Citrus Sinensis ID: 003249

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830------
MRTFFPSDSCKESQLNGFNPQSWLQVERGKLSKLSSHNSSSSSIESFIKVPEPRILPNYKPVDYVEVLAQIHEELELCPLQERSSLYLLQFQVFKGLGEAKLMRRSLRKAWQKASTVHEKLVFGAWLKYEKQGEELIADLLINCDKCLQEFGPIDIASHLQTDINVAGSHETVSMSGDQVLRNVVFRIHEEKIECDRQKFAALSAPFSAMLNGSFMESLCEDIDLSENNISPSGLRIISDFSVTGSLNGVTPNLLLEILIFANKFCCERLKDACDRKLASLVASREDAVELMGYAIEENSPVLAVSCLQVFLRELPDCLNDERVVEIFSHANRQHRSIMVGLASFSLYCLLSEVAMNLDPRSDKTVCFLERLLESAETDRQRLLAFHQLGCVRLLRKEYDEAEHLFEAAVNAGHIYSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLYCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLALECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRHTRAHQGLARVHFLKNNKTTAYEEMTKLIKKARNNASAYEKRSEYCDRELTRADLEMVTQLDPLRVYPYRYRAAGLIVFLNLHITVCISNLSCI
cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHccccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEcccEEEccccHHHHccHHHHHHHccccccccccccccccccccHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHccccHHHHHHHHHHHHHHcccccccHHHHHHHccHHHHHHHHHcccHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHcccccHHHHHHHHHHHHccHHHHHHHHHHHHHHccccHHHHHHHHHcccHHHHHHHHHHHHHccccccHHHHHHHHHHHHcccHHHHHHHHHHHHcccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHcHHHHHHHHccHHHHHHHHHHccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccccccHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHcccHHHHHHHHHHHHcccccHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHcccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHcccHHHHHHHHccccc
cccccccccccccccccccccccccccccccccccccccccccHHHHHcccccccccccccHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHccHHccccccccccccccccccccccccccccccccccccccccccccccccEEEEEccccEEEEHHHHHHHcHHHHHHHccccHHHHHHHcccccccccHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHcccccHHHHHHHHHcccEEEEcHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccccHHHHHHHHcccHHHHHHHHHHHccccccccccHEEEHHHHccccHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHcHHHHHHHHHHHHcccccccEEcccccHHHHHHHHHHHHHHccHHHHHHHHHHHcccccHHHHHHHHHHHHHccccccHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccccHEEEEcEEEEccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHccccccccccHHHcccccEEEEcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHcHHHHHHHHHHccHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHEHHHHccccc
mrtffpsdsckesqlngfnpqswLQVERGKLsklsshnsssssiesfikvpeprilpnykpvdYVEVLAQIHEELelcplqersslYLLQFQVFKGLGEAKLMRRSLRKAWQKASTVHEKLVFGAWLKYEKQGEELIADLLINCDKClqefgpidiaSHLQTDINVAGSHETVSMSGDQVLRNVVFRIHEEKIECDRQKfaalsapfsamlnGSFMESLCedidlsennispsglriisdfsvtgslngvtpNLLLEILIFANKFCCERLKDACDRKLASLVASREDAVELMGYAIEENSPVLAVSCLQVFLRELPDCLNDERVVEIFSHANRQHRSIMVGLASFSLYCLLSEvamnldprsdkTVCFLERLLESAETDRQRLLAFHQLGCVRLLRKEYDEAEHLFEAAVNAGHIYSIAGLARLGYIKGHKLWAYEKLNSVISSVtplgwmyqerslycegdkrwedldkataldptlsypymyraSSLMTKQNVEAALAEINRILGFKLALECLELRFCFFLALEDYQAALCDVQAIltlspdyrmfeGRVAASQLHMLVREHIDNWTIADCWLQLYDrwssvddiGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYAladssqdsscsSTVVSLLEDAlkcpsdrlrkgqalnnlgsvyvdcgqldlaaDCYSNALKIRHTRAHQGLARVHFLKNNKTTAYEEMTKLIKKARNNASAYEKRSEYCDReltradlemvtqldplrvypyryRAAGLIVFLNLHITVCISNLSCI
mrtffpsdsckesqlngfnpqsWLQVERGKLSKLsshnsssssiesfikvpeprilPNYKPVDYVEVLAQIHEELELCPLQERSSLYLLQFQVFKGLGEAKLMRRSLRKAWQKASTVHEKLVFGAWLKYEKQGEELIADLLINCDKCLQEFGPIDIASHLQTDINVAGSHETVSMSGDQVLRNVVFRIHEEKIECDRQKFAALSAPFSAMLNGSFMESLCEDIDLSENNISPSGLRIISDFSVTGSLNGVTPNLLLEILIFANKFCCERLKDACDRKLASLVASREDAVELMGYAIEENSPVLAVSCLQVFLRELPDCLNDERVVEIFSHANRQHRSIMVGLASFSLYCLLSEVAMNLDPRSDKTVCFLERLLESAETDRQRLLAFHQLGCVRLLRKEYDEAEHLFEAAVNAGHIYSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLYCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLALECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRHTrahqglarvhflknnKTTAYEEMTKLIKKarnnasayekrseycdreltradlemvtqldplrVYPYRYRAAGLIVFLNLHITVCISNLSCI
MRTFFPSDSCKESQLNGFNPQSWLQVERGKLsklsshnsssssiesFIKVPEPRILPNYKPVDYVEVLAQIHEELELCPLQERSSLYLLQFQVFKGLGEAKLMRRSLRKAWQKASTVHEKLVFGAWLKYEKQGEELIADLLINCDKCLQEFGPIDIASHLQTDINVAGSHETVSMSGDQVLRNVVFRIHEEKIECDRQKFAALSAPFSAMLNGSFMESLCEDIDLSENNISPSGLRIISDFSVTGSLNGVTPNLLLEILIFANKFCCERLKDACDRKLASLVASREDAVELMGYAIEENSPVLAVSCLQVFLRELPDCLNDERVVEIFSHANRQHRSIMVGLASFSLYCLLSEVAMNLDPRSDKTVCFLERLLESAETDRQRLLAFHQLGCVRLLRKEYDEAEHLFEAAVNAGHIYSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLYCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKlaleclelrfcfflaleDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSllllrlNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYALAdssqdsscsstvvsLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRHTRAHQGLARVHFLKNNKTTAYEEMTKLIKKARNNASAYEKRSEYCDRELTRADLEMVTQLDPLRVYPYRYRAAGLIVFLNLHITVCISNLSCI
***********************************************IKVPEPRILPNYKPVDYVEVLAQIHEELELCPLQERSSLYLLQFQVFKGLGEAKLMRRSLRKAWQKASTVHEKLVFGAWLKYEKQGEELIADLLINCDKCLQEFGPIDIASHLQTDINVAGSHETVSMSGDQVLRNVVFRIHEEKIECDRQKFAALSAPFSAMLNGSFMESLCEDIDLSENNISPSGLRIISDFSVTGSLNGVTPNLLLEILIFANKFCCERLKDACDRKLASLVASREDAVELMGYAIEENSPVLAVSCLQVFLRELPDCLNDERVVEIFSHANRQHRSIMVGLASFSLYCLLSEVAMNLDPRSDKTVCFLERLLESAETDRQRLLAFHQLGCVRLLRKEYDEAEHLFEAAVNAGHIYSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLYCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLALECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYALA**********TVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRHTRAHQGLARVHFLKNNKTTAYEEMTKLIKK***********SEYCDRELTRADLEMVTQLDPLRVYPYRYRAAGLIVFLNLHITVCISNLS**
********SCKESQL************************************EPRILPNYKPVDYVEVLAQIHEELEL*PLQERSSLYLLQFQVFKGLGEAKLMRRSLRKAWQKASTVHEKLVFGAWLKYEKQGEELIADLLINCDKCLQEFGPIDIASHLQTD****************VLRNVVFRIHEEKIECDRQKFAALSAPFSAMLNGSFMESLCEDIDLSENNISPSGLRIISDFSVTGSLNGVTPNLLLEILIFANKFCCERLKDACDRKLASLVASREDAVELMGYAIEENSPVLAVSCLQVFLRELPDCLNDERVVEIFSHANRQHRSIMVGLASFSLYCLLSEVAMNLDPRSDKTVCFLERLLESAETDRQRLLAFHQLGCVRLLRKEYDEAEHLFEAAVNAGHIYSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLYCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLALECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRHTRAHQGLARVHFLKNNKTTAYEEMTKLIKKARNNASAYEKRSEYCDRELTRADLEMVTQLDPLRVYPYRYRAAGLIVFLNLHITVCISNLSCI
************SQLNGFNPQSWLQVERG*****************FIKVPEPRILPNYKPVDYVEVLAQIHEELELCPLQERSSLYLLQFQVFKGLGEAKLMRRSLRKAWQKASTVHEKLVFGAWLKYEKQGEELIADLLINCDKCLQEFGPIDIASHLQTDINVAGSHETVSMSGDQVLRNVVFRIHEEKIECDRQKFAALSAPFSAMLNGSFMESLCEDIDLSENNISPSGLRIISDFSVTGSLNGVTPNLLLEILIFANKFCCERLKDACDRKLASLVASREDAVELMGYAIEENSPVLAVSCLQVFLRELPDCLNDERVVEIFSHANRQHRSIMVGLASFSLYCLLSEVAMNLDPRSDKTVCFLERLLESAETDRQRLLAFHQLGCVRLLRKEYDEAEHLFEAAVNAGHIYSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLYCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLALECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSL*********DHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYALA*************SLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRHTRAHQGLARVHFLKNNKTTAYEEMTKLIKKARNNASAYEKRSEYCDRELTRADLEMVTQLDPLRVYPYRYRAAGLIVFLNLHITVCISNLSCI
*******************************************IESFIKVPEPRILPNYKPVDYVEVLAQIHEELELCPLQERSSLYLLQFQVFKGLGEAKLMRRSLRKAWQKASTVHEKLVFGAWLKYEKQGEELIADLLINCDKCLQEFGPIDIASHLQTDINV*************VLRNVVFRIHEEKIECDRQKFAALSAPFSAMLNGSFMESLCEDIDLSENNISPSGLRIISDFSVTGSLNGVTPNLLLEILIFANKFCCERLKDACDRKLASLVASREDAVELMGYAIEENSPVLAVSCLQVFLRELPDCLNDERVVEIFSHANRQHRSIMVGLASFSLYCLLSEVAMNLDPRSDKTVCFLERLLESAETDRQRLLAFHQLGCVRLLRKEYDEAEHLFEAAVNAGHIYSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLYCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLALECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRHTRAHQGLARVHFLKNNKTTAYEEMTKLIKKARNNASAYEKRSEYCDRELTRADLEMVTQLDPLRVYPYRYRAAGLIVFLNLHITVCISNLSCI
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MRTFFPSDSCKESQLNGFNPQSWLQVERGKLSKLSSHNSSSSSIESFIKVPEPRILPNYKPVDYVEVLAQIHEELELCPLQERSSLYLLQFQVFKGLGEAKLMRRSLRKAWQKASTVHEKLVFGAWLKYEKQGEELIADLLINCDKCLQEFGPIDIASHLQTDINVAGSHETVSMSGDQVLRNVVFRIHEEKIECDRQKFAALSAPFSAMLNGSFMESLCEDIDLSENNISPSGLRIISDFSVTGSLNGVTPNLLLEILIFANKFCCERLKDACDRKLASLVASREDAVELMGYAIEENSPVLAVSCLQVFLRELPDCLNDERVVEIFSHANRQHRSIMVGLASFSLYCLLSEVAMNLDPRSDKTVCFLERLLESAETDRQRLLAFHQLGCVRLLRKEYDEAEHLFEAAVNAGHIYSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLYCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLALECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRHTRAHQGLARVHFLxxxxxxxxxxxxxxxxxxxxxxxxxxxxSEYCDRELTRADLEMVTQLDPLRVYPYRYRAAGLIVFLNLHITVCISNLSCI
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query836 2.2.26 [Sep-21-2011]
Q9ZQX6888 ETO1-like protein 1 OS=Ar yes no 0.976 0.918 0.733 0.0
O65020951 Ethylene-overproduction p no no 0.918 0.807 0.523 0.0
Q9LV01925 ETO1-like protein 2 OS=Ar no no 0.918 0.830 0.455 0.0
>sp|Q9ZQX6|ETOL1_ARATH ETO1-like protein 1 OS=Arabidopsis thaliana GN=EOL1 PE=1 SV=1 Back     alignment and function desciption
 Score = 1209 bits (3127), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 602/821 (73%), Positives = 708/821 (86%), Gaps = 5/821 (0%)

Query: 1   MRTFFPSDSCKESQLNGFNPQSWLQVERGKLSKLSSHNSSSSSIESFIKVPEPRILPNYK 60
           MRTF+PSDSCKESQL+  NPQSWLQVERGKLS  +S ++     ESFIKVPEP+ILP+YK
Sbjct: 1   MRTFYPSDSCKESQLDSLNPQSWLQVERGKLSSSASSSAPLCR-ESFIKVPEPQILPHYK 59

Query: 61  PVDYVEVLAQIHEELELCPLQERSSLYLLQFQVFKGLGEAKLMRRSLRKAWQKASTVHEK 120
           P+DYVEVLAQIHEEL+ CPLQERS LYLLQ+QVF+GLGE KL RRSL+ AWQ+A+TVHEK
Sbjct: 60  PLDYVEVLAQIHEELDTCPLQERSILYLLQYQVFRGLGETKLRRRSLQSAWQEATTVHEK 119

Query: 121 LVFGAWLKYEKQGEELIADLLINCDKCLQEFGPIDIASHLQTDINVAGSHETVSMSGDQ- 179
           +VFG+WL+YEKQGEE+I DLL +C K  +EF P+DIAS+       A S E  S+  ++ 
Sbjct: 120 VVFGSWLRYEKQGEEVITDLLSSCGKYSEEFVPLDIASYFPA--TTASSPEAASVKTNRS 177

Query: 180 VLRNVVFRIHEEKIECDRQKFAALSAPFSAMLNGSFMESLCEDIDLSENNISPSGLRIIS 239
           V +NVVF+I EEKI C R+K A+LSAPF AML G+F ESL ++ID+SEN++S S +R++ 
Sbjct: 178 VSKNVVFKIGEEKIACQRRKIASLSAPFHAMLYGNFTESLLDEIDMSENHVSSSAMRVVR 237

Query: 240 DFSVTGSLNGVTPNLLLEILIFANKFCCERLKDACDRKLASLVASREDAVELMGYAIEEN 299
           DFSV G L GV+ NLLLE+L+FANKFCCERLKDACDR+LASL++S E A+ELM +A+EEN
Sbjct: 238 DFSVVGVLIGVSKNLLLEVLVFANKFCCERLKDACDRELASLISSMECAIELMDFALEEN 297

Query: 300 SPVLAVSCLQVFLRELPDCLNDERVVEIFSHANRQHRSIMVGLASFSLYCLLSEVAMNLD 359
           SP+LA SCLQVFL E+PD LNDERVVE+ +  NR   S M G A FSLY  LSEV+M +D
Sbjct: 298 SPILASSCLQVFLYEMPDSLNDERVVEVLTRVNRSQVSTMAGKAPFSLYSCLSEVSMCID 357

Query: 360 PRSDKTVCFLERLLESAETDRQRLLAFHQLGCVRLLRKEYDEAEHLFEAAVNAGHIYSIA 419
           PRSD+T+ FLE+L++ AE DRQ++L FH+LGC+RLLRKEY EAE  FE A N GH+YS  
Sbjct: 358 PRSDRTLGFLEKLVDFAENDRQQVLGFHRLGCMRLLRKEYREAEEAFETAFNLGHVYSAT 417

Query: 420 GLARLGYIKGHKLWAYEKLNSVISSVTP-LGWMYQERSLYCEGDKRWEDLDKATALDPTL 478
           GLARLGYI+GH+LWAYEKL+SVISSV+P LGWMYQERS YCEGDK+ EDL+KAT LDPTL
Sbjct: 418 GLARLGYIQGHRLWAYEKLSSVISSVSPPLGWMYQERSFYCEGDKKLEDLEKATELDPTL 477

Query: 479 SYPYMYRASSLMTKQNVEAALAEINRILGFKLALECLELRFCFFLALEDYQAALCDVQAI 538
           +YPYMYRA + M+KQN +AAL EINRILGFKLALECLE+RFC +L ++DY+AAL D+QA 
Sbjct: 478 TYPYMYRAVTRMSKQNAKAALEEINRILGFKLALECLEIRFCLYLGMDDYEAALRDIQAA 537

Query: 539 LTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLE 598
           LTL PDYRMF+G+VA  QL  LV EH++NWT ADCW+QLY++WS+VDDIGSLSVIYQMLE
Sbjct: 538 LTLCPDYRMFDGKVAGRQLQTLVYEHVENWTTADCWMQLYEKWSNVDDIGSLSVIYQMLE 597

Query: 599 SDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGL 658
           SDA KGVLYFRQSLLLLRLNCPEAAMRSLQLAR+HA+SDHERLVYEGWILYDT HCEEGL
Sbjct: 598 SDACKGVLYFRQSLLLLRLNCPEAAMRSLQLAREHASSDHERLVYEGWILYDTGHCEEGL 657

Query: 659 RKAEESIQMKRSFEAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNL 718
           +KA+ESI +KRSFEA+FL+AYALA+SS D S SSTVVSLLEDALKCPSDRLRKGQALNNL
Sbjct: 658 QKAKESIGIKRSFEAYFLQAYALAESSLDPSSSSTVVSLLEDALKCPSDRLRKGQALNNL 717

Query: 719 GSVYVDCGQLDLAADCYSNALKIRHTRAHQGLARVHFLKNNKTTAYEEMTKLIKKARNNA 778
           GSVYVDC +LDLAADCY NALK+RHTRAHQGLARVHFL+N+K  AYEEMT+LI+KA+NNA
Sbjct: 718 GSVYVDCEKLDLAADCYINALKVRHTRAHQGLARVHFLRNDKAAAYEEMTRLIEKAQNNA 777

Query: 779 SAYEKRSEYCDRELTRADLEMVTQLDPLRVYPYRYRAAGLI 819
           SAYEKRSEYCDREL ++DLEMVT+LDPLRVYPYRYRAA L+
Sbjct: 778 SAYEKRSEYCDRELAKSDLEMVTRLDPLRVYPYRYRAAVLM 818
Possible regulator of the ethylene pathway, which acts by regulating the stability of 1-aminocyclopropane-1-carboxylate synthase (ACS) enzymes. May act as a substrate-specific adapter that connects ACS enzymes, such as ACS5, to ubiquitin ligase complexes, leading to proteasomal degradation of ACS enzymes.
Arabidopsis thaliana (taxid: 3702)
>sp|O65020|ETO1_ARATH Ethylene-overproduction protein 1 OS=Arabidopsis thaliana GN=ETO1 PE=1 SV=2 Back     alignment and function description
>sp|Q9LV01|ETOL2_ARATH ETO1-like protein 2 OS=Arabidopsis thaliana GN=EOL2 PE=1 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query836
359495432886 PREDICTED: ETO1-like protein 1-like [Vit 0.976 0.920 0.836 0.0
255559841851 conserved hypothetical protein [Ricinus 0.978 0.961 0.821 0.0
449455250890 PREDICTED: ETO1-like protein 1-like [Cuc 0.978 0.919 0.779 0.0
449526563890 PREDICTED: ETO1-like protein 1-like [Cuc 0.978 0.919 0.778 0.0
70780055886 ethylene overproducer-like 1 [Solanum ly 0.976 0.920 0.770 0.0
350539533886 ethylene-overproducer1-like protein [Sol 0.976 0.920 0.766 0.0
356572224886 PREDICTED: ETO1-like protein 1-like [Gly 0.976 0.920 0.755 0.0
356504961888 PREDICTED: ETO1-like protein 1-like [Gly 0.977 0.920 0.760 0.0
224082686787 predicted protein [Populus trichocarpa] 0.856 0.909 0.825 0.0
297809881888 hypothetical protein ARALYDRAFT_490290 [ 0.976 0.918 0.733 0.0
>gi|359495432|ref|XP_002280519.2| PREDICTED: ETO1-like protein 1-like [Vitis vinifera] gi|296084480|emb|CBI25039.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
 Score = 1396 bits (3614), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 685/819 (83%), Positives = 746/819 (91%), Gaps = 3/819 (0%)

Query: 1   MRTFFPSDSCKESQLNGFNPQSWLQVERGKLSKLSSHNSSSSSIESFIKVPEPRILPNYK 60
           M+  FPS+SCKE+QLN FNPQSWLQVERGKLSK SS   SSSSIES IKVPEP ILP +K
Sbjct: 1   MKNLFPSESCKETQLNAFNPQSWLQVERGKLSKFSS--QSSSSIESLIKVPEPPILPFFK 58

Query: 61  PVDYVEVLAQIHEELELCPLQERSSLYLLQFQVFKGLGEAKLMRRSLRKAWQKASTVHEK 120
           PVDYVEVLAQIHEELE CP QERS+LYLLQFQVF+GLGE KLMRRSLR AWQ+ASTV EK
Sbjct: 59  PVDYVEVLAQIHEELESCPPQERSNLYLLQFQVFRGLGEVKLMRRSLRSAWQRASTVQEK 118

Query: 121 LVFGAWLKYEKQGEELIADLLINCDKCLQEFGPIDIASHLQTDINVAGSHETVSMSGDQV 180
           L+FGAWLKYEKQGEELIADLL +C KC QEFGPIDIAS L  D N + S+E V M+G+++
Sbjct: 119 LIFGAWLKYEKQGEELIADLLASCGKCAQEFGPIDIASQLPADSNTS-SNEAVVMNGNEI 177

Query: 181 LRNVVFRIHEEKIECDRQKFAALSAPFSAMLNGSFMESLCEDIDLSENNISPSGLRIISD 240
           L+ V+FRI +EKI CDRQK A LSAPF AMLNG F ESL EDIDLSENNISPSG+R I +
Sbjct: 178 LKTVIFRIGDEKIVCDRQKIAGLSAPFHAMLNGCFTESLQEDIDLSENNISPSGMRAIHE 237

Query: 241 FSVTGSLNGVTPNLLLEILIFANKFCCERLKDACDRKLASLVASREDAVELMGYAIEENS 300
           F +TGSL  V P+LLLEILIF NKFCCERLKDAC RKLASLV+SR+DAVEL+ YA+EENS
Sbjct: 238 FCMTGSLGEVPPDLLLEILIFGNKFCCERLKDACGRKLASLVSSRDDAVELIDYALEENS 297

Query: 301 PVLAVSCLQVFLRELPDCLNDERVVEIFSHANRQHRSIMVGLASFSLYCLLSEVAMNLDP 360
           PVLA SCLQVFL ELPDCLND RV+EI S ANRQ RSIMVG ASFSLYC LSEVAM LDP
Sbjct: 298 PVLAASCLQVFLHELPDCLNDNRVLEILSDANRQQRSIMVGPASFSLYCFLSEVAMALDP 357

Query: 361 RSDKTVCFLERLLESAETDRQRLLAFHQLGCVRLLRKEYDEAEHLFEAAVNAGHIYSIAG 420
           RSD T CFLERL+ESAE+ RQRLLA HQLGCVRLLRKEYDEAE LFEAA+NAGH+YS+AG
Sbjct: 358 RSDTTACFLERLVESAESSRQRLLACHQLGCVRLLRKEYDEAEQLFEAALNAGHVYSVAG 417

Query: 421 LARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLYCEGDKRWEDLDKATALDPTLSY 480
           L RLGY+KGHKLW+Y+KL+SVISS TPLGWMYQERSLYCEGDKRWEDL+KAT LDPTL+Y
Sbjct: 418 LVRLGYLKGHKLWSYDKLSSVISSFTPLGWMYQERSLYCEGDKRWEDLEKATELDPTLTY 477

Query: 481 PYMYRASSLMTKQNVEAALAEINRILGFKLALECLELRFCFFLALEDYQAALCDVQAILT 540
           PYMYRA+SLM KQNV+AALAEIN++LGFKLALECLELRFCF+LA+E+Y+AA CDVQAILT
Sbjct: 478 PYMYRAASLMRKQNVQAALAEINQVLGFKLALECLELRFCFYLAVENYEAAFCDVQAILT 537

Query: 541 LSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESD 600
           LSPDYRMFEGRVAASQL MLVREH+++WT ADCWLQLYDRWSSVDDIGSLSVIYQMLESD
Sbjct: 538 LSPDYRMFEGRVAASQLRMLVREHVESWTTADCWLQLYDRWSSVDDIGSLSVIYQMLESD 597

Query: 601 APKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRK 660
           A KGVLYFRQSLLLLRLNCPEAAMRSLQLARQHA+++HERLVYEGWILYDT HCEEGLRK
Sbjct: 598 AAKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHASNEHERLVYEGWILYDTGHCEEGLRK 657

Query: 661 AEESIQMKRSFEAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGS 720
           AEESI +KRSFEAFFLKAYALADSSQD SCSSTVVSLLEDALKCPSDRLRKGQALNNLGS
Sbjct: 658 AEESIGLKRSFEAFFLKAYALADSSQDPSCSSTVVSLLEDALKCPSDRLRKGQALNNLGS 717

Query: 721 VYVDCGQLDLAADCYSNALKIRHTRAHQGLARVHFLKNNKTTAYEEMTKLIKKARNNASA 780
           VYVDCG+L+LAADCY NALKIRHTRAHQGLARVHFLKN+KT AY EMTKLI+KARNNASA
Sbjct: 718 VYVDCGKLELAADCYINALKIRHTRAHQGLARVHFLKNDKTAAYVEMTKLIEKARNNASA 777

Query: 781 YEKRSEYCDRELTRADLEMVTQLDPLRVYPYRYRAAGLI 819
           YEKRSEYC+RELT+ADLEMVT+LDPLRVYPYRYRAA L+
Sbjct: 778 YEKRSEYCERELTKADLEMVTRLDPLRVYPYRYRAAVLM 816

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255559841|ref|XP_002520939.1| conserved hypothetical protein [Ricinus communis] gi|223539776|gb|EEF41356.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
>gi|449455250|ref|XP_004145366.1| PREDICTED: ETO1-like protein 1-like [Cucumis sativus] gi|449473087|ref|XP_004153780.1| PREDICTED: ETO1-like protein 1-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449526563|ref|XP_004170283.1| PREDICTED: ETO1-like protein 1-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|70780055|gb|AAZ08351.1| ethylene overproducer-like 1 [Solanum lycopersicum] Back     alignment and taxonomy information
>gi|350539533|ref|NP_001234175.1| ethylene-overproducer1-like protein [Solanum lycopersicum] gi|78707376|gb|ABB46489.1| ethylene-overproducer1-like protein [Solanum lycopersicum] Back     alignment and taxonomy information
>gi|356572224|ref|XP_003554270.1| PREDICTED: ETO1-like protein 1-like [Glycine max] Back     alignment and taxonomy information
>gi|356504961|ref|XP_003521261.1| PREDICTED: ETO1-like protein 1-like [Glycine max] Back     alignment and taxonomy information
>gi|224082686|ref|XP_002306795.1| predicted protein [Populus trichocarpa] gi|222856244|gb|EEE93791.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|297809881|ref|XP_002872824.1| hypothetical protein ARALYDRAFT_490290 [Arabidopsis lyrata subsp. lyrata] gi|297318661|gb|EFH49083.1| hypothetical protein ARALYDRAFT_490290 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query836
TAIR|locus:2132402888 EOL1 "ETO1-like 1" [Arabidopsi 0.976 0.918 0.695 2e-310
TAIR|locus:2074343959 ETO1 "ETHYLENE OVERPRODUCER 1" 0.918 0.800 0.503 4.5e-200
TAIR|locus:2132402 EOL1 "ETO1-like 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 2978 (1053.4 bits), Expect = 2.0e-310, P = 2.0e-310
 Identities = 571/821 (69%), Positives = 669/821 (81%)

Query:     1 MRTFFPSDSCKESQLNGFNPQSWLQVERGKLXXXXXXXXXXXXXXXFIKVPEPRILPNYK 60
             MRTF+PSDSCKESQL+  NPQSWLQVERGKL               FIKVPEP+ILP+YK
Sbjct:     1 MRTFYPSDSCKESQLDSLNPQSWLQVERGKLSSSASSSAPLCRES-FIKVPEPQILPHYK 59

Query:    61 PVDYVEVLAQIHEELELCPLQERSSLYLLQFQVFKGLGEAKLMRRSLRKAWQKASTVHEK 120
             P+DYVEVLAQIHEEL+ CPLQERS LYLLQ+QVF+GLGE KL RRSL+ AWQ+A+TVHEK
Sbjct:    60 PLDYVEVLAQIHEELDTCPLQERSILYLLQYQVFRGLGETKLRRRSLQSAWQEATTVHEK 119

Query:   121 LVFGAWLKYEKQGEELIADLLINCDKCLQEFGPIDIASHLQTDINVAGSHETVSMSGDQ- 179
             +VFG+WL+YEKQGEE+I DLL +C K  +EF P+DIAS+       A S E  S+  ++ 
Sbjct:   120 VVFGSWLRYEKQGEEVITDLLSSCGKYSEEFVPLDIASYFPA--TTASSPEAASVKTNRS 177

Query:   180 VLRNVVFRIHEEKIECDRQKFAALSAPFSAMLNGSFMESLCEDIDLSENNISPSGLRIIS 239
             V +NVVF+I EEKI C R+K A+LSAPF AML G+F ESL ++ID+SEN++S S +R++ 
Sbjct:   178 VSKNVVFKIGEEKIACQRRKIASLSAPFHAMLYGNFTESLLDEIDMSENHVSSSAMRVVR 237

Query:   240 DFSVTGSLNGVTPNLLLEILIFANKFCCERLKDACDRKLASLVASREDAVELMGYAIEEN 299
             DFSV G L GV+ NLLLE+L+FANKFCCERLKDACDR+LASL++S E A+ELM +A+EEN
Sbjct:   238 DFSVVGVLIGVSKNLLLEVLVFANKFCCERLKDACDRELASLISSMECAIELMDFALEEN 297

Query:   300 SPVLAVSCLQVFLRELPDCLNDERVVEIFSHANRQHRSIMVGLASFSLYCLLSEVAMNLD 359
             SP+LA SCLQVFL E+PD LNDERVVE+ +  NR   S M G A FSLY  LSEV+M +D
Sbjct:   298 SPILASSCLQVFLYEMPDSLNDERVVEVLTRVNRSQVSTMAGKAPFSLYSCLSEVSMCID 357

Query:   360 PRSDKTVCFLERLLESAETDRQRLLAFHQLGCVRLLRKEYDEAEHLFEAAVNAGHIYSIA 419
             PRSD+T+ FLE+L++ AE DRQ++L FH+LGC+RLLRKEY EAE  FE A N GH+YS  
Sbjct:   358 PRSDRTLGFLEKLVDFAENDRQQVLGFHRLGCMRLLRKEYREAEEAFETAFNLGHVYSAT 417

Query:   420 GLARLGYIKGHKLWAYEKLNSVISSVTP-LGWMYQERSLYCEGDKRWEDLDKATALDPTL 478
             GLARLGYI+GH+LWAYEKL+SVISSV+P LGWMYQERS YCEGDK+ EDL+KAT LDPTL
Sbjct:   418 GLARLGYIQGHRLWAYEKLSSVISSVSPPLGWMYQERSFYCEGDKKLEDLEKATELDPTL 477

Query:   479 SYPYMYRASSLMTKQNVEAALAEINRILGFKXXXXXXXXXXXXXXXXXDYQAALCDVQAI 538
             +YPYMYRA + M+KQN +AAL EINRILGFK                 DY+AAL D+QA 
Sbjct:   478 TYPYMYRAVTRMSKQNAKAALEEINRILGFKLALECLEIRFCLYLGMDDYEAALRDIQAA 537

Query:   539 LTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLE 598
             LTL PDYRMF+G+VA  QL  LV EH++NWT ADCW+QLY++WS+VDDIGSLSVIYQMLE
Sbjct:   538 LTLCPDYRMFDGKVAGRQLQTLVYEHVENWTTADCWMQLYEKWSNVDDIGSLSVIYQMLE 597

Query:   599 SDAPKGVLYFRQSXXXXXXNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGL 658
             SDA KGVLYFRQS      NCPEAAMRSLQLAR+HA+SDHERLVYEGWILYDT HCEEGL
Sbjct:   598 SDACKGVLYFRQSLLLLRLNCPEAAMRSLQLAREHASSDHERLVYEGWILYDTGHCEEGL 657

Query:   659 RKAEESIQMKRSFEAFFLKAYALAXXXXXXXXXXXXXXLLEDALKCPSDRLRKGQALNNL 718
             +KA+ESI +KRSFEA+FL+AYALA              LLEDALKCPSDRLRKGQALNNL
Sbjct:   658 QKAKESIGIKRSFEAYFLQAYALAESSLDPSSSSTVVSLLEDALKCPSDRLRKGQALNNL 717

Query:   719 GSVYVDCGQLDLAADCYSNALKIRHTRAHQGLARVHFLKNNKTTAYEEMTKLIKKARNNA 778
             GSVYVDC +LDLAADCY NALK+RHTRAHQGLARVHFL+N+K  AYEEMT+LI+KA+NNA
Sbjct:   718 GSVYVDCEKLDLAADCYINALKVRHTRAHQGLARVHFLRNDKAAAYEEMTRLIEKAQNNA 777

Query:   779 SAYEKRSEYCDRELTRADLEMVTQLDPLRVYPYRYRAAGLI 819
             SAYEKRSEYCDREL ++DLEMVT+LDPLRVYPYRYRAA L+
Sbjct:   778 SAYEKRSEYCDRELAKSDLEMVTRLDPLRVYPYRYRAAVLM 818
GO:0005634 "nucleus" evidence=ISM
GO:0010364 "regulation of ethylene biosynthetic process" evidence=IDA
GO:0005515 "protein binding" evidence=IPI
GO:0000096 "sulfur amino acid metabolic process" evidence=RCA
GO:0000394 "RNA splicing, via endonucleolytic cleavage and ligation" evidence=RCA
GO:0007267 "cell-cell signaling" evidence=RCA
GO:0008652 "cellular amino acid biosynthetic process" evidence=RCA
GO:0009069 "serine family amino acid metabolic process" evidence=RCA
GO:0009086 "methionine biosynthetic process" evidence=RCA
GO:0009616 "virus induced gene silencing" evidence=RCA
GO:0009855 "determination of bilateral symmetry" evidence=RCA
GO:0010014 "meristem initiation" evidence=RCA
GO:0010050 "vegetative phase change" evidence=RCA
GO:0010073 "meristem maintenance" evidence=RCA
GO:0010267 "production of ta-siRNAs involved in RNA interference" evidence=RCA
GO:0035196 "production of miRNAs involved in gene silencing by miRNA" evidence=RCA
GO:0042545 "cell wall modification" evidence=RCA
TAIR|locus:2074343 ETO1 "ETHYLENE OVERPRODUCER 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9ZQX6ETOL1_ARATHNo assigned EC number0.73320.97600.9189yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query836
smart0022597 smart00225, BTB, Broad-Complex, Tramtrack and Bric 2e-06
cd00189100 cd00189, TPR, Tetratricopeptide repeat domain; typ 4e-05
TIGR02917899 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system 5e-05
pfam1341469 pfam13414, TPR_11, TPR repeat 5e-04
cd00189100 cd00189, TPR, Tetratricopeptide repeat domain; typ 0.003
>gnl|CDD|197585 smart00225, BTB, Broad-Complex, Tramtrack and Bric a brac Back     alignment and domain information 
 Score = 46.9 bits (112), Expect = 2e-06
 Identities = 26/99 (26%), Positives = 44/99 (44%), Gaps = 3/99 (3%)

Query: 183 NVVFRIHEEKIECDRQKFAALSAPFSAMLNGSFMESLCEDIDLSENNISPSGLRIISDFS 242
           +V   +  +K    +   AA S  F A+ +  F ES   +I L +  +SP   R + +F 
Sbjct: 1   DVTLVVGGKKFHAHKAVLAAHSPYFKALFSSDFKESDKSEIYLDD--VSPEDFRALLNFL 58

Query: 243 VTGSLNGVTPNLLLEILIFANKFCCERLKDACDRKLASL 281
            TG L+ +    + E+L  A+      L + C+  L  L
Sbjct: 59  YTGKLD-LPEENVEELLELADYLQIPGLVELCEEFLLKL 96

Domain in Broad-Complex, Tramtrack and Bric a brac. Also known as POZ (poxvirus and zinc finger) domain. Known to be a protein-protein interaction motif found at the N-termini of several C2H2-type transcription factors as well as Shaw-type potassium channels. Known structure reveals a tightly intertwined dimer formed via interactions between N-terminal strand and helix structures. However in a subset of BTB/POZ domains, these two secondary structures appear to be missing. Be aware SMART predicts BTB/POZ domains without the beta1- and alpha1-secondary structures. Length = 97
>gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here Back     alignment and domain information
>gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein Back     alignment and domain information
>gnl|CDD|222112 pfam13414, TPR_11, TPR repeat Back     alignment and domain information
>gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 836
KOG4626 966 consensus O-linked N-acetylglucosamine transferase 100.0
KOG4626 966 consensus O-linked N-acetylglucosamine transferase 100.0
TIGR00990615 3a0801s09 mitochondrial precursor proteins import 100.0
TIGR02917899 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat 100.0
TIGR02917 899 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat 100.0
TIGR00990615 3a0801s09 mitochondrial precursor proteins import 100.0
PRK11447 1157 cellulose synthase subunit BcsC; Provisional 100.0
PRK11447 1157 cellulose synthase subunit BcsC; Provisional 100.0
PRK15174 656 Vi polysaccharide export protein VexE; Provisional 99.97
PRK15174 656 Vi polysaccharide export protein VexE; Provisional 99.97
PRK09782 987 bacteriophage N4 receptor, outer membrane subunit; 99.96
KOG0547606 consensus Translocase of outer mitochondrial membr 99.96
PRK10049 765 pgaA outer membrane protein PgaA; Provisional 99.96
KOG0624 504 consensus dsRNA-activated protein kinase inhibitor 99.95
PRK09782 987 bacteriophage N4 receptor, outer membrane subunit; 99.95
KOG0547606 consensus Translocase of outer mitochondrial membr 99.94
PRK10049 765 pgaA outer membrane protein PgaA; Provisional 99.94
KOG2002 1018 consensus TPR-containing nuclear phosphoprotein th 99.93
PRK11788389 tetratricopeptide repeat protein; Provisional 99.92
KOG0548539 consensus Molecular co-chaperone STI1 [Posttransla 99.91
KOG2002 1018 consensus TPR-containing nuclear phosphoprotein th 99.89
KOG1126638 consensus DNA-binding cell division cycle control 99.89
KOG1126638 consensus DNA-binding cell division cycle control 99.89
KOG0548539 consensus Molecular co-chaperone STI1 [Posttransla 99.89
PRK11788389 tetratricopeptide repeat protein; Provisional 99.89
PHA02713557 hypothetical protein; Provisional 99.88
KOG4441571 consensus Proteins containing BTB/POZ and Kelch do 99.88
PRK12370553 invasion protein regulator; Provisional 99.87
PRK11189296 lipoprotein NlpI; Provisional 99.87
PHA02790480 Kelch-like protein; Provisional 99.86
PRK14574 822 hmsH outer membrane protein; Provisional 99.86
PRK11189296 lipoprotein NlpI; Provisional 99.86
PHA03098534 kelch-like protein; Provisional 99.85
KOG0550 486 consensus Molecular chaperone (DnaJ superfamily) [ 99.85
PRK12370553 invasion protein regulator; Provisional 99.84
KOG1155559 consensus Anaphase-promoting complex (APC), Cdc23 99.83
KOG0624504 consensus dsRNA-activated protein kinase inhibitor 99.83
PRK14574 822 hmsH outer membrane protein; Provisional 99.82
PLN02789320 farnesyltranstransferase 99.82
PLN02789320 farnesyltranstransferase 99.82
KOG1173611 consensus Anaphase-promoting complex (APC), Cdc16 99.81
KOG4350620 consensus Uncharacterized conserved protein, conta 99.79
KOG2076 895 consensus RNA polymerase III transcription factor 99.78
TIGR00540409 hemY_coli hemY protein. This is an uncharacterized 99.77
KOG0550486 consensus Molecular chaperone (DnaJ superfamily) [ 99.76
PF13429280 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 99.76
TIGR02521234 type_IV_pilW type IV pilus biogenesis/stability pr 99.76
KOG1155559 consensus Anaphase-promoting complex (APC), Cdc23 99.76
TIGR02521234 type_IV_pilW type IV pilus biogenesis/stability pr 99.75
KOG1125579 consensus TPR repeat-containing protein [General f 99.74
PRK10747398 putative protoheme IX biogenesis protein; Provisio 99.74
PF13429280 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 99.72
KOG1173611 consensus Anaphase-promoting complex (APC), Cdc16 99.72
KOG1125579 consensus TPR repeat-containing protein [General f 99.71
KOG1127 1238 consensus TPR repeat-containing protein [RNA proce 99.68
TIGR00540409 hemY_coli hemY protein. This is an uncharacterized 99.66
PRK15359144 type III secretion system chaperone protein SscB; 99.65
PLN03081 697 pentatricopeptide (PPR) repeat-containing protein; 99.64
KOG4162799 consensus Predicted calmodulin-binding protein [Si 99.63
KOG2003 840 consensus TPR repeat-containing protein [General f 99.63
KOG4162799 consensus Predicted calmodulin-binding protein [Si 99.62
KOG2076 895 consensus RNA polymerase III transcription factor 99.62
KOG2075521 consensus Topoisomerase TOP1-interacting protein B 99.62
COG3063250 PilF Tfp pilus assembly protein PilF [Cell motilit 99.62
KOG1127 1238 consensus TPR repeat-containing protein [RNA proce 99.61
KOG1129478 consensus TPR repeat-containing protein [General f 99.61
cd05804355 StaR_like StaR_like; a well-conserved protein foun 99.61
KOG1840508 consensus Kinesin light chain [Cytoskeleton] 99.61
KOG2003840 consensus TPR repeat-containing protein [General f 99.61
PRK15359144 type III secretion system chaperone protein SscB; 99.6
KOG1174564 consensus Anaphase-promoting complex (APC), subuni 99.6
TIGR03302235 OM_YfiO outer membrane assembly lipoprotein YfiO. 99.59
PLN03077 857 Protein ECB2; Provisional 99.59
cd05804355 StaR_like StaR_like; a well-conserved protein foun 99.59
COG3063250 PilF Tfp pilus assembly protein PilF [Cell motilit 99.59
PLN03077857 Protein ECB2; Provisional 99.58
PF00651111 BTB: BTB/POZ domain; InterPro: IPR013069 The BTB ( 99.58
PLN03218 1060 maturation of RBCL 1; Provisional 99.58
PLN03081 697 pentatricopeptide (PPR) repeat-containing protein; 99.57
KOG1174564 consensus Anaphase-promoting complex (APC), subuni 99.57
KOG1129478 consensus TPR repeat-containing protein [General f 99.57
TIGR03302235 OM_YfiO outer membrane assembly lipoprotein YfiO. 99.55
PRK10747398 putative protoheme IX biogenesis protein; Provisio 99.55
smart0022590 BTB Broad-Complex, Tramtrack and Bric a brac. Doma 99.55
PLN03218 1060 maturation of RBCL 1; Provisional 99.55
KOG1840508 consensus Kinesin light chain [Cytoskeleton] 99.53
PRK15179 694 Vi polysaccharide biosynthesis protein TviE; Provi 99.48
KOG4591280 consensus Uncharacterized conserved protein, conta 99.48
KOG1156 700 consensus N-terminal acetyltransferase [Chromatin 99.45
PRK14720 906 transcript cleavage factor/unknown domain fusion p 99.45
PRK15179 694 Vi polysaccharide biosynthesis protein TviE; Provi 99.45
KOG0553304 consensus TPR repeat-containing protein [General f 99.44
PRK10370198 formate-dependent nitrite reductase complex subuni 99.44
KOG0495913 consensus HAT repeat protein [RNA processing and m 99.44
KOG0553304 consensus TPR repeat-containing protein [General f 99.4
PRK10370198 formate-dependent nitrite reductase complex subuni 99.4
PF12569 517 NARP1: NMDA receptor-regulated protein 1 ; InterPr 99.36
KOG1156 700 consensus N-terminal acetyltransferase [Chromatin 99.35
COG2956389 Predicted N-acetylglucosaminyl transferase [Carboh 99.34
KOG1130 639 consensus Predicted G-alpha GTPase interaction pro 99.33
TIGR02552135 LcrH_SycD type III secretion low calcium response 99.33
PRK04841903 transcriptional regulator MalT; Provisional 99.31
TIGR02552135 LcrH_SycD type III secretion low calcium response 99.3
COG2956389 Predicted N-acetylglucosaminyl transferase [Carboh 99.3
KOG0495913 consensus HAT repeat protein [RNA processing and m 99.27
KOG4682488 consensus Uncharacterized conserved protein, conta 99.26
KOG07831267 consensus Uncharacterized conserved protein, conta 99.22
KOG1130 639 consensus Predicted G-alpha GTPase interaction pro 99.22
KOG4648 536 consensus Uncharacterized conserved protein, conta 99.22
COG5010257 TadD Flp pilus assembly protein TadD, contains TPR 99.21
COG5010257 TadD Flp pilus assembly protein TadD, contains TPR 99.2
COG4785297 NlpI Lipoprotein NlpI, contains TPR repeats [Gener 99.19
KOG2376 652 consensus Signal recognition particle, subunit Srp 99.17
PRK15363157 pathogenicity island 2 chaperone protein SscA; Pro 99.15
KOG4648 536 consensus Uncharacterized conserved protein, conta 99.15
PRK14720 906 transcript cleavage factor/unknown domain fusion p 99.14
KOG1128777 consensus Uncharacterized conserved protein, conta 99.14
PLN03088356 SGT1, suppressor of G2 allele of SKP1; Provisional 99.13
COG3071400 HemY Uncharacterized enzyme of heme biosynthesis [ 99.1
PRK02603172 photosystem I assembly protein Ycf3; Provisional 99.09
PRK10153517 DNA-binding transcriptional activator CadC; Provis 99.09
KOG2376652 consensus Signal recognition particle, subunit Srp 99.08
PRK15363157 pathogenicity island 2 chaperone protein SscA; Pro 99.08
PLN03088 356 SGT1, suppressor of G2 allele of SKP1; Provisional 99.08
KOG3060289 consensus Uncharacterized conserved protein [Funct 99.08
PF1341469 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A 99.06
PF14938282 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 99.06
PF1341469 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A 99.05
PRK02603172 photosystem I assembly protein Ycf3; Provisional 99.05
PRK04841903 transcriptional regulator MalT; Provisional 99.04
KOG1128777 consensus Uncharacterized conserved protein, conta 99.02
CHL00033168 ycf3 photosystem I assembly protein Ycf3 99.01
CHL00033168 ycf3 photosystem I assembly protein Ycf3 99.0
COG0457291 NrfG FOG: TPR repeat [General function prediction 98.99
COG0457291 NrfG FOG: TPR repeat [General function prediction 98.97
TIGR02795119 tol_pal_ybgF tol-pal system protein YbgF. Members 98.96
TIGR02795119 tol_pal_ybgF tol-pal system protein YbgF. Members 98.96
COG4783484 Putative Zn-dependent protease, contains TPR repea 98.95
KOG3785557 consensus Uncharacterized conserved protein [Funct 98.93
COG3071400 HemY Uncharacterized enzyme of heme biosynthesis [ 98.93
PRK10153517 DNA-binding transcriptional activator CadC; Provis 98.93
PRK11906458 transcriptional regulator; Provisional 98.91
cd00189100 TPR Tetratricopeptide repeat domain; typically con 98.91
KOG1915 677 consensus Cell cycle control protein (crooked neck 98.91
COG4783484 Putative Zn-dependent protease, contains TPR repea 98.89
PRK10866243 outer membrane biogenesis protein BamD; Provisiona 98.89
COG4785297 NlpI Lipoprotein NlpI, contains TPR repeats [Gener 98.88
cd00189100 TPR Tetratricopeptide repeat domain; typically con 98.85
PF12569517 NARP1: NMDA receptor-regulated protein 1 ; InterPr 98.83
PF1343265 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL 98.82
KOG3060289 consensus Uncharacterized conserved protein [Funct 98.81
PRK11906458 transcriptional regulator; Provisional 98.8
PRK10866243 outer membrane biogenesis protein BamD; Provisiona 98.78
PF14938282 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 98.75
KOG4234271 consensus TPR repeat-containing protein [General f 98.75
KOG4340459 consensus Uncharacterized conserved protein [Funct 98.73
KOG0543397 consensus FKBP-type peptidyl-prolyl cis-trans isom 98.72
PF13525203 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M 98.72
KOG0543397 consensus FKBP-type peptidyl-prolyl cis-trans isom 98.7
PF1343265 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL 98.7
PRK10803263 tol-pal system protein YbgF; Provisional 98.69
KOG4555175 consensus TPR repeat-containing protein [Function 98.67
PRK10803263 tol-pal system protein YbgF; Provisional 98.67
PF09976145 TPR_21: Tetratricopeptide repeat; InterPro: IPR018 98.67
KOG4234271 consensus TPR repeat-containing protein [General f 98.66
PLN03098 453 LPA1 LOW PSII ACCUMULATION1; Provisional 98.65
KOG4555175 consensus TPR repeat-containing protein [Function 98.65
PLN03098453 LPA1 LOW PSII ACCUMULATION1; Provisional 98.64
COG4235287 Cytochrome c biogenesis factor [Posttranslational 98.64
PF04733290 Coatomer_E: Coatomer epsilon subunit; InterPro: IP 98.63
PF13525203 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M 98.63
PF12688120 TPR_5: Tetratrico peptide repeat 98.62
PF09976145 TPR_21: Tetratricopeptide repeat; InterPro: IPR018 98.62
PF1289584 Apc3: Anaphase-promoting complex, cyclosome, subun 98.62
PF1289584 Apc3: Anaphase-promoting complex, cyclosome, subun 98.61
COG4235287 Cytochrome c biogenesis factor [Posttranslational 98.59
PF04733290 Coatomer_E: Coatomer epsilon subunit; InterPro: IP 98.55
PF06552186 TOM20_plant: Plant specific mitochondrial import r 98.51
PF1342478 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 98.49
KOG4340459 consensus Uncharacterized conserved protein [Funct 98.48
KOG1915 677 consensus Cell cycle control protein (crooked neck 98.47
KOG2047 835 consensus mRNA splicing factor [RNA processing and 98.46
PF12688120 TPR_5: Tetratrico peptide repeat 98.42
KOG1941518 consensus Acetylcholine receptor-associated protei 98.38
PF06552186 TOM20_plant: Plant specific mitochondrial import r 98.36
PF1337173 TPR_9: Tetratricopeptide repeat 98.33
PF1337173 TPR_9: Tetratricopeptide repeat 98.28
KOG3785557 consensus Uncharacterized conserved protein [Funct 98.27
PRK15331165 chaperone protein SicA; Provisional 98.26
KOG1941 518 consensus Acetylcholine receptor-associated protei 98.25
PF1455968 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN 98.23
PF13512142 TPR_18: Tetratricopeptide repeat 98.23
PF09295395 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter 98.21
PRK15331165 chaperone protein SicA; Provisional 98.21
KOG0376476 consensus Serine-threonine phosphatase 2A, catalyt 98.17
PF1342478 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 98.16
COG4105254 ComL DNA uptake lipoprotein [General function pred 98.15
KOG2047 835 consensus mRNA splicing factor [RNA processing and 98.14
KOG0545329 consensus Aryl-hydrocarbon receptor-interacting pr 98.13
COG4105254 ComL DNA uptake lipoprotein [General function pred 98.07
KOG0376 476 consensus Serine-threonine phosphatase 2A, catalyt 98.05
PF1455968 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN 98.01
KOG07831267 consensus Uncharacterized conserved protein, conta 98.01
PF09295395 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter 98.0
KOG1308377 consensus Hsp70-interacting protein Hip/Transient 97.99
PF13512142 TPR_18: Tetratricopeptide repeat 97.99
COG1729262 Uncharacterized protein conserved in bacteria [Fun 97.98
KOG0511516 consensus Ankyrin repeat protein [General function 97.97
COG4700251 Uncharacterized protein conserved in bacteria cont 97.95
COG4700251 Uncharacterized protein conserved in bacteria cont 97.92
PF1343134 TPR_17: Tetratricopeptide repeat 97.9
PF1343134 TPR_17: Tetratricopeptide repeat 97.9
KOG4642284 consensus Chaperone-dependent E3 ubiquitin protein 97.87
KOG2053 932 consensus Mitochondrial inheritance and actin cyto 97.8
KOG0545329 consensus Aryl-hydrocarbon receptor-interacting pr 97.77
PF0051534 TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 97.75
PF0051534 TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 97.68
COG3898531 Uncharacterized membrane-bound protein [Function u 97.66
KOG10701710 consensus rRNA processing protein Rrp5 [RNA proces 97.64
KOG4642284 consensus Chaperone-dependent E3 ubiquitin protein 97.64
KOG3081299 consensus Vesicle coat complex COPI, epsilon subun 97.64
COG1729262 Uncharacterized protein conserved in bacteria [Fun 97.58
KOG2471696 consensus TPR repeat-containing protein [General f 97.56
KOG2838401 consensus Uncharacterized conserved protein, conta 97.54
PF0771934 TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 97.52
KOG2053 932 consensus Mitochondrial inheritance and actin cyto 97.52
KOG2716230 consensus Polymerase delta-interacting protein PDI 97.48
KOG3616 1636 consensus Selective LIM binding factor [Transcript 97.44
COG3898531 Uncharacterized membrane-bound protein [Function u 97.43
PF1342844 TPR_14: Tetratricopeptide repeat 97.42
PF0771934 TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 97.41
KOG1550552 consensus Extracellular protein SEL-1 and related 97.4
KOG1586288 consensus Protein required for fusion of vesicles 97.35
KOG1308377 consensus Hsp70-interacting protein Hip/Transient 97.22
KOG0551390 consensus Hsp90 co-chaperone CNS1 (contains TPR re 97.21
PF02259352 FAT: FAT domain; InterPro: IPR003151 The FAT domai 97.19
PF0221494 BTB_2: BTB/POZ domain; InterPro: IPR003131 Potassi 97.15
KOG2796366 consensus Uncharacterized conserved protein [Funct 97.15
KOG3617 1416 consensus WD40 and TPR repeat-containing protein [ 97.14
KOG2796366 consensus Uncharacterized conserved protein [Funct 97.1
PF13281374 DUF4071: Domain of unknown function (DUF4071) 97.09
KOG3617 1416 consensus WD40 and TPR repeat-containing protein [ 97.06
KOG0551 390 consensus Hsp90 co-chaperone CNS1 (contains TPR re 97.06
PF1342844 TPR_14: Tetratricopeptide repeat 97.03
PF04184 539 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for 97.0
KOG10701710 consensus rRNA processing protein Rrp5 [RNA proces 96.96
PF1318134 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ 96.95
COG2976207 Uncharacterized protein conserved in bacteria [Fun 96.92
KOG1550552 consensus Extracellular protein SEL-1 and related 96.92
PF10345608 Cohesin_load: Cohesin loading factor; InterPro: IP 96.82
PF1317636 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ 96.79
PF1318134 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ 96.75
KOG3473112 consensus RNA polymerase II transcription elongati 96.73
KOG3081299 consensus Vesicle coat complex COPI, epsilon subun 96.7
KOG0530318 consensus Protein farnesyltransferase, alpha subun 96.69
KOG1585308 consensus Protein required for fusion of vesicles 96.69
PF13281374 DUF4071: Domain of unknown function (DUF4071) 96.69
PF12968144 DUF3856: Domain of Unknown Function (DUF3856); Int 96.65
COG3118304 Thioredoxin domain-containing protein [Posttransla 96.53
KOG2610491 consensus Uncharacterized conserved protein [Funct 96.52
PF10300468 DUF3808: Protein of unknown function (DUF3808); In 96.51
KOG1586288 consensus Protein required for fusion of vesicles 96.49
PF10300468 DUF3808: Protein of unknown function (DUF3808); In 96.47
KOG2610491 consensus Uncharacterized conserved protein [Funct 96.42
KOG0530318 consensus Protein farnesyltransferase, alpha subun 96.38
PF02259352 FAT: FAT domain; InterPro: IPR003151 The FAT domai 96.35
KOG0985 1666 consensus Vesicle coat protein clathrin, heavy cha 96.34
PF04184539 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for 96.31
KOG2838401 consensus Uncharacterized conserved protein, conta 96.31
KOG1987297 consensus Speckle-type POZ protein SPOP and relate 96.24
PF03704146 BTAD: Bacterial transcriptional activator domain; 96.23
KOG3616 1636 consensus Selective LIM binding factor [Transcript 96.21
PF1317636 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ 96.19
PF03704146 BTAD: Bacterial transcriptional activator domain; 96.1
KOG0890 2382 consensus Protein kinase of the PI-3 kinase family 95.98
KOG2471 696 consensus TPR repeat-containing protein [General f 95.91
PF12968144 DUF3856: Domain of Unknown Function (DUF3856); Int 95.82
KOG1585308 consensus Protein required for fusion of vesicles 95.78
PF1317433 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_ 95.78
COG2976207 Uncharacterized protein conserved in bacteria [Fun 95.75
COG0790292 FOG: TPR repeat, SEL1 subfamily [General function 95.72
smart0002834 TPR Tetratricopeptide repeats. Repeats present in 95.51
PRK10941269 hypothetical protein; Provisional 95.33
KOG1310758 consensus WD40 repeat protein [General function pr 95.27
smart0002834 TPR Tetratricopeptide repeats. Repeats present in 95.25
KOG0985 1666 consensus Vesicle coat protein clathrin, heavy cha 95.2
PF08424321 NRDE-2: NRDE-2, necessary for RNA interference; In 95.14
PF1317433 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_ 94.98
COG2909 894 MalT ATP-dependent transcriptional regulator [Tran 94.97
KOG0529421 consensus Protein geranylgeranyltransferase type I 94.92
COG0790292 FOG: TPR repeat, SEL1 subfamily [General function 94.91
PF08631278 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: 94.78
PRK10941269 hypothetical protein; Provisional 94.75
PF1456190 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S 94.72
PF1485353 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe 94.7
PF1337442 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT 94.62
PF08631278 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: 94.53
COG2909894 MalT ATP-dependent transcriptional regulator [Tran 94.42
COG3118304 Thioredoxin domain-containing protein [Posttransla 94.36
smart00512104 Skp1 Found in Skp1 protein family. Family of Skp1 94.32
PF05843280 Suf: Suppressor of forked protein (Suf); InterPro: 94.15
KOG3824 472 consensus Huntingtin interacting protein HYPE [Gen 94.08
PF09986214 DUF2225: Uncharacterized protein conserved in bact 93.98
PF04781111 DUF627: Protein of unknown function (DUF627); Inte 93.89
PF1456190 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S 93.71
KOG1310 758 consensus WD40 repeat protein [General function pr 93.65
KOG3824472 consensus Huntingtin interacting protein HYPE [Gen 93.64
PF1337442 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT 93.55
COG3914 620 Spy Predicted O-linked N-acetylglucosamine transfe 93.51
COG4976287 Predicted methyltransferase (contains TPR repeat) 93.5
PF08424321 NRDE-2: NRDE-2, necessary for RNA interference; In 92.83
KOG1665302 consensus AFH1-interacting protein FIP2, contains 92.82
KOG2714465 consensus SETA binding protein SB1 and related pro 92.8
COG4941415 Predicted RNA polymerase sigma factor containing a 92.46
COG3914 620 Spy Predicted O-linked N-acetylglucosamine transfe 92.46
KOG2300629 consensus Uncharacterized conserved protein [Funct 92.41
PF0393162 Skp1_POZ: Skp1 family, tetramerisation domain; Int 92.4
PF1485353 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe 92.32
KOG3783546 consensus Uncharacterized conserved protein [Funct 92.27
PF1286294 Apc5: Anaphase-promoting complex subunit 5 92.24
PF04781111 DUF627: Protein of unknown function (DUF627); Inte 91.86
KOG4507886 consensus Uncharacterized conserved protein, conta 91.7
KOG4507 886 consensus Uncharacterized conserved protein, conta 91.65
PF05843280 Suf: Suppressor of forked protein (Suf); InterPro: 91.33
COG4649221 Uncharacterized protein conserved in bacteria [Fun 91.29
COG2912269 Uncharacterized conserved protein [Function unknow 91.22
COG4976 287 Predicted methyltransferase (contains TPR repeat) 90.96
PF04910360 Tcf25: Transcriptional repressor TCF25; InterPro: 90.8
PF04053443 Coatomer_WDAD: Coatomer WD associated region ; Int 90.55
PF1051638 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetrat 90.36
PF11822317 DUF3342: Domain of unknown function (DUF3342); Int 90.32
PF1057980 Rapsyn_N: Rapsyn N-terminal myristoylation and lin 89.69
KOG18391236 consensus Uncharacterized protein CLU1/cluA/TIF31 89.67
KOG4014248 consensus Uncharacterized conserved protein (conta 89.15
COG5159421 RPN6 26S proteasome regulatory complex component [ 89.1
PF1051638 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetrat 88.7
KOG1464 440 consensus COP9 signalosome, subunit CSN2 [Posttran 88.55
KOG3840438 consensus Uncharaterized conserved protein, contai 88.26
PF15015 569 NYD-SP12_N: Spermatogenesis-associated, N-terminal 88.1
KOG0511516 consensus Ankyrin repeat protein [General function 87.9
COG2912269 Uncharacterized conserved protein [Function unknow 87.74
PRK13184932 pknD serine/threonine-protein kinase; Reviewed 86.52
PF11207203 DUF2989: Protein of unknown function (DUF2989); In 86.35
PF0772126 TPR_4: Tetratricopeptide repeat; InterPro: IPR0117 85.1
PF07079549 DUF1347: Protein of unknown function (DUF1347); In 84.55
KOG18391236 consensus Uncharacterized protein CLU1/cluA/TIF31 84.3
PF10602177 RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 84.08
KOG0529421 consensus Protein geranylgeranyltransferase type I 83.92
cd0268275 MIT_AAA_Arch MIT: domain contained within Microtub 83.69
PF0772036 TPR_3: Tetratricopeptide repeat; InterPro: IPR0117 83.36
COG4649221 Uncharacterized protein conserved in bacteria [Fun 82.72
PF1057980 Rapsyn_N: Rapsyn N-terminal myristoylation and lin 82.67
PF00244236 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14 82.52
PRK15180 831 Vi polysaccharide biosynthesis protein TviD; Provi 82.34
PF09613160 HrpB1_HrpK: Bacterial type III secretion protein ( 82.31
PRK15180 831 Vi polysaccharide biosynthesis protein TviD; Provi 82.25
PF0772126 TPR_4: Tetratricopeptide repeat; InterPro: IPR0117 81.94
KOG0546372 consensus HSP90 co-chaperone CPR7/Cyclophilin [Pos 81.16
KOG2041 1189 consensus WD40 repeat protein [General function pr 81.03
PF10602177 RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 80.82
PF00244236 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14 80.51
PF1286294 Apc5: Anaphase-promoting complex subunit 5 80.42
KOG3364149 consensus Membrane protein involved in organellar 80.02
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] Back     alignment and domain information 
Probab=100.00  E-value=3.4e-48  Score=424.65  Aligned_cols=376  Identities=17%  Similarity=0.115  Sum_probs=344.5

Q ss_pred             HHHHHHHHHHHHHHhhccchHHHHHHHHHHHhccc--hhhHhhHHHHHHhcCCHHHHHHHHHHhHhccCCchHHHHHhhh
Q 003249          380 RQRLLAFHQLGCVRLLRKEYDEAEHLFEAAVNAGH--IYSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSL  457 (836)
Q Consensus       380 ~~~a~a~~~lG~~~~~~g~y~eAi~~f~~Al~l~~--~~a~~~la~~~~~~G~~~~A~~~~~~ai~~~~~~~~ay~~r~~  457 (836)
                      ++-+++|-|+|+++-++|++++|+..|+.+|+++|  .++|.++|.++..+|+...|..+|..++.++|.+..+....|.
T Consensus       113 ~q~ae~ysn~aN~~kerg~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alqlnP~l~ca~s~lgn  192 (966)
T KOG4626|consen  113 PQGAEAYSNLANILKERGQLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQLNPDLYCARSDLGN  192 (966)
T ss_pred             chHHHHHHHHHHHHHHhchHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchhhhhcchhH
Confidence            45678999999999999999999999999999976  4699999999999999999999999999999965444433332


Q ss_pred             c----CChhhHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-hHHHHHHHHHHHhcCCHHHHH
Q 003249          458 Y----CEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAAL  532 (836)
Q Consensus       458 ~----~~~~eAi~d~~kAi~ldP~~~~ay~~rg~~l~~~g~~~eAi~~~~kai~l~P~-~~~~~~rg~~~~~lg~~~~Ai  532 (836)
                      +    |+..||.++|-+||+.+|.++-+|.++|.++..+|+...||..|.+|++++|+ +++|.|+|.+|.+++.+++|+
T Consensus       193 Llka~Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Av  272 (966)
T KOG4626|consen  193 LLKAEGRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAV  272 (966)
T ss_pred             HHHhhcccchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHH
Confidence            1    33399999999999999999999999999999999999999999999999999 699999999999999999999


Q ss_pred             HHHHHHHhhCCCchhhhhhHHHHHHHHHHHHHhhhHhHHHHHHhhhhccCcccccchHHHHHHHHhcCCCCHHHHHHHHH
Q 003249          533 CDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSL  612 (836)
Q Consensus       533 ~d~~~al~l~P~~~~~~~~~~~~~~~~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~aL~~~~~al~~~P~~~~~~~~~gl  612 (836)
                      .+|.+|+.+.|+++.++++++..      |-..++.+.                  ++..|.++|+++|+..++|.|+|.
T Consensus       273 s~Y~rAl~lrpn~A~a~gNla~i------YyeqG~ldl------------------AI~~Ykral~~~P~F~~Ay~Nlan  328 (966)
T KOG4626|consen  273 SCYLRALNLRPNHAVAHGNLACI------YYEQGLLDL------------------AIDTYKRALELQPNFPDAYNNLAN  328 (966)
T ss_pred             HHHHHHHhcCCcchhhccceEEE------EeccccHHH------------------HHHHHHHHHhcCCCchHHHhHHHH
Confidence            99999999999999999987642      222222222                  488999999999999999999999


Q ss_pred             HHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccchHHHHHHHHHhhccccCCCChh
Q 003249          613 LLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYALADSSQDSSCSS  692 (836)
Q Consensus       613 ~l~~l~~~~eAl~~~~~Al~l~P~~~eal~~~G~il~~~G~~eeAl~~~~~Ai~l~p~~~a~~~~a~aL~~~~l~~~~~~  692 (836)
                      ++...|+..||.++|++|+.+.|+++++++|+|.++.++|.+++|+..|.+|++..|.+                     
T Consensus       329 ALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~p~~---------------------  387 (966)
T KOG4626|consen  329 ALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGKIEEATRLYLKALEVFPEF---------------------  387 (966)
T ss_pred             HHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccchHHHHHHHHHHhhChhh---------------------
Confidence            99999999999999999999999999999999999999999999999999999999988                     


Q ss_pred             HHHHHHHHHhcCCccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCch--hHHhhHHHHHHhcCCHHHHHHHHHHH
Q 003249          693 TVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRHT--RAHQGLARVHFLKNNKTTAYEEMTKL  770 (836)
Q Consensus       693 ~~i~~l~~Al~~~~~~~~~~~a~~nlG~~y~~~g~~deAi~~y~kAL~l~~~--~A~~~la~~~~~~g~~~~A~~~~~ka  770 (836)
                                         +.+++|||.+|.++|++++|+.||+.||.|+|+  .|+.|+|.+|...|+.++|+..|++|
T Consensus       388 -------------------aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v~~A~q~y~rA  448 (966)
T KOG4626|consen  388 -------------------AAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDVSAAIQCYTRA  448 (966)
T ss_pred             -------------------hhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhHHHHHHHHHHH
Confidence                               458999999999999999999999999999986  78999999999999999999999999


Q ss_pred             HHhcCCCHHHHHHHHH----ccCHHHHHHHHHHhHhcCCCCcccchhhHHHHH
Q 003249          771 IKKARNNASAYEKRSE----YCDRELTRADLEMVTQLDPLRVYPYRYRAAGLI  819 (836)
Q Consensus       771 ie~~p~~a~Ay~~r~~----~~~~~~A~~D~~~Ai~l~P~~~~~y~~r~~~~~  819 (836)
                      |.++|..|+|+.|++.    -|+..+||..|.+|++|+|+.+.||-+|+-++.
T Consensus       449 I~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA~cNllh~lq  501 (966)
T KOG4626|consen  449 IQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDAYCNLLHCLQ  501 (966)
T ss_pred             HhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCchhhhHHHHHHH
Confidence            9999999999999953    388999999999999999999999999987764

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] Back     alignment and domain information
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) Back     alignment and domain information
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein Back     alignment and domain information
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein Back     alignment and domain information
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) Back     alignment and domain information
>PRK11447 cellulose synthase subunit BcsC; Provisional Back     alignment and domain information
>PRK11447 cellulose synthase subunit BcsC; Provisional Back     alignment and domain information
>PRK15174 Vi polysaccharide export protein VexE; Provisional Back     alignment and domain information
>PRK15174 Vi polysaccharide export protein VexE; Provisional Back     alignment and domain information
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional Back     alignment and domain information
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PRK10049 pgaA outer membrane protein PgaA; Provisional Back     alignment and domain information
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] Back     alignment and domain information
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional Back     alignment and domain information
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PRK10049 pgaA outer membrane protein PgaA; Provisional Back     alignment and domain information
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] Back     alignment and domain information
>PRK11788 tetratricopeptide repeat protein; Provisional Back     alignment and domain information
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] Back     alignment and domain information
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK11788 tetratricopeptide repeat protein; Provisional Back     alignment and domain information
>PHA02713 hypothetical protein; Provisional Back     alignment and domain information
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only] Back     alignment and domain information
>PRK12370 invasion protein regulator; Provisional Back     alignment and domain information
>PRK11189 lipoprotein NlpI; Provisional Back     alignment and domain information
>PHA02790 Kelch-like protein; Provisional Back     alignment and domain information
>PRK14574 hmsH outer membrane protein; Provisional Back     alignment and domain information
>PRK11189 lipoprotein NlpI; Provisional Back     alignment and domain information
>PHA03098 kelch-like protein; Provisional Back     alignment and domain information
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK12370 invasion protein regulator; Provisional Back     alignment and domain information
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] Back     alignment and domain information
>PRK14574 hmsH outer membrane protein; Provisional Back     alignment and domain information
>PLN02789 farnesyltranstransferase Back     alignment and domain information
>PLN02789 farnesyltranstransferase Back     alignment and domain information
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG4350 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only] Back     alignment and domain information
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] Back     alignment and domain information
>TIGR00540 hemY_coli hemY protein Back     alignment and domain information
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B Back     alignment and domain information
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW Back     alignment and domain information
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW Back     alignment and domain information
>KOG1125 consensus TPR repeat-containing protein [General function prediction only] Back     alignment and domain information
>PRK10747 putative protoheme IX biogenesis protein; Provisional Back     alignment and domain information
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B Back     alignment and domain information
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1125 consensus TPR repeat-containing protein [General function prediction only] Back     alignment and domain information
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] Back     alignment and domain information
>TIGR00540 hemY_coli hemY protein Back     alignment and domain information
>PRK15359 type III secretion system chaperone protein SscB; Provisional Back     alignment and domain information
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional Back     alignment and domain information
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] Back     alignment and domain information
>KOG2003 consensus TPR repeat-containing protein [General function prediction only] Back     alignment and domain information
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] Back     alignment and domain information
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] Back     alignment and domain information
>KOG2075 consensus Topoisomerase TOP1-interacting protein BTBD1 [Function unknown] Back     alignment and domain information
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] Back     alignment and domain information
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] Back     alignment and domain information
>KOG1129 consensus TPR repeat-containing protein [General function prediction only] Back     alignment and domain information
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals Back     alignment and domain information
>KOG1840 consensus Kinesin light chain [Cytoskeleton] Back     alignment and domain information
>KOG2003 consensus TPR repeat-containing protein [General function prediction only] Back     alignment and domain information
>PRK15359 type III secretion system chaperone protein SscB; Provisional Back     alignment and domain information
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO Back     alignment and domain information
>PLN03077 Protein ECB2; Provisional Back     alignment and domain information
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals Back     alignment and domain information
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] Back     alignment and domain information
>PLN03077 Protein ECB2; Provisional Back     alignment and domain information
>PF00651 BTB: BTB/POZ domain; InterPro: IPR013069 The BTB (for BR-C, ttk and bab) [] or POZ (for Pox virus and Zinc finger) [] domain is present near the N terminus of a fraction of zinc finger (IPR007087 from INTERPRO) proteins and in proteins that contain the IPR006652 from INTERPRO motif such as Kelch and a family of pox virus proteins Back     alignment and domain information
>PLN03218 maturation of RBCL 1; Provisional Back     alignment and domain information
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional Back     alignment and domain information
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1129 consensus TPR repeat-containing protein [General function prediction only] Back     alignment and domain information
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO Back     alignment and domain information
>PRK10747 putative protoheme IX biogenesis protein; Provisional Back     alignment and domain information
>smart00225 BTB Broad-Complex, Tramtrack and Bric a brac Back     alignment and domain information
>PLN03218 maturation of RBCL 1; Provisional Back     alignment and domain information
>KOG1840 consensus Kinesin light chain [Cytoskeleton] Back     alignment and domain information
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional Back     alignment and domain information
>KOG4591 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only] Back     alignment and domain information
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] Back     alignment and domain information
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional Back     alignment and domain information
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional Back     alignment and domain information
>KOG0553 consensus TPR repeat-containing protein [General function prediction only] Back     alignment and domain information
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional Back     alignment and domain information
>KOG0495 consensus HAT repeat protein [RNA processing and modification] Back     alignment and domain information
>KOG0553 consensus TPR repeat-containing protein [General function prediction only] Back     alignment and domain information
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional Back     alignment and domain information
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala Back     alignment and domain information
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] Back     alignment and domain information
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] Back     alignment and domain information
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] Back     alignment and domain information
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD Back     alignment and domain information
>PRK04841 transcriptional regulator MalT; Provisional Back     alignment and domain information
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD Back     alignment and domain information
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] Back     alignment and domain information
>KOG0495 consensus HAT repeat protein [RNA processing and modification] Back     alignment and domain information
>KOG4682 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only] Back     alignment and domain information
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown] Back     alignment and domain information
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] Back     alignment and domain information
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] Back     alignment and domain information
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] Back     alignment and domain information
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] Back     alignment and domain information
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] Back     alignment and domain information
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional Back     alignment and domain information
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] Back     alignment and domain information
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional Back     alignment and domain information
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] Back     alignment and domain information
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional Back     alignment and domain information
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] Back     alignment and domain information
>PRK02603 photosystem I assembly protein Ycf3; Provisional Back     alignment and domain information
>PRK10153 DNA-binding transcriptional activator CadC; Provisional Back     alignment and domain information
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional Back     alignment and domain information
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional Back     alignment and domain information
>KOG3060 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A Back     alignment and domain information
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A Back     alignment and domain information
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A Back     alignment and domain information
>PRK02603 photosystem I assembly protein Ycf3; Provisional Back     alignment and domain information
>PRK04841 transcriptional regulator MalT; Provisional Back     alignment and domain information
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] Back     alignment and domain information
>CHL00033 ycf3 photosystem I assembly protein Ycf3 Back     alignment and domain information
>CHL00033 ycf3 photosystem I assembly protein Ycf3 Back     alignment and domain information
>COG0457 NrfG FOG: TPR repeat [General function prediction only] Back     alignment and domain information
>COG0457 NrfG FOG: TPR repeat [General function prediction only] Back     alignment and domain information
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF Back     alignment and domain information
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF Back     alignment and domain information
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] Back     alignment and domain information
>KOG3785 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] Back     alignment and domain information
>PRK10153 DNA-binding transcriptional activator CadC; Provisional Back     alignment and domain information
>PRK11906 transcriptional regulator; Provisional Back     alignment and domain information
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C Back     alignment and domain information
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] Back     alignment and domain information
>PRK10866 outer membrane biogenesis protein BamD; Provisional Back     alignment and domain information
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] Back     alignment and domain information
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C Back     alignment and domain information
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala Back     alignment and domain information
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B Back     alignment and domain information
>KOG3060 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PRK11906 transcriptional regulator; Provisional Back     alignment and domain information
>PRK10866 outer membrane biogenesis protein BamD; Provisional Back     alignment and domain information
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A Back     alignment and domain information
>KOG4234 consensus TPR repeat-containing protein [General function prediction only] Back     alignment and domain information
>KOG4340 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A Back     alignment and domain information
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B Back     alignment and domain information
>PRK10803 tol-pal system protein YbgF; Provisional Back     alignment and domain information
>KOG4555 consensus TPR repeat-containing protein [Function unknown] Back     alignment and domain information
>PRK10803 tol-pal system protein YbgF; Provisional Back     alignment and domain information
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function Back     alignment and domain information
>KOG4234 consensus TPR repeat-containing protein [General function prediction only] Back     alignment and domain information
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional Back     alignment and domain information
>KOG4555 consensus TPR repeat-containing protein [Function unknown] Back     alignment and domain information
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional Back     alignment and domain information
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment Back     alignment and domain information
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A Back     alignment and domain information
>PF12688 TPR_5: Tetratrico peptide repeat Back     alignment and domain information
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function Back     alignment and domain information
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A Back     alignment and domain information
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A Back     alignment and domain information
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment Back     alignment and domain information
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins Back     alignment and domain information
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H Back     alignment and domain information
>KOG4340 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG2047 consensus mRNA splicing factor [RNA processing and modification] Back     alignment and domain information
>PF12688 TPR_5: Tetratrico peptide repeat Back     alignment and domain information
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] Back     alignment and domain information
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins Back     alignment and domain information
>PF13371 TPR_9: Tetratricopeptide repeat Back     alignment and domain information
>PF13371 TPR_9: Tetratricopeptide repeat Back     alignment and domain information
>KOG3785 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PRK15331 chaperone protein SicA; Provisional Back     alignment and domain information
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] Back     alignment and domain information
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A Back     alignment and domain information
>PF13512 TPR_18: Tetratricopeptide repeat Back     alignment and domain information
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi Back     alignment and domain information
>PRK15331 chaperone protein SicA; Provisional Back     alignment and domain information
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only] Back     alignment and domain information
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H Back     alignment and domain information
>COG4105 ComL DNA uptake lipoprotein [General function prediction only] Back     alignment and domain information
>KOG2047 consensus mRNA splicing factor [RNA processing and modification] Back     alignment and domain information
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>COG4105 ComL DNA uptake lipoprotein [General function prediction only] Back     alignment and domain information
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only] Back     alignment and domain information
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A Back     alignment and domain information
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown] Back     alignment and domain information
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi Back     alignment and domain information
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] Back     alignment and domain information
>PF13512 TPR_18: Tetratricopeptide repeat Back     alignment and domain information
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown] Back     alignment and domain information
>KOG0511 consensus Ankyrin repeat protein [General function prediction only] Back     alignment and domain information
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] Back     alignment and domain information
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] Back     alignment and domain information
>PF13431 TPR_17: Tetratricopeptide repeat Back     alignment and domain information
>PF13431 TPR_17: Tetratricopeptide repeat Back     alignment and domain information
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] Back     alignment and domain information
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] Back     alignment and domain information
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] Back     alignment and domain information
>COG3898 Uncharacterized membrane-bound protein [Function unknown] Back     alignment and domain information
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] Back     alignment and domain information
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown] Back     alignment and domain information
>KOG2471 consensus TPR repeat-containing protein [General function prediction only] Back     alignment and domain information
>KOG2838 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only] Back     alignment and domain information
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] Back     alignment and domain information
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] Back     alignment and domain information
>KOG2716 consensus Polymerase delta-interacting protein PDIP1 and related proteins, contain BTB/POZ domain [Inorganic ion transport and metabolism] Back     alignment and domain information
>KOG3616 consensus Selective LIM binding factor [Transcription] Back     alignment and domain information
>COG3898 Uncharacterized membrane-bound protein [Function unknown] Back     alignment and domain information
>PF13428 TPR_14: Tetratricopeptide repeat Back     alignment and domain information
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] Back     alignment and domain information
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] Back     alignment and domain information
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] Back     alignment and domain information
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases Back     alignment and domain information
>PF02214 BTB_2: BTB/POZ domain; InterPro: IPR003131 Potassium channels are the most diverse group of the ion channel family [, ] Back     alignment and domain information
>KOG2796 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] Back     alignment and domain information
>KOG2796 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF13281 DUF4071: Domain of unknown function (DUF4071) Back     alignment and domain information
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] Back     alignment and domain information
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF13428 TPR_14: Tetratricopeptide repeat Back     alignment and domain information
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene Back     alignment and domain information
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] Back     alignment and domain information
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A Back     alignment and domain information
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown] Back     alignment and domain information
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] Back     alignment and domain information
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi Back     alignment and domain information
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A Back     alignment and domain information
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A Back     alignment and domain information
>KOG3473 consensus RNA polymerase II transcription elongation factor Elongin/SIII, subunit elongin C [Transcription] Back     alignment and domain information
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF13281 DUF4071: Domain of unknown function (DUF4071) Back     alignment and domain information
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT Back     alignment and domain information
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG2610 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans Back     alignment and domain information
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans Back     alignment and domain information
>KOG2610 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases Back     alignment and domain information
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene Back     alignment and domain information
>KOG2838 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only] Back     alignment and domain information
>KOG1987 consensus Speckle-type POZ protein SPOP and related proteins with TRAF, MATH and BTB/POZ domains [Cell cycle control, cell division, chromosome partitioning; General function prediction only] Back     alignment and domain information
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production Back     alignment and domain information
>KOG3616 consensus Selective LIM binding factor [Transcription] Back     alignment and domain information
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A Back     alignment and domain information
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production Back     alignment and domain information
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG2471 consensus TPR repeat-containing protein [General function prediction only] Back     alignment and domain information
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT Back     alignment and domain information
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A Back     alignment and domain information
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown] Back     alignment and domain information
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only] Back     alignment and domain information
>smart00028 TPR Tetratricopeptide repeats Back     alignment and domain information
>PRK10941 hypothetical protein; Provisional Back     alignment and domain information
>KOG1310 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>smart00028 TPR Tetratricopeptide repeats Back     alignment and domain information
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function Back     alignment and domain information
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A Back     alignment and domain information
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription] Back     alignment and domain information
>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only] Back     alignment and domain information
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] Back     alignment and domain information
>PRK10941 hypothetical protein; Provisional Back     alignment and domain information
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B Back     alignment and domain information
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A Back     alignment and domain information
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A Back     alignment and domain information
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] Back     alignment and domain information
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription] Back     alignment and domain information
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>smart00512 Skp1 Found in Skp1 protein family Back     alignment and domain information
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins Back     alignment and domain information
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only] Back     alignment and domain information
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function Back     alignment and domain information
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function Back     alignment and domain information
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B Back     alignment and domain information
>KOG1310 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only] Back     alignment and domain information
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A Back     alignment and domain information
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only] Back     alignment and domain information
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function Back     alignment and domain information
>KOG1665 consensus AFH1-interacting protein FIP2, contains BTB/POZ domain and pentapeptide repeats [General function prediction only] Back     alignment and domain information
>KOG2714 consensus SETA binding protein SB1 and related proteins, contain BTB/POZ domain [General function prediction only] Back     alignment and domain information
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription] Back     alignment and domain information
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG2300 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF03931 Skp1_POZ: Skp1 family, tetramerisation domain; InterPro: IPR016073 SKP1 (together with SKP2) was identified as an essential component of the cyclin A-CDK2 S phase kinase complex [] Back     alignment and domain information
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A Back     alignment and domain information
>KOG3783 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF12862 Apc5: Anaphase-promoting complex subunit 5 Back     alignment and domain information
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function Back     alignment and domain information
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown] Back     alignment and domain information
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown] Back     alignment and domain information
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins Back     alignment and domain information
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown] Back     alignment and domain information
>COG2912 Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only] Back     alignment and domain information
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ] Back     alignment and domain information
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment Back     alignment and domain information
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ] Back     alignment and domain information
>PF11822 DUF3342: Domain of unknown function (DUF3342); InterPro: IPR021777 This family of proteins are functionally uncharacterised Back     alignment and domain information
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane Back     alignment and domain information
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only] Back     alignment and domain information
>KOG4014 consensus Uncharacterized conserved protein (contains TPR repeat) [Function unknown] Back     alignment and domain information
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ] Back     alignment and domain information
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] Back     alignment and domain information
>KOG3840 consensus Uncharaterized conserved protein, contains BTB/POZ domain [General function prediction only] Back     alignment and domain information
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal Back     alignment and domain information
>KOG0511 consensus Ankyrin repeat protein [General function prediction only] Back     alignment and domain information
>COG2912 Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PRK13184 pknD serine/threonine-protein kinase; Reviewed Back     alignment and domain information
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed Back     alignment and domain information
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models Back     alignment and domain information
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length Back     alignment and domain information
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only] Back     alignment and domain information
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome Back     alignment and domain information
>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules Back     alignment and domain information
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [] Back     alignment and domain information
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown] Back     alignment and domain information
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane Back     alignment and domain information
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ] Back     alignment and domain information
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional Back     alignment and domain information
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia Back     alignment and domain information
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional Back     alignment and domain information
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models Back     alignment and domain information
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG2041 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome Back     alignment and domain information
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ] Back     alignment and domain information
>PF12862 Apc5: Anaphase-promoting complex subunit 5 Back     alignment and domain information
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query836
2y4t_A450 DNAJ homolog subfamily C member 3; chaperone, endo 3e-15
2y4t_A450 DNAJ homolog subfamily C member 3; chaperone, endo 1e-08
2y4t_A 450 DNAJ homolog subfamily C member 3; chaperone, endo 1e-06
3ieg_A359 DNAJ homolog subfamily C member 3; TPR motif, chap 5e-13
3ieg_A 359 DNAJ homolog subfamily C member 3; TPR motif, chap 1e-05
3ieg_A359 DNAJ homolog subfamily C member 3; TPR motif, chap 3e-05
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-10
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-07
1vt4_I1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-07
3htm_A172 Speckle-type POZ protein; BTB, SPOP, ubiquitin, li 5e-10
3hqi_A312 Speckle-type POZ protein; SPOP, ubiquitin, puckere 5e-10
3fp2_A 537 TPR repeat-containing protein YHR117W; TOM71, mito 6e-10
3fp2_A537 TPR repeat-containing protein YHR117W; TOM71, mito 3e-07
3fp2_A537 TPR repeat-containing protein YHR117W; TOM71, mito 4e-06
3fp2_A 537 TPR repeat-containing protein YHR117W; TOM71, mito 1e-05
3fp2_A537 TPR repeat-containing protein YHR117W; TOM71, mito 7e-04
4eoz_A145 Speckle-type POZ protein; E3 ubiquitin ligase, nuc 3e-09
2gw1_A 514 Mitochondrial precursor proteins import receptor; 4e-08
2gw1_A514 Mitochondrial precursor proteins import receptor; 3e-07
2gw1_A514 Mitochondrial precursor proteins import receptor; 2e-06
2xpi_A597 Anaphase-promoting complex subunit CUT9; cell cycl 7e-08
2xpi_A597 Anaphase-promoting complex subunit CUT9; cell cycl 2e-06
2xpi_A597 Anaphase-promoting complex subunit CUT9; cell cycl 4e-06
2xpi_A 597 Anaphase-promoting complex subunit CUT9; cell cycl 9e-05
2ho1_A252 Type 4 fimbrial biogenesis protein PILF; type IV p 8e-08
2ho1_A252 Type 4 fimbrial biogenesis protein PILF; type IV p 6e-05
1w3b_A388 UDP-N-acetylglucosamine--peptide N-acetylglucosami 1e-07
1w3b_A 388 UDP-N-acetylglucosamine--peptide N-acetylglucosami 3e-06
1w3b_A388 UDP-N-acetylglucosamine--peptide N-acetylglucosami 1e-04
2vsy_A 568 XCC0866; transferase, glycosyl transferase, GT-B, 3e-07
3u4t_A272 TPR repeat-containing protein; structural genomics 6e-07
3u4t_A272 TPR repeat-containing protein; structural genomics 9e-04
3v6t_A499 DHAX3; tandem repeats, DNA specific binding protei 7e-07
3v6t_A499 DHAX3; tandem repeats, DNA specific binding protei 8e-04
3urz_A208 Uncharacterized protein; tetratricopeptide repeats 8e-07
3urz_A208 Uncharacterized protein; tetratricopeptide repeats 4e-04
2vkp_A109 BTB/POZ domain-containing protein 6; protein-bindi 8e-07
4g1t_A472 Interferon-induced protein with tetratricopeptide 2e-06
4g1t_A 472 Interferon-induced protein with tetratricopeptide 2e-04
4g1t_A472 Interferon-induced protein with tetratricopeptide 3e-04
3hym_B330 Cell division cycle protein 16 homolog; APC, anaph 6e-06
1hxi_A121 PEX5, peroxisome targeting signal 1 receptor PEX5; 8e-06
1hxi_A121 PEX5, peroxisome targeting signal 1 receptor PEX5; 3e-04
4abn_A474 Tetratricopeptide repeat protein 5; P53 cofactor, 9e-06
4eqf_A 365 PEX5-related protein; accessory protein, tetratric 1e-05
4a1s_A411 PINS, partner of inscuteable; cell cycle, LGN, mit 1e-05
4a1s_A 411 PINS, partner of inscuteable; cell cycle, LGN, mit 2e-05
4a1s_A411 PINS, partner of inscuteable; cell cycle, LGN, mit 4e-05
4a1s_A411 PINS, partner of inscuteable; cell cycle, LGN, mit 6e-05
3tax_A 723 UDP-N-acetylglucosamine--peptide N- acetylglucosam 2e-05
3tax_A 723 UDP-N-acetylglucosamine--peptide N- acetylglucosam 3e-05
3ro3_A164 PINS homolog, G-protein-signaling modulator 2; asy 2e-05
3ro3_A164 PINS homolog, G-protein-signaling modulator 2; asy 5e-05
3ro3_A164 PINS homolog, G-protein-signaling modulator 2; asy 3e-04
3ulq_A383 Response regulator aspartate phosphatase F; tetrat 3e-05
2vq2_A225 PILW, putative fimbrial biogenesis and twitching m 3e-05
3k9i_A117 BH0479 protein; putative protein binding protein, 3e-05
3sf4_A 406 G-protein-signaling modulator 2; tetratricopeptide 4e-05
3sf4_A406 G-protein-signaling modulator 2; tetratricopeptide 8e-05
3sf4_A406 G-protein-signaling modulator 2; tetratricopeptide 3e-04
3sf4_A406 G-protein-signaling modulator 2; tetratricopeptide 5e-04
3sf4_A 406 G-protein-signaling modulator 2; tetratricopeptide 7e-04
3q15_A378 PSP28, response regulator aspartate phosphatase H; 7e-05
3q15_A378 PSP28, response regulator aspartate phosphatase H; 3e-04
3gw4_A203 Uncharacterized protein; structural genomics, PSI- 7e-05
3gw4_A203 Uncharacterized protein; structural genomics, PSI- 9e-05
3gw4_A203 Uncharacterized protein; structural genomics, PSI- 3e-04
2pl2_A217 Hypothetical conserved protein TTC0263; TPR, prote 1e-04
2pl2_A217 Hypothetical conserved protein TTC0263; TPR, prote 5e-04
2pl2_A217 Hypothetical conserved protein TTC0263; TPR, prote 8e-04
3ma5_A100 Tetratricopeptide repeat domain protein; NESG, str 2e-04
3ro2_A338 PINS homolog, G-protein-signaling modulator 2; TPR 2e-04
3ro2_A 338 PINS homolog, G-protein-signaling modulator 2; TPR 2e-04
3ro2_A 338 PINS homolog, G-protein-signaling modulator 2; TPR 2e-04
3ro2_A338 PINS homolog, G-protein-signaling modulator 2; TPR 3e-04
1xnf_A275 Lipoprotein NLPI; TPR, tetratricopeptide, structur 2e-04
1xnf_A 275 Lipoprotein NLPI; TPR, tetratricopeptide, structur 6e-04
1fch_A 368 Peroxisomal targeting signal 1 receptor; protein-p 2e-04
3ugm_A 1047 TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan 2e-04
3ugm_A 1047 TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan 4e-04
3ugm_A 1047 TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan 8e-04
1na3_A91 Designed protein CTPR2; de novo protein; HET: IPT; 3e-04
3as5_A186 MAMA; tetratricopeptide repeats (TPR) containing p 3e-04
2fo7_A136 Synthetic consensus TPR protein; tetratricopeptide 3e-04
1r29_A127 B-cell lymphoma 6 protein; BTB domain, transcripti 5e-04
2if5_A120 Zinc finger and BTB domain-containing protein 7A; 5e-04
1na0_A125 Designed protein CTPR3; de novo protein; HET: IPT; 8e-04
3uq3_A258 Heat shock protein STI1; HSP90, peptide binding, c 9e-04
2kat_A115 Uncharacterized protein; NESG, structure, structur 9e-04
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450 Back     alignment and structure
 Score = 78.2 bits (193), Expect = 3e-15
 Identities = 47/337 (13%), Positives = 103/337 (30%), Gaps = 28/337 (8%)

Query: 466 EDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRIL----GFKLALECLELRFCF 521
                A   DP     Y  RA+  +     +AAL ++ +++     F  A   L+     
Sbjct: 47  SQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAAR--LQRGHLL 104

Query: 522 FLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRW 581
            L       A  D + +L  +P     +    A    +   E     + A         +
Sbjct: 105 -LKQGKLDEAEDDFKKVLKSNPSENEEK---EAQSQLIKSDEMQRLRSQALNAFGS-GDY 159

Query: 582 SSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERL 641
           ++      ++ + ++LE       L   ++   ++   P  A+  L+ A +    + E  
Sbjct: 160 TAA-----IAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAF 214

Query: 642 VYEGWILYDTSHCEEGLRKAEESIQMK---------RSFEAFFLKAYALADSSQDSSCSS 692
                + Y     E  L +  E +++                  K    A+        +
Sbjct: 215 YKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYT 274

Query: 693 TVVSLLEDALKC-PSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIR--HTRAHQG 749
              S  E  +K  PS      ++   +   +    +   A    S  L++   +  A + 
Sbjct: 275 DATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKD 334

Query: 750 LARVHFLKNNKTTAYEEMTKLIKKARNNASAYEKRSE 786
            A  + ++     A ++     +   N+    E   +
Sbjct: 335 RAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEK 371
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450 Back     alignment and structure
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450 Back     alignment and structure
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359 Back     alignment and structure
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359 Back     alignment and structure
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>3htm_A Speckle-type POZ protein; BTB, SPOP, ubiquitin, ligase, nucleus, UBL conjugation pathway, protein binding; 2.50A {Homo sapiens} Length = 172 Back     alignment and structure
>3hqi_A Speckle-type POZ protein; SPOP, ubiquitin, puckered, nucleus, UBL conjugation pathway, protein binding, ligase; 2.62A {Homo sapiens} PDB: 3hu6_A Length = 312 Back     alignment and structure
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537 Back     alignment and structure
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537 Back     alignment and structure
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537 Back     alignment and structure
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537 Back     alignment and structure
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537 Back     alignment and structure
>4eoz_A Speckle-type POZ protein; E3 ubiquitin ligase, nucleus, protein binding; 2.40A {Homo sapiens} Length = 145 Back     alignment and structure
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514 Back     alignment and structure
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514 Back     alignment and structure
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514 Back     alignment and structure
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597 Back     alignment and structure
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597 Back     alignment and structure
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597 Back     alignment and structure
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597 Back     alignment and structure
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252 Back     alignment and structure
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252 Back     alignment and structure
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388 Back     alignment and structure
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388 Back     alignment and structure
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388 Back     alignment and structure
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568 Back     alignment and structure
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272 Back     alignment and structure
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272 Back     alignment and structure
>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499 Back     alignment and structure
>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499 Back     alignment and structure
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208 Back     alignment and structure
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208 Back     alignment and structure
>2vkp_A BTB/POZ domain-containing protein 6; protein-binding; 1.9A {Homo sapiens} Length = 109 Back     alignment and structure
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472 Back     alignment and structure
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472 Back     alignment and structure
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472 Back     alignment and structure
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330 Back     alignment and structure
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121 Back     alignment and structure
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121 Back     alignment and structure
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474 Back     alignment and structure
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365 Back     alignment and structure
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Length = 411 Back     alignment and structure
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Length = 411 Back     alignment and structure
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Length = 411 Back     alignment and structure
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Length = 411 Back     alignment and structure
>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723 Back     alignment and structure
>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723 Back     alignment and structure
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} Length = 164 Back     alignment and structure
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} Length = 164 Back     alignment and structure
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} Length = 164 Back     alignment and structure
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} Length = 383 Back     alignment and structure
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225 Back     alignment and structure
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} Length = 117 Back     alignment and structure
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Length = 406 Back     alignment and structure
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Length = 406 Back     alignment and structure
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Length = 406 Back     alignment and structure
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Length = 406 Back     alignment and structure
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Length = 406 Back     alignment and structure
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} Length = 378 Back     alignment and structure
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} Length = 378 Back     alignment and structure
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} Length = 203 Back     alignment and structure
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} Length = 203 Back     alignment and structure
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} Length = 203 Back     alignment and structure
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217 Back     alignment and structure
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217 Back     alignment and structure
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217 Back     alignment and structure
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A Length = 100 Back     alignment and structure
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} Length = 338 Back     alignment and structure
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} Length = 338 Back     alignment and structure
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} Length = 338 Back     alignment and structure
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} Length = 338 Back     alignment and structure
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275 Back     alignment and structure
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275 Back     alignment and structure
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368 Back     alignment and structure
>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047 Back     alignment and structure
>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047 Back     alignment and structure
>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047 Back     alignment and structure
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A Length = 91 Back     alignment and structure
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186 Back     alignment and structure
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Length = 136 Back     alignment and structure
>1r29_A B-cell lymphoma 6 protein; BTB domain, transcriptional repression, transcription; 1.30A {Homo sapiens} SCOP: d.42.1.1 PDB: 1r28_A 1r2b_A 3bim_A 3lbz_A* 3e4u_A Length = 127 Back     alignment and structure
>2if5_A Zinc finger and BTB domain-containing protein 7A; POZ domain, POK, proto oncogene, transcription F transcription; 2.00A {Homo sapiens} PDB: 2nn2_A Length = 120 Back     alignment and structure
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A Length = 125 Back     alignment and structure
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258 Back     alignment and structure
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} Length = 115 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query836
1w3b_A388 UDP-N-acetylglucosamine--peptide N-acetylglucosami 100.0
1w3b_A388 UDP-N-acetylglucosamine--peptide N-acetylglucosami 100.0
2xpi_A597 Anaphase-promoting complex subunit CUT9; cell cycl 100.0
2gw1_A514 Mitochondrial precursor proteins import receptor; 100.0
3fp2_A537 TPR repeat-containing protein YHR117W; TOM71, mito 100.0
4g1t_A472 Interferon-induced protein with tetratricopeptide 100.0
3ieg_A359 DNAJ homolog subfamily C member 3; TPR motif, chap 100.0
2y4t_A450 DNAJ homolog subfamily C member 3; chaperone, endo 100.0
2xpi_A597 Anaphase-promoting complex subunit CUT9; cell cycl 100.0
2y4t_A450 DNAJ homolog subfamily C member 3; chaperone, endo 100.0
2gw1_A514 Mitochondrial precursor proteins import receptor; 100.0
3fp2_A537 TPR repeat-containing protein YHR117W; TOM71, mito 100.0
4g1t_A472 Interferon-induced protein with tetratricopeptide 100.0
2h6f_A382 Protein farnesyltransferase/geranylgeranyltransfer 99.97
3hym_B330 Cell division cycle protein 16 homolog; APC, anaph 99.97
3ieg_A359 DNAJ homolog subfamily C member 3; TPR motif, chap 99.97
1fch_A368 Peroxisomal targeting signal 1 receptor; protein-p 99.97
3hym_B330 Cell division cycle protein 16 homolog; APC, anaph 99.97
1fch_A368 Peroxisomal targeting signal 1 receptor; protein-p 99.96
2h6f_A382 Protein farnesyltransferase/geranylgeranyltransfer 99.96
2xm6_A490 Protein corresponding to locus C5321 from CFT073 s 99.95
4eqf_A365 PEX5-related protein; accessory protein, tetratric 99.95
4eqf_A365 PEX5-related protein; accessory protein, tetratric 99.95
2pl2_A217 Hypothetical conserved protein TTC0263; TPR, prote 99.94
3cv0_A327 Peroxisome targeting signal 1 receptor PEX5; TPR m 99.94
3u4t_A272 TPR repeat-containing protein; structural genomics 99.94
3cv0_A327 Peroxisome targeting signal 1 receptor PEX5; TPR m 99.94
2xm6_A490 Protein corresponding to locus C5321 from CFT073 s 99.94
2pl2_A217 Hypothetical conserved protein TTC0263; TPR, prote 99.94
3u4t_A272 TPR repeat-containing protein; structural genomics 99.93
3uq3_A258 Heat shock protein STI1; HSP90, peptide binding, c 99.93
3uq3_A258 Heat shock protein STI1; HSP90, peptide binding, c 99.93
3sf4_A406 G-protein-signaling modulator 2; tetratricopeptide 99.92
4a1s_A411 PINS, partner of inscuteable; cell cycle, LGN, mit 99.92
3vtx_A184 MAMA; tetratricopeptide repeats (TPR) containing p 99.92
2ooe_A530 Cleavage stimulation factor 77 kDa subunit; HAT do 99.92
3sf4_A406 G-protein-signaling modulator 2; tetratricopeptide 99.92
3mkr_A291 Coatomer subunit epsilon; tetratricopeptide repeat 99.91
3hve_A256 Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, dis 99.91
1xnf_A275 Lipoprotein NLPI; TPR, tetratricopeptide, structur 99.91
3i3n_A279 Kelch-like protein 11; structural genomics, BTB, K 99.91
1ouv_A273 Conserved hypothetical secreted protein; TPR repea 99.9
1ouv_A273 Conserved hypothetical secreted protein; TPR repea 99.9
3e4b_A452 ALGK; tetratricopeptide repeat, superhelix, algina 99.9
4i17_A228 Hypothetical protein; TPR repeats protein, structu 99.9
1xnf_A275 Lipoprotein NLPI; TPR, tetratricopeptide, structur 99.9
4a1s_A411 PINS, partner of inscuteable; cell cycle, LGN, mit 99.9
3ro2_A338 PINS homolog, G-protein-signaling modulator 2; TPR 99.9
2q7f_A243 YRRB protein; TPR, protein binding; 2.49A {Bacillu 99.9
4gyw_A 723 UDP-N-acetylglucosamine--peptide N- acetylglucosam 99.9
3mkr_A291 Coatomer subunit epsilon; tetratricopeptide repeat 99.9
4abn_A474 Tetratricopeptide repeat protein 5; P53 cofactor, 99.89
3vtx_A184 MAMA; tetratricopeptide repeats (TPR) containing p 99.89
2ond_A308 Cleavage stimulation factor 77 kDa subunit; HAT do 99.89
2ho1_A252 Type 4 fimbrial biogenesis protein PILF; type IV p 99.89
3ro2_A338 PINS homolog, G-protein-signaling modulator 2; TPR 99.89
2ooe_A530 Cleavage stimulation factor 77 kDa subunit; HAT do 99.89
4abn_A474 Tetratricopeptide repeat protein 5; P53 cofactor, 99.89
3dra_A306 Protein farnesyltransferase/geranylgeranyltransfer 99.88
2vq2_A225 PILW, putative fimbrial biogenesis and twitching m 99.88
3htm_A172 Speckle-type POZ protein; BTB, SPOP, ubiquitin, li 99.88
2q7f_A243 YRRB protein; TPR, protein binding; 2.49A {Bacillu 99.88
4i17_A228 Hypothetical protein; TPR repeats protein, structu 99.88
4gyw_A 723 UDP-N-acetylglucosamine--peptide N- acetylglucosam 99.88
3e4b_A452 ALGK; tetratricopeptide repeat, superhelix, algina 99.87
2ond_A308 Cleavage stimulation factor 77 kDa subunit; HAT do 99.86
1qqe_A292 Vesicular transport protein SEC17; helix-turn-heli 99.86
2ho1_A252 Type 4 fimbrial biogenesis protein PILF; type IV p 99.85
2vq2_A225 PILW, putative fimbrial biogenesis and twitching m 99.85
3qky_A261 Outer membrane assembly lipoprotein YFIO; membrane 99.85
2pzi_A681 Probable serine/threonine-protein kinase PKNG; ATP 99.85
3hqi_A312 Speckle-type POZ protein; SPOP, ubiquitin, puckere 99.85
3dra_A306 Protein farnesyltransferase/geranylgeranyltransfer 99.85
3dss_A331 Geranylgeranyl transferase type-2 subunit alpha; p 99.84
3urz_A208 Uncharacterized protein; tetratricopeptide repeats 99.84
1qqe_A292 Vesicular transport protein SEC17; helix-turn-heli 99.83
3ulq_A383 Response regulator aspartate phosphatase F; tetrat 99.83
2vkp_A109 BTB/POZ domain-containing protein 6; protein-bindi 99.83
3nf1_A311 KLC 1, kinesin light chain 1; TPR, structural geno 99.83
2pzi_A681 Probable serine/threonine-protein kinase PKNG; ATP 99.83
3urz_A208 Uncharacterized protein; tetratricopeptide repeats 99.83
4eoz_A145 Speckle-type POZ protein; E3 ubiquitin ligase, nuc 99.83
2if5_A120 Zinc finger and BTB domain-containing protein 7A; 99.83
3ulq_A383 Response regulator aspartate phosphatase F; tetrat 99.82
3nf1_A311 KLC 1, kinesin light chain 1; TPR, structural geno 99.82
1hz4_A373 MALT regulatory protein; two-helix bundles, helix 99.82
3dss_A331 Geranylgeranyl transferase type-2 subunit alpha; p 99.81
1r29_A127 B-cell lymphoma 6 protein; BTB domain, transcripti 99.81
3qky_A261 Outer membrane assembly lipoprotein YFIO; membrane 99.8
2ppi_A144 Gigaxonin; BTB domain, protein degradation, struct 99.8
1xi4_A 1630 Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle 99.79
3b84_A119 Zinc finger and BTB domain-containing protein 48; 99.79
3edt_B283 KLC 2, kinesin light chain 2; superhelical, struct 99.79
2z8h_A138 Transcription regulator protein BACH1; BTB, POZ, d 99.79
1buo_A121 POZ domain, protein (promyelocytic leukemia zinc f 99.78
4ga2_A150 E3 SUMO-protein ligase ranbp2; TPR motif, nuclear 99.78
3q15_A378 PSP28, response regulator aspartate phosphatase H; 99.78
2vpk_A116 Myoneurin; transcription regulation, transcription 99.78
3q7a_A349 Farnesyltransferase alpha subunit; protein prenylt 99.78
1xi4_A 1630 Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle 99.78
4ga2_A150 E3 SUMO-protein ligase ranbp2; TPR motif, nuclear 99.77
1hz4_A373 MALT regulatory protein; two-helix bundles, helix 99.77
2yy9_A135 Zinc finger and BTB domain-containing protein 48; 99.77
4gco_A126 Protein STI-1; structural genomics, PSI-biology, m 99.77
3as5_A186 MAMA; tetratricopeptide repeats (TPR) containing p 99.77
1dce_A 567 Protein (RAB geranylgeranyltransferase alpha subun 99.77
2ihc_A124 Transcription regulator protein BACH1; BRIC-A-BRAC 99.76
3q15_A378 PSP28, response regulator aspartate phosphatase H; 99.76
2yhc_A225 BAMD, UPF0169 lipoprotein YFIO; essential BAM comp 99.76
3ohu_A125 Transcription regulator protein BACH2; BTB/POZ dom 99.75
2q81_A119 MIZ-1 protein; BTB/POZ domain, transcription; HET: 99.75
2ifu_A307 Gamma-SNAP; membrane fusion, snare complex disasse 99.75
3as5_A186 MAMA; tetratricopeptide repeats (TPR) containing p 99.75
4gco_A126 Protein STI-1; structural genomics, PSI-biology, m 99.74
3q7a_A349 Farnesyltransferase alpha subunit; protein prenylt 99.74
3edt_B283 KLC 2, kinesin light chain 2; superhelical, struct 99.73
3fkc_A116 Transcriptional regulator kaiso; zinc finger and B 99.73
3ga1_A129 Nucleus accumbens-associated protein 1; BTB/POZ do 99.73
3qou_A287 Protein YBBN; thioredoxin-like fold, tetratricopep 99.73
2yhc_A225 BAMD, UPF0169 lipoprotein YFIO; essential BAM comp 99.73
3m5b_A119 Zinc finger and BTB domain-containing protein 32; 99.72
2ifu_A307 Gamma-SNAP; membrane fusion, snare complex disasse 99.72
1p5q_A336 FKBP52, FK506-binding protein 4; isomerase; 2.80A 99.72
2r5s_A176 Uncharacterized protein VP0806; APC090868.1, vibri 99.72
3gyz_A151 Chaperone protein IPGC; asymmetric homodimer, tetr 99.71
1dce_A 567 Protein (RAB geranylgeranyltransferase alpha subun 99.7
1p5q_A336 FKBP52, FK506-binding protein 4; isomerase; 2.80A 99.7
1b89_A449 Protein (clathrin heavy chain); triskelion, coated 99.7
2vsy_A 568 XCC0866; transferase, glycosyl transferase, GT-B, 99.69
2r5s_A176 Uncharacterized protein VP0806; APC090868.1, vibri 99.69
3qou_A287 Protein YBBN; thioredoxin-like fold, tetratricopep 99.68
3gyz_A151 Chaperone protein IPGC; asymmetric homodimer, tetr 99.68
4f3v_A282 ESX-1 secretion system protein ECCA1; tetratricope 99.67
2vsy_A 568 XCC0866; transferase, glycosyl transferase, GT-B, 99.66
3rjv_A212 Putative SEL1 repeat protein; alpha-alpha superhel 99.66
4f3v_A282 ESX-1 secretion system protein ECCA1; tetratricope 99.64
1b89_A449 Protein (clathrin heavy chain); triskelion, coated 99.63
1hh8_A213 P67PHOX, NCF-2, neutrophil cytosol factor 2; cell 99.62
2qfc_A293 PLCR protein; TPR, HTH, transcription regulation; 99.62
3rjv_A212 Putative SEL1 repeat protein; alpha-alpha superhel 99.62
1kt0_A457 FKBP51, 51 kDa FK506-binding protein; FKBP-like pp 99.61
1hh8_A213 P67PHOX, NCF-2, neutrophil cytosol factor 2; cell 99.61
2c2l_A281 CHIP, carboxy terminus of HSP70-interacting protei 99.61
2hr2_A159 Hypothetical protein; alpha-alpha superhelix fold, 99.61
2vgx_A148 Chaperone SYCD; alternative dimer assembly, tetrat 99.6
2vgx_A148 Chaperone SYCD; alternative dimer assembly, tetrat 99.6
2c2l_A281 CHIP, carboxy terminus of HSP70-interacting protei 99.59
1kt0_A457 FKBP51, 51 kDa FK506-binding protein; FKBP-like pp 99.59
4gcn_A127 Protein STI-1; structural genomics, PSI-biology, m 99.58
2hr2_A159 Hypothetical protein; alpha-alpha superhelix fold, 99.58
2xcb_A142 PCRH, regulatory protein PCRH; protein transport, 99.57
2fo7_A136 Synthetic consensus TPR protein; tetratricopeptide 99.57
2qfc_A293 PLCR protein; TPR, HTH, transcription regulation; 99.56
3u3w_A293 Transcriptional activator PLCR protein; ternary co 99.56
2xcb_A142 PCRH, regulatory protein PCRH; protein transport, 99.56
2fo7_A136 Synthetic consensus TPR protein; tetratricopeptide 99.55
3upv_A126 Heat shock protein STI1; TPR-fold, adaptor protein 99.55
4gcn_A127 Protein STI-1; structural genomics, PSI-biology, m 99.55
3upv_A126 Heat shock protein STI1; TPR-fold, adaptor protein 99.55
1a17_A166 Serine/threonine protein phosphatase 5; hydrolase, 99.52
1zu2_A158 Mitochondrial import receptor subunit TOM20-3; TPR 99.52
3sz7_A164 HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G 99.51
2e2e_A177 Formate-dependent nitrite reductase complex NRFG; 99.5
2fbn_A198 70 kDa peptidylprolyl isomerase, putative; sulfur 99.5
1a17_A166 Serine/threonine protein phosphatase 5; hydrolase, 99.5
3sz7_A164 HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G 99.49
2fbn_A198 70 kDa peptidylprolyl isomerase, putative; sulfur 99.48
2lni_A133 Stress-induced-phosphoprotein 1; structural genomi 99.48
2vyi_A131 SGTA protein; chaperone, TPR repeat, phosphoprotei 99.48
3u3w_A293 Transcriptional activator PLCR protein; ternary co 99.47
2lni_A133 Stress-induced-phosphoprotein 1; structural genomi 99.47
3gw4_A203 Uncharacterized protein; structural genomics, PSI- 99.47
1hxi_A121 PEX5, peroxisome targeting signal 1 receptor PEX5; 99.46
3rkv_A162 Putative peptidylprolyl isomerase; structural geno 99.45
2e2e_A177 Formate-dependent nitrite reductase complex NRFG; 99.44
2vyi_A131 SGTA protein; chaperone, TPR repeat, phosphoprotei 99.44
1zu2_A158 Mitochondrial import receptor subunit TOM20-3; TPR 99.44
3q49_B137 STIP1 homology and U box-containing protein 1; E3 99.44
3q49_B137 STIP1 homology and U box-containing protein 1; E3 99.43
1hxi_A121 PEX5, peroxisome targeting signal 1 receptor PEX5; 99.42
1wao_1 477 Serine/threonine protein phosphatase 5; hydrolase, 99.42
2if4_A338 ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, 99.41
3rkv_A162 Putative peptidylprolyl isomerase; structural geno 99.41
1wao_1 477 Serine/threonine protein phosphatase 5; hydrolase, 99.41
1na0_A125 Designed protein CTPR3; de novo protein; HET: IPT; 99.4
1na0_A125 Designed protein CTPR3; de novo protein; HET: IPT; 99.4
2if4_A338 ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, 99.38
2dba_A148 Smooth muscle cell associated protein-1, isoform 2 99.38
2kck_A112 TPR repeat; tetratricopeptide repeat, structural g 99.38
1elw_A118 TPR1-domain of HOP; HOP, TPR-domain, peptide-compl 99.37
4b4t_Q434 26S proteasome regulatory subunit RPN6; hydrolase, 99.37
3ro3_A164 PINS homolog, G-protein-signaling modulator 2; asy 99.35
3gw4_A203 Uncharacterized protein; structural genomics, PSI- 99.34
2dba_A148 Smooth muscle cell associated protein-1, isoform 2 99.34
1elw_A118 TPR1-domain of HOP; HOP, TPR-domain, peptide-compl 99.33
3ro3_A164 PINS homolog, G-protein-signaling modulator 2; asy 99.32
1ihg_A370 Cyclophilin 40; ppiase immunophilin tetratricopept 99.31
4e6h_A679 MRNA 3'-END-processing protein RNA14; HAT domain, 99.31
2xev_A129 YBGF; tetratricopeptide, alpha-helical, metal bind 99.3
2kck_A112 TPR repeat; tetratricopeptide repeat, structural g 99.3
1elr_A131 TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp 99.3
1ihg_A370 Cyclophilin 40; ppiase immunophilin tetratricopept 99.3
2xev_A129 YBGF; tetratricopeptide, alpha-helical, metal bind 99.27
1elr_A131 TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp 99.27
3mv2_B310 Coatomer subunit epsilon; vesicular membrane coat 99.25
2ast_A159 S-phase kinase-associated protein 1A; SCF-substrat 99.25
3mv2_B310 Coatomer subunit epsilon; vesicular membrane coat 99.24
3k9i_A117 BH0479 protein; putative protein binding protein, 99.23
4b4t_Q 434 26S proteasome regulatory subunit RPN6; hydrolase, 99.21
3k9i_A117 BH0479 protein; putative protein binding protein, 99.17
2kat_A115 Uncharacterized protein; NESG, structure, structur 99.13
2l6j_A111 TPR repeat-containing protein associated with HSP; 99.12
4ajy_C97 Transcription elongation factor B polypeptide 1; E 99.1
2l6j_A111 TPR repeat-containing protein associated with HSP; 99.06
4e6h_A 679 MRNA 3'-END-processing protein RNA14; HAT domain, 99.04
3ly7_A372 Transcriptional activator CADC; alpha/beta domain, 99.02
2kat_A115 Uncharacterized protein; NESG, structure, structur 99.02
1na3_A91 Designed protein CTPR2; de novo protein; HET: IPT; 99.02
3ma5_A100 Tetratricopeptide repeat domain protein; NESG, str 98.97
3ma5_A100 Tetratricopeptide repeat domain protein; NESG, str 98.93
3n71_A490 Histone lysine methyltransferase SMYD1; heart deve 98.91
2kc7_A99 BFR218_protein; tetratricopeptide repeat, all-alph 98.88
2kc7_A99 BFR218_protein; tetratricopeptide repeat, all-alph 98.87
1na3_A91 Designed protein CTPR2; de novo protein; HET: IPT; 98.87
1klx_A138 Cysteine rich protein B; structural genomics, heli 98.87
3ly7_A372 Transcriptional activator CADC; alpha/beta domain, 98.77
3n71_A490 Histone lysine methyltransferase SMYD1; heart deve 98.75
1klx_A138 Cysteine rich protein B; structural genomics, heli 98.71
1fs1_B141 SKP1, cyclin A/CDK2-associated P45; F-BOX, LRR, le 98.65
2uy1_A493 Cleavage stimulation factor 77; RNA-binding protei 98.6
3qww_A433 SET and MYND domain-containing protein 2; methyltr 98.52
3u64_A301 Protein TP_0956; tetratrico peptide repeat, protei 98.49
2p1m_A160 SKP1-like protein 1A; F-BOX, leucine rich repeat, 98.46
3qww_A433 SET and MYND domain-containing protein 2; methyltr 98.46
3bee_A93 Putative YFRE protein; putaive YFRE protein, struc 98.44
3qwp_A429 SET and MYND domain-containing protein 3; SMYD3,SE 98.41
3qwp_A429 SET and MYND domain-containing protein 3; SMYD3,SE 98.4
2uy1_A493 Cleavage stimulation factor 77; RNA-binding protei 98.38
3u64_A301 Protein TP_0956; tetratrico peptide repeat, protei 98.35
3bee_A93 Putative YFRE protein; putaive YFRE protein, struc 98.34
1pc2_A152 Mitochondria fission protein; unknown function; NM 98.22
1hv2_A99 Elongin C, ELC1; protein-peptide complex, signalin 98.18
1pc2_A152 Mitochondria fission protein; unknown function; NM 98.1
2fnj_C96 Transcription elongation factor B polypeptide 1; b 98.06
2v5f_A104 Prolyl 4-hydroxylase subunit alpha-1; endoplasmic 97.96
2v5f_A104 Prolyl 4-hydroxylase subunit alpha-1; endoplasmic 97.96
3v7d_A169 Suppressor of kinetochore protein 1; WD 40 domain, 97.73
3drz_A107 BTB/POZ domain-containing protein KCTD5; potassium 97.68
1vcb_B112 Protein (elongin C); tumor suppressor, cancer, ubi 97.46
1nzn_A126 CGI-135 protein, fission protein FIS1P; TPR, unkno 97.24
4g26_A 501 Pentatricopeptide repeat-containing protein AT2G3 96.99
1nzn_A126 CGI-135 protein, fission protein FIS1P; TPR, unkno 96.83
4g26_A501 Pentatricopeptide repeat-containing protein AT2G3 96.55
3ffl_A167 Anaphase-promoting complex subunit 7; tetratricope 96.26
3drx_A202 BTB/POZ domain-containing protein KCTD5; golgi, gr 95.87
1y8m_A144 FIS1; mitochondria, unknown function; NMR {Sacchar 95.31
3o48_A134 Mitochondria fission 1 protein; tetratricopeptide 94.94
3ffl_A167 Anaphase-promoting complex subunit 7; tetratricope 94.9
4h7y_A161 Dual specificity protein kinase TTK; mitotic check 94.88
1y8m_A144 FIS1; mitochondria, unknown function; NMR {Sacchar 94.74
4gns_B 754 Protein CSD3, chitin biosynthesis protein CHS6; FN 94.43
4h7y_A161 Dual specificity protein kinase TTK; mitotic check 94.3
3o48_A134 Mitochondria fission 1 protein; tetratricopeptide 94.05
3txn_A394 26S proteasome regulatory complex subunit P42B; PC 93.96
3kvt_A115 Potassium channel protein SHAW; tetramerization do 92.96
3kae_A242 CDC27, possible protein of nuclear scaffold; tetra 92.91
1zbp_A273 Hypothetical protein VPA1032; alpha-beta protein, 92.65
3mkq_A814 Coatomer beta'-subunit; beta-propeller, alpha-sole 92.54
2ff4_A388 Probable regulatory protein EMBR; winged-helix, te 91.94
3mkq_A814 Coatomer beta'-subunit; beta-propeller, alpha-sole 91.84
2ff4_A388 Probable regulatory protein EMBR; winged-helix, te 91.44
1s1g_A124 Potassium voltage-gated channel subfamily D membe; 91.11
2nz0_B140 Potassium voltage-gated channel subfamily D membe; 90.84
1zbp_A273 Hypothetical protein VPA1032; alpha-beta protein, 90.76
1t1d_A100 Protein (potassium channel KV1.1); potassium chann 90.63
3txn_A394 26S proteasome regulatory complex subunit P42B; PC 89.62
1ya0_A 497 SMG-7 transcript variant 2; alpha-helical repeat, 89.58
1nn7_A105 Potassium channel KV4.2; teteramerization domain, 88.94
2eqx_A105 Kelch repeat and BTB domain-containing protein 4; 87.05
4gns_B754 Protein CSD3, chitin biosynthesis protein CHS6; FN 86.8
1ya0_A497 SMG-7 transcript variant 2; alpha-helical repeat, 85.06
4fhn_B1139 Nucleoporin NUP120; protein complex,structural pro 84.34
3mkq_B177 Coatomer subunit alpha; beta-propeller, alpha-sole 84.2
3kae_A242 CDC27, possible protein of nuclear scaffold; tetra 83.99
4b4t_S 523 RPN3, 26S proteasome regulatory subunit RPN3; hydr 83.04
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Back     alignment and structure
Probab=100.00  E-value=1.3e-40  Score=370.04  Aligned_cols=371  Identities=14%  Similarity=0.089  Sum_probs=335.7

Q ss_pred             HHHHHHhhccchHHHHHHHHHHHhccch--hhHhhHHHHHHhcCCHHHHHHHHHHhHhccCCchHHHHHhhhc----CCh
Q 003249          388 QLGCVRLLRKEYDEAEHLFEAAVNAGHI--YSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLY----CEG  461 (836)
Q Consensus       388 ~lG~~~~~~g~y~eAi~~f~~Al~l~~~--~a~~~la~~~~~~G~~~~A~~~~~~ai~~~~~~~~ay~~r~~~----~~~  461 (836)
                      .+|..++..|++++|+..|+++++.+|.  .++..+|.++...|++++|...+..++..+|..+.+|..+|..    +..
T Consensus         4 ~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~   83 (388)
T 1w3b_A            4 ELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQL   83 (388)
T ss_dssp             THHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCH
T ss_pred             hHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCH
Confidence            3577889999999999999999988665  4778899999999999999999999999999988888887642    666


Q ss_pred             hhHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-hHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 003249          462 DKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAILT  540 (836)
Q Consensus       462 ~eAi~d~~kAi~ldP~~~~ay~~rg~~l~~~g~~~eAi~~~~kai~l~P~-~~~~~~rg~~~~~lg~~~~Ai~d~~~al~  540 (836)
                      ++|+..|+++++++|+++.+|.++|.++...|++++|+..|.++++++|+ ...+..+|.++..+|++++|+..|+++++
T Consensus        84 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~  163 (388)
T 1w3b_A           84 QEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIE  163 (388)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999997 57788899999999999999999999999


Q ss_pred             hCCCchhhhhhHHHHHHHHHHHHHhhhHhHHHHHHhhhhccCcccccchHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCH
Q 003249          541 LSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCP  620 (836)
Q Consensus       541 l~P~~~~~~~~~~~~~~~~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~aL~~~~~al~~~P~~~~~~~~~gl~l~~l~~~  620 (836)
                      ++|++...+..++      .++...++++.|                  +..+.++++++|+...+|+++|.++...|++
T Consensus       164 ~~p~~~~~~~~l~------~~~~~~g~~~~A------------------~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~  219 (388)
T 1w3b_A          164 TQPNFAVAWSNLG------CVFNAQGEIWLA------------------IHHFEKAVTLDPNFLDAYINLGNVLKEARIF  219 (388)
T ss_dssp             HCTTCHHHHHHHH------HHHHTTTCHHHH------------------HHHHHHHHHHCTTCHHHHHHHHHHHHTTTCT
T ss_pred             hCCCCHHHHHHHH------HHHHHcCCHHHH------------------HHHHHHHHhcCCCcHHHHHHHHHHHHHcCCH
Confidence            9999977665543      233344444444                  7788999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccchHHHHHHHHHhhccccCCCChhHHHHHHHH
Q 003249          621 EAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYALADSSQDSSCSSTVVSLLED  700 (836)
Q Consensus       621 ~eAl~~~~~Al~l~P~~~eal~~~G~il~~~G~~eeAl~~~~~Ai~l~p~~~a~~~~a~aL~~~~l~~~~~~~~i~~l~~  700 (836)
                      ++|+..|+++++++|+++.++.++|.++..+|++++|++.|+++++++|++                             
T Consensus       220 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~-----------------------------  270 (388)
T 1w3b_A          220 DRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHF-----------------------------  270 (388)
T ss_dssp             THHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSC-----------------------------
T ss_pred             HHHHHHHHHHHhhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC-----------------------------
Confidence            999999999999999999999999999999999999999999999987765                             


Q ss_pred             HhcCCccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCch--hHHhhHHHHHHhcCCHHHHHHHHHHHHHhcCCCH
Q 003249          701 ALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRHT--RAHQGLARVHFLKNNKTTAYEEMTKLIKKARNNA  778 (836)
Q Consensus       701 Al~~~~~~~~~~~a~~nlG~~y~~~g~~deAi~~y~kAL~l~~~--~A~~~la~~~~~~g~~~~A~~~~~kaie~~p~~a  778 (836)
                                 +.+|+++|.+|...|++++|++.|++++++.|.  .++.++|.++...|++++|+..|+++++++|+++
T Consensus       271 -----------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~  339 (388)
T 1w3b_A          271 -----------PDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFA  339 (388)
T ss_dssp             -----------HHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCH
T ss_pred             -----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcH
Confidence                       467999999999999999999999999998764  6889999999999999999999999999999999


Q ss_pred             HHHHHHHH----ccCHHHHHHHHHHhHhcCCCCcccchhhHHHHHHHh
Q 003249          779 SAYEKRSE----YCDRELTRADLEMVTQLDPLRVYPYRYRAAGLIVFL  822 (836)
Q Consensus       779 ~Ay~~r~~----~~~~~~A~~D~~~Ai~l~P~~~~~y~~r~~~~~~~~  822 (836)
                      .+|.+++.    .|++++|+..|++|++++|+.+.+|.++|.++..++
T Consensus       340 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~a~~~lg~~~~~~~  387 (388)
T 1w3b_A          340 AAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQ  387 (388)
T ss_dssp             HHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHhHHHHHHHcc
Confidence            99999853    589999999999999999999999999999988765
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Back     alignment and structure
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Back     alignment and structure
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Back     alignment and structure
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Back     alignment and structure
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Back     alignment and structure
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Back     alignment and structure
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Back     alignment and structure
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Back     alignment and structure
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Back     alignment and structure
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Back     alignment and structure
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Back     alignment and structure
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Back     alignment and structure
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... Back     alignment and structure
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Back     alignment and structure
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Back     alignment and structure
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Back     alignment and structure
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Back     alignment and structure
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Back     alignment and structure
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... Back     alignment and structure
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} Back     alignment and structure
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Back     alignment and structure
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Back     alignment and structure
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Back     alignment and structure
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Back     alignment and structure
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Back     alignment and structure
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Back     alignment and structure
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} Back     alignment and structure
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Back     alignment and structure
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Back     alignment and structure
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Back     alignment and structure
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Back     alignment and structure
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Back     alignment and structure
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Back     alignment and structure
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A Back     alignment and structure
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 Back     alignment and structure
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Back     alignment and structure
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Back     alignment and structure
>3hve_A Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, disease mutation, kelch repeat, neurodegeneration, phosphoprotein, polymorphism, UBL conjugation; 2.80A {Homo sapiens} PDB: 3hve_B Back     alignment and structure
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Back     alignment and structure
>3i3n_A Kelch-like protein 11; structural genomics, BTB, KLHL11A, SGC, structural genomics consortium, kelch repeat, secreted, protein binding; 2.60A {Homo sapiens} PDB: 4ap2_A* 4apf_A Back     alignment and structure
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 Back     alignment and structure
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 Back     alignment and structure
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} Back     alignment and structure
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} Back     alignment and structure
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Back     alignment and structure
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Back     alignment and structure
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} Back     alignment and structure
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Back     alignment and structure
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* Back     alignment and structure
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Back     alignment and structure
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Back     alignment and structure
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A Back     alignment and structure
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 Back     alignment and structure
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Back     alignment and structure
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} Back     alignment and structure
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 Back     alignment and structure
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Back     alignment and structure
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} Back     alignment and structure
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Back     alignment and structure
>3htm_A Speckle-type POZ protein; BTB, SPOP, ubiquitin, ligase, nucleus, UBL conjugation pathway, protein binding; 2.50A {Homo sapiens} Back     alignment and structure
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Back     alignment and structure
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} Back     alignment and structure
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* Back     alignment and structure
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} Back     alignment and structure
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 Back     alignment and structure
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 Back     alignment and structure
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Back     alignment and structure
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Back     alignment and structure
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} Back     alignment and structure
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} Back     alignment and structure
>3hqi_A Speckle-type POZ protein; SPOP, ubiquitin, puckered, nucleus, UBL conjugation pathway, protein binding, ligase; 2.62A {Homo sapiens} PDB: 3hu6_A Back     alignment and structure
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} Back     alignment and structure
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* Back     alignment and structure
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Back     alignment and structure
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 Back     alignment and structure
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} Back     alignment and structure
>2vkp_A BTB/POZ domain-containing protein 6; protein-binding; 1.9A {Homo sapiens} Back     alignment and structure
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} Back     alignment and structure
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} Back     alignment and structure
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Back     alignment and structure
>4eoz_A Speckle-type POZ protein; E3 ubiquitin ligase, nucleus, protein binding; 2.40A {Homo sapiens} Back     alignment and structure
>2if5_A Zinc finger and BTB domain-containing protein 7A; POZ domain, POK, proto oncogene, transcription F transcription; 2.00A {Homo sapiens} PDB: 2nn2_A Back     alignment and structure
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} Back     alignment and structure
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} Back     alignment and structure
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 Back     alignment and structure
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* Back     alignment and structure
>1r29_A B-cell lymphoma 6 protein; BTB domain, transcriptional repression, transcription; 1.30A {Homo sapiens} SCOP: d.42.1.1 PDB: 1r28_A 1r2b_A 3bim_A 3lbz_A* 3e4u_A Back     alignment and structure
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} Back     alignment and structure
>2ppi_A Gigaxonin; BTB domain, protein degradation, structural genomics, struct genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} Back     alignment and structure
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A Back     alignment and structure
>3b84_A Zinc finger and BTB domain-containing protein 48; krueppel related zinc finger protein 3, HKR3, ZBTB48, Z finger, oncogene; 1.74A {Homo sapiens} Back     alignment and structure
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A Back     alignment and structure
>2z8h_A Transcription regulator protein BACH1; BTB, POZ, disulfide bond, activator, DNA-binding, nucleus, phosphorylation, repressor; 2.50A {Mus musculus} Back     alignment and structure
>1buo_A POZ domain, protein (promyelocytic leukemia zinc finger prote; protein-protein interaction domain, transcriptional represso finger protein; 1.90A {Homo sapiens} SCOP: d.42.1.1 PDB: 1cs3_A Back     alignment and structure
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* Back     alignment and structure
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} Back     alignment and structure
>2vpk_A Myoneurin; transcription regulation, transcription, metal-binding, alternative splicing, zinc, nucleus, BTB domain, zinc-finger, DNA-binding; 2.00A {Homo sapiens} Back     alignment and structure
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* Back     alignment and structure
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A Back     alignment and structure
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* Back     alignment and structure
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 Back     alignment and structure
>2yy9_A Zinc finger and BTB domain-containing protein 48; mouse, HKR3, structural genomics, NPPSFA; 2.60A {Mus musculus} Back     alignment and structure
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} Back     alignment and structure
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Back     alignment and structure
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Back     alignment and structure
>2ihc_A Transcription regulator protein BACH1; BRIC-A-BRAC domain,transcription factor, protein-PROT interaction; 2.44A {Homo sapiens} Back     alignment and structure
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} Back     alignment and structure
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A Back     alignment and structure
>3ohu_A Transcription regulator protein BACH2; BTB/POZ domain; 2.10A {Homo sapiens} SCOP: d.42.1.0 PDB: 3ohv_A Back     alignment and structure
>2q81_A MIZ-1 protein; BTB/POZ domain, transcription; HET: PG4; 2.10A {Homo sapiens} PDB: 3m52_A Back     alignment and structure
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} Back     alignment and structure
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Back     alignment and structure
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} Back     alignment and structure
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* Back     alignment and structure
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A Back     alignment and structure
>3fkc_A Transcriptional regulator kaiso; zinc finger and BTB domain containing 33, kaiso transcriptio ZNF-kaiso, ZNF348,wugsc:H_DJ525N14.1; 1.70A {Homo sapiens} PDB: 3m4t_A 3m8v_A Back     alignment and structure
>3ga1_A Nucleus accumbens-associated protein 1; BTB/POZ domain, phosphoprotein, repressor, transcri transcription regulation; 2.10A {Homo sapiens} Back     alignment and structure
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* Back     alignment and structure
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A Back     alignment and structure
>3m5b_A Zinc finger and BTB domain-containing protein 32; POZ domain, BTB/POZ domain, ZBTB32, zinc finger domain-containing protein 32; 2.00A {Homo sapiens} SCOP: d.42.1.0 Back     alignment and structure
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} Back     alignment and structure
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A Back     alignment and structure
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} Back     alignment and structure
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Back     alignment and structure
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Back     alignment and structure
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A Back     alignment and structure
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 Back     alignment and structure
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Back     alignment and structure
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} Back     alignment and structure
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* Back     alignment and structure
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Back     alignment and structure
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} Back     alignment and structure
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Back     alignment and structure
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} Back     alignment and structure
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} Back     alignment and structure
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 Back     alignment and structure
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* Back     alignment and structure
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} Back     alignment and structure
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} Back     alignment and structure
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A Back     alignment and structure
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* Back     alignment and structure
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 Back     alignment and structure
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 Back     alignment and structure
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Back     alignment and structure
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Back     alignment and structure
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 Back     alignment and structure
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A Back     alignment and structure
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} Back     alignment and structure
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 Back     alignment and structure
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Back     alignment and structure
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Back     alignment and structure
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} Back     alignment and structure
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A Back     alignment and structure
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Back     alignment and structure
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Back     alignment and structure
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} Back     alignment and structure
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} Back     alignment and structure
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} Back     alignment and structure
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A Back     alignment and structure
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 Back     alignment and structure
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} Back     alignment and structure
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} Back     alignment and structure
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 Back     alignment and structure
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A Back     alignment and structure
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} Back     alignment and structure
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 Back     alignment and structure
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} Back     alignment and structure
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 Back     alignment and structure
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A Back     alignment and structure
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} Back     alignment and structure
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} Back     alignment and structure
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Back     alignment and structure
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} Back     alignment and structure
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} Back     alignment and structure
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 Back     alignment and structure
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 Back     alignment and structure
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* Back     alignment and structure
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* Back     alignment and structure
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Back     alignment and structure
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 Back     alignment and structure
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} Back     alignment and structure
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} Back     alignment and structure
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 Back     alignment and structure
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A Back     alignment and structure
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A Back     alignment and structure
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} Back     alignment and structure
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Back     alignment and structure
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 Back     alignment and structure
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} Back     alignment and structure
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} Back     alignment and structure
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} Back     alignment and structure
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 Back     alignment and structure
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} Back     alignment and structure
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A Back     alignment and structure
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A Back     alignment and structure
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} Back     alignment and structure
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Back     alignment and structure
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A Back     alignment and structure
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A Back     alignment and structure
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} Back     alignment and structure
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A Back     alignment and structure
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B Back     alignment and structure
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B Back     alignment and structure
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} Back     alignment and structure
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} Back     alignment and structure
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} Back     alignment and structure
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} Back     alignment and structure
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} Back     alignment and structure
>4ajy_C Transcription elongation factor B polypeptide 1; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 2izv_C 3dcg_B 3zrc_B* 3zrf_B 3ztc_B* 3ztd_B* 3zun_B* 2c9w_C 4awj_B* 4b95_B* 4b9k_B* 2fnj_C 1lqb_B 1lm8_C 2jz3_C 2xai_B 4b9k_E* Back     alignment and structure
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} Back     alignment and structure
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A Back     alignment and structure
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A Back     alignment and structure
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} Back     alignment and structure
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A Back     alignment and structure
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A Back     alignment and structure
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A Back     alignment and structure
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} Back     alignment and structure
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} Back     alignment and structure
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} Back     alignment and structure
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A Back     alignment and structure
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 Back     alignment and structure
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A Back     alignment and structure
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} Back     alignment and structure
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 Back     alignment and structure
>1fs1_B SKP1, cyclin A/CDK2-associated P45; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.157.1.1 d.42.1.1 PDB: 1fs2_B 1ldk_D Back     alignment and structure
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B Back     alignment and structure
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* Back     alignment and structure
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* Back     alignment and structure
>2p1m_A SKP1-like protein 1A; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_A* 2p1o_A* 2p1p_A* 2p1q_A* 3c6n_A* 3c6o_A* 3c6p_A* 3ogk_A* 3ogl_A* 3ogm_A* Back     alignment and structure
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* Back     alignment and structure
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} Back     alignment and structure
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* Back     alignment and structure
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* Back     alignment and structure
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B Back     alignment and structure
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* Back     alignment and structure
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} Back     alignment and structure
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 Back     alignment and structure
>1hv2_A Elongin C, ELC1; protein-peptide complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: d.42.1.1 Back     alignment and structure
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 Back     alignment and structure
>2fnj_C Transcription elongation factor B polypeptide 1; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.42.1.1 PDB: 1lqb_B 1lm8_C 2jz3_C 2xai_B 2c9w_C 2izv_C 3dcg_B 3zrc_B* 3zrf_B Back     alignment and structure
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A Back     alignment and structure
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A Back     alignment and structure
>3v7d_A Suppressor of kinetochore protein 1; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_A* 3mks_A* Back     alignment and structure
>3drz_A BTB/POZ domain-containing protein KCTD5; potassium channel domain T1, pentamer, unkno function; 1.90A {Homo sapiens} Back     alignment and structure
>1vcb_B Protein (elongin C); tumor suppressor, cancer, ubiquitin, beta sandwich, transcription, transcriptional elongation; 2.70A {Homo sapiens} SCOP: d.42.1.1 Back     alignment and structure
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A Back     alignment and structure
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A Back     alignment and structure
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A Back     alignment and structure
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A Back     alignment and structure
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} Back     alignment and structure
>3drx_A BTB/POZ domain-containing protein KCTD5; golgi, grAsp55, potassium channel domain T1, pentameric assembly, HOST-virus interaction, nucleus; 3.11A {Homo sapiens} PDB: 3dry_A Back     alignment and structure
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 Back     alignment and structure
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A Back     alignment and structure
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} Back     alignment and structure
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A Back     alignment and structure
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 Back     alignment and structure
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} Back     alignment and structure
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A Back     alignment and structure
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A Back     alignment and structure
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A Back     alignment and structure
>3kvt_A Potassium channel protein SHAW; tetramerization domain, molecular recogni zinc-binding; 2.00A {Aplysia californica} SCOP: d.42.1.2 Back     alignment and structure
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi} Back     alignment and structure
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1 Back     alignment and structure
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A Back     alignment and structure
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* Back     alignment and structure
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A Back     alignment and structure
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* Back     alignment and structure
>1s1g_A Potassium voltage-gated channel subfamily D membe; K+ channels, tetramerization domain, T1 domain, transport PR; 2.60A {Homo sapiens} SCOP: d.42.1.2 Back     alignment and structure
>2nz0_B Potassium voltage-gated channel subfamily D membe; KV4.3, kchip1, membrane protein; 3.20A {Homo sapiens} PDB: 2i2r_A Back     alignment and structure
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1 Back     alignment and structure
>1t1d_A Protein (potassium channel KV1.1); potassium channels, tetramerization domain, aplysia KV1.1, proton transport, membrane protein; 1.51A {Aplysia californica} SCOP: d.42.1.2 PDB: 1eod_A 1eof_A 1eoe_A 1a68_A 1qdv_A 1exb_E* 1qdw_A 1dsx_A Back     alignment and structure
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A Back     alignment and structure
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1 Back     alignment and structure
>1nn7_A Potassium channel KV4.2; teteramerization domain, voltage gated potassium channel SHAL, membrane protein; 2.10A {Rattus norvegicus} SCOP: d.42.1.2 Back     alignment and structure
>2eqx_A Kelch repeat and BTB domain-containing protein 4; BACK domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} Back     alignment and structure
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1 Back     alignment and structure
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} Back     alignment and structure
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} Back     alignment and structure
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi} Back     alignment and structure
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 836
d1w3ba_388 a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, 4e-09
d1w3ba_388 a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, 2e-07
d1r29a_122 d.42.1.1 (A:) B-cell lymphoma 6 (Bcl6) protein BTB 4e-05
d1buoa_121 d.42.1.1 (A:) Promyelocytic leukaemia zinc finger 5e-04
d1hz4a_366 a.118.8.2 (A:) Transcription factor MalT domain II 0.003
>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 Back     information, alignment and structure

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.0 bits (136), Expect = 4e-09
 Identities = 43/400 (10%), Positives = 104/400 (26%), Gaps = 39/400 (9%)

Query: 369 LERLLESAETDRQRLLAFHQLGCVRLLRKEYDEAEHLFEAAV--NAGHIYSIAGLARL-- 424
               ++    +         L  +    +  D + H    A+  N     + + L  +  
Sbjct: 19  ERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYK 78

Query: 425 ---GYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLYCEGDKRWEDLDKATALDPTLSYP 481
                 +  + + +            +       +           +             
Sbjct: 79  ERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVR 138

Query: 482 YMYRASSLMTKQNVEAALAEINRILGFKLALECLELRFCFFLALEDYQAALCDVQAILTL 541
                      +  EA    +  I              C F A  +   A+   +  +TL
Sbjct: 139 SDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTL 198

Query: 542 SPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDA 601
            P++                 +   N        +++DR        +++   + L    
Sbjct: 199 DPNFL----------------DAYINLGNVLKEARIFDR--------AVAAYLRALSLSP 234

Query: 602 PKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKA 661
              V++   + +       + A+ + + A +      +        L +     E     
Sbjct: 235 NHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCY 294

Query: 662 EESIQMKRSFEAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSV 721
             ++++  +          LA+  ++       V L   AL+   +      A +NL SV
Sbjct: 295 NTALRLCPTHADSL---NNLANIKREQGNIEEAVRLYRKALEVFPE---FAAAHSNLASV 348

Query: 722 YVDCGQLDLAADCYSNALKIR--HTRAHQGLARVHFLKNN 759
               G+L  A   Y  A++I      A+  +        +
Sbjct: 349 LQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQD 388
>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 Back     information, alignment and structure
>d1r29a_ d.42.1.1 (A:) B-cell lymphoma 6 (Bcl6) protein BTB domain {Human (Homo sapiens) [TaxId: 9606]} Length = 122 Back     information, alignment and structure
>d1buoa_ d.42.1.1 (A:) Promyelocytic leukaemia zinc finger (PLZF) protein BTB domain {Human (Homo sapiens) [TaxId: 9606]} Length = 121 Back     information, alignment and structure
>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} Length = 366 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query836
d1w3ba_388 O-GlcNAc transferase p110 subunit, OGT {Human (Hom 100.0
d1w3ba_388 O-GlcNAc transferase p110 subunit, OGT {Human (Hom 100.0
d1fcha_323 Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 99.95
d2h6fa1315 Protein farnesyltransferase alpha-subunit {Human ( 99.94
d1fcha_323 Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 99.94
d2h6fa1315 Protein farnesyltransferase alpha-subunit {Human ( 99.93
d1dcea1334 Rab geranylgeranyltransferase alpha-subunit, N-ter 99.91
d1dcea1334 Rab geranylgeranyltransferase alpha-subunit, N-ter 99.89
d1xnfa_259 Lipoprotein NlpI {Escherichia coli [TaxId: 562]} 99.86
d1xnfa_259 Lipoprotein NlpI {Escherichia coli [TaxId: 562]} 99.86
d1hz4a_366 Transcription factor MalT domain III {Escherichia 99.81
d1r29a_122 B-cell lymphoma 6 (Bcl6) protein BTB domain {Human 99.8
d1hz4a_366 Transcription factor MalT domain III {Escherichia 99.78
d1buoa_121 Promyelocytic leukaemia zinc finger (PLZF) protein 99.78
d1ya0a1 497 SMG-7 {Human (Homo sapiens) [TaxId: 9606]} 99.73
d1hh8a_192 Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H 99.69
d1hh8a_192 Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H 99.68
d1qqea_290 Vesicular transport protein sec17 {Baker's yeast ( 99.68
d1ya0a1 497 SMG-7 {Human (Homo sapiens) [TaxId: 9606]} 99.67
d1qqea_290 Vesicular transport protein sec17 {Baker's yeast ( 99.64
d2c2la1201 STIP1 homology and U box-containing protein 1, STU 99.6
d1elwa_117 Hop {Human (Homo sapiens) [TaxId: 9606]} 99.59
d1a17a_159 Protein phosphatase 5 {Human (Homo sapiens) [TaxId 99.59
d1elwa_117 Hop {Human (Homo sapiens) [TaxId: 9606]} 99.59
d2c2la1201 STIP1 homology and U box-containing protein 1, STU 99.56
d1a17a_159 Protein phosphatase 5 {Human (Homo sapiens) [TaxId 99.55
d1ihga1169 Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} 99.47
d1elra_128 Hop {Human (Homo sapiens) [TaxId: 9606]} 99.45
d1p5qa1170 FKBP52 (FKBP4), C-terminal domain {Human (Homo sap 99.45
d1p5qa1170 FKBP52 (FKBP4), C-terminal domain {Human (Homo sap 99.45
d1ihga1169 Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} 99.43
d1hxia_112 Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 99.43
d1ouva_265 Cysteine rich protein C (HcpC) {Helicobacter pylor 99.42
d1ouva_265 Cysteine rich protein C (HcpC) {Helicobacter pylor 99.41
d2fbna1153 Putative 70 kda peptidylprolyl isomerase PFL2275c 99.41
d1kt1a1168 FKBP51, C-terminal domain {Monkey (Saimiri bolivie 99.4
d1kt1a1168 FKBP51, C-terminal domain {Monkey (Saimiri bolivie 99.4
d1elra_128 Hop {Human (Homo sapiens) [TaxId: 9606]} 99.39
d2fbna1153 Putative 70 kda peptidylprolyl isomerase PFL2275c 99.39
d1zu2a1145 Mitochondrial import receptor subunit tom20-3 {Tha 99.39
d1hxia_112 Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 99.37
d2onda1308 Cleavage stimulation factor 77 kDa subunit CSTF3 { 99.36
d1zu2a1145 Mitochondrial import receptor subunit tom20-3 {Tha 99.34
d1nzna_122 Mitochondria fission protein Fis1 {Human (Homo sap 99.3
d1nzna_122 Mitochondria fission protein Fis1 {Human (Homo sap 99.27
d2hr2a1156 Hypothetical protein CT2138 {Chlorobium tepidum [T 99.22
d2hr2a1156 Hypothetical protein CT2138 {Chlorobium tepidum [T 99.2
d2onda1308 Cleavage stimulation factor 77 kDa subunit CSTF3 { 99.19
d1tjca_95 Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human 99.06
d1tjca_95 Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human 99.0
d2ff4a2179 Probable regulatory protein EmbR, middle domain {M 98.89
d1zbpa1264 Hypothetical protein VPA1032 {Vibrio parahaemolyti 98.88
d2ff4a2179 Probable regulatory protein EmbR, middle domain {M 98.74
d1zbpa1264 Hypothetical protein VPA1032 {Vibrio parahaemolyti 98.66
d1klxa_133 Cysteine rich protein B (HcpB) {Helicobacter pylor 97.94
d1klxa_133 Cysteine rich protein B (HcpB) {Helicobacter pylor 97.66
d2pqrb1124 Mitochondria fission protein Fis1 {Baker's yeast ( 97.63
d2pqrb1124 Mitochondria fission protein Fis1 {Baker's yeast ( 97.49
d2c9wc196 Elongin C {Human (Homo sapiens) [TaxId: 9606]} 97.37
d1hv2a_99 Elongin C {Baker's yeast (Saccharomyces cerevisiae 96.56
d1nn7a_105 Potassium channel kv4.2 {Rat (Rattus norvegicus) [ 95.31
d3kvta_103 akv3.1 voltage-gated potassium channel {California 94.9
d1t1da_100 Shaker potassium channel {California sea hare (Apl 94.12
d1qsaa1450 70 KDa soluble lytic transglycosylase (SLT70), sup 93.8
d1fs1b261 Cyclin A/CDK2-associated p45, Skp1 {Human (Homo sa 85.27
d1nexa272 Centromere DNA-binding protein complex Cbf3 subuni 83.19
>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.2e-35  Score=317.88  Aligned_cols=375  Identities=12%  Similarity=0.089  Sum_probs=259.3

Q ss_pred             HHHHHHhhccchHHHHHHHHHHHhccch--hhHhhHHHHHHhcCCHHHHHHHHHHhHhccCCchHHHHHhhhcCChhhHH
Q 003249          388 QLGCVRLLRKEYDEAEHLFEAAVNAGHI--YSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLYCEGDKRW  465 (836)
Q Consensus       388 ~lG~~~~~~g~y~eAi~~f~~Al~l~~~--~a~~~la~~~~~~G~~~~A~~~~~~ai~~~~~~~~ay~~r~~~~~~~eAi  465 (836)
                      .+|..+++.|+|++|+..|+++++.+|.  .++..+|.++...|++++|+..                            
T Consensus         4 ~la~~~~~~G~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~----------------------------   55 (388)
T d1w3ba_           4 ELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHF----------------------------   55 (388)
T ss_dssp             THHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH----------------------------
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHH----------------------------
Confidence            4678888889999999999999887653  5778888888888887666665                            


Q ss_pred             HHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-hHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC
Q 003249          466 EDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAILTLSPD  544 (836)
Q Consensus       466 ~d~~kAi~ldP~~~~ay~~rg~~l~~~g~~~eAi~~~~kai~l~P~-~~~~~~rg~~~~~lg~~~~Ai~d~~~al~l~P~  544 (836)
                        |++|++++|+++.+|.++|.++..+|++++|+..+.++++.+|. .......+......+.+..+...........+.
T Consensus        56 --~~~al~~~p~~~~a~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  133 (388)
T d1w3ba_          56 --STLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPD  133 (388)
T ss_dssp             --HHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTT
T ss_pred             --HHHHHHhCCCCHHHHHHHHHHhhhhccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence              55566666666666666666666666666666666666666664 333444555555556666666666665555555


Q ss_pred             chhhhhhHHHHHHHHHHHHHhhhHhHHHHHHhhhhccCcccccchHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHH
Q 003249          545 YRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAM  624 (836)
Q Consensus       545 ~~~~~~~~~~~~~~~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~aL~~~~~al~~~P~~~~~~~~~gl~l~~l~~~~eAl  624 (836)
                      ..........      ..........                  ....+.+.+..+|+.+.++..+|..+...|++++|+
T Consensus       134 ~~~~~~~~~~------~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~  189 (388)
T d1w3ba_         134 LYCVRSDLGN------LLKALGRLEE------------------AKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAI  189 (388)
T ss_dssp             CTHHHHHHHH------HHHTTSCHHH------------------HHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHH
T ss_pred             cccccccccc------cccccchhhh------------------hHHHHHHhhccCcchhHHHHhhcccccccCcHHHHH
Confidence            5432222111      1111111111                  123344555555666666666666666666666666


Q ss_pred             HHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccch-HHHHHHHHHhhccccCCCChhHHHHHHHHHhc
Q 003249          625 RSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSF-EAFFLKAYALADSSQDSSCSSTVVSLLEDALK  703 (836)
Q Consensus       625 ~~~~~Al~l~P~~~eal~~~G~il~~~G~~eeAl~~~~~Ai~l~p~~-~a~~~~a~aL~~~~l~~~~~~~~i~~l~~Al~  703 (836)
                      ..++++++++|++++++..+|.++...|++++|+..|++++.+.|.. ..++..|..+...    +....++..+++|++
T Consensus       190 ~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~A~~~~~~al~  265 (388)
T d1w3ba_         190 HHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQ----GLIDLAIDTYRRAIE  265 (388)
T ss_dssp             HHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCcccHHHHHHHhhhhhccccHHHHHHHHHHhHHHhhhHHHHHHHHHHHHHHC----CCHHHHHHHHHHHHH
Confidence            66666666666666666666666666666666666666666665554 3334444443332    234455555666655


Q ss_pred             CCccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCch--hHHhhHHHHHHhcCCHHHHHHHHHHHHHhcCCCHHHH
Q 003249          704 CPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRHT--RAHQGLARVHFLKNNKTTAYEEMTKLIKKARNNASAY  781 (836)
Q Consensus       704 ~~~~~~~~~~a~~nlG~~y~~~g~~deAi~~y~kAL~l~~~--~A~~~la~~~~~~g~~~~A~~~~~kaie~~p~~a~Ay  781 (836)
                      ..++.   ++++.++|.+|...|++++|++.|++++...|.  .++..+|.++...|++++|++.|+++++++|+++.+|
T Consensus       266 ~~p~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~  342 (388)
T d1w3ba_         266 LQPHF---PDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAH  342 (388)
T ss_dssp             TCSSC---HHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHH
T ss_pred             hCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHhhhccCCccchhhhHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHH
Confidence            54443   578999999999999999999999999998654  6889999999999999999999999999999999999


Q ss_pred             HHHHH----ccCHHHHHHHHHHhHhcCCCCcccchhhHHHHHHHhh
Q 003249          782 EKRSE----YCDRELTRADLEMVTQLDPLRVYPYRYRAAGLIVFLN  823 (836)
Q Consensus       782 ~~r~~----~~~~~~A~~D~~~Ai~l~P~~~~~y~~r~~~~~~~~~  823 (836)
                      .+++.    .|++++|+..|++|+++||+++.+|.+.|.++..+|+
T Consensus       343 ~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~lg~~~~~~~D  388 (388)
T d1w3ba_         343 SNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQD  388 (388)
T ss_dssp             HHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence            99964    5999999999999999999999999999999987763
>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1r29a_ d.42.1.1 (A:) B-cell lymphoma 6 (Bcl6) protein BTB domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1buoa_ d.42.1.1 (A:) Promyelocytic leukaemia zinc finger (PLZF) protein BTB domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} Back     information, alignment and structure
>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} Back     information, alignment and structure
>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} Back     information, alignment and structure
>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} Back     information, alignment and structure
>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} Back     information, alignment and structure
>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} Back     information, alignment and structure
>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} Back     information, alignment and structure
>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} Back     information, alignment and structure
>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} Back     information, alignment and structure
>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} Back     information, alignment and structure
>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} Back     information, alignment and structure
>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} Back     information, alignment and structure
>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} Back     information, alignment and structure
>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} Back     information, alignment and structure
>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2c9wc1 d.42.1.1 (C:17-112) Elongin C {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1hv2a_ d.42.1.1 (A:) Elongin C {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1nn7a_ d.42.1.2 (A:) Potassium channel kv4.2 {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d3kvta_ d.42.1.2 (A:) akv3.1 voltage-gated potassium channel {California sea hare (Aplysia californica) [TaxId: 6500]} Back     information, alignment and structure
>d1t1da_ d.42.1.2 (A:) Shaker potassium channel {California sea hare (Aplysia californica) [TaxId: 6500]} Back     information, alignment and structure
>d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1fs1b2 d.42.1.1 (B:2-68) Cyclin A/CDK2-associated p45, Skp1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1nexa2 d.42.1.1 (A:4-103) Centromere DNA-binding protein complex Cbf3 subunit D, CBF3D {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure