Citrus Sinensis ID: 003276
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 834 | 2.2.26 [Sep-21-2011] | |||||||
| O52177 | 757 | GTP pyrophosphokinase OS= | yes | no | 0.569 | 0.627 | 0.408 | 1e-107 | |
| O54408 | 734 | GTP pyrophosphokinase OS= | yes | no | 0.559 | 0.636 | 0.398 | 1e-99 | |
| P0A0E9 | 736 | GTP pyrophosphokinase OS= | yes | no | 0.569 | 0.645 | 0.383 | 1e-94 | |
| P0A0F0 | 736 | GTP pyrophosphokinase OS= | yes | no | 0.569 | 0.645 | 0.383 | 1e-94 | |
| Q6G8T5 | 736 | GTP pyrophosphokinase OS= | yes | no | 0.569 | 0.645 | 0.383 | 1e-94 | |
| Q99TL8 | 736 | GTP pyrophosphokinase OS= | yes | no | 0.569 | 0.645 | 0.383 | 1e-94 | |
| Q6GG70 | 736 | GTP pyrophosphokinase OS= | yes | no | 0.569 | 0.645 | 0.383 | 1e-94 | |
| Q931Q4 | 736 | GTP pyrophosphokinase OS= | yes | no | 0.569 | 0.645 | 0.383 | 1e-94 | |
| Q54089 | 739 | Bifunctional (p)ppGpp syn | N/A | no | 0.558 | 0.630 | 0.369 | 7e-93 | |
| Q8CS97 | 729 | GTP pyrophosphokinase OS= | yes | no | 0.538 | 0.615 | 0.387 | 2e-91 |
| >sp|O52177|RELA_MYXXA GTP pyrophosphokinase OS=Myxococcus xanthus GN=relA PE=3 SV=1 | Back alignment and function desciption |
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Score = 389 bits (1000), Expect = e-107, Method: Compositional matrix adjust.
Identities = 221/541 (40%), Positives = 327/541 (60%), Gaps = 66/541 (12%)
Query: 124 EDSPERLWEDLRPTISYLSPN-ELELVRRALMLAFEAHDGQKRRSGEPFIIHPVEVARIL 182
+DSPER PT+S P+ +L+++++A + + + H GQ R+SGEP+++HP+EVA IL
Sbjct: 19 DDSPERH----PPTVSQYHPDPDLDIIKKAYVYSAKVHQGQLRKSGEPYLVHPLEVAGIL 74
Query: 183 GELELDWESIAAGLLHDTVEDTNVVTFERIEEEFGATVRRIVEGETKVSKLGKLKCKNEN 242
GEL+LD SI GLLHDT+EDT + T E + E FG+ V +V+G TK+SK + +
Sbjct: 75 GELKLDEASIVTGLLHDTIEDT-LATEEELTELFGSEVAHLVDGVTKLSKF----SASAS 129
Query: 243 HSVQDVKADDLRQMFLAMTEEVRVIIVKLADRLHNMRTLSHMPPHKQSSIATETLQVFAP 302
S ++ +A++ R+M +AM +++RVI+VKLADR HNMRTL HM KQ+ IA ETL ++AP
Sbjct: 130 LSQEEKQAENFRKMIIAMAQDIRVILVKLADRTHNMRTLDHMSEEKQARIAQETLDIYAP 189
Query: 303 LAKLLGMYQIKSELENLSFMYTNAEDYAKVKRRVADLYKEHEKELEEANKILMKKIEDDQ 362
LA LG+ IK+ELE+LSF Y +++ ++ ++ KE EK +E+ ++ K+ +
Sbjct: 190 LANRLGISWIKTELEDLSFRYVKPQEFFALQAKLNKRKKEREKYIEDTCDLIRSKLAE-- 247
Query: 363 FLDLMTVKTEIRSVCKEPYSIYKAVLKSRG-SINEVNQIAQLRIIIKPKPCSGVGPLCSP 421
+K E+ K YSIYK + KS+G ++++ I RII P
Sbjct: 248 ----RGLKGEVSGRFKHVYSIYKKI-KSQGIDFDQIHDIIAFRIIAPTAPS--------- 293
Query: 422 QQICYHVLGLVHGIWTPIPRAMKDYIATPKPNGYQSLHTTLIPFLYESMFRLEVQIRTEE 481
CY LGLVH +W P+P KD+IA PKPN YQSLHTT+I L E R+EVQIRT E
Sbjct: 294 ---CYEALGLVHEMWKPVPGRFKDFIAIPKPNMYQSLHTTIIGPLSE---RVEVQIRTSE 347
Query: 482 MDLIAERGIAAHYSGRVFVTGLVGHARPNGRSPRGKTVCLNNANIALRISWLNAIREWQE 541
M IAE GIAAH+ + GK V + + +WL + EWQ+
Sbjct: 348 MHKIAEEGIAAHW-----------------KYKEGKAVISKDDE---KFAWLRQLMEWQQ 387
Query: 542 EFVGNMTSREFVDTITRDLLGSRVFVFTPRGEIKNLPKGATVVDYAYMIHTEIGNKMVAA 601
+ +EF++T+ DL VFVFTP+G++++LP+GAT VD+AY IH+++GN+ V A
Sbjct: 388 DL---KDPKEFLETVKVDLFTDEVFVFTPKGDVRSLPRGATPVDFAYAIHSDVGNRCVGA 444
Query: 602 KVNGNLVSPTHVLANAEVVEIITYNALSSKSAFQRH--KQWLEHAKTRSARHKIMKFLRE 659
KVNG +V + + N + VE++T + Q+H K WL KT A+ +I F+++
Sbjct: 445 KVNGKIVPLRYKMKNGDTVEVLT--------SPQQHPSKDWLTFVKTSRAQQRIRGFIKQ 496
Query: 660 Q 660
Q
Sbjct: 497 Q 497
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In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance. This enzyme catalyzes the formation of pppGpp which is then hydrolyzed to form ppGpp. Myxococcus xanthus (taxid: 34) EC: 2EC: .EC: 7EC: .EC: 6EC: .EC: 5 |
| >sp|O54408|RELA_BACSU GTP pyrophosphokinase OS=Bacillus subtilis (strain 168) GN=relA PE=3 SV=3 | Back alignment and function description |
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| >sp|P0A0E9|RELA_STAAW GTP pyrophosphokinase OS=Staphylococcus aureus (strain MW2) GN=relA PE=3 SV=1 | Back alignment and function description |
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| >sp|P0A0F0|RELA_STAAU GTP pyrophosphokinase OS=Staphylococcus aureus GN=relA PE=3 SV=1 | Back alignment and function description |
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| >sp|Q6G8T5|RELA_STAAS GTP pyrophosphokinase OS=Staphylococcus aureus (strain MSSA476) GN=relA PE=3 SV=1 | Back alignment and function description |
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| >sp|Q99TL8|RELA_STAAN GTP pyrophosphokinase OS=Staphylococcus aureus (strain N315) GN=relA PE=1 SV=2 | Back alignment and function description |
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| >sp|Q6GG70|RELA_STAAR GTP pyrophosphokinase OS=Staphylococcus aureus (strain MRSA252) GN=relA PE=3 SV=1 | Back alignment and function description |
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| >sp|Q931Q4|RELA_STAAM GTP pyrophosphokinase OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) GN=relA PE=3 SV=2 | Back alignment and function description |
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| >sp|Q54089|RELA_STREQ Bifunctional (p)ppGpp synthase/hydrolase RelA OS=Streptococcus dysgalactiae subsp. equisimilis GN=relA PE=1 SV=1 | Back alignment and function description |
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| >sp|Q8CS97|RELA_STAES GTP pyrophosphokinase OS=Staphylococcus epidermidis (strain ATCC 12228) GN=relA PE=3 SV=1 | Back alignment and function description |
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Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 834 | ||||||
| 224131084 | 892 | predicted protein [Populus trichocarpa] | 0.985 | 0.921 | 0.813 | 0.0 | |
| 255564246 | 887 | guanosine-3',5'-bis(diphosphate) 3'-pyro | 0.972 | 0.914 | 0.804 | 0.0 | |
| 297743917 | 883 | unnamed protein product [Vitis vinifera] | 0.989 | 0.934 | 0.805 | 0.0 | |
| 225437434 | 887 | PREDICTED: GTP pyrophosphokinase-like [V | 0.989 | 0.930 | 0.801 | 0.0 | |
| 356503913 | 882 | PREDICTED: GTP pyrophosphokinase-like [G | 0.974 | 0.921 | 0.792 | 0.0 | |
| 356570978 | 882 | PREDICTED: GTP pyrophosphokinase-like [G | 0.974 | 0.921 | 0.788 | 0.0 | |
| 30268666 | 876 | RelA-SpoT like protein RSH1 [Nicotiana t | 0.985 | 0.938 | 0.773 | 0.0 | |
| 449469300 | 883 | PREDICTED: GTP pyrophosphokinase-like [C | 0.984 | 0.929 | 0.782 | 0.0 | |
| 449484441 | 883 | PREDICTED: LOW QUALITY PROTEIN: GTP pyro | 0.984 | 0.929 | 0.780 | 0.0 | |
| 307066606 | 885 | RSH1 [Ipomoea nil] | 0.990 | 0.933 | 0.754 | 0.0 |
| >gi|224131084|ref|XP_002320997.1| predicted protein [Populus trichocarpa] gi|222861770|gb|EEE99312.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
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Score = 1391 bits (3601), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 685/842 (81%), Positives = 741/842 (88%), Gaps = 20/842 (2%)
Query: 1 MASAASMSVSVECVNICKL-PKGDGSGRYYDCSVLSCAWKAPRALTGFLASTTHPA-HSS 58
MASA+S+SV VEC+NICKL KGDGSGRY +CSVLSCAWKAPR LTGFLAST HP+ S
Sbjct: 1 MASASSLSVPVECLNICKLLSKGDGSGRY-ECSVLSCAWKAPRVLTGFLASTAHPSPQCS 59
Query: 59 SLSLGPTGRRNRINSRCEAFDVGS-WCTEGSDLVLLGKLPRSSLLHVACKRWRLCLSPSV 117
S G GRR + SRC+AFD G + +E SD LLG+ +S L HVA K+W+L S S+
Sbjct: 60 SFLCGRNGRRKQFKSRCKAFDTGGCYSSEDSDFALLGRFFKSRLHHVAGKKWQLSSSSSI 119
Query: 118 SSDAFKEDSPERLWEDLRPTISYLSPNELELVRRALMLAFEAHDGQKRRSGEPFIIHPVE 177
S+D F E SPERLWEDL+PT+SYLSP ELELV +AL LAFEAHDGQKRRSGEPFIIHPVE
Sbjct: 120 SADTFNEVSPERLWEDLKPTVSYLSPKELELVHKALKLAFEAHDGQKRRSGEPFIIHPVE 179
Query: 178 VARILGELELDWESIAAGLLHDTVEDTNVVTFERIEEEFGATVRRIVEGETKVSKLGKLK 237
VARILGELELDWESIAAGLLHDTVEDTNVVTFERIEEEFG VR IVEGETKVSKLGKLK
Sbjct: 180 VARILGELELDWESIAAGLLHDTVEDTNVVTFERIEEEFGPIVRHIVEGETKVSKLGKLK 239
Query: 238 CKNENHSVQDVKADDLRQMFLAMTEEVRVIIVKLADRLHNMRTLSHMPPHKQSSIATETL 297
CKNEN SVQDVKADDLRQMFLAMTEEVRVIIVKLADRLHNMRTLSHMP HKQSSIA ETL
Sbjct: 240 CKNENESVQDVKADDLRQMFLAMTEEVRVIIVKLADRLHNMRTLSHMPLHKQSSIAMETL 299
Query: 298 QVFAPLAKLLGMYQIKSELENLSFMYTNAEDYAKVKRRVADLYKEHEKELEEANKILMKK 357
QVFAPLAKLLGMYQIKSELENLSFMYTNAEDYAKVKRRVADLYKEHEKELEEANKIL KK
Sbjct: 300 QVFAPLAKLLGMYQIKSELENLSFMYTNAEDYAKVKRRVADLYKEHEKELEEANKILKKK 359
Query: 358 IEDDQFLDLMTVKTEIRSVCKEPYSIYKAVLKSRGSINEVNQIAQLRIIIKPKPCSGVGP 417
IE+DQFLDL+TVKT++R+VCKEPYSIY+AVLKS+GSINEVNQIAQLRIII+PKPC G GP
Sbjct: 360 IEEDQFLDLLTVKTDVRAVCKEPYSIYRAVLKSKGSINEVNQIAQLRIIIQPKPCIGAGP 419
Query: 418 LCSPQQICYHVLGLVHGIWTPIPRAMKDYIATPKPNGYQSLHTTLIPFLYESMFRLEVQI 477
LCSPQQICYHVLGLVHGIWTPIPRAMKDYIATPKPNGYQSLHTT+IPFLYESMFRLEVQI
Sbjct: 420 LCSPQQICYHVLGLVHGIWTPIPRAMKDYIATPKPNGYQSLHTTVIPFLYESMFRLEVQI 479
Query: 478 RTEEMDLIAERGIAAHYSGRVFVTGLVGHARPNGRSPRGKTVCLNNANIALRISWLNAIR 537
RTEEMDLIAERGIAAHYSGRVFVTGLVGHA PNGRS RGK VCLNNANIALRI WLNAIR
Sbjct: 480 RTEEMDLIAERGIAAHYSGRVFVTGLVGHAMPNGRSTRGKAVCLNNANIALRIGWLNAIR 539
Query: 538 EWQEEFVGNMTSREFVDTITRDLLGSRVFVFTPRGE-----------IKNLPKGATVVDY 586
EWQEEFVGNM+SREFV+TITRDLLGS VFVFTPRGE IKNLPKGAT +DY
Sbjct: 540 EWQEEFVGNMSSREFVETITRDLLGSCVFVFTPRGEFWILIFDDMVQIKNLPKGATAIDY 599
Query: 587 AYMIHTEIGNKMVAAKVNGNLVSPTHVLANAEVVEIITYNALSSKSAFQRHKQWLEHAKT 646
AYMIHTEIGNKMVAAKVNGNLVSP HVLANAEVVEIITYNALSSKSAFQRHKQWL+HAKT
Sbjct: 600 AYMIHTEIGNKMVAAKVNGNLVSPMHVLANAEVVEIITYNALSSKSAFQRHKQWLQHAKT 659
Query: 647 RSARHKIMKFLREQAALSASEITADTVGDFVADSGEESEVEDLSDGSKQDKPLWEKILMN 706
RSARHKIMKFLREQAALSA+EITAD+V DF+ADS ESEVED+SD +K+ +PLWEKILMN
Sbjct: 660 RSARHKIMKFLREQAALSAAEITADSVNDFIADSEGESEVEDISDNNKRSRPLWEKILMN 719
Query: 707 VVQMSSPVRNSKAVCSDDNASLWAPKVNGKHNKRVHYVGSKAEGELSSQENSFAKMMHAN 766
VV+ SS + S + ++W PKVNGKHNK V + +G+L SQ N AKM+ A+
Sbjct: 720 VVEKSSQGKCSNDFLPVNYGTVWTPKVNGKHNKHV-----QTKGDLLSQGNGVAKMIQAS 774
Query: 767 VPMYKEVLPGLESWQASKIATWHNLEGHSIQWFSVVCIDRRGIMADVTTALATVGVTICS 826
+P YKEVLPGLESWQASK+A+WH+LEGHSIQWF VVCIDRRG+MA++ TALA V + ICS
Sbjct: 775 IPRYKEVLPGLESWQASKVASWHSLEGHSIQWFCVVCIDRRGMMAEIATALAAVDINICS 834
Query: 827 CV 828
CV
Sbjct: 835 CV 836
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Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255564246|ref|XP_002523120.1| guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase, putative [Ricinus communis] gi|223537682|gb|EEF39305.1| guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase, putative [Ricinus communis] | Back alignment and taxonomy information |
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| >gi|297743917|emb|CBI36887.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|225437434|ref|XP_002272154.1| PREDICTED: GTP pyrophosphokinase-like [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|356503913|ref|XP_003520744.1| PREDICTED: GTP pyrophosphokinase-like [Glycine max] | Back alignment and taxonomy information |
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| >gi|356570978|ref|XP_003553659.1| PREDICTED: GTP pyrophosphokinase-like [Glycine max] | Back alignment and taxonomy information |
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| >gi|30268666|dbj|BAC76004.1| RelA-SpoT like protein RSH1 [Nicotiana tabacum] | Back alignment and taxonomy information |
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| >gi|449469300|ref|XP_004152359.1| PREDICTED: GTP pyrophosphokinase-like [Cucumis sativus] | Back alignment and taxonomy information |
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| >gi|449484441|ref|XP_004156884.1| PREDICTED: LOW QUALITY PROTEIN: GTP pyrophosphokinase-like [Cucumis sativus] | Back alignment and taxonomy information |
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| >gi|307066606|gb|ADN23834.1| RSH1 [Ipomoea nil] | Back alignment and taxonomy information |
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Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 834 | ||||||
| TAIR|locus:2137869 | 884 | RSH1 "RELA/SPOT homolog 1" [Ar | 0.973 | 0.918 | 0.727 | 8.69999998136e-317 | |
| TIGR_CMR|DET_0005 | 728 | DET_0005 "GTP pyrophosphokinas | 0.374 | 0.428 | 0.398 | 6.4e-87 | |
| TIGR_CMR|CBU_0303 | 707 | CBU_0303 "guanosine-3,5-bis(di | 0.320 | 0.377 | 0.392 | 7.8e-80 | |
| TIGR_CMR|CPS_4973 | 703 | CPS_4973 "guanosine-3,5-bis(di | 0.320 | 0.379 | 0.397 | 3.1e-77 | |
| TIGR_CMR|GSU_2236 | 716 | GSU_2236 "GTP pyrophosphokinas | 0.317 | 0.370 | 0.408 | 1.2e-76 | |
| UNIPROTKB|Q3A9Z8 | 716 | relA "GTP pyrophosphokinase" [ | 0.312 | 0.364 | 0.425 | 3.3e-75 | |
| TIGR_CMR|CHY_2223 | 716 | CHY_2223 "GTP pyrophosphokinas | 0.312 | 0.364 | 0.425 | 3.3e-75 | |
| TIGR_CMR|BA_4637 | 727 | BA_4637 "GTP pyrophosphokinase | 0.321 | 0.368 | 0.427 | 4.5e-75 | |
| UNIPROTKB|Q9KNM2 | 705 | spoT "Guanosine-3',5'-bis(diph | 0.311 | 0.368 | 0.392 | 4.7e-75 | |
| TIGR_CMR|VC_2710 | 705 | VC_2710 "guanosine-3',5'-bis(d | 0.311 | 0.368 | 0.392 | 4.7e-75 |
| TAIR|locus:2137869 RSH1 "RELA/SPOT homolog 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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Score = 3038 (1074.5 bits), Expect = 8.7e-317, P = 8.7e-317
Identities = 597/821 (72%), Positives = 677/821 (82%)
Query: 12 ECVNICKLPKGDGSGRYYDCSVLSCAWKAPRALTGFLASTTHPAHSSSLSLGPTGRRNRI 71
ECVNIC L KGDG+ R DCS LSCAWKAPRALTGFLAST HP S S G GR++R+
Sbjct: 12 ECVNICNLTKGDGNARS-DCSALSCAWKAPRALTGFLASTAHPPVCSVYSCGRNGRKSRM 70
Query: 72 NSRC--EAFDVGSWCTEGSDLVLLGKLPRSSLLHVACKRWRL-CLSPSVSSDAFKEDSPE 128
+ C + ++ +E V + + +S L KRW L C+S SS A + + E
Sbjct: 71 KA-CAWQRYEYEVGFSEAPYFVNVRNILKSRLSCGGHKRWELYCVSAESSSGASSDVTVE 129
Query: 129 RLWEDLRPTISYLSPNELELVRRALMLAFEAHDGQKRRSGEPFIIHPVEVARILGELELD 188
LWEDL P+ISYL ELE V++ L LAFEAH GQKRRSGEPFIIHPV VARILGELELD
Sbjct: 130 TLWEDLFPSISYLPRKELEFVQKGLKLAFEAHHGQKRRSGEPFIIHPVAVARILGELELD 189
Query: 189 WESIAAGLLHDTVEDTNVVTFERIEEEFGATVRRIVEGETKVSKLGKLKCKNENHSVQDV 248
WESI AGLLHDTVEDTN +TFE+IEEEFGATVR IVEGETKVSKLGKLKCK E+ ++QDV
Sbjct: 190 WESIVAGLLHDTVEDTNFITFEKIEEEFGATVRHIVEGETKVSKLGKLKCKTESETIQDV 249
Query: 249 KADDLRQMFLAMTEEVRVIIVKLADRLHNMRTLSHMPPHKQSSIATETLQVFAPLAKLLG 308
KADDLRQMFLAMT+EVRVIIVKLADRLHNMRTL HMPPHKQSSIA ETLQVFAPLAKLLG
Sbjct: 250 KADDLRQMFLAMTDEVRVIIVKLADRLHNMRTLCHMPPHKQSSIAGETLQVFAPLAKLLG 309
Query: 309 MYQIKSELENLSFMYTNAEDYAKVKRRVADLYKEHEKELEEANKILMKKIEDDQFLDLMT 368
MY IKSELENLSFMY +AEDY +V R+A+LYKEHEKEL EAN+IL+KKIEDDQFLDL+T
Sbjct: 310 MYSIKSELENLSFMYVSAEDYDRVTSRIANLYKEHEKELTEANRILVKKIEDDQFLDLVT 369
Query: 369 VKTEIRSVCKEPYSIYKAVLKSRGSINEVNQIAQ-LRIIIKPKPCSGVGPLCSPQQICYH 427
V T++RSVCKE YSIYKA LKS+GSIN+ NQIAQ LRI++KPKP GVGPLCSPQQICYH
Sbjct: 370 VNTDVRSVCKETYSIYKAALKSKGSINDYNQIAQQLRIVVKPKPSVGVGPLCSPQQICYH 429
Query: 428 VLGLVHGIWTPIPRAMKDYIATPKPNGYQSLHTTLIPFLYESMFRLEVQIRTEEMDLIAE 487
VLGLVH IW PIPR +KDYIATPKPNGYQSLHTT+IPFLYESMFRLEVQIRTEEMDLIAE
Sbjct: 430 VLGLVHEIWKPIPRTVKDYIATPKPNGYQSLHTTVIPFLYESMFRLEVQIRTEEMDLIAE 489
Query: 488 RGIAAHYSGRVFVTGLVGHARPNGRSPRGKTVCLNNANIALRISWLNAIREWQEEFVGNM 547
RGIA +Y+G+ TGLVG+A P GR+ RGKT CLNNA+ ALR+ WLNAIREWQEEFVGNM
Sbjct: 490 RGIAVYYNGKSLSTGLVGNAVPLGRNSRGKTGCLNNADFALRVGWLNAIREWQEEFVGNM 549
Query: 548 TSREFVDTITRDLLGSRVFVFTPRGEIKNLPKGATVVDYAYMIHTEIGNKMVAAKVNGNL 607
+SREFVDTITRDLLGSRVFVFTP+GEIKNLPKGATVVDYAY+IHTEIGNKMVAAKVNGNL
Sbjct: 550 SSREFVDTITRDLLGSRVFVFTPKGEIKNLPKGATVVDYAYLIHTEIGNKMVAAKVNGNL 609
Query: 608 VSPTHVLANAEVVEIITYNALSSKSAFQRHKQWLEHAKTRSARHKIMKFLREQAALSASE 667
VSPTHVL NAEVVEI+TYNALSSKSAFQRHKQWL+HAKTRSARHKIM+FLREQAA A+E
Sbjct: 610 VSPTHVLENAEVVEIVTYNALSSKSAFQRHKQWLQHAKTRSARHKIMRFLREQAAQCAAE 669
Query: 668 ITADTVGDFVADSGEESEVEDLSDGSKQDKPLWEKILMNVVQMSSPVRNSKAVCSDDNAS 727
IT D V DFVADS +S+VEDL++ S++ WEKIL+NV Q S ++ + N S
Sbjct: 670 ITQDQVNDFVADS--DSDVEDLTEDSRKSLQWWEKILVNVKQFQSQDKSRDTTPAPQNGS 727
Query: 728 LWAPKVNGKHNKRVHYVGSKAEGELSSQENSFAKMMHANVPMYKEVLPGLESWQASKIAT 787
+WAPKVNGKHNK + S E E + A+++ AN+P YKEVLPGL+SW+ SKIAT
Sbjct: 728 VWAPKVNGKHNKAIKN-SSSDEPEFLLPGDGIARILPANIPAYKEVLPGLDSWRDSKIAT 786
Query: 788 WHNLEGHSIQWFSVVCIDRRGIMADVTTALATVGVTICSCV 828
WH+LEG SI+W VV +DR+GI+A+VTT LA G+ +CSCV
Sbjct: 787 WHHLEGQSIEWLCVVSMDRKGIIAEVTTVLAAEGIALCSCV 827
|
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| TIGR_CMR|DET_0005 DET_0005 "GTP pyrophosphokinase" [Dehalococcoides ethenogenes 195 (taxid:243164)] | Back alignment and assigned GO terms |
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| TIGR_CMR|CBU_0303 CBU_0303 "guanosine-3,5-bis(diphosphate) 3-pyrophosphohydrolase" [Coxiella burnetii RSA 493 (taxid:227377)] | Back alignment and assigned GO terms |
|---|
| TIGR_CMR|CPS_4973 CPS_4973 "guanosine-3,5-bis(diphosphate) 3-pyrophosphohydrolase" [Colwellia psychrerythraea 34H (taxid:167879)] | Back alignment and assigned GO terms |
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| TIGR_CMR|GSU_2236 GSU_2236 "GTP pyrophosphokinase" [Geobacter sulfurreducens PCA (taxid:243231)] | Back alignment and assigned GO terms |
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| UNIPROTKB|Q3A9Z8 relA "GTP pyrophosphokinase" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)] | Back alignment and assigned GO terms |
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| TIGR_CMR|CHY_2223 CHY_2223 "GTP pyrophosphokinase" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)] | Back alignment and assigned GO terms |
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| TIGR_CMR|BA_4637 BA_4637 "GTP pyrophosphokinase" [Bacillus anthracis str. Ames (taxid:198094)] | Back alignment and assigned GO terms |
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| UNIPROTKB|Q9KNM2 spoT "Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)] | Back alignment and assigned GO terms |
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| TIGR_CMR|VC_2710 VC_2710 "guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase" [Vibrio cholerae O1 biovar El Tor (taxid:686)] | Back alignment and assigned GO terms |
|---|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 2.7.6 | LOW CONFIDENCE prediction! |
| 4th Layer | 2.7.6.5 | LOW CONFIDENCE prediction! |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
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 | eugene3.00140713 | hypothetical protein (892 aa) | |||||||||
(Populus trichocarpa) | |||||||||||
 | estExt_fgenesh4_pg.C_1870028 | • | • | 0.620 | |||||||
 | eugene3.80240001 | • | • | 0.444 |
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 834 | |||
| COG0317 | 701 | COG0317, SpoT, Guanosine polyphosphate pyrophospho | 1e-166 | |
| TIGR00691 | 683 | TIGR00691, spoT_relA, (p)ppGpp synthetase, RelA/Sp | 1e-144 | |
| PRK11092 | 702 | PRK11092, PRK11092, bifunctional (p)ppGpp syntheta | 1e-118 | |
| PRK10872 | 743 | PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophos | 2e-70 | |
| pfam13328 | 156 | pfam13328, HD_4, HD domain | 1e-51 | |
| smart00954 | 111 | smart00954, RelA_SpoT, Region found in RelA / SpoT | 4e-35 | |
| pfam04607 | 116 | pfam04607, RelA_SpoT, Region found in RelA / SpoT | 4e-34 | |
| cd01668 | 60 | cd01668, TGS_RelA_SpoT, TGS_RelA_SpoT: The RelA (S | 2e-30 | |
| cd05399 | 129 | cd05399, NT_Rel-Spo_like, Nucleotidyltransferase ( | 1e-29 | |
| pfam02824 | 60 | pfam02824, TGS, TGS domain | 9e-22 | |
| cd01616 | 60 | cd01616, TGS, The TGS domain, named after the ThrR | 4e-10 | |
| pfam01966 | 111 | pfam01966, HD, HD domain | 7e-08 | |
| cd00077 | 145 | cd00077, HDc, Metal dependent phosphohydrolases wi | 7e-07 | |
| smart00471 | 124 | smart00471, HDc, Metal dependent phosphohydrolases | 1e-06 | |
| cd01669 | 76 | cd01669, TGS_Ygr210_C, TGS_Ygr210_C: The C-termina | 5e-06 | |
| COG2357 | 231 | COG2357, COG2357, PpGpp synthetase catalytic domai | 9e-06 | |
| PRK09602 | 396 | PRK09602, PRK09602, translation-associated GTPase; | 2e-05 | |
| PRK12444 | 639 | PRK12444, PRK12444, threonyl-tRNA synthetase; Revi | 5e-05 | |
| PRK00413 | 638 | PRK00413, thrS, threonyl-tRNA synthetase; Reviewed | 9e-05 | |
| cd01666 | 75 | cd01666, TGS_DRG_C, TGS_DRG_C: DRG (developmentall | 4e-04 | |
| pfam10957 | 60 | pfam10957, DUF2758, Protein of unknown function (D | 0.002 |
| >gnl|CDD|223394 COG0317, SpoT, Guanosine polyphosphate pyrophosphohydrolases/synthetases [Signal transduction mechanisms / Transcription] | Back alignment and domain information |
|---|
Score = 499 bits (1287), Expect = e-166
Identities = 215/531 (40%), Positives = 310/531 (58%), Gaps = 60/531 (11%)
Query: 130 LWEDLRPTISYLSPNELELVRRALMLAFEAHDGQKRRSGEPFIIHPVEVARILGELELDW 189
E+L +++ P +++A A +AH GQ R+SGEP+I HP+EVA IL EL +D
Sbjct: 8 ELEELLDSLATYLPPVDIELKKAWYYARQAHGGQTRKSGEPYISHPLEVAEILAELHMDM 67
Query: 190 ESIAAGLLHDTVEDTNVVTFERIEEEFGATVRRIVEGETKVSKLGKLKCKNENHSVQDVK 249
E++AA LLHDT+EDT V T E IEE FG V ++VEG TK+ K+G+L + E +
Sbjct: 68 ETLAAALLHDTIEDTPV-TEELIEEIFGKEVAKLVEGVTKLKKIGQLSSEEEL------Q 120
Query: 250 ADDLRQMFLAMTEEVRVIIVKLADRLHNMRTLSHMPPHKQSSIATETLQVFAPLAKLLGM 309
A++LR+M LAM +++RV+++KLADRLHN+RTL ++ K+ IA ETL ++APLA LG+
Sbjct: 121 AENLRKMLLAMVKDIRVVLIKLADRLHNLRTLKNLDEEKRRRIARETLDIYAPLAHRLGI 180
Query: 310 YQIKSELENLSFMYTNAEDYAKVKRRVADLYKEHEKELEEANKILMKKIEDDQFLDLMTV 369
QIK ELE+LSF Y + + Y ++ + + + E E+ +E L ++++ +
Sbjct: 181 GQIKWELEDLSFRYLHPDQYKRIAKLLDEKRLEREQYIENVVSELREELKAAG------I 234
Query: 370 KTEIRSVCKEPYSIYKAVLKSRGSINEVNQIAQLRIIIKPKPCSGVGPLCSPQQICYHVL 429
K E+ K YSIY+ + K + S +E+ + +RII+ CY L
Sbjct: 235 KAEVSGRPKHIYSIYRKMQKKKLSFDEIYDVRAVRIIVD------------TIPDCYTAL 282
Query: 430 GLVHGIWTPIPRAMKDYIATPKPNGYQSLHTTLIPFLYESMFRLEVQIRTEEMDLIAERG 489
G+VH +W PIP DYIA PKPNGYQSLHTT+I +EVQIRT+EM IAE G
Sbjct: 283 GIVHTLWKPIPGEFDDYIANPKPNGYQSLHTTVI---GPEGKPVEVQIRTKEMHEIAELG 339
Query: 490 IAAHYSGRVFVTGLVGHARPNGRSPRGKTVCLNNANIALRISWLNAIREWQEEFVGNMTS 549
+AAH+ R G + +I+WL + EWQEE + S
Sbjct: 340 VAAHW-----------------RYKEGGSAYEE------KIAWLRQLLEWQEE-SAD--S 373
Query: 550 REFVDTITRDLLGSRVFVFTPRGEIKNLPKGATVVDYAYMIHTEIGNKMVAAKVNGNLVS 609
EF++ + DL RV+VFTP+G++ +LPKGAT +D+AY +HT+IG++ + AKVNG +V
Sbjct: 374 GEFLEQLKSDLFPDRVYVFTPKGKVIDLPKGATPLDFAYAVHTDIGHRCIGAKVNGRIVP 433
Query: 610 PTHVLANAEVVEIITYNALSSKSAFQRHKQWLEHAKTRSARHKIMKFLREQ 660
T L + VEIIT SK A + WL T AR KI + ++Q
Sbjct: 434 LTTKLQTGDQVEIIT-----SKHAGPS-RDWLNFVVTSRARAKIRAWFKKQ 478
|
Length = 701 |
| >gnl|CDD|213552 TIGR00691, spoT_relA, (p)ppGpp synthetase, RelA/SpoT family | Back alignment and domain information |
|---|
| >gnl|CDD|236843 PRK11092, PRK11092, bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|182797 PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|222047 pfam13328, HD_4, HD domain | Back alignment and domain information |
|---|
| >gnl|CDD|214934 smart00954, RelA_SpoT, Region found in RelA / SpoT proteins | Back alignment and domain information |
|---|
| >gnl|CDD|218170 pfam04607, RelA_SpoT, Region found in RelA / SpoT proteins | Back alignment and domain information |
|---|
| >gnl|CDD|133438 cd01668, TGS_RelA_SpoT, TGS_RelA_SpoT: The RelA (SpoT) protein, also referred to as ppGpp hydrolase/synthetase, is a ribosome-associated protein that is activated during amino acid starvation and thought to mediate the stringent response | Back alignment and domain information |
|---|
| >gnl|CDD|143389 cd05399, NT_Rel-Spo_like, Nucleotidyltransferase (NT) domain of RelA- and SpoT-like ppGpp synthetases and hydrolases | Back alignment and domain information |
|---|
| >gnl|CDD|217243 pfam02824, TGS, TGS domain | Back alignment and domain information |
|---|
| >gnl|CDD|133435 cd01616, TGS, The TGS domain, named after the ThrRS, GTPase, and SpoT/RelA proteins where it occurs, is structurally similar to ubiquitin | Back alignment and domain information |
|---|
| >gnl|CDD|216815 pfam01966, HD, HD domain | Back alignment and domain information |
|---|
| >gnl|CDD|238032 cd00077, HDc, Metal dependent phosphohydrolases with conserved 'HD' motif | Back alignment and domain information |
|---|
| >gnl|CDD|214679 smart00471, HDc, Metal dependent phosphohydrolases with conserved 'HD' motif | Back alignment and domain information |
|---|
| >gnl|CDD|133439 cd01669, TGS_Ygr210_C, TGS_Ygr210_C: The C-terminal TGS domain of Ygr210 GTP-binding protein which is a member of Obg-like family of GTPases, and present in archaea | Back alignment and domain information |
|---|
| >gnl|CDD|225232 COG2357, COG2357, PpGpp synthetase catalytic domain [General function prediction only] | Back alignment and domain information |
|---|
| >gnl|CDD|236584 PRK09602, PRK09602, translation-associated GTPase; Reviewed | Back alignment and domain information |
|---|
| >gnl|CDD|183530 PRK12444, PRK12444, threonyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
| >gnl|CDD|234752 PRK00413, thrS, threonyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
| >gnl|CDD|133436 cd01666, TGS_DRG_C, TGS_DRG_C: DRG (developmentally regulated GTP-binding protein) represents a family of GTP-binding proteins that includes two members, DRG1 and DRG2 | Back alignment and domain information |
|---|
| >gnl|CDD|151404 pfam10957, DUF2758, Protein of unknown function (DUF2758) | Back alignment and domain information |
|---|
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 834 | |||
| COG0317 | 701 | SpoT Guanosine polyphosphate pyrophosphohydrolases | 100.0 | |
| PRK10872 | 743 | relA (p)ppGpp synthetase I/GTP pyrophosphokinase; | 100.0 | |
| PRK11092 | 702 | bifunctional (p)ppGpp synthetase II/ guanosine-3', | 100.0 | |
| TIGR00691 | 683 | spoT_relA (p)ppGpp synthetase, RelA/SpoT family. ( | 100.0 | |
| KOG1157 | 543 | consensus Predicted guanosine polyphosphate pyroph | 100.0 | |
| PF13328 | 153 | HD_4: HD domain; PDB: 3NR1_B. | 100.0 | |
| PF04607 | 115 | RelA_SpoT: Region found in RelA / SpoT proteins; I | 99.94 | |
| cd05399 | 129 | NT_Rel-Spo_like Nucleotidyltransferase (NT) domain | 99.93 | |
| COG2357 | 231 | PpGpp synthetase catalytic domain [General functio | 99.93 | |
| PF02824 | 60 | TGS: TGS domain; InterPro: IPR004095 The TGS domai | 99.69 | |
| cd01666 | 75 | TGS_DRG_C TGS_DRG_C: DRG (developmentally regulate | 99.21 | |
| cd01669 | 76 | TGS_Ygr210_C TGS_Ygr210_C: The C-terminal TGS doma | 99.14 | |
| cd01668 | 60 | TGS_RelA_SpoT TGS_RelA_SpoT: The RelA (SpoT) prote | 98.87 | |
| cd01616 | 60 | TGS The TGS domain, named after the ThrRS, GTPase, | 98.44 | |
| cd04938 | 76 | TGS_Obg-like TGS_Obg-like: The C-terminal TGS doma | 98.43 | |
| PRK09602 | 396 | translation-associated GTPase; Reviewed | 98.33 | |
| cd01667 | 61 | TGS_ThrRS_N TGS _ThrRS_N: ThrRS (threonyl-tRNA Syn | 98.26 | |
| TIGR03276 | 179 | Phn-HD phosphonate degradation operons associated | 98.02 | |
| PRK00413 | 638 | thrS threonyl-tRNA synthetase; Reviewed | 97.83 | |
| PF13291 | 80 | ACT_4: ACT domain; PDB: 2KO1_B 3IBW_A. | 97.68 | |
| COG1163 | 365 | DRG Predicted GTPase [General function prediction | 97.4 | |
| PTZ00258 | 390 | GTP-binding protein; Provisional | 97.25 | |
| PRK05659 | 66 | sulfur carrier protein ThiS; Validated | 97.17 | |
| PRK06437 | 67 | hypothetical protein; Provisional | 97.02 | |
| cd00565 | 65 | ThiS ThiaminS ubiquitin-like sulfur carrier protei | 96.96 | |
| cd04877 | 74 | ACT_TyrR N-terminal ACT domain of the TyrR protein | 96.94 | |
| PRK07440 | 70 | hypothetical protein; Provisional | 96.77 | |
| PRK06944 | 65 | sulfur carrier protein ThiS; Provisional | 96.72 | |
| PRK01777 | 95 | hypothetical protein; Validated | 96.66 | |
| PRK12444 | 639 | threonyl-tRNA synthetase; Reviewed | 96.66 | |
| PF01842 | 66 | ACT: ACT domain; InterPro: IPR002912 The ACT domai | 96.64 | |
| PRK07696 | 67 | sulfur carrier protein ThiS; Provisional | 96.58 | |
| TIGR01683 | 64 | thiS thiamine biosynthesis protein ThiS. This mode | 96.58 | |
| cd04887 | 74 | ACT_MalLac-Enz ACT_MalLac-Enz CD includes the N-te | 96.52 | |
| PRK08053 | 66 | sulfur carrier protein ThiS; Provisional | 96.43 | |
| PRK08364 | 70 | sulfur carrier protein ThiS; Provisional | 96.39 | |
| PLN02908 | 686 | threonyl-tRNA synthetase | 96.32 | |
| COG2104 | 68 | ThiS Sulfur transfer protein involved in thiamine | 96.31 | |
| cd04895 | 72 | ACT_ACR_1 ACT domain-containing protein which is c | 95.89 | |
| PRK06488 | 65 | sulfur carrier protein ThiS; Validated | 95.87 | |
| PRK09601 | 364 | GTP-binding protein YchF; Reviewed | 95.62 | |
| cd04869 | 81 | ACT_GcvR_2 ACT domains that comprise the Glycine C | 95.62 | |
| cd04896 | 75 | ACT_ACR-like_3 ACT domain-containing protein which | 95.5 | |
| cd04897 | 75 | ACT_ACR_3 ACT domain-containing protein which is c | 95.47 | |
| cd04899 | 70 | ACT_ACR-UUR-like_2 C-terminal ACT domains of the b | 95.45 | |
| cd04875 | 74 | ACT_F4HF-DF N-terminal ACT domain of formyltetrahy | 95.43 | |
| cd04900 | 73 | ACT_UUR-like_1 ACT domain family, ACT_UUR-like_1, | 95.43 | |
| PLN02799 | 82 | Molybdopterin synthase sulfur carrier subunit | 95.37 | |
| cd04926 | 72 | ACT_ACR_4 C-terminal ACT domain, of a novel type o | 95.35 | |
| cd04870 | 75 | ACT_PSP_1 CT domains found N-terminal of phosphose | 95.33 | |
| cd04888 | 76 | ACT_PheB-BS C-terminal ACT domain of a small (~147 | 95.33 | |
| cd04927 | 76 | ACT_ACR-like_2 Second ACT domain, of a novel type | 95.26 | |
| cd04886 | 73 | ACT_ThrD-II-like C-terminal ACT domain of biodegra | 95.24 | |
| cd04908 | 66 | ACT_Bt0572_1 N-terminal ACT domain of a novel prot | 95.02 | |
| cd04925 | 74 | ACT_ACR_2 ACT domain-containing protein which is c | 94.94 | |
| PRK06083 | 84 | sulfur carrier protein ThiS; Provisional | 94.92 | |
| cd04873 | 70 | ACT_UUR-ACR-like ACT domains of the bacterial sign | 94.91 | |
| PF03658 | 84 | Ub-RnfH: RnfH family Ubiquitin; InterPro: IPR00534 | 94.8 | |
| cd04879 | 71 | ACT_3PGDH-like ACT_3PGDH-like CD includes the C-te | 94.71 | |
| PRK00194 | 90 | hypothetical protein; Validated | 94.65 | |
| PRK05863 | 65 | sulfur carrier protein ThiS; Provisional | 94.64 | |
| cd04881 | 79 | ACT_HSDH-Hom ACT_HSDH_Hom CD includes the C-termin | 94.64 | |
| PRK07334 | 403 | threonine dehydratase; Provisional | 94.61 | |
| cd04893 | 77 | ACT_GcvR_1 ACT domains that comprise the Glycine C | 94.58 | |
| cd00754 | 80 | MoaD Ubiquitin domain of MoaD-like proteins. MoaD | 94.3 | |
| cd04889 | 56 | ACT_PDH-BS-like C-terminal ACT domain of the monof | 94.3 | |
| COG3830 | 90 | ACT domain-containing protein [Signal transduction | 94.27 | |
| PF13740 | 76 | ACT_6: ACT domain; PDB: 1ZPV_A 3P96_A 1U8S_A. | 94.23 | |
| cd04872 | 88 | ACT_1ZPV ACT domain proteins similar to the yet un | 94.2 | |
| cd04878 | 72 | ACT_AHAS N-terminal ACT domain of the Escherichia | 94.13 | |
| cd04884 | 72 | ACT_CBS C-terminal ACT domain of the cystathionine | 94.03 | |
| cd04901 | 69 | ACT_3PGDH C-terminal ACT (regulatory) domain of D- | 93.93 | |
| PF14451 | 81 | Ub-Mut7C: Mut7-C ubiquitin | 93.74 | |
| PRK08577 | 136 | hypothetical protein; Provisional | 93.62 | |
| cd04874 | 72 | ACT_Af1403 N-terminal ACT domain of the yet unchar | 93.57 | |
| cd04903 | 71 | ACT_LSD C-terminal ACT domain of the L-serine dehy | 93.49 | |
| PRK11840 | 326 | bifunctional sulfur carrier protein/thiazole synth | 93.36 | |
| cd04928 | 68 | ACT_TyrKc Uncharacterized, N-terminal ACT domain o | 93.13 | |
| cd04882 | 65 | ACT_Bt0572_2 C-terminal ACT domain of a novel prot | 93.03 | |
| PRK11589 | 190 | gcvR glycine cleavage system transcriptional repre | 93.01 | |
| PF02597 | 77 | ThiS: ThiS family; InterPro: IPR003749 ThiS (thiam | 93.0 | |
| PRK04435 | 147 | hypothetical protein; Provisional | 92.88 | |
| PF06071 | 84 | YchF-GTPase_C: Protein of unknown function (DUF933 | 92.76 | |
| cd04909 | 69 | ACT_PDH-BS C-terminal ACT domain of the monofuncti | 92.63 | |
| COG2716 | 176 | GcvR Glycine cleavage system regulatory protein [A | 92.58 | |
| PRK13562 | 84 | acetolactate synthase 1 regulatory subunit; Provis | 92.07 | |
| PRK05007 | 884 | PII uridylyl-transferase; Provisional | 91.52 | |
| PRK01759 | 854 | glnD PII uridylyl-transferase; Provisional | 91.47 | |
| PRK06737 | 76 | acetolactate synthase 1 regulatory subunit; Valida | 91.38 | |
| cd04905 | 80 | ACT_CM-PDT C-terminal ACT domain of the bifunction | 90.65 | |
| PRK14707 | 2710 | hypothetical protein; Provisional | 90.48 | |
| cd04867 | 83 | TGS_YchF_C TGS_YchF_C: This subfamily represents T | 90.21 | |
| TIGR01693 | 850 | UTase_glnD [Protein-PII] uridylyltransferase. This | 90.2 | |
| TIGR01682 | 80 | moaD molybdopterin converting factor, subunit 1, n | 90.14 | |
| PRK05092 | 931 | PII uridylyl-transferase; Provisional | 89.77 | |
| PRK03381 | 774 | PII uridylyl-transferase; Provisional | 89.08 | |
| cd04902 | 73 | ACT_3PGDH-xct C-terminal ACT (regulatory) domain o | 89.07 | |
| cd04883 | 72 | ACT_AcuB C-terminal ACT domain of the Bacillus sub | 89.01 | |
| PRK11152 | 76 | ilvM acetolactate synthase 2 regulatory subunit; P | 88.99 | |
| PRK08178 | 96 | acetolactate synthase 1 regulatory subunit; Review | 88.84 | |
| cd04876 | 71 | ACT_RelA-SpoT ACT domain found C-terminal of the R | 88.32 | |
| PRK04374 | 869 | PII uridylyl-transferase; Provisional | 88.31 | |
| COG2844 | 867 | GlnD UTP:GlnB (protein PII) uridylyltransferase [P | 87.94 | |
| cd02116 | 60 | ACT ACT domains are commonly involved in specifica | 87.86 | |
| PRK00275 | 895 | glnD PII uridylyl-transferase; Provisional | 87.19 | |
| cd04880 | 75 | ACT_AAAH-PDT-like ACT domain of the nonheme iron-d | 86.96 | |
| COG2914 | 99 | Uncharacterized protein conserved in bacteria [Fun | 86.83 | |
| PRK03059 | 856 | PII uridylyl-transferase; Provisional | 86.24 | |
| TIGR01687 | 88 | moaD_arch MoaD family protein, archaeal. Members o | 83.49 | |
| PRK12703 | 339 | tRNA 2'-O-methylase; Reviewed | 81.38 | |
| PRK03381 | 774 | PII uridylyl-transferase; Provisional | 80.21 |
| >COG0317 SpoT Guanosine polyphosphate pyrophosphohydrolases/synthetases [Signal transduction mechanisms / Transcription] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-172 Score=1481.46 Aligned_cols=635 Identities=37% Similarity=0.573 Sum_probs=576.6
Q ss_pred CCCChHHHHHhHhhhhcCCChhhHHHHHHHHHHHHHhhcCCcccCCCcccchHHHHHHHHHHcCCCHHHHHHHhhccccc
Q 003276 123 KEDSPERLWEDLRPTISYLSPNELELVRRALMLAFEAHDGQKRRSGEPFIIHPVEVARILGELELDWESIAAGLLHDTVE 202 (834)
Q Consensus 123 ~~~~~~~~~~~l~~~~~~~~~~~~~~i~~A~~~A~~aH~gQ~RksGePYi~Hpl~VA~ILa~l~~D~~tI~AaLLHDvvE 202 (834)
.+++.+++.+.+. .|.++.+.. +.+|+.||.++|.||+|+||+|||+||++||.||++++||.++++||||||++|
T Consensus 5 ~~~~~~~~~~~~~---~~~~~~~~~-l~kA~~~A~q~H~~q~r~SGePYi~Hpl~Va~iLael~~d~~tl~AaLLHD~vE 80 (701)
T COG0317 5 GCVELEELLDSLA---TYLPPVDIE-LKKAWYYARQAHGGQTRKSGEPYISHPLEVAEILAELHMDMETLAAALLHDTIE 80 (701)
T ss_pred ccccHHHHHHHHH---hcCChHHHH-HHHHHHHHHHHhHhhcCcCCCchhhCHHHHHHHHHHccCCHHHHHHHHccchHh
Confidence 5566777777665 566666666 999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCHHHHHhhhChHHHHHHhhhcccccccccccccCCcchhhhhHHHHHHHHHhccCCceEEeeeehhhhhcccccc
Q 003276 203 DTNVVTFERIEEEFGATVRRIVEGETKVSKLGKLKCKNENHSVQDVKADDLRQMFLAMTEEVRVIIVKLADRLHNMRTLS 282 (834)
Q Consensus 203 Dt~~~T~e~I~~~FG~~Va~LV~gvTkvs~l~k~~~~~~~~~~~~~qae~lRkmLLAm~~DiRViLIKLADRLhNmrtL~ 282 (834)
||+ +|.++|++.||++|+.||+||||++++++++. .+..|+||+||||+||++|+||++|||||||||||||.
T Consensus 81 Dt~-~t~e~i~~~FG~eVa~LV~GvTkl~~i~~~~~------~~~~qaen~rkmllAm~~DiRvilIKLADRLhNmrtl~ 153 (701)
T COG0317 81 DTP-VTEELIEEIFGKEVAKLVEGVTKLKKIGQLSS------EEELQAENLRKMLLAMVKDIRVVLIKLADRLHNLRTLK 153 (701)
T ss_pred cCC-CCHHHHHHHHCHHHHHHHhhHHHhhhhhccCc------cchhHHHHHHHHHHHhccCccEEEeehhhhhhhcccCc
Confidence 999 89999999999999999999999988754322 34558999999999999999999999999999999999
Q ss_pred cCCCCchhhHHHHHHHHHHHHHhhhcHHHHHHHHhcccccccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 003276 283 HMPPHKQSSIATETLQVFAPLAKLLGMYQIKSELENLSFMYTNAEDYAKVKRRVADLYKEHEKELEEANKILMKKIEDDQ 362 (834)
Q Consensus 283 ~~~~~kq~~iA~ETl~iyaPLA~rLGi~~ik~ELEDL~f~~l~P~~y~~i~~~l~~~r~~~e~~i~~~~~~L~~~L~~~~ 362 (834)
.++++||+++|+||++|||||||||||+++|||||||||+|++|++|+.|++.|.+.|.+|+++++++...|+..|.++|
T Consensus 154 ~~~~ek~~riakETl~IyAPLA~RLGi~~iK~ELEDlsFr~l~P~~Y~~I~~~l~e~r~~re~~i~~~~~~l~~~L~~~g 233 (701)
T COG0317 154 NLDEEKRRRIARETLDIYAPLAHRLGIGQIKWELEDLSFRYLHPDQYKRIAKLLDEKRLEREQYIENVVSELREELKAAG 233 (701)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhhhhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 98899999999999999999999999999999999999999999999999999999999999999999999999998874
Q ss_pred ccccccceeEEEeEecChHHHHHHHHhcCCCCCccceeEEEEEEEcCCCCCCCCCCCCcHHHHHHHHHHhhccccccccc
Q 003276 363 FLDLMTVKTEIRSVCKEPYSIYKAVLKSRGSINEVNQIAQLRIIIKPKPCSGVGPLCSPQQICYHVLGLVHGIWTPIPRA 442 (834)
Q Consensus 363 ~l~~~~i~~~V~~R~K~~ySI~~Km~rk~~~~~ei~Di~giRIIv~~~~c~~~~~~~~~~~dcY~vlg~ih~~~~p~p~r 442 (834)
+.++|.||+||+||||+||++|+..|++|+|++||||||++.+ |||++||+||.+|+|+|+|
T Consensus 234 ------i~a~v~gR~KhiYSIyrKM~~k~~~f~~I~Dl~avRiIv~~~~------------dCY~~LGiVH~~~kp~Pgr 295 (701)
T COG0317 234 ------IKAEVSGRPKHIYSIYRKMQKKKLSFDEIYDVRAVRIIVDTIP------------DCYTALGIVHTLWKPIPGE 295 (701)
T ss_pred ------CeEEEEcCCCcccHHHHHHHHcccChhhhhhheeEEEEECChH------------HHHHHHHHHHhcCcCCCCc
Confidence 8999999999999999999999999999999999999999875 9999999999999999999
Q ss_pred ccccccCCCCCCcceeEEEEeccCCCcceeEEEEEechhHHHHHHHHHHhhccCCccccccccCCCCCCCCCCCcccccc
Q 003276 443 MKDYIATPKPNGYQSLHTTLIPFLYESMFRLEVQIRTEEMDLIAERGIAAHYSGRVFVTGLVGHARPNGRSPRGKTVCLN 522 (834)
Q Consensus 443 ~kDYIa~PK~NGYqSLHt~V~~~~~~~~~~vEIQIRT~~Mh~~AE~G~aahw~yK~~~~~~~~~~~~~~~~~~~~~~~~~ 522 (834)
||||||+||+||||||||||+++. |.++||||||++||..||+|+||||+||+++
T Consensus 296 FKDYIA~PK~NgYQSlHTtv~gp~---g~~vEvQIRT~eMh~~AE~GvAAHW~YKe~~---------------------- 350 (701)
T COG0317 296 FDDYIANPKPNGYQSLHTTVIGPE---GKPVEVQIRTKEMHEIAELGVAAHWRYKEGG---------------------- 350 (701)
T ss_pred cccccccCCCCCCceeEEEEECCC---CceEEEEEecHHHHHHHhhhHHHHhHhhcCC----------------------
Confidence 999999999999999999999755 4799999999999999999999999999831
Q ss_pred hhhHHHHHHHHHHHHHHHHhhhcCCCchhhhhhhcccccCCceeeecCCCcEEeCCCCCcHhHHHhhcccccccceEEEE
Q 003276 523 NANIALRISWLNAIREWQEEFVGNMTSREFVDTITRDLLGSRVFVFTPRGEIKNLPKGATVVDYAYMIHTEIGNKMVAAK 602 (834)
Q Consensus 523 ~~~~~~~~~wl~~l~~~~~~~~~~~~~~ef~~~~k~dl~~~~V~VftP~G~i~~lp~gaT~lDfAy~ih~~~g~~~~~ak 602 (834)
......+.||++|++||++. + ++.||+|++|.|||+|+||||||+|++++||.||||+||||+|||++|++|+|||
T Consensus 351 -~~~~~~~~Wlr~lle~q~~~-~--d~~ef~e~~k~dlf~d~VyvfTPkG~vi~LP~GatplDFAY~vHt~iG~~c~gAk 426 (701)
T COG0317 351 -SAYEEKIAWLRQLLEWQEES-A--DSGEFLEQLKSDLFPDRVYVFTPKGKVIDLPKGATPLDFAYAVHTDIGHRCIGAK 426 (701)
T ss_pred -chhhHHHHHHHHHHHHHHhc-C--CcHHHHHHHhhcccCceEEEECCCCCEEeCCCCCcchhhhhhhhchhcceeeEEE
Confidence 11345789999999999996 2 4689999999999999999999999999999999999999999999999999999
Q ss_pred ECCEecCCCccCCCCCeEEEEecCCCCCCcccCCChhHHHhhcChHHHHHHHHHHHHHHHHHHHHhhHHHHhhhhhhcCC
Q 003276 603 VNGNLVSPTHVLANAEVVEIITYNALSSKSAFQRHKQWLEHAKTRSARHKIMKFLREQAALSASEITADTVGDFVADSGE 682 (834)
Q Consensus 603 vNg~~v~l~~~L~~gd~VeIit~~~~~~~~~~~p~~~WL~~v~T~~Ar~~Ir~~lr~~~~~~~~~~~~~~L~~~l~~~~~ 682 (834)
|||++|||+++|+|||+|||||+++. .|+++||+||+|++||+|||+|||++.+++.+..|+++|+++|.+++.
T Consensus 427 VnG~ivpl~~~Lk~Gd~VEIit~k~~------~Ps~~Wl~~v~t~kAR~kIr~~~k~~~re~~i~~G~~lLe~~l~~~g~ 500 (701)
T COG0317 427 VNGRIVPLTTKLQTGDQVEIITSKHA------GPSRDWLNFVVTSRARAKIRAWFKKQDRDENVEAGRELLEKELSRLGL 500 (701)
T ss_pred ECCEEeccceecCCCCEEEEEeCCCC------CCCHHHHHHHhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHcCC
Confidence 99999999999999999999999864 379999999999999999999999999999999999999999986544
Q ss_pred Cc------------ccccccccCCCChhHHHHHHHHHhhcCCCCcccccccccCC--cCCCCCcccCCCC------ccee
Q 003276 683 ES------------EVEDLSDGSKQDKPLWEKILMNVVQMSSPVRNSKAVCSDDN--ASLWAPKVNGKHN------KRVH 742 (834)
Q Consensus 683 ~~------------~~ddL~~~ig~g~~~~~~vl~~~~~~~~~~~~~~~~~~~~~--~~~~~v~V~G~~~------~cc~ 742 (834)
+. +.||||+++|.|+.+..++++.+. ...... ..+... .....+.|.|.+| +||+
T Consensus 501 ~~~~~~~l~~~~~~~~edl~a~ig~g~~~~~~v~~~l~-~~~~~~----~~~~~~~~~~~~~~~v~G~~~l~~~~a~CC~ 575 (701)
T COG0317 501 PKELEELLEKLNFKTVEDLYAAVGAGDIRLNHVVNALQ-KLNEPP----LEKLSRKSIGKGGVLVEGVGNLLTHLAKCCQ 575 (701)
T ss_pred ChHHHHHHHHhCCCCHHHHHHHhccCCCCHHHHHHHHH-hccccc----hhhhhccccCCCceEEeccCCceeEeecCCC
Confidence 21 459999999999999999998886 321111 111110 0135678899776 8999
Q ss_pred ecCCC-eeEEeecCCCceEEE--ecCCccchhhhCCCccccccccccccCCCC-CceeEEEEEEEeCcccHHHHHHHHHH
Q 003276 743 YVGSK-AEGELSSQENSFAKM--MHANVPMYKEVLPGLESWQASKIATWHNLE-GHSIQWFSVVCIDRRGIMADVTTALA 818 (834)
Q Consensus 743 PVPGD-IvG~its~GrGVtvh--dC~ni~~~~e~~~~~er~i~~~~v~W~~~~-~~~~~~I~V~~~DR~GlLadIt~vIa 818 (834)
|+||| |||||| +|+||+|| ||||+.++.. ..||||++ |+|+... +.|.++|.|++.||+|+|++|+++|+
T Consensus 576 PipGD~IvG~it-~g~Gi~iHr~dC~~~~~~~~--~~per~i~---v~W~~~~~~~f~~~i~v~~~~r~glL~~i~~~i~ 649 (701)
T COG0317 576 PVPGDPIVGYIT-KGRGISIHRQDCPNFLQLAG--HAPERVID---VSWGPEYGQVYPVDIEIRAYDRSGLLRDVSQVLA 649 (701)
T ss_pred CCCCCcEEEEEe-cCCcEEEehhcChhHHHhhh--cCcceEEE---EEecCCCCcceEEEEEEEEccccchHHHHHHHHH
Confidence 99999 999995 99999999 9999877643 57999999 9998774 56889999999999999999999999
Q ss_pred hCCCceeEEEEecC
Q 003276 819 TVGVTICSCVVSGQ 832 (834)
Q Consensus 819 ~~~iNI~sv~~~t~ 832 (834)
+.++||.++++.++
T Consensus 650 ~~~~ni~~v~~~~~ 663 (701)
T COG0317 650 NEKINVLGVNTRSD 663 (701)
T ss_pred hCCCceEEeecccc
Confidence 99999999999764
|
|
| >PRK10872 relA (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional | Back alignment and domain information |
|---|
| >PRK11092 bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase; Provisional | Back alignment and domain information |
|---|
| >TIGR00691 spoT_relA (p)ppGpp synthetase, RelA/SpoT family | Back alignment and domain information |
|---|
| >KOG1157 consensus Predicted guanosine polyphosphate pyrophosphohydrolase/synthase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >PF13328 HD_4: HD domain; PDB: 3NR1_B | Back alignment and domain information |
|---|
| >PF04607 RelA_SpoT: Region found in RelA / SpoT proteins; InterPro: IPR007685 The functions of Escherichia coli RelA and SpoT differ somewhat | Back alignment and domain information |
|---|
| >cd05399 NT_Rel-Spo_like Nucleotidyltransferase (NT) domain of RelA- and SpoT-like ppGpp synthetases and hydrolases | Back alignment and domain information |
|---|
| >COG2357 PpGpp synthetase catalytic domain [General function prediction only] | Back alignment and domain information |
|---|
| >PF02824 TGS: TGS domain; InterPro: IPR004095 The TGS domain is present in a number of enzymes, for example, in threonyl-tRNA synthetase (ThrRS), GTPase, and guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase (SpoT) [] | Back alignment and domain information |
|---|
| >cd01666 TGS_DRG_C TGS_DRG_C: DRG (developmentally regulated GTP-binding protein) represents a family of GTP-binding proteins that includes two members, DRG1 and DRG2 | Back alignment and domain information |
|---|
| >cd01669 TGS_Ygr210_C TGS_Ygr210_C: The C-terminal TGS domain of Ygr210 GTP-binding protein which is a member of Obg-like family of GTPases, and present in archaea | Back alignment and domain information |
|---|
| >cd01668 TGS_RelA_SpoT TGS_RelA_SpoT: The RelA (SpoT) protein, also referred to as ppGpp hydrolase/synthetase, is a ribosome-associated protein that is activated during amino acid starvation and thought to mediate the stringent response | Back alignment and domain information |
|---|
| >cd01616 TGS The TGS domain, named after the ThrRS, GTPase, and SpoT/RelA proteins where it occurs, is structurally similar to ubiquitin | Back alignment and domain information |
|---|
| >cd04938 TGS_Obg-like TGS_Obg-like: The C-terminal TGS domain of Obg-like GTPases such as those present in DRG (developmentally regulated GTP-binding protein), and GTP-binding proteins Ygr210 and YchF | Back alignment and domain information |
|---|
| >PRK09602 translation-associated GTPase; Reviewed | Back alignment and domain information |
|---|
| >cd01667 TGS_ThrRS_N TGS _ThrRS_N: ThrRS (threonyl-tRNA Synthetase) is a class II tRNA synthetase that couples threonine to its cognate tRNA | Back alignment and domain information |
|---|
| >TIGR03276 Phn-HD phosphonate degradation operons associated HDIG domain protein | Back alignment and domain information |
|---|
| >PRK00413 thrS threonyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
| >PF13291 ACT_4: ACT domain; PDB: 2KO1_B 3IBW_A | Back alignment and domain information |
|---|
| >COG1163 DRG Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
| >PTZ00258 GTP-binding protein; Provisional | Back alignment and domain information |
|---|
| >PRK05659 sulfur carrier protein ThiS; Validated | Back alignment and domain information |
|---|
| >PRK06437 hypothetical protein; Provisional | Back alignment and domain information |
|---|
| >cd00565 ThiS ThiaminS ubiquitin-like sulfur carrier protein | Back alignment and domain information |
|---|
| >cd04877 ACT_TyrR N-terminal ACT domain of the TyrR protein | Back alignment and domain information |
|---|
| >PRK07440 hypothetical protein; Provisional | Back alignment and domain information |
|---|
| >PRK06944 sulfur carrier protein ThiS; Provisional | Back alignment and domain information |
|---|
| >PRK01777 hypothetical protein; Validated | Back alignment and domain information |
|---|
| >PRK12444 threonyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
| >PF01842 ACT: ACT domain; InterPro: IPR002912 The ACT domain is found in a variety of contexts and is proposed to be a conserved regulatory binding fold | Back alignment and domain information |
|---|
| >PRK07696 sulfur carrier protein ThiS; Provisional | Back alignment and domain information |
|---|
| >TIGR01683 thiS thiamine biosynthesis protein ThiS | Back alignment and domain information |
|---|
| >cd04887 ACT_MalLac-Enz ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI and related domains | Back alignment and domain information |
|---|
| >PRK08053 sulfur carrier protein ThiS; Provisional | Back alignment and domain information |
|---|
| >PRK08364 sulfur carrier protein ThiS; Provisional | Back alignment and domain information |
|---|
| >PLN02908 threonyl-tRNA synthetase | Back alignment and domain information |
|---|
| >COG2104 ThiS Sulfur transfer protein involved in thiamine biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
| >cd04895 ACT_ACR_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein) | Back alignment and domain information |
|---|
| >PRK06488 sulfur carrier protein ThiS; Validated | Back alignment and domain information |
|---|
| >PRK09601 GTP-binding protein YchF; Reviewed | Back alignment and domain information |
|---|
| >cd04869 ACT_GcvR_2 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains | Back alignment and domain information |
|---|
| >cd04896 ACT_ACR-like_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein) | Back alignment and domain information |
|---|
| >cd04897 ACT_ACR_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein) | Back alignment and domain information |
|---|
| >cd04899 ACT_ACR-UUR-like_2 C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains | Back alignment and domain information |
|---|
| >cd04875 ACT_F4HF-DF N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase) | Back alignment and domain information |
|---|
| >cd04900 ACT_UUR-like_1 ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains | Back alignment and domain information |
|---|
| >PLN02799 Molybdopterin synthase sulfur carrier subunit | Back alignment and domain information |
|---|
| >cd04926 ACT_ACR_4 C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein) | Back alignment and domain information |
|---|
| >cd04870 ACT_PSP_1 CT domains found N-terminal of phosphoserine phosphatase (PSP, SerB) | Back alignment and domain information |
|---|
| >cd04888 ACT_PheB-BS C-terminal ACT domain of a small (~147 a | Back alignment and domain information |
|---|
| >cd04927 ACT_ACR-like_2 Second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein) | Back alignment and domain information |
|---|
| >cd04886 ACT_ThrD-II-like C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains | Back alignment and domain information |
|---|
| >cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains | Back alignment and domain information |
|---|
| >cd04925 ACT_ACR_2 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein) | Back alignment and domain information |
|---|
| >PRK06083 sulfur carrier protein ThiS; Provisional | Back alignment and domain information |
|---|
| >cd04873 ACT_UUR-ACR-like ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD | Back alignment and domain information |
|---|
| >PF03658 Ub-RnfH: RnfH family Ubiquitin; InterPro: IPR005346 This is a small family of proteins of unknown function | Back alignment and domain information |
|---|
| >cd04879 ACT_3PGDH-like ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH) | Back alignment and domain information |
|---|
| >PRK00194 hypothetical protein; Validated | Back alignment and domain information |
|---|
| >PRK05863 sulfur carrier protein ThiS; Provisional | Back alignment and domain information |
|---|
| >cd04881 ACT_HSDH-Hom ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) and related domains | Back alignment and domain information |
|---|
| >PRK07334 threonine dehydratase; Provisional | Back alignment and domain information |
|---|
| >cd04893 ACT_GcvR_1 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains | Back alignment and domain information |
|---|
| >cd00754 MoaD Ubiquitin domain of MoaD-like proteins | Back alignment and domain information |
|---|
| >cd04889 ACT_PDH-BS-like C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate | Back alignment and domain information |
|---|
| >COG3830 ACT domain-containing protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >PF13740 ACT_6: ACT domain; PDB: 1ZPV_A 3P96_A 1U8S_A | Back alignment and domain information |
|---|
| >cd04872 ACT_1ZPV ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein | Back alignment and domain information |
|---|
| >cd04878 ACT_AHAS N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS) | Back alignment and domain information |
|---|
| >cd04884 ACT_CBS C-terminal ACT domain of the cystathionine beta-synthase (CBS) domain protein found in Thermotoga maritima, Tm0935, and delta proteobacteria | Back alignment and domain information |
|---|
| >cd04901 ACT_3PGDH C-terminal ACT (regulatory) domain of D-3-Phosphoglycerate Dehydrogenase (3PGDH) found in fungi and bacteria | Back alignment and domain information |
|---|
| >PF14451 Ub-Mut7C: Mut7-C ubiquitin | Back alignment and domain information |
|---|
| >PRK08577 hypothetical protein; Provisional | Back alignment and domain information |
|---|
| >cd04874 ACT_Af1403 N-terminal ACT domain of the yet uncharacterized, small (~133 a | Back alignment and domain information |
|---|
| >cd04903 ACT_LSD C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit | Back alignment and domain information |
|---|
| >PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional | Back alignment and domain information |
|---|
| >cd04928 ACT_TyrKc Uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains | Back alignment and domain information |
|---|
| >cd04882 ACT_Bt0572_2 C-terminal ACT domain of a novel protein composed of just two ACT domains | Back alignment and domain information |
|---|
| >PRK11589 gcvR glycine cleavage system transcriptional repressor; Provisional | Back alignment and domain information |
|---|
| >PF02597 ThiS: ThiS family; InterPro: IPR003749 ThiS (thiaminS) is a 66 aa protein involved in sulphur transfer | Back alignment and domain information |
|---|
| >PRK04435 hypothetical protein; Provisional | Back alignment and domain information |
|---|
| >PF06071 YchF-GTPase_C: Protein of unknown function (DUF933); InterPro: IPR013029 This domain is found at the C terminus of family of conserved hypothetical proteins found in both prokaryotes and eukaryotes | Back alignment and domain information |
|---|
| >cd04909 ACT_PDH-BS C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) | Back alignment and domain information |
|---|
| >COG2716 GcvR Glycine cleavage system regulatory protein [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
| >PRK13562 acetolactate synthase 1 regulatory subunit; Provisional | Back alignment and domain information |
|---|
| >PRK05007 PII uridylyl-transferase; Provisional | Back alignment and domain information |
|---|
| >PRK01759 glnD PII uridylyl-transferase; Provisional | Back alignment and domain information |
|---|
| >PRK06737 acetolactate synthase 1 regulatory subunit; Validated | Back alignment and domain information |
|---|
| >cd04905 ACT_CM-PDT C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme | Back alignment and domain information |
|---|
| >PRK14707 hypothetical protein; Provisional | Back alignment and domain information |
|---|
| >cd04867 TGS_YchF_C TGS_YchF_C: This subfamily represents TGS domain-containing YchF GTP-binding protein, a universally conserved GTPase whose function is unknown | Back alignment and domain information |
|---|
| >TIGR01693 UTase_glnD [Protein-PII] uridylyltransferase | Back alignment and domain information |
|---|
| >TIGR01682 moaD molybdopterin converting factor, subunit 1, non-archaeal | Back alignment and domain information |
|---|
| >PRK05092 PII uridylyl-transferase; Provisional | Back alignment and domain information |
|---|
| >PRK03381 PII uridylyl-transferase; Provisional | Back alignment and domain information |
|---|
| >cd04902 ACT_3PGDH-xct C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH) | Back alignment and domain information |
|---|
| >cd04883 ACT_AcuB C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB | Back alignment and domain information |
|---|
| >PRK11152 ilvM acetolactate synthase 2 regulatory subunit; Provisional | Back alignment and domain information |
|---|
| >PRK08178 acetolactate synthase 1 regulatory subunit; Reviewed | Back alignment and domain information |
|---|
| >cd04876 ACT_RelA-SpoT ACT domain found C-terminal of the RelA/SpoT domains | Back alignment and domain information |
|---|
| >PRK04374 PII uridylyl-transferase; Provisional | Back alignment and domain information |
|---|
| >COG2844 GlnD UTP:GlnB (protein PII) uridylyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >cd02116 ACT ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme | Back alignment and domain information |
|---|
| >PRK00275 glnD PII uridylyl-transferase; Provisional | Back alignment and domain information |
|---|
| >cd04880 ACT_AAAH-PDT-like ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH) | Back alignment and domain information |
|---|
| >COG2914 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
| >PRK03059 PII uridylyl-transferase; Provisional | Back alignment and domain information |
|---|
| >TIGR01687 moaD_arch MoaD family protein, archaeal | Back alignment and domain information |
|---|
| >PRK12703 tRNA 2'-O-methylase; Reviewed | Back alignment and domain information |
|---|
| >PRK03381 PII uridylyl-transferase; Provisional | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 834 | ||||
| 1vj7_A | 393 | Crystal Structure Of The Bifunctional Catalytic Fra | 5e-68 | ||
| 3hvz_A | 78 | Crystal Structure Of The Tgs Domain Of The Clolep_0 | 9e-13 | ||
| 2kmm_A | 73 | Solution Nmr Structure Of The Tgs Domain Of Pg1808 | 4e-12 | ||
| 3nr1_A | 178 | A Metazoan Ortholog Of Spot Hydrolyzes Ppgpp And Pl | 2e-11 | ||
| 3nqw_A | 179 | A Metazoan Ortholog Of Spot Hydrolyzes Ppgpp And Pl | 5e-05 |
| >pdb|1VJ7|A Chain A, Crystal Structure Of The Bifunctional Catalytic Fragment Of Relseq, The RelaSPOT HOMOLOG FROM STREPTOCOCCUS EQUISIMILIS. Length = 393 | Back alignment and structure |
|
| >pdb|3HVZ|A Chain A, Crystal Structure Of The Tgs Domain Of The Clolep_03100 Protein From Clostridium Leptum, Northeast Structural Genomics Consortium Target Qlr13a Length = 78 | Back alignment and structure |
| >pdb|2KMM|A Chain A, Solution Nmr Structure Of The Tgs Domain Of Pg1808 From Porphyromonas Gingivalis. Northeast Structural Genomics Consortium Target Pgr122a (418-481) Length = 73 | Back alignment and structure |
| >pdb|3NR1|A Chain A, A Metazoan Ortholog Of Spot Hydrolyzes Ppgpp And Plays A Role In Starvation Responses Length = 178 | Back alignment and structure |
| >pdb|3NQW|A Chain A, A Metazoan Ortholog Of Spot Hydrolyzes Ppgpp And Plays A Role In Starvation Responses Length = 179 | Back alignment and structure |
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1vj7_A Bifunctional RELA/SPOT; HD domain, alpha beta 2-layer sandwich, helix bundle, mangan PPG2':3'P, (P)PPGPP, PPGPP; HET: GDP GPX; 2.10A {Streptococcus dysgalactiae subsp} SCOP: a.211.1.1 d.218.1.8 Length = 393 | Back alignment and structure |
|---|
Score = 455 bits (1172), Expect = e-154
Identities = 147/438 (33%), Positives = 242/438 (55%), Gaps = 56/438 (12%)
Query: 127 PERLWEDLRPTI-SYLSPNELELVRRALMLAFEAHDGQKRRSGEPFIIHPVEVARILGEL 185
E++ Y++ + V++AL A AH Q R+SGEP+I+HP++VA IL +L
Sbjct: 5 INLTGEEVVALAAKYMNETDAAFVKKALDYATAAHFYQVRKSGEPYIVHPIQVAGILADL 64
Query: 186 ELDWESIAAGLLHDTVEDTNVVTFERIEEEFGATVRRIVEGETKVSKLGKLKCKNENHSV 245
LD ++A G LHD VEDT++ T + IE +FG VR IV+G V+KLGK++ K S
Sbjct: 65 HLDAVTVACGFLHDVVEDTDI-TLDNIEFDFGKDVRDIVDG---VTKLGKVEYK----SH 116
Query: 246 QDVKADDLRQMFLAMTEEVRVIIVKLADRLHNMRTLSHMPPHKQSSIATETLQVFAPLAK 305
++ A++ R+M +AM++++RVI+VKLADRLHNMRTL H+ KQ I+ ET++++APLA
Sbjct: 117 EEQLAENHRKMLMAMSKDIRVILVKLADRLHNMRTLKHLRKDKQERISRETMEIYAPLAH 176
Query: 306 LLGMYQIKSELENLSFMYTNAEDYAKVKRRVADLYKEHEKELEEANKILMKKIEDDQFLD 365
LG+ +IK ELE+L+F Y N ++ K+ + + +E E +++ + +
Sbjct: 177 RLGISRIKWELEDLAFRYLNETEFYKISHMMNEKRREREALVDDIVTKIKSYTTEQG--- 233
Query: 366 LMTVKTEIRSVCKEPYSIYKAVLKSRGSINEVNQIAQLRIIIKPKPCSGVGPLCSPQQIC 425
+ ++ K YSIY+ + + +++ + +R +++ +
Sbjct: 234 ---LFGDVYGRPKHIYSIYRKMRDKKKRFDQIFDLIAIRCVMETQS------------DV 278
Query: 426 YHVLGLVHGIWTPIPRAMKDYIATPKPNGYQSLHTTLI-PFLYESMFRLEVQIRTEEMDL 484
Y ++G +H +W P+P KDYIA PK NGYQS+HTT+ P +E+QIRT+EM
Sbjct: 279 YAMVGYIHELWRPMPGRFKDYIAAPKANGYQSIHTTVYGPK-----GPIEIQIRTKEMHQ 333
Query: 485 IAERGIAAH--YSGRVFVTGLVGHARPNGRSPRGKTVCLNNANIALRISWLNAIREWQEE 542
+AE G+AAH Y +G +N A + ++W+ + E Q+
Sbjct: 334 VAEYGVAAHWAYK-------------------KGVRGKVNQAEQKVGMNWIKELVELQDA 374
Query: 543 FVGNMTSREFVDTITRDL 560
G+ + +FVD++
Sbjct: 375 SNGD--AVDFVDSLEHHH 390
|
| >3nr1_A HD domain-containing protein 3; stringent response, pyrophosphohydrolase, HD (histidine and acid) family, PPGPP hydrolase, hydrolase; 1.90A {Homo sapiens} Length = 178 | Back alignment and structure |
|---|
| >3nqw_A CG11900; stringent response, pyrophosphohydrolase, HD (histidine and acid) family ,PPGPP hydrolase, hydrolase; 2.90A {Drosophila melanogaster} Length = 179 | Back alignment and structure |
|---|
| >3l9d_A SMU.1046C, putative GTP pyrophosphokinase; transferase; 2.48A {Streptococcus mutans} Length = 255 | Back alignment and structure |
|---|
| >2be3_A GTP pyrophosphokinase; structural genomics, PSI, protein structure initiative, midwest center structural genomics, MCSG, transferase; HET: PG4; 2.40A {Streptococcus pneumoniae} SCOP: d.218.1.8 Length = 226 | Back alignment and structure |
|---|
| >3hvz_A Uncharacterized protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.20A {Clostridium leptum} Length = 78 | Back alignment and structure |
|---|
| >2kmm_A Guanosine-3',5'-BIS(diphosphate) 3'- pyrophosphohydrolase; methods development, TGS domain, predominantly beta-sheet structure; NMR {Porphyromonas gingivalis} Length = 73 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >2eki_A DRG 1, developmentally-regulated GTP-binding protein 1; protein NEDD3, neural precursor cell expressed developmentally DOWN-regulated protein 3; NMR {Homo sapiens} Length = 93 | Back alignment and structure |
|---|
| >1qf6_A THRRS, threonyl-tRNA synthetase; tRNA(Thr), AMP, mRNA, aminoacylati translational regulation, protein/RNA, ligase-RNA complex; HET: H2U AET G7M 5MU PSU AMP; 2.90A {Escherichia coli} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1 Length = 642 | Back alignment and structure |
|---|
| >1nyr_A Threonyl-tRNA synthetase 1; ATP, threonine, ligase; HET: ATP; 2.80A {Staphylococcus aureus} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1 PDB: 1nyq_A* Length = 645 | Back alignment and structure |
|---|
| >1tke_A Threonyl-tRNA synthetase; ligase; 1.46A {Escherichia coli} SCOP: d.15.10.1 d.67.1.1 PDB: 1tje_A 1tkg_A* 1tky_A* Length = 224 | Back alignment and structure |
|---|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 834 | |||
| 1vj7_A | 393 | Bifunctional RELA/SPOT; HD domain, alpha beta 2-la | 100.0 | |
| 3l9d_A | 255 | SMU.1046C, putative GTP pyrophosphokinase; transfe | 100.0 | |
| 2be3_A | 226 | GTP pyrophosphokinase; structural genomics, PSI, p | 100.0 | |
| 3nqw_A | 179 | CG11900; stringent response, pyrophosphohydrolase, | 100.0 | |
| 3nr1_A | 178 | HD domain-containing protein 3; stringent response | 99.97 | |
| 3hvz_A | 78 | Uncharacterized protein; alpha-beta protein, struc | 99.86 | |
| 2eki_A | 93 | DRG 1, developmentally-regulated GTP-binding prote | 99.41 | |
| 2kmm_A | 73 | Guanosine-3',5'-BIS(diphosphate) 3'- pyrophosphohy | 99.29 | |
| 1wwt_A | 88 | Threonyl-tRNA synthetase, cytoplasmic; TGS domain, | 99.16 | |
| 1tke_A | 224 | Threonyl-tRNA synthetase; ligase; 1.46A {Escherich | 98.93 | |
| 1wxq_A | 397 | GTP-binding protein; structural genomics, riken st | 98.9 | |
| 1qf6_A | 642 | THRRS, threonyl-tRNA synthetase; tRNA(Thr), AMP, m | 97.36 | |
| 1nyr_A | 645 | Threonyl-tRNA synthetase 1; ATP, threonine, ligase | 97.34 | |
| 2ko1_A | 88 | CTR148A, GTP pyrophosphokinase; homodimer, alpha+b | 96.88 | |
| 4a9a_A | 376 | Ribosome-interacting GTPase 1; DRG-DFRP complex, r | 96.86 | |
| 1tyg_B | 87 | YJBS; alpha beta barrel, protein-protein complex, | 96.73 | |
| 1f0z_A | 66 | THis protein; ubiquitin fold, transport protein; N | 96.72 | |
| 1zpv_A | 91 | ACT domain protein; structural genomics, PSI, prot | 96.67 | |
| 2l32_A | 74 | Small archaeal modifier protein 2; protein BIN; NM | 96.63 | |
| 1rws_A | 77 | Hypothetical protein PF1061; residual dipolar coup | 96.59 | |
| 1jal_A | 363 | YCHF protein; nucleotide-binding fold, structural | 96.55 | |
| 2dby_A | 368 | GTP-binding protein; GDP, structural genomics, NPP | 96.47 | |
| 2ohf_A | 396 | Protein OLA1, GTP-binding protein 9; ATPase, GTPas | 96.43 | |
| 2hj1_A | 97 | Hypothetical protein; structural genomics, PSI, pr | 96.37 | |
| 1ryj_A | 70 | Unknown; beta/alpha protein, structural genomics, | 96.31 | |
| 2cu3_A | 64 | Unknown function protein; thermus thermophilus HB8 | 96.26 | |
| 2k5p_A | 78 | THis protein, thiamine-biosynthesis protein; NESG, | 96.2 | |
| 2kl0_A | 73 | Putative thiamin biosynthesis THis; structural gen | 96.12 | |
| 2q5w_D | 77 | Molybdopterin converting factor, subunit 1; MOCO, | 95.41 | |
| 1ni3_A | 392 | YCHF GTPase, YCHF GTP-binding protein; structural | 95.22 | |
| 3po0_A | 89 | Small archaeal modifier protein 1; ubiquitin-like | 94.73 | |
| 1vjk_A | 98 | Molybdopterin converting factor, subunit 1; struct | 94.34 | |
| 2nyi_A | 195 | Unknown protein; protein structure initiative, PSI | 93.06 | |
| 1fm0_D | 81 | Molybdopterin convertin factor, subunit 1; molybde | 93.03 | |
| 1u8s_A | 192 | Glycine cleavage system transcriptional repressor, | 91.0 | |
| 2g1e_A | 90 | Hypothetical protein TA0895; MOAD, molybdopterin, | 90.4 | |
| 3o1l_A | 302 | Formyltetrahydrofolate deformylase; structural gen | 88.9 | |
| 2fgc_A | 193 | Acetolactate synthase, small subunit; regulatory s | 88.06 | |
| 2l52_A | 99 | Methanosarcina acetivorans SAMP1 homolog; beta-grA | 87.13 | |
| 3dwg_C | 93 | 9.5 kDa culture filtrate antigen CFP10A; sulfur ca | 87.1 | |
| 3rpf_C | 74 | Molybdopterin converting factor, subunit 1 (MOAD); | 85.95 | |
| 3dto_A | 223 | BH2835 protein; all alpha-helical protein, structu | 83.19 | |
| 1v8c_A | 168 | MOAD related protein; riken structural genomics/pr | 82.48 | |
| 2f06_A | 144 | Conserved hypothetical protein; structural genomic | 82.45 |
| >1vj7_A Bifunctional RELA/SPOT; HD domain, alpha beta 2-layer sandwich, helix bundle, mangan PPG2':3'P, (P)PPGPP, PPGPP; HET: GDP GPX; 2.10A {Streptococcus dysgalactiae subsp} SCOP: a.211.1.1 d.218.1.8 | Back alignment and structure |
|---|
Probab=100.00 E-value=4.3e-103 Score=870.76 Aligned_cols=377 Identities=38% Similarity=0.624 Sum_probs=311.5
Q ss_pred CCChHHHHHhHhhhhcCCChhhHHHHHHHHHHHHHhhcCCcccCCCcccchHHHHHHHHHHcCCCHHHHHHHhhcccccc
Q 003276 124 EDSPERLWEDLRPTISYLSPNELELVRRALMLAFEAHDGQKRRSGEPFIIHPVEVARILGELELDWESIAAGLLHDTVED 203 (834)
Q Consensus 124 ~~~~~~~~~~l~~~~~~~~~~~~~~i~~A~~~A~~aH~gQ~RksGePYi~Hpl~VA~ILa~l~~D~~tI~AaLLHDvvED 203 (834)
+++.+.+.+.+. .|+++.+.+++.+|+.||.++|.||+|++|+|||.||++||.||+++++|.++++||||||++||
T Consensus 6 ~~~~~~l~~~~~---~~~~~~~~~~l~~A~~~A~~aH~gQ~rksGePYi~Hpl~VA~iLa~l~~D~~~i~AALLHDvvED 82 (393)
T 1vj7_A 6 NLTGEEVVALAA---KYMNETDAAFVKKALDYATAAHFYQVRKSGEPYIVHPIQVAGILADLHLDAVTVACGFLHDVVED 82 (393)
T ss_dssp CCCHHHHHHHHH---HHSCHHHHHHHHHHHHHHHHHTTTCBCTTSCBTTHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHH
T ss_pred cCCHHHHHHHHH---HhCCHHHHHHHHHHHHHHHHHhccCcCCCCCcHHHHHHHHHHHHHHhcCCHHHHHHHHhhhHHhc
Confidence 466666766654 79999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHhhhChHHHHHHhhhcccccccccccccCCcchhhhhHHHHHHHHHhccCCceEEeeeehhhhhccccccc
Q 003276 204 TNVVTFERIEEEFGATVRRIVEGETKVSKLGKLKCKNENHSVQDVKADDLRQMFLAMTEEVRVIIVKLADRLHNMRTLSH 283 (834)
Q Consensus 204 t~~~T~e~I~~~FG~~Va~LV~gvTkvs~l~k~~~~~~~~~~~~~qae~lRkmLLAm~~DiRViLIKLADRLhNmrtL~~ 283 (834)
|+ +|.++|++.||++|+.||+||||++++. +. +....|+|++|||||||++|+||++|||||||||||++..
T Consensus 83 t~-~t~e~I~~~FG~~Va~lV~gvTk~~~~~---~~----~~~~~qae~~Rkmllam~~D~RvvlIKLADRlhNmRtl~~ 154 (393)
T 1vj7_A 83 TD-ITLDNIEFDFGKDVRDIVDGVTKLGKVE---YK----SHEEQLAENHRKMLMAMSKDIRVILVKLADRLHNMRTLKH 154 (393)
T ss_dssp SS-CCHHHHHHHHCHHHHHHHHHHHHHC---------------------CCSCTTTSCCCHHHHHHHHHHHHHHHHTCC-
T ss_pred CC-CCHHHHHHHhCHHHHHHHHHHHhcccCC---cc----cHHHHHHHHHHHHHHhhcCCcceeeeeHHHHHHccCchhh
Confidence 99 8999999999999999999999987653 21 1345789999999999999999999999999999999999
Q ss_pred CCCCchhhHHHHHHHHHHHHHhhhcHHHHHHHHhcccccccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 003276 284 MPPHKQSSIATETLQVFAPLAKLLGMYQIKSELENLSFMYTNAEDYAKVKRRVADLYKEHEKELEEANKILMKKIEDDQF 363 (834)
Q Consensus 284 ~~~~kq~~iA~ETl~iyaPLA~rLGi~~ik~ELEDL~f~~l~P~~y~~i~~~l~~~r~~~e~~i~~~~~~L~~~L~~~~~ 363 (834)
+|+++|+++|+||++|||||||||||++||||||||||+||+|++|..|.++|.+.+.+++.+++++...|++.|.+.
T Consensus 155 ~~~ek~~~iA~Etl~iyaPLA~rLGi~~ik~ELEdl~f~~l~p~~y~~i~~~l~~~r~~r~~~i~~i~~~l~~~L~~~-- 232 (393)
T 1vj7_A 155 LRKDKQERISRETMEIYAPLAHRLGISRIKWELEDLAFRYLNETEFYKISHMMNEKRREREALVDDIVTKIKSYTTEQ-- 232 (393)
T ss_dssp -----HHHHHHHHHHTHHHHHHHTTCHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHTT--
T ss_pred CChHHHHHHHHHHHHHHHHHHhhcChhHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999876
Q ss_pred cccccceeEEEeEecChHHHHHHHHhcCCCCCccceeEEEEEEEcCCCCCCCCCCCCcHHHHHHHHHHhhcccccccccc
Q 003276 364 LDLMTVKTEIRSVCKEPYSIYKAVLKSRGSINEVNQIAQLRIIIKPKPCSGVGPLCSPQQICYHVLGLVHGIWTPIPRAM 443 (834)
Q Consensus 364 l~~~~i~~~V~~R~K~~ySI~~Km~rk~~~~~ei~Di~giRIIv~~~~c~~~~~~~~~~~dcY~vlg~ih~~~~p~p~r~ 443 (834)
++.+.|+||+|++||||+||.||+.+|++|+|++||||||++ ..|||.++|+||+.|+|+|++|
T Consensus 233 ----gi~~~v~~R~K~~~Si~~Km~rk~~~~~~i~Di~giRIi~~~------------~~dcy~vl~~i~~~~~~~~~~~ 296 (393)
T 1vj7_A 233 ----GLFGDVYGRPKHIYSIYRKMRDKKKRFDQIFDLIAIRCVMET------------QSDVYAMVGYIHELWRPMPGRF 296 (393)
T ss_dssp ----TCCCEEEECCCCHHHHHHHHHHHGGGCCTTGGGCEEEEEESS------------HHHHHHHHHHHHHHSCBCTTCC
T ss_pred ----CCceEEEEEeCChHHHHHHHHHhCCChhhhcccceEEEEECC------------HHHHHHHHHHHHhcCCCCCCcc
Confidence 478999999999999999999999999999999999999765 4699999999999999999999
Q ss_pred cccccCCCCCCcceeEEEEeccCCCcceeEEEEEechhHHHHHHHHHHhhccCCccccccccCCCCCCCCCCCcccccch
Q 003276 444 KDYIATPKPNGYQSLHTTLIPFLYESMFRLEVQIRTEEMDLIAERGIAAHYSGRVFVTGLVGHARPNGRSPRGKTVCLNN 523 (834)
Q Consensus 444 kDYIa~PK~NGYqSLHt~V~~~~~~~~~~vEIQIRT~~Mh~~AE~G~aahw~yK~~~~~~~~~~~~~~~~~~~~~~~~~~ 523 (834)
||||++||+||||||||+|.++ .+ ++||||||..||.|||+||++||+||+.... .. ..
T Consensus 297 kDyIa~PK~nGYqSlH~~v~~p---~~-~vEIQIRT~~mh~~Ae~g~aah~~YK~~~~~--------------~~---~~ 355 (393)
T 1vj7_A 297 KDYIAAPKANGYQSIHTTVYGP---KG-PIEIQIRTKEMHQVAEYGVAAHWAYKKGVRG--------------KV---NQ 355 (393)
T ss_dssp EETTTSCCTTCCCCEEEEEECS---SS-EEEEEEEEHHHHHHHHHTTCC-------------------------------
T ss_pred cccccCCCcCCcceeEEEEEeC---Cc-eEEEEEecHHHHHHHHhhHHHHhccccCCCc--------------cc---ch
Confidence 9999999999999999999754 35 9999999999999999999999999973200 00 01
Q ss_pred hhHHHHHHHHHHHHHHHHhhhcCCCchhhh
Q 003276 524 ANIALRISWLNAIREWQEEFVGNMTSREFV 553 (834)
Q Consensus 524 ~~~~~~~~wl~~l~~~~~~~~~~~~~~ef~ 553 (834)
.....+++||++|++||++. .++.||+
T Consensus 356 ~~~~~~~~wl~~ll~~~~~~---~~~~ef~ 382 (393)
T 1vj7_A 356 AEQKVGMNWIKELVELQDAS---NGDAVDF 382 (393)
T ss_dssp -------CHHHHHHHC--------------
T ss_pred hhhHHHHHHHHHHHHHHhcC---CCcHHHH
Confidence 11234689999999999985 2467775
|
| >3l9d_A SMU.1046C, putative GTP pyrophosphokinase; transferase; 2.48A {Streptococcus mutans} | Back alignment and structure |
|---|
| >2be3_A GTP pyrophosphokinase; structural genomics, PSI, protein structure initiative, midwest center structural genomics, MCSG, transferase; HET: PG4; 2.40A {Streptococcus pneumoniae} SCOP: d.218.1.8 | Back alignment and structure |
|---|
| >3nqw_A CG11900; stringent response, pyrophosphohydrolase, HD (histidine and acid) family ,PPGPP hydrolase, hydrolase; 2.90A {Drosophila melanogaster} | Back alignment and structure |
|---|
| >3nr1_A HD domain-containing protein 3; stringent response, pyrophosphohydrolase, HD (histidine and acid) family, PPGPP hydrolase, hydrolase; 1.90A {Homo sapiens} | Back alignment and structure |
|---|
| >3hvz_A Uncharacterized protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.20A {Clostridium leptum} | Back alignment and structure |
|---|
| >2eki_A DRG 1, developmentally-regulated GTP-binding protein 1; protein NEDD3, neural precursor cell expressed developmentally DOWN-regulated protein 3; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >2kmm_A Guanosine-3',5'-BIS(diphosphate) 3'- pyrophosphohydrolase; methods development, TGS domain, predominantly beta-sheet structure; NMR {Porphyromonas gingivalis} | Back alignment and structure |
|---|
| >1wwt_A Threonyl-tRNA synthetase, cytoplasmic; TGS domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, ligase; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >1tke_A Threonyl-tRNA synthetase; ligase; 1.46A {Escherichia coli} SCOP: d.15.10.1 d.67.1.1 PDB: 1tje_A 1tkg_A* 1tky_A* | Back alignment and structure |
|---|
| >1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2 | Back alignment and structure |
|---|
| >1qf6_A THRRS, threonyl-tRNA synthetase; tRNA(Thr), AMP, mRNA, aminoacylati translational regulation, protein/RNA, ligase-RNA complex; HET: H2U AET G7M 5MU PSU AMP; 2.90A {Escherichia coli} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1 | Back alignment and structure |
|---|
| >1nyr_A Threonyl-tRNA synthetase 1; ATP, threonine, ligase; HET: ATP; 2.80A {Staphylococcus aureus} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1 PDB: 1nyq_A* | Back alignment and structure |
|---|
| >2ko1_A CTR148A, GTP pyrophosphokinase; homodimer, alpha+beta, transferase, structural genomics, PSI-2, protein structure initiative; NMR {Chlorobaculum tepidum} PDB: 3ibw_A | Back alignment and structure |
|---|
| >4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >1tyg_B YJBS; alpha beta barrel, protein-protein complex, THis, BIOS protein; 3.15A {Bacillus subtilis} SCOP: d.15.3.2 | Back alignment and structure |
|---|
| >1f0z_A THis protein; ubiquitin fold, transport protein; NMR {Escherichia coli} SCOP: d.15.3.2 PDB: 1zud_2 | Back alignment and structure |
|---|
| >1zpv_A ACT domain protein; structural genomics, PSI, protein structure INIT midwest center for structural genomics, MCSG, unknown funct; 1.90A {Streptococcus pneumoniae} SCOP: d.58.18.7 | Back alignment and structure |
|---|
| >2l32_A Small archaeal modifier protein 2; protein BIN; NMR {Haloferax volcanii} | Back alignment and structure |
|---|
| >1rws_A Hypothetical protein PF1061; residual dipolar couplings, structural genomics, unknown FUN; NMR {Pyrococcus furiosus} SCOP: d.15.3.2 PDB: 1sf0_A | Back alignment and structure |
|---|
| >1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2 | Back alignment and structure |
|---|
| >2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A | Back alignment and structure |
|---|
| >2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
| >2hj1_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; 2.10A {Haemophilus influenzae} SCOP: d.15.3.4 | Back alignment and structure |
|---|
| >1ryj_A Unknown; beta/alpha protein, structural genomics, protein structure initiative, OCSP, NESG, PSI; NMR {Methanothermococcusthermolithotrophicus} SCOP: d.15.3.2 | Back alignment and structure |
|---|
| >2cu3_A Unknown function protein; thermus thermophilus HB8, structural genomics, riken structu genomics/proteomics initiative, RSGI, NPPSFA; 1.70A {Thermus thermophilus} SCOP: d.15.3.2 PDB: 2htm_E | Back alignment and structure |
|---|
| >2k5p_A THis protein, thiamine-biosynthesis protein; NESG, GMR137, structural genomics, PSI-2, protein structure initiative; NMR {Geobacter metallireducens gs-15} PDB: 3cwi_A | Back alignment and structure |
|---|
| >2q5w_D Molybdopterin converting factor, subunit 1; MOCO, MPT synthase, MOAD, MOAE, transferase, molybdenum cofactor biosynthesis; 2.00A {Staphylococcus aureus} PDB: 2qie_B* | Back alignment and structure |
|---|
| >1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2 | Back alignment and structure |
|---|
| >3po0_A Small archaeal modifier protein 1; ubiquitin-like protein, protein binding; 1.55A {Haloferax volcanii} PDB: 2l83_A | Back alignment and structure |
|---|
| >1vjk_A Molybdopterin converting factor, subunit 1; structural genomics, PSI, protein structure INI southeast collaboratory for structural genomics; 1.51A {Pyrococcus furiosus} SCOP: d.15.3.1 | Back alignment and structure |
|---|
| >2nyi_A Unknown protein; protein structure initiative, PSI, center for eukaryotic structural genomics, CESG, structural genomics; 1.80A {Galdieria sulphuraria} | Back alignment and structure |
|---|
| >1fm0_D Molybdopterin convertin factor, subunit 1; molybdenum cofactor biosynthesis, transferase; 1.45A {Escherichia coli} SCOP: d.15.3.1 PDB: 1fma_D 1jw9_D 1jwa_D* 1jwb_D* 3bii_D 1nvi_D | Back alignment and structure |
|---|
| >1u8s_A Glycine cleavage system transcriptional repressor, putative; structural genomics, protein structure initiative (PSI), domain swapping; 2.45A {Vibrio cholerae} SCOP: d.58.18.5 d.58.18.5 | Back alignment and structure |
|---|
| >2g1e_A Hypothetical protein TA0895; MOAD, molybdopterin, transferase; NMR {Thermoplasma acidophilum} PDB: 2k22_A | Back alignment and structure |
|---|
| >3o1l_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 2.20A {Pseudomonas syringae PV} | Back alignment and structure |
|---|
| >2fgc_A Acetolactate synthase, small subunit; regulatory subunit, structural genomi protein structure initiative; 2.30A {Thermotoga maritima} SCOP: d.58.18.6 d.58.18.6 | Back alignment and structure |
|---|
| >2l52_A Methanosarcina acetivorans SAMP1 homolog; beta-grAsp fold, protein binding, E1-like, SAMP activator, ELSA, adenylation, ubiquitin; NMR {Methanosarcina acetivorans} | Back alignment and structure |
|---|
| >3dwg_C 9.5 kDa culture filtrate antigen CFP10A; sulfur carrier protein complex, beta-grAsp fold, amino-acid biosynthesis; HET: PLP; 1.53A {Mycobacterium tuberculosis} PDB: 3dwm_A | Back alignment and structure |
|---|
| >3rpf_C Molybdopterin converting factor, subunit 1 (MOAD); MCSG, PSI-biology, structural genomics, midwest center for S genomics, transferase; 1.90A {Helicobacter pylori} | Back alignment and structure |
|---|
| >3dto_A BH2835 protein; all alpha-helical protein, structural genomics, PSI-2, protein structure initiative; 3.30A {Bacillus halodurans} SCOP: a.211.1.1 | Back alignment and structure |
|---|
| >1v8c_A MOAD related protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, protein binding; 1.60A {Thermus thermophilus} SCOP: d.15.3.1 d.129.5.1 | Back alignment and structure |
|---|
| >2f06_A Conserved hypothetical protein; structural genomics hypothetical protein, PSI, protein struc initiative; HET: MSE HIS; 2.10A {Bacteroides thetaiotaomicron} SCOP: d.58.18.11 d.58.18.11 | Back alignment and structure |
|---|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 834 | ||||
| d1vj7a1 | 192 | a.211.1.1 (A:5-196) Stringent response-like protei | 2e-50 | |
| d1vj7a2 | 175 | d.218.1.8 (A:197-371) Stringent response-like prot | 3e-21 | |
| d1wxqa2 | 76 | d.15.10.2 (A:320-395) GTP-binding protein PH0525 { | 1e-17 | |
| d2be3a1 | 203 | d.218.1.8 (A:1-203) Putative GTP pyrophosphokinase | 2e-17 | |
| d1nyra2 | 59 | d.15.10.1 (A:4-62) Threonyl-tRNA synthetase (ThrRS | 1e-15 | |
| d1tkea1 | 62 | d.15.10.1 (A:1-62) Threonyl-tRNA synthetase (ThrRS | 2e-15 | |
| d1u8sa2 | 93 | d.58.18.5 (A:88-180) putative transcriptional repr | 0.001 |
| >d1vj7a1 a.211.1.1 (A:5-196) Stringent response-like protein RelA N-terminal domain {Streptococcus equisimilis [TaxId: 119602]} Length = 192 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: HD-domain/PDEase-like superfamily: HD-domain/PDEase-like family: HD domain domain: Stringent response-like protein RelA N-terminal domain species: Streptococcus equisimilis [TaxId: 119602]
Score = 173 bits (439), Expect = 2e-50
Identities = 90/194 (46%), Positives = 131/194 (67%), Gaps = 8/194 (4%)
Query: 132 EDLRPTISYLSPNELELVRRALMLAFEAHDGQKRRSGEPFIIHPVEVARILGELELDWES 191
E + Y++ + V++AL A AH Q R+SGEP+I+HP++VA IL +L LD +
Sbjct: 7 EVVALAAKYMNETDAAFVKKALDYATAAHFYQVRKSGEPYIVHPIQVAGILADLHLDAVT 66
Query: 192 IAAGLLHDTVEDTNVVTFERIEEEFGATVRRIVEGETKVSKLGKLKCKNENHSVQDVKAD 251
+A G LHD VEDT++ T + IE +FG VR IV+G TK+ K E S ++ A+
Sbjct: 67 VACGFLHDVVEDTDI-TLDNIEFDFGKDVRDIVDGVTKLGK-------VEYKSHEEQLAE 118
Query: 252 DLRQMFLAMTEEVRVIIVKLADRLHNMRTLSHMPPHKQSSIATETLQVFAPLAKLLGMYQ 311
+ R+M +AM++++RVI+VKLADRLHNMRTL H+ KQ I+ ET++++APLA LG+ +
Sbjct: 119 NHRKMLMAMSKDIRVILVKLADRLHNMRTLKHLRKDKQERISRETMEIYAPLAHRLGISR 178
Query: 312 IKSELENLSFMYTN 325
IK ELE+L+F Y N
Sbjct: 179 IKWELEDLAFRYLN 192
|
| >d1vj7a2 d.218.1.8 (A:197-371) Stringent response-like protein RelA domain 2 {Streptococcus equisimilis [TaxId: 119602]} Length = 175 | Back information, alignment and structure |
|---|
| >d1wxqa2 d.15.10.2 (A:320-395) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]} Length = 76 | Back information, alignment and structure |
|---|
| >d2be3a1 d.218.1.8 (A:1-203) Putative GTP pyrophosphokinase SP1097 {Streptococcus pneumoniae [TaxId: 1313]} Length = 203 | Back information, alignment and structure |
|---|
| >d1nyra2 d.15.10.1 (A:4-62) Threonyl-tRNA synthetase (ThrRS), N-terminal 'additional' domain {Staphylococcus aureus [TaxId: 1280]} Length = 59 | Back information, alignment and structure |
|---|
| >d1tkea1 d.15.10.1 (A:1-62) Threonyl-tRNA synthetase (ThrRS), N-terminal 'additional' domain {Escherichia coli [TaxId: 562]} Length = 62 | Back information, alignment and structure |
|---|
| >d1u8sa2 d.58.18.5 (A:88-180) putative transcriptional repressor VC2159 {Vibrio cholerae [TaxId: 666]} Length = 93 | Back information, alignment and structure |
|---|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 834 | |||
| d1vj7a1 | 192 | Stringent response-like protein RelA N-terminal do | 100.0 | |
| d1vj7a2 | 175 | Stringent response-like protein RelA domain 2 {Str | 100.0 | |
| d2be3a1 | 203 | Putative GTP pyrophosphokinase SP1097 {Streptococc | 99.97 | |
| d1wxqa2 | 76 | GTP-binding protein PH0525 {Pyrococcus horikoshii | 99.61 | |
| d1tkea1 | 62 | Threonyl-tRNA synthetase (ThrRS), N-terminal 'addi | 99.55 | |
| d1nyra2 | 59 | Threonyl-tRNA synthetase (ThrRS), N-terminal 'addi | 99.5 | |
| d1y7pa2 | 77 | Hypothetical protein AF1403, N-terminal domain {Ar | 97.31 | |
| d1u8sa2 | 93 | putative transcriptional repressor VC2159 {Vibrio | 96.91 | |
| d1zud21 | 65 | Thiamin biosynthesis sulfur carrier protein ThiS { | 96.53 | |
| d1zpva1 | 83 | UPF0237 protein SP0238 {Streptococcus pneumoniae [ | 96.31 | |
| d2f06a2 | 70 | Hypothetical protein BT0572 {Bacteroides thetaiota | 95.87 | |
| d1ygya3 | 78 | Phosphoglycerate dehydrogenase, regulatory (C-term | 95.35 | |
| d1sc6a3 | 84 | Phosphoglycerate dehydrogenase, regulatory (C-term | 95.33 | |
| d1u8sa1 | 86 | putative transcriptional repressor VC2159 {Vibrio | 95.25 | |
| d2hj1a1 | 77 | Hypothetical protein HI0395 {Haemophilus influenza | 95.09 | |
| d1tygb_ | 65 | Thiamin biosynthesis sulfur carrier protein ThiS { | 94.78 | |
| d2cu3a1 | 63 | Uncharacterised protein TTHA0675 {Thermus thermoph | 94.55 | |
| d1rwsa_ | 68 | Hypothetical protein PF1061 {Archaeon Pyrococcus f | 94.42 | |
| d2f06a1 | 71 | Hypothetical protein BT0572 {Bacteroides thetaiota | 93.86 | |
| d1vjka_ | 88 | Molybdopterin synthase subunit MoaD {Pyrococcus fu | 93.47 | |
| d2f1fa1 | 76 | Acetolactate synthase small subunit, IlvH {Escheri | 92.51 | |
| d2pc6a2 | 77 | Acetolactate synthase small subunit, IlvH {Nitroso | 92.45 | |
| d1jala2 | 85 | YchF GTP-binding protein, C-terminal domain {Haemo | 91.56 | |
| d2fgca2 | 78 | Acetolactate synthase small subunit, IlvH {Thermot | 91.42 | |
| d1ni3a2 | 82 | YchF GTP-binding protein, C-terminal domain {Fissi | 90.82 |
| >d1vj7a1 a.211.1.1 (A:5-196) Stringent response-like protein RelA N-terminal domain {Streptococcus equisimilis [TaxId: 119602]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: HD-domain/PDEase-like superfamily: HD-domain/PDEase-like family: HD domain domain: Stringent response-like protein RelA N-terminal domain species: Streptococcus equisimilis [TaxId: 119602]
Probab=100.00 E-value=6.4e-54 Score=433.90 Aligned_cols=191 Identities=47% Similarity=0.730 Sum_probs=165.4
Q ss_pred CCChHHHHHhHhhhhcCCChhhHHHHHHHHHHHHHhhcCCcccCCCcccchHHHHHHHHHHcCCCHHHHHHHhhcccccc
Q 003276 124 EDSPERLWEDLRPTISYLSPNELELVRRALMLAFEAHDGQKRRSGEPFIIHPVEVARILGELELDWESIAAGLLHDTVED 203 (834)
Q Consensus 124 ~~~~~~~~~~l~~~~~~~~~~~~~~i~~A~~~A~~aH~gQ~RksGePYi~Hpl~VA~ILa~l~~D~~tI~AaLLHDvvED 203 (834)
+++.|+++..+. .|+++.|.++|++|+.||.++|.||+|+||+|||+||++||.||+++++|.++++||||||++||
T Consensus 2 ~~~~e~~l~~~~---~yl~~~d~~~i~~A~~~A~~~H~gq~r~sG~py~~H~~~VA~iL~~~~~d~~~i~AalLhd~~ed 78 (192)
T d1vj7a1 2 NLTGEEVVALAA---KYMNETDAAFVKKALDYATAAHFYQVRKSGEPYIVHPIQVAGILADLHLDAVTVACGFLHDVVED 78 (192)
T ss_dssp CCCHHHHHHHHH---HHSCHHHHHHHHHHHHHHHHHTTTCBCTTSCBTTHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHH
T ss_pred CCCHHHHHHHHH---HhCCHHHHHHHHHHHHHHHHHHcCCcccChHHHHHHHHHHHHHHHHhcCChHHhhhhheechhhh
Confidence 567788877665 79999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHhhhChHHHHHHhhhcccccccccccccCCcchhhhhHHHHHHHHHhccCCceEEeeeehhhhhccccccc
Q 003276 204 TNVVTFERIEEEFGATVRRIVEGETKVSKLGKLKCKNENHSVQDVKADDLRQMFLAMTEEVRVIIVKLADRLHNMRTLSH 283 (834)
Q Consensus 204 t~~~T~e~I~~~FG~~Va~LV~gvTkvs~l~k~~~~~~~~~~~~~qae~lRkmLLAm~~DiRViLIKLADRLhNmrtL~~ 283 (834)
|+ +|.++|+++||++|+.+|++||+++.+... .....+++++|||+++|.+|+||++||||||||||||+..
T Consensus 79 t~-~t~e~I~~~FG~~Va~lV~~ltk~~~~~~~-------~~~~~~ae~~rkmlla~~~d~rvvlIKLADRLhnlrtl~~ 150 (192)
T d1vj7a1 79 TD-ITLDNIEFDFGKDVRDIVDGVTKLGKVEYK-------SHEEQLAENHRKMLMAMSKDIRVILVKLADRLHNMRTLKH 150 (192)
T ss_dssp SS-CCHHHHHHHHCHHHHHHHHHHHHHC---------------------CCSCTTTSCCCHHHHHHHHHHHHHHHHTCC-
T ss_pred ch-hHHHHHHHhcchhHHHHHHHHHhhcccccc-------ccchHHHHHHHHHHHhhccCceeehhHHHHHHhhcccccc
Confidence 99 899999999999999999999998775421 1345678999999999999999999999999999999999
Q ss_pred CCCCchhhHHHHHHHHHHHHHhhhcHHHHHHHHhcccccccC
Q 003276 284 MPPHKQSSIATETLQVFAPLAKLLGMYQIKSELENLSFMYTN 325 (834)
Q Consensus 284 ~~~~kq~~iA~ETl~iyaPLA~rLGi~~ik~ELEDL~f~~l~ 325 (834)
+|+++++++|+||+++|+|||+|||||+||||||||||+||+
T Consensus 151 ~~~~k~~~~a~Et~~iyaplA~rLG~~~ik~eLEdl~f~~L~ 192 (192)
T d1vj7a1 151 LRKDKQERISRETMEIYAPLAHRLGISRIKWELEDLAFRYLN 192 (192)
T ss_dssp -----HHHHHHHHHHTHHHHHHHTTCHHHHHHHHHHHHHHHC
T ss_pred CChHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999999999986
|
| >d1vj7a2 d.218.1.8 (A:197-371) Stringent response-like protein RelA domain 2 {Streptococcus equisimilis [TaxId: 119602]} | Back information, alignment and structure |
|---|
| >d2be3a1 d.218.1.8 (A:1-203) Putative GTP pyrophosphokinase SP1097 {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
| >d1wxqa2 d.15.10.2 (A:320-395) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
| >d1tkea1 d.15.10.1 (A:1-62) Threonyl-tRNA synthetase (ThrRS), N-terminal 'additional' domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d1nyra2 d.15.10.1 (A:4-62) Threonyl-tRNA synthetase (ThrRS), N-terminal 'additional' domain {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
| >d1y7pa2 d.58.18.12 (A:2-78) Hypothetical protein AF1403, N-terminal domain {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
| >d1u8sa2 d.58.18.5 (A:88-180) putative transcriptional repressor VC2159 {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
| >d1zud21 d.15.3.2 (2:2-66) Thiamin biosynthesis sulfur carrier protein ThiS {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d1zpva1 d.58.18.7 (A:1-83) UPF0237 protein SP0238 {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
| >d2f06a2 d.58.18.11 (A:1-70) Hypothetical protein BT0572 {Bacteroides thetaiotaomicron [TaxId: 818]} | Back information, alignment and structure |
|---|
| >d1ygya3 d.58.18.1 (A:452-529) Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
| >d1sc6a3 d.58.18.1 (A:327-410) Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d1u8sa1 d.58.18.5 (A:2-87) putative transcriptional repressor VC2159 {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
| >d2hj1a1 d.15.3.4 (A:11-87) Hypothetical protein HI0395 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
| >d1tygb_ d.15.3.2 (B:) Thiamin biosynthesis sulfur carrier protein ThiS {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
| >d2cu3a1 d.15.3.2 (A:1-63) Uncharacterised protein TTHA0675 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
| >d1rwsa_ d.15.3.2 (A:) Hypothetical protein PF1061 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
| >d2f06a1 d.58.18.11 (A:71-141) Hypothetical protein BT0572 {Bacteroides thetaiotaomicron [TaxId: 818]} | Back information, alignment and structure |
|---|
| >d1vjka_ d.15.3.1 (A:) Molybdopterin synthase subunit MoaD {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
| >d2f1fa1 d.58.18.6 (A:2-77) Acetolactate synthase small subunit, IlvH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d2pc6a2 d.58.18.6 (A:1-77) Acetolactate synthase small subunit, IlvH {Nitrosomonas europaea [TaxId: 915]} | Back information, alignment and structure |
|---|
| >d1jala2 d.15.10.2 (A:279-363) YchF GTP-binding protein, C-terminal domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
| >d2fgca2 d.58.18.6 (A:27-104) Acetolactate synthase small subunit, IlvH {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
| >d1ni3a2 d.15.10.2 (A:307-388) YchF GTP-binding protein, C-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|