++..
T Consensus 373 ~l~~~~~~~g~~~~~~~i~lp~-~~~~~~~~~~~~~~~~~~~~ss~~~P~~~~~~d~~-~~~~ 433 (711)
T 4hvt_A 373 KVVTFTLENEQWTKPVVLKLPY-QNAIFGMSSYEEEEEALITIENSIVPPTIYLWVKT-HELK 433 (711)
T ss_dssp EEEEECEETTEECCCEEECCCS-TTCEEEEECCTTCSCEEEEEECSSSCCEEEEECTT-SCEE
T ss_pred EEEEEECCCCceEEEeccCCCC-CeEEEEEeecCcCCEEEEEEecCCCCCEEEEEeCC-CcEE
Confidence 57777776552 1111111221 2456666667776554443 332 378888887 5443
|
| >3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha} | Back alignment and structure |
|---|
Probab=95.27 E-value=4.2 Score=44.15 Aligned_cols=257 Identities=9% Similarity=-0.010 Sum_probs=121.6
Q ss_pred CEEEEEECCCcEEEEeCCC----CeEEEEeccCCCCeEEEEEcC-CCCEEEEEeCCC----eEEEEEcCCCCceeEEee-
Q 003236 568 KLLATGGHDKKAVLWCTES----FTVKSTLEEHTQWITDVRFSP-SLSRLATSSADR----TVRVWDTENPDYSLRTFT- 637 (837)
Q Consensus 568 ~~Lasgs~Dg~I~VWd~~t----~~~~~~l~~h~~~I~~l~fsp-dg~~Latgs~Dg----~I~IWDl~~~~~~~~~~~- 637 (837)
..|.+|+..| +.+++... ....... .....|.+|++.| +...|+++...| .|... .++......+.
T Consensus 23 g~l~vgt~~G-l~~~~~~~~g~~W~~~~~~-~~~~~v~~i~~dp~~~~~l~~g~~~g~~g~gl~~s--~D~G~tW~~~~~ 98 (394)
T 3b7f_A 23 VMLLVATIKG-AWFLASDPARRTWELRGPV-FLGHTIHHIVQDPREPERMLMAARTGHLGPTVFRS--DDGGGNWTEATR 98 (394)
T ss_dssp CEEEEEETTE-EEEEEECTTSCSEEEEEEE-STTSEEEEEEECSSSTTCEEEEEEC--CCEEEEEE--SSTTSCCEECSB
T ss_pred CEEEEEecCc-eEEEECCCCCCCceECCcc-CCCCceEEEEECCCCCCeEEEEecCCCCCccEEEe--CCCCCCceECCc
Confidence 3667777766 55555332 2222111 2245699999998 334455555444 34333 22221111111
Q ss_pred -----c--------cccceEEEEEcCC--CCeEEEEEeCCCcEEEEECCCCeeeeEEe--------------------cC
Q 003236 638 -----G--------HSTTVMSLDFHPS--KEDLLCSCDNNSEIRYWSINNGSCAGVFK--------------------CQ 682 (837)
Q Consensus 638 -----~--------h~~~V~sl~fspd--g~~llasgs~Dg~I~vwDl~t~~~i~~~~--------------------~~ 682 (837)
. ....|.+|++.|. ...++ .+...+.|...+-. ++.-..+. ..
T Consensus 99 ~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~l~-~g~~~ggl~~S~Dg-G~tW~~~~~~~~~p~~~~~~~~~~~g~~~~ 176 (394)
T 3b7f_A 99 PPAFNKAPEGETGRVVDHVFWLTPGHASEPGTWY-AGTSPQGLFRSTDH-GASWEPVAGFNDHPMRRAWTGGEQDGTPDG 176 (394)
T ss_dssp CCCCCCCC----CCCCCEEEEEEECCTTSTTCEE-EEEETTEEEEESST-TSBCEECHHHHTCTTHHHHHCCC----CCC
T ss_pred cccCCCcccccccccccceeEEEeCCCCCCCEEE-EEecCCcEEEEcCC-CCCeEECcCccCCccccccccccccCCCCC
Confidence 0 1125778999873 34444 44445555544322 22211111 11
Q ss_pred CCeeEEEEecC-CCEEEEEEcCCeEEEEECCCCeEEEEEcC-----C--------CCCEEEEEEcCC-CCEEEEEeCCeE
Q 003236 683 SGATQMRFQPR-LGRILAAAIENYISILDVETQVCRLKLQG-----H--------KNQVHSVCWNTS-GEYLASVSDELV 747 (837)
Q Consensus 683 ~~i~sl~~sp~-g~~llags~dg~I~iwDl~s~~~~~~l~~-----h--------~~~V~sl~~spd-g~~LasgsDg~I 747 (837)
..+.++.+.|. .+.++++..++.|...+-. ++.-..+.. + ...+.+|.++|+ ...|+++.++.|
T Consensus 177 ~~i~~i~~d~~~~~~l~vg~~~ggl~~s~Dg-G~tW~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~~~gl 255 (394)
T 3b7f_A 177 PKMHSILVDPRDPKHLYIGMSSGGVFESTDA-GTDWKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQNHCGI 255 (394)
T ss_dssp CEEEEEEECTTCTTCEEEEEETBEEEEESST-TSSCEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEETTEE
T ss_pred CceeEEEECCCCCCEEEEEECCCCEEEECCC-CCCceECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEcCCeE
Confidence 24678888874 4566777666655544322 211111110 0 124889999986 356666665555
Q ss_pred EEEEcCCCCCceeEEEeec--CC---CceEEEEEeCC-CCEEEEEEc-----------CCeEEEEECCC-CcEE-Eec--
Q 003236 748 RVWSIGSGSKGECIHELSC--TG---NKFHSCVFHPT-FPSLLVIGC-----------YETLELWNMTE-NKTL-TLS-- 806 (837)
Q Consensus 748 ~IwDl~s~~~~~~i~~~~~--~~---~~I~sv~fspd-g~~L~sgs~-----------dg~I~IwDl~s-~~~~-~l~-- 806 (837)
...+-. + .....+.. .. ..+..++++|. ...|+++.. ++...||...+ ++.. .+.
T Consensus 256 ~~s~D~-G---~tW~~~~~~l~~~~~~~~~~i~~~p~~~~~l~~~t~~~~~~w~~~~~~~~~~~~~S~DgG~tW~~~~~g 331 (394)
T 3b7f_A 256 YRMDRR-E---GVWKRIGDAMPREVGDIGFPIVVHQRDPRTVWVFPMDGSDVWPRVSPGGKPAVYVTRDAGESWQRQDRG 331 (394)
T ss_dssp EEEETT-T---TEEECGGGGSCTTTCSCEEEEEECSSCTTCEEEEECBCCSSTTCCBCCSSCCEEEESSTTSCCEEECBT
T ss_pred EEeCCC-C---CcceECCCCCCCCCccceEEEEECCCCCCEEEEEeccCCccceeecCCCceeEEEECCCCCCceECCCC
Confidence 554422 2 11222211 11 33567788763 344555542 23344554433 3322 221
Q ss_pred -cCCC-----CeeEEEEeCCC-CEEEEEECCCcEEE
Q 003236 807 -AHDK-----LVSSLAASTVN-GMVASASHDKCVKI 835 (837)
Q Consensus 807 -~h~~-----~V~sla~spdg-~~LaSgs~DG~I~I 835 (837)
.... ....++++|.. ..|+.++.++.|.+
T Consensus 332 lp~~~~~~~~~~~~~~~~p~~~~~l~~g~~~g~l~~ 367 (394)
T 3b7f_A 332 LPTDQAWLTVKRQAMTADAHAPVGVYFGTTGGEIWA 367 (394)
T ss_dssp SCCSSCCCCCCTBSEEECCSSSCCEEEECTTSCEEE
T ss_pred CCCccccceEEEEEEEECCCCCCEEEEEeCCCeEEE
Confidence 1110 12457887743 44666666665543
|
| >3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=95.19 E-value=3.3 Score=44.28 Aligned_cols=261 Identities=8% Similarity=0.014 Sum_probs=139.8
Q ss_pred CEEEEEECCCcEEEEeCCCC-------eEE--EEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEc---CCCC-----
Q 003236 568 KLLATGGHDKKAVLWCTESF-------TVK--STLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDT---ENPD----- 630 (837)
Q Consensus 568 ~~Lasgs~Dg~I~VWd~~t~-------~~~--~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl---~~~~----- 630 (837)
..+++.+.+|.|+--.+.+. +-+ ..++ ..+.+..+........|+.-+..|.++-..+ ....
T Consensus 4 ~v~v~ls~~GyiKr~~~~~y~~~~rgg~g~~~~~~k-e~D~~~~~~~~~t~d~ll~fT~~Gr~y~~~~~~lp~~~r~~~G 82 (327)
T 3uc1_A 4 DVVVTITETGYAKRTKTDLYRSQKRGGKGVQGAGLK-QDDIVAHFFVCSTHDLILFFTTQGRVYRAKAYDLPEASRTARG 82 (327)
T ss_dssp EEEEEEETTSEEEEEEHHHHHHHC--------CCCC-GGGCEEEEEEEETTSEEEEEETTSEEEEEEGGGSCBCCSSSCC
T ss_pred cEEEEEeCCCEEEEeeHHHhhhcccCCCCccccccC-CCCEEEEEEEeCCCCEEEEEeCCCeEEEEEHHHCcCCCccCCC
Confidence 46777788888876653321 111 1222 3345665555555667777777887765553 2211
Q ss_pred ceeE---EeeccccceEEEEEcCC--CCeEEEEEeCCCcEEEEECCCC-------eeeeEEecCCCeeEEEEecCCCEEE
Q 003236 631 YSLR---TFTGHSTTVMSLDFHPS--KEDLLCSCDNNSEIRYWSINNG-------SCAGVFKCQSGATQMRFQPRLGRIL 698 (837)
Q Consensus 631 ~~~~---~~~~h~~~V~sl~fspd--g~~llasgs~Dg~I~vwDl~t~-------~~i~~~~~~~~i~sl~~sp~g~~ll 698 (837)
.++. .+. ....|.++...++ ...+++..+.+|.|+...+... .....+.....+..+........++
T Consensus 83 ~~i~~~l~l~-~~e~i~~~~~~~~~~~e~~~v~~T~~G~iKr~~l~~~~~~~r~G~~~i~lke~D~lv~~~~~~~~d~il 161 (327)
T 3uc1_A 83 QHVANLLAFQ-PEERIAQVIQIRGYTDAPYLVLATRNGLVKKSKLTDFDSNRSGGIVAVNLRDNDELVGAVLCSAGDDLL 161 (327)
T ss_dssp EEHHHHTTCC-TTCCEEEEEEESSTTSSSEEEEEETTSEEEEEEGGGGCCCCSSCEESCBCCTTCCEEEEEEECTTCEEE
T ss_pred EEHHHccCCC-CCCEEEEEEEeccCCCCCEEEEEcCCCEEEEeEHHHhhccccCceEEEEECCCCEEEEEEEecCCCEEE
Confidence 1111 111 2344555543332 2446668888999999887542 2222333455666666666678899
Q ss_pred EEEcCCeEEEEECC--C---------CeEEEEEcCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCc----eeEE
Q 003236 699 AAAIENYISILDVE--T---------QVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKG----ECIH 762 (837)
Q Consensus 699 ags~dg~I~iwDl~--s---------~~~~~~l~~h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~----~~i~ 762 (837)
..+..|.+..+... . |.....+. ....|.++...+++.+|+..+ .|.++.-.+..-... .-+.
T Consensus 162 l~T~~G~~~rf~~~~~eip~~gr~a~Gv~~i~L~-~~d~Vv~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~R~~~G~~ 240 (327)
T 3uc1_A 162 LVSANGQSIRFSATDEALRPMGRATSGVQGMRFN-IDDRLLSLNVVREGTYLLVATSGGYAKRTAIEEYPVQGRGGKGVL 240 (327)
T ss_dssp EEETTSEEEEEECCTTTSCCCCTTSBCEESSCCC-TTCCEEEEEECCTTCEEEEEETTSEEEEEEGGGSCBCCTTSCCEE
T ss_pred EEECCCeEEEEECcccccCcCCcCCCCeeeecCC-CCCEEEEEEEECCCCEEEEEeCCCcEEEEEHHHccccCcCCCcEE
Confidence 99999999888776 2 22222222 345677776666666666666 888888886532110 1122
Q ss_pred --EeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE-------Ee--ccCCCCeeEEEEeCC-CCEEEEEECC
Q 003236 763 --ELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-------TL--SAHDKLVSSLAASTV-NGMVASASHD 830 (837)
Q Consensus 763 --~~~~~~~~I~sv~fspdg~~L~sgs~dg~I~IwDl~s~~~~-------~l--~~h~~~V~sla~spd-g~~LaSgs~D 830 (837)
.+......+..+....+...++..+.+|.+..++...-... .. ......|.+++..+. ...+.+.+.+
T Consensus 241 ~~~l~~~~d~lv~~~~~~~~~~i~l~T~~G~~ir~~~~~i~~~gR~a~GV~~i~l~~~d~vv~~~~~~~~~~~~~~~~~~ 320 (327)
T 3uc1_A 241 TVMYDRRRGRLVGALIVDDDSELYAVTSGGGVIRTAARQVRKAGRQTKGVRLMNLGEGDTLLAIARNAEESGDDNAVDAN 320 (327)
T ss_dssp SSCCCTTTCSEEEEEEECTTCEEEEEEGGGCEEEEEGGGSCBCCTTSCCEECTTCCTTCCEEEEEECC------------
T ss_pred EEEecCCCCeEEEEEEeCCCccEEEEcCCCeEEEEehhhccccCCCCCCeEeEecCCCCEEEEEEEcCCCcceEEEEecC
Confidence 22222345555555556667888899988877776442221 11 123455666665543 3445555555
Q ss_pred C
Q 003236 831 K 831 (837)
Q Consensus 831 G 831 (837)
|
T Consensus 321 g 321 (327)
T 3uc1_A 321 G 321 (327)
T ss_dssp -
T ss_pred C
Confidence 4
|
| >2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A | Back alignment and structure |
|---|
Probab=95.14 E-value=5.5 Score=44.72 Aligned_cols=229 Identities=14% Similarity=0.074 Sum_probs=117.6
Q ss_pred CCeEEEEEcCCCC-EEEEEeCCCeEEEEEcCCCC--ceeEEee---------ccccceEEEEEcCC---CCeEEEEEeC-
Q 003236 598 QWITDVRFSPSLS-RLATSSADRTVRVWDTENPD--YSLRTFT---------GHSTTVMSLDFHPS---KEDLLCSCDN- 661 (837)
Q Consensus 598 ~~I~~l~fspdg~-~Latgs~Dg~I~IWDl~~~~--~~~~~~~---------~h~~~V~sl~fspd---g~~llasgs~- 661 (837)
...+.|+|.|++. .|+++...|.|++++..... ..+..+. ........|+|+|+ +..++++-+.
T Consensus 14 ~~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt~~ 93 (463)
T 2wg3_C 14 RQPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYTTN 93 (463)
T ss_dssp SSEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEEEEC
T ss_pred CCceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEEeCC
Confidence 4568999999986 56666789999999754321 1111111 11356789999996 2334444322
Q ss_pred -C----------CcEEEEECCC----------CeeeeEEec---CCCeeEEEEecCCCEEEEEEcCC-------------
Q 003236 662 -N----------SEIRYWSINN----------GSCAGVFKC---QSGATQMRFQPRLGRILAAAIEN------------- 704 (837)
Q Consensus 662 -D----------g~I~vwDl~t----------~~~i~~~~~---~~~i~sl~~sp~g~~llags~dg------------- 704 (837)
+ ..|.-|.+.. .+.+..+.. ......|.|.||+..+++.+..+
T Consensus 94 ~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG~LYv~~Gd~~~~~~~~~~~q~~~ 173 (463)
T 2wg3_C 94 QERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDGFLYIILGDGMITLDDMEEMDGLS 173 (463)
T ss_dssp CCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTTSCEEEEECCTTCCHHHHHHCTTCC
T ss_pred CCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCCCcEEEEeCCCCCCCCccccccCcC
Confidence 1 1455566542 122333321 23467899999987766655432
Q ss_pred ----eEEEEECCCC---------------------eEEEEEcCCCCCEEEEEEcCC-----CCEEEEEeC--C----eEE
Q 003236 705 ----YISILDVETQ---------------------VCRLKLQGHKNQVHSVCWNTS-----GEYLASVSD--E----LVR 748 (837)
Q Consensus 705 ----~I~iwDl~s~---------------------~~~~~l~~h~~~V~sl~~spd-----g~~LasgsD--g----~I~ 748 (837)
.|.-+|.... ..+.. .+|.+ ...++|+|. |.+.+.++| + .-.
T Consensus 174 ~~~GkIlRi~~dg~~~~~~y~iP~dNPf~~~~~~~~eI~a-~G~RN-p~gla~dp~tg~~~G~l~~~~~D~~G~~~~~~e 251 (463)
T 2wg3_C 174 DFTGSVLRLDVDTDMCNVPYSIPRSNPHFNSTNQPPEVFA-HGLHD-PGRCAVDRHPTDININLTILCSDSNGKNRSSAR 251 (463)
T ss_dssp SCTTEEEEEBCCCCCSSCSCBCCTTSTTTTCSSSCTTEEE-ECCSS-CCBEEEESSCSSTTCSEEEEEECC------CEE
T ss_pred CCCeeEEEEECCCCcccccCcCCCCCCCcCCCCCcccEEE-ECCCC-cceEEECCCCCCcccceEEEecccCCCCCCCCe
Confidence 3444444431 01111 12332 346899986 443332332 2 233
Q ss_pred EEEcCCCCC---ceeEEEeecC-CCceEEEEEeCCC------CEEEEEEcCCeEEEEECCCCcE----EEec--------
Q 003236 749 VWSIGSGSK---GECIHELSCT-GNKFHSCVFHPTF------PSLLVIGCYETLELWNMTENKT----LTLS-------- 806 (837)
Q Consensus 749 IwDl~s~~~---~~~i~~~~~~-~~~I~sv~fspdg------~~L~sgs~dg~I~IwDl~s~~~----~~l~-------- 806 (837)
|..+..+.. ...+..+..+ ...+..+.|-... ..++++...+.|....++.... ..+.
T Consensus 252 i~~i~~G~~yG~~~P~~~~~~~~g~Ap~G~~~Y~G~~fP~~~g~~f~~~~~g~i~~~~~~~~~~~~~~~~~~~g~~~~~~ 331 (463)
T 2wg3_C 252 ILQIIKGKDYESEPSLLEFKPFSNGPLVGGFVYRGCQSERLYGSYVFGDRNGNFLTLQQSPVTKQWQEKPLCLGTSGSCR 331 (463)
T ss_dssp EEEEC----CCSCCCCEECCC----CEEEEEECCCSSCTTTTTCEEEEETTSCEEEEEC-----CCEEEEECEEETTSSC
T ss_pred EeeeccCCCCCCCCCeEEeeCCCCccccceEEEeCCCChhhcceEEEecCCCcEEEEEeCCCCceeeEEEeecCCccccc
Confidence 444433221 1233333322 1456677774332 1255566567777666654321 1221
Q ss_pred -cCCCCeeEEEEeCCCCEEEEEE
Q 003236 807 -AHDKLVSSLAASTVNGMVASAS 828 (837)
Q Consensus 807 -~h~~~V~sla~spdg~~LaSgs 828 (837)
.....+..+.+.|||.++++..
T Consensus 332 ~~~~~r~~~v~~~pdG~Lyv~~~ 354 (463)
T 2wg3_C 332 GYFSGHILGFGEDELGEVYILSS 354 (463)
T ss_dssp SCCCSEEEEEEECTTCCEEEEEE
T ss_pred ccccCcceEEEECCCCCEEEEec
Confidence 1235789999999999888775
|
| >3iot_A Maltose-binding protein, huntingtin fusion protei; HTT-EX1, HD, sugar transport, transport, apoptos disease mutation, nucleus; 3.50A {Escherichia coli k-12} PDB: 3io6_A 3io4_A 3ior_A 3iou_A 3iov_A 3iow_A | Back alignment and structure |
|---|
Probab=94.47 E-value=0.011 Score=66.63 Aligned_cols=8 Identities=38% Similarity=0.733 Sum_probs=3.2
Q ss_pred HHHHHHHH
Q 003236 57 SVFWDIFI 64 (837)
Q Consensus 57 ~~fwd~f~ 64 (837)
.-+|+++.
T Consensus 337 ~~~~~~~~ 344 (449)
T 3iot_A 337 SAFWYAVR 344 (449)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 33444433
|
| >2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* | Back alignment and structure |
|---|
Probab=94.34 E-value=0.44 Score=56.70 Aligned_cols=151 Identities=11% Similarity=0.126 Sum_probs=84.9
Q ss_pred CCCEEEEEECC------CcEEEEeCCCCeEEEE--eccCCCCeEEEEEcCCCCEEEEEeCCC--eEEEEEcCCCCceeEE
Q 003236 566 DGKLLATGGHD------KKAVLWCTESFTVKST--LEEHTQWITDVRFSPSLSRLATSSADR--TVRVWDTENPDYSLRT 635 (837)
Q Consensus 566 dg~~Lasgs~D------g~I~VWd~~t~~~~~~--l~~h~~~I~~l~fspdg~~Latgs~Dg--~I~IWDl~~~~~~~~~ 635 (837)
++++++.|+.+ ..+.+||..+.+-... +...... .+++...++++++.|+.++ .+.+||+.+.......
T Consensus 451 ~~~lyv~GG~~~~~~~~~dv~~yd~~t~~W~~~~~~p~~R~~-h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~ 529 (695)
T 2zwa_A 451 NNQLLLIGGRKAPHQGLSDNWIFDMKTREWSMIKSLSHTRFR-HSACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKDVT 529 (695)
T ss_dssp TTEEEEECCBSSTTCBCCCCEEEETTTTEEEECCCCSBCCBS-CEEEECTTSCEEEECCBCSSCSEEEEETTTTEEEECC
T ss_pred CCEEEEEcCCCCCCCccccEEEEeCCCCcEEECCCCCCCccc-ceEEEEcCCEEEEECCCCCCCCEEEEECCCCceEEcc
Confidence 77788888754 3578899887544322 2111111 2233324788888887755 6899999876543222
Q ss_pred e----eccccceEEEEEcCCCCeEEEEEeC--C-----CcEEEEECCCCe------eeeEEe--cCCC-eeEEEEecCCC
Q 003236 636 F----TGHSTTVMSLDFHPSKEDLLCSCDN--N-----SEIRYWSINNGS------CAGVFK--CQSG-ATQMRFQPRLG 695 (837)
Q Consensus 636 ~----~~h~~~V~sl~fspdg~~llasgs~--D-----g~I~vwDl~t~~------~i~~~~--~~~~-i~sl~~sp~g~ 695 (837)
. ........++.+..+.+.+++.|+. + ..+.+||+.+.. -..... .... -.+++...++.
T Consensus 530 ~~g~~p~~r~~~~a~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~~~~~~~~~ 609 (695)
T 2zwa_A 530 PKDEFFQNSLVSAGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQIKYITPRK 609 (695)
T ss_dssp CSSGGGGSCCBSCEEEEETTTTEEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSCEEEEEETTE
T ss_pred CCCCCCCcccceeEEEEeCCCCEEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccceEEEeCCCE
Confidence 1 1111222335555553556767765 2 468999998876 222211 1111 22333333356
Q ss_pred EEEEEEc--------CCeEEEEECCCCeEE
Q 003236 696 RILAAAI--------ENYISILDVETQVCR 717 (837)
Q Consensus 696 ~llags~--------dg~I~iwDl~s~~~~ 717 (837)
.++.|+. ...|.+||+.+.+-.
T Consensus 610 iyv~GG~~~~~~~~~~~~v~~yd~~t~~W~ 639 (695)
T 2zwa_A 610 LLIVGGTSPSGLFDRTNSIISLDPLSETLT 639 (695)
T ss_dssp EEEECCBCSSCCCCTTTSEEEEETTTTEEE
T ss_pred EEEECCccCCCCCCCCCeEEEEECCCCeEE
Confidence 6667764 346999999887543
|
| >3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A* | Back alignment and structure |
|---|
Probab=94.13 E-value=8 Score=42.13 Aligned_cols=165 Identities=10% Similarity=0.096 Sum_probs=99.2
Q ss_pred cEEEEECCCC--eeeeEEecC-------CCeeEEEEe---cC----CCEEEEEEc-CCeEEEEECCCCeEEEEEcC----
Q 003236 664 EIRYWSINNG--SCAGVFKCQ-------SGATQMRFQ---PR----LGRILAAAI-ENYISILDVETQVCRLKLQG---- 722 (837)
Q Consensus 664 ~I~vwDl~t~--~~i~~~~~~-------~~i~sl~~s---p~----g~~llags~-dg~I~iwDl~s~~~~~~l~~---- 722 (837)
.|.+||++++ +.++.+..+ +.+..+++. +. +.+++.+.. .+.|.|||+.+++..+.+..
T Consensus 124 kLv~~DL~t~~~~li~~y~~p~~~~~~~S~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~~~~swRv~~~~~~p 203 (381)
T 3q6k_A 124 AIVAYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHKKQDSWNVTHPTFKA 203 (381)
T ss_dssp EEEEEESSSTTCCEEEEEECCGGGCCCGGGEEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETTTTEEEEEECGGGSC
T ss_pred eEEEEECCCCCceeEEEEECCHHhcccCCccceEEEecccCCCCCCccEEEEEcCCCCcEEEEECCCCcEEEEccCCCcc
Confidence 5778888888 888877653 236677777 22 345555553 57899999999876655421
Q ss_pred C--------------CCCEEEEEEcCC----CCEEEEEeCCeEEEEEcC-----CCCCceeEEEeecCC--CceEEEEEe
Q 003236 723 H--------------KNQVHSVCWNTS----GEYLASVSDELVRVWSIG-----SGSKGECIHELSCTG--NKFHSCVFH 777 (837)
Q Consensus 723 h--------------~~~V~sl~~spd----g~~LasgsDg~I~IwDl~-----s~~~~~~i~~~~~~~--~~I~sv~fs 777 (837)
. ...|..|+++|+ ++.|+...=..-++|.+. .......+..+-..+ ..-...+++
T Consensus 204 d~~~~~~i~G~~~~~~~Gi~gIaLsp~~~~~~~~LYf~plss~~ly~V~T~~L~~~~~~~~v~~~G~kg~~s~~~~~~~D 283 (381)
T 3q6k_A 204 ERPTKFDYGGKEYEFKAGIFGITLGDRDSEGNRPAYYLAGSAIKVYSVNTKELKQKGGKLNPELLGNRGKYNDAIALAYD 283 (381)
T ss_dssp CSCEEEEETTEEEEECCCEEEEEECCCCTTSCCEEEEEESSCSEEEEEEHHHHSSTTCCCCCEEEEECCTTCCEEEEEEC
T ss_pred ccCcceEECCEEeEeccCceEEEecCCcCCCCeEEEEEECCCCcEEEEEHHHhhCcchhhceEEeeecCCCCCcceEEEe
Confidence 0 236788999998 778877762223444443 222122233332222 344456776
Q ss_pred -CCCCEEEEEEcCCeEEEEECCC-C----cEEEe--ccCCCCeeEEEEeCCCCEEEEEE
Q 003236 778 -PTFPSLLVIGCYETLELWNMTE-N----KTLTL--SAHDKLVSSLAASTVNGMVASAS 828 (837)
Q Consensus 778 -pdg~~L~sgs~dg~I~IwDl~s-~----~~~~l--~~h~~~V~sla~spdg~~LaSgs 828 (837)
.+|..+++--..+.|..|+..+ . ....+ ...-..+..+.+..++.+.++++
T Consensus 284 ~~~G~ly~~~~~~~aI~~w~~~~~~~~~~n~~~l~~d~~l~~pd~~~i~~~g~Lwv~sn 342 (381)
T 3q6k_A 284 PKTKVIFFAEANTKQVSCWNTQKMPLRMKNTDVVYTSSRFVFGTDISVDSKGGLWFMSN 342 (381)
T ss_dssp TTTCEEEEEESSSSEEEEEETTSCSBCGGGEEEEEECTTCCSEEEEEECTTSCEEEEEC
T ss_pred CCCCeEEEEeccCCeEEEEeCCCCccccCceEEEEECCCccccCeEEECCCCeEEEEEC
Confidence 5565555555667999999876 1 11222 22223577888888887666654
|
| >3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B | Back alignment and structure |
|---|
Probab=93.93 E-value=1.8 Score=45.15 Aligned_cols=217 Identities=11% Similarity=0.004 Sum_probs=112.9
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeEEeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeee
Q 003236 598 QWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAG 677 (837)
Q Consensus 598 ~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~ 677 (837)
..|..|+.... ..+.-. ||.|+.|-...... +-.-......|..|+.... +.++. . ||.|+.|-....-.+.
T Consensus 24 ~~i~~ia~G~~--h~~~l~-~G~v~~wG~n~~Gq-lg~p~~~~~~i~~ia~G~~--hs~~l-~-~G~v~~wG~n~~Gqlg 95 (282)
T 3qhy_B 24 SGVDAIAGGYF--HGLALK-GGKVLGWGANLNGQ-LTMPAATQSGVDAIAAGNY--HSLAL-K-DGEVIAWGGNEDGQTT 95 (282)
T ss_dssp SSCCEEEECSS--EEEEEE-TTEEEEEECCSSST-TSCCGGGGSCCCEEEECSS--EEEEE-E-TTEEEEEECCTTSTTC
T ss_pred CCCcEEEeCCC--eEEEEE-CCEEEEEeCCCCCC-CCCCccCCCCEEEEEeCCC--EEEEE-E-CCEEEEeeCCCCCCCC
Confidence 35777776543 223335 99999998664322 1111112346777776543 33333 4 8999999875422111
Q ss_pred -EEecCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCeEEEEEcCCCC
Q 003236 678 -VFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGS 756 (837)
Q Consensus 678 -~~~~~~~i~sl~~sp~g~~llags~dg~I~iwDl~s~~~~~~l~~h~~~V~sl~~spdg~~LasgsDg~I~IwDl~s~~ 756 (837)
.......|..++... .+.++.. +|.|+.|-....-.+-.-......|..|+...+..++ .. ||.|+.|-.....
T Consensus 96 ~P~~~~~~v~~ia~G~--~hs~al~-~G~v~~wG~n~~gqlg~~~~~~~~i~~i~~G~~~~~~-l~-~G~v~~wG~n~~g 170 (282)
T 3qhy_B 96 VPAEARSGVDAIAAGA--WASYALK-DGKVIAWGDDSDGQTTVPAEAQSGVTALDGGVYTALA-VK-NGGVIAWGDNYFG 170 (282)
T ss_dssp CCGGGSSSEEEEEEET--TEEEEEE-TTEEEEEECCTTSTTSCCGGGGSSEEEEEECSSEEEE-EE-TTEEEEEECCTTS
T ss_pred CCcccCCCeEEEECcC--CEEEEEe-CCeEEEecCCCCCcCCCCccCCCCeEEEEcccCEEEE-EE-CCEEEEecCCCCC
Confidence 111234566665554 4555556 9999999765421110001123457777654433333 23 8999999765432
Q ss_pred CceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE-EeccCCCCeeEEEEeCCCCEEEEEECCCcEEE
Q 003236 757 KGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKI 835 (837)
Q Consensus 757 ~~~~i~~~~~~~~~I~sv~fspdg~~L~sgs~dg~I~IwDl~s~~~~-~l~~h~~~V~sla~spdg~~LaSgs~DG~I~I 835 (837)
... ........|..++.-.. +.++. .++.|+.|-....-.+ .-......|..|+..... .++.. ||.|+.
T Consensus 171 qlg---~p~~~~~~v~~i~~G~~--hs~al-~~G~v~~wG~n~~gqlg~p~~~~~~v~~i~~G~~h-~~al~--~g~v~~ 241 (282)
T 3qhy_B 171 QTT---VPAEAQSGVDDVAGGIF--HSLAL-KDGKVIAWGDNRYKQTTVPTEALSGVSAIASGEWY-SLALK--NGKVIA 241 (282)
T ss_dssp TTS---CCGGGGSSEEEEEECSS--EEEEE-ETTEEEEEECCTTSTTCCCGGGGSSCCEEEECSSC-EEEEE--TTEEEE
T ss_pred CCC---CceecCCCeEEEEecCC--EEEEE-ECCeEEEEECCCCCCCCCCcccCCCceEEEcCCCE-EEEEE--CCEEEE
Confidence 111 00011244665555433 33444 6889999975443222 111122457777755433 33333 888888
Q ss_pred e
Q 003236 836 W 836 (837)
Q Consensus 836 W 836 (837)
|
T Consensus 242 w 242 (282)
T 3qhy_B 242 W 242 (282)
T ss_dssp E
T ss_pred e
Confidence 8
|
| >1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1 | Back alignment and structure |
|---|
Probab=93.88 E-value=7.7 Score=41.02 Aligned_cols=230 Identities=10% Similarity=0.050 Sum_probs=128.2
Q ss_pred cCCCCEEEEEECCCcEEEEeCCCCeEE---------EEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCc---
Q 003236 564 SPDGKLLATGGHDKKAVLWCTESFTVK---------STLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDY--- 631 (837)
Q Consensus 564 Spdg~~Lasgs~Dg~I~VWd~~t~~~~---------~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~~~~--- 631 (837)
-++..++++.+.+|.|+-..+...+.. ..+.. .+.+..+........++..+..|.++-+....-..
T Consensus 5 i~~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~lke-~D~l~~~~~~~~~~~ll~~T~~G~~~~~~~~~ip~~~r 83 (312)
T 1suu_A 5 MQKENIVVMLTKKGFLKRLSQNEYKLQGTGGKGLSSFDLND-GDEIVIALCVNTHDYLFMISNEGKLYLINAYEIKDSSR 83 (312)
T ss_dssp ---CEEEEEEETTCBEEEEEGGGSCBCCSSCCCEECCCCCT-TCCEEEEEEEETTCEEEEEETTSEEEEEEGGGSCC---
T ss_pred cCCCCEEEEEeCCCEEEEeEHHHhhccccCCCCceecccCC-CCEEEEEEEECCCCEEEEEECCCeEEEEEHHHCCCCCc
Confidence 346678889999999998866543211 12232 34455555555566788888999887776542100
Q ss_pred -----e---eEEeeccccceEEEEEcC---CCCeEEEEEeCCCcEEEEECCC-------CeeeeEEecCCCeeEEEEecC
Q 003236 632 -----S---LRTFTGHSTTVMSLDFHP---SKEDLLCSCDNNSEIRYWSINN-------GSCAGVFKCQSGATQMRFQPR 693 (837)
Q Consensus 632 -----~---~~~~~~h~~~V~sl~fsp---dg~~llasgs~Dg~I~vwDl~t-------~~~i~~~~~~~~i~sl~~sp~ 693 (837)
. ...+. ....|.++...+ ++. .++..+..|.++...+.. |.....+.....+..+.....
T Consensus 84 ~~~G~~i~~~l~l~-~~e~i~~~~~~~~~~~~~-~ll~~T~~G~~kr~~l~~~~~~r~~G~~~i~L~~~d~lv~~~~~~~ 161 (312)
T 1suu_A 84 ASKGQNISELINLG-DQEEILTIKNSKDLTDDA-YLLLTTASGKIARFESTDFKAVKSRGVIVIKLNDKDFVTSAEIVFK 161 (312)
T ss_dssp ----CBGGGTSCCC-TTCCEEEEEEESCCCTTC-EEEEEETTSEEEEEEGGGGCC----CEECBCCCTTCCEEEEEEECT
T ss_pred cCCCcChhhccCCC-CCCEEEEEEEeccCCCCC-EEEEEeCCCeEEEEEHHHhhccCCCcEEEEecCCCCEEEEEEEeCC
Confidence 0 01122 223454443332 233 444667799999888743 222323333556666666666
Q ss_pred CCEEEEEEcCCeEEEEECCC---------CeEEEEEcCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCC------C
Q 003236 694 LGRILAAAIENYISILDVET---------QVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGS------K 757 (837)
Q Consensus 694 g~~llags~dg~I~iwDl~s---------~~~~~~l~~h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~------~ 757 (837)
+..++..+.+|.+..+.... |.....+.. ...|.++....++..|++.+ .|.++..++..-. .
T Consensus 162 ~~~i~l~T~~G~~~r~~~~ev~~~gR~~~Gv~~i~L~~-~d~vv~~~~v~~~~~l~~vt~~G~~kr~~~~e~~~~~R~~k 240 (312)
T 1suu_A 162 DEKVICLSKKGSAFIFNSRDVRLTNRGTQGVCGMKLKE-GDLFVKVLSVKENPYLLIVSENGYGKRLNMSKISELKRGAT 240 (312)
T ss_dssp TCEEEEEETTSEEEEEEGGGSCBCCTTBCCEECCCCCT-TCCEEEEEECTTCSEEEEEETTSEEEEEEGGGSCBCCTTCC
T ss_pred CCEEEEEeCCCcEEEEEHHHccccCCCCCCeEeEEeCC-CCEEEEEEEECCCCeEEEEECCCceEEEEHHHhcccCCCCC
Confidence 67899999999999987653 222233332 44566666555555555555 8888888875321 1
Q ss_pred ceeEEEee-cCCCceEEEEEeCCCCEEEEEEcCCeEEEEEC
Q 003236 758 GECIHELS-CTGNKFHSCVFHPTFPSLLVIGCYETLELWNM 797 (837)
Q Consensus 758 ~~~i~~~~-~~~~~I~sv~fspdg~~L~sgs~dg~I~IwDl 797 (837)
...+..+. .....+..+....+...++..+..|.+.-...
T Consensus 241 Gv~~~~~~k~~~~~lv~~~~~~~~~~l~~~t~~g~~~r~~~ 281 (312)
T 1suu_A 241 GYTSYKKSDKKAGSVVDAIAVSEDDEILLVSKRSKALRTVA 281 (312)
T ss_dssp CEECSCTTCTTTCSEEEEEEECTTCEEEEEETTCEEEEEEG
T ss_pred CEEeeEccCCCCCeEEEEEEeCCCCEEEEEeCCCeEEEEEc
Confidence 11111111 22334444433345556777777775444444
|
| >1wp5_A Topoisomerase IV; broken beta-propeller, hairpin-invaded beta-propeller, six- bladed beta-propeller; 1.79A {Geobacillus stearothermophilus} SCOP: b.68.10.1 | Back alignment and structure |
|---|
Probab=93.87 E-value=5.9 Score=42.20 Aligned_cols=233 Identities=9% Similarity=0.046 Sum_probs=129.0
Q ss_pred CCCCEEEEEECCCcEEEEeCCCCe----EEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCC---CC-----ce
Q 003236 565 PDGKLLATGGHDKKAVLWCTESFT----VKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTEN---PD-----YS 632 (837)
Q Consensus 565 pdg~~Lasgs~Dg~I~VWd~~t~~----~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~---~~-----~~ 632 (837)
|+..++++.+.+|.|+--.+...+ ....+.. .+.+..+........|+..+..|.++-+.... .. .+
T Consensus 3 ~~e~~~v~lT~~G~IKr~~~~~~~~~~~~~~~lke-~D~l~~~~~~~t~d~ll~fT~~Gr~~~~~~~elp~~~r~a~G~~ 81 (323)
T 1wp5_A 3 ASEDVIVTVTKDGYVKRTSLRSYAASNGQDFAMKD-TDRLLAMLEMNTKDVLLLFTNKGNYLYCPVHELPDIRWKDLGQH 81 (323)
T ss_dssp SCCEEEEEEETTCEEEEEEHHHHHHTTTCCCCCCT-TCCEEEEEEEETTSEEEEEETTSEEEEEEGGGSCBCCTTSCCEE
T ss_pred cCCcEEEEEeCCCEEEEeEHHHhhhcCccccccCC-CCEEEEEEEECCCCEEEEEECCCEEEEEEHHHCcCCCCCCCCcC
Confidence 566678888999999877544211 1112332 34455555555566788888888877665531 11 11
Q ss_pred eEE-e-eccccceEEEEEcCC--CCeEEEEEeCCCcEEEEECCC--------CeeeeEEecCCCeeEEEEecCCCEEEEE
Q 003236 633 LRT-F-TGHSTTVMSLDFHPS--KEDLLCSCDNNSEIRYWSINN--------GSCAGVFKCQSGATQMRFQPRLGRILAA 700 (837)
Q Consensus 633 ~~~-~-~~h~~~V~sl~fspd--g~~llasgs~Dg~I~vwDl~t--------~~~i~~~~~~~~i~sl~~sp~g~~llag 700 (837)
+.. + ......|.++...++ ....++.++.+|.++...+.. +.....+.....+..+........++..
T Consensus 82 i~~~i~L~~~e~Iv~~~~~~~~~~~~~ll~~T~~G~iKrt~l~e~~~~~r~~G~~ai~l~e~d~lv~~~~~~~~~~i~l~ 161 (323)
T 1wp5_A 82 IANIIPIDRDEEIIKAIPINDFELNGYFLFVTRNGMVKKTELKHYKAQRYSKPLTGINLKNDDQVVDVHLTDGMNELFLV 161 (323)
T ss_dssp GGGTSCCCTTCCEEEEEEESCTTSSCEEEEEETTSEEEEEEGGGGCCSCCSSCEECSCCCTTCCEEEEEEECSCSEEEEE
T ss_pred hhhccCCCCCCEEEEEEEecccCCCceEEEEeCCCeEEEeEHHHhhhccccCceEEEEeCCCCEEEEEEEeCCCCEEEEE
Confidence 111 1 112234555433332 123455778899999988742 2222233334556666666666789999
Q ss_pred EcCCeEEEEECCC---------CeEEEEEcCCCCCEEEEEEcCCCC-EEEEEe-CCeEEEEEcCCCCC----ceeEE---
Q 003236 701 AIENYISILDVET---------QVCRLKLQGHKNQVHSVCWNTSGE-YLASVS-DELVRVWSIGSGSK----GECIH--- 762 (837)
Q Consensus 701 s~dg~I~iwDl~s---------~~~~~~l~~h~~~V~sl~~spdg~-~Lasgs-Dg~I~IwDl~s~~~----~~~i~--- 762 (837)
+.+|.+..|.... |.....+. ....|.++...+++. .|++.+ .|..+..++..-.. ..-+.
T Consensus 162 T~~G~~irf~~~ev~~~gR~a~GV~~i~L~-~~d~Vv~~~~~~~~~~~ll~vt~~G~gKr~~~~e~~~~~Rg~kGv~~~~ 240 (323)
T 1wp5_A 162 THNGYALWFDESEVSIVGVRAAGVKGMNLK-EGDYIVSGQLITSKDESIVVATQRGAVKKMKLTEFEKATRAKRGVVILR 240 (323)
T ss_dssp ETTSEEEEEEGGGSCBCCSSCCCEECCCCC-TTCCEEEEEEECCTTCEEEEEETTSEEEEEEGGGSCCCCTTSCCEECSC
T ss_pred eCCCcEEEEEHHHCcccCCCCcCEEEEEeC-CCCEEEEEEEEcCCCcEEEEEECCCceEEEEHHHccccCCCCCCEECee
Confidence 9999998887643 12222232 234566665544444 455555 88888887754110 11111
Q ss_pred EeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCC
Q 003236 763 ELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTE 799 (837)
Q Consensus 763 ~~~~~~~~I~sv~fspdg~~L~sgs~dg~I~IwDl~s 799 (837)
.+...+..+..+....+...+++.+..|.+..+++..
T Consensus 241 ~~~~~~~~l~~~~~v~~~~~i~~it~~g~~ir~~~~~ 277 (323)
T 1wp5_A 241 ELKANPHRISGFVVAQDSDTIYLQTEKSFIETIKVGD 277 (323)
T ss_dssp CCSSSCCCEEEEEEECTTCEEEEEETTSCEEEEEGGG
T ss_pred ecCCCCceEEEEEEeCCCCeEEEEeCCCeEEEEEhhh
Confidence 2222333555444444456688888888777666644
|
| >3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.81 E-value=9.1 Score=41.62 Aligned_cols=229 Identities=10% Similarity=0.101 Sum_probs=115.0
Q ss_pred CeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCC--------c--eeEEeec-cccceEEEEEcCCCCeEEEEEeCCCcEEE
Q 003236 599 WITDVRFSPSLSRLATSSADRTVRVWDTENPD--------Y--SLRTFTG-HSTTVMSLDFHPSKEDLLCSCDNNSEIRY 667 (837)
Q Consensus 599 ~I~~l~fspdg~~Latgs~Dg~I~IWDl~~~~--------~--~~~~~~~-h~~~V~sl~fspdg~~llasgs~Dg~I~v 667 (837)
.|..|+-. ....+.-..||.|+.|-..... . ....+.. ....+..++++.-..+. +.-..||.|+.
T Consensus 54 ~i~~i~~G--~~~~~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~~~~v~i~~G~~h~-~al~~~G~v~~ 130 (389)
T 3kci_A 54 RPVQLIGG--EQTLFAVTADGKLYATGYGAGGRLGIGGTESVSTPTLLESIQHVFIKKVAVNSGGKHC-LALSSEGEVYS 130 (389)
T ss_dssp CEEEEEEE--TTEEEEEETTSCEEEEECCGGGTTSSSSSCCEEEEEECGGGTTSCEEEEEECTTCSEE-EEEETTSCEEE
T ss_pred ceEEEEeC--CCeEEEEcCCCcEEEEECCCCCCCCCCCcCCccCCEEcccccCCceeEEEECcCCCeE-EEEcCCCCEEE
Confidence 34455433 3455666788999999643211 0 0111111 12234445555443433 35566999999
Q ss_pred EECCCCe---------e--eeEEecCC--CeeEEEEecCCCEEEEEEcCCeEEEEECCCC-----------eEEEEEcC-
Q 003236 668 WSINNGS---------C--AGVFKCQS--GATQMRFQPRLGRILAAAIENYISILDVETQ-----------VCRLKLQG- 722 (837)
Q Consensus 668 wDl~t~~---------~--i~~~~~~~--~i~sl~~sp~g~~llags~dg~I~iwDl~s~-----------~~~~~l~~- 722 (837)
|-....- . ...+.... .|..++ ....+.++...+|.|+.|-.... .....+..
T Consensus 131 wG~n~~GqLG~g~~~~~~~p~~v~~l~~~~i~~va--~G~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~p~~v~~~ 208 (389)
T 3kci_A 131 WGEAEDGKLGHGNRSPCDRPRVIESLRGIEVVDVA--AGGAHSACVTAAGDLYTWGKGRYGRLGHSDSEDQLKPKLVEAL 208 (389)
T ss_dssp EECCGGGTTCSSSCCCEEEEEECGGGTTSCEEEEE--ECSSEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGG
T ss_pred EeCCCCCcCCCCCCccCcCCeEecccCCCeEEEEE--eCcCeEEEEeCCCeEEEeCCCCCCCcCCCCCcccccceEeccc
Confidence 9654210 1 11111112 344443 34567778888999999965320 11112221
Q ss_pred CCCCEEEEEEcCC-CCEEEEEeCCeEEEEEcCCCC------Cc-eeE-EEee-cCCCceEEEEEeCCCCEEEEEEcCCeE
Q 003236 723 HKNQVHSVCWNTS-GEYLASVSDELVRVWSIGSGS------KG-ECI-HELS-CTGNKFHSCVFHPTFPSLLVIGCYETL 792 (837)
Q Consensus 723 h~~~V~sl~~spd-g~~LasgsDg~I~IwDl~s~~------~~-~~i-~~~~-~~~~~I~sv~fspdg~~L~sgs~dg~I 792 (837)
....|..++.... ...++...|+.|+.|-..... .. ... ..+. .....|..++.- ..+.++...++.|
T Consensus 209 ~~~~v~~ia~G~g~~~t~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~v~~v~~G--~~hs~alt~~G~v 286 (389)
T 3kci_A 209 QGHRVVDIACGSGDAQTLCLTDDDTVWSWGDGDYGKLGRGGSDGCKVPMKIDSLTGLGVVKVECG--SQFSVALTKSGAV 286 (389)
T ss_dssp TTSCEEEEEECCSSCEEEEEETTTEEEEEECCGGGTTSSSSCCCEEEEEECGGGTTSCEEEEEEE--TTEEEEEETTSCE
T ss_pred CCCeEEEEEEcCCCcEEEEEccCCEEEEEeCCCCCCCCCCCCCCccccEEecccCCCcEEEEeCC--CCEEEEEeCCCeE
Confidence 2345777776542 334444459999999754311 00 111 1111 122245555543 3456667888899
Q ss_pred EEEECCCC---------c---EEEecc-CCCCeeEEEEeCCCCEEEEEECCCcEEEe
Q 003236 793 ELWNMTEN---------K---TLTLSA-HDKLVSSLAASTVNGMVASASHDKCVKIW 836 (837)
Q Consensus 793 ~IwDl~s~---------~---~~~l~~-h~~~V~sla~spdg~~LaSgs~DG~I~IW 836 (837)
+.|-.... . +..+.. ....|..|+.. ..+.+....||.|+.|
T Consensus 287 ~~wG~n~~GqLG~g~~~~~~~P~~v~~l~~~~v~~ia~G--~~h~~al~~~G~v~~w 341 (389)
T 3kci_A 287 YTWGKGDYHRLGHGSDDHVRRPRQVQGLQGKKVIAIATG--SLHCVCCTEDGEVYTW 341 (389)
T ss_dssp EEEECCGGGTTCSSSCCCEEEEEECGGGTTCCEEEEEEC--SSEEEEEETTCCEEEE
T ss_pred EEEeCCCCCCCCCCCCccccCCeEeccCCCCCEEEEEec--cCeEEEECCCCCEEEe
Confidence 99965321 1 112221 12346666543 3445555788888888
|
| >3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B | Back alignment and structure |
|---|
Probab=93.51 E-value=1.6 Score=45.69 Aligned_cols=240 Identities=13% Similarity=0.028 Sum_probs=121.5
Q ss_pred CeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeEEe
Q 003236 557 KVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTF 636 (837)
Q Consensus 557 ~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~~~~~~~~~ 636 (837)
.|..|+..... .++. . ||.|+.|-......+..-......|..|+...+.. ++. . ||.|+.|-...... +-.-
T Consensus 25 ~i~~ia~G~~h-~~~l-~-~G~v~~wG~n~~Gqlg~p~~~~~~i~~ia~G~~hs-~~l-~-~G~v~~wG~n~~Gq-lg~P 97 (282)
T 3qhy_B 25 GVDAIAGGYFH-GLAL-K-GGKVLGWGANLNGQLTMPAATQSGVDAIAAGNYHS-LAL-K-DGEVIAWGGNEDGQ-TTVP 97 (282)
T ss_dssp SCCEEEECSSE-EEEE-E-TTEEEEEECCSSSTTSCCGGGGSCCCEEEECSSEE-EEE-E-TTEEEEEECCTTST-TCCC
T ss_pred CCcEEEeCCCe-EEEE-E-CCEEEEEeCCCCCCCCCCccCCCCEEEEEeCCCEE-EEE-E-CCEEEEeeCCCCCC-CCCC
Confidence 36666655432 2333 4 88888886543211111111233577777654432 333 4 89999998664322 1111
Q ss_pred eccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCC-eeeeEEecCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCe
Q 003236 637 TGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNG-SCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQV 715 (837)
Q Consensus 637 ~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~-~~i~~~~~~~~i~sl~~sp~g~~llags~dg~I~iwDl~s~~ 715 (837)
..-...|..|+.... +.+ .-. ||.|+.|-.... .+-........|..++.-. .+.++.. +|.|+.|-....-
T Consensus 98 ~~~~~~v~~ia~G~~--hs~-al~-~G~v~~wG~n~~gqlg~~~~~~~~i~~i~~G~--~~~~~l~-~G~v~~wG~n~~g 170 (282)
T 3qhy_B 98 AEARSGVDAIAAGAW--ASY-ALK-DGKVIAWGDDSDGQTTVPAEAQSGVTALDGGV--YTALAVK-NGGVIAWGDNYFG 170 (282)
T ss_dssp GGGSSSEEEEEEETT--EEE-EEE-TTEEEEEECCTTSTTSCCGGGGSSEEEEEECS--SEEEEEE-TTEEEEEECCTTS
T ss_pred cccCCCeEEEECcCC--EEE-EEe-CCeEEEecCCCCCcCCCCccCCCCeEEEEccc--CEEEEEE-CCEEEEecCCCCC
Confidence 111246777776643 233 334 899999977542 2211111234455555433 3344444 7888888665321
Q ss_pred EEEEEcCCCCCEEEEEEcCCCCEEEEEeCCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEE
Q 003236 716 CRLKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELW 795 (837)
Q Consensus 716 ~~~~l~~h~~~V~sl~~spdg~~LasgsDg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fspdg~~L~sgs~dg~I~Iw 795 (837)
.+-.-......|..|+...+.. ++. .||.|+.|-.......- .-......|..++.... +.++.. |+.|+.|
T Consensus 171 qlg~p~~~~~~v~~i~~G~~hs-~al-~~G~v~~wG~n~~gqlg---~p~~~~~~v~~i~~G~~--h~~al~-~g~v~~w 242 (282)
T 3qhy_B 171 QTTVPAEAQSGVDDVAGGIFHS-LAL-KDGKVIAWGDNRYKQTT---VPTEALSGVSAIASGEW--YSLALK-NGKVIAW 242 (282)
T ss_dssp TTSCCGGGGSSEEEEEECSSEE-EEE-ETTEEEEEECCTTSTTC---CCGGGGSSCCEEEECSS--CEEEEE-TTEEEEE
T ss_pred CCCCceecCCCeEEEEecCCEE-EEE-ECCeEEEEECCCCCCCC---CCcccCCCceEEEcCCC--EEEEEE-CCEEEEe
Confidence 1100001134577777654433 344 69999999765432110 00011234555554433 334444 8999999
Q ss_pred ECCCCcEEEeccCCCCeeEEEEeCCC
Q 003236 796 NMTENKTLTLSAHDKLVSSLAASTVN 821 (837)
Q Consensus 796 Dl~s~~~~~l~~h~~~V~sla~spdg 821 (837)
-......+.+ ...|..|+.....
T Consensus 243 G~n~~gq~~v---~~~v~~iaaG~~h 265 (282)
T 3qhy_B 243 GSSRTAPSSV---QSGVSSIEAGPNA 265 (282)
T ss_dssp STTCCCCGGG---SSCEEEEEECSSC
T ss_pred cCCCCccccC---CCCcEEEEECcCe
Confidence 7655433322 3457777765443
|
| >4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi} | Back alignment and structure |
|---|
Probab=92.62 E-value=7.6 Score=46.10 Aligned_cols=222 Identities=10% Similarity=0.064 Sum_probs=112.8
Q ss_pred EEE-EcCCCCEEEEE-e----CCCeEEEEEcCCCCceeEEeec-ccc------ceEEEEEcCCCCeEEEEEe--------
Q 003236 602 DVR-FSPSLSRLATS-S----ADRTVRVWDTENPDYSLRTFTG-HST------TVMSLDFHPSKEDLLCSCD-------- 660 (837)
Q Consensus 602 ~l~-fspdg~~Latg-s----~Dg~I~IWDl~~~~~~~~~~~~-h~~------~V~sl~fspdg~~llasgs-------- 660 (837)
.+. ++|++++++.+ | .-..|+++|+.+++..-..+.. -.. ....++|. +++.++++..
T Consensus 133 g~~~~~~~~~~~~~~ls~~G~d~~~~~~~d~~t~~~~~~~~~~~~k~~~~~~~~~~~~~W~-d~~~~~~~~~~~~~~~~~ 211 (711)
T 4hvt_A 133 GVSNCFQNPNRYLISMSFGGKDEMFFREWDLEKKDFVKNGFEPITNSGKLLEGKFTYPTWI-NKDTIIFNLVLHKNEITS 211 (711)
T ss_dssp EEEECSSSTTEEEEEEEETTCSEEEEEEEETTTTEECTTCSCCBCTTCCBCCEETCCEEEE-ETTEEEECCCCSTTCBCT
T ss_pred ceeecCCCCCEEEEEeCCCCCceeEEEEEECCcCCcCCCCcccccccccccccccceeeEE-CCCEEEEEeCCCCCCcCc
Confidence 344 78888876654 2 2347999999987642222220 000 11344776 3355555421
Q ss_pred --CCCcEEEEECCCCe--eeeEEec--CCCeeEEEEecCCCE-----EEEEEcC---CeEEEEECCC--CeEEEEEcCCC
Q 003236 661 --NNSEIRYWSINNGS--CAGVFKC--QSGATQMRFQPRLGR-----ILAAAIE---NYISILDVET--QVCRLKLQGHK 724 (837)
Q Consensus 661 --~Dg~I~vwDl~t~~--~i~~~~~--~~~i~sl~~sp~g~~-----llags~d---g~I~iwDl~s--~~~~~~l~~h~ 724 (837)
....|+.|.+-+.. -...+.. ..-......+.++++ ++..+.+ ..+.+.|... ++ ...+....
T Consensus 212 ~~~~~~v~~~~~Gt~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~ 290 (711)
T 4hvt_A 212 SLYPNSLYIWKRGESIEKAKKLFEVPKEYIYVSAGKLLSDTISSSLIFISANKDFYNYDNYILDTKYKNLK-LQKINMPS 290 (711)
T ss_dssp TSSBCEEEEEETTSCGGGCEEEEECCTTSCEEEEEESSCTTTCSSEEEEEEESSSSCEEEEEEECSSSSCE-EEECCSCT
T ss_pred CCCCCEEEEEECCCChHHCeEEeccCCCceEEEEEEecCCCceEEEEEEEEecccCceeEEEEcCCCCCCc-ceEeecCC
Confidence 12468888887642 2233332 222334445566652 3333322 4567777653 33 22332222
Q ss_pred CCEEEEEEcCCCCEEEEE-----------eCCeEEEEEcCCCCCc----eeEEE-e-ecCCCceEEEEEeCCCCEEEEEE
Q 003236 725 NQVHSVCWNTSGEYLASV-----------SDELVRVWSIGSGSKG----ECIHE-L-SCTGNKFHSCVFHPTFPSLLVIG 787 (837)
Q Consensus 725 ~~V~sl~~spdg~~Lasg-----------sDg~I~IwDl~s~~~~----~~i~~-~-~~~~~~I~sv~fspdg~~L~sgs 787 (837)
.. .+..+.++.+++.. ..+.|.+.|+.+.... ..... + ......+..+.+..+ ..+++..
T Consensus 291 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~l~~~~~ 367 (711)
T 4hvt_A 291 DA--TLQGSFKEYVFWLLRSDWKFKSHNIKAGSLVALHFTDLLKTESDKTSLKILFTPTANEVFNFISTTKD-RVFLATY 367 (711)
T ss_dssp TC--EEEEEETTEEEEECSSCEEETTEEECTTCEEEEEGGGGGSCGGGCTTCEEEECCCTTEEEEEEEECSS-CEEEEEE
T ss_pred cc--eEeeeECCEEEEEECcccccccccCCCCeEEEEECCcccccccccccceEEECCCCCCeEEEEEEECC-EEEEEEE
Confidence 21 12334455555532 1557889998764210 11111 2 223446778888876 4556666
Q ss_pred cCC--eEEEEECCCCc--EEE-ec-cCCCCeeEEEEeCCCC-EEEEEE
Q 003236 788 CYE--TLELWNMTENK--TLT-LS-AHDKLVSSLAASTVNG-MVASAS 828 (837)
Q Consensus 788 ~dg--~I~IwDl~s~~--~~~-l~-~h~~~V~sla~spdg~-~LaSgs 828 (837)
.++ .|+++|+.++. ... +. ...+.|..+.+++++. ++++.+
T Consensus 368 ~~~~~~l~~~~~~~g~~~~~~~i~lp~~~~~~~~~~~~~~~~~~~~~s 415 (711)
T 4hvt_A 368 DNVVAKVVTFTLENEQWTKPVVLKLPYQNAIFGMSSYEEEEEALITIE 415 (711)
T ss_dssp ETTEEEEEEECEETTEECCCEEECCCSTTCEEEEECCTTCSCEEEEEE
T ss_pred ECCEEEEEEEECCCCceEEEeccCCCCCeEEEEEeecCcCCEEEEEEe
Confidence 666 67888877664 222 21 1134566666667665 444443
|
| >1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli} | Back alignment and structure |
|---|
Probab=92.57 E-value=12 Score=39.45 Aligned_cols=232 Identities=9% Similarity=0.065 Sum_probs=127.9
Q ss_pred CCCCEEEEEECCCcEEEEeCCCCeEEE---------EeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcC---CCC--
Q 003236 565 PDGKLLATGGHDKKAVLWCTESFTVKS---------TLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTE---NPD-- 630 (837)
Q Consensus 565 pdg~~Lasgs~Dg~I~VWd~~t~~~~~---------~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~---~~~-- 630 (837)
|+..++++.+.+|.|+--.+.+.+... .+.. .+.+..+........|+..+..|.++-+... ...
T Consensus 1 ~~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~~ke-~D~l~~~~~~~~~~~ll~fT~~G~~~~~~~~elp~~~~~ 79 (307)
T 1zi0_A 1 TQEDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKE-EDFIDRLLVANTHDHILCFSSRGRVYSMKVYQLPEATRG 79 (307)
T ss_dssp CCCEEEEEEETTSEEEEEECC---------------------CCEEEEEEEETTCEEEEEETTSEEEEEEGGGSCCCCSS
T ss_pred CCCcEEEEEeCCCEEEEeeHHHhhhhccCCCCceeeeeCC-CCEEEEEEEECCCCEEEEEECCCEEEEEEhhHCcCCCCC
Confidence 345678888999999877765543221 1222 2445455555556677777888887666543 111
Q ss_pred ---ceeE---EeeccccceEEEEEcC--CCCeEEEEEeCCCcEEEEECCC-------CeeeeEEecCCCeeEEEEecCCC
Q 003236 631 ---YSLR---TFTGHSTTVMSLDFHP--SKEDLLCSCDNNSEIRYWSINN-------GSCAGVFKCQSGATQMRFQPRLG 695 (837)
Q Consensus 631 ---~~~~---~~~~h~~~V~sl~fsp--dg~~llasgs~Dg~I~vwDl~t-------~~~i~~~~~~~~i~sl~~sp~g~ 695 (837)
.++. .+. ....|.++...+ +....++..+.+|.++...+.. +.....+.....+..+.......
T Consensus 80 a~G~~i~~~l~l~-~~e~i~~~~~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~r~G~~~i~l~~~d~lv~~~~~~~~~ 158 (307)
T 1zi0_A 80 ARGRPIVNLLPLE-QDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVDGDELIGVDLTSGED 158 (307)
T ss_dssp SCCEEGGGTSCCC-TTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGTTCCTTCEESSCCCTTCCEEEEEEECTTC
T ss_pred CCCeEhhhccCCC-CCCEEEEEEEeccCCCCcEEEEEeCCCeEEEEEHHHhhccccCCeEEEEECCCCEEEEEEEeCCCC
Confidence 1111 112 234455554321 1233455778899999987642 22222233345666666666667
Q ss_pred EEEEEEcCCeEEEEECCC---------CeEEEEEcCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCC------Cce
Q 003236 696 RILAAAIENYISILDVET---------QVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGS------KGE 759 (837)
Q Consensus 696 ~llags~dg~I~iwDl~s---------~~~~~~l~~h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~------~~~ 759 (837)
.++..+.+|.+..++... |.....+. ....|.++....++..|++.+ .|.++-.++..-. ...
T Consensus 159 ~i~l~T~~G~~irf~~~~v~~~gr~a~Gv~~i~L~-~~d~Vv~~~~~~~~~~ll~~T~~G~~Kr~~~~e~~~~~Rg~kG~ 237 (307)
T 1zi0_A 159 EVMLFSAEGKVVRFKESSVRAMGCNTTGVRGIRLG-EGDKVVSLIVPRGDGAILTATQNGYGKRTAVAEYPTKSRATKGV 237 (307)
T ss_dssp EEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCC-TTCCEEEEECCCSSCEEEEEETTSEEEEECGGGSCCCCTTSCCE
T ss_pred EEEEECCCCcEEEEEHHHcCccCCCCCCeEeEEeC-CCCEEEEEEEecCCCEEEEEEcCCceEEEEHHHhccCCCCCCCE
Confidence 899999999988887642 22222232 345666666555555566666 8888888774321 111
Q ss_pred eEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCC
Q 003236 760 CIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTE 799 (837)
Q Consensus 760 ~i~~~~~~~~~I~sv~fspdg~~L~sgs~dg~I~IwDl~s 799 (837)
....+......+..+....+...|+..+.+|.+.-+++..
T Consensus 238 ~~~~~~~~~~~lv~~~~v~~~~~l~~~t~~g~~ir~~~~~ 277 (307)
T 1zi0_A 238 ISIKVTERNGLVVGAVQVDDCDQIMMITDAGTLVRTRVSE 277 (307)
T ss_dssp ESSCCCTTTCSEEEEEEECTTCEEEEEESSCCEEEEEGGG
T ss_pred EeeEecCCCCeEEEEEEeCCCceEEEEcCCCcEEEEeccc
Confidence 1222333335555555544556677888888776666644
|
| >3l6v_A GYRA, DNA gyrase subunit A; gyrase A C-terminal domain, GYRA C-terminal domain, DNA wrapping, beta-strand-bearing proline, ATP-binding; HET: DNA; 2.19A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=92.49 E-value=14 Score=40.07 Aligned_cols=233 Identities=10% Similarity=0.052 Sum_probs=132.8
Q ss_pred EcCCCCEEEEEECCCcEEEEeCCC---------CeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCC---C-
Q 003236 563 FSPDGKLLATGGHDKKAVLWCTES---------FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTEN---P- 629 (837)
Q Consensus 563 fSpdg~~Lasgs~Dg~I~VWd~~t---------~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~---~- 629 (837)
+-++..++++.+.+|.|+--.+.. +..-..++ ..+.+..+........|+..+..|.++-+.... .
T Consensus 3 lI~~e~~~v~lT~~GyIKr~~l~~y~~~~r~g~g~~~~~lk-e~D~l~~~~~~~t~d~ll~fT~~G~~~~~~~~eip~~~ 81 (370)
T 3l6v_A 3 LIAPEDVVVTLSHAGYAKRQPVSAYRAQRRGGRGRSAASTK-EEDFIDQLWLVNTHDTLLTFTSSGKVFWLPVHQLPEAG 81 (370)
T ss_dssp CCCCCCEEEEEESSCEEEEEEHHHHHHTCCCCCCSEEEECS-CCCCEEEEEEECTTCEEEEEETTSEEEEEEGGGSCBCC
T ss_pred cccCCCEEEEEeCCCEEEEeeHHHhhhhccCCCCceecccC-CCCEEEEEEEecCCCEEEEEeCCCeEEEEEHHHCcCCC
Confidence 346778999999999998765432 22333444 355666666666667788888888877665431 1
Q ss_pred ----CceeE---EeeccccceEEEEEcC--CCCeEEEEEeCCCcEEEEECCC-------CeeeeEEecCCCeeEEEEecC
Q 003236 630 ----DYSLR---TFTGHSTTVMSLDFHP--SKEDLLCSCDNNSEIRYWSINN-------GSCAGVFKCQSGATQMRFQPR 693 (837)
Q Consensus 630 ----~~~~~---~~~~h~~~V~sl~fsp--dg~~llasgs~Dg~I~vwDl~t-------~~~i~~~~~~~~i~sl~~sp~ 693 (837)
...+. .+. ....|.++.... +....++.++..|.++...+.. +.....+.....+..+.....
T Consensus 82 r~a~G~~i~~ll~L~-~~e~Iv~~~~~~~~~~~~~ll~~T~~G~vKrt~l~e~~~~~~~G~~ai~L~~~d~lv~v~~~~~ 160 (370)
T 3l6v_A 82 SNARGRPIINWIPLE-SGERVQAVLPVREYADNRYVFMATRNGTVKKTPLSEFAFRLARGKIAINLDEGDALVGVALTDG 160 (370)
T ss_dssp TTSCCEEGGGSCCCC-TTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCSCCTTCEESSCCCTTCCEEEEEEECS
T ss_pred cccCCcCHhhccCCC-CCCEEEEEEEeccCCCCcEEEEEeCCCeEEEeEHHHhhcccCCceEEEEeCCCCEEEEEEEeCC
Confidence 11111 122 234555554332 1233556788899999887643 222223333455666666666
Q ss_pred CCEEEEEEcCCeEEEEECCC---------CeEEEEEcCCCCCEEEEEEcC------------------------------
Q 003236 694 LGRILAAAIENYISILDVET---------QVCRLKLQGHKNQVHSVCWNT------------------------------ 734 (837)
Q Consensus 694 g~~llags~dg~I~iwDl~s---------~~~~~~l~~h~~~V~sl~~sp------------------------------ 734 (837)
...++..+..|.+..|+... |.....+. ....|.++...+
T Consensus 161 ~~~i~l~T~~G~~irf~~~~v~~~gR~a~GV~~i~L~-~~d~Vv~~~~~~~~~~~~~~~~~~~~~~~~~t~~g~~~~~~~ 239 (370)
T 3l6v_A 161 DRDVLLFASNGKTVRFGESTVRSMGRTATGVRGIRLA-KGEEVVSLIVSERAGGVEDEVEDESAEEVVETTDGAEPAVID 239 (370)
T ss_dssp CCEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCC-TTCCEEEEEEECCC----------------------------
T ss_pred CceEEEEeCCCeEEEEEccccCccCCCCCCeeeEEeC-CCCEEEEEEEeccccccccccccccccccccccccccccccc
Confidence 67899999999888887542 22222222 234455554443
Q ss_pred -----CCCEEEEEe-CCeEEEEEcCCCCC----ceeEE--EeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECC
Q 003236 735 -----SGEYLASVS-DELVRVWSIGSGSK----GECIH--ELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMT 798 (837)
Q Consensus 735 -----dg~~Lasgs-Dg~I~IwDl~s~~~----~~~i~--~~~~~~~~I~sv~fspdg~~L~sgs~dg~I~IwDl~ 798 (837)
++..|++.+ .|..+...+..-.. ..-+. .+....+.+..+.+..+...|+..+..|.+.-..+.
T Consensus 240 ~~~~~~~~~il~vTe~G~gKrt~~~e~~~~~Rg~kGv~~~k~~~~~g~lv~~~~v~~~d~i~liT~~G~~iR~~v~ 315 (370)
T 3l6v_A 240 VADNGDVAYILTATENGYGKRTPLAEYPRKGRGTQGVIGIQTTERNGKLVRAVLLGSTDEVMLISDGGTLVRTRGS 315 (370)
T ss_dssp -------CEEEEEETTSEEEEEEGGGSCCBCTTSCCEESSCCCTTTCSEEEEEEECTTCEEEEEETTCCEEEEEGG
T ss_pred cccccCCceEEEeeCCCCEEEEEHHHhcccccCCcceEEEEecCCCCcEEEEEEeCCCceEEEEcCCCeEEEeeHh
Confidence 344666666 88888887753211 11111 222233455555555555677778888866666553
|
| >3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=92.49 E-value=11 Score=39.21 Aligned_cols=197 Identities=10% Similarity=-0.018 Sum_probs=111.0
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCeEEEE---EcCCCCceeEEeeccccceEEEEEcCC-CCeEEEEEeCCCcEEEEECCCC
Q 003236 598 QWITDVRFSPSLSRLATSSADRTVRVW---DTENPDYSLRTFTGHSTTVMSLDFHPS-KEDLLCSCDNNSEIRYWSINNG 673 (837)
Q Consensus 598 ~~I~~l~fspdg~~Latgs~Dg~I~IW---Dl~~~~~~~~~~~~h~~~V~sl~fspd-g~~llasgs~Dg~I~vwDl~t~ 673 (837)
+.+..+.......+|+..+.+|.++-- ++......- +......|..+.. .+ .+..++..+.+|.|+...+...
T Consensus 24 D~~~~~~~~~t~~~ll~fT~~G~v~~~~~~~lp~~~~~~--ll~~~e~i~~v~~-~~~~~~~~v~~T~~G~iKr~~l~~~ 100 (276)
T 3no0_A 24 APVVNILRVPFTEGLFLVSNRGRVYWIAGSQALQGSKVS--LKSREEKIVGAFI-REKFGNRLLLATKKGYVKKIPLAEF 100 (276)
T ss_dssp CCEEEEEEEETTSCEEEEETTSEEEEECSHHHHTSEECC--CSSTTCCEEEEEE-GGGSCSEEEEEETTSEEEEEEGGGT
T ss_pred CeEEEEEEECCCCEEEEEcCCCeEEEEEhhhCccCcccc--cCCCCCEEEEEEC-CcCCCCEEEEEeCCCEEEEEEHHHh
Confidence 345444444444556666667765543 332211100 1223445655544 32 2346668888999999887543
Q ss_pred ------eeeeEEecCCCeeEEEEecCCCEEEEEEcCCeEEEEECCC---------CeEEEEEcCCCCCEEEEEEcCCCCE
Q 003236 674 ------SCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVET---------QVCRLKLQGHKNQVHSVCWNTSGEY 738 (837)
Q Consensus 674 ------~~i~~~~~~~~i~sl~~sp~g~~llags~dg~I~iwDl~s---------~~~~~~l~~h~~~V~sl~~spdg~~ 738 (837)
.....+.....+..+........++..+..|.+..+.... |.....+.. ...|.++...+++.+
T Consensus 101 ~~~~~G~~~i~lkegD~l~~~~~~~~~~~ill~T~~G~~~r~~~~eip~~gR~a~Gv~~i~L~~-~d~vv~~~~~~~~~~ 179 (276)
T 3no0_A 101 EYKAQGMPIIKLTEGDEVVSIASSVDETHILLFTKKGRVARFSVREVPPSTPGARGVQGIKLEK-NDETSGLRIWNGEPY 179 (276)
T ss_dssp TTCSTTEECSCCCTTCCEEEEEECCSSCEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCCT-TCCEEEEEEESSCSE
T ss_pred hhhcCCeEEEecCCCCEEEEEEEeCCCCEEEEEECCCEEEEEEhhhCCCcCCCCCCEEEEccCC-CCEEEEEEEeCCCCE
Confidence 2222333445666666666667899999999988887532 222223332 355666655555556
Q ss_pred EEEEe-CCeEEEEEcCCCCC----ceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEE--EECCC
Q 003236 739 LASVS-DELVRVWSIGSGSK----GECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLEL--WNMTE 799 (837)
Q Consensus 739 Lasgs-Dg~I~IwDl~s~~~----~~~i~~~~~~~~~I~sv~fspdg~~L~sgs~dg~I~I--wDl~s 799 (837)
++..+ .|.++...+..-.. ..-+..+ .....+..+....+...++..+.+|.+.. ++..+
T Consensus 180 ll~~T~~G~~kr~~~~e~~~~~R~gkGv~~i-~~~~~lv~~~~~~~~~~i~~~t~~G~~ir~~~~~~~ 246 (276)
T 3no0_A 180 LLVITAKGRVKKISHEEIPKTNRGVKGTEVS-GTKDTLVDLIPIKEEVELLITTKNGKAFYDKINQKD 246 (276)
T ss_dssp EEEEETTSCEEEEEGGGSCCCCTTCCCEECC-CSSSCEEEEEEESSEEEEEEEETTSCEEEEEEEGGG
T ss_pred EEEEeCCCcEEEeEHHHcccCCCCCcceEEE-cCCCcEEEEEEeCCCCEEEEEcCCCeEEEeeeCHHH
Confidence 66666 88888888753211 1122222 23445555544445557888888887777 77643
|
| >3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A | Back alignment and structure |
|---|
Probab=92.46 E-value=0.82 Score=52.08 Aligned_cols=126 Identities=14% Similarity=0.174 Sum_probs=85.8
Q ss_pred ccceEEEEEcCCCCeEEEEEeCCCcEEEEECCC------Cee-------eeEEecCCCeeEEEEecCCCEEEEEEcCCeE
Q 003236 640 STTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN------GSC-------AGVFKCQSGATQMRFQPRLGRILAAAIENYI 706 (837)
Q Consensus 640 ~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t------~~~-------i~~~~~~~~i~sl~~sp~g~~llags~dg~I 706 (837)
......+.++|||+++++++-.+.+|.++|+++ ++. +......-+....+|.++|..+.+..-|..|
T Consensus 322 pksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~GlGPlHt~Fd~~G~aYTtlfidSqv 401 (638)
T 3sbq_A 322 PKNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPELGLGPLHTTFDGRGNAYTTLFIDSQV 401 (638)
T ss_dssp SSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBCCSCEEEEEECSSSEEEEEETTTTEE
T ss_pred CCCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeeccCCCcccEEEECCCCceEeeeeecceE
Confidence 345667899999999999999999999999874 221 2333345678889999998444444579999
Q ss_pred EEEECCCC----------eEEEEEcCCCCCEEEEEE------cCCCCEEEEEe----CC----------eEEEEEcCCCC
Q 003236 707 SILDVETQ----------VCRLKLQGHKNQVHSVCW------NTSGEYLASVS----DE----------LVRVWSIGSGS 756 (837)
Q Consensus 707 ~iwDl~s~----------~~~~~l~~h~~~V~sl~~------spdg~~Lasgs----Dg----------~I~IwDl~s~~ 756 (837)
..|++... ..+..+..|-.+-. +.- .+||++|++.. |. .-.++|+.. .
T Consensus 402 vkWni~~a~~~~~g~~~~~v~~k~dv~YqpGH-~~~~~get~~~dGk~lv~lnK~skdrfl~vGpl~pen~QlidIsG-d 479 (638)
T 3sbq_A 402 VKWNMEEAVRAYKGEKVNYIKQKLDVHYQPGH-LHASLCETNEADGKWLVALSKFSKDRFLPVGPLHPENDQLIDISG-D 479 (638)
T ss_dssp EEEEHHHHHHHHTTCCCCCEEEEEECSSCEEE-EEETTTTSTTCCSCEEEEEESCCTTSSCCCSSSCCEEEEEEECSS-S
T ss_pred EEEeccHHHHHhcCccCCeeeeccccccCCcc-cccCCCccCCCCccEEEEecccccccCcCCCCCCCCcceeEecCC-C
Confidence 99998753 45556665544333 322 57899998875 44 347788854 3
Q ss_pred CceeEEEeecC
Q 003236 757 KGECIHELSCT 767 (837)
Q Consensus 757 ~~~~i~~~~~~ 767 (837)
+.+.++.....
T Consensus 480 kM~lv~D~P~~ 490 (638)
T 3sbq_A 480 EMKLVHDGPTF 490 (638)
T ss_dssp SCEEEEEEEES
T ss_pred ceEEEecCCCC
Confidence 44566555443
|
| >1sqj_A OXG-RCBH, oligoxyloglucan reducing-END-specific cellobiohydrolase; beta-propeller; 2.20A {Geotrichum SP} SCOP: b.69.13.1 b.69.13.1 PDB: 2ebs_A* | Back alignment and structure |
|---|
Probab=92.11 E-value=16 Score=43.75 Aligned_cols=147 Identities=16% Similarity=0.148 Sum_probs=78.0
Q ss_pred CCCeEEEEEcCC-CCEEEEEECCCcEEEEeCCCCeEEEEeccC-------CCCeEEEEEcCC-CCEEEEEeCCCe----E
Q 003236 555 TSKVESCHFSPD-GKLLATGGHDKKAVLWCTESFTVKSTLEEH-------TQWITDVRFSPS-LSRLATSSADRT----V 621 (837)
Q Consensus 555 ~~~V~sl~fSpd-g~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h-------~~~I~~l~fspd-g~~Latgs~Dg~----I 621 (837)
.+.|.+|+++|. ...+++++..+.|...+ +.++.-..+..+ ...|.+|+++|. ...++.+..+.. -
T Consensus 14 ~g~i~~i~~~p~~~~~~~a~~~~ggv~rS~-DgG~tW~~~~~~~~~~~~~~~~i~~ia~dp~~~~~i~~~~g~~~~~~~~ 92 (789)
T 1sqj_A 14 GGYITGIVAHPKTKDLLYARTDIGGAYRWD-AGTSKWIPLNDFIEAQDMNIMGTESIALDPNNPDRLYLAQGRYVGDEWA 92 (789)
T ss_dssp CSCEEEEEECSSSTTCEEEEESSSCEEEEE-TTTTEEEESCTTCCGGGGGGCSEEEEEEETTEEEEEEEEECSCTTSSCC
T ss_pred CCcEEEEEECCCCCCEEEEEecCCCEEEec-CCCCCeeECccCCCcccccCCceeEEEECCCCCCEEEEEeCccCCCccc
Confidence 457999999995 34666677777776665 334433333322 246999999984 344555443211 3
Q ss_pred EEEEcCCCCceeEEeecc---------ccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeeEEe-------cCCCe
Q 003236 622 RVWDTENPDYSLRTFTGH---------STTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK-------CQSGA 685 (837)
Q Consensus 622 ~IWDl~~~~~~~~~~~~h---------~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~-------~~~~i 685 (837)
.||.-.++.......... ...+..++++|.....++.+...+.|. .....|+.-..+. ....+
T Consensus 93 ~v~~S~DgG~TW~~~~~~~~~~~~~~~~~~~~~iav~p~~~~~v~~g~~~~gl~-~S~DgG~TW~~~~~~~~~~~~~~~~ 171 (789)
T 1sqj_A 93 AFYVSEDRGQSFTIYESPFPMGANDMGRNNGERLAVNPFNSNEVWMGTRTEGIW-KSSDRAKTWTNVTSIPDAFTNGIGY 171 (789)
T ss_dssp EEEEESSTTSEEEEEECSSCCCTTSTTTTSCCCEEEETTEEEEEEEECSSSCEE-EESSTTSSCEEETTSCCCCSTTTCE
T ss_pred EEEEECCCCCcceeccCCcccCccCCCccceeEEEEcCCCCCEEEEEeccCCEE-EECCCCcccCCCccCccccCCCCCe
Confidence 455444433222222110 113567888886555565665344332 2222232222221 12457
Q ss_pred eEEEEecC-CCEEEEEEcC
Q 003236 686 TQMRFQPR-LGRILAAAIE 703 (837)
Q Consensus 686 ~sl~~sp~-g~~llags~d 703 (837)
..+.++|. .+.++++..+
T Consensus 172 ~~i~~~p~~~~~~~~~~~~ 190 (789)
T 1sqj_A 172 TSVIFDPERNGTIYASATA 190 (789)
T ss_dssp EEEEECTTSTTCEEEEESS
T ss_pred EEEEECCCCCCEEEEEEcC
Confidence 78888884 4467776655
|
| >3l6v_A GYRA, DNA gyrase subunit A; gyrase A C-terminal domain, GYRA C-terminal domain, DNA wrapping, beta-strand-bearing proline, ATP-binding; HET: DNA; 2.19A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=90.97 E-value=20 Score=38.81 Aligned_cols=225 Identities=9% Similarity=0.010 Sum_probs=118.9
Q ss_pred EcCCCCEEEEEeCCCeEEEEEcCC-------C-CceeEEeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEE---CCC-
Q 003236 605 FSPSLSRLATSSADRTVRVWDTEN-------P-DYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWS---INN- 672 (837)
Q Consensus 605 fspdg~~Latgs~Dg~I~IWDl~~-------~-~~~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwD---l~t- 672 (837)
+-++..++++.+.+|.|+--.+.. + ......+. ....+..+........+++ .+..|.++.+. +..
T Consensus 3 lI~~e~~~v~lT~~GyIKr~~l~~y~~~~r~g~g~~~~~lk-e~D~l~~~~~~~t~d~ll~-fT~~G~~~~~~~~eip~~ 80 (370)
T 3l6v_A 3 LIAPEDVVVTLSHAGYAKRQPVSAYRAQRRGGRGRSAASTK-EEDFIDQLWLVNTHDTLLT-FTSSGKVFWLPVHQLPEA 80 (370)
T ss_dssp CCCCCCEEEEEESSCEEEEEEHHHHHHTCCCCCCSEEEECS-CCCCEEEEEEECTTCEEEE-EETTSEEEEEEGGGSCBC
T ss_pred cccCCCEEEEEeCCCEEEEeeHHHhhhhccCCCCceecccC-CCCEEEEEEEecCCCEEEE-EeCCCeEEEEEHHHCcCC
Confidence 346778999999999999865532 1 11112222 3445555555544454554 44467666554 322
Q ss_pred -----Ceeee---EEecCCCeeEEEEec---CCCEEEEEEcCCeEEEEECCC-------CeEEEEEcCCCCCEEEEEEcC
Q 003236 673 -----GSCAG---VFKCQSGATQMRFQP---RLGRILAAAIENYISILDVET-------QVCRLKLQGHKNQVHSVCWNT 734 (837)
Q Consensus 673 -----~~~i~---~~~~~~~i~sl~~sp---~g~~llags~dg~I~iwDl~s-------~~~~~~l~~h~~~V~sl~~sp 734 (837)
|..+. .+.....|..+.... .+.+++.++..|.++...+.. +.....+.. ...+..+....
T Consensus 81 ~r~a~G~~i~~ll~L~~~e~Iv~~~~~~~~~~~~~ll~~T~~G~vKrt~l~e~~~~~~~G~~ai~L~~-~d~lv~v~~~~ 159 (370)
T 3l6v_A 81 GSNARGRPIINWIPLESGERVQAVLPVREYADNRYVFMATRNGTVKKTPLSEFAFRLARGKIAINLDE-GDALVGVALTD 159 (370)
T ss_dssp CTTSCCEEGGGSCCCCTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCSCCTTCEESSCCCT-TCCEEEEEEEC
T ss_pred CcccCCcCHhhccCCCCCCEEEEEEEeccCCCCcEEEEEeCCCeEEEeEHHHhhcccCCceEEEEeCC-CCEEEEEEEeC
Confidence 22221 122345566655442 456899999999999887542 222233433 34455554444
Q ss_pred CCC-EEEEEeCCeEEEEEcCCCC------CceeEEEeecCCCceEEEEEeC-----------------------------
Q 003236 735 SGE-YLASVSDELVRVWSIGSGS------KGECIHELSCTGNKFHSCVFHP----------------------------- 778 (837)
Q Consensus 735 dg~-~LasgsDg~I~IwDl~s~~------~~~~i~~~~~~~~~I~sv~fsp----------------------------- 778 (837)
... +++...+|.+..|+...-. .......+. .+..|.++...+
T Consensus 160 ~~~~i~l~T~~G~~irf~~~~v~~~gR~a~GV~~i~L~-~~d~Vv~~~~~~~~~~~~~~~~~~~~~~~~~t~~g~~~~~~ 238 (370)
T 3l6v_A 160 GDRDVLLFASNGKTVRFGESTVRSMGRTATGVRGIRLA-KGEEVVSLIVSERAGGVEDEVEDESAEEVVETTDGAEPAVI 238 (370)
T ss_dssp SCCEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCC-TTCCEEEEEEECCC---------------------------
T ss_pred CCceEEEEeCCCeEEEEEccccCccCCCCCCeeeEEeC-CCCEEEEEEEecccccccccccccccccccccccccccccc
Confidence 444 4444448887777754311 011111121 234455444443
Q ss_pred ------CCCEEEEEEcCCeEEEEECCCCcE--------E--EeccCCCCeeEEEEeCCCCEEEEEECCCcE
Q 003236 779 ------TFPSLLVIGCYETLELWNMTENKT--------L--TLSAHDKLVSSLAASTVNGMVASASHDKCV 833 (837)
Q Consensus 779 ------dg~~L~sgs~dg~I~IwDl~s~~~--------~--~l~~h~~~V~sla~spdg~~LaSgs~DG~I 833 (837)
++..|++.+..|..+...+..-.. . .+....+.+..+.+..+...|+..+..|.+
T Consensus 239 ~~~~~~~~~~il~vTe~G~gKrt~~~e~~~~~Rg~kGv~~~k~~~~~g~lv~~~~v~~~d~i~liT~~G~~ 309 (370)
T 3l6v_A 239 DVADNGDVAYILTATENGYGKRTPLAEYPRKGRGTQGVIGIQTTERNGKLVRAVLLGSTDEVMLISDGGTL 309 (370)
T ss_dssp --------CEEEEEETTSEEEEEEGGGSCCBCTTSCCEESSCCCTTTCSEEEEEEECTTCEEEEEETTCCE
T ss_pred ccccccCCceEEEeeCCCCEEEEEHHHhcccccCCcceEEEEecCCCCcEEEEEEeCCCceEEEEcCCCeE
Confidence 456899999999888887643221 1 222333455555444444455555566654
|
| >3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=90.71 E-value=19 Score=38.20 Aligned_cols=194 Identities=12% Similarity=0.028 Sum_probs=106.6
Q ss_pred CeEEEEEcCCCCEEEEEECCCcEEEEe---CC------CCeEEEE---eccCCCCeEEEEEcC---CCCEEEEEeCCCeE
Q 003236 557 KVESCHFSPDGKLLATGGHDKKAVLWC---TE------SFTVKST---LEEHTQWITDVRFSP---SLSRLATSSADRTV 621 (837)
Q Consensus 557 ~V~sl~fSpdg~~Lasgs~Dg~I~VWd---~~------t~~~~~~---l~~h~~~I~~l~fsp---dg~~Latgs~Dg~I 621 (837)
.+..+........|+.-+..|.++-.. +. .|..+.. +. ....|.++...+ +..++++++.+|.|
T Consensus 43 ~~~~~~~~~t~d~ll~fT~~Gr~y~~~~~~lp~~~r~~~G~~i~~~l~l~-~~e~i~~~~~~~~~~~e~~~v~~T~~G~i 121 (327)
T 3uc1_A 43 IVAHFFVCSTHDLILFFTTQGRVYRAKAYDLPEASRTARGQHVANLLAFQ-PEERIAQVIQIRGYTDAPYLVLATRNGLV 121 (327)
T ss_dssp CEEEEEEEETTSEEEEEETTSEEEEEEGGGSCBCCSSSCCEEHHHHTTCC-TTCCEEEEEEESSTTSSSEEEEEETTSEE
T ss_pred EEEEEEEeCCCCEEEEEeCCCeEEEEEHHHCcCCCccCCCEEHHHccCCC-CCCEEEEEEEeccCCCCCEEEEEcCCCEE
Confidence 344444444455666666777766554 32 2333211 22 234555554433 57899999999999
Q ss_pred EEEEcCCCC------ceeEEeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECC--C---------CeeeeEEecCCC
Q 003236 622 RVWDTENPD------YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSIN--N---------GSCAGVFKCQSG 684 (837)
Q Consensus 622 ~IWDl~~~~------~~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~--t---------~~~i~~~~~~~~ 684 (837)
+...+..-. .....+.. ...+..+........++ ..+..|.+..+.+. . |.....+.....
T Consensus 122 Kr~~l~~~~~~~r~G~~~i~lke-~D~lv~~~~~~~~d~il-l~T~~G~~~rf~~~~~eip~~gr~a~Gv~~i~L~~~d~ 199 (327)
T 3uc1_A 122 KKSKLTDFDSNRSGGIVAVNLRD-NDELVGAVLCSAGDDLL-LVSANGQSIRFSATDEALRPMGRATSGVQGMRFNIDDR 199 (327)
T ss_dssp EEEEGGGGCCCCSSCEESCBCCT-TCCEEEEEEECTTCEEE-EEETTSEEEEEECCTTTSCCCCTTSBCEESSCCCTTCC
T ss_pred EEeEHHHhhccccCceEEEEECC-CCEEEEEEEecCCCEEE-EEECCCeEEEEECcccccCcCCcCCCCeeeecCCCCCE
Confidence 998875411 11112233 34455544444445444 45568888877766 2 111122333456
Q ss_pred eeEEEEecCCCEEEEEEcCCeEEEEECCCC-------eEEE--EEcCCCCCEEEEEEcC-CCCEEEEEeCCeEEEEEcC
Q 003236 685 ATQMRFQPRLGRILAAAIENYISILDVETQ-------VCRL--KLQGHKNQVHSVCWNT-SGEYLASVSDELVRVWSIG 753 (837)
Q Consensus 685 i~sl~~sp~g~~llags~dg~I~iwDl~s~-------~~~~--~l~~h~~~V~sl~~sp-dg~~LasgsDg~I~IwDl~ 753 (837)
|..+...+.+.+++.++..|.++...+..- +-+. .+..-.+.+..+.... +..+++...+|.+..++..
T Consensus 200 Vv~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~R~~~G~~~~~l~~~~d~lv~~~~~~~~~~i~l~T~~G~~ir~~~~ 278 (327)
T 3uc1_A 200 LLSLNVVREGTYLLVATSGGYAKRTAIEEYPVQGRGGKGVLTVMYDRRRGRLVGALIVDDDSELYAVTSGGGVIRTAAR 278 (327)
T ss_dssp EEEEEECCTTCEEEEEETTSEEEEEEGGGSCBCCTTSCCEESSCCCTTTCSEEEEEEECTTCEEEEEEGGGCEEEEEGG
T ss_pred EEEEEEECCCCEEEEEeCCCcEEEEEHHHccccCcCCCcEEEEEecCCCCeEEEEEEeCCCccEEEEcCCCeEEEEehh
Confidence 777777667778999999999988875421 1122 2222133455544433 3444454557777777664
|
| >1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli} | Back alignment and structure |
|---|
Probab=90.32 E-value=20 Score=37.69 Aligned_cols=223 Identities=10% Similarity=0.028 Sum_probs=115.5
Q ss_pred CCCEEEEEeCCCeEEEEEcCCCCce--------eEEeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEEC---CC----
Q 003236 608 SLSRLATSSADRTVRVWDTENPDYS--------LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSI---NN---- 672 (837)
Q Consensus 608 dg~~Latgs~Dg~I~IWDl~~~~~~--------~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl---~t---- 672 (837)
+..++++.+.+|.|+--.+.+-... ...+..+ +.+..+........++ ..+..|.++-+.. ..
T Consensus 2 ~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~~ke~-D~l~~~~~~~~~~~ll-~fT~~G~~~~~~~~elp~~~~~ 79 (307)
T 1zi0_A 2 QEDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEE-DFIDRLLVANTHDHIL-CFSSRGRVYSMKVYQLPEATRG 79 (307)
T ss_dssp CCEEEEEEETTSEEEEEECC---------------------CCEEEEEEEETTCEEE-EEETTSEEEEEEGGGSCCCCSS
T ss_pred CCcEEEEEeCCCEEEEeeHHHhhhhccCCCCceeeeeCCC-CEEEEEEEECCCCEEE-EEECCCEEEEEEhhHCcCCCCC
Confidence 4567888899999987766532110 0112222 3333333333334444 3444676655543 22
Q ss_pred --Ceeee---EEecCCCeeEEEEe---cCCCEEEEEEcCCeEEEEECCC-------CeEEEEEcCCCCCEEEEEEcC-CC
Q 003236 673 --GSCAG---VFKCQSGATQMRFQ---PRLGRILAAAIENYISILDVET-------QVCRLKLQGHKNQVHSVCWNT-SG 736 (837)
Q Consensus 673 --~~~i~---~~~~~~~i~sl~~s---p~g~~llags~dg~I~iwDl~s-------~~~~~~l~~h~~~V~sl~~sp-dg 736 (837)
|..+. .+.....|..+... .++.+++.++..|.++...+.. +.....+..+ +.+..+.... +.
T Consensus 80 a~G~~i~~~l~l~~~e~i~~~~~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~r~G~~~i~l~~~-d~lv~~~~~~~~~ 158 (307)
T 1zi0_A 80 ARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVDG-DELIGVDLTSGED 158 (307)
T ss_dssp SCCEEGGGTSCCCTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGTTCCTTCEESSCCCTT-CCEEEEEEECTTC
T ss_pred CCCeEhhhccCCCCCCEEEEEEEeccCCCCcEEEEEeCCCeEEEEEHHHhhccccCCeEEEEECCC-CEEEEEEEeCCCC
Confidence 22211 12334456655443 3456899999999999887642 2222334434 4555554444 44
Q ss_pred CEEEEEeCCeEEEEEcCCCCC------ceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCc--------E
Q 003236 737 EYLASVSDELVRVWSIGSGSK------GECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENK--------T 802 (837)
Q Consensus 737 ~~LasgsDg~I~IwDl~s~~~------~~~i~~~~~~~~~I~sv~fspdg~~L~sgs~dg~I~IwDl~s~~--------~ 802 (837)
.+++..++|.+..++...-.. ......+. .+..|..+....++..|++.+..|.++-.++.... .
T Consensus 159 ~i~l~T~~G~~irf~~~~v~~~gr~a~Gv~~i~L~-~~d~Vv~~~~~~~~~~ll~~T~~G~~Kr~~~~e~~~~~Rg~kG~ 237 (307)
T 1zi0_A 159 EVMLFSAEGKVVRFKESSVRAMGCNTTGVRGIRLG-EGDKVVSLIVPRGDGAILTATQNGYGKRTAVAEYPTKSRATKGV 237 (307)
T ss_dssp EEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCC-TTCCEEEEECCCSSCEEEEEETTSEEEEECGGGSCCCCTTSCCE
T ss_pred EEEEECCCCcEEEEEHHHcCccCCCCCCeEeEEeC-CCCEEEEEEEecCCCEEEEEEcCCceEEEEHHHhccCCCCCCCE
Confidence 455555588888887643211 11111222 24556666655566779999999988888763321 1
Q ss_pred E--EeccCCCCeeEEEEeCCCCEEEEEECCCcEE
Q 003236 803 L--TLSAHDKLVSSLAASTVNGMVASASHDKCVK 834 (837)
Q Consensus 803 ~--~l~~h~~~V~sla~spdg~~LaSgs~DG~I~ 834 (837)
. .+..-.+.+..+....+...|+..+.+|.+.
T Consensus 238 ~~~~~~~~~~~lv~~~~v~~~~~l~~~t~~g~~i 271 (307)
T 1zi0_A 238 ISIKVTERNGLVVGAVQVDDCDQIMMITDAGTLV 271 (307)
T ss_dssp ESSCCCTTTCSEEEEEEECTTCEEEEEESSCCEE
T ss_pred EeeEecCCCCeEEEEEEeCCCceEEEEcCCCcEE
Confidence 1 2222334555554444445455556666543
|
| >3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=90.31 E-value=24 Score=38.58 Aligned_cols=226 Identities=4% Similarity=-0.008 Sum_probs=117.0
Q ss_pred CeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCc-----------eeEEeeccccceEEEEEcCCCCeEEEEEeCCCcEEE
Q 003236 599 WITDVRFSPSLSRLATSSADRTVRVWDTENPDY-----------SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRY 667 (837)
Q Consensus 599 ~I~~l~fspdg~~Latgs~Dg~I~IWDl~~~~~-----------~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~v 667 (837)
.|..|+.. ..+.+.-..||.|+.|-...... ..-........|..|+... ...+.-..||.|+.
T Consensus 76 ~v~~va~G--~~h~~~l~~~G~v~~wG~n~~GqLG~~~~~~~~~~~P~~v~~~~~i~~va~G~---~hs~al~~~G~v~~ 150 (423)
T 3mvd_K 76 DAVDISAG--GMHNLVLTKSGDIYSFGCNDEGALGRDTSEDGSESKPDLIDLPGKALCISAGD---SHSACLLEDGRVFA 150 (423)
T ss_dssp SEEEEEEC--SSEEEEEETTSCEEEEECCSSSTTCSCCCSTTSSSSCEECCCSSCEEEEEECS---SEEEEEETTSCEEE
T ss_pred CceEEeeC--CCeEEEEeCCCeEEEeECCCCcCCCCCCcCCccccCCeEEcCCCCEEEEEcCc---CeEEEEeCCCeEEE
Confidence 46666654 44666667899999996543110 0011111234566666653 23334567899999
Q ss_pred EEC--CC-Cee--------eeEEec--CCCeeEEEEecCCCEEEEEEcCCeEEEEECCCC--------------------
Q 003236 668 WSI--NN-GSC--------AGVFKC--QSGATQMRFQPRLGRILAAAIENYISILDVETQ-------------------- 714 (837)
Q Consensus 668 wDl--~t-~~~--------i~~~~~--~~~i~sl~~sp~g~~llags~dg~I~iwDl~s~-------------------- 714 (837)
|-. .. +.+ ...... ...|..++. ...+.++...+|.|+.|-....
T Consensus 151 wG~~~n~~GqlG~~~~~~~~~p~~~~~~~~i~~va~--G~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~~~~ 228 (423)
T 3mvd_K 151 WGSFRDSHGNMGLTIDGNKRTPIDLMEGTVCCSIAS--GADHLVILTTAGKVFTVGCAEQGQLGRLSERSISGEGRRGKR 228 (423)
T ss_dssp EECEECSSSEEESBTTBCEEEEEESSTTCCEEEEEE--CSSEEEEEETTSCEEEEECCTTSTTSSCCTTTTTSCSTTTTT
T ss_pred EeCCCCCCCCcCcCCCCCCceeeEecCCCcEEEEec--CCCeEEEEecCCeEEEeeCCcCCccCCCcccccccccccccc
Confidence 985 22 221 111111 223444443 4467778888999999953321
Q ss_pred ---eEEEEEcCCCCCEEEEEEcCCCCEEEE-EeCCeEEEEEcCCCC--------CceeEEEeecCCCceEEEEEeCCCCE
Q 003236 715 ---VCRLKLQGHKNQVHSVCWNTSGEYLAS-VSDELVRVWSIGSGS--------KGECIHELSCTGNKFHSCVFHPTFPS 782 (837)
Q Consensus 715 ---~~~~~l~~h~~~V~sl~~spdg~~Las-gsDg~I~IwDl~s~~--------~~~~i~~~~~~~~~I~sv~fspdg~~ 782 (837)
.+..........|..|+..... .++. ..++.|+.|-..... ..............|..++. ...+
T Consensus 229 ~~~~p~~v~~~~~~~v~~i~~g~~~-~~~~~~~~g~v~~wG~n~~gqlg~~~~~~~~~~~p~~~~~~~v~~ia~--G~~h 305 (423)
T 3mvd_K 229 DLLRPTQLIITRAKPFEAIWATNYC-TFMRESQTQVIWATGLNNFKQLAHETKGKEFALTPIKTELKDIRHIAG--GQHH 305 (423)
T ss_dssp TTSSCEEECCTTCCCEEEEEEETTE-EEEEETTTCCEEEEEECTTCTTSSCCTTCSEEEEEEEECCCSEEEEEE--CSSE
T ss_pred cccCCeEEeecCCccEEEEEECCcE-EEEEECCCCeEEEEeCCCCCcCCCCCCCCceeeeeEEcCCCCeEEEEc--ccCe
Confidence 1111111223456666554322 2333 248889999754321 01111112222344554443 3446
Q ss_pred EEEEEcCCeEEEEECCCC---------c----EEEeccCCCCeeEEEEeCCCCEEEEEECCCcEEEe
Q 003236 783 LLVIGCYETLELWNMTEN---------K----TLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIW 836 (837)
Q Consensus 783 L~sgs~dg~I~IwDl~s~---------~----~~~l~~h~~~V~sla~spdg~~LaSgs~DG~I~IW 836 (837)
.++...++.|+.|-.... . +..+......|..|+... .+.+.-..||.|+.|
T Consensus 306 t~alt~~G~v~~wG~n~~GqLG~g~~~~~~~~p~~v~~l~~~v~~ia~G~--~hs~alt~~G~v~~w 370 (423)
T 3mvd_K 306 TVILTTDLKCSVVGRPEYGRLGLGDVKDVVEKPTIVKKLTEKIVSVGCGE--VCSYAVTIDGKLYSW 370 (423)
T ss_dssp EEEEETTCCEEEEECCGGGTTCSSSCCSCEEEEEECTTCCSCEEEEEEET--TEEEEEETTSCEEEE
T ss_pred EEEEeCCCcEEEEECCCCCCCCCCCccccccCceEeccCCCCEEEEEcCC--CeEEEEcCCCCEEEE
Confidence 677788889999965321 1 112222333677777653 334444688999888
|
| >1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1 | Back alignment and structure |
|---|
Probab=90.12 E-value=21 Score=37.62 Aligned_cols=189 Identities=12% Similarity=0.087 Sum_probs=106.1
Q ss_pred CCCCEEEEEeCCCeEEEEEcCCCCc------ee--EEeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCC---C--
Q 003236 607 PSLSRLATSSADRTVRVWDTENPDY------SL--RTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN---G-- 673 (837)
Q Consensus 607 pdg~~Latgs~Dg~I~IWDl~~~~~------~~--~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t---~-- 673 (837)
++..++++.+.+|.|+-..+..-.. -+ ..+.. ...+..+........++ ..+..|.++-+.... .
T Consensus 6 ~~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~lke-~D~l~~~~~~~~~~~ll-~~T~~G~~~~~~~~~ip~~~r 83 (312)
T 1suu_A 6 QKENIVVMLTKKGFLKRLSQNEYKLQGTGGKGLSSFDLND-GDEIVIALCVNTHDYLF-MISNEGKLYLINAYEIKDSSR 83 (312)
T ss_dssp --CEEEEEEETTCBEEEEEGGGSCBCCSSCCCEECCCCCT-TCCEEEEEEEETTCEEE-EEETTSEEEEEEGGGSCC---
T ss_pred CCCCEEEEEeCCCEEEEeEHHHhhccccCCCCceecccCC-CCEEEEEEEECCCCEEE-EEECCCeEEEEEHHHCCCCCc
Confidence 4567889999999999887653211 01 11222 23344444333334444 455678777665531 1
Q ss_pred ----ee---eeEEecCCCeeEEEEec---CCCEEEEEEcCCeEEEEECCC-------CeEEEEEcCCCCCEEEEEEcCCC
Q 003236 674 ----SC---AGVFKCQSGATQMRFQP---RLGRILAAAIENYISILDVET-------QVCRLKLQGHKNQVHSVCWNTSG 736 (837)
Q Consensus 674 ----~~---i~~~~~~~~i~sl~~sp---~g~~llags~dg~I~iwDl~s-------~~~~~~l~~h~~~V~sl~~spdg 736 (837)
.. ...+.....+..+...+ +..+++..+..|.++...+.. +.....+.. .+.+..+....++
T Consensus 84 ~~~G~~i~~~l~l~~~e~i~~~~~~~~~~~~~~ll~~T~~G~~kr~~l~~~~~~r~~G~~~i~L~~-~d~lv~~~~~~~~ 162 (312)
T 1suu_A 84 ASKGQNISELINLGDQEEILTIKNSKDLTDDAYLLLTTASGKIARFESTDFKAVKSRGVIVIKLND-KDFVTSAEIVFKD 162 (312)
T ss_dssp ----CBGGGTSCCCTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCC----CEECBCCCT-TCCEEEEEEECTT
T ss_pred cCCCcChhhccCCCCCCEEEEEEEeccCCCCCEEEEEeCCCeEEEEEHHHhhccCCCcEEEEecCC-CCEEEEEEEeCCC
Confidence 11 11122334555554443 467899999999999887743 233333443 4556655554444
Q ss_pred C-EEEEEeCCeEEEEEcCCC----C--CceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCC
Q 003236 737 E-YLASVSDELVRVWSIGSG----S--KGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTE 799 (837)
Q Consensus 737 ~-~LasgsDg~I~IwDl~s~----~--~~~~i~~~~~~~~~I~sv~fspdg~~L~sgs~dg~I~IwDl~s 799 (837)
. +++++.+|.+..+.+..- . .......+. .+..+..+....++..|++.+..|.++.+++..
T Consensus 163 ~~i~l~T~~G~~~r~~~~ev~~~gR~~~Gv~~i~L~-~~d~vv~~~~v~~~~~l~~vt~~G~~kr~~~~e 231 (312)
T 1suu_A 163 EKVICLSKKGSAFIFNSRDVRLTNRGTQGVCGMKLK-EGDLFVKVLSVKENPYLLIVSENGYGKRLNMSK 231 (312)
T ss_dssp CEEEEEETTSEEEEEEGGGSCBCCTTBCCEECCCCC-TTCCEEEEEECTTCSEEEEEETTSEEEEEEGGG
T ss_pred CEEEEEeCCCcEEEEEHHHccccCCCCCCeEeEEeC-CCCEEEEEEEECCCCeEEEEECCCceEEEEHHH
Confidence 4 444444998888887541 1 111222222 245566666666667899999999988888754
|
| >1sqj_A OXG-RCBH, oligoxyloglucan reducing-END-specific cellobiohydrolase; beta-propeller; 2.20A {Geotrichum SP} SCOP: b.69.13.1 b.69.13.1 PDB: 2ebs_A* | Back alignment and structure |
|---|
Probab=89.58 E-value=41 Score=40.24 Aligned_cols=144 Identities=11% Similarity=0.150 Sum_probs=72.0
Q ss_pred CCCeEEEEEcCC-CCEEEEEeCCCeEEEEEcCCCCceeEEeecc-------ccceEEEEEcCCCCeEEEEEeCCCc----
Q 003236 597 TQWITDVRFSPS-LSRLATSSADRTVRVWDTENPDYSLRTFTGH-------STTVMSLDFHPSKEDLLCSCDNNSE---- 664 (837)
Q Consensus 597 ~~~I~~l~fspd-g~~Latgs~Dg~I~IWDl~~~~~~~~~~~~h-------~~~V~sl~fspdg~~llasgs~Dg~---- 664 (837)
...|.+|+++|. ...++++...+.|...+=. ......+..+ ...|.+|+++|.....++.+..+..
T Consensus 14 ~g~i~~i~~~p~~~~~~~a~~~~ggv~rS~Dg--G~tW~~~~~~~~~~~~~~~~i~~ia~dp~~~~~i~~~~g~~~~~~~ 91 (789)
T 1sqj_A 14 GGYITGIVAHPKTKDLLYARTDIGGAYRWDAG--TSKWIPLNDFIEAQDMNIMGTESIALDPNNPDRLYLAQGRYVGDEW 91 (789)
T ss_dssp CSCEEEEEECSSSTTCEEEEESSSCEEEEETT--TTEEEESCTTCCGGGGGGCSEEEEEEETTEEEEEEEEECSCTTSSC
T ss_pred CCcEEEEEECCCCCCEEEEEecCCCEEEecCC--CCCeeECccCCCcccccCCceeEEEECCCCCCEEEEEeCccCCCcc
Confidence 468999999985 4566777777766554422 2222222221 2469999999864444444432211
Q ss_pred EEEE-ECCCCeeeeEEecC----------CCeeEEEEecCC-CEEEEEEcCCeEEEEECCCC---eEEEEEc---CCCCC
Q 003236 665 IRYW-SINNGSCAGVFKCQ----------SGATQMRFQPRL-GRILAAAIENYISILDVETQ---VCRLKLQ---GHKNQ 726 (837)
Q Consensus 665 I~vw-Dl~t~~~i~~~~~~----------~~i~sl~~sp~g-~~llags~dg~I~iwDl~s~---~~~~~l~---~h~~~ 726 (837)
-.|| ....|+.-..+... ..+..++++|.. +.++++...+.|.. ....+ +.+..+. .....
T Consensus 92 ~~v~~S~DgG~TW~~~~~~~~~~~~~~~~~~~~~iav~p~~~~~v~~g~~~~gl~~-S~DgG~TW~~~~~~~~~~~~~~~ 170 (789)
T 1sqj_A 92 AAFYVSEDRGQSFTIYESPFPMGANDMGRNNGERLAVNPFNSNEVWMGTRTEGIWK-SSDRAKTWTNVTSIPDAFTNGIG 170 (789)
T ss_dssp CEEEEESSTTSEEEEEECSSCCCTTSTTTTSCCCEEEETTEEEEEEEECSSSCEEE-ESSTTSSCEEETTSCCCCSTTTC
T ss_pred cEEEEECCCCCcceeccCCcccCccCCCccceeEEEEcCCCCCEEEEEeccCCEEE-ECCCCcccCCCccCccccCCCCC
Confidence 2233 33334333222211 124568888754 45555553443322 22222 2221111 11245
Q ss_pred EEEEEEcCC-CCEEEEEe
Q 003236 727 VHSVCWNTS-GEYLASVS 743 (837)
Q Consensus 727 V~sl~~spd-g~~Lasgs 743 (837)
+..|.++|. ...|+++.
T Consensus 171 ~~~i~~~p~~~~~~~~~~ 188 (789)
T 1sqj_A 171 YTSVIFDPERNGTIYASA 188 (789)
T ss_dssp EEEEEECTTSTTCEEEEE
T ss_pred eEEEEECCCCCCEEEEEE
Confidence 888999884 34454444
|
| >3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=87.71 E-value=34 Score=36.95 Aligned_cols=234 Identities=10% Similarity=0.057 Sum_probs=121.2
Q ss_pred eEEEEEcCCCCEEEEEECCCcEEEEeCCC-----------CeEEEEecc-CCCCeEEEEEcCCCCEEEEEeCCCeEEEEE
Q 003236 558 VESCHFSPDGKLLATGGHDKKAVLWCTES-----------FTVKSTLEE-HTQWITDVRFSPSLSRLATSSADRTVRVWD 625 (837)
Q Consensus 558 V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t-----------~~~~~~l~~-h~~~I~~l~fspdg~~Latgs~Dg~I~IWD 625 (837)
|..|+.. ....+.-..||.|+.|-... ......+.. ....+..++++......+.-..||.|+.|-
T Consensus 55 i~~i~~G--~~~~~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~~~~v~i~~G~~h~~al~~~G~v~~wG 132 (389)
T 3kci_A 55 PVQLIGG--EQTLFAVTADGKLYATGYGAGGRLGIGGTESVSTPTLLESIQHVFIKKVAVNSGGKHCLALSSEGEVYSWG 132 (389)
T ss_dssp EEEEEEE--TTEEEEEETTSCEEEEECCGGGTTSSSSSCCEEEEEECGGGTTSCEEEEEECTTCSEEEEEETTSCEEEEE
T ss_pred eEEEEeC--CCeEEEEcCCCcEEEEECCCCCCCCCCCcCCccCCEEcccccCCceeEEEECcCCCeEEEEcCCCCEEEEe
Confidence 4455443 33455556788888885321 111222222 223455566766666777778899999996
Q ss_pred cCCCC---------c-eeEEeec-cccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCC---------eee--eEEec--
Q 003236 626 TENPD---------Y-SLRTFTG-HSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNG---------SCA--GVFKC-- 681 (837)
Q Consensus 626 l~~~~---------~-~~~~~~~-h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~---------~~i--~~~~~-- 681 (837)
..... . ....+.. ....|..|+... ...+.-..+|.|+.|-.... ... ..+..
T Consensus 133 ~n~~GqLG~g~~~~~~~p~~v~~l~~~~i~~va~G~---~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~p~~v~~~~ 209 (389)
T 3kci_A 133 EAEDGKLGHGNRSPCDRPRVIESLRGIEVVDVAAGG---AHSACVTAAGDLYTWGKGRYGRLGHSDSEDQLKPKLVEALQ 209 (389)
T ss_dssp CCGGGTTCSSSCCCEEEEEECGGGTTSCEEEEEECS---SEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGT
T ss_pred CCCCCcCCCCCCccCcCCeEecccCCCeEEEEEeCc---CeEEEEeCCCeEEEeCCCCCCCcCCCCCcccccceEecccC
Confidence 53211 0 0111111 122566666543 23334556899999975431 011 11111
Q ss_pred CCCeeEEEEecCCCEEEEEEcCCeEEEEECCC----------C-eEEEEEcC-CCCCEEEEEEcCCCCEEEEEeCCeEEE
Q 003236 682 QSGATQMRFQPRLGRILAAAIENYISILDVET----------Q-VCRLKLQG-HKNQVHSVCWNTSGEYLASVSDELVRV 749 (837)
Q Consensus 682 ~~~i~sl~~sp~g~~llags~dg~I~iwDl~s----------~-~~~~~l~~-h~~~V~sl~~spdg~~LasgsDg~I~I 749 (837)
...+..++......+.++...++.|+.|-... . .....+.. ....|..|+... ...++...||.|+.
T Consensus 210 ~~~v~~ia~G~g~~~t~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~v~~v~~G~-~hs~alt~~G~v~~ 288 (389)
T 3kci_A 210 GHRVVDIACGSGDAQTLCLTDDDTVWSWGDGDYGKLGRGGSDGCKVPMKIDSLTGLGVVKVECGS-QFSVALTKSGAVYT 288 (389)
T ss_dssp TSCEEEEEECCSSCEEEEEETTTEEEEEECCGGGTTSSSSCCCEEEEEECGGGTTSCEEEEEEET-TEEEEEETTSCEEE
T ss_pred CCeEEEEEEcCCCcEEEEEccCCEEEEEeCCCCCCCCCCCCCCccccEEecccCCCcEEEEeCCC-CEEEEEeCCCeEEE
Confidence 23455555544346777888899999996432 1 11122222 122466665532 22344445899999
Q ss_pred EEcCCCC------Ccee--EEEee-cCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCC
Q 003236 750 WSIGSGS------KGEC--IHELS-CTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTE 799 (837)
Q Consensus 750 wDl~s~~------~~~~--i~~~~-~~~~~I~sv~fspdg~~L~sgs~dg~I~IwDl~s 799 (837)
|-..... .... ...+. .....|..++. ...+.++...++.|+.|-...
T Consensus 289 wG~n~~GqLG~g~~~~~~~P~~v~~l~~~~v~~ia~--G~~h~~al~~~G~v~~wG~n~ 345 (389)
T 3kci_A 289 WGKGDYHRLGHGSDDHVRRPRQVQGLQGKKVIAIAT--GSLHCVCCTEDGEVYTWGDND 345 (389)
T ss_dssp EECCGGGTTCSSSCCCEEEEEECGGGTTCCEEEEEE--CSSEEEEEETTCCEEEEECCT
T ss_pred EeCCCCCCCCCCCCccccCCeEeccCCCCCEEEEEe--ccCeEEEECCCCCEEEeeCCC
Confidence 9764310 0011 11111 12234555544 344667778899999997643
|
| >3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=87.55 E-value=28 Score=35.89 Aligned_cols=194 Identities=11% Similarity=0.020 Sum_probs=106.7
Q ss_pred CCeEEEEEcCCCCEEEEEECCCcEEEE---eCCCCeEEEEeccCCCCeEEEEEcC-CCCEEEEEeCCCeEEEEEcCCCC-
Q 003236 556 SKVESCHFSPDGKLLATGGHDKKAVLW---CTESFTVKSTLEEHTQWITDVRFSP-SLSRLATSSADRTVRVWDTENPD- 630 (837)
Q Consensus 556 ~~V~sl~fSpdg~~Lasgs~Dg~I~VW---d~~t~~~~~~l~~h~~~I~~l~fsp-dg~~Latgs~Dg~I~IWDl~~~~- 630 (837)
+.|.++.......+|+.-+.+|.++-- ++........+. ..+.|..+.... +..++++.+.+|.|+...+.+-.
T Consensus 24 D~~~~~~~~~t~~~ll~fT~~G~v~~~~~~~lp~~~~~~ll~-~~e~i~~v~~~~~~~~~~v~~T~~G~iKr~~l~~~~~ 102 (276)
T 3no0_A 24 APVVNILRVPFTEGLFLVSNRGRVYWIAGSQALQGSKVSLKS-REEKIVGAFIREKFGNRLLLATKKGYVKKIPLAEFEY 102 (276)
T ss_dssp CCEEEEEEEETTSCEEEEETTSEEEEECSHHHHTSEECCCSS-TTCCEEEEEEGGGSCSEEEEEETTSEEEEEEGGGTTT
T ss_pred CeEEEEEEECCCCEEEEEcCCCeEEEEEhhhCccCcccccCC-CCCEEEEEECCcCCCCEEEEEeCCCEEEEEEHHHhhh
Confidence 445555544445566666677876643 333222111133 345666664421 46789999999999999876421
Q ss_pred ----ceeEEeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCC---------CeeeeEEecCCCeeEEEEecCCCEE
Q 003236 631 ----YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN---------GSCAGVFKCQSGATQMRFQPRLGRI 697 (837)
Q Consensus 631 ----~~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t---------~~~i~~~~~~~~i~sl~~sp~g~~l 697 (837)
.....+. ..+.+..+........++ ..+..|.++.++... |.....+.....+..+....++..+
T Consensus 103 ~~~G~~~i~lk-egD~l~~~~~~~~~~~il-l~T~~G~~~r~~~~eip~~gR~a~Gv~~i~L~~~d~vv~~~~~~~~~~l 180 (276)
T 3no0_A 103 KAQGMPIIKLT-EGDEVVSIASSVDETHIL-LFTKKGRVARFSVREVPPSTPGARGVQGIKLEKNDETSGLRIWNGEPYL 180 (276)
T ss_dssp CSTTEECSCCC-TTCCEEEEEECCSSCEEE-EEETTSEEEEEEGGGSCBCCTTCCCEECCCCCTTCCEEEEEEESSCSEE
T ss_pred hcCCeEEEecC-CCCEEEEEEEeCCCCEEE-EEECCCEEEEEEhhhCCCcCCCCCCEEEEccCCCCEEEEEEEeCCCCEE
Confidence 1111222 234555555554444444 556688888776532 2222223334567766666667789
Q ss_pred EEEEcCCeEEEEECCC-------CeEEEEEcCCCCCEEEEEE-cCCCCEEEEEeCCeEEE--EEcC
Q 003236 698 LAAAIENYISILDVET-------QVCRLKLQGHKNQVHSVCW-NTSGEYLASVSDELVRV--WSIG 753 (837)
Q Consensus 698 lags~dg~I~iwDl~s-------~~~~~~l~~h~~~V~sl~~-spdg~~LasgsDg~I~I--wDl~ 753 (837)
+..+..|.++...+.. ++-+..+ ...+.+..+.. ..+..+++...+|.+.. ++..
T Consensus 181 l~~T~~G~~kr~~~~e~~~~~R~gkGv~~i-~~~~~lv~~~~~~~~~~i~~~t~~G~~ir~~~~~~ 245 (276)
T 3no0_A 181 LVITAKGRVKKISHEEIPKTNRGVKGTEVS-GTKDTLVDLIPIKEEVELLITTKNGKAFYDKINQK 245 (276)
T ss_dssp EEEETTSCEEEEEGGGSCCCCTTCCCEECC-CSSSCEEEEEEESSEEEEEEEETTSCEEEEEEEGG
T ss_pred EEEeCCCcEEEeEHHHcccCCCCCcceEEE-cCCCcEEEEEEeCCCCEEEEEcCCCeEEEeeeCHH
Confidence 9999999988887642 1222222 22344544433 33334444444776666 6654
|
| >1wp5_A Topoisomerase IV; broken beta-propeller, hairpin-invaded beta-propeller, six- bladed beta-propeller; 1.79A {Geobacillus stearothermophilus} SCOP: b.68.10.1 | Back alignment and structure |
|---|
Probab=85.15 E-value=42 Score=35.50 Aligned_cols=225 Identities=12% Similarity=0.109 Sum_probs=116.8
Q ss_pred CCCCEEEEEeCCCeEEEEEcCCC---CceeEEeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEEC---CC------Ce
Q 003236 607 PSLSRLATSSADRTVRVWDTENP---DYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSI---NN------GS 674 (837)
Q Consensus 607 pdg~~Latgs~Dg~I~IWDl~~~---~~~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl---~t------~~ 674 (837)
|+..++++.+.+|.|+--.+..- ......+... +.+..+........++ ..+..|.++-+.. .. |.
T Consensus 3 ~~e~~~v~lT~~G~IKr~~~~~~~~~~~~~~~lke~-D~l~~~~~~~t~d~ll-~fT~~Gr~~~~~~~elp~~~r~a~G~ 80 (323)
T 1wp5_A 3 ASEDVIVTVTKDGYVKRTSLRSYAASNGQDFAMKDT-DRLLAMLEMNTKDVLL-LFTNKGNYLYCPVHELPDIRWKDLGQ 80 (323)
T ss_dssp SCCEEEEEEETTCEEEEEEHHHHHHTTTCCCCCCTT-CCEEEEEEEETTSEEE-EEETTSEEEEEEGGGSCBCCTTSCCE
T ss_pred cCCcEEEEEeCCCEEEEeEHHHhhhcCccccccCCC-CEEEEEEEECCCCEEE-EEECCCEEEEEEHHHCcCCCCCCCCc
Confidence 56678889999999987765411 1101122222 3343433333334455 3444777665544 21 22
Q ss_pred eee---EEecCCCeeEEEEecC---CCEEEEEEcCCeEEEEECCC--------CeEEEEEcCCCCCEEEEEEcCCC-CEE
Q 003236 675 CAG---VFKCQSGATQMRFQPR---LGRILAAAIENYISILDVET--------QVCRLKLQGHKNQVHSVCWNTSG-EYL 739 (837)
Q Consensus 675 ~i~---~~~~~~~i~sl~~sp~---g~~llags~dg~I~iwDl~s--------~~~~~~l~~h~~~V~sl~~spdg-~~L 739 (837)
.+. .+.....|..+...++ +.+++.++..|.++...+.. +.....+... +.+..+...... .++
T Consensus 81 ~i~~~i~L~~~e~Iv~~~~~~~~~~~~~ll~~T~~G~iKrt~l~e~~~~~r~~G~~ai~l~e~-d~lv~~~~~~~~~~i~ 159 (323)
T 1wp5_A 81 HIANIIPIDRDEEIIKAIPINDFELNGYFLFVTRNGMVKKTELKHYKAQRYSKPLTGINLKND-DQVVDVHLTDGMNELF 159 (323)
T ss_dssp EGGGTSCCCTTCCEEEEEEESCTTSSCEEEEEETTSEEEEEEGGGGCCSCCSSCEECSCCCTT-CCEEEEEEECSCSEEE
T ss_pred ChhhccCCCCCCEEEEEEEecccCCCceEEEEeCCCeEEEeEHHHhhhccccCceEEEEeCCC-CEEEEEEEeCCCCEEE
Confidence 111 1222344665544332 56899999999999987642 2222233333 455555554444 444
Q ss_pred EEEeCCeEEEEEcCCC----CCceeEEEeec-CCCceEEEEEeCCCC-EEEEEEcCCeEEEEECCCCc--------EEE-
Q 003236 740 ASVSDELVRVWSIGSG----SKGECIHELSC-TGNKFHSCVFHPTFP-SLLVIGCYETLELWNMTENK--------TLT- 804 (837)
Q Consensus 740 asgsDg~I~IwDl~s~----~~~~~i~~~~~-~~~~I~sv~fspdg~-~L~sgs~dg~I~IwDl~s~~--------~~~- 804 (837)
+.+.+|.+..+....- ....-+..+.- .+..|.++...+++. .|++.+..|..+..++..-. ...
T Consensus 160 l~T~~G~~irf~~~ev~~~gR~a~GV~~i~L~~~d~Vv~~~~~~~~~~~ll~vt~~G~gKr~~~~e~~~~~Rg~kGv~~~ 239 (323)
T 1wp5_A 160 LVTHNGYALWFDESEVSIVGVRAAGVKGMNLKEGDYIVSGQLITSKDESIVVATQRGAVKKMKLTEFEKATRAKRGVVIL 239 (323)
T ss_dssp EEETTSEEEEEEGGGSCBCCSSCCCEECCCCCTTCCEEEEEEECCTTCEEEEEETTSEEEEEEGGGSCCCCTTSCCEECS
T ss_pred EEeCCCcEEEEEHHHCcccCCCCcCEEEEEeCCCCEEEEEEEEcCCCcEEEEEECCCceEEEEHHHccccCCCCCCEECe
Confidence 4455898888876431 11111222221 234566665544455 79999999988877764421 111
Q ss_pred --eccCCCCeeEEEEeCCCCEEEEEECCCcEE
Q 003236 805 --LSAHDKLVSSLAASTVNGMVASASHDKCVK 834 (837)
Q Consensus 805 --l~~h~~~V~sla~spdg~~LaSgs~DG~I~ 834 (837)
+......+..+....++..|+..+..|.+.
T Consensus 240 ~~~~~~~~~l~~~~~v~~~~~i~~it~~g~~i 271 (323)
T 1wp5_A 240 RELKANPHRISGFVVAQDSDTIYLQTEKSFIE 271 (323)
T ss_dssp CCCSSSCCCEEEEEEECTTCEEEEEETTSCEE
T ss_pred eecCCCCceEEEEEEeCCCCeEEEEeCCCeEE
Confidence 112222455443333344555666666653
|
| >4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A | Back alignment and structure |
|---|
Probab=83.58 E-value=54 Score=35.56 Aligned_cols=267 Identities=9% Similarity=0.064 Sum_probs=132.0
Q ss_pred CCeEEEEEcCCCCEEEEEECCCcEEEEeCCC-----------CeEEEEecc-CCCCeEEEEEcCCCCEEEEEeCC-CeEE
Q 003236 556 SKVESCHFSPDGKLLATGGHDKKAVLWCTES-----------FTVKSTLEE-HTQWITDVRFSPSLSRLATSSAD-RTVR 622 (837)
Q Consensus 556 ~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t-----------~~~~~~l~~-h~~~I~~l~fspdg~~Latgs~D-g~I~ 622 (837)
..|..|+.-. ...+.-..||.|+.|-... ......+.. ....|..|+...+ +.+....| +.|+
T Consensus 16 ~~v~~ia~G~--~hs~al~~~g~v~~wG~n~~GqLG~g~~~~~~~P~~v~~l~~~~i~~va~G~~--ht~al~~~gg~v~ 91 (406)
T 4d9s_A 16 RKVLIISAGA--SHSVALLSGDIVCSWGRGEDGQLGHGDAEDRPSPTQLSALDGHQIVSVTCGAD--HTVAYSQSGMEVY 91 (406)
T ss_dssp CCEEEEEECS--SEEEEEETTTEEEEEECCTTSTTCSSSCCCEEEEEECGGGTTSCEEEEEECSS--EEEEEETTTTEEE
T ss_pred cceEEEecCC--CeEEEEEeCCEEEEEeCCCCCCCCCCCcccCcCCEEecccCCCCEEEEEeCcc--eEEEEECCCCEEE
Confidence 4566666543 3444556788888884322 111222221 2235777776533 33333445 5999
Q ss_pred EEEcCCCC--------cee--EEeec-cccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCe---------ee--eEEe
Q 003236 623 VWDTENPD--------YSL--RTFTG-HSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS---------CA--GVFK 680 (837)
Q Consensus 623 IWDl~~~~--------~~~--~~~~~-h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~---------~i--~~~~ 680 (837)
.|-..... ... ..+.. ....|..|+... ...+.-..+|.|+.|-....- .. ..+.
T Consensus 92 ~wG~n~~GqLG~g~~~~~~~p~~v~~l~~~~i~~ia~G~---~h~~alt~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~ 168 (406)
T 4d9s_A 92 SWGWGDFGRLGHGNSSDLFTPLPIKALHGIRIKQIACGD---SHCLAVTMEGEVQSWGRNQNGQLGLGDTEDSLVPQKIQ 168 (406)
T ss_dssp EEECCGGGTTCSSSCCCEEEEEECGGGTTCCEEEEEECS---SEEEEEETTSCEEEEECCTTSTTCSSSCCCEEEEEECG
T ss_pred EEcCCCCcCCCCCCCCccccceEecccCCCCEEEEEECh---hheEEEcCCCcEEEeCCCCCccCCCCCCCCcccceEec
Confidence 99643210 000 11111 223577776643 233445678999999764311 11 1111
Q ss_pred c--CCCeeEEEEecCCCEEEEEEcCCeEEEEECCCC----------eE-EEEEcC-CCCCEEEEEEcCCCCEEEEEeCCe
Q 003236 681 C--QSGATQMRFQPRLGRILAAAIENYISILDVETQ----------VC-RLKLQG-HKNQVHSVCWNTSGEYLASVSDEL 746 (837)
Q Consensus 681 ~--~~~i~sl~~sp~g~~llags~dg~I~iwDl~s~----------~~-~~~l~~-h~~~V~sl~~spdg~~LasgsDg~ 746 (837)
. ...|..++ ....+.++...+|.|+.|-.... .. ...+.. ....|..|+... ...++...+|.
T Consensus 169 ~~~~~~i~~va--~G~~hs~alt~~G~v~~wG~n~~GqlG~g~~~~~~~p~~v~~~~~~~i~~va~G~-~ht~~l~~~G~ 245 (406)
T 4d9s_A 169 AFEGIRIKMVA--AGAEHTAAVTEDGDLYGWGWGRYGNLGLGDRTDRLVPERVTSTGGEKMSMVACGW-RHTISVSYSGA 245 (406)
T ss_dssp GGTTCCEEEEE--ECSSEEEEEETTSCEEEEECCTTSTTCSSSSCCEEEEEECCCSTTCCEEEEEECS-SEEEEEETTCC
T ss_pred ccCCCcEEEEe--cCCCeEEEEeCCCCEEEeeCCCCCCCCCCCCCCcCccEEecccCCceEEEEEECC-CcEEEEcCCCC
Confidence 1 12344444 34467777888999999964321 11 111111 224566665432 22344445889
Q ss_pred EEEEEcCCCCC------c-eeE-EEee-cCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCC-c-----------EEEe
Q 003236 747 VRVWSIGSGSK------G-ECI-HELS-CTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTEN-K-----------TLTL 805 (837)
Q Consensus 747 I~IwDl~s~~~------~-~~i-~~~~-~~~~~I~sv~fspdg~~L~sgs~dg~I~IwDl~s~-~-----------~~~l 805 (837)
|+.|-...... . ... ..+. .....|..++. ...+.++...++.|+.|-.... . +..+
T Consensus 246 v~~wG~n~~GqlG~g~~~~~~~p~~v~~~~~~~v~~i~~--G~~hs~alt~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v 323 (406)
T 4d9s_A 246 LYTYGWSKYGQLGHGDLEDHLIPHKLEALSNSFISQISG--GWRHTMALTSDGKLYGWGWNKFGQVGVGNNLDQCSPVQV 323 (406)
T ss_dssp EEEEECCTTSTTCSSSCCCEEEEEECGGGTTSCEEEEEE--CSSEEEEEETTSCEEEEECCTTSTTCSSSSSCEEEEEEE
T ss_pred EEEeeCCCCCCCCCCCCcCccccEEecccCCCCEEEEEe--cCCEEEEEcCCCeEEEeeCCCCCCCCCCCCCCCccCEEE
Confidence 99997543211 0 111 1111 11233544443 3446677778889999964321 0 1111
Q ss_pred c-cCCCCeeEEEEeCCCCEEEEEECCCcEEEe
Q 003236 806 S-AHDKLVSSLAASTVNGMVASASHDKCVKIW 836 (837)
Q Consensus 806 ~-~h~~~V~sla~spdg~~LaSgs~DG~I~IW 836 (837)
. .....|..|+.. ..+.+.-..||.|+.|
T Consensus 324 ~~~~~~~v~~va~G--~~hs~alt~~G~v~~w 353 (406)
T 4d9s_A 324 RFPDDQKVVQVSCG--WRHTLAVTERNNVFAW 353 (406)
T ss_dssp CCGGGCCEEEEEEC--SSEEEEEETTSCEEEE
T ss_pred eccCCCcEEEEEeC--CCeEEEEeCCCCEEEe
Confidence 1 123356666543 3344555678888887
|
| >1uuj_A Platelet-activating factor acetylhydrolase IB ALP subunit; mitosis, neuroge cytoskeleton, cell division, microtubule; 1.75A {Mus musculus} SCOP: a.221.1.1 | Back alignment and structure |
|---|
Probab=83.03 E-value=0.52 Score=39.87 Aligned_cols=32 Identities=22% Similarity=0.347 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHhcCCCCC
Q 003236 10 KMLDVYIYDYLLKRKLHASAKAFQTEGKVSTD 41 (837)
Q Consensus 10 ~~l~~yiydyl~k~~~~~~A~~~~~e~~~~~~ 41 (837)
+=||.-|++||..+|+.+++.+|.+|.+++.+
T Consensus 11 eEL~kaI~~YL~~~~~~~~~~alr~e~~~~~~ 42 (88)
T 1uuj_A 11 DELNRAIADYLRSNGYEEAYSVFKKEAELDMN 42 (88)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHTTCCCC
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHhcCCCC
Confidence 35799999999999999999999999988754
|
| >2xtc_A F-box-like/WD repeat-containing protein TBL1X; transcription; 2.22A {Homo sapiens} PDB: 2xte_A 2xtd_A | Back alignment and structure |
|---|
Probab=82.56 E-value=0.95 Score=38.50 Aligned_cols=32 Identities=25% Similarity=0.424 Sum_probs=28.9
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHhcCCCCCC
Q 003236 11 MLDVYIYDYLLKRKLHASAKAFQTEGKVSTDP 42 (837)
Q Consensus 11 ~l~~yiydyl~k~~~~~~A~~~~~e~~~~~~~ 42 (837)
-+|-.||-||..+|+..+|-+|-+|.++...+
T Consensus 7 evN~LI~RYLqEsGf~hsAf~f~~Es~i~~~~ 38 (90)
T 2xtc_A 7 EVNFLVYRYLQESGFSHSAFTFGIESHISQSN 38 (90)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHTTGGGSC
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHhcCCccc
Confidence 47899999999999999999999999887543
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 837 | ||||
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 4e-32 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 4e-19 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 9e-19 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 1e-30 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 3e-28 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 3e-19 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 6e-19 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 8e-16 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 9e-04 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 5e-27 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 1e-15 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 2e-15 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 9e-15 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 4e-13 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 2e-09 | |
| d2ovrb2 | 342 | b.69.4.1 (B:2365-2706) F-box/WD repeat-containing | 8e-22 | |
| d2ovrb2 | 342 | b.69.4.1 (B:2365-2706) F-box/WD repeat-containing | 5e-15 | |
| d2ovrb2 | 342 | b.69.4.1 (B:2365-2706) F-box/WD repeat-containing | 4e-08 | |
| d2ovrb2 | 342 | b.69.4.1 (B:2365-2706) F-box/WD repeat-containing | 0.001 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 2e-21 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 3e-17 | |
| d1k8kc_ | 371 | b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 | 2e-20 | |
| d1k8kc_ | 371 | b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 | 3e-16 | |
| d1k8kc_ | 371 | b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 | 1e-13 | |
| d1k8kc_ | 371 | b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 | 5e-09 | |
| d1k8kc_ | 371 | b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 | 3e-05 | |
| d1k8kc_ | 371 | b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 | 3e-05 | |
| d1p22a2 | 293 | b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be | 6e-20 | |
| d1p22a2 | 293 | b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be | 1e-08 | |
| d1p22a2 | 293 | b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be | 6e-07 | |
| d1nexb2 | 355 | b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker' | 3e-18 | |
| d1nexb2 | 355 | b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker' | 5e-08 | |
| d1nexb2 | 355 | b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker' | 5e-08 | |
| d1nexb2 | 355 | b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker' | 8e-08 | |
| d1nexb2 | 355 | b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker' | 7e-06 | |
| d1nexb2 | 355 | b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker' | 8e-05 | |
| d1pgua1 | 325 | b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba | 3e-18 | |
| d1pgua1 | 325 | b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba | 4e-07 | |
| d1nr0a2 | 299 | b.69.4.1 (A:313-611) Actin interacting protein 1 { | 2e-17 | |
| d1nr0a2 | 299 | b.69.4.1 (A:313-611) Actin interacting protein 1 { | 2e-06 | |
| d1nr0a2 | 299 | b.69.4.1 (A:313-611) Actin interacting protein 1 { | 2e-04 | |
| d1yfqa_ | 342 | b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake | 2e-17 | |
| d1yfqa_ | 342 | b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake | 5e-07 | |
| d1yfqa_ | 342 | b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake | 0.003 | |
| d1nr0a1 | 311 | b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne | 5e-17 | |
| d1nr0a1 | 311 | b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne | 3e-10 | |
| d1jmxb_ | 346 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 2e-15 | |
| d1jmxb_ | 346 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 6e-07 | |
| d1jmxb_ | 346 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 7e-05 | |
| d1pgua2 | 287 | b.69.4.1 (A:327-613) Actin interacting protein 1 { | 2e-15 | |
| d1pgua2 | 287 | b.69.4.1 (A:327-613) Actin interacting protein 1 { | 4e-09 | |
| d1pgua2 | 287 | b.69.4.1 (A:327-613) Actin interacting protein 1 { | 2e-05 | |
| d1pgua2 | 287 | b.69.4.1 (A:327-613) Actin interacting protein 1 { | 0.002 | |
| d1k32a3 | 360 | b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar | 1e-14 | |
| d1k32a3 | 360 | b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar | 2e-13 | |
| d1k32a3 | 360 | b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar | 1e-10 | |
| d1k32a3 | 360 | b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar | 1e-04 | |
| d1sq9a_ | 393 | b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake | 2e-12 | |
| d1sq9a_ | 393 | b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake | 1e-11 | |
| d1sq9a_ | 393 | b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake | 1e-07 | |
| d1sq9a_ | 393 | b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake | 3e-06 | |
| d1pbyb_ | 337 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 2e-12 | |
| d1pbyb_ | 337 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 1e-07 | |
| d1pbyb_ | 337 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 0.004 | |
| d1qksa2 | 432 | b.70.2.1 (A:136-567) C-terminal (heme d1) domain o | 2e-10 | |
| d1qksa2 | 432 | b.70.2.1 (A:136-567) C-terminal (heme d1) domain o | 1e-08 | |
| d2bbkh_ | 355 | b.69.2.1 (H:) Methylamine dehydrogenase, H-chain { | 9e-09 | |
| d2bbkh_ | 355 | b.69.2.1 (H:) Methylamine dehydrogenase, H-chain { | 4e-07 | |
| d1l0qa2 | 301 | b.69.2.3 (A:1-301) Surface layer protein {Archaeon | 5e-07 | |
| d1l0qa2 | 301 | b.69.2.3 (A:1-301) Surface layer protein {Archaeon | 0.001 | |
| d1l0qa2 | 301 | b.69.2.3 (A:1-301) Surface layer protein {Archaeon | 0.002 | |
| d1mdah_ | 368 | b.69.2.1 (H:) Methylamine dehydrogenase, H-chain { | 6e-06 | |
| d1hzua2 | 426 | b.70.2.1 (A:118-543) C-terminal (heme d1) domain o | 1e-05 | |
| d1hzua2 | 426 | b.70.2.1 (A:118-543) C-terminal (heme d1) domain o | 2e-04 | |
| d1hzua2 | 426 | b.70.2.1 (A:118-543) C-terminal (heme d1) domain o | 0.001 | |
| d1hzua2 | 426 | b.70.2.1 (A:118-543) C-terminal (heme d1) domain o | 0.002 | |
| d1ri6a_ | 333 | b.69.11.1 (A:) Putative isomerase YbhE {Escherichi | 8e-04 |
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 126 bits (315), Expect = 4e-32
Identities = 50/286 (17%), Positives = 105/286 (36%), Gaps = 5/286 (1%)
Query: 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLAT 614
+K+ + H+ D +LL + D K ++W + + + + W+ ++PS + +A
Sbjct: 55 LAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVAC 114
Query: 615 SSADRTVRVWDTENPDYS---LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSIN 671
D +++ + + + R GH+ + F + + S D + +
Sbjct: 115 GGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDT-TCALWDIET 173
Query: 672 NGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVC 731
+ P ++ A + + DV +CR GH++ ++++C
Sbjct: 174 GQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAIC 233
Query: 732 WNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYET 791
+ +G A+ SD+ + + S F + LL
Sbjct: 234 FFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFN 293
Query: 792 LELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIW 836
+W+ + L+ HD VS L + VA+ S D +KIW
Sbjct: 294 CNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIW 339
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 87.5 bits (215), Expect = 4e-19
Identities = 40/196 (20%), Positives = 64/196 (32%), Gaps = 44/196 (22%)
Query: 558 VESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA 617
V S +PD +L +G D A LW + T H I + F P+ + AT S
Sbjct: 187 VMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSD 246
Query: 618 DRTVRV-WDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCA 676
D T R+ + + + + S+ F S LL + ++ W A
Sbjct: 247 DATCRLFDLRADQELMTYSHDNIICGITSVSFSKS-GRLLLAGYDDFNCNVWDALKADRA 305
Query: 677 GVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSG 736
GV L GH N+V + G
Sbjct: 306 GV-----------------------------------------LAGHDNRVSCLGVTDDG 324
Query: 737 EYLASVS-DELVRVWS 751
+A+ S D +++W+
Sbjct: 325 MAVATGSWDSFLKIWN 340
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 86.3 bits (212), Expect = 9e-19
Identities = 29/128 (22%), Positives = 40/128 (31%), Gaps = 4/128 (3%)
Query: 544 TFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQW--IT 601
Q S + + F P+G ATG D L+ + T IT
Sbjct: 215 EGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGIT 274
Query: 602 DVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDN 661
V FS S L D VWD D GH V L + +
Sbjct: 275 SVSFSKSGRLLLAGYDDFNCNVWDALKAD-RAGVLAGHDNRVSCLGVTDD-GMAVATGSW 332
Query: 662 NSEIRYWS 669
+S ++ W+
Sbjct: 333 DSFLKIWN 340
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 121 bits (303), Expect = 1e-30
Identities = 66/306 (21%), Positives = 121/306 (39%), Gaps = 28/306 (9%)
Query: 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLAT 614
S V F P ++ + D +W E+ + TL+ HT + D+ F S LA+
Sbjct: 17 RSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLAS 76
Query: 615 SSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS 674
SAD T+++WD + + D + S + I+ W + G
Sbjct: 77 CSADMTIKLWDFQGFECIRTMHGHDHNVSS--VSIMPNGDHIVSASRDKTIKMWEVQTGY 134
Query: 675 CAGVFKCQSGATQMRFQPRLGRILAAA-IENYISILDVETQVCRLKLQGHKNQVHSVCWN 733
C F +M + G ++A+ + + + V T+ C+ +L+ H++ V + W
Sbjct: 135 CVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWA 194
Query: 734 TSGEYLASV---------------------SDELVRVWSIGSGSKGECIHELSCTGNKFH 772
Y + D+ +++W + S G C+ L N
Sbjct: 195 PESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDV---STGMCLMTLVGHDNWVR 251
Query: 773 SCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDK 831
+FH +L +TL +W+ + + TL+AH+ V+SL V + S D+
Sbjct: 252 GVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQ 311
Query: 832 CVKIWK 837
VK+W+
Sbjct: 312 TVKVWE 317
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 114 bits (284), Expect = 3e-28
Identities = 62/270 (22%), Positives = 108/270 (40%), Gaps = 26/270 (9%)
Query: 590 KSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFH 649
K L H +T V F P S + ++S D T++VWD E D+ RT GH+ +V + F
Sbjct: 10 KYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDF-ERTLKGHTDSVQDISFD 68
Query: 650 PSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISIL 709
S + L + + + + + + P I++A+ + I +
Sbjct: 69 HSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMW 128
Query: 710 DVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTG 768
+V+T C GH+ V V N G +AS S D+ VRVW + + EC EL
Sbjct: 129 EVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVAT---KECKAELREHR 185
Query: 769 NKFHSCVFHPTFPSLLVIGCY--------------------ETLELWNMTENKTL-TLSA 807
+ + P + +T+++W+++ L TL
Sbjct: 186 HVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVG 245
Query: 808 HDKLVSSLAASTVNGMVASASHDKCVKIWK 837
HD V + + + S + DK +++W
Sbjct: 246 HDNWVRGVLFHSGGKFILSCADDKTLRVWD 275
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 87.5 bits (215), Expect = 3e-19
Identities = 29/126 (23%), Positives = 51/126 (40%), Gaps = 2/126 (1%)
Query: 543 FTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITD 602
+ + + E+ G L +G DK +W + TL H W+
Sbjct: 193 WAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRG 252
Query: 603 VRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN 662
V F + + + D+T+RVWD +N ++T H V SLDFH + + + +
Sbjct: 253 VLFHSGGKFILSCADDKTLRVWDYKNKR-CMKTLNAHEHFVTSLDFHKT-APYVVTGSVD 310
Query: 663 SEIRYW 668
++ W
Sbjct: 311 QTVKVW 316
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 86.3 bits (212), Expect = 6e-19
Identities = 38/209 (18%), Positives = 76/209 (36%), Gaps = 26/209 (12%)
Query: 544 TFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDV 603
T + V + DG L+A+ +D+ +W + K+ L EH + +
Sbjct: 132 TGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECI 191
Query: 604 RFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNS 663
++P S + S A + + + L S +
Sbjct: 192 SWAPESSYSSISEATGSETKKSGKPGPF------------------------LLSGSRDK 227
Query: 664 EIRYWSINNGSCAGVFKCQSGA-TQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQG 722
I+ W ++ G C + F IL+ A + + + D + + C L
Sbjct: 228 TIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNA 287
Query: 723 HKNQVHSVCWNTSGEYLASVS-DELVRVW 750
H++ V S+ ++ + Y+ + S D+ V+VW
Sbjct: 288 HEHFVTSLDFHKTAPYVVTGSVDQTVKVW 316
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 77.1 bits (188), Expect = 8e-16
Identities = 20/82 (24%), Positives = 35/82 (42%)
Query: 544 TFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDV 603
T + + V F GK + + DK +W ++ TL H ++T +
Sbjct: 236 TGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSL 295
Query: 604 RFSPSLSRLATSSADRTVRVWD 625
F + + T S D+TV+VW+
Sbjct: 296 DFHKTAPYVVTGSVDQTVKVWE 317
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 39.7 bits (91), Expect = 9e-04
Identities = 12/44 (27%), Positives = 20/44 (45%)
Query: 793 ELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIW 836
+ W + LS H V+ + V ++ SAS D +K+W
Sbjct: 1 KEWIPRPPEKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVW 44
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 112 bits (279), Expect = 5e-27
Identities = 75/326 (23%), Positives = 123/326 (37%), Gaps = 46/326 (14%)
Query: 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEE------------------H 596
TS V FS DG+ LATG +K ++ ++ + L +
Sbjct: 62 TSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSS 120
Query: 597 TQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLL 656
+I V FSP LAT + DR +R+WD EN + + D L
Sbjct: 121 DLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKI--VMILQGHEQDIYSLDYFPSGDKL 178
Query: 657 CSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAA-IENYISILDVETQV 715
S + +R W + G C+ + G T + P G+ +AA ++ + + D ET
Sbjct: 179 VSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGF 238
Query: 716 CRLKLQ-------GHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSK---------G 758
+L GHK+ V+SV + G+ + S S D V++W++ + + G
Sbjct: 239 LVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSG 298
Query: 759 ECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNM-TENKTLTLSAHDKLVSSLAA 817
C + S +L + W+ + N L L H V S+A
Sbjct: 299 TCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAV 358
Query: 818 STV------NGMVASASHDKCVKIWK 837
+ + A+ S D +IWK
Sbjct: 359 ANGSSLGPEYNVFATGSGDCKARIWK 384
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 77.9 bits (190), Expect = 1e-15
Identities = 28/142 (19%), Positives = 55/142 (38%), Gaps = 18/142 (12%)
Query: 546 TEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKS------------TL 593
+E + V S F+ DG+ + +G D+ LW ++ KS T
Sbjct: 245 SENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTY 304
Query: 594 EEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPS-- 651
H ++ V + + + + S DR V WD ++ + L GH +V+S+
Sbjct: 305 IGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGN-PLLMLQGHRNSVISVAVANGSS 363
Query: 652 ---KEDLLCSCDNNSEIRYWSI 670
+ ++ + + + R W
Sbjct: 364 LGPEYNVFATGSGDCKARIWKY 385
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 76.8 bits (187), Expect = 2e-15
Identities = 51/277 (18%), Positives = 100/277 (36%), Gaps = 36/277 (12%)
Query: 595 EHTQWITDVRFSPSLSRLATSSADRTVRVWDTENP-----------------DYSLRTFT 637
+HT + V+FS LAT ++T +V+ + + + +
Sbjct: 60 DHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSP 118
Query: 638 GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRI 697
+ S+ F P + L ++ + N + + + + P ++
Sbjct: 119 SSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKL 178
Query: 698 LAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGS 756
++ + + + I D+ T C L L G+Y+A+ S D VRVW +G
Sbjct: 179 VSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGF 238
Query: 757 KGECIHELSCTG----NKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL--------- 803
E + + +G + +S VF S++ +++LWN+
Sbjct: 239 LVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSG 298
Query: 804 ----TLSAHDKLVSSLAASTVNGMVASASHDKCVKIW 836
T H V S+A + + + S S D+ V W
Sbjct: 299 TCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFW 335
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 74.8 bits (182), Expect = 9e-15
Identities = 38/206 (18%), Positives = 68/206 (33%), Gaps = 45/206 (21%)
Query: 561 CHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEE-------HTQWITDVRFSPSLSRLA 613
DGK +A G D+ +W +E+ + L+ H + V F+ +
Sbjct: 211 AVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVV 270
Query: 614 TSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNG 673
+ S DR+V++W+ +N + + T +S T
Sbjct: 271 SGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIG------------------------ 306
Query: 674 SCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWN 733
+ + IL+ + + + D ++ L LQGH+N V SV
Sbjct: 307 -------HKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVA 359
Query: 734 TS------GEYLASVS-DELVRVWSI 752
A+ S D R+W
Sbjct: 360 NGSSLGPEYNVFATGSGDCKARIWKY 385
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 69.8 bits (169), Expect = 4e-13
Identities = 16/79 (20%), Positives = 29/79 (36%), Gaps = 6/79 (7%)
Query: 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDV------RFSPS 608
V S + + + + +G D+ + W +S L+ H + V P
Sbjct: 308 KDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPE 367
Query: 609 LSRLATSSADRTVRVWDTE 627
+ AT S D R+W +
Sbjct: 368 YNVFATGSGDCKARIWKYK 386
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 58.3 bits (139), Expect = 2e-09
Identities = 39/280 (13%), Positives = 75/280 (26%), Gaps = 39/280 (13%)
Query: 591 STLEEHTQWITDVRFSPSLSR---LATSSADRTVRVWDTENP---DYSLRTFTGHSTTVM 644
+ H++ I + +++ P D L H++ V
Sbjct: 7 NQRANHSKPIPPFLLDLDSQSVPDALKKQTNDYYILYNPALPREIDVELHKSLDHTSVVC 66
Query: 645 SLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGA------------------- 685
+ F E L C+ + + +++GS S A
Sbjct: 67 CVKFSNDGEYLATGCNKT--TQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYI 124
Query: 686 TQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVSDE 745
+ F P G+ LA E+ + + + + Q
Sbjct: 125 RSVCFSPD-GKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSG 183
Query: 746 LVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCY---------ETLELWN 796
V + + G + P + G ET L
Sbjct: 184 DRTVRIWDLRTGQCSLTLSIEDG--VTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVE 241
Query: 797 MTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIW 836
+++ + + H V S+ + V S S D+ VK+W
Sbjct: 242 RLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLW 281
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 95.7 bits (236), Expect = 8e-22
Identities = 58/285 (20%), Positives = 106/285 (37%), Gaps = 18/285 (6%)
Query: 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLAT 614
V +C G + +G D +W + TL HT + + ++ +
Sbjct: 16 DDHVITC-LQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDNIIISGS 74
Query: 615 SSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS 674
+ V +T ++L T + + S ++ +R W I G
Sbjct: 75 TDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRV------VSGSRDATLRVWDIETGQ 128
Query: 675 CAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNT 734
C V A + R+++ A + + + D ET+ C LQGH N+V+S+ ++
Sbjct: 129 CLHVLMGHVAAVRCVQYDG-RRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQFD- 186
Query: 735 SGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLE 793
G ++ S S D +RVW + G CIH L+ + L+ T++
Sbjct: 187 -GIHVVSGSLDTSIRVWDV---ETGNCIHTLTGHQSLTSGMELKDNI--LVSGNADSTVK 240
Query: 794 LWNMTENKTLTLSAHDKLVSS--LAASTVNGMVASASHDKCVKIW 836
+W++ + L S V ++S D VK+W
Sbjct: 241 IWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLW 285
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 74.9 bits (182), Expect = 5e-15
Identities = 39/202 (19%), Positives = 80/202 (39%), Gaps = 18/202 (8%)
Query: 561 CHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRT 620
DG+ + +G +D +W E+ T TL+ HT + ++F + + S D +
Sbjct: 141 RCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQFDGI--HVVSGSLDTS 198
Query: 621 VRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK 680
+RVWD E + + T TGH + ++ ++L S + +S ++ W I G C +
Sbjct: 199 IRVWDVETGN-CIHTLTGHQSLTSGMELKD---NILVSGNADSTVKIWDIKTGQCLQTLQ 254
Query: 681 CQSGAT--QMRFQPRLGRILAAAIENYISILDVETQVC-----RLKLQGHKNQVHSVCWN 733
+ Q ++ ++ + + + D++T L+ G V + +
Sbjct: 255 GPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRAS 314
Query: 734 TSGEYLASVSDE-----LVRVW 750
+ A S + V
Sbjct: 315 NTKLVCAVGSRNGTEETKLLVL 336
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 54.0 bits (128), Expect = 4e-08
Identities = 21/123 (17%), Positives = 42/123 (34%), Gaps = 14/123 (11%)
Query: 560 SCHFSPDGKLLATGGHDKKAVLW---CTESFTVKSTLEEHTQWITDVRFSPSLSRLATSS 616
+ +L +G D +W + +H +T ++F+ + TSS
Sbjct: 220 TSGMELKDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFV--ITSS 277
Query: 617 ADRTVRVWDTENPDYSLRTFT-----GHSTTVMSLDFHPSKEDLLCSCDNNSE---IRYW 668
D TV++WD + + +R G V + +K N +E +
Sbjct: 278 DDGTVKLWDLKTGE-FIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVL 336
Query: 669 SIN 671
+
Sbjct: 337 DFD 339
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 39.8 bits (91), Expect = 0.001
Identities = 26/202 (12%), Positives = 49/202 (24%), Gaps = 33/202 (16%)
Query: 668 WSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQV 727
W V K Q RI++ + +N + + T C L GH V
Sbjct: 1 WRRGELKSPKVLKGHDDHVITCLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGV 60
Query: 728 HSVCWNTSGEYL-------------------------ASVSDELVRVWSIGSGSKGECIH 762
S + ++V + + SGS+ +
Sbjct: 61 WSSQMRDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLR 120
Query: 763 ELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSAHDKLVSSLAASTVNG 822
+ + V + + + + +L T
Sbjct: 121 VWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRV 180
Query: 823 M--------VASASHDKCVKIW 836
V S S D +++W
Sbjct: 181 YSLQFDGIHVVSGSLDTSIRVW 202
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 94.5 bits (233), Expect = 2e-21
Identities = 42/288 (14%), Positives = 87/288 (30%), Gaps = 9/288 (3%)
Query: 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEE-----HTQWITDVRFSPSL 609
V + S + + TGG +W KS + + +I + P
Sbjct: 51 GEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDG 109
Query: 610 SRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWS 669
L T+ +WD P ++ S + SC ++ I W
Sbjct: 110 CTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWD 169
Query: 670 INNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHS 729
++N + F+ + G L + + +L+ +Q+ S
Sbjct: 170 LHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDFTSQIFS 229
Query: 730 VCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCY 789
+ + +GE+ ++ + ++L + S F + G
Sbjct: 230 LGYCPTGEW---LAVGMESSNVEVLHVNKPDKYQLHLHESCVLSLKFAYCGKWFVSTGKD 286
Query: 790 ETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 837
L W ++ S V S S + + + S DK +++
Sbjct: 287 NLLNAWRTPYGASIFQSKESSSVLSCDISVDDKYIVTGSGDKKATVYE 334
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 81.4 bits (199), Expect = 3e-17
Identities = 46/295 (15%), Positives = 84/295 (28%), Gaps = 9/295 (3%)
Query: 548 FQLIPASTSKVESCHFSPDGKLLATGG-HDKKAVLWCTESFTVKSTLEEHTQWITDVRFS 606
FQ S S H + DG++ D +TL H + + V S
Sbjct: 3 FQGAMGSK-PAYSFHVTADGQMQPVPFPPDALIGPGIPRHARQINTLN-HGEVVCAVTIS 60
Query: 607 PSLSRLATSSADRTVRVWDTENPDY----SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN 662
+ T V+VWD +P S + S P L+ + +
Sbjct: 61 NPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEAS 119
Query: 663 SEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQG 722
+ + S + + + +I + L Q
Sbjct: 120 TLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQF 179
Query: 723 HKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPS 782
+ + C + S + + L +G + + T S + PT
Sbjct: 180 QGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDFTSQ-IFSLGYCPTGEW 238
Query: 783 LLVIGCYETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 837
L V +E+ ++ + L H+ V SL + S D + W+
Sbjct: 239 LAVGMESSNVEVLHVNKPDKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWR 293
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Score = 91.5 bits (225), Expect = 2e-20
Identities = 38/306 (12%), Positives = 81/306 (26%), Gaps = 31/306 (10%)
Query: 558 VESCHFSPDGKLLATGGHDKKAVLWCTES--FTVKSTLEEHTQWITDVRFSPSLSRLATS 615
+ ++ D +A ++ + ++ + L+EH +T V ++P +R+ T
Sbjct: 10 ISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTC 69
Query: 616 SADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS- 674
DR VW + + E + I +
Sbjct: 70 GTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQEND 129
Query: 675 ----CAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVET----------------- 713
+S + + P + A + + I
Sbjct: 130 WWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMP 189
Query: 714 -QVCRLKLQGHKNQVHSVCWNTSGEYLASVSDE-LVRVWSIGSGSKGECIHELSCTGNKF 771
+ VH VC++ +G +A VS + V + + +
Sbjct: 190 FGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADA----DKKMAVATLASETLP 245
Query: 772 HSCVFHPTFPSLLVIGCYETLELWNM-TENKTLTLSAHDKLVSSLAASTVNGMVASASHD 830
V T SL+ G L+ + L+ + + + + D
Sbjct: 246 LLAVTFITESSLVAAGHDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLD 305
Query: 831 KCVKIW 836
K
Sbjct: 306 KKASSE 311
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Score = 79.1 bits (193), Expect = 3e-16
Identities = 39/265 (14%), Positives = 91/265 (34%), Gaps = 25/265 (9%)
Query: 596 HTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYS-LRTFTGHSTTVMSLDFHPSKED 654
+ I+ ++ +++A + V +++ + + H+ V +D+ P +
Sbjct: 6 LVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAP-DSN 64
Query: 655 LLCSCDNNSEIRYWSINNGSCAGVF---KCQSGATQMRFQPRLGRILAAAIENYISILDV 711
+ +C + W++ + + A +R+ P + + ISI
Sbjct: 65 RIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYF 124
Query: 712 ET----QVCRLKLQGHKNQVHSVCWNTSGEYLASVSDE-LVRVWSIGSGS---------- 756
E VC+ + ++ V S+ W+ + LA+ S + R++S
Sbjct: 125 EQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPW 184
Query: 757 -----KGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSAHDKL 811
GE + E S + H F + + T+ L + + + A + L
Sbjct: 185 GSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASETL 244
Query: 812 VSSLAASTVNGMVASASHDKCVKIW 836
+ +A HD ++
Sbjct: 245 PLLAVTFITESSLVAAGHDCFPVLF 269
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Score = 71.0 bits (172), Expect = 1e-13
Identities = 38/320 (11%), Positives = 89/320 (27%), Gaps = 30/320 (9%)
Query: 544 TFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVK--STLEEHTQWIT 601
+ + + +V ++PD + T G D+ A +W + T K + +
Sbjct: 40 KWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAAR 99
Query: 602 DVRFSPSLSRLATSSADRTVRVWD--TENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSC 659
VR++P+ + A S R + + EN + + + + LL +
Sbjct: 100 CVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAG 159
Query: 660 DNNSEIRYWSINNGSCAGVFK-------------------CQSGATQMRFQPRLGRILAA 700
+ + R +S + F R+
Sbjct: 160 SCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWV 219
Query: 701 AIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGEC 760
+ ++ + + D + ++ L + +V + T +A+ D +++ S +
Sbjct: 220 SHDSTVCLADADKKMAVATLASETLPLLAVTFITESSLVAAGHDCFPVLFTYDSAA---G 276
Query: 761 IHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSAHDKLVSSLAAS-- 818
+ + S H VS ++
Sbjct: 277 KLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSG 336
Query: 819 --TVNGMVASASHDKCVKIW 836
+ D + IW
Sbjct: 337 GKAKCSQFCTTGMDGGMSIW 356
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Score = 56.8 bits (135), Expect = 5e-09
Identities = 18/117 (15%), Positives = 36/117 (30%), Gaps = 6/117 (5%)
Query: 561 CHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRT 620
F + L+A GHD VL+ +S K + +R + D+
Sbjct: 249 VTFITESSLVAA-GHDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKK 307
Query: 621 VRVWDTENPDYSLRTFTGHSTTVMSLDFHP---SKEDLLCSCDNNSEIRYWSINNGS 674
+ L + H +V + +K C+ + + W + +
Sbjct: 308 ASSEGSAAAGAGL--DSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRSLE 362
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Score = 44.8 bits (104), Expect = 3e-05
Identities = 11/86 (12%), Positives = 25/86 (29%), Gaps = 5/86 (5%)
Query: 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSP----SLS 610
+ DKKA + + H ++ + S
Sbjct: 284 LDVPKQSSQRGLTARERFQNLDKKASSEGSAAAG-AGLDSLHKNSVSQISVLSGGKAKCS 342
Query: 611 RLATSSADRTVRVWDTENPDYSLRTF 636
+ T+ D + +WD + + +L+
Sbjct: 343 QFCTTGMDGGMSIWDVRSLESALKDL 368
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Score = 44.5 bits (103), Expect = 3e-05
Identities = 13/78 (16%), Positives = 26/78 (33%), Gaps = 2/78 (2%)
Query: 721 QGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPT 779
+ WN +A + V ++ SG+K +HEL + + P
Sbjct: 4 SFLVEPISCHAWNKDRTQIAICPNNHEVHIYEK-SGNKWVQVHELKEHNGQVTGVDWAPD 62
Query: 780 FPSLLVIGCYETLELWNM 797
++ G +W +
Sbjct: 63 SNRIVTCGTDRNAYVWTL 80
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 89.1 bits (219), Expect = 6e-20
Identities = 45/288 (15%), Positives = 88/288 (30%), Gaps = 30/288 (10%)
Query: 563 FSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVR 622
D + + +G D +W + K L HT + +++ + +
Sbjct: 21 LQYDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDERV------IITGSSD 74
Query: 623 VWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK-- 680
+ ++ ++ +C + I W + + + + +
Sbjct: 75 STVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVL 134
Query: 681 CQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLA 740
A I++A+ + I + + T L GHK + C +
Sbjct: 135 VGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIA--CLQYRDRLVV 192
Query: 741 S-VSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYE-TLELWNMT 798
S SD +R+W I EC L +V G Y+ +++W++
Sbjct: 193 SGSSDNTIRLWDI------ECGACLRVLEGHEELVRCIRFDNKRIVSGAYDGKIKVWDLV 246
Query: 799 ENKTL----------TLSAHDKLVSSLAASTVNGMVASASHDKCVKIW 836
TL H V L + S+SHD + IW
Sbjct: 247 AALDPRAPAGTLCLRTLVEHSGRVFRLQFD--EFQIVSSSHDDTILIW 292
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 54.9 bits (130), Expect = 1e-08
Identities = 31/247 (12%), Positives = 70/247 (28%), Gaps = 51/247 (20%)
Query: 591 STLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHP 650
E ++ + +++ ++ + D T+++WD + R TGH+ +V+ L +
Sbjct: 9 HCRSETSKGVYCLQYDDQ--KIVSGLRDNTIKIWDKNTLE-CKRILTGHTGSVLCLQYDE 65
Query: 651 SKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILD 710
S + + + + +I + +
Sbjct: 66 RVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVW-DMAS 124
Query: 711 VETQVCRLKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCTGNK 770
R L GH+ V+ V ++ AS D ++VW+ + E + L+
Sbjct: 125 PTDITLRRVLVGHRAAVNVVDFDDKYIVSAS-GDRTIKVWNTSTC---EFVRTLNGHKRG 180
Query: 771 FHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHD 830
+ +V S S D
Sbjct: 181 IACLQYRDR-------------------------------------------LVVSGSSD 197
Query: 831 KCVKIWK 837
+++W
Sbjct: 198 NTIRLWD 204
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 49.5 bits (116), Expect = 6e-07
Identities = 17/74 (22%), Positives = 31/74 (41%), Gaps = 11/74 (14%)
Query: 561 CHFSPDGKLLATGGHDKKAVLWCTESFTVKS---------TLEEHTQWITDVRFSPSLSR 611
D K + +G +D K +W + TL EH+ + ++F +
Sbjct: 222 RCIRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFDEF--Q 279
Query: 612 LATSSADRTVRVWD 625
+ +SS D T+ +WD
Sbjct: 280 IVSSSHDDTILIWD 293
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 85.3 bits (209), Expect = 3e-18
Identities = 36/299 (12%), Positives = 88/299 (29%), Gaps = 19/299 (6%)
Query: 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLAT 614
+ V +C + + TG DK ++ + + L H + ++++ L +
Sbjct: 12 MTSVITC-LQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHG-GILVS 69
Query: 615 SSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS 674
S DRTVRVWD + + +ST + + ++ + W + S
Sbjct: 70 GSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKES 129
Query: 675 CAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNT 734
+ + P + +++ + + + + G + V
Sbjct: 130 SVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVA 189
Query: 735 SGEYLASVSDELVRVWSIGSGSKGECI-----------------HELSCTGNKFHSCVFH 777
+ L +S R++S + + +
Sbjct: 190 QMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLL 249
Query: 778 PTFPSLLVIGCYETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIW 836
LV + + + S H +S++ V+ + + + I+
Sbjct: 250 RLSDKFLVSAAADGSIRGWDANDYSRKFSYHHTNLSAITTFYVSDNILVSGSENQFNIY 308
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 53.4 bits (126), Expect = 5e-08
Identities = 29/193 (15%), Positives = 59/193 (30%), Gaps = 6/193 (3%)
Query: 561 CHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRT 620
S G ++ +G +D ++W L HT I + R ++S D T
Sbjct: 165 RTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTT 224
Query: 621 VRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK 680
+R+WD EN + + + N
Sbjct: 225 IRIWDLENGELMYTLQGHTALVGLLRLSDKF-----LVSAAADGSIRGWDANDYSRKFSY 279
Query: 681 CQSGATQMRFQPRLGRILAAAIENYISILDVET-QVCRLKLQGHKNQVHSVCWNTSGEYL 739
+ + + IL + EN +I ++ + ++ + +Q+ SV +
Sbjct: 280 HHTNLSAITTFYVSDNILVSGSENQFNIYNLRSGKLVHANILKDADQIWSVNFKGKTLVA 339
Query: 740 ASVSDELVRVWSI 752
A D + +
Sbjct: 340 AVEKDGQSFLEIL 352
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 53.4 bits (126), Expect = 5e-08
Identities = 6/90 (6%), Positives = 24/90 (26%)
Query: 582 WCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHST 641
++ H ++ + + S ++ +++ + +
Sbjct: 266 RGWDANDYSRKFSYHHTNLSAITTFYVSDNILVSGSENQFNIYNLRSGKLVHANILKDAD 325
Query: 642 TVMSLDFHPSKEDLLCSCDNNSEIRYWSIN 671
+ S++F D S + +
Sbjct: 326 QIWSVNFKGKTLVAAVEKDGQSFLEILDFS 355
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 53.0 bits (125), Expect = 8e-08
Identities = 10/69 (14%), Positives = 22/69 (31%), Gaps = 3/69 (4%)
Query: 558 VESCHFSPDGKLLATGGHDKKAVLWCTESFT-VKSTLEEHTQWITDVRFSPSLSRLATSS 616
F +L +G + + ++ S V + + + I V F + +A
Sbjct: 285 SAITTFYVSDNILVSGS-ENQFNIYNLRSGKLVHANILKDADQIWSVNFKGK-TLVAAVE 342
Query: 617 ADRTVRVWD 625
D +
Sbjct: 343 KDGQSFLEI 351
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 46.8 bits (109), Expect = 7e-06
Identities = 21/126 (16%), Positives = 42/126 (33%), Gaps = 11/126 (8%)
Query: 717 RLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCV 775
R L+GH V + C Y+ + + D+++RV+ + + +LS +
Sbjct: 5 RTTLRGHMTSVIT-CLQFEDNYVITGADDKMIRVYDS---INKKFLLQLSGHDGGVWALK 60
Query: 776 FHPTFPSLLVIGCYETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMV----ASASHDK 831
+ +LV G + + T + V + S D
Sbjct: 61 YAHG--GILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDN 118
Query: 832 CVKIWK 837
+ +WK
Sbjct: 119 TLHVWK 124
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 43.3 bits (100), Expect = 8e-05
Identities = 35/273 (12%), Positives = 73/273 (26%), Gaps = 49/273 (17%)
Query: 565 PDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRL-ATSSADRTVRV 623
P + G + L + + VR + + S D T+ V
Sbjct: 126 PKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIV 185
Query: 624 WDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQS 683
WD +GH+ + S + ++ + + + + IR W + NG + +
Sbjct: 186 WDVAQMKCL-YILSGHTDRIYSTIYDHERKRCISASMDTT-IRIWDLENGELMYTLQGHT 243
Query: 684 GATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS 743
+ + AAA + + H N + S L S S
Sbjct: 244 ALVGLLRLSDKFLVSAAADGSIRGWDANDYSRKFS--YHHTNLSAITTFYVSDNILVSGS 301
Query: 744 DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL 803
+ ++++ S G+ +H
Sbjct: 302 ENQFNIYNLRS---GKLVHA---------------------------------------- 318
Query: 804 TLSAHDKLVSSLAASTVNGMVASASHDKCVKIW 836
+ + S+ +VA+ D +
Sbjct: 319 NILKDADQIWSVNFKG-KTLVAAVEKDGQSFLE 350
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 84.6 bits (207), Expect = 3e-18
Identities = 37/312 (11%), Positives = 86/312 (27%), Gaps = 26/312 (8%)
Query: 552 PAST-SKVESCHFSPDGKLLATGGHDKKAV----LWCTESFTVKSTLEEHTQWITDVRFS 606
P++ + + P +A V ++ V + +T V+FS
Sbjct: 13 PSTQRNFTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFS 72
Query: 607 PSLS--RLATSSADRTVRVWDTENPDYS-------LRTFTGHSTTVMSLDFHP-SKEDLL 656
P L + V VW S F + + + + + +
Sbjct: 73 PIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCV 132
Query: 657 CSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVC 716
++ + S ++G+ G S + + + + + S++ +
Sbjct: 133 VGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPF 192
Query: 717 RLKLQ-----GHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCTGNKF 771
+ + V V ++ ++ S +
Sbjct: 193 KFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQ 252
Query: 772 HSCVFHPTFPSLLVIGCYE--TLELWNMTENK---TLTLSAHDKLVSSLA-ASTVNGMVA 825
S T+ +W++T +K TL + +T NG +
Sbjct: 253 GGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRII 312
Query: 826 SASHDKCVKIWK 837
S S D + ++
Sbjct: 313 SLSLDGTLNFYE 324
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 50.3 bits (118), Expect = 4e-07
Identities = 11/63 (17%), Positives = 25/63 (39%), Gaps = 3/63 (4%)
Query: 610 SRLATSSADRTVRVWDTENPDYSLRTFTGHSTTV--MSLDFHPSKEDLLCSCDNNSEIRY 667
+ AT AD T+RVWD ++ +T + + + + S + + +
Sbjct: 264 QKFATVGADATIRVWDVTTSK-CVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNF 322
Query: 668 WSI 670
+ +
Sbjct: 323 YEL 325
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 82.0 bits (200), Expect = 2e-17
Identities = 36/286 (12%), Positives = 82/286 (28%), Gaps = 6/286 (2%)
Query: 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEE-HTQWITDVRFSPSLSRLA 613
+ + S DGK L + + W + + H IT ++ + L
Sbjct: 12 NKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSK-GDLF 70
Query: 614 TSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNG 673
T S D ++V + + L S + + I +S
Sbjct: 71 TVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKL 130
Query: 674 SCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWN 733
+ + S + + + + + + + + + N
Sbjct: 131 TEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNN 190
Query: 734 TSGEYLASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLE 793
+ S + V +S+ + + + + K + P L ++
Sbjct: 191 GAFLVATDQSRK-VIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVI 249
Query: 794 LWNM---TENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIW 836
+WNM +++ + AH + + SA D +K W
Sbjct: 250 VWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETTIVSAGQDSNIKFW 295
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 48.1 bits (112), Expect = 2e-06
Identities = 12/67 (17%), Positives = 26/67 (38%), Gaps = 2/67 (2%)
Query: 561 CHFSPDGKLLATGGHDKKAVLWCTESFTVKSTL--EEHTQWITDVRFSPSLSRLATSSAD 618
+SPD LATG D ++W + + H + + + + ++ D
Sbjct: 230 VSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETTIVSAGQD 289
Query: 619 RTVRVWD 625
++ W+
Sbjct: 290 SNIKFWN 296
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 42.3 bits (97), Expect = 2e-04
Identities = 10/132 (7%), Positives = 33/132 (25%), Gaps = 3/132 (2%)
Query: 624 WDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQS 683
+ T+V + S + +
Sbjct: 166 SGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTA 225
Query: 684 GATQMRFQPRLGRILAAAIENYISILDVET--QVCRLKLQGHKNQVHSVCWNTSGEYLAS 741
+ + P R+ +++N + + ++ + H + + + S
Sbjct: 226 KVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETTIVS 285
Query: 742 VS-DELVRVWSI 752
D ++ W++
Sbjct: 286 AGQDSNIKFWNV 297
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 82.2 bits (201), Expect = 2e-17
Identities = 34/317 (10%), Positives = 73/317 (23%), Gaps = 27/317 (8%)
Query: 548 FQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLE---EHTQWITDVR 604
Q+ A + P LL D ++ + L + +
Sbjct: 4 VQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCN 63
Query: 605 FSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSE 664
F + + + S + T + + +D L + +
Sbjct: 64 FIDNTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGL 123
Query: 665 IRYWSINNGSCAGVFKCQSGATQMRFQPRL-------GRILAAAIENYISILDVETQVCR 717
I N + + + + ++ R++ + + +
Sbjct: 124 IEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDD 183
Query: 718 LKLQGHKN----QVHSVCWNTSGEYLASVS-DELVRVWSIGSGSK------------GEC 760
E A S D V V
Sbjct: 184 NGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRL 243
Query: 761 IHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSAHDKLVSSLAASTV 820
+ + +S F P L G + WN+ K + A S + +
Sbjct: 244 NLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIACS 303
Query: 821 NGMVASASHDKCVKIWK 837
+ ++ A+ D K
Sbjct: 304 DNILCLATSDDTFKTNA 320
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 50.2 bits (118), Expect = 5e-07
Identities = 13/126 (10%), Positives = 36/126 (28%), Gaps = 17/126 (13%)
Query: 561 CHFSPDGKLLATGGHDKKAVLWCTES---------------FTVKSTLEEHTQWITDVRF 605
+ + A D + + + + + + F
Sbjct: 200 ALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEF 259
Query: 606 SPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEI 665
SP L T+ +D + W+ + ++ F + + S L + +++
Sbjct: 260 SPRHKFLYTAGSDGIISCWNLQTRK-KIKNFAKFNEDS-VVKIACSDNILCLATSDDTFK 317
Query: 666 RYWSIN 671
+I+
Sbjct: 318 TNAAID 323
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 38.7 bits (88), Expect = 0.003
Identities = 18/155 (11%), Positives = 42/155 (27%), Gaps = 20/155 (12%)
Query: 617 ADRTVRVWD--TENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS 674
+ V+ + D +G + + P +++ + + ++
Sbjct: 168 NNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQG 227
Query: 675 CAGVFKCQSGATQMR----------------FQPRLGRILAAAIENYISILDVETQVCRL 718
+ R F PR + A + IS +++T+
Sbjct: 228 DDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIK 287
Query: 719 KLQGHKNQVHSVCWNTSGEYLAS-VSDELVRVWSI 752
N+ V S L SD+ + +
Sbjct: 288 NFAKF-NEDSVVKIACSDNILCLATSDDTFKTNAA 321
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 80.7 bits (197), Expect = 5e-17
Identities = 39/301 (12%), Positives = 87/301 (28%), Gaps = 13/301 (4%)
Query: 548 FQLIPASTS-KVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFS 606
F +P + +P G + + S T EH+ T + S
Sbjct: 9 FPSLPRTARGTAVVLGNTPAGDKIQYC-NGTSVYTVPVGSLTDTEIYTEHSHQTTVAKTS 67
Query: 607 PSLSRLATSSADRTVRVWDTENPDYSLRT-FTGHSTTVMSLDFHPSKEDLLCSCDNNSEI 665
PS A+ VR+WDT + L+T S V + + + + +
Sbjct: 68 PSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERF 127
Query: 666 RYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKN 725
+ + + + + R + + + +
Sbjct: 128 GHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGE 187
Query: 726 QVHSVCWN----TSGEYLASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFP 781
V + ++ D + +++ G+K + S VF T+
Sbjct: 188 HTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWS 247
Query: 782 ---SLLVIGCYE-TLELWNMTENKTL-TLSAHDKL-VSSLAASTVNGMVASASHDKCVKI 835
+ + + T+++WN+ K T+ ++ L + S S + +
Sbjct: 248 PDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINF 307
Query: 836 W 836
Sbjct: 308 V 308
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 59.9 bits (143), Expect = 3e-10
Identities = 15/68 (22%), Positives = 29/68 (42%), Gaps = 1/68 (1%)
Query: 561 CHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQ-WITDVRFSPSLSRLATSSADR 619
+SPDG +A+ DK +W + V+ T+ T+ + + L + SA+
Sbjct: 244 LTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANG 303
Query: 620 TVRVWDTE 627
+ + E
Sbjct: 304 FINFVNPE 311
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Score = 76.3 bits (186), Expect = 2e-15
Identities = 23/318 (7%), Positives = 69/318 (21%), Gaps = 47/318 (14%)
Query: 563 FSPDGKLLATGGHDKKAVLWCTESFTVKSTLE-EHTQWITDVRFSPSLSRL-ATSSADRT 620
+ + + + S TV + +P ++
Sbjct: 4 LKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGD 63
Query: 621 VRVWDTENPDYS-----LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNS-----------E 664
+ D + + ++ S P +++ + +
Sbjct: 64 IYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPR 123
Query: 665 IRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHK 724
+ +S +G A + Q+ I +DV+T + L
Sbjct: 124 LEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYVAGPDIYKMDVKTGKYTVALPLRN 183
Query: 725 -------------------------NQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKG 758
+ + A+ + G
Sbjct: 184 WNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDL---KTG 240
Query: 759 ECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSAHDKLVSSLAAS 818
+ + + + + G L +++ + K + + D +A
Sbjct: 241 KTHTQEFADLTELYFTGLRSPKDPNQIYGVLNRLAKYDLKQRKLIKAANLDHTYYCVAFD 300
Query: 819 TVNGMVASASHDKCVKIW 836
+ + ++
Sbjct: 301 KKGDKLYLGGTFNDLAVF 318
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Score = 50.1 bits (118), Expect = 6e-07
Identities = 9/73 (12%), Positives = 20/73 (27%), Gaps = 2/73 (2%)
Query: 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLAT 614
T + SP G ++ A + + + V F +L
Sbjct: 251 TELYFTGLRSPKDPNQIYGVLNRLAK-YDLKQRKLIKAAN-LDHTYYCVAFDKKGDKLYL 308
Query: 615 SSADRTVRVWDTE 627
+ V++ +
Sbjct: 309 GGTFNDLAVFNPD 321
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Score = 43.6 bits (101), Expect = 7e-05
Identities = 15/125 (12%), Positives = 32/125 (25%), Gaps = 5/125 (4%)
Query: 561 CHFSPDGKLLATGGHDKKAVLWCTESFTV-KSTLEEHTQWITDVRFSPSLSRLATSSADR 619
F D + AT + ++ + T+ SP +
Sbjct: 214 ARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGVLN- 272
Query: 620 TVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVF 679
+ +D + H T + F D L +++ ++ +
Sbjct: 273 RLAKYDLKQRKLIKAANLDH--TYYCVAFDKK-GDKLYLGGTFNDLAVFNPDTLEKVKNI 329
Query: 680 KCQSG 684
K G
Sbjct: 330 KLPGG 334
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 75.0 bits (182), Expect = 2e-15
Identities = 34/289 (11%), Positives = 80/289 (27%), Gaps = 54/289 (18%)
Query: 592 TLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPS 651
T+ H + IT + +P L + S D + W + + HS ++SLD +
Sbjct: 8 TISGHNKGITALTVNP----LISGSYDGRIMEWSSSS------MHQDHSNLIVSLDNSKA 57
Query: 652 KEDLLCSCDNNSEIRYWSINNGS--------------------------------CAGVF 679
+E S D+ ++ + +
Sbjct: 58 QEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSV 117
Query: 680 KCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYL 739
+ S + + + + +V + + + + S Y+
Sbjct: 118 RLNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYI 177
Query: 740 ASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYE--------- 790
A+ + + + T + +
Sbjct: 178 AAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDT 237
Query: 791 TLELWNMTENKTL--TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 837
+ ++++ + L+AH V++L T + S+ D C+K W
Sbjct: 238 NIFIYSVKRPMKIIKALNAHKDGVNNLLWET-PSTLVSSGADACIKRWN 285
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 56.1 bits (133), Expect = 4e-09
Identities = 12/89 (13%), Positives = 29/89 (32%), Gaps = 2/89 (2%)
Query: 582 WCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHST 641
+ + + +AT S D + ++ + P ++ H
Sbjct: 200 RWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKD 259
Query: 642 TVMSLDFHPSKEDLLCSCDNNSEIRYWSI 670
V +L + L S ++ I+ W++
Sbjct: 260 GVNNLLWET--PSTLVSSGADACIKRWNV 286
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 45.0 bits (104), Expect = 2e-05
Identities = 14/97 (14%), Positives = 37/97 (38%), Gaps = 1/97 (1%)
Query: 657 CSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVC 716
+ W+ + + + + +++ I I V+ +
Sbjct: 190 DLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMK 249
Query: 717 RLK-LQGHKNQVHSVCWNTSGEYLASVSDELVRVWSI 752
+K L HK+ V+++ W T ++S +D ++ W++
Sbjct: 250 IIKALNAHKDGVNNLLWETPSTLVSSGADACIKRWNV 286
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 38.8 bits (88), Expect = 0.002
Identities = 11/44 (25%), Positives = 20/44 (45%), Gaps = 5/44 (11%)
Query: 633 LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCA 676
L+T +GH+ + +L +P L S + I WS ++
Sbjct: 6 LKTISGHNKGITALTVNP-----LISGSYDGRIMEWSSSSMHQD 44
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Score = 74.1 bits (180), Expect = 1e-14
Identities = 25/299 (8%), Positives = 63/299 (21%), Gaps = 30/299 (10%)
Query: 563 FSP-DGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSAD--R 619
FSP DG L+A + + + ++ +K I VR
Sbjct: 10 FSPLDGDLIAFVSRGQAFIQDVSGTYVLKVP---EPLRIRYVRRGGDTKVAFIHGTREGD 66
Query: 620 TVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVF 679
+ ++D F + V ++ + + + + D +
Sbjct: 67 FLGIYDYRTG--KAEKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIER 124
Query: 680 KCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCR---------LKLQGHKNQVHSV 730
++ T I + Q + ++
Sbjct: 125 SREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAATTENSHDYAP 184
Query: 731 CWNTSGEYLASVS-DELVRVWSIGSGS----KGECIHELSCTGNKFHSCVFHPTFPSLLV 785
++ + L +S L + + + P +
Sbjct: 185 AFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEA 244
Query: 786 IGCYETLELWNMTENKT--------LTLSAHDKLVSSLAASTVNGMVASASHDKCVKIW 836
+ + L + + S A + +
Sbjct: 245 GEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKY 303
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Score = 70.7 bits (171), Expect = 2e-13
Identities = 23/305 (7%), Positives = 57/305 (18%), Gaps = 24/305 (7%)
Query: 553 ASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRL 612
++ D K+ G + L + T K+ E +
Sbjct: 40 PEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKAEKFEENLGNVFAMGVDRNGKF 99
Query: 613 ATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLC---------SCDNNS 663
A + DR + + + +
Sbjct: 100 AVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQ 159
Query: 664 EIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCR------ 717
I + + S F + + + D
Sbjct: 160 AIHVYDMEGRKIFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSK 219
Query: 718 -LKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCTGNKFH---- 772
+ + + +L ++ S + +
Sbjct: 220 PFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIY 279
Query: 773 -SCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDK 831
V L +++ K + + ++ L S V D
Sbjct: 280 SVPVHGEFAAYYQGAPEKGVLLKYDVKTRKVTEVKNN---LTDLRLSADRKTVMVRKDDG 336
Query: 832 CVKIW 836
+ +
Sbjct: 337 KIYTF 341
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Score = 61.8 bits (148), Expect = 1e-10
Identities = 9/87 (10%), Positives = 22/87 (25%), Gaps = 4/87 (4%)
Query: 544 TFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDV 603
+ + +S + + + + E +TD+
Sbjct: 265 DYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVK----TRKVTEVKNNLTDL 320
Query: 604 RFSPSLSRLATSSADRTVRVWDTENPD 630
R S + D + + E P+
Sbjct: 321 RLSADRKTVMVRKDDGKIYTFPLEKPE 347
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Score = 42.9 bits (99), Expect = 1e-04
Identities = 19/250 (7%), Positives = 53/250 (21%), Gaps = 19/250 (7%)
Query: 603 VRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLL-CSCDN 661
FSP L + + D + + + +
Sbjct: 8 EDFSPLDGDLIAFVSRGQAFIQDVSG---TYVLKVPEPLRIRYVRRGGDTKVAFIHGTRE 64
Query: 662 NSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQ 721
+ + G + M + A I +D+ET + +
Sbjct: 65 GDFLGIYDYRTGKAEKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIER 124
Query: 722 GHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGS-------KGECIHELSCTGNKFHSC 774
+ + + + ++A +G I + + ++
Sbjct: 125 SREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAATTENSHDYAP 184
Query: 775 VFHPTFPSLLVIGCYETLELWN--------MTENKTLTLSAHDKLVSSLAASTVNGMVAS 826
F +L + + +K + + + +
Sbjct: 185 AFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEA 244
Query: 827 ASHDKCVKIW 836
+D
Sbjct: 245 GEYDLNDMYK 254
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 67.6 bits (163), Expect = 2e-12
Identities = 28/260 (10%), Positives = 69/260 (26%), Gaps = 65/260 (25%)
Query: 588 TVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPD-----------YSLRTF 636
+ + H I V S + S D ++VWD + D + ++
Sbjct: 5 ATANAGKAHDADIFSVSACNSF--TVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSG 62
Query: 637 TGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGR 696
H + +++ + L+ + + ++ ++ I +
Sbjct: 63 LHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDL---------- 112
Query: 697 ILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGS 756
L K+ ++ W S + L
Sbjct: 113 ---------------------LDSDMKKHSFWALKWGASNDRL----------------- 134
Query: 757 KGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSAHDKLVSSLA 816
H L T K + ++ + + + + +S+
Sbjct: 135 ---LSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVD 191
Query: 817 ASTVNGMVASASHDKCVKIW 836
S G++A+ ++ V+I
Sbjct: 192 ISE-RGLIATGFNNGTVQIS 210
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 65.3 bits (157), Expect = 1e-11
Identities = 34/315 (10%), Positives = 75/315 (23%), Gaps = 45/315 (14%)
Query: 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEE------HTQWITDVRFSPS 608
+ + S + D +W + ++ ++ H + V +
Sbjct: 14 DADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQA 71
Query: 609 LSR-------LATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDN 661
+ R +AT+S + + D + ++ D L +
Sbjct: 72 IERDAFELCLVATTSFSGDLLFYRITRED-ETKKVIFEKLDLLDSDMKKHSFWALKWGAS 130
Query: 662 NSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQ 721
N + + G L +E Q
Sbjct: 131 NDRLLSHRLVATDVKGTTYIWKFHPFADESNSL---------TLNWSPTLELQGTVESPM 181
Query: 722 GHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCTGNKFH--------- 772
SV + G ++ V++ + + N +
Sbjct: 182 TPSQFATSVDISERGLIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSP 241
Query: 773 -----------SCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSAHDKLVSSLAASTVN 821
+ T +L + + +L AH V SL+ +
Sbjct: 242 QGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSG 301
Query: 822 GMVASASHDKCVKIW 836
+ SA D ++ W
Sbjct: 302 ETLCSAGWDGKLRFW 316
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 52.5 bits (124), Expect = 1e-07
Identities = 36/256 (14%), Positives = 75/256 (29%), Gaps = 51/256 (19%)
Query: 556 SKVESCHFSPDG-----KLLATGGHDKKAVLWCTESFTVKS------------------T 592
+ + L +W F +S +
Sbjct: 120 HSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVES 179
Query: 593 LEEHTQWITDVRFSPSLSRLATSSADRTVRVWD-----TENPDYSLRTFTGHSTTVMSLD 647
+Q+ T V S +AT + TV++ + S + +S ++ S+
Sbjct: 180 PMTPSQFATSVDISER-GLIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVK 238
Query: 648 FHPSKEDLLCSCDNNSEIRY----------------WSINNGSCAGVFKCQSGATQMRFQ 691
F P L + D+NS + ++ + G F S + F
Sbjct: 239 FSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFN 298
Query: 692 PRLGRILAAAIENYISILDVETQVCRLKLQGHKNQV----HSVCWNTSGEYLASVSDELV 747
+ +A + + DV+T+ L H + + + + G+ LA +
Sbjct: 299 DSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPG--VF 356
Query: 748 RVWSIGSGSKGECIHE 763
V + G + +
Sbjct: 357 DVKFLKKGWRSGMGAD 372
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 47.9 bits (112), Expect = 3e-06
Identities = 27/118 (22%), Positives = 41/118 (34%), Gaps = 21/118 (17%)
Query: 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWI----TDVRFSPSLS 610
+S V S F+ G+ L + G D K W ++ +TL H I +
Sbjct: 289 SSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGD 348
Query: 611 RLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYW 668
LA V+D + R+ G E L C C + S IR++
Sbjct: 349 SLAEPG------VFDVKFLKKGWRSGMGADLN----------ESLCCVCLDRS-IRWF 389
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Score = 66.8 bits (161), Expect = 2e-12
Identities = 32/309 (10%), Positives = 72/309 (23%), Gaps = 44/309 (14%)
Query: 568 KLLATGGHDKKAVLWCTESFTVKSTLE--EHTQWITDVRFSPSLSRL-ATSSADRTVRVW 624
+ K V+ TE V + + +P AT + ++
Sbjct: 2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKI 61
Query: 625 DTENP----DYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRY-----------WS 669
D L T ++ P + L +
Sbjct: 62 DLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYD 121
Query: 670 INNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQG------- 722
S F+ T + + ++ + ++ + T V +Q
Sbjct: 122 AETLSRRKAFEAPRQITMLAWARDGSKLYGLGRDLHVMDPEAGTLVEDKPIQSWEAETYA 181
Query: 723 --------------HKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCT 767
+ + + + +G + E+
Sbjct: 182 QPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGE--MAMREVRIM 239
Query: 768 GNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASA 827
+ S +P G Y LE +++ +N ++ S+ ST V
Sbjct: 240 DVFYFSTAVNP--AKTRAFGAYNVLESFDLEKNASIKRVPLPHSYYSVNVSTDGSTVWLG 297
Query: 828 SHDKCVKIW 836
+ +
Sbjct: 298 GALGDLAAY 306
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Score = 52.1 bits (123), Expect = 1e-07
Identities = 16/193 (8%), Positives = 47/193 (24%), Gaps = 26/193 (13%)
Query: 558 VESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEE---------------------H 596
+ ++ DG L G D + + ++
Sbjct: 137 ITMLAWARDGSKLYGLGRDLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSG 196
Query: 597 TQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLL 656
+ ++ + D E + ++R S +P+K
Sbjct: 197 VMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAF 256
Query: 657 CSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVET--Q 714
+ + + + + + + + ++ D ET +
Sbjct: 257 GAYNV---LESFDLEKNASIKRVPLPHSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEK 313
Query: 715 VCRLKLQGHKNQV 727
++ L G+ +
Sbjct: 314 KGQVDLPGNASMS 326
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Score = 38.2 bits (87), Expect = 0.004
Identities = 11/68 (16%), Positives = 21/68 (30%), Gaps = 1/68 (1%)
Query: 544 TFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDV 603
+ +P S S + S DG + GG + E+ K ++ +
Sbjct: 269 KNASIKRVPLPHS-YYSVNVSTDGSTVWLGGALGDLAAYDAETLEKKGQVDLPGNASMSL 327
Query: 604 RFSPSLSR 611
+R
Sbjct: 328 ASVRLFTR 335
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Score = 61.3 bits (148), Expect = 2e-10
Identities = 28/298 (9%), Positives = 75/298 (25%), Gaps = 27/298 (9%)
Query: 563 FSPDGK--LLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRT 620
D + T + L ++ +K+ L+ + R S S L D
Sbjct: 26 NDWDLENLFSVTLRDAGQIALIDGSTYEIKTVLDTG-YAVHISRLSASGRYLFVIGRDGK 84
Query: 621 VRVWDTENPD----YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCA 676
V + D + ++ + + S + + +
Sbjct: 85 VNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPK 144
Query: 677 GVFKCQSGATQMRFQPRLGRILAAAI-------------ENYISILDVET-QVCRLKLQG 722
+ + + R+ A I ++D +
Sbjct: 145 KIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEIS 204
Query: 723 HKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPS 782
+ +H + S Y + ++ ++ I +K + + TG + F
Sbjct: 205 AERFLHDGGLDGSHRYFITAANARNKLVVI--DTKEGKLVAIEDTGGQTPHPGRGANFVH 262
Query: 783 LLVIGCYETLELWN----MTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIW 836
+ T + + + + + + G + +H ++
Sbjct: 263 PTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGGGSLFIKTHPNSQYLY 320
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Score = 56.0 bits (134), Expect = 1e-08
Identities = 36/304 (11%), Positives = 71/304 (23%), Gaps = 37/304 (12%)
Query: 558 VESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLE-----EHTQWITDVRFSPSLSRL 612
V S G+ L G D K + + E E T
Sbjct: 64 VHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGWEDKYA 123
Query: 613 -ATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSIN 671
A + + D E + + + T ++HP + ++
Sbjct: 124 IAGAYWPPQYVIMDGETLEP-KKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVK 182
Query: 672 NGSCAGVFKCQSGATQMRFQPRLGR-------------ILAAAIENYISILDVETQVCRL 718
+ + R + AA ++ + +
Sbjct: 183 ETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLV 242
Query: 719 KLQGHKNQVHSVCWNT------SGEYLASVSDELVRVWSIGSGSKGECIHELSCTGNKFH 772
++ Q G A+ V IG+ +G + K
Sbjct: 243 AIEDTGGQTPHPGRGANFVHPTFGPVWATSHMGDDSVALIGTDPEGHPDN-----AWKIL 297
Query: 773 SCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKC 832
SL + + L+ TL+ ++ S+A + + D
Sbjct: 298 DSFPALGGGSLFIKTHPNSQYLYVDA-----TLNPEAEISGSVAVFDIK-AMTGDGSDPE 351
Query: 833 VKIW 836
K
Sbjct: 352 FKTL 355
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Score = 56.0 bits (133), Expect = 9e-09
Identities = 17/117 (14%), Positives = 35/117 (29%), Gaps = 4/117 (3%)
Query: 537 AEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEH 596
AE G+ +Q + + + V+ ++ + E
Sbjct: 240 AERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFE-M 298
Query: 597 TQWITDVRFSPSLSRL--ATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPS 651
I + S L A S+ D+T+ + D E+ + LR+ +
Sbjct: 299 GHEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEE-LRSVNQLGHGPQVITTADM 354
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Score = 50.6 bits (119), Expect = 4e-07
Identities = 21/301 (6%), Positives = 68/301 (22%), Gaps = 35/301 (11%)
Query: 554 STSKVESCHFSPDGKLLAT----------GGHDKKAVLWCTESFTVKSTLEEHTQWITDV 603
+ + + DG +A G ++ + + +E V
Sbjct: 45 DGGFLPNPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLV 104
Query: 604 RFSPSLSRLATSSADRTVRVWDTE------NPDYSLRTFTGHSTTVMSLDFHPSKEDLLC 657
P + + + +T+ + D + F P+ D
Sbjct: 105 GTYPWM--TSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFF 162
Query: 658 SCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCR 717
+ + + + + + + + + ++ +
Sbjct: 163 MHCRDGSLAKVAFGTEGTPEITHTEVF--HPEDEFLINHPAYSQKAGRLVWPTYTGKIHQ 220
Query: 718 LKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFH 777
+ L + + G + +++ +
Sbjct: 221 IDLSSGDAKFLPAVEALT-------------EAERADGWRPGGWQQVAYHRALDRIYLLV 267
Query: 778 PTFPSLLVIGCYETLELWNMTENKTLTLSAHDKLVSSLAASTVNG--MVASASHDKCVKI 835
+ + + + L + S+ S + A ++ DK + I
Sbjct: 268 DQRDEWRHKTASRFVVVLDAKTGERLAKFEMGHEIDSINVSQDEKPLLYALSTGDKTLYI 327
Query: 836 W 836
Sbjct: 328 H 328
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Score = 49.9 bits (117), Expect = 5e-07
Identities = 25/269 (9%), Positives = 71/269 (26%), Gaps = 8/269 (2%)
Query: 572 TGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRL-ATSSADRTVRVWDTENPD 630
+ S V +T+ + SP +++ ++ V + DT +
Sbjct: 7 ANSESDNISVIDVTSNKVTATIPVGSN-PMGAVISPDGTKVYVANAHSNDVSIIDTATNN 65
Query: 631 YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRF 690
G S +++ + + +S + + + AG K +
Sbjct: 66 VIATVPAGSSPQGVAVSPDGKQVY--VTNMASSTLSVIDTTSNTVAGTVKTGKSPLGLAL 123
Query: 691 QPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVSDELVRVW 750
P ++ + + + + G + + + + +
Sbjct: 124 SPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVGRSPKGIAVTPDGTKVYVANFDSMSIS 183
Query: 751 SIGSGSKGECIHELSCTG-NKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSAHD 809
I + + + V + T+ + + NK
Sbjct: 184 VIDTVTNSVIDTVKVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVG 243
Query: 810 KLVSSLAASTVNG--MVASASHDKCVKIW 836
+ +A + +G + + S V +
Sbjct: 244 PDPAGIAVTP-DGKKVYVALSFCNTVSVI 271
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Score = 39.5 bits (90), Expect = 0.001
Identities = 8/48 (16%), Positives = 16/48 (33%), Gaps = 2/48 (4%)
Query: 582 WCTESFTVKSTLEEHTQWITDVRFSPSLSRL-ATSSADRTVRVWDTEN 628
T + + + + + +P ++ S TV V DT
Sbjct: 229 IDTGTNKITARIPVGP-DPAGIAVTPDGKKVYVALSFCNTVSVIDTAT 275
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Score = 38.3 bits (87), Expect = 0.002
Identities = 25/244 (10%), Positives = 63/244 (25%), Gaps = 6/244 (2%)
Query: 563 FSPDGK-LLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTV 621
SPDG + H + T + V +T+ + T+ A T+
Sbjct: 39 ISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGSSPQGVAVSPDGKQVYVTNMASSTL 98
Query: 622 RVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC 681
V D ++ + + L P + L + + + + + +
Sbjct: 99 SVID--TTSNTVAGTVKTGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSV 156
Query: 682 QSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVH-SVCWNTSGEYLA 740
+ P ++ A ++ + + + +
Sbjct: 157 GRSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVKVEAAPSGIAVNPEGTKAYV 216
Query: 741 SVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYE-TLELWNMTE 799
+ D+ S+ + + G P + V + T+ + +
Sbjct: 217 TNVDKYFNTVSMIDTGTNKITARIP-VGPDPAGIAVTPDGKKVYVALSFCNTVSVIDTAT 275
Query: 800 NKTL 803
N
Sbjct: 276 NTIT 279
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 368 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Score = 46.9 bits (110), Expect = 6e-06
Identities = 34/333 (10%), Positives = 75/333 (22%), Gaps = 54/333 (16%)
Query: 552 PASTSKVESCHFSPDGK-----LLATGGHDKKAVLWCTESFTVKSTLEE----HTQWITD 602
AS + L A + + C
Sbjct: 16 AASDGSSCDHGPGAISRRSHITLPAYFAGTTENWVSCAGCGVTLGHSLGAFLSLAVAGHS 75
Query: 603 VRF----SPSLSRLATSSADRTVRVWDTEN--PDYSLRTFTGHSTTVM----SLDFHPSK 652
S S +R A V V+D P + +V + S
Sbjct: 76 GSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASS 135
Query: 653 EDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRL-------GRILAAAIENY 705
LL +S S+ S + K S + A+ +
Sbjct: 136 ACLLFFLFGSSAAAGLSVPGASDDQLTKSASCFHIHPGAAATHYLGSCPASLAASDLAAA 195
Query: 706 ISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELS 765
+ + + N G + +V+ + I + +
Sbjct: 196 PAAAGIVGAQ---CTGAQNCSSQAAQANYPGMLVWAVASS-ILQGDIPAAG-ATMKAAID 250
Query: 766 CTGNKFHSCVFHPTFPSLLVIGC-------------------YETLELWNMTENKTLTLS 806
+ + F ++ E + +T
Sbjct: 251 GNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPI 310
Query: 807 AHDKLVSSLAASTVNG---MVASASHDKCVKIW 836
++ ++ A+ +G A+++ + + I+
Sbjct: 311 SNGHDSDAIIAAQ-DGASDNYANSAGTEVLDIY 342
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Score = 46.5 bits (109), Expect = 1e-05
Identities = 16/187 (8%), Positives = 34/187 (18%), Gaps = 6/187 (3%)
Query: 558 VESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLE-----EHTQWITDVRFSPSLSRL 612
V S G+ L G D + + + E E +
Sbjct: 64 VHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGYEDRYT 123
Query: 613 ATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKE-DLLCSCDNNSEIRYWSIN 671
+ + + TV + +HP + + + E
Sbjct: 124 IAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKE 183
Query: 672 NGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVC 731
G V + + ++
Sbjct: 184 TGKVLLVNYKDIDNLTVTSIGAAPFLADGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSA 243
Query: 732 WNTSGEY 738
G+
Sbjct: 244 LVDVGKT 250
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Score = 42.6 bits (99), Expect = 2e-04
Identities = 28/277 (10%), Positives = 73/277 (26%), Gaps = 36/277 (12%)
Query: 540 GKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLW------------CTESF 587
+ E ++ + S S + + G + T
Sbjct: 93 KEPTKVAEIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGM 152
Query: 588 TVKSTLEEHTQWITDVRFSPSLSRLATSSAD-RTVRVWDTENPDYSLRTFTGHSTTVMSL 646
TV + + + S + + V + + ++ D T G + +
Sbjct: 153 TVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLADG 212
Query: 647 DFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMR----FQPRLGRILAAAI 702
+ S + + +N++++ + + + R P+ G + + +
Sbjct: 213 GWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKYGPVWSTSH 272
Query: 703 ENYISILDVETQVCRLK---------LQGHKNQVHSVCWNTSGEYLASVS--------DE 745
SI + T LQG + + +L + +
Sbjct: 273 LGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQ 332
Query: 746 LVRVWSIGSGSKGECI--HELSCTGNKFHSCVFHPTF 780
V V+ + + + + V P +
Sbjct: 333 SVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEY 369
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Score = 39.6 bits (91), Expect = 0.001
Identities = 29/231 (12%), Positives = 54/231 (23%), Gaps = 21/231 (9%)
Query: 614 TSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNG 673
T + + D ++ ++ V S LL + I +
Sbjct: 37 TLRDAGQIALVDGDS-KKIVKVIDTGY-AVHISRMSASGRYLLVIGRDAR-IDMIDLWAK 93
Query: 674 SCAGV--FKCQSGATQMRFQPRL---GRILAAA--IENYISILDVETQVCRLKLQGHKNQ 726
V K A + R A +I+D ET + +
Sbjct: 94 EPTKVAEIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMT 153
Query: 727 VHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVI 786
V + ++ I S E I + TG ++ I
Sbjct: 154 VDTQTYHPEPR----------VAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSI 203
Query: 787 GCYETLELWNMTENKTLTLSAHDKLVSSLAASTVNGM-VASASHDKCVKIW 836
G L + ++A + + + A K
Sbjct: 204 GAAPFLADGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPG 254
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Score = 39.6 bits (91), Expect = 0.002
Identities = 18/130 (13%), Positives = 42/130 (32%), Gaps = 22/130 (16%)
Query: 558 VESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLA---- 613
V S DG + G K ++ + L+ ++ P S L
Sbjct: 267 VWSTSHLGDGSISLIGTDPKN---HPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTT 323
Query: 614 ---TSSADRTVRVWDTEN--------PDYSLRTFTGHSTTVMSLDFHPSKEDLLCSC--- 659
+ ++V V+D +N P + V+ +++ +++ S
Sbjct: 324 FNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNG 383
Query: 660 -DNNSEIRYW 668
+++S +
Sbjct: 384 KNDSSALVVV 393
|
| >d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} Length = 333 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Putative isomerase YbhE family: Putative isomerase YbhE domain: Putative isomerase YbhE species: Escherichia coli [TaxId: 562]
Score = 40.2 bits (92), Expect = 8e-04
Identities = 11/67 (16%), Positives = 18/67 (26%), Gaps = 1/67 (1%)
Query: 614 TSSADRTVRVWDT-ENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN 672
S + + VW+ +L V + P K L + + I
Sbjct: 9 ASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAP 68
Query: 673 GSCAGVF 679
A F
Sbjct: 69 DDGALTF 75
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 837 | |||
| d1vyhc1 | 317 | Platelet-activating factor acetylhydrolase IB subu | 100.0 | |
| d1gxra_ | 337 | Groucho/tle1, C-terminal domain {Human (Homo sapie | 100.0 | |
| d1tbga_ | 340 | beta1-subunit of the signal-transducing G protein | 100.0 | |
| d1erja_ | 388 | Tup1, C-terminal domain {Baker's yeast (Saccharomy | 100.0 | |
| d1nr0a1 | 311 | Actin interacting protein 1 {Nematode (Caenorhabdi | 100.0 | |
| d1nr0a2 | 299 | Actin interacting protein 1 {Nematode (Caenorhabdi | 100.0 | |
| d1k8kc_ | 371 | Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur | 100.0 | |
| d1gxra_ | 337 | Groucho/tle1, C-terminal domain {Human (Homo sapie | 100.0 | |
| d1nr0a1 | 311 | Actin interacting protein 1 {Nematode (Caenorhabdi | 100.0 | |
| d1vyhc1 | 317 | Platelet-activating factor acetylhydrolase IB subu | 100.0 | |
| d1nexb2 | 355 | Cdc4 propeller domain {Baker's yeast (Saccharomyce | 100.0 | |
| d2ovrb2 | 342 | F-box/WD repeat-containing protein 7, FBXW7 {Human | 100.0 | |
| d1erja_ | 388 | Tup1, C-terminal domain {Baker's yeast (Saccharomy | 100.0 | |
| d1nexb2 | 355 | Cdc4 propeller domain {Baker's yeast (Saccharomyce | 100.0 | |
| d1k8kc_ | 371 | Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur | 100.0 | |
| d1p22a2 | 293 | F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom | 99.98 | |
| d1pgua1 | 325 | Actin interacting protein 1 {Baker's yeast (Saccha | 99.97 | |
| d1pgua2 | 287 | Actin interacting protein 1 {Baker's yeast (Saccha | 99.97 | |
| d1yfqa_ | 342 | Cell cycle arrest protein BUB3 {Baker's yeast (Sac | 99.97 | |
| d1tbga_ | 340 | beta1-subunit of the signal-transducing G protein | 99.97 | |
| d1nr0a2 | 299 | Actin interacting protein 1 {Nematode (Caenorhabdi | 99.97 | |
| d1pgua1 | 325 | Actin interacting protein 1 {Baker's yeast (Saccha | 99.97 | |
| d1sq9a_ | 393 | Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac | 99.96 | |
| d2ovrb2 | 342 | F-box/WD repeat-containing protein 7, FBXW7 {Human | 99.95 | |
| d1p22a2 | 293 | F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom | 99.94 | |
| d1k32a3 | 360 | Tricorn protease domain 2 {Archaeon Thermoplasma a | 99.94 | |
| d1yfqa_ | 342 | Cell cycle arrest protein BUB3 {Baker's yeast (Sac | 99.94 | |
| d1sq9a_ | 393 | Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac | 99.93 | |
| d1l0qa2 | 301 | Surface layer protein {Archaeon Methanosarcina maz | 99.93 | |
| d1pgua2 | 287 | Actin interacting protein 1 {Baker's yeast (Saccha | 99.92 | |
| d1hzua2 | 426 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.92 | |
| d1l0qa2 | 301 | Surface layer protein {Archaeon Methanosarcina maz | 99.9 | |
| d1qksa2 | 432 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.89 | |
| d1pbyb_ | 337 | Quinohemoprotein amine dehydrogenase B chain {Para | 99.89 | |
| d1k32a3 | 360 | Tricorn protease domain 2 {Archaeon Thermoplasma a | 99.89 | |
| d1jmxb_ | 346 | Quinohemoprotein amine dehydrogenase B chain {Pseu | 99.88 | |
| d1hzua2 | 426 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.86 | |
| d1pbyb_ | 337 | Quinohemoprotein amine dehydrogenase B chain {Para | 99.85 | |
| d1qksa2 | 432 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.85 | |
| d1jmxb_ | 346 | Quinohemoprotein amine dehydrogenase B chain {Pseu | 99.84 | |
| d2madh_ | 373 | Methylamine dehydrogenase, H-chain {Gram negative | 99.83 | |
| d1ri6a_ | 333 | Putative isomerase YbhE {Escherichia coli [TaxId: | 99.82 | |
| d1ri6a_ | 333 | Putative isomerase YbhE {Escherichia coli [TaxId: | 99.81 | |
| d2bbkh_ | 355 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.77 | |
| d2madh_ | 373 | Methylamine dehydrogenase, H-chain {Gram negative | 99.73 | |
| d2bbkh_ | 355 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.67 | |
| d1mdah_ | 368 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.57 | |
| d1qnia2 | 441 | Nitrous oxide reductase, N-terminal domain {Pseudo | 99.56 | |
| d1mdah_ | 368 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.5 | |
| d2bgra1 | 470 | Dipeptidyl peptidase IV/CD26, N-terminal domain {P | 99.48 | |
| d2bgra1 | 470 | Dipeptidyl peptidase IV/CD26, N-terminal domain {P | 99.33 | |
| d2hqsa1 | 269 | TolB, C-terminal domain {Escherichia coli [TaxId: | 99.32 | |
| d1qnia2 | 441 | Nitrous oxide reductase, N-terminal domain {Pseudo | 99.31 | |
| d1jofa_ | 365 | 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu | 99.21 | |
| d1jofa_ | 365 | 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu | 99.21 | |
| d2hqsa1 | 269 | TolB, C-terminal domain {Escherichia coli [TaxId: | 99.19 | |
| d2p4oa1 | 302 | Hypothetical protein All0351 homologue {Nostoc pun | 99.11 | |
| d1rwia_ | 260 | Serine/threonine-protein kinase PknD {Mycobacteriu | 99.09 | |
| d2p4oa1 | 302 | Hypothetical protein All0351 homologue {Nostoc pun | 99.08 | |
| d1pjxa_ | 314 | Diisopropylfluorophosphatase (phosphotriesterase, | 99.05 | |
| d2dg1a1 | 319 | Lactonase Drp35 {Staphylococcus aureus [TaxId: 128 | 99.03 | |
| d1rwia_ | 260 | Serine/threonine-protein kinase PknD {Mycobacteriu | 99.01 | |
| d1q7fa_ | 279 | Brain tumor cg10719-pa {Fruit fly (Drosophila mela | 98.94 | |
| d2dg1a1 | 319 | Lactonase Drp35 {Staphylococcus aureus [TaxId: 128 | 98.91 | |
| d1xfda1 | 465 | Dipeptidyl aminopeptidase-like protein 6, DPP6, N- | 98.88 | |
| d1q7fa_ | 279 | Brain tumor cg10719-pa {Fruit fly (Drosophila mela | 98.88 | |
| d1pjxa_ | 314 | Diisopropylfluorophosphatase (phosphotriesterase, | 98.87 | |
| d1xfda1 | 465 | Dipeptidyl aminopeptidase-like protein 6, DPP6, N- | 98.76 | |
| d2ghsa1 | 295 | Regucalcin {Agrobacterium tumefaciens [TaxId: 358] | 98.71 | |
| d1k32a2 | 281 | Tricorn protease N-terminal domain {Archaeon Therm | 98.6 | |
| d2ghsa1 | 295 | Regucalcin {Agrobacterium tumefaciens [TaxId: 358] | 98.58 | |
| d1k32a2 | 281 | Tricorn protease N-terminal domain {Archaeon Therm | 98.39 | |
| d1fwxa2 | 459 | Nitrous oxide reductase, N-terminal domain {Paraco | 98.33 | |
| d1npea_ | 263 | Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | 98.31 | |
| d1ijqa1 | 266 | Low density lipoprotein (LDL) receptor {Human (Hom | 98.2 | |
| d1k3ia3 | 387 | Galactose oxidase, central domain {Fungi (Fusarium | 98.14 | |
| d1npea_ | 263 | Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | 98.06 | |
| d1ijqa1 | 266 | Low density lipoprotein (LDL) receptor {Human (Hom | 98.0 | |
| d2ad6a1 | 571 | Methanol dehydrogenase, heavy chain {Methylophilus | 97.92 | |
| d1qfma1 | 430 | Prolyl oligopeptidase, N-terminal domain {Pig (Sus | 97.89 | |
| d1utca2 | 327 | Clathrin heavy-chain terminal domain {Rat (Rattus | 97.88 | |
| d1utca2 | 327 | Clathrin heavy-chain terminal domain {Rat (Rattus | 97.85 | |
| d1kv9a2 | 560 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 97.79 | |
| d2ad6a1 | 571 | Methanol dehydrogenase, heavy chain {Methylophilus | 97.72 | |
| d1w6sa_ | 596 | Methanol dehydrogenase, heavy chain {Methylobacter | 97.72 | |
| d1fwxa2 | 459 | Nitrous oxide reductase, N-terminal domain {Paraco | 97.69 | |
| d1kb0a2 | 573 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 97.58 | |
| d1kv9a2 | 560 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 97.51 | |
| d1w6sa_ | 596 | Methanol dehydrogenase, heavy chain {Methylobacter | 97.42 | |
| d1flga_ | 582 | Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax | 97.38 | |
| d1k3ia3 | 387 | Galactose oxidase, central domain {Fungi (Fusarium | 97.31 | |
| d1qfma1 | 430 | Prolyl oligopeptidase, N-terminal domain {Pig (Sus | 97.28 | |
| d1kb0a2 | 573 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 97.26 | |
| d1h6la_ | 353 | Thermostable phytase (3-phytase) {Bacillus amyloli | 97.17 | |
| d1v04a_ | 340 | Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory | 96.98 | |
| d1flga_ | 582 | Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax | 96.67 | |
| d1h6la_ | 353 | Thermostable phytase (3-phytase) {Bacillus amyloli | 95.75 | |
| d2hu7a1 | 313 | Acylamino-acid-releasing enzyme, N-terminal donain | 95.71 | |
| d1v04a_ | 340 | Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory | 95.69 | |
| d1zgka1 | 288 | Kelch-like ECH-associated protein 1, KEAP1 {Human | 95.66 | |
| d1crua_ | 450 | Soluble quinoprotein glucose dehydrogenase {Acinet | 95.12 | |
| d1xipa_ | 381 | Nucleoporin NUP159 {Baker's yeast (Saccharomyces c | 94.85 | |
| d1zgka1 | 288 | Kelch-like ECH-associated protein 1, KEAP1 {Human | 94.4 | |
| d1crua_ | 450 | Soluble quinoprotein glucose dehydrogenase {Acinet | 93.72 | |
| d1xipa_ | 381 | Nucleoporin NUP159 {Baker's yeast (Saccharomyces c | 93.15 | |
| d2hu7a1 | 313 | Acylamino-acid-releasing enzyme, N-terminal donain | 91.19 | |
| d1wp5a_ | 323 | Topoisomerase IV subunit A, ParC, C-terminal domai | 91.12 | |
| d1uuja_ | 76 | Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-te | 90.47 | |
| d1jtdb_ | 273 | beta-lactamase inhibitor protein-II, BLIP-II {Stre | 89.85 | |
| d1jtdb_ | 273 | beta-lactamase inhibitor protein-II, BLIP-II {Stre | 86.04 |
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=1.1e-38 Score=335.31 Aligned_cols=285 Identities=25% Similarity=0.473 Sum_probs=264.0
Q ss_pred EEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcC
Q 003236 548 FQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTE 627 (837)
Q Consensus 548 ~~~l~~H~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~ 627 (837)
..+|++|.+.|++|+|+|++++||+|+.||+|+|||+.+++.+.++.+|...|.+++|++++.++++++.++.+.+|+..
T Consensus 10 ~~~L~GH~~~I~~l~~sp~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (317)
T d1vyhc1 10 KYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQ 89 (317)
T ss_dssp SCEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETT
T ss_pred cEEEcCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCEEEEEeCCCCcEEEEeeeccccccccccccccccccccc
Confidence 35688999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCceeEEeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeeEEec-CCCeeEEEEecCCCEEEEEEcCCeE
Q 003236 628 NPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAIENYI 706 (837)
Q Consensus 628 ~~~~~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~-~~~i~sl~~sp~g~~llags~dg~I 706 (837)
... ....+.+|...+.++.|++++. .+++++.|+.+++||+++++.+..+.. ...+.+++|++++..|++++.|+.|
T Consensus 90 ~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~v 167 (317)
T d1vyhc1 90 GFE-CIRTMHGHDHNVSSVSIMPNGD-HIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTV 167 (317)
T ss_dssp SSC-EEECCCCCSSCEEEEEECSSSS-EEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCE
T ss_pred ccc-cccccccccccceeeeccCCCc-eEEeeccCcceeEeecccceeeeEEccCCCcceeeecccCCCEEEEEeCCCeE
Confidence 755 4677788999999999999977 456888999999999999998888875 5678999999999999999999999
Q ss_pred EEEECCCCeEEEEEcCCCCCEEEEEEcCCC--------------------CEEEEEe-CCeEEEEEcCCCCCceeEEEee
Q 003236 707 SILDVETQVCRLKLQGHKNQVHSVCWNTSG--------------------EYLASVS-DELVRVWSIGSGSKGECIHELS 765 (837)
Q Consensus 707 ~iwDl~s~~~~~~l~~h~~~V~sl~~spdg--------------------~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~ 765 (837)
++|++.++..+..+.+|...+.+++|+|++ .++++++ |+.|++||++++ .++..+.
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~---~~~~~~~ 244 (317)
T d1vyhc1 168 RVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTG---MCLMTLV 244 (317)
T ss_dssp EEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTT---EEEEEEE
T ss_pred EEEeeccceeeEEEecCCCCceEEEEeeccccceeeccccceeeeeccCCceeEeccCCCEEEEEECCCC---cEEEEEe
Confidence 999999999999999999999999998753 4677777 999999999987 7888999
Q ss_pred cCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE-EeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 003236 766 CTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 837 (837)
Q Consensus 766 ~~~~~I~sv~fspdg~~L~sgs~dg~I~IwDl~s~~~~-~l~~h~~~V~sla~spdg~~LaSgs~DG~I~IWd 837 (837)
.|...|.+++|+|++++|++++.|+.|+|||+.+++.+ .+.+|...|++++|+|++++||+|+.||+|+|||
T Consensus 245 ~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~s~s~Dg~i~iWd 317 (317)
T d1vyhc1 245 GHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE 317 (317)
T ss_dssp CCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEECCSSCEEEEEECSSSSCEEEEETTSEEEEEC
T ss_pred CCCCCEEEEEECCCCCEEEEEECCCeEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEeC
Confidence 99999999999999999999999999999999998877 7789999999999999999999999999999998
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=6.3e-38 Score=340.57 Aligned_cols=286 Identities=16% Similarity=0.234 Sum_probs=252.8
Q ss_pred eeeEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCe-----EEEEeccCCCCeEEEEEcCCCCEEEEEeCC
Q 003236 544 TFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFT-----VKSTLEEHTQWITDVRFSPSLSRLATSSAD 618 (837)
Q Consensus 544 ~~~~~~~l~~H~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~-----~~~~l~~h~~~I~~l~fspdg~~Latgs~D 618 (837)
..+.+.++ .|...|+||+|+|+|++||+|+ ||.|+|||+.+.. ......+|.+.|.+++|+|++++|++++.|
T Consensus 41 ~~~~~~~~-~H~~~V~~v~fs~~g~~latg~-dg~V~iWd~~~~~~~~~~~~~~~~~h~~~I~~v~~s~dg~~l~s~~~d 118 (337)
T d1gxra_ 41 HARQINTL-NHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEA 118 (337)
T ss_dssp EEEEEEEE-CCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESS
T ss_pred CceEEEEC-CCCCcEEEEEECCCCCEEEEEE-CCEEEEEEccCCcccceeEEeeecCCCCcEEEEEEcCCCCEEEEeecc
Confidence 33455666 8999999999999999999987 8999999987543 223446799999999999999999999999
Q ss_pred CeEEEEEcCCCCc-eeEEeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeeEEec-CCCeeEEEEecCCCE
Q 003236 619 RTVRVWDTENPDY-SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGR 696 (837)
Q Consensus 619 g~I~IWDl~~~~~-~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~-~~~i~sl~~sp~g~~ 696 (837)
|+|++||+..... ....+..|...|.+++|+|++. ++++++.|+.|++||+.++++...... ...+.+++|++++..
T Consensus 119 g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ 197 (337)
T d1gxra_ 119 STLSIWDLAAPTPRIKAELTSSAPACYALAISPDSK-VCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTK 197 (337)
T ss_dssp SEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSS-EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSE
T ss_pred cccccccccccccccccccccccccccccccccccc-ccccccccccccccccccccccccccccccccccccccccccc
Confidence 9999999976443 3466778999999999999976 666889999999999999988877664 567999999999999
Q ss_pred EEEEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEE
Q 003236 697 ILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCV 775 (837)
Q Consensus 697 llags~dg~I~iwDl~s~~~~~~l~~h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~ 775 (837)
+++++.|+.|++||+++++.+..+. |...|.+++|+|++.+|++++ |+.|++||+++.. . .....|...|.+++
T Consensus 198 ~~~~~~d~~v~i~d~~~~~~~~~~~-~~~~i~~l~~~~~~~~l~~~~~d~~i~i~d~~~~~---~-~~~~~~~~~i~~v~ 272 (337)
T d1gxra_ 198 LWTGGLDNTVRSWDLREGRQLQQHD-FTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPD---K-YQLHLHESCVLSLK 272 (337)
T ss_dssp EEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSC---E-EEECCCSSCEEEEE
T ss_pred cccccccccccccccccceeecccc-cccceEEEEEcccccccceeccccccccccccccc---c-ccccccccccceEE
Confidence 9999999999999999999887775 889999999999999999988 9999999998763 3 34567888999999
Q ss_pred EeCCCCEEEEEEcCCeEEEEECCCCcEEEeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 003236 776 FHPTFPSLLVIGCYETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 837 (837)
Q Consensus 776 fspdg~~L~sgs~dg~I~IwDl~s~~~~~l~~h~~~V~sla~spdg~~LaSgs~DG~I~IWd 837 (837)
|+|++++|++++.|+.|++||+.+++.+....|...|++++|+|++++||+|+.||+|+|||
T Consensus 273 ~s~~g~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~v~~~~~s~d~~~l~t~s~D~~I~vWd 334 (337)
T d1gxra_ 273 FAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKESSSVLSCDISVDDKYIVTGSGDKKATVYE 334 (337)
T ss_dssp ECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECTTSCEEEEEETTSCEEEEE
T ss_pred ECCCCCEEEEEeCCCeEEEEECCCCCEEEEccCCCCEEEEEEeCCCCEEEEEeCCCeEEEEE
Confidence 99999999999999999999999999997788999999999999999999999999999997
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Probab=100.00 E-value=7.2e-37 Score=326.91 Aligned_cols=288 Identities=18% Similarity=0.360 Sum_probs=255.0
Q ss_pred eeEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEE
Q 003236 545 FTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVW 624 (837)
Q Consensus 545 ~~~~~~l~~H~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IW 624 (837)
+...++|+||.+.|+||+|+|++++||+|+.||+|+|||+.+++.+..+..|...|.+++|+|++.+|++++.|+.|++|
T Consensus 45 ~~~~~tL~GH~~~I~~l~~s~~~~~l~sgs~Dg~v~iWd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~~i~~~ 124 (340)
T d1tbga_ 45 MRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIY 124 (340)
T ss_dssp CCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEEECSCSCEEEEEECTTSSEEEEEETTCCEEEE
T ss_pred eeeeEEECCCCCCEEEEEECCCCCEEEEEECCCceeeeecccceeEEEEecccccEEeeEeeccceeeeeecccceeecc
Confidence 44567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EcCCCCc---eeEEeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeeEEec-CCCeeEEEEecCCCEEEEE
Q 003236 625 DTENPDY---SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAA 700 (837)
Q Consensus 625 Dl~~~~~---~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~-~~~i~sl~~sp~g~~llag 700 (837)
+...... ....+.+|...+.......+ . .++.+..+..+..|+............ ...+....+.+....++++
T Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (340)
T d1tbga_ 125 NLKTREGNVRVSRELAGHTGYLSCCRFLDD-N-QIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSG 202 (340)
T ss_dssp ESSSSCSCCCEEEEECCCSSCEEEEEEEET-T-EEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSEEEEE
T ss_pred cccccccccccceecccccccccccccccc-c-ccccccccccccccccccccccccccccceeEeeeccccccceeEEe
Confidence 9875432 34566777777776666654 3 455777789999999887766655543 5678889999999999999
Q ss_pred EcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEe--ecCCCceEEEEEe
Q 003236 701 AIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHEL--SCTGNKFHSCVFH 777 (837)
Q Consensus 701 s~dg~I~iwDl~s~~~~~~l~~h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~--~~~~~~I~sv~fs 777 (837)
+.|+.|++||+++++++..+.+|...|++++|+|++.+|++++ |+.|++||++.. ..+..+ ..+...+.+++|+
T Consensus 203 ~~d~~v~i~d~~~~~~~~~~~~h~~~i~~v~~~p~~~~l~s~s~d~~i~~~~~~~~---~~~~~~~~~~~~~~i~~~~~s 279 (340)
T d1tbga_ 203 ACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRAD---QELMTYSHDNIICGITSVSFS 279 (340)
T ss_dssp ETTTEEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTT---EEEEEECCTTCCSCEEEEEEC
T ss_pred ecCceEEEEECCCCcEEEEEeCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeeccc---ccccccccccccCceEEEEEC
Confidence 9999999999999999999999999999999999999999998 999999999876 444433 4556779999999
Q ss_pred CCCCEEEEEEcCCeEEEEECCCCcEE-EeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 003236 778 PTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 837 (837)
Q Consensus 778 pdg~~L~sgs~dg~I~IwDl~s~~~~-~l~~h~~~V~sla~spdg~~LaSgs~DG~I~IWd 837 (837)
|++.+|++++.|+.|++||+.+++.+ .+.+|.+.|++++|+|++.+||+|+.||.|+|||
T Consensus 280 ~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~H~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd 340 (340)
T d1tbga_ 280 KSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp SSSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred CCCCEEEEEECCCEEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEccCCEEEEeC
Confidence 99999999999999999999999888 7789999999999999999999999999999997
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=1e-36 Score=334.41 Aligned_cols=283 Identities=28% Similarity=0.442 Sum_probs=246.7
Q ss_pred cCCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEec------------------cCCCCeEEEEEcCCCCEEE
Q 003236 552 PASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLE------------------EHTQWITDVRFSPSLSRLA 613 (837)
Q Consensus 552 ~~H~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~------------------~h~~~I~~l~fspdg~~La 613 (837)
.+|++.|+||+|+|||++||+|+ |++|+|||+.+++.+..+. .|...|++++|+|++++|+
T Consensus 59 ~~H~~~V~~l~fs~dg~~lasg~-d~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~~l~ 137 (388)
T d1erja_ 59 LDHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLA 137 (388)
T ss_dssp EECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEE
T ss_pred CCCCCcEEEEEECCCCCEEEEEe-CCeEEEEEecccceEeeecccccccccccccccccccCCCCCEEEEEECCCCCcce
Confidence 37999999999999999999986 8999999999988876654 4667799999999999999
Q ss_pred EEeCCCeEEEEEcCCCCceeEEeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeeEEecCCCeeEEEEec-
Q 003236 614 TSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQP- 692 (837)
Q Consensus 614 tgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~~~~i~sl~~sp- 692 (837)
+|+.||.|++||...++ .+..+.+|...|.+++|++++. .+++++.++.|++||+++..............++.+.+
T Consensus 138 s~~~dg~v~i~~~~~~~-~~~~~~~h~~~v~~~~~~~~~~-~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 215 (388)
T d1erja_ 138 TGAEDRLIRIWDIENRK-IVMILQGHEQDIYSLDYFPSGD-KLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPG 215 (388)
T ss_dssp EEETTSCEEEEETTTTE-EEEEECCCSSCEEEEEECTTSS-EEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECST
T ss_pred ecccccccccccccccc-cccccccccccccccccccccc-cccccccceeeeeeeccccccccccccccccccccccCC
Confidence 99999999999999765 4777888999999999999876 55688889999999999999888888877877777776
Q ss_pred CCCEEEEEEcCCeEEEEECCCCeEEEEE-------cCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCC-------
Q 003236 693 RLGRILAAAIENYISILDVETQVCRLKL-------QGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSK------- 757 (837)
Q Consensus 693 ~g~~llags~dg~I~iwDl~s~~~~~~l-------~~h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~------- 757 (837)
++.+|++++.|+.|++||.+++.....+ .+|...|++++|+|++.+|++++ |+.|++||+++...
T Consensus 216 ~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~ 295 (388)
T d1erja_ 216 DGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTP 295 (388)
T ss_dssp TCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC------------
T ss_pred CCCeEEEEcCCCeEEEeecccCccceeeccccccccCCCCCEEEEEECCCCCEEEEEECCCcEEEEeccCCccccccccc
Confidence 6778899999999999999998776654 35888999999999999999998 99999999986532
Q ss_pred --ceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE-EeccCCCCeeEEEE------eCCCCEEEEEE
Q 003236 758 --GECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAA------STVNGMVASAS 828 (837)
Q Consensus 758 --~~~i~~~~~~~~~I~sv~fspdg~~L~sgs~dg~I~IwDl~s~~~~-~l~~h~~~V~sla~------spdg~~LaSgs 828 (837)
..+......|...|.+++|+|++.+|++++.|+.|++||+.+++.+ .+.+|.+.|.++++ +|++.+||||+
T Consensus 296 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~l~~H~~~V~~~~~~~~~~~spd~~~l~s~s 375 (388)
T d1erja_ 296 NSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGS 375 (388)
T ss_dssp ---CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSCTTCTTCEEEEEEE
T ss_pred cccceeeecccccceEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEeCCCCCEEEEEEecCcccCCCCCEEEEEe
Confidence 2344556678889999999999999999999999999999999987 78899999999975 56889999999
Q ss_pred CCCcEEEeC
Q 003236 829 HDKCVKIWK 837 (837)
Q Consensus 829 ~DG~I~IWd 837 (837)
.||+|+|||
T Consensus 376 ~Dg~I~iW~ 384 (388)
T d1erja_ 376 GDCKARIWK 384 (388)
T ss_dssp TTSEEEEEE
T ss_pred CCCEEEEEe
Confidence 999999996
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=100.00 E-value=3.3e-35 Score=317.06 Aligned_cols=281 Identities=16% Similarity=0.214 Sum_probs=238.7
Q ss_pred CCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCce
Q 003236 553 ASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYS 632 (837)
Q Consensus 553 ~H~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~~~~~ 632 (837)
.+.+.+.+++++|+|+.||.++ ++.|.+||+.+......+.+|.+.|++++|+|++++|++|+.||+|+|||+.+....
T Consensus 15 ~~r~~~~~~a~~~~g~~l~~~~-~~~v~i~~~~~~~~~~~~~~H~~~v~~~~~sp~g~~latg~~dg~i~iwd~~~~~~~ 93 (311)
T d1nr0a1 15 TARGTAVVLGNTPAGDKIQYCN-GTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHI 93 (311)
T ss_dssp CCTTCCCCCEECTTSSEEEEEE-TTEEEEEETTCSSCCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCC
T ss_pred CCCCCeEEEEEcCCCCEEEEEe-CCEEEEEECCCCceeEEEcCCCCCEEEEEEeCCCCeEeccccCceEeeeeeeccccc
Confidence 4455677899999999999986 567999999999999999999999999999999999999999999999999987653
Q ss_pred -eEEeeccccceEEEEEcCCCCeEEEEEe-CCCcEEEEECCCCeeeeEEec-CCCeeEEEEecCCCE-EEEEEcCCeEEE
Q 003236 633 -LRTFTGHSTTVMSLDFHPSKEDLLCSCD-NNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGR-ILAAAIENYISI 708 (837)
Q Consensus 633 -~~~~~~h~~~V~sl~fspdg~~llasgs-~Dg~I~vwDl~t~~~i~~~~~-~~~i~sl~~sp~g~~-llags~dg~I~i 708 (837)
...+..|...|.+++|+|++..+++++. .+..+++|++++++....+.. ...|.+++|+|++.+ +++++.|+.|++
T Consensus 94 ~~~~~~~~~~~v~~v~~s~d~~~l~~~~~~~~~~~~v~~~~~~~~~~~l~~h~~~v~~v~~~~~~~~~l~sgs~d~~i~i 173 (311)
T d1nr0a1 94 LKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAI 173 (311)
T ss_dssp EEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTTCCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEE
T ss_pred cccccccccCccccccccccccccccccccccccccccccccccccccccccccccccccccccceeeeccccccccccc
Confidence 3557889999999999999875554332 356799999999988877764 456999999999885 677889999999
Q ss_pred EECCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEe-------ecCCCceEEEEEeCCC
Q 003236 709 LDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHEL-------SCTGNKFHSCVFHPTF 780 (837)
Q Consensus 709 wDl~s~~~~~~l~~h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~-------~~~~~~I~sv~fspdg 780 (837)
||+++++....+..|...|++++|+|++++|++++ |+.|++||+.++. .+..+ .+|...|.+++|+|++
T Consensus 174 ~d~~~~~~~~~~~~~~~~i~~v~~~p~~~~l~~~~~d~~v~~~d~~~~~---~~~~~~~~~~~~~~h~~~V~~~~~s~~~ 250 (311)
T d1nr0a1 174 FEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGT---KTGVFEDDSLKNVAHSGSVFGLTWSPDG 250 (311)
T ss_dssp EETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCC---EEEECBCTTSSSCSSSSCEEEEEECTTS
T ss_pred ccccccccccccccccccccccccCcccccccccccccccccccccccc---ccccccccccccccccccccccccCCCC
Confidence 99999999999999999999999999999999998 9999999998873 33333 3467889999999999
Q ss_pred CEEEEEEcCCeEEEEECCCCcEE-EeccCCC-CeeEEEEeCCCCEEEEEECCCcEEEeC
Q 003236 781 PSLLVIGCYETLELWNMTENKTL-TLSAHDK-LVSSLAASTVNGMVASASHDKCVKIWK 837 (837)
Q Consensus 781 ~~L~sgs~dg~I~IwDl~s~~~~-~l~~h~~-~V~sla~spdg~~LaSgs~DG~I~IWd 837 (837)
.+|++++.|+.|+|||+.+++++ .+..|.. ....+.+.+++.+|++++.||.|++||
T Consensus 251 ~~l~tgs~Dg~v~iwd~~t~~~~~~l~~~~~~~~~~~~~~~~~~~l~s~s~dG~i~~wd 309 (311)
T d1nr0a1 251 TKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVN 309 (311)
T ss_dssp SEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEE
T ss_pred CEEEEEeCCCeEEEEECCCCcEEEEEECCCCccceEEEEEecCCEEEEEECCCEEEEEe
Confidence 99999999999999999999987 4444432 233344444567799999999999997
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=100.00 E-value=3.2e-35 Score=311.54 Aligned_cols=284 Identities=15% Similarity=0.166 Sum_probs=234.7
Q ss_pred EEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEec-cCCCCeEEEEEcCCCCEEEEEeCCCeEEEEE
Q 003236 547 EFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLE-EHTQWITDVRFSPSLSRLATSSADRTVRVWD 625 (837)
Q Consensus 547 ~~~~l~~H~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~-~h~~~I~~l~fspdg~~Latgs~Dg~I~IWD 625 (837)
..+++.||.+.|++|+|+||+++||+|+.||+|+|||+++++.+..+. .|...|++++|+|++. +++++.|+.|++|+
T Consensus 4 ~~~~~~GH~~~V~~l~~s~dg~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~h~~~v~~v~~~~~g~-~~~~~~d~~v~~~~ 82 (299)
T d1nr0a2 4 IDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGD-LFTVSWDDHLKVVP 82 (299)
T ss_dssp EEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSC-EEEEETTTEEEEEC
T ss_pred cceEcCCCCCCcEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCCcEEEEEeeccce-eecccceeeEEEec
Confidence 357889999999999999999999999999999999999999988874 6899999999999986 55667899999999
Q ss_pred cCCCCc--eeEEeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeeEEecCCCeeEEEEecCCCEEEEEEcC
Q 003236 626 TENPDY--SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIE 703 (837)
Q Consensus 626 l~~~~~--~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~~~~i~sl~~sp~g~~llags~d 703 (837)
...... .......+...+.+++|++++..++ ++ .++.+++|+... .........+.+++|+|++..+++++.|
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~-~~-~~~~i~~~~~~~---~~~~~~~~~~~~~~~s~~~~~l~~g~~d 157 (299)
T d1nr0a2 83 AGGSGVDSSKAVANKLSSQPLGLAVSADGDIAV-AA-CYKHIAIYSHGK---LTEVPISYNSSCVALSNDKQFVAVGGQD 157 (299)
T ss_dssp SSSSSSCTTSCCEEECSSCEEEEEECTTSSCEE-EE-ESSEEEEEETTE---EEEEECSSCEEEEEECTTSCEEEEEETT
T ss_pred cCCcccccccccccccccccccccccccccccc-cc-cccccccccccc---cccccccccccccccccccccccccccc
Confidence 875432 1233455778899999999987444 33 367899999543 2333445678999999999999999999
Q ss_pred CeEEEEECCCCeEEE-EEcCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCC
Q 003236 704 NYISILDVETQVCRL-KLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFP 781 (837)
Q Consensus 704 g~I~iwDl~s~~~~~-~l~~h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fspdg~ 781 (837)
+.|++||++++.... ....|...|++++|+|++.+|++++ |+.|++||+.++........+..|...|.+++|+|++.
T Consensus 158 g~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~ 237 (299)
T d1nr0a2 158 SKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNV 237 (299)
T ss_dssp SEEEEEEEETTEEEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSSCEEEEEECTTSS
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 999999998876543 3446899999999999999999998 99999999988754445556677889999999999999
Q ss_pred EEEEEEcCCeEEEEECCCCcEE---EeccC-CCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 003236 782 SLLVIGCYETLELWNMTENKTL---TLSAH-DKLVSSLAASTVNGMVASASHDKCVKIWK 837 (837)
Q Consensus 782 ~L~sgs~dg~I~IwDl~s~~~~---~l~~h-~~~V~sla~spdg~~LaSgs~DG~I~IWd 837 (837)
+|++++.|+.|++||+.++... ....| ...|.++.| +++.+|++|+.||.|+|||
T Consensus 238 ~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~l~s~s~D~~i~iWd 296 (299)
T d1nr0a2 238 RLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIW-LNETTIVSAGQDSNIKFWN 296 (299)
T ss_dssp EEEEEETTSCEEEEETTCTTSCCEEETTSSTTSCEEEEEE-EETTEEEEEETTSCEEEEE
T ss_pred ceEEEcCCCEEEEEECCCCCcceEEEecCCCCCcEEEEEE-CCCCEEEEEeCCCEEEEEe
Confidence 9999999999999999876532 33344 456666655 5678999999999999997
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Probab=100.00 E-value=3.7e-34 Score=315.43 Aligned_cols=279 Identities=16% Similarity=0.197 Sum_probs=231.8
Q ss_pred CCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCe--EEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCc
Q 003236 554 STSKVESCHFSPDGKLLATGGHDKKAVLWCTESFT--VKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDY 631 (837)
Q Consensus 554 H~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~--~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~~~~ 631 (837)
+.++|+|++|+|||++||+|+.|+.|+|||+.+++ .+..+.+|.+.|++|+|+|++++|++|+.|++|+|||+.+...
T Consensus 6 ~~~pIt~~~~s~dg~~la~~~~~~~i~iw~~~~~~~~~~~~l~gH~~~V~~l~fsp~~~~l~s~s~D~~i~vWd~~~~~~ 85 (371)
T d1k8kc_ 6 LVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTW 85 (371)
T ss_dssp CSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEE
T ss_pred CCCCeEEEEECCCCCEEEEEeCCCEEEEEECCCCCEEEEEEecCCCCCEEEEEECCCCCEEEEEECCCeEEEEeeccccc
Confidence 34789999999999999999999999999998765 5677889999999999999999999999999999999987653
Q ss_pred -eeEEeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeeEEe-----cCCCeeEEEEecCCCEEEEEEcCCe
Q 003236 632 -SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK-----CQSGATQMRFQPRLGRILAAAIENY 705 (837)
Q Consensus 632 -~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~-----~~~~i~sl~~sp~g~~llags~dg~ 705 (837)
....+.+|...|.+++|+|++. .+++++.|+.|++|++.......... +...|.+++|+|++.+|++++.|+.
T Consensus 86 ~~~~~~~~~~~~v~~i~~~p~~~-~l~~~s~d~~i~i~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~D~~ 164 (371)
T d1k8kc_ 86 KPTLVILRINRAARCVRWAPNEK-KFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFK 164 (371)
T ss_dssp EEEEECCCCSSCEEEEEECTTSS-EEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTSC
T ss_pred ccccccccccccccccccccccc-cceeecccCcceeeeeecccccccccccccccccccccccccccccceeccccCcE
Confidence 2445678899999999999976 56688899999999987655433222 2467999999999999999999999
Q ss_pred EEEEECCC------------------CeEEEEEcCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeec
Q 003236 706 ISILDVET------------------QVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSC 766 (837)
Q Consensus 706 I~iwDl~s------------------~~~~~~l~~h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~ 766 (837)
|++||... +..+.....|...|.+++|+|++.+|++++ |+.|++||+.++ ..+..+..
T Consensus 165 v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~---~~~~~~~~ 241 (371)
T d1k8kc_ 165 CRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKK---MAVATLAS 241 (371)
T ss_dssp EEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGT---TEEEEEEC
T ss_pred EEEEeeccCccccccccccccccccceeeeeeccCccCcEEEEEeecccccccccccCCcceEEeeecc---cceeeeec
Confidence 99999764 245667778999999999999999999998 999999999887 67888888
Q ss_pred CCCceEEEEEeCCCCEEEEEEcCCeEEEEE--CCCCcEE----------------------------------------E
Q 003236 767 TGNKFHSCVFHPTFPSLLVIGCYETLELWN--MTENKTL----------------------------------------T 804 (837)
Q Consensus 767 ~~~~I~sv~fspdg~~L~sgs~dg~I~IwD--l~s~~~~----------------------------------------~ 804 (837)
|..+|.+++|+|++.+|+ ++.|+.+++|+ ...+... .
T Consensus 242 ~~~~v~s~~fs~d~~~la-~g~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (371)
T d1k8kc_ 242 ETLPLLAVTFITESSLVA-AGHDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGL 320 (371)
T ss_dssp SSCCEEEEEEEETTEEEE-EETTSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCCC---------CCC
T ss_pred ccccceeeeecCCCCEEE-EEcCCceEEEEeeCCCceEEEeeeecCccccccccccceeeEecccceeEEecccccccee
Confidence 999999999999997665 55577655554 3322211 0
Q ss_pred eccCCCCeeEEEEeCCC----CEEEEEECCCcEEEeC
Q 003236 805 LSAHDKLVSSLAASTVN----GMVASASHDKCVKIWK 837 (837)
Q Consensus 805 l~~h~~~V~sla~spdg----~~LaSgs~DG~I~IWd 837 (837)
...|.+.|+++++.+.+ ..|+|++.||.|+|||
T Consensus 321 ~~~H~~~I~~i~~~~~~~~~~~~~~T~g~Dg~v~iW~ 357 (371)
T d1k8kc_ 321 DSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWD 357 (371)
T ss_dssp SSSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEE
T ss_pred cccccCCEEEEEEeCCCCcceEEEEEEcCCCeEEEEe
Confidence 01388899999998755 3699999999999997
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1.2e-33 Score=306.48 Aligned_cols=275 Identities=17% Similarity=0.287 Sum_probs=238.2
Q ss_pred ccccCCCeEEcccCCCceEEeecCCCCCCCCccccccccCCCeeeeEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEE
Q 003236 501 QLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAV 580 (837)
Q Consensus 501 ~l~~~~~~v~~Gs~D~~v~~w~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~H~~~V~sl~fSpdg~~Lasgs~Dg~I~ 580 (837)
.+.+...++++|+ |+.|++|........ .........+|.+.|.+|+|+||+++|++|+.||.|+
T Consensus 58 ~fs~~g~~latg~-dg~V~iWd~~~~~~~--------------~~~~~~~~~~h~~~I~~v~~s~dg~~l~s~~~dg~i~ 122 (337)
T d1gxra_ 58 TISNPTRHVYTGG-KGCVKVWDISHPGNK--------------SPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLS 122 (337)
T ss_dssp EECSSSSEEEEEC-BSEEEEEETTSTTCC--------------SCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEE
T ss_pred EECCCCCEEEEEE-CCEEEEEEccCCccc--------------ceeEEeeecCCCCcEEEEEEcCCCCEEEEeecccccc
Confidence 3444558899998 899999976543211 1112334568999999999999999999999999999
Q ss_pred EEeCCC--CeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeEEeeccccceEEEEEcCCCCeEEEE
Q 003236 581 LWCTES--FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCS 658 (837)
Q Consensus 581 VWd~~t--~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~sl~fspdg~~llas 658 (837)
+||+.. .+....+..|...|.+++|+|++.++++++.|+.|++|++.+++ ......+|...|.+++|++++. .+++
T Consensus 123 iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~~~~~~~-~~~~~~~~~~~v~~l~~s~~~~-~~~~ 200 (337)
T d1gxra_ 123 IWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQT-LVRQFQGHTDGASCIDISNDGT-KLWT 200 (337)
T ss_dssp EEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTE-EEEEECCCSSCEEEEEECTTSS-EEEE
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccc-cccccccccccccccccccccc-cccc
Confidence 999874 45667788899999999999999999999999999999999865 4677888999999999999976 5568
Q ss_pred EeCCCcEEEEECCCCeeeeEEecCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEcCCCCE
Q 003236 659 CDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEY 738 (837)
Q Consensus 659 gs~Dg~I~vwDl~t~~~i~~~~~~~~i~sl~~sp~g~~llags~dg~I~iwDl~s~~~~~~l~~h~~~V~sl~~spdg~~ 738 (837)
++.|+.|++||+++++.+..+.+...|.+++|+|++..+++++.|+.|++||++++... ....|...|++++|+|++++
T Consensus 201 ~~~d~~v~i~d~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~i~d~~~~~~~-~~~~~~~~i~~v~~s~~g~~ 279 (337)
T d1gxra_ 201 GGLDNTVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKY-QLHLHESCVLSLKFAYCGKW 279 (337)
T ss_dssp EETTSEEEEEETTTTEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEE-EECCCSSCEEEEEECTTSSE
T ss_pred ccccccccccccccceeecccccccceEEEEEcccccccceeccccccccccccccccc-cccccccccceEEECCCCCE
Confidence 88899999999999999999999999999999999999999999999999999988765 45569999999999999999
Q ss_pred EEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEEC
Q 003236 739 LASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNM 797 (837)
Q Consensus 739 Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fspdg~~L~sgs~dg~I~IwDl 797 (837)
|++++ |+.|++||+.++ ..+..+. |...|.+++|+|++++|++++.|+.|+|||+
T Consensus 280 l~s~s~Dg~i~iwd~~~~---~~~~~~~-~~~~v~~~~~s~d~~~l~t~s~D~~I~vWdl 335 (337)
T d1gxra_ 280 FVSTGKDNLLNAWRTPYG---ASIFQSK-ESSSVLSCDISVDDKYIVTGSGDKKATVYEV 335 (337)
T ss_dssp EEEEETTSEEEEEETTTC---CEEEEEE-CSSCEEEEEECTTSCEEEEEETTSCEEEEEE
T ss_pred EEEEeCCCeEEEEECCCC---CEEEEcc-CCCCEEEEEEeCCCCEEEEEeCCCeEEEEEE
Confidence 99998 999999999987 4555543 6788999999999999999999999999996
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=100.00 E-value=5.5e-33 Score=299.45 Aligned_cols=247 Identities=17% Similarity=0.241 Sum_probs=214.8
Q ss_pred EEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeE--EEEeccCCCCeEEEEEcCCCCEEEEEeC--CCeEEE
Q 003236 548 FQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTV--KSTLEEHTQWITDVRFSPSLSRLATSSA--DRTVRV 623 (837)
Q Consensus 548 ~~~l~~H~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~--~~~l~~h~~~I~~l~fspdg~~Latgs~--Dg~I~I 623 (837)
...+.+|.+.|+|++|+|+|++||+|+.||+|+|||+.+... ...+..|.+.|.+++|+|++++|++++. +..++|
T Consensus 51 ~~~~~~H~~~v~~~~~sp~g~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~~~~~~~~~v 130 (311)
T d1nr0a1 51 TEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHV 130 (311)
T ss_dssp CEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEE
T ss_pred eEEEcCCCCCEEEEEEeCCCCeEeccccCceEeeeeeeccccccccccccccCccccccccccccccccccccccccccc
Confidence 345689999999999999999999999999999999987653 4567889999999999999999999986 456999
Q ss_pred EEcCCCCceeEEeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeeEEec-CCCeeEEEEecCCCEEEEEEc
Q 003236 624 WDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAI 702 (837)
Q Consensus 624 WDl~~~~~~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~-~~~i~sl~~sp~g~~llags~ 702 (837)
|++++.+ ....+.+|...|.+++|+|++..+|++|+.|+.|++||++++++...+.. ...|.++.|+|++.++++++.
T Consensus 131 ~~~~~~~-~~~~l~~h~~~v~~v~~~~~~~~~l~sgs~d~~i~i~d~~~~~~~~~~~~~~~~i~~v~~~p~~~~l~~~~~ 209 (311)
T d1nr0a1 131 FLFDTGT-SNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGG 209 (311)
T ss_dssp EETTTCC-BCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEET
T ss_pred ccccccc-ccccccccccccccccccccceeeecccccccccccccccccccccccccccccccccccCccccccccccc
Confidence 9999865 46778899999999999999998899999999999999999998888765 567999999999999999999
Q ss_pred CCeEEEEECCCCeEEEEEc-------CCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCC-ceEE
Q 003236 703 ENYISILDVETQVCRLKLQ-------GHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGN-KFHS 773 (837)
Q Consensus 703 dg~I~iwDl~s~~~~~~l~-------~h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~-~I~s 773 (837)
|+.|++||+.++..+..+. +|...|++++|+|++.+|++++ |+.|+|||++++ +++.++..+.. ....
T Consensus 210 d~~v~~~d~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~tgs~Dg~v~iwd~~t~---~~~~~l~~~~~~~~~~ 286 (311)
T d1nr0a1 210 DGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATL---KVEKTIPVGTRIEDQQ 286 (311)
T ss_dssp TSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTT---EEEEEEECCSSGGGCE
T ss_pred cccccccccccccccccccccccccccccccccccccCCCCCEEEEEeCCCeEEEEECCCC---cEEEEEECCCCccceE
Confidence 9999999999988777664 4788999999999999999999 999999999987 67777765543 2233
Q ss_pred EEEeCCCCEEEEEEcCCeEEEEECC
Q 003236 774 CVFHPTFPSLLVIGCYETLELWNMT 798 (837)
Q Consensus 774 v~fspdg~~L~sgs~dg~I~IwDl~ 798 (837)
+.+.+++..|++++.||.|++||.+
T Consensus 287 ~~~~~~~~~l~s~s~dG~i~~wd~d 311 (311)
T d1nr0a1 287 LGIIWTKQALVSISANGFINFVNPE 311 (311)
T ss_dssp EEEEECSSCEEEEETTCCEEEEETT
T ss_pred EEEEecCCEEEEEECCCEEEEEeCC
Confidence 4445556679999999999999974
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=6.3e-32 Score=283.30 Aligned_cols=267 Identities=24% Similarity=0.452 Sum_probs=241.7
Q ss_pred CCeEEcccCCCceEEeecCCCCCCCCccccccccCCCeeeeEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCC
Q 003236 506 DRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTE 585 (837)
Q Consensus 506 ~~~v~~Gs~D~~v~~w~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~H~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~ 585 (837)
..++++|+.|++|++|..... ..+..+.+|.+.|.+++|++++.++++++.++.+.+|+..
T Consensus 29 ~~~l~s~s~Dg~i~iWd~~~~-------------------~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (317)
T d1vyhc1 29 FSVMVSASEDATIKVWDYETG-------------------DFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQ 89 (317)
T ss_dssp SSEEEEEESSSCEEEEETTTC-------------------CCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETT
T ss_pred CCEEEEEeCCCeEEEEECCCC-------------------CEEEEEeCCCCcEEEEeeeccccccccccccccccccccc
Confidence 368999999999999965432 2345678999999999999999999999999999999999
Q ss_pred CCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeEEeeccccceEEEEEcCCCCeEEEEEeCCCcE
Q 003236 586 SFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEI 665 (837)
Q Consensus 586 t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I 665 (837)
..+....+..|...+.++.|++++..+++++.|+.+++||+.++. .+..+.+|...+.+++|++++. +|++++.|+.|
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~d~~v 167 (317)
T d1vyhc1 90 GFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGY-CVKTFTGHREWVRMVRPNQDGT-LIASCSNDQTV 167 (317)
T ss_dssp SSCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCC-EEEEEECCSSCEEEEEECTTSS-EEEEEETTSCE
T ss_pred ccccccccccccccceeeeccCCCceEEeeccCcceeEeecccce-eeeEEccCCCcceeeecccCCC-EEEEEeCCCeE
Confidence 999999999999999999999999999999999999999999876 4788889999999999999976 67799999999
Q ss_pred EEEECCCCeeeeEEec-CCCeeEEEEecC--------------------CCEEEEEEcCCeEEEEECCCCeEEEEEcCCC
Q 003236 666 RYWSINNGSCAGVFKC-QSGATQMRFQPR--------------------LGRILAAAIENYISILDVETQVCRLKLQGHK 724 (837)
Q Consensus 666 ~vwDl~t~~~i~~~~~-~~~i~sl~~sp~--------------------g~~llags~dg~I~iwDl~s~~~~~~l~~h~ 724 (837)
++|++.+++.+..+.. ...+.++.|+|+ +..+++++.|+.|++||+++++++..+.+|.
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~ 247 (317)
T d1vyhc1 168 RVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHD 247 (317)
T ss_dssp EEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEEECCS
T ss_pred EEEeeccceeeEEEecCCCCceEEEEeeccccceeeccccceeeeeccCCceeEeccCCCEEEEEECCCCcEEEEEeCCC
Confidence 9999999988887764 456777777765 3468899999999999999999999999999
Q ss_pred CCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEE
Q 003236 725 NQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWN 796 (837)
Q Consensus 725 ~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fspdg~~L~sgs~dg~I~IwD 796 (837)
..|.+++|+|++++|++++ ||.|+|||+.++ +++..+..|...|++++|+|++++|++++.|++|+|||
T Consensus 248 ~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~---~~~~~~~~h~~~V~~~~~s~~~~~l~s~s~Dg~i~iWd 317 (317)
T d1vyhc1 248 NWVRGVLFHSGGKFILSCADDKTLRVWDYKNK---RCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE 317 (317)
T ss_dssp SCEEEEEECSSSSCEEEEETTTEEEEECCTTS---CCCEEEECCSSCEEEEEECSSSSCEEEEETTSEEEEEC
T ss_pred CCEEEEEECCCCCEEEEEECCCeEEEEECCCC---cEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEeC
Confidence 9999999999999999998 999999999987 67788889999999999999999999999999999997
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=1e-31 Score=287.04 Aligned_cols=300 Identities=18% Similarity=0.282 Sum_probs=239.0
Q ss_pred CCCeEEcccCCCceEEeecCCCCCCCCccccccccCCCeeeeEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEeC
Q 003236 505 MDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCT 584 (837)
Q Consensus 505 ~~~~v~~Gs~D~~v~~w~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~H~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~ 584 (837)
.++++++|+.|++|++|..... ..+..+.+|.+.|++|+|++++ +|++|+.|++|++|+.
T Consensus 22 ~~~~l~tgs~Dg~i~vWd~~~~-------------------~~~~~l~~H~~~V~~l~~s~~~-~l~s~s~D~~i~iw~~ 81 (355)
T d1nexb2 22 EDNYVITGADDKMIRVYDSINK-------------------KFLLQLSGHDGGVWALKYAHGG-ILVSGSTDRTVRVWDI 81 (355)
T ss_dssp ETTEEEEEETTTEEEEEETTTT-------------------EEEEEEECCSSCEEEEEEETTT-EEEEEETTCCEEEEET
T ss_pred CCCEEEEEeCCCeEEEEECCCC-------------------cEEEEEECCCCCEEEEEEcCCC-EEEEEecccccccccc
Confidence 3478999999999999965332 3467788999999999999864 8999999999999999
Q ss_pred CCCeEEEEeccCC--CCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCce----------------------eEEeeccc
Q 003236 585 ESFTVKSTLEEHT--QWITDVRFSPSLSRLATSSADRTVRVWDTENPDYS----------------------LRTFTGHS 640 (837)
Q Consensus 585 ~t~~~~~~l~~h~--~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~~~~~----------------------~~~~~~h~ 640 (837)
...+.......+. ..+..+.+.+++.++++++.|+.|++||+.+.... ......|.
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (355)
T d1nexb2 82 KKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHM 161 (355)
T ss_dssp TTTEEEEEECCCSSCEEEEEEEEETTEEEEEEEETTSEEEEEECCC-----------CCCEEESCTTTCTTEEEEEECCS
T ss_pred cccccccccccccccccccccccccccceeeeecCCCcEEEEEccCCceeccccccceeccceeccccccceeeeeeecc
Confidence 9988876665433 34556777889999999999999999998764321 11222344
Q ss_pred cceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeeEEec-CCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEE
Q 003236 641 TTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLK 719 (837)
Q Consensus 641 ~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~-~~~i~sl~~sp~g~~llags~dg~I~iwDl~s~~~~~~ 719 (837)
..+.+... ++ .+++++..|+.|++||+.+++.+..... ...+.++.+++++..+++++.|+.|++||++++..+..
T Consensus 162 ~~v~~~~~--~~-~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~ 238 (355)
T d1nexb2 162 ASVRTVSG--HG-NIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYT 238 (355)
T ss_dssp SCEEEEEE--ET-TEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTCCEEEE
T ss_pred cccccccc--cc-ceeeeecccceeeeeecccccceeeeeccccccccccccccceeeecccccceEEeeeccccccccc
Confidence 44444443 33 3677888999999999999998877764 56788999999999999999999999999999999999
Q ss_pred EcCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEE-EEeCCCCEEEEEEcCCeEEEEEC
Q 003236 720 LQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSC-VFHPTFPSLLVIGCYETLELWNM 797 (837)
Q Consensus 720 l~~h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv-~fspdg~~L~sgs~dg~I~IwDl 797 (837)
+.+|...|.+++|+ +++|++++ ||.|++||+.+.. . .+..|...+..+ ++++++.+ ++++.|+.|+|||+
T Consensus 239 ~~~h~~~v~~~~~~--~~~l~~~~~dg~i~iwd~~~~~---~--~~~~~~~~~~~~~~~~~~~~~-l~~g~d~~i~vwd~ 310 (355)
T d1nexb2 239 LQGHTALVGLLRLS--DKFLVSAAADGSIRGWDANDYS---R--KFSYHHTNLSAITTFYVSDNI-LVSGSENQFNIYNL 310 (355)
T ss_dssp ECCCSSCCCEEEEC--SSEEEEECTTSEEEEEETTTCC---E--EEEEECTTCCCCCEEEECSSE-EEEEETTEEEEEET
T ss_pred cccccccccccccc--cceeeeeecccccccccccccc---e--ecccccCCceEEEEEcCCCCE-EEEEeCCEEEEEEC
Confidence 99999999999996 46888888 9999999998763 2 233344555554 45666664 55566899999999
Q ss_pred CCCcEE--EeccCCCCeeEEEEeCCCCEEEEEECCCcEEEe
Q 003236 798 TENKTL--TLSAHDKLVSSLAASTVNGMVASASHDKCVKIW 836 (837)
Q Consensus 798 ~s~~~~--~l~~h~~~V~sla~spdg~~LaSgs~DG~I~IW 836 (837)
++++++ .+.+|...|++++|+|+ .+|++++.||.++||
T Consensus 311 ~tg~~~~~~~~~~~~~V~~v~~~~~-~~~~~~s~dg~~~l~ 350 (355)
T d1nexb2 311 RSGKLVHANILKDADQIWSVNFKGK-TLVAAVEKDGQSFLE 350 (355)
T ss_dssp TTCCBCCSCTTTTCSEEEEEEEETT-EEEEEEESSSCEEEE
T ss_pred CCCCEEEEEecCCCCCEEEEEEcCC-eEEEEEECCCcEEEE
Confidence 999987 45789999999999986 578889999997776
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=9.5e-32 Score=285.65 Aligned_cols=283 Identities=18% Similarity=0.302 Sum_probs=221.9
Q ss_pred eeEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEE
Q 003236 545 FTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVW 624 (837)
Q Consensus 545 ~~~~~~l~~H~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IW 624 (837)
+....+|++|.+.|.+ +++++|++||||+.||+|+|||+.+++++.++.+|...|.+++|+++ +|++++.|+.+++|
T Consensus 6 ~~~~~~l~GH~~~V~s-~~~~~g~~l~sgs~Dg~i~vWd~~~~~~~~~~~~h~~~V~~v~~~~~--~l~s~s~D~~~~~~ 82 (342)
T d2ovrb2 6 LKSPKVLKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDN--IIISGSTDRTLKVW 82 (342)
T ss_dssp CCCCEEEECSTTSCEE-EEEEETTEEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEETT--EEEEEETTSCEEEE
T ss_pred CCcCEEECCcCCceEE-EEEECCCEEEEEeCCCeEEEEECCCCCEEEEEeCCCCCEEEEEeCCC--ccccceeccccccc
Confidence 3456789999999865 46678999999999999999999999999999999999999999875 99999999999999
Q ss_pred EcCCCCceeEEeeccccceEEE--------------------------------------EEcCCCCeEEEEEeCCCcEE
Q 003236 625 DTENPDYSLRTFTGHSTTVMSL--------------------------------------DFHPSKEDLLCSCDNNSEIR 666 (837)
Q Consensus 625 Dl~~~~~~~~~~~~h~~~V~sl--------------------------------------~fspdg~~llasgs~Dg~I~ 666 (837)
+...... ......+...+... .+... ...+++++.|+.|+
T Consensus 83 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~d~~i~ 160 (342)
T d2ovrb2 83 NAETGEC-IHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYD-GRRVVSGAYDFMVK 160 (342)
T ss_dssp ETTTTEE-EEEECCCSSCEEEEEEETTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEEC-SSCEEEEETTSCEE
T ss_pred ccccccc-eecccccceeEeeeecccccccccccceeEEEeecccccceeeeecccccceeeccc-cceeeeecCCCeEE
Confidence 9875432 11111111111111 11112 22455777889999
Q ss_pred EEECCCCeeeeEEecCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEe-CC
Q 003236 667 YWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DE 745 (837)
Q Consensus 667 vwDl~t~~~i~~~~~~~~i~sl~~sp~g~~llags~dg~I~iwDl~s~~~~~~l~~h~~~V~sl~~spdg~~Lasgs-Dg 745 (837)
+||+...+++..+..+ ......+.+++..+++++.|+.|++||++.++++..+.+|...|.++++++ ++|++++ |+
T Consensus 161 ~~d~~~~~~~~~~~~~-~~~~~~~~~~~~~l~s~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~--~~l~s~s~d~ 237 (342)
T d2ovrb2 161 VWDPETETCLHTLQGH-TNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKD--NILVSGNADS 237 (342)
T ss_dssp EEEGGGTEEEEEECCC-SSCEEEEEECSSEEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEEEET--TEEEEEETTS
T ss_pred EeecccceeeEEEcCc-ccccccccCCCCEEEEEeCCCeEEEeecccceeeeEecccccceeEEecCC--CEEEEEcCCC
Confidence 9999888887776643 344555667889999999999999999999999999999999999888864 6888888 99
Q ss_pred eEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE-Ee-----ccCCCCeeEEEEeC
Q 003236 746 LVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TL-----SAHDKLVSSLAAST 819 (837)
Q Consensus 746 ~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fspdg~~L~sgs~dg~I~IwDl~s~~~~-~l-----~~h~~~V~sla~sp 819 (837)
.|++||+........+.....|...+.++.++ +.++++++.||.|+|||+++++.+ .+ .+|...|++++|+|
T Consensus 238 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~s~s~Dg~i~iwd~~tg~~i~~~~~~~~~~~~~~v~~v~~s~ 315 (342)
T d2ovrb2 238 TVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN--KNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASN 315 (342)
T ss_dssp CEEEEETTTCCEEEEECSTTSCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECS
T ss_pred EEEEEecccccccccccccceeeeceeecccC--CCeeEEEcCCCEEEEEECCCCCEEEEEecccCCCCCCCEEEEEECC
Confidence 99999998874323332233455566666665 568999999999999999999877 32 35778899999999
Q ss_pred CCCEEEEEECCCc----EEEeC
Q 003236 820 VNGMVASASHDKC----VKIWK 837 (837)
Q Consensus 820 dg~~LaSgs~DG~----I~IWd 837 (837)
++.+|++|+.||+ |++||
T Consensus 316 ~~~~la~g~~dGt~~~~l~~~D 337 (342)
T d2ovrb2 316 TKLVCAVGSRNGTEETKLLVLD 337 (342)
T ss_dssp SEEEEEEECSSSSSCCEEEEEE
T ss_pred CCCEEEEEeCCCCCeeEEEEEe
Confidence 9999999999985 89997
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=1.7e-31 Score=292.51 Aligned_cols=292 Identities=22% Similarity=0.353 Sum_probs=229.9
Q ss_pred CccccCCCeEEcccCCCceEEeecCCCCCCCCccccccccCCCeeeeEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcE
Q 003236 500 NQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKA 579 (837)
Q Consensus 500 ~~l~~~~~~v~~Gs~D~~v~~w~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~H~~~V~sl~fSpdg~~Lasgs~Dg~I 579 (837)
..+.....++++|+ |+.|++|...+............. ..............|...|++++|+|++++|++|+.||.|
T Consensus 68 l~fs~dg~~lasg~-d~~i~iW~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~V~~l~~s~~~~~l~s~~~dg~v 145 (388)
T d1erja_ 68 VKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAA-NKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLI 145 (388)
T ss_dssp EEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC------------------CCCCBEEEEEECTTSSEEEEEETTSCE
T ss_pred EEECCCCCEEEEEe-CCeEEEEEecccceEeeecccccc-cccccccccccccCCCCCEEEEEECCCCCcceeccccccc
Confidence 33444557899997 899999977554211110000000 0011111233456789999999999999999999999999
Q ss_pred EEEeCCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeEEeeccccceEEEEEcCCCCeEEEEE
Q 003236 580 VLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSC 659 (837)
Q Consensus 580 ~VWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~sl~fspdg~~llasg 659 (837)
++||...++.+..+.+|...|.+++|++++..+++++.++.|++||+.+... ..... +...+.++.+.+....+|+++
T Consensus 146 ~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~l~~~ 223 (388)
T d1erja_ 146 RIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQC-SLTLS-IEDGVTTVAVSPGDGKYIAAG 223 (388)
T ss_dssp EEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEE-EEEEE-CSSCEEEEEECSTTCCEEEEE
T ss_pred ccccccccccccccccccccccccccccccccccccccceeeeeeecccccc-ccccc-cccccccccccCCCCCeEEEE
Confidence 9999999999999999999999999999999999999999999999997543 44444 445566677777656688899
Q ss_pred eCCCcEEEEECCCCeeeeEEec--------CCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCe------------EEEE
Q 003236 660 DNNSEIRYWSINNGSCAGVFKC--------QSGATQMRFQPRLGRILAAAIENYISILDVETQV------------CRLK 719 (837)
Q Consensus 660 s~Dg~I~vwDl~t~~~i~~~~~--------~~~i~sl~~sp~g~~llags~dg~I~iwDl~s~~------------~~~~ 719 (837)
+.|+.|++||+.++..+..+.. ...|.+++|+|++.+|++++.|+.|++||+++.. ....
T Consensus 224 ~~d~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~ 303 (388)
T d1erja_ 224 SLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVT 303 (388)
T ss_dssp ETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC---------------CEEEE
T ss_pred cCCCeEEEeecccCccceeeccccccccCCCCCEEEEEECCCCCEEEEEECCCcEEEEeccCCccccccccccccceeee
Confidence 9999999999999888776542 4569999999999999999999999999997643 3445
Q ss_pred EcCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEE------eCCCCEEEEEEcCCeE
Q 003236 720 LQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVF------HPTFPSLLVIGCYETL 792 (837)
Q Consensus 720 l~~h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~f------spdg~~L~sgs~dg~I 792 (837)
...|...|.+++|+|++++|++++ ||.|+|||+.++ +++..+.+|...|.++++ +|++.+|++++.|++|
T Consensus 304 ~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~vwd~~~~---~~~~~l~~H~~~V~~~~~~~~~~~spd~~~l~s~s~Dg~I 380 (388)
T d1erja_ 304 YIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSG---NPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKA 380 (388)
T ss_dssp EECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTC---CEEEEEECCSSCEEEEEECSSCTTCTTCEEEEEEETTSEE
T ss_pred cccccceEEEEEECCCCCEEEEEeCCCEEEEEECCCC---cEEEEEeCCCCCEEEEEEecCcccCCCCCEEEEEeCCCEE
Confidence 567889999999999999999999 999999999988 788899999999999875 6788999999999999
Q ss_pred EEEECC
Q 003236 793 ELWNMT 798 (837)
Q Consensus 793 ~IwDl~ 798 (837)
+|||++
T Consensus 381 ~iW~~~ 386 (388)
T d1erja_ 381 RIWKYK 386 (388)
T ss_dssp EEEEEE
T ss_pred EEEeee
Confidence 999974
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=6.1e-31 Score=280.91 Aligned_cols=280 Identities=16% Similarity=0.250 Sum_probs=222.5
Q ss_pred EEEEecCCCCCe-EEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEE
Q 003236 547 EFQLIPASTSKV-ESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWD 625 (837)
Q Consensus 547 ~~~~l~~H~~~V-~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWD 625 (837)
+..+|+||.+.| +|++| ++++||+|+.||+|+|||+.+++++.++.+|.+.|++++|+++ .+|++|+.|++|++|+
T Consensus 4 ~~~tL~GH~~~vitc~~~--~~~~l~tgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~l~~s~~-~~l~s~s~D~~i~iw~ 80 (355)
T d1nexb2 4 QRTTLRGHMTSVITCLQF--EDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHG-GILVSGSTDRTVRVWD 80 (355)
T ss_dssp EEEEEECCSSSCEEEEEE--ETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEEETT-TEEEEEETTCCEEEEE
T ss_pred CcEEECCcCCCcEEEEEE--CCCEEEEEeCCCeEEEEECCCCcEEEEEECCCCCEEEEEEcCC-CEEEEEeccccccccc
Confidence 356789999886 56555 6789999999999999999999999999999999999999985 5899999999999999
Q ss_pred cCCCCceeEEee-ccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeeEEecC----------------------
Q 003236 626 TENPDYSLRTFT-GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ---------------------- 682 (837)
Q Consensus 626 l~~~~~~~~~~~-~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~~---------------------- 682 (837)
+........... .+...+..+.+.+++ .++++++.|+.|++||+.+..........
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (355)
T d1nexb2 81 IKKGCCTHVFEGHNSTVRCLDIVEYKNI-KYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRG 159 (355)
T ss_dssp TTTTEEEEEECCCSSCEEEEEEEEETTE-EEEEEEETTSEEEEEECCC-----------CCCEEESCTTTCTTEEEEEEC
T ss_pred cccccccccccccccccccccccccccc-ceeeeecCCCcEEEEEccCCceeccccccceeccceeccccccceeeeeee
Confidence 997654322222 223344556667764 46778999999999999876544322210
Q ss_pred CCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeE
Q 003236 683 SGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECI 761 (837)
Q Consensus 683 ~~i~sl~~sp~g~~llags~dg~I~iwDl~s~~~~~~l~~h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i 761 (837)
.......+.+++..++++..|+.|++||+++++.+..+.++...+.++.|++++.++++++ |+.|++||+.++ ..+
T Consensus 160 ~~~~v~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~---~~~ 236 (355)
T d1nexb2 160 HMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENG---ELM 236 (355)
T ss_dssp CSSCEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTC---CEE
T ss_pred ccccccccccccceeeeecccceeeeeecccccceeeeeccccccccccccccceeeecccccceEEeeecccc---ccc
Confidence 1112344566788999999999999999999999999999999999999999999999998 999999999987 778
Q ss_pred EEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEEEeccCCCCeeEE-EEeCCCCEEEEEECCCcEEEeC
Q 003236 762 HELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSAHDKLVSSL-AASTVNGMVASASHDKCVKIWK 837 (837)
Q Consensus 762 ~~~~~~~~~I~sv~fspdg~~L~sgs~dg~I~IwDl~s~~~~~l~~h~~~V~sl-a~spdg~~LaSgs~DG~I~IWd 837 (837)
..+..|...|.++++++ ++|++++.|+.|++||+.+..... ..|...+.++ ++++++.+|++| .||.|+|||
T Consensus 237 ~~~~~h~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~g-~d~~i~vwd 309 (355)
T d1nexb2 237 YTLQGHTALVGLLRLSD--KFLVSAAADGSIRGWDANDYSRKF-SYHHTNLSAITTFYVSDNILVSG-SENQFNIYN 309 (355)
T ss_dssp EEECCCSSCCCEEEECS--SEEEEECTTSEEEEEETTTCCEEE-EEECTTCCCCCEEEECSSEEEEE-ETTEEEEEE
T ss_pred ccccccccccccccccc--ceeeeeecccccccccccccceec-ccccCCceEEEEEcCCCCEEEEE-eCCEEEEEE
Confidence 88899999999999875 589999999999999999887653 3455555554 566777777665 589999997
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Probab=100.00 E-value=5.8e-31 Score=289.59 Aligned_cols=286 Identities=15% Similarity=0.179 Sum_probs=230.0
Q ss_pred CceEEEEecCCCCCcccCCCccccCCCeEEcccCCCceEEeecCCCCCCCCccccccccCCCeeeeEEEEecCCCCCeEE
Q 003236 481 SKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVES 560 (837)
Q Consensus 481 ~~s~~~~~~~~~~~~~~~~~~l~~~~~~v~~Gs~D~~v~~w~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~H~~~V~s 560 (837)
+.+++.|++++ .++++|+.|+.|++|.... ..+..+..+++|.++|++
T Consensus 9 pIt~~~~s~dg---------------~~la~~~~~~~i~iw~~~~-----------------~~~~~~~~l~gH~~~V~~ 56 (371)
T d1k8kc_ 9 PISCHAWNKDR---------------TQIAICPNNHEVHIYEKSG-----------------NKWVQVHELKEHNGQVTG 56 (371)
T ss_dssp CCCEEEECTTS---------------SEEEEECSSSEEEEEEEET-----------------TEEEEEEEEECCSSCEEE
T ss_pred CeEEEEECCCC---------------CEEEEEeCCCEEEEEECCC-----------------CCEEEEEEecCCCCCEEE
Confidence 45666666654 6889999999999995422 234567788999999999
Q ss_pred EEEcCCCCEEEEEECCCcEEEEeCCCCeEE--EEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCce---eEE
Q 003236 561 CHFSPDGKLLATGGHDKKAVLWCTESFTVK--STLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYS---LRT 635 (837)
Q Consensus 561 l~fSpdg~~Lasgs~Dg~I~VWd~~t~~~~--~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~~~~~---~~~ 635 (837)
|+|+|++++|++|+.|++|+|||+.++... ..+..|...|++++|+|++++|++++.|++|++|+++..... ...
T Consensus 57 l~fsp~~~~l~s~s~D~~i~vWd~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~s~d~~i~i~~~~~~~~~~~~~~~ 136 (371)
T d1k8kc_ 57 VDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHI 136 (371)
T ss_dssp EEEETTTTEEEEEETTSCEEEEEEETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEE
T ss_pred EEECCCCCEEEEEECCCeEEEEeecccccccccccccccccccccccccccccceeecccCcceeeeeeccccccccccc
Confidence 999999999999999999999999876544 456788999999999999999999999999999998865532 244
Q ss_pred eeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCe------------------eeeEE-ecCCCeeEEEEecCCCE
Q 003236 636 FTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS------------------CAGVF-KCQSGATQMRFQPRLGR 696 (837)
Q Consensus 636 ~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~------------------~i~~~-~~~~~i~sl~~sp~g~~ 696 (837)
...|...|.+++|+|++. +|++|+.|+.|++||+.... .+... .+...+.+++|+|++..
T Consensus 137 ~~~~~~~v~~v~~~p~~~-~l~s~s~D~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~ 215 (371)
T d1k8kc_ 137 KKPIRSTVLSLDWHPNSV-LLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSR 215 (371)
T ss_dssp CTTCCSCEEEEEECTTSS-EEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSE
T ss_pred cccccccccccccccccc-ceeccccCcEEEEEeeccCccccccccccccccccceeeeeeccCccCcEEEEEeeccccc
Confidence 557889999999999976 56799999999999986532 12222 23456899999999999
Q ss_pred EEEEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCeEEEEEcCCCCCcee----------E-----
Q 003236 697 ILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGEC----------I----- 761 (837)
Q Consensus 697 llags~dg~I~iwDl~s~~~~~~l~~h~~~V~sl~~spdg~~LasgsDg~I~IwDl~s~~~~~~----------i----- 761 (837)
|++++.|+.|++||+.++..+..+..|..+|.+++|+|++.+|++|.|+.+++|.......... .
T Consensus 216 l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~s~~fs~d~~~la~g~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (371)
T d1k8kc_ 216 VAWVSHDSTVCLADADKKMAVATLASETLPLLAVTFITESSLVAAGHDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGL 295 (371)
T ss_dssp EEEEETTTEEEEEEGGGTTEEEEEECSSCCEEEEEEEETTEEEEEETTSSCEEEEEETTTTEEEECCCCCCC--------
T ss_pred ccccccCCcceEEeeecccceeeeecccccceeeeecCCCCEEEEEcCCceEEEEeeCCCceEEEeeeecCccccccccc
Confidence 9999999999999999999999999999999999999999999988888777766543211000 0
Q ss_pred -----------------------EEeecCCCceEEEEEeCCC----CEEEEEEcCCeEEEEECCC
Q 003236 762 -----------------------HELSCTGNKFHSCVFHPTF----PSLLVIGCYETLELWNMTE 799 (837)
Q Consensus 762 -----------------------~~~~~~~~~I~sv~fspdg----~~L~sgs~dg~I~IwDl~s 799 (837)
.....|.+.|+++++.+.+ ..|++++.||.|+|||+++
T Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~I~~i~~~~~~~~~~~~~~T~g~Dg~v~iW~~~~ 360 (371)
T d1k8kc_ 296 TARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRS 360 (371)
T ss_dssp CHHHHHHHCCCCC---------CCCSSSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEHHH
T ss_pred cceeeEecccceeEEeccccccceecccccCCEEEEEEeCCCCcceEEEEEEcCCCeEEEEeCCc
Confidence 0001267789999998755 3588999999999999854
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.98 E-value=9.8e-30 Score=263.74 Aligned_cols=274 Identities=20% Similarity=0.383 Sum_probs=220.1
Q ss_pred eeEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEE
Q 003236 545 FTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVW 624 (837)
Q Consensus 545 ~~~~~~l~~H~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IW 624 (837)
+..+.+..+|...|+|++| ||++||+|+.||+|+|||+.+++++.++.+|.+.|++++| ++++|++|+.|+.|++|
T Consensus 5 ~~~i~~~~~~~~~V~c~~~--d~~~l~sgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~v~~--~~~~l~s~s~D~~i~~~ 80 (293)
T d1p22a2 5 LQRIHCRSETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVW 80 (293)
T ss_dssp CCCEECCCSSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEE
T ss_pred EEEEeccCCCCCCEEEEEE--cCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCEeeeec--ccceeeccccccccccc
Confidence 4456777889999999765 7899999999999999999999999999999999999987 56799999999999999
Q ss_pred EcCCCCceeEEeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeeEEe----cCCCeeEEEEecCCCEEEEE
Q 003236 625 DTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK----CQSGATQMRFQPRLGRILAA 700 (837)
Q Consensus 625 Dl~~~~~~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~----~~~~i~sl~~sp~g~~llag 700 (837)
++..+.. ......+...... +.+... .++++..++.+.+||+.......... +...+..+.+. ...++++
T Consensus 81 ~~~~~~~-~~~~~~~~~~~~~--~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~~~ 154 (293)
T d1p22a2 81 DVNTGEM-LNTLIHHCEAVLH--LRFNNG-MMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD--DKYIVSA 154 (293)
T ss_dssp ESSSCCE-EEEECCCCSCEEE--EECCTT-EEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEE--TTEEEEE
T ss_pred ccccccc-ccccccccccccc--cccccc-ceeecccccceeEeeccccccccccccccccccccccceec--ccccccc
Confidence 9998664 3333333333333 333333 56688889999999998765433222 23445555554 4678899
Q ss_pred EcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCC
Q 003236 701 AIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPT 779 (837)
Q Consensus 701 s~dg~I~iwDl~s~~~~~~l~~h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fspd 779 (837)
+.|+.|++||+++++.+..+.++...|..+.++ +.++++++ |+.|++||+++. ..+.....+...+.. ++++
T Consensus 155 s~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~i~i~d~~~~---~~~~~~~~~~~~v~~--~~~~ 227 (293)
T d1p22a2 155 SGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYR--DRLVVSGSSDNTIRLWDIECG---ACLRVLEGHEELVRC--IRFD 227 (293)
T ss_dssp ETTSEEEEEETTTCCEEEEEECCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTC---CEEEEECCCSSCEEE--EECC
T ss_pred cCCCceeeecCCCCcEEEEEcccccccccccCC--CCeEEEecCCCEEEEEecccc---eeeeeecccceeeee--cccc
Confidence 999999999999999999999999999888876 56788877 999999999987 677777777777654 5677
Q ss_pred CCEEEEEEcCCeEEEEECCCC---------cEE-EeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 003236 780 FPSLLVIGCYETLELWNMTEN---------KTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 837 (837)
Q Consensus 780 g~~L~sgs~dg~I~IwDl~s~---------~~~-~l~~h~~~V~sla~spdg~~LaSgs~DG~I~IWd 837 (837)
+.+|++++.|+.|++||+... ..+ .+.+|.+.|++++|+ +.+|+||+.||+|+|||
T Consensus 228 ~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~H~~~V~~v~~d--~~~l~s~s~Dg~i~iWD 293 (293)
T d1p22a2 228 NKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFD--EFQIVSSSHDDTILIWD 293 (293)
T ss_dssp SSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEEC--SSCEEECCSSSEEEEEC
T ss_pred ceEEEEEcCCCEEEEEECCCCccccccCCceeeEEecCCCCCEEEEEEc--CCEEEEEecCCEEEEeC
Confidence 889999999999999997432 233 678999999999985 67899999999999998
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.97 E-value=7.7e-30 Score=275.73 Aligned_cols=278 Identities=14% Similarity=0.184 Sum_probs=220.0
Q ss_pred CeEEEEEcCCCCEEEEEECCC-cEEEEeCCC--CeEEEEeccC-CCCeEEEEEcC--CCCEEEEEeCCCeEEEEEcCCCC
Q 003236 557 KVESCHFSPDGKLLATGGHDK-KAVLWCTES--FTVKSTLEEH-TQWITDVRFSP--SLSRLATSSADRTVRVWDTENPD 630 (837)
Q Consensus 557 ~V~sl~fSpdg~~Lasgs~Dg-~I~VWd~~t--~~~~~~l~~h-~~~I~~l~fsp--dg~~Latgs~Dg~I~IWDl~~~~ 630 (837)
.+++++|+|+|+.||+++.+. .|+.|+... ...+..+.+| ...|++++|+| ++.+|++|+.||+|+|||+....
T Consensus 19 ~~t~l~~~~~~~~la~~~~~~~~i~~~~~~~~~~~~~~~~~gh~~~~v~~v~fsP~~~g~~lasgs~Dg~i~iWd~~~~~ 98 (325)
T d1pgua1 19 FTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDK 98 (325)
T ss_dssp CCCCCEEETTTTEEEEEETTEEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEG
T ss_pred CeEEEEECCCCCEEEEEeCCCEEEEEEeCCCCCccceEEEeCCCCCCEEEEEEeeCCCCCEEEEEeCCCCEEEeeecCCc
Confidence 467899999999999987554 345566443 2345667777 46899999998 57899999999999999987543
Q ss_pred ce-------eEEeeccccceEEEEEcCCCCeEEEEE-eCCCcEEEEECCCCeeeeEEec-CCCeeEEEEecCCCE-EEEE
Q 003236 631 YS-------LRTFTGHSTTVMSLDFHPSKEDLLCSC-DNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGR-ILAA 700 (837)
Q Consensus 631 ~~-------~~~~~~h~~~V~sl~fspdg~~llasg-s~Dg~I~vwDl~t~~~i~~~~~-~~~i~sl~~sp~g~~-llag 700 (837)
.. ...+..|.+.|.+++|++++..+++++ +.++.+.+|+..+++++..+.. ...+.+++|+|++.. ++++
T Consensus 99 ~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~ 178 (325)
T d1pgua1 99 ESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTV 178 (325)
T ss_dssp GGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETTTCCEEEECCSCSSCEEEEEECSSSSCEEEEE
T ss_pred ceeeeecccccccccccCcEEEEEECCCCCccceeeccccceEEEEeecccccceeeeecccccccccccccccceEEEe
Confidence 21 123556889999999999988766544 3577899999999998888774 567999999998876 6678
Q ss_pred EcCCeEEEEECCCCeEEEEEc---CCCCCEEEEEEcCC-CCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEE
Q 003236 701 AIENYISILDVETQVCRLKLQ---GHKNQVHSVCWNTS-GEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCV 775 (837)
Q Consensus 701 s~dg~I~iwDl~s~~~~~~l~---~h~~~V~sl~~spd-g~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~ 775 (837)
+.|+.|++||....+....+. .|...|++++|+|+ +.+|++++ |+.|++||++++ .++..+..|...+..+.
T Consensus 179 ~~d~~v~~~d~~~~~~~~~~~~~~~~~~~v~~v~~~pd~~~~l~s~~~d~~i~iwd~~~~---~~~~~l~~~~~~v~~~~ 255 (325)
T d1pgua1 179 GDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSG---EFLKYIEDDQEPVQGGI 255 (325)
T ss_dssp ETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTC---CEEEECCBTTBCCCSCE
T ss_pred ecccccccccccccccceecccccCCCCccEEeeeccccceeccccccccceeeeeeccc---cccccccccccccccce
Confidence 889999999999887766654 46778999999997 68888888 999999999887 67888888877776655
Q ss_pred Ee---CCCCEEEEEEcCCeEEEEECCCCcEE-EeccCCC--CeeEEEEeCC-CCEEEEEECCCcEEEeC
Q 003236 776 FH---PTFPSLLVIGCYETLELWNMTENKTL-TLSAHDK--LVSSLAASTV-NGMVASASHDKCVKIWK 837 (837)
Q Consensus 776 fs---pdg~~L~sgs~dg~I~IwDl~s~~~~-~l~~h~~--~V~sla~spd-g~~LaSgs~DG~I~IWd 837 (837)
|+ +++.+|++++.|+.|+|||+.+++++ .+..|.. .+..+++.+. +.+|++++.||.|+|||
T Consensus 256 ~s~~~~dg~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~vwd 324 (325)
T d1pgua1 256 FALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYE 324 (325)
T ss_dssp EEEEESSSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEEETTEEEEEETTSCEEEEE
T ss_pred eeeeccCCCEEEEEeCCCeEEEEECCCCCEEEEEEecCCcccCeEEEEEECCCCEEEEEECCCEEEEEE
Confidence 55 78899999999999999999999987 3444443 3444444433 34889999999999997
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.97 E-value=4.6e-30 Score=270.11 Aligned_cols=266 Identities=15% Similarity=0.217 Sum_probs=219.9
Q ss_pred eEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEE
Q 003236 546 TEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWD 625 (837)
Q Consensus 546 ~~~~~l~~H~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWD 625 (837)
+.++++.+|.++|++++|+| |++|+.||+|++||+.++ ...|...|.+++|+++ ..+++++.|++|++|+
T Consensus 4 ~~i~~l~gH~~~I~~l~~s~----l~sgs~Dg~v~~Wd~~~~-----~~~h~~~V~~~~~~~~-~~~~s~s~D~~v~~w~ 73 (287)
T d1pgua2 4 EVLKTISGHNKGITALTVNP----LISGSYDGRIMEWSSSSM-----HQDHSNLIVSLDNSKA-QEYSSISWDDTLKVNG 73 (287)
T ss_dssp EEEEEECCCSSCEEEEETTT----TEEEETTSCEEETTTTEE-----ECCCCSCEEEEECCST-TCCEEEETTTEEEETT
T ss_pred ceeEEECCCCCceEEEEECc----EEEEeCCCeEEEEECCCC-----CCCCCCCEEEEEecCC-CeEEEEeecccccccc
Confidence 56889999999999999987 999999999999998763 3579999999999876 4689999999999999
Q ss_pred cCCCCceeEEeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeeEEecCCCeeEEEEecCCCEEEEEEcCC-
Q 003236 626 TENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIEN- 704 (837)
Q Consensus 626 l~~~~~~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~~~~i~sl~~sp~g~~llags~dg- 704 (837)
+.... +...+.++++++++. ++++ +.++.+.+|+..+++.+..+.....+ .++++++..+++++.++
T Consensus 74 ~~~~~--------~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~v~~~~~~ 141 (287)
T d1pgua2 74 ITKHE--------FGSQPKVASANNDGF-TAVL-TNDDDLLILQSFTGDIIKSVRLNSPG--SAVSLSQNYVAVGLEEGN 141 (287)
T ss_dssp EEEEE--------CSSCEEEEEECSSSE-EEEE-ETTSEEEEEETTTCCEEEEEECSSCE--EEEEECSSEEEEEETTTS
T ss_pred ccccc--------cccceeeeeeccCCc-eEEE-eecccceeeeccceeeeeecccccee--eeeeccCcceeeeccccc
Confidence 86422 234577888888754 4434 44678999999999999888865554 45677788888888875
Q ss_pred eEEEEECCCCeEEEEEc-CCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeE-EEeecCCCceEEEEEeCC--
Q 003236 705 YISILDVETQVCRLKLQ-GHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECI-HELSCTGNKFHSCVFHPT-- 779 (837)
Q Consensus 705 ~I~iwDl~s~~~~~~l~-~h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i-~~~~~~~~~I~sv~fspd-- 779 (837)
.|++|++........+. .|...|++++|+|++.+|++++ |+.|++||+.++ ..+ ..+..|...|.+++|+|.
T Consensus 142 ~v~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~---~~~~~~~~~h~~~v~~~~~~p~~~ 218 (287)
T d1pgua2 142 TIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSR---EVKTSRWAFRTSKINAISWKPAEK 218 (287)
T ss_dssp CEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTT---EEEECCSCCCSSCEEEEEECCCC-
T ss_pred eeeeeeccccceeeeeeeccCCceeEEEeccCccccccccccccccceeeccc---ccccccccccccccceeeeccccc
Confidence 79999998776666554 4778999999999999999998 999999999876 333 345678899999999875
Q ss_pred --------CCEEEEEEcCCeEEEEECCCC-cEE-EeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 003236 780 --------FPSLLVIGCYETLELWNMTEN-KTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 837 (837)
Q Consensus 780 --------g~~L~sgs~dg~I~IwDl~s~-~~~-~l~~h~~~V~sla~spdg~~LaSgs~DG~I~IWd 837 (837)
+.+|++++.|+.|+|||+.+. +.+ .+.+|...|++++|++++ .|++++.||.|+|||
T Consensus 219 ~~~~~~~~~~~l~sgs~D~~i~iw~~~~~~~~~~~~~~h~~~V~~v~~~~~~-~l~s~g~D~~v~iW~ 285 (287)
T d1pgua2 219 GANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPS-TLVSSGADACIKRWN 285 (287)
T ss_dssp -----CCSCCEEEEEETTSCEEEEESSCTTCCEEETTSSTTCEEEEEEEETT-EEEEEETTSCEEEEE
T ss_pred ccccccCCCCeeEeecCCCeEEEEECCCCCeEEEEeCCCCCCeEEEEECCCC-EEEEEECCCeEEEEE
Confidence 468999999999999999764 444 556899999999999986 688999999999996
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.97 E-value=9.4e-30 Score=269.14 Aligned_cols=291 Identities=12% Similarity=0.050 Sum_probs=218.7
Q ss_pred eEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeE---EEEeccCCCCeEEEEEcCC-CCEEEEEeCCCeE
Q 003236 546 TEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTV---KSTLEEHTQWITDVRFSPS-LSRLATSSADRTV 621 (837)
Q Consensus 546 ~~~~~l~~H~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~---~~~l~~h~~~I~~l~fspd-g~~Latgs~Dg~I 621 (837)
+.+....+|.+.|++|+|+|++++||+|+.||+|+|||+.+... .....+|...|.+++|+++ +.+|++|+.|+.|
T Consensus 2 ~~v~~~~~h~d~I~~l~fsp~~~~L~s~s~Dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~f~~~~~~~l~sg~~d~~v 81 (342)
T d1yfqa_ 2 QIVQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEI 81 (342)
T ss_dssp EEEECSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCE
T ss_pred CeEEcCCCCCCCEEEEEEeCCCCEEEEEECCCeEEEEEccCCCcceEEEEecCCCCCEEEEEEeCCCCCEEEEcccccce
Confidence 35677889999999999999999999999999999999865432 2233469999999999986 5589999999999
Q ss_pred EEEEcCCCCceeEEeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeeEEec-------CCCeeEEEEecCC
Q 003236 622 RVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-------QSGATQMRFQPRL 694 (837)
Q Consensus 622 ~IWDl~~~~~~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~-------~~~i~sl~~sp~g 694 (837)
++|++............+........+.++ ...+++++.++.+++||++.+........ ......+.+.+.+
T Consensus 82 ~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (342)
T d1yfqa_ 82 LKVDLIGSPSFQALTNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNS 160 (342)
T ss_dssp EEECSSSSSSEEECBSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEECS
T ss_pred eeeecccccccccccccccccccccccccc-cccccccccccccceeeccccccceeeecccccccccceeeeeeeeccC
Confidence 999999876544433333344444444444 45777899999999999876443332221 2234567788888
Q ss_pred CEEEEEEcCCeEEEEECCCCeE---EEEEcCCCCCEEEEEEcC-CCCEEEEEe-CCeEEEEEcCCCCCc------eeEE-
Q 003236 695 GRILAAAIENYISILDVETQVC---RLKLQGHKNQVHSVCWNT-SGEYLASVS-DELVRVWSIGSGSKG------ECIH- 762 (837)
Q Consensus 695 ~~llags~dg~I~iwDl~s~~~---~~~l~~h~~~V~sl~~sp-dg~~Lasgs-Dg~I~IwDl~s~~~~------~~i~- 762 (837)
..+++++.|+.|++||++.... ......+...+.++.+.+ ++..+++++ ||.+.+|++...... ....
T Consensus 161 ~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~v~~~~~~~~~~~~~~~~~~~~ 240 (342)
T d1yfqa_ 161 SRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRC 240 (342)
T ss_dssp SEEEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEEC
T ss_pred CceeeecCCCcEEEEecccCcccceeeeecccccceeeeEeecCCCCEEEeecCCCeEEEEEecCCcceeeccccceeee
Confidence 9999999999999999976532 233334555666666654 567888888 999999998754221 1111
Q ss_pred -----EeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEEEeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 003236 763 -----ELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 837 (837)
Q Consensus 763 -----~~~~~~~~I~sv~fspdg~~L~sgs~dg~I~IwDl~s~~~~~l~~h~~~V~sla~spdg~~LaSgs~DG~I~IWd 837 (837)
....|...+.+++|+|++.+|++|+.||.|+|||+.+++.+....+...+..++|++++++|++|+.|+.+++|.
T Consensus 241 ~~~~~~~~~~~~~v~~l~~sp~~~~lasg~~Dg~v~vWD~~~~~~l~~~~~~~~~~~~~~s~~~~~l~~a~sdd~~~~~~ 320 (342)
T d1yfqa_ 241 HRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIACSDNILCLATSDDTFKTNA 320 (342)
T ss_dssp CCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSSEEEEEEECSSEEEEEEECTHHHHCS
T ss_pred eeeccCCCcccccceeEEecCCccEEEEECCCCEEEEEECCCCcEEEEecCCCCCEEEEEEeCCCEEEEEEcCCcEEEee
Confidence 122455678999999999999999999999999999999885554445667788899999999999988777663
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.97 E-value=3.6e-28 Score=258.76 Aligned_cols=277 Identities=23% Similarity=0.378 Sum_probs=236.7
Q ss_pred CCceEEEEecCCCCCcccCCCccccCCCeEEcccCCCceEEeecCCCCCCCCccccccccCCCeeeeEEEEecCCCCCeE
Q 003236 480 SSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVE 559 (837)
Q Consensus 480 ~~~s~~~~~~~~~~~~~~~~~~l~~~~~~v~~Gs~D~~v~~w~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~H~~~V~ 559 (837)
.....+.|++++ .++++|+.|+.|++|..... ..+..+..|...|+
T Consensus 56 ~~I~~l~~s~~~---------------~~l~sgs~Dg~v~iWd~~~~-------------------~~~~~~~~~~~~v~ 101 (340)
T d1tbga_ 56 AKIYAMHWGTDS---------------RLLVSASQDGKLIIWDSYTT-------------------NKVHAIPLRSSWVM 101 (340)
T ss_dssp SCEEEEEECTTS---------------SEEEEEETTTEEEEEETTTT-------------------EEEEEEECSCSCEE
T ss_pred CCEEEEEECCCC---------------CEEEEEECCCceeeeecccc-------------------eeEEEEecccccEE
Confidence 356666666644 68999999999999965432 34567789999999
Q ss_pred EEEEcCCCCEEEEEECCCcEEEEeCCC----CeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeEE
Q 003236 560 SCHFSPDGKLLATGGHDKKAVLWCTES----FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRT 635 (837)
Q Consensus 560 sl~fSpdg~~Lasgs~Dg~I~VWd~~t----~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~~~~~~~~ 635 (837)
+++|+|++.+|++|+.|+.|++|+... ......+.+|...+....+.. +..++....|.....|+..... ....
T Consensus 102 ~v~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~ 179 (340)
T d1tbga_ 102 TCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLD-DNQIVTSSGDTTCALWDIETGQ-QTTT 179 (340)
T ss_dssp EEEECTTSSEEEEEETTCCEEEEESSSSCSCCCEEEEECCCSSCEEEEEEEE-TTEEEEEETTTEEEEEETTTTE-EEEE
T ss_pred eeEeeccceeeeeecccceeecccccccccccccceeccccccccccccccc-cccccccccccccccccccccc-cccc
Confidence 999999999999999999999999764 345667778887777666554 5678888899999999988654 3556
Q ss_pred eeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeeEEec-CCCeeEEEEecCCCEEEEEEcCCeEEEEECCCC
Q 003236 636 FTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAIENYISILDVETQ 714 (837)
Q Consensus 636 ~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~-~~~i~sl~~sp~g~~llags~dg~I~iwDl~s~ 714 (837)
...+...+..+.+.+.+. ++++++.|+.|++||+++++++..+.. ...|.+++|+|++.+|++++.|+.|++||++..
T Consensus 180 ~~~~~~~~~~~~~~~~~~-~~~~~~~d~~v~i~d~~~~~~~~~~~~h~~~i~~v~~~p~~~~l~s~s~d~~i~~~~~~~~ 258 (340)
T d1tbga_ 180 FTGHTGDVMSLSLAPDTR-LFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRAD 258 (340)
T ss_dssp EECCSSCEEEEEECTTSS-EEEEEETTTEEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTT
T ss_pred ccccceeEeeeccccccc-eeEEeecCceEEEEECCCCcEEEEEeCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeeccc
Confidence 666778899999998865 667899999999999999999988875 567999999999999999999999999999998
Q ss_pred eEEEEEc--CCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCe
Q 003236 715 VCRLKLQ--GHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYET 791 (837)
Q Consensus 715 ~~~~~l~--~h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fspdg~~L~sgs~dg~ 791 (837)
..+..+. .+...|.+++|+|++.+|++++ ||.|+|||+.++ +++..+.+|...|++++|+|++.+|++++.|+.
T Consensus 259 ~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~i~iwd~~~~---~~~~~~~~H~~~V~~l~~s~d~~~l~s~s~Dg~ 335 (340)
T d1tbga_ 259 QELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKA---DRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSF 335 (340)
T ss_dssp EEEEEECCTTCCSCEEEEEECSSSCEEEEEETTSCEEEEETTTC---CEEEEECCCSSCEEEEEECTTSSCEEEEETTSC
T ss_pred ccccccccccccCceEEEEECCCCCEEEEEECCCEEEEEECCCC---cEEEEEcCCCCCEEEEEEeCCCCEEEEEccCCE
Confidence 8777664 4667899999999999999999 999999999887 788899999999999999999999999999999
Q ss_pred EEEEE
Q 003236 792 LELWN 796 (837)
Q Consensus 792 I~IwD 796 (837)
|+|||
T Consensus 336 v~iWd 340 (340)
T d1tbga_ 336 LKIWN 340 (340)
T ss_dssp EEEEC
T ss_pred EEEeC
Confidence 99997
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=99.97 E-value=2.1e-28 Score=258.62 Aligned_cols=242 Identities=16% Similarity=0.137 Sum_probs=198.6
Q ss_pred CeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeEEeeccccceEEEEEcCCCCeEEEEEeCCCcEE
Q 003236 587 FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIR 666 (837)
Q Consensus 587 ~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~ 666 (837)
|+..+++.+|.+.|++|+|+|++++|++|+.||+|++||+.+++........|...|.+++|+|++. ++ +++.|+.|+
T Consensus 2 g~~~~~~~GH~~~V~~l~~s~dg~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~h~~~v~~v~~~~~g~-~~-~~~~d~~v~ 79 (299)
T d1nr0a2 2 GSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGD-LF-TVSWDDHLK 79 (299)
T ss_dssp TEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSC-EE-EEETTTEEE
T ss_pred CccceEcCCCCCCcEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCCcEEEEEeeccce-ee-cccceeeEE
Confidence 5678899999999999999999999999999999999999987653333357899999999999975 44 566799999
Q ss_pred EEECCCCee----eeEEecCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEE
Q 003236 667 YWSINNGSC----AGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASV 742 (837)
Q Consensus 667 vwDl~t~~~----i~~~~~~~~i~sl~~sp~g~~llags~dg~I~iwDl~s~~~~~~l~~h~~~V~sl~~spdg~~Lasg 742 (837)
+|++..... .........+.+++|++++..++ ++.++.+.+|+... ..... ....+.+++|+|++.+|+++
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~-~~~~~~i~~~~~~~--~~~~~--~~~~~~~~~~s~~~~~l~~g 154 (299)
T d1nr0a2 80 VVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAV-AACYKHIAIYSHGK--LTEVP--ISYNSSCVALSNDKQFVAVG 154 (299)
T ss_dssp EECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEE-EEESSEEEEEETTE--EEEEE--CSSCEEEEEECTTSCEEEEE
T ss_pred EeccCCcccccccccccccccccccccccccccccc-cccccccccccccc--ccccc--cccccccccccccccccccc
Confidence 999865432 12233456788999999987555 45567899999653 22222 34568899999999999999
Q ss_pred e-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE----EeccCCCCeeEEEE
Q 003236 743 S-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL----TLSAHDKLVSSLAA 817 (837)
Q Consensus 743 s-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fspdg~~L~sgs~dg~I~IwDl~s~~~~----~l~~h~~~V~sla~ 817 (837)
+ |+.|++||+++... .......|...|.+++|+|++.+|++++.++.|++||+.++... .+..|...|++++|
T Consensus 155 ~~dg~i~~~d~~~~~~--~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~h~~~v~~l~~ 232 (299)
T d1nr0a2 155 GQDSKVHVYKLSGASV--SEVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSW 232 (299)
T ss_dssp ETTSEEEEEEEETTEE--EEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSSCEEEEEE
T ss_pred cccccccccccccccc--cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 8 99999999987621 22234567889999999999999999999999999999887665 45678999999999
Q ss_pred eCCCCEEEEEECCCcEEEeC
Q 003236 818 STVNGMVASASHDKCVKIWK 837 (837)
Q Consensus 818 spdg~~LaSgs~DG~I~IWd 837 (837)
+|++.+|++|+.||.|+|||
T Consensus 233 s~~~~~l~sgs~dg~i~iwd 252 (299)
T d1nr0a2 233 SPDNVRLATGSLDNSVIVWN 252 (299)
T ss_dssp CTTSSEEEEEETTSCEEEEE
T ss_pred cccccceEEEcCCCEEEEEE
Confidence 99999999999999999996
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.97 E-value=4.2e-28 Score=261.90 Aligned_cols=246 Identities=16% Similarity=0.257 Sum_probs=202.7
Q ss_pred EEEEecCC-CCCeEEEEEcC--CCCEEEEEECCCcEEEEeCCCCe--------EEEEeccCCCCeEEEEEcCCCCEEEEE
Q 003236 547 EFQLIPAS-TSKVESCHFSP--DGKLLATGGHDKKAVLWCTESFT--------VKSTLEEHTQWITDVRFSPSLSRLATS 615 (837)
Q Consensus 547 ~~~~l~~H-~~~V~sl~fSp--dg~~Lasgs~Dg~I~VWd~~t~~--------~~~~l~~h~~~I~~l~fspdg~~Latg 615 (837)
.+..+.+| ...|++++|+| ++.+||+|+.||+|+|||+..++ ....+..|.+.|.+++|++++++|+++
T Consensus 54 ~~~~~~gh~~~~v~~v~fsP~~~g~~lasgs~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~ 133 (325)
T d1pgua1 54 PVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVV 133 (325)
T ss_dssp SEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEE
T ss_pred ceEEEeCCCCCCEEEEEEeeCCCCCEEEEEeCCCCEEEeeecCCcceeeeecccccccccccCcEEEEEECCCCCcccee
Confidence 34556777 46799999998 67899999999999999986432 223456788999999999999999887
Q ss_pred eC--CCeEEEEEcCCCCceeEEeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeeEEec----CCCeeEEE
Q 003236 616 SA--DRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC----QSGATQMR 689 (837)
Q Consensus 616 s~--Dg~I~IWDl~~~~~~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~----~~~i~sl~ 689 (837)
+. ++.+++|+.+++. .+..+.+|...|.+++|+|++..++++++.|+.|++||+...+....+.. ...|.+++
T Consensus 134 ~~~~~~~~~~~~~~~~~-~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~v~~v~ 212 (325)
T d1pgua1 134 GEGRDNFGVFISWDSGN-SLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVE 212 (325)
T ss_dssp ECCSSCSEEEEETTTCC-EEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEE
T ss_pred eccccceEEEEeecccc-cceeeeecccccccccccccccceEEEeecccccccccccccccceecccccCCCCccEEee
Confidence 65 6789999998765 47888899999999999999988888999999999999998877666543 45589999
Q ss_pred EecC-CCEEEEEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEc---CCCCEEEEEe-CCeEEEEEcCCCCCceeEEEe
Q 003236 690 FQPR-LGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWN---TSGEYLASVS-DELVRVWSIGSGSKGECIHEL 764 (837)
Q Consensus 690 ~sp~-g~~llags~dg~I~iwDl~s~~~~~~l~~h~~~V~sl~~s---pdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~ 764 (837)
|+|+ +.++++++.|+.|++||+++++.+..+.+|...+.++.|+ +++.+|++++ |+.|+|||++++ +++..+
T Consensus 213 ~~pd~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~~~~~v~~~~~s~~~~dg~~l~s~s~D~~i~iwd~~~~---~~~~~~ 289 (325)
T d1pgua1 213 FSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTS---KCVQKW 289 (325)
T ss_dssp ECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEESSSSEEEEEETTSEEEEEETTTT---EEEEEE
T ss_pred eccccceeccccccccceeeeeeccccccccccccccccccceeeeeccCCCEEEEEeCCCeEEEEECCCC---CEEEEE
Confidence 9997 5778889999999999999999999999888877665555 6899999988 999999999987 677766
Q ss_pred ecCCCc--eE--EEEEeCCCCEEEEEEcCCeEEEEEC
Q 003236 765 SCTGNK--FH--SCVFHPTFPSLLVIGCYETLELWNM 797 (837)
Q Consensus 765 ~~~~~~--I~--sv~fspdg~~L~sgs~dg~I~IwDl 797 (837)
..+... +. ++.+.++ .+|++++.|+.|+|||+
T Consensus 290 ~~~~~~~~~~~~~~~~~~~-~~l~s~s~dg~i~vwdl 325 (325)
T d1pgua1 290 TLDKQQLGNQQVGVVATGN-GRIISLSLDGTLNFYEL 325 (325)
T ss_dssp ECCTTCGGGCEEEEEEEET-TEEEEEETTSCEEEEET
T ss_pred EecCCcccCeEEEEEECCC-CEEEEEECCCEEEEEEC
Confidence 655543 23 3444443 47899999999999996
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.96 E-value=3.8e-28 Score=269.01 Aligned_cols=286 Identities=15% Similarity=0.174 Sum_probs=213.6
Q ss_pred eEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeE------EEEeccCCCCeEEEEE------cC-CCCEE
Q 003236 546 TEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTV------KSTLEEHTQWITDVRF------SP-SLSRL 612 (837)
Q Consensus 546 ~~~~~l~~H~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~------~~~l~~h~~~I~~l~f------sp-dg~~L 612 (837)
......++|.+.|+++++++ ++|++++.|++|+|||..+.+. ......|...+..+.+ +. +..++
T Consensus 5 ~~~~~~~~H~~~I~~v~~~~--~~l~S~S~D~~iriWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (393)
T d1sq9a_ 5 ATANAGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLV 82 (393)
T ss_dssp EEEEESSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEE
T ss_pred eeeecCCcccCccEEEEEeC--CEEEEEECCCeEEEEECCCCCCCcccceeEeeeeccCCceEeeeEeeeccCCCCCcEE
Confidence 34567789999999999874 6999999999999999765321 2222335444433332 11 24578
Q ss_pred EEEeCCCeEEEEEcCCCCceeEE---------eeccccceEEEEEcCCC----CeEEEEEeCCCcEEEEECCCCe-----
Q 003236 613 ATSSADRTVRVWDTENPDYSLRT---------FTGHSTTVMSLDFHPSK----EDLLCSCDNNSEIRYWSINNGS----- 674 (837)
Q Consensus 613 atgs~Dg~I~IWDl~~~~~~~~~---------~~~h~~~V~sl~fspdg----~~llasgs~Dg~I~vwDl~t~~----- 674 (837)
++++.||.|++|++......... ...+...+..++|.++. ..++++++.||.|++|++....
T Consensus 83 ~s~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~~~~~~~~~~ 162 (393)
T d1sq9a_ 83 ATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNS 162 (393)
T ss_dssp EEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHH
T ss_pred EEEeCCCcEEEEEccCCCceeeeeccccceeeeccCCCceEEEEEecCCCcccccEEEEEcCCCcEEEEEeecCCcccce
Confidence 89999999999998654321111 11244567788887764 3567789999999999974321
Q ss_pred -------e---eeEEe----cCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEE------cCCCCCEEEEEEcC
Q 003236 675 -------C---AGVFK----CQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKL------QGHKNQVHSVCWNT 734 (837)
Q Consensus 675 -------~---i~~~~----~~~~i~sl~~sp~g~~llags~dg~I~iwDl~s~~~~~~l------~~h~~~V~sl~~sp 734 (837)
. ..... ....+.+++|+|++ +|++|+.|+.|++||+++++++..+ .+|...|++++|+|
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg-~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~l~~h~~~V~~l~~sp 241 (393)
T d1sq9a_ 163 LTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSP 241 (393)
T ss_dssp TTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECS
T ss_pred eeeeeccceecccceecccCCCCcEEEEEECCCC-EEEEEeCCCcEEEEeecccccccccccccccccccceEEEccccc
Confidence 0 01111 13347899999985 8899999999999999999877654 45889999999999
Q ss_pred CCCEEEEEe-CC---eEEEEEcCCCCCceeEEEe-------------ecCCCceEEEEEeCCCCEEEEEEcCCeEEEEEC
Q 003236 735 SGEYLASVS-DE---LVRVWSIGSGSKGECIHEL-------------SCTGNKFHSCVFHPTFPSLLVIGCYETLELWNM 797 (837)
Q Consensus 735 dg~~Lasgs-Dg---~I~IwDl~s~~~~~~i~~~-------------~~~~~~I~sv~fspdg~~L~sgs~dg~I~IwDl 797 (837)
++++|++++ |+ .|++||+.++ .++..+ .+|...|++++|+|++++|++++.|++|+|||+
T Consensus 242 dg~~l~sgs~D~t~~~i~lwd~~~g---~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~~l~S~s~D~~v~vWd~ 318 (393)
T d1sq9a_ 242 QGSLLAIAHDSNSFGCITLYETEFG---ERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDV 318 (393)
T ss_dssp STTEEEEEEEETTEEEEEEEETTTC---CEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEET
T ss_pred ccceeeeecCCCCcceeeecccccc---eeeeeeccccccccceeeeecccCceeeeccCCCCCeeEEECCCCEEEEEEC
Confidence 999999998 65 5999999987 344433 468899999999999999999999999999999
Q ss_pred CCCcEE-EeccCCCC---------------------eeEEEEeCCC----------CEEEEEECCCcEEEeC
Q 003236 798 TENKTL-TLSAHDKL---------------------VSSLAASTVN----------GMVASASHDKCVKIWK 837 (837)
Q Consensus 798 ~s~~~~-~l~~h~~~---------------------V~sla~spdg----------~~LaSgs~DG~I~IWd 837 (837)
.+++++ .+.+|... +.++.|.+.+ ..|++++.|+.|++|+
T Consensus 319 ~~g~~~~~l~gH~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ir~~~ 390 (393)
T d1sq9a_ 319 KTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFR 390 (393)
T ss_dssp TTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEE
T ss_pred CCCCEEEEECCcCCcccCCccEEEECCCCCEEEEcccceEEECccCceeccccCCCCEEEEEEcCCeEEEEe
Confidence 999988 66677543 4566666543 3588999999999985
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.95 E-value=8.9e-25 Score=231.26 Aligned_cols=262 Identities=23% Similarity=0.360 Sum_probs=204.0
Q ss_pred CCeEEcccCCCceEEeecCCCCCCCCccccccccCCCeeeeEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCC
Q 003236 506 DRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTE 585 (837)
Q Consensus 506 ~~~v~~Gs~D~~v~~w~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~H~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~ 585 (837)
+.++++|+.|++|++|..... +.+.++.+|.+.|.+++|+++ +|++|+.|+.+++|+..
T Consensus 27 g~~l~sgs~Dg~i~vWd~~~~-------------------~~~~~~~~h~~~V~~v~~~~~--~l~s~s~D~~~~~~~~~ 85 (342)
T d2ovrb2 27 GNRIVSGSDDNTLKVWSAVTG-------------------KCLRTLVGHTGGVWSSQMRDN--IIISGSTDRTLKVWNAE 85 (342)
T ss_dssp TTEEEEEETTSCEEEEETTTC-------------------CEEEECCCCSSCEEEEEEETT--EEEEEETTSCEEEEETT
T ss_pred CCEEEEEeCCCeEEEEECCCC-------------------CEEEEEeCCCCCEEEEEeCCC--ccccceecccccccccc
Confidence 468999999999999965432 346778999999999999975 99999999999999987
Q ss_pred CCeEEEEeccCCCCeEEE--------------------------------------EEcCCCCEEEEEeCCCeEEEEEcC
Q 003236 586 SFTVKSTLEEHTQWITDV--------------------------------------RFSPSLSRLATSSADRTVRVWDTE 627 (837)
Q Consensus 586 t~~~~~~l~~h~~~I~~l--------------------------------------~fspdg~~Latgs~Dg~I~IWDl~ 627 (837)
..........+...+... .+......+++++.|+.|++||..
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~d~~ 165 (342)
T d2ovrb2 86 TGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPE 165 (342)
T ss_dssp TTEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEECSSCEEEEETTSCEEEEEGG
T ss_pred cccceecccccceeEeeeecccccccccccceeEEEeecccccceeeeecccccceeeccccceeeeecCCCeEEEeecc
Confidence 765554443333322221 222334567888888999999988
Q ss_pred CCCceeEEeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeeEEecC-CCeeEEEEecCCCEEEEEEcCCeE
Q 003236 628 NPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ-SGATQMRFQPRLGRILAAAIENYI 706 (837)
Q Consensus 628 ~~~~~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~~-~~i~sl~~sp~g~~llags~dg~I 706 (837)
... .+..+.+|...+..+.+. + ..+++++.||.|++||++.++++..+..+ ..+.++.++ ++++++++.|+.|
T Consensus 166 ~~~-~~~~~~~~~~~~~~~~~~--~-~~l~s~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~s~d~~i 239 (342)
T d2ovrb2 166 TET-CLHTLQGHTNRVYSLQFD--G-IHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELK--DNILVSGNADSTV 239 (342)
T ss_dssp GTE-EEEEECCCSSCEEEEEEC--S-SEEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEEEE--TTEEEEEETTSCE
T ss_pred cce-eeEEEcCcccccccccCC--C-CEEEEEeCCCeEEEeecccceeeeEecccccceeEEecC--CCEEEEEcCCCEE
Confidence 654 467778888777777765 3 36779999999999999999988877753 446666555 5699999999999
Q ss_pred EEEECCCCeEEEEEcC---CCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEee-----cCCCceEEEEEe
Q 003236 707 SILDVETQVCRLKLQG---HKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELS-----CTGNKFHSCVFH 777 (837)
Q Consensus 707 ~iwDl~s~~~~~~l~~---h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~-----~~~~~I~sv~fs 777 (837)
++||+...+....+.. |...+.++.++ +.++++++ ||.|+|||++++ +++..+. .|...|++++|+
T Consensus 240 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~s~s~Dg~i~iwd~~tg---~~i~~~~~~~~~~~~~~v~~v~~s 314 (342)
T d2ovrb2 240 KIWDIKTGQCLQTLQGPNKHQSAVTCLQFN--KNFVITSSDDGTVKLWDLKTG---EFIRNLVTLESGGSGGVVWRIRAS 314 (342)
T ss_dssp EEEETTTCCEEEEECSTTSCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTC---CEEEEEEECTTGGGTCEEEEEEEC
T ss_pred EEEecccccccccccccceeeeceeecccC--CCeeEEEcCCCEEEEEECCCC---CEEEEEecccCCCCCCCEEEEEEC
Confidence 9999999888777765 55667777665 56888888 999999999988 4555543 466789999999
Q ss_pred CCCCEEEEEEcCC----eEEEEECCC
Q 003236 778 PTFPSLLVIGCYE----TLELWNMTE 799 (837)
Q Consensus 778 pdg~~L~sgs~dg----~I~IwDl~s 799 (837)
|++.+|++|+.|| .|++||+..
T Consensus 315 ~~~~~la~g~~dGt~~~~l~~~Df~~ 340 (342)
T d2ovrb2 315 NTKLVCAVGSRNGTEETKLLVLDFDV 340 (342)
T ss_dssp SSEEEEEEECSSSSSCCEEEEEECCC
T ss_pred CCCCEEEEEeCCCCCeeEEEEEeCCC
Confidence 9999999999888 499999864
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.94 E-value=2e-24 Score=223.25 Aligned_cols=260 Identities=19% Similarity=0.360 Sum_probs=212.3
Q ss_pred CCCeEEcccCCCceEEeecCCCCCCCCccccccccCCCeeeeEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEeC
Q 003236 505 MDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCT 584 (837)
Q Consensus 505 ~~~~v~~Gs~D~~v~~w~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~H~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~ 584 (837)
.++++++|+.|++|++|..... ..+.++.+|.+.|++++| ++++|++|+.|+.|++|++
T Consensus 24 d~~~l~sgs~Dg~i~vWd~~~~-------------------~~~~~l~~H~~~V~~v~~--~~~~l~s~s~D~~i~~~~~ 82 (293)
T d1p22a2 24 DDQKIVSGLRDNTIKIWDKNTL-------------------ECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDV 82 (293)
T ss_dssp CSSEEEEEESSSCEEEEESSSC-------------------CEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEES
T ss_pred cCCEEEEEeCCCeEEEEECCCC-------------------cEEEEEecCCCCEeeeec--ccceeeccccccccccccc
Confidence 3578999999999999965322 356788999999999987 5789999999999999999
Q ss_pred CCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCc--eeEEeeccccceEEEEEcCCCCeEEEEEeCC
Q 003236 585 ESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDY--SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN 662 (837)
Q Consensus 585 ~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~~~~--~~~~~~~h~~~V~sl~fspdg~~llasgs~D 662 (837)
..+........+..... .+.+....++++..++.+.+||...... ....+..|...|.++.+.+. .+++++.|
T Consensus 83 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~~~~~s~d 157 (293)
T d1p22a2 83 NTGEMLNTLIHHCEAVL--HLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDK---YIVSASGD 157 (293)
T ss_dssp SSCCEEEEECCCCSCEE--EEECCTTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEETT---EEEEEETT
T ss_pred ccccccccccccccccc--cccccccceeecccccceeEeeccccccccccccccccccccccceeccc---ccccccCC
Confidence 99888877765554443 3445667899999999999999986543 34556778889988888754 56688889
Q ss_pred CcEEEEECCCCeeeeEEec-CCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEcCCCCEEEE
Q 003236 663 SEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLAS 741 (837)
Q Consensus 663 g~I~vwDl~t~~~i~~~~~-~~~i~sl~~sp~g~~llags~dg~I~iwDl~s~~~~~~l~~h~~~V~sl~~spdg~~Las 741 (837)
+.|++||+++++.+..+.. ...+..+.++ +..+++++.|+.|++||+++...+..+.+|...|.+ +++++.+|++
T Consensus 158 ~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~--~~~~~~~l~s 233 (293)
T d1p22a2 158 RTIKVWNTSTCEFVRTLNGHKRGIACLQYR--DRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRC--IRFDNKRIVS 233 (293)
T ss_dssp SEEEEEETTTCCEEEEEECCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEE--EECCSSEEEE
T ss_pred CceeeecCCCCcEEEEEcccccccccccCC--CCeEEEecCCCEEEEEecccceeeeeecccceeeee--ccccceEEEE
Confidence 9999999999999888775 3345555554 578999999999999999999999999999888875 4567889999
Q ss_pred Ee-CCeEEEEEcCCCC------CceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEE
Q 003236 742 VS-DELVRVWSIGSGS------KGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWN 796 (837)
Q Consensus 742 gs-Dg~I~IwDl~s~~------~~~~i~~~~~~~~~I~sv~fspdg~~L~sgs~dg~I~IwD 796 (837)
++ ||.|+|||+.... ...++..+..|...|.+++|+ +.+|++++.|++|+|||
T Consensus 234 g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~H~~~V~~v~~d--~~~l~s~s~Dg~i~iWD 293 (293)
T d1p22a2 234 GAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFD--EFQIVSSSHDDTILIWD 293 (293)
T ss_dssp EETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEEC--SSCEEECCSSSEEEEEC
T ss_pred EcCCCEEEEEECCCCccccccCCceeeEEecCCCCCEEEEEEc--CCEEEEEecCCEEEEeC
Confidence 88 9999999986432 235678888999999999995 56799999999999997
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.94 E-value=7.5e-27 Score=251.33 Aligned_cols=278 Identities=7% Similarity=-0.055 Sum_probs=217.2
Q ss_pred CCCCCeEEEEEcCCCCEEEEEECCC--cEEEEeCCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCC
Q 003236 553 ASTSKVESCHFSPDGKLLATGGHDK--KAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPD 630 (837)
Q Consensus 553 ~H~~~V~sl~fSpdg~~Lasgs~Dg--~I~VWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~~~ 630 (837)
+|...|.+++|+|||++|++++.+. .|++||+++++.. .+..|...|.+++|+|++++|++++.++.+++|++.+..
T Consensus 40 ~~~~~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~~~~~-~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~ 118 (360)
T d1k32a3 40 PEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKAE-KFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGK 118 (360)
T ss_dssp SCCSCEEEEEECSSSEEEEEEEETTEEEEEEEETTTCCEE-ECCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCC
T ss_pred cCCCCEEEEEECCCCCEEEEEEcCCCCEEEEEECCCCcEE-EeeCCCceEEeeeecccccccceeccccccccccccccc
Confidence 6999999999999999998876553 7999999887665 566799999999999999999999999999999999866
Q ss_pred ceeEEeeccccceEEEEEcCCCCeEEEEEe---------CCCcEEEEECCCCeeeeEEecCCCeeEEEEecCCCEEEEEE
Q 003236 631 YSLRTFTGHSTTVMSLDFHPSKEDLLCSCD---------NNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAA 701 (837)
Q Consensus 631 ~~~~~~~~h~~~V~sl~fspdg~~llasgs---------~Dg~I~vwDl~t~~~i~~~~~~~~i~sl~~sp~g~~llags 701 (837)
. ...+..|...+.+++|+|++..++++.. .++.+++||+.+++..........+..+.|+|+++.|++++
T Consensus 119 ~-~~~~~~~~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~s 197 (360)
T d1k32a3 119 P-TVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAATTENSHDYAPAFDADSKNLYYLS 197 (360)
T ss_dssp E-EEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEEEECSCSSSBEEEEEECTTSCEEEEEE
T ss_pred e-eeeeecccccccchhhccceeeeeeeccccccceeeccccceeeeccccCceeeecccccccccccccCCCCEEEEEe
Confidence 4 6777889999999999999987765542 34569999999998887777778889999999999999999
Q ss_pred cCCeEEEEECCCCe-------EEEEEcCCCCCEEEEEEcCCCCEEEEEe-CC---eEEEEEcCCCCCceeEEEeecCCCc
Q 003236 702 IENYISILDVETQV-------CRLKLQGHKNQVHSVCWNTSGEYLASVS-DE---LVRVWSIGSGSKGECIHELSCTGNK 770 (837)
Q Consensus 702 ~dg~I~iwDl~s~~-------~~~~l~~h~~~V~sl~~spdg~~Lasgs-Dg---~I~IwDl~s~~~~~~i~~~~~~~~~ 770 (837)
.++.+.+||..... ....+..|...+..+.|++++..++++. +. ..++|.+.... .....+..+...
T Consensus 198 ~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~ 275 (360)
T d1k32a3 198 YRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDP--GDYRMIIPLESS 275 (360)
T ss_dssp SCCCCCEECSSSSCEECCSCBEEEEEESSTTCCCGGGCCCGGGSCCCCCCCCTTGGGGCEECSCCC--BCEEEEEECSSE
T ss_pred CCCceEcccccccceeeccccceEEEecccCccccceECCCcCcccccceeecccccceeecccCc--CceeEeeecCCC
Confidence 99999999976543 2344445666666677888877766554 22 23344443221 122333344455
Q ss_pred eEEEEEeCCC---CEEEEEEcCCeEEEEECCCCcEEEeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 003236 771 FHSCVFHPTF---PSLLVIGCYETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 837 (837)
Q Consensus 771 I~sv~fspdg---~~L~sgs~dg~I~IwDl~s~~~~~l~~h~~~V~sla~spdg~~LaSgs~DG~I~IWd 837 (837)
+..+.+...+ .+++.++.++.|++||+.+++...+. +.|.+++|+|||++|++++.||.|++||
T Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~---~~v~~~~~SpDG~~l~~~~~Dg~i~v~d 342 (360)
T d1k32a3 276 ILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKVTEVK---NNLTDLRLSADRKTVMVRKDDGKIYTFP 342 (360)
T ss_dssp EEEEECCCCCSHHHHHHCCCCCEEEEEEETTTCCEEEEE---EEEEEEEECTTSCEEEEEETTSCEEEEE
T ss_pred ceEEEEEecCCCeeEEEecCCCCEEEEEECCCCeEEEec---CCcCEEEECCCCCEEEEEECCCeEEEEE
Confidence 5555555444 35677778889999999998765443 4589999999999999999999999996
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.94 E-value=2e-25 Score=235.54 Aligned_cols=250 Identities=12% Similarity=0.091 Sum_probs=196.3
Q ss_pred eEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCc--eeEEeeccccceEEEEEcCCCCeEEEEEeCCCcE
Q 003236 588 TVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDY--SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEI 665 (837)
Q Consensus 588 ~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~~~~--~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I 665 (837)
+.+....+|.+.|++|+|+|++++||+|+.||+|+|||+.+... .+....+|...|.+++|+|++..+|++|+.|+.|
T Consensus 2 ~~v~~~~~h~d~I~~l~fsp~~~~L~s~s~Dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~f~~~~~~~l~sg~~d~~v 81 (342)
T d1yfqa_ 2 QIVQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEI 81 (342)
T ss_dssp EEEECSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCE
T ss_pred CeEEcCCCCCCCEEEEEEeCCCCEEEEEECCCeEEEEEccCCCcceEEEEecCCCCCEEEEEEeCCCCCEEEEcccccce
Confidence 46677789999999999999999999999999999999986554 2344457999999999999888899999999999
Q ss_pred EEEECCCCeeeeEEecC--CCeeEEEEecCCCEEEEEEcCCeEEEEECCCC----eEEEEEcCC--CCCEEEEEEcCCCC
Q 003236 666 RYWSINNGSCAGVFKCQ--SGATQMRFQPRLGRILAAAIENYISILDVETQ----VCRLKLQGH--KNQVHSVCWNTSGE 737 (837)
Q Consensus 666 ~vwDl~t~~~i~~~~~~--~~i~sl~~sp~g~~llags~dg~I~iwDl~s~----~~~~~l~~h--~~~V~sl~~spdg~ 737 (837)
++|++............ .......+.++...+++++.++.+++||++.. ........+ ......+.+.+.+.
T Consensus 82 ~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (342)
T d1yfqa_ 82 LKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSS 161 (342)
T ss_dssp EEECSSSSSSEEECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEECSS
T ss_pred eeeecccccccccccccccccccccccccccccccccccccccceeeccccccceeeecccccccccceeeeeeeeccCC
Confidence 99999987766665542 23455666778899999999999999998653 222233222 23445667778888
Q ss_pred EEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEe-CCCCEEEEEEcCCeEEEEECCCCcEE------------
Q 003236 738 YLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFH-PTFPSLLVIGCYETLELWNMTENKTL------------ 803 (837)
Q Consensus 738 ~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fs-pdg~~L~sgs~dg~I~IwDl~s~~~~------------ 803 (837)
.+++++ |+.|++||+..................+.++.+. .++..+++++.|+.+.+|++......
T Consensus 162 ~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~v~~~~~~~~~~~~~~~~~~~~~ 241 (342)
T d1yfqa_ 162 RLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCH 241 (342)
T ss_dssp EEEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECC
T ss_pred ceeeecCCCcEEEEecccCcccceeeeecccccceeeeEeecCCCCEEEeecCCCeEEEEEecCCcceeeccccceeeee
Confidence 888888 9999999998876544555555555556665554 46778999999999999997653211
Q ss_pred ----EeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 003236 804 ----TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 837 (837)
Q Consensus 804 ----~l~~h~~~V~sla~spdg~~LaSgs~DG~I~IWd 837 (837)
....|...|++|+|+|++++||||+.||.|+|||
T Consensus 242 ~~~~~~~~~~~~v~~l~~sp~~~~lasg~~Dg~v~vWD 279 (342)
T d1yfqa_ 242 RLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWN 279 (342)
T ss_dssp CCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEE
T ss_pred eeccCCCcccccceeEEecCCccEEEEECCCCEEEEEE
Confidence 1235667899999999999999999999999997
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.93 E-value=5.7e-24 Score=235.06 Aligned_cols=264 Identities=17% Similarity=0.150 Sum_probs=194.8
Q ss_pred CCCeEEcccCCCceEEeecCCCCCCCCccccccccCCCeeeeEEEEecCCCCCeEEEEE------cC-CCCEEEEEECCC
Q 003236 505 MDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHF------SP-DGKLLATGGHDK 577 (837)
Q Consensus 505 ~~~~v~~Gs~D~~v~~w~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~H~~~V~sl~f------Sp-dg~~Lasgs~Dg 577 (837)
.+.+++++|.|++|++|........ .+.........|...+..+.+ +. ++.++++++.||
T Consensus 23 ~~~~l~S~S~D~~iriWd~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~dg 89 (393)
T d1sq9a_ 23 CNSFTVSCSGDGYLKVWDNKLLDNE-------------NPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFSG 89 (393)
T ss_dssp CSSEEEEEETTSEEEEEESBCCTTC-------------CGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEETTS
T ss_pred eCCEEEEEECCCeEEEEECCCCCCC-------------cccceeEeeeeccCCceEeeeEeeeccCCCCCcEEEEEeCCC
Confidence 3468899999999999964332111 011111222344444433322 11 345788999999
Q ss_pred cEEEEeCCCCeE----E-EEe-----ccCCCCeEEEEEcCC-----CCEEEEEeCCCeEEEEEcCCCCc-----------
Q 003236 578 KAVLWCTESFTV----K-STL-----EEHTQWITDVRFSPS-----LSRLATSSADRTVRVWDTENPDY----------- 631 (837)
Q Consensus 578 ~I~VWd~~t~~~----~-~~l-----~~h~~~I~~l~fspd-----g~~Latgs~Dg~I~IWDl~~~~~----------- 631 (837)
.|++|++..... . ... ..+...+..++|.++ +.++++++.||+|++|++.....
T Consensus 90 ~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~ 169 (393)
T d1sq9a_ 90 DLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSP 169 (393)
T ss_dssp CEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCC
T ss_pred cEEEEEccCCCceeeeeccccceeeeccCCCceEEEEEecCCCcccccEEEEEcCCCcEEEEEeecCCcccceeeeeecc
Confidence 999998653211 1 111 235566788888775 46899999999999999853210
Q ss_pred ------eeEEeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeeEEec-------CCCeeEEEEecCCCEEE
Q 003236 632 ------SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-------QSGATQMRFQPRLGRIL 698 (837)
Q Consensus 632 ------~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~-------~~~i~sl~~sp~g~~ll 698 (837)
.......+...+.+++|+|++ +|++|+.|+.|++||+.+++++..+.. ...|.+++|+|++.+|+
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~v~~s~dg--~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~l~ 247 (393)
T d1sq9a_ 170 TLELQGTVESPMTPSQFATSVDISERG--LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLA 247 (393)
T ss_dssp EEEEEEEECCSSSSCCCCCEEEECTTS--EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEE
T ss_pred ceecccceecccCCCCcEEEEEECCCC--EEEEEeCCCcEEEEeecccccccccccccccccccceEEEcccccccceee
Confidence 011223355678999999986 778999999999999999998876653 45799999999999999
Q ss_pred EEEcCC---eEEEEECCCCeEEEEEc-------------CCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeE
Q 003236 699 AAAIEN---YISILDVETQVCRLKLQ-------------GHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECI 761 (837)
Q Consensus 699 ags~dg---~I~iwDl~s~~~~~~l~-------------~h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i 761 (837)
+++.|+ .|++||++++.++..+. +|...|++|+|+|++++|++++ |++|+|||+.++ .++
T Consensus 248 sgs~D~t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~~l~S~s~D~~v~vWd~~~g---~~~ 324 (393)
T d1sq9a_ 248 IAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTK---ERI 324 (393)
T ss_dssp EEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTT---EEE
T ss_pred eecCCCCcceeeecccccceeeeeeccccccccceeeeecccCceeeeccCCCCCeeEEECCCCEEEEEECCCC---CEE
Confidence 999986 59999999998887764 7999999999999999999999 999999999988 889
Q ss_pred EEeecCCCceE----EEEEeCCCCEEEEE
Q 003236 762 HELSCTGNKFH----SCVFHPTFPSLLVI 786 (837)
Q Consensus 762 ~~~~~~~~~I~----sv~fspdg~~L~sg 786 (837)
.++.+|...|. .++|++++..++++
T Consensus 325 ~~l~gH~~~v~~~~~~~~~~~~~~~~~~~ 353 (393)
T d1sq9a_ 325 TTLNMHCDDIEIEEDILAVDEHGDSLAEP 353 (393)
T ss_dssp EEEECCGGGCSSGGGCCCBCTTSCBCSSC
T ss_pred EEECCcCCcccCCccEEEECCCCCEEEEc
Confidence 99998877664 46788887766543
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Probab=99.93 E-value=1.8e-22 Score=211.24 Aligned_cols=260 Identities=12% Similarity=0.116 Sum_probs=216.0
Q ss_pred EEEEECCCcEEEEeCCCCeEEEEeccCCCCeEEEEEcCCCCEEE-EEeCCCeEEEEEcCCCCceeEEeeccccceEEEEE
Q 003236 570 LATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLA-TSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDF 648 (837)
Q Consensus 570 Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~I~~l~fspdg~~La-tgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~sl~f 648 (837)
+++++.|++|.|||+++++.+.++... ..+..++|+|||++|+ +++.++.|++||+.+++. +..+..+. .+..++|
T Consensus 5 yV~~~~~~~v~v~D~~t~~~~~~i~~g-~~p~~va~spdG~~l~v~~~~~~~i~v~d~~t~~~-~~~~~~~~-~~~~~~~ 81 (301)
T d1l0qa2 5 YIANSESDNISVIDVTSNKVTATIPVG-SNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNV-IATVPAGS-SPQGVAV 81 (301)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEEECS-SSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEE-EEEEECSS-SEEEEEE
T ss_pred EEEECCCCEEEEEECCCCeEEEEEECC-CCceEEEEeCCCCEEEEEECCCCEEEEEECCCCce-eeeeeccc-ccccccc
Confidence 345678999999999999999988644 5678999999999875 566789999999998664 66666554 5789999
Q ss_pred cCCCCeEEEEEeCCCcEEEEECCCCeeeeEEecCCCeeEEEEecCCCEEEEEEc-CCeEEEEECCCCeEEEEEcCCCCCE
Q 003236 649 HPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAI-ENYISILDVETQVCRLKLQGHKNQV 727 (837)
Q Consensus 649 spdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~~~~i~sl~~sp~g~~llags~-dg~I~iwDl~s~~~~~~l~~h~~~V 727 (837)
++++..+++++..++.+.+|+..+++....+.......++.|+|++..+++++. ++.+.+|+..+...+..+.. ...+
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 160 (301)
T d1l0qa2 82 SPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSV-GRSP 160 (301)
T ss_dssp CTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEEC-CSSE
T ss_pred ccccccccccccccceeeecccccceeeeeccccccceEEEeecCCCeeeeeeccccceeeeeccccceeeeccc-CCCc
Confidence 999998998998999999999999999999998889999999999998876665 67899999999998888874 4568
Q ss_pred EEEEEcCCCCEEEEEe--CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcC---CeEEEEECCCCcE
Q 003236 728 HSVCWNTSGEYLASVS--DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCY---ETLELWNMTENKT 802 (837)
Q Consensus 728 ~sl~~spdg~~Lasgs--Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fspdg~~L~sgs~d---g~I~IwDl~s~~~ 802 (837)
.++++++++.+++++. ++.+.+|+.... ....... ....+..++|++++..+++++.+ +.|++||+.+++.
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~-~~~~~~~~~~~~~g~~~~v~~~~~~~~~v~v~D~~t~~~ 236 (301)
T d1l0qa2 161 KGIAVTPDGTKVYVANFDSMSISVIDTVTN---SVIDTVK-VEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKI 236 (301)
T ss_dssp EEEEECTTSSEEEEEETTTTEEEEEETTTT---EEEEEEE-CSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEE
T ss_pred eEEEeeccccceeeecccccccccccccce---eeeeccc-ccCCcceeeccccccccccccccceeeeeeeeecCCCeE
Confidence 8999999999888877 457888887665 3444433 34567889999999998877654 4799999999998
Q ss_pred EEeccCCCCeeEEEEeCCCCEE-EEEECCCcEEEeC
Q 003236 803 LTLSAHDKLVSSLAASTVNGMV-ASASHDKCVKIWK 837 (837)
Q Consensus 803 ~~l~~h~~~V~sla~spdg~~L-aSgs~DG~I~IWd 837 (837)
+....+...+.+++|+|||++| ++++.|+.|+|||
T Consensus 237 ~~~~~~~~~~~~va~spdg~~l~va~~~~~~i~v~D 272 (301)
T d1l0qa2 237 TARIPVGPDPAGIAVTPDGKKVYVALSFCNTVSVID 272 (301)
T ss_dssp EEEEECCSSEEEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred EEEEcCCCCEEEEEEeCCCCEEEEEECCCCeEEEEE
Confidence 8655566778999999999976 5777899999997
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.92 E-value=1.8e-23 Score=219.22 Aligned_cols=249 Identities=12% Similarity=0.167 Sum_probs=196.8
Q ss_pred EEcccCCCceEEeecCCCCCCCCccccccccCCCeeeeEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCe
Q 003236 509 VDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFT 588 (837)
Q Consensus 509 v~~Gs~D~~v~~w~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~H~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~ 588 (837)
+++|+.|+.|++|.... ...+|...|.+++|++++ .+++++.|++|++|++...
T Consensus 24 l~sgs~Dg~v~~Wd~~~------------------------~~~~h~~~V~~~~~~~~~-~~~s~s~D~~v~~w~~~~~- 77 (287)
T d1pgua2 24 LISGSYDGRIMEWSSSS------------------------MHQDHSNLIVSLDNSKAQ-EYSSISWDDTLKVNGITKH- 77 (287)
T ss_dssp TEEEETTSCEEETTTTE------------------------EECCCCSCEEEEECCSTT-CCEEEETTTEEEETTEEEE-
T ss_pred EEEEeCCCeEEEEECCC------------------------CCCCCCCCEEEEEecCCC-eEEEEeecccccccccccc-
Confidence 68999999999994321 135899999999999765 6789999999999986532
Q ss_pred EEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeEEeeccccceEEEEEcCCCCeEEEEEeCCCcEEEE
Q 003236 589 VKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYW 668 (837)
Q Consensus 589 ~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vw 668 (837)
.+...+.++.+.+++..++++ .++.+.+|+..++.. +..+.. ...+ .++++++..+++++..++.|++|
T Consensus 78 ------~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~-~~~~--~~~~~~~~~~~v~~~~~~~v~~~ 146 (287)
T d1pgua2 78 ------EFGSQPKVASANNDGFTAVLT-NDDDLLILQSFTGDI-IKSVRL-NSPG--SAVSLSQNYVAVGLEEGNTIQVF 146 (287)
T ss_dssp ------ECSSCEEEEEECSSSEEEEEE-TTSEEEEEETTTCCE-EEEEEC-SSCE--EEEEECSSEEEEEETTTSCEEEE
T ss_pred ------ccccceeeeeeccCCceEEEe-ecccceeeeccceee-eeeccc-ccee--eeeeccCcceeeeccccceeeee
Confidence 134567889999887766665 566788999887654 444443 3334 34556666666566556689999
Q ss_pred ECCCCeeeeEEe--cCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEE-EEcCCCCCEEEEEEcCC----------
Q 003236 669 SINNGSCAGVFK--CQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRL-KLQGHKNQVHSVCWNTS---------- 735 (837)
Q Consensus 669 Dl~t~~~i~~~~--~~~~i~sl~~sp~g~~llags~dg~I~iwDl~s~~~~~-~l~~h~~~V~sl~~spd---------- 735 (837)
++........+. +...+.+++|+|++.+|++++.|+.|++||+.++.... .+..|...|.+++|+|.
T Consensus 147 ~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~ 226 (287)
T d1pgua2 147 KLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIE 226 (287)
T ss_dssp ETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEECCSCCCSSCEEEEEECCCC------CCS
T ss_pred eccccceeeeeeeccCCceeEEEeccCccccccccccccccceeecccccccccccccccccceeeecccccccccccCC
Confidence 998766555544 35679999999999999999999999999999987665 35679999999999874
Q ss_pred CCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEEC
Q 003236 736 GEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNM 797 (837)
Q Consensus 736 g~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fspdg~~L~sgs~dg~I~IwDl 797 (837)
+.+|++++ |+.|+|||++... ..+..+.+|...|++++|+|++ .|++++.|+.|++||+
T Consensus 227 ~~~l~sgs~D~~i~iw~~~~~~--~~~~~~~~h~~~V~~v~~~~~~-~l~s~g~D~~v~iW~i 286 (287)
T d1pgua2 227 EDLVATGSLDTNIFIYSVKRPM--KIIKALNAHKDGVNNLLWETPS-TLVSSGADACIKRWNV 286 (287)
T ss_dssp CCEEEEEETTSCEEEEESSCTT--CCEEETTSSTTCEEEEEEEETT-EEEEEETTSCEEEEEE
T ss_pred CCeeEeecCCCeEEEEECCCCC--eEEEEeCCCCCCeEEEEECCCC-EEEEEECCCeEEEEEE
Confidence 46899988 9999999997753 5677788899999999999986 5899999999999996
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.92 E-value=8.3e-23 Score=228.61 Aligned_cols=313 Identities=9% Similarity=0.012 Sum_probs=227.0
Q ss_pred cCCCeEEcccCCCceEEeecCCCCCCCCccccccccCCCeeeeEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEe
Q 003236 504 DMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWC 583 (837)
Q Consensus 504 ~~~~~v~~Gs~D~~v~~w~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~H~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd 583 (837)
..+.++++.+.|+.|++|+.... +.+.++..|. .+..++|||||++|++++.|++|++||
T Consensus 30 ~~~~~~V~~~~dg~v~vwD~~t~-------------------~~~~~l~~g~-~~~~vafSPDGk~l~~~~~d~~v~vwd 89 (426)
T d1hzua2 30 LPNLFSVTLRDAGQIALVDGDSK-------------------KIVKVIDTGY-AVHISRMSASGRYLLVIGRDARIDMID 89 (426)
T ss_dssp GGGEEEEEETTTTEEEEEETTTC-------------------SEEEEEECCS-SEEEEEECTTSCEEEEEETTSEEEEEE
T ss_pred CCeEEEEEEcCCCEEEEEECCCC-------------------cEEEEEeCCC-CeeEEEECCCCCEEEEEeCCCCEEEEE
Confidence 34456788888999999954322 3456677775 599999999999999999999999999
Q ss_pred CCCCeEEE--E---eccCCCCeEEEEEcCCCCEEEEE-eCCCeEEEEEcCCCCceeEEeecccc-----------ceEEE
Q 003236 584 TESFTVKS--T---LEEHTQWITDVRFSPSLSRLATS-SADRTVRVWDTENPDYSLRTFTGHST-----------TVMSL 646 (837)
Q Consensus 584 ~~t~~~~~--~---l~~h~~~I~~l~fspdg~~Latg-s~Dg~I~IWDl~~~~~~~~~~~~h~~-----------~V~sl 646 (837)
+.+++... . ..+|...+.+++|+|||++|+++ ..++.+++||..+... ...+..|.. ....+
T Consensus 90 ~~t~~~~~~~~i~~~~~~~~~~~s~~~spDG~~l~v~~~~~~~v~i~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i 168 (426)
T d1hzua2 90 LWAKEPTKVAEIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEP-KQIVSTRGMTVDTQTYHPEPRVAAI 168 (426)
T ss_dssp TTSSSCEEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCE-EEEEECCEECSSSCCEESCCCEEEE
T ss_pred ccCCceeEEEEEeCCCCCcceEEeeeecCCCCEEEEeecCCCeEEEEcCCccce-eEEeeccCCCccceeecCCCceeEE
Confidence 99876443 2 23567778888899999987554 5789999999998664 445444443 34556
Q ss_pred EEcCCCCeEEEEEeCCCcEEEEECCCCee--eeEEecCCCeeEEEEecCCCEEEEEEc-CCeEEEEECCCCeEEEEEcCC
Q 003236 647 DFHPSKEDLLCSCDNNSEIRYWSINNGSC--AGVFKCQSGATQMRFQPRLGRILAAAI-ENYISILDVETQVCRLKLQGH 723 (837)
Q Consensus 647 ~fspdg~~llasgs~Dg~I~vwDl~t~~~--i~~~~~~~~i~sl~~sp~g~~llags~-dg~I~iwDl~s~~~~~~l~~h 723 (837)
.+++++..++++....+.+.+++...... +..+.....+..+.|+|++++++++.. ++.+.++|..+++.+..+...
T Consensus 169 ~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 248 (426)
T d1hzua2 169 IASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLADGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVG 248 (426)
T ss_dssp EECSSSSEEEEEETTTTEEEEEECSSSSSCEEEEEECCSSEEEEEECTTSCEEEEEETTCSEEEEEETTTTEEEEEEECS
T ss_pred EECCCCCEEEEecCCCCeEEEEEeccccceeeEEeccCCccEeeeECCCCcEEEeeeecccceeeeecccccEEEEeccC
Confidence 66666666665555566666666665443 334455667889999999999888876 468999999999888776532
Q ss_pred --CCCEEEEEEcCCCC--EEEEEe--CCeEEEEEcCCCC----CceeEEEeecCCCceEEEEEeCCCCEEEE-------E
Q 003236 724 --KNQVHSVCWNTSGE--YLASVS--DELVRVWSIGSGS----KGECIHELSCTGNKFHSCVFHPTFPSLLV-------I 786 (837)
Q Consensus 724 --~~~V~sl~~spdg~--~Lasgs--Dg~I~IwDl~s~~----~~~~i~~~~~~~~~I~sv~fspdg~~L~s-------g 786 (837)
......+.+...+. .++... |+.+.+|+..... ..+....+.+|...+..++|+|++++|++ +
T Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~~~~~~~~~~~~~~~~~~~~l~g~~~~v~~v~~sPdg~~l~v~~~~~~s~ 328 (426)
T d1hzua2 249 KTPHPGRGANFVHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDA 328 (426)
T ss_dssp SCCCCSCCEEEEETTTEEEEEEECTTTCEEEEEECCTTTCTTTBTSEEEEEECSSSCCCCEECCTTCSEEEECCTTCSSH
T ss_pred CcccccceeeeecCCCCceEEeccCCCceEEEeeccccccccccceEeEEEecCCCceeEEEcCCCCceEEEeecCCCCc
Confidence 22333344433332 222222 7788898876542 13577888999999999999999999996 3
Q ss_pred EcCCeEEEEECCCCcEE-E---------eccCCCCeeEEEEeCCCCEEEE-E----ECCCcEEEeC
Q 003236 787 GCYETLELWNMTENKTL-T---------LSAHDKLVSSLAASTVNGMVAS-A----SHDKCVKIWK 837 (837)
Q Consensus 787 s~dg~I~IwDl~s~~~~-~---------l~~h~~~V~sla~spdg~~LaS-g----s~DG~I~IWd 837 (837)
..+++|+|||+.+++.. + +..|...|.+++|||||++|+. + +.||.|+|||
T Consensus 329 ~~~~tv~vwd~~t~~~~~~~~~~~~~~~~~~~~~rv~~~~fSpDGk~i~vs~~~~~~~~~~i~v~D 394 (426)
T d1hzua2 329 RISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVD 394 (426)
T ss_dssp HHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCCEEEEEECSSSSEEEEEECCCTTSCCEEEEEE
T ss_pred ccCCEEEEEECCCCCcCeEEeccchhcccCCCCccEEEEEECCCCCEEEEEEecCCCCCCeEEEEE
Confidence 45679999999988754 2 2356677999999999997643 3 3578899997
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Probab=99.90 E-value=2e-20 Score=195.48 Aligned_cols=267 Identities=15% Similarity=0.180 Sum_probs=213.0
Q ss_pred EcccCCCceEEeecCCCCCCCCccccccccCCCeeeeEEEEecCCCCCeEEEEEcCCCCEEE-EEECCCcEEEEeCCCCe
Q 003236 510 DDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLA-TGGHDKKAVLWCTESFT 588 (837)
Q Consensus 510 ~~Gs~D~~v~~w~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~H~~~V~sl~fSpdg~~La-sgs~Dg~I~VWd~~t~~ 588 (837)
++++.|++|.+|+.... +.+..++.. ..+..++|+|||++|+ +++.++.|++||+.+++
T Consensus 6 V~~~~~~~v~v~D~~t~-------------------~~~~~i~~g-~~p~~va~spdG~~l~v~~~~~~~i~v~d~~t~~ 65 (301)
T d1l0qa2 6 IANSESDNISVIDVTSN-------------------KVTATIPVG-SNPMGAVISPDGTKVYVANAHSNDVSIIDTATNN 65 (301)
T ss_dssp EEETTTTEEEEEETTTT-------------------EEEEEEECS-SSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTE
T ss_pred EEECCCCEEEEEECCCC-------------------eEEEEEECC-CCceEEEEeCCCCEEEEEECCCCEEEEEECCCCc
Confidence 35667788888854322 123334333 4478999999999875 56678999999999999
Q ss_pred EEEEeccCCCCeEEEEEcCCCCEEEE-EeCCCeEEEEEcCCCCceeEEeeccccceEEEEEcCCCCeEEEEEeCCCcEEE
Q 003236 589 VKSTLEEHTQWITDVRFSPSLSRLAT-SSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRY 667 (837)
Q Consensus 589 ~~~~l~~h~~~I~~l~fspdg~~Lat-gs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~v 667 (837)
.+..+..|. .+..++|++++.++++ +..++.+.+|+..++.. ...+. +...+.+++|+|++..+++++..++.+.+
T Consensus 66 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~dg~~~~~~~~~~~~~~~ 142 (301)
T d1l0qa2 66 VIATVPAGS-SPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTV-AGTVK-TGKSPLGLALSPDGKKLYVTNNGDKTVSV 142 (301)
T ss_dssp EEEEEECSS-SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEE-EEEEE-CSSSEEEEEECTTSSEEEEEETTTTEEEE
T ss_pred eeeeeeccc-cccccccccccccccccccccceeeeccccccee-eeecc-ccccceEEEeecCCCeeeeeeccccceee
Confidence 999987765 4789999999886654 55678999999987653 44444 44567899999999999889988999999
Q ss_pred EECCCCeeeeEEecCCCeeEEEEecCCCEEEEEEcC-CeEEEEECCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEe---
Q 003236 668 WSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIE-NYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS--- 743 (837)
Q Consensus 668 wDl~t~~~i~~~~~~~~i~sl~~sp~g~~llags~d-g~I~iwDl~s~~~~~~l~~h~~~V~sl~~spdg~~Lasgs--- 743 (837)
|+..+...+..+.....+..+.+++++..+++++.+ +.+.+|+.........+. +...+..++|++++..++++.
T Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~~v~~~~~ 221 (301)
T d1l0qa2 143 INTVTKAVINTVSVGRSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVK-VEAAPSGIAVNPEGTKAYVTNVDK 221 (301)
T ss_dssp EETTTTEEEEEEECCSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE-CSSEEEEEEECTTSSEEEEEEECS
T ss_pred eeccccceeeecccCCCceEEEeeccccceeeecccccccccccccceeeeeccc-ccCCcceeeccccccccccccccc
Confidence 999999999999988889999999999999888876 677888888877777666 445678899999999887654
Q ss_pred -CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEE-EEcCCeEEEEECCCCcEEE
Q 003236 744 -DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLV-IGCYETLELWNMTENKTLT 804 (837)
Q Consensus 744 -Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fspdg~~L~s-gs~dg~I~IwDl~s~~~~~ 804 (837)
++.|++||+.++ +.+..+.. ...+..++|+|||++|++ ++.++.|++||+.+++++.
T Consensus 222 ~~~~v~v~D~~t~---~~~~~~~~-~~~~~~va~spdg~~l~va~~~~~~i~v~D~~t~~~~~ 280 (301)
T d1l0qa2 222 YFNTVSMIDTGTN---KITARIPV-GPDPAGIAVTPDGKKVYVALSFCNTVSVIDTATNTITA 280 (301)
T ss_dssp SCCEEEEEETTTT---EEEEEEEC-CSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEE
T ss_pred eeeeeeeeecCCC---eEEEEEcC-CCCEEEEEEeCCCCEEEEEECCCCeEEEEECCCCeEEE
Confidence 358999999887 56666554 456899999999998864 5568899999999998873
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Probab=99.89 E-value=2e-21 Score=218.46 Aligned_cols=309 Identities=10% Similarity=-0.010 Sum_probs=218.4
Q ss_pred CCCeEEcccCCCceEEeecCCCCCCCCccccccccCCCeeeeEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEeC
Q 003236 505 MDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCT 584 (837)
Q Consensus 505 ~~~~v~~Gs~D~~v~~w~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~H~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~ 584 (837)
..-++++.+.|+.|.+|+.... ..+..+..|. .+..++|||||++|++++.|++|++||+
T Consensus 31 ~~~~~v~~~d~g~v~v~D~~t~-------------------~v~~~~~~g~-~~~~v~fSpDG~~l~~~s~dg~v~~~d~ 90 (432)
T d1qksa2 31 ENLFSVTLRDAGQIALIDGSTY-------------------EIKTVLDTGY-AVHISRLSASGRYLFVIGRDGKVNMIDL 90 (432)
T ss_dssp GGEEEEEETTTTEEEEEETTTC-------------------CEEEEEECSS-CEEEEEECTTSCEEEEEETTSEEEEEET
T ss_pred CcEEEEEEcCCCEEEEEECCCC-------------------cEEEEEeCCC-CeeEEEECCCCCEEEEEcCCCCEEEEEe
Confidence 3345688889999999954332 3456666664 5999999999999999999999999999
Q ss_pred CCCeE--EEE---eccCCCCeEEEEEcCCCCEE-EEEeCCCeEEEEEcCCCCceeEEeec-----------cccceEEEE
Q 003236 585 ESFTV--KST---LEEHTQWITDVRFSPSLSRL-ATSSADRTVRVWDTENPDYSLRTFTG-----------HSTTVMSLD 647 (837)
Q Consensus 585 ~t~~~--~~~---l~~h~~~I~~l~fspdg~~L-atgs~Dg~I~IWDl~~~~~~~~~~~~-----------h~~~V~sl~ 647 (837)
.+++. ... ...|.+.+.+..|+|||++| ++++.+++|+|||..+++. +..+.. +......+.
T Consensus 91 ~t~~~~~~~~i~~~~~~~~~~~s~~~SpDG~~l~vs~~~~~~v~i~d~~t~~~-~~~~~~~~~~~~~~~~~~~~~~~~v~ 169 (432)
T d1qksa2 91 WMKEPTTVAEIKIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEP-KKIQSTRGMTYDEQEYHPEPRVAAIL 169 (432)
T ss_dssp TSSSCCEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCE-EEEEECCEECTTTCCEESCCCEEEEE
T ss_pred eCCCceEEEEEecCCCCCCeEEecccCCCCCEEEEEcCCCCeEEEEeCccccc-eeeeccCCccccceeccCCCceeEEE
Confidence 87653 233 34566777778889999986 6788899999999998764 444333 345567889
Q ss_pred EcCCCCeEEEEEeCCCcEEEEECCCCeeee--EEecCCCeeEEEEecCCCEEEEEEcC-CeEEEEECCCCeEEEEEcC--
Q 003236 648 FHPSKEDLLCSCDNNSEIRYWSINNGSCAG--VFKCQSGATQMRFQPRLGRILAAAIE-NYISILDVETQVCRLKLQG-- 722 (837)
Q Consensus 648 fspdg~~llasgs~Dg~I~vwDl~t~~~i~--~~~~~~~i~sl~~sp~g~~llags~d-g~I~iwDl~s~~~~~~l~~-- 722 (837)
+++++..++++...++.|.+||..+.+... .+.....+..+.|+|+++++++++.+ +.|.++|..+++.+..+..
T Consensus 170 ~s~dg~~~~vs~~~~~~i~~~d~~~~~~~~~~~i~~g~~~~~~~~spdg~~~~va~~~~~~v~v~d~~~~~~~~~~~~g~ 249 (432)
T d1qksa2 170 ASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGG 249 (432)
T ss_dssp ECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSS
T ss_pred ECCCCCEEEEEEccCCeEEEEEccCCCcceEEEEcccCccccceECCCCCEEEEeccccceEEEeecccceEEEEeccCc
Confidence 999999888899999999999998877554 44555678899999999998888865 6899999999888776643
Q ss_pred ---CCCCEEEEEEcCCCCEEEEEe--CCeEEEEEcCCCCC----ceeEEEeecCCCce----------------------
Q 003236 723 ---HKNQVHSVCWNTSGEYLASVS--DELVRVWSIGSGSK----GECIHELSCTGNKF---------------------- 771 (837)
Q Consensus 723 ---h~~~V~sl~~spdg~~Lasgs--Dg~I~IwDl~s~~~----~~~i~~~~~~~~~I---------------------- 771 (837)
|........+...+...++.. ++.|.+|+...... ......+..+....
T Consensus 250 ~~~~~~~~~~~~~~~~g~~~~~~~lg~~~v~~~~~~~~~~~~~~~~v~~~~~~~~g~~~~~~s~p~~~~lw~~~~~~~~~ 329 (432)
T d1qksa2 250 QTPHPGRGANFVHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLNPEA 329 (432)
T ss_dssp SSBCCTTCEEEEETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCSEEEEECTTCSSH
T ss_pred cccccCcccceecCCCCceecccccCCceEEecccccccccccccEEEEEEEcCCCCeEEEEecCCccceeecccCCCCC
Confidence 334455556655666666665 77899998754321 11122222111111
Q ss_pred ---EEEEEeCCCCEEEEEEcCCeEEEEECCCCcEEEeccCCCCeeEEEEeCCCCEEEEEE-----CCCcEEEeC
Q 003236 772 ---HSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASAS-----HDKCVKIWK 837 (837)
Q Consensus 772 ---~sv~fspdg~~L~sgs~dg~I~IwDl~s~~~~~l~~h~~~V~sla~spdg~~LaSgs-----~DG~I~IWd 837 (837)
.++++ ||++.+++++.|+.+++||+.++. .+..|...|.+++|+|||++|+.+. .||.|+|||
T Consensus 330 ~~~~sv~v-pDg~~la~~s~d~~~k~w~~~~~~--~l~~~~~~v~~~~fS~DG~~v~~S~~~~~~~~g~i~i~D 400 (432)
T d1qksa2 330 EISGSVAV-FDIKAMTGDGSDPEFKTLPIAEWA--GITEGQPRVVQGEFNKDGTEVWFSVWNGKDQESALVVVD 400 (432)
T ss_dssp HHHTCEEE-EEGGGCCCSSSCCCEEEECHHHHH--TCCSSCCEEEEEEECTTSSEEEEEEECCTTSCCEEEEEE
T ss_pred CeeeEEEE-EechhhcccccCCceEeccccccc--ccCCCCCcEEEeEECCCCCEEEEEEecCCCCCCcEEEEE
Confidence 11222 455555555556666666653332 2235777899999999999886554 468899997
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.89 E-value=1.3e-21 Score=207.43 Aligned_cols=262 Identities=11% Similarity=0.072 Sum_probs=205.1
Q ss_pred CEEEEEECCCcEEEEeCCCCeEEEEecc--CCCCeEEEEEcCCCCEEE-EEeCCCeEEEEEcCCCCceeEEeeccc----
Q 003236 568 KLLATGGHDKKAVLWCTESFTVKSTLEE--HTQWITDVRFSPSLSRLA-TSSADRTVRVWDTENPDYSLRTFTGHS---- 640 (837)
Q Consensus 568 ~~Lasgs~Dg~I~VWd~~t~~~~~~l~~--h~~~I~~l~fspdg~~La-tgs~Dg~I~IWDl~~~~~~~~~~~~h~---- 640 (837)
+||++++.|++|.|||+.+++.+.++.. +...+.+++|+|||++|+ +++.++.|++||+.+++. +..+..+.
T Consensus 2 ~~~vt~~~d~~v~v~D~~s~~~~~~i~~~~~~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~~~-~~~~~~~~~~~~ 80 (337)
T d1pbyb_ 2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGET-LGRIDLSTPEER 80 (337)
T ss_dssp EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCE-EEEEECCBTTEE
T ss_pred eEEEEEcCCCEEEEEECCCCeEEEEEECCCCCCCccEEEECCCCCEEEEEECCCCeEEEEECCCCcE-EEEEecCCCccc
Confidence 5899999999999999999999988864 345688999999999875 567899999999998764 44444332
Q ss_pred -cceEEEEEcCCCCeEEEEEe-----------CCCcEEEEECCCCeeeeEEecCCCeeEEEEecCCCEEEEEEcCCeEEE
Q 003236 641 -TTVMSLDFHPSKEDLLCSCD-----------NNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISI 708 (837)
Q Consensus 641 -~~V~sl~fspdg~~llasgs-----------~Dg~I~vwDl~t~~~i~~~~~~~~i~sl~~sp~g~~llags~dg~I~i 708 (837)
..+..++|+|++..+++++. .+..+.+||..+++....+.....+..++|+++++++++++ +.+.+
T Consensus 81 ~~~~~~v~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~--~~~~~ 158 (337)
T d1pbyb_ 81 VKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPRQITMLAWARDGSKLYGLG--RDLHV 158 (337)
T ss_dssp EECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECCSSCCCEEECTTSSCEEEES--SSEEE
T ss_pred ccceeeEEEcCCCcEEEEeecCCcceeeeccccccceeeccccCCeEEEeccccCCceEEEEcCCCCEEEEEc--CCcce
Confidence 34568999999987765543 46789999999999999999888899999999999998875 45788
Q ss_pred EECCCCeEEEEEcCCCCCEEEEEEcCCCCE------------------------EEEEe-CCeEEEEEcCCCCCceeEEE
Q 003236 709 LDVETQVCRLKLQGHKNQVHSVCWNTSGEY------------------------LASVS-DELVRVWSIGSGSKGECIHE 763 (837)
Q Consensus 709 wDl~s~~~~~~l~~h~~~V~sl~~spdg~~------------------------Lasgs-Dg~I~IwDl~s~~~~~~i~~ 763 (837)
||..+++....+..+... ....+.+++.. +.... ++.+.+||+.++. .....
T Consensus 159 ~d~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~ 235 (337)
T d1pbyb_ 159 MDPEAGTLVEDKPIQSWE-AETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGE--MAMRE 235 (337)
T ss_dssp EETTTTEEEEEECSTTTT-TTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCC--EEEEE
T ss_pred eeeecCcEEEEeecCCcc-ccceecCCcceeeccccccceeeeeeeeeeeccceeeecccCccEEEEEcCCCc--EEEEE
Confidence 999999888877643321 11112222111 11111 3468899988773 23344
Q ss_pred eecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEEEeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 003236 764 LSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 837 (837)
Q Consensus 764 ~~~~~~~I~sv~fspdg~~L~sgs~dg~I~IwDl~s~~~~~l~~h~~~V~sla~spdg~~LaSgs~DG~I~IWd 837 (837)
+..+...+..+.+++++.++++. ++.|++||+.+++.+....+...+.+++|+|||++|++++.||.|+|||
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~--~~~i~v~d~~~~~~~~~~~~~~~~~~~~~s~dG~~l~v~~~~~~i~v~D 307 (337)
T d1pbyb_ 236 VRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVPLPHSYYSVNVSTDGSTVWLGGALGDLAAYD 307 (337)
T ss_dssp EEECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEECSSCCCEEEECTTSCEEEEESBSSEEEEEE
T ss_pred ecCCCcceEEEEecccceEEEEc--cccEEEEECCCCcEEEEEcCCCCEEEEEECCCCCEEEEEeCCCcEEEEE
Confidence 55677788899999999987665 5789999999999997777888899999999999999999999999997
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.89 E-value=7.9e-23 Score=219.46 Aligned_cols=272 Identities=11% Similarity=0.017 Sum_probs=211.5
Q ss_pred EEEEEcC-CCCEEEEEECCCcEEEEeCCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCC--eEEEEEcCCCCceeEE
Q 003236 559 ESCHFSP-DGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADR--TVRVWDTENPDYSLRT 635 (837)
Q Consensus 559 ~sl~fSp-dg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg--~I~IWDl~~~~~~~~~ 635 (837)
..-.||| ||+++|+++ +|.|+|||++++..+.. .|...|.+++|+|||++|++++.+. .|++||+.++. ...
T Consensus 6 ~~~~fSP~dG~~~a~~~-~g~v~v~d~~~~~~~~~--~~~~~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~~~--~~~ 80 (360)
T d1k32a3 6 FAEDFSPLDGDLIAFVS-RGQAFIQDVSGTYVLKV--PEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGK--AEK 80 (360)
T ss_dssp GEEEEEECGGGCEEEEE-TTEEEEECTTSSBEEEC--SCCSCEEEEEECSSSEEEEEEEETTEEEEEEEETTTCC--EEE
T ss_pred hcccccCCCCCEEEEEE-CCeEEEEECCCCcEEEc--cCCCCEEEEEECCCCCEEEEEEcCCCCEEEEEECCCCc--EEE
Confidence 3467999 999999987 47999999998877654 5899999999999999998877653 79999998765 567
Q ss_pred eeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeeEEec-CCCeeEEEEecCCCEEEEEEc----------CC
Q 003236 636 FTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAI----------EN 704 (837)
Q Consensus 636 ~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~-~~~i~sl~~sp~g~~llags~----------dg 704 (837)
+..|...|.+++|+|++. ++++++.++.+++|++.++++...+.. ...+.+++|+|++.+|+++.. ++
T Consensus 81 ~~~~~~~v~~~~~spdg~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~ 159 (360)
T d1k32a3 81 FEENLGNVFAMGVDRNGK-FAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQ 159 (360)
T ss_dssp CCCCCCSEEEEEECTTSS-EEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEE
T ss_pred eeCCCceEEeeeeccccc-ccceeccccccccccccccceeeeeecccccccchhhccceeeeeeeccccccceeecccc
Confidence 788999999999999987 555888899999999999998887775 456889999999999987653 24
Q ss_pred eEEEEECCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCC----ceeEEEeecCCCceEEEEEeCC
Q 003236 705 YISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSK----GECIHELSCTGNKFHSCVFHPT 779 (837)
Q Consensus 705 ~I~iwDl~s~~~~~~l~~h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~----~~~i~~~~~~~~~I~sv~fspd 779 (837)
.+++||+.+++.... ..|...+.+++|+|||++|++++ ++.+++||...... ......+..+...+..+.|+++
T Consensus 160 ~~~v~d~~~~~~~~~-~~~~~~~~~~~~spdg~~l~~~s~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 238 (360)
T d1k32a3 160 AIHVYDMEGRKIFAA-TTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPR 238 (360)
T ss_dssp EEEEEETTTTEEEEC-SCSSSBEEEEEECTTSCEEEEEESCCCCCEECSSSSCEECCSCBEEEEEESSTTCCCGGGCCCG
T ss_pred ceeeeccccCceeee-cccccccccccccCCCCEEEEEeCCCceEcccccccceeeccccceEEEecccCccccceECCC
Confidence 689999998876544 44778899999999999999988 89999999765421 1223334444555555677777
Q ss_pred CCEEEEEEcCC-----eEEEEECCCCcEEEeccCCCCeeEEEEeCCCC---EEEEEECCCcEEEeC
Q 003236 780 FPSLLVIGCYE-----TLELWNMTENKTLTLSAHDKLVSSLAASTVNG---MVASASHDKCVKIWK 837 (837)
Q Consensus 780 g~~L~sgs~dg-----~I~IwDl~s~~~~~l~~h~~~V~sla~spdg~---~LaSgs~DG~I~IWd 837 (837)
+..++++..+. .+..+++..+....+..+.+.+..+.+...+. ++++++.|+.|++||
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d 304 (360)
T d1k32a3 239 SMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYD 304 (360)
T ss_dssp GGSCCCCCCCCTTGGGGCEECSCCCBCEEEEEECSSEEEEEECCCCCSHHHHHHCCCCCEEEEEEE
T ss_pred cCcccccceeecccccceeecccCcCceeEeeecCCCceEEEEEecCCCeeEEEecCCCCEEEEEE
Confidence 76665554332 35556667777666667777777777665543 688888999999996
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Probab=99.88 E-value=1.1e-21 Score=208.79 Aligned_cols=269 Identities=10% Similarity=0.030 Sum_probs=202.4
Q ss_pred EEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEec-cCCCCeEEEEEcCCCCEEE-EEeCCCeEEEEEcCCCCceeEEeec
Q 003236 561 CHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLE-EHTQWITDVRFSPSLSRLA-TSSADRTVRVWDTENPDYSLRTFTG 638 (837)
Q Consensus 561 l~fSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~-~h~~~I~~l~fspdg~~La-tgs~Dg~I~IWDl~~~~~~~~~~~~ 638 (837)
++|++++++|++++.|++|.|||+++++.+.++. .|...+.+++|+|||++++ +++.++.|++||+.+++. +..+..
T Consensus 2 ~a~~~~~~~l~~~~~~~~v~v~D~~t~~~~~t~~~~~~~~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t~~~-~~~~~~ 80 (346)
T d1jmxb_ 2 PALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKN-TFHANL 80 (346)
T ss_dssp CCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEE-EEEEES
T ss_pred ccCCCCCcEEEEEcCCCEEEEEECCCCCEEEEEEcCCCCCcceEEECCCCCEEEEEECCCCcEEEEeCccCee-eeeecc
Confidence 4789999999999999999999999999999886 4566789999999999875 455789999999998764 333322
Q ss_pred c------ccceEEEEEcCCCCeEEEEEe-----------CCCcEEEEECCCCeeeeEEe---cCCCeeEEEEecCCCEEE
Q 003236 639 H------STTVMSLDFHPSKEDLLCSCD-----------NNSEIRYWSINNGSCAGVFK---CQSGATQMRFQPRLGRIL 698 (837)
Q Consensus 639 h------~~~V~sl~fspdg~~llasgs-----------~Dg~I~vwDl~t~~~i~~~~---~~~~i~sl~~sp~g~~ll 698 (837)
. ...+..++|+|||..++++.. .++.+.+||..+++....+. ....+..+.+++++..++
T Consensus 81 ~~~~~~~~~~~~~v~~s~DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (346)
T d1jmxb_ 81 SSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYV 160 (346)
T ss_dssp CCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECTTSCEEE
T ss_pred cccccccCCceEEEEEecCCCEEEEEecCCcceeeeeccCcceEEEEecccceeeeEEEeeeccCceEEEEecCCCEEEE
Confidence 1 234678999999987776542 47789999998876554332 344566677777665444
Q ss_pred EEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEcCCCCEE--------------------------EEEe-CCeEEEEE
Q 003236 699 AAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYL--------------------------ASVS-DELVRVWS 751 (837)
Q Consensus 699 ags~dg~I~iwDl~s~~~~~~l~~h~~~V~sl~~spdg~~L--------------------------asgs-Dg~I~IwD 751 (837)
+ ++.+.+||+.+++.+..+..+. .+..+.++|++..+ +++. +..+.+||
T Consensus 161 ~---~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (346)
T d1jmxb_ 161 A---GPDIYKMDVKTGKYTVALPLRN-WNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVD 236 (346)
T ss_dssp E---SSSEEEECTTTCCEEEEECSTT-CCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEE
T ss_pred e---CCcceEEEccCCCEEEEEecCC-CccceEEeccccEEEEEecCCCceEeeeeeeeeccCceeEeeccCCceEEEEE
Confidence 3 3678999999998888876442 23334444444322 2222 44677888
Q ss_pred cCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEEEeccCCCCeeEEEEeCCCCEEEEEECCC
Q 003236 752 IGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDK 831 (837)
Q Consensus 752 l~s~~~~~~i~~~~~~~~~I~sv~fspdg~~L~sgs~dg~I~IwDl~s~~~~~l~~h~~~V~sla~spdg~~LaSgs~DG 831 (837)
+.++. ........+...+..+.+++++.++++... +.|++||..+++.+....+...+.+++|+|||++|++++.||
T Consensus 237 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~v~d~~~~~~~~~~~~~~~~~~va~s~DG~~l~v~~~d~ 313 (346)
T d1jmxb_ 237 LKTGK--THTQEFADLTELYFTGLRSPKDPNQIYGVL-NRLAKYDLKQRKLIKAANLDHTYYCVAFDKKGDKLYLGGTFN 313 (346)
T ss_dssp TTTCC--EEEEEEEECSSCEEEEEECSSCTTEEEEEE-SEEEEEETTTTEEEEEEECSSCCCEEEECSSSSCEEEESBSS
T ss_pred CCCCc--eEEEEeecccceeEEEEEeCCCCEEEEecC-CeEEEEECCCCcEEEEEcCCCCEEEEEEcCCCCEEEEEeCCC
Confidence 87763 334445567788899999999988776654 579999999999886666777899999999999999999999
Q ss_pred cEEEeC
Q 003236 832 CVKIWK 837 (837)
Q Consensus 832 ~I~IWd 837 (837)
.|+|||
T Consensus 314 ~v~v~D 319 (346)
T d1jmxb_ 314 DLAVFN 319 (346)
T ss_dssp EEEEEE
T ss_pred cEEEEE
Confidence 999997
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.86 E-value=3.6e-20 Score=206.88 Aligned_cols=265 Identities=9% Similarity=-0.010 Sum_probs=198.3
Q ss_pred EEEEEECCCcEEEEeCCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCcee----EEeeccccceE
Q 003236 569 LLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSL----RTFTGHSTTVM 644 (837)
Q Consensus 569 ~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~~~~~~----~~~~~h~~~V~ 644 (837)
++++.+.||+|+|||+.+++.+.++..|. .+..++|+|||++|++++.|++|++||+.+++... ....+|...+.
T Consensus 34 ~~V~~~~dg~v~vwD~~t~~~~~~l~~g~-~~~~vafSPDGk~l~~~~~d~~v~vwd~~t~~~~~~~~i~~~~~~~~~~~ 112 (426)
T d1hzua2 34 FSVTLRDAGQIALVDGDSKKIVKVIDTGY-AVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVES 112 (426)
T ss_dssp EEEEETTTTEEEEEETTTCSEEEEEECCS-SEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECCSEEEEEEE
T ss_pred EEEEEcCCCEEEEEECCCCcEEEEEeCCC-CeeEEEECCCCCEEEEEeCCCCEEEEEccCCceeEEEEEeCCCCCcceEE
Confidence 56778889999999999999999998774 59999999999999999999999999999876422 23345677788
Q ss_pred EEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeeEEec------------CCCeeEEEEecCCCEEEEEEcC-CeEEEEEC
Q 003236 645 SLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC------------QSGATQMRFQPRLGRILAAAIE-NYISILDV 711 (837)
Q Consensus 645 sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~------------~~~i~sl~~sp~g~~llags~d-g~I~iwDl 711 (837)
+++|+|||.++++++..++.+++||..++.++..+.. ......+.+++++..++....+ +.+.+++.
T Consensus 113 s~~~spDG~~l~v~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d~~~~~~~~~~~~~i~~~~~ 192 (426)
T d1hzua2 113 SKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNY 192 (426)
T ss_dssp CCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEEC
T ss_pred eeeecCCCCEEEEeecCCCeEEEEcCCccceeEEeeccCCCccceeecCCCceeEEEECCCCCEEEEecCCCCeEEEEEe
Confidence 8899999998888888999999999999988776653 2234566777777777766654 56777776
Q ss_pred CCCeE-EEEEcCCCCCEEEEEEcCCCCEEEEEe--CCeEEEEEcCCCCCceeEEEeecC--CCceEEEEEeCCCC-EEEE
Q 003236 712 ETQVC-RLKLQGHKNQVHSVCWNTSGEYLASVS--DELVRVWSIGSGSKGECIHELSCT--GNKFHSCVFHPTFP-SLLV 785 (837)
Q Consensus 712 ~s~~~-~~~l~~h~~~V~sl~~spdg~~Lasgs--Dg~I~IwDl~s~~~~~~i~~~~~~--~~~I~sv~fspdg~-~L~s 785 (837)
..... ......+...+..+.|+|++++++++. +..+.+|+..++ ..+...... ........+...+. .+.+
T Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~a~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (426)
T d1hzua2 193 KDIDNLTVTSIGAAPFLADGGWDSSHRYFMTAANNSNKVAVIDSKDR---RLSALVDVGKTPHPGRGANFVHPKYGPVWS 269 (426)
T ss_dssp SSSSSCEEEEEECCSSEEEEEECTTSCEEEEEETTCSEEEEEETTTT---EEEEEEECSSCCCCSCCEEEEETTTEEEEE
T ss_pred ccccceeeEEeccCCccEeeeECCCCcEEEeeeecccceeeeecccc---cEEEEeccCCcccccceeeeecCCCCceEE
Confidence 65432 223345778899999999999998887 668999999887 444443322 22222333333322 2222
Q ss_pred --EEcCCeEEEEECCCC-------cEE-EeccCCCCeeEEEEeCCCCEEEE-------EECCCcEEEeC
Q 003236 786 --IGCYETLELWNMTEN-------KTL-TLSAHDKLVSSLAASTVNGMVAS-------ASHDKCVKIWK 837 (837)
Q Consensus 786 --gs~dg~I~IwDl~s~-------~~~-~l~~h~~~V~sla~spdg~~LaS-------gs~DG~I~IWd 837 (837)
...++.+.+|+.... +.. .+.+|...+..++|+||+++|++ ++.|++|+|||
T Consensus 270 ~~~~~d~~v~~~~~~~~~~~~~~~~~~~~l~g~~~~v~~v~~sPdg~~l~v~~~~~~s~~~~~tv~vwd 338 (426)
T d1hzua2 270 TSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFD 338 (426)
T ss_dssp EECTTTCEEEEEECCTTTCTTTBTSEEEEEECSSSCCCCEECCTTCSEEEECCTTCSSHHHHTCEEEEE
T ss_pred eccCCCceEEEeeccccccccccceEeEEEecCCCceeEEEcCCCCceEEEeecCCCCcccCCEEEEEE
Confidence 234668888876543 333 68899999999999999999994 55688999997
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.85 E-value=8e-20 Score=193.47 Aligned_cols=268 Identities=12% Similarity=0.097 Sum_probs=200.2
Q ss_pred CeEEcccCCCceEEeecCCCCCCCCccccccccCCCeeeeEEEEec--CCCCCeEEEEEcCCCCEE-EEEECCCcEEEEe
Q 003236 507 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIP--ASTSKVESCHFSPDGKLL-ATGGHDKKAVLWC 583 (837)
Q Consensus 507 ~~v~~Gs~D~~v~~w~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~--~H~~~V~sl~fSpdg~~L-asgs~Dg~I~VWd 583 (837)
.++++++.|++|.+|+.... +.+..+. .+...+.+++|+|||++| ++++.++.|.+||
T Consensus 2 ~~~vt~~~d~~v~v~D~~s~-------------------~~~~~i~~~~~~~~~~~i~~spDg~~l~v~~~~~~~v~v~D 62 (337)
T d1pbyb_ 2 DYILAPARPDKLVVIDTEKM-------------------AVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKID 62 (337)
T ss_dssp EEEEEEETTTEEEEEETTTT-------------------EEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEE
T ss_pred eEEEEEcCCCEEEEEECCCC-------------------eEEEEEECCCCCCCccEEEECCCCCEEEEEECCCCeEEEEE
Confidence 57888999999999966432 2233443 345668899999999987 4667899999999
Q ss_pred CCCCeEEEEeccCC-----CCeEEEEEcCCCCEEEEEeC------------CCeEEEEEcCCCCceeEEeeccccceEEE
Q 003236 584 TESFTVKSTLEEHT-----QWITDVRFSPSLSRLATSSA------------DRTVRVWDTENPDYSLRTFTGHSTTVMSL 646 (837)
Q Consensus 584 ~~t~~~~~~l~~h~-----~~I~~l~fspdg~~Latgs~------------Dg~I~IWDl~~~~~~~~~~~~h~~~V~sl 646 (837)
+.+++.+..+..+. ..+..++|+|+++++++++. +..+.+||..+... ...+. +...+.++
T Consensus 63 ~~t~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~-~~~~~-~~~~~~~~ 140 (337)
T d1pbyb_ 63 LVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSR-RKAFE-APRQITML 140 (337)
T ss_dssp TTTCCEEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEE-EEEEE-CCSSCCCE
T ss_pred CCCCcEEEEEecCCCcccccceeeEEEcCCCcEEEEeecCCcceeeeccccccceeeccccCCeE-EEecc-ccCCceEE
Confidence 99999998886554 34568999999999988764 57889999987653 44444 45668899
Q ss_pred EEcCCCCeEEEEEeCCCcEEEEECCCCeeeeEEecCCCeeEEEEecCCCE------------------------EEEEEc
Q 003236 647 DFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGR------------------------ILAAAI 702 (837)
Q Consensus 647 ~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~~~~i~sl~~sp~g~~------------------------llags~ 702 (837)
+|+|++..+++ ++ +.+.+||..+++....+..........+.+++.. +.....
T Consensus 141 ~~s~dg~~l~~-~~--~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (337)
T d1pbyb_ 141 AWARDGSKLYG-LG--RDLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAY 217 (337)
T ss_dssp EECTTSSCEEE-ES--SSEEEEETTTTEEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGE
T ss_pred EEcCCCCEEEE-Ec--CCcceeeeecCcEEEEeecCCccccceecCCcceeeccccccceeeeeeeeeeeccceeeeccc
Confidence 99999987664 43 4588999999998887765332222222222111 111122
Q ss_pred CCeEEEEECCCCeEEE-EEcCCCCCEEEEEEcCCCCEEEEEeCCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCC
Q 003236 703 ENYISILDVETQVCRL-KLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFP 781 (837)
Q Consensus 703 dg~I~iwDl~s~~~~~-~l~~h~~~V~sl~~spdg~~LasgsDg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fspdg~ 781 (837)
++.+.+||..++.... .+..+...+.++.+++++.+++++ ++.|++||+.++ ..+..+. +...+.+++|+|||+
T Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~v~d~~~~---~~~~~~~-~~~~~~~~~~s~dG~ 292 (337)
T d1pbyb_ 218 RTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGA-YNVLESFDLEKN---ASIKRVP-LPHSYYSVNVSTDGS 292 (337)
T ss_dssp EEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTSSEEEEE-ESEEEEEETTTT---EEEEEEE-CSSCCCEEEECTTSC
T ss_pred CccEEEEEcCCCcEEEEEecCCCcceEEEEecccceEEEEc-cccEEEEECCCC---cEEEEEc-CCCCEEEEEECCCCC
Confidence 3468999999886544 355577888999999999988755 688999999987 5666654 456788999999999
Q ss_pred EEEEEEcCCeEEEEECCCCcEE
Q 003236 782 SLLVIGCYETLELWNMTENKTL 803 (837)
Q Consensus 782 ~L~sgs~dg~I~IwDl~s~~~~ 803 (837)
+|++++.++.|++||..+++.+
T Consensus 293 ~l~v~~~~~~i~v~D~~t~~~v 314 (337)
T d1pbyb_ 293 TVWLGGALGDLAAYDAETLEKK 314 (337)
T ss_dssp EEEEESBSSEEEEEETTTCCEE
T ss_pred EEEEEeCCCcEEEEECCCCcEE
Confidence 9999999999999999999877
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Probab=99.85 E-value=3e-19 Score=200.48 Aligned_cols=232 Identities=9% Similarity=-0.016 Sum_probs=171.6
Q ss_pred cCCCCEEEEEECCCcEEEEeCCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCce----eEEeecc
Q 003236 564 SPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYS----LRTFTGH 639 (837)
Q Consensus 564 Spdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~~~~~----~~~~~~h 639 (837)
+++.-++++.+.||+|.|||..+++++..+..| ..+..++|+|||++|++++.|++|++||+.+.+.. +.....|
T Consensus 29 ~~~~~~~v~~~d~g~v~v~D~~t~~v~~~~~~g-~~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~~~~~ 107 (432)
T d1qksa2 29 DLENLFSVTLRDAGQIALIDGSTYEIKTVLDTG-YAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEA 107 (432)
T ss_dssp CGGGEEEEEETTTTEEEEEETTTCCEEEEEECS-SCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEE
T ss_pred CCCcEEEEEEcCCCEEEEEECCCCcEEEEEeCC-CCeeEEEECCCCCEEEEEcCCCCEEEEEeeCCCceEEEEEecCCCC
Confidence 334434688899999999999999999999877 46999999999999999999999999999876532 2233456
Q ss_pred ccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeeEEec------------CCCeeEEEEecCCCEEEEEEc-CCeE
Q 003236 640 STTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC------------QSGATQMRFQPRLGRILAAAI-ENYI 706 (837)
Q Consensus 640 ~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~------------~~~i~sl~~sp~g~~llags~-dg~I 706 (837)
.+.+.+..|+|||++++++++.++.|++||..+++++..+.. ......+.+++++..++++.. ++.|
T Consensus 108 ~~~~~s~~~SpDG~~l~vs~~~~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~vs~~~~~~i 187 (432)
T d1qksa2 108 RSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKI 187 (432)
T ss_dssp EEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEE
T ss_pred CCeEEecccCCCCCEEEEEcCCCCeEEEEeCccccceeeeccCCccccceeccCCCceeEEEECCCCCEEEEEEccCCeE
Confidence 677777888999999989999999999999999998877653 234567889999988766554 6899
Q ss_pred EEEECCCCeEEEEEc-CCCCCEEEEEEcCCCCEEEEEe--CCeEEEEEcCCCCCceeEEEeec-----CCCceEEEEEeC
Q 003236 707 SILDVETQVCRLKLQ-GHKNQVHSVCWNTSGEYLASVS--DELVRVWSIGSGSKGECIHELSC-----TGNKFHSCVFHP 778 (837)
Q Consensus 707 ~iwDl~s~~~~~~l~-~h~~~V~sl~~spdg~~Lasgs--Dg~I~IwDl~s~~~~~~i~~~~~-----~~~~I~sv~fsp 778 (837)
.+||..+.+...... .+...+.+++|+|+|+++++++ ++.|.++|..+. ..+..+.. +........+..
T Consensus 188 ~~~d~~~~~~~~~~~i~~g~~~~~~~~spdg~~~~va~~~~~~v~v~d~~~~---~~~~~~~~g~~~~~~~~~~~~~~~~ 264 (432)
T d1qksa2 188 LLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEG---KLVAIEDTGGQTPHPGRGANFVHPT 264 (432)
T ss_dssp EEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTT---EEEEEEECSSSSBCCTTCEEEEETT
T ss_pred EEEEccCCCcceEEEEcccCccccceECCCCCEEEEeccccceEEEeecccc---eEEEEeccCccccccCcccceecCC
Confidence 999998876443322 3566789999999999988887 668999999876 33333221 222233333333
Q ss_pred CCCEEEEEE-cCCeEEEEECCC
Q 003236 779 TFPSLLVIG-CYETLELWNMTE 799 (837)
Q Consensus 779 dg~~L~sgs-~dg~I~IwDl~s 799 (837)
.+....+.. .++.|.+|+...
T Consensus 265 ~g~~~~~~~lg~~~v~~~~~~~ 286 (432)
T d1qksa2 265 FGPVWATSHMGDDSVALIGTDP 286 (432)
T ss_dssp TEEEEEEEBSSSSEEEEEECCT
T ss_pred CCceecccccCCceEEeccccc
Confidence 333333222 255677776543
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Probab=99.84 E-value=2.1e-19 Score=190.91 Aligned_cols=274 Identities=9% Similarity=0.049 Sum_probs=202.9
Q ss_pred cccCCCeEEcccCCCceEEeecCCCCCCCCccccccccCCCeeeeEEEEec-CCCCCeEEEEEcCCCCEEE-EEECCCcE
Q 003236 502 LTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIP-ASTSKVESCHFSPDGKLLA-TGGHDKKA 579 (837)
Q Consensus 502 l~~~~~~v~~Gs~D~~v~~w~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~-~H~~~V~sl~fSpdg~~La-sgs~Dg~I 579 (837)
+...+.++++++.|+.|.+|+.... +.+.++. .|...+.+++|+|||++|+ +++.++.|
T Consensus 4 ~~~~~~~l~~~~~~~~v~v~D~~t~-------------------~~~~t~~~~~~~~p~~l~~spDG~~l~v~~~~~~~v 64 (346)
T d1jmxb_ 4 LKAGHEYMIVTNYPNNLHVVDVASD-------------------TVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDI 64 (346)
T ss_dssp CCTTCEEEEEEETTTEEEEEETTTT-------------------EEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEE
T ss_pred CCCCCcEEEEEcCCCEEEEEECCCC-------------------CEEEEEEcCCCCCcceEEECCCCCEEEEEECCCCcE
Confidence 4556789999999999999965432 2345554 4566688999999999875 55578999
Q ss_pred EEEeCCCCeEEEEeccCC------CCeEEEEEcCCCCEEEEEe------------CCCeEEEEEcCCCCceeEEee--cc
Q 003236 580 VLWCTESFTVKSTLEEHT------QWITDVRFSPSLSRLATSS------------ADRTVRVWDTENPDYSLRTFT--GH 639 (837)
Q Consensus 580 ~VWd~~t~~~~~~l~~h~------~~I~~l~fspdg~~Latgs------------~Dg~I~IWDl~~~~~~~~~~~--~h 639 (837)
++||+.+++.+..+.... ..+..++|+|||+++++++ .++.+.+||..++.. ...+. ..
T Consensus 65 ~~~d~~t~~~~~~~~~~~~~~~~~~~~~~v~~s~DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~~~~ 143 (346)
T d1jmxb_ 65 YGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLE-AKPVRTFPM 143 (346)
T ss_dssp EEEETTTTEEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGG-BCCSEEEEC
T ss_pred EEEeCccCeeeeeecccccccccCCceEEEEEecCCCEEEEEecCCcceeeeeccCcceEEEEeccccee-eeEEEeeec
Confidence 999999999987765322 3466899999999998775 467889999887553 22221 12
Q ss_pred ccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeeEEecCCCeeEEEEecCCCE-----------------------
Q 003236 640 STTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGR----------------------- 696 (837)
Q Consensus 640 ~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~~~~i~sl~~sp~g~~----------------------- 696 (837)
...+..+.+++++. ++++ +..+.+|++.+++.+..+........+.++|++..
T Consensus 144 ~~~~~~~~~~~~~~-~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (346)
T d1jmxb_ 144 PRQVYLMRAADDGS-LYVA---GPDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDD 219 (346)
T ss_dssp CSSCCCEEECTTSC-EEEE---SSSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC---
T ss_pred cCceEEEEecCCCE-EEEe---CCcceEEEccCCCEEEEEecCCCccceEEeccccEEEEEecCCCceEeeeeeeeeccC
Confidence 34456666776654 4433 35689999999998888776554444444444332
Q ss_pred ---EEEEEcCCeEEEEECCCCeEEE-EEcCCCCCEEEEEEcCCCCEEEEEeCCeEEEEEcCCCCCceeEEEeecCCCceE
Q 003236 697 ---ILAAAIENYISILDVETQVCRL-KLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCTGNKFH 772 (837)
Q Consensus 697 ---llags~dg~I~iwDl~s~~~~~-~l~~h~~~V~sl~~spdg~~LasgsDg~I~IwDl~s~~~~~~i~~~~~~~~~I~ 772 (837)
++++..+..+.+||+.++.... .+..|...+.++.+++++.+++...++.|++||+.++ +.+..+. +...+.
T Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~d~~~~---~~~~~~~-~~~~~~ 295 (346)
T d1jmxb_ 220 KQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGVLNRLAKYDLKQR---KLIKAAN-LDHTYY 295 (346)
T ss_dssp ----CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEEESEEEEEETTTT---EEEEEEE-CSSCCC
T ss_pred ceeEeeccCCceEEEEECCCCceEEEEeecccceeEEEEEeCCCCEEEEecCCeEEEEECCCC---cEEEEEc-CCCCEE
Confidence 2223345568889998876544 4556888899999999999988888889999999887 5666554 456789
Q ss_pred EEEEeCCCCEEEEEEcCCeEEEEECCCCcEE
Q 003236 773 SCVFHPTFPSLLVIGCYETLELWNMTENKTL 803 (837)
Q Consensus 773 sv~fspdg~~L~sgs~dg~I~IwDl~s~~~~ 803 (837)
+++|+|||++|++++.|+.|++||+.+++.+
T Consensus 296 ~va~s~DG~~l~v~~~d~~v~v~D~~t~~~i 326 (346)
T d1jmxb_ 296 CVAFDKKGDKLYLGGTFNDLAVFNPDTLEKV 326 (346)
T ss_dssp EEEECSSSSCEEEESBSSEEEEEETTTTEEE
T ss_pred EEEEcCCCCEEEEEeCCCcEEEEECccCCEE
Confidence 9999999999999999999999999999988
|
| >d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]
Probab=99.83 E-value=6.9e-18 Score=182.78 Aligned_cols=279 Identities=11% Similarity=0.029 Sum_probs=204.3
Q ss_pred cCCCCCeEEEEEcCCCCEEEEEE-----CCCcEEEEeCCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeC---------
Q 003236 552 PASTSKVESCHFSPDGKLLATGG-----HDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA--------- 617 (837)
Q Consensus 552 ~~H~~~V~sl~fSpdg~~Lasgs-----~Dg~I~VWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~--------- 617 (837)
..|.+++.+++++|||+.+++.. .++.|.+||..+++.+.++..+... .++|+|||++|++++.
T Consensus 17 ~~~~~p~~~~a~spdg~~~~~~~~~~~~~~~~v~v~D~~tg~~~~~~~~~~~~--~~a~SpDG~~l~va~~~~~~~~~~~ 94 (373)
T d2madh_ 17 GAADGPTNDEAPGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGK 94 (373)
T ss_pred ccCCCCccccccCCCCCEEEEEcccccCCCceEEEEECCCCCEEEEEeCCCCc--cEEEcCCCCEEEEEeecCCcccccc
Confidence 46888899999999999887652 3467999999999999988766543 7999999999998753
Q ss_pred -CCeEEEEEcCCCCceeEEeeccccce-------EEEEEcCCCCeEEEEE-eCCCcEEEEECCCCeeeeEEecCCCeeEE
Q 003236 618 -DRTVRVWDTENPDYSLRTFTGHSTTV-------MSLDFHPSKEDLLCSC-DNNSEIRYWSINNGSCAGVFKCQSGATQM 688 (837)
Q Consensus 618 -Dg~I~IWDl~~~~~~~~~~~~h~~~V-------~sl~fspdg~~llasg-s~Dg~I~vwDl~t~~~i~~~~~~~~i~sl 688 (837)
++.|.+||+.+++. +..+..+.... ..+.|+++++.+++.. ..++.+.+|+....+..... ....++
T Consensus 95 ~~~~v~v~D~~t~~~-~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~ 170 (373)
T d2madh_ 95 RTDYVEVFDPVTFLP-IADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVVQGGSSDDQLL---SSPTCY 170 (373)
T ss_pred cceEEEEEECCCCcE-EEEEecCCcceeEeccCCCcEEEEeCCCcEEEEEEcCCCceEEeeccCCeEEEEe---ccceeE
Confidence 57899999998764 44444444332 4577888887665443 44678889998877665444 345688
Q ss_pred EEecCCCEE-EEEEcCCeEEEEECCCCeEEEEEcCC------CCCEEEEEEcCCCCEEEEEeCCeEEEEEcCCCCCceeE
Q 003236 689 RFQPRLGRI-LAAAIENYISILDVETQVCRLKLQGH------KNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECI 761 (837)
Q Consensus 689 ~~sp~g~~l-lags~dg~I~iwDl~s~~~~~~l~~h------~~~V~sl~~spdg~~LasgsDg~I~IwDl~s~~~~~~i 761 (837)
.+++++..+ ++.+.|+.+.+||...+........+ ......+.+++++.+++.+.++.+++|+...... ..+
T Consensus 171 ~~s~~g~~~~v~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~ 249 (373)
T d2madh_ 171 HIHPGAPSTFYLLCAQGGLAKTDHAGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGA-TNK 249 (373)
T ss_pred EEecCCCcEEEEEcCCCeEEEEEcCCceeeEEEeeeccccCccceeeeEEECCCceEEEecCCceEEEEEcCCCeE-EEE
Confidence 899998765 56778999999999988776655432 2234456677777777766689999999887532 111
Q ss_pred EEeecC----------CCceEEEEEeCCCCEEE----------EEEcCCeEEEEECCCCcEEEeccCCCCeeEEEEeCCC
Q 003236 762 HELSCT----------GNKFHSCVFHPTFPSLL----------VIGCYETLELWNMTENKTLTLSAHDKLVSSLAASTVN 821 (837)
Q Consensus 762 ~~~~~~----------~~~I~sv~fspdg~~L~----------sgs~dg~I~IwDl~s~~~~~l~~h~~~V~sla~spdg 821 (837)
...... ......+++++++..++ +...++.|.+||..+++.+....+...+.+++|+|||
T Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~d~~t~~~~~~~~~~~~~~~~a~spDG 329 (373)
T d2madh_ 250 APIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISLGHDVDAISVAQDG 329 (373)
T ss_pred EeeccccCcEEeeeeccCcceeeEEecCCCeEEEecCCCceEEeecCCCeEEEEECCCCcEEEEecCCCCeeEEEECCCC
Confidence 111111 12334456666665544 3455668999999999998777788899999999999
Q ss_pred C--EEEEEECCCcEEEeC
Q 003236 822 G--MVASASHDKCVKIWK 837 (837)
Q Consensus 822 ~--~LaSgs~DG~I~IWd 837 (837)
+ ++++++.|+.|+|||
T Consensus 330 ~~~l~vt~~~d~~v~v~D 347 (373)
T d2madh_ 330 GPDLYALSAGTEVLHIYD 347 (373)
T ss_pred CEEEEEEeCCCCeEEEEE
Confidence 8 456888999999997
|
| >d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Putative isomerase YbhE family: Putative isomerase YbhE domain: Putative isomerase YbhE species: Escherichia coli [TaxId: 562]
Probab=99.82 E-value=8.6e-18 Score=178.04 Aligned_cols=268 Identities=10% Similarity=0.187 Sum_probs=192.9
Q ss_pred EEEEEECCCcEEEEeCCCCeE---EEEeccCCCCeEEEEEcCCCCEEEEEeC-CCeEEEEEcCCCCceeE--Eeeccccc
Q 003236 569 LLATGGHDKKAVLWCTESFTV---KSTLEEHTQWITDVRFSPSLSRLATSSA-DRTVRVWDTENPDYSLR--TFTGHSTT 642 (837)
Q Consensus 569 ~Lasgs~Dg~I~VWd~~t~~~---~~~l~~h~~~I~~l~fspdg~~Latgs~-Dg~I~IWDl~~~~~~~~--~~~~h~~~ 642 (837)
.+++++.|++|+||++.+... +..+ .|.+.|.+|+|+|||++|++++. |+.|++|++........ ....+...
T Consensus 6 v~v~~~~~~~I~v~~~~~~~~l~~~~~~-~~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~~~~~~~ 84 (333)
T d1ri6a_ 6 VYIASPESQQIHVWNLNHEGALTLTQVV-DVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGS 84 (333)
T ss_dssp EEEEEGGGTEEEEEEECTTSCEEEEEEE-ECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSSC
T ss_pred EEEECCCCCcEEEEEEcCCCCeEEEEEE-cCCCCEeEEEEeCCCCEEEEEECCCCeEEEEEEeCCCCcEEEeeecccCCC
Confidence 456777999999999875432 3333 57889999999999999966654 89999999986554222 22334566
Q ss_pred eEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeeEEe---cCCCeeEEEEecCCCEEEEEEcC-CeEEEEECCCCeEEE
Q 003236 643 VMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK---CQSGATQMRFQPRLGRILAAAIE-NYISILDVETQVCRL 718 (837)
Q Consensus 643 V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~---~~~~i~sl~~sp~g~~llags~d-g~I~iwDl~s~~~~~ 718 (837)
+..++|+|+|+.+++++..++.|.+|+........... ....+.++.++|+++++++++.+ ..|.+|+........
T Consensus 85 p~~l~~spDg~~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~ 164 (333)
T d1ri6a_ 85 LTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLV 164 (333)
T ss_dssp CSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEE
T ss_pred ceEEEEcCCCCEEeecccCCCceeeeccccccceecccccCCCccceEEEeeecceeeeccccccceeeEEEeccCCcce
Confidence 78899999999888777678899999988766554443 34568889999999998888864 679999987642211
Q ss_pred ------EEcCCCCCEEEEEEcCCCCEEEEEe--CCeEEEEEcCCCCCc-eeEEEee------cCCCceEEEEEeCCCCEE
Q 003236 719 ------KLQGHKNQVHSVCWNTSGEYLASVS--DELVRVWSIGSGSKG-ECIHELS------CTGNKFHSCVFHPTFPSL 783 (837)
Q Consensus 719 ------~l~~h~~~V~sl~~spdg~~Lasgs--Dg~I~IwDl~s~~~~-~~i~~~~------~~~~~I~sv~fspdg~~L 783 (837)
...........++|++++.+++... .+...+|++...... ....... ........++++++++++
T Consensus 165 ~~~~~~~~~~~g~~p~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~~ 244 (333)
T d1ri6a_ 165 AQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHL 244 (333)
T ss_dssp EEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEE
T ss_pred eeeceeeeeecCCCccEEEEeccceeEEeeccccCceEEEeecccccceeeeeeeeeeecCCCccccceeEEEecccCce
Confidence 1223455678999999999888776 668888887654321 1212221 123456778999999988
Q ss_pred EEEEc-CCeEEEEECCCCcEE----EeccCCCCeeEEEEeCCCCEEEEEE-CCCcEEEeC
Q 003236 784 LVIGC-YETLELWNMTENKTL----TLSAHDKLVSSLAASTVNGMVASAS-HDKCVKIWK 837 (837)
Q Consensus 784 ~sgs~-dg~I~IwDl~s~~~~----~l~~h~~~V~sla~spdg~~LaSgs-~DG~I~IWd 837 (837)
++... ++.+.+|++...... ....+...+.+++|+|||++|++++ .++.|+||+
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~a~spDGk~l~va~~~~~~v~v~~ 304 (333)
T d1ri6a_ 245 YACDRTASLITVFSVSEDGSVLSKEGFQPTETQPRGFNVDHSGKYLIAAGQKSHHISVYE 304 (333)
T ss_dssp EEEETTTTEEEEEEECTTSCCEEEEEEEECSSSCCCEEECTTSSEEEEECTTTCEEEEEE
T ss_pred eeecccCCeEEEEEEcCCCCEEEEEEEeCCCCCeeEEEEeCCCCEEEEEECCCCeEEEEE
Confidence 77765 568999987654322 3334556788999999999887765 468899984
|
| >d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Putative isomerase YbhE family: Putative isomerase YbhE domain: Putative isomerase YbhE species: Escherichia coli [TaxId: 562]
Probab=99.81 E-value=1.4e-17 Score=176.49 Aligned_cols=279 Identities=11% Similarity=0.107 Sum_probs=198.4
Q ss_pred eEEcccCCCceEEeecCCCCCCCCccccccccCCCeeeeEEEEecCCCCCeEEEEEcCCCCEEEEEE-CCCcEEEEeCCC
Q 003236 508 FVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGG-HDKKAVLWCTES 586 (837)
Q Consensus 508 ~v~~Gs~D~~v~~w~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~H~~~V~sl~fSpdg~~Lasgs-~Dg~I~VWd~~t 586 (837)
++++++.|+.|++|...... .+..+..+ .|.+.|.+|+|+|||++|++++ .|+.|++|++..
T Consensus 6 v~v~~~~~~~I~v~~~~~~~----------------~l~~~~~~-~~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~ 68 (333)
T d1ri6a_ 6 VYIASPESQQIHVWNLNHEG----------------ALTLTQVV-DVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAP 68 (333)
T ss_dssp EEEEEGGGTEEEEEEECTTS----------------CEEEEEEE-ECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECT
T ss_pred EEEECCCCCcEEEEEEcCCC----------------CeEEEEEE-cCCCCEeEEEEeCCCCEEEEEECCCCeEEEEEEeC
Confidence 44677888999999654321 12223333 5778899999999999986655 489999999875
Q ss_pred CeEEEEe---ccCCCCeEEEEEcCCCCEEEEEeC-CCeEEEEEcCCCCce-eEEeeccccceEEEEEcCCCCeEEEEEeC
Q 003236 587 FTVKSTL---EEHTQWITDVRFSPSLSRLATSSA-DRTVRVWDTENPDYS-LRTFTGHSTTVMSLDFHPSKEDLLCSCDN 661 (837)
Q Consensus 587 ~~~~~~l---~~h~~~I~~l~fspdg~~Latgs~-Dg~I~IWDl~~~~~~-~~~~~~h~~~V~sl~fspdg~~llasgs~ 661 (837)
......+ ..+...+..++|+|||++|++++. ++.|.+|+....... ......+...+.++.++|++..+++....
T Consensus 69 ~~~~~~~~~~~~~~~~p~~l~~spDg~~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~d~~~~~~~~~~ 148 (333)
T d1ri6a_ 69 DDGALTFAAESALPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALK 148 (333)
T ss_dssp TTCCEEEEEEEECSSCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGG
T ss_pred CCCcEEEeeecccCCCceEEEEcCCCCEEeecccCCCceeeeccccccceecccccCCCccceEEEeeecceeeeccccc
Confidence 4322222 234556788999999999999885 678999998765432 23344566778999999999988877777
Q ss_pred CCcEEEEECCCCeeeeEEe-------cCCCeeEEEEecCCCEEEEEEc-CCeEEEEECCCC----eEEEEEc------CC
Q 003236 662 NSEIRYWSINNGSCAGVFK-------CQSGATQMRFQPRLGRILAAAI-ENYISILDVETQ----VCRLKLQ------GH 723 (837)
Q Consensus 662 Dg~I~vwDl~t~~~i~~~~-------~~~~i~sl~~sp~g~~llags~-dg~I~iwDl~s~----~~~~~l~------~h 723 (837)
+..|.+|+........... .......++|++++..++.... .+...+++.... .....+. ..
T Consensus 149 ~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~p~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (333)
T d1ri6a_ 149 QDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSD 228 (333)
T ss_dssp GTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCS
T ss_pred cceeeEEEeccCCcceeeeceeeeeecCCCccEEEEeccceeEEeeccccCceEEEeecccccceeeeeeeeeeecCCCc
Confidence 8889999987654332211 2345678999999998877765 467778876532 2222221 12
Q ss_pred CCCEEEEEEcCCCCEEEEEe--CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcC-CeEEEE--ECC
Q 003236 724 KNQVHSVCWNTSGEYLASVS--DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCY-ETLELW--NMT 798 (837)
Q Consensus 724 ~~~V~sl~~spdg~~Lasgs--Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fspdg~~L~sgs~d-g~I~Iw--Dl~ 798 (837)
......+++++++++++... ++.+.+|++........+.........+..++|+|||++|++++.+ +.|.+| |..
T Consensus 229 ~~~~~~~~~s~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~a~spDGk~l~va~~~~~~v~v~~id~~ 308 (333)
T d1ri6a_ 229 TRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQPRGFNVDHSGKYLIAAGQKSHHISVYEIVGE 308 (333)
T ss_dssp CCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSSSCCCEEECTTSSEEEEECTTTCEEEEEEEETT
T ss_pred cccceeEEEecccCceeeecccCCeEEEEEEcCCCCEEEEEEEeCCCCCeeEEEEeCCCCEEEEEECCCCeEEEEEEECC
Confidence 34577889999999888776 7799999998765444444445556677889999999998888764 689998 556
Q ss_pred CCcEE
Q 003236 799 ENKTL 803 (837)
Q Consensus 799 s~~~~ 803 (837)
++++.
T Consensus 309 tG~l~ 313 (333)
T d1ri6a_ 309 QGLLH 313 (333)
T ss_dssp TTEEE
T ss_pred CCcEE
Confidence 67654
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.77 E-value=4.8e-17 Score=174.31 Aligned_cols=271 Identities=11% Similarity=0.045 Sum_probs=186.4
Q ss_pred eEEEEEcCCCCEEEEEE-----CCCcEEEEeCCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEe----------CCCeEE
Q 003236 558 VESCHFSPDGKLLATGG-----HDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSS----------ADRTVR 622 (837)
Q Consensus 558 V~sl~fSpdg~~Lasgs-----~Dg~I~VWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs----------~Dg~I~ 622 (837)
+.-.+.+|||+.+++.. .+..|.+||..+++.+.++..+.. ..++|+|||++|++++ .|+.|+
T Consensus 4 ~~~~a~spdg~~~~v~~~~~~~~~~~v~v~D~~tg~~~~~~~~g~~--~~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v~ 81 (355)
T d2bbkh_ 4 RILEAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFL--PNPVVADDGSFIAHASTVFSRIARGERTDYVE 81 (355)
T ss_dssp CBCCCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSS--CEEEECTTSSCEEEEEEEEEETTEEEEEEEEE
T ss_pred cEeEeeCCCCCEEEEEecccCCCcCeEEEEECCCCcEEEEEECCCC--CceEEcCCCCEEEEEeCCCccccccCCCCEEE
Confidence 33446689999987764 356799999999999998876544 4799999999888754 478999
Q ss_pred EEEcCCCCceeEEeeccc-------cceEEEEEcCCCCeEEEEE-eCCCcEEEEECCCCeeeeEEecCCCe--------e
Q 003236 623 VWDTENPDYSLRTFTGHS-------TTVMSLDFHPSKEDLLCSC-DNNSEIRYWSINNGSCAGVFKCQSGA--------T 686 (837)
Q Consensus 623 IWDl~~~~~~~~~~~~h~-------~~V~sl~fspdg~~llasg-s~Dg~I~vwDl~t~~~i~~~~~~~~i--------~ 686 (837)
+||+.+++. +..+..+. .....++|++++..+++.. +.+..+.+|+..+++.+..+...... .
T Consensus 82 v~D~~t~~~-~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (355)
T d2bbkh_ 82 VFDPVTLLP-TADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDT 160 (355)
T ss_dssp EECTTTCCE-EEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEEEETTE
T ss_pred EEECCCCCE-EEEEecCCcceeecCCCCceEEEecCCCeeEEecCCCCceeeeeecCCCcEeeEEecCCcceEeecCCcc
Confidence 999998764 33333222 2345689999998776543 45678999999999988877654322 2
Q ss_pred EEEEecCCCEEEEEEc-CCeEEEEECCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEe
Q 003236 687 QMRFQPRLGRILAAAI-ENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHEL 764 (837)
Q Consensus 687 sl~~sp~g~~llags~-dg~I~iwDl~s~~~~~~l~~h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~ 764 (837)
.+.+++++..+++... ++.+.+++..... ..+...+....+.+++..++.++ ++.+++|++..+.. ..+...
T Consensus 161 ~~~~~~dg~~~~v~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~~~ 234 (355)
T d2bbkh_ 161 FFMHCRDGSLAKVAFGTEGTPEITHTEVFH-----PEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDA-KFLPAV 234 (355)
T ss_dssp EEEEETTSCEEEEECCSSSCCEEEECCCCS-----CTTSCBCSCCEEETTTTEEEEEBTTSEEEEEECTTSSC-EECCCE
T ss_pred eEEEcCCCCEEEEEecCCCeEEEEeccccc-----ceecceeeeccccCCCCeEEEecCCCeEEEEecCCCcE-EEEecc
Confidence 3344444444333322 2233333332221 12344455667888888888877 89999999987642 222221
Q ss_pred ecC----------CCceEEEEEeCCCCEEEEEEcC----------CeEEEEECCCCcEEEeccCCCCeeEEEEeCCCC--
Q 003236 765 SCT----------GNKFHSCVFHPTFPSLLVIGCY----------ETLELWNMTENKTLTLSAHDKLVSSLAASTVNG-- 822 (837)
Q Consensus 765 ~~~----------~~~I~sv~fspdg~~L~sgs~d----------g~I~IwDl~s~~~~~l~~h~~~V~sla~spdg~-- 822 (837)
..+ ......+++++++..+++...+ ..|.+||..+++.+....+...+.+++|+|||+
T Consensus 235 ~~~~~~~~~~~~~p~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~v~d~~t~~~~~~~~~~~~~~~~a~spDG~~~ 314 (355)
T d2bbkh_ 235 EALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMGHEIDSINVSQDEKPL 314 (355)
T ss_dssp ESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEEEECEEEECCSSSCE
T ss_pred CCcccceEeeeeeccceEEEEEeCCCCeEEEEeccCCceeecCCCCeEEEEeCCCCcEEEEecCCCCEEEEEEcCCCCeE
Confidence 111 1223457899999988877654 369999999999885555666789999999997
Q ss_pred EEEEEECCCcEEEeC
Q 003236 823 MVASASHDKCVKIWK 837 (837)
Q Consensus 823 ~LaSgs~DG~I~IWd 837 (837)
++++++.|+.|+|||
T Consensus 315 l~v~~~~d~~i~v~D 329 (355)
T d2bbkh_ 315 LYALSTGDKTLYIHD 329 (355)
T ss_dssp EEEEETTTTEEEEEE
T ss_pred EEEEECCCCEEEEEE
Confidence 456677899999997
|
| >d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]
Probab=99.73 E-value=5.1e-15 Score=159.77 Aligned_cols=261 Identities=9% Similarity=0.001 Sum_probs=185.5
Q ss_pred EEEecCCCCCeEEEEEcCCCCEEEEEE----------CCCcEEEEeCCCCeEEEEeccCCCCe-------EEEEEcCCCC
Q 003236 548 FQLIPASTSKVESCHFSPDGKLLATGG----------HDKKAVLWCTESFTVKSTLEEHTQWI-------TDVRFSPSLS 610 (837)
Q Consensus 548 ~~~l~~H~~~V~sl~fSpdg~~Lasgs----------~Dg~I~VWd~~t~~~~~~l~~h~~~I-------~~l~fspdg~ 610 (837)
+..+..+..+ .++|+|||++|++++ .++.|.|||+.+++.+..+..+.... ..+.|+++++
T Consensus 60 ~~~~~~~~~~--~~a~SpDG~~l~va~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~ 137 (373)
T d2madh_ 60 LGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNA 137 (373)
T ss_pred EEEEeCCCCc--cEEEcCCCCEEEEEeecCCcccccccceEEEEEECCCCcEEEEEecCCcceeEeccCCCcEEEEeCCC
Confidence 3445555543 699999999999875 35789999999999998887665544 4467888888
Q ss_pred EEEEEeC--CCeEEEEEcCCCCceeEEeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeeEEecCC-----
Q 003236 611 RLATSSA--DRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQS----- 683 (837)
Q Consensus 611 ~Latgs~--Dg~I~IWDl~~~~~~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~~~----- 683 (837)
.+++... ++.+.+|+....+. ..+...+.++.|+|++..++++.+.|+.+.+||...++.........
T Consensus 138 ~~~v~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~s~~g~~~~v~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (373)
T d2madh_ 138 DLLFFQFAAGPAVGLVVQGGSSD-----DQLLSSPTCYHIHPGAPSTFYLLCAQGGLAKTDHAGGAAGAGLVGAMLTAAQ 212 (373)
T ss_pred cEEEEEEcCCCceEEeeccCCeE-----EEEeccceeEEEecCCCcEEEEEcCCCeEEEEEcCCceeeEEEeeeccccCc
Confidence 7666543 56788888876442 23334567899999999999899999999999999888776654311
Q ss_pred C--eeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEE--EEcCCC----------CCEEEEEEcCCCCEEEE--------
Q 003236 684 G--ATQMRFQPRLGRILAAAIENYISILDVETQVCRL--KLQGHK----------NQVHSVCWNTSGEYLAS-------- 741 (837)
Q Consensus 684 ~--i~sl~~sp~g~~llags~dg~I~iwDl~s~~~~~--~l~~h~----------~~V~sl~~spdg~~Las-------- 741 (837)
. ...+.+.++ ..++..+.++.+.+|+........ .+..+. .....+++++++..++.
T Consensus 213 ~~~~~~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~ 291 (373)
T d2madh_ 213 NLLTQPAQANKS-GRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAW 291 (373)
T ss_pred cceeeeEEECCC-ceEEEecCCceEEEEEcCCCeEEEEEeeccccCcEEeeeeccCcceeeEEecCCCeEEEecCCCceE
Confidence 1 223344443 456667778899999988764332 222221 22344566666665443
Q ss_pred --Ee-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEE--EEEEcCCeEEEEECCCCcEE-EeccCCCCeeEE
Q 003236 742 --VS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSL--LVIGCYETLELWNMTENKTL-TLSAHDKLVSSL 815 (837)
Q Consensus 742 --gs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fspdg~~L--~sgs~dg~I~IwDl~s~~~~-~l~~h~~~V~sl 815 (837)
.. ++.|.+||+.++ +.+..+. +...+..++|+|||+.+ ++++.|+.|++||+.+++.+ .+..+....+.|
T Consensus 292 ~~~~~~~~v~~~d~~t~---~~~~~~~-~~~~~~~~a~spDG~~~l~vt~~~d~~v~v~D~~tg~~~~~~~~~g~~P~~l 367 (373)
T d2madh_ 292 KLHAAAKEVTSVTGLVG---QTSSQIS-LGHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQSTVELGSGPQVL 367 (373)
T ss_pred EeecCCCeEEEEECCCC---cEEEEec-CCCCeeEEEECCCCCEEEEEEeCCCCeEEEEECCCCCEEEEECCCCCCCcEE
Confidence 23 568999999887 4555544 56778999999999853 56778889999999999998 555688888888
Q ss_pred EEeCC
Q 003236 816 AASTV 820 (837)
Q Consensus 816 a~spd 820 (837)
++.++
T Consensus 368 ~~~~~ 372 (373)
T d2madh_ 368 SVMNE 372 (373)
T ss_pred EEecC
Confidence 87654
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.67 E-value=4.4e-15 Score=158.70 Aligned_cols=262 Identities=10% Similarity=0.082 Sum_probs=176.9
Q ss_pred EEEecCCCCCeEEEEEcCCCCEEEEE----------ECCCcEEEEeCCCCeEEEEeccCCC-------CeEEEEEcCCCC
Q 003236 548 FQLIPASTSKVESCHFSPDGKLLATG----------GHDKKAVLWCTESFTVKSTLEEHTQ-------WITDVRFSPSLS 610 (837)
Q Consensus 548 ~~~l~~H~~~V~sl~fSpdg~~Lasg----------s~Dg~I~VWd~~t~~~~~~l~~h~~-------~I~~l~fspdg~ 610 (837)
+..+..+.. ..++|||||++|+++ +.|+.|++||+.+++.+..+..+.. ....++|+++++
T Consensus 41 ~~~~~~g~~--~~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~ 118 (355)
T d2bbkh_ 41 IGMIDGGFL--PNPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGK 118 (355)
T ss_dssp EEEEEECSS--CEEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSS
T ss_pred EEEEECCCC--CceEEcCCCCEEEEEeCCCccccccCCCCEEEEEECCCCCEEEEEecCCcceeecCCCCceEEEecCCC
Confidence 334444443 379999999988764 3478999999999998877754332 345689999999
Q ss_pred EEEEEe--CCCeEEEEEcCCCCceeEEeeccc-------cceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeeEEec
Q 003236 611 RLATSS--ADRTVRVWDTENPDYSLRTFTGHS-------TTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC 681 (837)
Q Consensus 611 ~Latgs--~Dg~I~IWDl~~~~~~~~~~~~h~-------~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~ 681 (837)
++++++ .+..+.+|+..+++. +..+..+. .....+.+++++..+++....++.+.+++....... .
T Consensus 119 ~~~v~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~dg~~~~v~~~~~~~~~~~~~~~~~~~----~ 193 (355)
T d2bbkh_ 119 TLLFYQFSPAPAVGVVDLEGKAF-KRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPE----D 193 (355)
T ss_dssp EEEEEECSSSCEEEEEETTTTEE-EEEEECCSEEEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCT----T
T ss_pred eeEEecCCCCceeeeeecCCCcE-eeEEecCCcceEeecCCcceEEEcCCCCEEEEEecCCCeEEEEecccccce----e
Confidence 888775 467899999988653 44443322 122345556666555555555555555555443221 1
Q ss_pred CCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEE--EEcCCC----------CCEEEEEEcCCCCEEEEEe-C----
Q 003236 682 QSGATQMRFQPRLGRILAAAIENYISILDVETQVCRL--KLQGHK----------NQVHSVCWNTSGEYLASVS-D---- 744 (837)
Q Consensus 682 ~~~i~sl~~sp~g~~llags~dg~I~iwDl~s~~~~~--~l~~h~----------~~V~sl~~spdg~~Lasgs-D---- 744 (837)
...+....+.+++..++.++.++.+++|++..+.... ....+. .....+++++++..++... +
T Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~d~~~~~~~~~~~~~~ 273 (355)
T d2bbkh_ 194 EFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEW 273 (355)
T ss_dssp SCBCSCCEEETTTTEEEEEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTT
T ss_pred cceeeeccccCCCCeEEEecCCCeEEEEecCCCcEEEEeccCCcccceEeeeeeccceEEEEEeCCCCeEEEEeccCCce
Confidence 1234556788888999999999999999998875322 222121 2234588999999887764 2
Q ss_pred ------CeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCE--EEEEEcCCeEEEEECCCCcEE-EeccCCCCeeEE
Q 003236 745 ------ELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPS--LLVIGCYETLELWNMTENKTL-TLSAHDKLVSSL 815 (837)
Q Consensus 745 ------g~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fspdg~~--L~sgs~dg~I~IwDl~s~~~~-~l~~h~~~V~sl 815 (837)
..|.+||..++ +.+..+.. ...+.+++|+|||+. +++++.++.|++||+.+++.+ .+..+......+
T Consensus 274 ~~~~~~~~v~v~d~~t~---~~~~~~~~-~~~~~~~a~spDG~~~l~v~~~~d~~i~v~D~~tg~~~~~i~~~G~~p~~i 349 (355)
T d2bbkh_ 274 RHKTASRFVVVLDAKTG---ERLAKFEM-GHEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVNQLGHGPQVI 349 (355)
T ss_dssp CTTSCEEEEEEEETTTC---CEEEEEEE-EEEECEEEECCSSSCEEEEEETTTTEEEEEETTTCCEEEEECCCCSSCCEE
T ss_pred eecCCCCeEEEEeCCCC---cEEEEecC-CCCEEEEEEcCCCCeEEEEEECCCCEEEEEECCCCCEEEEEeCcCCCccEE
Confidence 36999999987 45555443 455789999999974 344556889999999999988 555666666666
Q ss_pred EEeCC
Q 003236 816 AASTV 820 (837)
Q Consensus 816 a~spd 820 (837)
.+..+
T Consensus 350 ~~~d~ 354 (355)
T d2bbkh_ 350 TTADM 354 (355)
T ss_dssp ECCCC
T ss_pred EeCCC
Confidence 65543
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.57 E-value=2.5e-14 Score=155.23 Aligned_cols=278 Identities=10% Similarity=-0.033 Sum_probs=189.0
Q ss_pred CCCCCeEEEEEcCCCCEEEE---EECCC--cEEEEeCCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEe----------C
Q 003236 553 ASTSKVESCHFSPDGKLLAT---GGHDK--KAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSS----------A 617 (837)
Q Consensus 553 ~H~~~V~sl~fSpdg~~Las---gs~Dg--~I~VWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs----------~ 617 (837)
.+.+....++..++++.... ...++ .|.+||..+++.+..+..+... .++|+|||++|++++ .
T Consensus 17 ~~~g~~~~~a~~~~~~~~~v~~~~~~~g~~~~~~~d~~~~~~~~~~~~~~~~--~~a~spDg~~i~~~~~~~~~~~~g~~ 94 (368)
T d1mdah_ 17 ASDGSSCDHGPGAISRRSHITLPAYFAGTTENWVSCAGCGVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKR 94 (368)
T ss_dssp CCCCCCBCCCCCCCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSE
T ss_pred ccCCCccccccCCCCcceeEEeeccCCCcceEEEEeCCCCcEEEEEeCCCCC--cceECCCCCEEEEEcccCcccccccc
Confidence 34455566667888885322 23344 4777799999999888766654 589999999998865 3
Q ss_pred CCeEEEEEcCCCCceeEEeeccc-------cceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeeEEecCCCeeEEEE
Q 003236 618 DRTVRVWDTENPDYSLRTFTGHS-------TTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRF 690 (837)
Q Consensus 618 Dg~I~IWDl~~~~~~~~~~~~h~-------~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~~~~i~sl~~ 690 (837)
|+.|.+||..+.+. +..+..+. .....++|+|||++++++...++.|.+||+.+++.+..+........ +
T Consensus 95 d~~v~v~D~~t~~~-~~~i~~p~~~~~~~g~~p~~~a~SpDGk~l~va~~~~~~v~~~d~~~~~~~~~~~~~~~~~~--~ 171 (368)
T d1mdah_ 95 TDYVEVFDPVTFLP-IADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASDDQLTKSASCFHI--H 171 (368)
T ss_dssp EEEEEEECTTTCCE-EEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEEEEEEECSSCCCC--E
T ss_pred CCeEEEEECCCCcE-eeeecCCccceecccCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcEeEEeeccCcceE--c
Confidence 77899999998764 44333222 22346899999998887777789999999999999988876443321 1
Q ss_pred ecCCCEEEEEEcCCeEEEEECCCCeEEEEE------cCCCCCEEEEEEcCCCCEEEEEeCCeEEEEEcCCCCCceeEEEe
Q 003236 691 QPRLGRILAAAIENYISILDVETQVCRLKL------QGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHEL 764 (837)
Q Consensus 691 sp~g~~llags~dg~I~iwDl~s~~~~~~l------~~h~~~V~sl~~spdg~~LasgsDg~I~IwDl~s~~~~~~i~~~ 764 (837)
......+++.+.||.+.++++......... ..+...+..+.+.+++..+.. ..+.++++++..... ..+...
T Consensus 172 ~~~~~~~v~~~~Dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~v~~~~~~~~~~-~~~~~~ 249 (368)
T d1mdah_ 172 PGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGMLVWA-VASSILQGDIPAAGA-TMKAAI 249 (368)
T ss_dssp EEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCEEETTTTEEEEC-BSSCCEEEECCSSCC-EEECCC
T ss_pred cCCCceEEEEcCCCCEEEEEecCCceeeeeeecccccccccceeecccccCcEEEEe-cCCCEEEEeecCCce-EEEeec
Confidence 122355667777888888887655332221 223445556777777765543 355677777665422 111111
Q ss_pred ecC----------CCceEEEEEeCCCCEEEEEEcCC---------eEEEEECCCCcEEEeccCCCCeeEEEEeCCCC--E
Q 003236 765 SCT----------GNKFHSCVFHPTFPSLLVIGCYE---------TLELWNMTENKTLTLSAHDKLVSSLAASTVNG--M 823 (837)
Q Consensus 765 ~~~----------~~~I~sv~fspdg~~L~sgs~dg---------~I~IwDl~s~~~~~l~~h~~~V~sla~spdg~--~ 823 (837)
... ......+++++++..+++...++ .|.+||..+++.+....+...+.+++|+|||+ +
T Consensus 250 ~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~v~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~a~spDG~~~l 329 (368)
T d1mdah_ 250 DGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGHDSDAIIAAQDGASDN 329 (368)
T ss_dssp CSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEEEEECEEEECCSSSCEE
T ss_pred ccccceeeeeeecCCCceeEEEcCCCCEEEEEecCCCceeecCCceEEEEECCCCcEeEEecCCCceeEEEECCCCCEEE
Confidence 110 11224578999998887765432 59999999999886666667899999999997 3
Q ss_pred EEEEECCCcEEEeC
Q 003236 824 VASASHDKCVKIWK 837 (837)
Q Consensus 824 LaSgs~DG~I~IWd 837 (837)
++++..|+.|+|||
T Consensus 330 y~s~~~~~~v~v~D 343 (368)
T d1mdah_ 330 YANSAGTEVLDIYD 343 (368)
T ss_dssp EEEETTTTEEEEEE
T ss_pred EEEeCCCCeEEEEE
Confidence 45667789999997
|
| >d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Pseudomonas nautica [TaxId: 2743]
Probab=99.56 E-value=4.1e-14 Score=156.56 Aligned_cols=258 Identities=11% Similarity=0.024 Sum_probs=186.1
Q ss_pred EEEEECCCcEEEEeCCCCeEEEEecc------------------------------CCCCeEEEEEcCCCCEEEEEe-CC
Q 003236 570 LATGGHDKKAVLWCTESFTVKSTLEE------------------------------HTQWITDVRFSPSLSRLATSS-AD 618 (837)
Q Consensus 570 Lasgs~Dg~I~VWd~~t~~~~~~l~~------------------------------h~~~I~~l~fspdg~~Latgs-~D 618 (837)
+++|+.+|.|+||++.+++.+.++.. |.-.+.+..++|||++|++.. .+
T Consensus 14 f~Sgg~sG~V~V~dlpS~r~l~~IpVfspd~~~g~g~~~es~~vl~~~~~~~~gd~hhP~~s~t~gtpDGr~lfV~d~~~ 93 (441)
T d1qnia2 14 FWSGGHQGEVRVLGVPSMRELMRIPVFNVDSATGWGITNESKEILGGDQQYLNGDCHHPHISMTDGRYDGKYLFINDKAN 93 (441)
T ss_dssp EEECBTTCCEEEEEETTTEEEEEECSSSBCTTTCTTTSHHHHHHHCSSSCCSCCCBCCCEEEEETTEEEEEEEEEEETTT
T ss_pred EEeCCCCCcEEEEeCCCCcEEEEEEeEcCCCCEEEEECCccceEEecccccccCcccCCCcceecccCCCCEEEEEcCCC
Confidence 66778899999999999998887632 223345555678999987665 67
Q ss_pred CeEEEEEcCCCCceeEEeeccccceEEEEEcCCCCeEEEEEeCCCc------------------EEEEECCCCeeeeEEe
Q 003236 619 RTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSE------------------IRYWSINNGSCAGVFK 680 (837)
Q Consensus 619 g~I~IWDl~~~~~~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~------------------I~vwDl~t~~~i~~~~ 680 (837)
.+|.++|+.+.+........+...+..++|+|+++..++++..+.. +..+|..+.+....+.
T Consensus 94 ~rVavIDl~t~k~~~ii~iP~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~~~~~~~~~~~~~iD~~t~~v~~qI~ 173 (441)
T d1qnia2 94 TRVARIRLDIMKTDKITHIPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSLDNSYTMFTAIDAETMDVAWQVI 173 (441)
T ss_dssp TEEEEEETTTTEEEEEEECTTCCCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCGGGEEEEEEEEETTTCSEEEEEE
T ss_pred CEEEEEECCCCcEeeEEecCCCCCccceEEeccCCEEEEEeccCCcccccCcccccccccccceEEeecCccceeeEEEe
Confidence 8999999998764333334466789999999998865555543333 3558999999888888
Q ss_pred cCCCeeEEEEecCCCEEEEEEcCC-----------------------------------------eEEEEECCCCeEEEE
Q 003236 681 CQSGATQMRFQPRLGRILAAAIEN-----------------------------------------YISILDVETQVCRLK 719 (837)
Q Consensus 681 ~~~~i~sl~~sp~g~~llags~dg-----------------------------------------~I~iwDl~s~~~~~~ 719 (837)
.......+.++|+|+++++++.+. .+.+++......+..
T Consensus 174 v~~~p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~~d~i~v~n~p~~~~~~~dGk~~~v~~~~v~vvd~~~~~~v~~~ 253 (441)
T d1qnia2 174 VDGNLDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVVVFNVERIAAAVKAGNFKTIGDSKVPVVDGRGESEFTRY 253 (441)
T ss_dssp ESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSBCEEEEEEHHHHHHHHHTTCCBCCTTCCCCEEECSSSCSSEEE
T ss_pred cCCCccceEECCCCCEEEEEecCCCceEEEeccCcceEEEEEeCCccceEEEecCCCEEEeCCCCcEEEEcccCCceEEE
Confidence 888899999999999999887542 233333444445555
Q ss_pred EcCCCCCEEEEEEcCCCCEEEEEe--CCeEEEEEcCCCC--------CceeEEEeecCCCceEEEEEeCCCCEEEEEEcC
Q 003236 720 LQGHKNQVHSVCWNTSGEYLASVS--DELVRVWSIGSGS--------KGECIHELSCTGNKFHSCVFHPTFPSLLVIGCY 789 (837)
Q Consensus 720 l~~h~~~V~sl~~spdg~~Lasgs--Dg~I~IwDl~s~~--------~~~~i~~~~~~~~~I~sv~fspdg~~L~sgs~d 789 (837)
+.... ....+.++|||+++++++ +++|.|||+.+.. ...++......+-......|+++|..+.+...|
T Consensus 254 IPvgk-sPhGv~vSPDGkyl~~~~~~~~tvsv~d~~k~~~~~~~~~~~~~~~~~~~~~glgplh~~fd~~g~~yts~~~d 332 (441)
T d1qnia2 254 IPVPK-NPHGLNTSPDGKYFIANGKLSPTVSVIAIDKLDDLFEDKIELRDTIVAEPELGLGPLHTTFDGRGNAYTTLFID 332 (441)
T ss_dssp ECCBS-SCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHTTTSSCGGGGEEECCBCCSCEEEEEECSSSEEEEEETTT
T ss_pred EeCCC-CccCceECCCCCEEEEeCCcCCcEEEEEeehhhhHhhccCCcceEEEeecccccCcccceecCCceEEEccccc
Confidence 55443 357899999999988776 8999999986521 112333323333445667899999877777789
Q ss_pred CeEEEEECCC----------CcEE-Ee-----ccCCCCeeEEEEeCCCCEEEEEE
Q 003236 790 ETLELWNMTE----------NKTL-TL-----SAHDKLVSSLAASTVNGMVASAS 828 (837)
Q Consensus 790 g~I~IwDl~s----------~~~~-~l-----~~h~~~V~sla~spdg~~LaSgs 828 (837)
..|..|++.. ...+ .+ .+|...+.+.+++|||++|++++
T Consensus 333 s~v~kw~~~~~~~~~~~~~~~~v~~~~~v~y~~GH~~~~~~~t~~pdGk~l~s~~ 387 (441)
T d1qnia2 333 SQVCKWNIADAIKHYNGDRVNYIRQKLDVQYQPGHNHASLTESRDADGKWLVVLS 387 (441)
T ss_dssp TEEEEEEHHHHHHHHTTCCCCCEEEEEECSSCEEEEEETTTTSTTCCCCEEEEEE
T ss_pred ceEEEeccchhhhhhccCCCceeEeccccccCCCCCccccccccCCCCcEEEecC
Confidence 9999999741 1222 33 47777778888999999999994
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.50 E-value=5.5e-13 Score=144.43 Aligned_cols=257 Identities=11% Similarity=0.015 Sum_probs=166.6
Q ss_pred EEEecCCCCCeEEEEEcCCCCEEEEEE----------CCCcEEEEeCCCCeEEEEeccCCC-------CeEEEEEcCCCC
Q 003236 548 FQLIPASTSKVESCHFSPDGKLLATGG----------HDKKAVLWCTESFTVKSTLEEHTQ-------WITDVRFSPSLS 610 (837)
Q Consensus 548 ~~~l~~H~~~V~sl~fSpdg~~Lasgs----------~Dg~I~VWd~~t~~~~~~l~~h~~-------~I~~l~fspdg~ 610 (837)
+..+..+... .++|+|||++|++++ .|+.|.+||..+++.+..+..+.. ....++|+|||+
T Consensus 59 ~~~~~~~~~~--~~a~spDg~~i~~~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~i~~p~~~~~~~g~~p~~~a~SpDGk 136 (368)
T d1mdah_ 59 LGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSA 136 (368)
T ss_dssp EEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSS
T ss_pred EEEEeCCCCC--cceECCCCCEEEEEcccCccccccccCCeEEEEECCCCcEeeeecCCccceecccCCccceEECCCCC
Confidence 3444555544 589999999988765 367899999999999887754432 234689999999
Q ss_pred EEEEEe-CCCeEEEEEcCCCCceeEEeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeeEEec-------C
Q 003236 611 RLATSS-ADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-------Q 682 (837)
Q Consensus 611 ~Latgs-~Dg~I~IWDl~~~~~~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~-------~ 682 (837)
+|+++. .++.|.+||+.+.+. ...+..+.... +.+.+...++..+.||.+.+|++........... .
T Consensus 137 ~l~va~~~~~~v~~~d~~~~~~-~~~~~~~~~~~----~~~~~~~~~v~~~~Dg~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (368)
T d1mdah_ 137 CLLFFLFGSSAAAGLSVPGASD-DQLTKSASCFH----IHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQN 211 (368)
T ss_dssp CEEEEECSSSCEEEEEETTTEE-EEEEECSSCCC----CEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSC
T ss_pred EEEEEeCCCCeEEEEECCCCcE-eEEeeccCcce----EccCCCceEEEEcCCCCEEEEEecCCceeeeeeecccccccc
Confidence 998886 479999999998664 44444433321 2233445666777788888888876543332221 1
Q ss_pred CCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEc--CCC----------CCEEEEEEcCCCCEEEEEe--C----
Q 003236 683 SGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQ--GHK----------NQVHSVCWNTSGEYLASVS--D---- 744 (837)
Q Consensus 683 ~~i~sl~~sp~g~~llags~dg~I~iwDl~s~~~~~~l~--~h~----------~~V~sl~~spdg~~Lasgs--D---- 744 (837)
..+..+.+.+++..++ ...+.++++++.......... .+. .....+++++++..+++.. +
T Consensus 212 ~~~~~~~~~~~g~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~v~~~~~~~~~ 289 (368)
T d1mdah_ 212 CSSQAAQANYPGMLVW--AVASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSC 289 (368)
T ss_dssp BCSCCEEETTTTEEEE--CBSSCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCT
T ss_pred cceeecccccCcEEEE--ecCCCEEEEeecCCceEEEeecccccceeeeeeecCCCceeEEEcCCCCEEEEEecCCCcee
Confidence 2234555666544333 334566677766554332211 111 1223578899988776654 2
Q ss_pred ----CeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCE-EE-EEEcCCeEEEEECCCCcEEEeccCCCCeeEEEE
Q 003236 745 ----ELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPS-LL-VIGCYETLELWNMTENKTLTLSAHDKLVSSLAA 817 (837)
Q Consensus 745 ----g~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fspdg~~-L~-sgs~dg~I~IwDl~s~~~~~l~~h~~~V~sla~ 817 (837)
..|.+||..++ +.+..+.. ...+..++|+|||+. ++ ++..++.|++||..+++.+....-....+.|++
T Consensus 290 ~~~~~~v~v~D~~t~---~~~~~~~~-~~~~~~~a~spDG~~~ly~s~~~~~~v~v~D~~tgk~~~~i~~g~~P~~l~~ 364 (368)
T d1mdah_ 290 LAAAENTSSVTASVG---QTSGPISN-GHDSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSSVELDKGPESLSV 364 (368)
T ss_dssp TSCEEEEEEEESSSC---CEEECCEE-EEEECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEEEECCCCSCCCEEEC
T ss_pred ecCCceEEEEECCCC---cEeEEecC-CCceeEEEECCCCCEEEEEEeCCCCeEEEEECCCCCEEEEEECCCCCCEEEE
Confidence 25999999988 45555443 456888999999974 44 444578999999999998854443444555554
|
| >d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl peptidase IV/CD26, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=99.48 E-value=2e-12 Score=144.78 Aligned_cols=270 Identities=13% Similarity=0.027 Sum_probs=159.1
Q ss_pred EecCCCCCeEEEEEcCCCCEEEEEEC---------CCcEEEEeCCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCe
Q 003236 550 LIPASTSKVESCHFSPDGKLLATGGH---------DKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRT 620 (837)
Q Consensus 550 ~l~~H~~~V~sl~fSpdg~~Lasgs~---------Dg~I~VWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~ 620 (837)
.+..|...|.++.|||||++|++++. ++.+.|||+.+++. ..+..|.+.+..+.|+|||++||.. .++.
T Consensus 56 ~~~~~~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~l~d~~~~~~-~~l~~~~~~~~~~~~SPDG~~ia~~-~~~~ 133 (470)
T d2bgra1 56 TFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQL-ITEERIPNNTQWVTWSPVGHKLAYV-WNND 133 (470)
T ss_dssp TTTTSSSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEE-CCSSCCCTTEEEEEECSSTTCEEEE-ETTE
T ss_pred hhhhccCccceeEECCCCCEEEEEECCcceeeeccCceEEEEECCCCcc-cccccCCccccccccccCcceeeEe-eccc
Confidence 34567788999999999999998753 46789999998874 4677899999999999999999996 5678
Q ss_pred EEEEEcCCCCceeEEeec-----------------cccceEEEEEcCCCCeEEEEEeCCCcEEEEEC-------------
Q 003236 621 VRVWDTENPDYSLRTFTG-----------------HSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSI------------- 670 (837)
Q Consensus 621 I~IWDl~~~~~~~~~~~~-----------------h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl------------- 670 (837)
+++|+..++........+ ..+....+.|+|||..+++....+..|..|++
T Consensus 134 l~~~~~~~g~~~~~t~~~~~~~~~~g~~d~~~~~~~~~~~~~~~wSPDGk~ia~~~~d~~~v~~~~~~~~~~~~~~~~~~ 213 (470)
T d2bgra1 134 IYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKT 213 (470)
T ss_dssp EEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEE
T ss_pred ceEEECCCCceeeeeeccCCCcccccccceeeeeeecCCccccEECCCCCccceeEecCCcCceEEEEeeccCCCCCCee
Confidence 999999877643222111 12334568899999977765544443433332
Q ss_pred ----------------------CCCeeeeEEec------------CCCeeEEEEecCCCEEEEEEc-CC-----eEEEEE
Q 003236 671 ----------------------NNGSCAGVFKC------------QSGATQMRFQPRLGRILAAAI-EN-----YISILD 710 (837)
Q Consensus 671 ----------------------~t~~~i~~~~~------------~~~i~sl~~sp~g~~llags~-dg-----~I~iwD 710 (837)
..+........ ...+..+.|.+++..++.... .+ .+..+|
T Consensus 214 ~~~~~~~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~r~~~~~~~~~~~~d 293 (470)
T d2bgra1 214 VRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYD 293 (470)
T ss_dssp EEEECCBTTSCCCEEEEEEEEGGGCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEE
T ss_pred eeeccccccccCCcceEEEEECCCcceeeeccccccCCccccCCCCceEEEEEEcCCCceeEEEeeccCCceEEEEEEec
Confidence 21111100000 011345777777665554332 21 244455
Q ss_pred CCCCeEEEEEc------CCCCC-----EEEEEEcCCC--CEEEEEe-CCe--EEEEEcCCCCCceeEEEeecCCCceEEE
Q 003236 711 VETQVCRLKLQ------GHKNQ-----VHSVCWNTSG--EYLASVS-DEL--VRVWSIGSGSKGECIHELSCTGNKFHSC 774 (837)
Q Consensus 711 l~s~~~~~~l~------~h~~~-----V~sl~~spdg--~~Lasgs-Dg~--I~IwDl~s~~~~~~i~~~~~~~~~I~sv 774 (837)
..++....... ..... .....|.+++ .+++... ||. |++|+...+ ....+......|..+
T Consensus 294 ~~tg~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~s~~dg~~~ly~~~~~g~----~~~~lt~g~~~v~~~ 369 (470)
T d2bgra1 294 ESSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKK----DCTFITKGTWEVIGI 369 (470)
T ss_dssp TTTTEEEECGGGCEEEECSSSCSSSSSCCCCEECTTSSEEEEEEECTTSCEEEEEEETTCS----CCEESCCSSSCEEEE
T ss_pred CCCCcEEEEEEEeeeeeeccceeecccCCCceeeecCCCcEEEEeccCcCceeEEEeccCC----ceeeeccCCeeEEEE
Confidence 66655433211 01111 1122344443 3344444 775 455555443 233344445556665
Q ss_pred EEeCCCCEEEEE-EcCC------eEEEEECCCCcEE-E----eccCCCCeeEEEEeCCCCEEEE
Q 003236 775 VFHPTFPSLLVI-GCYE------TLELWNMTENKTL-T----LSAHDKLVSSLAASTVNGMVAS 826 (837)
Q Consensus 775 ~fspdg~~L~sg-s~dg------~I~IwDl~s~~~~-~----l~~h~~~V~sla~spdg~~LaS 826 (837)
++++++.|+.. +.++ .|+-.++..+... . +..|...+..++|||||++++.
T Consensus 370 -~~~d~~~iyf~a~~~~~~p~~~~ly~v~~~g~~~~~~lt~~~~~~~~~~~s~~fSpdgky~~~ 432 (470)
T d2bgra1 370 -EALTSDYLYYISNEYKGMPGGRNLYKIQLSDYTKVTCLSCELNPERCQYYSVSFSKEAKYYQL 432 (470)
T ss_dssp -EEECSSEEEEEESCGGGCTTCBEEEEEETTCTTCEEESSTTTSTTTBCBEEEEECTTSSEEEE
T ss_pred -EEECCCEEEEEEecCCCCcceEEEEEEECCCCCceeEecccccCCCCCEEEEEECCCCCEEEE
Confidence 44455555443 3222 2555566654433 2 3367888999999999998773
|
| >d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl peptidase IV/CD26, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=99.33 E-value=2.8e-11 Score=135.25 Aligned_cols=138 Identities=16% Similarity=0.115 Sum_probs=109.8
Q ss_pred EEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEec-----cCCCCeEEEEEcCCCCEEEEEeC---------CCeEEEEE
Q 003236 560 SCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLE-----EHTQWITDVRFSPSLSRLATSSA---------DRTVRVWD 625 (837)
Q Consensus 560 sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~-----~h~~~I~~l~fspdg~~Latgs~---------Dg~I~IWD 625 (837)
.+.|.+|+.++.. .|+.|.+||+.+++....+. .|...|.++.|+||+++|++++. ++.+.|||
T Consensus 21 ~~~W~~d~~~~~~--~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~l~d 98 (470)
T d2bgra1 21 SLRWISDHEYLYK--QENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYD 98 (470)
T ss_dssp CCEECSSSEEEEE--SSSCEEEEETTTCCEEEEECTTTTTTSSSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEE
T ss_pred CCEeCCCCEEEEE--cCCcEEEEECCCCCEEEEEchhhhhhccCccceeEECCCCCEEEEEECCcceeeeccCceEEEEE
Confidence 5789999987764 57889999999998876554 45578999999999999998854 56889999
Q ss_pred cCCCCceeEEeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeeEEec-------------------CCCee
Q 003236 626 TENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-------------------QSGAT 686 (837)
Q Consensus 626 l~~~~~~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~-------------------~~~i~ 686 (837)
+.++. +..+..|...+..+.|+|||..++.+ .++.+++|+..+++....... .+...
T Consensus 99 ~~~~~--~~~l~~~~~~~~~~~~SPDG~~ia~~--~~~~l~~~~~~~g~~~~~t~~~~~~~~~~g~~d~~~~~~~~~~~~ 174 (470)
T d2bgra1 99 LNKRQ--LITEERIPNNTQWVTWSPVGHKLAYV--WNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYS 174 (470)
T ss_dssp TTTTE--ECCSSCCCTTEEEEEECSSTTCEEEE--ETTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSB
T ss_pred CCCCc--ccccccCCccccccccccCcceeeEe--ecccceEEECCCCceeeeeeccCCCcccccccceeeeeeecCCcc
Confidence 99865 56678888999999999999977754 377899999998876654321 12245
Q ss_pred EEEEecCCCEEEEEEcC
Q 003236 687 QMRFQPRLGRILAAAIE 703 (837)
Q Consensus 687 sl~~sp~g~~llags~d 703 (837)
.+.|+|||++|+....|
T Consensus 175 ~~~wSPDGk~ia~~~~d 191 (470)
T d2bgra1 175 ALWWSPNGTFLAYAQFN 191 (470)
T ss_dssp CEEECTTSSEEEEEEEE
T ss_pred ccEECCCCCccceeEec
Confidence 67899999999988764
|
| >d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: TolB, C-terminal domain family: TolB, C-terminal domain domain: TolB, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=99.32 E-value=1.3e-09 Score=111.39 Aligned_cols=233 Identities=13% Similarity=0.135 Sum_probs=160.8
Q ss_pred cEEEEeCCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCC---eEEEEEcCCCCceeEEeeccccceEEEEEcCCCCe
Q 003236 578 KAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADR---TVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKED 654 (837)
Q Consensus 578 ~I~VWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg---~I~IWDl~~~~~~~~~~~~h~~~V~sl~fspdg~~ 654 (837)
.|+|.|.+..... .+..+...+...+|+|||+.||...... .+.+.+..... ...+..+...+.+..|+|++..
T Consensus 20 ~l~i~d~dG~~~~-~l~~~~~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~spdg~~ 96 (269)
T d2hqsa1 20 ELRVSDYDGYNQF-VVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGA--VRQVASFPRHNGAPAFSPDGSK 96 (269)
T ss_dssp EEEEEETTSCSCE-EEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCC--EEEEECCSSCEEEEEECTTSSE
T ss_pred EEEEEcCCCCCcE-EEecCCCceeeeEECCCCCEEEEEEeeccCcceeeeecccCc--eeEEeeeecccccceecCCCCe
Confidence 5777787644444 3344667789999999999999776543 46666666544 4566667788899999999998
Q ss_pred EEEEEeCCCcEEEE--ECCCCeeeeEEecCCCeeEEEEecCCCEEEEEEc-CC--eEEEEECCCCeEEEEEcCCCCCEEE
Q 003236 655 LLCSCDNNSEIRYW--SINNGSCAGVFKCQSGATQMRFQPRLGRILAAAI-EN--YISILDVETQVCRLKLQGHKNQVHS 729 (837)
Q Consensus 655 llasgs~Dg~I~vw--Dl~t~~~i~~~~~~~~i~sl~~sp~g~~llags~-dg--~I~iwDl~s~~~~~~l~~h~~~V~s 729 (837)
++.....++...++ .....................+++++..++.... ++ .|.++++..+... .+..+......
T Consensus 97 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~~~~~~-~~~~~~~~~~~ 175 (269)
T d2hqsa1 97 LAFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQ-RITWEGSQNQD 175 (269)
T ss_dssp EEEEECTTSSCEEEEEETTTCCEEECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCE-ECCCSSSEEEE
T ss_pred eeEeeecCCccceeecccccccceeeeeccccccccccccccccceecccccCCceEeeeecccccce-eeecccccccc
Confidence 88777655544333 3333444444444455566677888777766654 33 5677777766433 33345667788
Q ss_pred EEEcCCCCEEEEEe--CCe--EEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCC---eEEEEECCCCcE
Q 003236 730 VCWNTSGEYLASVS--DEL--VRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYE---TLELWNMTENKT 802 (837)
Q Consensus 730 l~~spdg~~Lasgs--Dg~--I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fspdg~~L~sgs~dg---~I~IwDl~s~~~ 802 (837)
..|+|+++.++..+ .+. |.+++...+ .. .............|+|||+.|+..+..+ .|+++++..+..
T Consensus 176 ~~~spdg~~~~~~~~~~~~~~i~~~~~~~~----~~-~~~~~~~~~~~p~~SPDG~~i~f~s~~~~~~~l~~~~~dg~~~ 250 (269)
T d2hqsa1 176 ADVSSDGKFMVMVSSNGGQQHIAKQDLATG----GV-QVLSSTFLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRFK 250 (269)
T ss_dssp EEECTTSSEEEEEEECSSCEEEEEEETTTC----CE-EECCCSSSCEEEEECTTSSEEEEEEEETTEEEEEEEETTSCCE
T ss_pred cccccccceeEEEeecCCceeeeEeecccc----cc-eEeecCccccceEECCCCCEEEEEEcCCCCcEEEEEECCCCCE
Confidence 89999999988877 444 444454433 12 2223445567889999999998776543 799999999988
Q ss_pred EEeccCCCCeeEEEEeC
Q 003236 803 LTLSAHDKLVSSLAAST 819 (837)
Q Consensus 803 ~~l~~h~~~V~sla~sp 819 (837)
..+....+.+...+|+|
T Consensus 251 ~~lt~~~g~~~~p~WSP 267 (269)
T d2hqsa1 251 ARLPATDGQVKFPAWSP 267 (269)
T ss_dssp EECCCSSSEEEEEEECC
T ss_pred EEEeCCCCcEEeEEeCC
Confidence 88888888899999998
|
| >d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Pseudomonas nautica [TaxId: 2743]
Probab=99.31 E-value=3e-11 Score=133.27 Aligned_cols=248 Identities=10% Similarity=0.068 Sum_probs=168.8
Q ss_pred cCCCCCeEEEEEcCCCCEEEEEE-CCCcEEEEeCCCCeEEEEec-cCCCCeEEEEEcCCCCE--EEEEeCCC--------
Q 003236 552 PASTSKVESCHFSPDGKLLATGG-HDKKAVLWCTESFTVKSTLE-EHTQWITDVRFSPSLSR--LATSSADR-------- 619 (837)
Q Consensus 552 ~~H~~~V~sl~fSpdg~~Lasgs-~Dg~I~VWd~~t~~~~~~l~-~h~~~I~~l~fspdg~~--Latgs~Dg-------- 619 (837)
..|...+.+..++|||++|++.. .++.|.++|++++++...+. .+...+..++|+|+++. ++..+.+.
T Consensus 68 d~hhP~~s~t~gtpDGr~lfV~d~~~~rVavIDl~t~k~~~ii~iP~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~ 147 (441)
T d1qnia2 68 DCHHPHISMTDGRYDGKYLFINDKANTRVARIRLDIMKTDKITHIPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGT 147 (441)
T ss_dssp CBCCCEEEEETTEEEEEEEEEEETTTTEEEEEETTTTEEEEEEECTTCCCEEEEEECCSSBCCEEEEEECSCEESSCSSS
T ss_pred cccCCCcceecccCCCCEEEEEcCCCCEEEEEECCCCcEeeEEecCCCCCccceEEeccCCEEEEEeccCCcccccCccc
Confidence 45666677777899999987665 67899999999999887765 35678999999999884 44433332
Q ss_pred ---------eEEEEEcCCCCceeEEeeccccceEEEEEcCCCCeEEEEEeC-----------------------------
Q 003236 620 ---------TVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDN----------------------------- 661 (837)
Q Consensus 620 ---------~I~IWDl~~~~~~~~~~~~h~~~V~sl~fspdg~~llasgs~----------------------------- 661 (837)
.+..+|..+.+... .+.. ...+..++|+|+|+++++++..
T Consensus 148 ~~~~~~~~~~~~~iD~~t~~v~~-qI~v-~~~p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~~d~i~v~n~p~~~~~ 225 (441)
T d1qnia2 148 DFSLDNSYTMFTAIDAETMDVAW-QVIV-DGNLDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVVVFNVERIAAA 225 (441)
T ss_dssp CCCGGGEEEEEEEEETTTCSEEE-EEEE-SSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSBCEEEEEEHHHHHHH
T ss_pred ccccccccceEEeecCccceeeE-EEec-CCCccceEECCCCCEEEEEecCCCceEEEeccCcceEEEEEeCCccceEEE
Confidence 23457777655422 2222 2457889999999988877643
Q ss_pred -----------CCcEEEEECCCCeeeeEEecCCCeeEEEEecCCCEEEEEE-cCCeEEEEECCCCe-----------EEE
Q 003236 662 -----------NSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAA-IENYISILDVETQV-----------CRL 718 (837)
Q Consensus 662 -----------Dg~I~vwDl~t~~~i~~~~~~~~i~sl~~sp~g~~llags-~dg~I~iwDl~s~~-----------~~~ 718 (837)
++.+.+++....+.+..+........+.++|||+++++++ .+++|.+||+++.. ++.
T Consensus 226 ~~dGk~~~v~~~~v~vvd~~~~~~v~~~IPvgksPhGv~vSPDGkyl~~~~~~~~tvsv~d~~k~~~~~~~~~~~~~~~~ 305 (441)
T d1qnia2 226 VKAGNFKTIGDSKVPVVDGRGESEFTRYIPVPKNPHGLNTSPDGKYFIANGKLSPTVSVIAIDKLDDLFEDKIELRDTIV 305 (441)
T ss_dssp HHTTCCBCCTTCCCCEEECSSSCSSEEEECCBSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHTTTSSCGGGGEE
T ss_pred ecCCCEEEeCCCCcEEEEcccCCceEEEEeCCCCccCceECCCCCEEEEeCCcCCcEEEEEeehhhhHhhccCCcceEEE
Confidence 2345555555566667777777788899999999987655 57999999986521 111
Q ss_pred EEcCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCC------CC-CceeEEEe-----ecCCCceEEEEEeCCCCEEEE
Q 003236 719 KLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGS------GS-KGECIHEL-----SCTGNKFHSCVFHPTFPSLLV 785 (837)
Q Consensus 719 ~l~~h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s------~~-~~~~i~~~-----~~~~~~I~sv~fspdg~~L~s 785 (837)
-.....-.....+|+++|..+.+.. |..|..|++.. +. ....+..+ .+|...+.+.+++|||++|++
T Consensus 306 ~~~~~glgplh~~fd~~g~~yts~~~ds~v~kw~~~~~~~~~~~~~~~~v~~~~~v~y~~GH~~~~~~~t~~pdGk~l~s 385 (441)
T d1qnia2 306 AEPELGLGPLHTTFDGRGNAYTTLFIDSQVCKWNIADAIKHYNGDRVNYIRQKLDVQYQPGHNHASLTESRDADGKWLVV 385 (441)
T ss_dssp ECCBCCSCEEEEEECSSSEEEEEETTTTEEEEEEHHHHHHHHTTCCCCCEEEEEECSSCEEEEEETTTTSTTCCCCEEEE
T ss_pred eecccccCcccceecCCceEEEcccccceEEEeccchhhhhhccCCCceeEeccccccCCCCCccccccccCCCCcEEEe
Confidence 1111112345568999998888877 99999999842 11 11234444 344445555678999999999
Q ss_pred EE---cCC----------eEEEEECCCCc
Q 003236 786 IG---CYE----------TLELWNMTENK 801 (837)
Q Consensus 786 gs---~dg----------~I~IwDl~s~~ 801 (837)
++ .|. .-.++|+...+
T Consensus 386 ~~k~s~dr~~~~g~~~~~~~q~~~i~~~~ 414 (441)
T d1qnia2 386 LSKFSKDRFLPVGPLHPENDQLIDISGEE 414 (441)
T ss_dssp EESCCGGGSCCCSSSCCEEEEEEECSSSS
T ss_pred cCccccccCcCCCCCCCccceeEEecCCe
Confidence 95 443 45677776544
|
| >d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme family: 3-carboxy-cis,cis-mucoante lactonizing enzyme domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme species: Neurospora crassa [TaxId: 5141]
Probab=99.21 E-value=2.3e-09 Score=116.11 Aligned_cols=268 Identities=10% Similarity=0.100 Sum_probs=165.3
Q ss_pred EEEEEEC--CCcEEEE--eCCCCeEE--EE-eccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeEE-eeccc
Q 003236 569 LLATGGH--DKKAVLW--CTESFTVK--ST-LEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRT-FTGHS 640 (837)
Q Consensus 569 ~Lasgs~--Dg~I~VW--d~~t~~~~--~~-l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~~~~~~~~-~~~h~ 640 (837)
.|++|+. ++.|+++ |.++++.. .. .......+..|+|++++++|++++. +.+..|.+......... .....
T Consensus 4 ~l~vGtyt~~~~i~~~~fd~~~~~l~~~~~~~~~~~~~~s~la~s~d~~~ly~~~~-~~~~~~~i~~~~~~~~~~~~~~~ 82 (365)
T d1jofa_ 4 HLMIGTWTPPGAIFTVQFDDEKLTCKLIKRTEIPQDEPISWMTFDHERKNIYGAAM-KKWSSFAVKSPTEIVHEASHPIG 82 (365)
T ss_dssp EEEEEESSSSCEEEEEEEETTTTEEEEEEEEECCTTCCCSEEEECTTSSEEEEEEB-TEEEEEEEEETTEEEEEEEEECC
T ss_pred EEEEEeecCCCCEEEEEEcCCCCeEEEeeeeeccCCCCCCEEEEcCCCCEEEEEeC-CcEEEEEEeCCCCeEEEeeecCC
Confidence 3566654 4566554 55555542 22 1234556778999999999988865 56888877753322211 12223
Q ss_pred cceEEEEEcCCCCeEEEEEe--CCCcEEEEECCC-CeeeeEE-----------------ecCCCeeEEEEecCCCEEEEE
Q 003236 641 TTVMSLDFHPSKEDLLCSCD--NNSEIRYWSINN-GSCAGVF-----------------KCQSGATQMRFQPRLGRILAA 700 (837)
Q Consensus 641 ~~V~sl~fspdg~~llasgs--~Dg~I~vwDl~t-~~~i~~~-----------------~~~~~i~sl~~sp~g~~llag 700 (837)
.....++++++++.++++.. ..+.|..+.+.. +.....+ .....+.++.|+|++++++++
T Consensus 83 ~~p~~v~~~~~~~~~~v~~a~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~h~h~v~~sPdG~~l~v~ 162 (365)
T d1jofa_ 83 GHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSA 162 (365)
T ss_dssp SSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEE
T ss_pred CCcEEEEECCCCCEEEEEEecCCCCEEEEeEccCCCCcceeEeeeecceecCcccCcccCCCCcceEEEECCCCCEEEEe
Confidence 44567788888875544432 245555554322 1111111 112357899999999999988
Q ss_pred Ec-CCeEEEEECCCC-eE--EEEEc--CCCCCEEEEEEcCCCCEEEEEe--CCeEEEEEcCCCCCcee--EEEeec----
Q 003236 701 AI-ENYISILDVETQ-VC--RLKLQ--GHKNQVHSVCWNTSGEYLASVS--DELVRVWSIGSGSKGEC--IHELSC---- 766 (837)
Q Consensus 701 s~-dg~I~iwDl~s~-~~--~~~l~--~h~~~V~sl~~spdg~~Lasgs--Dg~I~IwDl~s~~~~~~--i~~~~~---- 766 (837)
+. .+.|.+|+.... .. ...+. ......+.++|+|+++++++.. ++.|.+|++........ +.....
T Consensus 163 d~g~d~v~~~~~~~~g~~~~~~~~~~~~~g~gPr~i~f~pdg~~~yv~~e~~~~V~v~~~~~~~~~~~~~~~~~~~~~~~ 242 (365)
T d1jofa_ 163 DLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPG 242 (365)
T ss_dssp ETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTT
T ss_pred eCCCCEEEEEEccCCCceeeccceeecCCCCceEEEEECCCCceEEEeccCCCEEEEEEecCCCceEEEEeeeecccccc
Confidence 76 368888876543 22 22222 2456789999999999987777 78999999976543221 111111
Q ss_pred ----------CCCceEEEEEeCCCCEEEEEEcC------CeEEEEECCCCcEE-------EeccCCCCeeEEEEeC-CCC
Q 003236 767 ----------TGNKFHSCVFHPTFPSLLVIGCY------ETLELWNMTENKTL-------TLSAHDKLVSSLAAST-VNG 822 (837)
Q Consensus 767 ----------~~~~I~sv~fspdg~~L~sgs~d------g~I~IwDl~s~~~~-------~l~~h~~~V~sla~sp-dg~ 822 (837)
.......+.++|+|++|+++... ..|..|++.....+ ..........+++++| +|+
T Consensus 243 ~~~~~~~~~~~~~~~~~i~~spdG~~lyvsnr~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~G~~p~~i~~~p~~G~ 322 (365)
T d1jofa_ 243 IPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDE 322 (365)
T ss_dssp CCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTT
T ss_pred ccccccccccccCCccceEECCCCCEEEEEcccCCCccceEEEEEEecCCCceeeEeEeeEEEcCCCCccEEEecCCCCC
Confidence 11235678999999999888542 24777777543222 1123345678899998 789
Q ss_pred EEEEEE-CCCcEEEeC
Q 003236 823 MVASAS-HDKCVKIWK 837 (837)
Q Consensus 823 ~LaSgs-~DG~I~IWd 837 (837)
+|++++ .++.|.||+
T Consensus 323 ~l~va~~~s~~v~v~~ 338 (365)
T d1jofa_ 323 WMAITDDQEGWLEIYR 338 (365)
T ss_dssp EEEEECSSSCEEEEEE
T ss_pred EEEEEeCCCCeEEEEE
Confidence 777765 678999984
|
| >d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme family: 3-carboxy-cis,cis-mucoante lactonizing enzyme domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme species: Neurospora crassa [TaxId: 5141]
Probab=99.21 E-value=5.1e-09 Score=113.27 Aligned_cols=248 Identities=9% Similarity=0.011 Sum_probs=155.5
Q ss_pred CCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCC-CeEEEEe-ccCCCCeEEEEEcCCCCEEE--EEe-CCCeEEEEEcC
Q 003236 553 ASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES-FTVKSTL-EEHTQWITDVRFSPSLSRLA--TSS-ADRTVRVWDTE 627 (837)
Q Consensus 553 ~H~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t-~~~~~~l-~~h~~~I~~l~fspdg~~La--tgs-~Dg~I~IWDl~ 627 (837)
.+...+.-|+|++++++|+++.. +.+..|.+.. +...... .........+.++++++.++ ++. ..+.|..+.+.
T Consensus 37 ~~~~~~s~la~s~d~~~ly~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~p~~v~~~~~~~~~~v~~a~~~~~~v~~~~~~ 115 (365)
T d1jofa_ 37 PQDEPISWMTFDHERKNIYGAAM-KKWSSFAVKSPTEIVHEASHPIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFY 115 (365)
T ss_dssp CTTCCCSEEEECTTSSEEEEEEB-TEEEEEEEEETTEEEEEEEEECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEES
T ss_pred cCCCCCCEEEEcCCCCEEEEEeC-CcEEEEEEeCCCCeEEEeeecCCCCcEEEEECCCCCEEEEEEecCCCCEEEEeEcc
Confidence 34555778999999999988765 5677776653 2222221 12234456778888887543 332 24556555443
Q ss_pred CCCcee----------------EEeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCC-eeee--EEe---cCCCe
Q 003236 628 NPDYSL----------------RTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNG-SCAG--VFK---CQSGA 685 (837)
Q Consensus 628 ~~~~~~----------------~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~-~~i~--~~~---~~~~i 685 (837)
...... .........+.++.|+|+|++++++......|.+|++... .... ... .....
T Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~h~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~~~~g~gP 195 (365)
T d1jofa_ 116 KFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHP 195 (365)
T ss_dssp SSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCE
T ss_pred CCCCcceeEeeeecceecCcccCcccCCCCcceEEEECCCCCEEEEeeCCCCEEEEEEccCCCceeeccceeecCCCCce
Confidence 211100 0011122357899999999988877666678999886543 2221 111 24578
Q ss_pred eEEEEecCCCEEEEEEc-CCeEEEEECCCCe--EEEEEc-----------------CCCCCEEEEEEcCCCCEEEEEe--
Q 003236 686 TQMRFQPRLGRILAAAI-ENYISILDVETQV--CRLKLQ-----------------GHKNQVHSVCWNTSGEYLASVS-- 743 (837)
Q Consensus 686 ~sl~~sp~g~~llags~-dg~I~iwDl~s~~--~~~~l~-----------------~h~~~V~sl~~spdg~~Lasgs-- 743 (837)
..++|+|+++++++..+ ++.|.+|++.... .+.... .+......+.++|||++|+++.
T Consensus 196 r~i~f~pdg~~~yv~~e~~~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvsnr~ 275 (365)
T d1jofa_ 196 RWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRA 275 (365)
T ss_dssp EEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEE
T ss_pred EEEEECCCCceEEEeccCCCEEEEEEecCCCceEEEEeeeeccccccccccccccccccCCccceEECCCCCEEEEEccc
Confidence 89999999999887775 6899999987642 222111 1112356789999999998875
Q ss_pred CC-----eEEEEEcCCCCCce---eEEEeecCCCceEEEEEeC-CCCEEEEEEc-CCeEEEEECCCCc
Q 003236 744 DE-----LVRVWSIGSGSKGE---CIHELSCTGNKFHSCVFHP-TFPSLLVIGC-YETLELWNMTENK 801 (837)
Q Consensus 744 Dg-----~I~IwDl~s~~~~~---~i~~~~~~~~~I~sv~fsp-dg~~L~sgs~-dg~I~IwDl~s~~ 801 (837)
+. .|.+|++....... .+......+.....++++| +|++|+++.. ++.|.+|++....
T Consensus 276 ~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~G~~p~~i~~~p~~G~~l~va~~~s~~v~v~~~~~~~ 343 (365)
T d1jofa_ 276 NKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDEF 343 (365)
T ss_dssp SSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETTE
T ss_pred CCCccceEEEEEEecCCCceeeEeEeeEEEcCCCCccEEEecCCCCCEEEEEeCCCCeEEEEEEeCCc
Confidence 33 37778876543222 1122223345567799998 7898888864 5699999876554
|
| >d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: TolB, C-terminal domain family: TolB, C-terminal domain domain: TolB, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=99.19 E-value=1.1e-08 Score=104.09 Aligned_cols=221 Identities=15% Similarity=0.146 Sum_probs=150.2
Q ss_pred cCCCCCeEEEEEcCCCCEEEEEECCC---cEEEEeCCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeC-CCeEEEEEcC
Q 003236 552 PASTSKVESCHFSPDGKLLATGGHDK---KAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA-DRTVRVWDTE 627 (837)
Q Consensus 552 ~~H~~~V~sl~fSpdg~~Lasgs~Dg---~I~VWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~-Dg~I~IWDl~ 627 (837)
..+...+.+.+|||||+.||....+. .+.+.+...+... .+..+...+.+..|+|+++.++.... ++...++...
T Consensus 35 ~~~~~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~spdg~~i~~~~~~~~~~~~~~~~ 113 (269)
T d2hqsa1 35 HRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVR-QVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMD 113 (269)
T ss_dssp EEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEE-EEECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEE
T ss_pred ecCCCceeeeEECCCCCEEEEEEeeccCcceeeeecccCcee-EEeeeecccccceecCCCCeeeEeeecCCccceeecc
Confidence 34566688999999999999876543 4677777766554 34457788899999999998887664 3333333333
Q ss_pred CCCceeEEeeccccceEEEEEcCCCCeEEEEEeCCC--cEEEEECCCCeeeeEEecCCCeeEEEEecCCCEEEEEEcCC-
Q 003236 628 NPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNS--EIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIEN- 704 (837)
Q Consensus 628 ~~~~~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg--~I~vwDl~t~~~i~~~~~~~~i~sl~~sp~g~~llags~dg- 704 (837)
....................+++++..++++...++ .|.+.++..+................|+|++..++..+.++
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~ 193 (269)
T d2hqsa1 114 LASGQIRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQRITWEGSQNQDADVSSDGKFMVMVSSNGG 193 (269)
T ss_dssp TTTCCEEECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCEECCCSSSEEEEEEECTTSSEEEEEEECSS
T ss_pred cccccceeeeeccccccccccccccccceecccccCCceEeeeecccccceeeecccccccccccccccceeEEEeecCC
Confidence 222223344444555566778888887777776665 45666776665554444455577789999999998887764
Q ss_pred --eEEEEECCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEe--C--CeEEEEEcCCCCCceeEEEeecCCCceEEEEEeC
Q 003236 705 --YISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS--D--ELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHP 778 (837)
Q Consensus 705 --~I~iwDl~s~~~~~~l~~h~~~V~sl~~spdg~~Lasgs--D--g~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fsp 778 (837)
.|.++|...+... +..+........|+|||+.|+..+ . ..|+++++..+. ...+......+...+|+|
T Consensus 194 ~~~i~~~~~~~~~~~--~~~~~~~~~~p~~SPDG~~i~f~s~~~~~~~l~~~~~dg~~----~~~lt~~~g~~~~p~WSP 267 (269)
T d2hqsa1 194 QQHIAKQDLATGGVQ--VLSSTFLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRF----KARLPATDGQVKFPAWSP 267 (269)
T ss_dssp CEEEEEEETTTCCEE--ECCCSSSCEEEEECTTSSEEEEEEEETTEEEEEEEETTSCC----EEECCCSSSEEEEEEECC
T ss_pred ceeeeEeecccccce--EeecCccccceEECCCCCEEEEEEcCCCCcEEEEEECCCCC----EEEEeCCCCcEEeEEeCC
Confidence 5666676665442 333556677889999999987766 2 378999997652 334555567788889998
Q ss_pred C
Q 003236 779 T 779 (837)
Q Consensus 779 d 779 (837)
-
T Consensus 268 ~ 268 (269)
T d2hqsa1 268 Y 268 (269)
T ss_dssp C
T ss_pred C
Confidence 4
|
| >d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: All0351-like domain: Hypothetical protein All0351 homologue species: Nostoc punctiforme [TaxId: 272131]
Probab=99.11 E-value=1.4e-08 Score=106.44 Aligned_cols=235 Identities=10% Similarity=0.062 Sum_probs=159.4
Q ss_pred EEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEc
Q 003236 547 EFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDT 626 (837)
Q Consensus 547 ~~~~l~~H~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl 626 (837)
.+..+.... .+..++++|||+++++...+++|+.|+.... ...+......+.+++|+++|+++++...++.+.+|+.
T Consensus 20 v~~~~p~~~-~~e~iAv~pdG~l~vt~~~~~~I~~i~p~g~--~~~~~~~~~~~~gla~~~dG~l~v~~~~~~~~~~~~~ 96 (302)
T d2p4oa1 20 IITSFPVNT-FLENLASAPDGTIFVTNHEVGEIVSITPDGN--QQIHATVEGKVSGLAFTSNGDLVATGWNADSIPVVSL 96 (302)
T ss_dssp EEEEECTTC-CEEEEEECTTSCEEEEETTTTEEEEECTTCC--EEEEEECSSEEEEEEECTTSCEEEEEECTTSCEEEEE
T ss_pred EEEECCCCC-CcCCEEECCCCCEEEEeCCCCEEEEEeCCCC--EEEEEcCCCCcceEEEcCCCCeEEEecCCceEEEEEe
Confidence 344454333 4889999999999999988999999986543 2334456678999999999999999888888988887
Q ss_pred CCCCceeEEee--ccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeeEEec-----------CCCeeEEEEecC
Q 003236 627 ENPDYSLRTFT--GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-----------QSGATQMRFQPR 693 (837)
Q Consensus 627 ~~~~~~~~~~~--~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~-----------~~~i~sl~~sp~ 693 (837)
.........+. ........+++.+++. ++++.+.++.|+.+|...+........ ......+.+.
T Consensus 97 ~~~~~~~~~~~~~~~~~~~n~i~~~~~g~-~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ngi~~~-- 173 (302)
T d2p4oa1 97 VKSDGTVETLLTLPDAIFLNGITPLSDTQ-YLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKRF-- 173 (302)
T ss_dssp ECTTSCEEEEEECTTCSCEEEEEESSSSE-EEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEEE--
T ss_pred cccccceeeccccCCccccceeEEccCCC-EEeeccccccceeeeccCCcceeEecCCccceeeccCccccccccccc--
Confidence 65443333332 3446688999999975 666777788999999887764433321 1123445554
Q ss_pred CCEEEEE-EcCCeEEEEECCCCeEE---EEEcCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCC
Q 003236 694 LGRILAA-AIENYISILDVETQVCR---LKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTG 768 (837)
Q Consensus 694 g~~llag-s~dg~I~iwDl~s~~~~---~~l~~h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~ 768 (837)
+..++.+ +..+.|..++....... ..+. .......++|+++|.++++.. ++.|..|+.... ...+.......
T Consensus 174 ~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~-~~~~pdgia~d~dG~l~va~~~~~~V~~i~p~G~--~~~~~~~~~~~ 250 (302)
T d2p4oa1 174 GNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFV-EQTNIDDFAFDVEGNLYGATHIYNSVVRIAPDRS--TTIIAQAEQGV 250 (302)
T ss_dssp TTEEEEEETTTTEEEEEEBCTTSCBCCCEEEE-ESCCCSSEEEBTTCCEEEECBTTCCEEEECTTCC--EEEEECGGGTC
T ss_pred CCceeeecCCCCeEEecccccccccccccccc-CCCCCcceEECCCCCEEEEEcCCCcEEEECCCCC--EEEEEecCCCC
Confidence 4455544 45688998887654211 1111 233456799999999877766 888888876543 12333344445
Q ss_pred CceEEEEE---eCCCCEEEEEEcCC
Q 003236 769 NKFHSCVF---HPTFPSLLVIGCYE 790 (837)
Q Consensus 769 ~~I~sv~f---spdg~~L~sgs~dg 790 (837)
...++++| .+|++.|++++..+
T Consensus 251 ~~pt~vafg~~~~D~~~Lyvtt~~g 275 (302)
T d2p4oa1 251 IGSTAVAFGQTEGDCTAIYVVTNGG 275 (302)
T ss_dssp TTEEEEEECCSTTTTTEEEEEECTT
T ss_pred CCceEEEEcCCCCCCCEEEEECCCC
Confidence 66899999 67888888776543
|
| >d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Serine/threonine-protein kinase PknD species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.09 E-value=1.2e-08 Score=104.58 Aligned_cols=234 Identities=10% Similarity=-0.034 Sum_probs=154.5
Q ss_pred CCeEEEEEcCCCCEEEEE-eCCCeEEEEEcCCCCceeEEeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeee
Q 003236 598 QWITDVRFSPSLSRLATS-SADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCA 676 (837)
Q Consensus 598 ~~I~~l~fspdg~~Latg-s~Dg~I~IWDl~~~~~~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i 676 (837)
....+|+++++|+++++. +..+.|..++............+ ......+++++++. ++++....+.|++++-.+...+
T Consensus 14 ~~P~~vavd~dG~i~v~~~~~~~~i~~~~~~~~~~~~~~~~~-~~~p~gvav~~~g~-i~v~d~~~~~i~~~~~~~~~~~ 91 (260)
T d1rwia_ 14 LSPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNG-LYQPQGLAVDGAGT-VYVTDFNNRVVTLAAGSNNQTV 91 (260)
T ss_dssp CCEEEEEECTTCCEEEEECSSSCEEEEEC----CEEECCCCS-CCSCCCEEECTTCC-EEEEETTTEEEEECTTCSCCEE
T ss_pred CCCCEEEEcCCCCEEEEEcCCCCEEEEEcCCCceEEEeccCC-ccCceEEEEcCCCC-EEEeeeeeceeeeeeeccceee
Confidence 345899999999976665 44577777777654432222222 23467889999875 6666666666776666655555
Q ss_pred eEEecCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCC
Q 003236 677 GVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSG 755 (837)
Q Consensus 677 ~~~~~~~~i~sl~~sp~g~~llags~dg~I~iwDl~s~~~~~~l~~h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~ 755 (837)
...........+++.++++.+++-.....+..++..................+++++++++++++.. ++.|..+|....
T Consensus 92 ~~~~~~~~p~~iavd~~g~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~~~v~~~~~~~i~~~d~~~~ 171 (260)
T d1rwia_ 92 LPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESN 171 (260)
T ss_dssp CCCCSCCSEEEEEECTTCCEEEEEGGGTEEEEECTTCSSCEECCCCSCCSCCEEEECTTCCEEEEEGGGTEEEEECTTTC
T ss_pred eeeeeeeecccccccccceeEeeccccccccccccccceeeeeeecccCCcceeeecCCCCEeeeccccccccccccccc
Confidence 4444446678999999988766655567788888766543322222234567899999999877766 778999987754
Q ss_pred CCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEEEec-cCCCCeeEEEEeCCCCEEEEEECCCcEE
Q 003236 756 SKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLS-AHDKLVSSLAASTVNGMVASASHDKCVK 834 (837)
Q Consensus 756 ~~~~~i~~~~~~~~~I~sv~fspdg~~L~sgs~dg~I~IwDl~s~~~~~l~-~h~~~V~sla~spdg~~LaSgs~DG~I~ 834 (837)
. ..............+++++++..+++....+.|..++........+. ..-.....|+++++|.++++-..+++|+
T Consensus 172 ~---~~~~~~~~~~~p~gi~~d~~g~l~vsd~~~~~i~~~~~~~~~~~~~~~~~~~~P~~i~~d~~g~l~vad~~~~rI~ 248 (260)
T d1rwia_ 172 N---QVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTVLPFTGLNTPLAVAVDSDRTVYVADRGNDRVV 248 (260)
T ss_dssp C---EEECCCSSCCSEEEEEECTTCCEEEEETTTTEEEEECTTCSCCEECCCCSCCCEEEEEECTTCCEEEEEGGGTEEE
T ss_pred e---eeeeeccccCCCccceeeeeeeeeeeecCCCEEEEEeCCCCeEEEEccCCCCCeEEEEEeCCCCEEEEECCCCEEE
Confidence 2 22222233456788999999986666656778888887655443332 3335678999999998888766777776
Q ss_pred Ee
Q 003236 835 IW 836 (837)
Q Consensus 835 IW 836 (837)
.+
T Consensus 249 ~i 250 (260)
T d1rwia_ 249 KL 250 (260)
T ss_dssp EE
T ss_pred EE
Confidence 54
|
| >d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: All0351-like domain: Hypothetical protein All0351 homologue species: Nostoc punctiforme [TaxId: 272131]
Probab=99.08 E-value=2.4e-08 Score=104.68 Aligned_cols=238 Identities=10% Similarity=0.040 Sum_probs=160.1
Q ss_pred CCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeEEeeccccceEEEEEcCCCCeEEEEEeCCCc
Q 003236 585 ESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSE 664 (837)
Q Consensus 585 ~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~ 664 (837)
...+.+..+... ..+..+++.|||+++++...+++|+.|+... + ...+......+.+++|+++++ ++++...++.
T Consensus 16 ~~~~v~~~~p~~-~~~e~iAv~pdG~l~vt~~~~~~I~~i~p~g-~--~~~~~~~~~~~~gla~~~dG~-l~v~~~~~~~ 90 (302)
T d2p4oa1 16 APAKIITSFPVN-TFLENLASAPDGTIFVTNHEVGEIVSITPDG-N--QQIHATVEGKVSGLAFTSNGD-LVATGWNADS 90 (302)
T ss_dssp CCEEEEEEECTT-CCEEEEEECTTSCEEEEETTTTEEEEECTTC-C--EEEEEECSSEEEEEEECTTSC-EEEEEECTTS
T ss_pred CcccEEEECCCC-CCcCCEEECCCCCEEEEeCCCCEEEEEeCCC-C--EEEEEcCCCCcceEEEcCCCC-eEEEecCCce
Confidence 344555556432 3688999999999999999999998888664 2 444555667899999999987 5556666777
Q ss_pred EEEEECCCC--eeeeEEe--cCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEcC----------CCCCEEEE
Q 003236 665 IRYWSINNG--SCAGVFK--CQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQG----------HKNQVHSV 730 (837)
Q Consensus 665 I~vwDl~t~--~~i~~~~--~~~~i~sl~~sp~g~~llags~dg~I~iwDl~s~~~~~~l~~----------h~~~V~sl 730 (837)
+..|+.... ....... .......+++.+++..+++...++.|..+|...+........ ....+..+
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~n~i~~~~~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ngi 170 (302)
T d2p4oa1 91 IPVVSLVKSDGTVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL 170 (302)
T ss_dssp CEEEEEECTTSCEEEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE
T ss_pred EEEEEecccccceeeccccCCccccceeEEccCCCEEeeccccccceeeeccCCcceeEecCCccceeeccCcccccccc
Confidence 877776432 2222222 234578899999987777777788999999988754433221 11245666
Q ss_pred EEcCCCCEEEEEe--CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEEE--ec
Q 003236 731 CWNTSGEYLASVS--DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLT--LS 806 (837)
Q Consensus 731 ~~spdg~~Lasgs--Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fspdg~~L~sgs~dg~I~IwDl~s~~~~~--l~ 806 (837)
.++ +..++.+. .+.|+.+++...........+. .......++++++|..+++...++.|..|+........ ..
T Consensus 171 ~~~--~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~-~~~~pdgia~d~dG~l~va~~~~~~V~~i~p~G~~~~~~~~~ 247 (302)
T d2p4oa1 171 KRF--GNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFV-EQTNIDDFAFDVEGNLYGATHIYNSVVRIAPDRSTTIIAQAE 247 (302)
T ss_dssp EEE--TTEEEEEETTTTEEEEEEBCTTSCBCCCEEEE-ESCCCSSEEEBTTCCEEEECBTTCCEEEECTTCCEEEEECGG
T ss_pred ccc--CCceeeecCCCCeEEecccccccccccccccc-CCCCCcceEECCCCCEEEEEcCCCcEEEECCCCCEEEEEecC
Confidence 665 34444444 7889999887653322222222 23445679999999977777778899999876544332 23
Q ss_pred cCCCCeeEEEE---eCCCCEEEEEECC
Q 003236 807 AHDKLVSSLAA---STVNGMVASASHD 830 (837)
Q Consensus 807 ~h~~~V~sla~---spdg~~LaSgs~D 830 (837)
..-..+++++| ++|++.|+.++..
T Consensus 248 ~~~~~pt~vafg~~~~D~~~Lyvtt~~ 274 (302)
T d2p4oa1 248 QGVIGSTAVAFGQTEGDCTAIYVVTNG 274 (302)
T ss_dssp GTCTTEEEEEECCSTTTTTEEEEEECT
T ss_pred CCCCCceEEEEcCCCCCCCEEEEECCC
Confidence 34456899999 6788888766554
|
| >d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP) species: Squid (Loligo vulgaris) [TaxId: 6622]
Probab=99.05 E-value=5.9e-08 Score=102.50 Aligned_cols=241 Identities=9% Similarity=0.079 Sum_probs=157.3
Q ss_pred CCCCCeEEEEEcCCCCEEEEEEC-------CCcEEEEeCCCCeEEEEeccC----CCCeEEEEEcCCCCEEEEEeCCCeE
Q 003236 553 ASTSKVESCHFSPDGKLLATGGH-------DKKAVLWCTESFTVKSTLEEH----TQWITDVRFSPSLSRLATSSADRTV 621 (837)
Q Consensus 553 ~H~~~V~sl~fSpdg~~Lasgs~-------Dg~I~VWd~~t~~~~~~l~~h----~~~I~~l~fspdg~~Latgs~Dg~I 621 (837)
..-.....++|.++|+++++... +++|..||..++......... ...-..++|.+++..|+++...+.|
T Consensus 15 ~~~~g~EGpa~d~dG~ly~~~~~~~~~~~~~g~I~r~d~~~~~~~~~~~~~~~~~~g~P~Gl~~~~dg~~l~vad~~~~i 94 (314)
T d1pjxa_ 15 EDIPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADMRLGL 94 (314)
T ss_dssp CCCTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEETTTEE
T ss_pred cCCCCCeEeEEeCCCCEEEEECccccccccCCEEEEEECCCCcEEEEECCccccCCCcceeEEEeCCCCEEEEEECCCeE
Confidence 33344677899999998776432 467999998887655443221 2335789999999988888888889
Q ss_pred EEEEcCCCCceeEEeeccc---cceEEEEEcCCCCeEEEEEeC---------------CCcEEEEECCCCeeeeEEecCC
Q 003236 622 RVWDTENPDYSLRTFTGHS---TTVMSLDFHPSKEDLLCSCDN---------------NSEIRYWSINNGSCAGVFKCQS 683 (837)
Q Consensus 622 ~IWDl~~~~~~~~~~~~h~---~~V~sl~fspdg~~llasgs~---------------Dg~I~vwDl~t~~~i~~~~~~~ 683 (837)
..++.+.....+....... ...+.+++.++|..++ +-.. .|.|+.++.. ++.......-.
T Consensus 95 ~~~~~~g~~~~~~~~~~~g~~~~~pndl~~d~~G~lyv-td~~~~~~~~~~~~~~~~~~G~v~~~~~d-g~~~~~~~~~~ 172 (314)
T d1pjxa_ 95 LVVQTDGTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWI-TAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVDTAFQ 172 (314)
T ss_dssp EEEETTSCEEECCSBCTTSCBCBCCCEEEECTTSCEEE-EECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEEEEES
T ss_pred EEEeCCCcEEEEEeccccccccCCCcEEEECCCCCEEE-ecCccCcccccccceeccCCceEEEEeec-CceeEeeCCcc
Confidence 9999876432221111111 2357899999986444 4321 2345555543 44444444334
Q ss_pred CeeEEEEecCCC----EEEEE-EcCCeEEEEECCCC-eEE-----EEEcC-CCCCEEEEEEcCCCCEEEEEe-CCeEEEE
Q 003236 684 GATQMRFQPRLG----RILAA-AIENYISILDVETQ-VCR-----LKLQG-HKNQVHSVCWNTSGEYLASVS-DELVRVW 750 (837)
Q Consensus 684 ~i~sl~~sp~g~----~llag-s~dg~I~iwDl~s~-~~~-----~~l~~-h~~~V~sl~~spdg~~Lasgs-Dg~I~Iw 750 (837)
..+.++|+++++ .|+++ +..+.|..||+... ... ..+.. +......++++.+|+++++.. .+.|.+|
T Consensus 173 ~pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdGiavD~~GnlyVa~~~~g~I~~~ 252 (314)
T d1pjxa_ 173 FPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHIEVF 252 (314)
T ss_dssp SEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTEEEEE
T ss_pred eeeeeEECCCCCcceeEEEEEeecccceEEeeccCccccceeeEEEEccccccccceeeEEecCCcEEEEEcCCCEEEEE
Confidence 567889998764 45554 45688999987643 221 12222 223467899999999877766 7899999
Q ss_pred EcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEE-cCCeEEEEECC
Q 003236 751 SIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIG-CYETLELWNMT 798 (837)
Q Consensus 751 Dl~s~~~~~~i~~~~~~~~~I~sv~fspdg~~L~sgs-~dg~I~IwDl~ 798 (837)
|...+ ..+..+.......++|+|.++++.|++.. .++.|+.+++.
T Consensus 253 dp~~g---~~~~~i~~p~~~~t~~afg~d~~~lyVt~~~~g~i~~~~~~ 298 (314)
T d1pjxa_ 253 GPDGG---QPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQ 298 (314)
T ss_dssp CTTCB---SCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECS
T ss_pred eCCCC---EEEEEEECCCCCEEEEEEeCCCCEEEEEECCCCcEEEEECC
Confidence 98766 34444555566789999999998776655 45788888864
|
| >d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Lactonase Drp35 species: Staphylococcus aureus [TaxId: 1280]
Probab=99.03 E-value=4.3e-07 Score=95.79 Aligned_cols=230 Identities=11% Similarity=0.081 Sum_probs=153.1
Q ss_pred CCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCC----CeEEEEEcCC
Q 003236 553 ASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSAD----RTVRVWDTEN 628 (837)
Q Consensus 553 ~H~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~D----g~I~IWDl~~ 628 (837)
.....+..++|.++|+++++-...+.|+.|+.++......+.........++|++||+++++...+ +.|...+...
T Consensus 37 ~~~~~lEG~~~D~~G~Ly~~D~~~g~I~ri~p~g~~~~~~~~~~~~~p~gla~~~dG~l~va~~~~~~~~~~i~~~~~~~ 116 (319)
T d2dg1a1 37 KKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENG 116 (319)
T ss_dssp SSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTS
T ss_pred cCCcCcEeCEECCCCCEEEEECCCCEEEEEECCCCeEEEEEeCCCCCeeEEEECCCCCEEEEecCCCccceeEEEEcCCC
Confidence 344456789999999988877788999999988877666665566778999999999877765432 3344444444
Q ss_pred CCceeEEeecc---ccceEEEEEcCCCCeEEEEEeC------CCcEEEEECCCCeeeeEEecCCCeeEEEEecCCCEEEE
Q 003236 629 PDYSLRTFTGH---STTVMSLDFHPSKEDLLCSCDN------NSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILA 699 (837)
Q Consensus 629 ~~~~~~~~~~h---~~~V~sl~fspdg~~llasgs~------Dg~I~vwDl~t~~~i~~~~~~~~i~sl~~sp~g~~lla 699 (837)
.. +.....+ ...+..+++.++|. ++++... .+.+..++............-...+.++|+++++.|++
T Consensus 117 ~~--~~~~~~~~~~~~~~nd~~~d~~G~-l~vtd~~~~~~~~~g~v~~~~~dg~~~~~~~~~~~~pnGia~s~dg~~lyv 193 (319)
T d2dg1a1 117 DN--LQDIIEDLSTAYCIDDMVFDSKGG-FYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQNISVANGIALSTDEKVLWV 193 (319)
T ss_dssp CS--CEEEECSSSSCCCEEEEEECTTSC-EEEEECCCBTTBCCEEEEEECTTSCCEEEEEEEESSEEEEEECTTSSEEEE
T ss_pred ce--eeeeccCCCcccCCcceeEEeccc-eeecccccccccCcceeEEEecccceeEEEeeccceeeeeeeccccceEEE
Confidence 33 2222222 24577899999986 4444321 23466666654444433343455678999999998776
Q ss_pred EEc-CCeEEEEECCCC----eEE----EEEcCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeec---
Q 003236 700 AAI-ENYISILDVETQ----VCR----LKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSC--- 766 (837)
Q Consensus 700 gs~-dg~I~iwDl~s~----~~~----~~l~~h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~--- 766 (837)
+.. .+.|..||+... ... ............++++.+|+++++.. .+.|.+||- .+ +.+..+..
T Consensus 194 ad~~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G~l~Va~~~~g~V~~~~p-~G---~~l~~i~~P~~ 269 (319)
T d2dg1a1 194 TETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNK-RG---YPIGQILIPGR 269 (319)
T ss_dssp EEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTEEEEECT-TS---CEEEEEECTTG
T ss_pred ecccCCceEEEEEcCCCceeccccceeeeccCCccceeeeeEcCCCCEEEEEcCCCEEEEECC-CC---cEEEEEeCCCc
Confidence 654 689999997632 111 11111223467899999999887776 889999995 45 44544432
Q ss_pred ---CCCceEEEEEeCCCCEEEEEEcC
Q 003236 767 ---TGNKFHSCVFHPTFPSLLVIGCY 789 (837)
Q Consensus 767 ---~~~~I~sv~fspdg~~L~sgs~d 789 (837)
+...+++++|.++...+++...+
T Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~t~~~ 295 (319)
T d2dg1a1 270 DEGHMLRSTHPQFIPGTNQLIICSND 295 (319)
T ss_dssp GGTCSCBCCEEEECTTSCEEEEEEEC
T ss_pred CCCcCceeeeEEEeCCCCEEEEEcCC
Confidence 23457899999988877776653
|
| >d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Serine/threonine-protein kinase PknD species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.01 E-value=3e-08 Score=101.53 Aligned_cols=234 Identities=9% Similarity=-0.016 Sum_probs=149.0
Q ss_pred eEEEEEcCCCCEEEEE-ECCCcEEEEeCCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeEEe
Q 003236 558 VESCHFSPDGKLLATG-GHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTF 636 (837)
Q Consensus 558 V~sl~fSpdg~~Lasg-s~Dg~I~VWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~~~~~~~~~ 636 (837)
-..|+++++|+++++. +..+.|..++............-......++++++++++++....+.|++++-.+... +...
T Consensus 16 P~~vavd~dG~i~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~gvav~~~g~i~v~d~~~~~i~~~~~~~~~~-~~~~ 94 (260)
T d1rwia_ 16 PSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGTVYVTDFNNRVVTLAAGSNNQT-VLPF 94 (260)
T ss_dssp EEEEEECTTCCEEEEECSSSCEEEEEC----CEEECCCCSCCSCCCEEECTTCCEEEEETTTEEEEECTTCSCCE-ECCC
T ss_pred CCEEEEcCCCCEEEEEcCCCCEEEEEcCCCceEEEeccCCccCceEEEEcCCCCEEEeeeeeceeeeeeecccee-eeee
Confidence 4789999999976655 4456777776554333322222223467899999998877776666666665444322 2222
Q ss_pred eccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeee-EEecCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCe
Q 003236 637 TGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAG-VFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQV 715 (837)
Q Consensus 637 ~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~-~~~~~~~i~sl~~sp~g~~llags~dg~I~iwDl~s~~ 715 (837)
.......++++.+++. ++++-..+..+..++........ ..........+++.++++.+++...++.|..+|.+...
T Consensus 95 -~~~~~p~~iavd~~g~-i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~~~v~~~~~~~i~~~d~~~~~ 172 (260)
T d1rwia_ 95 -DGLNYPEGLAVDTQGA-VYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNN 172 (260)
T ss_dssp -CSCCSEEEEEECTTCC-EEEEEGGGTEEEEECTTCSSCEECCCCSCCSCCEEEECTTCCEEEEEGGGTEEEEECTTTCC
T ss_pred -eeeeecccccccccce-eEeeccccccccccccccceeeeeeecccCCcceeeecCCCCEeeeccccccccccccccce
Confidence 2235678999999876 55455556667777765433222 11223456789999998877777778899999988665
Q ss_pred EEEEEcCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEE
Q 003236 716 CRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLEL 794 (837)
Q Consensus 716 ~~~~l~~h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fspdg~~L~sgs~dg~I~I 794 (837)
........-.....|+++++|+++++.. .+.|..++..... ........-.....++++++|..+++-..++.|+.
T Consensus 173 ~~~~~~~~~~~p~gi~~d~~g~l~vsd~~~~~i~~~~~~~~~---~~~~~~~~~~~P~~i~~d~~g~l~vad~~~~rI~~ 249 (260)
T d1rwia_ 173 QVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTT---STVLPFTGLNTPLAVAVDSDRTVYVADRGNDRVVK 249 (260)
T ss_dssp EEECCCSSCCSEEEEEECTTCCEEEEETTTTEEEEECTTCSC---CEECCCCSCCCEEEEEECTTCCEEEEEGGGTEEEE
T ss_pred eeeeeccccCCCccceeeeeeeeeeeecCCCEEEEEeCCCCe---EEEEccCCCCCeEEEEEeCCCCEEEEECCCCEEEE
Confidence 4443334556788999999999888777 6788888765431 11111122345688999999875555455567776
Q ss_pred EEC
Q 003236 795 WNM 797 (837)
Q Consensus 795 wDl 797 (837)
++.
T Consensus 250 i~~ 252 (260)
T d1rwia_ 250 LTS 252 (260)
T ss_dssp ECC
T ss_pred EeC
Confidence 654
|
| >d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Brain tumor cg10719-pa species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=98.94 E-value=9.5e-07 Score=91.00 Aligned_cols=233 Identities=10% Similarity=0.161 Sum_probs=158.9
Q ss_pred CeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEecc------CCCCeEEEEEcCCC-CEEEEE-eCCCeEEEEEcCC
Q 003236 557 KVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEE------HTQWITDVRFSPSL-SRLATS-SADRTVRVWDTEN 628 (837)
Q Consensus 557 ~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~------h~~~I~~l~fspdg-~~Latg-s~Dg~I~IWDl~~ 628 (837)
.-..|+++++|+++++-...+.|++||.+ ++.+..+.. .......+++..+. .++++. +.++.|.+++...
T Consensus 24 ~P~gvavd~dg~i~VaD~~n~rI~v~d~~-G~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g 102 (279)
T d1q7fa_ 24 EPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYNQYG 102 (279)
T ss_dssp CEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEECTTS
T ss_pred CccEEEEcCCCCEEEEECCCCEEEEEeCC-CCEEEEecccCCCcccccccccccccccccccceeccCCccccccccccc
Confidence 35789999999988887778899999955 666666632 12234566666553 344433 3455777777653
Q ss_pred CCceeEEe-eccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeeEEec---CCCeeEEEEecCCCEEEEEEcCC
Q 003236 629 PDYSLRTF-TGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC---QSGATQMRFQPRLGRILAAAIEN 704 (837)
Q Consensus 629 ~~~~~~~~-~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~---~~~i~sl~~sp~g~~llags~dg 704 (837)
.. ...+ .........+++.+++. ++++....+.+.+++.. ++.+..+.. ......+++.++++.+++....+
T Consensus 103 -~~-~~~~~~~~~~~p~~~avd~~G~-i~v~~~~~~~~~~~~~~-g~~~~~~g~~~~~~~~~~i~~d~~g~i~v~d~~~~ 178 (279)
T d1q7fa_ 103 -QF-VRKFGATILQHPRGVTVDNKGR-IIVVECKVMRVIIFDQN-GNVLHKFGCSKHLEFPNGVVVNDKQEIFISDNRAH 178 (279)
T ss_dssp -CE-EEEECTTTCSCEEEEEECTTSC-EEEEETTTTEEEEECTT-SCEEEEEECTTTCSSEEEEEECSSSEEEEEEGGGT
T ss_pred -cc-eeecCCCcccccceeccccCCc-EEEEeeccceeeEeccC-CceeecccccccccccceeeeccceeEEeeecccc
Confidence 32 3333 33456678899998876 44455556778888865 556666543 23467888888887766666778
Q ss_pred eEEEEECCCCeEEEEEc--CCCCCEEEEEEcCCCCEEEEEe--CCeEEEEEcCCCCCceeEEEeec--CCCceEEEEEeC
Q 003236 705 YISILDVETQVCRLKLQ--GHKNQVHSVCWNTSGEYLASVS--DELVRVWSIGSGSKGECIHELSC--TGNKFHSCVFHP 778 (837)
Q Consensus 705 ~I~iwDl~s~~~~~~l~--~h~~~V~sl~~spdg~~Lasgs--Dg~I~IwDl~s~~~~~~i~~~~~--~~~~I~sv~fsp 778 (837)
.|.+||.. ++.+..+. +.......|+++++|+++++-. ++.|.+|+.. + +.+..+.. .......+++.+
T Consensus 179 ~V~~~d~~-G~~~~~~g~~g~~~~P~giavD~~G~i~Vad~~~~~~v~~f~~~-G---~~~~~~~~~~~~~~p~~vav~~ 253 (279)
T d1q7fa_ 179 CVKVFNYE-GQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQD-G---QLISALESKVKHAQCFDVALMD 253 (279)
T ss_dssp EEEEEETT-CCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECTT-S---CEEEEEEESSCCSCEEEEEEET
T ss_pred ceeeeecC-CceeeeecccccccCCcccccccCCeEEEEECCCCcEEEEECCC-C---CEEEEEeCCCCCCCEeEEEEeC
Confidence 99999975 45565653 3455688999999999887755 4479999843 3 44444432 234678999999
Q ss_pred CCCEEEEEEcCCeEEEEECCCC
Q 003236 779 TFPSLLVIGCYETLELWNMTEN 800 (837)
Q Consensus 779 dg~~L~sgs~dg~I~IwDl~s~ 800 (837)
+|. |++++.++.|++|.....
T Consensus 254 dG~-l~V~~~n~~v~~fr~~~~ 274 (279)
T d1q7fa_ 254 DGS-VVLASKDYRLYIYRYVQL 274 (279)
T ss_dssp TTE-EEEEETTTEEEEEECSCC
T ss_pred CCc-EEEEeCCCeEEEEEeeee
Confidence 986 666778889999987654
|
| >d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Lactonase Drp35 species: Staphylococcus aureus [TaxId: 1280]
Probab=98.91 E-value=1.2e-06 Score=92.31 Aligned_cols=231 Identities=9% Similarity=0.054 Sum_probs=149.4
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeEEeeccccceEEEEEcCCCCeEEEEEe---CCCcEEEEECCCC
Q 003236 597 TQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCD---NNSEIRYWSINNG 673 (837)
Q Consensus 597 ~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~sl~fspdg~~llasgs---~Dg~I~vwDl~t~ 673 (837)
...+..++|.++|+++++-...+.|+.|+..+... ...+.........++++++|..+++..+ ..+.|...+....
T Consensus 39 ~~~lEG~~~D~~G~Ly~~D~~~g~I~ri~p~g~~~-~~~~~~~~~~p~gla~~~dG~l~va~~~~~~~~~~i~~~~~~~~ 117 (319)
T d2dg1a1 39 GLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEI-KRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGD 117 (319)
T ss_dssp CCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCE-EEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSC
T ss_pred CcCcEeCEECCCCCEEEEECCCCEEEEEECCCCeE-EEEEeCCCCCeeEEEECCCCCEEEEecCCCccceeEEEEcCCCc
Confidence 34457899999999777777889999999887543 4444445567889999999874443322 1334556666655
Q ss_pred eeeeEEec---CCCeeEEEEecCCCEEEEEEc------CCeEEEEECCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEe-
Q 003236 674 SCAGVFKC---QSGATQMRFQPRLGRILAAAI------ENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS- 743 (837)
Q Consensus 674 ~~i~~~~~---~~~i~sl~~sp~g~~llags~------dg~I~iwDl~s~~~~~~l~~h~~~V~sl~~spdg~~Lasgs- 743 (837)
........ ......+++.++|+.+++... .+.+..++........... .-...+.|+|+++++.|+.+.
T Consensus 118 ~~~~~~~~~~~~~~~nd~~~d~~G~l~vtd~~~~~~~~~g~v~~~~~dg~~~~~~~~-~~~~pnGia~s~dg~~lyvad~ 196 (319)
T d2dg1a1 118 NLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQ-NISVANGIALSTDEKVLWVTET 196 (319)
T ss_dssp SCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEEE-EESSEEEEEECTTSSEEEEEEG
T ss_pred eeeeeccCCCcccCCcceeEEeccceeecccccccccCcceeEEEecccceeEEEee-ccceeeeeeeccccceEEEecc
Confidence 54444432 234678899999875554322 2346666655443222222 234567899999999776665
Q ss_pred -CCeEEEEEcCCCCCce-eE----EEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE-Eec------cCCC
Q 003236 744 -DELVRVWSIGSGSKGE-CI----HELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLS------AHDK 810 (837)
Q Consensus 744 -Dg~I~IwDl~s~~~~~-~i----~~~~~~~~~I~sv~fspdg~~L~sgs~dg~I~IwDl~s~~~~-~l~------~h~~ 810 (837)
.+.|..||+....... .. ............+++..+|+..++....+.|.+||. +++.+ .+. .+..
T Consensus 197 ~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G~l~Va~~~~g~V~~~~p-~G~~l~~i~~P~~~~~~~~ 275 (319)
T d2dg1a1 197 TANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNK-RGYPIGQILIPGRDEGHML 275 (319)
T ss_dssp GGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTEEEEECT-TSCEEEEEECTTGGGTCSC
T ss_pred cCCceEEEEEcCCCceeccccceeeeccCCccceeeeeEcCCCCEEEEEcCCCEEEEECC-CCcEEEEEeCCCcCCCcCc
Confidence 7899999987542211 11 111112234567999999997777778889999996 56655 322 3344
Q ss_pred CeeEEEEeCCCCEEEEEECC
Q 003236 811 LVSSLAASTVNGMVASASHD 830 (837)
Q Consensus 811 ~V~sla~spdg~~LaSgs~D 830 (837)
.+++++|.+++..+++...|
T Consensus 276 ~~~~~~~~~~~~~~~~t~~~ 295 (319)
T d2dg1a1 276 RSTHPQFIPGTNQLIICSND 295 (319)
T ss_dssp BCCEEEECTTSCEEEEEEEC
T ss_pred eeeeEEEeCCCCEEEEEcCC
Confidence 68899999988766665543
|
| >d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.88 E-value=3.5e-07 Score=101.79 Aligned_cols=273 Identities=12% Similarity=0.045 Sum_probs=161.8
Q ss_pred CCeEEEEEcCCCCEEEEEE---------CCCcEEEEeCCCCeEEEEe--ccCCCCeEEEEEcCCCCEEEEEeCCCeEEEE
Q 003236 556 SKVESCHFSPDGKLLATGG---------HDKKAVLWCTESFTVKSTL--EEHTQWITDVRFSPSLSRLATSSADRTVRVW 624 (837)
Q Consensus 556 ~~V~sl~fSpdg~~Lasgs---------~Dg~I~VWd~~t~~~~~~l--~~h~~~I~~l~fspdg~~Latgs~Dg~I~IW 624 (837)
-.+....||||+++|+... ..+.+.|||+.++...... ......+....|+|||+.||... ++.|.+.
T Consensus 61 ~~~~~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~d~~~~~~~~l~~~~~~~~~l~~~~wSPDG~~iafv~-~~nl~~~ 139 (465)
T d1xfda1 61 LRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIF-ENNIYYC 139 (465)
T ss_dssp TTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEECCCTTCCSCCCSBCCBCSSTTCEEEEE-TTEEEEE
T ss_pred cccceeEECCCCCeEEEEEcccceeEeeccccEEEEEccCCceeeccCccCCccccceeeeccCCceEEEEe-cceEEEE
Confidence 3567788999999988764 3467899999987654332 23345567789999999998875 6678888
Q ss_pred EcCCCCceeEEeeccccce-----------------EEEEEcCCCCeEEEEEeCCCcE----------------------
Q 003236 625 DTENPDYSLRTFTGHSTTV-----------------MSLDFHPSKEDLLCSCDNNSEI---------------------- 665 (837)
Q Consensus 625 Dl~~~~~~~~~~~~h~~~V-----------------~sl~fspdg~~llasgs~Dg~I---------------------- 665 (837)
+..++.....+..+....| ..+.|+|||..+++.--.+..|
T Consensus 140 ~~~~~~~~~lt~~g~~~~i~nG~~d~vyeee~~~~~~a~~WSPDgk~iaf~~~D~s~V~~~~~~~~~~~~~p~~~~~~Yp 219 (465)
T d1xfda1 140 AHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYP 219 (465)
T ss_dssp SSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECC
T ss_pred ecCCCceEEEecccCcceeeccccchhhhhhhccccceEEECCCCCeEEEEEecccccceeecccccccccceeeeeecc
Confidence 8876554333322222222 4678999999887765444433
Q ss_pred -----------EEEECCCCeeeeEEec-------CCCeeEEEEecCCCEEEEEEc-C---CeEEEEECCCCeEEEEEcCC
Q 003236 666 -----------RYWSINNGSCAGVFKC-------QSGATQMRFQPRLGRILAAAI-E---NYISILDVETQVCRLKLQGH 723 (837)
Q Consensus 666 -----------~vwDl~t~~~i~~~~~-------~~~i~sl~~sp~g~~llags~-d---g~I~iwDl~s~~~~~~l~~h 723 (837)
.++|+.++........ ..-+..+.|+++++.++.... + ..|.++|..++++...+..+
T Consensus 220 ~~G~~np~~~l~v~d~~~~~~~~~~~~~~~~~~~~~y~~~~~W~~d~~~~~~~~nR~q~~~~i~~~d~~tg~~~~~~~e~ 299 (465)
T d1xfda1 220 KAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDE 299 (465)
T ss_dssp BTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEE
T ss_pred ccCCCCCceeEEEEecCCCcEEEEEeccCcCccccceeeeeEEcCCCeEEEEEEccccccceEEEEcCCCCcEEEEEEEc
Confidence 3444433322111110 001456889888765554433 2 26888999998776555432
Q ss_pred -CCCE----EEEEEcCCCCEEEE--Ee--CC--eEEEEEcCCC---CCceeEEEeecCCCceEEE-EEeCCCCEEEEEEc
Q 003236 724 -KNQV----HSVCWNTSGEYLAS--VS--DE--LVRVWSIGSG---SKGECIHELSCTGNKFHSC-VFHPTFPSLLVIGC 788 (837)
Q Consensus 724 -~~~V----~sl~~spdg~~Las--gs--Dg--~I~IwDl~s~---~~~~~i~~~~~~~~~I~sv-~fspdg~~L~sgs~ 788 (837)
...| ....|++||+.++. .+ +| .++.+++... .....+..+....-.|..+ .|+.+++.|+..+.
T Consensus 300 ~~~wv~~~~~~p~~~~dg~~~~fi~~se~~g~~~ly~~~~~~~~~~~~~~~~~~LT~G~w~V~~i~~~d~~~~~vyF~a~ 379 (465)
T d1xfda1 300 SEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSGDWDVTKILAYDEKGNKIYFLST 379 (465)
T ss_dssp CSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCCSSSCEEEEEEEETTTTEEEEEES
T ss_pred CCceEeccCCceeEccCCCeeEEEEeeeecccCceEEEEeccccccCCCceeEEeccCCceEEEEEEEcCCCCEEEEEEe
Confidence 2222 34578999984332 22 33 4444443211 1112223333334455555 68998888776554
Q ss_pred CC-----eEEEEECCCCcEEE-e---ccCCCCeeEEEEeCCCCEEEEEEC
Q 003236 789 YE-----TLELWNMTENKTLT-L---SAHDKLVSSLAASTVNGMVASASH 829 (837)
Q Consensus 789 dg-----~I~IwDl~s~~~~~-l---~~h~~~V~sla~spdg~~LaSgs~ 829 (837)
.. .|+-.++..+.... + .........+.|||++++++..+.
T Consensus 380 ~~~p~~~hly~v~l~g~~~~~~lt~~~~~~~~~~~~~~S~~~~y~v~~~s 429 (465)
T d1xfda1 380 EDLPRRRQLYSANTVGNFNRQCLSCDLVENCTYFSASFSHSMDFFLLKCE 429 (465)
T ss_dssp SSCTTCCEEEEECSSTTCCCBCSSTTSSSSCCCCEEEECTTSSEEEEECC
T ss_pred CCCCCceEEEEEECCCCCcceeeccccCCCCCEEEEEECCCCCEEEEEee
Confidence 32 35555555443221 1 134456779999999998875543
|
| >d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Brain tumor cg10719-pa species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=98.88 E-value=1.2e-06 Score=90.12 Aligned_cols=229 Identities=13% Similarity=0.139 Sum_probs=156.6
Q ss_pred CeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeEEeec------cccceEEEEEcCCCCeEEEE-EeCCCcEEEEECC
Q 003236 599 WITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTG------HSTTVMSLDFHPSKEDLLCS-CDNNSEIRYWSIN 671 (837)
Q Consensus 599 ~I~~l~fspdg~~Latgs~Dg~I~IWDl~~~~~~~~~~~~------h~~~V~sl~fspdg~~llas-gs~Dg~I~vwDl~ 671 (837)
....|+++++++++++-...+.|++||.+. .. +..+.. .......+++..+...++++ .+.++.|.+++..
T Consensus 24 ~P~gvavd~dg~i~VaD~~n~rI~v~d~~G-~~-~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 101 (279)
T d1q7fa_ 24 EPSGVAVNAQNDIIVADTNNHRIQIFDKEG-RF-KFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYNQY 101 (279)
T ss_dssp CEEEEEECTTCCEEEEEGGGTEEEEECTTS-CE-EEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEECTT
T ss_pred CccEEEEcCCCCEEEEECCCCEEEEEeCCC-CE-EEEecccCCCcccccccccccccccccccceeccCCcccccccccc
Confidence 468999999999887777788999999763 32 333321 11234556666654444444 4455677777764
Q ss_pred CCeeeeEEec--CCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEE--cCCCCCEEEEEEcCCCCEEEEEe-CCe
Q 003236 672 NGSCAGVFKC--QSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKL--QGHKNQVHSVCWNTSGEYLASVS-DEL 746 (837)
Q Consensus 672 t~~~i~~~~~--~~~i~sl~~sp~g~~llags~dg~I~iwDl~s~~~~~~l--~~h~~~V~sl~~spdg~~Lasgs-Dg~ 746 (837)
++....+.. ......+++.+++..+++....+.+.+++.. ++.+..+ ..+......+++++++.++++.. .+.
T Consensus 102 -g~~~~~~~~~~~~~p~~~avd~~G~i~v~~~~~~~~~~~~~~-g~~~~~~g~~~~~~~~~~i~~d~~g~i~v~d~~~~~ 179 (279)
T d1q7fa_ 102 -GQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQN-GNVLHKFGCSKHLEFPNGVVVNDKQEIFISDNRAHC 179 (279)
T ss_dssp -SCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECTTTCSSEEEEEECSSSEEEEEEGGGTE
T ss_pred -ccceeecCCCcccccceeccccCCcEEEEeeccceeeEeccC-CceeecccccccccccceeeeccceeEEeeeccccc
Confidence 565555543 3456789999998877777777888888865 4455554 34566788999999998887777 789
Q ss_pred EEEEEcCCCCCceeEEEee--cCCCceEEEEEeCCCCEEEEEEc-CCeEEEEECCCCcEE-Ee--ccCCCCeeEEEEeCC
Q 003236 747 VRVWSIGSGSKGECIHELS--CTGNKFHSCVFHPTFPSLLVIGC-YETLELWNMTENKTL-TL--SAHDKLVSSLAASTV 820 (837)
Q Consensus 747 I~IwDl~s~~~~~~i~~~~--~~~~~I~sv~fspdg~~L~sgs~-dg~I~IwDl~s~~~~-~l--~~h~~~V~sla~spd 820 (837)
|++||... ..+..+. +.......++++++|+.+++-.. +..|.+|+. +++.+ .+ .........|++.++
T Consensus 180 V~~~d~~G----~~~~~~g~~g~~~~P~giavD~~G~i~Vad~~~~~~v~~f~~-~G~~~~~~~~~~~~~~p~~vav~~d 254 (279)
T d1q7fa_ 180 VKVFNYEG----QYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQ-DGQLISALESKVKHAQCFDVALMDD 254 (279)
T ss_dssp EEEEETTC----CEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECT-TSCEEEEEEESSCCSCEEEEEEETT
T ss_pred eeeeecCC----ceeeeecccccccCCcccccccCCeEEEEECCCCcEEEEECC-CCCEEEEEeCCCCCCCEeEEEEeCC
Confidence 99999754 3444443 23445789999999985555443 347999985 46654 33 233346889999999
Q ss_pred CCEEEEEECCCcEEEeC
Q 003236 821 NGMVASASHDKCVKIWK 837 (837)
Q Consensus 821 g~~LaSgs~DG~I~IWd 837 (837)
|.+++ ++.++.|++|+
T Consensus 255 G~l~V-~~~n~~v~~fr 270 (279)
T d1q7fa_ 255 GSVVL-ASKDYRLYIYR 270 (279)
T ss_dssp TEEEE-EETTTEEEEEE
T ss_pred CcEEE-EeCCCeEEEEE
Confidence 97555 56789999985
|
| >d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP) species: Squid (Loligo vulgaris) [TaxId: 6622]
Probab=98.87 E-value=7.1e-07 Score=93.91 Aligned_cols=236 Identities=8% Similarity=-0.022 Sum_probs=149.6
Q ss_pred CCeEEEEEcCCCCEEEEEeC-------CCeEEEEEcCCCCceeEEee---ccccceEEEEEcCCCCeEEEEEeCCCcEEE
Q 003236 598 QWITDVRFSPSLSRLATSSA-------DRTVRVWDTENPDYSLRTFT---GHSTTVMSLDFHPSKEDLLCSCDNNSEIRY 667 (837)
Q Consensus 598 ~~I~~l~fspdg~~Latgs~-------Dg~I~IWDl~~~~~~~~~~~---~h~~~V~sl~fspdg~~llasgs~Dg~I~v 667 (837)
.....++|.++|+++++... +++|..||..++........ ........++|.++++.+++ ++....|..
T Consensus 18 ~g~EGpa~d~dG~ly~~~~~~~~~~~~~g~I~r~d~~~~~~~~~~~~~~~~~~g~P~Gl~~~~dg~~l~v-ad~~~~i~~ 96 (314)
T d1pjxa_ 18 PGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFV-ADMRLGLLV 96 (314)
T ss_dssp TTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEE-EETTTEEEE
T ss_pred CCCeEeEEeCCCCEEEEECccccccccCCEEEEEECCCCcEEEEECCccccCCCcceeEEEeCCCCEEEE-EECCCeEEE
Confidence 34677899999997776433 46788999887654222111 11234578999999876554 444567888
Q ss_pred EECCCCeeeeEEec-C----CCeeEEEEecCCCEEEEEEc---------------CCeEEEEECCCCeEEEEEcCCCCCE
Q 003236 668 WSINNGSCAGVFKC-Q----SGATQMRFQPRLGRILAAAI---------------ENYISILDVETQVCRLKLQGHKNQV 727 (837)
Q Consensus 668 wDl~t~~~i~~~~~-~----~~i~sl~~sp~g~~llags~---------------dg~I~iwDl~s~~~~~~l~~h~~~V 727 (837)
+|............ . ...+.+++.++|+.+++-.. .|.|+.++.. ++..... ..-...
T Consensus 97 ~~~~g~~~~~~~~~~~g~~~~~pndl~~d~~G~lyvtd~~~~~~~~~~~~~~~~~~G~v~~~~~d-g~~~~~~-~~~~~p 174 (314)
T d1pjxa_ 97 VQTDGTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVD-TAFQFP 174 (314)
T ss_dssp EETTSCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEE-EEESSE
T ss_pred EeCCCcEEEEEeccccccccCCCcEEEECCCCCEEEecCccCcccccccceeccCCceEEEEeec-CceeEee-CCccee
Confidence 89876543322211 1 13577999999877665322 2345555543 2322222 223345
Q ss_pred EEEEEcCCCC----EEEEEe--CCeEEEEEcCCCCCcee---EEEeec-CCCceEEEEEeCCCCEEEEEEcCCeEEEEEC
Q 003236 728 HSVCWNTSGE----YLASVS--DELVRVWSIGSGSKGEC---IHELSC-TGNKFHSCVFHPTFPSLLVIGCYETLELWNM 797 (837)
Q Consensus 728 ~sl~~spdg~----~Lasgs--Dg~I~IwDl~s~~~~~~---i~~~~~-~~~~I~sv~fspdg~~L~sgs~dg~I~IwDl 797 (837)
+.++|++++. +|+++. .+.|..||+........ ...+.. .......+++..+|+..++....+.|.+||.
T Consensus 175 NGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdGiavD~~GnlyVa~~~~g~I~~~dp 254 (314)
T d1pjxa_ 175 NGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHIEVFGP 254 (314)
T ss_dssp EEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTEEEEECT
T ss_pred eeeEECCCCCcceeEEEEEeecccceEEeeccCccccceeeEEEEccccccccceeeEEecCCcEEEEEcCCCEEEEEeC
Confidence 7899998765 455544 77899998865422111 112222 1234567999999997777777889999999
Q ss_pred CCCcEE-EeccCCCCeeEEEEeCCCC-EEEEEECCCcEEEe
Q 003236 798 TENKTL-TLSAHDKLVSSLAASTVNG-MVASASHDKCVKIW 836 (837)
Q Consensus 798 ~s~~~~-~l~~h~~~V~sla~spdg~-~LaSgs~DG~I~IW 836 (837)
+.++.+ .+......+++++|.+|++ ++++.+.+|.|...
T Consensus 255 ~~g~~~~~i~~p~~~~t~~afg~d~~~lyVt~~~~g~i~~~ 295 (314)
T d1pjxa_ 255 DGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKF 295 (314)
T ss_dssp TCBSCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEE
T ss_pred CCCEEEEEEECCCCCEEEEEEeCCCCEEEEEECCCCcEEEE
Confidence 887755 4555567889999999997 45566667777654
|
| >d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.76 E-value=2.6e-07 Score=102.97 Aligned_cols=260 Identities=13% Similarity=0.124 Sum_probs=157.3
Q ss_pred EEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEecc---CCCCeEEEEEcCCCCEEEEEe---------CCCeEEEEEcCC
Q 003236 561 CHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEE---HTQWITDVRFSPSLSRLATSS---------ADRTVRVWDTEN 628 (837)
Q Consensus 561 l~fSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~---h~~~I~~l~fspdg~~Latgs---------~Dg~I~IWDl~~ 628 (837)
+.|.+++.++.. ..+|.|.+||+.+++....+.. ....+....|+||+++|+... ..+.+.|||+.+
T Consensus 22 ~~W~~~~~~~~~-~~~g~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~d~~~ 100 (465)
T d1xfda1 22 AKWISDTEFIYR-EQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPH 100 (465)
T ss_dssp CCBSSSSCBCCC-CSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSS
T ss_pred CEEeCCCcEEEE-eCCCcEEEEECCCCCEEEEEcCccccccccceeEECCCCCeEEEEEcccceeEeeccccEEEEEccC
Confidence 357788876653 5678899999987765544433 223677889999999988764 357899999998
Q ss_pred CCce-eEEeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeeEEecCC-------------------CeeEE
Q 003236 629 PDYS-LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQS-------------------GATQM 688 (837)
Q Consensus 629 ~~~~-~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~~~-------------------~i~sl 688 (837)
+... +.........+....|+|+|..++++. ++.|++.+...+..+....... .-..+
T Consensus 101 ~~~~~l~~~~~~~~~l~~~~wSPDG~~iafv~--~~nl~~~~~~~~~~~~lt~~g~~~~i~nG~~d~vyeee~~~~~~a~ 178 (465)
T d1xfda1 101 GDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIF--ENNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAH 178 (465)
T ss_dssp CCCEECCCTTCCSCCCSBCCBCSSTTCEEEEE--TTEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEE
T ss_pred CceeeccCccCCccccceeeeccCCceEEEEe--cceEEEEecCCCceEEEecccCcceeeccccchhhhhhhccccceE
Confidence 6642 111222345566789999999887665 6779999887776555443211 12467
Q ss_pred EEecCCCEEEEEEcC-Ce---------------------------------EEEEECCCCeEEEEEc------CCCCCEE
Q 003236 689 RFQPRLGRILAAAIE-NY---------------------------------ISILDVETQVCRLKLQ------GHKNQVH 728 (837)
Q Consensus 689 ~~sp~g~~llags~d-g~---------------------------------I~iwDl~s~~~~~~l~------~h~~~V~ 728 (837)
.|+|||++|+....| .. +.++|+.++....... .....+.
T Consensus 179 ~WSPDgk~iaf~~~D~s~V~~~~~~~~~~~~~p~~~~~~Yp~~G~~np~~~l~v~d~~~~~~~~~~~~~~~~~~~~~y~~ 258 (465)
T d1xfda1 179 WWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYIT 258 (465)
T ss_dssp EECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEE
T ss_pred EECCCCCeEEEEEecccccceeecccccccccceeeeeeccccCCCCCceeEEEEecCCCcEEEEEeccCcCccccceee
Confidence 799999999887532 22 3444554432211111 1122367
Q ss_pred EEEEcCCCCEEEEEeC--C---eEEEEEcCCCCCceeEEEeecCCCc----eEEEEEeCCCCEEEEE--E-cCC--eEEE
Q 003236 729 SVCWNTSGEYLASVSD--E---LVRVWSIGSGSKGECIHELSCTGNK----FHSCVFHPTFPSLLVI--G-CYE--TLEL 794 (837)
Q Consensus 729 sl~~spdg~~LasgsD--g---~I~IwDl~s~~~~~~i~~~~~~~~~----I~sv~fspdg~~L~sg--s-~dg--~I~I 794 (837)
.+.|++++++++...+ . .|.++|..++.... +... ..... -....|+++|..++.. + .+| .++.
T Consensus 259 ~~~W~~d~~~~~~~~nR~q~~~~i~~~d~~tg~~~~-~~~e-~~~~wv~~~~~~p~~~~dg~~~~fi~~se~~g~~~ly~ 336 (465)
T d1xfda1 259 MVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTK-KHED-ESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYH 336 (465)
T ss_dssp EEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEE-EEEE-ECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEE
T ss_pred eeEEcCCCeEEEEEEccccccceEEEEcCCCCcEEE-EEEE-cCCceEeccCCceeEccCCCeeEEEEeeeecccCceEE
Confidence 8899999987776552 2 68889998874322 2211 11221 2345899999865432 2 222 4554
Q ss_pred EECC-------CCcEEEeccCCCCeeEE-EEeCCCCEEE
Q 003236 795 WNMT-------ENKTLTLSAHDKLVSSL-AASTVNGMVA 825 (837)
Q Consensus 795 wDl~-------s~~~~~l~~h~~~V~sl-a~spdg~~La 825 (837)
+++. .+....+....-.|..+ +|+.+++.|+
T Consensus 337 ~~~~~~~~~~~~~~~~~LT~G~w~V~~i~~~d~~~~~vy 375 (465)
T d1xfda1 337 ITVSSSQPNSSNDNIQSITSGDWDVTKILAYDEKGNKIY 375 (465)
T ss_dssp EEEECSSCCSSSCCCCBSCCSSSCEEEEEEEETTTTEEE
T ss_pred EEeccccccCCCceeEEeccCCceEEEEEEEcCCCCEEE
Confidence 4332 12222333444456655 5787776554
|
| >d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Regucalcin species: Agrobacterium tumefaciens [TaxId: 358]
Probab=98.71 E-value=1.8e-05 Score=82.03 Aligned_cols=222 Identities=14% Similarity=0.108 Sum_probs=152.3
Q ss_pred EEEEEcCC-CCEEEEEECCCcEEEEeCCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeEEee
Q 003236 559 ESCHFSPD-GKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFT 637 (837)
Q Consensus 559 ~sl~fSpd-g~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~~~~~~~~~~ 637 (837)
.+..|++. +.++.+--..+.|..||.++++.. .+ .....+.++++.+++.++++ +.+ -|.++|..+++.......
T Consensus 21 Egp~wd~~~~~l~wvDi~~~~I~r~d~~~g~~~-~~-~~~~~~~~i~~~~dg~l~va-~~~-gl~~~d~~tg~~~~l~~~ 96 (295)
T d2ghsa1 21 EGPTFDPASGTAWWFNILERELHELHLASGRKT-VH-ALPFMGSALAKISDSKQLIA-SDD-GLFLRDTATGVLTLHAEL 96 (295)
T ss_dssp EEEEEETTTTEEEEEEGGGTEEEEEETTTTEEE-EE-ECSSCEEEEEEEETTEEEEE-ETT-EEEEEETTTCCEEEEECS
T ss_pred eCCeEECCCCEEEEEECCCCEEEEEECCCCeEE-EE-ECCCCcEEEEEecCCCEEEE-EeC-ccEEeecccceeeEEeee
Confidence 45678874 445555446789999999887654 23 23457889999998876665 455 588999998764222111
Q ss_pred c---cccceEEEEEcCCCCeEEEEEeC---CCcEEEEECCCCeeeeEEecCCCeeEEEEecCCCEEEEEEc-CCeEEEEE
Q 003236 638 G---HSTTVMSLDFHPSKEDLLCSCDN---NSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAI-ENYISILD 710 (837)
Q Consensus 638 ~---h~~~V~sl~fspdg~~llasgs~---Dg~I~vwDl~t~~~i~~~~~~~~i~sl~~sp~g~~llags~-dg~I~iwD 710 (837)
. ....++.+.+.|+|...+.+... .+.-.+|.+..++.............++|+++++.++.+.. .+.|..|+
T Consensus 97 ~~~~~~~~~nd~~vd~~G~iw~~~~~~~~~~~~g~l~~~~~g~~~~~~~~~~~~Ng~~~s~d~~~l~~~dt~~~~I~~~~ 176 (295)
T d2ghsa1 97 ESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVAKGKVTKLFADISIPNSICFSPDGTTGYFVDTKVNRLMRVP 176 (295)
T ss_dssp STTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEETTEEEEEEEEESSEEEEEECTTSCEEEEEETTTCEEEEEE
T ss_pred ecCCCcccceeeEECCCCCEEEEeccccccccceeEeeecCCcEEEEeeccCCcceeeecCCCceEEEeecccceeeEee
Confidence 1 12357889999998755533322 23456777777776666655566788999999998777665 57899988
Q ss_pred CCC------C--eEEEEEcCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEe-CCC
Q 003236 711 VET------Q--VCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFH-PTF 780 (837)
Q Consensus 711 l~s------~--~~~~~l~~h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fs-pdg 780 (837)
+.. + .....+.+.......++++.+|++.++.. .+.|.+||-. + +.+..+......+++|+|- ++.
T Consensus 177 ~d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~~GnlWva~~~~g~V~~~dp~-G---~~~~~i~lP~~~~T~~~FGG~d~ 252 (295)
T d2ghsa1 177 LDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDTD-G---NHIARYEVPGKQTTCPAFIGPDA 252 (295)
T ss_dssp BCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECTT-C---CEEEEEECSCSBEEEEEEESTTS
T ss_pred ecccccccccceEEEeccCcccccccceEEcCCCCEEeeeeCCCceEEecCC-C---cEeeEecCCCCceEEEEEeCCCC
Confidence 742 1 12223334556688999999999888776 7789999954 4 5666666666779999996 677
Q ss_pred CEEEEEEc
Q 003236 781 PSLLVIGC 788 (837)
Q Consensus 781 ~~L~sgs~ 788 (837)
+.|++.+.
T Consensus 253 ~~LyvTta 260 (295)
T d2ghsa1 253 SRLLVTSA 260 (295)
T ss_dssp CEEEEEEB
T ss_pred CEEEEEEC
Confidence 77776654
|
| >d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Tricorn protease N-terminal domain family: Tricorn protease N-terminal domain domain: Tricorn protease N-terminal domain species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=98.60 E-value=3.1e-06 Score=85.45 Aligned_cols=231 Identities=12% Similarity=0.082 Sum_probs=133.3
Q ss_pred EEcCC--CCEEEEEECCCcEEEEeCCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeC-C-----CeEEEEEcCCCCcee
Q 003236 562 HFSPD--GKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA-D-----RTVRVWDTENPDYSL 633 (837)
Q Consensus 562 ~fSpd--g~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~-D-----g~I~IWDl~~~~~~~ 633 (837)
..+|| |+.+|..+ ++.|.+.|+.+++.. .+..+.+.+...+|+|||+.||.... + ..|.+++..++..
T Consensus 5 ~~sPdi~G~~v~f~~-~~dl~~~d~~~g~~~-~Lt~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~g~~-- 80 (281)
T d1k32a2 5 LLNPDIHGDRIIFVC-CDDLWEHDLKSGSTR-KIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEI-- 80 (281)
T ss_dssp CEEEEEETTEEEEEE-TTEEEEEETTTCCEE-EEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTEE--
T ss_pred ccCCCCCCCEEEEEe-CCcEEEEECCCCCEE-EEecCCCcccCEEECCCCCEEEEEEeeCCCCCceEEEEEEecCCce--
Confidence 46788 99988765 567999999988765 45567778999999999999987643 2 2477777776543
Q ss_pred EEee-------ccccceEEEEEcCCCCeEEEEEeCC-----CcEEEEECCCCeeeeEEecCCCeeEEEEecCCCEEEEEE
Q 003236 634 RTFT-------GHSTTVMSLDFHPSKEDLLCSCDNN-----SEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAA 701 (837)
Q Consensus 634 ~~~~-------~h~~~V~sl~fspdg~~llasgs~D-----g~I~vwDl~t~~~i~~~~~~~~i~sl~~sp~g~~llags 701 (837)
..+. ........+.|+|++..++++...+ ..+...+...+...... ...... .+.+++..++...
T Consensus 81 ~~lt~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~-~~~~~~~~~~~~~ 157 (281)
T d1k32a2 81 KRITYFSGKSTGRRMFTDVAGFDPDGNLIISTDAMQPFSSMTCLYRVENDGINFVPLN--LGPATH-ILFADGRRVIGRN 157 (281)
T ss_dssp EECCCCCEEEETTEECSEEEEECTTCCEEEEECTTSSSTTCCEEEEEEGGGTEEEECC--SCSCSE-EEEETTEEEEEES
T ss_pred EEeeecCCCccCccccccccccCCCCCEEEEEEccCCCccceeeeeecCCCceeEEec--CCccce-eeecCCCeEEEee
Confidence 2222 1223456789999998777654322 23455555544433221 122223 3444444444332
Q ss_pred c-CC-----------eEEEEECCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEeCC--eEEEEEcCCCCCceeEEEeecC
Q 003236 702 I-EN-----------YISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVSDE--LVRVWSIGSGSKGECIHELSCT 767 (837)
Q Consensus 702 ~-dg-----------~I~iwDl~s~~~~~~l~~h~~~V~sl~~spdg~~LasgsDg--~I~IwDl~s~~~~~~i~~~~~~ 767 (837)
. +. ...++........... .+........++++..+.....++ .|.++|+.+... + .+...
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~-~---~lt~~ 232 (281)
T d1k32a2 158 TFELPHWKGYRGGTRGKIWIEVNSGAFKKIV-DMSTHVSSPVIVGHRIYFITDIDGFGQIYSTDLDGKDL-R---KHTSF 232 (281)
T ss_dssp CSCCTTSTTCCSTTCCEEEEEEETTEEEEEE-CCSSCCEEEEEETTEEEEEECTTSSCEEEEEETTSCSC-E---ECCCC
T ss_pred ccccceeeeeccCCcceeeeeccccceeecc-CCccccceeeeeccccceecccccccceEEEeCCCCce-E---EeecC
Confidence 2 11 1222222222222222 233445556666553322222233 688888877632 2 22211
Q ss_pred CCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEEEec
Q 003236 768 GNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLS 806 (837)
Q Consensus 768 ~~~I~sv~fspdg~~L~sgs~dg~I~IwDl~s~~~~~l~ 806 (837)
.......|+|||+.|+.. .++.|+++|+.+++...+.
T Consensus 233 -~~~~~~~~SpDG~~I~f~-~~~~l~~~d~~~g~~~~i~ 269 (281)
T d1k32a2 233 -TDYYPRHLNTDGRRILFS-KGGSIYIFNPDTEKIEKIE 269 (281)
T ss_dssp -CSSCEEEEEESSSCEEEE-ETTEEEEECTTTCCEEECC
T ss_pred -CCcccccCcCCCCEEEEE-eCCEEEEEECCCCCEEEec
Confidence 222334689999988764 4678999999999877553
|
| >d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Regucalcin species: Agrobacterium tumefaciens [TaxId: 358]
Probab=98.58 E-value=4.2e-05 Score=79.13 Aligned_cols=218 Identities=9% Similarity=0.015 Sum_probs=143.2
Q ss_pred EEEEEcCCCCEEE-EEeCCCeEEEEEcCCCCceeEEeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeeEE
Q 003236 601 TDVRFSPSLSRLA-TSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVF 679 (837)
Q Consensus 601 ~~l~fspdg~~La-tgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~ 679 (837)
.+..|++....|+ +=-..+.|..||..++... .+. ....+.++++.+++. +++++ . ..|.++|..+++.....
T Consensus 21 Egp~wd~~~~~l~wvDi~~~~I~r~d~~~g~~~--~~~-~~~~~~~i~~~~dg~-l~va~-~-~gl~~~d~~tg~~~~l~ 94 (295)
T d2ghsa1 21 EGPTFDPASGTAWWFNILERELHELHLASGRKT--VHA-LPFMGSALAKISDSK-QLIAS-D-DGLFLRDTATGVLTLHA 94 (295)
T ss_dssp EEEEEETTTTEEEEEEGGGTEEEEEETTTTEEE--EEE-CSSCEEEEEEEETTE-EEEEE-T-TEEEEEETTTCCEEEEE
T ss_pred eCCeEECCCCEEEEEECCCCEEEEEECCCCeEE--EEE-CCCCcEEEEEecCCC-EEEEE-e-CccEEeecccceeeEEe
Confidence 3566877544444 4345788999999886532 222 345688999988865 44443 3 45999999998765544
Q ss_pred ecC-----CCeeEEEEecCCCEEEEEEcC----CeEEEEECCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEe--CCeEE
Q 003236 680 KCQ-----SGATQMRFQPRLGRILAAAIE----NYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS--DELVR 748 (837)
Q Consensus 680 ~~~-----~~i~sl~~sp~g~~llags~d----g~I~iwDl~s~~~~~~l~~h~~~V~sl~~spdg~~Lasgs--Dg~I~ 748 (837)
... ..++.+.+.++|+..++.... +.-.+|.+..++....+.. -...+.++|+++++.++.+. .+.|.
T Consensus 95 ~~~~~~~~~~~nd~~vd~~G~iw~~~~~~~~~~~~g~l~~~~~g~~~~~~~~-~~~~Ng~~~s~d~~~l~~~dt~~~~I~ 173 (295)
T d2ghsa1 95 ELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVAKGKVTKLFAD-ISIPNSICFSPDGTTGYFVDTKVNRLM 173 (295)
T ss_dssp CSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEETTEEEEEEEE-ESSEEEEEECTTSCEEEEEETTTCEEE
T ss_pred eeecCCCcccceeeEECCCCCEEEEeccccccccceeEeeecCCcEEEEeec-cCCcceeeecCCCceEEEeecccceee
Confidence 332 236788899998876665432 3455666666655544432 34567899999999776665 67899
Q ss_pred EEEcCCCCC-----ceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE-EeccCCCCeeEEEEe-CCC
Q 003236 749 VWSIGSGSK-----GECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAAS-TVN 821 (837)
Q Consensus 749 IwDl~s~~~-----~~~i~~~~~~~~~I~sv~fspdg~~L~sgs~dg~I~IwDl~s~~~~-~l~~h~~~V~sla~s-pdg 821 (837)
.|++..... ................+++..+|...++.-..+.|..||. +++.+ .+.-....+++++|- +|.
T Consensus 174 ~~~~d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~~GnlWva~~~~g~V~~~dp-~G~~~~~i~lP~~~~T~~~FGG~d~ 252 (295)
T d2ghsa1 174 RVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDT-DGNHIARYEVPGKQTTCPAFIGPDA 252 (295)
T ss_dssp EEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECT-TCCEEEEEECSCSBEEEEEEESTTS
T ss_pred EeeecccccccccceEEEeccCcccccccceEEcCCCCEEeeeeCCCceEEecC-CCcEeeEecCCCCceEEEEEeCCCC
Confidence 998753211 1222233344566788999999986666667789999996 45555 444444679999996 565
Q ss_pred CEEEE
Q 003236 822 GMVAS 826 (837)
Q Consensus 822 ~~LaS 826 (837)
+.|+.
T Consensus 253 ~~Lyv 257 (295)
T d2ghsa1 253 SRLLV 257 (295)
T ss_dssp CEEEE
T ss_pred CEEEE
Confidence 54443
|
| >d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Tricorn protease N-terminal domain family: Tricorn protease N-terminal domain domain: Tricorn protease N-terminal domain species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=98.39 E-value=1.7e-05 Score=79.83 Aligned_cols=220 Identities=9% Similarity=0.069 Sum_probs=130.3
Q ss_pred EEcCC--CCEEEEEeCCCeEEEEEcCCCCceeEEeeccccceEEEEEcCCCCeEEEEEeCCC-----cEEEEECCCCeee
Q 003236 604 RFSPS--LSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNS-----EIRYWSINNGSCA 676 (837)
Q Consensus 604 ~fspd--g~~Latgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg-----~I~vwDl~t~~~i 676 (837)
..+|| |+.++..+ ++.|.+.|+.+++ .+.+..+...+...+|+|||+.++++...++ .|.+++..+++..
T Consensus 5 ~~sPdi~G~~v~f~~-~~dl~~~d~~~g~--~~~Lt~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~g~~~ 81 (281)
T d1k32a2 5 LLNPDIHGDRIIFVC-CDDLWEHDLKSGS--TRKIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEIK 81 (281)
T ss_dssp CEEEEEETTEEEEEE-TTEEEEEETTTCC--EEEEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTEEE
T ss_pred ccCCCCCCCEEEEEe-CCcEEEEECCCCC--EEEEecCCCcccCEEECCCCCEEEEEEeeCCCCCceEEEEEEecCCceE
Confidence 35688 88888765 4578888998765 4566667788899999999998887765443 4788888888765
Q ss_pred eEEecC-------CCeeEEEEecCCCEEEEEEcC------CeEEEEECCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEe
Q 003236 677 GVFKCQ-------SGATQMRFQPRLGRILAAAIE------NYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS 743 (837)
Q Consensus 677 ~~~~~~-------~~i~sl~~sp~g~~llags~d------g~I~iwDl~s~~~~~~l~~h~~~V~sl~~spdg~~Lasgs 743 (837)
...... .......|+|+++.|+..... ..+...+...+..... +......+.+.+.+.+++...
T Consensus 82 ~lt~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~ 158 (281)
T d1k32a2 82 RITYFSGKSTGRRMFTDVAGFDPDGNLIISTDAMQPFSSMTCLYRVENDGINFVPL---NLGPATHILFADGRRVIGRNT 158 (281)
T ss_dssp ECCCCCEEEETTEECSEEEEECTTCCEEEEECTTSSSTTCCEEEEEEGGGTEEEEC---CSCSCSEEEEETTEEEEEESC
T ss_pred EeeecCCCccCccccccccccCCCCCEEEEEEccCCCccceeeeeecCCCceeEEe---cCCccceeeecCCCeEEEeec
Confidence 543221 235678899999988876542 2455666665554332 222222333333333333322
Q ss_pred -CC-----------eEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEE-cCC--eEEEEECCCCcEEEeccC
Q 003236 744 -DE-----------LVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIG-CYE--TLELWNMTENKTLTLSAH 808 (837)
Q Consensus 744 -Dg-----------~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fspdg~~L~sgs-~dg--~I~IwDl~s~~~~~l~~h 808 (837)
+. ...++..... ................++++ .++... .++ .|+++|+.+++...+..+
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~d~~g~~~~~lt~~ 232 (281)
T d1k32a2 159 FELPHWKGYRGGTRGKIWIEVNSG----AFKKIVDMSTHVSSPVIVGH--RIYFITDIDGFGQIYSTDLDGKDLRKHTSF 232 (281)
T ss_dssp SCCTTSTTCCSTTCCEEEEEEETT----EEEEEECCSSCCEEEEEETT--EEEEEECTTSSCEEEEEETTSCSCEECCCC
T ss_pred cccceeeeeccCCcceeeeecccc----ceeeccCCccccceeeeecc--ccceecccccccceEEEeCCCCceEEeecC
Confidence 11 1111111111 11122223334445556655 333333 222 788999988877665443
Q ss_pred CCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 003236 809 DKLVSSLAASTVNGMVASASHDKCVKIWK 837 (837)
Q Consensus 809 ~~~V~sla~spdg~~LaSgs~DG~I~IWd 837 (837)
.. .....|+|||+.|+.. .++.|+++|
T Consensus 233 ~~-~~~~~~SpDG~~I~f~-~~~~l~~~d 259 (281)
T d1k32a2 233 TD-YYPRHLNTDGRRILFS-KGGSIYIFN 259 (281)
T ss_dssp CS-SCEEEEEESSSCEEEE-ETTEEEEEC
T ss_pred CC-cccccCcCCCCEEEEE-eCCEEEEEE
Confidence 32 2334689999988764 467788775
|
| >d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Paracoccus denitrificans [TaxId: 266]
Probab=98.33 E-value=3.1e-05 Score=82.67 Aligned_cols=256 Identities=9% Similarity=0.025 Sum_probs=158.2
Q ss_pred EEEEECCCcEEEEeCCCCeEEEEeccCC---------------------------------------CCe--EEEEEcC-
Q 003236 570 LATGGHDKKAVLWCTESFTVKSTLEEHT---------------------------------------QWI--TDVRFSP- 607 (837)
Q Consensus 570 Lasgs~Dg~I~VWd~~t~~~~~~l~~h~---------------------------------------~~I--~~l~fsp- 607 (837)
|.+|+..|.|+|+-+.+++.+..+...+ +.. -.+.+..
T Consensus 16 f~SgG~sG~v~v~G~PSmR~l~~ipvF~~~~~~G~G~~~es~~il~~~~~~~t~~~l~~~g~~~~~~GD~HHP~~S~TdG 95 (459)
T d1fwxa2 16 FWSSGQSGEMRILGIPSMRELMRVPVFNRCSATGWGQTNESVRIHERTMSERTKKFLAANGKRIHDNGDLHHVHMSFTEG 95 (459)
T ss_dssp EECCBTTCEEEEEEETTCCEEEEEESSSCCTTTCTTTBHHHHHHHHTTCC--------------CCCCCBCCEEEEEETT
T ss_pred EeeCCccceEEEEecCCcceEEEeeeecCCCCcccCcchhHHHHhhcccChhhhhhhhccCcccccCCCcCCCcccccCC
Confidence 5678888999999888887776653100 011 1344433
Q ss_pred --CCCEEEEEe-CCCeEEEEEcCCCCceeEEeeccccceEEEEEcC--CCCeEEEEEeCC------------------Cc
Q 003236 608 --SLSRLATSS-ADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHP--SKEDLLCSCDNN------------------SE 664 (837)
Q Consensus 608 --dg~~Latgs-~Dg~I~IWDl~~~~~~~~~~~~h~~~V~sl~fsp--dg~~llasgs~D------------------g~ 664 (837)
||++|++.. .+.+|.+.|+++-+............+..+...+ +-.+++ ..+.+ +.
T Consensus 96 tyDGrylFVNDkan~RVAvIdl~~fkt~kIi~iPn~~~~HG~r~~~~p~T~YV~-~~~e~~vP~pndg~~l~d~~~y~~~ 174 (459)
T d1fwxa2 96 KYDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVF-CNGEDETPLVNDGTNMEDVANYVNV 174 (459)
T ss_dssp EEEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEE-EEECSCEESSCSSSSTTCGG-EEEE
T ss_pred ccceeEEEEEcCCCceEEEEECcceeeeEEEecCCCCCCceeecccCCCeEEEE-ccCccccccCCCCccccchhhcceE
Confidence 688887776 5789999999986542222223345566666654 333333 33321 34
Q ss_pred EEEEECCCCeeeeEEecCCCeeEEEEecCCCEEEEEEcCC---------------eE-----------------------
Q 003236 665 IRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIEN---------------YI----------------------- 706 (837)
Q Consensus 665 I~vwDl~t~~~i~~~~~~~~i~sl~~sp~g~~llags~dg---------------~I----------------------- 706 (837)
+.++|..+.+....+........+.++++|+++++.+.+. .+
T Consensus 175 ~t~ID~~tm~V~~QV~V~g~ld~~~~s~dGK~af~TsyNSE~g~~l~e~ta~e~D~i~V~n~~rie~av~~Gk~~eingV 254 (459)
T d1fwxa2 175 FTAVDADKWEVAWQVLVSGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGV 254 (459)
T ss_dssp EEEEETTTTEEEEEEEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTE
T ss_pred EEEEecCCceEEEEeeeCCChhccccCCCCCEEEEEeccccCCcchhhcccccceEEEEechHHhHHhhhcCCcEEeCCc
Confidence 6789999999999988888889999999999999887531 23
Q ss_pred EEEECCCC---eEEEEEcCCCCCEEEEEEcCCCCEEEEEe--CCeEEEEEcCCC--------CCceeEEEeecCCCceEE
Q 003236 707 SILDVETQ---VCRLKLQGHKNQVHSVCWNTSGEYLASVS--DELVRVWSIGSG--------SKGECIHELSCTGNKFHS 773 (837)
Q Consensus 707 ~iwDl~s~---~~~~~l~~h~~~V~sl~~spdg~~Lasgs--Dg~I~IwDl~s~--------~~~~~i~~~~~~~~~I~s 773 (837)
.+.|.++. ..+..+. -....+.+.++|||+++++++ +.++.|+|++.- ....++..-...+-.-..
T Consensus 255 ~VVD~~~~~~~~v~~yIP-VpKsPHGV~vSPDGKyi~VaGKLs~tVSViD~~Ki~~~~~~~~~~~~~~~~e~elglgPLh 333 (459)
T d1fwxa2 255 KVVDGRKEASSLFTRYIP-IANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELGLGPLH 333 (459)
T ss_dssp EEEECSGG--CSSEEEEE-EESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCC-GGGGEEECCBCCSCEEE
T ss_pred eeecccccCCcceeEEEe-cCCCCCceEECCCCCEEEEeCCcCCcEEEEEehhhhhhhcccCCccccEEeecccCcCccc
Confidence 33343321 1111111 123356789999999999988 889999999631 112233333333445566
Q ss_pred EEEeCCCCEEEEEEcCCeEEEEECCCC----------cEE-EeccCCCCeeEE------EEeCCCCEEEEEE
Q 003236 774 CVFHPTFPSLLVIGCYETLELWNMTEN----------KTL-TLSAHDKLVSSL------AASTVNGMVASAS 828 (837)
Q Consensus 774 v~fspdg~~L~sgs~dg~I~IwDl~s~----------~~~-~l~~h~~~V~sl------a~spdg~~LaSgs 828 (837)
.+|+..|....+.--|..|.-|++... .++ ++.-|-. +-.+ ...|+|++|++.+
T Consensus 334 t~fd~~g~aytslfids~v~kw~~~~~~~~~~~~~~~~v~~k~~v~y~-~gh~~~~~g~t~~~dgk~l~~~n 404 (459)
T d1fwxa2 334 TAFDGRGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQ-PGHLKTVMGETLDATNDWLVCLS 404 (459)
T ss_dssp EEECTTSEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSC-EEEEEETTTTSTTCCSSEEEEEE
T ss_pred cccCCCceEEEEeeccceEEEEecchhhhhhccccCCcceeccccccC-CCCCccCcCCcCCCCCCEEEEec
Confidence 788888853333345889999998432 233 3333321 1222 2357888888875
|
| >d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Nidogen species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.31 E-value=0.00048 Score=69.70 Aligned_cols=245 Identities=8% Similarity=-0.010 Sum_probs=157.4
Q ss_pred CEEEEEECCCcEEEEeCCCCe-----EEEEeccCCCCeEEEEEcCCCCEEEEEe-CCCeEEEEEcCCCCceeEEeecccc
Q 003236 568 KLLATGGHDKKAVLWCTESFT-----VKSTLEEHTQWITDVRFSPSLSRLATSS-ADRTVRVWDTENPDYSLRTFTGHST 641 (837)
Q Consensus 568 ~~Lasgs~Dg~I~VWd~~t~~-----~~~~l~~h~~~I~~l~fspdg~~Latgs-~Dg~I~IWDl~~~~~~~~~~~~h~~ 641 (837)
.+|+.+.. +.|+-.+++... ....+..+...|..|+|....+.|+.+. .++.|+..+++.... .........
T Consensus 2 ~fLl~s~~-~~I~~~~ld~~~~~~~~~~~~~~~~~~~~~~ld~D~~~~~iywsd~~~~~I~~~~l~g~~~-~~v~~~~~~ 79 (263)
T d1npea_ 2 THLLFAQT-GKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEP-TTIIRQDLG 79 (263)
T ss_dssp EEEEEEEE-EEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCC-EEEECTTCC
T ss_pred CEEEEeCC-CeEEEEECCCccccccccccccccCCCcEEEEEEEeCCCEEEEEECCCCeEEEEEcccCCc-EEEEEeccc
Confidence 34444433 467666665332 1222333445688899998777766654 567899988876543 333333345
Q ss_pred ceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeeEEec-CCCeeEEEEecCCCEEEEEEcC---CeEEEEECCCCeEE
Q 003236 642 TVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAIE---NYISILDVETQVCR 717 (837)
Q Consensus 642 ~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~-~~~i~sl~~sp~g~~llags~d---g~I~iwDl~s~~~~ 717 (837)
.+.+++++.-++.+.++-...+.|.+.++....+...+.. ...+..+++.|..++++..... ..|...++......
T Consensus 80 ~p~~iAvD~~~~~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~dG~~~~ 159 (263)
T d1npea_ 80 SPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRR 159 (263)
T ss_dssp CEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCE
T ss_pred cccEEEEeccCCeEEEeccCCCEEEEEecCCceEEEEecccccCCcEEEEecccCcEEEeecCCCCcEEEEecCCCCCce
Confidence 6889999877777877777788999999986654433333 3568899999998988876643 24666666654433
Q ss_pred EEEcCCCCCEEEEEEcCCCCEEEEEe--CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEE-cCCeEEE
Q 003236 718 LKLQGHKNQVHSVCWNTSGEYLASVS--DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIG-CYETLEL 794 (837)
Q Consensus 718 ~~l~~h~~~V~sl~~spdg~~Lasgs--Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fspdg~~L~sgs-~dg~I~I 794 (837)
......-....+|++++.+..|+.+. .+.|...|+... .....+... .....+++. +.+|+... ..+.|..
T Consensus 160 ~i~~~~~~~P~glaiD~~~~~lYw~d~~~~~I~~~~~~g~---~~~~v~~~~-~~P~~lav~--~~~lYwtd~~~~~I~~ 233 (263)
T d1npea_ 160 ILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQP---GRRKVLEGL-QYPFAVTSY--GKNLYYTDWKTNSVIA 233 (263)
T ss_dssp EEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEE---EEEEEEECC-CSEEEEEEE--TTEEEEEETTTTEEEE
T ss_pred eeeeecccccceEEEeecCcEEEEEeCCCCEEEEEECCCC---CeEEEECCC-CCcEEEEEE--CCEEEEEECCCCEEEE
Confidence 33333445678999998888777765 678999998754 222223332 234567775 45677666 4568999
Q ss_pred EECCCCcEEEec--cCCCCeeEEEEeCC
Q 003236 795 WNMTENKTLTLS--AHDKLVSSLAASTV 820 (837)
Q Consensus 795 wDl~s~~~~~l~--~h~~~V~sla~spd 820 (837)
.|..+++..... ........|++.++
T Consensus 234 ~~~~~g~~~~~~~~~~~~~~~gi~v~~~ 261 (263)
T d1npea_ 234 MDLAISKEMDTFHPHKQTRLYGITIALS 261 (263)
T ss_dssp EETTTTEEEEEECCSSCCCCCCEEEECS
T ss_pred EECCCCccceEECCCCCCCcceEEEeCC
Confidence 999988876433 33344556666543
|
| >d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Low density lipoprotein (LDL) receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.20 E-value=0.0036 Score=63.03 Aligned_cols=230 Identities=9% Similarity=-0.025 Sum_probs=150.0
Q ss_pred EEEEEECCCcEEEEeCCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEe-CCCeEEEEEcCCCCc--ee-EEeeccccceE
Q 003236 569 LLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSS-ADRTVRVWDTENPDY--SL-RTFTGHSTTVM 644 (837)
Q Consensus 569 ~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs-~Dg~I~IWDl~~~~~--~~-~~~~~h~~~V~ 644 (837)
+|+.+.. ..|+..++++......+. ....+..++|++..+.|+-.. .++.|...++..... .. .........+.
T Consensus 3 fLl~s~~-~~I~~~~l~~~~~~~~~~-~~~~~~~id~d~~~~~lYw~D~~~~~I~~~~l~~~~~~~~~~~~~~~~~~~p~ 80 (266)
T d1ijqa1 3 YLFFTNR-HEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPD 80 (266)
T ss_dssp EEEEECB-SSEEEEETTSCCCEEEEC-SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCC
T ss_pred EEEEECC-CeEEEEECCCCcceeeeC-CCCceEEEEEEeCCCEEEEEECCCCEEEEEEecCCCCCcceEEEEeCCCCCcc
Confidence 3444433 458888888765544444 445678999998777776664 466777777653221 11 22233335677
Q ss_pred EEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeeEEec-CCCeeEEEEecCCCEEEEEEc--CCeEEEEECCCCeEEEEEc
Q 003236 645 SLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAI--ENYISILDVETQVCRLKLQ 721 (837)
Q Consensus 645 sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~-~~~i~sl~~sp~g~~llags~--dg~I~iwDl~s~~~~~~l~ 721 (837)
++++.+.+..+.++....+.|.+.++........... ......++++|..++++.... .+.|...++..........
T Consensus 81 glAvD~~~~~lY~~d~~~~~I~v~~~~g~~~~~~~~~~~~~P~~l~vd~~~g~ly~~~~~~~~~I~r~~~dGs~~~~l~~ 160 (266)
T d1ijqa1 81 GLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVT 160 (266)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEEC
T ss_pred eEEEeeccceEEEEecCCCEEEeEecCCceEEEEEcCCCCCcceEEEEcccCeEEEeccCCCcceeEeccCCCceecccc
Confidence 8999887888888877888999999987665544443 356889999998888887764 3567778877554444444
Q ss_pred CCCCCEEEEEEcCCCCEEEEEe--CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEE-cCCeEEEEECC
Q 003236 722 GHKNQVHSVCWNTSGEYLASVS--DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIG-CYETLELWNMT 798 (837)
Q Consensus 722 ~h~~~V~sl~~spdg~~Lasgs--Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fspdg~~L~sgs-~dg~I~IwDl~ 798 (837)
..-...+++++++.+..|+.+. .+.|...++..... ..+............+++. +.+|+.+. .++.|+..+..
T Consensus 161 ~~~~~p~gl~iD~~~~~lYw~d~~~~~I~~~~~dG~~~-~~~~~~~~~~~~p~~lav~--~~~ly~td~~~~~I~~~~~~ 237 (266)
T d1ijqa1 161 ENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNR-KTILEDEKRLAHPFSLAVF--EDKVFWTDIINEAIFSANRL 237 (266)
T ss_dssp SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEEECTTTTSSEEEEEEE--TTEEEEEETTTTEEEEEETT
T ss_pred cccceeeEEEeeccccEEEEecCCcCEEEEEECCCCCE-EEEEeCCCcccccEEEEEE--CCEEEEEECCCCeEEEEECC
Confidence 4446788999999888777776 67899999876532 2222222223345667766 34666665 45688888877
Q ss_pred CCcEE
Q 003236 799 ENKTL 803 (837)
Q Consensus 799 s~~~~ 803 (837)
++...
T Consensus 238 ~g~~~ 242 (266)
T d1ijqa1 238 TGSDV 242 (266)
T ss_dssp TCCCC
T ss_pred CCcce
Confidence 76544
|
| >d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Galactose oxidase, central domain family: Galactose oxidase, central domain domain: Galactose oxidase, central domain species: Fungi (Fusarium sp.) [TaxId: 29916]
Probab=98.14 E-value=0.00037 Score=73.62 Aligned_cols=272 Identities=9% Similarity=0.036 Sum_probs=150.3
Q ss_pred CeEEEEEcCCCCEEEEEECCC-----------cEEEEeCCCCeEEE--E-eccCCCCeEEEEEcCCCCEEEEEeCC-CeE
Q 003236 557 KVESCHFSPDGKLLATGGHDK-----------KAVLWCTESFTVKS--T-LEEHTQWITDVRFSPSLSRLATSSAD-RTV 621 (837)
Q Consensus 557 ~V~sl~fSpdg~~Lasgs~Dg-----------~I~VWd~~t~~~~~--~-l~~h~~~I~~l~fspdg~~Latgs~D-g~I 621 (837)
++...+...+|++++.|+.+. .+.+||..+++... . ...|.......++.+++++++.|+.+ ..+
T Consensus 21 ~~~~a~~~~~gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~i~v~Gg~~~~~~ 100 (387)
T d1k3ia3 21 PAAAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKT 100 (387)
T ss_dssp CSEEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCE
T ss_pred ccEEEEEeeCCEEEEEEeecCcccCCCCCceeEEEEEECCCCcEeecCCCCCCcccceeEEEEecCCcEEEeecCCCcce
Confidence 344555567899988888531 37799998764321 1 22344445567889999999988765 589
Q ss_pred EEEEcCCCCceeEEeeccccceEEEEEcCCCCeEEEEEeCC------CcEEEEECCCCeeeeEEec--------------
Q 003236 622 RVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN------SEIRYWSINNGSCAGVFKC-------------- 681 (837)
Q Consensus 622 ~IWDl~~~~~~~~~~~~h~~~V~sl~fspdg~~llasgs~D------g~I~vwDl~t~~~i~~~~~-------------- 681 (837)
.+||..+..............-.+.+..+++..++ .++.+ ..+.+||+.+.+-...-..
T Consensus 101 ~~yd~~~~~w~~~~~~~~~r~~~~~~~~~dG~v~v-~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~ 179 (387)
T d1k3ia3 101 SLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFT-IGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLY 179 (387)
T ss_dssp EEEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEE-ECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCTTGGG
T ss_pred eEecCccCcccccccccccccccceeeecCCceee-eccccccccccceeeeecCCCCceeecCCCccccccccccccee
Confidence 99999876542211111222334566777876444 55422 3689999988754321110
Q ss_pred -CCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEcC------CCC--CEEEEEE-cCCCCEEEEEe--CC----
Q 003236 682 -QSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQG------HKN--QVHSVCW-NTSGEYLASVS--DE---- 745 (837)
Q Consensus 682 -~~~i~sl~~sp~g~~llags~dg~I~iwDl~s~~~~~~l~~------h~~--~V~sl~~-spdg~~Lasgs--Dg---- 745 (837)
......+...+++..++.+...+.+.++|..+......... +.. .-.++.+ ..++++++.++ ++
T Consensus 180 ~~~~~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~v~GG~~~~~~~~ 259 (387)
T d1k3ia3 180 RSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSD 259 (387)
T ss_dssp TTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSSSB
T ss_pred eccceeEEEEeCCCCEEEecCcCCcEEecCcccCcEeeccccccCcccCcccccccEEEeeccCCceEEEEeccCCCCCc
Confidence 00111223344566666666677778888877644322110 111 1122223 23566666654 21
Q ss_pred ---eEEEEEcCCCCCceeEEE-ee--cCCCceEEEEEeCCCCEEEEEEcCC-----------eEEEEECCCCcEEEeccC
Q 003236 746 ---LVRVWSIGSGSKGECIHE-LS--CTGNKFHSCVFHPTFPSLLVIGCYE-----------TLELWNMTENKTLTLSAH 808 (837)
Q Consensus 746 ---~I~IwDl~s~~~~~~i~~-~~--~~~~~I~sv~fspdg~~L~sgs~dg-----------~I~IwDl~s~~~~~l~~h 808 (837)
...++++........... .. .......+.+..++++.+++|+.+. .+.+||..+.+...+...
T Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~dg~i~v~GG~~~~~~~~~~~~~~~ve~Ydp~~~~W~~~~~~ 339 (387)
T d1k3ia3 260 ATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQDTFYKQNPN 339 (387)
T ss_dssp CCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEEGGGTEEEECCCC
T ss_pred ccceeecccccccccCCCceeeccccccccccceeeeccCCeEEEECCcccCccCCCCcEeceEEEEECCCCeEEECCCC
Confidence 334444433221111111 11 1122234566678999888887531 578999988876544322
Q ss_pred CCC--e-eEEEEeCCCCEEEEEEC
Q 003236 809 DKL--V-SSLAASTVNGMVASASH 829 (837)
Q Consensus 809 ~~~--V-~sla~spdg~~LaSgs~ 829 (837)
..+ - ....+.+||++|+.|+.
T Consensus 340 ~~~R~~Hs~a~l~~dG~v~v~GG~ 363 (387)
T d1k3ia3 340 SIVRVYHSISLLLPDGRVFNGGGG 363 (387)
T ss_dssp SSCCCTTEEEEECTTSCEEEEECC
T ss_pred CCcccceEEEEECCCCEEEEEeCC
Confidence 111 1 23345789999999884
|
| >d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Nidogen species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.06 E-value=0.0026 Score=64.02 Aligned_cols=219 Identities=7% Similarity=-0.010 Sum_probs=141.2
Q ss_pred CEEEEEeCCCeEEEEEcCCCCc----eeEEeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeeEEec-CCC
Q 003236 610 SRLATSSADRTVRVWDTENPDY----SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSG 684 (837)
Q Consensus 610 ~~Latgs~Dg~I~IWDl~~~~~----~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~-~~~ 684 (837)
.+|+.+. .+.|+-.+++.... ....+..+...+..|+|++.++.++.+-..++.|+..++........+.. ...
T Consensus 2 ~fLl~s~-~~~I~~~~ld~~~~~~~~~~~~~~~~~~~~~~ld~D~~~~~iywsd~~~~~I~~~~l~g~~~~~v~~~~~~~ 80 (263)
T d1npea_ 2 THLLFAQ-TGKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGS 80 (263)
T ss_dssp EEEEEEE-EEEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCC
T ss_pred CEEEEeC-CCeEEEEECCCccccccccccccccCCCcEEEEEEEeCCCEEEEEECCCCeEEEEEcccCCcEEEEEecccc
Confidence 3444443 34677777764332 12233444556888999998888887777788999999986655544443 256
Q ss_pred eeEEEEecCCCEEEEEEc-CCeEEEEECCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEe--CCeEEEE--EcCCCCCce
Q 003236 685 ATQMRFQPRLGRILAAAI-ENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS--DELVRVW--SIGSGSKGE 759 (837)
Q Consensus 685 i~sl~~sp~g~~llags~-dg~I~iwDl~s~~~~~~l~~h~~~V~sl~~spdg~~Lasgs--Dg~I~Iw--Dl~s~~~~~ 759 (837)
+..+++..-++.|+.+.. .+.|.+.++........+......+..++++|...+|+... .+..+|| ++....
T Consensus 81 p~~iAvD~~~~~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~dG~~--- 157 (263)
T d1npea_ 81 PEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTN--- 157 (263)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCC---
T ss_pred ccEEEEeccCCeEEEeccCCCEEEEEecCCceEEEEecccccCCcEEEEecccCcEEEeecCCCCcEEEEecCCCCC---
Confidence 889999887788877665 57999999987654444444456789999999888777655 2233444 554332
Q ss_pred eEEEeecCCCceEEEEEeCCCCEEEEEEc-CCeEEEEECCCCcEEEeccCCCCeeEEEEeCCCCEEEEEE-CCCcEE
Q 003236 760 CIHELSCTGNKFHSCVFHPTFPSLLVIGC-YETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASAS-HDKCVK 834 (837)
Q Consensus 760 ~i~~~~~~~~~I~sv~fspdg~~L~sgs~-dg~I~IwDl~s~~~~~l~~h~~~V~sla~spdg~~LaSgs-~DG~I~ 834 (837)
........-.....+++++.+..|+.+.. .+.|...|+.......+........+|++. +..|+... ..+.|.
T Consensus 158 ~~~i~~~~~~~P~glaiD~~~~~lYw~d~~~~~I~~~~~~g~~~~~v~~~~~~P~~lav~--~~~lYwtd~~~~~I~ 232 (263)
T d1npea_ 158 RRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLEGLQYPFAVTSY--GKNLYYTDWKTNSVI 232 (263)
T ss_dssp CEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEECCCSEEEEEEE--TTEEEEEETTTTEEE
T ss_pred ceeeeeecccccceEEEeecCcEEEEEeCCCCEEEEEECCCCCeEEEECCCCCcEEEEEE--CCEEEEEECCCCEEE
Confidence 12222223345688999998888887754 568999999876654333323345678876 44454443 445544
|
| >d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Low density lipoprotein (LDL) receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.00 E-value=0.0076 Score=60.52 Aligned_cols=218 Identities=8% Similarity=0.028 Sum_probs=138.6
Q ss_pred EEEEEeCCCeEEEEEcCCCCceeEEeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCee----eeEEec-CCCe
Q 003236 611 RLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSC----AGVFKC-QSGA 685 (837)
Q Consensus 611 ~Latgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~----i~~~~~-~~~i 685 (837)
+|+.+.. ..|+..++++... ..+......+..++|++.++.++.+-..++.|...++..... ...+.. ...+
T Consensus 3 fLl~s~~-~~I~~~~l~~~~~--~~~~~~~~~~~~id~d~~~~~lYw~D~~~~~I~~~~l~~~~~~~~~~~~~~~~~~~p 79 (266)
T d1ijqa1 3 YLFFTNR-HEVRKMTLDRSEY--TSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAP 79 (266)
T ss_dssp EEEEECB-SSEEEEETTSCCC--EEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCC
T ss_pred EEEEECC-CeEEEEECCCCcc--eeeeCCCCceEEEEEEeCCCEEEEEECCCCEEEEEEecCCCCCcceEEEEeCCCCCc
Confidence 3444433 3588889987553 333345566789999998887877766677788777754221 111221 2457
Q ss_pred eEEEEecCCCEEEEEEc-CCeEEEEECCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEe---CCeEEEEEcCCCCCceeE
Q 003236 686 TQMRFQPRLGRILAAAI-ENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS---DELVRVWSIGSGSKGECI 761 (837)
Q Consensus 686 ~sl~~sp~g~~llags~-dg~I~iwDl~s~~~~~~l~~h~~~V~sl~~spdg~~Lasgs---Dg~I~IwDl~s~~~~~~i 761 (837)
..+++.+.++.|+.+.. .+.|.++++........+.........++++|...+|+.+. .+.|...++... ...
T Consensus 80 ~glAvD~~~~~lY~~d~~~~~I~v~~~~g~~~~~~~~~~~~~P~~l~vd~~~g~ly~~~~~~~~~I~r~~~dGs---~~~ 156 (266)
T d1ijqa1 80 DGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGV---DIY 156 (266)
T ss_dssp CEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSC---CEE
T ss_pred ceEEEeeccceEEEEecCCCEEEeEecCCceEEEEEcCCCCCcceEEEEcccCeEEEeccCCCcceeEeccCCC---cee
Confidence 78999988888887765 47899999987766666666667789999999766666554 345666666543 222
Q ss_pred EEeecCCCceEEEEEeCCCCEEEEEEc-CCeEEEEECCCCcEEEe---ccCCCCeeEEEEeCCCCEEEEEECCCcEEE
Q 003236 762 HELSCTGNKFHSCVFHPTFPSLLVIGC-YETLELWNMTENKTLTL---SAHDKLVSSLAASTVNGMVASASHDKCVKI 835 (837)
Q Consensus 762 ~~~~~~~~~I~sv~fspdg~~L~sgs~-dg~I~IwDl~s~~~~~l---~~h~~~V~sla~spdg~~LaSgs~DG~I~I 835 (837)
......-.....+++++.+..|+.+.. .+.|...|+.......+ ........+|++.. +.++.+-..++.|+.
T Consensus 157 ~l~~~~~~~p~gl~iD~~~~~lYw~d~~~~~I~~~~~dG~~~~~~~~~~~~~~~p~~lav~~-~~ly~td~~~~~I~~ 233 (266)
T d1ijqa1 157 SLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFE-DKVFWTDIINEAIFS 233 (266)
T ss_dssp EEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEET-TEEEEEETTTTEEEE
T ss_pred cccccccceeeEEEeeccccEEEEecCCcCEEEEEECCCCCEEEEEeCCCcccccEEEEEEC-CEEEEEECCCCeEEE
Confidence 222333456789999999888888755 46899999876543322 22234566788762 333333335555543
|
| >d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=97.92 E-value=0.0006 Score=76.93 Aligned_cols=188 Identities=9% Similarity=0.124 Sum_probs=111.8
Q ss_pred CCCEEEEEECCCcEEEEeC-CCCeEEEEeccCCC----Ce-------EEEEEcCCCCEEEEEeCCCeEEEEEcCCCCcee
Q 003236 566 DGKLLATGGHDKKAVLWCT-ESFTVKSTLEEHTQ----WI-------TDVRFSPSLSRLATSSADRTVRVWDTENPDYSL 633 (837)
Q Consensus 566 dg~~Lasgs~Dg~I~VWd~-~t~~~~~~l~~h~~----~I-------~~l~fspdg~~Latgs~Dg~I~IWDl~~~~~~~ 633 (837)
+|.++++.+.++.|...|. ++++.+-++..... .+ ..+++. +..|+.++.|+.|...|.++++...
T Consensus 62 ~g~vyv~t~~~~~v~Alda~~tG~~~W~~~~~~~~~~~~~~~~~~~~rg~a~~--~~~i~~~~~~g~l~alda~tG~~~w 139 (571)
T d2ad6a1 62 GDMMYVHSAFPNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAYG--AGQIVKKQANGHLLALDAKTGKINW 139 (571)
T ss_dssp TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEEE--TTEEEEECTTSEEEEEETTTCCEEE
T ss_pred CCEEEEecCCCCeEEEEeCCCCCceEEEecCCCCcccccccccCcCCCcceee--CCeEEEEeCCCcEEeeehhhhhhhc
Confidence 5544444445788989997 47998877641110 00 123333 3467888899999999999987533
Q ss_pred EEeec--c-ccceEEEEEcCCCCeEEEEEe-----CCCcEEEEECCCCeeeeEEecCCC---------------------
Q 003236 634 RTFTG--H-STTVMSLDFHPSKEDLLCSCD-----NNSEIRYWSINNGSCAGVFKCQSG--------------------- 684 (837)
Q Consensus 634 ~~~~~--h-~~~V~sl~fspdg~~llasgs-----~Dg~I~vwDl~t~~~i~~~~~~~~--------------------- 684 (837)
..-.. + ...++.--...+ +.+++.++ .+|.|+.+|+++|+.+..+.....
T Consensus 140 ~~~~~~~~~~~~~t~~p~v~~-~~vivg~~~~~~~~~G~v~a~D~~TG~~~W~~~t~~~~~~~~~~~~~~~~~~~~~~~~ 218 (571)
T d2ad6a1 140 EVEVCDPKVGSTLTQAPFVAK-DTVLMGCSGAELGVRGAVNAFDLKTGELKWRAFATGSDDSVRLAKDFNSANPHYGQFG 218 (571)
T ss_dssp EEECCCGGGTCBCCSCCEEET-TEEEEECBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCSS
T ss_pred cccccccccccceeecCeEeC-CeEEEeeccccccccCcEEEEECCCCcEEEEEeccCCcccccccccccccccccCccc
Confidence 32111 1 111111111112 33443332 367899999999999987653210
Q ss_pred ------------------eeEEEEecCCCEEEEEEc----------------CCeEEEEECCCCeEEEEEcCCCCC----
Q 003236 685 ------------------ATQMRFQPRLGRILAAAI----------------ENYISILDVETQVCRLKLQGHKNQ---- 726 (837)
Q Consensus 685 ------------------i~sl~~sp~g~~llags~----------------dg~I~iwDl~s~~~~~~l~~h~~~---- 726 (837)
-....+.+..+.++.+.. ...|...|+++++.+..+..+...
T Consensus 219 ~~~~~~~~~~~~~~gg~vW~~~s~D~~~g~~y~~tg~~~p~~~~~r~g~n~~s~svvAld~~TG~~~W~~q~~~~D~Wd~ 298 (571)
T d2ad6a1 219 LGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTPHDEWDF 298 (571)
T ss_dssp HHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEEESSTTCSSCC
T ss_pred ccccccCCcccccCCCccccccccchhcCeeeeecccccCccccccccccccccceeeeeccchhheecccccCcccccc
Confidence 123567777777776655 346888999999999887743221
Q ss_pred -----EEEEEEcCCCC---EEEEEe-CCeEEEEEcCCCC
Q 003236 727 -----VHSVCWNTSGE---YLASVS-DELVRVWSIGSGS 756 (837)
Q Consensus 727 -----V~sl~~spdg~---~Lasgs-Dg~I~IwDl~s~~ 756 (837)
.....+..+++ .++... +|.++++|..+++
T Consensus 299 D~~~~~~l~~~~~~g~~~~~v~~~~k~G~l~vlDr~tG~ 337 (571)
T d2ad6a1 299 AGVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRENGN 337 (571)
T ss_dssp CCCCCCEEEEEEETTEEEEEEEEECTTSEEEEEETTTCC
T ss_pred ccccccceeeeeccCccccceeeccccceEEEEecCCCc
Confidence 12222223443 344455 8899999988874
|
| >d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Peptidase/esterase 'gauge' domain family: Prolyl oligopeptidase, N-terminal domain domain: Prolyl oligopeptidase, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=97.89 E-value=0.0044 Score=66.83 Aligned_cols=240 Identities=8% Similarity=0.023 Sum_probs=134.8
Q ss_pred eEEEEEcCCCCEEEEEE-CC----CcEEEEeCCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCC--------------
Q 003236 558 VESCHFSPDGKLLATGG-HD----KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSAD-------------- 618 (837)
Q Consensus 558 V~sl~fSpdg~~Lasgs-~D----g~I~VWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~D-------------- 618 (837)
+..+++|||+++||.+- .+ ..|+++|+.+++.+...-. ......++|.+|++.|+....|
T Consensus 127 ~~~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~~~i~-~~~~~~~~W~~D~~~~~Y~~~~~~~~~~~~~~~~~~ 205 (430)
T d1qfma1 127 LRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLE-RVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTN 205 (430)
T ss_dssp EEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEE-EECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCC
T ss_pred ecceEecCCCCEEEEEeccccCchheeEEeccCcceecccccc-cccccceEEcCCCCEEEEEEeccccCcccccccccC
Confidence 44567899999988653 22 3799999999987743211 1223578899999988765433
Q ss_pred --CeEEEEEcCCCCce-eEEeecc--ccceEEEEEcCCCCeEEEEEeC--CCc--EEEEECCCCe--------eeeEEec
Q 003236 619 --RTVRVWDTENPDYS-LRTFTGH--STTVMSLDFHPSKEDLLCSCDN--NSE--IRYWSINNGS--------CAGVFKC 681 (837)
Q Consensus 619 --g~I~IWDl~~~~~~-~~~~~~h--~~~V~sl~fspdg~~llasgs~--Dg~--I~vwDl~t~~--------~i~~~~~ 681 (837)
..|..|.+.+.... ...+... ...+..+..+.++.++++.... +.. +.+.|+.... ....+..
T Consensus 206 ~~~~v~~h~lgt~~~~d~~v~~e~d~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~ 285 (430)
T d1qfma1 206 LHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLIDN 285 (430)
T ss_dssp CCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEECS
T ss_pred CcceEEEEECCCCccccccccccccCCceEEeeeccCCcceeeEEeeccCCccEEEEEeeCCCcccccccccceeEeecc
Confidence 25888888765432 2333332 2346677788998887765542 333 4455554321 1112221
Q ss_pred CCCeeEEEEecCCCEEEEEEc----CCeEEEEECCCCeE---EEEEcCCCCCEEEEEEcCCCCEEEEEe--CC--eEEEE
Q 003236 682 QSGATQMRFQPRLGRILAAAI----ENYISILDVETQVC---RLKLQGHKNQVHSVCWNTSGEYLASVS--DE--LVRVW 750 (837)
Q Consensus 682 ~~~i~sl~~sp~g~~llags~----dg~I~iwDl~s~~~---~~~l~~h~~~V~sl~~spdg~~Lasgs--Dg--~I~Iw 750 (837)
.........+ .+..++.-+. ++.|...++..... ...+..+...+..-.+...+.+|+... ++ .|+++
T Consensus 286 ~~~~~~~~~~-~~~~~~~~Tn~~a~~~~L~~~~~~~~~~~~w~~vi~~~~~~~~~~~~~~~~~~lvl~~~~~~~~~l~v~ 364 (430)
T d1qfma1 286 FEGEYDYVTN-EGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCYLHDVKNTLQLH 364 (430)
T ss_dssp SSSCEEEEEE-ETTEEEEEECTTCTTCEEEEEETTBCCGGGCEEEECCCSSCEEEEEEEETTTEEEEEEEETTEEEEEEE
T ss_pred cccceEEEec-CCceeecccCcccccceeEEecCCCCccccceEEecccCcceeeeEEEEECCEEEEEEEcCCEeEEEEE
Confidence 1222222222 3344444433 35777777765321 223333445555444444455565544 54 78999
Q ss_pred EcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcC----CeEEEEECCCCcE
Q 003236 751 SIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCY----ETLELWNMTENKT 802 (837)
Q Consensus 751 Dl~s~~~~~~i~~~~~~~~~I~sv~fspdg~~L~sgs~d----g~I~IwDl~s~~~ 802 (837)
++.++. .........+.+..+...++...+...-.+ .+++.||+.+++.
T Consensus 365 ~~~~~~---~~~~~~~~~~sv~~~~~~~~~~~~~~~~ss~~tP~~~y~~Dl~t~~~ 417 (430)
T d1qfma1 365 DLATGA---LLKIFPLEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEEL 417 (430)
T ss_dssp ETTTCC---EEEEECCCSSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSSC
T ss_pred ECCCCc---EEEecCCCCceEeeccCCCCCCEEEEEEcCCCCCCeEEEEECCCCCc
Confidence 998763 333333334555555555666555543332 4899999988753
|
| >d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Clathrin heavy-chain terminal domain family: Clathrin heavy-chain terminal domain domain: Clathrin heavy-chain terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=97.88 E-value=0.016 Score=58.41 Aligned_cols=247 Identities=10% Similarity=0.163 Sum_probs=155.0
Q ss_pred CcEEEEeCCCCeE-EEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeEEeeccccceEEEEEcCCCCeE
Q 003236 577 KKAVLWCTESFTV-KSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDL 655 (837)
Q Consensus 577 g~I~VWd~~t~~~-~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~sl~fspdg~~l 655 (837)
..|.|.|+.+... .+.--.- -+.-.+|..+.||.-+ ..++.|||+++.. .++.+.- ...|.--.|-.+.. +
T Consensus 45 ~~VvIidl~n~~~~~Rrpi~A----dsAIMhP~~~IiALra-g~~LQiFnletK~-klks~~~-~e~VvfWkWis~~~-L 116 (327)
T d1utca2 45 AQVVIIDMNDPSNPIRRPISA----DSAIMNPASKVIALKA-GKTLQIFNIEMKS-KMKAHTM-TDDVTFWKWISLNT-V 116 (327)
T ss_dssp EEEEEEETTSTTSCEEEECCC----SEEEECSSSSEEEEEE-TTEEEEEETTTTE-EEEEEEC-SSCCCEEEESSSSE-E
T ss_pred ceEEEEECCCCCcceecccch----hhhhcCCCCcEEEEec-CCeEEEEehhHhh-hhceEEc-CCCcEEEEecCCCE-E
Confidence 4788889876442 2222111 2334578877777766 5689999999855 3555543 34666667765533 3
Q ss_pred EEEEeCCCcEEEEECCC-CeeeeEEec-----CCCeeEEEEecCCCEEEEEEc-------CCeEEEEECCCCeEEEEEcC
Q 003236 656 LCSCDNNSEIRYWSINN-GSCAGVFKC-----QSGATQMRFQPRLGRILAAAI-------ENYISILDVETQVCRLKLQG 722 (837)
Q Consensus 656 lasgs~Dg~I~vwDl~t-~~~i~~~~~-----~~~i~sl~~sp~g~~llags~-------dg~I~iwDl~s~~~~~~l~~ 722 (837)
. ... +..|+-|+++. ..+.+.+.. ...|.....+++.++++..+- .|.+.+|..+.+. -..+.+
T Consensus 117 ~-lVT-~taVYHW~~~g~s~P~k~fdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~i~G~mQLYS~er~~-sQ~ieG 193 (327)
T d1utca2 117 A-LVT-DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKV-SQPIEG 193 (327)
T ss_dssp E-EEC-SSEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTTE-EEEECC
T ss_pred E-EEc-CCceEEEcccCCCCchhhhhhcccccCceEEEEEECCCCCEEEEEeEecCCCceeEEEEEEEeccCc-Cccccc
Confidence 3 332 56899999954 345565553 234777888888888776542 3678899988653 345666
Q ss_pred CCCCEEEEEEcCCC---CEEEEEe----CCeEEEEEcCCCCCc------eeEEEee---cCCCceEEEEEeCCCCEEEEE
Q 003236 723 HKNQVHSVCWNTSG---EYLASVS----DELVRVWSIGSGSKG------ECIHELS---CTGNKFHSCVFHPTFPSLLVI 786 (837)
Q Consensus 723 h~~~V~sl~~spdg---~~Lasgs----Dg~I~IwDl~s~~~~------~~i~~~~---~~~~~I~sv~fspdg~~L~sg 786 (837)
|......+.+..+. .+++.+. .+.+.|.++...... +.+..+- ....-..++.+++....++..
T Consensus 194 haa~F~~~~~~g~~~~~~lf~fa~r~~~~~kLhIiEig~~~~g~~~f~kk~vdi~fppea~~DFPvamqvs~kygiiyvi 273 (327)
T d1utca2 194 HAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLI 273 (327)
T ss_dssp SEEEEEEECCTTCSSCEEEEEEEEEETTEEEEEEEECSCCCTTCCCCCCEEEECCCCTTCTTCCEEEEEEETTTTEEEEE
T ss_pred eeeeeEEEEcCCCCCCceEEEEEECCCCCcEEEEEEcCCCccCCCCCcceeEEEECCccccCCcEEEEEeeccCCEEEEE
Confidence 75544444433211 2333333 358999999764221 1111111 113445778899999999999
Q ss_pred EcCCeEEEEECCCCcEEE-eccCCCCeeEEEEeCCCCEEEEEECCCcEE
Q 003236 787 GCYETLELWNMTENKTLT-LSAHDKLVSSLAASTVNGMVASASHDKCVK 834 (837)
Q Consensus 787 s~dg~I~IwDl~s~~~~~-l~~h~~~V~sla~spdg~~LaSgs~DG~I~ 834 (837)
+..|.|++||+.++.++. -.-..+.|...+-+.+..=+++...+|.|.
T Consensus 274 TK~G~i~lyDleTgt~i~~nRIs~~~iF~~a~~~~~~Gi~~VNr~GqVl 322 (327)
T d1utca2 274 TKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAGIIGVNRKGQVL 322 (327)
T ss_dssp ETTSEEEEEETTTCCEEEEEECCSSCEEEEEEETTTTEEEEEETTSEEE
T ss_pred ecCcEEEEEEcccccEEEEeecCCCceEEeccCCCCceEEEECCCCeEE
Confidence 999999999999999883 334456666555555554555566777663
|
| >d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Clathrin heavy-chain terminal domain family: Clathrin heavy-chain terminal domain domain: Clathrin heavy-chain terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=97.85 E-value=0.014 Score=58.73 Aligned_cols=225 Identities=13% Similarity=0.189 Sum_probs=146.7
Q ss_pred EEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeEEeecc
Q 003236 560 SCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGH 639 (837)
Q Consensus 560 sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~~~~~~~~~~~h 639 (837)
+.-.+|..+.||.-+ ..++.|||+++...++.+. ....|.-=.|-.+ +.|+..+ +..|+-|+++....+.+.+..|
T Consensus 67 sAIMhP~~~IiALra-g~~LQiFnletK~klks~~-~~e~VvfWkWis~-~~L~lVT-~taVYHW~~~g~s~P~k~fdR~ 142 (327)
T d1utca2 67 SAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHT-MTDDVTFWKWISL-NTVALVT-DNAVYHWSMEGESQPVKMFDRH 142 (327)
T ss_dssp EEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEEE-CSSCCCEEEESSS-SEEEEEC-SSEEEEEESSSSCCCEEEEECC
T ss_pred hhhcCCCCcEEEEec-CCeEEEEehhHhhhhceEE-cCCCcEEEEecCC-CEEEEEc-CCceEEEcccCCCCchhhhhhc
Confidence 455678888888776 5689999999999988876 4456777778755 4455553 4579999997766677777776
Q ss_pred c----cceEEEEEcCCCCeEEEEEe------CCCcEEEEECCCCeeeeEEecCCCeeEEE-Ee----cCCCEEEEEE---
Q 003236 640 S----TTVMSLDFHPSKEDLLCSCD------NNSEIRYWSINNGSCAGVFKCQSGATQMR-FQ----PRLGRILAAA--- 701 (837)
Q Consensus 640 ~----~~V~sl~fspdg~~llasgs------~Dg~I~vwDl~t~~~i~~~~~~~~i~sl~-~s----p~g~~llags--- 701 (837)
. ..|.....+++.+.++++|= -.|.+.+|..+.+.. ..+.. ...+.. +- +....+++-.
T Consensus 143 ~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~i~G~mQLYS~er~~s-Q~ieG--haa~F~~~~~~g~~~~~~lf~fa~r~ 219 (327)
T d1utca2 143 SSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVS-QPIEG--HAASFAQFKMEGNAEESTLFCFAVRG 219 (327)
T ss_dssp GGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTTEE-EEECC--SEEEEEEECCTTCSSCEEEEEEEEEE
T ss_pred ccccCceEEEEEECCCCCEEEEEeEecCCCceeEEEEEEEeccCcC-ccccc--eeeeeEEEEcCCCCCCceEEEEEECC
Confidence 5 46777788888888877652 236778888875432 22221 111111 10 0111122221
Q ss_pred -cCCeEEEEECCCC--------eEEEEE-cC---CCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecC
Q 003236 702 -IENYISILDVETQ--------VCRLKL-QG---HKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCT 767 (837)
Q Consensus 702 -~dg~I~iwDl~s~--------~~~~~l-~~---h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~ 767 (837)
..+.+.|.++... +....+ .. ..+-..++..++.-.+++..+ -|.|++||+.++ .++..-+..
T Consensus 220 ~~~~kLhIiEig~~~~g~~~f~kk~vdi~fppea~~DFPvamqvs~kygiiyviTK~G~i~lyDleTg---t~i~~nRIs 296 (327)
T d1utca2 220 QAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETG---TCIYMNRIS 296 (327)
T ss_dssp TTEEEEEEEECSCCCTTCCCCCCEEEECCCCTTCTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTC---CEEEEEECC
T ss_pred CCCcEEEEEEcCCCccCCCCCcceeEEEECCccccCCcEEEEEeeccCCEEEEEecCcEEEEEEcccc---cEEEEeecC
Confidence 1268888887642 111112 11 234556788888777777777 999999999998 788777777
Q ss_pred CCceEEEEEeCCCCEEEEEEcCCeEEE
Q 003236 768 GNKFHSCVFHPTFPSLLVIGCYETLEL 794 (837)
Q Consensus 768 ~~~I~sv~fspdg~~L~sgs~dg~I~I 794 (837)
...|...+-+.+..-+++...+|.|..
T Consensus 297 ~~~iF~~a~~~~~~Gi~~VNr~GqVl~ 323 (327)
T d1utca2 297 GETIFVTAPHEATAGIIGVNRKGQVLS 323 (327)
T ss_dssp SSCEEEEEEETTTTEEEEEETTSEEEE
T ss_pred CCceEEeccCCCCceEEEECCCCeEEE
Confidence 777776666666666777777776654
|
| >d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Pseudomonas putida, hk5 [TaxId: 303]
Probab=97.79 E-value=0.0011 Score=74.64 Aligned_cols=263 Identities=13% Similarity=0.077 Sum_probs=154.4
Q ss_pred EEEEEECCCcEEEEeCCCCeEEEEeccCCC----------Ce-EEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeEEee
Q 003236 569 LLATGGHDKKAVLWCTESFTVKSTLEEHTQ----------WI-TDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFT 637 (837)
Q Consensus 569 ~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~----------~I-~~l~fspdg~~Latgs~Dg~I~IWDl~~~~~~~~~~~ 637 (837)
.|++++.++.|+-.|.++++.+-++..... .+ ..++. .+..++.+..|+.|...|..+++.......
T Consensus 68 ~vyv~t~~~~v~AlDa~tG~~lW~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~~g~l~Alda~tG~~~w~~~~ 145 (560)
T d1kv9a2 68 VIYTSMSWSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVAL--WGDKVYVGTLDGRLIALDAKTGKAIWSQQT 145 (560)
T ss_dssp EEEEEEGGGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE--EBTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred EEEEECCCCeEEEEeCCCCCEEEEECCCCCccccccccccccccCcce--eCCeEEEEeCCCEEEEEECCCCcEEeccCc
Confidence 566677789999999999999977632110 00 11111 144688888999999999998875332222
Q ss_pred ccccceEEEEEcC--CCCeEEEEEe------CCCcEEEEECCCCeeeeEEecCC--------------------------
Q 003236 638 GHSTTVMSLDFHP--SKEDLLCSCD------NNSEIRYWSINNGSCAGVFKCQS-------------------------- 683 (837)
Q Consensus 638 ~h~~~V~sl~fsp--dg~~llasgs------~Dg~I~vwDl~t~~~i~~~~~~~-------------------------- 683 (837)
........+.-.| .+..++ .+. ..|.|+.+|.++|+.+..+....
T Consensus 146 ~~~~~~~~~~~~p~v~~~~vi-vg~~~~~~~~~G~v~a~D~~TG~~~W~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (560)
T d1kv9a2 146 TDPAKPYSITGAPRVVKGKVI-IGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQGDQYWK 224 (560)
T ss_dssp SCTTSSCBCCSCCEEETTEEE-ECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCCSSCHHH
T ss_pred cCcccceeeeeeeeeecCccc-ccccceeccccceEEEEECCCceEEeeeeeccccccCCcccccccccccccccccccc
Confidence 1111111110011 012233 332 23679999999999998886311
Q ss_pred ------CeeEEEEecCCCEEEEEEc-------------------CCeEEEEECCCCeEEEEEcCCCCCE---------EE
Q 003236 684 ------GATQMRFQPRLGRILAAAI-------------------ENYISILDVETQVCRLKLQGHKNQV---------HS 729 (837)
Q Consensus 684 ------~i~sl~~sp~g~~llags~-------------------dg~I~iwDl~s~~~~~~l~~h~~~V---------~s 729 (837)
.-..+.+.+..+.++.+.. ...|.-+|+++++.+..+......+ .-
T Consensus 225 ~~~G~~~W~~~s~D~~~~l~y~~tgn~~~~~~~~~~~~~g~n~~s~sivAld~~tG~~~W~~Q~~~~D~wd~d~~~~~~l 304 (560)
T d1kv9a2 225 LGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQITL 304 (560)
T ss_dssp HCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCEEE
T ss_pred ccCCCCcccccccccccCeeeecCCCCcccccccccccCCccccceeeEEecCCccceeEEEeccccccccccccceeee
Confidence 1123567777777766442 2358888999999887776422211 11
Q ss_pred EEEcCCCC---EEEEEe-CCeEEEEEcCCCCCceeEEEeecCC------------------------------------C
Q 003236 730 VCWNTSGE---YLASVS-DELVRVWSIGSGSKGECIHELSCTG------------------------------------N 769 (837)
Q Consensus 730 l~~spdg~---~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~------------------------------------~ 769 (837)
+.+..+++ .++.+. +|.++++|..+++ .+....... .
T Consensus 305 ~~~~~~g~~~~~v~~~~k~G~~~~lDr~tG~---~i~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~p~~~Gg~ 381 (560)
T d1kv9a2 305 AELNIDGKPRKVLMQAPKNGFFYVLDRTNGK---LISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSPFGAH 381 (560)
T ss_dssp EEEEETTEEEEEEEECCTTSEEEEEETTTCC---EEEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESSCTTCSS
T ss_pred eeeecCCceeeeeeecCccceEEEEecCCCc---ccccccccccccccccChhhccccccccccccccceeeeecccccc
Confidence 22222332 444455 8899999998884 332211100 0
Q ss_pred ceEEEEEeCCCCEEEEEEcC------------------------------------CeEEEEECCCCcEEEeccCCCCee
Q 003236 770 KFHSCVFHPTFPSLLVIGCY------------------------------------ETLELWNMTENKTLTLSAHDKLVS 813 (837)
Q Consensus 770 ~I~sv~fspdg~~L~sgs~d------------------------------------g~I~IwDl~s~~~~~l~~h~~~V~ 813 (837)
.....+++|+...+++...+ |.|.-||+.+++++-......+..
T Consensus 382 ~w~~~a~dp~~~~~yvp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~G~l~A~D~~tGk~~W~~~~~~~~~ 461 (560)
T d1kv9a2 382 NWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGALLAWDPVKQKAAWKVPYPTHWN 461 (560)
T ss_dssp CSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEETTTTEEEEEEEESSSCC
T ss_pred ccccccccCCCCeeecccccccceeeccccccccccccccccCcccccCCCCcccccceEEEeCCCCeEeeeccCCCCCC
Confidence 01245677887777665432 467889999999883222223332
Q ss_pred EEEEeCCCCEEEEEECCCcEEEeC
Q 003236 814 SLAASTVNGMVASASHDKCVKIWK 837 (837)
Q Consensus 814 sla~spdg~~LaSgs~DG~I~IWd 837 (837)
+-.++-.+.++++|+.||.++.+|
T Consensus 462 gg~l~TagglVF~G~~dg~l~A~D 485 (560)
T d1kv9a2 462 GGTLSTAGNLVFQGTAAGQMHAYS 485 (560)
T ss_dssp CCEEEETTTEEEEECTTSEEEEEE
T ss_pred CceeEECCCEEEEECCCCcEEEEE
Confidence 223344577888899999998875
|
| >d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=97.72 E-value=0.0032 Score=70.76 Aligned_cols=256 Identities=9% Similarity=-0.007 Sum_probs=143.1
Q ss_pred CEEEEEECCCcEEEEeCCCCeEEEEeccCC----CCeEEEEEcCCCCEEEEEe------CCCeEEEEEcCCCCceeEEee
Q 003236 568 KLLATGGHDKKAVLWCTESFTVKSTLEEHT----QWITDVRFSPSLSRLATSS------ADRTVRVWDTENPDYSLRTFT 637 (837)
Q Consensus 568 ~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~----~~I~~l~fspdg~~Latgs------~Dg~I~IWDl~~~~~~~~~~~ 637 (837)
..|+.++.|+.|...|.++++.+....... ..++.--...++ .++++. .+|.|+-+|+.+++...+...
T Consensus 116 ~~i~~~~~~g~l~alda~tG~~~w~~~~~~~~~~~~~t~~p~v~~~-~vivg~~~~~~~~~G~v~a~D~~TG~~~W~~~t 194 (571)
T d2ad6a1 116 GQIVKKQANGHLLALDAKTGKINWEVEVCDPKVGSTLTQAPFVAKD-TVLMGCSGAELGVRGAVNAFDLKTGELKWRAFA 194 (571)
T ss_dssp TEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEETT-EEEEECBCGGGTCCCEEEEEETTTCCEEEEEES
T ss_pred CeEEEEeCCCcEEeeehhhhhhhccccccccccccceeecCeEeCC-eEEEeeccccccccCcEEEEECCCCcEEEEEec
Confidence 467778899999999999999876553211 111111111133 444444 378899999999886433221
Q ss_pred cc------------------------------------ccce-EEEEEcCCCCeEEEEEeC---------------CCcE
Q 003236 638 GH------------------------------------STTV-MSLDFHPSKEDLLCSCDN---------------NSEI 665 (837)
Q Consensus 638 ~h------------------------------------~~~V-~sl~fspdg~~llasgs~---------------Dg~I 665 (837)
.. ...+ ...++++....+++..+. ...|
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gg~vW~~~s~D~~~g~~y~~tg~~~p~~~~~r~g~n~~s~sv 274 (571)
T d2ad6a1 195 TGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTI 274 (571)
T ss_dssp SSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEE
T ss_pred cCCcccccccccccccccccCcccccccccCCcccccCCCccccccccchhcCeeeeecccccCccccccccccccccce
Confidence 10 0112 234556665533332221 2468
Q ss_pred EEEECCCCeeeeEEecC----------CCeeEEEEecCCC---EEEEEEcCCeEEEEECCCCeEEEEEcCCC--C-----
Q 003236 666 RYWSINNGSCAGVFKCQ----------SGATQMRFQPRLG---RILAAAIENYISILDVETQVCRLKLQGHK--N----- 725 (837)
Q Consensus 666 ~vwDl~t~~~i~~~~~~----------~~i~sl~~sp~g~---~llags~dg~I~iwDl~s~~~~~~l~~h~--~----- 725 (837)
...|+++++.+..+... .......+..+++ .++.++.+|.++++|.++++.+....... .
T Consensus 275 vAld~~TG~~~W~~q~~~~D~Wd~D~~~~~~l~~~~~~g~~~~~v~~~~k~G~l~vlDr~tG~~i~~~~~~~~~~~~~~~ 354 (571)
T d2ad6a1 275 WGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDPAVNVFKKV 354 (571)
T ss_dssp EEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEE
T ss_pred eeeeccchhheecccccCccccccccccccceeeeeccCccccceeeccccceEEEEecCCCcEeeeeccCCcccccccc
Confidence 88999999999887741 1122223333443 35667788999999999998875432110 0
Q ss_pred ------C---------------E-----------EEEEEcCCCCEEEEEe-C----------------------------
Q 003236 726 ------Q---------------V-----------HSVCWNTSGEYLASVS-D---------------------------- 744 (837)
Q Consensus 726 ------~---------------V-----------~sl~~spdg~~Lasgs-D---------------------------- 744 (837)
+ + ...+++|+..++++.. +
T Consensus 355 ~~~~~~~i~~~~~~~~~~~~g~~~~p~~~Gg~~w~~~a~dP~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 434 (571)
T d2ad6a1 355 DLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAMYPG 434 (571)
T ss_dssp CTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEEC
T ss_pred cccccccccCcccccccccCceEEEeccccccccccceECCCCceEEEeccccccccccccccccCCccccccceeeccc
Confidence 0 0 1256677766666543 2
Q ss_pred ---------CeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEEEeccCCCCe--e
Q 003236 745 ---------ELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSAHDKLV--S 813 (837)
Q Consensus 745 ---------g~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fspdg~~L~sgs~dg~I~IwDl~s~~~~~l~~h~~~V--~ 813 (837)
|.|.-+|+.++ +.+-...... ...+-.+...+..+++++.|+.++.||.++|+.+-...-...+ .
T Consensus 435 ~~~~~~~~~G~l~AiD~~TG---~~~W~~~~~~-~~~~g~l~TagglVf~G~~dg~l~A~Da~tGe~lW~~~l~~~~~a~ 510 (571)
T d2ad6a1 435 PNGPTKKEMGQIRAFDLTTG---KAKWTKWEKF-AAWGGTLYTKGGLVWYATLDGYLKALDNKDGKELWNFKMPSGGIGS 510 (571)
T ss_dssp TTSTTSCCCEEEEEECTTTC---CEEEEEEESS-CCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSC
T ss_pred cCCcccCCcccEEEeccCCC---ceeeEcCCCC-CCCcceeEecCCEEEEECCCCeEEEEECCCCcEEEEEECCCCceec
Confidence 23555555555 2222222111 1111122334567888999999999999999998222211222 2
Q ss_pred EEEEeCCCC-EEEEEE
Q 003236 814 SLAASTVNG-MVASAS 828 (837)
Q Consensus 814 sla~spdg~-~LaSgs 828 (837)
-+.|..||+ ||++..
T Consensus 511 P~ty~~dGkqYi~v~~ 526 (571)
T d2ad6a1 511 PMTYSFKGKQYIGSMY 526 (571)
T ss_dssp CEEEEETTEEEEEEEE
T ss_pred ceEEEECCEEEEEEEe
Confidence 255566786 555443
|
| >d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylobacterium extorquens [TaxId: 408]
Probab=97.72 E-value=0.0041 Score=70.16 Aligned_cols=188 Identities=12% Similarity=0.098 Sum_probs=113.5
Q ss_pred CCCEEEEEECCCcEEEEeC-CCCeEEEEeccCCC----------C-eEEEEEcCC----CCEEEEEeCCCeEEEEEcCCC
Q 003236 566 DGKLLATGGHDKKAVLWCT-ESFTVKSTLEEHTQ----------W-ITDVRFSPS----LSRLATSSADRTVRVWDTENP 629 (837)
Q Consensus 566 dg~~Lasgs~Dg~I~VWd~-~t~~~~~~l~~h~~----------~-I~~l~fspd----g~~Latgs~Dg~I~IWDl~~~ 629 (837)
+|.++++++.++.|...|. ++++.+-.+..... . -..+++.++ ..+|+.++.|+.|.-.|.+++
T Consensus 62 ~g~ly~~t~~~~~v~a~d~~~tG~~~W~~~~~~~~~~~~~~~~~~~~RGv~~~~~~~~~~~~v~~~t~dg~l~Alda~tG 141 (596)
T d1w6sa_ 62 DGKMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQLDGNVAALNAETG 141 (596)
T ss_dssp TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECTTSEEEEEETTTC
T ss_pred CCEEEEeeCCCCcEEEEeCCCCCCEEEEecCCCCcccccccccccccceeEEecCCCCCceEEEEEeCCCCeEeeccccC
Confidence 4555555555677888886 57888877631110 1 123445432 346889999999999999998
Q ss_pred CceeEEeecc--c-cceEE-EEEcCCCCeEEEEEe------CCCcEEEEECCCCeeeeEEecCC----------------
Q 003236 630 DYSLRTFTGH--S-TTVMS-LDFHPSKEDLLCSCD------NNSEIRYWSINNGSCAGVFKCQS---------------- 683 (837)
Q Consensus 630 ~~~~~~~~~h--~-~~V~s-l~fspdg~~llasgs------~Dg~I~vwDl~t~~~i~~~~~~~---------------- 683 (837)
+.+...-... . ..++. -.+. ++.++ .+. ..|.|+-+|+++|+.+..+....
T Consensus 142 ~~~w~~~~~d~~~~~~~t~~P~v~--~~~vi-vg~~~~e~~~~G~v~A~Da~TG~~~W~~~t~~~~~~~~~~~~~~~~~~ 218 (596)
T d1w6sa_ 142 ETVWKVENSDIKVGSTLTIAPYVV--KDKVI-IGSSGAELGVRGYLTAYDVKTGEQVWRAYATGPDKDLLLASDFNIKNP 218 (596)
T ss_dssp CEEEEEECCCGGGTCBCCSCCEEE--TTEEE-ECCBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCG
T ss_pred ceeccccccccccccccccCCcEE--CCeEE-EeeccccccccCceEEEECCCCcEEEEeeccCCccccccccccccccc
Confidence 8644332211 1 11111 1111 23233 443 24899999999999998765311
Q ss_pred -----------------------CeeEEEEecCCCEEEEEEcC----------------CeEEEEECCCCeEEEEEcC--
Q 003236 684 -----------------------GATQMRFQPRLGRILAAAIE----------------NYISILDVETQVCRLKLQG-- 722 (837)
Q Consensus 684 -----------------------~i~sl~~sp~g~~llags~d----------------g~I~iwDl~s~~~~~~l~~-- 722 (837)
.-..+.+.+..+.++.+..+ +.|...|+++++.+..+..
T Consensus 219 ~~g~~~~~~~tw~g~~~~~gg~~~W~~~s~D~~~~lvy~~tg~~~p~~~~~r~g~n~ys~sivAlD~~TG~~~W~~Q~~~ 298 (596)
T d1w6sa_ 219 HYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKTP 298 (596)
T ss_dssp GGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESST
T ss_pred cccccccccccCCCCceecCCCccccccccccCCCeeeccccccccccccccccccccccccccccccccccccccccee
Confidence 12245677777777776542 3588899999999887764
Q ss_pred CCC-------CEEEEEE-cCCCC---EEEEEe-CCeEEEEEcCCCC
Q 003236 723 HKN-------QVHSVCW-NTSGE---YLASVS-DELVRVWSIGSGS 756 (837)
Q Consensus 723 h~~-------~V~sl~~-spdg~---~Lasgs-Dg~I~IwDl~s~~ 756 (837)
|.. .+..+.. ..+|+ .++... +|.+.++|..+++
T Consensus 299 ~D~Wd~d~~~~~~l~d~~~~~G~~~~~v~~~~k~G~~~vlDr~tG~ 344 (596)
T d1w6sa_ 299 HDEWDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLDRTDGA 344 (596)
T ss_dssp TCSSCCCCCCCCEEEEEECTTSCEEEEEEEECTTSEEEEEETTTCC
T ss_pred ccccCCccccceeeeeccccccccccceeccccccceeeecCCCCc
Confidence 221 1222221 23443 455555 8899999998884
|
| >d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Paracoccus denitrificans [TaxId: 266]
Probab=97.69 E-value=0.0039 Score=66.12 Aligned_cols=185 Identities=15% Similarity=0.163 Sum_probs=123.1
Q ss_pred CCCeEEEEEeCCCcEEEEECCCCeeeeEEec--CCCeeEEEEec--CCCEEEEEEcCC------------------eEEE
Q 003236 651 SKEDLLCSCDNNSEIRYWSINNGSCAGVFKC--QSGATQMRFQP--RLGRILAAAIEN------------------YISI 708 (837)
Q Consensus 651 dg~~llasgs~Dg~I~vwDl~t~~~i~~~~~--~~~i~sl~~sp--~g~~llags~dg------------------~I~i 708 (837)
||+++++.-..+..|.+.|+++.++...+.. ...+..++..+ +..++++.+... .+.+
T Consensus 98 DGrylFVNDkan~RVAvIdl~~fkt~kIi~iPn~~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~l~d~~~y~~~~t~ 177 (459)
T d1fwxa2 98 DGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTA 177 (459)
T ss_dssp EEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGG-EEEEEEE
T ss_pred ceeEEEEEcCCCceEEEEECcceeeeEEEecCCCCCCceeecccCCCeEEEEccCccccccCCCCccccchhhcceEEEE
Confidence 6788888888899999999999998775554 45677777654 556677766532 3678
Q ss_pred EECCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEe-CC---------------eEEEEEc--------------------
Q 003236 709 LDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DE---------------LVRVWSI-------------------- 752 (837)
Q Consensus 709 wDl~s~~~~~~l~~h~~~V~sl~~spdg~~Lasgs-Dg---------------~I~IwDl-------------------- 752 (837)
+|..+.+....+.. ......+.++++|+++++.+ +. .+.++++
T Consensus 178 ID~~tm~V~~QV~V-~g~ld~~~~s~dGK~af~TsyNSE~g~~l~e~ta~e~D~i~V~n~~rie~av~~Gk~~eingV~V 256 (459)
T d1fwxa2 178 VDADKWEVAWQVLV-SGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVKV 256 (459)
T ss_dssp EETTTTEEEEEEEE-SSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEEE
T ss_pred EecCCceEEEEeee-CCChhccccCCCCCEEEEEeccccCCcchhhcccccceEEEEechHHhHHhhhcCCcEEeCCcee
Confidence 99999888777653 34567889999999998876 21 2334433
Q ss_pred ---CCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEc-CCeEEEEECCCCc------------EEEeccCCCCeeEEE
Q 003236 753 ---GSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGC-YETLELWNMTENK------------TLTLSAHDKLVSSLA 816 (837)
Q Consensus 753 ---~s~~~~~~i~~~~~~~~~I~sv~fspdg~~L~sgs~-dg~I~IwDl~s~~------------~~~l~~h~~~V~sla 816 (837)
+.......+..+. .......|.++|||+++++++. +.+|.|+|++.-. ........-.....+
T Consensus 257 VD~~~~~~~~v~~yIP-VpKsPHGV~vSPDGKyi~VaGKLs~tVSViD~~Ki~~~~~~~~~~~~~~~~e~elglgPLht~ 335 (459)
T d1fwxa2 257 VDGRKEASSLFTRYIP-IANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELGLGPLHTA 335 (459)
T ss_dssp EECSGG--CSSEEEEE-EESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCC-GGGGEEECCBCCSCEEEEE
T ss_pred ecccccCCcceeEEEe-cCCCCCceEECCCCCEEEEeCCcCCcEEEEEehhhhhhhcccCCccccEEeecccCcCccccc
Confidence 2211111111121 1233567899999999998876 5699999986321 112223344556778
Q ss_pred EeCCCCEEEEEECCCcEEEeC
Q 003236 817 ASTVNGMVASASHDKCVKIWK 837 (837)
Q Consensus 817 ~spdg~~LaSgs~DG~I~IWd 837 (837)
|+..|.-..|.--|..|.-|+
T Consensus 336 fd~~g~aytslfids~v~kw~ 356 (459)
T d1fwxa2 336 FDGRGNAYTSLFLDSQVVKWN 356 (459)
T ss_dssp ECTTSEEEEEETTTTEEEEEE
T ss_pred cCCCceEEEEeeccceEEEEe
Confidence 888876555556788888885
|
| >d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Comamonas testosteroni [TaxId: 285]
Probab=97.58 E-value=0.0055 Score=68.77 Aligned_cols=262 Identities=13% Similarity=0.090 Sum_probs=152.1
Q ss_pred CCCEEEEEECCCcEEEEeCCCCeEEEEeccCC----------CCe-EEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeE
Q 003236 566 DGKLLATGGHDKKAVLWCTESFTVKSTLEEHT----------QWI-TDVRFSPSLSRLATSSADRTVRVWDTENPDYSLR 634 (837)
Q Consensus 566 dg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~----------~~I-~~l~fspdg~~Latgs~Dg~I~IWDl~~~~~~~~ 634 (837)
+| .|++++.++.|.-+|.++++.+-++.... ..+ ..+.+. ...++.++.|+.+...|..+++....
T Consensus 77 ~g-~vyv~t~~~~v~AlDa~TG~~~W~~~~~~~~~~~~~~~~~~~~~g~~~~--~~~v~~~t~~g~l~alda~tG~~~W~ 153 (573)
T d1kb0a2 77 DG-IMYVSASWSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVALW--KGKVYVGAWDGRLIALDAATGKEVWH 153 (573)
T ss_dssp TT-EEEEECGGGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEEE--TTEEEEECTTSEEEEEETTTCCEEEE
T ss_pred CC-EEEEECCCCeEEEEeCCCCCeEEEeCCCCCcccccccccccccccceEE--CCcEEEEecccceeeeccccccceec
Confidence 44 56667788999999999999997764211 011 112222 33677788899999999998875333
Q ss_pred Eeec-cc-cceE----EEEEcCCCCeEEEEEe------CCCcEEEEECCCCeeeeEEecCC-------------------
Q 003236 635 TFTG-HS-TTVM----SLDFHPSKEDLLCSCD------NNSEIRYWSINNGSCAGVFKCQS------------------- 683 (837)
Q Consensus 635 ~~~~-h~-~~V~----sl~fspdg~~llasgs------~Dg~I~vwDl~t~~~i~~~~~~~------------------- 683 (837)
.... +. ..+. .+.+ + +.++ .++ ..|.|+.+|.++|+.+..+....
T Consensus 154 ~~~~~~~~~~~~~~~~p~v~--~-~~vi-vg~~~~~~~~~G~v~a~D~~TG~~~W~~~t~~~~~~~~~~~~~~~~~~~t~ 229 (573)
T d1kb0a2 154 QNTFEGQKGSLTITGAPRVF--K-GKVI-IGNGGAEYGVRGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAARTW 229 (573)
T ss_dssp EETTTTCCSSCBCCSCCEEE--T-TEEE-ECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTS
T ss_pred ccCccCCcceEEeecceEEE--e-ccEE-EeeccccccccceEEEEecCCccceeeeeeccccCCCCCCccccccccccc
Confidence 2221 11 1111 1111 1 3233 332 24689999999999998775311
Q ss_pred -------------C-eeEEEEecCCCEEEEEEc-------------------CCeEEEEECCCCeEEEEEcCCCC-----
Q 003236 684 -------------G-ATQMRFQPRLGRILAAAI-------------------ENYISILDVETQVCRLKLQGHKN----- 725 (837)
Q Consensus 684 -------------~-i~sl~~sp~g~~llags~-------------------dg~I~iwDl~s~~~~~~l~~h~~----- 725 (837)
. -....+.++.+.++.... ...|...|+++++.+..+.....
T Consensus 230 ~~~~~~~~~~~G~~vW~~~s~D~~~g~~~~~~g~~~~~~~~~~~~~~g~~~~~~svvAld~~tG~~~W~~q~~~~d~wd~ 309 (573)
T d1kb0a2 230 DPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDY 309 (573)
T ss_dssp CGGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCC
T ss_pred CCCCceeecCCCCcccccceEchhhCeeeeccCCCccccccccccccccccccceEEEecccchheeecccccCcccccc
Confidence 0 123566777777665432 12578889999988877654221
Q ss_pred ----CEEEEEEcCCC---CEEEEEe-CCeEEEEEcCCCCCceeEEEeecC------------------------------
Q 003236 726 ----QVHSVCWNTSG---EYLASVS-DELVRVWSIGSGSKGECIHELSCT------------------------------ 767 (837)
Q Consensus 726 ----~V~sl~~spdg---~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~------------------------------ 767 (837)
.........++ ..++.++ +|.+.++|..+++. +......
T Consensus 310 d~~~~~~l~~~~~~g~~~~~v~~~~k~G~l~~lDr~tGe~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (573)
T d1kb0a2 310 TSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKF---ISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAV 386 (573)
T ss_dssp CCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCE---EEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECS
T ss_pred cccceeeecceecCCCceeeeeeccccceeEEeccccccc---cccccccccccccccccccceeeeeeccccccceEEe
Confidence 12222222333 2444455 88999999988843 2221110
Q ss_pred -----CCceEEEEEeCCCCEEEEEEcC-------------------------------------------CeEEEEECCC
Q 003236 768 -----GNKFHSCVFHPTFPSLLVIGCY-------------------------------------------ETLELWNMTE 799 (837)
Q Consensus 768 -----~~~I~sv~fspdg~~L~sgs~d-------------------------------------------g~I~IwDl~s 799 (837)
.......+++|+...+++...+ |.|.-||+.+
T Consensus 387 pg~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~~~~~~G~l~AiD~~t 466 (573)
T d1kb0a2 387 PGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVA 466 (573)
T ss_dssp SCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTT
T ss_pred ecccCCccccccccCCCcceEEeeccccceeeecccccccccCCCCccccccccccccccccCCCCCCCcccEEEeCCCC
Confidence 0011234678877766664332 2466778888
Q ss_pred CcEEEeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 003236 800 NKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 837 (837)
Q Consensus 800 ~~~~~l~~h~~~V~sla~spdg~~LaSgs~DG~I~IWd 837 (837)
++.+-...+..+...=..+-.+.+|++|+.||.++.||
T Consensus 467 Gk~~W~~~~~~p~~gg~lstagglVF~G~~dg~l~A~D 504 (573)
T d1kb0a2 467 QKAAWSVEHVSPWNGGTLTTAGNVVFQGTADGRLVAYH 504 (573)
T ss_dssp TEEEEEEEESSSCCCCEEEETTTEEEEECTTSEEEEEE
T ss_pred CceEeeecCCCCCCCceEEEcCCEEEEECCCCeEEEEE
Confidence 88772222222222222334678888999999999876
|
| >d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Pseudomonas putida, hk5 [TaxId: 303]
Probab=97.51 E-value=0.013 Score=65.35 Aligned_cols=258 Identities=12% Similarity=0.121 Sum_probs=146.5
Q ss_pred CCEEEEEECCCcEEEEeCCCCeEEEEeccCCCC-eEEEEEcC--CCCEEEEEeC------CCeEEEEEcCCCCceeEEee
Q 003236 567 GKLLATGGHDKKAVLWCTESFTVKSTLEEHTQW-ITDVRFSP--SLSRLATSSA------DRTVRVWDTENPDYSLRTFT 637 (837)
Q Consensus 567 g~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~-I~~l~fsp--dg~~Latgs~------Dg~I~IWDl~~~~~~~~~~~ 637 (837)
+..++.++.|+.|...|..+++.+.....+... -..+.-.| ....++++.. .|.|+-+|..+++..-+...
T Consensus 117 ~~~v~~~~~~g~l~Alda~tG~~~w~~~~~~~~~~~~~~~~p~v~~~~vivg~~~~~~~~~G~v~a~D~~TG~~~W~~~t 196 (560)
T d1kv9a2 117 GDKVYVGTLDGRLIALDAKTGKAIWSQQTTDPAKPYSITGAPRVVKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYT 196 (560)
T ss_dssp BTEEEEECTTSEEEEEETTTCCEEEEEECSCTTSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEES
T ss_pred CCeEEEEeCCCEEEEEECCCCcEEeccCccCcccceeeeeeeeeecCcccccccceeccccceEEEEECCCceEEeeeee
Confidence 446788888999999999999988766432111 01111111 1223444332 36899999999886444332
Q ss_pred cc-----------------------------ccce-EEEEEcCCCCeEEEEEeC------------------CCcEEEEE
Q 003236 638 GH-----------------------------STTV-MSLDFHPSKEDLLCSCDN------------------NSEIRYWS 669 (837)
Q Consensus 638 ~h-----------------------------~~~V-~sl~fspdg~~llasgs~------------------Dg~I~vwD 669 (837)
.. ...+ ..+.+.+....+++..+. ...|...|
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~W~~~s~D~~~~l~y~~tgn~~~~~~~~~~~~~g~n~~s~sivAld 276 (560)
T d1kv9a2 197 VPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIR 276 (560)
T ss_dssp SCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEEC
T ss_pred ccccccCCccccccccccccccccccccccCCCCcccccccccccCeeeecCCCCcccccccccccCCccccceeeEEec
Confidence 11 1112 224566665544432211 24678889
Q ss_pred CCCCeeeeEEecC-CC---------eeEEEEecCCC---EEEEEEcCCeEEEEECCCCeEEEEEcCCC-CCE--------
Q 003236 670 INNGSCAGVFKCQ-SG---------ATQMRFQPRLG---RILAAAIENYISILDVETQVCRLKLQGHK-NQV-------- 727 (837)
Q Consensus 670 l~t~~~i~~~~~~-~~---------i~sl~~sp~g~---~llags~dg~I~iwDl~s~~~~~~l~~h~-~~V-------- 727 (837)
+++++.+..+... .. ..-+.+..+++ .++.+..+|.++++|..+++.+.....-. ...
T Consensus 277 ~~tG~~~W~~Q~~~~D~wd~d~~~~~~l~~~~~~g~~~~~v~~~~k~G~~~~lDr~tG~~i~~~~~~~~~~~~~~d~~~~ 356 (560)
T d1kv9a2 277 PDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLATG 356 (560)
T ss_dssp TTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECTTTC
T ss_pred CCccceeEEEeccccccccccccceeeeeeeecCCceeeeeeecCccceEEEEecCCCcccccccccccccccccChhhc
Confidence 9999988877641 11 11222333332 45567778999999999998876543211 000
Q ss_pred ---------------------------EEEEEcCCCCEEEEEe-C-----------------------------------
Q 003236 728 ---------------------------HSVCWNTSGEYLASVS-D----------------------------------- 744 (837)
Q Consensus 728 ---------------------------~sl~~spdg~~Lasgs-D----------------------------------- 744 (837)
...+++|+..++++.. +
T Consensus 357 ~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yvp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 436 (560)
T d1kv9a2 357 RPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVV 436 (560)
T ss_dssp CEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGC
T ss_pred cccccccccccccceeeeeccccccccccccccCCCCeeecccccccceeeccccccccccccccccCcccccCCCCccc
Confidence 1345667766666543 2
Q ss_pred -CeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE-EeccCCC-CeeEEEEeCCC
Q 003236 745 -ELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDK-LVSSLAASTVN 821 (837)
Q Consensus 745 -g~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fspdg~~L~sgs~dg~I~IwDl~s~~~~-~l~~h~~-~V~sla~spdg 821 (837)
|.|.-||+.++ +.+-..... .....-.+.-.+..+++++.|+.++.||.++|+.+ .+..... .-.-+.+..+|
T Consensus 437 ~G~l~A~D~~tG---k~~W~~~~~-~~~~gg~l~TagglVF~G~~dg~l~A~Da~tGe~LW~~~l~~~~~~~P~ty~~dG 512 (560)
T d1kv9a2 437 SGALLAWDPVKQ---KAAWKVPYP-THWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEALWQFEAQSGIVAAPMTFELAG 512 (560)
T ss_dssp EEEEEEEETTTT---EEEEEEEES-SSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETT
T ss_pred ccceEEEeCCCC---eEeeeccCC-CCCCCceeEECCCEEEEECCCCcEEEEECCCCcEeEEEECCCCccccCEEEEECC
Confidence 34667777776 444333321 12222233445678888999999999999999998 3322111 11114555677
Q ss_pred C-EEEEEE
Q 003236 822 G-MVASAS 828 (837)
Q Consensus 822 ~-~LaSgs 828 (837)
+ ||++.+
T Consensus 513 kqyv~v~a 520 (560)
T d1kv9a2 513 RQYVAIMA 520 (560)
T ss_dssp EEEEEEEE
T ss_pred EEEEEEEe
Confidence 6 555444
|
| >d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylobacterium extorquens [TaxId: 408]
Probab=97.42 E-value=0.028 Score=63.08 Aligned_cols=152 Identities=10% Similarity=0.010 Sum_probs=92.1
Q ss_pred CCEEEEEECCCcEEEEeCCCCeEEEEeccCC----CCeEE-EEEcCCCCEEEEEeC------CCeEEEEEcCCCCceeEE
Q 003236 567 GKLLATGGHDKKAVLWCTESFTVKSTLEEHT----QWITD-VRFSPSLSRLATSSA------DRTVRVWDTENPDYSLRT 635 (837)
Q Consensus 567 g~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~----~~I~~-l~fspdg~~Latgs~------Dg~I~IWDl~~~~~~~~~ 635 (837)
+.+|+.++.|+.|.-.|.++++.+..+.... ..++. ..+ .+..++++.. .|.|+-+|+.+++..-+.
T Consensus 121 ~~~v~~~t~dg~l~Alda~tG~~~w~~~~~d~~~~~~~t~~P~v--~~~~vivg~~~~e~~~~G~v~A~Da~TG~~~W~~ 198 (596)
T d1w6sa_ 121 PALILKTQLDGNVAALNAETGETVWKVENSDIKVGSTLTIAPYV--VKDKVIIGSSGAELGVRGYLTAYDVKTGEQVWRA 198 (596)
T ss_dssp CCEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEE--ETTEEEECCBCGGGTCCCEEEEEETTTCCEEEEE
T ss_pred ceEEEEEeCCCCeEeeccccCceeccccccccccccccccCCcE--ECCeEEEeeccccccccCceEEEECCCCcEEEEe
Confidence 3478888999999999999999987764211 11111 111 1335555543 489999999998864433
Q ss_pred eecc-------------------------------------ccceEEEEEcCCCCeEEEEEeC---------------CC
Q 003236 636 FTGH-------------------------------------STTVMSLDFHPSKEDLLCSCDN---------------NS 663 (837)
Q Consensus 636 ~~~h-------------------------------------~~~V~sl~fspdg~~llasgs~---------------Dg 663 (837)
.... ...-..+++.+..+.+++..+. ..
T Consensus 199 ~t~~~~~~~~~~~~~~~~~~~~g~~~~~~~tw~g~~~~~gg~~~W~~~s~D~~~~lvy~~tg~~~p~~~~~r~g~n~ys~ 278 (596)
T d1w6sa_ 199 YATGPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTM 278 (596)
T ss_dssp ESSSCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSS
T ss_pred eccCCccccccccccccccccccccccccccCCCCceecCCCccccccccccCCCeeecccccccccccccccccccccc
Confidence 2210 0011234556665544432221 24
Q ss_pred cEEEEECCCCeeeeEEecC-C---------CeeEEEE-ecCCC---EEEEEEcCCeEEEEECCCCeEEEEE
Q 003236 664 EIRYWSINNGSCAGVFKCQ-S---------GATQMRF-QPRLG---RILAAAIENYISILDVETQVCRLKL 720 (837)
Q Consensus 664 ~I~vwDl~t~~~i~~~~~~-~---------~i~sl~~-sp~g~---~llags~dg~I~iwDl~s~~~~~~l 720 (837)
.|...|+++++.+..+... . ....+.. ..++. .++....+|.+.++|..+++.+...
T Consensus 279 sivAlD~~TG~~~W~~Q~~~~D~Wd~d~~~~~~l~d~~~~~G~~~~~v~~~~k~G~~~vlDr~tG~~i~~~ 349 (596)
T d1w6sa_ 279 TIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSAN 349 (596)
T ss_dssp EEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred cccccccccccccccccceeccccCCccccceeeeeccccccccccceeccccccceeeecCCCCceeeec
Confidence 5888999999999877641 1 1222222 22332 4666777899999999999877543
|
| >d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Ethanol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=97.38 E-value=0.02 Score=64.18 Aligned_cols=187 Identities=8% Similarity=-0.024 Sum_probs=109.1
Q ss_pred CEEEEEECCCcEEEEeCCCCeEEEEeccCC--------CCe-EEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeEEeec
Q 003236 568 KLLATGGHDKKAVLWCTESFTVKSTLEEHT--------QWI-TDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTG 638 (837)
Q Consensus 568 ~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~--------~~I-~~l~fspdg~~Latgs~Dg~I~IWDl~~~~~~~~~~~~ 638 (837)
..|++++.++.|+-.|.++++.+-++.... ..+ ..+++. +..|+.++.|+.+...|..+++........
T Consensus 69 g~vy~~t~~~~v~AlDa~TG~~lW~~~~~~~~~~~~~~~~~~rg~a~~--~~~i~~~t~~~~l~alda~tG~~~W~~~~~ 146 (582)
T d1flga_ 69 GVIYVTASYSRLFALDAKTGKRLWTYNHRLPDDIRPCCDVVNRGAAIY--GDKVFFGTLDASVVALNKNTGKVVWKKKFA 146 (582)
T ss_dssp TEEEEEETTTEEEEEESSSCCEEEEEECCCCTTCCCSSCSCCCCCEEE--TTEEEEEETTTEEEEEESSSCCEEEEEECS
T ss_pred CEEEEeCCCCeEEEEeCCCCCeEEEEcCCCCCccccccccccCCceEe--CCceEEecCCCeEEEecccccceeeeeccc
Confidence 366677888999999999999987763210 011 122222 356888899999999999998754333221
Q ss_pred cccc------eEEEEEc-CCCCeEEEEE------eCCCcEEEEECCCCeeeeEEecCC----------------------
Q 003236 639 HSTT------VMSLDFH-PSKEDLLCSC------DNNSEIRYWSINNGSCAGVFKCQS---------------------- 683 (837)
Q Consensus 639 h~~~------V~sl~fs-pdg~~llasg------s~Dg~I~vwDl~t~~~i~~~~~~~---------------------- 683 (837)
.... ...+.-. .....+++.+ +..+.|.-+|.++|+.+..+....
T Consensus 147 ~~~~~~~~~~~p~~~~~~~~~~~~~i~g~~~~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~d~~~~g~~~~~~~ 226 (582)
T d1flga_ 147 DHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEEIWMRPFVEGHMGRLNGKDSTVTGDVKAPSW 226 (582)
T ss_dssp CGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCEEEEEESSTTCEEEETTEEEEESSCTTCTTS
T ss_pred CCCccceeecCceEecCCcEeEEEEEeCccccccccccceEEecCCCCcEEEEEeccCCccccccccccccccccccccC
Confidence 1110 0011111 1123333332 234678999999999887764311
Q ss_pred --------------------CeeEEEEecCCCEEEEEEc------------------------CCeEEEEECCCCeEEEE
Q 003236 684 --------------------GATQMRFQPRLGRILAAAI------------------------ENYISILDVETQVCRLK 719 (837)
Q Consensus 684 --------------------~i~sl~~sp~g~~llags~------------------------dg~I~iwDl~s~~~~~~ 719 (837)
....+.+.+..+.++.+.. ...|.-.|.++++.+..
T Consensus 227 ~~~~~~~~~~~~~~~~~gg~vW~~~s~D~~~~~vy~~tgn~~p~~~~~~~~~g~~~~~~dn~ys~SvvAld~~tG~~~W~ 306 (582)
T d1flga_ 227 PDDRNSPTGKVESWSHGGGAPWQSASFDAETNTIIVGAGNPGPWNTWARTAKGGNPHDYDSLYTSGQVGVDPSSGEVKWF 306 (582)
T ss_dssp CBCTTSTTSBCGGGGGCBCCCCSCCEEETTTTEEEEEECCBSSSCGGGGSCTTSCSTTCCCTTCSEEEEECTTTCCEEEE
T ss_pred CCccccccCCccceecCCCcccccceeccccceEEeccCCcccccccccccCCCCcCcccccccceeEEecccchhhhhc
Confidence 0124677778788777652 23588889999998887
Q ss_pred EcC--CCCCE-------EEEEEc-CCCC---EEEEEe-CCeEEEEEcCCCC
Q 003236 720 LQG--HKNQV-------HSVCWN-TSGE---YLASVS-DELVRVWSIGSGS 756 (837)
Q Consensus 720 l~~--h~~~V-------~sl~~s-pdg~---~Lasgs-Dg~I~IwDl~s~~ 756 (837)
+.. |.-.. .-+.+. .++. .++... ++.++++|..+++
T Consensus 307 ~q~~~~D~wd~d~~~~p~l~d~~~~~g~~~~~v~~~~k~g~~~vldr~tG~ 357 (582)
T d1flga_ 307 YQHTPNDAWDFSGNNELVLFDYKAKDGKIVKATAHADRNGFFYVVDRSNGK 357 (582)
T ss_dssp EESSTTCCSCCCCCCCCEEEEEECSSSCEEEEEEEECTTSEEEEEETTTCC
T ss_pred ccccccccccccccccccccccccccccccceeEeecccccEEeecccCCc
Confidence 764 32211 111221 2333 333344 7788888888773
|
| >d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Galactose oxidase, central domain family: Galactose oxidase, central domain domain: Galactose oxidase, central domain species: Fungi (Fusarium sp.) [TaxId: 29916]
Probab=97.31 E-value=0.012 Score=61.48 Aligned_cols=234 Identities=9% Similarity=0.015 Sum_probs=122.1
Q ss_pred CCCCCeEEEEEcCCCCEEEEEECC-CcEEEEeCCCCeEEEEecc-CCCCeEEEEEcCCCCEEEEEeCC------CeEEEE
Q 003236 553 ASTSKVESCHFSPDGKLLATGGHD-KKAVLWCTESFTVKSTLEE-HTQWITDVRFSPSLSRLATSSAD------RTVRVW 624 (837)
Q Consensus 553 ~H~~~V~sl~fSpdg~~Lasgs~D-g~I~VWd~~t~~~~~~l~~-h~~~I~~l~fspdg~~Latgs~D------g~I~IW 624 (837)
.|......+++.+||++++.|+.+ ..+.+||..+..-...-.. ....-..++..+|+++++.++.+ ..+.+|
T Consensus 73 ~~~~~~~~~~~~~~g~i~v~Gg~~~~~~~~yd~~~~~w~~~~~~~~~r~~~~~~~~~dG~v~v~GG~~~~~~~~~~v~~y 152 (387)
T d1k3ia3 73 KHDMFCPGISMDGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVY 152 (387)
T ss_dssp SCCCSSCEEEECTTSCEEEECSSSTTCEEEEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEE
T ss_pred CcccceeEEEEecCCcEEEeecCCCcceeEecCccCcccccccccccccccceeeecCCceeeeccccccccccceeeee
Confidence 344444567889999999988765 5899999887665432211 11223456777899999988753 368999
Q ss_pred EcCCCCceeEEe--------ecccc-----ceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeeEEec--C-----C-
Q 003236 625 DTENPDYSLRTF--------TGHST-----TVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC--Q-----S- 683 (837)
Q Consensus 625 Dl~~~~~~~~~~--------~~h~~-----~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~--~-----~- 683 (837)
|..+........ ..+.. .-..+...+++. +++.+..++.+.++|..+......... . .
T Consensus 153 d~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (387)
T d1k3ia3 153 SPSSKTWTSLPNAKVNPMLTADKQGLYRSDNHAWLFGWKKGS-VFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDA 231 (387)
T ss_dssp ETTTTEEEEETTSCSGGGCCCCTTGGGTTTCSCCEEECGGGC-EEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCC
T ss_pred cCCCCceeecCCCcccccccccccceeeccceeEEEEeCCCC-EEEecCcCCcEEecCcccCcEeeccccccCcccCccc
Confidence 998765321100 00000 001111223333 555666667777777776654332211 0 0
Q ss_pred -CeeEEEEe-cCCCEEEEEEcCC--------eEEEEECCC---CeEEEEEcC---CCCCEEEEEEcCCCCEEEEEe-CC-
Q 003236 684 -GATQMRFQ-PRLGRILAAAIEN--------YISILDVET---QVCRLKLQG---HKNQVHSVCWNTSGEYLASVS-DE- 745 (837)
Q Consensus 684 -~i~sl~~s-p~g~~llags~dg--------~I~iwDl~s---~~~~~~l~~---h~~~V~sl~~spdg~~Lasgs-Dg- 745 (837)
.-.++.+. .+++.+++++... ...++++.. ......... +...-.+....+|++++++|+ +.
T Consensus 232 ~~~~~~~~~~~~g~v~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~dg~i~v~GG~~~~ 311 (387)
T d1k3ia3 232 MCGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRG 311 (387)
T ss_dssp BTCEEEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBSBC
T ss_pred ccccEEEeeccCCceEEEEeccCCCCCcccceeecccccccccCCCceeeccccccccccceeeeccCCeEEEECCcccC
Confidence 11233333 3445555655321 233444332 111111111 122233556668999888866 21
Q ss_pred ----------eEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEc
Q 003236 746 ----------LVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGC 788 (837)
Q Consensus 746 ----------~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fspdg~~L~sgs~ 788 (837)
.+.+||..+.. ...+.........-....+.+||+.++.|+.
T Consensus 312 ~~~~~~~~~~~ve~Ydp~~~~-W~~~~~~~~~R~~Hs~a~l~~dG~v~v~GG~ 363 (387)
T d1k3ia3 312 IPFEDSTPVFTPEIYVPEQDT-FYKQNPNSIVRVYHSISLLLPDGRVFNGGGG 363 (387)
T ss_dssp CTTCCCSBCCCCEEEEGGGTE-EEECCCCSSCCCTTEEEEECTTSCEEEEECC
T ss_pred ccCCCCcEeceEEEEECCCCe-EEECCCCCCcccceEEEEECCCCEEEEEeCC
Confidence 47889987651 1111111111111123456799998888874
|
| >d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Peptidase/esterase 'gauge' domain family: Prolyl oligopeptidase, N-terminal domain domain: Prolyl oligopeptidase, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=97.28 E-value=0.073 Score=56.75 Aligned_cols=224 Identities=8% Similarity=0.009 Sum_probs=125.4
Q ss_pred CCCCeEEEEEcCCCCEEEEEe-C----CCeEEEEEcCCCCceeEEeeccccceEEEEEcCCCCeEEEEEeC---------
Q 003236 596 HTQWITDVRFSPSLSRLATSS-A----DRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDN--------- 661 (837)
Q Consensus 596 h~~~I~~l~fspdg~~Latgs-~----Dg~I~IWDl~~~~~~~~~~~~h~~~V~sl~fspdg~~llasgs~--------- 661 (837)
+.-.+..++++|++++++.+- . -..|+++|+.+++..-..+.. .....++|.+++..++++.-.
T Consensus 123 ~~~~~~~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~~~i~~--~~~~~~~W~~D~~~~~Y~~~~~~~~~~~~~ 200 (430)
T d1qfma1 123 GTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLER--VKFSCMAWTHDGKGMFYNAYPQQDGKSDGT 200 (430)
T ss_dssp SCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEE--ECSCCEEECTTSSEEEEEECCCCSSCCSSS
T ss_pred ccceecceEecCCCCEEEEEeccccCchheeEEeccCcceeccccccc--ccccceEEcCCCCEEEEEEeccccCccccc
Confidence 333455678899999887543 2 247999999998753333321 223578999999988876532
Q ss_pred ------CCcEEEEECCCCee--eeEEecC---CCeeEEEEecCCCEEEEEEcC---C--eEEEEECCCCe--------EE
Q 003236 662 ------NSEIRYWSINNGSC--AGVFKCQ---SGATQMRFQPRLGRILAAAIE---N--YISILDVETQV--------CR 717 (837)
Q Consensus 662 ------Dg~I~vwDl~t~~~--i~~~~~~---~~i~sl~~sp~g~~llags~d---g--~I~iwDl~s~~--------~~ 717 (837)
...|+++.+.+... +..+... ..+..+..+.++++++..... . .+.+.|+.... ..
T Consensus 201 ~~~~~~~~~v~~h~lgt~~~~d~~v~~e~d~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~ 280 (430)
T d1qfma1 201 ETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWV 280 (430)
T ss_dssp CCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCE
T ss_pred ccccCCcceEEEEECCCCccccccccccccCCceEEeeeccCCcceeeEEeeccCCccEEEEEeeCCCccccccccccee
Confidence 12588888876532 2333321 235567788898988765442 2 35555654321 12
Q ss_pred EEEcCCCCCEEEEEEcCCCCEEEEEe----CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEE-cCC--
Q 003236 718 LKLQGHKNQVHSVCWNTSGEYLASVS----DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIG-CYE-- 790 (837)
Q Consensus 718 ~~l~~h~~~V~sl~~spdg~~Lasgs----Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fspdg~~L~sgs-~dg-- 790 (837)
..+......+.-+. +.++.+++... ++.|...++...........+..+...+..-.+...+.+|++.- .++
T Consensus 281 ~~~~~~~~~~~~~~-~~~~~~~~~Tn~~a~~~~L~~~~~~~~~~~~w~~vi~~~~~~~~~~~~~~~~~~lvl~~~~~~~~ 359 (430)
T d1qfma1 281 KLIDNFEGEYDYVT-NEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCYLHDVKN 359 (430)
T ss_dssp EEECSSSSCEEEEE-EETTEEEEEECTTCTTCEEEEEETTBCCGGGCEEEECCCSSCEEEEEEEETTTEEEEEEEETTEE
T ss_pred EeecccccceEEEe-cCCceeecccCcccccceeEEecCCCCccccceEEecccCcceeeeEEEEECCEEEEEEEcCCEe
Confidence 22332333333333 22334444443 35777777776543222233333444455545555555666554 444
Q ss_pred eEEEEECCCCcEEEec-cCCCCeeEEEEeCCCC
Q 003236 791 TLELWNMTENKTLTLS-AHDKLVSSLAASTVNG 822 (837)
Q Consensus 791 ~I~IwDl~s~~~~~l~-~h~~~V~sla~spdg~ 822 (837)
.|+++++.+++...+. ...+.|..+...++..
T Consensus 360 ~l~v~~~~~~~~~~~~~~~~~sv~~~~~~~~~~ 392 (430)
T d1qfma1 360 TLQLHDLATGALLKIFPLEVGSVVGYSGQKKDT 392 (430)
T ss_dssp EEEEEETTTCCEEEEECCCSSEEEEEECCTTCS
T ss_pred EEEEEECCCCcEEEecCCCCceEeeccCCCCCC
Confidence 7899999988876432 3334455454444444
|
| >d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Comamonas testosteroni [TaxId: 285]
Probab=97.26 E-value=0.05 Score=60.56 Aligned_cols=253 Identities=10% Similarity=0.058 Sum_probs=139.6
Q ss_pred EEEEEECCCcEEEEeCCCCeEEEEeccC--CC-CeEEEEEcC--CCCEEEEEeC------CCeEEEEEcCCCCceeEEee
Q 003236 569 LLATGGHDKKAVLWCTESFTVKSTLEEH--TQ-WITDVRFSP--SLSRLATSSA------DRTVRVWDTENPDYSLRTFT 637 (837)
Q Consensus 569 ~Lasgs~Dg~I~VWd~~t~~~~~~l~~h--~~-~I~~l~fsp--dg~~Latgs~------Dg~I~IWDl~~~~~~~~~~~ 637 (837)
.++.++.|+.+...|.++++.+...... .. .+. +.-.| -+..+++++. .|.|+.+|..+++..-+...
T Consensus 130 ~v~~~t~~g~l~alda~tG~~~W~~~~~~~~~~~~~-~~~~p~v~~~~vivg~~~~~~~~~G~v~a~D~~TG~~~W~~~t 208 (573)
T d1kb0a2 130 KVYVGAWDGRLIALDAATGKEVWHQNTFEGQKGSLT-ITGAPRVFKGKVIIGNGGAEYGVRGYITAYDAETGERKWRWFS 208 (573)
T ss_dssp EEEEECTTSEEEEEETTTCCEEEEEETTTTCCSSCB-CCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEES
T ss_pred cEEEEecccceeeeccccccceecccCccCCcceEE-eecceEEEeccEEEeeccccccccceEEEEecCCccceeeeee
Confidence 5677788999999999999988654321 11 111 11111 1234555432 47899999999886433222
Q ss_pred cc------------------------------ccce-EEEEEcCCCCeEEEEEe------------------CCCcEEEE
Q 003236 638 GH------------------------------STTV-MSLDFHPSKEDLLCSCD------------------NNSEIRYW 668 (837)
Q Consensus 638 ~h------------------------------~~~V-~sl~fspdg~~llasgs------------------~Dg~I~vw 668 (837)
.. ...+ ...++.++...+++..+ ....|...
T Consensus 209 ~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~G~~vW~~~s~D~~~g~~~~~~g~~~~~~~~~~~~~~g~~~~~~svvAl 288 (573)
T d1kb0a2 209 VPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVAL 288 (573)
T ss_dssp SCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEE
T ss_pred ccccCCCCCCcccccccccccCCCCceeecCCCCcccccceEchhhCeeeeccCCCccccccccccccccccccceEEEe
Confidence 10 0112 13455666554433211 12357778
Q ss_pred ECCCCeeeeEEecC----------CCeeEEEEecCC---CEEEEEEcCCeEEEEECCCCeEEEEEcCCCCC---------
Q 003236 669 SINNGSCAGVFKCQ----------SGATQMRFQPRL---GRILAAAIENYISILDVETQVCRLKLQGHKNQ--------- 726 (837)
Q Consensus 669 Dl~t~~~i~~~~~~----------~~i~sl~~sp~g---~~llags~dg~I~iwDl~s~~~~~~l~~h~~~--------- 726 (837)
|+++++....+... ..........++ ..++.+..+|.++++|..+++.+.........
T Consensus 289 d~~tG~~~W~~q~~~~d~wd~d~~~~~~l~~~~~~g~~~~~v~~~~k~G~l~~lDr~tGe~~~~~~~~~~~~~~~~~~~~ 368 (573)
T d1kb0a2 289 DPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYDKHG 368 (573)
T ss_dssp CTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEECTTS
T ss_pred cccchheeecccccCcccccccccceeeecceecCCCceeeeeeccccceeEEecccccccccccccccccccccccccc
Confidence 88999888776541 112222233333 34666777899999999999887654321100
Q ss_pred --------------------------EEEEEEcCCCCEEEEEe-CC----------------------------------
Q 003236 727 --------------------------VHSVCWNTSGEYLASVS-DE---------------------------------- 745 (837)
Q Consensus 727 --------------------------V~sl~~spdg~~Lasgs-Dg---------------------------------- 745 (837)
-..++++|+..++++.. +.
T Consensus 369 ~~~~~~~~~~~~~~~~~~pg~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 448 (573)
T d1kb0a2 369 KPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNA 448 (573)
T ss_dssp CEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECS
T ss_pred ceeeeeeccccccceEEeecccCCccccccccCCCcceEEeeccccceeeecccccccccCCCCcccccccccccccccc
Confidence 01246777766666543 32
Q ss_pred ---------eEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE-EeccCCCCeeE-
Q 003236 746 ---------LVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSS- 814 (837)
Q Consensus 746 ---------~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fspdg~~L~sgs~dg~I~IwDl~s~~~~-~l~~h~~~V~s- 814 (837)
.|.-||+.++ +.+-...... +...-..+-.+..|++++.|+.++.||.++|+.+ .+... ..+.+
T Consensus 449 ~p~~~~~~G~l~AiD~~tG---k~~W~~~~~~-p~~gg~lstagglVF~G~~dg~l~A~Da~TGe~LW~~~~~-~~~~~~ 523 (573)
T d1kb0a2 449 EPPKSKPFGRLLAWDPVAQ---KAAWSVEHVS-PWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKLWEAPTG-TGVVAA 523 (573)
T ss_dssp SCCCSCCEEEEEEEETTTT---EEEEEEEESS-SCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECS-SCCCSC
T ss_pred CCCCCCCcccEEEeCCCCC---ceEeeecCCC-CCCCceEEEcCCEEEEECCCCeEEEEECCCCcEeEEEECC-CCcccc
Confidence 3444555554 3333322211 1111123446778888999999999999999998 33211 11111
Q ss_pred -EEEeCCCC-EEEEE
Q 003236 815 -LAASTVNG-MVASA 827 (837)
Q Consensus 815 -la~spdg~-~LaSg 827 (837)
+.|..+|+ ||+..
T Consensus 524 P~ty~~~GkQYv~v~ 538 (573)
T d1kb0a2 524 PSTYMVDGRQYVSVA 538 (573)
T ss_dssp CEEEEETTEEEEEEE
T ss_pred CEEEEECCEEEEEEE
Confidence 44556776 44443
|
| >d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Thermostable phytase (3-phytase) family: Thermostable phytase (3-phytase) domain: Thermostable phytase (3-phytase) species: Bacillus amyloliquefaciens [TaxId: 1390]
Probab=97.17 E-value=0.043 Score=57.00 Aligned_cols=188 Identities=15% Similarity=0.224 Sum_probs=123.2
Q ss_pred CCCCEEEEEECCCcEEEEeCCCCeEEEEeccCCCCeEEEEEcC------CCCEEEEEeC--C--CeEEEEEcCCCCceeE
Q 003236 565 PDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSP------SLSRLATSSA--D--RTVRVWDTENPDYSLR 634 (837)
Q Consensus 565 pdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~I~~l~fsp------dg~~Latgs~--D--g~I~IWDl~~~~~~~~ 634 (837)
|+..+++....++-|++||+. |+.+..+. .+.++.|.... ...-|++++. + .+|.+|.+......+.
T Consensus 38 p~~SlI~gTdK~~Gl~vYdL~-G~~l~~~~--~Gr~NNVDvr~~~~l~~~~~di~vasnR~~~~~~l~~~~id~~~~~l~ 114 (353)
T d1h6la_ 38 PQNSKLITTNKKSGLAVYSLE-GKMLHSYH--TGKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQ 114 (353)
T ss_dssp GGGCEEEEEETTSCCEEEETT-CCEEEECC--SSCEEEEEEEEEEEETTEEEEEEEEEECCTTTCEEEEEEEETTTTEEE
T ss_pred cCccEEEEEcCcCCEEEEcCC-CcEEEecc--cCCcCccccccccccCCcceEEEEEeCCcCcceeEEEEEecCcccccc
Confidence 345577777777779999985 77777664 35666665442 2223455552 2 3688888864443333
Q ss_pred Eeecc-------ccceEEEEE--cCC-CCeEEEEEeCCCcEEEEECC---CC----eeeeEEecCCCeeEEEEecCCCEE
Q 003236 635 TFTGH-------STTVMSLDF--HPS-KEDLLCSCDNNSEIRYWSIN---NG----SCAGVFKCQSGATQMRFQPRLGRI 697 (837)
Q Consensus 635 ~~~~h-------~~~V~sl~f--spd-g~~llasgs~Dg~I~vwDl~---t~----~~i~~~~~~~~i~sl~~sp~g~~l 697 (837)
.+... ...++.+|+ ++. +..+++....+|.+..|.+. .+ +.++.+.....+..|.+....+.|
T Consensus 115 ~~~~~~~p~~~~~~~vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l~~~~~g~v~~~lvr~f~~~~q~EGCVvDde~~~L 194 (353)
T d1h6la_ 115 SITDPNRPIASAIDEVYGFSLYHSQKTGKYYAMVTGKEGEFEQYELNADKNGYISGKKVRAFKMNSQTEGMAADDEYGSL 194 (353)
T ss_dssp ECSCSSSCEECSSSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSSEEEEEEEEEECSSCEEEEEEETTTTEE
T ss_pred cccccccccccccCcceEEEEEecCCCCeEEEEEEcCCceEEEEEEEcCCCCceeeEeeeccCCCCccceEEEeCCCCcE
Confidence 33221 134677776 554 44566677788999888763 22 456677778889999999999999
Q ss_pred EEEEcCCeEEEEECCC-----CeEEEEEcC--CCCCEEEEEEcC--CCC-EEEEEe--CCeEEEEEcCCC
Q 003236 698 LAAAIENYISILDVET-----QVCRLKLQG--HKNQVHSVCWNT--SGE-YLASVS--DELVRVWSIGSG 755 (837)
Q Consensus 698 lags~dg~I~iwDl~s-----~~~~~~l~~--h~~~V~sl~~sp--dg~-~Lasgs--Dg~I~IwDl~s~ 755 (837)
+++-++..|..++.+. ...+....+ ....+..|++-. ++. ||++++ +++..|||....
T Consensus 195 yisEE~~Giw~~~a~~~~~~~~~~i~~~~g~~l~~D~EGlaiy~~~~~~GylivSsQG~n~f~vydr~~~ 264 (353)
T d1h6la_ 195 YIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTPDIEGLTIYYAADGKGYLLASSQGNSSYAIYERQGQ 264 (353)
T ss_dssp EEEETTTEEEEEESSTTSCSCCEEEEECSSSSCCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTT
T ss_pred EEecCccceEEEEeccCCCccceeeecccCccccCCccccEEEEcCCCCeEEEEEcCCCCeEEEEecCCC
Confidence 9999988888887652 233333322 456788887643 333 666665 889999998764
|
| >d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: Serum paraoxonase/arylesterase 1, PON1 domain: Serum paraoxonase/arylesterase 1, PON1 species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]
Probab=96.98 E-value=0.27 Score=50.59 Aligned_cols=184 Identities=8% Similarity=0.060 Sum_probs=104.4
Q ss_pred eEEEEEcCCCCEEEEEeC------------CCeEEEEEcCCCCceeEEeeccc-------cceEEEEE--cCCCCeEEEE
Q 003236 600 ITDVRFSPSLSRLATSSA------------DRTVRVWDTENPDYSLRTFTGHS-------TTVMSLDF--HPSKEDLLCS 658 (837)
Q Consensus 600 I~~l~fspdg~~Latgs~------------Dg~I~IWDl~~~~~~~~~~~~h~-------~~V~sl~f--spdg~~llas 658 (837)
..+|...|+|..+++++. .|.|.++|+.+.......+.... -....+++ .+++...|++
T Consensus 37 ~EDi~~~~dg~~~issg~~~~~~~~~~~~~~G~i~~~dl~~~~~~~~~l~~~~~~~~~~~f~PhGi~l~~~~dg~~~L~v 116 (340)
T d1v04a_ 37 SEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLV 116 (340)
T ss_dssp CCEEEECTTSEEEEEECCCC--------CCCCEEEEEETTSSSCCEEECEEECSSSCGGGCCEEEEEEEECTTCCEEEEE
T ss_pred cceEEECCCCcEEEEecCccCCCCCCCCCCCCeEEEEecCCCCCcceEEEecCCCCCCcceeccceeEEEcCCCcEEEEE
Confidence 345666666655555432 48999999987554333322111 12344443 4456555555
Q ss_pred Ee---CCCcEEEEECCCCe--eee--EEec--CCCeeEEEEecCCCEEEEEEc-----------------CCeEEEEECC
Q 003236 659 CD---NNSEIRYWSINNGS--CAG--VFKC--QSGATQMRFQPRLGRILAAAI-----------------ENYISILDVE 712 (837)
Q Consensus 659 gs---~Dg~I~vwDl~t~~--~i~--~~~~--~~~i~sl~~sp~g~~llags~-----------------dg~I~iwDl~ 712 (837)
.. ...+|.+|++.... ... .+.. ....+.+++..++..+++-.. .+.|..||..
T Consensus 117 vnH~~~~~~ieif~~~~~~~~l~~~~~v~~~~~~~pNDv~~~~~g~fy~Tnd~~~~~~~~~~~e~~~~~~~g~v~~~~~~ 196 (340)
T d1v04a_ 117 VNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPN 196 (340)
T ss_dssp EECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCCSHHHHHHHHHTTCCCEEEEEECSS
T ss_pred EeccCCCceeEEEEEeCCCCeEEEEeecCCccccCccceEEecCCCEEEecCccCcChhhhhhhHhhcCCceeEEEEcCC
Confidence 42 35678888875432 222 1221 234678888888776666211 1234444443
Q ss_pred CCeEEEEEcCCCCCEEEEEEcCCCCEEEEEe--CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEE
Q 003236 713 TQVCRLKLQGHKNQVHSVCWNTSGEYLASVS--DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIG 787 (837)
Q Consensus 713 s~~~~~~l~~h~~~V~sl~~spdg~~Lasgs--Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fspdg~~L~sgs 787 (837)
. ...... .-...+.|+++||+++|+++. .+.|++|++...........+. -....-.+.+.+.+..+.+++
T Consensus 197 ~--~~~~~~-~l~~pNGI~~s~d~~~lyVa~t~~~~i~~y~~~~~~~l~~~~~~~-l~~~pDNi~~d~~~g~lwva~ 269 (340)
T d1v04a_ 197 D--VRVVAE-GFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVLS-FDTLVDNISVDPVTGDLWVGC 269 (340)
T ss_dssp C--EEEEEE-EESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEE-CSSEEEEEEECTTTCCEEEEE
T ss_pred c--eEEEcC-CCCccceeEECCCCCEEEEEeCCCCeEEEEEeCCCcccceEEEec-CCCCCCccEEecCCCEEEEEE
Confidence 3 322222 335688999999999888877 7899999997654333333332 355567788876544455554
|
| >d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Ethanol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=96.67 E-value=0.34 Score=53.60 Aligned_cols=79 Identities=9% Similarity=0.032 Sum_probs=45.8
Q ss_pred CeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE-EeccC-CCCeeEEEEeCCCC
Q 003236 745 ELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAH-DKLVSSLAASTVNG 822 (837)
Q Consensus 745 g~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fspdg~~L~sgs~dg~I~IwDl~s~~~~-~l~~h-~~~V~sla~spdg~ 822 (837)
|.|.-+|+.++ +.+-..... .++..-.++..+..+++++.|+.++.||.++|+++ .+.-. ...-.-+.|..+|+
T Consensus 466 G~l~AiD~~TG---~i~W~~~~~-~p~~~g~lstagglVF~Gt~dg~l~A~Da~TGe~LW~~~~~~~~~~~P~ty~~~G~ 541 (582)
T d1flga_ 466 GSLRAMDPVSG---KVVWEHKEH-LPLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSGIVSPPITWEQDGE 541 (582)
T ss_dssp EEEEEECTTTC---CEEEEEEES-SCCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTE
T ss_pred CeEEEEcCCCC---cEEeecCCC-CCCccceeEEcCCeEEEeCCCCeEEEEECCCCcEeEEEECCCCccccCEEEEECCE
Confidence 34566666665 333333322 22222234456778889999999999999999998 33211 11111256667886
Q ss_pred -EEEEE
Q 003236 823 -MVASA 827 (837)
Q Consensus 823 -~LaSg 827 (837)
||+..
T Consensus 542 qYv~i~ 547 (582)
T d1flga_ 542 QYLGVT 547 (582)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 55544
|
| >d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Thermostable phytase (3-phytase) family: Thermostable phytase (3-phytase) domain: Thermostable phytase (3-phytase) species: Bacillus amyloliquefaciens [TaxId: 1390]
Probab=95.75 E-value=0.64 Score=47.77 Aligned_cols=182 Identities=12% Similarity=0.166 Sum_probs=108.6
Q ss_pred CeEEEEEeCCCcEEEEECCCCeeeeEEecCCCeeEEEEec----CC--CEEEEEEc-C---CeEEEEECCC-CeEEEEEc
Q 003236 653 EDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQP----RL--GRILAAAI-E---NYISILDVET-QVCRLKLQ 721 (837)
Q Consensus 653 ~~llasgs~Dg~I~vwDl~t~~~i~~~~~~~~i~sl~~sp----~g--~~llags~-d---g~I~iwDl~s-~~~~~~l~ 721 (837)
..+++....++-|++||+. |+.+..+.. +.+..+..-. .+ ..+++++. + ..|.+|.+.. ...+..+.
T Consensus 40 ~SlI~gTdK~~Gl~vYdL~-G~~l~~~~~-Gr~NNVDvr~~~~l~~~~~di~vasnR~~~~~~l~~~~id~~~~~l~~~~ 117 (353)
T d1h6la_ 40 NSKLITTNKKSGLAVYSLE-GKMLHSYHT-GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQSIT 117 (353)
T ss_dssp GCEEEEEETTSCCEEEETT-CCEEEECCS-SCEEEEEEEEEEEETTEEEEEEEEEECCTTTCEEEEEEEETTTTEEEECS
T ss_pred ccEEEEEcCcCCEEEEcCC-CcEEEeccc-CCcCccccccccccCCcceEEEEEeCCcCcceeEEEEEecCccccccccc
Confidence 3466666777779999996 777766653 5666555432 12 22445443 2 3677777642 23333333
Q ss_pred CC-------CCCEEEEEE--cCC-CCEEEE-Ee-CCeEEEEEcCCCCC----ceeEEEeecCCCceEEEEEeCCCCEEEE
Q 003236 722 GH-------KNQVHSVCW--NTS-GEYLAS-VS-DELVRVWSIGSGSK----GECIHELSCTGNKFHSCVFHPTFPSLLV 785 (837)
Q Consensus 722 ~h-------~~~V~sl~~--spd-g~~Las-gs-Dg~I~IwDl~s~~~----~~~i~~~~~~~~~I~sv~fspdg~~L~s 785 (837)
.. ...+..+|+ ++. +.+.+. .. +|.+..|.+..... ...++.+. ....+..|++......|++
T Consensus 118 ~~~~p~~~~~~~vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l~~~~~g~v~~~lvr~f~-~~~q~EGCVvDde~~~Lyi 196 (353)
T d1h6la_ 118 DPNRPIASAIDEVYGFSLYHSQKTGKYYAMVTGKEGEFEQYELNADKNGYISGKKVRAFK-MNSQTEGMAADDEYGSLYI 196 (353)
T ss_dssp CSSSCEECSSSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSSEEEEEEEEEE-CSSCEEEEEEETTTTEEEE
T ss_pred ccccccccccCcceEEEEEecCCCCeEEEEEEcCCceEEEEEEEcCCCCceeeEeeeccC-CCCccceEEEeCCCCcEEE
Confidence 21 124667777 554 554444 44 88888887743221 23444444 3568999999999999999
Q ss_pred EEcCCeEEEEECCC-----CcEE-Eec--cCCCCeeEEEEeC--CCC-EEEEEE-CCCcEEEeC
Q 003236 786 IGCYETLELWNMTE-----NKTL-TLS--AHDKLVSSLAAST--VNG-MVASAS-HDKCVKIWK 837 (837)
Q Consensus 786 gs~dg~I~IwDl~s-----~~~~-~l~--~h~~~V~sla~sp--dg~-~LaSgs-~DG~I~IWd 837 (837)
+-.+..|+.++..- +..+ ... .....+..|++-. ++. ||++.+ .|++..|||
T Consensus 197 sEE~~Giw~~~a~~~~~~~~~~i~~~~g~~l~~D~EGlaiy~~~~~~GylivSsQG~n~f~vyd 260 (353)
T d1h6la_ 197 AEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTPDIEGLTIYYAADGKGYLLASSQGNSSYAIYE 260 (353)
T ss_dssp EETTTEEEEEESSTTSCSCCEEEEECSSSSCCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEE
T ss_pred ecCccceEEEEeccCCCccceeeecccCccccCCccccEEEEcCCCCeEEEEEcCCCCeEEEEe
Confidence 99888888787642 2222 121 2356778887654 222 555444 567787775
|
| >d2hu7a1 b.69.7.2 (A:9-321) Acylamino-acid-releasing enzyme, N-terminal donain {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Peptidase/esterase 'gauge' domain family: Acylamino-acid-releasing enzyme, N-terminal donain domain: Acylamino-acid-releasing enzyme, N-terminal donain species: Aeropyrum pernix [TaxId: 56636]
Probab=95.71 E-value=0.87 Score=42.82 Aligned_cols=212 Identities=10% Similarity=0.042 Sum_probs=112.8
Q ss_pred CCCEEEEEECCCcEEEEeCCCCeEEEEeccCCCCeEEEEEcC-CCCEEEEE------eCCCeEEEEEcCCCCceeEEeec
Q 003236 566 DGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSP-SLSRLATS------SADRTVRVWDTENPDYSLRTFTG 638 (837)
Q Consensus 566 dg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~I~~l~fsp-dg~~Latg------s~Dg~I~IWDl~~~~~~~~~~~~ 638 (837)
+.++|+++...|.|.++-+..++.+.--+ .+|.....-. .-.++..+ -+-..|++-++.........-..
T Consensus 25 ~d~ll~~~~seG~vni~~l~g~~~vkLtk---ePI~~~~~Pk~~ldfi~f~RDV~kGkE~Hai~~~Nlk~~GEE~~i~sp 101 (313)
T d2hu7a1 25 GDKLLVVGFSEGSVNAYLYDGGETVKLNR---EPINSVLDPHYGVGRVILVRDVSKGAEQHALFKVNTSRPGEEQRLEAV 101 (313)
T ss_dssp TTEEEEEEEETTEEEEEEESSSSCEECCS---SCCSEECEECTTBSEEEEEEECSTTSCCEEEEEEETTSTTCEEECTTS
T ss_pred CCcEEEEEeccceEEEEEEeCCEEEEEec---ccccCcCCCccCcceEEEEeehhcCcceeeEEEEccCCCCeeeEecCC
Confidence 34478888889999999887776654332 3333221111 11111111 12234555555433322222221
Q ss_pred cccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeeEEecCCC----------eeEEEEe-cCCCEEEEEEc-CCeE
Q 003236 639 HSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSG----------ATQMRFQ-PRLGRILAAAI-ENYI 706 (837)
Q Consensus 639 h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~~~~----------i~sl~~s-p~g~~llags~-dg~I 706 (837)
..-.|.++++. ++.++++|+....+.+|-++.|+.......+.- |..+.+. +....++++.. .|.+
T Consensus 102 k~vRI~S~~yd--dk~vvF~Gased~~~LYviegGklrkL~~vPpFsFVtDI~~d~I~G~g~~~g~~~sfF~adl~SG~l 179 (313)
T d2hu7a1 102 KPMRILSGVDT--GEAVVFTGATEDRVALYALDGGGLRELARLPGFGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGL 179 (313)
T ss_dssp CSBEEEEEEEC--SSCEEEEEECSSCEEEEEEETTEEEEEEEESSCEEEEEEETTEEEEEEEEETTEEEEEEEETTTEEE
T ss_pred ceEEEEEeeec--CceEEEecccCCceEEEEEeCCceeeeccCCCcceEEeccCCeEEEEeeecCCcceEEEEecccCCE
Confidence 12345666654 567888998888899999998887665543221 2222221 22222334443 4555
Q ss_pred EEEECCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEe--CC--eEEEEEcCCCCCceeEEEeec------CCCceEEEEE
Q 003236 707 SILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS--DE--LVRVWSIGSGSKGECIHELSC------TGNKFHSCVF 776 (837)
Q Consensus 707 ~iwDl~s~~~~~~l~~h~~~V~sl~~spdg~~Lasgs--Dg--~I~IwDl~s~~~~~~i~~~~~------~~~~I~sv~f 776 (837)
+|++.. .+.++.....++.+. +++- -+ ...-+|++++.- .-..+.. ....|+-+-+
T Consensus 180 ri~tpk-----------eGS~~~ay~~~gnKV-~sdyEt~gEsywit~D~~s~~y--erve~P~kd~~sy~p~~I~~~~Y 245 (313)
T d2hu7a1 180 RVFDSG-----------EGSFSSASISPGMKV-TAGLETAREARLVTVDPRDGSV--EDLELPSKDFSSYRPTAITWLGY 245 (313)
T ss_dssp EEECCS-----------SEEEEEEEECTTSCE-EEEEEESSCEEEEEECTTTCCE--EECCCSSCHHHHHCCSEEEEEEE
T ss_pred EEecCC-----------CCcccceeEccCcee-eeccCCCCceEEEEEecccCce--eeeecCcccceeecceEEEeeee
Confidence 555444 445555566665555 3332 22 233447665421 1111111 2345666779
Q ss_pred eCCCCEEEEEEcCCeEEEEE
Q 003236 777 HPTFPSLLVIGCYETLELWN 796 (837)
Q Consensus 777 spdg~~L~sgs~dg~I~IwD 796 (837)
.|+++.++++-.||.-.+|.
T Consensus 246 ~Pdd~L~iiakrdG~s~lF~ 265 (313)
T d2hu7a1 246 LPDGRLAVVARREGRSAVFI 265 (313)
T ss_dssp CTTSCEEEEEEETTEEEEEE
T ss_pred CCCCcEEEEEecCCchheee
Confidence 99999889999999888886
|
| >d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: Serum paraoxonase/arylesterase 1, PON1 domain: Serum paraoxonase/arylesterase 1, PON1 species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]
Probab=95.69 E-value=1.4 Score=44.94 Aligned_cols=185 Identities=13% Similarity=0.079 Sum_probs=107.6
Q ss_pred eEEEEEcCCCCEEEEEEC------------CCcEEEEeCCCCeEE-EEe--ccC-----CCCeEEEEE--cCCCC-EEEE
Q 003236 558 VESCHFSPDGKLLATGGH------------DKKAVLWCTESFTVK-STL--EEH-----TQWITDVRF--SPSLS-RLAT 614 (837)
Q Consensus 558 V~sl~fSpdg~~Lasgs~------------Dg~I~VWd~~t~~~~-~~l--~~h-----~~~I~~l~f--spdg~-~Lat 614 (837)
-..|+..|||..+++++. .|.|.++|+.+.+.. ..+ .+. .-....+.+ .+++. +|++
T Consensus 37 ~EDi~~~~dg~~~issg~~~~~~~~~~~~~~G~i~~~dl~~~~~~~~~l~~~~~~~~~~~f~PhGi~l~~~~dg~~~L~v 116 (340)
T d1v04a_ 37 SEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLV 116 (340)
T ss_dssp CCEEEECTTSEEEEEECCCC--------CCCCEEEEEETTSSSCCEEECEEECSSSCGGGCCEEEEEEEECTTCCEEEEE
T ss_pred cceEEECCCCcEEEEecCccCCCCCCCCCCCCeEEEEecCCCCCcceEEEecCCCCCCcceeccceeEEEcCCCcEEEEE
Confidence 346788888877666532 388999998764322 111 111 012233433 44565 3555
Q ss_pred Ee---CCCeEEEEEcCCCCceeEEe---e-ccccceEEEEEcCCCCeEEEEEeC---------------CCcEEEEECCC
Q 003236 615 SS---ADRTVRVWDTENPDYSLRTF---T-GHSTTVMSLDFHPSKEDLLCSCDN---------------NSEIRYWSINN 672 (837)
Q Consensus 615 gs---~Dg~I~IWDl~~~~~~~~~~---~-~h~~~V~sl~fspdg~~llasgs~---------------Dg~I~vwDl~t 672 (837)
.. ...+|.+|++......+... . ......+++++..++. +++|-.. -+...+|....
T Consensus 117 vnH~~~~~~ieif~~~~~~~~l~~~~~v~~~~~~~pNDv~~~~~g~-fy~Tnd~~~~~~~~~~~e~~~~~~~g~v~~~~~ 195 (340)
T d1v04a_ 117 VNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEH-FYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSP 195 (340)
T ss_dssp EECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTE-EEEEESCSCCSHHHHHHHHHTTCCCEEEEEECS
T ss_pred EeccCCCceeEEEEEeCCCCeEEEEeecCCccccCccceEEecCCC-EEEecCccCcChhhhhhhHhhcCCceeEEEEcC
Confidence 43 35689999887554333222 1 1224578888888765 5555210 12334444444
Q ss_pred CeeeeEEecCCCeeEEEEecCCCEEEEEEc-CCeEEEEECCCCe---EEEEEcCCCCCEEEEEEcC-CCCEEEEEeC
Q 003236 673 GSCAGVFKCQSGATQMRFQPRLGRILAAAI-ENYISILDVETQV---CRLKLQGHKNQVHSVCWNT-SGEYLASVSD 744 (837)
Q Consensus 673 ~~~i~~~~~~~~i~sl~~sp~g~~llags~-dg~I~iwDl~s~~---~~~~l~~h~~~V~sl~~sp-dg~~LasgsD 744 (837)
++.......-...+.++++|++++|+++.. .+.|++|++.... ....+ .-...+-.+.+++ +|.+.+++..
T Consensus 196 ~~~~~~~~~l~~pNGI~~s~d~~~lyVa~t~~~~i~~y~~~~~~~l~~~~~~-~l~~~pDNi~~d~~~g~lwva~~p 271 (340)
T d1v04a_ 196 NDVRVVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVL-SFDTLVDNISVDPVTGDLWVGCHP 271 (340)
T ss_dssp SCEEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEE-ECSSEEEEEEECTTTCCEEEEEES
T ss_pred CceEEEcCCCCccceeEECCCCCEEEEEeCCCCeEEEEEeCCCcccceEEEe-cCCCCCCccEEecCCCEEEEEECC
Confidence 444444444567889999999998887775 5789999987542 22222 2345567788876 5666666543
|
| >d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Kelch motif family: Kelch motif domain: Kelch-like ECH-associated protein 1, KEAP1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.66 E-value=0.24 Score=48.45 Aligned_cols=217 Identities=7% Similarity=-0.033 Sum_probs=98.4
Q ss_pred cEEEEeCCCCeEEEE--eccCCCCeEEEEEcCCCCEEEEEeC---------CCeEEEEEcCCCCceeEEeeccc-cceEE
Q 003236 578 KAVLWCTESFTVKST--LEEHTQWITDVRFSPSLSRLATSSA---------DRTVRVWDTENPDYSLRTFTGHS-TTVMS 645 (837)
Q Consensus 578 ~I~VWd~~t~~~~~~--l~~h~~~I~~l~fspdg~~Latgs~---------Dg~I~IWDl~~~~~~~~~~~~h~-~~V~s 645 (837)
.|.+||+++.+-... +......-..+.+ ++.+++.|+. -..+.+||..+.......-.... ....+
T Consensus 20 ~~~~yd~~t~~W~~~~~~p~~R~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~w~~~~~~p~~r~~~~~ 97 (288)
T d1zgka1 20 YLEAYNPSNGTWLRLADLQVPRSGLAGCVV--GGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNRIGV 97 (288)
T ss_dssp CEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCEEEETTEEEECCCEEEEETTTTEEEECCCCSSCCBTCEE
T ss_pred eEEEEECCCCeEEECCCCCCccceeEEEEE--CCEEEEEeCcccCCCCccccchhhhcccccccccccccccceecceec
Confidence 578999988654432 2221212222222 4556666553 13567888876543211110111 11112
Q ss_pred EEEcCCCCeEEEEEeCCC-----cEEEEECCCCeeeeEEecCCC--eeEEEEecCCCEEEEEEcC-----CeEEEEECCC
Q 003236 646 LDFHPSKEDLLCSCDNNS-----EIRYWSINNGSCAGVFKCQSG--ATQMRFQPRLGRILAAAIE-----NYISILDVET 713 (837)
Q Consensus 646 l~fspdg~~llasgs~Dg-----~I~vwDl~t~~~i~~~~~~~~--i~sl~~sp~g~~llags~d-----g~I~iwDl~s 713 (837)
+.+ + +.+++.++.++ .+..+|..+............ -.++... ++..++.++.+ ..+..||..+
T Consensus 98 ~~~--~-~~i~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~-~~~~~~~GG~~~~~~~~~~~~~d~~~ 173 (288)
T d1zgka1 98 GVI--D-GHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVL-NRLLYAVGGFDGTNRLNSAECYYPER 173 (288)
T ss_dssp EEE--T-TEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEE-TTEEEEECCBCSSCBCCCEEEEETTT
T ss_pred ccc--c-eeeEEecceecccccceeeeeccccCccccccccccccccceeeee-eecceEecCcccccccceEEEeeccc
Confidence 222 2 34555554333 345567666543322221111 1222222 33455555443 4678888887
Q ss_pred CeEEEEEcC-CCCCEEEEEEcCCCCEEEEEe-C-----CeEEEEEcCCCCCceeEEEeecCCCce-EEEEEeCCCCEEEE
Q 003236 714 QVCRLKLQG-HKNQVHSVCWNTSGEYLASVS-D-----ELVRVWSIGSGSKGECIHELSCTGNKF-HSCVFHPTFPSLLV 785 (837)
Q Consensus 714 ~~~~~~l~~-h~~~V~sl~~spdg~~Lasgs-D-----g~I~IwDl~s~~~~~~i~~~~~~~~~I-~sv~fspdg~~L~s 785 (837)
.+....-.. ......+++.. ++.+++.++ + ..+.+||..+.. ............ .+++. .+++.+++
T Consensus 174 ~~~~~~~~~~~~~~~~~~~~~-~~~i~i~GG~~~~~~~~~~~~~~~~~~~---~~~~~~~p~~r~~~~~~~-~~~~l~v~ 248 (288)
T d1zgka1 174 NEWRMITAMNTIRSGAGVCVL-HNCIYAAGGYDGQDQLNSVERYDVETET---WTFVAPMKHRRSALGITV-HQGRIYVL 248 (288)
T ss_dssp TEEEECCCCSSCCBSCEEEEE-TTEEEEECCBCSSSBCCCEEEEETTTTE---EEECCCCSSCCBSCEEEE-ETTEEEEE
T ss_pred cccccccccccccccccccce-eeeEEEecCccccccccceeeeeeccee---eecccCccCcccceEEEE-ECCEEEEE
Confidence 654322111 11111233333 344455443 3 256777776642 111111111111 22333 35666777
Q ss_pred EEcCC-----eEEEEECCCCcEEEe
Q 003236 786 IGCYE-----TLELWNMTENKTLTL 805 (837)
Q Consensus 786 gs~dg-----~I~IwDl~s~~~~~l 805 (837)
|+.++ .|.+||+.+++...+
T Consensus 249 GG~~~~~~~~~v~~yd~~~~~W~~~ 273 (288)
T d1zgka1 249 GGYDGHTFLDSVECYDPDTDTWSEV 273 (288)
T ss_dssp CCBCSSCBCCEEEEEETTTTEEEEE
T ss_pred ecCCCCeecceEEEEECCCCEEEEC
Confidence 66544 588999998775533
|
| >d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Soluble quinoprotein glucose dehydrogenase family: Soluble quinoprotein glucose dehydrogenase domain: Soluble quinoprotein glucose dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=95.12 E-value=2.3 Score=44.91 Aligned_cols=55 Identities=13% Similarity=0.148 Sum_probs=38.2
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCcee-EEee------ccccceEEEEEcCC
Q 003236 597 TQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSL-RTFT------GHSTTVMSLDFHPS 651 (837)
Q Consensus 597 ~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~~~~~~-~~~~------~h~~~V~sl~fspd 651 (837)
-...++|+|.||+++|++--.+|.|++++..++.... ..+. .-......|+|+|+
T Consensus 26 L~~P~~la~~pdg~llVter~~G~i~~v~~~~g~~~~i~~~~~~~~~~~ge~GLLgia~~Pd 87 (450)
T d1crua_ 26 LNKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPD 87 (450)
T ss_dssp CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTT
T ss_pred CCCceEEEEeCCCeEEEEEecCCEEEEEECCCCcEeecccCCccccccCCCCceeeEEeCCC
Confidence 3467899999999988776557999999877654321 1111 11245788999985
|
| >d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nucleoporin domain family: Nucleoporin domain domain: Nucleoporin NUP159 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.85 E-value=0.33 Score=50.60 Aligned_cols=173 Identities=15% Similarity=0.138 Sum_probs=102.5
Q ss_pred CeEEEEEcCCCCEEEEEECCCcEEEEeCC-------------CCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEE
Q 003236 557 KVESCHFSPDGKLLATGGHDKKAVLWCTE-------------SFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRV 623 (837)
Q Consensus 557 ~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~-------------t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~I 623 (837)
...-+++++...+|+.|+.++ ++|..++ ..+....+ ..|..++|+.+ .|+.. .++.+..
T Consensus 38 ~~~LLAVsn~~GLl~aa~~~~-l~V~~t~~l~~~~~~~~~~~~~~~~~~i----p~v~~vafs~d--~l~v~-~~~~l~~ 109 (381)
T d1xipa_ 38 SLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWEKEI----PDVIFVCFHGD--QVLVS-TRNALYS 109 (381)
T ss_dssp CCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEEEEC----TTEEEEEEETT--EEEEE-ESSEEEE
T ss_pred ccceEEEeCCCCEEEEECCCE-EEEEEHHHHHHHhhccCCCCcceeccCC----CCeEEEEeeCC--EEEEE-eCCCEEE
Confidence 355688888777888888775 5666522 11122222 25889999755 45554 4566888
Q ss_pred EEcCCCCceeEEeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeeE------EecCCCeeEEEEecCCCEE
Q 003236 624 WDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGV------FKCQSGATQMRFQPRLGRI 697 (837)
Q Consensus 624 WDl~~~~~~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~------~~~~~~i~sl~~sp~g~~l 697 (837)
++...-.. .........++..+.+.|. .++.+..++.+.++++..++.... +.....+.+++|++.+..+
T Consensus 110 ~~~~~l~~-~~~~~~~~~~~~~~~~~p~---~~~l~~~~~~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~v~ws~kgkq~ 185 (381)
T d1xipa_ 110 LDLEELSE-FRTVTSFEKPVFQLKNVNN---TLVILNSVNDLSALDLRTKSTKQLAQNVTSFDVTNSQLAVLLKDRSFQS 185 (381)
T ss_dssp EESSSTTC-EEEEEECSSCEEEEEECSS---EEEEEETTSEEEEEETTTCCEEEEEESEEEEEECSSEEEEEETTSCEEE
T ss_pred EEeecccc-ccccccccccccceecCCc---eeEEEecCCCEEEEEeccCccccccCCcceEEecCCceEEEEeCCcEEE
Confidence 88776432 3333334567888888875 344566689999999988764332 2234667778887777777
Q ss_pred EEEEcCCeEEE-EECCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEE
Q 003236 698 LAAAIENYISI-LDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASV 742 (837)
Q Consensus 698 lags~dg~I~i-wDl~s~~~~~~l~~h~~~V~sl~~spdg~~Lasg 742 (837)
+++..+. ..+ -++.....+..-......|.+|.|-.+..++++-
T Consensus 186 v~~~g~~-~q~k~~i~~~~~~~~p~~~~~~v~sI~WL~~~~F~vvy 230 (381)
T d1xipa_ 186 FAWRNGE-MEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVF 230 (381)
T ss_dssp EEEETTE-EEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEE
T ss_pred EEeCCCc-eeeccCCCCccccCCCcCCCcceeEEEEecCceEEEEE
Confidence 6663322 111 1111110000001134468889998777776654
|
| >d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Kelch motif family: Kelch motif domain: Kelch-like ECH-associated protein 1, KEAP1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.40 E-value=0.53 Score=45.87 Aligned_cols=202 Identities=6% Similarity=-0.094 Sum_probs=91.5
Q ss_pred eEEEEEcCCCCceeE-EeeccccceEEEEEcCCCCeEEEEEeC---------CCcEEEEECCCCeeeeEEecCC-CeeEE
Q 003236 620 TVRVWDTENPDYSLR-TFTGHSTTVMSLDFHPSKEDLLCSCDN---------NSEIRYWSINNGSCAGVFKCQS-GATQM 688 (837)
Q Consensus 620 ~I~IWDl~~~~~~~~-~~~~h~~~V~sl~fspdg~~llasgs~---------Dg~I~vwDl~t~~~i~~~~~~~-~i~sl 688 (837)
.|.+||+.+...... .+......- +++.. ++.+++.|+. -..+.+||..+.+....-.... .....
T Consensus 20 ~~~~yd~~t~~W~~~~~~p~~R~~~-~~~~~--~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~w~~~~~~p~~r~~~~ 96 (288)
T d1zgka1 20 YLEAYNPSNGTWLRLADLQVPRSGL-AGCVV--GGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNRIG 96 (288)
T ss_dssp CEEEEETTTTEEEECCCCSSCCBSC-EEEEE--TTEEEEECCEEEETTEEEECCCEEEEETTTTEEEECCCCSSCCBTCE
T ss_pred eEEEEECCCCeEEECCCCCCcccee-EEEEE--CCEEEEEeCcccCCCCccccchhhhcccccccccccccccceeccee
Confidence 578999988654221 111111111 22222 2456656542 2367888888766544322211 11111
Q ss_pred EEecCCCEEEEEEcC-----CeEEEEECCCCeEEEEEcCCCC-CEEEEEEcCCCCEEEEEe-C-----CeEEEEEcCCCC
Q 003236 689 RFQPRLGRILAAAIE-----NYISILDVETQVCRLKLQGHKN-QVHSVCWNTSGEYLASVS-D-----ELVRVWSIGSGS 756 (837)
Q Consensus 689 ~~sp~g~~llags~d-----g~I~iwDl~s~~~~~~l~~h~~-~V~sl~~spdg~~Lasgs-D-----g~I~IwDl~s~~ 756 (837)
+...+++.++.++.+ ..+..+|..+..-...-..... .-.++... ++.+++.++ + ..+..||..+..
T Consensus 97 ~~~~~~~i~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~-~~~~~~~GG~~~~~~~~~~~~~d~~~~~ 175 (288)
T d1zgka1 97 VGVIDGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVL-NRLLYAVGGFDGTNRLNSAECYYPERNE 175 (288)
T ss_dssp EEEETTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEE-TTEEEEECCBCSSCBCCCEEEEETTTTE
T ss_pred ccccceeeEEecceecccccceeeeeccccCccccccccccccccceeeee-eecceEecCcccccccceEEEeeccccc
Confidence 222244555554433 2455677776543322111111 11122222 344444443 2 257888876641
Q ss_pred CceeEEEeecC--CCceEEEEEeCCCCEEEEEEcCC-----eEEEEECCCCcEEEeccCC-CCe-eEEEEeCCCCEEEEE
Q 003236 757 KGECIHELSCT--GNKFHSCVFHPTFPSLLVIGCYE-----TLELWNMTENKTLTLSAHD-KLV-SSLAASTVNGMVASA 827 (837)
Q Consensus 757 ~~~~i~~~~~~--~~~I~sv~fspdg~~L~sgs~dg-----~I~IwDl~s~~~~~l~~h~-~~V-~sla~spdg~~LaSg 827 (837)
.. ..... .....+++.. ++..++.++.++ .+.+||..+.+...+.... ... .+++ ..++++++.|
T Consensus 176 ---~~-~~~~~~~~~~~~~~~~~-~~~i~i~GG~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~-~~~~~l~v~G 249 (288)
T d1zgka1 176 ---WR-MITAMNTIRSGAGVCVL-HNCIYAAGGYDGQDQLNSVERYDVETETWTFVAPMKHRRSALGIT-VHQGRIYVLG 249 (288)
T ss_dssp ---EE-ECCCCSSCCBSCEEEEE-TTEEEEECCBCSSSBCCCEEEEETTTTEEEECCCCSSCCBSCEEE-EETTEEEEEC
T ss_pred ---cc-cccccccccccccccce-eeeEEEecCccccccccceeeeeecceeeecccCccCcccceEEE-EECCEEEEEe
Confidence 11 11111 1111222232 344555554443 6788898887766543221 112 1233 3367888888
Q ss_pred ECCC
Q 003236 828 SHDK 831 (837)
Q Consensus 828 s~DG 831 (837)
+.++
T Consensus 250 G~~~ 253 (288)
T d1zgka1 250 GYDG 253 (288)
T ss_dssp CBCS
T ss_pred cCCC
Confidence 7654
|
| >d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Soluble quinoprotein glucose dehydrogenase family: Soluble quinoprotein glucose dehydrogenase domain: Soluble quinoprotein glucose dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=93.72 E-value=5 Score=42.12 Aligned_cols=60 Identities=18% Similarity=0.201 Sum_probs=42.0
Q ss_pred CCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEE--ec------cCCCCeEEEEEcCC---CCEEEE
Q 003236 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKST--LE------EHTQWITDVRFSPS---LSRLAT 614 (837)
Q Consensus 555 ~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~--l~------~h~~~I~~l~fspd---g~~Lat 614 (837)
-..-++|+|.|||++|++--.+|+|++++..++..... +. .-......|+|+|+ ..+|+.
T Consensus 26 L~~P~~la~~pdg~llVter~~G~i~~v~~~~g~~~~i~~~~~~~~~~~ge~GLLgia~~Pdf~~n~~iYv 96 (450)
T d1crua_ 26 LNKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYI 96 (450)
T ss_dssp CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEE
T ss_pred CCCceEEEEeCCCeEEEEEecCCEEEEEECCCCcEeecccCCccccccCCCCceeeEEeCCCCccCCEEEE
Confidence 34577999999999888765579999998777654422 21 12356789999985 444444
|
| >d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nucleoporin domain family: Nucleoporin domain domain: Nucleoporin NUP159 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.15 E-value=2.6 Score=43.48 Aligned_cols=178 Identities=11% Similarity=0.047 Sum_probs=100.4
Q ss_pred cceEEEEEcCCCCeEEEEEeCCCcEEEEECC-----------CCeeeeEEecCCCeeEEEEecCCCEEEEEEcCCeEEEE
Q 003236 641 TTVMSLDFHPSKEDLLCSCDNNSEIRYWSIN-----------NGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISIL 709 (837)
Q Consensus 641 ~~V~sl~fspdg~~llasgs~Dg~I~vwDl~-----------t~~~i~~~~~~~~i~sl~~sp~g~~llags~dg~I~iw 709 (837)
....-++++.... ++++|+.++ +.|..+. .......... ..|..++|+.+ . ++...++.+..+
T Consensus 37 ~~~~LLAVsn~~G-Ll~aa~~~~-l~V~~t~~l~~~~~~~~~~~~~~~~~~i-p~v~~vafs~d--~-l~v~~~~~l~~~ 110 (381)
T d1xipa_ 37 ASLQNLDISNSKS-LFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWEKEI-PDVIFVCFHGD--Q-VLVSTRNALYSL 110 (381)
T ss_dssp SCCBCEEEETTTT-EEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEEEEC-TTEEEEEEETT--E-EEEEESSEEEEE
T ss_pred cccceEEEeCCCC-EEEEECCCE-EEEEEHHHHHHHhhccCCCCcceeccCC-CCeEEEEeeCC--E-EEEEeCCCEEEE
Confidence 3455677777655 555666554 6666532 1122222222 36888899765 3 444566778888
Q ss_pred ECCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCeEEEEEcCCCCCceeE---EEeecCCCceEEEEEeCCCCEEEEE
Q 003236 710 DVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECI---HELSCTGNKFHSCVFHPTFPSLLVI 786 (837)
Q Consensus 710 Dl~s~~~~~~l~~h~~~V~sl~~spdg~~LasgsDg~I~IwDl~s~~~~~~i---~~~~~~~~~I~sv~fspdg~~L~sg 786 (837)
+...-........-..++..+.++|.. .++...++.+.++++..+...... ..+ .-...+.+++|++.+..++++
T Consensus 111 ~~~~l~~~~~~~~~~~~~~~~~~~p~~-~~l~~~~~~~~~~~l~~~~~~~~~~~v~~~-~~~~~~~~v~ws~kgkq~v~~ 188 (381)
T d1xipa_ 111 DLEELSEFRTVTSFEKPVFQLKNVNNT-LVILNSVNDLSALDLRTKSTKQLAQNVTSF-DVTNSQLAVLLKDRSFQSFAW 188 (381)
T ss_dssp ESSSTTCEEEEEECSSCEEEEEECSSE-EEEEETTSEEEEEETTTCCEEEEEESEEEE-EECSSEEEEEETTSCEEEEEE
T ss_pred EeeccccccccccccccccceecCCce-eEEEecCCCEEEEEeccCccccccCCcceE-EecCCceEEEEeCCcEEEEEe
Confidence 887654444444445678888888753 344444999999999887432211 111 123567888888888877776
Q ss_pred EcCCeEEE-EECCCCcEE-EeccCCCCeeEEEEeCCCCEEEEE
Q 003236 787 GCYETLEL-WNMTENKTL-TLSAHDKLVSSLAASTVNGMVASA 827 (837)
Q Consensus 787 s~dg~I~I-wDl~s~~~~-~l~~h~~~V~sla~spdg~~LaSg 827 (837)
..+. +.+ -++.....+ ........|.+|.|-.+..++++-
T Consensus 189 ~g~~-~q~k~~i~~~~~~~~p~~~~~~v~sI~WL~~~~F~vvy 230 (381)
T d1xipa_ 189 RNGE-MEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVF 230 (381)
T ss_dssp ETTE-EEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEE
T ss_pred CCCc-eeeccCCCCccccCCCcCCCcceeEEEEecCceEEEEE
Confidence 4332 221 122211111 111234467788887666555544
|
| >d2hu7a1 b.69.7.2 (A:9-321) Acylamino-acid-releasing enzyme, N-terminal donain {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Peptidase/esterase 'gauge' domain family: Acylamino-acid-releasing enzyme, N-terminal donain domain: Acylamino-acid-releasing enzyme, N-terminal donain species: Aeropyrum pernix [TaxId: 56636]
Probab=91.19 E-value=6 Score=36.96 Aligned_cols=163 Identities=12% Similarity=0.056 Sum_probs=88.3
Q ss_pred cEEEEeCCCCeEEEEeccCC-CCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeEEeeccccceE--------EEEE
Q 003236 578 KAVLWCTESFTVKSTLEEHT-QWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVM--------SLDF 648 (837)
Q Consensus 578 ~I~VWd~~t~~~~~~l~~h~-~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~--------sl~f 648 (837)
.|++.+++.......+.... -.|.++++. +.+..++|+....+.+|-++.++.........-+.|+ .+.+
T Consensus 83 ai~~~Nlk~~GEE~~i~spk~vRI~S~~yd-dk~vvF~Gased~~~LYviegGklrkL~~vPpFsFVtDI~~d~I~G~g~ 161 (313)
T d2hu7a1 83 ALFKVNTSRPGEEQRLEAVKPMRILSGVDT-GEAVVFTGATEDRVALYALDGGGLRELARLPGFGFVSDIRGDLIAGLGF 161 (313)
T ss_dssp EEEEEETTSTTCEEECTTSCSBEEEEEEEC-SSCEEEEEECSSCEEEEEEETTEEEEEEEESSCEEEEEEETTEEEEEEE
T ss_pred eEEEEccCCCCeeeEecCCceEEEEEeeec-CceEEEecccCCceEEEEEeCCceeeeccCCCcceEEeccCCeEEEEee
Confidence 45555655323333443333 567777775 4567888888888999999877632211111122333 3333
Q ss_pred cCCCCeEEEEEeC-CCcEEEEECCCCeeeeEEecCCCeeEEEEecCCCEEEEEEc---CCeEEEEECCCCeEEEE-EcC-
Q 003236 649 HPSKEDLLCSCDN-NSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAI---ENYISILDVETQVCRLK-LQG- 722 (837)
Q Consensus 649 spdg~~llasgs~-Dg~I~vwDl~t~~~i~~~~~~~~i~sl~~sp~g~~llags~---dg~I~iwDl~s~~~~~~-l~~- 722 (837)
..-+..-++++.- .|.+++++...|. ++...+.+. +.+++.-+ +....-+|+++++.... +..
T Consensus 162 ~~g~~~sfF~adl~SG~lri~tpkeGS----------~~~ay~~~g-nKV~sdyEt~gEsywit~D~~s~~yerve~P~k 230 (313)
T d2hu7a1 162 FGGGRVSLFTSNLSSGGLRVFDSGEGS----------FSSASISPG-MKVTAGLETAREARLVTVDPRDGSVEDLELPSK 230 (313)
T ss_dssp EETTEEEEEEEETTTEEEEEECCSSEE----------EEEEEECTT-SCEEEEEEESSCEEEEEECTTTCCEEECCCSSC
T ss_pred ecCCcceEEEEecccCCEEEecCCCCc----------ccceeEccC-ceeeeccCCCCceEEEEEecccCceeeeecCcc
Confidence 2222222333333 5555555554433 333444444 33333332 22333568887654332 211
Q ss_pred -----CCCCEEEEEEcCCCCEEEEEe-CCeEEEEEc
Q 003236 723 -----HKNQVHSVCWNTSGEYLASVS-DELVRVWSI 752 (837)
Q Consensus 723 -----h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl 752 (837)
..-.|+-+-+.|++++++.+. ||.-++|+-
T Consensus 231 d~~sy~p~~I~~~~Y~Pdd~L~iiakrdG~s~lF~n 266 (313)
T d2hu7a1 231 DFSSYRPTAITWLGYLPDGRLAVVARREGRSAVFID 266 (313)
T ss_dssp HHHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEET
T ss_pred cceeecceEEEeeeeCCCCcEEEEEecCCchheeec
Confidence 123566777999999977777 999999873
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| >d1wp5a_ b.68.10.1 (A:) Topoisomerase IV subunit A, ParC, C-terminal domain {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
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class: All beta proteins fold: 6-bladed beta-propeller superfamily: GyrA/ParC C-terminal domain-like family: GyrA/ParC C-terminal domain-like domain: Topoisomerase IV subunit A, ParC, C-terminal domain species: Bacillus stearothermophilus [TaxId: 1422]
Probab=91.12 E-value=8.3 Score=38.44 Aligned_cols=232 Identities=8% Similarity=0.068 Sum_probs=128.7
Q ss_pred CCCCEEEEEECCCcEEEEeCCCCe----EEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEc---CCCC-----ce
Q 003236 565 PDGKLLATGGHDKKAVLWCTESFT----VKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDT---ENPD-----YS 632 (837)
Q Consensus 565 pdg~~Lasgs~Dg~I~VWd~~t~~----~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl---~~~~-----~~ 632 (837)
++...+++-+.+|.|+--++++.+ .-..++ ..+.+..+........|+.-+..|.++...+ .... .+
T Consensus 3 ~~E~v~v~lS~~GyiKR~~~~~~~~~~~~~~~~k-~~D~v~~~~~~~t~d~ll~fT~~Grvy~l~v~eiP~~~~~s~G~p 81 (323)
T d1wp5a_ 3 ASEDVIVTVTKDGYVKRTSLRSYAASNGQDFAMK-DTDRLLAMLEMNTKDVLLLFTNKGNYLYCPVHELPDIRWKDLGQH 81 (323)
T ss_dssp SCCEEEEEEETTCEEEEEEHHHHHHTTTCCCCCC-TTCCEEEEEEEETTSEEEEEETTSEEEEEEGGGSCBCCTTSCCEE
T ss_pred CCCCEEEEEeCCCeEEEeeHHHhhhcCCCCCccc-CCceEEEEEEEcCCCEEEEEecCCEEEEEeeccCccccccccccc
Confidence 566778888889988766543210 001122 2345555555445556666677887665543 3211 11
Q ss_pred eEEee--ccccceEE-EEEcC-CCCeEEEEEeCCCcEEEEECCCC--------eeeeEEecCCCeeEEEEecCCCEEEEE
Q 003236 633 LRTFT--GHSTTVMS-LDFHP-SKEDLLCSCDNNSEIRYWSINNG--------SCAGVFKCQSGATQMRFQPRLGRILAA 700 (837)
Q Consensus 633 ~~~~~--~h~~~V~s-l~fsp-dg~~llasgs~Dg~I~vwDl~t~--------~~i~~~~~~~~i~sl~~sp~g~~llag 700 (837)
+..+. .....|.. +...+ .....++..+..|.++..++... .....+.....+..+.+......++.+
T Consensus 82 i~~ll~l~~~e~ii~~~~~~~~~~~~~l~~~Tk~G~iKr~~l~~f~~~~~~~g~~~i~L~~~D~l~~v~~~~~~~~i~l~ 161 (323)
T d1wp5a_ 82 IANIIPIDRDEEIIKAIPINDFELNGYFLFVTRNGMVKKTELKHYKAQRYSKPLTGINLKNDDQVVDVHLTDGMNELFLV 161 (323)
T ss_dssp GGGTSCCCTTCCEEEEEEESCTTSSCEEEEEETTSEEEEEEGGGGCCSCCSSCEECSCCCTTCCEEEEEEECSCSEEEEE
T ss_pred ceeeecccCCcceEEEeeccccccceeEEEEeehhheeeccHHHhhhhhccchhhhccccccccccceeccCCCeEEEEE
Confidence 11111 12233433 33332 12335557778999999987432 122233445667788888778899999
Q ss_pred EcCCeEEEEECCCC---------eEEEEEcCCCCCEEE-EEEcCCCCEEEEEe-CCeEEEEEcCCCCC----ce---eEE
Q 003236 701 AIENYISILDVETQ---------VCRLKLQGHKNQVHS-VCWNTSGEYLASVS-DELVRVWSIGSGSK----GE---CIH 762 (837)
Q Consensus 701 s~dg~I~iwDl~s~---------~~~~~l~~h~~~V~s-l~~spdg~~Lasgs-Dg~I~IwDl~s~~~----~~---~i~ 762 (837)
+..|.+..|+...- .....+. ....|.+ ..+.+++..|++.+ .|..+...+..... .. .+.
T Consensus 162 t~~G~~lrf~~~~vr~~gr~a~GV~~ikL~-~~D~vv~~~~~~~~~~~ll~~T~~G~gKr~~~~e~~~~~RggkGv~~~k 240 (323)
T d1wp5a_ 162 THNGYALWFDESEVSIVGVRAAGVKGMNLK-EGDYIVSGQLITSKDESIVVATQRGAVKKMKLTEFEKATRAKRGVVILR 240 (323)
T ss_dssp ETTSEEEEEEGGGSCBCCSSCCCEECCCCC-TTCCEEEEEEECCTTCEEEEEETTSEEEEEEGGGSCCCCTTSCCEECSC
T ss_pred EecceeeEeecccccccCcccccccccccc-cccccchhhhccccccceeeeeeeheeecccchhhcccccccccccccc
Confidence 99999999987532 1222232 2334444 44555666666666 78777766543211 01 111
Q ss_pred EeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECC
Q 003236 763 ELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMT 798 (837)
Q Consensus 763 ~~~~~~~~I~sv~fspdg~~L~sgs~dg~I~IwDl~ 798 (837)
........+..+....+...|+..+..|.+.-.++.
T Consensus 241 ~~k~~~~~v~~~~~~~~~d~l~l~T~~g~~~r~~~~ 276 (323)
T d1wp5a_ 241 ELKANPHRISGFVVAQDSDTIYLQTEKSFIETIKVG 276 (323)
T ss_dssp CCSSSCCCEEEEEEECTTCEEEEEETTSCEEEEEGG
T ss_pred ccccccceeeeeEecCCCCEEEEEeCCCEEEEEEhh
Confidence 222233456666666677778888888876655543
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| >d1uuja_ a.221.1.1 (A:) Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
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class: All alpha proteins fold: Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-terminal domain superfamily: Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-terminal domain family: Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-terminal domain domain: Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=90.47 E-value=0.052 Score=42.64 Aligned_cols=33 Identities=21% Similarity=0.334 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHhcCCCCC
Q 003236 9 DKMLDVYIYDYLLKRKLHASAKAFQTEGKVSTD 41 (837)
Q Consensus 9 ~~~l~~yiydyl~k~~~~~~A~~~~~e~~~~~~ 41 (837)
++=||.-|++||..+|+.++|.+|.+|+.++.+
T Consensus 7 ~eeL~kaI~~Yl~~~~~~~~~~~l~~e~~l~~~ 39 (76)
T d1uuja_ 7 RDELNRAIADYLRSNGYEEAYSVFKKEAELDMN 39 (76)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHTTCCCC
T ss_pred HHHHHHHHHHHHHHCCcHHHHHHHHHHHCCCCC
Confidence 346899999999999999999999999988643
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| >d1jtdb_ b.69.5.2 (B:) beta-lactamase inhibitor protein-II, BLIP-II {Streptomyces exfoliatus [TaxId: 1905]} | Back information, alignment and structure |
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class: All beta proteins fold: 7-bladed beta-propeller superfamily: RCC1/BLIP-II family: beta-lactamase inhibitor protein-II, BLIP-II domain: beta-lactamase inhibitor protein-II, BLIP-II species: Streptomyces exfoliatus [TaxId: 1905]
Probab=89.85 E-value=8.9 Score=36.74 Aligned_cols=218 Identities=11% Similarity=-0.002 Sum_probs=106.0
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeEEeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeee
Q 003236 597 TQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCA 676 (837)
Q Consensus 597 ~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i 676 (837)
...|..|+-.. .+.+... ||.|+.|-...... +-.-......|..++.-. .+.++ - .|+.++.|.....-..
T Consensus 25 ~~~i~~va~G~--~h~~al~-dG~v~~wG~N~~GQ-lG~~~~~~~~v~~v~~G~--~~~~a-l-~dg~v~~wG~~~~gq~ 96 (273)
T d1jtdb_ 25 QSGVDAIAGGY--FHGLALK-GGKVLGWGANLNGQ-LTMPAATQSGVDAIAAGN--YHSLA-L-KDGEVIAWGGNEDGQT 96 (273)
T ss_dssp SSSEEEEEECS--SEEEEEE-TTEEEEEECCTTST-TSCCGGGGSCCCEEEECS--SEEEE-E-ETTEEEEEECCTTSTT
T ss_pred CCCcEEEEccC--CEEEEEE-CCEEEEEeCCCCCc-eeeeecccccceEEecCC--Cceee-e-eeeeeeccCCCcceee
Confidence 44577776632 2333334 89999997665432 111122234455555432 22333 2 3899999986432111
Q ss_pred -eEEecCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCeEEEEEcCCC
Q 003236 677 -GVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSG 755 (837)
Q Consensus 677 -~~~~~~~~i~sl~~sp~g~~llags~dg~I~iwDl~s~~~~~~l~~h~~~V~sl~~spdg~~LasgsDg~I~IwDl~s~ 755 (837)
........+..+..... .. +...|+.+..|.................|..++- ....++...++.++.|.....
T Consensus 97 ~~~~~~~~~~~~i~~~~~--~~-~~~~dg~v~~~g~~~~~~~~~~~~~~~~v~~~~~--~~~~~~~~~~g~~~~~G~~~~ 171 (273)
T d1jtdb_ 97 TVPAEARSGVDAIAAGAW--AS-YALKDGKVIAWGDDSDGQTTVPAEAQSGVTALDG--GVYTALAVKNGGVIAWGDNYF 171 (273)
T ss_dssp CCCGGGGSSCCEEEEETT--EE-EEEETTEEEEEECCTTSTTSCCGGGGSSEEEEEE--CSSEEEEEETTEEEEEECCTT
T ss_pred ccccccccceeEEeeecc--cc-cccccccceecccCCCCceeeeccCCceEEEEec--cceeeeeecccceeEeecccC
Confidence 11112233444444332 22 2335788888865432111111112234544443 233444445888999976543
Q ss_pred CCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCC-cEEEeccCCCCeeEEEEeCCCCEEEEEECCCcEE
Q 003236 756 SKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTEN-KTLTLSAHDKLVSSLAASTVNGMVASASHDKCVK 834 (837)
Q Consensus 756 ~~~~~i~~~~~~~~~I~sv~fspdg~~L~sgs~dg~I~IwDl~s~-~~~~l~~h~~~V~sla~spdg~~LaSgs~DG~I~ 834 (837)
... .........|..++... .+.++.. ||.|+.|=.... .+-........|..|+-.. ...++. .||.|.
T Consensus 172 g~~---~~~~~~~~~v~~Is~G~--~h~~~l~-dG~v~~WG~n~~Gql~~~~~~~~~v~~I~~G~-~~~~~l--~~g~v~ 242 (273)
T d1jtdb_ 172 GQT---TVPAEAQSGVDDVAGGI--FHSLALK-DGKVIAWGDNRYKQTTVPTEALSGVSAIASGE-WYSLAL--KNGKVI 242 (273)
T ss_dssp STT---SCCGGGSSSEEEEEECS--SEEEEEE-TTEEEEEECCTTSTTCCCGGGGSSCCEEEECS-SCEEEE--ETTEEE
T ss_pred Ccc---cccccccCCccceeccc--eeeEEEe-cCcEEEcCCCCCCccCCCccCCCCcEEEEeCc-ceEEEE--ECCEEE
Confidence 211 11112234566665433 2333333 788999954332 2212222334577776543 233443 389999
Q ss_pred Ee
Q 003236 835 IW 836 (837)
Q Consensus 835 IW 836 (837)
.|
T Consensus 243 ~W 244 (273)
T d1jtdb_ 243 AW 244 (273)
T ss_dssp EE
T ss_pred EE
Confidence 98
|
| >d1jtdb_ b.69.5.2 (B:) beta-lactamase inhibitor protein-II, BLIP-II {Streptomyces exfoliatus [TaxId: 1905]} | Back information, alignment and structure |
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class: All beta proteins fold: 7-bladed beta-propeller superfamily: RCC1/BLIP-II family: beta-lactamase inhibitor protein-II, BLIP-II domain: beta-lactamase inhibitor protein-II, BLIP-II species: Streptomyces exfoliatus [TaxId: 1905]
Probab=86.04 E-value=5.1 Score=38.63 Aligned_cols=199 Identities=12% Similarity=-0.005 Sum_probs=92.1
Q ss_pred eEEEEEcCCCCceeEEeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeee-EEecCCCeeEEEEecCCCEEE
Q 003236 620 TVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAG-VFKCQSGATQMRFQPRLGRIL 698 (837)
Q Consensus 620 ~I~IWDl~~~~~~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~-~~~~~~~i~sl~~sp~g~~ll 698 (837)
+|+.|--................|..|+.-. .+.+ ... ||.|+.|-....-.+. .......+..+.. ...+.+
T Consensus 5 sv~~WG~~~~~~~~~~~~~~~~~i~~va~G~--~h~~-al~-dG~v~~wG~N~~GQlG~~~~~~~~v~~v~~--G~~~~~ 78 (273)
T d1jtdb_ 5 SVVAWGGNNDWGEATVPAEAQSGVDAIAGGY--FHGL-ALK-GGKVLGWGANLNGQLTMPAATQSGVDAIAA--GNYHSL 78 (273)
T ss_dssp EEEEESSCCSSSTTCCCGGGSSSEEEEEECS--SEEE-EEE-TTEEEEEECCTTSTTSCCGGGGSCCCEEEE--CSSEEE
T ss_pred EEEEECCCCCCCceeccccCCCCcEEEEccC--CEEE-EEE-CCEEEEEeCCCCCceeeeecccccceEEec--CCCcee
Confidence 5777753322111222222345677777642 2333 344 8999999876532221 1112234444443 223333
Q ss_pred EEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeC
Q 003236 699 AAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHP 778 (837)
Q Consensus 699 ags~dg~I~iwDl~s~~~~~~l~~h~~~V~sl~~spdg~~LasgsDg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fsp 778 (837)
+. .|+.++.|.....-...........+..++... ...+...|+.+..|....... .. ........|..++-
T Consensus 79 al-~dg~v~~wG~~~~gq~~~~~~~~~~~~~i~~~~--~~~~~~~dg~v~~~g~~~~~~-~~--~~~~~~~~v~~~~~-- 150 (273)
T d1jtdb_ 79 AL-KDGEVIAWGGNEDGQTTVPAEARSGVDAIAAGA--WASYALKDGKVIAWGDDSDGQ-TT--VPAEAQSGVTALDG-- 150 (273)
T ss_dssp EE-ETTEEEEEECCTTSTTCCCGGGGSSCCEEEEET--TEEEEEETTEEEEEECCTTST-TS--CCGGGGSSEEEEEE--
T ss_pred ee-eeeeeeccCCCcceeeccccccccceeEEeeec--ccccccccccceecccCCCCc-ee--eeccCCceEEEEec--
Confidence 33 488999997543211000011122344444332 223333588899997544321 00 01111223333332
Q ss_pred CCCEEEEEEcCCeEEEEECCCCcEE-EeccCCCCeeEEEEeCCCCEEEEEECCCcEEEe
Q 003236 779 TFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIW 836 (837)
Q Consensus 779 dg~~L~sgs~dg~I~IwDl~s~~~~-~l~~h~~~V~sla~spdg~~LaSgs~DG~I~IW 836 (837)
+.+.++...++.++.|-....... ........|..|+.... ..++ -. ||.|+.|
T Consensus 151 -~~~~~~~~~~g~~~~~G~~~~g~~~~~~~~~~~v~~Is~G~~-h~~~-l~-dG~v~~W 205 (273)
T d1jtdb_ 151 -GVYTALAVKNGGVIAWGDNYFGQTTVPAEAQSGVDDVAGGIF-HSLA-LK-DGKVIAW 205 (273)
T ss_dssp -CSSEEEEEETTEEEEEECCTTSTTSCCGGGSSSEEEEEECSS-EEEE-EE-TTEEEEE
T ss_pred -cceeeeeecccceeEeecccCCcccccccccCCccceeccce-eeEE-Ee-cCcEEEc
Confidence 222344445778888865443222 22234456777765432 2222 23 7888887
|