Citrus Sinensis ID: 003269
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 835 | 2.2.26 [Sep-21-2011] | |||||||
| Q9SFU0 | 1038 | Protein transport protein | yes | no | 0.959 | 0.771 | 0.659 | 0.0 | |
| O95486 | 1093 | Protein transport protein | yes | no | 0.770 | 0.588 | 0.395 | 1e-134 | |
| A6QNT8 | 1099 | Protein transport protein | yes | no | 0.611 | 0.464 | 0.446 | 1e-133 | |
| Q3U2P1 | 1090 | Protein transport protein | yes | no | 0.622 | 0.477 | 0.440 | 1e-133 | |
| O95487 | 1268 | Protein transport protein | no | no | 0.622 | 0.410 | 0.443 | 1e-132 | |
| Q54U61 | 1013 | Protein transport protein | yes | no | 0.614 | 0.506 | 0.425 | 1e-126 | |
| Q1E6U9 | 932 | Protein transport protein | N/A | no | 0.714 | 0.640 | 0.387 | 1e-121 | |
| Q5B6W0 | 908 | Protein transport protein | yes | no | 0.611 | 0.562 | 0.418 | 1e-117 | |
| Q4P9K4 | 995 | Protein transport protein | N/A | no | 0.635 | 0.533 | 0.407 | 1e-117 | |
| Q4WLP1 | 919 | Protein transport protein | yes | no | 0.613 | 0.557 | 0.421 | 1e-116 |
| >sp|Q9SFU0|SC24A_ARATH Protein transport protein Sec24-like At3g07100 OS=Arabidopsis thaliana GN=At3g07100 PE=1 SV=2 | Back alignment and function desciption |
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Score = 1080 bits (2794), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 573/869 (65%), Positives = 647/869 (74%), Gaps = 68/869 (7%)
Query: 1 MGTENPGRSSFPARPSASPFASAPPTVTPFSSAGPVVGSEASSFRPAPPASPQTAAPFMS 60
MGTEN G +FPARP++SPFASAPP P S GP GSEA FRP P++ Q PF +
Sbjct: 1 MGTENQGYPNFPARPASSPFASAPPPGIPPQSGGPPTGSEAVGFRPFTPSASQPTRPFTA 60
Query: 61 AAAGVGSDSSGFRPSTPQ---------TRFNDPSVSSSPITYVPPTSGPFQRFPTPQFPP 111
+ RP P S S Y PP PFQRFP+P FP
Sbjct: 61 SGPPPAPPVGTMRPGQPSPFVSQIPGSRPPPPSSNSFPSPAYGPPGGAPFQRFPSPPFPT 120
Query: 112 VAQAPPVRGPPVGLPPVSHPIGQVPNPPVPLRAQPP--PVPMGSPVQRANFAPSGVNVPQ 169
P PP L G + +PP+ LR Q P PV MG P Q G N
Sbjct: 121 TQNPPQGPPPPQTL------AGHL-SPPMSLRPQQPMAPVAMGPPPQSTTSGLPGANAYP 173
Query: 170 PLSDSSFSASRPNSPPDSSYPFARPTPQQPLPGYVTTQPNAVSQGPTMPSSFPSHPRSYV 229
P +D A RP QQ +P + P P SFP +P V
Sbjct: 174 PATDYHMPA--------------RPGFQQSMPPVTPSYPGVGGSQP----SFPGYPSKQV 215
Query: 230 PPPPT------------SASSFPAHQGGYVP-PGVQSQHS-----GPPVGVIQGLAEDFS 271
PT SS+P H GG+ P + +Q + PP +QGL EDF+
Sbjct: 216 LQAPTPFQTSQGPPGPPPVSSYPPHTGGFAQRPNMAAQQNLHPNYAPPPSNVQGLTEDFN 275
Query: 272 SLSFGSIPGSIEPGIDLKSLPRPLDGDVEPSSLAETYPLNCHSRYLRLTTSAIPNSQSLV 331
SLS SIPGS+EPG+D KS PRPLDGDVEP+S AE YP+NCHSRYLRLTTSAIPNSQSL
Sbjct: 276 SLSLSSIPGSLEPGLDHKSFPRPLDGDVEPNSFAEMYPMNCHSRYLRLTTSAIPNSQSLA 335
Query: 332 SRWHLPLGAVVCPLAEPPEGNLF--------------ICRTYVNPYVTFTDAGRKWRCNI 377
SRWHLPLGAVVCPLAE PEG CRTYVNP+VTFTD+GRKWRCNI
Sbjct: 336 SRWHLPLGAVVCPLAETPEGEEVPLIDFGSTGIIRCRRCRTYVNPFVTFTDSGRKWRCNI 395
Query: 378 CALLNDVPGDYFAHLDATGRRIDIDQRPELTKGSVEFVAPTEYMVRPPMPPLYFFLIDVS 437
C++LNDVPG+YF+HLDATGRR+D+DQRPELTKGSVE +APTEYMVRPPMPP+YFFLIDVS
Sbjct: 396 CSMLNDVPGEYFSHLDATGRRMDMDQRPELTKGSVEIIAPTEYMVRPPMPPIYFFLIDVS 455
Query: 438 ISAIRSGMLEVVAQTIKSCLDELPGFPRTQIGFITFDSTIHFYNMKSSLTQPQMMVISDL 497
ISA +SGMLEVVAQTIKSCLD LPG+PRTQIGFIT+DST+HFYNMKSSL+QPQMMV+SDL
Sbjct: 456 ISATKSGMLEVVAQTIKSCLDNLPGYPRTQIGFITYDSTLHFYNMKSSLSQPQMMVVSDL 515
Query: 498 DDIFVPLPDDLLVNLSESRSVVDTLLDSLPSMFQDNMNVESAFGPALKAAFMVMSRLGGK 557
DDIFVPLPDDLLVNLSESR+VVD LDSLP MFQDN NVESAFGPAL+AAFMVM++LGGK
Sbjct: 516 DDIFVPLPDDLLVNLSESRTVVDAFLDSLPLMFQDNFNVESAFGPALRAAFMVMNQLGGK 575
Query: 558 LLIFQNSLPSLGVGCLKLRGDDLRVYGTDKEHSLRIPEDPFYKQMAADLTKFQIAVNVYA 617
LLIFQNSLPSLG G LKLRGDD RVYGTDKE++LR+ EDPFYKQMAAD TKFQI +NVYA
Sbjct: 576 LLIFQNSLPSLGAGRLKLRGDDPRVYGTDKEYALRVAEDPFYKQMAADCTKFQIGINVYA 635
Query: 618 FSDKYTDIASLGTLAKYTGGQVYYYPSFQSTTHGERLRHELSRDLTRETAWEAVMRIRCG 677
FSDKYTDIASLGTLAKYTGGQVYYYP FQS+ HG++LRHEL+RDLTRETAWEAVMRIRCG
Sbjct: 636 FSDKYTDIASLGTLAKYTGGQVYYYPGFQSSVHGDKLRHELARDLTRETAWEAVMRIRCG 695
Query: 678 KGVRFTNYHGNFMLRSTDLLALPAVDCDKAYAMQLSLEETLLTTQTVYFQVALLYTASCG 737
KG+RF++YHGNFMLRSTDLLALPAVDCDKAYAMQLSLEETLLT+QTVYFQVALLYTASCG
Sbjct: 696 KGIRFSSYHGNFMLRSTDLLALPAVDCDKAYAMQLSLEETLLTSQTVYFQVALLYTASCG 755
Query: 738 ERRIRVHTLAAPVVSNLSDMYQQADTGAIVSVFSRLAIEKTLSHKLEDARNAVQLRLVKA 797
ERRIRVHT APVV++L +MY+QADTG+IVS+++RLAIEK+LS KL+DARNA+Q ++VKA
Sbjct: 756 ERRIRVHTSVAPVVTDLGEMYRQADTGSIVSLYARLAIEKSLSAKLDDARNAIQQKIVKA 815
Query: 798 LKEYRNLYAVQHRLGSRMIYPESLKFLPF 826
LKEYRNL+AVQHRLGSR++YPESLKFLP
Sbjct: 816 LKEYRNLHAVQHRLGSRLVYPESLKFLPL 844
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Component of the COPII coat, that covers ER-derived vesicles involved in transport from the endoplasmic reticulum to the Golgi apparatus. COPII is composed of at least five proteins: the SEC23/24 complex, the SEC13/31 complex, and the protein SAR1. Acts in the cytoplasm to promote the transport of secretory, plasma membrane, and vacuolar proteins from the endoplasmic reticulum to the Golgi complex. Arabidopsis thaliana (taxid: 3702) |
| >sp|O95486|SC24A_HUMAN Protein transport protein Sec24A OS=Homo sapiens GN=SEC24A PE=1 SV=2 | Back alignment and function description |
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| >sp|A6QNT8|SC24A_BOVIN Protein transport protein Sec24A OS=Bos taurus GN=SEC24A PE=2 SV=1 | Back alignment and function description |
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| >sp|Q3U2P1|SC24A_MOUSE Protein transport protein Sec24A OS=Mus musculus GN=Sec24a PE=1 SV=1 | Back alignment and function description |
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| >sp|O95487|SC24B_HUMAN Protein transport protein Sec24B OS=Homo sapiens GN=SEC24B PE=1 SV=2 | Back alignment and function description |
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| >sp|Q54U61|SEC24_DICDI Protein transport protein SEC24 OS=Dictyostelium discoideum GN=sec24 PE=3 SV=1 | Back alignment and function description |
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| >sp|Q1E6U9|SEC24_COCIM Protein transport protein SEC24 OS=Coccidioides immitis (strain RS) GN=SEC24 PE=3 SV=2 | Back alignment and function description |
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| >sp|Q5B6W0|SEC24_EMENI Protein transport protein sec24 OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=sec24 PE=3 SV=1 | Back alignment and function description |
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| >sp|Q4P9K4|SEC24_USTMA Protein transport protein SEC24 OS=Ustilago maydis (strain 521 / FGSC 9021) GN=SEC24 PE=3 SV=1 | Back alignment and function description |
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| >sp|Q4WLP1|SEC24_ASPFU Protein transport protein sec24 OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) GN=sec24 PE=3 SV=2 | Back alignment and function description |
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Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 835 | ||||||
| 225461570 | 1052 | PREDICTED: protein transport protein Sec | 0.985 | 0.782 | 0.748 | 0.0 | |
| 255584639 | 1031 | Protein transport protein Sec24A, putati | 0.960 | 0.777 | 0.727 | 0.0 | |
| 224112873 | 1037 | predicted protein [Populus trichocarpa] | 0.964 | 0.776 | 0.720 | 0.0 | |
| 224098222 | 1043 | predicted protein [Populus trichocarpa] | 0.968 | 0.775 | 0.715 | 0.0 | |
| 449508633 | 1031 | PREDICTED: protein transport protein Sec | 0.962 | 0.779 | 0.716 | 0.0 | |
| 449435952 | 1031 | PREDICTED: protein transport protein Sec | 0.962 | 0.779 | 0.716 | 0.0 | |
| 302142943 | 944 | unnamed protein product [Vitis vinifera] | 0.876 | 0.775 | 0.702 | 0.0 | |
| 356571052 | 1026 | PREDICTED: protein transport protein Sec | 0.949 | 0.772 | 0.686 | 0.0 | |
| 297833488 | 1036 | hypothetical protein ARALYDRAFT_478029 [ | 0.958 | 0.772 | 0.660 | 0.0 | |
| 6642655 | 1054 | putative Sec24-like COPII protein [Arabi | 0.959 | 0.759 | 0.662 | 0.0 |
| >gi|225461570|ref|XP_002282857.1| PREDICTED: protein transport protein Sec24-like At3g07100-like [Vitis vinifera] | Back alignment and taxonomy information |
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Score = 1254 bits (3244), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 647/864 (74%), Positives = 707/864 (81%), Gaps = 41/864 (4%)
Query: 1 MGTENPGRSSFPARPSASPFASAPPTVTPFSSAGPVVGSEASSFRPAPPASPQTAAPFMS 60
MGTENP R SFPARP+A+PFA+ P PF S+GPVVGS+AS FRP P ++PQ A PF+S
Sbjct: 1 MGTENPNRPSFPARPAATPFAAGPQPTMPFLSSGPVVGSQASGFRPTPSSTPQAAMPFLS 60
Query: 61 AAAGVGSDSSGFRPSTPQTRFNDPSVSSSPITYVPPTSGPFQRFPTPQFPPVAQAPPVRG 120
+ VG ++SGFRP TP RF+DPS+ S P PPT GPFQRF TPQ P AQAPP R
Sbjct: 61 SGPVVGPETSGFRP-TPPGRFSDPSLPSVPSANAPPTLGPFQRFTTPQNPSTAQAPPARP 119
Query: 121 PPVGLPPVSHPI----GQVPNPPVPLR--AQPPPVPMGSPVQRANFAPSGVNVPQPLSDS 174
PVG P P+ GQVP PV R +Q P VPMGSP Q N AP N PQPL DS
Sbjct: 120 LPVGQPVFPPPVQPPAGQVP--PVSFRPQSQLPSVPMGSPPQSMNSAPLRANAPQPLLDS 177
Query: 175 SFSASRP-----NSPPDSSYPFARPTPQQPLPGYVTTQPNAVSQGPTMPSSFPSHPRSYV 229
SFSASRP PP+S+YP AR Q PGY + Q NAV Q P + S F + Y
Sbjct: 178 SFSASRPPFQPSFLPPESTYPAARANLQPSFPGYPSKQSNAVPQAPAVQSPFLTQQGGYA 237
Query: 230 PPPPTSASSFPAHQGGYVPP-------GVQS----QH--SGPPVGVIQGLAEDFSSLSFG 276
PPTS+ F A GGY+PP G+ S QH +GPP+G +QGL EDFSSLS G
Sbjct: 238 AAPPTSSPPFLAQPGGYIPPPPVAAPLGLHSREQMQHPGTGPPIGAVQGLIEDFSSLSVG 297
Query: 277 SIPGSIEPGIDLKSLPRPLDGDVEPSSLAETYPLNCHSRYLRLTTSAIPNSQSLVSRWHL 336
S+PGSI+ GID K+LPRPL+GDVEP+S AE YP+NCHSRYLRLTTS IPNSQSLVSRWHL
Sbjct: 298 SVPGSIDLGIDSKALPRPLEGDVEPNSFAEMYPMNCHSRYLRLTTSGIPNSQSLVSRWHL 357
Query: 337 PLGAVVCPLAEPPEGNLF--------------ICRTYVNPYVTFTDAGRKWRCNICALLN 382
PLGAVVCPLA PP+G CRTYVNPYVTFTD GRKWRCNIC+LLN
Sbjct: 358 PLGAVVCPLAVPPDGEEVPIVNFAATGIIRCRRCRTYVNPYVTFTDGGRKWRCNICSLLN 417
Query: 383 DVPGDYFAHLDATGRRIDIDQRPELTKGSVEFVAPTEYMVRPPMPPLYFFLIDVSISAIR 442
DV GDYF+HLDA GRRID+DQRPEL KGSVEFVAPTEYMVRPPMPPLYFFLIDVS+SA+R
Sbjct: 418 DVSGDYFSHLDAIGRRIDLDQRPELIKGSVEFVAPTEYMVRPPMPPLYFFLIDVSLSAVR 477
Query: 443 SGMLEVVAQTIKSCLDELPGFPRTQIGFITFDSTIHFYNMKSSLTQPQMMVISDLDDIFV 502
SGMLEVVAQTI+SCLDELPG RTQIGFITFDSTIHFYNMKSSLTQPQMMV+SDLDDIFV
Sbjct: 478 SGMLEVVAQTIRSCLDELPGSTRTQIGFITFDSTIHFYNMKSSLTQPQMMVVSDLDDIFV 537
Query: 503 PLPDDLLVNLSESRSVVDTLLDSLPSMFQDNMNVESAFGPALKAAFMVMSRLGGKLLIFQ 562
PLPDDLLVNLSESRSVV+T LDSLPSMFQDN+N+ESAFGPALKAAFMVMS+LGGKLLIFQ
Sbjct: 538 PLPDDLLVNLSESRSVVETFLDSLPSMFQDNVNLESAFGPALKAAFMVMSQLGGKLLIFQ 597
Query: 563 NSLPSLGVGCLKLRGDDLRVYGTDKEHSLRIPEDPFYKQMAADLTKFQIAVNVYAFSDKY 622
N+LPSLGVG LKLRGDDLRVYGTDKEH+LR+PEDPFYKQMAADLTK+QIAVN+YAFSDKY
Sbjct: 598 NTLPSLGVGRLKLRGDDLRVYGTDKEHALRLPEDPFYKQMAADLTKYQIAVNIYAFSDKY 657
Query: 623 TDIASLGTLAKYTGGQVYYYPSFQSTTHGERLRHELSRDLTRETAWEAVMRIRCGKGVRF 682
TDIASLGTLAKYTGGQVYYYPSF S H +RLRHELSRDLTRETAWEAVMRIRCGKGVRF
Sbjct: 658 TDIASLGTLAKYTGGQVYYYPSFLSIIHKDRLRHELSRDLTRETAWEAVMRIRCGKGVRF 717
Query: 683 TNYHGNFMLRSTDLLALPAVDCDKAYAMQLSLEETLLTTQTVYFQVALLYTASCGERRIR 742
T+YHGNFMLRSTDLLALPAVDCDKA+AMQL LEETLLTTQTVYFQVALLYT+S GERRIR
Sbjct: 718 TSYHGNFMLRSTDLLALPAVDCDKAFAMQLCLEETLLTTQTVYFQVALLYTSSSGERRIR 777
Query: 743 VHTLAAPVVSNLSDMYQQADTGAIVSVFSRLAIEKTLSHKLEDARNAVQLRLVKALKEYR 802
VHT AAPVV++L +MY+QADTGA+VS+F RLAIEKTLSHKLEDARN+VQLRLVKA KEYR
Sbjct: 778 VHTAAAPVVADLGEMYRQADTGAVVSLFCRLAIEKTLSHKLEDARNSVQLRLVKAFKEYR 837
Query: 803 NLYAVQHRLGSRMIYPESLKFLPF 826
NLYAVQHRLG RMIYPESLK LP
Sbjct: 838 NLYAVQHRLGGRMIYPESLKLLPL 861
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Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255584639|ref|XP_002533043.1| Protein transport protein Sec24A, putative [Ricinus communis] gi|223527181|gb|EEF29351.1| Protein transport protein Sec24A, putative [Ricinus communis] | Back alignment and taxonomy information |
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| >gi|224112873|ref|XP_002316316.1| predicted protein [Populus trichocarpa] gi|222865356|gb|EEF02487.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
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| >gi|224098222|ref|XP_002311138.1| predicted protein [Populus trichocarpa] gi|222850958|gb|EEE88505.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
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| >gi|449508633|ref|XP_004163368.1| PREDICTED: protein transport protein Sec24-like At3g07100-like [Cucumis sativus] | Back alignment and taxonomy information |
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| >gi|449435952|ref|XP_004135758.1| PREDICTED: protein transport protein Sec24-like At3g07100-like [Cucumis sativus] | Back alignment and taxonomy information |
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| >gi|302142943|emb|CBI20238.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|356571052|ref|XP_003553695.1| PREDICTED: protein transport protein Sec24-like At3g07100-like [Glycine max] | Back alignment and taxonomy information |
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| >gi|297833488|ref|XP_002884626.1| hypothetical protein ARALYDRAFT_478029 [Arabidopsis lyrata subsp. lyrata] gi|297330466|gb|EFH60885.1| hypothetical protein ARALYDRAFT_478029 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
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| >gi|6642655|gb|AAF20236.1|AC012395_23 putative Sec24-like COPII protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
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Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 835 | ||||||
| TAIR|locus:2098545 | 1038 | ERMO2 "AT3G07100" [Arabidopsis | 0.795 | 0.639 | 0.711 | 2e-263 | |
| UNIPROTKB|E1BPR4 | 1247 | SEC24B "Uncharacterized protei | 0.776 | 0.519 | 0.395 | 5.1e-123 | |
| UNIPROTKB|E1BSA7 | 1100 | SEC24A "Uncharacterized protei | 0.680 | 0.516 | 0.419 | 2.5e-122 | |
| UNIPROTKB|B7ZKM8 | 1298 | SEC24B "SEC24B protein" [Homo | 0.784 | 0.504 | 0.393 | 5.8e-122 | |
| UNIPROTKB|O95487 | 1268 | SEC24B "Protein transport prot | 0.785 | 0.517 | 0.393 | 5.8e-122 | |
| UNIPROTKB|O95486 | 1093 | SEC24A "Protein transport prot | 0.791 | 0.604 | 0.383 | 7.4e-122 | |
| UNIPROTKB|F1RHC7 | 1144 | SEC24A "Uncharacterized protei | 0.682 | 0.498 | 0.413 | 8.2e-122 | |
| RGD|1309451 | 1089 | Sec24a "SEC24 family, member A | 0.682 | 0.523 | 0.413 | 3.5e-121 | |
| UNIPROTKB|A6QNT8 | 1099 | SEC24A "Protein transport prot | 0.683 | 0.519 | 0.421 | 6.6e-121 | |
| MGI|MGI:1924621 | 1090 | Sec24a "Sec24 related gene fam | 0.682 | 0.522 | 0.416 | 1.1e-120 |
| TAIR|locus:2098545 ERMO2 "AT3G07100" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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Score = 2501 (885.5 bits), Expect = 2.0e-263, Sum P(2) = 2.0e-263
Identities = 498/700 (71%), Positives = 560/700 (80%)
Query: 151 MGSPVQRANFAPSGVNVPQPLSDSSFSASRP----NSPPDS-SYPFARPTPQQPLPGYVT 205
MG P Q G N P +D A RP + PP + SYP + Q PGY +
Sbjct: 155 MGPPPQSTTSGLPGANAYPPATDYHMPA-RPGFQQSMPPVTPSYPGVGGS-QPSFPGYPS 212
Query: 206 TQPNAVSQGPTMPSSFXXXXXXXXXXXXXXXXXXXXHQGGYVP-PGVQSQHS-----GPP 259
Q V Q PT P H GG+ P + +Q + PP
Sbjct: 213 KQ---VLQAPT-PFQ-----TSQGPPGPPPVSSYPPHTGGFAQRPNMAAQQNLHPNYAPP 263
Query: 260 VGVIQGLAEDFSSLSFGSIPGSIEPGIDLKSLPRPLDGDVEPSSLAETYPLNCHSRYLRL 319
+QGL EDF+SLS SIPGS+EPG+D KS PRPLDGDVEP+S AE YP+NCHSRYLRL
Sbjct: 264 PSNVQGLTEDFNSLSLSSIPGSLEPGLDHKSFPRPLDGDVEPNSFAEMYPMNCHSRYLRL 323
Query: 320 TTSAIPNSQSLVSRWHLPLGAVVCPLAEPPEGNL--FI------------CRTYVNPYVT 365
TTSAIPNSQSL SRWHLPLGAVVCPLAE PEG I CRTYVNP+VT
Sbjct: 324 TTSAIPNSQSLASRWHLPLGAVVCPLAETPEGEEVPLIDFGSTGIIRCRRCRTYVNPFVT 383
Query: 366 FTDAGRKWRCNICALLNDVPGDYFAHLDATGRRIDIDQRPELTKGSVEFVAPTEYMVRPP 425
FTD+GRKWRCNIC++LNDVPG+YF+HLDATGRR+D+DQRPELTKGSVE +APTEYMVRPP
Sbjct: 384 FTDSGRKWRCNICSMLNDVPGEYFSHLDATGRRMDMDQRPELTKGSVEIIAPTEYMVRPP 443
Query: 426 MPPLYFFLIDVSISAIRSGMLEVVAQTIKSCLDELPGFPRTQIGFITFDSTIHFYNMKSS 485
MPP+YFFLIDVSISA +SGMLEVVAQTIKSCLD LPG+PRTQIGFIT+DST+HFYNMKSS
Sbjct: 444 MPPIYFFLIDVSISATKSGMLEVVAQTIKSCLDNLPGYPRTQIGFITYDSTLHFYNMKSS 503
Query: 486 LTQPQMMVISDLDDIFVPLPDDLLVNLSESRSVVDTLLDSLPSMFQDNMNVESAFGPALK 545
L+QPQMMV+SDLDDIFVPLPDDLLVNLSESR+VVD LDSLP MFQDN NVESAFGPAL+
Sbjct: 504 LSQPQMMVVSDLDDIFVPLPDDLLVNLSESRTVVDAFLDSLPLMFQDNFNVESAFGPALR 563
Query: 546 AAFMVMSRLGGKLLIFQNSLPSLGVGCLKLRGDDLRVYGTDKEHSLRIPEDPFYKQMAAD 605
AAFMVM++LGGKLLIFQNSLPSLG G LKLRGDD RVYGTDKE++LR+ EDPFYKQMAAD
Sbjct: 564 AAFMVMNQLGGKLLIFQNSLPSLGAGRLKLRGDDPRVYGTDKEYALRVAEDPFYKQMAAD 623
Query: 606 LTKFQIAVNVYAFSDKYTDIASLGTLAKYTGGQVYYYPSFQSTTHGERLRHELSRDLTRE 665
TKFQI +NVYAFSDKYTDIASLGTLAKYTGGQVYYYP FQS+ HG++LRHEL+RDLTRE
Sbjct: 624 CTKFQIGINVYAFSDKYTDIASLGTLAKYTGGQVYYYPGFQSSVHGDKLRHELARDLTRE 683
Query: 666 TAWEAVMRIRCGKGVRFTNYHGNFMLRSTDLLALPAVDCDKAYAMXXXXXXXXXXXXXVY 725
TAWEAVMRIRCGKG+RF++YHGNFMLRSTDLLALPAVDCDKAYAM VY
Sbjct: 684 TAWEAVMRIRCGKGIRFSSYHGNFMLRSTDLLALPAVDCDKAYAMQLSLEETLLTSQTVY 743
Query: 726 FQVALLYTASCGERRIRVHTLAAPVVSNLSDMYQQADTGAIVSVFSRLAIEKTLSHKLED 785
FQVALLYTASCGERRIRVHT APVV++L +MY+QADTG+IVS+++RLAIEK+LS KL+D
Sbjct: 744 FQVALLYTASCGERRIRVHTSVAPVVTDLGEMYRQADTGSIVSLYARLAIEKSLSAKLDD 803
Query: 786 ARNAVQLRLVKALKEYRNLYAVQHRLGSRMIYPESLKFLP 825
ARNA+Q ++VKALKEYRNL+AVQHRLGSR++YPESLKFLP
Sbjct: 804 ARNAIQQKIVKALKEYRNLHAVQHRLGSRLVYPESLKFLP 843
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| UNIPROTKB|E1BPR4 SEC24B "Uncharacterized protein" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
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| UNIPROTKB|E1BSA7 SEC24A "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
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| UNIPROTKB|B7ZKM8 SEC24B "SEC24B protein" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
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| UNIPROTKB|O95487 SEC24B "Protein transport protein Sec24B" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
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| UNIPROTKB|O95486 SEC24A "Protein transport protein Sec24A" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
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| UNIPROTKB|F1RHC7 SEC24A "Uncharacterized protein" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
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| RGD|1309451 Sec24a "SEC24 family, member A (S. cerevisiae)" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|A6QNT8 SEC24A "Protein transport protein Sec24A" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
| MGI|MGI:1924621 Sec24a "Sec24 related gene family, member A (S. cerevisiae)" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q9SFU0 | SC24A_ARATH | No assigned EC number | 0.6593 | 0.9592 | 0.7716 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
 |
 |
 |
 |
 |
 |
 |
 |
 |
|||
 | eugene3.00102048 | hypothetical protein (1037 aa) | |||||||||
(Populus trichocarpa) | |||||||||||
 | estExt_fgenesh4_pg.C_LG_XV0440 | • | • | • | 0.840 | ||||||
 | estExt_fgenesh4_pg.C_LG_X0913 | • | • | • | 0.839 | ||||||
 | estExt_fgenesh4_pg.C_LG_IX1026 | • | • | 0.811 | |||||||
 | gw1.I.1579.1 | • | • | 0.809 |
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 835 | |||
| COG5028 | 861 | COG5028, COG5028, Vesicle coat complex COPII, subu | 1e-140 | |
| cd01479 | 244 | cd01479, Sec24-like, Sec24-like: Protein and membr | 1e-119 | |
| pfam04811 | 241 | pfam04811, Sec23_trunk, Sec23/Sec24 trunk domain | 1e-100 | |
| cd01468 | 239 | cd01468, trunk_domain, trunk domain | 1e-95 | |
| PTZ00395 | 1560 | PTZ00395, PTZ00395, Sec24-related protein; Provisi | 5e-32 | |
| pfam08033 | 86 | pfam08033, Sec23_BS, Sec23/Sec24 beta-sandwich dom | 2e-30 | |
| pfam04810 | 39 | pfam04810, zf-Sec23_Sec24, Sec23/Sec24 zinc finger | 2e-13 | |
| PHA03247 | 3151 | PHA03247, PHA03247, large tegument protein UL36; P | 4e-11 | |
| PHA03247 | 3151 | PHA03247, PHA03247, large tegument protein UL36; P | 5e-11 | |
| PHA03247 | 3151 | PHA03247, PHA03247, large tegument protein UL36; P | 2e-10 | |
| PLN00162 | 761 | PLN00162, PLN00162, transport protein sec23; Provi | 4e-10 | |
| pfam04815 | 103 | pfam04815, Sec23_helical, Sec23/Sec24 helical doma | 6e-10 | |
| PRK12323 | 700 | PRK12323, PRK12323, DNA polymerase III subunits ga | 3e-08 | |
| PHA03307 | 1352 | PHA03307, PHA03307, transcriptional regulator ICP4 | 4e-08 | |
| PHA03247 | 3151 | PHA03247, PHA03247, large tegument protein UL36; P | 2e-07 | |
| PRK12323 | 700 | PRK12323, PRK12323, DNA polymerase III subunits ga | 2e-07 | |
| PRK12323 | 700 | PRK12323, PRK12323, DNA polymerase III subunits ga | 3e-07 | |
| pfam09770 | 804 | pfam09770, PAT1, Topoisomerase II-associated prote | 8e-07 | |
| pfam09770 | 804 | pfam09770, PAT1, Topoisomerase II-associated prote | 1e-06 | |
| PRK07764 | 824 | PRK07764, PRK07764, DNA polymerase III subunits ga | 1e-06 | |
| PRK07764 | 824 | PRK07764, PRK07764, DNA polymerase III subunits ga | 1e-06 | |
| COG5047 | 755 | COG5047, SEC23, Vesicle coat complex COPII, subuni | 3e-06 | |
| pfam03154 | 979 | pfam03154, Atrophin-1, Atrophin-1 family | 8e-06 | |
| pfam09770 | 804 | pfam09770, PAT1, Topoisomerase II-associated prote | 1e-05 | |
| pfam09770 | 804 | pfam09770, PAT1, Topoisomerase II-associated prote | 2e-05 | |
| PRK07764 | 824 | PRK07764, PRK07764, DNA polymerase III subunits ga | 2e-05 | |
| PRK07764 | 824 | PRK07764, PRK07764, DNA polymerase III subunits ga | 3e-05 | |
| pfam05044 | 908 | pfam05044, Prox1, Homeobox prospero-like protein ( | 3e-05 | |
| pfam03153 | 332 | pfam03153, TFIIA, Transcription factor IIA, alpha/ | 5e-05 | |
| PHA03247 | 3151 | PHA03247, PHA03247, large tegument protein UL36; P | 6e-05 | |
| PRK07003 | 830 | PRK07003, PRK07003, DNA polymerase III subunits ga | 9e-05 | |
| PRK07003 | 830 | PRK07003, PRK07003, DNA polymerase III subunits ga | 9e-05 | |
| pfam03154 | 979 | pfam03154, Atrophin-1, Atrophin-1 family | 1e-04 | |
| pfam04652 | 315 | pfam04652, DUF605, Vta1 like | 1e-04 | |
| PRK12323 | 700 | PRK12323, PRK12323, DNA polymerase III subunits ga | 2e-04 | |
| PRK07764 | 824 | PRK07764, PRK07764, DNA polymerase III subunits ga | 2e-04 | |
| PRK14086 | 617 | PRK14086, dnaA, chromosomal replication initiation | 4e-04 | |
| PRK07764 | 824 | PRK07764, PRK07764, DNA polymerase III subunits ga | 6e-04 | |
| PRK14951 | 618 | PRK14951, PRK14951, DNA polymerase III subunits ga | 7e-04 | |
| pfam04652 | 315 | pfam04652, DUF605, Vta1 like | 8e-04 | |
| PHA03307 | 1352 | PHA03307, PHA03307, transcriptional regulator ICP4 | 0.001 | |
| PHA03307 | 1352 | PHA03307, PHA03307, transcriptional regulator ICP4 | 0.001 | |
| pfam04652 | 315 | pfam04652, DUF605, Vta1 like | 0.001 | |
| PRK14951 | 618 | PRK14951, PRK14951, DNA polymerase III subunits ga | 0.001 | |
| PHA03378 | 991 | PHA03378, PHA03378, EBNA-3B; Provisional | 0.001 | |
| PRK07764 | 824 | PRK07764, PRK07764, DNA polymerase III subunits ga | 0.002 | |
| pfam03154 | 979 | pfam03154, Atrophin-1, Atrophin-1 family | 0.002 | |
| PRK07994 | 647 | PRK07994, PRK07994, DNA polymerase III subunits ga | 0.002 | |
| pfam07223 | 357 | pfam07223, DUF1421, Protein of unknown function (D | 0.002 | |
| PRK07764 | 824 | PRK07764, PRK07764, DNA polymerase III subunits ga | 0.003 | |
| pfam05518 | 753 | pfam05518, Totivirus_coat, Totivirus coat protein | 0.003 | |
| PRK03427 | 333 | PRK03427, PRK03427, cell division protein ZipA; Pr | 0.004 | |
| PLN03209 | 576 | PLN03209, PLN03209, translocon at the inner envelo | 0.004 | |
| PRK12799 | 421 | PRK12799, motB, flagellar motor protein MotB; Revi | 0.004 |
| >gnl|CDD|227361 COG5028, COG5028, Vesicle coat complex COPII, subunit SEC24/subunit SFB2/subunit SFB3 [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Score = 435 bits (1121), Expect = e-140
Identities = 231/679 (34%), Positives = 354/679 (52%), Gaps = 54/679 (7%)
Query: 188 SYPFARPTPQQPLPGYVTTQPNAVSQGPTMPSSFPSHPRSYVPPPPTS-----------A 236
S PQ + + S P + S + +PP T
Sbjct: 2 SQHKKGVYPQAQSQVHTGAASSKKSARPHRAYANFSAGQMGMPPYTTPPLQQQSRRQIDQ 61
Query: 237 SSFPAHQGG-------YVPPGVQSQHSGPPVGVIQGLAEDFSSLSFGSIPGSIEPGIDLK 289
++ H G + P QSQ + +P + D
Sbjct: 62 AATAMHNTGANNPAPSVMSPAFQSQQKFSSPYGGSMADGTAPKPTNPLVPVDLFE--DQP 119
Query: 290 SLPRPLDGDVEPSSLAETYPL------NCHSRYLRLTTSAIPNSQSLVSRWHLPLGAVVC 343
L P T NC +Y+R T AIP + L+ + +P G V+
Sbjct: 120 PPISDLFLPPPPIVPPLTTNFVGSEQSNCSPKYVRSTMYAIPETNDLLKKSKIPFGLVIR 179
Query: 344 PLAE------PPEGNLFI-------CRTYVNPYVTFTDAGRKWRCNICALLNDVPGDYFA 390
P E P CR+Y+NP+V F + GRKWRCNIC NDVP +
Sbjct: 180 PFLELYPEEDPVPLVEDGSIVRCRRCRSYINPFVQFIEQGRKWRCNICRSKNDVPEGFDN 239
Query: 391 HLDATGRRIDIDQRPELTKGSVEFVAPTEYMVRPPMPPLYFFLIDVSISAIRSGMLEVVA 450
R D RPEL G V+F+AP EY +R P PP+Y FLIDVS AI++G+++
Sbjct: 240 PSGPNDPRSDRYSRPELKSGVVDFLAPKEYSLRQPPPPVYVFLIDVSFEAIKNGLVKAAI 299
Query: 451 QTIKSCLDELPGF-PRTQIGFITFDSTIHFYNMKSSLTQPQMMVISDLDDIFVPLP-DDL 508
+ I LD++P F PRT+I I FDS++HF+ + L + QM+++SDLD+ F+P P
Sbjct: 300 RAILENLDQIPNFDPRTKIAIICFDSSLHFFKLSPDLDE-QMLIVSDLDEPFLPFPSGLF 358
Query: 509 LVNLSESRSVVDTLLDSLPSMFQDNMNVESAFGPALKAAFMVMSRLGGKLLIFQNSLPSL 568
++ L + +++TLLD +P +FQDN + ++A GPALKAA ++ GGK+++F ++LP++
Sbjct: 359 VLPLKSCKQIIETLLDRVPRIFQDNKSPKNALGPALKAAKSLIGGTGGKIIVFLSTLPNM 418
Query: 569 GVGCLKLRGDDLRVYGTDKEHSLRIPEDPFYKQMAADLTKFQIAVNVYAFSDKYTDIASL 628
G+G L+LR DKE SL +D FYK+ A + +K I+V+++ S+ Y D+A+L
Sbjct: 419 GIGKLQLR--------EDKESSLLSCKDSFYKEFAIECSKVGISVDLFLTSEDYIDVATL 470
Query: 629 GTLAKYTGGQVYYYPSFQSTTH--GERLRHELSRDLTRETAWEAVMRIRCGKGVRFTNYH 686
L +YTGGQ Y+YP+F +T +L ++L L+ E +EAVMR+RC G+R ++++
Sbjct: 471 SHLCRYTGGQTYFYPNFSATRPNDATKLANDLVSHLSMEIGYEAVMRVRCSTGLRVSSFY 530
Query: 687 GNFMLRSTDLLALPAVDCDKAYAMQLSLEETLLTTQTVYFQVALLYTASCGERRIRVHTL 746
GNF RS+DL A + D + ++ S++E L+T+ VYFQVALLYT + GERRIRV L
Sbjct: 531 GNFFNRSSDLCAFSTMPRDTSLLVEFSIDEKLMTSD-VYFQVALLYTLNDGERRIRVVNL 589
Query: 747 AAPVVSNLSDMYQQADTGAIVSVFSRLAIEKTLSHKLEDARNAVQLRLVKALKEYRNLYA 806
+ P S++ ++Y AD AI + ++ A K L+ L++AR + +V LK Y+
Sbjct: 590 SLPTSSSIREVYASADQLAIACILAKKASTKALNSSLKEARVLINKSMVDILKAYKKELV 649
Query: 807 VQHRLGSRMIYPESLKFLP 825
+ +++ P +LK LP
Sbjct: 650 KSN-TSTQLPLPANLKLLP 667
|
Length = 861 |
| >gnl|CDD|238756 cd01479, Sec24-like, Sec24-like: Protein and membrane traffic in eukaryotes is mediated by at least in part by the budding and fusion of intracellular transport vesicles that selectively carry cargo proteins and lipids from donor to acceptor organelles | Back alignment and domain information |
|---|
| >gnl|CDD|147125 pfam04811, Sec23_trunk, Sec23/Sec24 trunk domain | Back alignment and domain information |
|---|
| >gnl|CDD|238745 cd01468, trunk_domain, trunk domain | Back alignment and domain information |
|---|
| >gnl|CDD|185594 PTZ00395, PTZ00395, Sec24-related protein; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|219707 pfam08033, Sec23_BS, Sec23/Sec24 beta-sandwich domain | Back alignment and domain information |
|---|
| >gnl|CDD|203092 pfam04810, zf-Sec23_Sec24, Sec23/Sec24 zinc finger | Back alignment and domain information |
|---|
| >gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|215083 PLN00162, PLN00162, transport protein sec23; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|218277 pfam04815, Sec23_helical, Sec23/Sec24 helical domain | Back alignment and domain information |
|---|
| >gnl|CDD|237057 PRK12323, PRK12323, DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|223039 PHA03307, PHA03307, transcriptional regulator ICP4; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|237057 PRK12323, PRK12323, DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|237057 PRK12323, PRK12323, DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|220392 pfam09770, PAT1, Topoisomerase II-associated protein PAT1 | Back alignment and domain information |
|---|
| >gnl|CDD|220392 pfam09770, PAT1, Topoisomerase II-associated protein PAT1 | Back alignment and domain information |
|---|
| >gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
| >gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
| >gnl|CDD|227380 COG5047, SEC23, Vesicle coat complex COPII, subunit SEC23 [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
| >gnl|CDD|217393 pfam03154, Atrophin-1, Atrophin-1 family | Back alignment and domain information |
|---|
| >gnl|CDD|220392 pfam09770, PAT1, Topoisomerase II-associated protein PAT1 | Back alignment and domain information |
|---|
| >gnl|CDD|220392 pfam09770, PAT1, Topoisomerase II-associated protein PAT1 | Back alignment and domain information |
|---|
| >gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
| >gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
| >gnl|CDD|218397 pfam05044, Prox1, Homeobox prospero-like protein (PROX1) | Back alignment and domain information |
|---|
| >gnl|CDD|217392 pfam03153, TFIIA, Transcription factor IIA, alpha/beta subunit | Back alignment and domain information |
|---|
| >gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|235906 PRK07003, PRK07003, DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
| >gnl|CDD|235906 PRK07003, PRK07003, DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
| >gnl|CDD|217393 pfam03154, Atrophin-1, Atrophin-1 family | Back alignment and domain information |
|---|
| >gnl|CDD|218191 pfam04652, DUF605, Vta1 like | Back alignment and domain information |
|---|
| >gnl|CDD|237057 PRK12323, PRK12323, DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
| >gnl|CDD|237605 PRK14086, dnaA, chromosomal replication initiation protein; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
| >gnl|CDD|237865 PRK14951, PRK14951, DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|218191 pfam04652, DUF605, Vta1 like | Back alignment and domain information |
|---|
| >gnl|CDD|223039 PHA03307, PHA03307, transcriptional regulator ICP4; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|223039 PHA03307, PHA03307, transcriptional regulator ICP4; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|218191 pfam04652, DUF605, Vta1 like | Back alignment and domain information |
|---|
| >gnl|CDD|237865 PRK14951, PRK14951, DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|223065 PHA03378, PHA03378, EBNA-3B; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
| >gnl|CDD|217393 pfam03154, Atrophin-1, Atrophin-1 family | Back alignment and domain information |
|---|
| >gnl|CDD|236138 PRK07994, PRK07994, DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
| >gnl|CDD|219339 pfam07223, DUF1421, Protein of unknown function (DUF1421) | Back alignment and domain information |
|---|
| >gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
| >gnl|CDD|218621 pfam05518, Totivirus_coat, Totivirus coat protein | Back alignment and domain information |
|---|
| >gnl|CDD|235124 PRK03427, PRK03427, cell division protein ZipA; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|178748 PLN03209, PLN03209, translocon at the inner envelope of chloroplast subunit 62; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|183756 PRK12799, motB, flagellar motor protein MotB; Reviewed | Back alignment and domain information |
|---|
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 835 | |||
| KOG1984 | 1007 | consensus Vesicle coat complex COPII, subunit SFB3 | 100.0 | |
| KOG1985 | 887 | consensus Vesicle coat complex COPII, subunit SEC2 | 100.0 | |
| COG5028 | 861 | Vesicle coat complex COPII, subunit SEC24/subunit | 100.0 | |
| PTZ00395 | 1560 | Sec24-related protein; Provisional | 100.0 | |
| PLN00162 | 761 | transport protein sec23; Provisional | 100.0 | |
| KOG1986 | 745 | consensus Vesicle coat complex COPII, subunit SEC2 | 100.0 | |
| COG5047 | 755 | SEC23 Vesicle coat complex COPII, subunit SEC23 [I | 100.0 | |
| cd01479 | 244 | Sec24-like Sec24-like: Protein and membrane traffi | 100.0 | |
| cd01468 | 239 | trunk_domain trunk domain. COPII-coated vesicles c | 100.0 | |
| PF04811 | 243 | Sec23_trunk: Sec23/Sec24 trunk domain; InterPro: I | 100.0 | |
| cd01478 | 267 | Sec23-like Sec23-like: Protein and membrane traffi | 100.0 | |
| PF08033 | 96 | Sec23_BS: Sec23/Sec24 beta-sandwich domain; InterP | 99.85 | |
| PF04815 | 103 | Sec23_helical: Sec23/Sec24 helical domain; InterPr | 99.51 | |
| PF04810 | 40 | zf-Sec23_Sec24: Sec23/Sec24 zinc finger; InterPro: | 99.21 | |
| PRK13685 | 326 | hypothetical protein; Provisional | 98.86 | |
| cd01453 | 183 | vWA_transcription_factor_IIH_type Transcription fa | 98.81 | |
| cd01467 | 180 | vWA_BatA_type VWA BatA type: Von Willebrand factor | 98.67 | |
| cd01465 | 170 | vWA_subgroup VWA subgroup: Von Willebrand factor t | 98.65 | |
| cd01451 | 178 | vWA_Magnesium_chelatase Magnesium chelatase: Mg-ch | 98.61 | |
| cd01466 | 155 | vWA_C3HC4_type VWA C3HC4-type: Von Willebrand fact | 98.59 | |
| cd01456 | 206 | vWA_ywmD_type VWA ywmD type:Von Willebrand factor | 98.59 | |
| cd01463 | 190 | vWA_VGCC_like VWA Voltage gated Calcium channel li | 98.58 | |
| TIGR00868 | 863 | hCaCC calcium-activated chloride channel protein 1 | 98.5 | |
| cd01474 | 185 | vWA_ATR ATR (Anthrax Toxin Receptor): Anthrax toxi | 98.47 | |
| PF13519 | 172 | VWA_2: von Willebrand factor type A domain; PDB: 3 | 98.45 | |
| TIGR03788 | 596 | marine_srt_targ marine proteobacterial sortase tar | 98.39 | |
| TIGR03436 | 296 | acidobact_VWFA VWFA-related Acidobacterial domain. | 98.38 | |
| cd01470 | 198 | vWA_complement_factors Complement factors B and C2 | 98.37 | |
| cd01472 | 164 | vWA_collagen von Willebrand factor (vWF) type A do | 98.35 | |
| cd01461 | 171 | vWA_interalpha_trypsin_inhibitor vWA_interalpha tr | 98.35 | |
| cd01452 | 187 | VWA_26S_proteasome_subunit 26S proteasome plays a | 98.24 | |
| PF13768 | 155 | VWA_3: von Willebrand factor type A domain | 98.15 | |
| cd01480 | 186 | vWA_collagen_alpha_1-VI-type VWA_collagen alpha(VI | 98.13 | |
| cd01450 | 161 | vWFA_subfamily_ECM Von Willebrand factor type A (v | 98.1 | |
| cd01475 | 224 | vWA_Matrilin VWA_Matrilin: In cartilaginous plate, | 98.09 | |
| cd01471 | 186 | vWA_micronemal_protein Micronemal proteins: The To | 98.05 | |
| PTZ00441 | 576 | sporozoite surface protein 2 (SSP2); Provisional | 98.05 | |
| TIGR02442 | 633 | Cob-chelat-sub cobaltochelatase subunit. A number | 97.97 | |
| COG1240 | 261 | ChlD Mg-chelatase subunit ChlD [Coenzyme metabolis | 97.96 | |
| cd01469 | 177 | vWA_integrins_alpha_subunit Integrins are a class | 97.96 | |
| cd01477 | 193 | vWA_F09G8-8_type VWA F09G8.8 type: Von Willebrand | 97.96 | |
| cd01482 | 164 | vWA_collagen_alphaI-XII-like Collagen: The extrace | 97.9 | |
| cd00198 | 161 | vWFA Von Willebrand factor type A (vWA) domain was | 97.9 | |
| TIGR02031 | 589 | BchD-ChlD magnesium chelatase ATPase subunit D. Th | 97.9 | |
| PF00092 | 178 | VWA: von Willebrand factor type A domain; InterPro | 97.88 | |
| smart00327 | 177 | VWA von Willebrand factor (vWF) type A domain. VWA | 97.87 | |
| PRK13406 | 584 | bchD magnesium chelatase subunit D; Provisional | 97.82 | |
| cd01481 | 165 | vWA_collagen_alpha3-VI-like VWA_collagen alpha 3(V | 97.75 | |
| cd01473 | 192 | vWA_CTRP CTRP for CS protein-TRAP-related protein: | 97.74 | |
| cd01476 | 163 | VWA_integrin_invertebrates VWA_integrin (invertebr | 97.6 | |
| cd01464 | 176 | vWA_subfamily VWA subfamily: Von Willebrand factor | 97.52 | |
| PF04056 | 193 | Ssl1: Ssl1-like; InterPro: IPR007198 Ssl1-like pro | 97.33 | |
| cd01458 | 218 | vWA_ku Ku70/Ku80 N-terminal domain. The Ku78 heter | 97.28 | |
| cd01454 | 174 | vWA_norD_type norD type: Denitrifying bacteria con | 97.27 | |
| PHA03247 | 3151 | large tegument protein UL36; Provisional | 97.01 | |
| COG4245 | 207 | TerY Uncharacterized protein encoded in toxicity p | 96.66 | |
| cd01462 | 152 | VWA_YIEM_type VWA YIEM type: Von Willebrand factor | 96.62 | |
| KOG2884 | 259 | consensus 26S proteasome regulatory complex, subun | 96.54 | |
| TIGR00578 | 584 | ku70 ATP-dependent DNA helicase ii, 70 kDa subunit | 96.38 | |
| KOG1924 | 1102 | consensus RhoA GTPase effector DIA/Diaphanous [Sig | 95.88 | |
| KOG1984 | 1007 | consensus Vesicle coat complex COPII, subunit SFB3 | 95.84 | |
| cd01457 | 199 | vWA_ORF176_type VWA ORF176 type: Von Willebrand fa | 95.63 | |
| cd01460 | 266 | vWA_midasin VWA_Midasin: Midasin is a member of th | 95.31 | |
| PF03731 | 224 | Ku_N: Ku70/Ku80 N-terminal alpha/beta domain; Inte | 95.15 | |
| COG5148 | 243 | RPN10 26S proteasome regulatory complex, subunit R | 95.12 | |
| cd01455 | 191 | vWA_F11C1-5a_type Von Willebrand factor type A (vW | 94.67 | |
| TIGR00627 | 279 | tfb4 transcription factor tfb4. This family is bas | 94.57 | |
| PF03850 | 276 | Tfb4: Transcription factor Tfb4; InterPro: IPR0046 | 94.37 | |
| KOG2807 | 378 | consensus RNA polymerase II transcription initiati | 93.35 | |
| COG2425 | 437 | Uncharacterized protein containing a von Willebran | 92.2 | |
| smart00187 | 423 | INB Integrin beta subunits (N-terminal portion of | 91.92 | |
| PF06707 | 205 | DUF1194: Protein of unknown function (DUF1194); In | 89.28 | |
| PRK10997 | 487 | yieM hypothetical protein; Provisional | 89.03 | |
| PF00362 | 426 | Integrin_beta: Integrin, beta chain; InterPro: IPR | 88.93 | |
| KOG2353 | 1104 | consensus L-type voltage-dependent Ca2+ channel, a | 86.02 | |
| KOG2487 | 314 | consensus RNA polymerase II transcription initiati | 80.7 |
| >KOG1984 consensus Vesicle coat complex COPII, subunit SFB3 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-148 Score=1263.92 Aligned_cols=548 Identities=40% Similarity=0.754 Sum_probs=532.4
Q ss_pred CCCCCCCCCCCCCCCCCCCCCC--------------CCCCCCCccccc----cCCCCcEeeecCccCCCHHHHhhcCCCe
Q 003269 277 SIPGSIEPGIDLKSLPRPLDGD--------------VEPSSLAETYPL----NCHSRYLRLTTSAIPNSQSLVSRWHLPL 338 (835)
Q Consensus 277 ~~~~~~dp~~~~~~ip~p~~~~--------------~~pp~~~~~~~~----N~sP~yiR~T~~~iP~t~~l~~~~~LPl 338 (835)
..+.|+|| ++||++.... ..||++||+|.+ ||||||||||+|+||+|.|+++.++|||
T Consensus 236 ~~~~rldp----~~iPs~~qv~~~d~~~~r~~~~~~~~PPl~TTd~~~~DqGN~sPr~mr~T~Y~iP~T~Dl~~as~iPL 311 (1007)
T KOG1984|consen 236 PPPQRLDP----NAIPSPPQVSIEDDSSFRSTDTRAQPPPLVTTDFFIQDQGNCSPRFMRCTMYTIPCTNDLLKASQIPL 311 (1007)
T ss_pred CccccCCh----hhCCCchhcccchhhhhhcCCccCCCCCCcccceEEeccCCCCcchheeecccCCccHhHHHhcCCcc
Confidence 46789999 9999998651 579999999987 9999999999999999999999999999
Q ss_pred EEEEccCCCCCCCCC---------------CCcceeecccceEeeCCceEEEcCCCCCCCCCcccccccCcccccCCCCC
Q 003269 339 GAVVCPLAEPPEGNL---------------FICRTYVNPYVTFTDAGRKWRCNICALLNDVPGDYFAHLDATGRRIDIDQ 403 (835)
Q Consensus 339 givv~Pfa~~~~~e~---------------~rCrAYiNPf~~f~~~G~~W~Cn~C~~~N~vP~~Y~~~ld~~g~R~D~~~ 403 (835)
|+||+|||.+.+.|. +|||||||||++|+++||+|+||||+.+|+++++||+||+++|+|.|+++
T Consensus 312 alvIqPfa~l~p~E~~~~vVd~g~sgPvRC~RCkaYinPFmqF~~~gr~f~Cn~C~~~n~vp~~yf~~L~~~grr~D~~e 391 (1007)
T KOG1984|consen 312 ALVIQPFATLTPNEAPVPVVDLGESGPVRCNRCKAYINPFMQFIDGGRKFICNFCGSKNQVPDDYFNHLGPTGRRVDVEE 391 (1007)
T ss_pred eeEecccccCCcccCCCceecCCCCCCcchhhhhhhcCcceEEecCCceEEecCCCccccCChhhcccCCCccccccccc
Confidence 999999998776553 99999999999999999999999999999999999999999999999999
Q ss_pred CCCccccceEEeccccccCC--CCCCCEEEEEEecchhHHhhchHHHHHHHHHHHHhcCC-CCCCceEEEEEEcCeEEEE
Q 003269 404 RPELTKGSVEFVAPTEYMVR--PPMPPLYFFLIDVSISAIRSGMLEVVAQTIKSCLDELP-GFPRTQIGFITFDSTIHFY 480 (835)
Q Consensus 404 rPEL~~gtVEfvap~eY~~r--~p~pp~yvFvIDvS~~av~sG~l~~~~~sI~~~L~~Lp-~~~rt~VGiITFds~V~fy 480 (835)
||||++|+|||+|+++||++ ++++++|||+||||++++++|++.++|++|+++|+.|+ ++++++|||||||++||||
T Consensus 392 rpEL~~Gt~dfvatk~Y~~~~k~p~ppafvFmIDVSy~Ai~~G~~~a~ce~ik~~l~~lp~~~p~~~Vgivtfd~tvhFf 471 (1007)
T KOG1984|consen 392 RPELCLGTVDFVATKDYCRKTKPPKPPAFVFMIDVSYNAISNGAVKAACEAIKSVLEDLPREEPNIRVGIVTFDKTVHFF 471 (1007)
T ss_pred CchhcccccceeeehhhhhcCCCCCCceEEEEEEeehhhhhcchHHHHHHHHHHHHhhcCccCCceEEEEEEecceeEee
Confidence 99999999999999999998 79999999999999999999999999999999999998 6889999999999999999
Q ss_pred ecCCCCCCCceeeecccccccCCCCCCcccchhhhHHHHHHHHhhCCccccCCCCcccchHHHHHHHHHHHHhc-CCEEE
Q 003269 481 NMKSSLTQPQMMVISDLDDIFVPLPDDLLVNLSESRSVVDTLLDSLPSMFQDNMNVESAFGPALKAAFMVMSRL-GGKLL 559 (835)
Q Consensus 481 nl~~~~~~pqmlVvsDldd~f~Pl~~~lLv~l~esr~~I~~lLd~L~~~~~~~~~~~~alG~AL~aA~~lL~~~-GGkIi 559 (835)
|+++++++++|+||+|+||+|+|+.++|||+..|++..|+.|||+|+.||.+.+.+++|+|+||+||+.+||.+ ||||+
T Consensus 472 nl~s~L~qp~mliVsdv~dvfvPf~~g~~V~~~es~~~i~~lLd~Ip~mf~~sk~pes~~g~alqaa~lalk~~~gGKl~ 551 (1007)
T KOG1984|consen 472 NLSSNLAQPQMLIVSDVDDVFVPFLDGLFVNPNESRKVIELLLDSIPTMFQDSKIPESVFGSALQAAKLALKAADGGKLF 551 (1007)
T ss_pred ccCccccCceEEEeecccccccccccCeeccchHHHHHHHHHHHHhhhhhccCCCCchhHHHHHHHHHHHHhccCCceEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998 99999
Q ss_pred EEecCCCCCCcc-cccccCCcccccCCccccccCCCCcHHHHHHHHHHhhcCeEEEEEEecCCccChhhhhhhccccccE
Q 003269 560 IFQNSLPSLGVG-CLKLRGDDLRVYGTDKEHSLRIPEDPFYKQMAADLTKFQIAVNVYAFSDKYTDIASLGTLAKYTGGQ 638 (835)
Q Consensus 560 vF~sg~Pt~GpG-~L~~re~~~r~~gt~~e~~l~~pa~~FYk~La~~~~~~gIsVDlF~~s~~~vdiatL~~L~~~TGG~ 638 (835)
||++.+||+|.| +|+.|+ +.|+++++||++|+.+++++|++||++|++.|||||||++...|+|+|+|+.+++.|||+
T Consensus 552 vF~s~Lpt~g~g~kl~~r~-D~~l~~t~kek~l~~pq~~~y~~LA~e~v~~g~svDlF~t~~ayvDvAtlg~v~~~TgG~ 630 (1007)
T KOG1984|consen 552 VFHSVLPTAGAGGKLSNRD-DRRLIGTDKEKNLLQPQDKTYTTLAKEFVESGCSVDLFLTPNAYVDVATLGVVPALTGGQ 630 (1007)
T ss_pred EEecccccccCcccccccc-hhhhhcccchhhccCcchhHHHHHHHHHHHhCceEEEEEcccceeeeeeecccccccCce
Confidence 999999999977 777775 489999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeCCCCcchhHHHHHHHHHhhcccccccceEEEEEeCCCceEeeeecCcccCCCCceEeccCCCCCcEEEEEeecccc
Q 003269 639 VYYYPSFQSTTHGERLRHELSRDLTRETAWEAVMRIRCGKGVRFTNYHGNFMLRSTDLLALPAVDCDKAYAMQLSLEETL 718 (835)
Q Consensus 639 v~~y~~F~~~~d~~~L~~dL~r~l~r~~g~~a~mrVR~S~Gl~V~~~~Gnf~~rs~~~~~l~~id~d~Sia~~f~~d~~l 718 (835)
+|+|..|...+|+.+|.+||+|++++++||+|+||||||+||++.+|||||++++++|++|+.+|+||+++++|+|||+|
T Consensus 631 vy~Y~~F~a~~D~~rl~nDL~~~vtk~~gf~a~mrvRtStGirv~~f~Gnf~~~~~tDiela~lD~dkt~~v~fkhDdkL 710 (1007)
T KOG1984|consen 631 VYKYYPFQALTDGPRLLNDLVRNVTKKQGFDAVMRVRTSTGIRVQDFYGNFLMRNPTDIELAALDCDKTLTVEFKHDDKL 710 (1007)
T ss_pred eEEecchhhcccHHHHHHHHHHhcccceeeeeEEEEeecCceeeeeeechhhhcCCCCccccccccCceeEEEEeccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCceeEEEEEEEEEecCCcEEEEEEcCcccccCCHHHHHHhcChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Q 003269 719 LTTQTVYFQVALLYTASCGERRIRVHTLAAPVVSNLSDMYQQADTGAIVSVFSRLAIEKTLSHKLEDARNAVQLRLVKAL 798 (835)
Q Consensus 719 ~~~~~~~IQ~AllYT~~~GeRRIRV~Tl~lpvts~l~~vf~s~D~eai~~llaK~a~~~~~~~~l~d~R~~l~~~lv~iL 798 (835)
+++..++||+|+|||+.+|||||||+|++++||++++|+||++|.|+++++|+|.|+..+.++.++++|+.|+++|++||
T Consensus 711 q~~s~~~fQ~AlLYTti~G~RR~Rv~Nlsl~~ts~l~~lyr~~~~d~l~a~maK~a~~~i~~~~lk~vre~l~~~~~~iL 790 (1007)
T KOG1984|consen 711 QDGSDVHFQTALLYTTIDGQRRLRVLNLSLAVTSQLSELYRSADTDPLIAIMAKQAAKAILDKPLKEVREQLVSQCAQIL 790 (1007)
T ss_pred cCCcceeEEEEEEEeccCCceeEEEEecchhhhhhHHHHHHhcCccHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhhhccCCCCCceecCcccchhhHHHhc
Q 003269 799 KEYRNLYAVQHRLGSRMIYPESLKFLPFRLHD 830 (835)
Q Consensus 799 ~~YRk~~~a~~~~~gqLiLPeslKlLPly~l~ 830 (835)
++||| +|++.+++|||||||+|||||||+|+
T Consensus 791 ~~YRk-~cas~~ssgQLILPeslKLlPly~la 821 (1007)
T KOG1984|consen 791 ASYRK-NCASPASSGQLILPESLKLLPLYMLA 821 (1007)
T ss_pred HHHHH-hhcCCCCcccEechhhhHHHHHHHHH
Confidence 99999 99999999999999999999999984
|
|
| >KOG1985 consensus Vesicle coat complex COPII, subunit SEC24/subunit SFB2 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
| >COG5028 Vesicle coat complex COPII, subunit SEC24/subunit SFB2/subunit SFB3 [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
| >PTZ00395 Sec24-related protein; Provisional | Back alignment and domain information |
|---|
| >PLN00162 transport protein sec23; Provisional | Back alignment and domain information |
|---|
| >KOG1986 consensus Vesicle coat complex COPII, subunit SEC23 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
| >COG5047 SEC23 Vesicle coat complex COPII, subunit SEC23 [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
| >cd01479 Sec24-like Sec24-like: Protein and membrane traffic in eukaryotes is mediated by at least in part by the budding and fusion of intracellular transport vesicles that selectively carry cargo proteins and lipids from donor to acceptor organelles | Back alignment and domain information |
|---|
| >cd01468 trunk_domain trunk domain | Back alignment and domain information |
|---|
| >PF04811 Sec23_trunk: Sec23/Sec24 trunk domain; InterPro: IPR006896 COPII (coat protein complex II)-coated vesicles carry proteins from the endoplasmic reticulum (ER) to the Golgi complex [] | Back alignment and domain information |
|---|
| >cd01478 Sec23-like Sec23-like: Protein and membrane traffic in eukaryotes is mediated by at least in part by the budding and fusion of intracellular transport vesicles that selectively carry cargo proteins and lipids from donor to acceptor organelles | Back alignment and domain information |
|---|
| >PF08033 Sec23_BS: Sec23/Sec24 beta-sandwich domain; InterPro: IPR012990 COPII (coat protein complex II)-coated vesicles carry proteins from the endoplasmic reticulum (ER) to the Golgi complex [] | Back alignment and domain information |
|---|
| >PF04815 Sec23_helical: Sec23/Sec24 helical domain; InterPro: IPR006900 COPII (coat protein complex II)-coated vesicles carry proteins from the endoplasmic reticulum (ER) to the Golgi complex [] | Back alignment and domain information |
|---|
| >PF04810 zf-Sec23_Sec24: Sec23/Sec24 zinc finger; InterPro: IPR006895 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule | Back alignment and domain information |
|---|
| >PRK13685 hypothetical protein; Provisional | Back alignment and domain information |
|---|
| >cd01453 vWA_transcription_factor_IIH_type Transcription factors IIH type: TFIIH is a multiprotein complex that is one of the five general transcription factors that binds RNA polymerase II holoenzyme | Back alignment and domain information |
|---|
| >cd01467 vWA_BatA_type VWA BatA type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF) | Back alignment and domain information |
|---|
| >cd01465 vWA_subgroup VWA subgroup: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF) | Back alignment and domain information |
|---|
| >cd01451 vWA_Magnesium_chelatase Magnesium chelatase: Mg-chelatase catalyses the insertion of Mg into protoporphyrin IX (Proto) | Back alignment and domain information |
|---|
| >cd01466 vWA_C3HC4_type VWA C3HC4-type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF) | Back alignment and domain information |
|---|
| >cd01456 vWA_ywmD_type VWA ywmD type:Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF) | Back alignment and domain information |
|---|
| >cd01463 vWA_VGCC_like VWA Voltage gated Calcium channel like: Voltage-gated calcium channels are a complex of five proteins: alpha 1, beta 1, gamma, alpha 2 and delta | Back alignment and domain information |
|---|
| >TIGR00868 hCaCC calcium-activated chloride channel protein 1 | Back alignment and domain information |
|---|
| >cd01474 vWA_ATR ATR (Anthrax Toxin Receptor): Anthrax toxin is a key virulence factor for Bacillus anthracis, the causative agent of anthrax | Back alignment and domain information |
|---|
| >PF13519 VWA_2: von Willebrand factor type A domain; PDB: 3IBS_B 3RAG_B 2X5N_A | Back alignment and domain information |
|---|
| >TIGR03788 marine_srt_targ marine proteobacterial sortase target protein | Back alignment and domain information |
|---|
| >TIGR03436 acidobact_VWFA VWFA-related Acidobacterial domain | Back alignment and domain information |
|---|
| >cd01470 vWA_complement_factors Complement factors B and C2 are two critical proteases for complement activation | Back alignment and domain information |
|---|
| >cd01472 vWA_collagen von Willebrand factor (vWF) type A domain; equivalent to the I-domain of integrins | Back alignment and domain information |
|---|
| >cd01461 vWA_interalpha_trypsin_inhibitor vWA_interalpha trypsin inhibitor (ITI): ITI is a glycoprotein composed of three polypeptides- two heavy chains and one light chain (bikunin) | Back alignment and domain information |
|---|
| >cd01452 VWA_26S_proteasome_subunit 26S proteasome plays a major role in eukaryotic protein breakdown, especially for ubiquitin-tagged proteins | Back alignment and domain information |
|---|
| >PF13768 VWA_3: von Willebrand factor type A domain | Back alignment and domain information |
|---|
| >cd01480 vWA_collagen_alpha_1-VI-type VWA_collagen alpha(VI) type: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions | Back alignment and domain information |
|---|
| >cd01450 vWFA_subfamily_ECM Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF) | Back alignment and domain information |
|---|
| >cd01475 vWA_Matrilin VWA_Matrilin: In cartilaginous plate, extracellular matrix molecules mediate cell-matrix and matrix-matrix interactions thereby providing tissue integrity | Back alignment and domain information |
|---|
| >cd01471 vWA_micronemal_protein Micronemal proteins: The Toxoplasma lytic cycle begins when the parasite actively invades a target cell | Back alignment and domain information |
|---|
| >PTZ00441 sporozoite surface protein 2 (SSP2); Provisional | Back alignment and domain information |
|---|
| >TIGR02442 Cob-chelat-sub cobaltochelatase subunit | Back alignment and domain information |
|---|
| >COG1240 ChlD Mg-chelatase subunit ChlD [Coenzyme metabolism] | Back alignment and domain information |
|---|
| >cd01469 vWA_integrins_alpha_subunit Integrins are a class of adhesion receptors that link the extracellular matrix to the cytoskeleton and cooperate with growth factor receptors to promote celll survival, cell cycle progression and cell migration | Back alignment and domain information |
|---|
| >cd01477 vWA_F09G8-8_type VWA F09G8 | Back alignment and domain information |
|---|
| >cd01482 vWA_collagen_alphaI-XII-like Collagen: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions | Back alignment and domain information |
|---|
| >cd00198 vWFA Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF) | Back alignment and domain information |
|---|
| >TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D | Back alignment and domain information |
|---|
| >PF00092 VWA: von Willebrand factor type A domain; InterPro: IPR002035 The von Willebrand factor is a large multimeric glycoprotein found in blood plasma | Back alignment and domain information |
|---|
| >smart00327 VWA von Willebrand factor (vWF) type A domain | Back alignment and domain information |
|---|
| >PRK13406 bchD magnesium chelatase subunit D; Provisional | Back alignment and domain information |
|---|
| >cd01481 vWA_collagen_alpha3-VI-like VWA_collagen alpha 3(VI) like: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions | Back alignment and domain information |
|---|
| >cd01473 vWA_CTRP CTRP for CS protein-TRAP-related protein: Adhesion of Plasmodium to host cells is an important phenomenon in parasite invasion and in malaria associated pathology | Back alignment and domain information |
|---|
| >cd01476 VWA_integrin_invertebrates VWA_integrin (invertebrates): Integrins are a family of cell surface receptors that have diverse functions in cell-cell and cell-extracellular matrix interactions | Back alignment and domain information |
|---|
| >cd01464 vWA_subfamily VWA subfamily: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF) | Back alignment and domain information |
|---|
| >PF04056 Ssl1: Ssl1-like; InterPro: IPR007198 Ssl1-like proteins are 40 kDa subunits of the transcription factor II H complex | Back alignment and domain information |
|---|
| >cd01458 vWA_ku Ku70/Ku80 N-terminal domain | Back alignment and domain information |
|---|
| >cd01454 vWA_norD_type norD type: Denitrifying bacteria contain both membrane bound and periplasmic nitrate reductases | Back alignment and domain information |
|---|
| >PHA03247 large tegument protein UL36; Provisional | Back alignment and domain information |
|---|
| >COG4245 TerY Uncharacterized protein encoded in toxicity protection region of plasmid R478, contains von Willebrand factor (vWF) domain [General function prediction only] | Back alignment and domain information |
|---|
| >cd01462 VWA_YIEM_type VWA YIEM type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF) | Back alignment and domain information |
|---|
| >KOG2884 consensus 26S proteasome regulatory complex, subunit RPN10/PSMD4 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >TIGR00578 ku70 ATP-dependent DNA helicase ii, 70 kDa subunit (ku70) | Back alignment and domain information |
|---|
| >KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton] | Back alignment and domain information |
|---|
| >KOG1984 consensus Vesicle coat complex COPII, subunit SFB3 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
| >cd01457 vWA_ORF176_type VWA ORF176 type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF) | Back alignment and domain information |
|---|
| >cd01460 vWA_midasin VWA_Midasin: Midasin is a member of the AAA ATPase family | Back alignment and domain information |
|---|
| >PF03731 Ku_N: Ku70/Ku80 N-terminal alpha/beta domain; InterPro: IPR005161 The Ku heterodimer (composed of Ku70 P12956 from SWISSPROT and Ku80 P13010 from SWISSPROT) contributes to genomic integrity through its ability to bind DNA double-strand breaks and facilitate repair by the non-homologous end-joining pathway | Back alignment and domain information |
|---|
| >COG5148 RPN10 26S proteasome regulatory complex, subunit RPN10/PSMD4 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >cd01455 vWA_F11C1-5a_type Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF) | Back alignment and domain information |
|---|
| >TIGR00627 tfb4 transcription factor tfb4 | Back alignment and domain information |
|---|
| >PF03850 Tfb4: Transcription factor Tfb4; InterPro: IPR004600 Members of this family are part of the TFIIH complex which is involved in the initiation of transcription and nucleotide excision repair | Back alignment and domain information |
|---|
| >KOG2807 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit SSL1 [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
| >COG2425 Uncharacterized protein containing a von Willebrand factor type A (vWA) domain [General function prediction only] | Back alignment and domain information |
|---|
| >smart00187 INB Integrin beta subunits (N-terminal portion of extracellular region) | Back alignment and domain information |
|---|
| >PF06707 DUF1194: Protein of unknown function (DUF1194); InterPro: IPR010607 This family consists of several hypothetical Rhizobiales specific proteins of around 270 residues in length | Back alignment and domain information |
|---|
| >PRK10997 yieM hypothetical protein; Provisional | Back alignment and domain information |
|---|
| >PF00362 Integrin_beta: Integrin, beta chain; InterPro: IPR002369 Integrins are the major metazoan receptors for cell adhesion to extracellular matrix proteins and, in vertebrates, also play important roles in certain cell-cell adhesions, make transmembrane connections to the cytoskeleton and activate many intracellular signalling pathways [, ] | Back alignment and domain information |
|---|
| >KOG2353 consensus L-type voltage-dependent Ca2+ channel, alpha2/delta subunit [Inorganic ion transport and metabolism; Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >KOG2487 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB4 [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 835 | ||||
| 3egd_B | 748 | Crystal Structure Of The Mammalian Copii-Coat Prote | 1e-128 | ||
| 2nup_B | 753 | Crystal Structure Of The Human Sec23a24A HETERODIME | 1e-128 | ||
| 3eh1_A | 751 | Crystal Structure Of The Human Copii-Coat Protein S | 1e-126 | ||
| 3eh2_A | 766 | Crystal Structure Of The Human Copii-Coat Protein S | 1e-101 | ||
| 3efo_B | 770 | Crystal Structure Of The Mammalian Copii-Coat Prote | 4e-98 | ||
| 1m2v_B | 926 | Crystal Structure Of The Yeast Sec2324 HETERODIMER | 9e-89 | ||
| 1pcx_A | 810 | Crystal Structure Of The Copii Coat Subunit, Sec24, | 2e-88 | ||
| 2qtv_A | 772 | Structure Of Sec23-Sar1 Complexed With The Active F | 2e-08 | ||
| 1m2o_A | 768 | Crystal Structure Of The Sec23-Sar1 Complex Length | 2e-08 | ||
| 2nup_A | 769 | Crystal Structure Of The Human Sec23a24A HETERODIME | 4e-07 | ||
| 3eg9_A | 764 | Crystal Structure Of The Mammalian Copii-Coat Prote | 1e-06 | ||
| 3efo_A | 765 | Crystal Structure Of The Mammalian Copii-Coat Prote | 1e-06 |
| >pdb|3EGD|B Chain B, Crystal Structure Of The Mammalian Copii-Coat Protein Sec23a24A COMPLEXED WITH THE SNARE PROTEIN SEC22 AND BOUND To The Transport Signal Sequence Of Vesicular Stomatitis Virus Glycoprotein Length = 748 | Back alignment and structure |
|
| >pdb|2NUP|B Chain B, Crystal Structure Of The Human Sec23a24A HETERODIMER, Complexed With The Snare Protein Sec22b Length = 753 | Back alignment and structure |
| >pdb|3EH1|A Chain A, Crystal Structure Of The Human Copii-Coat Protein Sec24b Length = 751 | Back alignment and structure |
| >pdb|3EH2|A Chain A, Crystal Structure Of The Human Copii-Coat Protein Sec24c Length = 766 | Back alignment and structure |
| >pdb|3EFO|B Chain B, Crystal Structure Of The Mammalian Copii-Coat Protein Sec2324 BOUND TO THE TRANSPORT SIGNAL SEQUENCE OF SYNTAXIN 5 Length = 770 | Back alignment and structure |
| >pdb|1M2V|B Chain B, Crystal Structure Of The Yeast Sec2324 HETERODIMER Length = 926 | Back alignment and structure |
| >pdb|1PCX|A Chain A, Crystal Structure Of The Copii Coat Subunit, Sec24, Complexed With A Peptide From The Snare Protein Bet1 Length = 810 | Back alignment and structure |
| >pdb|2QTV|A Chain A, Structure Of Sec23-Sar1 Complexed With The Active Fragment Of Sec31 Length = 772 | Back alignment and structure |
| >pdb|1M2O|A Chain A, Crystal Structure Of The Sec23-Sar1 Complex Length = 768 | Back alignment and structure |
| >pdb|2NUP|A Chain A, Crystal Structure Of The Human Sec23a24A HETERODIMER, Complexed With The Snare Protein Sec22b Length = 769 | Back alignment and structure |
| >pdb|3EG9|A Chain A, Crystal Structure Of The Mammalian Copii-Coat Protein Sec2324 BOUND TO THE TRANSPORT SIGNAL SEQUENCE OF MEMBRIN Length = 764 | Back alignment and structure |
| >pdb|3EFO|A Chain A, Crystal Structure Of The Mammalian Copii-Coat Protein Sec2324 BOUND TO THE TRANSPORT SIGNAL SEQUENCE OF SYNTAXIN 5 Length = 765 | Back alignment and structure |
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926 | Back alignment and structure |
|---|
Score = 528 bits (1360), Expect = e-175
Identities = 212/760 (27%), Positives = 343/760 (45%), Gaps = 73/760 (9%)
Query: 97 TSGPFQRFPTPQFPPVAQAPPVRGPPVGLPPVSHPIGQVPNPPVPLRAQPPPVPMGSPVQ 156
+ + +P Q A P++ P +PP Q P Q P G+
Sbjct: 2 SHHKKRVYPQAQLQYGQNATPLQQPAQFMPP------QDPAAAGMSYGQMGMPPQGAV-- 53
Query: 157 RANFAPSGVNVPQPLSDSSFSASRPNSPPDSSYPFARPTPQQPLPGYVTTQPNAVSQGPT 216
P F P +Q + Q T
Sbjct: 54 ---------------------------PSMGQQQFLTPAQEQL--------HQQIDQATT 78
Query: 217 MPSSFPSHPRSYVPPPPTSASSFPAHQGGYVPPGVQSQHS---GPPVGVIQGLAEDFSSL 273
+ H V P P G + Q + G P + + L
Sbjct: 79 SMNDMHLHNVPLVDPNAYMQPQVPVQMGTPLQQQQQPMAAPAYGQPSAAMGQNMRPMNQL 138
Query: 274 SFGSIPGSIEPGIDLKSLPRPLDGDVEPSSLAETYPLNCHSRYLRLTTSAIPNSQSLVSR 333
+ + P I +LP P L + N Y+R T +A+P + SL+ +
Sbjct: 139 YPIDLLTELPPPITDLTLPPPPLVIPPERMLVPSELSNASPDYIRSTLNAVPKNSSLLKK 198
Query: 334 WHLPLGAVVCPLAEPPEGNLFI-------------CRTYVNPYVTFTDAGRKWRCNICAL 380
LP G V+ P + CR+Y+NP+VTF + GR+WRCN C L
Sbjct: 199 SKLPFGLVIRPYQHLYDDIDPPPLNEDGLIVRCRRCRSYMNPFVTFIEQGRRWRCNFCRL 258
Query: 381 LNDVPGDYFAHLDATGRRIDIDQRPELTKGSVEFVAPTEYMVRPPMPPLYFFLIDVSISA 440
NDVP + R E+ +E++AP EY +R P P Y FLIDVS S+
Sbjct: 259 ANDVPMQMDQSDPNDPK--SRYDRNEIKCAVMEYMAPKEYTLRQPPPATYCFLIDVSQSS 316
Query: 441 IRSGMLEVVAQTIKSCLDELPGF-PRTQIGFITFDSTIHFYNMK-------SSLTQPQMM 492
I+SG+L T+ LD +P RT+I + D+ IH++ + S Q MM
Sbjct: 317 IKSGLLATTINTLLQNLDSIPNHDERTRISILCVDNAIHYFKIPLDSENNEESADQINMM 376
Query: 493 VISDLDDIFVPLPDDLLVNLSESRSVVDTLLDSLPSMFQDNMNVESAFGPALKAAFMVMS 552
I+DL++ F+P P+ ++V+L R ++TLL +P +FQ N+ A GPALK+A+ ++
Sbjct: 377 DIADLEEPFLPRPNSMVVSLKACRQNIETLLTKIPQIFQSNLITNFALGPALKSAYHLIG 436
Query: 553 RLGGKLLIFQNSLPSLGVGCLKLRGDDLRVYGTDKEHSLRIPEDPFYKQMAADLTKFQIA 612
+GGK+++ +LP+LG+G L+ R + V + + L +D FYK D +K QI
Sbjct: 437 GVGGKIIVVSGTLPNLGIGKLQRRNESGVVNTSKETAQLLSCQDSFYKNFTIDCSKVQIT 496
Query: 613 VNVYAFSDKYTDIASLGTLAKYTGGQVYYYPSFQSTTH--GERLRHELSRDLTRETAWEA 670
V+++ S+ Y D+ASL L+++T GQ ++YP F + E ++ ++ + E
Sbjct: 497 VDLFLASEDYMDVASLSNLSRFTAGQTHFYPGFSGKNPNDIVKFSTEFAKHISMDFCMET 556
Query: 671 VMRIRCGKGVRFTNYHGNFMLRSTDLLALPAVDCDKAYAMQLSLEETLLTTQTVYFQVAL 730
VMR R G+R + ++G+F RS+DL A + D++Y +++++E+ + Y QVA+
Sbjct: 557 VMRARGSTGLRMSRFYGHFFNRSSDLCAFSTMPRDQSYLFEVNVDES-IMADYCYVQVAV 615
Query: 731 LYTASCGERRIRVHTLAAPVVSNLSDMYQQADTGAIVSVFSRLAIEKTLSHKLEDARNAV 790
L + + +RRIR+ TLA P +L+++Y AD AI S ++ A+EK L+ L+DAR +
Sbjct: 616 LLSLNNSQRRIRIITLAMPTTESLAEVYASADQLAIASFYNSKAVEKALNSSLDDARVLI 675
Query: 791 QLRLVKALKEYRNLYAVQHRLGSRM-IYPESLKFLPFRLH 829
+ L Y+ V + G +L+ P +H
Sbjct: 676 NKSVQDILATYKKEIVVSNTAGGAPLRLCANLRMFPLLMH 715
|
| >1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926 | Back alignment and structure |
|---|
| >3efo_B SEC24 related gene family, member D; copii, coat protein, transport signal, disease mutation, endoplasmic reticulum, ER-golgi transport, golgi apparatus, membrane; 2.70A {Homo sapiens} PDB: 3eg9_B Length = 770 | Back alignment and structure |
|---|
| >3eh2_A Protein transport protein SEC24C; copii-coat protein, vesicle transport, cytoplasm, endoplasmic reticulum, ER-golgi transport, golgi apparatus; 2.35A {Homo sapiens} Length = 766 | Back alignment and structure |
|---|
| >3eh1_A Protein transport protein SEC24B; copii coat protein, vesicle transport, transport signal sequence, cytoplasm, endoplasmic reticulum; 1.80A {Homo sapiens} PDB: 2nut_B 2nup_B 3egd_B 3egx_B Length = 751 | Back alignment and structure |
|---|
| >1pcx_A Protein transport protein SEC24; 2.50A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 PDB: 1pd0_A 1pd1_A Length = 810 | Back alignment and structure |
|---|
| >2nut_A Protein transport protein SEC23A; human copii SEC23/24 complexed with SEC22, protein transport; 2.30A {Homo sapiens} PDB: 2nup_A 3egd_A 3eg9_A 3egx_A 3efo_A Length = 769 | Back alignment and structure |
|---|
| >1m2o_A SEC23, protein transport protein SEC23, SEC23P; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 PDB: 1m2v_A 2qtv_A* Length = 768 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1twf_A B220, DNA-directed RNA polymerase II largest subunit; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: e.29.1.2 PDB: 1i3q_A 1i6h_A 1k83_A* 1nik_A 1nt9_A 1pqv_A 1r5u_A 1r9s_A* 1r9t_A* 1sfo_A* 1twa_A* 1twc_A* 1i50_A* 1twg_A* 1twh_A* 1wcm_A 1y1v_A 1y1w_A 1y1y_A 1y77_A* ... Length = 1733 | Back alignment and structure |
|---|
| >1twf_A B220, DNA-directed RNA polymerase II largest subunit; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: e.29.1.2 PDB: 1i3q_A 1i6h_A 1k83_A* 1nik_A 1nt9_A 1pqv_A 1r5u_A 1r9s_A* 1r9t_A* 1sfo_A* 1twa_A* 1twc_A* 1i50_A* 1twg_A* 1twh_A* 1wcm_A 1y1v_A 1y1w_A 1y1y_A 1y77_A* ... Length = 1733 | Back alignment and structure |
|---|
| >1twf_A B220, DNA-directed RNA polymerase II largest subunit; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: e.29.1.2 PDB: 1i3q_A 1i6h_A 1k83_A* 1nik_A 1nt9_A 1pqv_A 1r5u_A 1r9s_A* 1r9t_A* 1sfo_A* 1twa_A* 1twc_A* 1i50_A* 1twg_A* 1twh_A* 1wcm_A 1y1v_A 1y1w_A 1y1y_A 1y77_A* ... Length = 1733 | Back alignment and structure |
|---|
| >3h0g_A DNA-directed RNA polymerase II subunit RPB1; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe} Length = 1752 | Back alignment and structure |
|---|
| >3h0g_A DNA-directed RNA polymerase II subunit RPB1; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe} Length = 1752 | Back alignment and structure |
|---|
| >3h0g_A DNA-directed RNA polymerase II subunit RPB1; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe} Length = 1752 | Back alignment and structure |
|---|
| >2yrc_A Protein transport protein SEC23A; zinc binding, copii, coat protein complex-II, endoplasmic reticulum, golgi, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2yrd_A Length = 59 | Back alignment and structure |
|---|
| >3pgw_B SM B; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_A Length = 231 | Back alignment and structure |
|---|
| >3pgw_B SM B; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_A Length = 231 | Back alignment and structure |
|---|
| >3pgw_B SM B; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_A Length = 231 | Back alignment and structure |
|---|
| >3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid cyclase fold, DDXXXXD motif, NDXXSXXXE MOT methylisoborneol biosynthesis; HET: GST; 1.80A {Streptomyces coelicolor} PDB: 3v1x_A* Length = 433 | Back alignment and structure |
|---|
| >3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid cyclase fold, DDXXXXD motif, NDXXSXXXE MOT methylisoborneol biosynthesis; HET: GST; 1.80A {Streptomyces coelicolor} PDB: 3v1x_A* Length = 433 | Back alignment and structure |
|---|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 835 | |||
| 3efo_B | 770 | SEC24 related gene family, member D; copii, coat p | 100.0 | |
| 3eh2_A | 766 | Protein transport protein SEC24C; copii-coat prote | 100.0 | |
| 3eh1_A | 751 | Protein transport protein SEC24B; copii coat prote | 100.0 | |
| 1m2v_B | 926 | SEC24, protein transport protein SEC24, SEC24P, SE | 100.0 | |
| 1pcx_A | 810 | Protein transport protein SEC24; 2.50A {Saccharomy | 100.0 | |
| 1m2o_A | 768 | SEC23, protein transport protein SEC23, SEC23P; zi | 100.0 | |
| 2nut_A | 769 | Protein transport protein SEC23A; human copii SEC2 | 100.0 | |
| 4fx5_A | 464 | VON willebrand factor type A; structural genomics, | 99.37 | |
| 2yrc_A | 59 | Protein transport protein SEC23A; zinc binding, co | 99.2 | |
| 3ibs_A | 218 | Conserved hypothetical protein BATB; structural ge | 98.87 | |
| 3n2n_F | 185 | Anthrax toxin receptor 1; rossmann fold; 1.80A {Ho | 98.57 | |
| 1shu_X | 182 | Anthrax toxin receptor 2; alpha/beta rossmann fold | 98.55 | |
| 1atz_A | 189 | VON willebrand factor; collagen-binding, hemostasi | 98.53 | |
| 4hqf_A | 281 | Thrombospondin-related anonymous protein, trap; ma | 98.52 | |
| 1q0p_A | 223 | Complement factor B; VON willebrand factor, MAC-1, | 98.51 | |
| 1ijb_A | 202 | VON willebrand factor; dinucleotide-binding fold, | 98.49 | |
| 4b4t_W | 268 | RPN10, 26S proteasome regulatory subunit RPN10; hy | 98.48 | |
| 4hqo_A | 266 | Sporozoite surface protein 2; malaria, gliding mot | 98.46 | |
| 2b2x_A | 223 | Integrin alpha-1; computational design, antibody-a | 98.41 | |
| 2odp_A | 509 | Complement C2; C3/C5 convertase, complement serin | 98.38 | |
| 1v7p_C | 200 | Integrin alpha-2; snake venom, C-type lectin, anta | 98.37 | |
| 1n3y_A | 198 | Integrin alpha-X; alpha/beta rossmann fold, cell a | 98.36 | |
| 1mf7_A | 194 | Integrin alpha M; cell adhesion; 1.25A {Homo sapie | 98.35 | |
| 2x31_A | 189 | Magnesium-chelatase 60 kDa subunit; ligase, bacter | 98.32 | |
| 1rrk_A | 497 | Complement factor B; BB, hydrolase; 2.00A {Homo sa | 98.32 | |
| 1pt6_A | 213 | Integrin alpha-1; cell adhesion; 1.87A {Homo sapie | 98.27 | |
| 2x5n_A | 192 | SPRPN10, 26S proteasome regulatory subunit RPN10; | 98.19 | |
| 1mjn_A | 179 | Integrin alpha-L; rossmann fold, immune system; 1. | 98.09 | |
| 3hrz_D | 741 | Complement factor B; serine protease, glycosilated | 98.09 | |
| 1jey_B | 565 | KU80; double-strand DNA break repair, non-homologo | 97.97 | |
| 3zqk_A | 199 | VON willebrand factor; blood clotting, adamts-13, | 97.86 | |
| 2xgg_A | 178 | Microneme protein 2; A/I domain, cell adhesion, hy | 97.75 | |
| 3k6s_A | 1095 | Integrin alpha-X; cell receptor, adhesion molecule | 97.54 | |
| 1jey_A | 609 | KU70; double-strand DNA break repair, non-homologo | 96.9 | |
| 2ww8_A | 893 | RRGA, cell WALL surface anchor family protein; IGG | 96.7 | |
| 3fcs_B | 690 | Integrin beta-3; beta propeller, rossmann fold, EG | 96.64 | |
| 3t3p_B | 472 | Integrin beta-3; integrin, cell adhesion, blood cl | 96.19 | |
| 3vi3_B | 454 | Integrin beta-1; beta propeller fold, rossman fold | 95.91 | |
| 3rag_A | 242 | Uncharacterized protein; structural genomics, PSI- | 95.87 | |
| 3k6s_B | 687 | Integrin beta-2; cell receptor, adhesion molecule, | 95.72 | |
| 3v4v_B | 503 | Integrin beta-7; cell adhesion, madcam-1, membrane | 95.59 | |
| 1yvr_A | 538 | RO autoantigen, 60-kDa SS-A/RO ribonucleoprotein, | 95.42 | |
| 2iue_A | 212 | Pactolus I-domain; membrane protein, CD, ITC, limb | 91.96 | |
| 2nvo_A | 535 | RO sixty-related protein, RSR; alpha helical repea | 90.74 |
| >3efo_B SEC24 related gene family, member D; copii, coat protein, transport signal, disease mutation, endoplasmic reticulum, ER-golgi transport, golgi apparatus, membrane; 2.70A {Homo sapiens} PDB: 3eg9_B | Back alignment and structure |
|---|
Probab=100.00 E-value=6.6e-127 Score=1146.90 Aligned_cols=530 Identities=35% Similarity=0.685 Sum_probs=509.6
Q ss_pred CCCCCCCccccc----cCCCCcEeeecCccCCCHHHHhhcCCCeEEEEccCCCCCCCC------------C---CCccee
Q 003269 299 VEPSSLAETYPL----NCHSRYLRLTTSAIPNSQSLVSRWHLPLGAVVCPLAEPPEGN------------L---FICRTY 359 (835)
Q Consensus 299 ~~pp~~~~~~~~----N~sP~yiR~T~~~iP~t~~l~~~~~LPlgivv~Pfa~~~~~e------------~---~rCrAY 359 (835)
.+||+++++|++ ||+|+|||+|||+||.|++++++++||||++|+||++..+.| . +|||||
T Consensus 28 ~~pp~~~~~~~~~d~gn~~p~~~R~T~n~iP~t~~l~~~~~lPlg~~i~Pl~~~~~~e~p~pvv~~~~~~pvRC~rCray 107 (770)
T 3efo_B 28 QIPPLVTTDCMIQDQGNASPRFIRCTTYCFPCTSDMAKQAQIPLAAVIKPFATIPSNESPLYLVNHGESGPVRCNRCKAY 107 (770)
T ss_dssp CCCCCTTSCCEEECSSSCCTTTEEESBSEEESSHHHHHHHCCCCEEEECTTCCCCTTSCCCCEECCTTTCSCBCTTTCCB
T ss_pred CCCCCCCCceeeeecCCCCCCeEEeecccCCCCHHHHHhCCCCeEEEEEcCCCCCcccCCCCcccCCCCCCCccCCCCCC
Confidence 478999999987 999999999999999999999999999999999999865422 1 899999
Q ss_pred ecccceEeeCCceEEEcCCCCCCCCCcccccccCcccccCCCCCCCCccccceEEecccccc--CCCCCCCEEEEEEecc
Q 003269 360 VNPYVTFTDAGRKWRCNICALLNDVPGDYFAHLDATGRRIDIDQRPELTKGSVEFVAPTEYM--VRPPMPPLYFFLIDVS 437 (835)
Q Consensus 360 iNPf~~f~~~G~~W~Cn~C~~~N~vP~~Y~~~ld~~g~R~D~~~rPEL~~gtVEfvap~eY~--~r~p~pp~yvFvIDvS 437 (835)
|||||+|+++|++|+||||+..|++|.+|+++++++|+|.|+++||||++|+|||++|+||+ .|+++||+||||||||
T Consensus 108 iNPf~~f~~~g~~w~Cn~C~~~N~~P~~Y~~~l~~~g~r~d~~~rpEL~~~tvEf~ap~eY~~~~~~p~pp~y~FvIDvs 187 (770)
T 3efo_B 108 MCPFMQFIEGGRRYQCGFCNCVNDVPPFYFQHLDHIGRRLDHYEKPELSLGSYEYVATLDYCRKSKPPNPPAFIFMIDVS 187 (770)
T ss_dssp SCTTCEEEGGGTEEECTTTCCEEECCGGGCCCCCSSSCTTTGGGSHHHHCSEEEEECCGGGSGGGSCCCCCEEEEEEECS
T ss_pred cCCceEEecCCCEEEeccccccCCCchHhhccccccccccccccCcccccCceeeecCHHHhccCCCCCCcEEEEEEEcc
Confidence 99999999999999999999999999999999999999999999999999999999999999 5899999999999999
Q ss_pred hhHHhhchHHHHHHHHHHHHhcCCCC-----CCceEEEEEEcCeEEEEecCCCCCCCceeeecccccccCCCCCCcccch
Q 003269 438 ISAIRSGMLEVVAQTIKSCLDELPGF-----PRTQIGFITFDSTIHFYNMKSSLTQPQMMVISDLDDIFVPLPDDLLVNL 512 (835)
Q Consensus 438 ~~av~sG~l~~~~~sI~~~L~~Lp~~-----~rt~VGiITFds~V~fynl~~~~~~pqmlVvsDldd~f~Pl~~~lLv~l 512 (835)
.+++++|+++++|++|+++|+.||++ +|++|||||||++||||||++.+++++|+||+|++|+|+|++++|||++
T Consensus 188 ~~av~sg~l~~~~~sl~~~L~~lP~~~~~~~~~~~VG~ITfd~~vh~y~l~~~~~q~q~~vv~d~~d~f~P~~~~~Lv~l 267 (770)
T 3efo_B 188 YSNIKNGLVKLICEELKTMLEKIPKEEQEETSAIRVGFITYNKVLHFFNVKSNLAQPQMMVVTDVGEVFVPLLDGFLVNY 267 (770)
T ss_dssp HHHHHTTHHHHHHHHHHHHGGGCCCCTTSSSCSCEEEEEEESSSEEEEECCTTCSSCEEEEECCTTSCCCCCSSSSSBCT
T ss_pred hhhccchHHHHHHHHHHHHHHhCCccccccCccceEEEEEeCCEEEEEeCCCcccCceEEEecccccccCCCccceeeeH
Confidence 99999999999999999999999964 3689999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHhhCCccccCCCCcccchHHHHHHHHHHHHh--cCCEEEEEecCCCC-CCcccccccCCcccccCCcccc
Q 003269 513 SESRSVVDTLLDSLPSMFQDNMNVESAFGPALKAAFMVMSR--LGGKLLIFQNSLPS-LGVGCLKLRGDDLRVYGTDKEH 589 (835)
Q Consensus 513 ~esr~~I~~lLd~L~~~~~~~~~~~~alG~AL~aA~~lL~~--~GGkIivF~sg~Pt-~GpG~L~~re~~~r~~gt~~e~ 589 (835)
+||++.|+++||+|+.+|.+++..++|+|+||++|+++|+. +||||++|++|+|+ +|||+|+.|++ .+..+++||+
T Consensus 268 ~e~~~~i~~lL~~L~~~~~~~~~~~t~~g~al~aa~~~l~~~~~GGkI~~F~s~lP~t~GpG~l~~r~~-~~~~~t~ke~ 346 (770)
T 3efo_B 268 QESQSVIHNLLDQIPDMFADSNENETVFAPVIQAGMEALKAADCPGKLFIFHSSLPTAEAPGKLKNRDD-KKLVNTDKEK 346 (770)
T ss_dssp TTTHHHHHHHHHHHHHHHHTCCCCCCCCHHHHHHHHHHHHHHTCCEEEEEEECSCCCSSSTTCCCCCCC-CCCSSCSCGG
T ss_pred HHHHHHHHHHHHhhHhhccCCCCCcchHHHHHHHHHHHhccCCCCcEEEEEecCCCCcCCCcccccccc-ccccCCcchh
Confidence 99999999999999999998888999999999999999985 79999999999888 89999999975 5678889999
Q ss_pred ccCCCCcHHHHHHHHHHhhcCeEEEEEEecCCccChhhhhhhccccccEEEEeCCCCcchhHHHHHHHHHhhcccccccc
Q 003269 590 SLRIPEDPFYKQMAADLTKFQIAVNVYAFSDKYTDIASLGTLAKYTGGQVYYYPSFQSTTHGERLRHELSRDLTRETAWE 669 (835)
Q Consensus 590 ~l~~pa~~FYk~La~~~~~~gIsVDlF~~s~~~vdiatL~~L~~~TGG~v~~y~~F~~~~d~~~L~~dL~r~l~r~~g~~ 669 (835)
++++++++|||+||++|+++||+||||+++.+|+||++|+.|+++|||++|+|++|+.++|.++|.+||+|.+++++||+
T Consensus 347 ~~~~~a~~fY~~lA~~~~~~~i~VDlF~~s~~~vdlatl~~l~~~TGG~v~~y~~F~~~~~~~~f~~dl~~~l~~~~gf~ 426 (770)
T 3efo_B 347 ILFQPQTNVYDSLAKDCVAHGCSVTLFLFPSQYVDVASLGLVPQLTGGTLYKYNNFQMHLDRQQFLNDLRNDIEKKIGFD 426 (770)
T ss_dssp GGGSCSSSHHHHHHHHHHHTTEEEEEEECCSSCCCHHHHTHHHHHTTCCEEECTTCCHHHHHHHHHHHHHHHHHSCEEEE
T ss_pred hhhcchHHHHHHHHHHHHHcCeEEEEEEecCCccChHHHHHHHhhcCceEEEecCCcchhHHHHHHHHHHHhhhhceeee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEEeCCCceEeeeecCcccCCCCceEeccCCCCCcEEEEEeeccccCCCceeEEEEEEEEEecCCcEEEEEEcCccc
Q 003269 670 AVMRIRCGKGVRFTNYHGNFMLRSTDLLALPAVDCDKAYAMQLSLEETLLTTQTVYFQVALLYTASCGERRIRVHTLAAP 749 (835)
Q Consensus 670 a~mrVR~S~Gl~V~~~~Gnf~~rs~~~~~l~~id~d~Sia~~f~~d~~l~~~~~~~IQ~AllYT~~~GeRRIRV~Tl~lp 749 (835)
|+||||||+||+|+++||||+++++++|+++++|+|++|+|+|+|++++.+...+|||+|++||+.+|||||||||++++
T Consensus 427 a~mrVR~S~gl~v~~~~G~~~~~~t~~~~l~~~~~d~s~~v~f~~~~~l~~~~~~~~Q~allYt~~~G~RRiRV~T~~l~ 506 (770)
T 3efo_B 427 AIMRVRTSTGFRATDFFGGILMNNTTDVEMAAIDCDKAVTVEFKHDDKLSEDSGALIQCAVLYTTISGQRRLRIHNLGLN 506 (770)
T ss_dssp EEEEEEECTTEEEEEEESSCBCSSSSCEEEEEEESSCCEEEEEEESSCCBTTTBEEEEEEEEEECTTCCEEEEEEEEEEE
T ss_pred EEEEEEecCCeEEEEeECCeeCCCCCceEecccCcCceEEEEEEecCCCCCCCcEEEEEEEEEEcCCCCEEEEEEEechh
Confidence 99999999999999999999999999999999999999999999999998777899999999999999999999999999
Q ss_pred ccCCHHHHHHhcChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCceecCcccchhhHHHh
Q 003269 750 VVSNLSDMYQQADTGAIVSVFSRLAIEKTLSHKLEDARNAVQLRLVKALKEYRNLYAVQHRLGSRMIYPESLKFLPFRLH 829 (835)
Q Consensus 750 vts~l~~vf~s~D~eai~~llaK~a~~~~~~~~l~d~R~~l~~~lv~iL~~YRk~~~a~~~~~gqLiLPeslKlLPly~l 829 (835)
|++++.++|+++|+||++++|+|+|++++++++++++|+.|+++|+++|++||| +|++.++++||+|||+||+||+||+
T Consensus 507 vt~~~~~v~~~~Dqea~~~llar~av~~~~~~~l~~~r~~L~~~~~~~l~~Yrk-~~~~~~s~~ql~Lp~~lkllP~~~~ 585 (770)
T 3efo_B 507 CSSQLADLYKSCETDALINFFAKSAFKAVLHQPLKVIREILVNQTAHMLACYRK-NCASPSAASQLILPDSMKVLPVYMN 585 (770)
T ss_dssp EESCHHHHHHTBCHHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHHHH-HTSCCCCTTEEEECGGGTTHHHHHH
T ss_pred hcccHHHHHHhcCHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHH-hccCCCCccceecCHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999 9988888899999999999999987
Q ss_pred c
Q 003269 830 D 830 (835)
Q Consensus 830 ~ 830 (835)
+
T Consensus 586 ~ 586 (770)
T 3efo_B 586 C 586 (770)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >3eh2_A Protein transport protein SEC24C; copii-coat protein, vesicle transport, cytoplasm, endoplasmic reticulum, ER-golgi transport, golgi apparatus; 2.35A {Homo sapiens} | Back alignment and structure |
|---|
| >3eh1_A Protein transport protein SEC24B; copii coat protein, vesicle transport, transport signal sequence, cytoplasm, endoplasmic reticulum; 1.80A {Homo sapiens} PDB: 2nut_B 2nup_B 3egd_B 3egx_B | Back alignment and structure |
|---|
| >1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 | Back alignment and structure |
|---|
| >1pcx_A Protein transport protein SEC24; 2.50A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 PDB: 1pd0_A 1pd1_A | Back alignment and structure |
|---|
| >1m2o_A SEC23, protein transport protein SEC23, SEC23P; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 PDB: 1m2v_A 2qtv_A* | Back alignment and structure |
|---|
| >2nut_A Protein transport protein SEC23A; human copii SEC23/24 complexed with SEC22, protein transport; 2.30A {Homo sapiens} PDB: 2nup_A 3egd_A 3eg9_A 3egx_A 3efo_A | Back alignment and structure |
|---|
| >4fx5_A VON willebrand factor type A; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, blood clotting; HET: MSE; 1.73A {Catenulispora acidiphila} | Back alignment and structure |
|---|
| >2yrc_A Protein transport protein SEC23A; zinc binding, copii, coat protein complex-II, endoplasmic reticulum, golgi, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2yrd_A | Back alignment and structure |
|---|
| >3ibs_A Conserved hypothetical protein BATB; structural genomics, protein structure, midwest center for S genomics, MCSG, PSI-2; HET: MSE; 2.10A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
| >3n2n_F Anthrax toxin receptor 1; rossmann fold; 1.80A {Homo sapiens} SCOP: c.62.1.1 | Back alignment and structure |
|---|
| >1shu_X Anthrax toxin receptor 2; alpha/beta rossmann fold, membrane protein; 1.50A {Homo sapiens} SCOP: c.62.1.1 PDB: 1tzn_a 1sht_X 1t6b_Y* | Back alignment and structure |
|---|
| >1atz_A VON willebrand factor; collagen-binding, hemostasis, dinucleotide binding fold; 1.80A {Homo sapiens} SCOP: c.62.1.1 PDB: 4dmu_B 2adf_A 1fe8_A 1ao3_A | Back alignment and structure |
|---|
| >4hqf_A Thrombospondin-related anonymous protein, trap; malaria, parasite motility, I domain, TSR domain, receptor O sporozoite, vaccine target; 2.20A {Plasmodium falciparum} PDB: 4hqk_A 2bbx_A | Back alignment and structure |
|---|
| >1q0p_A Complement factor B; VON willebrand factor, MAC-1, I domain, A domain, hydrolase; 1.80A {Homo sapiens} SCOP: c.62.1.1 | Back alignment and structure |
|---|
| >1ijb_A VON willebrand factor; dinucleotide-binding fold, blood clotting; 1.80A {Homo sapiens} SCOP: c.62.1.1 PDB: 1ijk_A 1auq_A 1u0n_A 3hxo_A 1uex_C 3hxq_A 1sq0_A 1m10_A 1fns_A 1oak_A 1u0o_C | Back alignment and structure |
|---|
| >4b4t_W RPN10, 26S proteasome regulatory subunit RPN10; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >4hqo_A Sporozoite surface protein 2; malaria, gliding motility, VWA domain, TSR domain, extensibl ribbon, receptor on sporozoite, vaccine target; HET: FUC BGC; 2.19A {Plasmodium vivax} PDB: 4hql_A* 4hqn_A* | Back alignment and structure |
|---|
| >2b2x_A Integrin alpha-1; computational design, antibody-antigen complex, immune syste; 2.20A {Rattus norvegicus} SCOP: c.62.1.1 | Back alignment and structure |
|---|
| >2odp_A Complement C2; C3/C5 convertase, complement serin protease, human complement system, glycoprotein, SP, VWFA,; HET: NAG; 1.90A {Homo sapiens} PDB: 2odq_A* 2i6q_A* 2i6s_A* | Back alignment and structure |
|---|
| >1v7p_C Integrin alpha-2; snake venom, C-type lectin, antagonist, cell adhes glycoprotein, toxin-cell adhesion complex; HET: NAG; 1.90A {Homo sapiens} SCOP: c.62.1.1 PDB: 1aox_A 1dzi_A | Back alignment and structure |
|---|
| >1n3y_A Integrin alpha-X; alpha/beta rossmann fold, cell adhesion; 1.65A {Homo sapiens} SCOP: c.62.1.1 | Back alignment and structure |
|---|
| >1mf7_A Integrin alpha M; cell adhesion; 1.25A {Homo sapiens} SCOP: c.62.1.1 PDB: 1na5_A 1jlm_A 1ido_A 1m1u_A 3q3g_G 1n9z_A 1bhq_1 1bho_1 1idn_1 3qa3_G | Back alignment and structure |
|---|
| >2x31_A Magnesium-chelatase 60 kDa subunit; ligase, bacteriochlorophyll biosynthesis, photosynthesis; 7.50A {Rhodobacter capsulatus} | Back alignment and structure |
|---|
| >1rrk_A Complement factor B; BB, hydrolase; 2.00A {Homo sapiens} SCOP: b.47.1.2 c.62.1.1 PDB: 1rs0_A* 1rtk_A* 2win_I* 1dle_A | Back alignment and structure |
|---|
| >1pt6_A Integrin alpha-1; cell adhesion; 1.87A {Homo sapiens} SCOP: c.62.1.1 PDB: 4a0q_A 1qcy_A 1qc5_A 1qc5_B 1ck4_A 1mhp_A | Back alignment and structure |
|---|
| >2x5n_A SPRPN10, 26S proteasome regulatory subunit RPN10; nuclear protein, nucleus, ubiquitin; 1.30A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
| >1mjn_A Integrin alpha-L; rossmann fold, immune system; 1.30A {Homo sapiens} SCOP: c.62.1.1 PDB: 3hi6_A 1mq8_B* 3eoa_I 3eob_I 1rd4_A* 1lfa_A 1zon_A 1zoo_A 1zop_A 1dgq_A 1xdd_A* 1xdg_A* 1xuo_A* 3e2m_A* 3bqn_B* 1cqp_A* 3bqm_B* 2ica_A* 2o7n_A* 3m6f_A* ... | Back alignment and structure |
|---|
| >3hrz_D Complement factor B; serine protease, glycosilated, multi-domain, complement SYST convertase, complement alternate pathway; HET: NAG P6G; 2.20A {Homo sapiens} PDB: 2xwj_I* 3hs0_D* 2ok5_A* 2xwb_F* | Back alignment and structure |
|---|
| >1jey_B KU80; double-strand DNA break repair, non-homologous END-joining, protein/nucleic acid complex, alpha/beta domain, beta barrel; HET: DNA; 2.50A {Homo sapiens} SCOP: b.131.1.2 c.62.1.4 PDB: 1jeq_B* | Back alignment and structure |
|---|
| >3zqk_A VON willebrand factor; blood clotting, adamts-13, force sensor, VON willebrand DISE domain, haemostasis; HET: NAG; 1.70A {Homo sapiens} PDB: 3ppv_A 3ppx_A 3ppw_A 3ppy_A 3gxb_A* | Back alignment and structure |
|---|
| >2xgg_A Microneme protein 2; A/I domain, cell adhesion, hydrolase; 2.05A {Toxoplasma gondii} | Back alignment and structure |
|---|
| >3k6s_A Integrin alpha-X; cell receptor, adhesion molecule, cell adhesion, pyrrolidone carboxylic acid; HET: NAG MAN; 3.50A {Homo sapiens} PDB: 3k71_A* 3k72_A* | Back alignment and structure |
|---|
| >1jey_A KU70; double-strand DNA break repair, non-homologous END-joining, protein/nucleic acid complex, alpha/beta domain, beta barrel; HET: DNA; 2.50A {Homo sapiens} SCOP: b.131.1.1 c.62.1.3 PDB: 1jeq_A* 3rzx_B | Back alignment and structure |
|---|
| >2ww8_A RRGA, cell WALL surface anchor family protein; IGG, pilus, CNA_B, adhesin, integrin, cell adhesion; HET: EPE; 1.90A {Streptococcus pneumoniae} | Back alignment and structure |
|---|
| >3fcs_B Integrin beta-3; beta propeller, rossmann fold, EGF domain, cell adhesion, DI mutation, glycoprotein, HOST-virus interaction, M phosphoprotein; HET: NAG MAN; 2.55A {Homo sapiens} PDB: 4g1e_B* 3ije_B* 4g1m_B* 1jv2_B* 1l5g_B* 1m1x_B* 1u8c_B* | Back alignment and structure |
|---|
| >3t3p_B Integrin beta-3; integrin, cell adhesion, blood clotting, fibrinogen, platele; HET: NAG BMA MAN; 2.20A {Homo sapiens} PDB: 3t3m_B* 3nig_B* 3nif_B* 3nid_B* 2vdr_B* 2vc2_B* 2vdk_B* 2vdm_B* 2vdn_B* 2vdl_B* 2vdp_B* 2vdq_B* 2vdo_B* 3fcu_B* 1txv_B* 1ty3_B* 1ty5_B* 1ty6_B* 1ty7_B* 1tye_B* | Back alignment and structure |
|---|
| >3vi3_B Integrin beta-1; beta propeller fold, rossman fold, beta sandwich, fibronecti receptor, cell adhesion-immune system complex; HET: NAG BMA MAN; 2.90A {Homo sapiens} PDB: 3vi4_B* | Back alignment and structure |
|---|
| >3rag_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tructural genomics; 1.80A {Alicyclobacillus acidocaldarius subsp} | Back alignment and structure |
|---|
| >3k6s_B Integrin beta-2; cell receptor, adhesion molecule, cell adhesion, pyrrolidone carboxylic acid; HET: NAG MAN; 3.50A {Homo sapiens} PDB: 3k71_B* 3k72_B* | Back alignment and structure |
|---|
| >3v4v_B Integrin beta-7; cell adhesion, madcam-1, membrane; HET: NAG BMA MAN 0DU; 3.10A {Homo sapiens} PDB: 3v4p_B* | Back alignment and structure |
|---|
| >1yvr_A RO autoantigen, 60-kDa SS-A/RO ribonucleoprotein, 60 kDa; heat repeat, VON willebrand factor A, rossmann fold, midas motif', RNA binding protein; 1.95A {Xenopus laevis} SCOP: a.118.25.1 c.62.1.5 PDB: 1yvp_A 2i91_A | Back alignment and structure |
|---|
| >2iue_A Pactolus I-domain; membrane protein, CD, ITC, limbs, midas, admidas, membrane, integrin, titration, rossman fold, cell adhesion, transmembrane; NMR {Mus musculus} | Back alignment and structure |
|---|
| >2nvo_A RO sixty-related protein, RSR; alpha helical repeats, VON willebrand factor A domain, beta- RNA binding protein; 1.89A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 835 | ||||
| d1pd0a3 | 252 | c.62.1.2 (A:301-552) Sec24 {Baker's yeast (Sacchar | 1e-85 | |
| d2qtva3 | 271 | c.62.1.2 (A:120-390) Sec23 {Baker's yeast (Sacchar | 3e-61 | |
| d1pd0a2 | 177 | b.2.8.1 (A:133-215,A:553-646) Sec24 {Baker's yeast | 1e-35 | |
| d1pd0a2 | 177 | b.2.8.1 (A:133-215,A:553-646) Sec24 {Baker's yeast | 1e-11 | |
| d1pd0a5 | 85 | g.41.10.1 (A:216-300) Sec24 {Baker's yeast (Saccha | 6e-28 | |
| d2qtva5 | 75 | g.41.10.1 (A:45-119) Sec23 {Baker's yeast (Sacchar | 3e-18 | |
| d1pd0a1 | 107 | a.71.2.1 (A:647-753) Sec24 {Baker's yeast (Sacchar | 4e-13 |
| >d1pd0a3 c.62.1.2 (A:301-552) Sec24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 252 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: vWA-like superfamily: vWA-like family: Trunk domain of Sec23/24 domain: Sec24 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 271 bits (693), Expect = 1e-85
Identities = 86/251 (34%), Positives = 144/251 (57%), Gaps = 10/251 (3%)
Query: 425 PMPPLYFFLIDVSISAIRSGMLEVVAQTIKSCLDELPGF-PRTQIGFITFDSTIHFYNM- 482
P P Y FLIDVS S+I+SG+L T+ LD +P RT+I + D+ IH++ +
Sbjct: 1 PPPATYCFLIDVSQSSIKSGLLATTINTLLQNLDSIPNHDERTRISILCVDNAIHYFKIP 60
Query: 483 ------KSSLTQPQMMVISDLDDIFVPLPDDLLVNLSESRSVVDTLLDSLPSMFQDNMNV 536
+ S Q MM I+DL++ F+P P+ ++V+L R ++TLL +P +FQ N+
Sbjct: 61 LDSENNEESADQINMMDIADLEEPFLPRPNSMVVSLKACRQNIETLLTKIPQIFQSNLIT 120
Query: 537 ESAFGPALKAAFMVMSRLGGKLLIFQNSLPSLGVGCLKLRGDDLRVYGTDKEHSLRIPED 596
A GPALK+A+ ++ +GGK+++ +LP+LG+G L+ R + V + + L +D
Sbjct: 121 NFALGPALKSAYHLIGGVGGKIIVVSGTLPNLGIGKLQRRNESGVVNTSKETAQLLSCQD 180
Query: 597 PFYKQMAADLTKFQIAVNVYAFSDKYTDIASLGTLAKYTGGQVYYYPSFQSTTH--GERL 654
FYK D +K QI V+++ S+ Y D+ASL L+++T GQ ++YP F +
Sbjct: 181 SFYKNFTIDCSKVQITVDLFLASEDYMDVASLSNLSRFTAGQTHFYPGFSGKNPNDIVKF 240
Query: 655 RHELSRDLTRE 665
E ++ ++ +
Sbjct: 241 STEFAKHISMD 251
|
| >d2qtva3 c.62.1.2 (A:120-390) Sec23 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 271 | Back information, alignment and structure |
|---|
| >d1pd0a2 b.2.8.1 (A:133-215,A:553-646) Sec24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 177 | Back information, alignment and structure |
|---|
| >d1pd0a2 b.2.8.1 (A:133-215,A:553-646) Sec24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 177 | Back information, alignment and structure |
|---|
| >d1pd0a5 g.41.10.1 (A:216-300) Sec24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 85 | Back information, alignment and structure |
|---|
| >d2qtva5 g.41.10.1 (A:45-119) Sec23 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 75 | Back information, alignment and structure |
|---|
| >d1pd0a1 a.71.2.1 (A:647-753) Sec24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 107 | Back information, alignment and structure |
|---|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 835 | |||
| d1pd0a3 | 252 | Sec24 {Baker's yeast (Saccharomyces cerevisiae) [T | 100.0 | |
| d2qtva3 | 271 | Sec23 {Baker's yeast (Saccharomyces cerevisiae) [T | 100.0 | |
| d1pd0a2 | 177 | Sec24 {Baker's yeast (Saccharomyces cerevisiae) [T | 99.93 | |
| d1pd0a5 | 85 | Sec24 {Baker's yeast (Saccharomyces cerevisiae) [T | 99.82 | |
| d2qtva5 | 75 | Sec23 {Baker's yeast (Saccharomyces cerevisiae) [T | 99.67 | |
| d1pd0a1 | 107 | Sec24 {Baker's yeast (Saccharomyces cerevisiae) [T | 99.52 | |
| d2qtva2 | 176 | Sec23 {Baker's yeast (Saccharomyces cerevisiae) [T | 99.35 | |
| d1pd0a2 | 177 | Sec24 {Baker's yeast (Saccharomyces cerevisiae) [T | 98.8 | |
| d1shux_ | 181 | Capillary morphogenesis protein 2 domain {Human (H | 98.28 | |
| d2qtva1 | 103 | Sec23 {Baker's yeast (Saccharomyces cerevisiae) [T | 98.2 | |
| d1q0pa_ | 209 | Complement factor B domain {Human (Homo sapiens) [ | 98.19 | |
| d1atza_ | 184 | von Willebrand factor A3 domain, vWA3 {Human (Homo | 98.09 | |
| d1n3ya_ | 189 | Integrin alpha-x beta2 {Human (Homo sapiens) [TaxI | 98.05 | |
| d1ijba_ | 202 | von Willebrand factor A1 domain, vWA1 {Human (Homo | 97.97 | |
| d1jeya2 | 220 | Ku70 subunit N-terminal domain {Human (Homo sapien | 97.85 | |
| d1v7pc_ | 193 | Integrin alpha2-beta1 {Human (Homo sapiens) [TaxId | 97.77 | |
| d1jeyb2 | 236 | Ku80 subunit N-terminal domain {Human (Homo sapien | 97.76 | |
| d1mf7a_ | 194 | Integrin alpha M (CR3, CD11b/CD18, Mac-1 alpha sub | 97.71 | |
| d1pt6a_ | 192 | Integrin alpha1-beta1 {Human (Homo sapiens) [TaxId | 97.65 | |
| d1mjna_ | 179 | Integrin CD11a/CD18 (Leukocyte function associated | 97.57 | |
| d1tyeb2 | 248 | Integrin beta A domain {Human (Homo sapiens) [TaxI | 97.56 | |
| d2qtva2 | 176 | Sec23 {Baker's yeast (Saccharomyces cerevisiae) [T | 96.98 | |
| d1yvra2 | 174 | 60-kda SS-A/Ro ribonucleoprotein, RoRNP {African c | 94.91 |
| >d1pd0a3 c.62.1.2 (A:301-552) Sec24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: vWA-like superfamily: vWA-like family: Trunk domain of Sec23/24 domain: Sec24 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=1.8e-52 Score=440.20 Aligned_cols=242 Identities=35% Similarity=0.661 Sum_probs=205.6
Q ss_pred CCCCEEEEEEecchhHHhhchHHHHHHHHHHHHhcCCC-CCCceEEEEEEcCeEEEEecCCC-------CCCCceeeecc
Q 003269 425 PMPPLYFFLIDVSISAIRSGMLEVVAQTIKSCLDELPG-FPRTQIGFITFDSTIHFYNMKSS-------LTQPQMMVISD 496 (835)
Q Consensus 425 p~pp~yvFvIDvS~~av~sG~l~~~~~sI~~~L~~Lp~-~~rt~VGiITFds~V~fynl~~~-------~~~pqmlVvsD 496 (835)
|+||+||||||+|+.++++|++++++++|+++|+.|++ ++|++|||||||++||||+++.. .++++|++++|
T Consensus 1 P~Pp~~vFvID~s~~a~~~g~l~~~~~si~~~l~~l~~~~~~~~VgiItf~~~V~~y~l~~~~~~~~~~~~~~~~~~~~d 80 (252)
T d1pd0a3 1 PPPATYCFLIDVSQSSIKSGLLATTINTLLQNLDSIPNHDERTRISILCVDNAIHYFKIPLDSENNEESADQINMMDIAD 80 (252)
T ss_dssp CCCCBEEEEEECSHHHHHHTHHHHHHHHHHTTTTTSCCTTSCCEECEEEESSSEEEEECCCGGGC-------CEEECCCC
T ss_pred CCCCEEEEEEECCHHHhhhhHHHHHHHHHHHHHHhCcCCCCCcEEEEEEECCEEEEEEccCCccccccccccccccchhh
Confidence 68999999999999999999999999999999999986 47899999999999999999753 34578999999
Q ss_pred cccccCCCCCCcccchhhhHHHHHHHHhhCCccccCCCCcccchHHHHHHHHHHHHhcCCEEEEEecCCCCCCccccccc
Q 003269 497 LDDIFVPLPDDLLVNLSESRSVVDTLLDSLPSMFQDNMNVESAFGPALKAAFMVMSRLGGKLLIFQNSLPSLGVGCLKLR 576 (835)
Q Consensus 497 ldd~f~Pl~~~lLv~l~esr~~I~~lLd~L~~~~~~~~~~~~alG~AL~aA~~lL~~~GGkIivF~sg~Pt~GpG~L~~r 576 (835)
|+|.|+|.+++|++++.|+++.|+++|++|++++.+++..++|+|+||++|..+|+..||||++|++|+||+|+|+|+.|
T Consensus 81 l~~~~~p~~~~~lv~~~e~~~~i~~~L~~l~~~~~~~~~~~~~~G~Al~~a~~~l~~~gGkI~~f~sg~pt~GpG~l~~r 160 (252)
T d1pd0a3 81 LEEPFLPRPNSMVVSLKACRQNIETLLTKIPQIFQSNLITNFALGPALKSAYHLIGGVGGKIIVVSGTLPNLGIGKLQRR 160 (252)
T ss_dssp TTCC-----TTTSEETTTTHHHHHHHHHHHHHHTTTCCCCCCCHHHHHHHHHHHHTTTCEEEEEEESSCCCSSTTCCCC-
T ss_pred hhhccCCCCccceeeHHHHHHHHHHHHHhChhhcccCCCCcccHHHHHHHHHHHHhcCCCEEEEEecCCCCCCCcccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCcccccCCccccccCCCCcHHHHHHHHHHhhcCeEEEEEEecCCccChhhhhhhccccccEEEEeCCCCcc--hhHHHH
Q 003269 577 GDDLRVYGTDKEHSLRIPEDPFYKQMAADLTKFQIAVNVYAFSDKYTDIASLGTLAKYTGGQVYYYPSFQST--THGERL 654 (835)
Q Consensus 577 e~~~r~~gt~~e~~l~~pa~~FYk~La~~~~~~gIsVDlF~~s~~~vdiatL~~L~~~TGG~v~~y~~F~~~--~d~~~L 654 (835)
++......++++++++.++++||++||++|+++||+||+|+++.+++|+++|+.|+++|||++++|++|+.. +|..+|
T Consensus 161 ~~~~~~~~~~~~~~~~~~a~~fY~~la~~~~~~~isvdlF~~~~~~~dl~~l~~l~~~TGG~~~~y~~f~~~~~~d~~k~ 240 (252)
T d1pd0a3 161 NESGVVNTSKETAQLLSCQDSFYKNFTIDCSKVQITVDLFLASEDYMDVASLSNLSRFTAGQTHFYPGFSGKNPNDIVKF 240 (252)
T ss_dssp -------------------CCHHHHHHHHHTTTTEEEEEEEEESBCCCHHHHHHHHHTTTCCEEEEETCCTTSHHHHHHH
T ss_pred cccccccCcccchhcccchHHHHHHHHHHHHHCCEEEEEEeccccccCcHHHhhHhhcCCceEEEeCCCCcccHHHHHHH
Confidence 764434446778899999999999999999999999999999999999999999999999999999999987 578899
Q ss_pred HHHHHhhccccc
Q 003269 655 RHELSRDLTRET 666 (835)
Q Consensus 655 ~~dL~r~l~r~~ 666 (835)
.+||.|.|+|++
T Consensus 241 ~~dl~~~l~~~~ 252 (252)
T d1pd0a3 241 STEFAKHISMDF 252 (252)
T ss_dssp HHHHHHHHHCCC
T ss_pred HHHHHHhccCCC
Confidence 999999999874
|
| >d2qtva3 c.62.1.2 (A:120-390) Sec23 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
| >d1pd0a2 b.2.8.1 (A:133-215,A:553-646) Sec24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
| >d1pd0a5 g.41.10.1 (A:216-300) Sec24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
| >d2qtva5 g.41.10.1 (A:45-119) Sec23 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
| >d1pd0a1 a.71.2.1 (A:647-753) Sec24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
| >d2qtva2 b.2.8.1 (A:2-44,A:391-523) Sec23 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
| >d1pd0a2 b.2.8.1 (A:133-215,A:553-646) Sec24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
| >d1shux_ c.62.1.1 (X:) Capillary morphogenesis protein 2 domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d2qtva1 a.71.2.1 (A:524-626) Sec23 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
| >d1q0pa_ c.62.1.1 (A:) Complement factor B domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1atza_ c.62.1.1 (A:) von Willebrand factor A3 domain, vWA3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1n3ya_ c.62.1.1 (A:) Integrin alpha-x beta2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1ijba_ c.62.1.1 (A:) von Willebrand factor A1 domain, vWA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1jeya2 c.62.1.3 (A:34-253) Ku70 subunit N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1v7pc_ c.62.1.1 (C:) Integrin alpha2-beta1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1jeyb2 c.62.1.4 (B:6-241) Ku80 subunit N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1mf7a_ c.62.1.1 (A:) Integrin alpha M (CR3, CD11b/CD18, Mac-1 alpha subunit) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1pt6a_ c.62.1.1 (A:) Integrin alpha1-beta1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1mjna_ c.62.1.1 (A:) Integrin CD11a/CD18 (Leukocyte function associated antigen-1, LFA-1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1tyeb2 c.62.1.1 (B:107-354) Integrin beta A domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d2qtva2 b.2.8.1 (A:2-44,A:391-523) Sec23 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
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| >d1yvra2 c.62.1.5 (A:364-537) 60-kda SS-A/Ro ribonucleoprotein, RoRNP {African clawed frog (Xenopus laevis) [TaxId: 8355]} | Back information, alignment and structure |
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